BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780893|ref|YP_003065306.1| two component response
regulator [Candidatus Liberibacter asiaticus str. psy62]
         (236 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score =  481 bits (1239), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF
Sbjct: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR
Sbjct: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236


>gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 236

 Score =  420 bits (1079), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/236 (86%), Positives = 219/236 (92%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD ALA+SIELMLKSENFNVYVT+LGEDG++L K Y++D I+LDL L DI GF
Sbjct: 1   MRVLLIEDDSALANSIELMLKSENFNVYVTNLGEDGVDLGKIYDYDIILLDLNLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+ISTPVCILSGMSSIEDKVRGL  GADDYISKP NK+ELVARI AIVRRSR
Sbjct: 61  EVLRTLRMARISTPVCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSVIATGDLVVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           GRDEPEVKIIDVFICKLRKKLSNAA GKNYIETVWGRGYVLRE+ K+ TCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAADGKNYIETVWGRGYVLRESDKNATCEYLETA 236


>gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4]
          Length = 233

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 207/236 (87%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    ++ EY+ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDSAEYMETA 233


>gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 234

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   D   E+LETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGAAEFLETA 234


>gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
 gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
          Length = 234

 Score =  368 bits (944), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   D   E+LETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGATEFLETA 234


>gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation
           protein [Sinorhizobium meliloti 1021]
 gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti]
 gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response
           regulator [Sinorhizobium meliloti 1021]
 gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  366 bits (940), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    E  +YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PEGSDYLETA 233


>gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  366 bits (940), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 204/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    E   YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PEGSAYLETA 233


>gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score =  366 bits (939), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  EY ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGAEYAETA 233


>gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
 gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 894]
 gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
          Length = 233

 Score =  366 bits (939), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  EY ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGTEYAETA 233


>gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234]
 gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  365 bits (937), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  +YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE---PDGNDYLETA 233


>gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 233

 Score =  365 bits (937), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPSDDE 228


>gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
 gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
          Length = 233

 Score =  364 bits (935), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 174/231 (75%), Positives = 202/231 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   +E  E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPDNNELAE 231


>gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 233

 Score =  364 bits (935), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPTDDE 228


>gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 229

 Score =  363 bits (933), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 172/223 (77%), Positives = 198/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL++A  GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATAGKNYIETVWGRGYVLRE 223


>gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium
           extorquens DM4]
 gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens DM4]
          Length = 233

 Score =  363 bits (933), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 173/228 (75%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREPVEGE 228


>gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
 gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  363 bits (932), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 174/223 (78%), Positives = 197/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL++AA GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASAASGKNYIETVWGRGYVLRE 223


>gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score =  363 bits (931), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/223 (77%), Positives = 199/223 (89%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA GGKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANATGGKNYIETVWGRGYVLRE 223


>gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 233

 Score =  362 bits (929), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/228 (75%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 228


>gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
 gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  362 bits (929), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/231 (74%), Positives = 200/231 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV   R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL+ +AGGKNYIETVWGRGYVLRE  + E  E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATSAGGKNYIETVWGRGYVLREPDESEILE 231


>gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 233

 Score =  362 bits (928), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 172/226 (76%), Positives = 200/226 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPSE 226


>gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score =  361 bits (926), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 173/228 (75%), Positives = 198/228 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE    E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPMDGE 228


>gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 233

 Score =  360 bits (924), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 175/229 (76%), Positives = 200/229 (87%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE N  DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPNEADE 229


>gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
 gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
          Length = 243

 Score =  360 bits (924), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 173/223 (77%), Positives = 195/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 14  MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 74  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE
Sbjct: 194 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 236


>gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 231

 Score =  360 bits (923), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 197/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL  A+GG+NYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAASGGQNYIETVWGRGYVLRE 223


>gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 230

 Score =  360 bits (923), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/223 (77%), Positives = 195/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDNATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 223


>gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score =  360 bits (923), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 198/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD ++A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDVSVAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLRE 223


>gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
 gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
          Length = 234

 Score =  359 bits (922), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/231 (73%), Positives = 200/231 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 2   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+ELVARI+AIVRRS+
Sbjct: 62  EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 122 GHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL++A GG N+IETVWGRGYVLRE    E  E
Sbjct: 182 GMDEPELKIIDVFICKLRKKLASATGGTNFIETVWGRGYVLREPEGAELAE 232


>gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score =  358 bits (918), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 169/223 (75%), Positives = 198/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K YE+D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LR+AK+ TP+ ILSG+++ EDKV+G   GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLRE 223


>gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
 gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
          Length = 233

 Score =  358 bits (918), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/229 (74%), Positives = 201/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSEDEA 229


>gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 233

 Score =  358 bits (918), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A S+ELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSVELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL VNLD KTVE+ G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE   +E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGRNYIETVWGRGYVLREPNDEE 228


>gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Mesorhizobium sp. BNC1]
 gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1]
          Length = 249

 Score =  357 bits (917), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 197/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 19  MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 79  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL  A+GG+NYIETVWGRGYVLRE
Sbjct: 199 GMDEPELKIIDVFICKLRKKLDMASGGQNYIETVWGRGYVLRE 241


>gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 231

 Score =  357 bits (917), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 197/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATEGKNYIETVWGRGYVLRE 223


>gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 233

 Score =  357 bits (915), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 170/229 (74%), Positives = 200/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSDDEA 229


>gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 228

 Score =  356 bits (914), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 171/221 (77%), Positives = 194/221 (87%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+EV
Sbjct: 1   MLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGYEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LRV+K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+GH
Sbjct: 61  LRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSKGH 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G 
Sbjct: 121 AQSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE
Sbjct: 181 DEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLRE 221


>gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 233

 Score =  356 bits (914), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPTEDE 228


>gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis
           X14]
          Length = 233

 Score =  356 bits (913), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/229 (73%), Positives = 201/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEDEA 229


>gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  356 bits (913), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKGLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G N+IETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGHNFIETVWGRGYVLREMGEQE 228


>gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi
           Nb-255]
          Length = 233

 Score =  356 bits (913), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 201/228 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEDE 228


>gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA
           [Rhodopseudomonas palustris CGA009]
 gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Rhodopseudomonas palustris CGA009]
 gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 233

 Score =  355 bits (912), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 201/228 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPSEDD 228


>gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
 gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
          Length = 233

 Score =  355 bits (911), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 169/228 (74%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDDE 228


>gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA
 gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score =  355 bits (911), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/223 (75%), Positives = 196/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLRE 223


>gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
 gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
          Length = 232

 Score =  355 bits (910), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/223 (75%), Positives = 196/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLRE 223


>gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M]
 gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1
           str. 9-941]
 gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19]
 gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457]
 gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str.
           870]
 gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513]
 gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686]
 gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis
           M163/99/10]
 gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94]
 gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1]
 gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1]
 gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13]
 gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str.
           292]
 gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis
           M292/94/1]
 gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33]
 gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1]
 gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94]
 gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str.
           C68]
 gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99]
 gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94]
 gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13]
 gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2]
 gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1]
 gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA
 gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA
 gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA
 gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA
 gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA
 gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus]
 gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus]
 gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M]
 gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94]
 gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13]
 gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1]
 gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2]
 gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 232

 Score =  355 bits (910), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/223 (75%), Positives = 196/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLRE 223


>gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris HaA2]
 gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB5]
          Length = 233

 Score =  355 bits (910), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPTEDD 228


>gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 233

 Score =  354 bits (909), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 196/228 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K+ TP+ ILSG ++IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I T DL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASRGRNYIETVWGRGYVLREPLDDE 228


>gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  354 bits (908), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 197/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A  IELMLK+E+FNVY T+LGE+G++L K YE+D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDSATARGIELMLKTESFNVYTTNLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRVAK+ TP+ ILSG+++ EDKV+G   GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLRE 223


>gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score =  353 bits (907), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 168/229 (73%), Positives = 200/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  ++E 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEEEA 229


>gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score =  353 bits (905), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEHE 228


>gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 232

 Score =  352 bits (903), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 196/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELML+SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLQSEGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+K+STP+ ILSG++ I+DKVRGL  GADDY++KPF+K+ELVARI+AIVRRS+
Sbjct: 61  EVLKTLRVSKVSTPILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTV+V G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL  A GGK+YIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLQTATGGKHYIETVWGRGYVLRD 223


>gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
 gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
          Length = 233

 Score =  351 bits (901), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 198/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLRE 223


>gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
 gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
          Length = 233

 Score =  351 bits (901), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 166/223 (74%), Positives = 198/223 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLRE 223


>gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
 gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
          Length = 233

 Score =  351 bits (900), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDKA+  SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKAMTQSIELMLKSANFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLIVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNINYIDTVWGRGYVLRDPVEE 227


>gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
 gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
          Length = 233

 Score =  351 bits (900), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 167/227 (73%), Positives = 195/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L DI G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227


>gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
          Length = 233

 Score =  351 bits (900), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 163/225 (72%), Positives = 198/225 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A A  IELMLKSE FN YVTDLGE+G++L K Y++D I+LDL L D+PGF
Sbjct: 1   MRVLLIEDDRATAQGIELMLKSEGFNTYVTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ ILSG + I++KVRGL SGADDY++KPF+KEEL+ARI A+VRRS+
Sbjct: 61  DVLKTLRVAKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL++A  G ++IETVWGRGYVLR+ +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATSGDHHIETVWGRGYVLRDPS 225


>gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C]
          Length = 233

 Score =  350 bits (899), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 195/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVE+ GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227


>gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella
           schoenbuchensis R1]
          Length = 233

 Score =  350 bits (898), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK  + SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTSQSIELMLKSGNFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGMSSIEDKVRG   GADDY++KPF+KEEL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLD KTVE+ G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+ +++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPSEE 227


>gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
 gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
          Length = 233

 Score =  350 bits (897), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/223 (73%), Positives = 196/223 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A+  SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+AKI TPV ILSGM++IEDKVRG  SGADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLKTLRLAKIKTPVLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNVNYIDTVWGRGYVLRD 223


>gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
 gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
          Length = 233

 Score =  349 bits (895), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A+  SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSSVNYIDTVWGRGYVLRDPVEE 227


>gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3]
          Length = 233

 Score =  348 bits (894), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 194/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+ KI TPV ILSGM  I+DKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLEKIKTPVLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL++NLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIITTGDLTINLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  K+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPIKE 227


>gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score =  348 bits (892), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 194/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDMIMLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV KI+TPV ILSG + IE KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLD KTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPSE 226


>gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 233

 Score =  348 bits (892), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 165/227 (72%), Positives = 194/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVE+ G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPVEE 227


>gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
 gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
          Length = 233

 Score =  346 bits (887), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 195/229 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK ++ SIELMLKS NFNVY TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTMSQSIELMLKSGNFNVYTTDLGEEGTDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM+SIEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL + + G +YI+TVWGRGYVLR+   + T
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDSVSSGISYIDTVWGRGYVLRDPIAENT 229


>gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
 gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
          Length = 233

 Score =  346 bits (887), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/223 (73%), Positives = 192/223 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDKA   SIELMLKS NFNVY+TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKATTQSIELMLKSANFNVYITDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLT KEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEEVSSSANYIDTVWGRGYVLRD 223


>gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  345 bits (886), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/227 (71%), Positives = 198/227 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDGATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LRVAK++TP+ IL+G+   E+KVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKSLRVAKVNTPILILTGLGDTENKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL+ A  G++YIETVWGRGYVLR+ A++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATDGEHYIETVWGRGYVLRDPAEE 227


>gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 233

 Score =  345 bits (885), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 165/226 (73%), Positives = 193/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV KI+TPV ILSG   IE KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AA GK+YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAADGKHYIETVWGRGYVLRDPAE 226


>gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 235

 Score =  345 bits (885), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 162/226 (71%), Positives = 198/226 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LRV KI+TP+ ILSG++ IE+KVRGL  GADDY++KPF+K+ELVARI A+VRRS+
Sbjct: 61  EVLKSLRVGKITTPILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ + GG +YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASTGGDHYIETVWGRGYVLRDPAE 226


>gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
 gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
          Length = 233

 Score =  344 bits (883), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 164/226 (72%), Positives = 193/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  KI+TPV ILSG   I+ KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPAE 226


>gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
 gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
          Length = 237

 Score =  343 bits (879), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/236 (70%), Positives = 195/236 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ALA SIELMLK+  FNVY+TDLGEDG+++ K YEFD I+LDL L DI GF
Sbjct: 1   MRVLLIEDDRALARSIELMLKAAGFNVYLTDLGEDGVDIGKVYEFDMILLDLSLPDITGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR+++++TPV ILSG   IE KV+ L  GADDY++KPFNK+EL+ARI AIVRRS+
Sbjct: 61  EVLKQLRMSRVNTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGD+ VNLDAKTVEV G R+HLTGKEY M ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL  A GG +YIETVWGRGYVLR+    +    +E A
Sbjct: 181 GLDEPELKIIDVFICKLRKKLQQATGGNHYIETVWGRGYVLRDPRPSQKSSEIEEA 236


>gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10]
 gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 231

 Score =  342 bits (878), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 159/230 (69%), Positives = 199/230 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A + SIELMLKSE FN+Y TDLGE+G++L K Y++D I+LDL L D+PGF
Sbjct: 1   MRVLLIEDDRATSQSIELMLKSEGFNIYTTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ IL+G + I++KVRGL  GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  DVLKTLRVAKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG + VNLDAKTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL+ A  G+++IETVWGRGYVLR+  +++  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATHGEHHIETVWGRGYVLRDPVEEKAS 230


>gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 231

 Score =  342 bits (878), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/230 (71%), Positives = 195/230 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELML SE FNV+ TDLGE+G++L K Y++D I+LDLGL DI G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLLSEGFNVFQTDLGEEGVDLGKIYDYDIILLDLGLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRV+KI TP+ ILSG   ++DKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG L VNLD KTVEV G+R+HLT KEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL+ A  G++YIETVWGRGYVLR+  +++  
Sbjct: 181 GIDEPELKIIDVFICKLRKKLATANTGQHYIETVWGRGYVLRDPKEEQAA 230


>gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
 gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
          Length = 231

 Score =  342 bits (878), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/225 (71%), Positives = 193/225 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LLIEDD  +A SIELML+SE    Y TD GE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRALLIEDDSNVAQSIELMLRSETIVPYTTDTGEEGIDLAKIYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR+LRVAK+ TPV ILSGM  IEDKV+GL +GADDY+ KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLRSLRVAKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS++  GDL+VNLDAKTVEV GH+++LTGKEYQM+ELL LR+ TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVVTVGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL+NA+GG+N+IETVWGRGYV+R  A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASGGQNWIETVWGRGYVVRNPA 225


>gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
 gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
          Length = 231

 Score =  342 bits (876), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 192/223 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRV KI+TP+ ILSG + IE KV+    GADDY++KPF+K+ELVARI A+VRRS+
Sbjct: 61  DVLRTLRVGKINTPIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ AA GK++IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAAADGKHHIETVWGRGYVLRD 223


>gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
 gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
          Length = 233

 Score =  341 bits (874), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 192/223 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K++TPV ILSG S I+ KV+ L  GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ AA G +YIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVAADGNHYIETVWGRGYVLRD 223


>gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score =  340 bits (871), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 163/223 (73%), Positives = 191/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K++TPV ILSG S IE KV+ L  GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  G +YIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVANDGNSYIETVWGRGYVLRD 223


>gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000]
 gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15]
 gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000]
 gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 231

 Score =  339 bits (869), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 193/223 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRVAKI+TP+ ILSG S I+ KV+    GADDY++KPF+K+E++ARI A+VRRS+
Sbjct: 61  DVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRD 223


>gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 231

 Score =  338 bits (867), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 158/223 (70%), Positives = 193/223 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRVAK++TP+ ILSG + I+ KV+    GADDY++KPF+K+E++ARI A+VRRS+
Sbjct: 61  DVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAQGKHHIETVWGRGYVLRD 223


>gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
 gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
          Length = 239

 Score =  337 bits (863), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/228 (70%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRDPQDDQ 228


>gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 233

 Score =  335 bits (860), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 160/225 (71%), Positives = 192/225 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SI+LMLK+  FN+Y+TDLGE+G++L K YE+D IILDL L DI G+
Sbjct: 1   MRVLLIEDDDAVARSIDLMLKAAGFNIYITDLGEEGVDLGKVYEYDLIILDLSLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR+++I+TPV ILSG   IE KV+ L  GADDY++KPFNK+EL+ARI AIVRRS+
Sbjct: 61  EVLKQLRMSRINTPVLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGD+ VNLDAKTVEV+  R+HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL  A GG ++IETVWGRGYVLR+ +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLQKATGGDHFIETVWGRGYVLRDPS 225


>gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
 gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
          Length = 239

 Score =  335 bits (860), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/227 (70%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMSRIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVE  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+  +D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQED 227


>gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
 gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
          Length = 238

 Score =  335 bits (859), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRVSRIETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   +E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQPEE 228


>gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
 gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
          Length = 239

 Score =  335 bits (858), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228


>gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
 gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
          Length = 238

 Score =  334 bits (856), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDINLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG+   E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+   D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQAD 227


>gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 239

 Score =  333 bits (855), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 160/228 (70%), Positives = 187/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228


>gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 239

 Score =  333 bits (854), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLR+  +D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGENYIETVWGRGYVLRDPQED 227


>gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
 gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score =  333 bits (854), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/231 (68%), Positives = 188/231 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+   +   E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQSNGMSE 231


>gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 238

 Score =  333 bits (853), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/227 (69%), Positives = 187/227 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+   D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQGD 227


>gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
 gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
          Length = 239

 Score =  332 bits (852), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/230 (68%), Positives = 188/230 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+  +D   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGDNYIETVWGRGYVLRDPQEDHAT 230


>gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
 gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
          Length = 239

 Score =  332 bits (852), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/228 (69%), Positives = 188/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+  +D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQEDQ 228


>gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 233

 Score =  332 bits (851), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/223 (70%), Positives = 191/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLSAEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRD 223


>gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 233

 Score =  332 bits (851), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 157/223 (70%), Positives = 191/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRD 223


>gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
 gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
          Length = 231

 Score =  332 bits (850), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 159/231 (68%), Positives = 194/231 (83%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+   DE  E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRD--PDEQSE 229


>gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score =  330 bits (847), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 188/229 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229


>gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 237

 Score =  330 bits (847), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 158/229 (68%), Positives = 188/229 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229


>gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
 gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
          Length = 231

 Score =  330 bits (846), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 191/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRD 223


>gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
 gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
          Length = 231

 Score =  329 bits (843), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 193/229 (84%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV   R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR + +DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLR-DPQDEA 228


>gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 237

 Score =  328 bits (841), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 187/225 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ IL+G    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVETPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIRTGKVAVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGQSYIETVWGRGYVLRDPA 225


>gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 235

 Score =  328 bits (841), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 188/223 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRD 223


>gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum
           JL354]
          Length = 231

 Score =  328 bits (840), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 190/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+ + A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPSTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV   R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS+A  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACDGENYIETVWGRGYVLRD 223


>gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 231

 Score =  327 bits (839), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 186/223 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD   A SIELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDDPTTAKSIELMLGAEGFNVYTTDLGEEGLDLGKLYDYDIIALDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+  ++ KVR L  GADDY++KPF++EELVARI AIVRRS+
Sbjct: 61  DVLKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACSGDNYIETVWGRGYVLRD 223


>gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17]
 gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score =  327 bits (838), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 190/223 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLGSEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVA++STPV ILSG++ ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV+  R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLRE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACDGENYIETVWGRGYVLRE 223


>gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 238

 Score =  327 bits (837), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+MLK  N NVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIEMMLKHANLNVYSTDLGEEGMDLAKLYDYDIILLDLNLPDVSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A++ TP+ ILSG+   E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRHLRTARVDTPILILSGLDDPENKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG +SVNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG  YIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDTYIETVWGRGYVLRD 223


>gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
 gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
          Length = 238

 Score =  325 bits (834), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 186/223 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L + Y++D I+LDL L DI G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLARLYDYDLILLDLNLPDINGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I+TP+ ILSG    E+K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRINTPILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A G +NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDENYIETVWGRGYVLRD 223


>gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
 gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus]
 gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
          Length = 237

 Score =  325 bits (833), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ IL+G    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+   GG+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRD 223


>gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 235

 Score =  325 bits (832), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 192/232 (82%), Gaps = 2/232 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG++ ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+   DE  E+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACNGENYIETVWGRGYVLRD--PDEAEEF 230


>gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
 gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
          Length = 237

 Score =  324 bits (831), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 186/223 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A SIELML   N NVY T +GE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILIIEDDPTTAKSIELMLTHANLNVYCTAMGEEGIDLAKLYDYDLILLDLGLPDMTGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R+A+I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQIRLARIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG++ VNLDAKTVEV G ++HLTGKEYQ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG+N+IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGENHIETVWGRGYVLRD 223


>gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
 gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
          Length = 237

 Score =  324 bits (831), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TD+GE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYATDMGEEGIDLAKLYDYDLILLDINLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIDTPILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATMGENYIETVWGRGYVLRD 223


>gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
 gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
          Length = 238

 Score =  324 bits (830), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 157/230 (68%), Positives = 187/230 (81%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TD+GE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLSHANLNVYSTDMGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVA+I TP+ IL+G    + K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRVARIDTPILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A G  NYIETVWGRGYVLR  E ++DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDDNYIETVWGRGYVLRDPEPSQDE 230


>gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 239

 Score =  323 bits (828), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD + A SIELML   N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRVLLVEDDPSTAKSIELMLSHANLNVYTTDLGEEGIDLAKLYDYDLILLDINLPDLNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDNHIETVWGRGYVLRD 223


>gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
 gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
          Length = 237

 Score =  323 bits (828), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L DI G 
Sbjct: 1   MRVLLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLNLPDINGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ IL+G    E K++    GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIDTPILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV G+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS AA G+N IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEAADGENNIETVWGRGYVLRD 223


>gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
 gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
          Length = 238

 Score =  322 bits (826), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+++TP+ ILSG    + K+RG   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVATPILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTV+  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATDGANYIETVWGRGYVLRD 223


>gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family
           protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family
           protein [Rhodobacterales bacterium HTCC2654]
          Length = 237

 Score =  322 bits (825), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYSTDLGEEGVDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K+RG   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAK+VEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATEGENYIETVWGRGYVLRD 223


>gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
 gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
          Length = 238

 Score =  322 bits (824), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N  VY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPRTSKSIELMLSHANLIVYATDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG + VNLDAKTVEV G  +HLTGKEYQMIELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A GG+++IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATGGESHIETVWGRGYVLRD 223


>gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
 gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
          Length = 237

 Score =  322 bits (824), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 154/236 (65%), Positives = 186/236 (78%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+ML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIEMMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+AK+ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLAKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVE     +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+    +  + L  A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLATDGDNYIETVWGRGYVLRDPVAADGPDVLAQA 236


>gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 235

 Score =  321 bits (822), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 186/223 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +I+ ML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIDTMLTTEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+S ++ KVR    GADDY++KPF+++ELVARI A+VRRS+
Sbjct: 61  DVLKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD KTVEV   R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRD 223


>gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 232

 Score =  320 bits (821), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 153/224 (68%), Positives = 183/224 (81%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G EVLR 
Sbjct: 1   MEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGHEVLRQ 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+GHAQS
Sbjct: 61  LRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQS 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
           +I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEP
Sbjct: 121 VIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           E+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 181 ELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 224


>gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
 gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
          Length = 238

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/223 (68%), Positives = 183/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I+TP+ ILSG    E K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIATPILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTV+  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL  A  G NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLCEATDGVNYIETVWGRGYVLRD 223


>gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
 gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
          Length = 238

 Score =  320 bits (819), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 183/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIE+ML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIEMMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMTGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+A++ TP+ ILSG    + K++G   GADDY++KPF +EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLARVDTPILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLD KTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSVATGGDNHIETVWGRGYVLRD 223


>gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
 gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
          Length = 238

 Score =  319 bits (817), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/223 (68%), Positives = 181/223 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ +L+G    E K+R    GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV G  +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATDGENYIETVWGRGYVLRD 223


>gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
 gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
          Length = 234

 Score =  319 bits (817), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 189/223 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ++A SIELML SE + V  T+LGEDG+E+ K Y++D IILDL L DI G+
Sbjct: 1   MRVLLVEDDPSMAKSIELMLNSEGYIVDSTELGEDGLEIGKLYDYDIIILDLMLPDIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+++TP+ ILSG+S ++ K++GL  GADDY++KPF+K ELVAR++AIVRRS+
Sbjct: 61  EVLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S+I TG L+VNLDA+TVEV G  +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVF+CKLRKKL+ A  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLTTATKGENYIETVWGRGYVLRD 223


>gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 234

 Score =  314 bits (804), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 146/223 (65%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A SIELML  + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A++ TP+ +LSG++ +E KVR L  GADDY++KPF++EEL+ARI+A+VRRS+
Sbjct: 61  EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD+KTVE+    +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVF+CKLRKKL+ A   +NYIETVWGRGY+LRE
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILRE 223


>gi|83951898|ref|ZP_00960630.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
 gi|83836904|gb|EAP76201.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
          Length = 233

 Score =  313 bits (803), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 145/218 (66%), Positives = 181/218 (83%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD   + SIE+ML   N NVY T LGE+G++L + Y++D I+LDLGL D+ G EVLR 
Sbjct: 1   MEDDPTTSKSIEMMLSHANLNVYTTSLGEEGVDLARLYDYDLILLDLGLPDMTGHEVLRQ 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR+A+I TP+ ILSG    ++K++G   GADDY++KPF+++ELVARI AI+RRS+GH+QS
Sbjct: 61  LRLARIETPILILSGSDDTDNKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSKGHSQS 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
           +I TG+++VNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEP
Sbjct: 121 VIRTGEINVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+
Sbjct: 181 ELKIIDVFICKLRKKLSQATGGDNHIETVWGRGYVLRD 218


>gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score =  313 bits (803), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 146/223 (65%), Positives = 185/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A SIELML  + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A++ TP+ +LSG++ +E KVR L  GADDY++KPF++EEL+ARI+A+VRRS+
Sbjct: 61  EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD+KTVE+    +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVF+CKLRKKL+ A   +NYIETVWGRGY+LRE
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILRE 223


>gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510]
          Length = 246

 Score =  313 bits (803), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 149/223 (66%), Positives = 187/223 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ++A SIELML +E F V  TDLGEDG+E+ K Y++D IILDL L DI G+
Sbjct: 1   MRVLLVEDDSSVAKSIELMLNTEGFIVDSTDLGEDGLEIGKLYDYDIIILDLMLPDIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+++TP+ ILSG++ +++K++GL  GADDY++KPF+K EL+ARI+AIVRRS+
Sbjct: 61  EVLRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S+I TG L+VNLD +TVEV    +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVF+CKLRKKL+ A  G NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLAAATQGDNYIETVWGRGYVLRD 223


>gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2083]
 gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 238

 Score =  310 bits (793), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 145/223 (65%), Positives = 180/223 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SI++ML   N NVY T  GE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIDMMLTHANLNVYTTSFGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E K++G   GADDY++KPF+++EL+ARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV+   +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEP++KIIDVFICKLRKKL  A G  +YIETVWGRGYVLR+
Sbjct: 181 GMDEPKLKIIDVFICKLRKKLCEATGEDSYIETVWGRGYVLRD 223


>gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
 gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
          Length = 233

 Score =  309 bits (792), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 185/227 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +A ++ELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ GF
Sbjct: 1   MRVLLIEDDNTVASALELMLSAEGFNVYSTDLGEEGLDLGKSYDYDLICLDLNLPDMHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+ ++ TPV ILSG+S ++ KVR    GAD+Y++KPF+K ELVARI A+VRRS+
Sbjct: 61  DVLKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I  G ++VNLD K  EV G RIHLTGKEY M+ELL+LR+ +TLTKEMFLNHLY 
Sbjct: 121 GHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL+ A GG+NYIETVWGRGY+LR   ++
Sbjct: 181 GIDEPELKIIDVFICKLRKKLTLACGGENYIETVWGRGYMLRAPGEE 227


>gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 238

 Score =  308 bits (788), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 149/223 (66%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ ++ +IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLVVEDDQLMSRAIESMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+I TPV ILSG+S  + K++GL SGADDY++KPF+K ELVARI+AIVRRS+
Sbjct: 61  EVLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG LSVNLDA+TV V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY 
Sbjct: 121 GHAQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+
Sbjct: 181 GIDEPELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRD 223


>gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 181/223 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLVVEDDRMMAQVIETMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR ++I TPV ILSG++  + K++GL  GADDY++KPF+K ELVARI+AIVRRS+
Sbjct: 61  EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG LSVNLD +TV+V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY 
Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+
Sbjct: 181 GIDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRD 223


>gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/219 (66%), Positives = 180/219 (82%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ ++ +IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+EVLR
Sbjct: 1   MVEDDQLMSRAIEAMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYEVLR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR A+I TPV ILSG+S  + K++GL SGADDY++KPF+K ELVARI+AIVRRS+GHAQ
Sbjct: 61  RLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGHAQ 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           S+I TG LSVNLDA+TV V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY G DE
Sbjct: 121 SVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGIDE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           PE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+
Sbjct: 181 PELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRD 219


>gi|163747146|ref|ZP_02154502.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
 gi|161379707|gb|EDQ04120.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score =  301 bits (772), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+A+I TP+ ILSG    E+K+RG   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLARIDTPILILSGADDTENKIRGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIETGQVAVNLDAKTVSVNDSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG++YIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGESYIETVWGRGYVLRD 223


>gi|110679831|ref|YP_682838.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
 gi|109455947|gb|ABG32152.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
          Length = 239

 Score =  301 bits (771), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + S+ELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLSNA  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATNGENYIETVWGRGYVLRD 223


>gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 239

 Score =  301 bits (770), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 142/223 (63%), Positives = 181/223 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD A A SI+L+LK E + V  TD GEDG+E+ K Y++D +I+DL L D+ G 
Sbjct: 1   MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIVDLMLPDMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR ++I+TPV ILSG++  + KV+GL  GADDY++KPF+K EL+AR++AIVRRS 
Sbjct: 61  EVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRSM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS++  G + VNLDA+TV V G  +HLTGKEY ++ELL+LRK +TLTKE FLNHLY 
Sbjct: 121 GHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAQATGGTNYIETVWGRGYVLRD 223


>gi|163731900|ref|ZP_02139347.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
 gi|161395354|gb|EDQ19676.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
          Length = 239

 Score =  300 bits (769), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 184/223 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + S+ELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLSNA  G+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATDGENYIETVWGRGYVLRD 223


>gi|83942324|ref|ZP_00954785.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
 gi|83953543|ref|ZP_00962264.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83841488|gb|EAP80657.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83846417|gb|EAP84293.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
          Length = 239

 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 153/225 (68%), Positives = 183/225 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N N Y TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNTYTTDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR++KI TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLSKIQTPILILSGSDDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I  G +SVNLDAK+V V    +HLTGKEYQM ELLSLRK +TLTKEMFLNHLY 
Sbjct: 121 GHSQSVINVGRVSVNLDAKSVTVGDKPVHLTGKEYQMFELLSLRKGSTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPA 225


>gi|254488127|ref|ZP_05101332.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
 gi|214044996|gb|EEB85634.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
          Length = 239

 Score =  296 bits (758), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 151/223 (67%), Positives = 180/223 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+ML   N N Y TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIEMMLTHANLNTYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RR +
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRYK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIQTGQVSVNLDAKTVTVDDKTVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRD 223


>gi|218673989|ref|ZP_03523658.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 186

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/186 (74%), Positives = 163/186 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPE 186
           G DEPE
Sbjct: 181 GMDEPE 186


>gi|189183277|ref|YP_001937062.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180048|dbj|BAG39828.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
          Length = 245

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 175/229 (76%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIEL L +E        LG+DGIE+ K Y++  IILDL L DI G+
Sbjct: 1   MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL +LR  KI TPV ILSG+S+I++K++GL  GADDYI+KPF+ +EL AR++AI+RRS+
Sbjct: 61  EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH++++I  G LS+NLD ++V +      +   IHLT KEY+++ELL+++K T LTKEMF
Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNMPIHLTNKEYKILELLAIKKGTVLTKEMF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+HLY G DEPE+KIIDVFICKLR+KL  A+ G N+IETVWGRGY+  E
Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229


>gi|148284743|ref|YP_001248833.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
 gi|146740182|emb|CAM80430.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
          Length = 245

 Score =  274 bits (701), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 133/229 (58%), Positives = 175/229 (76%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIEL L +E        LG+DGIE+ K Y++  IILDL L DI G+
Sbjct: 1   MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL +LR  KI TPV ILSG+S+I++K++GL  GADDYI+KPF+ +EL AR++AI+RRS+
Sbjct: 61  EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH++++I  G LS+NLD ++V +      +   IHLT KEY+++ELL+++K T LTKEMF
Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNIPIHLTNKEYKILELLAIKKGTVLTKEMF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+HLY G DEPE+KIIDVFICKLR+KL  A+ G N+IETVWGRGY+  E
Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229


>gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
 gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
          Length = 237

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 170/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDEPEMANLIELTLASEGIVCDKVSVGLEGLRLGKLGRYDLMILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VE+ G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGGK+YI+TVWGRGY+L+E
Sbjct: 181 SLDEPEMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYMLKE 223


>gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
 gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
          Length = 237

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 171/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ + K   +D +ILD+ L DI GF
Sbjct: 1   MRVLLIEDELEMANLIELTLASEGIVCDKASVGVEGLRIGKVCGYDLVILDIMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+ +   +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 237

 Score =  272 bits (695), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 171/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLDA++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLN+LY 
Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia
           prowazekii str. Madrid E]
 gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia
           prowazekii]
 gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22]
          Length = 237

 Score =  268 bits (686), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IE+ L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 TVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|157964137|ref|YP_001498961.1| transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
 gi|157843913|gb|ABV84414.1| Transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
          Length = 243

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 7   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 67  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 127 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 187 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 229


>gi|67458448|ref|YP_246072.1| transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
 gi|67003981|gb|AAY60907.1| Transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
          Length = 237

 Score =  268 bits (684), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE++  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEEEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SG DDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+     +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHVASVFRFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+T+WGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTIWGRGYMLKE 223


>gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
 gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
          Length = 237

 Score =  267 bits (683), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  +A+ IE+ L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MKVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKIGIYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G +IHLT KEY ++ELL +R+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
 gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
          Length = 237

 Score =  267 bits (683), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 131/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|229586314|ref|YP_002844815.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
 gi|228021364|gb|ACP53072.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
          Length = 237

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 167/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS +     K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLMDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|238650537|ref|YP_002916389.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
 gi|238624635|gb|ACR47341.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
          Length = 237

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  KILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLVLRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|254454488|ref|ZP_05067925.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus
           238]
 gi|198268894|gb|EDY93164.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus
           238]
          Length = 246

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/189 (67%), Positives = 154/189 (81%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
           ML   N NVY TDLGE+GI+L K +++D I+LD+ L D+ G EVLR LR+++I TP+ IL
Sbjct: 1   MLSHANLNVYSTDLGEEGIDLAKLFDYDLILLDINLPDMNGHEVLRQLRLSRIETPILIL 60

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDA 138
           SG    E K++G   GADDY++KPF++EELVARI AI+RRS+GHAQS+I TG ++VNLDA
Sbjct: 61  SGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSIIKTGVIAVNLDA 120

Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198
           KTVEV    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEPE+KIIDVFICKLR
Sbjct: 121 KTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLR 180

Query: 199 KKLSNAAGG 207
           KKL+ A GG
Sbjct: 181 KKLTEATGG 189


>gi|157827976|ref|YP_001494218.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932668|ref|YP_001649457.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
 gi|157800457|gb|ABV75710.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907755|gb|ABY72051.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
          Length = 237

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITDFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVEGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|157803257|ref|YP_001491806.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
 gi|157784520|gb|ABV73021.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
          Length = 237

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 166/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED   +A+ IEL L SE        +G + + L K   +D +ILDL L DI  F
Sbjct: 1   MRVLLIEDKPEMANLIELTLASEGIVCDKASVGVEDLRLAKVSGYDLVILDLMLPDINSF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G   GADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+     +SVNLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY+
Sbjct: 121 GHVASVFRFDKVSVNLDTRSVEVEGKKVHLTNKEYAVLELLILRRGTILTKEMFLNHLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEP +KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPAIKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|34580940|ref|ZP_00142420.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
 gi|28262325|gb|EAA25829.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
          Length = 237

 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 166/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI G 
Sbjct: 1   MRVLLIEGEPKMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AA G++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAACGRDYIDTVWGRGYMLKE 223


>gi|218515993|ref|ZP_03512833.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli 8C-3]
          Length = 168

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/168 (72%), Positives = 147/168 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TT
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTT 168


>gi|149915232|ref|ZP_01903760.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. AzwK-3b]
 gi|149810953|gb|EDM70792.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. AzwK-3b]
          Length = 257

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/195 (62%), Positives = 155/195 (79%), Gaps = 4/195 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   A SI++ML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTAKSIDMMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIDTPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGRINVNLDAKTVDVEGRTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFIC 195
            R      +I ++IC
Sbjct: 181 ARK----LLIFLYIC 191


>gi|114766934|ref|ZP_01445854.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis
           HTCC2601]
 gi|114540841|gb|EAU43903.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601]
          Length = 179

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 145/179 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L DI G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDIDGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+ISTP+ ILSG    + K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARISTPILILSGADDTDSKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFL HLY
Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLKHLY 179


>gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 258

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 119/223 (53%), Positives = 160/223 (71%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   A  + +MLK+          GE+ +EL   Y++D IILD+ L D+ G+
Sbjct: 11  MRVLLVEDDLTTARGVAMMLKASAMIADTAGTGEEALELAGLYDYDIIILDIMLPDMEGY 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  ++ TPV ILSG+S  + KV+    GADD+I+KPF+++EL+ARI+AI+RR++
Sbjct: 71  EVVRRLRGNRVETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAK 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +Q  +  G L++NL ++ V V    +HLTGKEY ++ELL LRK   LTKE+FLNHLY 
Sbjct: 131 GFSQPTLSVGPLTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DEPE KIIDVFICKLRKKL+ A  G+  I TVWGRGYVLR+
Sbjct: 191 GIDEPEAKIIDVFICKLRKKLAQAGAGE-LIGTVWGRGYVLRD 232


>gi|58040125|ref|YP_192089.1| cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
 gi|58002539|gb|AAW61433.1| Cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
          Length = 247

 Score =  246 bits (628), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 168/231 (72%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++ D++ A ++  +L++ +F V  T  GE+ IE+ + Y++D ++L+L L D+ G+
Sbjct: 1   MRILLVDSDQSAATTLSQILRTASFTVDHTPSGEEAIEMLRHYDYDVVVLELMLNDLEGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A+I+TP+ +LS +   + K+R    GADDY++KP++  ELVAR++A++RRSR
Sbjct: 61  EVIRRARAARITTPILVLSALLRPQAKIRAFSMGADDYMTKPYDAGELVARLQAVMRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+  +  G+L ++L+ K V V G  +HLTGKEY ++ELL +RK + LTK+ FLNHLY 
Sbjct: 121 GFAEPKLRVGNLELDLNGKNVTVDGAPLHLTGKEYAILELLVIRKGSVLTKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLR+KL N   G N I TVWGRGY+LRE   D+T E
Sbjct: 181 GIDEPEMKIIDVFICKLRRKLQNVGAG-NLIATVWGRGYILRE---DDTAE 227


>gi|269958512|ref|YP_003328299.1| putative response regulator [Anaplasma centrale str. Israel]
 gi|269848341|gb|ACZ48985.1| putative response regulator [Anaplasma centrale str. Israel]
          Length = 294

 Score =  241 bits (616), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 132/232 (56%), Positives = 164/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     +
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A GGKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANGGKNYIETVWGRGYVLKECASDD 234


>gi|42520575|ref|NP_966490.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410314|gb|AAS14424.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 256

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55
           MRILLIEDD+  A ++   L S+ +F   VT   D   + +     Y +D +ILD+ L  
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           DI G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AI
Sbjct: 60  DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           VRR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFL
Sbjct: 120 VRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           NHLY+G DEP + KI+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 180 NHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|58696682|ref|ZP_00372233.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630493|ref|YP_002727284.1| two component transcriptional regulator [Wolbachia sp. wRi]
 gi|58537144|gb|EAL60252.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592474|gb|ACN95493.1| two component transcriptional regulator [Wolbachia sp. wRi]
          Length = 256

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 171/234 (73%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55
           MRILLIEDD+  A ++   L S+ +F   VT   D   + +     Y +D +ILD+ L  
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           DI G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AI
Sbjct: 60  DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           VRR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFL
Sbjct: 120 VRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           NHLY+G DEP + KI+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 180 NHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|56417080|ref|YP_154154.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
 gi|56388312|gb|AAV86899.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
          Length = 290

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     +
Sbjct: 1   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 61  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 232


>gi|296117363|ref|ZP_06835953.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976129|gb|EFG82917.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 256

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 160/225 (71%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+E DKA+       L++  F V     G D I + K Y++D  +L+LGL D+ G 
Sbjct: 1   MRVLLVEPDKAMMDKEASQLQAVGFMVDHATSGHDAIAMLKLYDYDIAVLELGLPDMEGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R  R A+I+TP+ ILS   S + KV+   +GADDY+++P++  EL AR++A++RRS+
Sbjct: 61  DVVRRCRAARIATPILILSAQDSAQAKVKAFSTGADDYVTRPYDPMELTARMQAVIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+++  +  G L ++LD++ V V G  +HLTGKEY ++ELL LRK   LTK+ FLNHLY 
Sbjct: 121 GYSEPTLQAGALRLSLDSRDVSVNGRSVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL   AGG+N I TVWG+GY+L+++A
Sbjct: 181 GMDEPEMKIIDVFICKLRKKLQK-AGGENLITTVWGQGYMLKDDA 224


>gi|222475446|ref|YP_002563863.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
 gi|222419584|gb|ACM49607.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
          Length = 292

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     +
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234


>gi|254995251|ref|ZP_05277441.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Mississippi]
 gi|255003432|ref|ZP_05278396.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004551|ref|ZP_05279352.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Virginia]
          Length = 292

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     +
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234


>gi|225631101|ref|ZP_03787828.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591203|gb|EEH12358.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 256

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/234 (54%), Positives = 170/234 (72%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVT---DLGEDGIELCKFYEFDAIILDLGLT- 55
           MRILLIEDD+  A ++   L S+ +F   VT   D   + +     Y +D +ILD+ L  
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDY-YDLVILDIHLPG 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           DI G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AI
Sbjct: 60  DIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAI 119

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           VRR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFL
Sbjct: 120 VRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFL 179

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           NHLY+G DEP   KI+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 180 NHLYNGLDEPSNNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|58584853|ref|YP_198426.1| response regulator [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419169|gb|AAW71184.1| Response regulator consisting of a CheY-like receiver domain and
           wHTH-type DNA-binding domain [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 256

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/233 (53%), Positives = 167/233 (71%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D    +       +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDHYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFL+
Sbjct: 121 RRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLD 180

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP + KI+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   +E
Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYVDEE 233


>gi|88607685|ref|YP_505647.1| DNA-binding response regulator [Anaplasma phagocytophilum HZ]
 gi|88598748|gb|ABD44218.1| DNA-binding response regulator CtrA [Anaplasma phagocytophilum HZ]
          Length = 276

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 128/232 (55%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L +E          +D  G  + K  ++D +ILD+     I
Sbjct: 1   MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+A+VR
Sbjct: 61  DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K V   G+ IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E+  D+
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKEHPCDD 232


>gi|190570997|ref|YP_001975355.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019514|ref|ZP_03335320.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357269|emb|CAQ54693.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994936|gb|EEB55578.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|222825037|dbj|BAH22195.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Cadra cautella]
          Length = 256

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 125/241 (51%), Positives = 168/241 (69%), Gaps = 21/241 (8%)

Query: 1   MRILLIEDDKALA-----------HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAII 49
           MRILLIEDD+  A           H  +++  ++++N  +   G D    C    +D +I
Sbjct: 1   MRILLIEDDQVSARTVVNALTSDGHFCDVVTSAQDYNNNMVSSGGD----C----YDLVI 52

Query: 50  LDLGLT-DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           LD+ L  DI G+++L  LR AKI  PV ILS +S+   K +GL  GADDY++KPF+K EL
Sbjct: 53  LDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAANHKAKGLGYGADDYLTKPFHKSEL 112

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +ARI+AIVRR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK   
Sbjct: 113 LARIKAIVRRTKGHPESVIKIGNMNINFDHRIVEVKGKTVHLTNKEYSMIELLALRKGAV 172

Query: 169 LTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A  G ++IETVWGRGYVL+E   D
Sbjct: 173 LTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGISHIETVWGRGYVLKEYVDD 232

Query: 228 E 228
           E
Sbjct: 233 E 233


>gi|73667430|ref|YP_303446.1| response regulator receiver: C terminal [Ehrlichia canis str. Jake]
 gi|72394571|gb|AAZ68848.1| Response regulator receiver: C terminal [Ehrlichia canis str. Jake]
          Length = 266

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     I
Sbjct: 1   MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDY++KPF+K EL+ARI+AIVR
Sbjct: 61  DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++++NLD K VE  G  +HLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227


>gi|57239513|ref|YP_180649.1| hypothetical protein Erum7860 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161592|emb|CAH58520.1| putative response regulator component of a two-component regulatory
           system [Ehrlichia ruminantium str. Welgevonden]
          Length = 267

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     I
Sbjct: 1   MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDIVILDIHFPGKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDY++KPF+K EL+ARI+AIVR
Sbjct: 61  DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++++NLD K VE  G  +HLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227


>gi|68171373|ref|ZP_00544767.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88658273|ref|YP_507798.1| DNA-binding response regulator [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67772423|gb|AAY79413.1| transcriptional activator protein [Ehrlichia chaffeensis]
 gi|67999198|gb|EAM85854.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ehrlichia chaffeensis str. Sapulpa]
 gi|88599730|gb|ABD45199.1| DNA-binding response regulator [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 265

 Score =  234 bits (596), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     I
Sbjct: 1   MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDY++KPF+K EL+ARI+AIVR
Sbjct: 61  DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++++NLD K VE  G  +HLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 227


>gi|58579495|ref|YP_197707.1| hypothetical protein ERWE_CDS_08310 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617548|ref|YP_196747.1| hypothetical protein ERGA_CDS_08210 [Ehrlichia ruminantium str.
           Gardel]
 gi|58417160|emb|CAI28273.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
 gi|58418121|emb|CAI27325.1| Unknown [Ehrlichia ruminantium str. Welgevonden]
          Length = 283

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 127/227 (55%), Positives = 160/227 (70%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLT-DI 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+     I
Sbjct: 17  MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDIVILDIHFPGKI 76

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDY++KPF+K EL+ARI+AIVR
Sbjct: 77  DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 136

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++++NLD K VE  G  +HLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 137 RTRGHPESIVRVGNIAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSH 196

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E
Sbjct: 197 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKE 243


>gi|60117371|gb|AAX14447.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila mojavensis]
          Length = 221

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 147/186 (79%), Gaps = 2/186 (1%)

Query: 45  FDAIILDLGLT-DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           +D +ILD+ L  DI G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF
Sbjct: 13  YDLVILDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPF 72

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           +K EL+ARI+AIVRR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+L
Sbjct: 73  HKSELLARIKAIVRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLAL 132

Query: 164 RKNTTLTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           RK T LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A  GK++IETVWGRGYVL+
Sbjct: 133 RKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLK 192

Query: 223 ENAKDE 228
           E   D+
Sbjct: 193 EYIDDD 198


>gi|258543656|ref|YP_003189089.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634734|dbj|BAI00710.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637790|dbj|BAI03759.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640844|dbj|BAI06806.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643899|dbj|BAI09854.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646954|dbj|BAI12902.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650007|dbj|BAI15948.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652997|dbj|BAI18931.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656051|dbj|BAI21978.1| two component response regulator CtrA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 261

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 154/233 (66%), Gaps = 1/233 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+E++   + +I   L   +F+V +    ++ IEL + Y++   IL L   DI G+
Sbjct: 1   MRILLLENNFTSSRTIFSALTKASFSVDIAQCDQEAIELLRNYDYGLAILHLQQPDIHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  K++TPV ++S +++ E K +   +GADDYI  PF+  EL ARI+AI+RR  
Sbjct: 61  EILSTLRSLKLATPVIVISPVNNPEVKTKAFAAGADDYILDPFDATELTARIQAILRRVH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +   GDL+VN ++ TV V    +HLTGKE+ ++ELL LRK    TKE FLNHLY 
Sbjct: 121 GYAHPVAQIGDLTVNFNSHTVTVNNQPVHLTGKEFAILELLVLRKGIAQTKETFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
           GRDEP++KIIDVFICKLRKKL  AAG  N I TVWGRGY+L +    +  E +
Sbjct: 181 GRDEPDIKIIDVFICKLRKKL-QAAGAGNLISTVWGRGYILNDPQASQAYESM 232


>gi|209543371|ref|YP_002275600.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531048|gb|ACI50985.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 244

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+E+D   AH     L++  + +     G + +E+ + Y++D  +L++ L DI G+
Sbjct: 1   MRVLLVENDGGTAHGTSSALRAIGYALDHVATGHEAVEMLRRYDYDLALLEMVLPDIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRA R A+  TP+  LS +   + KVR   +GADDYI+KP++  EL ARI+A+VRRS+
Sbjct: 61  EVLRATRAARRETPIVALSSLGGPQAKVRAFSAGADDYITKPYDAPELAARIQAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+ Q ++  G L ++LD++ V V G  +HLTGKEY ++ELL LRK T LTK  FL+HLY 
Sbjct: 121 GYCQPILHAGPLRLSLDSREVTVNGRPVHLTGKEYLVLELLLLRKGTVLTKYAFLDHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICK+RKKL  A  G + I TVWG+GY+LR + 
Sbjct: 181 GMDEPEMKIIDVFICKVRKKLQQAGAG-SLIATVWGQGYMLRGDG 224


>gi|330991888|ref|ZP_08315837.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp.
           SXCC-1]
 gi|329760909|gb|EGG77404.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp.
           SXCC-1]
          Length = 241

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 106/225 (47%), Positives = 148/225 (65%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+E +          ++   F V   D G D + + K Y +D  ++++ L D+ GF
Sbjct: 1   MRILLVEPNARKVEETTRHMEKAGFTVDHVDTGHDALGMLKSYNYDLAVMNVDLPDVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A++ TPV +L+   S   KVR   +GADDY+++P+   EL AR++A++RRS+
Sbjct: 61  EVIRISRAARVPTPVMVLAEEKSATAKVRAFSTGADDYVTRPYESMELTARMQAVIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+++  +  G L + L ++ V V G  +HLTGKEY ++ELL LRK   LTK+ FLNHLY 
Sbjct: 121 GYSEPTLRAGHLELCLGSREVSVHGQGVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL  A  G+  I TVWG+GYVLR+ A
Sbjct: 181 GMDEPEMKIIDVFICKLRKKLQGAGAGQ-LIATVWGQGYVLRDEA 224


>gi|329113823|ref|ZP_08242594.1| Cell cycle response regulator CtrA [Acetobacter pomorum DM001]
 gi|326696833|gb|EGE48503.1| Cell cycle response regulator CtrA [Acetobacter pomorum DM001]
          Length = 261

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 154/235 (65%), Gaps = 1/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+E++   + +I   L   +F+V +    ++ IEL + Y++   IL L   DI G+
Sbjct: 1   MRILLLENNCTSSRAIFSALTKASFSVDMVQCDQEVIELLRNYDYGLAILHLQHPDIHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  K++TPV ++S +++ E K +    GADDY++ PF+  EL ARI+AI+RR  
Sbjct: 61  DILSTLRSLKLTTPVIVISPVNNPEVKTKAFTVGADDYLTDPFDSTELTARIQAILRRVH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  G+L+VN ++  V V    +HLTGKE+ ++ELL LRK    TKE FLNHLY 
Sbjct: 121 GYAHPIVHIGNLTVNFNSHAVTVNNQPVHLTGKEFAILELLVLRKGIAQTKETFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           GRDEP++KIIDVFICKLRKKL  A  G N I TVWG+GY+L +    + C  + T
Sbjct: 181 GRDEPDIKIIDVFICKLRKKLQTAGVG-NLISTVWGKGYILNDPQAPKACVSMPT 234


>gi|119386803|ref|YP_917858.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377398|gb|ABL72162.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 184

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 147/179 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML + ++NVY TD+GE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTARSIELMLTNASYNVYRTDMGEEGIDLAKLYDYDLILLDLDLPDMHGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R+++I TP+ IL+G    E K+RG   GADDY++KPFN++ELVARI+AI+RRS+
Sbjct: 61  EVLRQIRMSRIDTPILILTGSDDTESKLRGFGFGADDYMTKPFNRDELVARIQAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           GH+QS+I TG++ VNLDA++VEV G  ++LTGKEYQ++ELLSLRK TTLTKEMFLNH Y
Sbjct: 121 GHSQSVIRTGEMVVNLDARSVEVGGRAVNLTGKEYQILELLSLRKGTTLTKEMFLNHFY 179


>gi|294083655|ref|YP_003550412.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292663227|gb|ADE38328.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 234

 Score =  201 bits (510), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 97/231 (41%), Positives = 148/231 (64%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD  +A  I + L        V    E  +   +    DA++LD+ L D  G 
Sbjct: 1   MNILIVEDDPVIADVIGMTLDEAGHFSTVAHTIEASLAELRHNRIDAVLLDINLPDGNGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R   +  P+ ++SG S I+DK+  L +GAD Y++KPF++ EL+A + AI+RR+ 
Sbjct: 61  RLARLIRKHHLPMPILVVSGNSGIDDKIAALGAGADGYLTKPFDRYELMANLDAIIRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +++  G+L+V+L     ++   +++LTGKE++++E L+LRK + L+K+ FLNHLY 
Sbjct: 121 GHSSAVVTAGNLTVDLSRNYAKIGDKQLNLTGKEFRIVEFLALRKGSVLSKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE KIIDVF+CKLR+KL NA      I+TVWG+GY+LRE    E  E
Sbjct: 181 GIDEPEPKIIDVFMCKLRRKLDNAGASGLNIDTVWGQGYILRETPDFEIAE 231


>gi|23007529|ref|ZP_00049361.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 122

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/117 (81%), Positives = 104/117 (88%)

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           + AIVRRS+GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTK
Sbjct: 1   MHAIVRRSKGHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTK 60

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           EMFLNHLY G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  + E
Sbjct: 61  EMFLNHLYGGMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 117


>gi|99034436|ref|ZP_01314439.1| hypothetical protein Wendoof_01000759 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 156

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 111/133 (83%), Gaps = 1/133 (0%)

Query: 97  DYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ 156
           DY++KPF+K EL+ARI+AIVRR++GH +S+I  G++++N D + VEV+G  +HLT KEY 
Sbjct: 1   DYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYS 60

Query: 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
           MIELL+LRK T LTKEMFLNHLY+G DEP + KI+DVF+CKLRKKL +A  GK++IETVW
Sbjct: 61  MIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVW 120

Query: 216 GRGYVLRENAKDE 228
           GRGYVL+E   D+
Sbjct: 121 GRGYVLKEYIDDD 133


>gi|24475509|dbj|BAC22721.1| czcR [Wolbachia endosymbiont of Callosobruchus chinensis]
          Length = 183

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/183 (50%), Positives = 127/183 (69%), Gaps = 4/183 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYE--FDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+ +F   VT   +    +    E  +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNEDYYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+AR +AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARXKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VE +G  +HLT KEY MIELL+LRK T LTKEMFLN
Sbjct: 121 RRTKGHPESVIKIGNININFDHRIVEXKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLN 180

Query: 177 HLY 179
           HLY
Sbjct: 181 HLY 183


>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 224

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L K Y++D  I+D+G+  + GF
Sbjct: 1   MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A IS P+ IL+     ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ 
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S++  ++ + + G  + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+VF+ +LRKKL + AG    IET+ GRGY +  N
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPAGDLKPIETLRGRGYRINRN 223


>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 225

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA+ I+   + E + V VT  GEDG+   K   +DAI+LD+ L  I G 
Sbjct: 4   MRLLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPIIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   ISTPV IL+   S++DKV GL SG+DDY++KPF+ EEL++R+RA++RR  
Sbjct: 64  SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I   DL ++   KT++    RI L+ KEY ++E L+L KN  +++   + HLYD
Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDVFI ++R K+ +    K  I T  G GY L+E
Sbjct: 184 EDFDLYSNVIDVFINRIRNKI-DKDFDKKLIHTYRGIGYSLKE 225


>gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 224

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD AL   +   LK++N+ V     GE+ + L + YEFD  I DLGL DI G 
Sbjct: 1   MKLLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+ +LR   I  PV IL+     +DKV GL +GADDY+ KPF  EEL+ARI A++RR+ 
Sbjct: 61  DVITSLRDEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A+  IV G +S+N   + V+V G  + LT  EY+++E L L  +  ++K     HLY 
Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +++VF+ +LRKK+ +  G    I+T+ GRGY LR +
Sbjct: 181 QDYDRDSNVLEVFVGRLRKKI-DPDGTIQPIDTLRGRGYRLRAD 223


>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  168 bits (425), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 137/227 (60%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +I+  L    + V V   GE+G+   + Y++D  I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   IS P+ IL+   S +DKV GL +GADDY+SKPF  EELVARI A++RRS 
Sbjct: 61  SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  ++     I+L+G EY++ E L L   +  +K   + H+YD
Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +I+VFI +LRKKL +       IET+ G+GY LR+ A D
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYQLIETLRGQGYRLRQLAPD 226


>gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ
           [Glaciecola sp. HTCC2999]
          Length = 224

 Score =  167 bits (424), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 139/225 (61%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++ +L+   F+V + D GE    L K Y +DA++LDLG+  + G 
Sbjct: 1   MRILLVEDDSQLLMQLDQLLQQAGFSVDLADDGEKAQYLLKEYTYDAVVLDLGIPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPVCIL+   + E KV GL +GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  SVLKFARENDIKTPVCILTARDTWEQKVLGLDAGADDYLTKPFHHQELLARVNALIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++L  + V++    + LT  EY+++E L L ++  ++K     H+YD
Sbjct: 121 GHASSELTCGPIQLHLTQQKVKIDDQELELTAYEYKVLEYLMLNRDKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +I+VF+ +LRKK+      K  IET+ GRGY L   A
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKIDPTNTLKP-IETLRGRGYRLFSPA 224


>gi|168179997|ref|ZP_02614661.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum
           NCTC 2916]
 gi|182668954|gb|EDT80930.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum
           NCTC 2916]
          Length = 223

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  LA+S+++ L+   F++ V++ G DG E     E+D I+LDL L DI G 
Sbjct: 1   MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   I TPV I++    +E    GL +GADDYI+KPF   EL ARI AI+RR  
Sbjct: 61  EILNYLRSESIETPVIIITARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G L +N   +TVE++   + L  KE+ ++E +  R    ++ E    H+YD
Sbjct: 121 GRTNPIINIGKLQLNPITRTVEIENKPVALVSKEFDILEYICYRHPAVVSSEEIAEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V I +L+KKLSNA+ GK  +  + G+GYVL
Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220


>gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
 gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
          Length = 222

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 142/219 (64%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDDK LA  IE  LK +NF V V + GE+G+ L +  ++D +I+D  L  + G 
Sbjct: 1   MKVLLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWMLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ LR   I+TP  IL+  S ++DKV GL S ADDY++KPF  EEL+AR++A+ RR++
Sbjct: 61  DLIKTLRKEDINTPTLILTAKSDLDDKVEGL-SVADDYLTKPFEFEELIARLKALFRRNK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  GDL +NLD K V+  G  I LT K++++++LL + KN  +T EM   +L++
Sbjct: 120 KLPENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLWE 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E +  +I   I  LRKK+ +    K  ++T+ G GY
Sbjct: 180 MNEERDSNVITAHISYLRKKI-DKGFDKELLKTIRGMGY 217


>gi|170756446|ref|YP_001780968.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169121658|gb|ACA45494.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 223

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  LA+S+++ L+   F++ V++ G DG E     E+D I+LDL L DI G 
Sbjct: 1   MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   I TPV I++    +E    GL +GADDYI+KPF   EL ARI AI+RR  
Sbjct: 61  EILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G L +N   +TVE++   + L  KE+ ++E +  R    ++ E    H+YD
Sbjct: 121 GRTNPIINIGKLQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V I +L+KKLSNA+ GK  +  + G+GYVL
Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220


>gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 225

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 137/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   I+     + F V     G+DG  + K Y  DA ++D+GL D  G 
Sbjct: 1   MRILVVEDEVKLCEQIQQFFADKGFAVDTAHTGQDGYYMGKEYPIDAAVIDIGLPDFSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR  K++ P+ IL+  S  ++KV GL++GADDY+ KPF+ EEL ARI A++RRS 
Sbjct: 61  ELIKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   ++ ++  A+ V V G +  LT  EY+++E L  RK   ++K +   H+YD
Sbjct: 121 GVAHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL +  G +  IET+ GRGY++
Sbjct: 181 EDFDRDSNVLEVFIGRLRKKL-DPDGTRKPIETLRGRGYLI 220


>gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 237

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L ++++  L   NF + V   GEDG+     Y +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR  +I  P+ IL+   S +DKV GL +GADDY++KPF+ EEL+AR+ A++RRS 
Sbjct: 61  ELITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N     V+  G  ++L+  EY++ E   L      +K + + H+YD
Sbjct: 121 GKASPLVYNGPFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL   N  G    IET+ G+GY L+  A+ E
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQLG---LIETLRGQGYRLKPLARGE 227


>gi|209883402|ref|YP_002287259.1| FeuP protein [Oligotropha carboxidovorans OM5]
 gi|209871598|gb|ACI91394.1| FeuP protein [Oligotropha carboxidovorans OM5]
          Length = 221

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 136/221 (61%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  ++  L+   + V V   GE    L +  ++DAI+LDLGL  + G 
Sbjct: 1   MRVLVVEDEPRIAADLKKALERTLYAVDVAHDGEKAWFLGETEDYDAIVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A ++TP+ IL+      +KV G+ +GADDY++KPF  EEL+AR+ AI RR+ 
Sbjct: 61  SVLRRLREAGVTTPIVILTARDGWREKVEGINAGADDYLTKPFQMEELLARLGAITRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA ++I  G+L V+  A+T  + GH++ L+  EY+++  L + +  TL++   L HL+D
Sbjct: 121 GHASAIIKAGELEVDTRARTAMLSGHQLALSAMEYRLLAYLLMHRGRTLSQGELLEHLHD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   I+  I +LRKKL     G   IET  GRGY +
Sbjct: 181 GDTERDGNAIEALIARLRKKL-----GFPLIETHRGRGYCI 216


>gi|153938117|ref|YP_001390694.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934013|gb|ABS39511.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318768|gb|ADF99145.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 223

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  LA+S+++ L+   F++ V++ G DG E     E+D I+LDL L DI G 
Sbjct: 1   MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   I TPV I++    +E    GL +GADDYI+KPF   EL ARI AI+RR  
Sbjct: 61  EILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G+  +N   +TVE++   + L  KE+ ++E +  R    ++ E    H+YD
Sbjct: 121 GRTNPIINIGNFQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V I +L+KKLSNA+ GK  +  + G+GYVL
Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNAS-GKEILINIRGKGYVL 220


>gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 231

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 138/222 (62%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V  +G  + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VFI +LRKKL +     N IET+ G+GY LR
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLR 221


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 143/224 (63%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+K LA++++  L+ E + V V   GE+G  L + Y +D IILD+ L  + G 
Sbjct: 1   MKILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + TP+ +L+   S+EDKV+GL SGADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I   DL ++L+ K V+  G+ I LT KE++ + LL+L KN  ++KE  ++ LY 
Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  I+V I +LRKK+      K  I T+ G GY+++++
Sbjct: 181 TDRFVSINAIEVLINRLRKKIDKDYPLK-LIHTIKGFGYMIKDD 223


>gi|148260824|ref|YP_001234951.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326404218|ref|YP_004284300.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
 gi|146402505|gb|ABQ31032.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325051080|dbj|BAJ81418.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
          Length = 250

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 131/199 (65%), Gaps = 2/199 (1%)

Query: 30  TDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVR 89
           TD+ E+ ++L +FYE+DA++L +  T     E++R LR+A +  P+  ++ + S   ++R
Sbjct: 31  TDI-EEALDLTRFYEYDAVVLRVTDTRPAEIELIRRLRLAGLRCPIMAVAHLLSEATRLR 89

Query: 90  GLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH 149
            L++G DD I    + EE+  R++  VRRSRG   S +  G++ +N++AK + V    I 
Sbjct: 90  ILEAGVDDLIVSAISHEEIFLRVQNQVRRSRGFQSSSLAVGNVEINMNAKKIFVSQTEIG 149

Query: 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN 209
           LT KEYQ++E+L+LRK   L+KE  L+HLY G DEP  KIIDVFICK+RKKL  AAG  +
Sbjct: 150 LTKKEYQIVEILALRKGCVLSKEAILDHLYGGLDEPNPKIIDVFICKIRKKLL-AAGADD 208

Query: 210 YIETVWGRGYVLRENAKDE 228
            I+T WGRGY++ +  + E
Sbjct: 209 LIQTNWGRGYMIVDRRESE 227


>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 227

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/228 (41%), Positives = 143/228 (62%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L+ E + V     GE+ I   +  E+DAIILD+ L  + GF
Sbjct: 1   MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  K   P+ +L+   +I+DKV+GL  GADDY+ KPF  EEL+ARIR ++RR+ 
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A ++I   +L V+LDAKTV   G  I L+G+EY ++E L   K   L +E   +H+++
Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E    +IDV+I  LRKK+ ++   K  I T+ G GYVLR + ++E
Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPK-LIHTIRGLGYVLRVDNENE 227


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 143/225 (63%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  IEL L+ E FNV  +  G +G++L    ++D I+LDL L  + G E
Sbjct: 3   RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TP+ +L+   S+ DKV GL SGADDY+SKPF  EEL+ARIRA+ RR  G
Sbjct: 63  VCRRIRAAK-ETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L V+LDA+TV     +I LT +E+ ++ +     N  LT+E+ L+ +
Sbjct: 122 KKEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     E  ++DV++  LR K+ +    ++YI+TV G GYV+R+
Sbjct: 182 WELGSYAETNVVDVYVRYLRNKI-DKPSEESYIQTVRGTGYVMRK 225


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 137/219 (62%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR    + PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A+VRR+ 
Sbjct: 61  ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++ ++  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPEGELKPIETVRGRGY 218


>gi|241068623|ref|XP_002408489.1| sensory transduction histidine kinase, putative [Ixodes scapularis]
 gi|215492477|gb|EEC02118.1| sensory transduction histidine kinase, putative [Ixodes scapularis]
          Length = 158

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 112/158 (70%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158
           GHA S+     +SVNLDA++VEV G ++HLT KEY ++
Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAIL 158


>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score =  165 bits (418), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L K Y +D  I+D+G+  + GF
Sbjct: 1   MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A IS P+ IL+     ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ 
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S++  ++ + + G  + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VF+ +LRKKL +  G    IET+ GRGY
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPTGELKPIETLRGRGY 218


>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 224

 Score =  165 bits (417), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 142/225 (63%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDDK L+H I   LK E F V      E+G+    + E+D I+LD+ L  + G+
Sbjct: 1   MKVLIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIMLPKMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  K+ TP+ +LS    IEDKV+GLQ GADDY++KPF+  EL+ARI A++RR++
Sbjct: 61  EVIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTK 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S +   DL+++L  K V   G +I+LT KE+++++ L       +T+ M L +++
Sbjct: 121 TIEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVF 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  ++DV I +LR+K+ +    K  I TV G GYVL+ +
Sbjct: 181 DIDFDIDSNVVDVHIHRLREKI-DKRFEKKLIHTVRGFGYVLKSD 224


>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 227

 Score =  164 bits (415), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 143/228 (62%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   LK E + V     GE+ +   +  E+DAIILD+ L  + GF
Sbjct: 1   MRLLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  K   P+ +L+   +I+DKV+GL  GADDY+ KPF  EEL+ARIR ++RR+ 
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A +++   +L V+LDAKTV      I L+G+EY ++E L   K   L++E   +H+++
Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E    +IDV+I  LRKK+ ++   K  I T+ G GYVLR + ++E
Sbjct: 181 YDYEGGTNVIDVYIRYLRKKIDDSYTPK-LIHTIRGLGYVLRVDNENE 227


>gi|294055543|ref|YP_003549201.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614876|gb|ADE55031.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 222

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 134/222 (60%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L  ++   L+ E F       GE+G+     +++DAI+LD+ L  I G+
Sbjct: 1   MRVLVIEDEAELRETVVETLREEGFATDYCGDGEEGLYKALHWDYDAILLDIMLPKINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R A+  TPV +L+    I+D+++GL  GADDY+ KPF+  E++AR RAI RRS 
Sbjct: 61  EVLKRIRDAQKETPVMMLTARDGIDDRIKGLNQGADDYLPKPFDLAEMIARTRAIARRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G++ VN  ++ V + G  I LT +EY + EL   + +  +T++    HL+D
Sbjct: 121 GQRNPELRIGNVIVNTTSRQVTLNGQPIELTAREYALTELFVRKVDEVVTRDYIYEHLFD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    I+DV+I KLR+KL     GK +I T+ G GY+ R
Sbjct: 181 ENEDSLSNILDVYIYKLRQKL-----GKQFIRTMRGHGYITR 217


>gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
 gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
          Length = 224

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V+      +G+ + K Y  D  I+DLGL D  G 
Sbjct: 1   MRILIVEDDPLLSHHLKTELSELGHQVHCAQTAYEGLFVAKEYPNDIAIVDLGLPDRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R A I  P+ IL+G ++ +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIRDIRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G ++++L AK V + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 121 GFVKPEIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + E +   I+V + +LRKKL+  AG +N I TV G+GY+ 
Sbjct: 181 DQ-EGDPNTIEVMMSRLRKKLTQ-AGQENPISTVRGQGYIF 219


>gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 228

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 141/219 (64%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + V   + GE+G+ L   Y  +A I+D+GL+   G 
Sbjct: 1   MRILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ALR      P+ IL+  SS +DKVRGL++GADDY++KPF  EEL AR++A++RR+ 
Sbjct: 61  DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A+ V + G  I LT  EY+++E L   +   L+K++  + LY 
Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ +  +++V I +LR+KL + AG    IET+ GRGY
Sbjct: 181 HDEDRDSNVLEVMIGRLRRKL-DPAGTLKPIETMRGRGY 218


>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score =  164 bits (414), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++  +L+   F V + D GE+ + L +   FDA++LDLGL  + G 
Sbjct: 1   MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A I  PV IL+      +KV G ++GADDY++KPF  EE+V R++A++RR+ 
Sbjct: 61  GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + +V G L ++  +    V+G  + LT +EY+++  L LR+  T+++   ++H+YD
Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV + +LR+KL     G   I TV G GY L
Sbjct: 181 RDSDRDSNVIDVLVGRLRRKL-----GAPLIHTVRGLGYRL 216


>gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 231

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 139/231 (60%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +++  L   N+N+ V D GE G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRVLLVEDDIELQTNLKQHLVDANYNIDVADDGEIGLFQGTEYRYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  +I  P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  ALIKTLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G  S+N  +  ++     I L+G EY++ E   L     ++K +   H+YD
Sbjct: 121 GKASPVVNNGPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  +I+VFI +LRKKL +     + IET+ G+GY L +  K E  +
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNSFSLIETLRGQGYRLTQMQKTEQSD 230


>gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL +     N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227


>gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 227

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 139/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL +     N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227


>gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 243

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 142/223 (63%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L++ N+++ +   GE G+     + +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  ++S P+ +L+   S +DKV GL +GADDY++KPF+ EEL+AR++A++RR+ 
Sbjct: 61  SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A SL+  G  SVNL   ++EV+ H   ++L+  EY++ E L L      +K +   H+
Sbjct: 121 GKASSLVSNGPFSVNL--TSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           YD   + +  +I+VFI +LRKKL +       IET+ G+GY L
Sbjct: 179 YDQDFDLDSNVIEVFIRRLRKKL-DPDNQYQLIETLRGQGYRL 220


>gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
 gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
          Length = 233

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L + N+ V   D GE G+   K Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQSNLKQHLLAANYTVDTADDGEIGLFQGKEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I  P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  ALITELRALTIEFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  +   G  I L+G EY+++E   L      +K +   H+YD
Sbjct: 121 GKASPVINNGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL +A      IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DADNQLGLIETLRGQGYRL 220


>gi|88608551|ref|YP_506128.1| DNA-binding response regulator [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600720|gb|ABD46188.1| DNA-binding response regulator [Neorickettsia sennetsu str.
           Miyayama]
          Length = 265

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56
           MRIL+++D++ +   ++ ++ S  +         D   L       Y++D IILD  L D
Sbjct: 1   MRILVVDDEQKVTDYVKSIITSVGYVCDTASCCRDASALINSSKGDYQYDLIILDRVLPD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAI 115
             G +++  LR   I TPV   S +SS E++++    GADD+I+K   +K E +ARIRA+
Sbjct: 61  GDGLDMILNLRCKNIKTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAV 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-KNTTLTKEMF 174
           +RR   H  S    G++ V+   +  +++G  + LT KEY M+EL+ L  +   ++K+ F
Sbjct: 121 LRRCFSHHFSKFKLGNMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++HLY   +  E KIIDVF CKLR KL+    G +YIETVWGRGY L EN
Sbjct: 181 ISHLYSNNEPTEQKIIDVFACKLRSKLAAYNDGVSYIETVWGRGYTLNEN 230


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   +  +D IILD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  TPV +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAIVRR  
Sbjct: 61  EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   +  +D IILD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  TPV +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAIVRR  
Sbjct: 61  EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K LA+ I+   + E F V +   GEDG+   + Y +D I+LD+ L  I G 
Sbjct: 1   MRILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    +TPV +L+   +++DKV GL SG+DDY++KPF+ EEL++R +A++RR  
Sbjct: 61  TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I   +L ++   KTV+     I L+ KEY ++E L+  KN  L++ M + H+Y+
Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDVFI ++R K+ +    K  + T+ G GY L+E
Sbjct: 181 EEFDFDSNVIDVFINRIRNKI-DKNFDKKLVHTIRGMGYALKE 222


>gi|116252811|ref|YP_768649.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257459|emb|CAK08555.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 222

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/221 (42%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L+  I  +L+SENF V +   GED +       FD  ILDLGL  I G 
Sbjct: 1   MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R    + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  SVLKDWREGDRNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKVEELVLRLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G L+ +    T E+ G  + LT  E++++  L LRK   + +      +YD
Sbjct: 121 GHAASRLVCGALTFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   I+V I +LRKKL     G + IETV GRGY+L
Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GADRIETVRGRGYML 216


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218


>gi|218509392|ref|ZP_03507270.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 111

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 95/111 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVAR
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVAR 111


>gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 225

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+++L   ++   K E F V  +  G++G+ L K  ++DA I+DLGL ++ G 
Sbjct: 1   MRLLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR A    P+ +L+      DKV GL+SGADDY++KPF  +EL+AR++A++RRS 
Sbjct: 61  DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G   ++  AK+V V G  + LT  EY  +E L   KN  ++K     HLY+
Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VFI +LRKKL +  G +N I T  G GY
Sbjct: 181 QDYDRDSNVIEVFIRRLRKKL-DPDGERNPILTQRGLGY 218


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 135/229 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ LA  I+  LKS+++ V +   G+ G+EL + +E+D I+LDL L  + G 
Sbjct: 1   MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  +  R     TP+ +++G      KV+ L +GADDY+ KPFN +EL+AR+RA++RR  
Sbjct: 61  QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+  G L++N  +  V  +G  IHLT KEY ++EL    +N   ++   + HL+ 
Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             + P    +   I  LR+KL  A    N IETV+G GY L +N  D+T
Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKNVLDQT 229



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  L   I+  L+   F++ + +  +   ++ +    D +ILD+ + +I G E
Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R        P+  LSG    +    G Q+GADDYI KP    ELV RI
Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611


>gi|254796619|ref|YP_003081455.1| DNA-binding response regulator CtrA [Neorickettsia risticii str.
           Illinois]
 gi|254589857|gb|ACT69219.1| DNA-binding response regulator CtrA [Neorickettsia risticii str.
           Illinois]
          Length = 264

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56
           MRIL+++D++ +   ++ ++ S  +         D   L       Y++D IILD  L D
Sbjct: 1   MRILVVDDEQKVTDYVKSIITSVGYVCDTASCCRDASALINSSKGDYQYDLIILDRVLPD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAI 115
             G +++  LR   I TPV   S +SS E++++    GADD+I+K   +K E +ARIRA+
Sbjct: 61  GDGLDMILNLRCKNIKTPVIFFSALSSYENRIKAFDFGADDFIAKSELHKGEFLARIRAV 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-KNTTLTKEMF 174
           +RR   H  S    G++ V+   +  +++G  + LT KEY M+EL+ L  +   ++K+ F
Sbjct: 121 LRRCFSHHFSKFKLGNMLVDFHMQVCKMRGKVVQLTNKEYSMLELMCLHGRGAIISKDKF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++HLY   +  E KIIDVF CKLR KL+    G +YIETVWGRGY L EN
Sbjct: 181 ISHLYSNNEPTEQKIIDVFACKLRSKLAAYNDGVSYIETVWGRGYTLNEN 230


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  + G 
Sbjct: 1   MRILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R  +   P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   ++ G + +N  ++ V +    + LTG EY+++E L +     ++K     H+YD
Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKK+ +  G  N IET+ GRGY LR
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKI-DPDGTLNPIETLRGRGYRLR 221


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 132/224 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   LK + + V V + GE G +L + + +D I+LD+ L  + G 
Sbjct: 1   MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++    LS+N +   V      +HLT KEY ++EL     +  L++ M L+HL+ 
Sbjct: 121 TSSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL N     ++IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224


>gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 258

 Score =  162 bits (410), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 138/221 (62%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  +   L+S  F V   + G DG+       FD +I+D  L ++ G  
Sbjct: 36  RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +LR  ++STPV +LS +S+++D+V GL++G DDY++KPF  EEL ARI A++RR   
Sbjct: 96  LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G LS++L  +TV   G  I L  +E++++E L  R N  LT+ M L  +++ 
Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ +  G +  I+++ G G++LR
Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDD-PGAQPLIQSIRGTGFMLR 255


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  162 bits (409), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +AH I+  LK E   V ++  GEDG  L +  ++D IILDL L    G 
Sbjct: 1   MKILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR + +STPV +L+   S+EDKVRGL +GADDY++KPF  EEL+AR+RA++RR  
Sbjct: 61  VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL ++  ++ V  QG  I LT KEY ++E L       L++ +   H++D
Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +PE  +IDV+I  LR K+ +     + + T+ G+GY+L ++
Sbjct: 181 MNFDPESNVIDVYISHLRSKI-DKGFDVSLLHTLRGQGYLLTDD 223


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score =  161 bits (408), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 134/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L   Y +D  I+D+GL  + GF
Sbjct: 1   MRILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R   I  PV IL+     ++KV GL +GADDY++KPF+ EEL+AR++A++RR+ 
Sbjct: 61  EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G +S++  A+ + V    + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+VF+ +LRKKL      K  IET+ GRGY +  N
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKLDPENSFKP-IETLRGRGYRINRN 223


>gi|159186289|ref|NP_355953.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159141423|gb|AAK88738.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 220

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 131/222 (59%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  I   L++ENF V +   GED         +D  ILDLGL  I G 
Sbjct: 1   MRVLLVEDDGDLSKRIAANLRAENFVVDIAQNGEDAEHAGLTELYDVAILDLGLPRIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++ R A+ + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  SVLKSWRAAQRNLPVLVLTARDGWPDKVASFKAGADDFLTKPFKVEELVLRLRALVRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  G L  +    T E  G  + LTG E++++  L LRK   + +   +  +Y+
Sbjct: 121 GHAASIVTCGSLVFDAQLGTFEQNGLPLKLTGLEWRVLSCLILRKEVVVDRRELIERVYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G  E +   I+V I +LR+K+     G  +IETV GRGY+L+
Sbjct: 181 GDAEVDSNSIEVIIARLRRKI-----GAEHIETVRGRGYMLK 217


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  161 bits (408), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 138/219 (63%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + V  +  G++G+ L   Y  DA I+D+GL    G 
Sbjct: 1   MRILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      P+ IL+  SS +DKV+GL+ GADDY++KPF  EEL AR+RA++RR+ 
Sbjct: 61  EIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A++V V G  I LT  EY+++E L   +   L+KE   + LY 
Sbjct: 121 GIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEELVCHRGEILSKESLADALYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ +  +++V I +LR+KL +  G    IET+ GRGY
Sbjct: 181 HNEDRDSNVLEVMIGRLRRKL-DPEGTLKPIETMRGRGY 218


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 131/224 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   LK + + V V + GE G +L + + +D I+LD+ L  + G 
Sbjct: 1   MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS+N +   V      +HLT KEY ++EL     +  L++ M L+HL+ 
Sbjct: 121 TSLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL N     ++IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224


>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 227

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+GI + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ALR      PV IL+  SS + KV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  DLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +A G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DADGDLKPIETVRGRGY 218


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/223 (40%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L + I   LK   ++V     GE+ ++  ++ E+D +ILD+ +  + GF
Sbjct: 1   MKILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR     T V +L+   S +DKV+GL  GADDYI KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + ++ G+L +N   K+V   G +I LTGKEY+++E L   KN  L+++    H++D
Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +  IIDV I  +RKK+ +  GGK  I T  G GYV+++
Sbjct: 181 FDYEGDSNIIDVLIKNIRKKI-DVEGGKQIIYTKRGLGYVIKD 222


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score =  161 bits (407), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   LK   F V V   G DG+ L +   +DA ++D+ L  + G 
Sbjct: 1   MRILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            ++  LR  KI+TPV ILS   S++D+VRGLQ+G DDY++KPF+  EL+ARI A++RRS 
Sbjct: 61  TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    S +  G+L+++L  + V+  G  I L  +E+ ++E L   K   ++K   L H+Y
Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  ++DV +C++R K+ +    +  I TV G GYVL+E 
Sbjct: 181 DYSFDPQTNVVDVLVCRVRNKV-DKDFDRKLIHTVRGMGYVLKEQ 224


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score =  160 bits (406), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   LK  N++V     GE+ ++   + ++D II D+ + ++ G+
Sbjct: 1   MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ LR +K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL ARIR ++RR+ 
Sbjct: 61  EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V   G  I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    I+DV I  +RKKL N    K  I T  G GY ++E
Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGT-DKTIIYTKRGLGYFVKE 222


>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 227

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 134/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ +     FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 218


>gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
 gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
          Length = 225

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L  ED+  L   +   L  E F+V     G + I+  +F ++D  ILD+ L    GF
Sbjct: 1   MRLLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIMLPHADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K +TPV  L+   SIED+V+GL SGA+DY+ KPF+ EEL+ARIR + R   
Sbjct: 61  AILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +++++   DL +NL + TV   G  I LT KEYQ++E L   K   L++E   NH+++
Sbjct: 121 NLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +    K  I TV G GYV+RE+
Sbjct: 181 YDYEGGTNVIDVYIRYLRKKIDDGFDTK-LIHTVRGAGYVIRED 223


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I   LK  NF+V     GE+ +E   +  +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   SIEDK++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL +++  KTV   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DIGNSKPLIHTKRGLGYVLKED 223


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  LA  +EL LK E F+V+V   G +G+EL    ++D I+LD+ L  + G E
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A + ++T  DL V++ A+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV++  LR+KL +    + YI+TV G GYV+R
Sbjct: 183 FDAEVETNVVDVYVRYLRQKL-DEHDKERYIQTVRGTGYVMR 223


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I   LK  NF+V     GE+ +E  ++  +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   SI+DK++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL +++  KTV   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DVGNSKPLIHTKRGLGYVLKED 223


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 133/224 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A+++   LK   + V +   GE G +  + + +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TPV +L+   +  DKV+GL +GADDY+ KPF+  EL ARIRA++RRS 
Sbjct: 61  ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N ++  V   GH +HLT KEY+++EL     +  L++   L+HL+ 
Sbjct: 121 TTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL       + IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLKAVGASPDLIETVYGLGYRLKQS 224


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L H +   L+   + V +   GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221


>gi|241205325|ref|YP_002976421.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859215|gb|ACS56882.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 229

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/231 (41%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L+  I  +L+SENF V +   GED +       FD  ILDLGL  I G 
Sbjct: 1   MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R    + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  SVLKGWREGDRNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKVEELVLRLRALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G L  +    T E+ G  + LT  E++++  L LRK   + +      +YD
Sbjct: 121 GHAASRLVCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG------KNYIETVWGRGYVLRENA 225
           G  E +   I+V I +LRKKL    GG      +  IETV GRGY+L   A
Sbjct: 181 GDAEVDSNSIEVIIARLRKKL----GGERIETMRGRIETVRGRGYMLTAAA 227


>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
          Length = 223

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ L+   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  LA  +EL LK E F+V+V   G +G+EL    ++D I+LD+ L  + G E
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A + ++T  DL V++ A+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV++  LR+KL +    + YI+TV G GYV+R
Sbjct: 183 FDAEVETNVVDVYVRYLRQKL-DEHDKERYIQTVRGTGYVMR 223


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 137/222 (61%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   LK  N++V     GE+ ++   + E+D II D+ + ++ G+
Sbjct: 1   MKILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR +K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  EFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V   G  I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    I+DV I  +RKKL N    K  I T  G GY ++
Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGT-DKTIIYTKRGLGYFVK 221


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|222106228|ref|YP_002547019.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737407|gb|ACM38303.1| two component response regulator [Agrobacterium vitis S4]
          Length = 222

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/221 (41%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L+  I   L+SENF V +   GED +       FD  +LDLGL  I G 
Sbjct: 1   MRVLLVEDDEDLSGRIATALRSENFVVDIARNGEDALHAGLTELFDIAVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R ++ + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  TVLKGWRESERNLPVLVLTARDGWPDKVSSFKAGADDFLAKPFKIEELVLRLRALVRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G L  +    T E+ G  + LT  E++++  L LRK   + +      +YD
Sbjct: 121 GHASSRIQCGALMFDAQLGTFELNGLPVKLTALEWRVLSCLMLRKEMVVDRRELNERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   I+V I +LRKKL     G   IETV GRGY+L
Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GSEIIETVRGRGYML 216


>gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 222

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/223 (40%), Positives = 138/223 (61%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD A+A  +EL LK E F + + + GE G+      +FD I+LD+ L  I G E
Sbjct: 3   RILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLPKISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR +K +TPV +L+    + DKV GL SGA+DY++KPF  EEL+ARIR I R    
Sbjct: 63  VLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFREK-- 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +  G+L++N D   V V+G  + LT KEY+++  L + +N  L++E  + +++  
Sbjct: 121 TTNNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  I+DVFI  +R+KL +    +  I+T+ G GYV+++N
Sbjct: 181 EYYGDTNIVDVFIKNIRRKLEDVMDVR-MIQTIRGIGYVIKDN 222


>gi|332715492|ref|YP_004442958.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325062177|gb|ADY65867.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 220

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L+  I   L++ENF V +   GED         +D  +LDLGL  I G 
Sbjct: 1   MRILLVEDDTDLSRRIATSLRAENFVVDIAQNGEDAEHAGLTELYDVAVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++ R A+ + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  SVLKSWRAAQRNLPVLVLTARDGWPDKVASFKAGADDFLTKPFKVEELVLRLRALVRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G L  +    T E  G  + LT  E++++  L LRK   + +   +  +Y+
Sbjct: 121 GHAASAITCGSLIFDAQLGTFEQDGLPLKLTALEWRVLSCLILRKEVVVDRRELIERVYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G  E +   I+V I +LR+K+     G  +IETV GRGY+L+
Sbjct: 181 GDAEVDSNSIEVIIARLRRKI-----GAGHIETVRGRGYMLK 217


>gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 225

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 133/219 (60%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++A+   +E   KS+ F +   + GE+G+ L   Y++D  I+D+GL  + G 
Sbjct: 1   MKLLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + P+ IL+     +DKV GL++GADDY+ KPF+ EEL AR  A++RRS 
Sbjct: 61  EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G +++N   K+V + G  + LT  EY  +E L+L     ++K +   HLY 
Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +  +I+VFI +LRKKL +  G    I+TV G GY
Sbjct: 181 QDFERDSNVIEVFIGRLRKKL-DPDGDLKPIKTVRGLGY 218


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 133/225 (59%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   +   L+   + V +   GEDG  L     +DAIILDLGL ++ G 
Sbjct: 1   MRVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R     TPV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S ++ GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G++ I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYSLDDPA 220


>gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
 gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
          Length = 231

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL L+ E +   +   G  G++     ++D I+LDL L ++ G E
Sbjct: 6   RILIIEDEKNLARFVELELQHEGYETKICFDGRSGLQAATDEDWDVILLDLMLPELNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R LR  K  TP+ I++   S+ D+V GL  GADDY+ KPF  EE++ARIRA+ RR   
Sbjct: 66  VVRRLRQVK-KTPIIIMTARDSVMDRVTGLDQGADDYVVKPFEIEEILARIRALFRRLSI 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R   Q+++   DL +  + +TV   G  I LT +EY+++ +L    N  L++E+ L
Sbjct: 125 EEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLTKREYELLLMLMENINVVLSREVLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++  + E E  +IDV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 185 NQVWGYKMEVETNVIDVYIRYLRNKI-DIPGRESYIQTVRGTGYVMR 230


>gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 223

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ L+   DL ++L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +L KKL +     N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLCKKL-DPDNQYNLIETLRGQGYRLRVISPDE 227


>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ ++   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L   I   LK  N++V     GE  ++   + E+D II D+ +  I G+
Sbjct: 1   MKILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LRV   STPV +L+   S++DK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V      I LTGKEY+++E L   K   +++E  LNH++D
Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    IIDV +  +RKKL +    K  I T  G GY ++E+
Sbjct: 181 YDYEGVSNIIDVIVKNIRKKL-DVGSKKPIIHTKRGLGYFVKED 223


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L+  ++  L    + V     GE+   L     +D IILDLGL  I G 
Sbjct: 1   MRILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R     TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA+VRR+ 
Sbjct: 61  SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ L+V G L ++  A    V G  + LT  EY+++  L + +N  +++   + HLYD
Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKK+ N     + IETV G GY L+
Sbjct: 181 QDFDRDSNTIEVFMGRLRKKIGN-----DRIETVRGLGYRLK 217


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  159 bits (401), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 131/219 (59%), Gaps = 6/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  S+   L+ EN+ V     G +G +     E+D I+LD+ L  + G+
Sbjct: 12  MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ LR  K S PV +L+   +++D+V+GL  GADDY++KPF+ EEL+ARIRA++RR+ 
Sbjct: 72  EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++   DLS++  A+ V  +G  + +T +EY +IE L+L +   +++     HL+D
Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D     ++DV +  LRKKL+        I T  G GY
Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLA-----PELITTRRGHGY 224


>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 223

 Score =  158 bits (400), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 138/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+  +   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 237

 Score =  158 bits (399), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 133/223 (59%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +++  L   NF + V   GEDG+     + +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDLELQKNLKQHLLDANFTLDVASDGEDGLFQGCEHNYDAGIIDVGLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR  ++  P+ IL+   S +DKV GL +GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  ELITRLREQEVDFPILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N     V+  GH + L+  EY++ E   L      +K + + H+YD
Sbjct: 121 GKASPLVHNGPFSINTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL   N  G    IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQLG---LIETLRGQGYRL 220


>gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 224

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   D  E+G+   + Y  D  I+DLGL D  G 
Sbjct: 1   MRILIVEDDPILSHHLKSQLSELGNQVQCADTAEEGLFFAQNYPNDIAIVDLGLPDRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIKDMRSKDLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V +    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK +   G +N I T+ G+GY+    A+
Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELQAQ 224


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   +   L+   + V + D GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221


>gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 135/226 (59%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  +    E+DA++LDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RRS 
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + ++ GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLNDPAQ 221


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 132/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   +   L+   + V + D GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADVITTIRGLGYSLDEPGR 221


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score =  157 bits (398), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ L   I   LK  N++V     G++ ++   + E+D II D+ + ++ G+
Sbjct: 1   MRILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR  K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  EFIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V      I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNIIQIEDVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    I+DV I  +RKKLSN       I T  G GY ++
Sbjct: 181 YNYEGASNIVDVIIKNIRKKLSNGEDS-TIIYTKRGLGYFVK 221


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L   +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 88/219 (40%), Positives = 136/219 (62%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD +LA +++ +L+ E ++V +   G  G EL    EFD I+LDL L  + G 
Sbjct: 1   MRLLLIEDDASLAKALKEVLEKEGYHVSLALDGRRGYELALCEEFDLIVLDLLLPSMGGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR + + TPV  L+ +S +  KV     GADDY++KPF+ EEL+AR+RAI+RRS 
Sbjct: 61  EVLKSLRESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G++ + ++ K V V G  + LT  EY ++E L L +   +++E  +     
Sbjct: 121 GSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIERCLS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R EPE   ++VFI ++RKKL    G K++I++  G GY
Sbjct: 181 YRYEPESNTVEVFISRIRKKL----GIKDFIKSSRGFGY 215


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL+ED+ ALA  +   L       Y  D+  DG++ C   E   +DA+ILDLGL  +
Sbjct: 1   MRILLVEDEAALAAQVRASLAEAG---YAVDVAADGLDACHLGEQEPYDAVILDLGLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR  R A++  PV IL+   S  +KV G+ +GADDY++KPF  EEL+ARIRA++R
Sbjct: 58  DGLSVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G     +  G + +N  A  V V G  + LT  E+++++ L       ++K     H
Sbjct: 118 RAHGMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +Y    + +   I+VF+ +LR+KL     G + IETV G+GY +R  +  + 
Sbjct: 178 IYAQDFDRDSNTIEVFVGRLRRKL-----GVDVIETVRGQGYRMRPPSPPQP 224


>gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 226

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 134/222 (60%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  ++   L   N+ + +   GE+G+   + Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I  P+ IL+   + +DKV GL +GADDY++KPF+ EELVAR++A++RR+ 
Sbjct: 61  ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G  S+N  +  ++     + L+G EY++ E   L      +K + + H+YD
Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VFI +LRKKL +  G    IET+ G+GY L+
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPNGQYGLIETLRGQGYRLK 221


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  L   +  +L    + V     GEDG+ L +   +DAI+LDLGL  + G 
Sbjct: 1   MRALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A +S PV IL+      +KV G  +GADDY++KPF+ EEL+AR+RA+ RR+ 
Sbjct: 61  TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S ++ GDLS++     V +    I LT  E++M+  L   ++  +++   + H+YD
Sbjct: 121 GHSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VF+ +LRKK+     G N IETV G GY L +  + E+ 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GSNRIETVRGLGYRLVDPGETESS 225


>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 223

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K LA+ ++  L+  +F V   + GE+G+ +   + +D ++LD+ L  + GF
Sbjct: 1   MRILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPLMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R + +  P  +L+   +IEDKVRGL  GADDY+ KPF+  EL ARIRA++RR +
Sbjct: 61  EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H Q+ +   DLS++L    +   G  I LT KE+ ++E      N  LT+     H++D
Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DVF+ +LR K+      K  I T+ G GY+++E
Sbjct: 181 YNFDSFTNVVDVFVNRLRNKIDKNRETK-LIHTIKGVGYIMKE 222


>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
 gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
          Length = 251

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 137/234 (58%), Gaps = 1/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L  +++  L   +++V   + G +G+ L   + +D  I+D+GL ++ G 
Sbjct: 1   MRLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR  K   PV IL+   S +DKV GL++GADDY++KPF+ EEL+AR+ A+ RRS+
Sbjct: 61  ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G++ +N   K V +    I LT  EY  +E L+L K   ++K     HLYD
Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
              + +  +I+V I +LRKKL      K  + T  G+GY L EN  + T E  E
Sbjct: 181 QDFDLDSNVIEVLIGRLRKKLDPNNIHKPIV-THRGQGYRLTENTAENTTEKTE 233


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K LA +I+  L+ E F V +   G +G++L   Y +D IILD+ L  + G 
Sbjct: 1   MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ R LR   K   P+ +L+ + S+E++V GL  GADDY+ KPF+  ELVAR+RA++RR+
Sbjct: 61  EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   Q  +  GDL +NL  + V  +G  ++L+ KE+ ++EL         ++E  L+ L+
Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   EP   I+DV++  LRKKL    G    IETV   GY L++
Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLK-PFGYDEKIETVHNIGYRLKK 223


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 128/224 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   L+++N+ + V   GE G E  + +E+D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R A  + PV +L+   S +DKV GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS+N +   V    H +HLT KEY ++EL         ++   L HL+ 
Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I  +R+KL       + IETV+G GY L+ +
Sbjct: 181 FEDPPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRLKRS 224


>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + I++ L    F+V + TD G+ G++  K   +DA++LDL L  + G
Sbjct: 6   MRILLIEDDALIGNGIKVGLTKSGFSVDWFTD-GKTGLQAIKSAPYDAVVLDLTLPGMDG 64

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R  KI TPV IL+   ++ D+V GLQ GADDY+ KPF   E++AR++A++RR 
Sbjct: 65  MDILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRR 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++    +  + +++ V +QG  I LT +EY ++EL  + K   L++      LY
Sbjct: 125 YGQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLY 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  DE     ++V I  LR+KL     GK +I TV G GY L +N
Sbjct: 185 NWDDEVSSNALEVHIHNLRQKL-----GKQFIRTVHGVGYALGKN 224


>gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 226

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 134/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++ +L++  ++V + D G   + L   + +D  I+D+GL  + GF
Sbjct: 1   MRILIVEDDSRLLTQLDTLLQTHGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R   +S P+ IL+     ++KV GL +GADDY++KPF  EEL+AR++A++RRS 
Sbjct: 61  EVIQKARKNNVSCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S+N  ++ V V G  I LT  EY++ E L L     ++K     H+YD
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VF+ +LRKKL +  G  N IET+ GRGY
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPQGSINPIETMRGRGY 218


>gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 231

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 141/232 (60%), Gaps = 5/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +++  L   ++++ V   GE+G+       +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDIELQTNLKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R++R  +   P+ IL+   S +DKV GL +GADDY++KPF+ +ELVAR++A++RRS 
Sbjct: 61  SLIRSVRQKERDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N  +  +      I+L+G EY++ E L L +    +K +   H+YD
Sbjct: 121 GKASPLVYNGPFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----ENAKDE 228
              + +  +I+VFI +LRKKL +     N IET+ G+GY L+    E++ DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYNLIETLRGQGYRLKILAPESSADE 231


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 131/221 (59%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   ++  L+   + + +   GE+G  L     +DAI+LDLGL +I G 
Sbjct: 1   MRVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V   G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL     G++ I T+ G GY L
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYSL 216


>gi|114776380|ref|ZP_01451425.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
 gi|114553210|gb|EAU55608.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
          Length = 230

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 135/230 (58%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L H +   L  + F V     G DG  + +    D IILDLGL D+PG 
Sbjct: 1   MRLLLIEDDPELCHELASKLAQQGFAVDSAQTGVDGAYMGESEPHDIIILDLGLPDVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R   I+TPV IL+   +  +KV G ++GADDY++KPF+ EEL+ R++A++RR+ 
Sbjct: 61  DILAQWRRKNIATPVLILTARGAWHEKVEGFRAGADDYLTKPFHFEELLVRLQALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV---EVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A + IV G+L ++ ++++    + Q     I LTG E++++  + L      +    +
Sbjct: 121 GVAGANIVIGNLQLDEESQSAIWDDAQAGLRHIELTGIEFRLLRYMMLHPKRVFSATHLV 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            H+YD  DE E  +I+V++ +LRKKL+     K  I T  G+GY L  +A
Sbjct: 181 EHVYDFNDEKESNVIEVYVSRLRKKLA-----KEVICTRRGQGYYLDPDA 225


>gi|295700312|ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295439525|gb|ADG18694.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G++   L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDLS ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKREDDQ 225


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   + ++D IILD+ +  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+    I++K++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V++  K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DIGDSKPIIHTKRGLGYVLKED 223


>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 219

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 130/219 (59%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   LA  +   L  E + V     GE+G  L +   +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A IS PV IL+   +  +KV+G+ +GADDY++KPF+ EEL+AR+RA++RR++
Sbjct: 61  TVLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G + ++     V V G  I LT  EY+++  L  RK   +++     H+Y 
Sbjct: 121 GHASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LR+KL     G + I+TV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDVIKTVRGLGY 214


>gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 223

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V VT+ G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA+++   L+ E +   +   GE+G+   +   +D IILDL L  + G 
Sbjct: 15  MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGM 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  +I TPV +L+   ++ DKVRGL +GADDY++KPF   EL+AR+RA++RR  
Sbjct: 75  EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +++  GDL ++  ++ V      I+LT KEY ++E L    N  LT+     H++D
Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   I+DV+I  LR+K+ +    K  + T+ G GY LRE  K
Sbjct: 195 YDFSGMSNIVDVYIRYLRRKIDDNFEPK-LLYTIRGSGYCLREPGK 239


>gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 225

 Score =  156 bits (394), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 134/226 (59%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    E+DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLDDPAE 221


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L+  +   L+   + V +   GEDG  L     +DA++LDLGL ++ G 
Sbjct: 1   MRVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ ++RKKL     G++ I T+ G GY L +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GQDVITTIRGLGYALND 218


>gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 226

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 134/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++ +L++  ++V + D G   + L   + +D  I+D+GL  + GF
Sbjct: 1   MRILIVEDDSRLLTQLDTLLQTNGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R   ++ P+ IL+     ++KV GL +GADDY++KPF  EEL+AR++A++RRS 
Sbjct: 61  EVIQKARKNSVTCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S+N  ++ V V G  I LT  EY++ E L L     ++K     H+YD
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VF+ +LRKKL +  G  N IET+ GRGY
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPEGKINPIETMRGRGY 218


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   + ++D IILD+ +  + G+
Sbjct: 1   MKILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+    I++K++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA  +   L    + V     G D   L     +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A+++ PV IL+   S  +KV G+ +GADDY+SKPF  EEL+ARIRA++RR+ 
Sbjct: 61  SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G + +N  A TV V G  + LT  E+++++ L       ++K     H+Y 
Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ +LR+KL     G + IETV G+GY LR   +
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDIIETVRGQGYRLRPPPE 221


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   I + L+   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   ++ G  + LT  EY+M+  L   K + +++   + HLYD
Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKKL     G + IETV G GY +RE
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDLIETVRGMGYRMRE 218


>gi|330445663|ref|ZP_08309315.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328489854|dbj|GAA03812.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 224

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   +  E+G+   + Y  D  I+D+GL D  G 
Sbjct: 1   MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V VQ   + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVQESLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK +   G  N I T+ G+GY+   +A+
Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQDNPISTIRGQGYIFELSAQ 224


>gi|127513276|ref|YP_001094473.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638571|gb|ABO24214.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 131/219 (59%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPLLSHHLKVQLSELGNQVQVAQTAKEGFYQATNYPIDIAIIDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A++  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQSLRKAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L ++L AK V +    + +T  EYQ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPQITSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGLENPIATIRGQGY 217


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ ++   +  +D I+LD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAI+RR  
Sbjct: 61  EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223


>gi|91779593|ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91692253|gb|ABE35451.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 225

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G+   +L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL+ ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225


>gi|296162732|ref|ZP_06845517.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295887048|gb|EFG66881.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 296

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G+   +L +   +D I+LDL L  + G 
Sbjct: 72  MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 131

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 132 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL+ ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 252 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 296


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score =  155 bits (392), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L+  ++  L+   + V     GE+   L     +D +ILDLGL  I G 
Sbjct: 1   MRILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA+VRR+ 
Sbjct: 61  SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ L+V G + ++  A    V G  + LT  EY+++  + L ++  +++   + HLYD
Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKK+     G   IETV G GY L+
Sbjct: 181 QDFDRDSNTIEVFMGRLRKKI-----GTERIETVRGLGYRLK 217


>gi|187918761|ref|YP_001887792.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717199|gb|ACD18422.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 225

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G+   +L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL+ ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225


>gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9]
 gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9]
          Length = 219

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +E  L+   FNV     G           +DA++LDLGL  + G 
Sbjct: 1   MRVLLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKVSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV IL+   S+ED++RGL +GADDY+ KPF   E+VAR+RA++RRS 
Sbjct: 61  DVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G L ++ +A+TV   G  + LT KE+Q++EL    K+  L + +    LY 
Sbjct: 121 GRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLPRALLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +   ++V +  LRKKL     G   I TV G GY L E
Sbjct: 181 WAQELDSNALEVHVHHLRKKL-----GSQLIRTVRGVGYQLGE 218


>gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 233

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA  I   LK E F V V   GE+G+ +    +FD +ILD+ L    G+
Sbjct: 11  MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A+R   I+TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR++A++RR  
Sbjct: 71  EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V GDL ++   + V   G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D      +   I  LRKK+      K  I TV G GYV+R+
Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGF-KKKIIHTVRGIGYVVRD 232


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 135/222 (60%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  IEL L  E + V V+  G +G+EL    E+  I+LD+ L  + G E
Sbjct: 4   RVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAVK-QTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHA 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A+  ++T  DL+V+LDA+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 PAEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV++  LR KL +    + YI+TV G GYV+R
Sbjct: 183 FDTEVETNVVDVYVRYLRHKL-DETDKERYIQTVRGAGYVMR 223


>gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 221

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V +   GEDG  L     +DA ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R  K + PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL     G + I T+ G GY L
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GADIITTIRGLGYQL 216


>gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score =  155 bits (391), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +   IE  L    ++  +     +  +      +DAI+LDLGL D  G 
Sbjct: 1   MRILIVEDDRKVGQFIERGLSEVAYSGTLVRTCAEARDTLADSPYDAIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R +  + PV ILS   +++DKV+GL  GADDY++KPF+ EEL+ARIR+++RR  
Sbjct: 61  QLLRDWRSSGFNEPVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++     + ++L A+TVEV+G RI LT +E+ ++EL    +   LT+ M    ++D
Sbjct: 121 GKKTTVFEHRAIKLDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV++ +LRKKL +    K Y +T+ G GY
Sbjct: 181 SHSDLDTNLLDVYMRRLRKKLESTP-DKQYFKTLRGVGY 218


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   LK   ++V     GE+ ++      +D I+LDL +  + G 
Sbjct: 1   MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+  R AK+ TPV IL+    ++D V+GL +GADDY+ KPF+ +EL+AR+R ++RR+ 
Sbjct: 61  TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S I  G+L ++L  K+VE  G +I LTGKEY+++E L L K   LT++    H++D
Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   +IDV I  +RKKL         I+T  G GYV+++
Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA----IQTKRGLGYVVKD 219


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+K L   I   LK + ++V     G++ +E     ++DAI+LD  +  + GF
Sbjct: 1   MKILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+A R   + TPV  L+   + ED + GL  GADDY+ KPF+  EL+AR+RAI+RR  
Sbjct: 61  EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I+   + +NL  K+V   G  + LTGKEY+++ELL L +   L++E     ++D
Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE    +IDV I  +RKKL       + IET  G GYV+
Sbjct: 181 FSDEASSNVIDVLIKNIRKKLGEHG---DIIETKRGLGYVV 218


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+  LA  +EL L  E F+V+V   G +G+EL     +D I+LD+ L  + G E
Sbjct: 4   RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++T  DL V++ A+TV+     I LT +EY ++       N  LT+++ L  ++ 
Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV++  LR+KL +    + YI+TV G GYV+R
Sbjct: 183 FDTEVETNVVDVYVRYLRQKL-DEHNKERYIQTVRGAGYVMR 223


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 127/221 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ LA  I+  LKS+++ V +   G+ G+E  + +E+D I+LDL L  + G 
Sbjct: 1   MKLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  +  R     TP+ +++       KVR L +GADDY+ KPFN +EL+AR+RA++RR  
Sbjct: 61  QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+  G L +N  +  V  QG  +HLT KEY ++EL    +N   ++   + HL+ 
Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + P    +   I  LR+KL  A    N IETV+G GY L
Sbjct: 181 FDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRL 221



 Score = 48.5 bits (114), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  L       L+   F + +    +   E  +    D +ILD+ + +I G +
Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGID 568

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R        PV  LS  +S +    G Q+GADDYI KP    +LV+RI
Sbjct: 569 LCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621


>gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
 gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
          Length = 224

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   +  E+G+   + Y  D  I+D+GL D  G 
Sbjct: 1   MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK +   G  N I T+ G+GY+   NA+
Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQDNPISTIRGQGYIFELNAQ 224


>gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 224

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGVLNPVETLRGRGYRLK 221


>gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
 gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
          Length = 224

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   +  E+G+   + Y  D  I+D+GL D  G 
Sbjct: 1   MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK +   G +N I T+ G+GY+   NA+
Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELNAQ 224


>gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 226

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  G++ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPAE 221


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL  ++   L+++ + V     GE+G+ L + Y  D +I+DLGL  + G 
Sbjct: 1   MRLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    + P+ IL+   S +DKV GL++GADDY+ KPF   EL AR++A++RRS 
Sbjct: 61  TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G LS++L A+   + G  + LT  EY+++E L  ++   +TK+   ++LY 
Sbjct: 121 KTASDVLTLGPLSIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ +  +++V + +LR+KL +  G    IETV GRGY
Sbjct: 181 HGEDRDSNVLEVLVGRLRRKL-DPDGSLGPIETVRGRGY 218


>gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
 gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPDGVLNPVETLRGRGYRLK 221


>gi|149374413|ref|ZP_01892187.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
 gi|149361116|gb|EDM49566.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
          Length = 221

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ LA  +   L+   F+V  T    + + L +  E+ AIILDLGL D  G 
Sbjct: 1   MRLLLVEDDRLLADGLSRQLEKAGFSVDTTHTAREAMMLARQEEYRAIILDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R   I+ PV IL+      DKV GL++GADDY++KPF  EEL+AR+ AIVRRS 
Sbjct: 61  DVLRKWRKDHIAFPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   SL+  G   ++ + ++++      H LTG E++++  L  R     +KE  +  LY
Sbjct: 121 GRIHSLVKAGRYELDENRQSLKSDDGTEHSLTGTEFRLLRCLMSRPGQVFSKEQLMEQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  D P   +I+ +I +LRK + N     + I T  G+GY+  + A
Sbjct: 181 NLNDTPSENVIEAYIRRLRKLVGN-----DTISTRRGQGYLFNDIA 221


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+
Sbjct: 1   MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+      K  I TV G GYV R+
Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGFKRK-IIHTVRGIGYVARD 222


>gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPDGVLNPVETLRGRGYRLK 221


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L+  I   LK E ++V      E+G+    +  FD IILDL L  + GF
Sbjct: 1   MKVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLMLPKMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ +LR  KI TP+ +LS   S+EDKV+GL  GADDY++KPF+  EL+ARI+A+VRRS+
Sbjct: 61  YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S +   DL ++L  K V     +I LT KEY++++ L       +T+ M L +++
Sbjct: 121 DIDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVF 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + E  ++DV I +LR K+ +    K  I TV G GYVL+ N
Sbjct: 181 DIDFDIESNVVDVQIHRLRDKI-DKGFDKRLIHTVRGFGYVLKAN 224


>gi|332188679|ref|ZP_08390394.1| response regulator [Sphingomonas sp. S17]
 gi|332011296|gb|EGI53386.1| response regulator [Sphingomonas sp. S17]
          Length = 222

 Score =  154 bits (390), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL  +I   L++E+  V + D G D         +DA +LDLGL D  G 
Sbjct: 1   MRILLVEDDPALGPAIARALRAEHCAVDLFDTGVDAGHAGDTEIYDAAVLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R A  + PV IL+      DKV G ++GADDY++KPF  EELV R+RA+VRR+ 
Sbjct: 61  TLLREWREAGRALPVLILTARDGWSDKVAGFKAGADDYLTKPFRVEELVMRLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ  +  G LS +      E+ G  + LT  E++++  L LRK   + +   L  +Y+
Sbjct: 121 GHAQPRLTCGPLSFDSQTGQFELDGLPLKLTAFEWRVLSALMLRKEAVIPRLELLERVYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  + +   ++V + +LRKK+     G + IETV G GY L
Sbjct: 181 GDADVDSNSLEVIVGRLRKKI-----GADLIETVRGMGYRL 216


>gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305]
 gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305]
          Length = 221

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I+L L  +NF V + TD G+ G +     E+DA+ILDL L  + G
Sbjct: 1   MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTD-GKLGFDALFSAEYDAVILDLSLPRMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R     TPV IL+   ++++++ G  +GADDY+ KPF   E+V R++A++RRS
Sbjct: 60  LDILKQWRKENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S IV GDL ++   ++V + G  I LT KE++++EL +  K+  L + +    LY
Sbjct: 120 HQQVSSEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     ++V+I  LRKKL     GK++I+TV G GY L
Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL-----GKSWIKTVHGIGYKL 216


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--- 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  I+     VN     V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 119 QPQKDII----DVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 214


>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 84/215 (39%), Positives = 131/215 (60%), Gaps = 1/215 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G E+++
Sbjct: 1   MVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
           ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ G ++
Sbjct: 61  ALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSK 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
             +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y    +
Sbjct: 121 PTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQDFD 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  +++VFI +LRKKL +  G    IETV GRGY
Sbjct: 181 RDSNVLEVFIGRLRKKL-DPDGELKPIETVRGRGY 214


>gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 227

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/225 (41%), Positives = 131/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   L+     V     G  G EL     +DAI+LDL L    G 
Sbjct: 1   MRVLLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR AKISTP+ IL+     E  ++ L SGADDY+SKPF+  EL+AR++A++RR +
Sbjct: 61  EVLRGLRHAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   D+ V+   + V  +G+R+ L+  EY+++E L  R    ++K   L HLYD
Sbjct: 121 GTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    +I+V I  LR+KL N   G   IET+  RGY L E +
Sbjct: 181 FDWEHHSNVIEVHISNLRRKL-NVTNGGPVIETLRHRGYRLHEES 224


>gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 223

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|319764135|ref|YP_004128072.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330823590|ref|YP_004386893.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118696|gb|ADV01185.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329308962|gb|AEB83377.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 221

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED + L+ ++   L+ E +   +   G+  ++  K Y +DAIILDL L  + GF
Sbjct: 1   MRILIVEDSETLSEALNRSLRIEGYACDIAADGQAALQFLKSYRYDAIILDLMLPRVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+AL     + PV +LS    ++D+VR L +GADDY++KPF   EL+AR+RA+VRR  
Sbjct: 61  GVLQALGSDAGAAPVLVLSAREQLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L+V+  ++T   +G  + LT KEY  +ELL  R+   L++     HLYD
Sbjct: 121 QRDTPVLRHGELAVDPRSRTARWRGDDLKLTPKEYGCLELLLRRQGAVLSRTQIFEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   K+++V +  LR KL+    G+  I T  G GYVL
Sbjct: 181 SSSDASDKVVEVIVSTLRTKLAQCGLGE-LIVTRRGFGYVL 220


>gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 223

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|209517909|ref|ZP_03266742.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501625|gb|EEA01648.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 225

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G++   L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V GDLS ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225


>gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  154 bits (389), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNAY-EKKLIHTIRGMGYVLEDRS 223


>gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 230

 Score =  154 bits (389), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +++  L   N+ V V   GE G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  +I  P+ IL+   S +DKV GL +GADDY++KPF  EELVAR++A++RRS 
Sbjct: 61  ALITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  LI  G  S+N  +  V+     I L+G EY++ E   L      +K +   H+YD
Sbjct: 121 GKASPLIHNGPFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL +       IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNQYGLIETLRGQGYRL 220


>gi|170690683|ref|ZP_02881849.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170143932|gb|EDT12094.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 225

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +  ML+ E F +     G+    L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+ARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL+ ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225


>gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 223

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD ALA  +   L+     V V   G     L     +DA++LDLGL D  G 
Sbjct: 1   MKILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLPDGNGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L   R   I  PV IL+      DK  G  +GADDY++KPF   E++ R+RA+VRRS 
Sbjct: 61  QWLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I  GD++++  A  V   G  + LT +E++++  L       +++     H+YD
Sbjct: 121 GHAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G  EP+  +IDV + +LR+KL     G   IET+ G+GY  R N   E  
Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL-----GAQAIETIRGQGY--RMNGHGEPS 223


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/220 (41%), Positives = 132/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  + + V +   GE G+E     +FD IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRA++RR + H
Sbjct: 64  CRRVRQVQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-QPH 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              + + G + +++DA  V V G ++  T  EY ++ LL+  +N  L +E  LNH++   
Sbjct: 122 KDIIDING-IRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      +  IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PFNKEKVIETVRGVGYVIR 219


>gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 239

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G       +  EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+EDKVRGL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  ++  + V + GH + L+ +E  ++E+L  R    ++K+  + HL  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCL 218


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 137/226 (60%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ +   I   L+ E + V     G++ +   +  ++DA ILD+ +    G+
Sbjct: 1   MRILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR     TPV  L+   SI D+V GL  GADDY+ KPF+ +EL+ARIR + R+  
Sbjct: 61  EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  S+I  GDL ++  + +V V+G R I L+ +EY ++E L+L +   L++E   NH++
Sbjct: 121 THRTSVIAIGDLRIDTGSHSV-VRGARAIELSSREYAILEYLALNQGKVLSREQIENHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +        ++DV+I  LRKK+ ++  GK  I TVWG G++L+E+A
Sbjct: 180 NFDYSGGTNVVDVYISYLRKKI-DSGEGKKLIRTVWGTGWMLKEDA 224


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 129/223 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   LK   + V +   GE G +  + + +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR A   TPV +L+   +  DKV+GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++ + K V   G  +HLT KEY ++EL     +  L +   L HL+ 
Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I +LRKKL +     + IETV+G GY L++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRLKQ 223


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/227 (41%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K LA  IEL L+ E + V V   G +G++     ++D I+LDL L  + G E
Sbjct: 3   RILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TPV +++   SI D+V GL  GADDYI KPF  EEL+AR+RAI RR   
Sbjct: 63  VCRRLRQEK-ETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A +     DL +  +++ V+  G  I LT +EY ++  L   KN  +T+E  LN
Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 KVWGYETEVETNVVDVYIRYLRNKI-DTEGEDSYIQTVRGTGYVMRE 227


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  ++  +   LK E + V     G+ G+ L     +DA ++D+ L ++ G 
Sbjct: 6   MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++R LR  + + PV  LS  +S+ED+V+GLQ+G DDY++KPF   EL AR++A++RR S
Sbjct: 66  SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    + +  GD++++L ++TV V G  + L  +E+ ++E L       +TK M L H++
Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  ++DV + +LR K+      K  IET+ G GYV +
Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDP---DKTRIETLRGVGYVFK 225


>gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 239

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G       +  EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+EDKVRGL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  ++  + V + GH + L+ +E  ++E+L  R    ++K+  + HL  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIEV---GPVRIATVRGLGYCL 218


>gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 228

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 136/219 (62%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + +     G++G+ L   Y  DA I+D+GL    G 
Sbjct: 1   MRILVIEDEFKLQNQIRQQLETAGYMIDTCSDGDEGLFLASEYPLDAAIIDIGLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR      P+ IL+  SS +DKV+GL+ GADDY++KPF  EEL+AR++A++RR+ 
Sbjct: 61  EIIKTLRERGNLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELLARVKALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A++V +    I LT  EY+++E L       L+K    ++LY 
Sbjct: 121 GIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEYRLLEELVRHHGEVLSKHTLSDYLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ +  +++V I +LR+KL +  G  N IET+ GRGY
Sbjct: 181 HDEDRDSNVLEVMIGRLRRKL-DPDGTLNPIETMRGRGY 218


>gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2]
 gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2]
          Length = 242

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L  ED++ L   +   L+ E + V     G + +E     ++DA+ILD+ +  + G+
Sbjct: 19  MRLLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIMMPVMDGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV  LS   SIED+V GL SGA+DY+ KPF+  EL+ARIR ++R S+
Sbjct: 79  AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   SL+  GDL+++    TV      I L+ KEY ++E + L KN  L++E    H++D
Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   ++DV+I  LRKK+  A+  K  I TV G GYV++E
Sbjct: 199 FDYAGGTNLVDVYISYLRKKIDGASTCK-LIHTVRGSGYVIKE 240


>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K +A  ++  L+   F V +   GE+G+ + + Y +DA++LD+ L  + G 
Sbjct: 1   MKILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR  +   PV +++    IE +++GL  GADDYI KPF+  EL+AR+++++RRS+
Sbjct: 61  SILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+   DLS++ ++++V   G  I L+  EY ++E L+L     +++     H+YD
Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +IDV++  LR KL +    +  I TV G GY+L+ +A
Sbjct: 181 TDFDRDSNVIDVYVNHLRNKL-DKGFDRQLIHTVRGAGYILKGDA 224


>gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
 gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
          Length = 221

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ALA  ++  LK+ N+     D  + G+   +   +D ++LDLGL+D  G 
Sbjct: 1   MRILLLEDDQALADGLKQSLKNHNYACDQFDTIKAGMSAFEQESYDLVLLDLGLSDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R  K +TPV IL+    IEDK++GL  GADDY+ KPF+  EL+AR+RA++RRS 
Sbjct: 61  NFLQHVR-KKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I    L++NL A+T+  +   I L+ +E+ ++E L+  ++  +T+    + LY 
Sbjct: 120 GESSNNITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLYS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE E   ++V I  LRKKL  A      I+TV G GY+++++
Sbjct: 180 WDDEIESNALEVHIHNLRKKLPVA-----IIKTVRGVGYMIKKS 218


>gi|323528863|ref|YP_004231015.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385865|gb|ADX57955.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  L+H +  ML+ E F +     G+    L +   +D I+LDL L  + G 
Sbjct: 1   MKLLLIEDNPTLSHWLAKMLEQEAFALDAVQDGDSADRLLQTNHYDVILLDLNLPKLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   ELVARI+  +RR  
Sbjct: 61  NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL+ ++D +   ++G  +++T +E  ++E L LR   T+TK   ++ ++ 
Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ++++I +LRKKL    G    I T+ G GY+LR+   D+
Sbjct: 181 LADEPSEDAVEIYISRLRKKLD---GSSAAIVTLRGLGYLLRKKEDDQ 225


>gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 225

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  GD+ ++  +  V   G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
 gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
          Length = 224

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   ++ P+ IL+     +DKV GL +GADDY++KPF+ EEL AR  A++RRS 
Sbjct: 61  ELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGTLNPVETLRGRGYRLK 221


>gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  153 bits (387), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 137/227 (60%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTD 56
           MR+LL+EDD ALA ++   L+    N+Y  D+  DG EL  F    Y++DA I+D+GL  
Sbjct: 1   MRLLLVEDDAALAANLGDHLRE---NLYSVDVAADG-ELGLFQGLEYDYDAAIIDVGLPK 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G  ++  LR      P+ IL+   S EDKV GL +GADDY++KPF+  EL +R++A++
Sbjct: 57  LDGISLVTKLRAEGREFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALI 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RRS G A  +I  G +++N  +  V + G R+ L+  E+++++ L + +    +K M   
Sbjct: 117 RRSAGKASPVIENGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTE 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221
           H+YD   + +  +I+VFI +LRKKL   N  G    IET+ G+GY L
Sbjct: 177 HIYDQDFDLDSNVIEVFIRRLRKKLDPDNELG---LIETLRGQGYRL 220


>gi|160898196|ref|YP_001563778.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363780|gb|ABX35393.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 221

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD AL   I   L++E + V     GE  +      ++D  +LDLGL   PG 
Sbjct: 1   MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRA R  + +  V IL+    +++++ GL  GADDY++KPF  EELVAR+RAIVRRS 
Sbjct: 61  EVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G LS N D + + +QG R+ L+ +E  ++ELL       + K   ++ +  
Sbjct: 121 GGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    ++++I KLR+KL   AG    I T+ G GYVL
Sbjct: 181 WEANFSANAVEIYILKLRRKL---AGAGVRIVTLRGIGYVL 218


>gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72]
          Length = 228

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   A  I   L+     V V   G DG+ L     FDAI+LD  L  + G 
Sbjct: 1   MKILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRMLPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR ++I+TPV +LS +  ++D+V GL++G+DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A   Q+ + T DL ++L  ++V     RI L  KE++++E L       +T+ M L  
Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  +IDV I  LR K+ +  G    I TV G GY L  +A
Sbjct: 181 VWDYHFDPQTNVIDVHISNLRAKI-DLPGLPPLIHTVRGAGYRLGGDA 227


>gi|160898155|ref|YP_001563737.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363739|gb|ABX35352.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 221

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED + LA ++   L+SE    Y  D   DG+   KF   Y +DAIILDL L  +
Sbjct: 1   MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VLRAL     + PV +LS    ++D+VR L +GADDY++KPF   EL+AR+RA+VR
Sbjct: 58  DGFGVLRALSREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++  GDL V+  ++T   +G  + LT KEY +++LL  R+  TL++     H
Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRTARFKGIDLGLTPKEYGLLDLLLRRRGATLSRPQIFEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LYD R +   K+++V +  LR KL+   G    I T  G GY+L
Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLAQ-CGLDELIVTRRGFGYIL 220


>gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 235

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK L H +  +L      V+ TD  +  +     Y  D  I+DLGL D+ G 
Sbjct: 12  MKILLVEDDKLLNHHLSTLLTEAQNQVHSTDSAQVALHYAADYPIDVAIIDLGLPDMDGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I  P+ +L+   + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS 
Sbjct: 72  QLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
           G     +  GD  ++L  K + + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 132 GFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  +P    I+V + +LRKKL +  G    I T+  +GY+ 
Sbjct: 192 DGEGDPNT--IEVMVSRLRKKL-DPEGTIQPISTIRRQGYIF 230


>gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L  SI  +LK++ ++V     G++ ++  +  ++D II D+ +  + G 
Sbjct: 1   MKVLVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  LR  +I TPV +L+   S+EDKV GL +GADDY+ KPF  +EL+ARIR ++RR +
Sbjct: 61  GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  +L+  GD S++L  KT++ +G  + LT KEY+++E L    N  L++E    H++
Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     E  IIDV +  +RKKL N +     I+T  G GYV +
Sbjct: 181 DFDYVGESNIIDVLVKNIRKKLGNPS----IIQTKRGMGYVFK 219


>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED ++LAH+I   L+   ++  +T  G++G+       +D IILD+ L  I G 
Sbjct: 1   MRILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R+  I TPV  L+   SIED+V GL +GADDY+ KPF+ +EL+ARIRA++RR  
Sbjct: 61  NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   DL ++ ++  V   G  I LT KEY ++E L+  K   LT+     H+++
Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    I+DV+I  LR+K+ +    K  I T+ G GY+LR+
Sbjct: 181 YDFEGTSNIVDVYIRYLRRKIDDGFPEK-LIYTIRGVGYMLRD 222


>gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ L   +   LK E ++V     G++ +E     E+D IILD+ +  + G+
Sbjct: 1   MRLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV  L+   +IED+V GL SGA+DY+ KPF+  EL ARIR ++R ++
Sbjct: 61  EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  GDL ++    TV      + L+ +EY ++E + L KN  L++E   NH++ 
Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    ++DV+I  LRKK+      K  I TV G GYVL+E
Sbjct: 181 YEYEGGTNLVDVYISYLRKKVDGGFSCK-LIYTVRGSGYVLKE 222


>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+K +A ++  +L+  N+ V +   GE G++      +D IILD+ L  + G 
Sbjct: 1   MRILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIMLPKMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR  KI+TPV +LS     EDKVRGL +GADDY+ KPF  EEL+AR+RA+ RR +
Sbjct: 61  DVLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    + ++  GD+ +N +   V        LT KE Q++ELL   K   ++K   +  L
Sbjct: 120 GEIIPEGILSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E E   ++V+I  LRKKL+ A G  N I+T+ G GY+L+
Sbjct: 180 WGFDGEAEDNHVEVYISFLRKKLA-ALGSTNTIQTIRGLGYMLK 222


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 131/219 (59%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+++L   I  ++ +E +       G DG+ L   Y++D  I+DLGL  + G 
Sbjct: 1   MRLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPLMDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR    + P+ IL+   + +DKV+GL++GADDY++KPF+ EEL ARI A++RR+ 
Sbjct: 61  TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G ++++  AK V   G  + LTG EY  +  L++     ++K     HLY 
Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VF+ +LRKKL +  G  N I T  G GY
Sbjct: 181 QDYDRDSNVIEVFVGRLRKKL-DPDGSLNLISTQRGLGY 218


>gi|119774679|ref|YP_927419.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119767179|gb|ABL99749.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  153 bits (386), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 129/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V +  ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPLLSHHLKVQLSELGNQVQVANTAQEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR A++  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  ELITRLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPRITSGSLELDLAAKQVTLDSEVLEITAFEYLILEYLMRHSHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGMDNPIVTIRGQGY 217


>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 224

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L  SI  +LK++ ++V     G++ ++  +  ++D II D+ +  + G 
Sbjct: 1   MKVLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  LR  +I TPV +L+   S+EDKV GL +GADDY+ KPF  +EL+ARIR ++RR +
Sbjct: 61  GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  +L+  GD S++L  KT++ +G  + LT KEY+++E L    N  L++E    H++
Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     E  IIDV +  +RKKL N +     I+T  G GYV +
Sbjct: 181 DFDYVGESNIIDVLVKNIRKKLGNPS----IIQTKRGMGYVFK 219


>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  152 bits (385), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 128/228 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  LAH++   L+ + + V     GE G EL    E+D IILDL L  + G 
Sbjct: 1   MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR       + IL+     E++V GL +GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q L+   DL ++   +TV +   R++LT KE+ ++  L   +   +T+EM L H++D
Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G   P    + V I  LR+KL +      YIETV G GY L    + E
Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGESE 228


>gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK L H +  +L      V+ TD  +  +     Y  D  I+DLGL D+ G 
Sbjct: 1   MKILLVEDDKLLNHHLATLLTEAQNQVHSTDNAQVALHYATDYPIDVAIIDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I  P+ +L+   + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS 
Sbjct: 61  QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
           G     +  GD  ++L  K + + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 121 GFISPRVKAGDYELDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  +P    I+V + +LRKKL +  G    I T+  +GY+ 
Sbjct: 181 DGEGDPNT--IEVMVSRLRKKL-DPEGNIQPISTIRRQGYIF 219


>gi|293376013|ref|ZP_06622270.1| putative transcriptional regulatory protein CutR [Turicibacter
           sanguinis PC909]
 gi|325841065|ref|ZP_08167248.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
 gi|292645369|gb|EFF63422.1| putative transcriptional regulatory protein CutR [Turicibacter
           sanguinis PC909]
 gi|325490082|gb|EGC92426.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
          Length = 224

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 131/221 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+K +  +++  L+ E + V VT  GE+ +EL  F  ++ ++LD+ L  I GF
Sbjct: 1   MRLLIIEDEKDILLALQKGLQKEGYAVDVTGDGEEALELLNFNTYNLVVLDINLPSIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   ++T V I+S    IEDK+RGL  GA+DY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SILEILREKDMTTRVIIVSANREIEDKIRGLDLGANDYLVKPFDFSELKARIRALLRREF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+L ++L    V      ++LT KEY +++ L   K   ++ E  + H++D
Sbjct: 121 TSVPTIIKEGELCLDLATHKVTFNDQILNLTLKEYSILKYLIQNKGRIVSSEELIQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +I V I  LRKKL   +G  N I+T+ G GY+ 
Sbjct: 181 ENADPFTTVIRVHIYSLRKKLITISGKDNIIQTIKGVGYLF 221


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K LA  IEL L  EN+ V + + G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQQQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  I    + ++ +A  V V G ++ LT  EY +  +L+  KN  L +E  LNH++   
Sbjct: 121 KKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL    G    IETV G GYV+R
Sbjct: 181 TEVETNVVDVYIRYLRNKLK-PFGKDKVIETVRGVGYVIR 219


>gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii]
          Length = 224

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ LAH ++  L   N+ V +   G DG        +D ++LD+ L  I GF
Sbjct: 1   MRILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K  TPV +L+    +ED+VRGL++GADDY+ KPF   EL+ARI+A++RR R
Sbjct: 61  WILKDLRETK-DTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  GDL ++L  +     G R+ LT KE+ ++ LL  R+   L++ M    ++D
Sbjct: 120 GQESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+V + +LR K+ +    +  + TV G GYVL E  +
Sbjct: 180 MNFDSDTNAIEVAVRRLRAKIDDPF-DRRLLHTVRGMGYVLEERGE 224


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  152 bits (385), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+
Sbjct: 3   VRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 63  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+      K  I TV G GYV R+
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGFKRK-IIHTVRGIGYVARD 224


>gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 223

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + I++ L    F V + TD G+ G+E  +   +DA++LDL L  + G
Sbjct: 1   MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTD-GKTGLEAAQSAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+A R      PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LDVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GHA  +I    +  + + + V +    I LT +EY+++EL  L K   LT++   + LY
Sbjct: 120 YGHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +  +E     ++V I  LR+KL     GK +I TV G GY L +N  DET
Sbjct: 180 NWDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN--DET 222


>gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 224

 Score =  152 bits (384), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNEGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIKVGPLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+      K  I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  L   +   LK E ++V +   G DG+E  K   +D IILD+ L +I G 
Sbjct: 1   MRILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR   I+TP+ +L+   +++DKV+GL +GADDY++KPF   EL ARIRA++RR +
Sbjct: 61  QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL VN     V   G  I LT KEY ++E +       LT+   ++H++ 
Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV+I  LRKK+ +    K  I+T+ G GY L+E
Sbjct: 181 YEFDGLSNIIDVYIRYLRKKIDDNFDIK-LIQTIRGSGYCLKE 222


>gi|222087598|ref|YP_002546135.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725046|gb|ACM28202.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 218

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S++  L+   + V     GE G+E  +  +F AI+LD+ L  + G 
Sbjct: 1   MRVLLVEDDNILGSSLKKALEKHAYGVDWMRDGESGLEAAQHSDFAAIVLDINLPRLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R    S PV +L+ + ++  KV GL  GADDY+ KPF+ +EL+AR+RA++RR  
Sbjct: 61  EVLRGIRQRGNSVPVLLLTALDAVRQKVEGLDEGADDYLVKPFDLDELLARMRALIRRRD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S+I  GD+ V+  A        ++H T KE+ +++LL  R    +TK      LYD
Sbjct: 121 GRTESVIRCGDIEVDPSAMVARKGDVQVHTTAKEFHLLKLLMERSGRYVTKNDIEYALYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   I+V I  LRKKL     G ++I+++ G GY++
Sbjct: 181 AESTVESNTIEVTIYNLRKKL-----GSDFIKSIRGVGYMI 216


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 127/225 (56%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       YV D   DGI+   L     +DA+ILDLGL  +
Sbjct: 1   MRILLIEDEATLARQLADTLSQAG---YVVDHASDGIDAEHLGTENPYDAVILDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+  R A    PV IL+   S  +KV G+ +GADDY++KPF  EEL+ARIRA++R
Sbjct: 58  DGLTVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS GH   ++V G +++      V V G  I LT  EY++++ L   +   ++K     H
Sbjct: 118 RSTGHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +Y    + +   I+VF+ +LR+KL     G + IETV G GY LR
Sbjct: 178 IYAQDHDRDSNTIEVFVGRLRRKL-----GVDVIETVRGLGYRLR 217


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+NV + + G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIR-QEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   ++D+ L  + G 
Sbjct: 1   MRILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K++TP+ ILS   S+ED+VRGL++G+DDYISKPF+  EL+AR++A++RRS 
Sbjct: 61  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +T G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+ +    +  + T+ G GYVL+E
Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKI-DRDWDRKMLHTLRGVGYVLKE 223


>gi|163752506|ref|ZP_02159693.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
 gi|161327598|gb|EDP98795.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99]
          Length = 224

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 130/219 (59%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLQVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR A +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIENLRDAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +GDL ++L AK + ++G  + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVRPKITSGDLELDLAAKQLSMKGVPMDITAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-EGLENPIATIRGQGY 217


>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ L   +   L+   + V     GE+G  L +   +D IILD+GL    G 
Sbjct: 1   MRLLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A++ TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  + LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL+      + I+TV G GY++   A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPGA 220


>gi|89901889|ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89346626|gb|ABD70829.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 239

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+ E + V   D G D     K  +++ IILDL L  + G 
Sbjct: 16  MRILVVEDNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGK 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR     TPV IL+  ++I+ +V  L  GADDY++KPF  EEL ARIR ++RRS 
Sbjct: 76  EVLRRLRARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSS 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  LI  GDLS N + +   +    + LT +E  ++E+L  +  TT+TK      L+ 
Sbjct: 136 GQASPLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFS 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++     I++++ +LRKKL +++     I T+ G GY+LR
Sbjct: 196 LSEDASTDAIEIYVHRLRKKLEHSSA---QIMTLRGLGYLLR 234


>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 223

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 132/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   I+D+ L  + G 
Sbjct: 1   MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  KI TP+ ILS   S+ED+VRGL++G DDY+SKPF+  EL+AR++A++RRS 
Sbjct: 61  QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +T G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+      K  + T+ G GYVL+E
Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRK-MLHTLRGVGYVLKE 223


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED   L  ++  ML+ E + V     GE G+     +E+D I+LD  L  + GF
Sbjct: 1   MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  K STPV +L+    + D+V+GL  GADDY+ KPF++ EL+AR+RA++RR+ 
Sbjct: 61  DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++SL+  G  +++NL  + V      I LT +EY + E L+L +   + +    +H++
Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D  DE    ++DV I  LR+KL     G++ IET  G GY++   A 
Sbjct: 180 DENDESLSNLLDVHISNLRRKL-----GRDVIETRRGLGYIIHSQAS 221


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ AL   +   L    + V     G +G+ + + Y  D  I+DLGL    G 
Sbjct: 1   MRLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR    + PV +L+     +D+V GL++GADDY+ KPF   EL+AR++A++RR+ 
Sbjct: 61  ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++    L+++  ++T    G RI LTG E++++  + L +   L+K     HLY 
Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  +++VFI +LR+KL +  G    IET+ GRGY LR
Sbjct: 181 DAAEHDSNVMEVFIRRLRRKL-DPDGTLQPIETLRGRGYRLR 221


>gi|330824369|ref|YP_004387672.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329309741|gb|AEB84156.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 227

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED   +A S++  L++E F+V V   GEDG  L     FD +ILDL L    G 
Sbjct: 1   MRILIIEDQSKVAQSVKHGLEAERFDVTVAATGEDGFFLVSSQVFDLLILDLMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR   ++TPV ILS   ++ D++RGL  GADDY+ KPF  EEL+ARIRA++RR R
Sbjct: 61  EILRTLRSRGLATPVIILSARDTVGDRIRGLDLGADDYLVKPFAFEELLARIRALLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL V+   + V   G  + LT  EY++++ L L +   +++EM    ++ 
Sbjct: 121 AQDVLRLKVADLEVDRVTRRVARGGQDVELTAHEYELLDYLLLHQGRVVSREMLARDVWR 180

Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              R  P   +IDV I +LR+K+ N   G   I TV G G+VL+E A
Sbjct: 181 EVARATPLDNVIDVHIARLRRKIDNGH-GHPLIHTVRGVGFVLQEQA 226


>gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
          Length = 224

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 133/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+  +S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+      K  I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221


>gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 227

 Score =  151 bits (382), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ L   +   L+   + V     GE+G  L +   +D IILD+GL    G 
Sbjct: 1   MRLLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGLPKQDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A++ TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  + LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKKL+      + I+TV G GY++
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLI 216


>gi|302876257|ref|YP_003844890.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307686989|ref|ZP_07629435.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579114|gb|ADL53126.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 134/222 (60%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDDK L  SI   + SE+F       GE+G+ + +   +D IILD+ L  I G+
Sbjct: 1   MKALIIEDDKFLLESICQSI-SEDFEYEYAMDGEEGLYMAEQNIYDVIILDIMLPSIDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR A + TPV IL+   SI+DK++G + GADDY+ KPF++EEL+ R+ AI+RR+ 
Sbjct: 60  GILGKLREASVFTPVLILTAKDSIDDKIKGFKLGADDYLVKPFHREELLLRLEAIIRRNG 119

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H +  ++T  DLS+N   KTV +    I L GK++ ++E L   +   LTKE   + ++
Sbjct: 120 NHLKDHVLTFKDLSLNTKNKTVFINDSEIFLQGKQFDILEYLLNNQGAILTKEQIFDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  V +++V+   LRK L  A G   YI+TV G GY+L
Sbjct: 180 GFNSDTTVSVVEVYASNLRKSLK-AHGYDKYIKTVRGLGYML 220


>gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 242

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
 gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
          Length = 229

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L+H ++  L      V      E+G+   + Y  D  ++D+GL D  G 
Sbjct: 6   MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  PV IL+  ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 66  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 126 GFVKPEMSAGDIRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK   +AG  N I T+ G+GY+    A+
Sbjct: 186 DQ-EGDPNTIEVMISRLRKKFM-SAGQDNPISTIRGQGYIFELQAQ 229


>gi|170748483|ref|YP_001754743.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655005|gb|ACB24060.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 221

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD ALA  +  +L++ENF +     GED   L +   +DA++LDLGL    G 
Sbjct: 1   MKILLVEDDAALAAEVAKVLRAENFVLDHAATGEDAQHLGETEGYDAVVLDLGLPKGDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R A  + PV +L+      DKV   ++GADDY+ KP   EELV R+RA+VRRS+
Sbjct: 61  SVLRAWRAAGRTLPVLVLTARDGWSDKVAAFKAGADDYLVKPVRVEELVIRLRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S I  G LS +      E +G  + LTG E++++  L L + T + +   +  +Y+
Sbjct: 121 GGGASRITCGPLSFDPGLGAFEHEGLPLKLTGLEWRVLSCLMLNRETVVPRPHLIERVYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  + +   ++V I +LR+K++ A      IE+V G GY L
Sbjct: 181 GDADVDSNSVEVIITRLRRKIAPA-----RIESVRGHGYRL 216


>gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 242

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 225

 Score =  151 bits (382), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQTGYAVDLSTDGEDGHFLGSTEDYDACILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  G + ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGGVRLDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/220 (40%), Positives = 131/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  +N++V +   G+ G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRA++RR    
Sbjct: 64  CRRVRQEQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + +++DA  V + G ++  T  EY ++ LL+  +N  L +E  L+H++   
Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL    G    IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PYGKDKTIETVRGVGYVIR 219


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 132/226 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L+  I   LK   + V     G++ +EL +  E+D IILDL L  + G 
Sbjct: 1   MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +RV      + ILS  S+I DK+ GL  GA+DY+ KPF+ +EL ARIR ++RRS 
Sbjct: 61  EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   +++++   K V V G  IH+T KEY ++E L L +N  ++ E  + H++D
Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     +   I  LRKK+++  G    I+T+ G+GY++ EN +
Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITENDR 226


>gi|167032955|ref|YP_001668186.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859443|gb|ABY97850.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 222

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 222

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPYDLIVLDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR++
Sbjct: 61  EVLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V  +G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GYV
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYV 216


>gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 246

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 7   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 67  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIKNKNNVVTRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 243


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+LI    +S+N   + V  QG  + LT KEYQ++  L       +T++  +  LY 
Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK S      + I T+ G GY++ E
Sbjct: 181 WSEEAESNTLEVHIHHLRKKFST-----DLIRTIRGVGYLVEE 218


>gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 225

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL  GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S I  G L ++L  K   V    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G D+ +  +I+V + +LR+KL    GGK+ IETV G+GY+  E  K
Sbjct: 181 GDDDRDPNVIEVLVGRLRRKLEAVLGGKS-IETVRGQGYMFNERCK 225


>gi|296116750|ref|ZP_06835357.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976672|gb|EFG83443.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 233

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 136/220 (61%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +A  +   L+S  F V     G  G+E+   ++FD +I+D  L ++ G  +
Sbjct: 12  VLLVEDDVKIAQEVVEELESRRFRVRHEVSGSLGLEVGLAHDFDVMIVDRMLPELDGLSL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR  ++  PV +LS +S+++D+V GL++G DDY++KPF  EEL AR+ A++RR    
Sbjct: 72  IETLRERRVRAPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPNNS 131

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++++  G L+++L  +TV   G  I L  +E++++E L  R +  LT+ M L  +++ R
Sbjct: 132 RETMLHAGPLAMDLIERTVTRNGELIELLPREFRLLEYLMRRPDQVLTRNMLLEDVWNYR 191

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P+  ++DV I KLR+K+ +  G  + I+++ G G++LR
Sbjct: 192 FIPQTNLVDVHIGKLRRKV-DEPGAPSLIQSIRGAGFMLR 230


>gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
 gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
          Length = 224

 Score =  151 bits (381), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+      K  I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221


>gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
 gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
          Length = 224

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+      K  I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTDENVK-LIQTVRGVGYVLK 221


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 134/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   ++D+ L  + G 
Sbjct: 29  MRILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLPGMDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K++TP+ ILS   S+ED+VRGL++G+DDYISKPF+  EL+AR++A++RRS 
Sbjct: 89  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + +  G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+      +  + T+ G GYVL+E
Sbjct: 209 DYHFDPQTNLVDVLVCRLRNKIDRDY-DRKMLHTLRGVGYVLKE 251


>gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202]
 gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202]
          Length = 221

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I+L L  +NF V + TD G+ G +     E+DA+ILDL L  + G
Sbjct: 1   MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTD-GKLGFDALFSAEYDAVILDLSLPRMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R      PV IL+   ++++++ G  +GADDY+ KPF   E+V R++A++RRS
Sbjct: 60  LDILKQWRKENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S IV GDL ++   + V + G  I LT KE++++EL +  K+  L + +    LY
Sbjct: 120 HQQVSSEIVIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     ++V+I  LRKKL     GK++++TV G GY L
Sbjct: 180 SWDNEVSSNALEVYIHNLRKKL-----GKSWVKTVHGVGYKL 216


>gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
          Length = 246

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 7   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 67  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 243


>gi|225848555|ref|YP_002728718.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644100|gb|ACN99150.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 222

 Score =  151 bits (381), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 135/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K L   I+  L+ E+F V +   G++ ++      +DAIILDL L DI G 
Sbjct: 1   MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R + I TPV +L+    ++DK+  L +GADDYI+KPF+ +EL+ARIRA+VRR +
Sbjct: 61  DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I  GDL ++L   TV+  G+ I L+ KEY ++      +   LTK+  +N +YD
Sbjct: 121 DIKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     ++V I +LR K+ +      YI+++ G GY+  E
Sbjct: 181 LSFELNSNALEVLISRLRSKIEDE--NHKYIKSIRGLGYIFDE 221


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 136/225 (60%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K +A  +EL L+ E + V     G +G+ L     FD ++LD+ L  I G E
Sbjct: 4   KILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSINGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R      P+ +L+   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR   
Sbjct: 64  ICRRIRTQS-QVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +++SL +  D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  +
Sbjct: 123 EQTNSESLCLR-DIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E  ++DV+I  LR KL  A    +YIETV G GYV+RE
Sbjct: 182 WGYDTDIETNVVDVYIRHLRTKLPGAMN--DYIETVRGVGYVMRE 224


>gi|329767893|ref|ZP_08259407.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341]
 gi|328838681|gb|EGF88280.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341]
          Length = 225

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LA ++E MLK  N++V V + G+D ++     ++D  ILD+ +  + G 
Sbjct: 1   MRLLLAEDERDLADALEAMLKHNNYSVDVVNNGQDALDYLMLDDYDGAILDVMMPQMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  K STPV +L+  S IEDKV GL SGADDY++KPF  +EL+AR+R++ RR  
Sbjct: 61  TVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTKELLARVRSMTRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G++S++     +  +  ++ L+ KEYQM+E+L       +  E FL  ++ 
Sbjct: 121 TFTSNVLELGNVSLSKYTFELATEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E+ ++ V I  LRKKL  A     +I+     GY L
Sbjct: 181 YDSESEINVVWVNISYLRKKLK-ALDANIHIKATRNVGYTL 220


>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
           [Psychromonas ingrahamii 37]
          Length = 230

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L  +++  L + ++ V     GE+G+     Y +DA I+DLGL  I G 
Sbjct: 1   MRILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    + P+ IL+   S +DKV GL +GADDY+ KPF  EELVAR+ A++RRS 
Sbjct: 61  TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V+ +   I L+  EY++ E   L      +K +   H+YD
Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL +       IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDNEYGLIETLRGQGYRL 220


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  +EL LK E F   V   G  G+EL +  +FD I+LD+ L  + G E
Sbjct: 4   KILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++    + D+V GL +GADDY+ KPF  EEL+ARIR+I+RR + 
Sbjct: 64  VCRRIRKTS-NVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S  ++  +L +++DA  V  + ++I LT KE+ +++LL   +N   T+E  L  ++ 
Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV+I  LR KL        YIETV G GYV+R
Sbjct: 183 FDTEVETNVVDVYIRHLRTKLQTEHTP--YIETVRGVGYVMR 222


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL LK E++NV +   G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +++I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
 gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
          Length = 242

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V+GH + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL       + I+TV G GY+L     D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPPAD 222


>gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii DPC 6026]
          Length = 242

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A   TPV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L   K   +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E +   V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K STP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREVK-STPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIHL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DL++  + + V      I+LT +EY+++  L    N  L +++ L
Sbjct: 122 EGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV++  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 TKVWGYESEVETNVVDVYVRYLRNKI-DVPGQKSYIQTVRGTGYVMR 227


>gi|114563656|ref|YP_751169.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334949|gb|ABI72331.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L+H +++ L ++   V V    ++G      Y  DA I+DLGL D  G 
Sbjct: 1   MRILVIEDDPLLSHHLQVQLSAQGNQVQVALTAKEGFYQATNYPIDAAIIDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A +  P+ IL+   + +DKV GL +GADDY+ KPF KEEL+AR+ AIVRRS 
Sbjct: 61  SLIKMLRNADVKAPILILTARLTWQDKVEGLNAGADDYLVKPFQKEELIARLDAIVRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L +++ AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVRPTITSGALQIDVAAKQVTLNQTPLEITAFEYLILEYLMRHCHEVVAKQRLLDVVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E +   I+V + +LRKKL+   G +  I T+ G+GY
Sbjct: 181 DK-EGDPNTIEVMVSRLRKKLAQ-GGIEQSIITLRGQGY 217


>gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   +   L+   + V     GE+G  L     +DA++LDLGL  + G 
Sbjct: 1   MRLLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGLPTLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 61  SVLEKWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++L A  V V G  I LT  EY+++  L   +   +++     HLYD
Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   ++VF+ +LRKK+     G   IET+ G GY L E A+DE
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKI-----GAEMIETIRGLGYRLGE-ARDE 222


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL     G + I+TV G GY+L   A D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKL-----GVDIIQTVRGLGYLLSPPAAD 222


>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 137/232 (59%), Gaps = 13/232 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDDK +A  +   LK   + V  TD G+ G+ +     +D +++D  L ++ G 
Sbjct: 1   MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV +LS +  ++D+V+GL++G DDY+ KPF+  EL+ARI A++RRS+
Sbjct: 61  SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              Q ++ T    DL ++L A+TV+  G  I L  +E++++E         LT+ M L  
Sbjct: 121 -QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225
           ++D   +P+  +IDV I +LR K+      K++    + T+ G GYVLRE A
Sbjct: 180 VWDYHFDPQTNVIDVHISRLRAKID-----KDFETPLLHTIRGAGYVLREAA 226


>gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL  GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S I  G L ++L+ K   V    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DE +  +I+V + +LR+KL    GGK  IETV G+GY+  E  K
Sbjct: 181 GDDERDPNVIEVLVGRLRRKLEAMLGGK-LIETVRGQGYMFNERCK 225


>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 225

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G ++ LT  EY+++  L       +++     HLYD
Sbjct: 121 GHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+      + I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLVDPN 219


>gi|170727148|ref|YP_001761174.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169812495|gb|ACA87079.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 224

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 131/219 (59%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR   +  PV IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G L+++L AK V +    + +T  EYQ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPVITSGPLNLDLAAKQVTMHEEVMEVTAFEYQILEYLMRHCHEVVAKQRLLDVVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E +   I+V + +LRKKL+ + G  N I T+ G+GY
Sbjct: 181 DK-EGDPNTIEVMVSRLRKKLT-SGGLDNPIATIRGQGY 217


>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 223

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +A  I+  L+ E+F V V   GE+G+ L +   +D I++DL L    G 
Sbjct: 1   MRVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   ++TPV  L+   ++ED V GL SG+DDY++KPF   EL+AR++A++RRS 
Sbjct: 61  EVIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++  +  V      I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 KDRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+ +    K  I TV G GYVL+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKV-DRDFDKKLIHTVRGVGYVLKE 222


>gi|311693076|gb|ADP95949.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 221

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ LA  +   L+   F+V  T   ++   L +  ++ A+ILDLGL D  G 
Sbjct: 1   MRLLLVEDDRLLADGLSGQLEKAGFSVDTTYTAKEAAILGEQEDYRAVILDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R  +I  PV IL+      DKV GL++GADDY++KPF  EEL+AR+ AIVRRS 
Sbjct: 61  DVLRKWRTHQIGCPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S++  G   ++ + ++++ +    H LTG E++++  L  R     +KE  +  LY
Sbjct: 121 GRIHSMVKAGRFELDENRQSLKSEDGTEHSLTGTEFRLLRCLMSRPGHVFSKEQLMEQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  D P   +I+ +I +LRK + N     + I T  G+GY+  +
Sbjct: 181 NLNDTPNENVIEAYIRRLRKLVGN-----DTIATRRGQGYLFND 219


>gi|168702458|ref|ZP_02734735.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED + LA ++   ++ E F V V   GE+    C+   +D ++LD+ L  + G  +
Sbjct: 1   MLLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSL 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAIVRRSRG 121
           L+  R + ++T V +L+  S   DKV GL +GADDY+SK   + EEL ARIRA++RR   
Sbjct: 61  LKRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQ 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL ++  A+TV   G  IHLT +EY ++E L+  +   +T+ M   HLYD 
Sbjct: 121 QKDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDE 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            DE    ++DV+I  LR K+ +       I T WG GY+LR
Sbjct: 181 YDENTSNVVDVYIRYLRNKV-DKEFDPQLILTRWGEGYMLR 220


>gi|190894846|ref|YP_001985139.1| putative two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|190700507|gb|ACE94589.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
 gi|327189023|gb|EGE56209.1| putative two-component response regulator protein [Rhizobium etli
           CNPAF512]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 131/222 (59%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   + K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  GDL  +   +   V G  + LT +EY ++E L ++  TT++K      ++ 
Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I+++I +LRKKL N++     I T+ G GY+LR
Sbjct: 181 FDDEADPSAIEIYIHRLRKKLENSS---VQIATLRGLGYLLR 219


>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
 gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Antiqua]
 gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Nepal516]
 gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Pestoides F]
 gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
 gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
 gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
 gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
           regulatory system [Yersinia pestis KIM 10]
 gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
           pseudotuberculosis (type O:1b)]
 gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           Angola]
 gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 220

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L SE +         +   L +  ++  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLSSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/200 (41%), Positives = 125/200 (62%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L + +   LK   ++V     GE+ ++  ++ E+D +ILD+ +  + GF
Sbjct: 1   MKILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR     T V +L+   S +DKV+GL  GADDYI KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + +V GDL ++   K+V   G +I LTGKEY+++E L   KN  L+++    H++D
Sbjct: 121 GNSSNKLVIGDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKK 200
              E +  IIDV I  +RKK
Sbjct: 181 FDYEGDSNIIDVLIKNIRKK 200


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K ++  I+  L+ E + V     GEDG+++     FD IILD+ L    G 
Sbjct: 1   MKILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA+VRRS 
Sbjct: 61  SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222


>gi|325276878|ref|ZP_08142571.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097983|gb|EGB96136.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 222

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  EVLAQWRAAALATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDEGRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+   +A+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIYAGSAE 222


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD  +A  IEL L+ E + V   D G DGI + K   FD ++LD+ L  + G E
Sbjct: 4   KILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S +EDKV+GL  GADDY++KPF  EEL+ARIRA +RR  G
Sbjct: 64  VCSQIREFS-DIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++++ T D+ V LDA  V+  G  I LT KEY ++  L   +   ++++  LN+++
Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E  I+DV+I  LR K+ +    K  I TV G GYVLR +
Sbjct: 183 GYDYTGETNIVDVYIRYLRSKIDDPFSQK-IIHTVRGVGYVLRSD 226


>gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 124/231 (53%), Gaps = 15/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----------FDAIIL 50
           MR+LL+EDD  +  S++L L+ E F V     GE G+                 +D I+L
Sbjct: 1   MRVLLVEDDAMIGDSVKLALRQEGFAVDWVQDGEAGLAAGTPTGGSGGADEGACYDLILL 60

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G +VLRALR   +STPV IL+   +I D+V GL +GADDY+ KPF+ +EL A
Sbjct: 61  DLGLPRRSGLDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A+ RR+ G A+ ++  G +S+N   + V + G  +HL+ +E+ ++  L  R     +
Sbjct: 121 RMHALARRAEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  LY   DE     ++V+I  LRKK      G   I  + G GYV+
Sbjct: 181 VAQLQERLYSWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVM 226


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V+V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638]
 gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 220

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + +V GDL++NL  + V    H + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216


>gi|188996301|ref|YP_001930552.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931368|gb|ACD65998.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 220

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 135/222 (60%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L   I+  L+ E F V +   G    E      ++ I+LDL L +  G 
Sbjct: 1   MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR   I TPV IL+   S+EDK++GL +GADDY++KPF+ +ELVARI+A++RR  
Sbjct: 61  SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++  GD+ V+L  + V+V+G  + LT  E +++ +L+L+ N  L+K      LY 
Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P+  +I+V I +LRKKL        YI+TV G GY+L+
Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPKG---KYIKTVKGLGYILK 219


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V ++G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKEA 220


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 126/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  + H +   L  E++ V     GE+ +      E+D ++LD+ L  + G 
Sbjct: 1   MQILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V +ALR    S P+ +L+    + DKV GL +GADDY++KPF+ +EL ARIRA+ RR +
Sbjct: 61  AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  GDLS++   KTV+     I LT +EY ++E      N  LTK   L H++D
Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    I++ ++  LRKK+  A      I T+ G GY+LRE
Sbjct: 181 YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYILRE 223


>gi|53804200|ref|YP_114203.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757961|gb|AAU92252.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 224

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ LA  +   L  + F++ V   G       +  ++D +ILDLGL DI G 
Sbjct: 1   MRILLVEDDETLADGLSRSLAEDGFDLTVAATGTYADSALRTQDYDLVILDLGLPDIDGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K   PV IL+    ++D++ GL+ GADDY++KPF   EL AR+RA++RRS 
Sbjct: 61  EVLRQLRVRKSPVPVLILTARDGLDDRIGGLELGADDYMTKPFELRELEARVRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     IV G L +N   + V V G  + L  +EY ++E L L+    ++K+     L  
Sbjct: 121 GGFGHDIVCGPLVLNTFDRQVHVNGEPMLLPSREYGVLEALLLQAGRVVSKDRIALRLAS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DE     I+V++ +LR++L +       I TV G GY+L   A
Sbjct: 181 GGDELADNAIEVYVHRLRRRLDDLG---IRIRTVRGLGYLLERPA 222


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  +E+ L+ E + V     G  G+E     ++D ++LD+ L  + G E
Sbjct: 4   KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   PV +L+   S+ DKV GL SGADDYI+KPF  EEL+ARIRA +R+   
Sbjct: 64  VLRRLR-RESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H  S++  G+L+++++   V V+G  + LT KE+ ++  L   K   LT+E  L+ ++  
Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E   +DV+I  LR K+  A G K  I TV G GYV+RE+
Sbjct: 183 DFVGETNSVDVYIRFLRSKIDEAFGIK-LIHTVRGVGYVIRES 224


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ +A  +   L   ++ V V   GE   EL   YE+D I+LD+ L  I G 
Sbjct: 1   MKILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RR  
Sbjct: 61  SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+LS+N +   V  Q   + L+ KEY+++E      +    +   L+HL+ 
Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               PE   +   I  LR+K+    G  + IETV+G GY L+E  
Sbjct: 181 LEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRLKEQP 225


>gi|170720972|ref|YP_001748660.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758975|gb|ACA72291.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 222

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR++
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V  +G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 216

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 133/221 (60%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  ++   L  E + V   D G +G+   + +++DAI+LD+ L ++ G+
Sbjct: 1   MRLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K  TPV +L+   + +D+VRGL  GADDY++KPF+  EL AR+RA++RRS 
Sbjct: 61  TLLQRLRRTK-RTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRSC 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GDL ++  A+TV  +G  + LT  EY +IE L+L +   +++     HL+D
Sbjct: 120 GEVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLYEHLFD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV +  +R+K+     G++ I T  G GY++
Sbjct: 180 EAHDSLSNLLDVHVAHVRRKI-----GRDVIVTRRGHGYLI 215


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 127/225 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   IE  L  +N+ V V   GE   +    +++D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+   +I+D+V+GL +GADDY+ KPF+ EEL ARIRA++RR  
Sbjct: 61  ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL V+ +   V  Q   ++L+ KEY+++E          ++   L+HL+ 
Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               PE   +   I  LR+KL  A    + IETV+G GY L+E+ 
Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKESP 225


>gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii]
 gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii]
          Length = 223

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +   I+  L+ E++ V + + G  G+++     +D I++DL L  +PG 
Sbjct: 1   MRVLVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPSLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI TPV IL+  S ++ +V+GL +GADDY++KPF  +EL+AR+RA++RR  
Sbjct: 61  EVLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +   DL +N   + V   G RI LT KEY ++E         LT+ M  +H+++
Sbjct: 121 AESSGTLQIDDLLLNPATREVTRGGQRIDLTVKEYALLEYFMRHAGRVLTRPMISDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +IDV++  LR K+      K  I T+ G GY+L+
Sbjct: 181 QDFDTFTNVIDVYVNYLRNKIDRGRARK-LIHTIRGSGYMLK 221


>gi|262375479|ref|ZP_06068712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309733|gb|EEY90863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 221

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 133/219 (60%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + +   + G+  I   + +++D I+LD GL +  G 
Sbjct: 1   MRILLAEDDQSQADSIQTWLEMDGYVIDRVERGDHAILAIEQHQYDCILLDRGLPNATGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L++LR  +  TPV  ++   SI+D+V GL  GA+DY+ KPF+ EEL AR+RA +R+ +
Sbjct: 61  EILKSLRSQQQDTPVIFITAKDSIDDRVEGLDLGANDYLVKPFSLEELSARVRAQLRQKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +++  DLS++  AKT+  +G  ++LT KE+Q++  L  +    +T+E     LY 
Sbjct: 121 QTPNHILLWQDLSLDTQAKTLTKEGQAVNLTAKEFQILYKLMQQPEHIVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE E   I+VFI +LRKK+     G   I+T+ G GY
Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GSQMIKTIRGLGY 214


>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
 gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
          Length = 223

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G  G+E      +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R  K   PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I    +  + + + V +Q   + LT +EY+++EL  L K+  L + +    LY 
Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     ++V I  LR+KL     GK++I TV G GY L +N
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKHFIRTVHGVGYTLGKN 219


>gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  LA  I   L+   + V  +  GEDG  +     +DA ILDLGL  + G 
Sbjct: 1   MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R AK + PV IL+  +S  +KV GL+ GADDY++KPF  EEL+ARI A++RR+ 
Sbjct: 61  SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I    L ++   + +   G  + LT  EY+ +  L +     ++K     H+Y 
Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ +  +I+V + +LRKK+     G + I T  G+GY L
Sbjct: 181 QDDDRDSNVIEVLVNRLRKKI-----GADAIRTRRGQGYQL 216


>gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +G  L +  E+  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R + ++TPV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   D+++NL  + V +QG  + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK  I T+ G GY L
Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRL 216


>gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC2047]
          Length = 227

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 132/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED+  L   +   L ++ +++     GE+G+     + +D  I+DLGL  + G 
Sbjct: 1   MRALIVEDEPQLQQQLADTLCAKGYSLDRAGDGEEGLYYGNEFNYDIAIIDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    S PV IL+   + +DKV GL++GADDY++KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S I  G L +++  + V  +  ++ LT  EY+++E L L     ++K     H+Y 
Sbjct: 121 GKADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL +     N IET+ GRGY L
Sbjct: 181 QDYDRDSNVIEVFIGRLRKKL-DPDNLHNPIETLRGRGYRL 220


>gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+      + I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V ++G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220


>gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+      + I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219


>gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L ED++ L   I   L  + ++V     G   I++    E+DA+ILD+ +    GF
Sbjct: 1   MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR    +TPV  L+   ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S 
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DLS++  +  V   G  I L+ KEY M+E     +   L++EM  +H+++
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    I+DV+I  LRKK+ +    K  I TV GRG+++RE
Sbjct: 181 FDYEGGTNIVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMRE 222


>gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+      + I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219


>gi|257454835|ref|ZP_05620086.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
 gi|257447768|gb|EEV22760.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
          Length = 222

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A S+   L+ E + V     G + I   K   +D I+LDLGL +I G 
Sbjct: 1   MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR AKI TPV +L+    I+D+V+GL +GADDY++KPF   EL+AR+R +VRRS+
Sbjct: 61  SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + +  GDL+++++ K ++  G  I +T KEY ++       +   +K    N +Y+
Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                E   I+  I  LRKK+     G+  I+ + G G+ +   ++D
Sbjct: 181 WEAGIESNAIEFLIYGLRKKI-----GQKRIKNIRGLGWYISAESQD 222


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+     I      E + V     G +G+       FDA++LD  L  + G  
Sbjct: 4   RLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + 
Sbjct: 64  VIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++  +   DL ++L  + V   G  I LT +E+Q++E    RKN  +++ M L  ++D
Sbjct: 124 SEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++DV I KLRK+L + AGG   IETV G GY++ ++
Sbjct: 184 YHFDPNTNVVDVHISKLRKQL-DEAGGPPLIETVRGAGYMVSDD 226


>gi|241888759|ref|ZP_04776065.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC
           10379]
 gi|241864435|gb|EER68811.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC
           10379]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LA ++E MLK  N++V V + G+D ++     ++D  ILD+ +  + G 
Sbjct: 1   MRLLLAEDERDLADALEAMLKHNNYSVDVVNNGQDALDYLMLDDYDGAILDVMMPQMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  K STPV +L+  S IEDKV GL SGADDY++KPF   EL+AR+R++ RR  
Sbjct: 61  TVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTRELLARVRSMTRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G++S++     +  +  ++ L+ KEYQM+E+L       +  E FL  ++ 
Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E+ ++ V I  LRKKL  A     +I+     GY L
Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANIHIKATRNVGYTL 220


>gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 219

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   IE  L+   F V     G           +  ++LDLGL  +PG 
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKASLALDTTSYALVVLDLGLPRVPGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  ELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI   DLSVN  A+ VEV G R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++E E   I+V +  LRKKL     G N I TV   GYV+
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GANLIRTVRNIGYVV 216


>gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/227 (40%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M+ILL+ED+  L+ ++   LK  N   Y+ D+  DGI   ++ +   ++ IILD  L   
Sbjct: 1   MKILLVEDEVRLSEALVHTLKKNN---YIVDVAFDGITGQQMAETNMYNVIILDRMLPKK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   ++TPV IL+   S++++V GL SGADDY++KPF+K EL+ARIRA+ R
Sbjct: 58  DGLDVLRDLRKQGVTTPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGR 117

Query: 118 R-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R S       I  G++S N     ++V G  I LT KE Q++E+L   KN  ++KE  L 
Sbjct: 118 RQSEIFVNEEINIGNMSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  + + E+  I+V++  LRKKLS    G   IET+  RGY L+E
Sbjct: 178 KVWGFQTDIELNNIEVYLSYLRKKLSKLDCGI-VIETIRARGYCLKE 223


>gi|330993828|ref|ZP_08317760.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
 gi|329759096|gb|EGG75608.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
          Length = 245

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  +   L+S +++V     G  G+ +     FD +I+D  L ++ G  
Sbjct: 24  RILLVEDDSKIAQEVIEELESRHYHVQHEVSGAAGLAMGLNAHFDVMIVDRMLPELDGLS 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  ++  PV +LS +S+++D+V GL++G DDY++KPF  EEL AR+ A++RR   
Sbjct: 84  LIETLRERRVHVPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPDN 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  +TV  +G  I L  +E++++E L  R N  LT+ M L  +++ 
Sbjct: 144 SRHTMLRAGPLEMDLIERTVMREGVPIELLPREFRLLEYLMRRPNQVLTRNMLLEDVWNY 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ + +G    I+++ G G++LR
Sbjct: 204 RFIPQTNLVDVHIGKLRRKI-DESGRPPLIQSIRGAGFMLR 243


>gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
 gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
          Length = 219

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   ++S     +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY++I       +  +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++RKK++      N I+TV G GY L  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 135/226 (59%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED K+LA++I   L+   ++V +   G++G+   +   +D IILD+ L  I G 
Sbjct: 1   MRILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   + TPV  L+   SIED+V GL +GADDY+ KPF+ +EL+AR+RA++RR  
Sbjct: 61  TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL ++ +++ V   G  I LT KEY ++E L+  K   LT+     H+++
Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E    I+DV+I  LR+K+ +    K  I T+ G GY+LR+  +
Sbjct: 181 YDFEGTSNIVDVYIRYLRRKIDDGFPEK-LIHTIRGVGYMLRDEKR 225


>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 223

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLKRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL V+L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ N    K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKIDNTY-EKKLIHTIRGMGYVLEDRS 223


>gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 126/218 (57%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA ++++ L++  +      LG DG++L   +  D ++LDLGL D+ G EV
Sbjct: 4   VLIIEDEAQLARAMQINLRAHGYQAITAGLGADGLKLAAQHPVDIVVLDLGLPDMDGVEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    S PV +LS   + EDKV  L +GADDY++KPF  +EL+AR+RA  RRS   
Sbjct: 64  IRGIR-GWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRRSPAQ 122

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++  V T D  V+L A+ V   GH I LT  E+ ++ELL   +   ++++  L  ++  
Sbjct: 123 REAPTVETADFVVDLAARKVVRDGHEIRLTPTEWNILELLVRNQGKLVSQQQLLTQVWGQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + + V++ +LR+KL        ++ T  G GY
Sbjct: 183 AYAKETQYLRVYLAQLRRKLEQDPARPRHLHTEAGMGY 220


>gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C]
          Length = 222

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +K   +       GED   L     +DA+ILD+GL+ + G 
Sbjct: 1   MRILIVEDDRDLNHQLAKAVKDAGYVFDSAFNGEDAYFLGSTESYDAVILDIGLSCMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+   R    S PV +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS 
Sbjct: 61  QVVERWRKEGYSMPVLMLTARDCWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++     V ++G  I LT  E++++  L    +  ++K   + HLYD
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIEGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VFI +LRKKL     G + IETV G GY ++
Sbjct: 181 QDFDKDSNTIEVFIRRLRKKL-----GVDSIETVRGLGYRIK 217


>gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
          Length = 224

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV  L +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+      K  I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVK-LIQTVRGVGYVLK 221


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 131/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   AH +   L  + + V +   G  G+ L + +++D I+LD+ L  + GF
Sbjct: 1   MKLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +K  TPV +L+    ++D+V GL  GADDY+ KPF+  EL+AR++A+VRR R
Sbjct: 61  NVLRELRRSK-QTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL VNL A+     G R+ LTGKE+ ++ LL+ R+   L+K +    ++D
Sbjct: 120 QQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++V I +LR KL      K  + TV G GYVL
Sbjct: 180 INFDSNTNVVEVAIKRLRSKLDGPYPSK-LLHTVRGMGYVL 219


>gi|259047168|ref|ZP_05737569.1| response regulator [Granulicatella adiacens ATCC 49175]
 gi|259036218|gb|EEW37473.1| response regulator [Granulicatella adiacens ATCC 49175]
          Length = 245

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 138/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  +EL L+ E +   V   G  G++      +DAI+LDL L ++ G E
Sbjct: 20  RILIIEDEKNLSRFVELELQHEGYETKVCSDGRTGLQTAIDESWDAILLDLMLPEMNGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R LR  K  TPV I++   S+ D+V GL  GADDY+ KPF  EE++AR+RA+ RR   
Sbjct: 80  VVRRLRQVK-QTPVIIMTARDSVMDRVVGLDQGADDYVVKPFEIEEILARLRALFRRLQM 138

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              SR   Q+ +   DL + ++ + V   G  I LT KEY+++ LL    +  L++E+ L
Sbjct: 139 EEQSRNIKQTKVEYRDLVIEVENRVVRRAGEVIDLTKKEYELLLLLMENIDIVLSREILL 198

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++  ++E E  +IDV++  +R K+ +  G ++YI+TV G GYV+R
Sbjct: 199 KKVWGYKNEVETNVIDVYVRYIRNKI-DVPGKESYIQTVRGTGYVMR 244


>gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 640

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 125/222 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DD AL   +   L  + + V +   GE   E    + +D IILD+GL DI G 
Sbjct: 27  MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR  KI++P+ +L+   + + KV+ L +GADDY+ KPF+ EEL ARIRA+ RR  
Sbjct: 87  SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL V+ +   V  Q   + +T KEY M+EL     N   + +  +++L+ 
Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P    +   +  LR+KL      K++I+TV+G GY L+
Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248



 Score = 37.0 bits (84), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++++ I+DD  +   ++ +L    F     +  +   +  +    D +++D+ + +  G 
Sbjct: 512 LKVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGL 571

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ R LR  +     P+  LS       + +    GADD+ISK     EL  R+   ++R
Sbjct: 572 EICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKR 631

Query: 119 S 119
           +
Sbjct: 632 T 632


>gi|323528206|ref|YP_004230358.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385208|gb|ADX57298.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ ENF V     GE    +     +D ++LDL L  + G 
Sbjct: 1   MKLLLVEDNTELAHWIANLLRLENFAVDSVPDGECADVVLTTQRYDVVVLDLRLPRMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S +DKV    +GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  EVLARLRRRGDNVPVIMLTAHGSTDDKVDCFSTGADDYVVKPFDARELVARIKALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  GDL    D +       R+ L  +E+ ++E L LRK  T++K + +  ++ 
Sbjct: 121 GGMSSCLTCGDLQYLSDTREFFHNDARLALRRREHTVLETLMLRKGKTVSKAVLMESVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LSN++     I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLSNSSA---QITTLRGLGYILR 219


>gi|157374930|ref|YP_001473530.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157317304|gb|ABV36402.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPLLSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDIAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A +  PV IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQNLRDAGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L V+L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPQITSGALEVDLAAKQVSLNNEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N + T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPVVTIRGQGY 217


>gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G++G+       FD  ILDLGL  + G 
Sbjct: 1   MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGQNGVHALLHETFDLAILDLGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    + ++   + V  QG  + LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL+N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVHIYHLRKKLNNG-----LIRTVRGIGYLVEGKA 220


>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M++L++EDD  L   +   L +E    Y  D  ++G E C   +   +  I+LDLGL D 
Sbjct: 1   MKLLVVEDDALLLGGLVQALTTEG---YAVDAAKNGAEACALLQSGQYSLIVLDLGLPDR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR  R   I  PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++R
Sbjct: 58  DGRQLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +G + +L+  GDLS+NL ++ V +    + LT KE+ ++  L +R + T+ +E     
Sbjct: 118 RYQGRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQD 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY  +D+     ++V I  LR+KL     GK+ I+TV G GY L E
Sbjct: 178 LYSWQDDTGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLEE 218


>gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 226

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  ++  +   L+  NF+V +   G +  +L    E+  IILD+ L DI G 
Sbjct: 1   MDLLLVEDNSRISEFMVKGLQENNFSVTLAVNGVEARQLITSKEWSLIILDIMLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R  KI+TP+ ++S +   EDK++ L  GADDY+SKPF+  ELVARI A+ RRSR
Sbjct: 61  ELLQYTRFKKINTPILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALTRRSR 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               HA +L+    + +N+    V  +G  IHLT +E+++++LL    +  L++   +N 
Sbjct: 121 SENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTEIINS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    E    I+DV+I  LR K+ + +  K  IETV GRGY++R
Sbjct: 181 VWGLDYESNTNIVDVYISYLRNKIEDKSKAK-IIETVQGRGYIIR 224


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  SI   L+ + +       G++G+ELC    +D I+LDL L  I G 
Sbjct: 1   MHILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R    STPV ILS    IEDKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +S +   +   +    + LT KE  ++E   L +N  ++ E  + H++D
Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G        I V I  LRKKL  AA G + I+   G+GY+L E+ K
Sbjct: 181 GSVNSFSNSIRVHISSLRKKL-RAALGNDPIQNKVGQGYILMEDLK 225


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL LK E++NV +   G  G++      +D IILDL L +I G ++
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLKI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +++I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++A+   ++  L  E + V   D GED +      ++D IILD+ L    G 
Sbjct: 1   MRILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R   ISTP+ +L+ + S EDKV GL +GADDY+ KPF+  EL+ARIRAI+RR  
Sbjct: 61  KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     VE  G RI LT +EY ++E L    N  L++   + H+++
Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E  I+DV+I  LRKK+ N    K  I TV G GY++ E
Sbjct: 181 LDFYTESNIVDVYIRYLRKKIDNGFENK-LIHTVHGVGYMIGE 222


>gi|26989071|ref|NP_744496.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148548557|ref|YP_001268659.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24983899|gb|AAN67960.1|AE016428_8 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512615|gb|ABQ79475.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 222

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
 gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L ED++ L   I   L  + ++V     G   I++    E+DA+ILD+ +    GF
Sbjct: 1   MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR    +TPV  L+   ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S 
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DLS++  +  V   G  I L+ KEY M+E     +   L++EM  +H+++
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    ++DV+I  LRKK+ +    K  I TV GRG+++RE
Sbjct: 181 FDYEGGTNVVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMRE 222


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD I+LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++L    V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222


>gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
 gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + + L SE +             L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  +++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL ++ V +QG  I +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GLSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I T+ G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRL 216


>gi|313499571|gb|ADR60937.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 222

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTTGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
 gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
          Length = 219

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   ++S     +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY+++       +  +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++RKK++      N I+TV G GY L  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 139/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ EN+   V + G  G++      FDAI+LDL L D+ G E
Sbjct: 24  KILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 84  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 142

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTTLTK 171
              AQ++ V    +V     T+E     +H        LT +EY ++  L   KN  +++
Sbjct: 143 EKEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNNVVSR 202

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 203 DELLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRDEDDDK 258


>gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 225

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD  +A  +   L+     V     G +G+       FD I+LD  L  + G 
Sbjct: 1   MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R    +TPV ILS +  +++++RGL++G DDY+ KPF   ELVAR+ A+ RR  
Sbjct: 61  KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A++  + +GDL+++L  +TV   G RI LT +E++++E L       +T+ M L H++
Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  IID  + +LR+KL         IETV G GYV+R +
Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGF-DTPLIETVRGTGYVVRPS 224


>gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+ ALA  ++  L++  F V     GE+G  L     +DA +LDLGL  + G 
Sbjct: 1   MRILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +K++G  +GADDY++KPF  +E+V R+RA++RR+ 
Sbjct: 61  SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+Q  +  G + ++ +   V + G  + LT +E++++  L       +++   + H+YD
Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LRKK+     G   I+TV G+GYVL
Sbjct: 181 RNFDSDSNVLEVMIGRLRKKI-----GAEMIQTVRGQGYVL 216


>gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii]
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  LA  +E  L++  + V     G+    L     FDA++LDLGL  + G 
Sbjct: 1   MRVLLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+   S  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V + G  I LT  E++++ +L       ++++  + HLY 
Sbjct: 121 VHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   IDVFI +LRKKL       + IETV G GY L  N+
Sbjct: 181 QDFDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRLAGNS 220


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220


>gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
 gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
          Length = 224

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 131/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L+H ++  L      V      E+G+   + Y  D  ++D+GL D  G 
Sbjct: 1   MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  PV IL+  ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMSAGDIRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + E +   I+V I +LRKK     G  N I T+ G+GY+    A+
Sbjct: 181 DQ-EGDPNTIEVMISRLRKKFIT-TGQDNPITTIRGQGYIFELQAQ 224


>gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+      + I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLA-----VDLIQTVRGLGYLIDPN 219


>gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 223

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+ G+ L     FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLKRLRAEK-QTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +++  D+ ++L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RSIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ NA   K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKVDNAY-DKKLIHTIRGMGYVLEDRS 223


>gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis
           z3032]
 gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis
           z3032]
          Length = 220

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +G  L +  E+  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R + ++TPV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   D+++NL  + V +QG  + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK  I T+ G GY L
Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRL 216


>gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 138/232 (59%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A ++  +L+  N++V +   GEDG++      +DA+ILD+ L    G 
Sbjct: 1   MKILIVEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR +KI  PV +L+  S  EDKV+GL  GADDY+ KPF  EEL+AR+RA+ RR +
Sbjct: 61  SVLKLLRESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALTRR-K 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G      ++  GD+S+N     +  + ++I+LT KE Q +ELL   KNT ++KE  +  L
Sbjct: 120 GELIFDGIMKFGDISLNPHLLLLSCRDNKINLTLKESQALELLITNKNTAVSKETIIEKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +    E E    ++ I  LRKKL   AG    I+ + G GY+++   ++  C
Sbjct: 180 WGYDSEAEDNHAEIHISLLRKKLKQ-AGSVLLIKAIRGIGYIIKYPEEESAC 230


>gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
 gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L+  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +A G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 220

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   +   L+ E F V     G   ++       D +ILD+ L DI GFE
Sbjct: 7   RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L    + TPV  L+   + EDKVRGL  G DDY++KPF+  ELVAR+ AI+RR+RG
Sbjct: 67  VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S +V  DL ++ D   V   G  I LT  EY+++  L       LT+   L+H++D 
Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWDY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL---RENAKDET 229
               +  +++ +I  LRKK+   A G   I TV G GY L   REN K +T
Sbjct: 187 DFGGDSGVLETYISYLRKKID--AEGPPLIHTVRGVGYTLRLPRENEKSKT 235


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K L  SI   L+ + +       G++G+ELC    +D I+LDL L  + G 
Sbjct: 1   MHILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R +  STPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +S +   +   + G  + LT KE  ++E   L +N  ++ E  + H++D
Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G        I V I  LRKKL  A G  + I+   G+GY+L E+ +
Sbjct: 181 GSVNSLSNSIRVHISSLRKKLRTALGF-DPIQNKIGQGYILTEDIQ 225


>gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 220

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 134/222 (60%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L   I+  L+ E F V +   G    E      ++ I+LDL L    G 
Sbjct: 1   MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR   I TPV IL+   S+EDK++GL +GADDY++KPF+ +ELVARI+A++RR  
Sbjct: 61  SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++  GD+ V+L  + V+V+G  + LT  E +++ +L+L+ N  L+K      LY 
Sbjct: 121 NVSKGIVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P+  +I+V I +LRKKL        YI+TV G GY+L+
Sbjct: 181 WEGSPDSNVIEVLISRLRKKLDPEG---KYIKTVKGLGYILK 219


>gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
 gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
          Length = 225

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED++ LA ++E MLK  N++V   D G+D ++     ++D  ILD+ +  + G 
Sbjct: 1   MRILLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  K STPV +L+  S IEDKV GL SGADDY++KPF  +EL+AR+R++ RR  
Sbjct: 61  TVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G++S++     +  +  ++ L+ KEYQM+E+L       +  E FL  ++ 
Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E+ ++ V I  LRKKL  A      I+     GY L
Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANVQIKATRNVGYTL 220


>gi|188580305|ref|YP_001923750.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343803|gb|ACB79215.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 222

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+AL+  +   L++E F + +   G D   L +   +DA++LDLGL    G 
Sbjct: 1   MKILLVEDDEALSAELAKALRAEGFAIDLARNGIDAGHLGETETYDAVVLDLGLPQRDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A  + PV IL+      DKV G ++GADDY+ KPF  EELV R+RA++RR++
Sbjct: 61  SVLQDWRSAGRTVPVLILTARDGWSDKVAGFKAGADDYLVKPFRVEELVMRLRALMRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  G L+ +    T E  G  + LTG E++++  L LR+   + +   +  +YD
Sbjct: 121 ANGAARVACGPLTFDAGLGTFEHHGLPLRLTGLEWRVLCALILRREAVVPRGQLIERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   ++V I +LR+K++ AA     IETV G GY L
Sbjct: 181 GDAEVDSNSVEVIITRLRRKIAPAA-----IETVRGHGYRL 216


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  +EL L+ E ++V V   G +G+ L     FD ++LD+ L  I G E
Sbjct: 26  KILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGIE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR+  
Sbjct: 86  ICRRVRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +   D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  +
Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E  ++DV+I  LR KL        YIETV G GYV+RE
Sbjct: 205 WGYDTDIETNVVDVYIRHLRTKLPGDTNA--YIETVRGVGYVMRE 247


>gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALAQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +A G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 230

 Score =  149 bits (375), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 126/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  LA ++   L ++ + V +   GE   +  +  ++D ++LDL L  + GF
Sbjct: 1   MKILLVEDDILLAENLSEALTNQRYVVDLVTNGEIACQQSQMLDYDLMVLDLTLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      P+ +L+G  +  DKV+GL +GADDY+ KP +  EL ARIRA++RR +
Sbjct: 61  GVCRKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDL ++     V      IH T KEY ++E L       LT+ + + H++ 
Sbjct: 121 SIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + PE + ++ +I  LR+KL  A   ++ IETV   GY L++
Sbjct: 181 FENPPEEETVNAYIKSLRRKLRLAGAPRDLIETVHSVGYRLKQ 223


>gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 224

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LDLGL  + G 
Sbjct: 1   MRLLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G + ++L A  V V GH I LT  EY+++  L   K   +++     HLYD
Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   ++VF+ +LRKKL     G   IET+ G GY + +  +D
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GGEPIETIRGLGYRMGDPVED 222


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V   G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL     G + I+TV G GY+L   A D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKL-----GVDIIQTVRGLGYLLSPPAAD 222


>gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 221

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLEADGATAHGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L+++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLAIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL   AG    I TV G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRRKL---AGSSVEIRTVRGMGY 216


>gi|120598570|ref|YP_963144.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293351|ref|YP_001183775.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558663|gb|ABM24590.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145565041|gb|ABP75976.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319426651|gb|ADV54725.1| two component transcriptional regulator, PhoP [Shewanella
           putrefaciens 200]
          Length = 224

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDVILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A++  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQQLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 217


>gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 230

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +    K   +   ++  GEDG++  +   FDA ++DL L  + G 
Sbjct: 7   MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++  +R  K    + +LS   S+EDKVR L+SGADDY+ KPF   EL+AR+ AIVRR S
Sbjct: 67  SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R      + +  + ++L A   + +G RI L  +E+ ++ELL   +   LTK   L  L+
Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  ++DV +C+LR KL      K  I T+ G GYV R
Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKLDRGFDTK-LIHTLRGIGYVFR 228


>gi|115523977|ref|YP_780888.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517924|gb|ABJ05908.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 219

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  LA  I   L+   + V  +  GEDG  +     +DA+ILDLGL  + G 
Sbjct: 1   MRILLIEDDSRLARQIAEALQRAGYIVDRSADGEDGWFMGDSAIYDAVILDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R AK S PV IL+   S  +KV GL+ GADDY++KPF  EEL+ARI A++RR+ 
Sbjct: 61  AVLRRWRAAKRSMPVLILTARGSWREKVMGLREGADDYLTKPFEMEELLARIEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+I    L ++  A+ +      + LT  EY+ +    +     ++K     H+Y 
Sbjct: 121 GHASSVIDVAGLRLDPAAQRIVRNDEVLDLTSLEYRALSYFMMHPAKVVSKTELTEHIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ +  +I+V + +LRKK+     G   I T  G+GY L
Sbjct: 181 QDDDRDSNVIEVLVNRLRKKI-----GAELIRTRRGQGYEL 216


>gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
 gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
          Length = 223

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + I++ L    F V + TD G+ G+   +   +DA++LDL L  + G
Sbjct: 1   MRILLIEDDALIGNGIQIGLTKSGFAVDWFTD-GKSGLAAAQAAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+A R      PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LDVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GHA  +I    +  + + + V +    I LT +EY+++EL  L K   LT++     LY
Sbjct: 120 YGHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  DE     ++V I  LR+KL     GK +I TV G GY L +N
Sbjct: 180 NWDDEVNSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219


>gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 223

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + I++ L    F V + TD G+ G+E  +   +DA++LDL L  + G
Sbjct: 1   MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTD-GKIGLEAAQSAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+A R   I  PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR+ A++RR 
Sbjct: 60  LDVLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GHA  +I    +    + + V +    I LT +EY+++EL  L K   L++      LY
Sbjct: 120 YGHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +E     ++V I  LR+KL     GK +I TV G GY L +N +++
Sbjct: 180 TWDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDEED 223


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   L+ +++ V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  A    V G  + LT  E++++  L    +  +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G   IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GVELIETVRGLGY 214


>gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 222

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K+LA  I+  L+ E + V V   GE+G+ + +    D IILD+ L  + G 
Sbjct: 1   MRILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPIVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R A + TPV +L+   ++ DKV GL SGADDY++KPF+ EEL+ARIRA++RR  
Sbjct: 61  TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I   DL +N+    V   G +I L+ KEY ++E +++ KN  L++   + H+YD
Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDVFI +LR K+     GK  I TV G GY+L+E
Sbjct: 181 ENSDFDSNVIDVFINRLRNKIDREF-GKKLIHTVRGAGYILKE 222


>gi|115350078|ref|YP_771917.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115280066|gb|ABI85583.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 225

 Score =  148 bits (374), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             DEP    ID++I +LRK L   AG    I T+ G GY+LR  +
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTTEIITLRGLGYILRAKS 222


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 135/231 (58%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD+  A+++  +L ++N   Y  ++G DGI   EL + Y++D I+LD+ L  +
Sbjct: 1   MKILIVEDDELNAYALTAVLTNQN---YAVEVGSDGITAWELIQTYDYDLILLDVMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + R +R +    P+ +L+G  S  +K  GL +GADDY+ KPF++EELVAR+RA++R
Sbjct: 58  DGISLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R    AQ ++  G+L ++  +  V    + + LT KEY ++EL         +  M L H
Sbjct: 118 RGVTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++   D P  + +   I  LR KL NA    + +ETV+G GY L+   +++
Sbjct: 178 IWSYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQ 228



 Score = 45.4 bits (106), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD  +   ++ +L+   + V+    G++ I        D I+LDL +  + G+E 
Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438

Query: 63   LRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD--DYISKPFNKEELVARIRAIVRRSR 120
            +  L+ +  +  + I+  + S+       Q   D  D++SKP  +  L+  +R  + +S 
Sbjct: 1439 MAMLKESTETKHIPIV--ICSVYKPTSNHQPSRDFVDWVSKPVQESYLLHSLRQAIAKSS 1496

Query: 121  GHAQSLIVTGD 131
               + LIV  D
Sbjct: 1497 HRVRILIVEDD 1507



 Score = 38.5 bits (88), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L ++DD  +   ++ +L      V   D      E  +    D +ILD+ +    G E
Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R     +  P+  L+     E   +    GADD++SKP    ELV RI
Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRI 492


>gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
 gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
          Length = 222

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL++EDD+ L H +   +K      YV+D    GEDG  L     +DA+ILD+GL+ +
Sbjct: 1   MRILIVEDDRDLNHQLAKAVKDAG---YVSDSAFNGEDGYFLGSTEPYDAVILDIGLSRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V+   R    S P+ +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++R
Sbjct: 58  DGIQVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS GHA + +  G++ ++     V V G  I LT  E++++  L    +  +++   + H
Sbjct: 118 RSAGHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAYLMHHCDKVVSRTELIEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LYD     +   I+VFI +LRKKL     G + IETV G GY ++
Sbjct: 178 LYDQDFNKDSNTIEVFIRRLRKKL-----GVDSIETVRGLGYRIK 217


>gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 223

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/223 (40%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L+   G+
Sbjct: 1   MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+      K  I TV G GYV R+
Sbjct: 181 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 222


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V V   GE    L     FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A+ + PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V + G  + LT  E++++ +L  R    +++   ++H+Y 
Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDVFI +LRKKL         IETV G GY L
Sbjct: 181 QDFDRDSNTIDVFIARLRKKLP-----PGTIETVRGLGYRL 216


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 137/228 (60%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K+LA  ++L L+ E + V V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   RILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  H Q+ +   D+ +  + + V      I+LT +EY+++ LL    N   ++E  
Sbjct: 122 ETQDSTFH-QTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LN ++   D  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 181 LNKVWGVDDGVETNVVDVYIRYLRNKI-DVKGRPSYIQTVRGTGYVMR 227


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 131/224 (58%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A+ +   L  E F V V   G  G+E  +    D ++LDL L  I G E
Sbjct: 4   RILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ IL+   S+ D+V GL++GADDY+ KPF   EL+ARIR  +RR + 
Sbjct: 64  VARRLRAAS-DVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             QS I+   +L+++  A+ + +   RI LT KEY +++L     N  LT+E+  + ++ 
Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  II+V++  LR+KL  A GG   I+TV G GY+LRE+
Sbjct: 183 YDFGGESNIIEVYVRYLRQKL-EAGGGSRVIQTVRGAGYILRED 225


>gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 224

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPLMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G L ++  A  V + G  + LT  EY++++ L   ++  +++   + HLYD
Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL    GG   IETV G+GY + +  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL----GGAELIETVRGQGYRMHDGG 221


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD+  A+++  +L ++N   Y  ++G DGI   EL + Y++D I+LD+ L  +
Sbjct: 1   MKILIVEDDELNAYALTAVLTNQN---YAVEVGSDGITAWELIQTYDYDLILLDVILPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + R +R +    P+ +L+G  S  +K  GL +GADDY+ KPF++EELVAR+RA++R
Sbjct: 58  DGISLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R    AQ ++  G+L ++  +  V    + + LT KEY ++EL         +  M L H
Sbjct: 118 RGGTTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-----ENAKDE 228
           ++   D P  + +   I  LR KL NA    + +ETV+G GY L+     + +KDE
Sbjct: 178 IWSYEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGSKDE 233



 Score = 43.9 bits (102), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 4/131 (3%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD  +   ++ +L+   + V     G++ I        D I+LDL +  + G+E 
Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440

Query: 63   LRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD--DYISKPFNKEELVARIRAIVRRSR 120
            +  L+ +  +  + I+  + S+       Q  +D  D+ISKP  +  L+  +R  + +S 
Sbjct: 1441 MAMLKESTETKHIPIV--ICSVYKPTTNNQPSSDFVDWISKPVQESYLLHSLRQAIAKSS 1498

Query: 121  GHAQSLIVTGD 131
               + LIV  D
Sbjct: 1499 RRVRILIVEDD 1509



 Score = 38.5 bits (88), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L ++DD  +   ++ +L      V   D      E  +    D +ILD+ +    G E
Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R     +  P+  L+     E   +    GADD++SKP    ELV RI
Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRI 494


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ +AH++   L  +++ V V   G+ G E  + + +D I+LD+ L  + G 
Sbjct: 1   MKVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR    +TP+ +L+   S   K+ GL +GADDY+ KPF+  EL ARIRAI+RR  
Sbjct: 61  SLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ TG L +N +   V      ++LT KEY ++EL         ++   L+HL+ 
Sbjct: 121 AALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + P    +   I  LR KL  A    + +ETV+G GY L+   + E
Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRLKPEKRQE 228


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K +A  +EL L+ E ++V V   G +G+ L     FD ++LD+ L  I G E
Sbjct: 26  KILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR+  
Sbjct: 86  ICRRIRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +   D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  +
Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E  ++DV+I  LR KL        YIETV G GYV+RE
Sbjct: 205 WGYDTDIETNVVDVYIRHLRSKLPGDTNA--YIETVRGVGYVMRE 247


>gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 223

 Score =  148 bits (373), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  ++E  L++  F V     GEDG  L     +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDEPQLTLALERALEAAGFAVDTAYDGEDGWHLGDTESYDAVILDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV +L+  +   +K +   +GADDY++KPF  EE+V R+RA++RR+ 
Sbjct: 61  SVLGRWREAGRAMPVMVLTARARWAEKSQAFNAGADDYVTKPFEMEEVVTRVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   I  G L ++     V   G  I LT +E++++  L+  +   +++   + H+YD
Sbjct: 121 GHASPEITCGPLRIDTVGGRVSRAGLPIALTAQEFRILSYLAHHQGRVVSRSELVEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P+  ++DV + ++R+KL     G + I T+ G+G+
Sbjct: 181 RDADPDSNVLDVLVARIRRKL-----GVDVIHTLRGQGW 214


>gi|87118795|ref|ZP_01074694.1| two-component system, regulatory protein [Marinomonas sp. MED121]
 gi|86166429|gb|EAQ67695.1| two-component system, regulatory protein [Marinomonas sp. MED121]
          Length = 223

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  +I   +  +   V +   G D  ++ +  E+D ++LDL L  + G 
Sbjct: 1   MRILVVEDDDVLGEAISQRMLKQGHGVDLATSGADANDILRHQEYDLVVLDLNLPGMNGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LRV + +TPV IL+  + +ED+++ L  GADDY++KPF+  E  AR RA++RR +
Sbjct: 61  QVLNKLRVRQTNTPVLILTARNQVEDRIQLLDLGADDYLTKPFDFGEFDARCRALLRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ++I  G+LS++  A  V V    + L  +E++++E+        L+K+  ++HLY+
Sbjct: 121 GQAQNVISYGNLSLDRKACCVYVDQVLVDLKQREFRLLEIFITHTGWVLSKDDLIDHLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + P    I++++ +LRKKL  +A     I T+ G GY+L E
Sbjct: 181 FDEPPSPNAIELYVARLRKKLQTSAVE---IRTLRGLGYILEE 220


>gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 220

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L+ E + V   + G DGI   +  +F A+ILDLGL DI G 
Sbjct: 1   MRVLLVEDDPLLGDGIRTALQREGYAVDWLETGRDGIAAIRHDDFSAVILDLGLPDIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R A  S PV IL+   ++E ++ GL  GADDY+ KPF+ +EL+AR+R I+RR+ 
Sbjct: 61  EVLDKIRHAG-SLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLRVIMRRAE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  L+  G+L ++     V  QG+ I LT +EY ++  L+      +T+    + LY 
Sbjct: 120 GRSSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPHLEDLLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LRKKL      ++ I TV G GY L
Sbjct: 180 WEDEVASNAVEVHVHHLRKKLD-----RHLIATVRGVGYRL 215


>gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
 gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 127/221 (57%), Gaps = 8/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+ED+  LA  +   L  + +   ++TD G D         +D IILDLGL   PG
Sbjct: 1   MRLLLVEDNVPLADELVASLSRQGYATDWLTD-GRDAEYQGATEPYDLIILDLGLPGKPG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL A R A ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL+ RI+A++RR+
Sbjct: 60  LEVLHAWRAAGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRA 119

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G A Q ++  G L ++   +     G  I LT  E++++    L     L+K     HL
Sbjct: 120 HGLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           YDG  E +  +I+V + +LR KL     G+  IET  G+GY
Sbjct: 180 YDGETERDSNVIEVHVNRLRGKL-----GRELIETRRGQGY 215


>gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 219

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   ++S     +V +L +DGI+        E+DA++LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQI---IESLEKTGWVPELSQDGIDALYRATSEEWDAMVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY+++       +  +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++RKK++      N I+TV G GY L  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQLNAN 219


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  A  +   L    + V +   G D +       +DAI+LDL L  + GF
Sbjct: 1   MRVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A+  +P+ +L+    ++D++ GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GD+ ++  A++V+  G  + L+ KE+ ++ELL  R    LT+   L+H++D
Sbjct: 121 VERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    ++D ++  LR+K+ + A G + IETV G GY LR
Sbjct: 181 LGYDGTSNVVDQYVRYLRRKI-DPADGLSRIETVRGAGYRLR 221


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 132/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L +E + V V + G  G  + +   +D IILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A++ TP+ +L+      D+  GL  GADDY++KPF+   L ARIRA++RRS 
Sbjct: 61  QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A ++   GDL ++  AKTV      I LT KE+ ++E L+ R    ++K   L H++D
Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +V I++V+I  LR+KL +A  G+  I T+ G GY L
Sbjct: 181 FAYDGDVNIVEVYISYLRRKL-DAPFGRQAITTLRGAGYRL 220


>gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  S+   L+   + V +   GE G+ L +   +DA++LD+ L  + G 
Sbjct: 1   MRVLLVEDSPRLQRSLGAALRKSGYAVDIAGDGEQGLWLAETNSYDAVVLDIMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     T + +L+   +++D+VRGL  GADDY+ KPF  EEL+AR+ A+ RR+ 
Sbjct: 61  SVVRQLRAKGRDTHILLLTAKDTVDDRVRGLADGADDYLVKPFALEELLARVHALCRRTY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I    L +N  +KTV+   H + L  +EY+++E L+ R    +T+     H+YD
Sbjct: 121 GGKSTSICVAGLELNTSSKTVKRGEHIVDLLPREYRLLEYLAARTGQVVTRTEIETHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               P   ++D  IC LRKK+ N       I T  G GY+ 
Sbjct: 181 DLATPMSNVVDSAICALRKKIGN-----ERIRTRRGLGYIF 216


>gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
 gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
          Length = 220

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L +E +    T    +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
 gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
          Length = 231

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD +L+  +E  L+     V VTD G+  + LC    +D  I+D  L  + G 
Sbjct: 1   MRVLLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +++ALR A++ TP+  L+ +  ++D+V GL++G DDY++KPF   EL+AR+ A+ RR+ 
Sbjct: 61  SLVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAV 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I  GD+ +NL   +   +G  + L  KE++++EL        +T+ M L H
Sbjct: 121 LKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  +++  I +LR KL     G   I+TV G GY L + +
Sbjct: 181 VWDIHFDPQTSVVETHISRLRNKLEKPF-GDTLIQTVRGVGYKLEQKS 227


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  I + L+ E + V     G   +   K +  DA++LD+ L D  G 
Sbjct: 11  LRVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R    S PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 71  EVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAG 130

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  A S +V GDL ++ D++ V   G  + LT  E++++  L       L+K   L+ 
Sbjct: 131 AQQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDR 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+   AG +  I T+ G GYVL+
Sbjct: 191 VWNYDFGGQANVVELYISYLRKKID--AGHEPMIHTMRGAGYVLK 233


>gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 127/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  ++   L      V +   G     L +   FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +L+  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KLS   G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRRKLS---GSSVEIRTARGMGY 216


>gi|114328319|ref|YP_745476.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316493|gb|ABI62553.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 237

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+ +  S++  L + N++  +   G  G+E      FD +I+D  L ++ G  
Sbjct: 7   RVLVIEDDEEVGPSLQSNLLARNYDTQLAITGTQGLEAATKSGFDVMIVDRMLPELDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   I TP  +LS + +++D++ GL++G DDY+ KPF+ EELVARI A+VRR   
Sbjct: 67  LIGRLREQNIQTPALVLSALGAVDDRIEGLRAGGDDYLVKPFSLEELVARIEALVRRPVS 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  G L ++L  +T+  +   + L   E +++E +  R +  +T+ M L  ++  
Sbjct: 127 QASLQLRAGPLRLDLLNRTLSCEDKTVDLLAMELKLLEYMMRRPDQVVTRAMLLEDIWRY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           R  PE  ++DV + KLR+KL+  AGG   I TV G G++LR  A+
Sbjct: 187 RFLPETNLVDVHMGKLRRKLAE-AGGDGLIHTVRGAGFMLRIPAE 230


>gi|312960053|ref|ZP_07774566.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285710|gb|EFQ64278.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 222

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D     +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAAYQGRSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A + TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLAQWRAAALVTPVLILTARDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPTLQAAGLHLDEGRQCVLRDGEEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +++V +  LR+KL     G++ IET  G+GY
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGY 215


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alteromonas macleodii
           ATCC 27126]
          Length = 226

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 128/220 (58%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  E         G  G +     E DA+ILD+ L ++ GF
Sbjct: 1   MKVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV +LS  S +EDKV+GL++GA+DY++KPF  EEL+AR+  +  R++
Sbjct: 61  SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++LI  GDL+++L  + V      I L  KE+Q++E L   K   +T+ M L  ++
Sbjct: 121 EGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +P+  +IDV I +LR+K+  A      IETV G GY
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 127/224 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ LL+EDD+ +A S+   L   N+ + V   GE+G +    +++D I+LD+ L  + G 
Sbjct: 1   MKFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR      PV +L+   S  DKV GL +GADDY+ KPF+ +EL+ARIRA++RR  
Sbjct: 61  ELCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++    TV  +   + +T KEYQ++EL        L++   L+HL+ 
Sbjct: 121 TTISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    + V I  +R+KL  A    ++IETV+G GY L +N
Sbjct: 181 SIDPPGQDTVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224


>gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
          Length = 220

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R   
Sbjct: 61  KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQLRNQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS+++ GDL ++  AK V + G+ I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family
           [Brucella suis ATCC 23445]
          Length = 229

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIIEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV GRGY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGRGYRMRSGGEGEA 224


>gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  147 bits (372), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+   + V     GEDG  L     +DA++LDLGL  + G 
Sbjct: 16  MRILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 76  SVLENWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++L +  V V G  + LT  EY+++  L   +   +++     HLYD
Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VF+ +LRKK+     G + IET+ G GY L
Sbjct: 196 QDFDRDSNTVEVFVGRLRKKI-----GSDMIETIRGLGYRL 231


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 127/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A+ +   L  + + V +   GE G E  + + +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +  S PV +L+   + EDKV GL  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++  +  V      +HLT KEY ++EL    +N  L++   L++L+ 
Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I  LRKKL       ++IETV+G GY L++
Sbjct: 181 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 223


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETHVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 29  VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 89  SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V+GH + LT  EY+++  L       +++   + HLYD
Sbjct: 149 GHAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL       + I+TV G GY+L     D
Sbjct: 209 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPPAD 250


>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
 gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/229 (38%), Positives = 131/229 (57%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL + R  K   PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GHAQS +  G  SV LD +T  V V G+ I +T  EY+++  L       +++   + HL
Sbjct: 121 GHAQSELTCG--SVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           YD   + +   I+VF+ ++RKKL     G   I+TV G GY+L   + D
Sbjct: 179 YDQDFDRDSNTIEVFVGRIRKKL-----GVEIIQTVRGLGYLLAPPSPD 222


>gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 223

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 134/224 (59%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L  +I   +      + +   G    ++    E+D ++LDL L D+ G 
Sbjct: 1   MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR    +TPV +L+    I+D++  L  GADDY++KP +  EL AR RA++RRS+
Sbjct: 61  QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ I  G++S+NL A +V V G+ I L  +E++++E+        L+KE  + H+Y+
Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + P   +I++++ +LRK L ++      I T+ G GY+L ++
Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDIN---IRTIRGLGYLLEKH 221


>gi|157961570|ref|YP_001501604.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157846570|gb|ABV87069.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 224

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR   +  PV IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQSLRDEGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPQITSGALELDLAAKQVSLNEQPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPIVTIRGQGY 217


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMYGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  147 bits (372), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L++  + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R  +   PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++     V V G  + LT  EY++++ L   +++ +++   + HLYD
Sbjct: 121 GHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKK+     G + IET+ G+GY LR
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GIDLIETIRGQGYRLR 217


>gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 219

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +   L +  F   V   G + ++      FD ++LDLGL D  GF+
Sbjct: 3   RILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDTDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R   +  PV IL+    + D V GL+ GADDY++KPF  EEL+AR+R  +R  R 
Sbjct: 63  VLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNERP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L+++L  + V V+G  + LT +E+ ++ELL       LT++  L+H++  
Sbjct: 123 TELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DVF+  LR+K+     G   I TV G GY L
Sbjct: 183 DYDPGSNVVDVFVRALRRKV-----GAERIVTVRGMGYRL 217


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKEA 220


>gi|78062614|ref|YP_372522.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77970499|gb|ABB11878.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 226

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 129/231 (55%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +      I++++ +LRKKL N       I T+ G GY+L   AK ET E
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGIA---IVTLRGLGYLL--EAKAETAE 226


>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 220

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D  +LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220


>gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G L ++       V G  + LT  EY+++  L    +  +++   + HLYD
Sbjct: 121 GHASSELVCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R E   DET
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRIRSEEGGDET 225


>gi|212635060|ref|YP_002311585.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212556544|gb|ACJ28998.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR   +  PV IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQSLRDNGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPKITSGALEIDLAAKQVSMNEEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-DGLENPIATIRGQGY 217


>gi|197336075|ref|YP_002155282.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11]
 gi|197317565|gb|ACH67012.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11]
          Length = 226

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+I L+ED++ L H +   LK +   VY        ++  +  E  D +I+DLGL D  G
Sbjct: 1   MQIALVEDNEILNHHLSSQLKDQGHVVYSDKTASAFLQTVQKKEHIDVMIVDLGLPDFDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ +R  +I++P+ IL+   + +DKV GL++GADDY+ KPF  EEL+AR+ A+ RR+
Sbjct: 61  ITLIKQIRRKEINSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  QS +   ++ +++ AKT+ V G  + LT  EY +   L       ++K+ F++ LY
Sbjct: 121 AGFTQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E ++  I+V I +LRKK + A G    I TV G+GY  +  AK
Sbjct: 181 QEDSEVQLNNIEVIISRLRKKFA-AVGHSELITTVRGQGYQFQIKAK 226


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKDA 220


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + +++ +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|217973027|ref|YP_002357778.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304409091|ref|ZP_07390712.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303094|ref|ZP_07582849.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|217498162|gb|ACK46355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304352912|gb|EFM17309.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306913454|gb|EFN43876.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315267915|gb|ADT94768.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 224

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR A +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 217


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+E  K   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R  K   PV IL+   +++++V GLQ GADDY+ KPF   E++AR++A++RR  
Sbjct: 61  DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I    +  + + + V ++   + LT +EY+++EL  L K+  L++ M    LY+
Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     ++V I  LR+KL     GK +I TV G GY L +N
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219


>gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 265

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   +E  L  +N+   +     +  ++     FDA++LDLGL D  G 
Sbjct: 45  MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R +  + PV +LS   ++ D+VRGL  GADDY+ KPF+ +E+VAR+R+++RR  
Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G + ++L  ++V   G  + LT +EY ++EL        LT+ +    +++
Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E  +IDV++ +LR+KL  A G    I+T+ G GY L
Sbjct: 225 ASYDLETNLIDVYVRRLRQKL-EAPGQPPLIKTIRGTGYQL 264


>gi|94311948|ref|YP_585158.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93355800|gb|ABF09889.1| Two component heavy metal response transcriptional DNA binding
           regulator, winged helix family precursor [Cupriavidus
           metallidurans CH34]
          Length = 221

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED + LA ++   L+SE    Y  D   DG+   KF   Y +DAIILDL L  +
Sbjct: 1   MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VLRAL     + PV +LS    ++D+VR L +GADDY++KPF   EL+AR+RA+VR
Sbjct: 58  DGFGVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++  GDL V+  ++    +   + LT KEY +++LL  R+  TL++     H
Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LYD R +   K+++V +  LR KL+   G    I T  G GY+L
Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLAQ-CGLDELIVTRRGFGYIL 220


>gi|296104894|ref|YP_003615040.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059353|gb|ADF64091.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 220

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALSNEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLSQWRRRGVDNPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLCQSLPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216


>gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum
           V4]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  I   L+ E F V     G++ + +     +DA +LD+ L    G 
Sbjct: 1   MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR   IS P+ +LS  S   DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ 
Sbjct: 61  SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G+L++NL  + V     +I LT KE+ ++ELL        T+      +++
Sbjct: 121 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++DV+I KLRKK+      K  I+TV G GY
Sbjct: 181 YHFDPGTNLVDVYIQKLRKKIDEGEEQK-LIQTVRGVGY 218


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 135/227 (59%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ +   +   L  E ++VY    G +G+ +    + D IILD+ +  + GFEV
Sbjct: 5   ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 65  CRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKDSG 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           SR  +Q LI   D+ ++LD++ V   G R+ LT KE++++ L        LT+++ ++ +
Sbjct: 125 SRSGSQRLIFE-DIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E  +++V+I  LR+K +   GGK  I+T+ G GY+LR  A
Sbjct: 184 WGYDYSGESNVLEVYIAMLRQK-TEEHGGKRVIQTIRGAGYILRGEA 229


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  +EL L+ E +   V   G  G+EL    ++DAI+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G+ Q+ +   DL++  + + V      I LT +EY+++  L    N  L ++  L
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE +  +I+V + +LR+KL   AG K  I+TV G GY+  E  +
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEAPAGFKP-IDTVRGLGYLFNERCQ 225


>gi|94497683|ref|ZP_01304251.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94422900|gb|EAT07933.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 236

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+A   +I  +L +    V  T  G  G+        D +ILD  L  + G ++
Sbjct: 9   VLLVEDDEAARTTIAAILTAAGMTVEQTADGPTGLNRAGSGGHDVVILDRMLPHLSGIDI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  +R+A I  PV +LS +   E +V GL+SG DDY++KPF  +ELVAR+RA+ RR SR 
Sbjct: 69  VTRMRLAGIGAPVLMLSALGRSEHRVEGLESGVDDYLAKPFEPDELVARVRALWRRASRR 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S+++ GDL  ++ A+T   QG  + L+ KE+++   L       +T+EM L H++  
Sbjct: 129 SHESVLLFGDLECHVKARTAFRQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVWKL 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P+  ++DV + +LR+KL         +ETVWG GY L
Sbjct: 189 SFDPQTNVVDVNVGRLRRKLEEGF-DTPVLETVWGTGYRL 227


>gi|296111541|ref|YP_003621923.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295833073|gb|ADG40954.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 141/225 (62%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA +I   L+ +  +V V D G DG    +   +D II DL L    GF
Sbjct: 5   IKILLIEDDVNLADNIVGFLQ-DFADVNVVDNGLDGEFEGQESPYDLIISDLMLPGENGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   I TPV IL+  SS++DK+ G   GADDY++KPF +EEL+ R++A++RR+ 
Sbjct: 64  EVIKYLRKNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +++ ++I  GD+ +NL+ + V+V G ++ L GKE+ ++  L+  KN  +T++   + ++
Sbjct: 124 VYSEDNMIAVGDVMINLENRGVQVHGQQVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  + ++++++  LR+KL  A G  + I+T+   G++L  N
Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNDLIKTLRNIGFILEVN 227


>gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1]
 gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
 gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
          Length = 241

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/236 (36%), Positives = 138/236 (58%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E ++  V   G  G++L     +DAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++R    
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 118 --RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             R+ G A   Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE
Sbjct: 182 QLLKKIWGSDSKIETNVVEVYVRYLRNKI-DVPGRSSYIKTVRGTGYMVRTDELDE 236


>gi|170731404|ref|YP_001763351.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169814646|gb|ACA89229.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DEP    ID++I +LRK L   AG    I T+ G GY+LR  + ++
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILRTKSAND 225


>gi|296534444|ref|ZP_06896881.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC
           49957]
 gi|296265229|gb|EFH11417.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC
           49957]
          Length = 258

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 113/184 (61%), Gaps = 1/184 (0%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           +D ++LD+    +  F  LR +R   +  PV I++   S+ED+   L  GADD + +P  
Sbjct: 45  YDVVVLDVADARLQAFAALREIRRRGLRMPVVIITNPISVEDEQTALNIGADDVLLRPVR 104

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
              L+AR++AI+RR  GH  S +  G++ ++   +TV V G  + +T +E+ ++E+L LR
Sbjct: 105 APVLIARMQAILRRGLGHTSSQLTCGNVVLDQARRTVSVDGRHVRITCREFDVLEMLMLR 164

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   LTKE F++  Y   D P+ +I+DVF+CKLR+KL+ AAG    + T+WGRGYVL E 
Sbjct: 165 RGVLLTKEQFMSRAYGVEDGPDQRILDVFVCKLRRKLA-AAGSAEIVRTIWGRGYVLEEP 223

Query: 225 AKDE 228
           +  E
Sbjct: 224 SMAE 227


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL D+ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +A  ++L L  E +N+ V   G DG+      ++D IILDL L ++ G E+
Sbjct: 4   ILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSGIEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR  KI+TP+ +L+  S + DKV GL  GADDY++KPF  EEL+ARIR I+ R    
Sbjct: 64  CRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQVVI 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++I  G ++++ +  T   +   I LT KE++++E L + KN  LT+E  +++
Sbjct: 124 SETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQIVSN 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    E E  + DV+I  LR K+       +YI TV G GY  +++ ++
Sbjct: 184 VWGYDYESETNVTDVYIRYLRSKIDQKYDT-HYIRTVRGIGYQFKDDEEE 232


>gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 238

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L+  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DTPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 222

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED  ALA  +  ML+   + V     G D +       FD +ILDLGL  + G 
Sbjct: 1   MRILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDPFDLVILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   RV   + PV IL+   S  +++ GLQSGADDY++KPF+ +EL+ R++A++RR+ 
Sbjct: 61  QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  S +  G  +++ +  +V      I LTG E++M+       +  L+K    +HLY
Sbjct: 121 GRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLASHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +++V + +LR+KL     GK  IET  G+GYV    A+
Sbjct: 181 DNESDRDSNVLEVHVNRLRRKL-----GKTVIETRRGQGYVFTGKAQ 222


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G++     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L  ++++ L++E + V V   G D + L      D ++LDLGL DI G +
Sbjct: 3   RILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEGAD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R A    P+ +LS      DKV  L +GADDY++KPF  +EL+AR+RA+ RRS  
Sbjct: 63  VIRGIR-AWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERRS-A 120

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H  +   +I TG+L ++L A TV   G R+HLT +E+ +++LL   +   +T+   L  +
Sbjct: 121 HTPAGVAVIQTGNLLIDLGAATVTRNGKRVHLTPREWDVLQLLVTNRGKLITQRQLLQTV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + E + + V++ +LR+KL        ++ T  G+GY   E 
Sbjct: 181 WGPAYQEETQYLRVYMAQLRRKLETDPAHPKHLITAAGQGYRFDET 226


>gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK+  F  + T  G + +EL     FD IILD+GL DI GFEV
Sbjct: 4   ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR   ++ PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R     
Sbjct: 64  LQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEAAG 123

Query: 123 AQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A  + +T  D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 124 ADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +++V++  LR KL     G++ +ETV G GY L
Sbjct: 184 DFDPGSNVVEVYVSYLRNKL-----GRDRVETVRGMGYRL 218


>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
 gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
          Length = 231

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 129/227 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+ AL + I   L+  N++V +   GE+ +E  + Y++D I+LDL L  I G 
Sbjct: 1   MKLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + ILS  + IED ++GL  GA+DY+ KPF+  EL ARIR+++RRS 
Sbjct: 61  EVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GD+ VN   K   +   +  LT KEY ++E L   KN  ++ E  + H++D
Sbjct: 121 IQNDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     +   I  L+KK+   +    +I+ + G+GY++ E+  D
Sbjct: 181 SEVDSFSNSLKYHIYSLKKKIRAVSANDEFIKNIRGQGYIISESKVD 227


>gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 221

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +A  I+  L+ ENF V +   GE+G+ + +   +D I++D+ L    G 
Sbjct: 1   MKILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  +++TPV  L+   S+ED V GL SG+DDY++KPF   EL+AR++A+VRR  
Sbjct: 61  TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V      I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I T+ G GYVL+E+
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DKDYSKKLIHTIRGVGYVLKED 223


>gi|308049852|ref|YP_003913418.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632042|gb|ADN76344.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 126/219 (57%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  L H +++ L      V  +    +G  L   Y  D  ++DLGL D  G 
Sbjct: 1   MQILVIEDDPLLCHHLKVRLSELGNQVQASQTASEGEYLANNYPLDIAVVDLGLPDESGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    + P+ IL+   S +DKV GL +GADDY+ KPF  EEL+AR+ A+VRRS 
Sbjct: 61  SLIQRLRDQGKAFPILILTARDSWQDKVEGLNAGADDYLVKPFRIEELMARLNALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G L ++L  K+V + G  + LT  EYQ++E L       ++K+  L+ LY+
Sbjct: 121 GFIKPEISCGSLKMDLTGKSVTLAGDLLELTAFEYQILEYLMRHHQQVISKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R E +   ++V I +LRKKL  + G  N I T+ G+GY
Sbjct: 181 DR-EGDPNTVEVMISRLRKKLV-SGGMNNPIVTIRGQGY 217


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VFI +LRKK+ N     + IETV G GY ++
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217


>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ +++++LK  N++V     G+D  +      +D +ILD+ +  + GF
Sbjct: 1   MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVYDGVILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R      PV +L+  +  +DK+ GL  GADDY++KPF  +EL+ARIRAI RR  
Sbjct: 61  TVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GD ++N     +   G  + L  KEYQ++ELL   +N  ++ E+ +  ++ 
Sbjct: 121 EAVSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E+ ++ V I  LRKKLS    G + I+ V  +GY+L    +D T
Sbjct: 181 YDTDTEISVVWVNISYLRKKLSQIGSGVS-IKAVRNQGYILEYKEEDRT 228


>gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 230

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   +    +       GE+G  L +   +DAIILDLGL  I G 
Sbjct: 1   MRILVVEDDVDLSRQLVAAMTDAGYAADAAFDGEEGAWLGETEPYDAIILDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R A I TPV IL+      +KV G+ +GADDY++KPF  EE++ARIRA++RRS 
Sbjct: 61  SILERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++ +  GDL ++     V  +G  + LTG E++++  L   ++  +++   ++HLY 
Sbjct: 121 GVAKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   I+VFI +LR+K+       + I TV G GY L
Sbjct: 181 QDFERDSNTIEVFIGRLRRKIP-----ADIIHTVRGLGYCL 216


>gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI +PF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220


>gi|86361041|ref|YP_472928.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86285143|gb|ABC94201.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 222

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   L K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKELAAWLGKALRQAQYTIDIAYDGEDAEHLLKVAEYSAMILDLSLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G+L  +   +   V+G  + LT +EY ++E L ++  TT++K      ++ 
Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGTTVSKAALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I++++ +LRKKL  ++     I T+ G GY+LR
Sbjct: 181 FDDEADPSAIEIYVHRLRKKLEASS---VQIATLRGLGYLLR 219


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIPTVRGMGYVIRE 227


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDC-----DVIQTVRGLGYLL 216


>gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIED   L   I   L  E   + V   G  G+E+   Y+FD I+LD+ L  + G +
Sbjct: 5   KVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R       + +L+ + S E+ V GL+SGADDY+ KPF  EELVAR+R ++RRS  
Sbjct: 65  VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSK 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     I   DL +N+ +KTV   G  ++LT  EY+++E L    N  L++   L +++
Sbjct: 125 QAAVTDRISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D        ++DV+I  LRKK+ N  GG+  I TV+G GY+L+E
Sbjct: 185 DIDFNLGTNVVDVYINYLRKKIDNVNGGR-LIHTVFGMGYILKE 227


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDC-----DVIQTVRGLGYLL 216


>gi|126174714|ref|YP_001050863.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153001013|ref|YP_001366694.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875726|ref|YP_001555042.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|125997919|gb|ABN61994.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151365631|gb|ABS08631.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160861248|gb|ABX49782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
          Length = 227

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 4   MRILVVEDDPILSHHLKVQLSDLGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR A +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 64  SLIEQLREAGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 124 GFVKPVICSGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 220


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 223

 Score =  147 bits (370), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   L   +F V   D G +G+ L    EFD I+LD+ L  I GF
Sbjct: 1   MRILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  K  TPV +L+   ++ DKV GL+ GADDY+SKPF   E +ARIR+++RR+ 
Sbjct: 61  ELLRRLRKEK-QTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++   D+ V+   + V+    RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RAVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  + +LR K+ N+   K  + TV G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAVKRLRAKIDNSFETK-LLHTVRGMGYVLEDRS 223


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K+LA  +EL L+ E +   V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   D+ +  + + V+     I+LT +EY+++ LL    N   ++E  L
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++   D  E  ++DV+I  LR K+ + AG  +YI+TV G GYV+R
Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++  ML S+ + V + + G+ G E  +   +D ++LD+ L  + G 
Sbjct: 1   MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR      P+ +L+  ++ +DKV+GL +GADDY+ KP +  EL ARIRA++RRS 
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    + ++     V   G  + LT KEY ++ELL   +  T + +  L+ L+ 
Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    +   I  LR+KL  A  G  +IETV+G GY L +N
Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 2/124 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +  +I+ +L+         D      +  +    D ++LD+ +  + G E
Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  ++  +  + + +  Q+GADDY++KPF   EL  RI   ++R+
Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616

Query: 120 RGHA 123
           +  A
Sbjct: 617 QNLA 620


>gi|221201787|ref|ZP_03574824.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
 gi|221207708|ref|ZP_03580716.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221214547|ref|ZP_03587517.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221165437|gb|EED97913.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221172554|gb|EEE04993.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221178207|gb|EEE10617.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLMLRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             DEP    ID++I +LRK L   A     I T+ G GY+LR  A
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AASSAEIITLRGLGYILRAKA 222


>gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 226

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 127/220 (57%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  E         G  G       E DA+ILD+ L ++ GF
Sbjct: 1   MKVLLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV +LS  S +EDKV+GL++GA+DY++KPF  EEL+AR+  +  R++
Sbjct: 61  SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++LI  GDL+++L  + V      I L  KE+Q++E L   K   +T+ M L  ++
Sbjct: 121 DGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +P+  +IDV I +LR+K+  A      IETV G GY
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219


>gi|59711133|ref|YP_203909.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Vibrio fischeri ES114]
 gi|59479234|gb|AAW85021.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Vibrio fischeri ES114]
          Length = 226

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 130/227 (57%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+I L+ED++ L H +   LK +   VY        ++  +  E  D +I+DLGL D  G
Sbjct: 1   MQIALVEDNEILNHHLSSQLKDQGHVVYSDKTASAFLQTVQKKEHIDVMIVDLGLPDFDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ +R  +I +P+ IL+   + +DKV GL++GADDY+ KPF  EEL+AR+ A+ RR+
Sbjct: 61  ITLIKQIRRKEIHSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  QS +   ++ +++ AKT+ V G  + LT  EY +   L       ++K+ F++ LY
Sbjct: 121 AGFTQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E ++  I+V I +LRKK + A G    I TV G+GY  +  AK
Sbjct: 181 QEDSEVQLNNIEVIISRLRKKFA-AVGHNELITTVRGQGYQFQIKAK 226


>gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           Pseudomonadales bacterium HF0500_12O04]
          Length = 222

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L    + +     G D +   +   +D IILDLGL  I G 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRSGYALDWLADGRDALYQGQSEPYDLIILDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+  SS  +++ GL++GADDY++KPF+ EEL+ R++A++RRS 
Sbjct: 61  EVLKQWRAQGLATPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q L+    L ++   + V   G ++ LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPLLKCAGLHLDEARQCVINDGAQVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+ 
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIF 217


>gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 218

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   + + L+   F V     G    +  +   FD ++LDLGL  + G 
Sbjct: 1   MRILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPRLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R      P+ IL+   +  DKV GL +GADDY+ KP + +EL ARIRA+ RRS 
Sbjct: 61  EVLNRARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G+LS++L A  V + G  I L+ +E+ ++++L       LT+      LY 
Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DEP+   ++V I  LRKKL     G   I T+ G GY +
Sbjct: 181 WHDEPDSNALEVHIHHLRKKL-----GSELIRTLRGVGYTI 216


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VFI +LRKK+ N     + IETV G GY ++
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217


>gi|330966499|gb|EGH66759.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 220

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSRGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
 gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
          Length = 220

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L SE +         +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I T+ G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGVGYRL 216


>gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD I+LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222


>gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +  H + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V + +LR+KL    G K  I+TV G GY+  E  +
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGERGFKP-IDTVRGLGYLFTERCR 225


>gi|107021602|ref|YP_619929.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116688054|ref|YP_833677.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105891791|gb|ABF74956.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116646143|gb|ABK06784.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 225

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L   AG    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219


>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 225

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE +  +I+V + +LR+KL   AG K  I+TV G GY+  E  +
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEAPAGFKP-IDTVRGLGYLFNERCQ 225


>gi|206561833|ref|YP_002232598.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198037875|emb|CAR53819.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L   AG    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 136/225 (60%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L   I+ +L  E + V V+  G  G+E      +D IILD+ L +I G+ 
Sbjct: 3   KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  KI TPV ++S    I+D+++GL SGADDY+SKPF+  EL+AR++AI+RR+  
Sbjct: 63  ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I   +L ++L+ + V +    + LT KEY +IE L   +N  ++K   + +++  
Sbjct: 123 QYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGD 182

Query: 182 RDEP--EVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLR 222
             +P      +DV I  +RKK+    G K Y  I+TV G GY+L+
Sbjct: 183 EFDPFSMSNFLDVHIKNIRKKI----GDKEYKIIQTVRGIGYLLK 223


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 133/223 (59%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+  +   I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|167624453|ref|YP_001674747.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354475|gb|ABZ77088.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 224

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/219 (39%), Positives = 129/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR   +  PV IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQSLRDDGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + LI +G L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPLISSGALELDLAAKQVTLNELPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G +N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-GGIENPIITIRGQGY 217


>gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 135/227 (59%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+L++ED+  L + ++  L  E+++V   D   DG+E   + +   +D IILD+ L   
Sbjct: 1   MRLLIVEDENDLRNIVKKRLVKEHYSV---DACGDGLEAMAYIDMTSYDGIILDIMLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E+LR LR  +  TPV +L+   SIED+VRGL  GADDY+ KPF  EEL+ARIR ++R
Sbjct: 58  DGYEILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      + +   DL ++ D + V   G+ I L+ KE+ ++E L   KN  +T++    +
Sbjct: 118 RKPQFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQN 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +D   E    +IDV+I  LRKK+ +A   +  I TV G GYV+REN
Sbjct: 178 AWDFDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 223


>gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ E +   V + G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    Q ++   DL++    + V      I LT +EY ++  L   KN  +++E
Sbjct: 122 EKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++      E  +++V++  LR K+ +A    +YI+TV G GY++RE+
Sbjct: 182 QLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232


>gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10]
 gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLEDALNQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTTLTK 171
              A  + V     V     T+E     +H        LT +EY ++  L   KN  +++
Sbjct: 122 EKDASRVTVAKQKIVKFKNLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGIGYMVRDEDDDQ 237


>gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 234

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 131/220 (59%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+ + A  I  +L+ E F V   + G+ G+       +D I+LD  L DI G ++
Sbjct: 6   ILLIEDEASNADIISSVLRKEGFAVTWAETGQKGLAAAGMTPYDLIVLDRMLPDISGMDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR A + TP+ +LS +S  E++  GL+ GADDY+ KPF   EL ARIRA++RRSR  
Sbjct: 66  ITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRRSRNQ 125

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S +++ GD+ +++ ++T   QG  + L+ KE+++++LL       +T++M L  ++  
Sbjct: 126 VHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEVWHL 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P+  +IDV + +LR +L +       +ETV G G+ L
Sbjct: 186 NFDPQTNVIDVNMSRLRHRLEDDF-ATPCLETVRGAGFRL 224


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 136/224 (60%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L  E ++V V   G + +++ +  + D +ILD+ +  + GF
Sbjct: 11  VRVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGF 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +LR LR  +   PV +L+   ++ED+V+GLQ G+DDY++KPF+  ELVAR+ AI+RRS 
Sbjct: 71  TLLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSG 130

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G  A + IV GDL ++ DA  V   GH I LT  E++++  L L  N  ++K   L+H+
Sbjct: 131 QGTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I++ +I  LRKKL     G   I+TV G GY LR
Sbjct: 191 WQYDFGGDANIVETYISYLRKKLDGY--GPPMIKTVRGVGYSLR 232


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|167624938|ref|YP_001675232.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354960|gb|ABZ77573.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/200 (40%), Positives = 118/200 (59%), Gaps = 5/200 (2%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           N+ V   D GE G+     Y +DA I+D+GL  + G  +++ LR   I  P+ IL+   S
Sbjct: 24  NYTVDTADDGEIGLFQGSEYNYDAAIIDVGLPKLDGIALIKELRSLDIGFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ EELVAR++A++RRS G A  +I  G  S+N  +  +  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPIITNGPFSLNTSSLEITK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL-- 201
            G  I L+G EY++ E L L      +K +   H+YD   + +  +I+VFI +LRKKL  
Sbjct: 144 SGETITLSGSEYKLFEYLMLHIGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKLDP 203

Query: 202 SNAAGGKNYIETVWGRGYVL 221
            N  G    IET+ G+GY L
Sbjct: 204 DNQLG---LIETLRGQGYRL 220


>gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 128/220 (58%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   +   L+   + V     G++G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV+G  +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  SVLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  A  V V G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   ++VF+ +LRKKL     G + I+TV G GY+
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GVDVIQTVRGLGYM 215


>gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 220

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  I LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD ++LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDREA-DKKLIHTVRGVGYILKE 222


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  I   L+ E F V     G++ + +     +DA +LD+ L    G 
Sbjct: 46  MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR   IS P+ +LS  S   DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ 
Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G+L++NL  + V     +I LT KE+ ++ELL        T+      +++
Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++DV+I KLRKK+      K  I+TV G GY
Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQK-LIQTVRGVGY 263


>gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630]
 gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +   +   L SEN++V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E
Sbjct: 180 YNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEE 228


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ + + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
 gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
          Length = 223

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  +   ++L L    F+V + TD G+ G++      +DA++LDL L  + G
Sbjct: 1   MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTD-GKTGLDALSSAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL++ R A    PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LEVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH   +I    +  + + + V ++   + LT +EY ++EL    K+  LT+      LY
Sbjct: 120 YGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              DE     ++V I  LR+KL     GK +I TV G GY L +N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+L+L L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   +   LK+E+++V     G++ ++  +   +DA++LD+ +  + G 
Sbjct: 1   MRILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R     TPV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++R+ +
Sbjct: 61  SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q++    DL V+LD   V   GH I L+GKE+ ++  L       L+++    HL++
Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +IDV+I  LRKK+   +  K  I TV G GYV+R
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDEGSQTK-LIHTVRGAGYVMR 221


>gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 220

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNNEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG+ + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+L+L L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|221197319|ref|ZP_03570366.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221203992|ref|ZP_03577010.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221176158|gb|EEE08587.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221183873|gb|EEE16273.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 221

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRKKLH---GSSVEIRTARGMGY 216


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  G DDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ RIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V V   G  G++L    E+D +++D  +  I G 
Sbjct: 1   MRLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+  L+   +IED V GL +GA+DYI KPF  EEL+ARIR  +RR R
Sbjct: 61  EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR-R 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S + TG+L+V+  +     +   + LT KE+ ++E L   K    T+   + H++D
Sbjct: 120 GSESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +IDV+I  LRKKL +AAG ++ I+T+ G GY++R+  
Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DAAGCRDLIQTIRGVGYIIRDEG 223


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 132/226 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L+  +   LK   + V     GE+ +EL +  E+D IILDL L  + G 
Sbjct: 1   MKLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +RV      + ILS  S+I DK+ GL  GA+DY+ KPF+ +EL ARIR ++RR+ 
Sbjct: 61  EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    ++++   K V V G  I +T KEY ++E L L++N  ++ E  + H++D
Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     +   I  LRKK+++  G K  I+TV G+GY++ E+ K
Sbjct: 181 SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMITESDK 226


>gi|206563234|ref|YP_002233997.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039274|emb|CAR55239.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 226

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + K+     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +      I++++ +LRKKL N       I T+ G GY+L   AK ET E
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLL--EAKAETAE 226


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ LA  +EL L+ E +  +V D G  G++     +FD I+LDL L ++ G EV
Sbjct: 4   VLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K +TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 64  ARRLREEK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIDIE 122

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  H+  QS++   DL+V  + +        I+LT +EY+++ +L    N   ++E  L 
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREELLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++DV+I  LR K+       +YI+TV G GYV+R+
Sbjct: 183 KVWGYDSEIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229


>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  +   ++L L    F+V + TD G+ G++      +DA++LDL L  + G
Sbjct: 1   MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTD-GKTGLDALSSAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL++ R A    PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LEVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH   +I    +  + + + V ++   + LT +EY ++EL    K+  LT+      LY
Sbjct: 120 YGHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              DE     ++V I  LR+KL     GK +I TV G GY L +N
Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKN 219


>gi|171316878|ref|ZP_02906087.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171097959|gb|EDT42777.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRSDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCSDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227
             D+P    ID++I +LRK L    G    I T+ G GY+LR ++A+D
Sbjct: 181 LDDDPSADAIDIYIHRLRKHL---VGSTAEIITLRGLGYILRAKSAQD 225


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   + L + +  DA++LD+ L D+ G 
Sbjct: 159 VRVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGL 218

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 219 EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 278

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++L    +V GDL+++ +++ V+  G  +HLT  E++++          L+K   L+
Sbjct: 279 RTTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILD 338

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +  ++++++  LRKK+   AG    I T+ G GYVLR 
Sbjct: 339 RVWNYDFGGQANVVELYVSYLRKKID--AGRPPMIHTMRGAGYVLRP 383


>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL SGADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177
           G A+ LI      + LD  T +V  H   + LT KEYQ++ ELLS      +T+E  +  
Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY   +E E   ++V I  LRKK S+       I T+ G GY++ E +
Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGGGYLVEERS 220


>gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 271

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E +     + GED +     +  D ++LDL L D+ GF
Sbjct: 46  VRLLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLMLPDVDGF 105

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 106 GVLDRLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 165

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +S++  GDL+++ D + V   G  + LT  EY+++  L  R  T LTK   L+H+
Sbjct: 166 GPGFQRSVLRVGDLTMDEDTREVRRGGRTLSLTPTEYEVLRYLMRRSPTVLTKAQILDHV 225

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        ++++ + +LR+KL +   G+  I+TV G GYV+R+ A+
Sbjct: 226 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIQTVRGFGYVIRQAAE 271


>gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
 gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
          Length = 219

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+S     +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQIMETLESTG---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae
           T7901]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+ A+   +     S+NF +     GE+G      Y++D  ++DLGL  + G 
Sbjct: 1   MKMLIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR A    PV IL+     +DKV GL++GADDY+ KPF+ EEL AR  A++RR+ 
Sbjct: 61  EIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G ++++   K V V    I LT  EY  +E L+L     ++K     HLY 
Sbjct: 121 GSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +  +I+VFI +LRKKL      K  I T+ G+GY
Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPDNQLKP-ISTIRGQGY 218


>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 220

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D  +LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GADLIRNVRGLGYMIAKDA 220


>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA +++ +LK   + V V   GE G +L     +D  ILD+ L  + G 
Sbjct: 1   MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LRA+R A + TPV +L+   ++ED+V GL +GADDY+ KPF+ +EL+AR+RA+ RR+ 
Sbjct: 61  DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    I  G   ++L+ +TV   G  + LT KE+Q++EL     N  L+KE+ L+ ++
Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +     ++ ++  LRKK+ +     +YI TV G GY+   + 
Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPDP 225


>gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 221

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216


>gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2]
 gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1]
 gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
 gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E  +
Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225


>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 220

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/228 (41%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL SGADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177
           G A+ LI      + LD  T +V  H   + LT KEYQ++ ELLS      +T+E  +  
Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY   +E E   ++V I  LRKK S+       I T+ G GY++ E +
Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGVGYLVEERS 220


>gi|254489830|ref|ZP_05103025.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224464915|gb|EEF81169.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD +LA  ++  LK E F V    LG   IE       D ++LDLGL D+ G 
Sbjct: 1   MQVLLIEDDPSLAQGLKTSLKREGFIVNHLQLGRLAIESVATAAPDMVVLDLGLPDMDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R      PV IL+  SS++DKV GL  GADDY++KPF+ +EL+AR+R   RR  
Sbjct: 61  DVLRAIRKINAELPVLILTARSSLQDKVDGLDGGADDYLAKPFDTDELLARLRVFERRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V G+++++  A+ V+V G  + L+ +EY +++ L        T++     LY 
Sbjct: 121 SLKHAELVVGNVAMDTKAQQVKVNGADLELSRREYMLLKTLMENVGRVQTRDSLETKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE     I+V I  LRKKL      + +I TV G GY ++
Sbjct: 181 WGDEIASNAIEVHIHHLRKKLP-----EQFIRTVRGVGYTIK 217


>gi|186472785|ref|YP_001860127.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195117|gb|ACC73081.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 237

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  L+H +  ML+ + F +     GE   +L     +D ++LDL L  + G 
Sbjct: 13  MKLLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGK 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    +TPV IL+   SI++KV  L +GADDY+ KPF   EL+AR++ ++RR  
Sbjct: 73  NVLRRLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL+ ++D +   ++G  +++T +E  ++E L LR   T++K   ++ ++ 
Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+P    +++++ +LRKKL    G    I T+ G GY+LR+
Sbjct: 193 HDDQPSEDALEIYVSRLRKKLD---GSSAAIVTLRGLGYLLRK 232


>gi|241113399|ref|YP_002973234.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861607|gb|ACS59273.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 222

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   L K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHLLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G+L  +   +   V G  + LT +EY ++E L ++   T++K      ++ 
Sbjct: 121 DRASSEITVGNLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKHGITVSKAALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I++++ +LRKKL +++     I T+ G GY+LR
Sbjct: 181 FDDEADASAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FDA++LDLGL  + G 
Sbjct: 1   MRLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I    + ++   + V   G  + LT KEYQ++  L       +T++  +  LY 
Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK S+       I TV G GY++ E
Sbjct: 181 WNEEAESNTLEVHIHHLRKKFSS-----ELIRTVRGVGYLVEE 218


>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +A  I + LK+E F V     G+ G+++     +D +I+DL L +I G 
Sbjct: 1   MRILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R +R      P+ +L+   ++ DKV   +SGADDY++KPF   EL+ RI+A++RR  
Sbjct: 61  ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   DL ++  A  V   G  I LT KEY ++E L+      L++ M + H++D
Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV++ +LR K+      K  I TV   GYV+ EN 
Sbjct: 181 QSFEGLTNIVDVYVRQLRAKIDEPFDRK-LIHTVRSVGYVINENG 224


>gi|161523212|ref|YP_001578224.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348931|ref|YP_001944559.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160340641|gb|ABX13727.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189332953|dbj|BAG42023.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
          Length = 225

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             DEP    ID++I +LRK L   A     I T+ G GY+LR  A
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AASSAEIITLRGLGYILRAKA 222


>gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11]
 gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11]
          Length = 218

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+S +   +V +L +DG++        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDLRLGEQIVETLESAD---WVPELSQDGVDALYRATTEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+++R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  NGLTVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++  +  V  Q   + LT  EY+++       +  +++   + H
Sbjct: 118 RASGNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   ++VFI ++RKK++      N I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|254246631|ref|ZP_04939952.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124871407|gb|EAY63123.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L   AG    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219


>gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae
           LMA3894-4]
          Length = 219

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+      +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDVQLGQQILSALEQTG---WVPELAQDGIDALYRATAEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY++I          +++   + H
Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++RKK++      + I+TV G GY L  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQLHAN 219


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +  S+E  L+   F V     G D + +      DA++LD+ +  + G  
Sbjct: 6   KILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR A    P+C+LS  +S++D++ GL+SGADDY+ KPF   ELVARIRA++RRS  
Sbjct: 66  VVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNT 125

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A       + +  G+L ++L  + V V G  + LT +E++++E+L+      LT+E  L
Sbjct: 126 PAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +  ++DVFI  LR+K   + G    + TV G G+VLREN 
Sbjct: 186 ELVWGYDFVADTNVVDVFIGYLRRKFE-SGGSPRLLHTVRGVGFVLRENP 234


>gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L+   + V     GE+G  L     +D ++LDLGL    G 
Sbjct: 1   MRLLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGLPGKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV+G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+   G +S +     V V+G  + LT  EY+++  L   +   +++   + HLYD
Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VF+ +LRKKL     G + I T+ G GY+L     D+  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDVIHTMRGLGYILAPPTADDGA 225


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 133/224 (59%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E+     +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H  SL    DL + ++++T+      I LT KE++++ +     N  LT+++ LN +
Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 221

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216


>gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEMFDLVILDLGLPRLGGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EPE   ++V I  LRKKL N       I TV G GY++
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLV 216


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 137/228 (60%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     G++  EL    ++D I+LD+ L ++ GFE
Sbjct: 4   KVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR++G
Sbjct: 64  VCQMIR-EKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKG 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A+  IV+G++ ++LD++ V +    ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 RKQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P +V+ +DV + +LR+K+  +     YI T WG GY  ++
Sbjct: 183 LVW-GYDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFFQK 229


>gi|289648792|ref|ZP_06480135.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. aesculi str. 2250]
          Length = 220

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEDAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V I +LR+KL    G K  I+TV G GY+  E  +
Sbjct: 181 GDEERDPNVIEVLIGRLRRKLEGEQGFKP-IDTVRGLGYLFTERCR 225


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|221067645|ref|ZP_03543750.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220712668|gb|EED68036.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 221

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED + LA ++   L+SE    Y  D   DG+   KF   Y +DAIILDL L  +
Sbjct: 1   MRVLIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VLRAL     + PV +LS    ++D+VR L +GADDY++KPF   EL+AR+RA+VR
Sbjct: 58  DGFGVLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++  GDL V+  ++    +   + LT KEY +++LL  R+  TL++     H
Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSRSQIFEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LYD R +   K+++V +  LR KL+   G    I T  G GY+L
Sbjct: 178 LYDSRSDASDKVVEVIVSTLRTKLA-LCGLDELIVTRRGFGYIL 220


>gi|160877446|ref|YP_001556762.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217975283|ref|YP_002360034.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304412081|ref|ZP_07393691.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305976|ref|ZP_07585722.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|160862968|gb|ABX51502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500418|gb|ACK48611.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349631|gb|EFM14039.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911469|gb|EFN41895.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269648|gb|ADT96501.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 231

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 1/208 (0%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           ++++ V   GE+G+     Y +DA I+D+GL  + G  ++R++R  +   P+ IL+   S
Sbjct: 24  HYSIDVASDGEEGLFQALEYNYDAAIIDVGLPKLDGIALIRSVREQERDFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A  LI  G  S+N  +  V  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLIYNGPFSLNTSSLEVRK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
               ++L+G EY++ E   L +    +K +   H+YD   + +  +I+VFI +LRKKL +
Sbjct: 144 GEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202

Query: 204 AAGGKNYIETVWGRGYVLRENAKDETCE 231
                N IET+ G+GY L+    + T +
Sbjct: 203 PDNQYNLIETLRGQGYRLKALTPEPTAD 230


>gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct]
          Length = 226

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E  +
Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI R    
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI R    
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 225

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E  ++   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K  F  H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
 gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
          Length = 242

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L + ++  L  E+++V     G + ++      +D IILD+ L    G+
Sbjct: 19  MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIMLPGKDGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  +  TPV +L+   SIED+V+GL  GADDY+ KPF  EEL+ARIR ++RR  
Sbjct: 79  EILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ D + V   G+ I L+ KE+ ++E L   KN  +T++    + +D
Sbjct: 139 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +A   +  I TV G GYV+REN
Sbjct: 199 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 241


>gi|296282536|ref|ZP_06860534.1| transcriptional activator protein copR [Citromicrobium
           bathyomarinum JL354]
          Length = 227

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL +EDD   A  +E +++ E   + V   G DG++      FD I++D  L D  G 
Sbjct: 1   MKILYVEDDPRAAREMEDIVRREGDTIAVETNGADGLKRAGLESFDVIVMDRMLGDADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR + ISTP+ +LS +    ++  GL++GADDY++KPF   ELVAR+RA+ RR+ 
Sbjct: 61  DIIRRLRGSAISTPILMLSALGRTSERAEGLEAGADDYLAKPFEAIELVARVRALHRRAS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S +I+ G    ++ A+T       I L+ +E+++           +T+EM L  ++
Sbjct: 121 GREHSAVILFGAFECHVKARTAFRDNRHIPLSPREFELFRYFMENAGEVVTREMLLRDVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  ++DV I +LR+KL         +ETVWG GY L
Sbjct: 181 NMSFDPQTNVVDVNIGRLRRKLEEGFDSP-ALETVWGTGYRL 221


>gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ E +   V + G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    Q ++   DL++    + V      I LT +EY ++  L   KN  +++E
Sbjct: 122 EKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++      E  +++V++  LR K+ +A    +YI+TV G GY++RE+
Sbjct: 182 QLLNKIWGPDSNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I+  L+ E + V     GE+G+++     FD +ILD  L  + G 
Sbjct: 1   MRILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ L+  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKE 222


>gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 221

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216


>gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 225

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + + FD  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V + +LR+KL  A G K  I+TV G GY+  E  +
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGARGFKP-IDTVRGLGYLFTERCR 225


>gi|170703189|ref|ZP_02893997.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|172062527|ref|YP_001810178.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170131903|gb|EDT00423.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171995044|gb|ACB65962.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216


>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL   ADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 7   LRILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 67  SVVERWRRSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G L ++       + G  + LT  EY+++  L    +  +++   + HLYD
Sbjct: 127 GHASSELVCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R     ET
Sbjct: 187 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRIRSEGGGET 230


>gi|229589618|ref|YP_002871737.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361484|emb|CAY48360.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 222

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++ PV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLAQWRAAALAIPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQTNQPTLQAAGLHLDEGRQCVLRDGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           DG  E +  +++V +  LR+KL     G++ IET  G+GY    N
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYRFGAN 220


>gi|319944417|ref|ZP_08018691.1| transcriptional regulator FeuP [Lautropia mirabilis ATCC 51599]
 gi|319742378|gb|EFV94791.1| transcriptional regulator FeuP [Lautropia mirabilis ATCC 51599]
          Length = 237

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+L++EDD+ LA S+++ L+       V +L  DG E   L     +DA +LDLGL ++
Sbjct: 1   MRVLIVEDDRELAQSLKVALEESGM---VAELAVDGQEASFLGSTERYDAAVLDLGLPEL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+  R    + PV IL+G     DK+ G  +GADDY++KPF  EE+V R+RA+VR
Sbjct: 58  DGISVLKQWREQGCNFPVLILTGRGRWSDKLAGFGAGADDYLTKPFMHEEVVVRLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  ++  G LS +       ++G R+  T +E +++  L  +    L++   + H
Sbjct: 118 RAYGHADPVLQVGPLSYDTLQGRFSMEGRRLAFTAQEERILAYLMHQPGVVLSRTDIVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    +P+   +DV I ++R+KL     G + I TV GRG+VL
Sbjct: 178 VYARDSDPDSNALDVLIGRIRRKL-----GVSMIRTVRGRGFVL 216


>gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 218

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+K LA  +   L+   F   VTDL  DG E   L +   +DAIILDLGL   
Sbjct: 1   MRILIVEDEKTLAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR++A+VR
Sbjct: 58  DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H
Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +Y    + +   ++VFI ++RKK        + IETV G GY + E
Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTH-----ADLIETVRGLGYRINE 218


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L+ 
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K ++  I+  L+ E + V     GE+G+++     +D I+LD+ L    G 
Sbjct: 1   MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR  K STPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA+VRRS 
Sbjct: 61  SVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   +  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRES-DKKLIHTVRGVGYILKE 222


>gi|153002710|ref|YP_001368391.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151367328|gb|ABS10328.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 231

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/208 (36%), Positives = 125/208 (60%), Gaps = 1/208 (0%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           ++++ V   GE+G+     Y +DA I+D+GL  + G  ++R++R  +   P+ IL+   S
Sbjct: 24  HYSIDVASDGEEGLFQALEYNYDAAIIDVGLPKLNGIALIRSVREQERDFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A  LI  G  S+N  +  V  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLIYNGPFSLNTSSLEVRK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
               ++L+G EY++ E   L +    +K +   H+YD   + +  +I+VFI +LRKKL +
Sbjct: 144 GEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202

Query: 204 AAGGKNYIETVWGRGYVLRENAKDETCE 231
                N IET+ G+GY L+    + T +
Sbjct: 203 PDNQYNLIETLRGQGYRLKALTPEPTAD 230


>gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 220

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ I +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL       + I+TV G GY+L   A 
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPAN 221


>gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
 gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
          Length = 219

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD+ +   I+  L    F V + TD G+ G+       +DA+ILDL L  I G
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTVDWFTD-GQQGMTALDSAPYDAVILDLSLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+
Sbjct: 60  LEILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY
Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              DE     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 180 SWDDEVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 219

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +             L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|59712003|ref|YP_204779.1| DNA-binding response regulator [Vibrio fischeri ES114]
 gi|59480104|gb|AAW85891.1| DNA-binding response regulator [Vibrio fischeri ES114]
          Length = 218

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+S +   +V +L +DG++        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDLRLGAQIVETLESAD---WVPELSQDGVDALYRATTEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+++R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  NGLTVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++  +  V  Q   + LT  EY+++       +  +++   + H
Sbjct: 118 RASGNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   ++VFI ++RKK++      N I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216


>gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 222

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV +L+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLQEWRAGGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K    +HLY
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V + +LR KL     G+N IET  G+GY
Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGY 215


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ LI    +S+N   + V   G  + LT KEYQ++  L       +T++     LY 
Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK S      + I T+ G GY++ E
Sbjct: 181 WNEEAESNTLEVHIHHLRKKFST-----DLIRTIRGVGYLVEE 218


>gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 221

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD+ L+  ++  LK  N    ++  GEDG+   +   +DA+ILD+ L  + G 
Sbjct: 1   MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R   ISTPV +L+  +  +D+V GL SGADDY+ KPF  +EL AR+ A++RR+ 
Sbjct: 61  TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL+++  AK+V+V    I LT +EY ++ELL       ++ E  + H++ 
Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D     +I V I  LR+K+   +GG+  IET+ G+GY L
Sbjct: 181 DNDNQFSNVIRVHIANLRRKIK-CSGGETLIETLKGKGYRL 220


>gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 221

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ RIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARI AI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI  R   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
 gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 135/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L  + F V +   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYIHRALTEQGFTVDIAATGTDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  EL+ARI+A++RR  
Sbjct: 61  RVLKGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPYSLKLLHTVRGMGYVL 221


>gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 218

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+K LA  +   L+   F   VTDL  DG E   L +   +DAIILDLGL   
Sbjct: 1   MRILIVEDEKTLAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR+ A+VR
Sbjct: 58  DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H
Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +Y    + +   ++VFI ++RKK  +     + IETV G GY + E
Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTHS-----DLIETVRGLGYRINE 218


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VCKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 222

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL+SGADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   ++V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +     + FD  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL   AG K  I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPAGFKP-IDTVRGLGYLFNE 222


>gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 229

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  +   L+ + + V +   GE  +       +D +ILD+ L    G+
Sbjct: 1   MRILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR A  S P+ +L+   SI+D+V GL SGADDY+ KPF+ +EL+AR+RA+ RRS 
Sbjct: 61  AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+VN  +  VE  G  I LT KEY ++E L L ++  + +E    H+++
Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    +IDV+I +LR KL +  G    I T  G GY+L   AK E  +
Sbjct: 181 ETFDAFTNVIDVYIKRLRAKL-DGPGSPRLIHTRRGEGYIL--TAKPEAGD 228


>gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 220

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + L L SEN+         +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   IS PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I  G+L +NL ++   +    + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+     ++V +  LR+KL     GK  I TV G GY L
Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKEVIRTVRGIGYRL 216


>gi|91778060|ref|YP_553268.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|187920547|ref|YP_001889579.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|296157989|ref|ZP_06840822.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307726131|ref|YP_003909344.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|91690720|gb|ABE33918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
 gi|187718985|gb|ACD20208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|295891757|gb|EFG71542.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307586656|gb|ADN60053.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 228

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226
              +    +++  I +LR KL      K  + TV G GYVL  RE A+
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226


>gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  I G 
Sbjct: 1   MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKK+     G + IETV G GY +RE
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  +EL L+ E +   V   G  G+EL    ++DAI+LDL L ++ G +
Sbjct: 3   RILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  ICRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G+ Q+ +   DL++  + + V      I LT +EY+++  L    N  L ++  L
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|323529593|ref|YP_004231745.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323386595|gb|ADX58685.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 228

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226
              +    +++  I +LR KL      K  + TV G GYVL  RE A+
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|117920171|ref|YP_869363.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612503|gb|ABK47957.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 4   MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR   +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 64  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIVTIRGQGY 220


>gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25]
 gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25]
          Length = 219

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+S     +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQIIETLESTG---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 223

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD  L  ++E  L            G+ G+E     +FDA++LD+ L D  G 
Sbjct: 1   MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R   I TPV +L+ + S++D+V GL SGADDY+ KPF   EL+AR+ AI RR++
Sbjct: 61  EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G L ++L  + V      + LT  E+ ++E L       +T++M   HL++
Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +++V I +LR K+      +  I+TV GRGYVLR
Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGF-SEPLIQTVRGRGYVLR 221


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  A ++   L +E F   V   G +G+     + +D ++LD+ L ++ G+
Sbjct: 1   MRLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A+  TPV +L+      D+      GADDY+SKPF+   L+AR+RA++RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+TV     RI LT +E+ ++E L  R    L+K   L+H++D
Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V+I  LR+K+ +A  G + IETV G GY L
Sbjct: 181 AHYDGDENVVEVYIGYLRRKI-DAPFGTHTIETVRGVGYRL 220


>gi|113969921|ref|YP_733714.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047157|ref|YP_737707.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884605|gb|ABI38657.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113888599|gb|ABI42650.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 4   MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR   +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 64  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 124 GFVKPVITSGELKLDLAAKQVTLGNEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 183 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIATIRGQGY 220


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  ++L L+   + V     GE+G+   +    D ++LD+ L  + G  
Sbjct: 6   RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A   TPV +L+   +  DKV  L  GADDY++KPF  EEL+AR+RA++RR  G
Sbjct: 66  VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRVEG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + ++  G L+V+  A+ V   G  + LT +EY ++ELL+      L++E  L+ ++  
Sbjct: 126 --EEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  ++DV++  LR+KL     G+  I TV G GYVLRE+
Sbjct: 184 GAGVDPNVVDVYVGYLRRKLEGPGEGR-LIHTVRGVGYVLRED 225


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 135/228 (59%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+        I  G ++++ +       GHR+ LT KE++++   + R   TL+++  
Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++ G D P E +++D+ +  LR K+       +Y++TV G GY +
Sbjct: 183 LNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 229


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G + ++  +    V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL     G + IET+ G GY ++  A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GVDLIETIRGLGYRMQAPA 220


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   LK+  F  + T  G   + L    +FD IILD+GL DI GFE
Sbjct: 3   RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VL+ LR   + TPV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R  + 
Sbjct: 63  VLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +   D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++ 
Sbjct: 123 GPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 135/226 (59%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ + L K  EFD I+LD+ L  + GFE
Sbjct: 4   KILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLTGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR++ 
Sbjct: 64  VCQQVREFS-DVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++LIV G++ ++ +++ V +    ++LT KE+ M+ELL+L +N   ++E  LN 
Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++ G D P + + +DV I +LR+K+ +      Y+ T WG GY  R
Sbjct: 183 VW-GYDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYFR 227


>gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +K   +       GE    L     +DA+ILD+GL+ + G 
Sbjct: 1   MRILIVEDDRDLNHQLAKAIKDAGYVFDSAFNGEYAYFLGSTESYDAVILDIGLSGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++  R    S PV +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS 
Sbjct: 61  QVVKKWRKEGYSMPVLMLTVCDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++     V + G  I LT  E++++  L    +  ++K   + HLYD
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIDGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKKL     G + IETV G GY ++
Sbjct: 181 QDFDKDSNTIEVFVRRLRKKL-----GVDSIETVRGLGYRIK 217


>gi|170748302|ref|YP_001754562.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654824|gb|ACB23879.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 222

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  I   L+   +   V   GE      +   +DA++LDLGL  + G 
Sbjct: 1   MRVLIVEDEPRIAADIRQGLERAGYVADVVADGEAAWFRAETETYDAMVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A+++ PV IL+      ++V G+ +GADDY++KPF  EELVAR+RAI+RR+ 
Sbjct: 61  GVLRRLRAAEVALPVLILTARDGWRERVEGIDAGADDYLAKPFRMEELVARLRAILRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G + ++   + V V G    LT  EY+++  L  R    +     L+HL+ 
Sbjct: 121 GHAAPVLRAGAVELDTRTRAVSVDGRPAELTALEYRLLAFLLHRPGQVVPAGELLDHLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++  + +LR+KL     G   IET  G+GY++
Sbjct: 181 VGTEREANALEALLTRLRRKL-----GPGVIETRRGQGYLI 216


>gi|58038870|ref|YP_190834.1| DNA binding response regulator [Gluconobacter oxydans 621H]
 gi|58001284|gb|AAW60178.1| DNA binding response regulator [Gluconobacter oxydans 621H]
          Length = 251

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++A  +   L +  + V     G +G++     +FD +I+D  L ++ G  
Sbjct: 29  RLLLIEDDDSIAAEVAEELTTRGYEVTRAATGVEGLDHACTGQFDLMIVDRMLPELDGLT 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ++R  +I+ PV +LS +S+++D+V GL++G DDY++KPF  EEL AR+ A++RR   
Sbjct: 89  VIESVRAQRINIPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPTD 148

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  + V   G  I L  +E++++E +  R +T LT+ M L  +++ 
Sbjct: 149 SRVTMLRVGPLEMDLIERRVFRNGQEIDLLPREFRLLEYMMRRPDTVLTRTMLLEDVWNY 208

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ +  G    I ++ G G+ LR
Sbjct: 209 RFVPQTNLVDVHIGKLRRKI-DVPGEPPLIHSIRGAGFSLR 248


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 124/224 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++  ML S+ + V V + G+ G E  +   +D ++LD+ L  + G 
Sbjct: 1   MRILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR      P+ +L+  ++ +DKV+GL +GADDY+ KP +  EL ARIRA++RRS 
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+     + ++     V   G  I +T KEY ++ELL   +  T + +  L+ L+ 
Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    +   I  LR+KL  A  G  +IETV+G GY L +N
Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 8/127 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDIP 58
           R+++++DD  +  +I+ +L+   + +    LG D  +  K  E    D ++LD+ +  + 
Sbjct: 497 RVMIVDDDPQMLAAIQTLLQP--WGIQTITLG-DPRQFWKTLESSHPDLLVLDIEMPHLN 553

Query: 59  GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ + +R        PV  ++  +  + + +  Q+GADDY++KPF   EL  RI   +
Sbjct: 554 GIELCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRL 613

Query: 117 RRSRGHA 123
           +R++  A
Sbjct: 614 KRTQNLA 620


>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+     I      E + V V   G +G+       FDAI+LD  L  + G  
Sbjct: 4   RLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + 
Sbjct: 64  LIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++  DL ++L  + V   G  I LT +E+Q++E    RKN  +++ M L  ++D
Sbjct: 124 AEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++DV I KLR++L +  G    IETV G GY++ + 
Sbjct: 184 YHFDPNTNVVDVHISKLRRQL-DGDGADPVIETVRGAGYMVSDG 226


>gi|157962753|ref|YP_001502787.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847753|gb|ABV88252.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 5/200 (2%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           N+ V   D GE G+   + Y +DA I+D+GL  + G  +++ LR   I  P+ IL+   S
Sbjct: 24  NYTVDTADDGEIGLFQGREYNYDAAIIDVGLPKLDGIALIKELRALDIGFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ EELVAR++A++RRS G A  ++  G  S+N  +  +  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPIVSNGPFSLNTSSLEITK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL-- 201
            G  I L+G EY++ E   L      +K +   H+YD   + +  +I+VFI +LRKKL  
Sbjct: 144 SGETITLSGSEYKLFEYFMLHIGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKLDP 203

Query: 202 SNAAGGKNYIETVWGRGYVL 221
            N  G    IET+ G+GY L
Sbjct: 204 DNQLG---LIETLRGQGYRL 220


>gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 226

 Score =  145 bits (366), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 133/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRILL+EDDK +A  I   L+     V   D G DG+ +     FDAI+LD  L   I G
Sbjct: 1   MRILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR   ++TPV  LS +S ++++V+GL++G DDY+SKPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRG 120

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  A +  +V  DL ++L ++ V+  G +I L  +E++++E L    +  +T+ M L  +
Sbjct: 121 KTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR+K+       + I TV   GY+LR + 
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKVDKPF-TVSLIHTVRNAGYMLRADG 226


>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
 gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
           BH72]
          Length = 228

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  +A  I   LK   + V     G +         FD +ILDLGL  +PG 
Sbjct: 1   MRILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K + PV IL+    +ED+VRGL +GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + + V G+LS +   + V++ G  + L+ +E  ++E+  LR    ++K+  ++HL  
Sbjct: 121 GQPRCIEV-GNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKKL  A+G +  I TV G GY L
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKL-EASGVR--IVTVRGLGYCL 217


>gi|148259590|ref|YP_001233717.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|146401271|gb|ABQ29798.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
          Length = 250

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 1/188 (0%)

Query: 34  EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQS 93
           ++ ++L   YE++A+++ +  T    F+++R LR +    P+  ++   +   ++  L++
Sbjct: 34  DEAVDLSHHYEYEAVVMRVFDTYRIEFDLIRRLRKSGFRAPIVAVANTLAESARLHILEA 93

Query: 94  GADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153
           G DD I    + EE   RI+  +RR+RG   S +  G++ VN++AK V V    + +T K
Sbjct: 94  GVDDLIVGAPSYEETFLRIQNHIRRNRGFQDSSLSVGNIEVNMNAKKVFVGAREVAVTKK 153

Query: 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213
           EYQ+IELL+LRK   L+KE  L+HLY G DEP  KIIDVFICK+RKKL  AA G++ + T
Sbjct: 154 EYQIIELLALRKGCVLSKEAILDHLYGGLDEPNAKIIDVFICKIRKKLL-AADGQDVLVT 212

Query: 214 VWGRGYVL 221
            WGRGY++
Sbjct: 213 NWGRGYMM 220


>gi|326402797|ref|YP_004282878.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
 gi|325049658|dbj|BAJ79996.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301]
          Length = 250

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/188 (40%), Positives = 119/188 (63%), Gaps = 1/188 (0%)

Query: 34  EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQS 93
           ++ ++L   YE++A+++ +  T    F+++R LR +    P+  ++   +   ++  L++
Sbjct: 34  DEAVDLTHHYEYEAVVMRVFDTYRIEFDLIRRLRKSGFRAPIVAVANTLAESARLHILEA 93

Query: 94  GADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153
           G DD I    + EE   RI+  +RR+RG   S +  G++ VN++AK V V    + +T K
Sbjct: 94  GVDDLIVGAPSYEETFLRIQNHIRRNRGFQDSSLSVGNIEVNMNAKKVFVGAREVAVTKK 153

Query: 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213
           EYQ+IELL+LRK   L+KE  L+HLY G DEP  KIIDVFICK+RKKL  AA G++ + T
Sbjct: 154 EYQIIELLALRKGCVLSKEAILDHLYGGLDEPNAKIIDVFICKIRKKLL-AADGQDVLVT 212

Query: 214 VWGRGYVL 221
            WGRGY++
Sbjct: 213 NWGRGYMM 220


>gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94]
 gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1]
 gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94]
 gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1]
 gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653]
          Length = 229

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|300172681|ref|YP_003771846.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299887059|emb|CBL91027.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 141/223 (63%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           +RILLIEDD  LA +I   L  E+F +V V + G DG    +   +D II DL L    G
Sbjct: 5   IRILLIEDDVNLADNIVGFL--EDFADVNVVNNGLDGEFEGQESPYDLIISDLMLPGENG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV++ LR   I TPV IL+  SS++DK+ G   GADDY++KPF +EEL+ R++A++RR+
Sbjct: 63  FEVIKYLRKNGIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRA 122

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +++ ++I  GD+ +NL+ + V+V G +I L GKE+ ++  L+  KN  +T++   + +
Sbjct: 123 GVYSEDNMIAVGDVLINLENRGVQVHGQQIKLVGKEFDILTYLAQNKNIIVTRDQIFDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  + ++++++  LR+KL  + G  + I+T+   G++L
Sbjct: 183 WGIDSDTTINVVNIYLNNLRRKLE-SVGQNDLIKTLRNIGFIL 224


>gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica
           W22703]
          Length = 219

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +             L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I T+ G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRL 216


>gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
 gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
          Length = 223

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  I   L+   +   V + G +G++L    E+D IILD+ L  + G+
Sbjct: 1   MRILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R  K  TP+  L+   +I+D+++GL+ GADDY+ KPF   EL+ RIR I+RR  
Sbjct: 61  QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q LI  GDL ++L    V   G R+ LT KE+ +I LL+ R    LT+      ++D
Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  ++DV + +LR K+ +    K  I TV G GYVL E 
Sbjct: 181 IDFESDTNVVDVHMRRLRAKVDDPF-EKKLIHTVRGVGYVLEER 223


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K+LA  +EL L+ E +   V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++R    
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVDL 121

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     Q+ +   D+ +  + + V+     I+LT +EY+++ LL    N   ++E  L
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++   D  E  ++DV+I  LR K+ + AG  +YI+TV G GYV+R
Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227


>gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 228

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LA ++E MLK  N++V   D G+D ++     ++D  ILD+ +  + G 
Sbjct: 1   MRLLLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  K +TPV +L+  S +EDKV GL SGADDY++KPF  +EL+AR+R++ RR  
Sbjct: 61  TVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G++S++     +     ++ L+ KEYQM+E+L       +  E FL  ++ 
Sbjct: 121 TFTSNVLELGNVSLSKYTFELSTDKDKVRLSNKEYQMMEMLMRNPGNVIQTEQFLERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E+ ++ V I  LRKKL  A      I+     GY L
Sbjct: 181 YDSDSEINVVWVNISYLRKKLK-ALDANIQIKATRNVGYTL 220


>gi|46201500|ref|ZP_00208129.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  ++E   ++  F V     GEDG  L     +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDEPQLTLALERAFEAAGFAVDKAYDGEDGWHLGDTENYDAVILDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R +  + PV +L+  +   +K     +GADDY++KPF  EE+V RIRA++RR+ 
Sbjct: 61  TVLSRWRESGRAMPVMVLTARARWAEKSLAFNAGADDYVTKPFEMEEVVTRIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   I  G L+++     V   G  I LT +E++++  L+  ++  +++   + H+YD
Sbjct: 121 GHAAPEITCGPLAIDTMGGRVSRAGLPIALTAQEFRILSYLAHHQSRVISRSELVEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P+  ++DV + ++R+KL     G + I T+ G+G+
Sbjct: 181 RDADPDSNVLDVLVARIRRKL-----GVDVIHTLRGQGW 214


>gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 223

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G +       +EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGLPKLHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    S PV IL+   S+E +V+GL  GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S+I  G L+ +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEKIA 222


>gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 223

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G + ++  +    V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKK+     G + IET+ G GY ++  A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GVDLIETIRGLGYRMQAPA 220


>gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 239

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K ++  +   LK + + V + + GEDG        +D I+LD+ L    G 
Sbjct: 17  MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR +  + PV +++    +++++ GL  GADDY++KPF  +EL+ARI+A+ RRS 
Sbjct: 77  SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S++  GDL VNL  + V   G  + LT +E+ ++E L       LT+   L H++ 
Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   ++DV + +LRKK+ +A    + IETV G GY +R+
Sbjct: 197 YDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMRK 238


>gi|24373510|ref|NP_717553.1| transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
 gi|24347813|gb|AAN54997.1|AE015637_13 transcriptional regulatory protein PhoP [Shewanella oneidensis
           MR-1]
          Length = 224

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 128/219 (58%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDLILSHHLKVQLSDLGNQVQVALTAKEGFFQATNYPIDVAIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR   +  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIQQLREEGVKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I +G+L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVKPVITSGELKLDLAAKQVTLGNDIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTR-DGIDNPIATIRGQGY 217


>gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1
           str. 16M]
 gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19]
 gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator
           [Brucella melitensis ATCC 23457]
 gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 6 str. 870]
 gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 4 str. 292]
 gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 9 str. C68]
 gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus]
 gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1
           str. 16M]
 gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Brucella
           melitensis biovar Abortus 2308]
 gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19]
 gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis ATCC 23457]
 gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 229

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|167568211|ref|ZP_02361085.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 225

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E F V     GE    + K   +DA++LD+ L  + G 
Sbjct: 1   MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDL      +  +  G  + L  +E+ ++E L L++  T++K   ++ +Y 
Sbjct: 121 GVGATQLACGDLVYLFATREFQCSGVPLVLRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LS +A     I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLSGSAA---QIITLRGLGYILR 219


>gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222]
 gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222]
          Length = 219

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+  +   +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGQQILETLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H
Sbjct: 118 RASGSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   ++VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 221

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L     FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGEAIGSRLTRLGHAVDLERDGAAASSLLGVESFDLVVLDVMLPSLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  SVLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G LS++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGY 216


>gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
 gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/237 (35%), Positives = 137/237 (57%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++      FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALEQNFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDDK 237


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I+  L+ E + V     GE+G+++     +D IILD  L    G 
Sbjct: 1   MRILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKE 222


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565]
 gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565]
          Length = 218

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+K LA  +   L+   F   VTDL  DG E   L +   +DAIILDLGL   
Sbjct: 1   MRILIVEDEKILAGQLAEQLRLSGF---VTDLCHDGNEAGFLGETEPYDAIILDLGLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR+ A+VR
Sbjct: 58  DGLSVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H
Sbjct: 118 RAAGNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +Y    + +   ++VFI ++RKK +      + IETV G GY + E
Sbjct: 178 IYAQDFDRDSNTVEVFIGRIRKKTN-----PDLIETVRGLGYRINE 218


>gi|213968576|ref|ZP_03396718.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301385563|ref|ZP_07233981.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060389|ref|ZP_07251930.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302132437|ref|ZP_07258427.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926509|gb|EEB60062.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|331017510|gb|EGH97566.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 220

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 221

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKK+     G + IETV G GY +RE
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218


>gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
 gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
          Length = 219

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSAGYPCDCAGTAAEAHSLLITSQYSMVILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRREHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|330879178|gb|EGH13327.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 220

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 222

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK  AH I   L   N+ V   D G+DG+ L    ++D +I+D  L  I G 
Sbjct: 1   MRILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    P+ ILS + S+++KV GL+ GADDY+ KP+   EL+ARI  ++RR++
Sbjct: 61  SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +NL+  TV     +I L   E++++  L   +   +T+ M L +++ 
Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P+  I+DV I +LR K+      K  I+T+ G GY + E
Sbjct: 181 YNFDPQTNIVDVHISRLRSKIDRGF-DKELIKTIRGIGYKIEE 222


>gi|294140509|ref|YP_003556487.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
 gi|293326978|dbj|BAJ01709.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 127/219 (57%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H +++ L      V V    ++G      Y  D  I+DLGL D  G 
Sbjct: 1   MRILVVEDDPILSHHLKVQLSELGNQVQVALTAKEGFYQATNYPIDVAIIDLGLPDQDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  ++  P+ IL+   + +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  TLIKNLRDNELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I +G L ++L AK V +    + +T  EY ++E L    +  + K+  L+ +Y 
Sbjct: 121 GFVRPKINSGALELDLAAKQVSMNSVPMEITAFEYLILEYLMRHCHEVVAKQRLLDVIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  E +   I+V + +LRKKL+   G  N I T+ G+GY
Sbjct: 180 GDKEGDPNTIEVMVSRLRKKLTK-EGLDNPIATIRGQGY 217


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+++LA  +EL LK E + V +   G  G++      +D I+LDL L  + G E
Sbjct: 3   QILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLMLPGLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR   
Sbjct: 63  VCRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ +
Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|114797742|ref|YP_761056.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737916|gb|ABI76041.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 220

 Score =  145 bits (365), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  +A  I   LK   F V +   GED         +DAIILDLGL  + G 
Sbjct: 1   MRVLLVEDEVLIADDISAALKDSGFMVDLARDGEDAWFKGDTEPYDAIILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TP+ ILS   S  ++V G+++GADDY+ KPF   EL+ R+RA++RR+ 
Sbjct: 61  SVLKRWRAAGMITPILILSARGSWMERVDGIEAGADDYLPKPFEMAELIVRLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++  GDL V+    T+   G  + +T  E+++++ L    N T++      HL+ 
Sbjct: 121 GMAQPVLQAGDLMVDTRRMTIAYAGQPVRVTPLEFRLVDYLVHNMNRTVSAGELSEHLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D  +   I+  + +LR+KL     G   I T  G GYV+   A
Sbjct: 181 VEDTGDTNAIEAIVSRLRRKL-----GPGVISTRRGFGYVIEAGA 220


>gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IE +K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEGEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
          Length = 219

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R  +   PV ILS   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+++NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V +  LR+KL     GK+ I+TV G GY L E
Sbjct: 181 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 218


>gi|295699191|ref|YP_003607084.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438404|gb|ADG17573.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G  L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226
              +    +++  I +LR KL      K  + TV G GYVL  RE A+
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVREEAE 226


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD+ +   +   L SEN++V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E
Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228


>gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 222

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   + L + +  DA++LD+ L D+ G 
Sbjct: 19  VRVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 79  EVLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAA 138

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++L    +V GDL+++ +++ V   G  +HLT  E++++          L+K   L+
Sbjct: 139 RTTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILD 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +++     +  ++++++  LRKK+   AG    I T+ G GYVLR    D
Sbjct: 199 RVWNYDFGGQANVVELYVSYLRKKID--AGRPPMIHTMRGAGYVLRPAETD 247


>gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 222

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216


>gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
 gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
          Length = 219

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+  +   +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGQQIIETLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H
Sbjct: 118 RASGSAAPVLQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   ++VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E F V     GE    + K   +DA++LD+ L  + G 
Sbjct: 1   MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDL      +  +  G  + L  +E+ ++E L L++  T++K   ++ +Y 
Sbjct: 121 GVGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LS   G    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219


>gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator
           protein [Alteromonas sp. SN2]
          Length = 227

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +   I+  L    F + +   G DG       EF+ IILD+ L DI G+
Sbjct: 1   MKILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVMLPDINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR +   TPV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L+   DL +++ ++ V+  G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV I +LR K+ +A   K  I+TV G GY L
Sbjct: 181 INFDSDTNVIDVAIRRLRAKIDDAFSPK-LIQTVRGMGYKL 220


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 132/223 (59%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 222

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 135/233 (57%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I   L+ +N  V     GE+ I L K  E+D ++LD+ L    G+E
Sbjct: 3   RILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 63  VCQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121

Query: 120 ----RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A S +VT GDL ++ D++ V +    I+LT KE+ ++ELL+   N   ++E  
Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181

Query: 175 LNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L +++  +  D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R  +
Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFRAQS 234


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RRS  
Sbjct: 69  VIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSTS 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +A  V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/225 (41%), Positives = 134/225 (59%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L KF E +   +ILDL L  + G
Sbjct: 6   ILIVEDEKDIARFIELELQAEG---YRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ IL+    IEDKV+GL +GADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 63  IEVARRIRKTS-NVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI L+ KE++++ELL+       T+      ++
Sbjct: 122 TPAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V+  G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|304322363|ref|YP_003856006.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301265|gb|ADM10864.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 224

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  +AH +   L  E   +     G DG+E+    +FD ++LD  L  + G 
Sbjct: 1   MRVLIIEDDHKMAHYLGDGLTREGHQIQAISTGPDGLEMALAQDFDVVVLDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR A    PV +L+ M  ++D+V GL +GADDY+ KPF   E  AR+ A+VRR  
Sbjct: 61  SLLKRLRAAGRKMPVLLLTAMGGLDDRVEGLDAGADDYLVKPFAFSEAYARLNALVRRPP 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G+  +L    DL ++L A+TV   G  + L  KE+ ++E+L   KN  +TK M L  +
Sbjct: 121 IAGNPTTL-TAADLHMDLIARTVSRGGVSLDLGPKEFLLLEILLRNKNRVMTKTMLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +P+  +++  I +LR K+         +ETV G GYV+R +
Sbjct: 180 WSFHFDPQTSLVETHISRLRAKIDRPF-ASALVETVRGAGYVIRAS 224


>gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 219

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+  +   +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGQQIIDTLEGAD---WVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H
Sbjct: 118 RASGSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   ++VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTVEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   IE  L  +N+ V +   G+   E    +++D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+   +I+D+V+GL +GADDY+ KPF+ EEL AR+RA++RR  
Sbjct: 61  SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L V+  +  V  Q   + L+ KEY+++E          ++   L+HL+ 
Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   +   I  LR+KL  A    + IETV+G GY L+E
Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKE 223


>gi|51596319|ref|YP_070510.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186895361|ref|YP_001872473.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis PB1/+]
 gi|51589601|emb|CAH21231.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186698387|gb|ACC89016.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis PB1/+]
          Length = 230

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+      K  + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229


>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
 gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 251

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 33  MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R  +   PV ILS   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 93  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+++NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V +  LR+KL     GK+ I+TV G GY L E
Sbjct: 213 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 250


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 135/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +E  L++E + +     G++G+EL +  +F  I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +ALR+ K   P+ +L+ M   +D ++GL+ GADDY++KPF  +EL+ARI A+ RR+ 
Sbjct: 61  EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +++  G L  +  +  V +    I LT KE  ++ELL       L++E  L+++
Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   ++DV+I KLRKKL+  + G++ IET  G GY L
Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223


>gi|170698062|ref|ZP_02889143.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170137023|gb|EDT05270.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             DEP    ID++I +LRK L+ +      I T+ G GY+LR  +
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILRAKS 222


>gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 219

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L++   N +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQIIETLEN---NGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+AR+RA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223]
 gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223]
          Length = 219

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 131/227 (57%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L + I   L + +   +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H
Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++RKK++      + I+TV G GY L  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQLHAN 219


>gi|167588685|ref|ZP_02381073.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 221

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +  +I   L      V +   G     L +   FD ++LD+ L  + GF
Sbjct: 1   MRILVAEDDAEIGAAIRSRLTRLGHAVDLETDGATANSLLRVERFDLVVLDVMLPSMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AILRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L+++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLTIDRSSRLAELDGRPLSLSRQEFALLEILASRPQRIFSKEGLLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLH---GSSVEIRTARGMGY 216


>gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 222

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 133/232 (57%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  + + + + L    F+V + TD G+ G+E  K   +DA++LDL L  + G
Sbjct: 1   MRVLLIEDDPLIGNGLNIGLTKSGFSVDWFTD-GKTGLEAVKSAPYDAVVLDLTLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R      PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LDILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  +I    +  + +   V ++   + LT +EY+++EL  L K   LT+      LY
Sbjct: 120 YGQANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +  ++     ++V +  LRKKL     GK +I TV G GY L +N  DET E
Sbjct: 180 NWDEDISSNALEVHMYNLRKKL-----GKQFIRTVHGVGYALGKN--DETPE 224


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 2/233 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +A ++   L  +N+ V V + G+   +L + YE+D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +    P+ +L+G  S  DK  GL +GADDY+ KP ++EELVAR+RA++RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q ++  G L ++  +  V  Q  ++ LT KEY ++ELL        +  M L+HL+ 
Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231
             D P    +   I  LR KL  A    + +ETV+G GY L+  EN  D+  E
Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQENDHDDNHE 233



 Score = 43.5 bits (101), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DD      ++++L      +   +  E      +    D +ILD+ +  + G 
Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ + +R        P+  L+  S+ E   +    GADD++SKP    ELV RI   + R
Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501

Query: 119 SR 120
            R
Sbjct: 502 VR 503



 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 8/137 (5%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD      ++ +L    + V   D G+  I        D I+LDL +  + G+E 
Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135

Query: 63   LRALRVAKIST--PVCILSGM-SSIEDKVRGLQSGAD-----DYISKPFNKEELVARIRA 114
            +  L+    +   P+ I S   SS  +  R   + A+     D++SKP  + +L+  +R 
Sbjct: 1136 MAGLKKCSDTKDIPIVICSVYKSSQNNPNRQEDTNAESVKFADWLSKPVEETDLLNSLRK 1195

Query: 115  IVRRSRGHAQSLIVTGD 131
            +V       + LI+  D
Sbjct: 1196 VVSEPSKRLKILIIEDD 1212


>gi|134293501|ref|YP_001117237.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134136658|gb|ABO57772.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 224

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 126/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLHDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S I  G L+ +   ++ ++ G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRIECGPLAYDSVDRSFQLAGAALSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222


>gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 219

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 131/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +  ++  +L++E+   Y  D   DG+      +  ++D ++LDLGL   
Sbjct: 1   MRLLLVEDDAMIGEAVLQVLRAEH---YAVDWVRDGVMADAALRSEQYDLVLLDLGLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLRALR  + S PV + +   ++ D++ GL +GADDY+ KP++ +EL+ARIRA++R
Sbjct: 58  DGLDVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  + +     +S+N   +   V G  + L+ +E+ ++E L  R    L++      
Sbjct: 118 RSAGRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+  +D+     ++V+I  +RKKL N     ++I+TV G GYV+
Sbjct: 178 LFSWKDDVSSNAVEVYIHGVRKKLGN-----DFIQTVRGLGYVV 216


>gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
 gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
          Length = 234

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  ++L L+ E +   +   G  G+E     E+D I+LDL L ++ G E
Sbjct: 8   RVLIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPELNGLE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 68  VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDH 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    QS +   +L +    + V+     I LT +EY+++  L    NT +++E+ 
Sbjct: 127 NKEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREVL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++  + E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 187 LDKVWGYKTEVETNVVDVYIRYLRNKI-DVPGKDSYIQTVRGTGYVMR 233


>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 224

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD AL  ++  +L  EN+ V     G++G+ L +    D ++LD+ L +I G 
Sbjct: 1   MRILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ +R    + P+ +L+   S+ D+V GL++GADDY++KPF   EL+ARI+A++RRS 
Sbjct: 61  EIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRSG 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   I  G + ++   +   V+G  + LT KEY+++E L L K   LT+E   + ++
Sbjct: 121 NLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIFDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  + ++D++I  LRKKL+ +    N I+T+ G G++L+E 
Sbjct: 181 GFASETTISVVDLYIHYLRKKLA-SFDRDNLIQTIRGAGFMLKEK 224


>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED + L  S+ + L    + V     GE+G+ L     +D IILD+ L  + GF
Sbjct: 1   MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR     + V +L+    +ED+V GL+SGADDY+ KPF+ +EL+ARI A++RR  
Sbjct: 61  ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G+L++NL +K V V G  + L  +EY ++E L+L ++  ++++   + +YD
Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + EP   ++D  I  LRK + +     ++I T  G GY +R++
Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDH-KDRPSFILTRRGHGYQIRQS 223


>gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V     G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRARLTRLGHAVDHETDGATANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLH---GSSVEIRTARGMGY 216


>gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRGRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRRKLQ---GSSVEIRTARGMGY 216


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ N  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-NRPGENSYIQTVRGTGYVMR 227


>gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 222

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQRWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216


>gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 219

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 132/222 (59%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  ++  +L++E++ V +V D G    +  +  ++D ++LDLGL    G
Sbjct: 1   MRLLLVEDDAMIGETVLHVLRAEHYAVDWVRD-GSMADQALRSEQYDLVLLDLGLPQRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVLR+LR  + +TPV + +   +I D++ GL +GADDY+ KP++ +EL+ARIRA++RRS
Sbjct: 60  LEVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  + +     +S+N   +   V G  + L+ +E+ ++E L  R    L++      L+
Sbjct: 120 AGRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEEKLF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +DE     ++V+I  +RKKL N       I+TV G GY++
Sbjct: 180 SWKDEVSSNAVEVYIHGVRKKLGN-----ELIQTVRGLGYLV 216


>gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
 gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
          Length = 225

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L+ E F V  +D G++G+ +    ++  IILD  L ++ G 
Sbjct: 1   MKILVIEDDQTTRDFVTKALEQEGFIVDSSDDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   +L++NL ++ V +  + + L  KE+ ++  L+   +  +++       
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I KLRKKL N +G  + IETV G GYVLR
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLDN-SGAVDLIETVRGAGYVLR 223


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 130/231 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L S+++ V +   G++GI L +  ++D I+LD  L  + G 
Sbjct: 1   MRILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR A+  TP+ +L+   +  +KV  L +GADDY+ KP +  EL+ARIRA++RRS 
Sbjct: 61  DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++     V      +HLT KEY ++EL     +   ++   L++L+ 
Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             + P    +   I  LR+KL  A    + IETV+G GY LR+  ++ + +
Sbjct: 181 FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRLRQPPEEGSAQ 231



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +  +L+   F + + +  +   E  +    D +ILD+ + +  G +
Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGID 583

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  LS     E   +   +GADDY+ KP    EL+AR+   + RS
Sbjct: 584 LCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIERS 643

Query: 120 R 120
           +
Sbjct: 644 Q 644


>gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  ++  ++  L +E + V V+  G +G+EL + + +D IILD+ L  + G 
Sbjct: 1   MRILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMMLPRMDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R      PV +L+   S+EDKVR  ++GADDY++KPF   EL+ R +A++RR  
Sbjct: 61  EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +  G+L ++   + V+  G RI LT KEY ++E L       L++ M + H++D
Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    I+DV++  LR K+ +    K  I TV G GY++R
Sbjct: 181 QSFDGITNIVDVYVRHLRAKVDDGHIIK-LIRTVRGSGYMIR 221


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 130/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  EN+ V + + G+ G++      +D IILD+ L  I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + +TP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRAI+RR    
Sbjct: 64  CRRIR-QQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRRQ--P 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + ++ +A  V V G ++ LT  EY ++ +L+  +N  L +E  L+H++   
Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      +  IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLK-PFNKERTIETVRGVGYVIR 219


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  144 bits (364), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RRS  
Sbjct: 69  VIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSAS 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +A  V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232


>gi|170702017|ref|ZP_02892936.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133079|gb|EDT01488.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 224

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222


>gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 222

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   ++V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
 gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
          Length = 220

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 130/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I+  L    F+V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDKLIGDGIKAGLIKMGFSVDWFTD-GQQGLSALASAPYDAVVLDLSLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R      PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR 
Sbjct: 60  LDILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+++  G +S++    +V  QG  ++L  KE+ ++ELL   +   L + +    +Y
Sbjct: 120 YGQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  DE     I+V I  LRKK      G ++I TV G GY L E A
Sbjct: 180 NWDDEVSSNAIEVHIHHLRKKF-----GSHFIRTVHGIGYTLGEIA 220


>gi|172059097|ref|YP_001806749.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171991614|gb|ACB62533.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 225

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227
             DEP    ID++I +LRK L+ +      I T+ G GY+LR ++A+D
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILRAKSAQD 225


>gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291]
          Length = 229

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +   +   L SEN+ V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDKNIREMVYDFLISENYFVKTAVDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E
Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEE 228


>gi|209516256|ref|ZP_03265114.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
 gi|209503367|gb|EEA03365.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 133/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMYLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +    +++  I +LR KL      K  + TV G GYVL    + E+ 
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVLEVRGEAESS 228


>gi|110834226|ref|YP_693085.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis
           SK2]
 gi|254429959|ref|ZP_05043666.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|110647337|emb|CAL16813.1| DNA-binding heavy metal response regulator, putative [Alcanivorax
           borkumensis SK2]
 gi|196196128|gb|EDX91087.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 222

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L + +   L+   F+V       +   L +   + A ILDLGL D  G 
Sbjct: 1   MRLLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R  K+S PV IL+     +DKV GL++GADDY++KPF  EEL+AR+ AIVRRS 
Sbjct: 61  DVLKQWRTHKVSFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G     +  G   ++ + +T+       H LTG E++++  L  R     +KE  L+ LY
Sbjct: 121 GRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              D P   +I+ ++ +LRK +     G + I+T  G+GY+   +++
Sbjct: 181 SIDDIPSENVIEAYVRRLRKLV-----GPDTIKTRRGQGYLFDADSR 222


>gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 132/220 (60%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L+ ++  +L +  ++V     GEDG++      +D I+LD  L  + G 
Sbjct: 1   MKLLLVEDERELSEALFQILTNNKYSVDAVYDGEDGLDYALTGVYDVIVLDTMLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR + ISTPV +L+  S IED+VRGL  GADDY++KPF  EEL+AR+R+I RR  
Sbjct: 61  SLLKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKG 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 I+T GD+S+NLD   ++V    I LT KE+++I+    R    ++K+  +  L+
Sbjct: 121 NVVNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E   I+V+I  +RKKL+      + I T+ G GY
Sbjct: 181 GFDSEVEYNNIEVYISFIRKKLTYLKSNVS-IVTIRGVGY 219


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V V   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGMEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+ARIR I RR +  
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+   DL ++++++T+      I LT KE++++ +     N  LT+++ L  ++
Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +    + YI+TV G GYV+R
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HGVDKEEYIQTVRGAGYVMR 224


>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
          Length = 229

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDYI+KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
          Length = 225

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V + +LR+KL    G K  I+TV G GY+  E  +
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEGERGFKP-IDTVRGLGYLFTERCR 225


>gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 134/230 (58%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G DG+ L      D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R A+ +TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GILAAVR-ARKNTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 AQEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +  +IDV + +LR KL +    K  + TV G GYVL    + +  
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPYDTK-LLHTVRGMGYVLESRGQAQPT 228


>gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IE +K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEYEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|323488348|ref|ZP_08093596.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
 gi|323398006|gb|EGA90804.1| two component transcriptional regulator, winged helix family
           protein [Planococcus donghaensis MPA1U2]
          Length = 228

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD  L+ +I+   + + F+      GE+G+ L +   FD IILD+ L  + G+
Sbjct: 1   MKLLIIEDDPHLSDTIKETTQ-DMFHTQQAFDGEEGLFLAEQNIFDCIILDIMLPYLNGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR   I+TPV +L+    I DK++G ++GADDY++KPF++EEL+ R+ AIVRRS 
Sbjct: 60  EVLKKLRSQNITTPVIMLTAKDGIGDKIQGFKAGADDYLAKPFHREELLLRLEAIVRRSG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   +L +N+  KT ++    + L GK++ ++E L   KN  LTKE   + ++
Sbjct: 120 GELKQNTLSFKELKLNIKNKTAQLGEETVKLNGKQFDLLEYLVNNKNIILTKEQIFDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +    +++V+   LRK L      + YI+T  G GY+L +
Sbjct: 180 GFESDTSTTVVEVYASNLRKTLKKFNYDQ-YIKTFRGLGYMLSD 222


>gi|262369588|ref|ZP_06062916.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262315656|gb|EEY96695.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 220

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   + + +D ++LD GL    G 
Sbjct: 1   MRILLAEDDASQAESIKTWLEMDGYSVDWVERGDHAILAIEQHHYDCVLLDRGLPHATGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R   +STPV  L+   SI D+V GL  GA+DY+ KPF+ EEL ARIR  +R+ +
Sbjct: 61  DILLKVRGKNLSTPVIFLTARDSIRDRVEGLDLGANDYLVKPFSLEELSARIRLQLRQQQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++   ++ ++  AK+V   G  ++LT KE+Q++  L L+    +T+E     LY 
Sbjct: 121 HSSSQVLSYANIQLDPQAKSVTQNGQAVNLTAKEFQILHKLMLKPEYVVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE E   I+VFI +LRKKL     G + I+T+ G GY + ++
Sbjct: 181 WGDEIESNAIEVFIYQLRKKL-----GSHCIKTIRGLGYRMNQD 219


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K L   +E +L  E + V + D G  G+EL +   +D +ILD  L    G 
Sbjct: 1   MKILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR    +TPV  L+   +I+D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S + + DL ++ + +     G  I L+ KE Q++ L        LT E    H
Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+   ++P   ++   +  LR+K+  AAG    I TV+G+GY   EN
Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIE-AAGETPLINTVYGKGYRFGEN 226


>gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1]
          Length = 220

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVGGLHALQHETFDLLILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V+  G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|113968960|ref|YP_732753.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048902|ref|YP_739452.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113883644|gb|ABI37696.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890344|gb|ABI44395.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 224

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKAVEADYLVKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G   +    +  G ++++   +TV V  H   LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNNPSKQLSYGGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|153947115|ref|YP_001401057.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958610|gb|ABS46071.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 230

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 135/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+      K  + TV G GYVL    + +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPERQT 229


>gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
 gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E  +
Sbjct: 181 DDEERDANVIEVLVGRLRRKL-EACGGFKPIDTVRGQGYLFTERCR 225


>gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
 gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
          Length = 231

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 8   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 68  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 128 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +  +IDV + +LR K+ +    K  I TV G GYVL
Sbjct: 188 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 226


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+   + V     GE+G  L     +DA+ILD+GL  + G 
Sbjct: 1   MRILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPTMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G + ++  +  V V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKK+     G + IETV G GY ++
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GLDMIETVRGLGYRIK 217


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 214


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V V   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+ARIR I RR +  
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+   DL ++++++T+      I LT KE++++ +     N  LT+++ L  ++
Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +    + YI+TV G GYV+R
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HGVDKEEYIQTVRGAGYVMR 224


>gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family
           [Brucella canis ATCC 23365]
 gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 229

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 221

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRVLVVEDDKDLNRQISDALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKK+     G + IETV G GY +RE
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GIDMIETVRGMGYRMRE 218


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+
Sbjct: 3   VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R + ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 63  EILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K        I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+      K  I TV G GYV R+
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 224


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  144 bits (363), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L+ E + V     G D +   + +  DA+ILD+ L DI G 
Sbjct: 41  LRVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGL 100

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+R+++RRS 
Sbjct: 101 EVLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSG 160

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  GDL ++ D+  V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 161 LVAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDR 220

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  I+++++  LR+K+   AG    I TV G GYVL+
Sbjct: 221 VWNYDFGGQANIVELYVSYLRRKID--AGRNPMIHTVRGAGYVLK 263


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 69  VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAN 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 232


>gi|225874253|ref|YP_002755712.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794322|gb|ACO34412.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 230

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIEL-MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED++ LA +I   M +   + V +   G  G +LC   E+D ++LDL L  + G
Sbjct: 1   MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR +R   I+TPV +L+ ++     +  L +GADDY++KPF+  EL+AR +A++RR 
Sbjct: 61  LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  +I  G L ++   K+V   G  I L+  EY+++E L  R  + ++K+  L HLY
Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E    +I+  I  LR+KL N   G  +IET+ GRGY L
Sbjct: 181 DYNWEHHSNVIEAHISNLRRKL-NQQEGDAWIETLRGRGYRL 221


>gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216


>gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K +A  +   L++E F V V + G  G E+   Y +D +ILDL L  + G 
Sbjct: 1   MRLLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPTLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR      PV +L+    + +K+   ++GADDY++KPF   EL+ R++A++RR  
Sbjct: 61  EILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S++  GDL ++   + V   G +I LT KEY ++E L+      L++ M + H++D
Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E    I+DV++  LR K+ +    K  I TV G GY
Sbjct: 181 ESFEGLTNIVDVYVRHLRSKVDSGYPCK-LIRTVRGVGY 218


>gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 219

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+      +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDARLGEQIIASLEQTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++  +  V  +G  I+LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++      N I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQL 216


>gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
 gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
          Length = 220

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1]
 gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044]
 gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator
           [Escherichia coli ATCC 8739]
 gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR
 gi|619132|emb|CAA58529.1| pcoR [Escherichia coli]
 gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1]
 gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli
           ETEC H10407]
 gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509]
 gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 226

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 3   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 63  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +  +IDV + +LR K+ +    K  I TV G GYVL
Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 221


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R    + PV IL+      DKV G+ +GADDY++KPF+ +E++ARIRA++RR+ 
Sbjct: 61  TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VFI +LRKK+ N     + IETV G GY ++
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGN-----DLIETVRGLGYRMQ 217


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  I + L+ E + V     G   +   + +  DAI+LD  L D  G 
Sbjct: 19  LRVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+RA++RR  
Sbjct: 79  EVLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAG 138

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +R    S+I  GDL+++ D++ V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 139 ATRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDR 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LRKK+   AG +  I T+ G GYVL+
Sbjct: 199 VWSYDFGGQANVVELYISYLRKKID--AGREPMIHTMRGAGYVLK 241


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 133/234 (56%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+ E+F V     G   + +    +FD IILDL L  + G  V
Sbjct: 4   ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGIAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R AK+ TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARIRAI RR+   
Sbjct: 64  TKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTTQP 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   IV GDLSV+      +   H++HLT KE++++     R N   ++E  L
Sbjct: 124 IEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREKLL 183

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++ G D P E +++D+ +  LR+K+ +      Y++TV G GY L + A D+
Sbjct: 184 NAVW-GFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHDQ 236


>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
           pyogenes SSI-1]
 gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
           [Streptococcus pyogenes SSI-1]
          Length = 228

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI  R   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 133/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V VT  G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+ N       I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIENNKYPWK-IKTVWGVGY 219


>gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E  ++   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFNTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|172063171|ref|YP_001810822.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171995688|gb|ACB66606.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222


>gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 228

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 132/220 (60%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 5   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 65  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 125 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +  +IDV + +LR K+ +    K  I TV G GYVL
Sbjct: 185 NFDSDTNVIDVAVRRLRSKIDDDFEPK-LIHTVRGAGYVL 223


>gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H++   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL ++   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +A  +   LK++ F V     GE  +       +D ++LDLGL    G 
Sbjct: 14  MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 74  DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 194 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 229


>gi|218674674|ref|ZP_03524343.1| two-component response regulator protein [Rhizobium etli GR56]
          Length = 222

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   L K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYTIDIAYDGEDAEHLLKVAEYSAMILDLSLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    P+ IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGNKLPIIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G+L  +   +   V+G  + LT +EY ++E L ++   T++K      ++ 
Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGNTVSKAALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I++++ +LRKKL  ++     I T+ G GY+LR
Sbjct: 181 FDDEADPSAIEIYVHRLRKKLEASS---VQIATLRGLGYLLR 219


>gi|209549867|ref|YP_002281784.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535623|gb|ACI55558.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 222

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L+  I  +L+SENF V +   GED +       FD  ILDLGL  I G 
Sbjct: 1   MRVLLVEDDEDLSGRIAAVLRSENFVVDIARNGEDALHAGLTELFDVAILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R    + PV +L+      DKV   ++GADD+++KPF  EELV R+RA+VRR+ 
Sbjct: 61  SVLKEWREGSRNLPVLVLTARDGWPDKVASFKAGADDFLAKPFKVEELVLRLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G L  +    T E+ G  + LT  E++++  L LRK   + +      +YD
Sbjct: 121 GHAAARLTCGALVFDAQLGTFELDGLPLKLTALEWRVLSCLMLRKEMIVDRRELTERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G  E +   I+V I +LRKKL     G + IETV GRGY+L   A
Sbjct: 181 GDAEVDSNSIEVIIARLRKKL-----GGDRIETVRGRGYMLTAAA 220


>gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E  ++   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L+   + V     G +       +EFD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGLPKLHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R     TPV IL+   S+E +V+GL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G LS +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             DE     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 181 WGDEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEKIA 222


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L++++  +LK  N++V     G D +E      +D IILD+ +  + G 
Sbjct: 1   MRILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNYDVIILDIMMPKMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  LR   I TP+ +L+  + IED++ GL +GADDY+SKPF   EL+AR+RA+ RR  
Sbjct: 61  ETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G++S+N +   +  +   + L  KE+QM+E+L       ++ E F+  ++ 
Sbjct: 121 EFTPNLVKVGNISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E+ ++ V+I  LRKKL+ +      I+   G GY L E
Sbjct: 181 YDAEAEINVVWVYISYLRKKLA-SLNANIKIKAGRGIGYTLEE 222


>gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     Y FD  I+DLGL  I G 
Sbjct: 17  MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGLPGISGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 77  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V + +LR+KL  A G K  I+TV G GY+  E  +
Sbjct: 197 GDEERDPNVIEVLVGRLRRKLEGAHGFKP-IDTVRGLGYLFTERCR 241


>gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM
           4166]
          Length = 225

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKVLVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ I  G L ++L+ K     G  + LT  EY+++E L   +   + KE  +  LY 
Sbjct: 121 GFTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G +E +  +I+V + +LR+KL      K  IETV G GY+  E  +
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKP-IETVRGLGYLFTERCR 225


>gi|167584532|ref|ZP_02376920.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 223

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 127/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLSDALAAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSKVECGPLAFDSVDRSFRLAGEALPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +      I++++ +LRKKL N+      I T+ G GY+L   A+
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKAE 223


>gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSCIKTIRGLGY 214


>gi|117919068|ref|YP_868260.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611400|gb|ABK46854.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKALEADYLVKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G   +    +  G ++++   +TV V  H   LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNNPSKQLSYGGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|330810822|ref|YP_004355284.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378930|gb|AEA70280.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELMAGLARQGYAVDWLADGRDAVYQGSSEPYDLIILDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  DVLAQWRAGGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q  + +  L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQVNQPTLKSAGLHLDESRQCVVRDGTDIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+    A+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLFGGQAQ 222


>gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVVETRRGQGYL 216


>gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 221

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED  +LA  +   L+ + + V     G D         +D +ILDLGL   PG 
Sbjct: 1   MRLLLVEDSVSLADELVASLQRQGYAVDWLADGRDAARQGACEPYDLMILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R   ++TPV +L+  +S  +++ GL++GADDY+ KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +  G L ++   + V      I LT  E++++  L L     L+K     HLY
Sbjct: 121 GLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V I +LR KL     G+  IET  G+GY
Sbjct: 181 DGETERDSNVIEVHINRLRGKL-----GRTVIETRRGQGY 215


>gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 127/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + Y++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQYDYDCILLDPGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIR  +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|189352929|ref|YP_001948556.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189336951|dbj|BAG46020.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N+      I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 222


>gi|115358419|ref|YP_775557.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115283707|gb|ABI89223.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALTAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 136/222 (61%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K+L   I   L+ E++ V     G+D ++     E+DAIILD+ L ++ G+
Sbjct: 1   MRILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+   SIED+V+GL SGA+DY++KPF  EEL+ARIR ++R+  
Sbjct: 61  EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++    +L+V+ ++ +V      I L+ +E+ ++E +   +   L+K+    H+++
Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +I+V+I  LRKK+ +A      I  ++G GY+L+
Sbjct: 181 YDYEGGSNVIEVYIRYLRKKI-DADFSPKLIHNIYGVGYILK 221


>gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 232

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A  ++  L+ E F+V     GE+G  L     FD ++LDL L    G 
Sbjct: 1   MRLLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR   I+ PV ++SG  S+EDKV GL +GADDYI KPF   E++ARIR ++RR  
Sbjct: 61  EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                L+  GDL+++L  + V   G  I LT +E++++E L       +T++M    ++ 
Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            D R      +IDV I ++RKKL +    +  + T  G G+ L+    D
Sbjct: 181 EDTRATNLDNVIDVHIARIRKKLDHGH-ERKLLHTQRGVGFQLKNPELD 228


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 134/233 (57%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L  +   V     GE+ +E+ K   +D ++LDL L  I G  
Sbjct: 4   KILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKIDGIA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI RRS G
Sbjct: 64  VCQQVREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ +I +G L ++ DA+T+++ G  I+LT KE+ ++ELL+       ++E
Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++ G D P +V+ +DV + +LR+K+   A    YI+T WG GY   +N
Sbjct: 183 SLLNTVW-GYDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL   +G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPSGYQKDIQTVRGIGYILKEQ 223


>gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 129/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +  +  +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL   +G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPSGYQKDIQTVRGIGYILKEQ 228


>gi|77459994|ref|YP_349501.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383997|gb|ABA75510.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L+ + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++ PV IL+   S  +++ GL++GADDY++KPF+ EEL  RI++++RRS+
Sbjct: 61  EVLAQWRAGGLTIPVLILTARDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           DG  E +  +++V +  LR+KL     GK+ IET  G+GY+    A
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GKSVIETRRGQGYLFGGQA 221


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L  E ++V     G +G+++    + D ++LD+ +  + GFE
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR    +TPV +L+    +E++V+GL +GADDY+ KPF  EEL+AR+RA++RR  G
Sbjct: 64  ALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              S   +   DL ++ DA+ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 124 DDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K +   GGK  I+T+ G GY+LR
Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEEHGGKRLIQTIRGAGYILR 225


>gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 236

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   LK   F V     GE+G       ++DA ++D+ L  + G 
Sbjct: 15  MRILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR   I  PV  LS  +S++D+V+GLQ+G DDY++KPF   EL ARI+A++RR+ 
Sbjct: 75  SLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRRAS 134

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +T GDL ++L  + V   G +I L  +E+ ++E L       +TK M L H++
Sbjct: 135 NATEPTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  ++DV + +LR K+      K  + T+ G GYVL+
Sbjct: 195 DYSFDPQTNVVDVLVFRLRNKIDK---DKKMLHTIRGVGYVLK 234


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ LA  IEL  K EN+ V V   G  G+     ++FD I+LDL L ++ G E
Sbjct: 3   KVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+ +++    I DKV GL  GADDYI KPF  EEL+AR RA++RR   
Sbjct: 63  VCKRLRTQK-DTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSD 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S   ++    + ++  A  V  Q  ++ LT  E+ ++ LL+  KN  L +E  L+H+
Sbjct: 122 ENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E E  ++DV+I  LR KL      K  IETV G GYV+R+
Sbjct: 182 WGYESEVETNVVDVYIRYLRNKLKRIDKQK-LIETVRGVGYVIRQ 225


>gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   +   L +E++             L +  ++  IILDLGL D+ G 
Sbjct: 1   MKILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGLPDLDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R + +  PV +L+   +IED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   ++ +NL  + V   G +I LT KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+     ++V I  LR+KL     GK  I+TV   GY L
Sbjct: 181 WQDDLSSNTLEVHIHNLRRKL-----GKERIKTVRSVGYRL 216


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  S+   L+ + +       GE+G+ELC    +D I+LDL L  I G 
Sbjct: 1   MHILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R    +TPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    ++ +   +   V G  + LT KE  ++E   L +N  ++ E  + HL+D
Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G        I V I  LRKKL  A  G + I+   G+GY+L E
Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRTAL-GYDPIQNKIGQGYILEE 222


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ ED + +   I   L +E+++V     G++ ++  +  E+DA+ILD+ +  + G 
Sbjct: 20  VRILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K   PV +L+ M SIED+V GL +GADDY+ KPF  EEL+AR+R ++R+  
Sbjct: 80  QVLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPA 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++   GDL V++D + V   G  I L+GKE+ ++  +       L++E    H+++
Sbjct: 140 AVKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIWN 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+ +    K  I TV G GYVL++ 
Sbjct: 200 YDYTGSSNVIDVYIRYLRKKIDDGY-EKKLIHTVRGAGYVLKDT 242


>gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228


>gi|22126192|ref|NP_669615.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45441652|ref|NP_993191.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807379|ref|YP_651295.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|108811644|ref|YP_647411.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|149366068|ref|ZP_01888103.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165926520|ref|ZP_02222352.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938800|ref|ZP_02227354.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009328|ref|ZP_02230226.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210680|ref|ZP_02236715.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401418|ref|ZP_02306915.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420362|ref|ZP_02312115.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424664|ref|ZP_02316417.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024423|ref|YP_001720928.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis YPIII]
 gi|218929111|ref|YP_002346986.1| transcriptional activator [Yersinia pestis CO92]
 gi|229894710|ref|ZP_04509890.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|229897410|ref|ZP_04512566.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229898052|ref|ZP_04513203.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901922|ref|ZP_04517043.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|270490895|ref|ZP_06207969.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294503927|ref|YP_003567989.1| transcriptional activator [Yersinia pestis Z176003]
 gi|21959158|gb|AAM85866.1|AE013833_4 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436514|gb|AAS62068.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775292|gb|ABG17811.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|108779292|gb|ABG13350.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|115347722|emb|CAL20637.1| transcriptional activator [Yersinia pestis CO92]
 gi|149292481|gb|EDM42555.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165913163|gb|EDR31786.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921741|gb|EDR38938.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991883|gb|EDR44184.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207860|gb|EDR52340.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962057|gb|EDR58078.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049114|gb|EDR60522.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056546|gb|EDR66315.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750957|gb|ACA68475.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis YPIII]
 gi|229680818|gb|EEO76913.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|229689093|gb|EEO81158.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693747|gb|EEO83796.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229702183|gb|EEO90202.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|262361952|gb|ACY58673.1| transcriptional activator [Yersinia pestis D106004]
 gi|262365909|gb|ACY62466.1| transcriptional activator [Yersinia pestis D182038]
 gi|270339399|gb|EFA50176.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294354386|gb|ADE64727.1| transcriptional activator [Yersinia pestis Z176003]
 gi|320015323|gb|ADV98894.1| transcriptional activator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 230

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+      K  + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229


>gi|92112763|ref|YP_572691.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91795853|gb|ABE57992.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL+EDD ALA ++ E  +++     +  + GE    L +   +DA+ILDLGL D  G
Sbjct: 1   MKVLLVEDDTALAQALGEAFVEAGLLWEHAAN-GEAADYLVRVEAYDAVILDLGLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L A R   I  PV +L+      DK  G  +GADDY++KPF   E++ R+RA+VRRS
Sbjct: 60  TRWLAAWREDGIDLPVLVLTARERWSDKAAGFSAGADDYVTKPFETAEVLFRLRALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GHA  ++  G+L+++    +V + G  I LT +E +++  L       +T+     H+Y
Sbjct: 120 HGHAHPILKLGELALDTHTGSVTLAGRPITLTAQESRLLAYLLHAAPRIVTRTELSEHVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   EP+  +IDV I +LR+KL N       IET+ G+GY L
Sbjct: 180 DRDHEPDSNVIDVQISRLRRKLGN-----QRIETLRGQGYRL 216


>gi|300856229|ref|YP_003781213.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436344|gb|ADK16111.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 123/203 (60%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L++++  +LK  N++V     G D ++   +  +D IILD+ +  + G 
Sbjct: 1   MRILLAEDEKELSNALAAILKHNNYSVDAVYDGADALKCGLYKSYDVIILDIMMPKMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  LR   I TP+ +L+  + IED++ GL +GADDY+SKPF   EL+AR+ A+ RR  
Sbjct: 61  EALGNLRKEGIHTPILMLTAKAEIEDRILGLNTGADDYLSKPFAMGELLARVHAMTRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A SL+  G++S+N +   +  +   + L  KE+QM+E+L       ++ E F+  ++ 
Sbjct: 121 EFAPSLLKVGNISLNKENYELSSKKSSLRLGNKEFQMLEMLMNNPKCLISTEHFMERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             +E E+ ++ V+I  LRKKLS+
Sbjct: 181 YDEEAEINVVLVYISYLRKKLSS 203


>gi|167585029|ref|ZP_02377417.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 225

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADAVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLGRLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L++N T++K   ++ ++ 
Sbjct: 121 GVGATRLVCGDLVYAFGTREFRCHDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L+ +      I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLALSTA---EIITLRGLGYILR 219


>gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED+++GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR KL +    +  + T+ G GYVL   + D
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLESRSDD 225


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   LK+  F  + T  G   + L    +FD IILD+GL DI GFE
Sbjct: 3   RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R    
Sbjct: 63  VLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122

Query: 122 HAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +T  D+ ++L A+T+ ++G  + L+ +E+ + E         L++E  L+ ++ 
Sbjct: 123 APDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|330889138|gb|EGH21799.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 220

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   + 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSHT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L   A
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220


>gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586]
 gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586]
          Length = 219

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L + I   L + +   +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H
Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI +LRKK++      + I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRLRKKIA-----PDVIKTVRGLGYQL 216


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|170735656|ref|YP_001776916.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169817844|gb|ACA92426.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + K+     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +      I++++ +LRKKL N       I T+ G GY+L   A++
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKAEE 224


>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/202 (37%), Positives = 122/202 (60%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ L++++  +L   N++V     GED +   +   +DA+ILD+ +  I G 
Sbjct: 1   MRILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENYDAVILDIMIPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV +L+  S I+D+V GL SGADDY++KPF  +EL+AR+RA+ RR  
Sbjct: 61  EVLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  G++S+N  +  +        L  KEYQMIE+L + +N  +  E F+  ++ 
Sbjct: 121 QLTENIVKVGNISLNRSSFELFSDSGSFRLANKEYQMIEMLMVNQNQLIPTEKFMERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
              E E+ ++ V I  LRKKL 
Sbjct: 181 YDSEAEINVVWVHISFLRKKLQ 202


>gi|170725025|ref|YP_001759051.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810372|gb|ACA84956.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +E  LK   +   VTD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKASEADYLLKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   I TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ RI A+++R+ 
Sbjct: 61  ELLSRWRNQGIHTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLVRINALIQRAH 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A S    +    ++++ D ++V VQ  +  LT  E++++++  +     L+K    + 
Sbjct: 121 GKANSPSKELSYAGITLDEDQQSVMVQEEKFELTAMEFRLLKIFIMSPKKLLSKAQLTDK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   DE E  +++V++  LRKKL     GK  IET  G+GY+ 
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTSIETRRGQGYIF 219


>gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 224

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED   +   +   LK+  ++V     G D ++     E+DA+ILD+ L  + G 
Sbjct: 1   MRILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R A   TPV +L+    I+D+VRGL SGADDY+ KPF  +EL+AR+R ++RR  
Sbjct: 61  EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL V+  A+T    G  I L+ KE+ ++E L+      L++E     +++
Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    ++DV+I  LRKK+      K  I TV   GYVLRE
Sbjct: 181 YDYEGGSNVVDVYIRYLRKKIDEGRQPK-LIHTVRSVGYVLRE 222


>gi|254489992|ref|ZP_05103187.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224465077|gb|EEF81331.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 227

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L   IE  LK +N  V     GE+G+ +   Y +D  I+DLGL  + G 
Sbjct: 1   MRVLVIEDEVHLREQIEQQLKQQNLTVDAVSDGEEGLFMGSEYPYDVAIIDLGLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ LR   +  P+ IL+     +DKV GL+SGADDY+ KPF+ EEL+AR+ A+ RR+ 
Sbjct: 61  DVIQQLRQQGVDYPILILTARGRWQDKVEGLESGADDYLVKPFHFEELLARLNALSRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + +N   + V      I LT  EY+++  L L     ++K    +H+Y+
Sbjct: 121 GWANPTLCCGPICLNPSTQQVTKHDQVIDLTAYEYRLLHYLLLHAGEVISKTELTDHIYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VF+ +LR KL +     N IET+ GRGY L
Sbjct: 181 QDQDRDSNVIEVFVKRLRGKL-DPDKALNPIETLRGRGYRL 220


>gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
          Length = 221

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +++ L+ E++ V V   G+ G+E     ++D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR LR A++ TPV +L+  ++  DKV GL  GA+DY++KPF  EEL+AR+R+ +R RS 
Sbjct: 64  VLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRSL 123

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             A         L+   DL++NL+ + V      I LT KEY ++  L   KN  +T+E 
Sbjct: 124 VEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTREG 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L +++    E E  +IDV+I  LRKK+ +     + I TV G GY+++E
Sbjct: 184 ILTNVWGYEYEGETNVIDVYIRHLRKKV-DEGFSTSLIHTVRGVGYMMKE 232


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  144 bits (362), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 125/226 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD ++A +IE  L  +++ V V   G++  EL   +E+D I+LD+ L  I G 
Sbjct: 1   MKILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R  R     TP+ +++   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RR  
Sbjct: 61  SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++ ++  +  V  Q   I L+ KEY+++E     +    ++   L HL+ 
Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               PE   +   I  LR+KL       + IETV+G GY L+E  +
Sbjct: 181 FERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRLKEKPE 226


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 13  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 73  VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAT 132

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 133 GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 193 NYDFRGDDNIVESYISYLRRKVDNTQ--PRLIHTLRGVGYVLRKPA 236


>gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2846]
          Length = 221

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGHHHSVIEQSGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  +TV      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDAIETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYVIRE 228


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|294508522|ref|YP_003572581.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344851|emb|CBH25629.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 246

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 131/236 (55%), Gaps = 4/236 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61
           +L++EDD  L+ S+ L L+SE + V + ++GE  +E   +   +D I+LD  L D+ GFE
Sbjct: 11  LLVVEDDSELSTSLLLYLESEGYEVTLAEMGETALEEATRLPGYDLIVLDAKLPDLSGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR  R   + TPV +L+G+   E K+RG Q GADDY++KPF  EELVARI  ++RR   
Sbjct: 71  VLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAE 130

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                     G L V+L+   V   G  + LT  EY+++  L  R+  T T+E  L  ++
Sbjct: 131 ATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           D   E E + ID  +  LR  +   A  +  I++V+G GY L E A+  T    ET
Sbjct: 191 DLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKL-EGAERTTGSEQET 245


>gi|300774744|ref|ZP_07084607.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506559|gb|EFK37694.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 131/221 (59%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  LA S++  L+ EN+    +    + +E   F  +D I+LD+ L D  G 
Sbjct: 1   MKILIIEDNHELAQSMKYYLEGENYICECSHHYNEALEKLSFNSYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  ++  KIS+ + I+S  ++++DK+ GL+ GADDYI+KPF+  EL AR+RA+ RR +
Sbjct: 61  NILNYIKTEKISSGILIISAKNALDDKINGLERGADDYITKPFHLPELHARLRAVYRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               S +   ++ +N D   V +   R+ +T KE++++    + KN  L+K+   NHL+ 
Sbjct: 121 MEGYSEVKFNEIILNTDTYEVIINETRLEVTQKEFELLLYFLVNKNRVLSKQSIANHLWG 180

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D       +   +  LRKK+  AA GK+YIET++G GY
Sbjct: 181 DYTDNLSNFDFVYQHVKNLRKKIG-AAQGKDYIETIYGLGY 220


>gi|153010837|ref|YP_001372051.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562725|gb|ABS16222.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 222

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA+ +   L+  N++V       D  +   F E+D ++LDLGL D  G 
Sbjct: 1   MRILLVEDNLTLANWLAKSLQQSNYSVDTVHDAADAEQALAFTEYDLVVLDLGLPDKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R      PV IL+  +S++ ++RGL +GADDY++KPF   EL ARIRA +RRS 
Sbjct: 61  DVLEHIRGRGNEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L  + + +   +    + L  KE+ ++E L  R  TT++K   +  +YD
Sbjct: 121 QRTAPVVTCGLLRFDTNTRLFSLGDDPLSLAPKEHAVLEQLLRRIGTTVSKTTLVQGIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +   I+++I +LRKKL    G K  I T+ G GY+LRE
Sbjct: 181 FDSETDENAIEIYIHRLRKKLE---GSKAEIVTLRGLGYLLRE 220


>gi|167579287|ref|ZP_02372161.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E F V     GE    + K   +DA++LD+ L  + G 
Sbjct: 1   MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDL      +  +  G  + L  +E+ ++E L L++  T++K   ++ +Y 
Sbjct: 121 GVGATQLACGDLVYLFATREFQCGGVLLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LS   G    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219


>gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 218

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD + A SI+  L+ + + V   D G+  I   K +++D I+LD GL    G 
Sbjct: 1   MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR  +  TPV +++   SI D+V GL  GA+DY+ KPF+ EEL ARIR+ +R  +
Sbjct: 61  QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+   ++ +N   K V++ G  + LT KE++++  +       +T+E   + LY 
Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+VFI +LRKK+     G NYI+T+ G GY + E
Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GTNYIKTIRGLGYRMSE 218


>gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL ++   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222


>gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL ++   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222


>gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
 gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L ++ +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTNQGYACDCAGTAAEAHSLLHTSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 222

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED  +LA  +   L  + + V     G D +       +D IILDLGL  +PG 
Sbjct: 1   MRLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIILDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R   ++TPV +L+   S  +++ GL++GADDY+SKPF+ EEL  R++A++RRS 
Sbjct: 61  EVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQQTLQAAGLHLDEGRQCVVRDGQDVLLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+ 
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLF 217


>gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 230

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFEQK-LLHTIRGMGYVL 219


>gi|172038472|ref|YP_001804973.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699926|gb|ACB52907.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 609

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+  +  +  +L+S +F V V   G++G+E    +++D IILDL L  I G 
Sbjct: 1   MKILLIEDDQLTSEYLAAVLESHHFIVDVVFNGQEGLEYANLWDYDVIILDLQLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR+ K  TP+ IL+     +    GL +GADDY+ KP +  +L+ARIRA+ RR  
Sbjct: 61  SLCRQLRMKKKQTPILILTACQETDKISIGLDAGADDYVLKPCDPPQLIARIRALTRRGY 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S ++T G LS+NL +  V  Q   ++L  +EY ++EL         ++ + ++HL+
Sbjct: 121 NISSSSVLTWGLLSLNLVSAQVTYQKQEVNLRNQEYHLLELFLRHPQRIFSRSLIIDHLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  D P    +   +  LR KL  A   ++  ET++G GY L     D
Sbjct: 181 EVGDVPSESAVTNLVKDLRNKLKAAGMEEDIFETIYGLGYRLNPVPTD 228



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 14/124 (11%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56
           I++++DD  +  +I  +L    F +  T L +    + +F++       D +ILDL +  
Sbjct: 492 IMIMDDDSTIVTAIRNILHPWGFQI--TGLSQ----VNQFWKILTQTNPDLLILDLEMPT 545

Query: 57  IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           I G E+ R +R  K     P+ I++  +  +   +  ++GA+D++ KP    ELVAR+  
Sbjct: 546 INGIELCRVVRQDKQYAKLPIIIVTAHTETKYLQQSFEAGANDFLGKPIIPSELVARVFN 605

Query: 115 IVRR 118
            +++
Sbjct: 606 QIKK 609


>gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19]
 gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870]
 gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292]
 gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915]
 gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68]
 gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19]
 gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915]
 gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E  ++   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
 gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 132/224 (58%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H  SL    DL + ++++T+      I LT KE++++ +     N  LT+++ L+ +
Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
 gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
          Length = 219

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L++   N +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGEQI---LETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL AR+RA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++  +  V  QG  + LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 221

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+    + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDSQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++ ++ ++RKKL    G    I T  G GY
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGY 216


>gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28]
 gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis M5-90]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++ R+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|325289148|ref|YP_004265329.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964549|gb|ADY55328.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 140/231 (60%), Gaps = 13/231 (5%)

Query: 1   MRILLIEDDKALAHSI-----ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           MR+L+IEDD  L+ +I      L +  + F+      GE+G+ L +   +D I+LD+ + 
Sbjct: 1   MRVLVIEDDPVLSATICRSLGGLFVYEQAFD------GEEGLYLAEQEIYDVIVLDIMMP 54

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G++VL ALR   +STPV +L+   +I+DKV+G + GADDY+ KPF ++EL+AR+ ++
Sbjct: 55  KMNGYQVLSALREKGVSTPVLLLTAKDNIDDKVKGFKLGADDYLVKPFYRQELLARLESL 114

Query: 116 VRRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +RRS G  +  I+   DL++NL  +TV+++   + L G+++ ++E L    N+ +TK+  
Sbjct: 115 IRRSGGALKENILNFRDLTLNLSNRTVKIRDEELTLAGRQFDILEFLIRNHNSIVTKKQI 174

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            + ++    +  + ++DV+   +RK L    G   Y++TV G GY++  N 
Sbjct: 175 FDRIWGFDSDTTITVVDVYTSNIRKALQK-KGYDKYLKTVRGVGYMITGNG 224


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 130/233 (55%), Gaps = 3/233 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED+  L   I   L      + V   G  G+E+   ++FD IILD+ L+ + G 
Sbjct: 1   MKILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R    + PV +L+ +SS E+ + GL SGADDY+ KPF   EL ARIR++VRRS+
Sbjct: 61  QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S      L V+  AKTV   G  I+LT  EY+++E     +N  L++   L ++
Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +D        ++DV+I  LRKK+ N    K  I TV+G GY+ +  A +E  +
Sbjct: 181 WDIDFNMGTNVVDVYINYLRKKIDNGYQTK-LIHTVFGMGYIFKSQAPNEDTD 232


>gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ ED+  +A  +E  L++  F   V   G          +FD +ILD+GL  + GFE
Sbjct: 3   RVLIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  +++ PV IL+   S++D V  L+ GADDY+ KPF  EEL+AR+R  +   R 
Sbjct: 63  VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  GDLS++L  +  +     + L+ +E+ + E         L +E  L+H++  
Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DV++  LR+KL     G + IETV G GY L
Sbjct: 183 DFDPGSNVVDVYVRYLRRKL-----GADRIETVRGMGYRL 217


>gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|171318586|ref|ZP_02907735.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171096240|gb|EDT41149.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   +   + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRGFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKA 222


>gi|28869098|ref|NP_791717.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852338|gb|AAO55412.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 220

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      +++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 130/227 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +A+++   L  +N+ V + + G+   +L + YE+D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +    P+ +L+G  S  DK  GL +GADDY+ KP ++EELVAR+RA++RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++Q ++    L ++  +  V  Q  ++ LT KEY ++ELL        +  M L+HL+ 
Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             D P    +   I  LR KL  A    + +ETV+G GY L+    D
Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227



 Score = 42.0 bits (97), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD      ++++L      +   +      E  +  + D +ILD+ +  + G E
Sbjct: 375 KILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTMSGIE 434

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+  L+  S++E   +    GADD++SKP    EL  RI   + R 
Sbjct: 435 LCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLERV 494

Query: 120 R 120
           R
Sbjct: 495 R 495



 Score = 37.7 bits (86), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 8/137 (5%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD      +E +L    + V     G+  I        D I+LDL +  + G+E 
Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123

Query: 63   LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGAD------DYISKPFNKEELVARIRA 114
            +  L+    +   P+ I S   S ++     Q          D++SKP  + +L   +R 
Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLRK 1183

Query: 115  IVRRSRGHAQSLIVTGD 131
            +V       + LI+  D
Sbjct: 1184 VVFEPSRKLKILIIEDD 1200


>gi|170692767|ref|ZP_02883929.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170142423|gb|EDT10589.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 234

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G  L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTYLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++  I +LR KL      K  + TV G GYVL
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPSK-LLHTVRGMGYVL 219


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  ++  ++  L+ E F V +   G+ G+++    E+D +I+D  +  I G 
Sbjct: 1   MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A  S P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  +RR+ 
Sbjct: 61  EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  G ++VN     V  +   I LT KE+ ++E L+  K+   T+   + H++D
Sbjct: 121 PESDT-ITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV+I  LRKKL +  G  N I+T+ G GY++RE+
Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DIVGCGNIIQTIRGVGYIIRES 222


>gi|107026470|ref|YP_623981.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692342|ref|YP_837875.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|254248532|ref|ZP_04941852.1| DNA-binding response regulator [Burkholderia cenocepacia PC184]
 gi|105895844|gb|ABF79008.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650342|gb|ABK10982.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124875033|gb|EAY65023.1| DNA-binding response regulator [Burkholderia cenocepacia PC184]
          Length = 224

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G LS +   ++  + G  + LT +E  ++E+L LR    + K+     ++ 
Sbjct: 121 GHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +      I++++ +LRKKL N       I T+ G GY+L   A+
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENTGVA---IVTLRGLGYLLEAKAE 223


>gi|322388071|ref|ZP_08061677.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141092|gb|EFX36591.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 223

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 135/222 (60%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL+VNL    V+VQ   + L GKE++++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGDLTVNLSTNEVKVQDASVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL  +A  +N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSAFAEN-LQTLRSVGYILK 221


>gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFEHK-LLHTIRGMGYVL 219


>gi|330830551|ref|YP_004393503.1| transcriptional regulatory protein PhoP [Aeromonas veronii B565]
 gi|328805687|gb|AEB50886.1| Transcriptional regulatory protein PhoP [Aeromonas veronii B565]
          Length = 229

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK L H +  +L   +  VY TD     +     Y  D  I+DLGL D+ G 
Sbjct: 6   MKILLVEDDKLLNHHLSSLLTEADNQVYSTDQAGIALHYAADYPIDVAIIDLGLPDMDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I  P+ +L+   + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS 
Sbjct: 66  QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
           G     +  GD  ++L  K + + G    LT  EY ++E L       ++K+  L+ LY 
Sbjct: 126 GFISPKVKAGDYELDLSRKELTIAGEVAVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  +P    I+V + +LRKKL +  G    I T+  +GY+ 
Sbjct: 186 DGEGDPNT--IEVMVSRLRKKL-DPEGTIQPISTIRRQGYIF 224


>gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato K40]
          Length = 225

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL ++   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K +A  +   L  E F V V   G  GI   +    D +ILD+ L  + GFE
Sbjct: 9   RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R LR A    P+ +L+   ++ D+V GL+SGADDY+ KPF  EEL+ARIRA++RR  +
Sbjct: 69  VCRRLR-AGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++    L +N  ++ V + G  + LT KEY+++EL        LT+++  + ++
Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 E  II+V++  LR+KL  +  G+  + TV G GY+LRE    E
Sbjct: 188 GYDFGGESNIIEVYVRYLRQKLEESGEGR-MLHTVRGAGYILREQPYGE 235


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L+   F       G + ++  +  + D IILD+ L  + GFE
Sbjct: 6   KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR A+ S P+ +L+      D+V GL+ GADDY++KPF+  ELVAR+RAI+RR   
Sbjct: 66  VCRSLR-ARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q    +I  GDL +N  +  V V+G  + LT KEYQ+++LL+  +    ++E  L  L
Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++G    + + IDV I  LR+K+        YI TV G GY  R+
Sbjct: 185 WEGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKFRD 229


>gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 6   LRLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL + R  K   PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 66  SVLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ I +T  EY+++  L       +++   + HLYD
Sbjct: 126 GHAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL       + I+TV G GY+L     D
Sbjct: 186 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLAPPTTD 227


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ +EL LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREIK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|296161212|ref|ZP_06844021.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295888553|gb|EFG68362.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 212

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 130/214 (60%), Gaps = 2/214 (0%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +A  ++  L   ++ V +   G+DG+ L     FD I+LD+ L ++ GFEVLR LR  K 
Sbjct: 1   MASYLQKGLTEASYTVDIAGNGKDGLFLALHENFDLIVLDVMLPELNGFEVLRRLRAQK- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
            TPV +L+   ++EDKV GL+ GADDY+SKPF   E +ARIR+++RR+    + ++V  +
Sbjct: 60  HTPVLLLTARDTVEDKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPRGVRDVLVIAN 119

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V+L  + V   G RI LT +E+ +++LL+ R+   LT+    + ++D   + +  ++D
Sbjct: 120 LEVDLIRRRVHRGGTRIDLTAQEFALLQLLAERQGEVLTRTFITSQIWDMNFDSDTNVVD 179

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           V + ++R K+ N+   K  + TV G GYVL + +
Sbjct: 180 VAVKRVRAKIDNSF-DKKLLHTVRGMGYVLEDRS 212


>gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E  ++   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   +++   N +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGEQI---IEALEQNEWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  LR   I+TPV ILS   ++  ++ GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLNGLRDENINTPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  G+LS++  +  V  QG  I LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGNLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VF+ ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFVGRIRKKIA-----PKVIKTVRGLGYQL 216


>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/228 (40%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL  GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNH 177
           G A+ LI      + LD  T +V  H   + LT KEYQ++ ELLS      +T+E  +  
Sbjct: 121 GRAKVLIEHN--GIRLDPSTQQVSYHDAAVALTPKEYQLLYELLS-PPGRVMTRERLMQL 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY   +E E   ++V I  LRKK S+       I T+ G GY++ E +
Sbjct: 178 LYGWNEEAESNTLEVHIHHLRKKFSS-----TLIRTIRGVGYLVEERS 220


>gi|293603882|ref|ZP_06686297.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817719|gb|EFF76785.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 129/232 (55%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLK--SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MRIL+IEDD+ LA ++   L+      ++ +  L  DG+   ++  FD +ILD+GL  + 
Sbjct: 1   MRILVIEDDEDLADALVRRLRRLGHAVDLQIDGLSADGV--LQYETFDLVILDIGLPRMS 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF++L  LR     TPV  L+    IED+V  L +GADDY++KPF+  EL AR RA++RR
Sbjct: 59  GFDILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  +   GDL ++  A+ V + G RI L  +EY ++E+L    N  ++K    N L
Sbjct: 119 PIAQATGVQRFGDLVIDSAARHVSLAGQRIDLPKREYSLLEILLAGMNRAVSKTEIANKL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +   DE     I+V+I +LR+KL    G    IET  G GY+L      ++ 
Sbjct: 179 FAFDDEAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLLTSTTPPDST 227


>gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 128/219 (58%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  G+L ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI +LRKK+     G + I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSSIKTIRGLGY 214


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 135/225 (60%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +   L  E ++V V   G  G+E+     +D ++LDL L  I GFE
Sbjct: 3   RILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  + P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIRA +RR + 
Sbjct: 63  VARRIRAAS-NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  Q ++   +L+++  ++ + V   R+ LT KEY ++EL     N  LT+++  + +++
Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                E  II+V++  LR+KL  A G    I TV   GY+LRE+A
Sbjct: 182 YDFGGESNIIEVYVRYLRQKLE-ANGEPRLIHTVRSVGYILREDA 225


>gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL  +   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDGSVAFKP-IETVRGMGYLFNE 222


>gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
 gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 130/220 (59%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+      ++  L  E +   + D G DG+      ++D IILD+ L  + G++
Sbjct: 3   RILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 63  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 123 QTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNI 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +  +IDV + +LR K+ +    K  I TV G GY+L
Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDYEPK-LIHTVRGAGYIL 221


>gi|167584769|ref|ZP_02377157.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 203

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/202 (39%), Positives = 123/202 (60%), Gaps = 2/202 (0%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           ++ V V   G+DG+ L     FD I+LD+ L  I GFEVL+ LR  K  TPV +L+   +
Sbjct: 4   SYTVDVAGNGQDGLFLALHENFDLIVLDVMLPGIDGFEVLKRLRAQK-QTPVLLLTAREA 62

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
           IEDKV GL+ GADDY+ KPF   E +ARIRA++RR+  + + +++  DL V+L  + V+ 
Sbjct: 63  IEDKVTGLELGADDYLPKPFAYAEFLARIRALLRRAPRNVRDILLVADLEVDLIRRRVKR 122

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
              RI LT +E+ +++LL+ R+   LT+    + ++D   + +  ++D  I +LR K+ N
Sbjct: 123 GDARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDMNFDSDTNVVDAAIKRLRAKIDN 182

Query: 204 AAGGKNYIETVWGRGYVLRENA 225
           A   K  I T+ G GYVL + +
Sbjct: 183 AY-EKKLIHTIRGMGYVLEDRS 203


>gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
          Length = 221

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L+ ++ L LK+ N+ V     G D +      + D ++LDLGL D  G 
Sbjct: 1   MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R    + PV IL+    + DK+ GL +GADDY+ KPF  +EL+AR+R + RR  
Sbjct: 61  NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q++I   ++S++    T+ +    IHL  +E  +++ L       L+K    N LY+
Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V +  LRKK+ +     N+I+T+ G GY + ++ +
Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPD-----NFIKTIRGVGYCISKSGE 221


>gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL ++   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSSVAFKP-IETVRGMGYLFNE 222


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ +EL LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR LR   ++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGLDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLL 216


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   +  +   L+   F V V + GE+G++L    E+D IILD+ L  + G+
Sbjct: 1   MRILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K  TPV  L+   +++D+++GL+ GADDY+ KPF   EL+ARIR I+RR  
Sbjct: 61  QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI   DL ++L    V   G R+ LT KE+ ++ LL+ R    LT+      ++D
Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  ++DV + +LR K+ +    K  I TV G GYVL E 
Sbjct: 181 IDFESDTNVVDVHMRRLRAKVDDPFEHK-LIHTVRGVGYVLEER 223


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   ++  + ++ DA++LD+ L D  G 
Sbjct: 19  VRVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGM 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ 
Sbjct: 79  EVLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTT 138

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S+I  GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 139 VVADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDR 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+   AG    I T+ G GYVL+
Sbjct: 199 VWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTMRGVGYVLK 241


>gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   L ++ + V       +   L +  ++  I+LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GDL++NL ++ V ++   + +T KE+ ++  L +R    + +E     LY 
Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+KL     GK+ I+TV G GY L
Sbjct: 181 WNDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRL 216


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V +   GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228


>gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 223

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDL---GEDGIELCKFYEFDAIILDLGLT 55
           M++L++ED+K L     L L  E  N+  YVTD    GE+ ++L     +D IILD+ L 
Sbjct: 1   MKVLIVEDEKKL-----LRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLP 55

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              GFEVLR +R       + +L+  S I+D+VRGL  GA+DY++KPF+ +EL AR+R++
Sbjct: 56  KKDGFEVLRDIRQFNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSL 115

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR     ++ I+  DLS +   + V   G  + LT KE  +IE L L +   +T E  +
Sbjct: 116 LRRKSIMEETEIMINDLSFDTVKREVVYDGRILALTAKETGIIEYLFLNRQRYVTVEEIM 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            H++D   +     + V +  LRKK+  A  GKNYIE V G+GY + EN
Sbjct: 176 EHVWDSNADDFSNTVRVHMSSLRKKIKKAT-GKNYIENVIGKGYKIYEN 223


>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216


>gi|319424525|gb|ADV52599.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/209 (36%), Positives = 127/209 (60%), Gaps = 5/209 (2%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           ++++ V   GE+G+       +DA I+D+GL  + G  ++R++R  +   P+ IL+   S
Sbjct: 24  HYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGISLIRSVRQKERDFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A  L+  G  S+N  +  +  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFSLNTSSLEIRK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
               I+L+G EY++ E L L +    +K +   H+YD   + +  +I+VFI +LRKKL +
Sbjct: 144 GDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202

Query: 204 AAGGKNYIETVWGRGYVLR----ENAKDE 228
                N IET+ G+GY L+    E++ DE
Sbjct: 203 PDNQYNLIETLRGQGYRLKILAPESSADE 231


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK+  F  + T  G   + L     FD IILD+GL DI GFEV
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           L+ LR   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R  + G
Sbjct: 64  LQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDTTG 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +   D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 124 PDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 184 DFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB
 gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae
           Rd KW20]
 gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21]
 gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2866]
          Length = 221

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33]
 gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33]
          Length = 229

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G        +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+     G + IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGMGYRMRSGGEGEA 224


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L  + + V +   GE G E  +   +D I+LD+ L  + G 
Sbjct: 2   MRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 62  GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++     V      +HLT KEY ++EL    +N  L++   L++L+ 
Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I  LRKKL       ++IETV+G GY L++
Sbjct: 182 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 224


>gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 226

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 136/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   LK  +F V     G++G+ +    ++D +I+D  L  + G 
Sbjct: 1   MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      PV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI ++VRR+R
Sbjct: 61  SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++  V    DL ++L A+TV+  GH I +  +E++++E L       +T+ M L  +
Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+ +       ++T+ G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFETPLLQTIRGAGYMLRETA 226


>gi|303240444|ref|ZP_07326961.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592009|gb|EFL61740.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTD 56
           MRIL++ED+  LA ++ E+ML+    N Y+ D+   G DG++      +D I+LD+ L  
Sbjct: 1   MRILIVEDEIRLADTLREIMLE----NKYIVDVVYNGADGLDYAMTGVYDVIVLDVMLPK 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I GFEV++ +R  K+ TPV +L+    + DK+ GL SGADDY++KPF  +EL+ARIRA+ 
Sbjct: 57  INGFEVVKTMRKNKLQTPVILLTAKDEVSDKIAGLDSGADDYLTKPFVPDELLARIRALS 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR        +   DLS+NL    +E     +HL  KE++++ LL L     + KE  + 
Sbjct: 117 RRQGEIIMDSMQFSDLSLNLATYMLECGSKSVHLGYKEFEILRLLMLNPTMVVPKETLIT 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    + E   ++V+I  LRKK S   G K  + TV   GY L E
Sbjct: 177 RVWGDESDAEDNNVEVYISFLRKKFS-YLGSKATVSTVRKIGYFLEE 222


>gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus influenzae 10810]
          Length = 221

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LEVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +   L  E + V V   G  G+EL     +D I+LDL L  I G E
Sbjct: 3   RILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A  + P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIRA +RR + 
Sbjct: 63  VARRLR-ADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++   +L+++  ++ + V   R+ LT KEY ++EL     N  LT+++  + +++
Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  I++V++  LR+KL  A G    I TV   GY+LRE+
Sbjct: 182 YDFGGESNILEVYVRYLRQKLE-ANGEPRLIHTVRSVGYILRED 224


>gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda
           FL6-60]
 gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda]
 gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD+ +   I+  L    F + + TD G+ G+   +   +DA+ILDL L  I G
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTD-GQLGMTALESAPYDAVILDLSLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+
Sbjct: 60  LEILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY
Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              D+     ++V I  LR+KL     G ++I TV G GY L ++
Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTLGDS 219


>gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL  +   K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDGSVAFKP-IETVRGMGYLFNE 222


>gi|154496872|ref|ZP_02035568.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
 gi|150273830|gb|EDN00943.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
          Length = 263

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD  L  S++ + +   + V     G + +   +  E+D ++LD+ +  + G 
Sbjct: 40  MRLLVAEDDLKLLKSLKHIFEKNKYMVDAVSTGTEALAYAETEEYDGMVLDIMMPGLDGI 99

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR++R   ISTP   L+  + ++ +V GL +GADDY+SKPF+  EL+AR+RA++RR  
Sbjct: 100 AVLRSVRGQGISTPALFLTAKTEVDQRVEGLDAGADDYLSKPFSTSELLARVRAMLRRKD 159

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L+  G+L +N     +   G    L+G+E+Q++E+L  R N  +T + F++H++ 
Sbjct: 160 NYVPDLLRAGELVLNRSTYELSCNGQTQALSGREFQIMEMLLQRPNFIITTDAFMSHVWG 219

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +V ++ V I  LRKKL+ A      I  V   GY L +
Sbjct: 220 WDSEVDVSVVWVHISNLRKKLA-ALKAPATIRFVRNAGYTLEQ 261


>gi|221215180|ref|ZP_03588146.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
 gi|221164864|gb|EED97344.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL N+      I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLL 218


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA ++++ML+ + ++V +   GED +   +   +D I+LD+ +    G 
Sbjct: 1   MRILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR   I TPV +L+  S +EDKV GL+ GADDY++KPF   EL+AR+++++RR  
Sbjct: 61  EVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRPN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G++ +N D  T+     ++ L  KE+Q++E   +  N  L+ ++ +  ++ 
Sbjct: 121 VFVASVMTLGNVELNRDTFTMMTSKGQVLLNNKEFQLMEYFMMNSNQVLSTDLIMEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E+ ++ V I  LRKKL+        I++  G GY L
Sbjct: 181 LDSEAEINVVWVNISSLRKKLATIEADVT-IKSARGLGYQL 220


>gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603]
          Length = 219

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L + I   L + +   +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H
Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++      + I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQL 216


>gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 224

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +  GDL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 SHEPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V I +LR KL      K  + T+ G GYVL   A
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVLENRA 223


>gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 242

 Score =  143 bits (360), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 125/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-------FDAIILDL 52
           MR+LL+EDD  +  S+++ L+ E F V +V D G+ G++             +D ++LDL
Sbjct: 1   MRVLLVEDDAMIGESVKVALRQEGFTVDWVRD-GDAGLDAASDQHGPRADGGYDVVLLDL 59

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           GL   PG +VL+ LR   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+
Sbjct: 60  GLPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARM 119

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A+VRR+ G A+ ++  GD+ +N   +     G  + L+ +E+ ++  L  R     +  
Sbjct: 120 HALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVP 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                LY   DE     ++V+I  LR+K      G   I  + G GYV+
Sbjct: 180 QLQERLYGWDDEVGSNTVEVYIHALRRKF-----GAALIRNIRGVGYVI 223


>gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
 gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   LK     V +TD G+DG+ +    +FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    +TPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  VRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  A  Q+ +   DL ++L ++TV   G +I L  +E++++E L+      +T+ M L  
Sbjct: 121 RTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+     G   I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-GTPLIHTIRNAGYMLR 224


>gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     I   L+ E F V  +  G++G+ +    E+  I+LD  L +I G 
Sbjct: 1   MKILVIEDDQTTREFIAKALEQEGFIVDNSGDGKEGLMMAISCEYQLIVLDRMLPNIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + I   +L +NL ++ V +  + I L  KE+ ++  L+   N  +++       
Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +IDV I KLRKKL    G  N IETV G GYV+R+
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLEQ-GGAINLIETVRGAGYVIRQ 224


>gi|154247327|ref|YP_001418285.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161412|gb|ABS68628.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  ++   + ++     +VT L +D  E      F+ ++LDL L D  G
Sbjct: 1   MRILLVEDDPVLGMAVRDQIVADGHTPDWVTRL-DDATEAIHAAAFELVLLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L+ LRVA   TPV +L+    I D++  L +GADDY+ KPF+  EL ARIRA+ RR 
Sbjct: 60  LDFLKRLRVAGDVTPVIVLTARDQISDRIAALDAGADDYLVKPFDLFELSARIRAVGRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  GD+ V+L A++V   G  + LTG+E+ + E    R +  ++K      LY
Sbjct: 120 AGNPNPLVSFGDIEVDLAARSVWRAGRPVVLTGREWSLFEAFVQRPHQLMSKPQLEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V++ +LRKKL     G   IETV G GY L
Sbjct: 180 SFDAEVESNTIEVYVGRLRKKL-----GAQVIETVRGMGYRL 216


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 10  MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 232


>gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment']
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  ++  L  E   V + + G++G  L    ++D I+LD  L    G 
Sbjct: 1   MRLLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR   +STP+ +++   ++ D+++GL +GADDY+ KPF   EL+ARIRA++RR  
Sbjct: 61  QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DL ++  +  V   G  I LT KEY +IE L+ R    +T+     H+++
Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV I  LRKK+ +A    + I TV GRGY L E
Sbjct: 181 DEFDNLTNLVDVHISNLRKKI-DAGSTVSLIHTVRGRGYRLSE 222


>gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 238

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G E     E+DA++LDL L  + G 
Sbjct: 18  MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R   +  PV IL+   ++++++ G  SGADDY+ KPF   E+V R++A++RR  
Sbjct: 78  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  GDL+++     V +    I+LT KE+Q++ L +  K+  LT+      LY 
Sbjct: 138 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++     ++V+I  LRKKL     GK +I+TV G GY
Sbjct: 198 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGY 231


>gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  ++  +L++E + V +V D GE      +  ++D ++LDLG+    G
Sbjct: 1   MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKD-GEAAESALRTQQYDLVLLDLGVPRRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVLR+LR  K   PV I +   S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+
Sbjct: 60  LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +     +S+N   + V V G  + L+ +E+ +IE L  R    L++      LY
Sbjct: 120 AGRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +DE     ++V++  LRKKL     G  +I  V G GY++
Sbjct: 180 SWKDEISSNAVEVYVHGLRKKL-----GAEFIRNVRGVGYMV 216


>gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae L20]
 gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G E     E+DA++LDL L  + G 
Sbjct: 1   MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R   +  PV IL+   ++++++ G  SGADDY+ KPF   E+V R++A++RR  
Sbjct: 61  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  GDL+++     V +    I+LT KE+Q++ L +  K+  LT+      LY 
Sbjct: 121 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++     ++V+I  LRKKL     GK +I+TV G GY
Sbjct: 181 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGY 214


>gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
 gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 130/224 (58%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L + I   L + +   +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDVQLGNQI---LSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H
Sbjct: 118 RASGNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++      + I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PDVIKTVRGLGYQL 216


>gi|288939775|ref|YP_003442015.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895147|gb|ADC60983.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD A   ++   L +  F V     G  G  L +   +D I+LDLGL   PG 
Sbjct: 1   MRLLLVEDDPAQIAALLPALNAAGFAVDQAQDGAIGERLGETEPYDVIVLDLGLPKRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R   +S PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+ A+ RR+ 
Sbjct: 61  EVLRHWRARGLSLPVLILTARDAWPERVDGLKAGADDYLGKPFHVEELIARLNALTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G+ +  +  G LS++ D + V    G    LTG E++++  L L     L+K   L H+Y
Sbjct: 121 GNLRPALAVGGLSLDADRQQVICPDGEVRELTGTEFRLLRYLMLNPGRILSKAQLLEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   E    +I+V+I +LR+K+     G++ I+T+ G+GY+L+
Sbjct: 181 ELEAERGDNLIEVYIRRLREKI-----GRDRIQTLRGQGYLLK 218


>gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
 gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA  +   L   N+ V V   G DG       ++D ++LD+ L  + GF
Sbjct: 1   MRILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  K  TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+ARI+A++RR R
Sbjct: 61  GVLADLRKHK-QTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+   DL ++L  +  +  G R+ LT KE+ ++ L+  R    L++ +    ++D
Sbjct: 120 GQESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +    K  + TV G GYVL
Sbjct: 180 MNFDSDTNVIEVAVRRLRAKIDDPFETK-LLHTVRGMGYVL 219


>gi|317402058|gb|EFV82653.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 261

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL+IEDD+ LA ++   L+      +  D  +DG+    + ++  FD +ILD+GL  +
Sbjct: 30  MRILVIEDDEDLADALVRRLRRLG---HAVDCQKDGLSADGVLQYETFDLVILDIGLPRM 86

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFE+L  LR     TPV  L+    IED+V  L +GADDY++KPF+  EL AR RA++R
Sbjct: 87  SGFEILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLR 146

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R    A  ++  GDL ++  A+ V + G RI L  +EY ++E+L    N  ++K    N 
Sbjct: 147 RPSVQAAGVLRFGDLVIDSAARQVSLAGQRIDLPKREYSLLEILLGGMNRAVSKAEIANK 206

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+   D+     I+V+I +LR+KL    G    IET  G GY+L+
Sbjct: 207 LFAFDDDAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLLK 248


>gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD+ +   I+  L    F + + TD G+ G+   +   +DA+ILDL L  I G
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLNKMGFTLDWFTD-GQLGMTALESAPYDAVILDLSLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+
Sbjct: 60  LEILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY
Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D+     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 223

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I+  L  E+++V     GE+ ++  +   +D ++LD+ L    GF
Sbjct: 1   MRILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R     TP+ +L+    IED+V+GL  GADDY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL+++ D + V   G  I L+ KE+ ++E L   +N  +T++    + ++
Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    +IDV+I  LRKK+ +A   K  I TV G GYV+RE
Sbjct: 181 YDYEGGSNVIDVYIRYLRKKI-DAGYEKKLIHTVRGTGYVMRE 222


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4]
 gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4]
          Length = 219

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L++   N +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGEQILATLEN---NGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL AR+RA +R
Sbjct: 58  DGLTVLRGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+   ++  GDLS++  +  V  QG  + LT  EY+++          +++   + H
Sbjct: 118 RASGNPSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 VYKQDFDRDSNTIEVFIGRIRKKIA-----PKIIKTVRGLGYQL 216


>gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
 gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 134/224 (59%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L+ E F    T+ G++G+ +    ++  IILD  L ++ G 
Sbjct: 1   MKILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   +L++NL ++ V +  + + L  KE+ ++  L+   +  +++       
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I KLRKKL N +G  + IETV G GYVLR
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLDN-SGAVDLIETVRGAGYVLR 223


>gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 222

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   +STPV +L+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLQEWRAGGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V      I LT  E++++    L     L+K    +HLY
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V + +LR KL     G+N IET  G+GY
Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGY 215


>gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
 gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ +A+ +   LK   + V     G +         +D +ILDLGL  +PG 
Sbjct: 1   MRILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  K + PV IL+    +E++VRGL +GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G LS +   +  ++ G  + L+ +E  ++E+ +LR    ++K+  ++HL  
Sbjct: 121 GQPRC-IEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKKL ++      I TV G GY L
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCL 217


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 133/226 (58%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +   I   L+ EN++V     G++ ++     E+D +ILD+ L  + GF
Sbjct: 8   MRILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+   S++D+V+GL  GADDY+ KPF+ EEL+ARIR I+R++ 
Sbjct: 68  EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + S   +    +L+V+ +  TV     RI L+ KE+ ++E +   K   ++K+    H
Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +YD   E    +I+V I  LRKK+      K  I T+ G GYVL+E
Sbjct: 188 IYDFDSEINSNVIEVHIRLLRKKIDTDFTPK-LIHTIRGVGYVLKE 232


>gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+       +TD G+DG+ L    +FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    +TPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q+ +V  DL ++L ++TV   G +I L  +E++++E L+      +T+ M L  
Sbjct: 121 RTEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+     G   I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-GMPLIHTIRNAGYMLR 224


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G DG+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +R S+ 
Sbjct: 64  VLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQN 123

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + + +    G LS+N   + V   G  I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  +R+KL   A     I+TV G GYVL+EN
Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLE-IANATPIIQTVRGVGYVLKEN 227


>gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-12]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 134/226 (59%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MR+LL+EDD+ + + +   L      V   + G++G+ L    +FD IILD  L   + G
Sbjct: 1   MRVLLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPGGVEG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ LR    +TPV +LS ++ +++KV GL++G DDY++KPF+  EL AR+ A+VRR+
Sbjct: 61  LHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  A  Q+ +  GDL ++L ++ V+  G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +P+  +IDV I +LR+K+         + T+   GY+L+E
Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKIDRPF-HHPLVHTIRNAGYMLQE 225


>gi|307721598|ref|YP_003892738.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979691|gb|ADN09726.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
          Length = 218

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+ +   ++     + + V     GEDG  L     +D II+D  L    G 
Sbjct: 1   MKLLIIEDDENILSFLKRGFDEDGYIVDSALDGEDGEYLAGMNSYDVIIMDWMLPYKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ ++LR  KI+TP+ ILS    IEDKV GLQ GADDY++KPF+ +ELVAR+ A+ RR  
Sbjct: 61  EITKSLREKKITTPILILSAKGEIEDKVTGLQHGADDYLAKPFSYKELVARVEALHRRDI 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +LI  G++ +N D KTV      I L+ KEY+++  L   KN  ++  M    L++
Sbjct: 121 SNGVNLITLGNIIINSDTKTVRKDDENIELSAKEYELLLFLIKHKNGFVSNAMIEEQLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++     +I V I  LRKKL     GK +I++  G GY
Sbjct: 181 NQEYINSNVIQVTIYHLRKKL-----GKEFIKSNRGIGY 214


>gi|167834881|ref|ZP_02461764.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 225

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E F V     GE    + K   +DA++LD+ L  + G 
Sbjct: 1   MKLLLVEDNAELAHWIIDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDL      +  +  G  + L  +E+ ++E L L++  T++K   ++ +Y 
Sbjct: 121 GVGVTQLACGDLVYLFATREFQCGGVPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LS   G    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219


>gi|126656210|ref|ZP_01727594.1| Multi-component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126622490|gb|EAZ93196.1| Multi-component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 609

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+  +  +  +LK ++F V V   G++G++    +++D IILDL L  I G 
Sbjct: 1   MKILLIEDDQLTSEYLAAVLKDDHFVVDVVFNGQEGLDYATLWDYDVIILDLQLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR  K  TP+ IL+     +    GL +GADDY+ KP +  +L+ARIRA+ RR  
Sbjct: 61  SLCRQLRSKKKQTPILILTACQETDKISIGLNAGADDYVLKPCDPPQLIARIRALTRRGN 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S ++T G LS+NL +  V  +   I+L  +EY ++EL         ++ + +NHL+
Sbjct: 121 NISSSSVLTWGQLSLNLVSAQVTYKQQVINLRNQEYHLLELFLRHPQRIFSRSLIINHLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  D P    +   +  LR K+  A   ++  ET++G GY L
Sbjct: 181 ETGDIPSESAVTNLVKDLRNKIKAAGMEEDMFETIYGLGYRL 222



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 14/118 (11%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56
           I++++DD  +  +I  +L    F +  T L E    + +F+        D +ILDL +  
Sbjct: 492 IMIVDDDPIIVTTIRKILHPWGFQI--TGLSE----VNQFWNILTQTNPDLLILDLEMPT 545

Query: 57  IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           I G E+ R +R  K   + P+ +++  + I+   +  ++GA+D++SKP  K ELVAR+
Sbjct: 546 INGIELCRVVRQDKKYATLPIIVVTAHTEIKYLQKSFEAGANDFLSKPIIKSELVARV 603


>gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 226

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 136/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   L+  +F V     G++G+ +    E+D +I+D  L  + G 
Sbjct: 1   MKALVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R     TPV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI +++RR+R
Sbjct: 61  SIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++  V    DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QAAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+ +       ++TV G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTVRGAGYMLRETA 226


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E +   V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREEK-NTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNNNHQTTVKYQDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRQELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDAKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
 gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
          Length = 257

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L  SI   L+ + + V + D G + +E+ +  ++D I+LDL L  + G 
Sbjct: 29  LKILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     T V ILS  SS+ D++ GL +GADDY+ KPF   EL ARIR ++RR  
Sbjct: 89  DLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRREY 148

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H ++ +V+G+L ++  ++ V  +   ++LT KE  ++E L  R  T ++ E  L+H +D
Sbjct: 149 THGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAWD 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +P    + V I  +RKKL     G + I    G GY L+E++ D+
Sbjct: 209 SNVDPFSNSVRVHIFSVRKKLREVL-GYDPISNKVGEGYYLKEDSDDK 255


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 130/224 (58%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +EL LK E + V   + G  G+E     +FD IILD+ L  + G E
Sbjct: 5   KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR     TPV +L+    + DKV GL  GADDY++KPF  EEL+ARIRA+++R + 
Sbjct: 65  VLRRLRQVS-ETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H + +I  GDL +NL+  +V      + LT KEY ++  L   KN  LT++  L  ++
Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  ++DV+I  LR K+ +    K  I TV G GY++++
Sbjct: 184 GYDYYGDTNVVDVYIRYLRSKIDDRFNTK-LIHTVRGVGYIIKD 226


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED  +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227


>gi|120600316|ref|YP_964890.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291755|ref|YP_001182179.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560409|gb|ABM26336.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563445|gb|ABP74380.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424991|gb|ADV53065.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L + +   LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVNELAKQLKLAG---YVTDITDKALEADYLIKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G   +    +  G ++++   +TV+V  H   LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNTPSKQLTYGGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L  S++  L+  +  V +   GED + +     +D +ILD+ L  + GF
Sbjct: 1   MRILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+ +  +E +V+GL  GADDY++KPF   EL AR+RA++R  R
Sbjct: 61  EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLR--R 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G   S      + + LD +T EV+     I L  KEY ++E      +  L++ M + H+
Sbjct: 119 GGPVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DG  E    +IDV+I  LR+KL N     N I+T+ G GY L+E
Sbjct: 179 WDGDTEHLSNVIDVYIRYLRRKLCN-ENEPNVIQTIRGSGYQLKE 222


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 134/234 (57%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ IEL K  E+D ++LD+ L    G+E
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGK 121

Query: 120 -----RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                R  A+S +I  GDL ++ +++ V +    I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 SKRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L +++  +  D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R  A
Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYFRVKA 235


>gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
 gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans]
 gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
          Length = 230

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  + L L+ E + V VT  G  G+E     +FD I+LDL L ++ G+EV
Sbjct: 5   ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMDGYEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R L++ K +T V I++   SI D V GL  GAD YI KPF  EEL+AR+RAI RR    
Sbjct: 65  IRRLQLEK-TTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDIE 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++  +++     DL +++  +     G  I LT +E+ ++  L    N  +T+E  L  
Sbjct: 124 KAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLAR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GY++REN
Sbjct: 184 VWKYDQEAETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYIIREN 229


>gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 229

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 132/229 (57%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  I G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVMLPGIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALREQR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + S +   DLS++L ++ V   G R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +++V I +LR KL      K  + T+ G GYVL   A  E
Sbjct: 180 DINFDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAE 227


>gi|220920110|ref|YP_002495411.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219944716|gb|ACL55108.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED + +  +I   L++    V     G  G  + +   +D +ILD+ L  + GF
Sbjct: 1   MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  +  TPV +L+  S ++D+V  L  GADDY+ KPF+  EL AR+RA++RR  
Sbjct: 61  AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G+LS++  A++  V G  + LT +E+ +IE+L+ R      K   L+ L  
Sbjct: 121 GHADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLST 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EP    ++  + +LR+KL+  AG +  I T+ G GY
Sbjct: 181 FEEEPSENALEQIVARLRRKLAQ-AGAEPEIRTLRGLGY 218


>gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
 gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +    +  I TV G GYVL E 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEER 224


>gi|238783257|ref|ZP_04627282.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
 gi|238715850|gb|EEQ07837.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
          Length = 251

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 26  MRLLLVEDEEKTSSYINRALSELGFTVDVAANGTDGLYLALEYDYDTIVLDVMLPGMDGY 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 86  SVLQGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 144

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 145 SDGADVTQLHIDDLHLDLLARRVTRGGARLELTAKEFALLSLLARHQGEILSKMMIAEQV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 205 WDMNFDSDANVVEVAIKRLRAKM-DAPYPVKLLHTVRGMGYVL 246


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 133/231 (57%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ +EL K  E+D ++LD+ L  + G+E
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSK 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + +        S+I  GDL ++ +++ V +    I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 NKRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L +++  +  D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 232


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  ++  ++  L+ E F V +   G+ G+++    E+D +I+D  +  I G 
Sbjct: 1   MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A  S P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  +RR+ 
Sbjct: 61  EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  G ++VN     V  +   I LT KE+ ++E L+  K+   T+   + H+ D
Sbjct: 121 PESDA-ITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  IIDV+I  LRKKL + +G  N I+T+ G GY++RE+
Sbjct: 180 MHFDSDTSIIDVYINFLRKKL-DCSGCGNIIQTIRGVGYIIRES 222


>gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 227

 Score =  142 bits (358), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 137/228 (60%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALA-HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+IEDDK +A H ++ + ++ +    V D G DG+       +D +I+D  L ++ G
Sbjct: 1   MRILVIEDDKEVAAHLLKGLREAGHVADSVAD-GRDGLFQAAGEAYDLLIVDRMLPNVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++R LR +  + PV ILS +  ++D+V+GL++G DDY+ KPF   EL+ARI A+ RR+
Sbjct: 60  LTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRT 119

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G    Q+ +  G++ ++L A+ V      I L  +E++++E L    +  +T+ M L +
Sbjct: 120 AGSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLEN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  ++DV I +LR+K+      + ++ETV G GYVLR N 
Sbjct: 180 VWDYHFDPQTNVVDVHISRLRRKMDEGF-AQPFLETVRGAGYVLRTNG 226


>gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain-containing protein
           [Herbaspirillum seropedicae SmR1]
 gi|300075473|gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain protein [Herbaspirillum
           seropedicae SmR1]
          Length = 222

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +E +LK   F V +   GE   ++ +   +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR      PV IL+   SI++KV  L +GADDY+ KPF   ELVARI+ +VRR  
Sbjct: 61  NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G+L  + + +   V G  + L  +E+ ++E+L LR+  T++K   +  ++ 
Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +EP    I+V+I +LRKKL  +      I T+ G GY+LR+
Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAA---IMTLRGLGYLLRQ 220


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V   + GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGINGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
 gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
          Length = 224

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED+  L   + + L    ++V     G++G+     Y +D  I+DLGL  I G 
Sbjct: 1   MRALIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R  R +    PV +L+  SS +DKV GL+ GADDY+ KPF  EE+VAR  A+VRR+ 
Sbjct: 61  DVIRRWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G + ++ + K V +    + LT  EY+++E L +     ++K +   H+Y 
Sbjct: 121 GITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +   I+VFI +LRKKL      K  IETV G GY
Sbjct: 181 QDFERDSNTIEVFIGRLRKKLDPDNQWKP-IETVRGMGY 218


>gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 196

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 120/192 (62%), Gaps = 1/192 (0%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           GE+ +E  ++ E+D +ILD+ +  I GFEV++ LR    +T V +L+   S +DKV+GL 
Sbjct: 4   GEEALEYLEYGEYDLVILDVMMPKINGFEVVKELRSKGNNTSVLMLTARDSADDKVKGLD 63

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152
            GADDY+ KPF+  EL ARIRA+VRR  G++ + I   DL ++   K+V   G +I LTG
Sbjct: 64  MGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKKIDLTG 123

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           KEY+++E L   KN  L+++  +  ++    E +  IIDV I  +RKK+ +   GK  I 
Sbjct: 124 KEYEILEYLVQSKNRILSRDQIIERVWGYEYEGDSNIIDVLIKNIRKKI-DIEDGKQIIF 182

Query: 213 TVWGRGYVLREN 224
           T  G GYV++E+
Sbjct: 183 TKRGMGYVVKED 194


>gi|293603268|ref|ZP_06685698.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818329|gb|EFF77380.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 223

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRILL+ED+  L  ++E  L+S   +V       DG+   ++     +DA++LD+ L   
Sbjct: 1   MRILLVEDNLDLGDAVESKLRSAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF V+R LR A +  PV +++  + IEDK+  L  GADDY+ KPF+  EL AR+RA++R
Sbjct: 58  DGFSVIRELRAAGLEAPVLVMTARAEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   S    G+LS++L  ++V + G  + L  +E++++E+L  R   T+ KE  +N 
Sbjct: 118 RPAGQTSSTTSYGNLSLDLAGRSVTLAGAPVELGRREFRLLEILVGRIGQTVAKERLMNQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+D  D+  +  +++ I +LRKKL   AG    I TV G GY  R +
Sbjct: 178 LFD-LDDGSLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSH 220


>gi|254563439|ref|YP_003070534.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254270717|emb|CAX26722.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  I   L+   +   +   GE      +   +DA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPRIAADISEGLERAGYVAEIVGDGEAAWFQAETETYDAMVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A ++ PV IL+      ++V G+ +GADDY+ KPF  EELVAR+RAI+RR+ 
Sbjct: 61  GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G + ++   + V V G    LT  EY+++  L  R+   +     L+HL+ 
Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++  + +LR+KL     G   IET  G GY++
Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216


>gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2]
          Length = 228

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    +  I TV G GYVL E
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEE 225


>gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 220

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY ++  L        T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
 gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++EDD+ L H +   ++      YV+D   DG E   L     +DA+ILD+GL  I
Sbjct: 1   MRILIVEDDRNLHHQLAEAVRRAG---YVSDSAFDGEEAYFLGSTESYDAVILDIGLPYI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+   R    S PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++R
Sbjct: 58  DGIRVVEKWRQEGHSMPVLMLTARDRWSDKVHGIDAGADDYVVKPFHLEEVMARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA S +  G++ ++     V V G  I LT  E++++  L    +  +++     H
Sbjct: 118 RATGHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LYD   + +   ++VF+ +LRKKL     G + IET+ G GY +R
Sbjct: 178 LYDQDFDKDSNTVEVFVGRLRKKL-----GVDLIETIRGMGYRVR 217


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+ +L   I   LK E ++V   + G D +E     E+D +I+D+ + ++ G 
Sbjct: 1   MKILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   ++ PV  L+ +   EDKV+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  ++ +   DL ++  A TV   G  I LT KE+ ++E L   +   L+++  L H 
Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   E    ++DV+I  LRKK+ +    K  + TV G GYVL+E
Sbjct: 181 WDFSYEGASNMVDVYIKTLRKKIDHDFEPK-LLHTVRGAGYVLKE 224


>gi|83814493|ref|YP_446590.1| PhoP3 response regulator [Salinibacter ruber DSM 13855]
 gi|83755887|gb|ABC44000.1| PhoP3 response regulator [Salinibacter ruber DSM 13855]
          Length = 246

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 130/236 (55%), Gaps = 4/236 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61
           +L++EDD  L+ S+ L L+SE + V + + GE  +E   +   +D I+LD  L D+ GFE
Sbjct: 11  LLVVEDDSELSTSLLLYLESEGYEVTLAETGETALEEATRLPGYDLIVLDAKLPDLSGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR  R   + TPV +L+G+   E K+RG Q GADDY++KPF  EELVARI  ++RR   
Sbjct: 71  VLRQSRDDGVRTPVLMLTGLGDHEHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAE 130

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                     G L V+L+   V   G  + LT  EY+++  L  R+  T T+E  L  ++
Sbjct: 131 ATDETGTFRVGGLRVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           D   E E + ID  +  LR  +   A  +  I++V+G GY L E A+  T    ET
Sbjct: 191 DLPTEVETRTIDRHVNALRDVMDGEAEDEWPIQSVYGIGYKL-EGAERTTGSEQET 245


>gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 223

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L+S  + V     G +       +EFD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLPKLHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    S PV IL+   SIE +V+GL  GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G LS +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPIRIATVRGLGYCL 218


>gi|311103838|ref|YP_003976691.1| response regulator 1 [Achromobacter xylosoxidans A8]
 gi|310758527|gb|ADP13976.1| response regulator 1 [Achromobacter xylosoxidans A8]
          Length = 223

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRILL+ED+  L  ++E  L+    +V       DG+   ++     +DA++LD+ L   
Sbjct: 1   MRILLVEDNLDLGDAVESKLRFAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF V+R LR A +  PV +++  S IEDK+  L  GADDY+ KPF+  EL AR+RA++R
Sbjct: 58  DGFTVIRELRAAGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   SL V G+LS++L  + V V G  + L  +E++++E+L  +   T+ KE  +N 
Sbjct: 118 RPAGQTSSLTVYGNLSLDLANRNVSVAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+D  D+  +  +++ I +LRKKL   AG    I TV G GY  R + +
Sbjct: 178 LFD-LDDGTLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSHEQ 222


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + + +  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L +   +DAI+LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R      PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V G ++ LT  E++++  L       +++   + HLYD
Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDET 229
              + +   I+VF+ +LRKKL         I+TV G GY+L   E  + ET
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLD-----VEVIQTVRGLGYLLVPPEAPRQET 226


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 134/224 (59%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+A+A+ ++  L+ E + V  +  G++G+E  K Y+F   ++D+ L ++ GF 
Sbjct: 4   KLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ ILS   +  DKV+GL+ GADDYI+KPF+  E+ AR+ A +RR R 
Sbjct: 64  LCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYRK 123

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++LI  G      DL +  + K V + G    +T KE+++++L++   N   +KE   
Sbjct: 124 MDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEELY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++D  D      + V I +LR+K+ +++    +I+TVWG GY
Sbjct: 184 HHVWDSIDLDGNNTVTVHIKELREKIGDSSKNPIFIQTVWGTGY 227


>gi|163853512|ref|YP_001641555.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218532370|ref|YP_002423186.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240140930|ref|YP_002965410.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163665117|gb|ABY32484.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524673|gb|ACK85258.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240010907|gb|ACS42133.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  I   L+   +   +   GE      +   +DA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPRIAADISEGLERAGYVAEIVGDGEAAWFRAETETYDAMVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A ++ PV IL+      ++V G+ +GADDY+ KPF  EELVAR+RAI+RR+ 
Sbjct: 61  GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G + ++   + V V G    LT  EY+++  L  R+   +     L+HL+ 
Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++  + +LR+KL     G   IET  G GY++
Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216


>gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 226

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +    +  I TV G GYVL E 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEER 224


>gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57
           MR+LL+EDD  L   I   L    F V   D  +DG   EL    E +DA++LDLGL  +
Sbjct: 1   MRVLLVEDDPLLGDGIRAGLMQAGFAV---DWAKDGREAELAVSGEPYDAVVLDLGLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           PG ++LR  R +K   P+ IL+   S+ D+V GL +GADDY+ KPF+  EL AR+RA+VR
Sbjct: 58  PGMDMLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R++   + +I  G L ++   ++V + G  + L+ +E+ ++  L L     L+K      
Sbjct: 118 RAKSQIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +E E   ++VF+  LR+KL+      + I TV G GY++
Sbjct: 178 LYGWGEEIESNAVEVFVHHLRRKLA-----PDLIRTVRGVGYMI 216


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYDGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|226954227|ref|ZP_03824691.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|294650125|ref|ZP_06727506.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835034|gb|EEH67417.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|292823975|gb|EFF82797.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 219

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   + +++D ++LD GL    G 
Sbjct: 1   MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+++R   + TPV  ++    I D+V GL  GA+DY+ KPFN EEL AR+R+ +R+ +
Sbjct: 61  QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DL ++  AKT+      ++LT KE+Q++  L  + +   T+E     LY 
Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+VFI ++RKK+     G  YI+TV G GY + +
Sbjct: 181 WGDEIESNAIEVFIYQIRKKI-----GGQYIKTVRGLGYRMHQ 218


>gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++ELL L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 225

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD++ A  +   LK E  +      G  G+EL    ++DA+++D  L  + G 
Sbjct: 1   MKVLVIEDDRSTADYVTGGLKEEGHDPDHAASGPIGLELACTRDYDAMVIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR +   TPV  L+ +S ++D+V GL++GADDY+ KPF   EL+AR+ A+ RRS 
Sbjct: 61  SIVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRSP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL +NL A+TV  +G  + L  +E++++E +   +   LT+ M L  ++
Sbjct: 121 MRREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  + +LR K+         I+T+ G GYVL
Sbjct: 181 DFHFDPRTNVVETHVSRLRGKVDRPF-STEMIKTIRGSGYVL 221


>gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
 gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
          Length = 227

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +  ++   L+   + V     G D +E C   E+D ++LDL L  + G 
Sbjct: 1   MRLLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  +    V ILS  S + DK+RGL SGA DY++KPF+ EEL ARIR ++RRS 
Sbjct: 61  EVLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L ++ + KT   QG  +  + +E+ ++E L +     ++ E  L H++D
Sbjct: 121 IQTEAALTRGGLCLDSNLKTASFQGRPLEFSMREFSILEYLMIHMGRPVSAEELLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +P    + V+I  +R+KL  A   +  I ++ G GY++  + ++E C
Sbjct: 181 SEADPFSNQVKVYISVIRRKL-QAVTDEEIIRSIRGAGYLI--DKEEEEC 227


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +   +   ++ +N+ V V   G +G+     Y +D  I+DLGL +I G 
Sbjct: 1   MRILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR      P+ IL+  S  +DKV GL++GADDY+ KPF  EE+ ARI A++RRS 
Sbjct: 61  TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  G L++N  +K   +    + LT  EY  +E L+      ++K     HLY 
Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +  +I+VFI +LRKK+ +       I TV G+GY
Sbjct: 181 QDFERDSNVIEVFIGRLRKKI-DPDNQLKAIVTVRGQGY 218


>gi|16119733|ref|NP_396439.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15162323|gb|AAK90880.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 221

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDDK +A S+ + L +  F   ++  GED     +   FDA+ILDLGL  + G 
Sbjct: 1   MRVLVAEDDKRIAQSLSVALAAAGFVTELSANGEDAWFRGETEAFDAVILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R    +TPV IL+      ++V G++SGADDY+ KPF  EE+VAR+RA+VRR+ 
Sbjct: 61  TILKRWRRDGRATPVLILTARGDWSERVEGIESGADDYVVKPFRMEEVVARVRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G  +++   K V + G  + L+ +EY+++  ++ R    +++     HLY 
Sbjct: 121 GFSSPIITIGQYTLDTRLKQVSMGGLPVALSPQEYRLLAFMAHRPGKVVSQLEITEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+     ++V + +LR++L     G + I T  G GY+L  +A
Sbjct: 181 QDDDRLSNAVEVLVGRLRRRL-----GADIIITRRGLGYLLGGHA 220


>gi|188583782|ref|YP_001927227.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347280|gb|ACB82692.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 224

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  I   L+   +   +   GE      +   +DA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPRIAADIREGLERAGYVAEIVGDGEAAWFRAETETYDAMVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A ++ PV IL+      ++V G+ +GADDY+ KPF  EELVAR+RAI+RR+ 
Sbjct: 61  GVLRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G + ++   + V V G    LT  EY+++  L  R+   +     L+HL+ 
Sbjct: 121 GHASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++  + +LR+KL     G   IET  G GY++
Sbjct: 181 SDSDREANALEALLTRLRRKL-----GPGIIETRRGHGYLV 216


>gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae
           86-028NP]
 gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           86-028NP]
          Length = 221

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMAALTSASYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +E     +DV I  LR+KL     GK +I TV G GY L +  K
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQVEK 221


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L+ E + V     G   +   + +  DAI+LD+ L D+ GF
Sbjct: 20  IRVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR  
Sbjct: 80  EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S +V GDL ++ DA  V      I LT  E++++  L       L+K   L+ 
Sbjct: 140 MAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++     +  ++++++  LRKK+   AG    I TV G GYVLR  A+
Sbjct: 200 VWNYDFGGQSNVVELYVSYLRKKID--AGYAPMIHTVRGAGYVLRPAAE 246


>gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 228

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 63  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    +  I TV G GYVL E
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLIHTVRGMGYVLEE 225


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQI 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H  SL    DL + ++++T+      I LT KE++++ +     N  LT+++ L+ +
Sbjct: 123 ENKHVSSLTFK-DLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 633

 Score =  142 bits (357), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 1/230 (0%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD      +   L + ++NV V   G+ G++L + Y +D  +LD+ +  + G  V + 
Sbjct: 1   MEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGISVCQQ 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR   +  P+ +L+   S  D++ GL +GADDYI KP N E L+ARIRA++RR      S
Sbjct: 61  LRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSS 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
           +I  G+L +NL    V  +   IHLT KEY ++EL  +       + + L  L+D  + P
Sbjct: 121 VIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESP 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             + +   I  LR+KL N AG  + IETV+G GY LR+  + +T   L T
Sbjct: 181 GEETVSTHIKCLRQKLKN-AGVSDPIETVYGLGYRLRKADEIDTSPNLST 229



 Score = 46.6 bits (109), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYV-TDLG-EDGIELCKFYEFDAIILDLGLTDIP-- 58
           IL+I+DD ALA  + +  ++ N N+ + TDL     I L K      IILDL        
Sbjct: 389 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAI--IILDLNFDSASED 446

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF +L  L  ++ + P+ I +G  S+ D+++  + GA  ++ KP    +++  +  I+  
Sbjct: 447 GFTLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKPLAAHQILKTVTDILHE 506

Query: 119 S 119
           +
Sbjct: 507 N 507


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 135/232 (58%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   ++  L+   + V     G  G++L K   FD IILDL L ++ G +
Sbjct: 4   RLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR +K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RR  G
Sbjct: 64  VCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRV-G 122

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           HAQ          S +  G++ +  D   V ++G  + LT KE++++  L+  K   LT+
Sbjct: 123 HAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  LN +++     + +I+DV I  LR+K+        YI+T+ G GY L E
Sbjct: 183 DQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEE 234


>gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVMLPDLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR A+++ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R+++R  R
Sbjct: 61  QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLR--R 118

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A SL   I   DL ++L  +     G RI LT KE+ ++ELL+ R    L + +  + 
Sbjct: 119 GSAPSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +IDV I +LR K+ +    K  I TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKIDDNFEPK-LIHTVRGMGYVL 221


>gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++L++ED+  L H +   L      V  V + GE   ++ +F   D  ++DLGL  I G
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQF-NHDLAVIDLGLPGIGG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS
Sbjct: 60  LDLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY
Sbjct: 120 SGFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|332284350|ref|YP_004416261.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330428303|gb|AEC19637.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +T  G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEIKTGDYVRQGLIESGFVVDLTRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK STPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q  +   DL +++  +  + Q  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APAFQDQLQVADLVLDIPRRRAQRQNVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDYEPK-LIHTVRGMGYML 221


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+K L   +E +L  E ++V + D G  G+EL +   +D +ILD  L    G 
Sbjct: 1   MRILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR    +TPV  L+   +I+D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ + +     G  I L+ KE Q++ L        LT E    H
Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+   ++P   ++   +  LR+K+  A G    I TV+G+GY   EN
Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIE-ADGETPLINTVYGKGYRFGEN 226


>gi|66046740|ref|YP_236581.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257447|gb|AAY38543.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330973569|gb|EGH73635.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 220

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+A+   I + L +E + +   + G   +   +   FD ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   ++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N LY 
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +D+ E   ++V I  LRKKLS        I TV G GY+L   A
Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220


>gi|150392423|ref|YP_001322472.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952285|gb|ABR50813.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L+  I   L+   + V     GE+ +E  + YE+D IILDL +  I G 
Sbjct: 1   MKILLIEDEEMLSAIIAKGLRKVGYAVDTVFDGEEALEYYEIYEYDIIILDLNIPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R       + ILS  + +++++ GL  GA+DY+ KPF+  EL ARIR ++RR+ 
Sbjct: 61  NVLRTIRKKDTDQKILILSARTKVDERILGLDEGANDYLIKPFDFGELEARIRNLLRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I+  +  V+++AK V      ++LT KEY + E L L KN T++ E  + H++D
Sbjct: 121 SGTPTTIMLDNFIVDINAKRVICDNDVLNLTRKEYNIFEYLILNKNKTISAEQLVEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    +   I  L+KKLSN +  +  I+T+ G+GY++ E
Sbjct: 181 SEFDPFSNTLRYHIHTLKKKLSNFS-NEEVIKTIRGQGYIIEE 222


>gi|162421230|ref|YP_001606897.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
 gi|162354045|gb|ABX87993.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
          Length = 230

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 133/231 (57%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 RDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+      K  + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKIDTPYPVK-LLHTVRGMGYVLETRPDRQT 229


>gi|307545835|ref|YP_003898314.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307217859|emb|CBV43129.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 223

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ LA ++   L      +  T  G +   L +   +DA+ILDLGL D  G 
Sbjct: 1   MKVLLVEDDEPLAEALSAALAEAGVLIEATASGTEADFLVQTERYDAVILDLGLPDGDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R A I  PV +L+      DK  G  +GADDY++KPF   E++ R+RA+VRRS 
Sbjct: 61  RWLAQWREAGIDLPVLVLTARERWADKAAGFSAGADDYVTKPFETAEVLFRLRALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  GDL+++    +V + G  I LT +E +++  L       +++     H+YD
Sbjct: 121 GHAHPILRVGDLALDTHTGSVTLAGRPISLTSQESRLLAYLVHTAPRVVSRAELAEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              EP+  +IDV I +LR+KL     G   IET+ G+GY L
Sbjct: 181 RDHEPDSNVIDVQISRLRRKL-----GSQRIETLRGQGYRL 216


>gi|171912348|ref|ZP_02927818.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 231

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L IED   L  ++   L      V      E+G +L +   +DA+ILD+ L    G 
Sbjct: 1   MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R  ++ TPV +L+ + S+ED+VRGL +GADDY+ KPF   EL AR+ A+VRR  
Sbjct: 61  ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S I  G L ++  A+TV   G+ + LT +E+ +++ L+       ++E     LY 
Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D P    +D  +  LR+KLS   G    I T  G GY+L
Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLS-PPGVPQLIHTRRGLGYLL 220


>gi|311695828|gb|ADP98701.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 223

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 122/219 (55%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ALA  +   L +    V V + G     L     +D +ILDLGL D  G 
Sbjct: 1   MKVLLVEDDRALAEGLAAALSNAGLLVEVAEDGRSADFLVSTERYDVVILDLGLPDGSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L   R   I  PV IL+      DK  G  +GADDY++KPF   E++ R+RA++RR+ 
Sbjct: 61  QWLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEVLFRLRALMRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I  G+++++  A  V   G  + LT +E++++  L       +++     H+YD
Sbjct: 121 GHAHPMITVGEIALDTHAGQVTRAGMPVALTAQEFRLLSRLIHAAPRVVSRTELSEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  EP+  +IDV + +LR+KL     G   IETV G+GY
Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL-----GGESIETVRGQGY 214


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 138/228 (60%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S+ H Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  
Sbjct: 122 EDGNSKEH-QTTVNYKDLTIEKENRIVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 181 LSKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo]
 gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99]
 gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99]
 gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo]
 gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99]
 gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +      +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 136/228 (59%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     GE+ + L K  ++D I+LD+ L  + G+E
Sbjct: 3   KVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTGYE 62

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V +A+R  + ST P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RRS 
Sbjct: 63  VCQAIR--EFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSV 120

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            HA       +I +  L ++ D++ V + G  ++LT KE+ ++ELL    N   ++E  L
Sbjct: 121 SHAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 180

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++ G D P + + +DV I +LR+K+    G  +Y+ T WG GY  +
Sbjct: 181 NTVW-GYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 227


>gi|322436892|ref|YP_004219104.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164619|gb|ADW70324.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 233

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++ ++   LKS  + V      EDG+ L      D I+LDLGL  + G E
Sbjct: 8   RILVVEDERKISEAVTAGLKSAGYEVLAARTVEDGLFLLHSQHPDMIVLDLGLPGMSGME 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  PV IL+  +S++D+V  L  GADD++ KPF+  EL AR+RAI RR R 
Sbjct: 68  MLRQLRAMGIMIPVLILTSNNSLDDRVAALDLGADDFLLKPFSTAELNARMRAISRRGRP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-- 179
              + +   DL +NL+ +TV   G ++ LT +E+ +I      +  T+++EM    ++  
Sbjct: 128 TQVAQLSVADLEINLETRTVVRGGMQLELTAREFDLIVYFVGNRGRTVSREMLARDVWHE 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             R  P   +IDV I +LR+KL +    K  + TV G G++L E
Sbjct: 188 TSRFTPIDNVIDVQITRLRRKLDDPFPQK-LLRTVRGVGFILGE 230


>gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR      PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  GD+ ++ +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  E   ++V I  LRKK  +     + I  + G GY++ +
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIVPQ 218


>gi|254253937|ref|ZP_04947254.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158]
 gi|124898582|gb|EAY70425.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPLLAQSLTDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LR+KL N       I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRRKLENTGVS---IVTLRGLGYLLEAKA 222


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L +F E +   +ILDL L  + G
Sbjct: 6   ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R    + P+ IL+    IEDKV GL +GADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 63  IEVAKRIRKTS-NVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++
Sbjct: 122 SPAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL  AAG +  I TV G GYVLRE+
Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKLE-AAGERRLIHTVRGVGYVLRED 224


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD      +      E F V     G +G+       FDA++LD  L  + G  
Sbjct: 4   RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++++R A ++TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL+AR+ A++RR + 
Sbjct: 64  LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++   DL ++L  + V   G  I LT +E+Q++E    RKN  +T+ M L  ++D
Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   I+DV I KLR+++   A     I TV G GY++ + 
Sbjct: 184 YHFDPNTNIVDVHISKLRRQIDEGA-EVPLITTVRGAGYMISDG 226


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +AH ++L L    F V     G  G+   +    D +ILDLGL D+ G E
Sbjct: 3   RILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +RV     P+ +L+   S+E KV  L  GADDYI KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIRVGA-EVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  G+L V+L  + V   G  + L+ KE++++ LL  R     ++     HL+  
Sbjct: 122 GEQ--VTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             E +  ++DV +  LR KL   +G   Y+ TV G GY LR+  K+
Sbjct: 180 SLERDSNVVDVHVANLRSKLRE-SGAYGYLRTVRGVGYALRQRDKE 224


>gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 225

 Score =  142 bits (357), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  L   +   L+   + V     GEDG  +     +D ++LDLGL  + G 
Sbjct: 1   MRALVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV G  +GADDY++KPF+ EEL+AR+RA+ RR+ 
Sbjct: 61  TVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + I  G LS++     V + G  + +T  E++M+  L+  ++  +++   + H+YD
Sbjct: 121 GHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKK+     G + IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GTDRIETVRGLGYRL 216


>gi|120596934|ref|YP_961508.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557027|gb|ABM22954.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 231

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 121/199 (60%), Gaps = 1/199 (0%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
           ++++ V   GE+G+       +DA I+D+GL  + G  ++R++R  +   P+ IL+   S
Sbjct: 24  HYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGISLIRSVRQKERDFPILILTARDS 83

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEV 143
            +DKV GL +GADDY++KPF+ +ELVAR++A++RRS G A  L+  G  S+N  +  +  
Sbjct: 84  WQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSAGKASPLVYNGPFSLNTSSLEIRK 143

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
               I+L+G EY++ E L L      +K +   H+YD   + +  +I+VFI +LRKKL +
Sbjct: 144 GDELINLSGSEYKLFEFLMLHPGEVKSKTVLTEHIYDQDFDLDSNVIEVFIRRLRKKL-D 202

Query: 204 AAGGKNYIETVWGRGYVLR 222
                N IET+ G+GY L+
Sbjct: 203 PDNQYNLIETLRGQGYRLK 221


>gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRILL+EDD  +   +   L+     V   D G+DG+ L     +D +ILD  L   I G
Sbjct: 1   MRILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR  K +TPV +LS ++ ++++V GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRG 120

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  +  Q+ +V GDL ++L ++TV+  G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D   +P+  +IDV + +LR+K+      K  I T+   GY+LR +
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPF-DKPMIHTIRNAGYILRAD 226


>gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 225

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    E   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ AL  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K  +V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 130/223 (58%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD   A  +E     + + V  T  G +G+ L    ++DA++LD  L  + G  
Sbjct: 4   KILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRMLPGLDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+A+R A + TPV ILS M +++++VRGL++G+DDY+ KPF   EL ARI A++RRS  
Sbjct: 64  VLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSAA 123

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +V  DL ++L ++ V   G  I L  +E+QM+E L       +T+ M L  +
Sbjct: 124 GTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR+K+         I TV G GY+L
Sbjct: 184 WNYHFDPQTNVIDVHISRLRQKVDKDFDSP-LIHTVRGSGYML 225


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + +E+      D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR  +   PV +L+   S  DK+ GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRSLR-QRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+    S++  G + +++D   V V+G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 DAEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV I +LR K+        YI TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGY 222


>gi|83719158|ref|YP_440599.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167617392|ref|ZP_02386023.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|83652983|gb|ABC37046.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E F V     GE    + K   +DA++LD+ L  + G 
Sbjct: 1   MKLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  ELLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDL      +  +     + L  +E+ ++E L L++  T++K   ++ +Y 
Sbjct: 121 GVGATQLACGDLVYLFATREFQCGSVPLALRRREHAILETLMLQQGKTVSKARLMDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK LS   G    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLS---GSLAQIITLRGLGYILR 219


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  +EL LK + +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREVK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  GIE     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175
           GHA          DL ++   +TV      I LT +EY +  LL+L +N    +T+E  +
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX]
          Length = 219

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L +  F   V D     I+      FD ++LDLGL D  GF 
Sbjct: 3   RILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDADGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      P+ IL+   S+ D V GL++GADDY++KPF  EEL+ARIR  +R +  
Sbjct: 63  VLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAHN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  GDL+++L  +        + LT +E+ ++EL        L+++  L+H++  
Sbjct: 123 AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DVFI  LRKK+     G + IET+ G GY L
Sbjct: 183 DYDPGSNVVDVFIRALRKKI-----GAHRIETLRGMGYRL 217


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/227 (38%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  +EL LK E +   +   G  G+E  +   +D I+LDL L +I G E
Sbjct: 8   RILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR      P+ I++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 68  VCRRLRPTS-DVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DLSV  + + V      I LT +EY+++ +L    N  L +   L
Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E E  ++DV+I  LR K+ +  G   YI+TV G GYV+R
Sbjct: 187 NKVWGYTTEVETNVVDVYIRYLRNKI-DVDGQPGYIQTVRGTGYVMR 232


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ ++ +I   L  +++ V V   G++  EL   + +D I+LD+ L  + G 
Sbjct: 1   MKILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +++   ++ED+V GL  GADDY+ KPF  +EL AR+RA++RR  
Sbjct: 61  TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  +  V  Q   I L+ KEY ++E     ++    +   L HL+ 
Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               PE   +   I  LR+KL       + IETV+G GY L+E  +
Sbjct: 181 FERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRLKERPE 226


>gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA  +EL L+ E +  +V D G  G++     ++D I+LDL L ++ G EV
Sbjct: 4   VLVIEDEVNLARFVELELQHEGYETHVEDNGRGGLQAALDNDYDLILLDLMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K +TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 64  ARRLREVK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRINIE 122

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  H+  QS++   DL+V  + +        I+LT +EY+++ +L    N   ++E  L 
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREELLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    + E  ++DV+I  LR K+       +YI+TV G GYV+R+
Sbjct: 183 KVWGYDSQIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229


>gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
 gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
          Length = 221

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTD-GKTGMVALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LDVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH  S+I    + ++ + + V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 YGHHHSVIEQSGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +E     +DV I  LR+KL     GK +I TV G GY L +  K
Sbjct: 180 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYALGQVEK 221


>gi|315924256|ref|ZP_07920480.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622417|gb|EFV02374.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ +L+ ++  +LK     V V + G  G ++     +D I+LD+ L ++ G 
Sbjct: 1   MRVLLVEDEVSLSAALAKLLKKNKIEVDVANDGASGKQMADRDIYDVIVLDIMLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL+ +R      PV +L+   S +DKV+GL  GADDY+ KPF  +EL+ARIRA+ RR+ 
Sbjct: 61  TVLKHIRQTGKKVPVLLLTAKDSTQDKVKGLNMGADDYVVKPFETDELIARIRALGRRAG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +A ++I   DL ++  +  + +   ++ LT KE QM+EL  L    T+ K+  L  ++
Sbjct: 121 EQYADNVIQYADLVLDTTSGELSIGTKKVRLTAKESQMLELFILNPEQTIAKKALLERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     +++++  LRKKLS   G K  I+T+ G GYVL+ +
Sbjct: 181 GNDGKAAENSVEIYVHYLRKKLS---GAKVTIKTLRGMGYVLKRD 222


>gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 219

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLSEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  QVLSQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
 gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
          Length = 651

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  L   +   L + ++ V V   GE G      +E+D IILD+ L ++ G 
Sbjct: 1   MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R    + P+ +L+   +I  KV+GL +GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L+  GDL +N     V   G  ++LT  EY ++ELL        + E  L+ L+ 
Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D P    +   + +LR KL  A    ++I T+ GRGY L+  + +E
Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTEE 228



 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD+    ++  +LK   F V      +    + +    DA++LD+ +  I GFE
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR        PV  LS ++    + +    G DDY+ KP    EL  RI   ++R 
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQRV 646

Query: 120 RGHA 123
           R  A
Sbjct: 647 RAWA 650


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S I  G+L+++  +  V + G  + L+ +E+ ++  L  R    L+K      +Y 
Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220


>gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813]
          Length = 219

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD+ +   I+  L    F++ + TD G  G+   +   +DA+ILDL L  I G
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFSLDWFTD-GLQGMTALESAPYDAVILDLSLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+
Sbjct: 60  LEILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY
Sbjct: 120 HGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D+     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 180 SWDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 219

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  ++  +L++E + V +V D GE      +  ++D ++LDLG+    G
Sbjct: 1   MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKD-GEAAESALRTQQYDLVLLDLGVPRRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVLR+LR  K   PV I +   S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+
Sbjct: 60  LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +     +S+N   + V V+G  + L+ +E+ ++E L  R    L++      LY
Sbjct: 120 AGRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +DE     ++V++  LRKKL     G   I  V G GY++
Sbjct: 180 SWKDEISSNAVEVYVHGLRKKL-----GAELIRNVRGVGYMV 216


>gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score =  141 bits (356), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    LS++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  SI   L+ + + V + D G + +E+ +   +D I+LDL L  I G 
Sbjct: 1   MKILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S++ D++ GL +GADDY+ KPF   EL AR+R ++RR  
Sbjct: 61  ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL  +   + +  +G  I LT KE  ++E L   K   ++ E  L+H +D
Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    + V IC LRKKL +  G  + I    G GY L E
Sbjct: 181 SSVDPFSNSVRVHICSLRKKLRSVLGC-DPISNKIGEGYYLTE 222


>gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 219

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   IE  L+   F V +  D  + G+ L     +  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR LR A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR+
Sbjct: 60  MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  +I   +LSVN  A+ VEV G R+ LT +E+ ++  L   +    ++      LY
Sbjct: 120 QGRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++E E   I+V +  LRKKL     G + I TV   GYV+
Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAHLIRTVRNIGYVV 216


>gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 218

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L ++I   L   ++       GE  +   +   F  +ILD+ L  I G 
Sbjct: 1   MRVLLVEDDPMLGNAITASLARHHYTADWVTSGESALHALQTDSFLLVILDISLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR     TPV ILS    + D+V GL  GADDY+ KPF  EEL+AR+ A++RRS 
Sbjct: 61  KVLKELRSKGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV GD+SV++++  V V G  I+LT  E++++  L       L+K   L +++ 
Sbjct: 121 GMADDTIVVGDVSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   +  I+V I  LRKK+      K  IE + G GY+++ 
Sbjct: 181 WDESAGLNSIEVHIHNLRKKMP-----KGTIENIRGVGYIIQH 218


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 134/228 (58%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+        I  G ++++ +       GHR+ LT KE++++   + R   TL+++  
Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++ G D P E +++D+ +  LR K+       +Y++TV G GY +
Sbjct: 183 LNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 229


>gi|15807318|ref|NP_296048.1| response regulator [Deinococcus radiodurans R1]
 gi|6460139|gb|AAF11874.1|AE002064_5 response regulator [Deinococcus radiodurans R1]
          Length = 220

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A      L+   + V     G +G+E     EF  ++LD+ L  + GF
Sbjct: 1   MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   LR A++ +P+  L+    + D+V+GL  G D Y+ KPF   EL+A++RA+ RR R
Sbjct: 61  EIAGQLREAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRER 120

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +   +        LD  A+TV   G  + +TG+EY+++  L+L     LT+E  L+ +
Sbjct: 121 GQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E +I+DV++  LR+KL+  A     I +  GRGY
Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKLAPEA-----ISSERGRGY 216


>gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565]
 gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565]
          Length = 228

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++  L+   + V     G   +   K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMQDALRHSGYTVDWLQQGLPALAALKSDEFAALILDLNLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR      PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  GD+ +  +++ V  QG  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  E   ++V I  LRKK  +     + I  + G GY++ +
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIIPQ 218


>gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 128/236 (54%), Gaps = 19/236 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEQCLESGHYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  GDL++N+  + V   G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHHNQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L   A +E+
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATATEES 224


>gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++  L    F V     GE  +       F A++LDLGL    G 
Sbjct: 1   MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+    +EDKVRGL  GADDY+ KPF+ +E+ AR+RA++RR+ 
Sbjct: 61  SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  L+  GD+ ++  A++V  +G  + LTG+E+ ++ +L       LT+ M    LY 
Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +      ++V +  LR+KL N     + I TV G GY+
Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGN-----DVIRTVRGVGYM 215


>gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
 gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  I+DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE +  +I+V + +LR+KL   +G K  I+TV G GY+  E  +
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPSGFKP-IDTVRGLGYLFNERCR 225


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 133/225 (59%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  +   L+ E ++V     G+  + L +    D I+LD+ L DI G 
Sbjct: 23  LRVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R  +   PV  L+   S+ED+V GL +G DDY++KPF+ EE+VAR+R ++RR+ 
Sbjct: 83  EVLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAG 142

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   ++ +V GDL+++ D+  V+  G  IHLT  E++++  L       ++K   L+ 
Sbjct: 143 ASAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I++++I  LR+K+   AG +  I T+ G GYVL+
Sbjct: 203 VWQYDFGGQANIVELYISYLRRKID--AGREPMIHTLRGVGYVLK 245


>gi|167565398|ref|ZP_02358314.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167572502|ref|ZP_02365376.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 223

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +      I++++ +LRKKL    G    I T+ G GY+L    +
Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLLEAQPR 223


>gi|289674391|ref|ZP_06495281.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 220

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR LR   ++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGLDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V  +G  + +T  EYQ++  L +R    +T+E   N 
Sbjct: 118 RSQGRAQPLLEHAGISLDPTSQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY  +D+ E   ++V I  LRKKLS        I TV G GY+L   A
Sbjct: 178 LYGWQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220


>gi|222106554|ref|YP_002547345.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737733|gb|ACM38629.1| two component response regulator [Agrobacterium vitis S4]
          Length = 218

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  S++   +   + V +   GE G+   +  ++  +ILD+ L    GF
Sbjct: 1   MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR +    PV +L+ + SI  +V GL  GADDY+ KPF+ +EL+AR+RA+ RR  
Sbjct: 61  EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++LI  G++ ++  A      G  +H+ GKE+ +++LL  R    +TK      LYD
Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   I+V I  LRKKL     G ++I+++ G GY++
Sbjct: 181 ISAMVESNTIEVTIYSLRKKL-----GADFIKSIRGVGYMV 216


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  +I TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V+G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEK 228


>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
          Length = 235

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDKA+ + I + L++EN+  +V + GE  I     Y  D +ILDLGL D+ G E
Sbjct: 5   QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR   
Sbjct: 65  IIKRIRTWS-NVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G   +L + GDL ++  A+ V ++   +HLT  EY++I LL+      LT    L
Sbjct: 124 VNSGQGKNSNLFINGDLKIDYAARCVFIKDEEVHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + VF+  LRKK+        YI+T  G GY
Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGY 227


>gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR    + PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G+L +  +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  E   ++V I  LRKK  +     + I  + G GY++ +
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIVPQ 218


>gi|126668876|ref|ZP_01739820.1| DNA-binding response regulator [Marinobacter sp. ELB17]
 gi|126626661|gb|EAZ97314.1| DNA-binding response regulator [Marinobacter sp. ELB17]
          Length = 221

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ LA  +   L+   F+V VT   ++ + L    ++ A +LDLGL D  G 
Sbjct: 1   MRLLLVEDDRLLAEGLASQLEKAGFSVDVTGTAKEAMLLGVQEDYRAAVLDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R    +  V IL+     +DKV GL++GADDY+ KPF  EEL+AR+ AIVRRS 
Sbjct: 61  DVLRKWRQDNANFAVLILTARGDWQDKVSGLKAGADDYLGKPFQAEELIARLNAIVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S +  G   ++ + + +++     H LTG E++++  L  R     +KE  +  LY
Sbjct: 121 GRVLSSVKAGHFELDENRQCLKIDNGPEHSLTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  + P   +I+ +I +LRK +     G   IET  G+GY+  +
Sbjct: 181 NLTESPNENVIEAYIRRLRKLV-----GPETIETRRGQGYLFND 219


>gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +   DL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 SHEPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V I +LR KL      K  + T+ G GYVL   A
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVLENRA 223


>gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
 gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
          Length = 225

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +   LK     V     G+DG+ L     +DA+++D  L    G 
Sbjct: 1   MKILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      P  +LS +SS+ED+V+GL++GADDY+ KPF   EL+AR+ A+ RR+R
Sbjct: 61  SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + +   DL ++L A++V   G  + L  +E+ ++E L       +T+ M L  ++
Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR+K+         I TV G GYVLR
Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDHPAP-LIHTVRGAGYVLR 222


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  LK+  F + V + G D ++     +FD +ILDL L    GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR      P+ IL+    IEDKV GL+ GADDY++KPF   EL+AR+RA +R    
Sbjct: 63  ILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + ++  GD+ ++L  +  +V    I L+ KE+Q++E L       +++E  L+ +
Sbjct: 123 SPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL     G N IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GGNRIETVRGMGYRL 220


>gi|186471275|ref|YP_001862593.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184197584|gb|ACC75547.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 228

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    G 
Sbjct: 1   MKLLIVEDEFKVVDYLRRGLTEQGWVVDVALDGEEGLHLASEFDYDIIVLDVMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K M    ++D
Sbjct: 120 VQESTLICVGDLYVDLIGRRATRGGVRLDLTAKEFQLLSVLARRQGDILSKAMITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAK 226
              +    +++  I +LR KL      K  + T+ G GYVL  RE A+
Sbjct: 180 VNFDSHTNVVETAIKRLRAKLDGPFPTK-LLHTMRGMGYVLEVREEAE 226


>gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 221

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L     FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPSMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G LS++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              EP    ++ ++ ++R+KL    G    I T  G GY
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGY 216


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  F   + + G+D ++      FD +ILDLGL D  GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR    + P+ IL+    + DKV GL++GADDY++KPF   EL+AR+RA +R   G
Sbjct: 63  ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQTG 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   + T ++ +NL  + V+V    + L+ KE+ ++E         L++E  L+ +
Sbjct: 123 KPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL     G + IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GSDRIETVRGMGYRL 220


>gi|168334754|ref|ZP_02692882.1| hypothetical protein Epulo_07020 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 222

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 132/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K LA  +  ML+  N++V V   G   ++  +   +D +ILDL +  + G 
Sbjct: 1   MRILICEDEKQLADILVAMLQYNNYSVDVVGDGVSAVDYIETGNYDGVILDLMMPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R A +S PV ILS  S IEDK+ GL  GA+DY++KPF+  EL+ARIRA+ R++ 
Sbjct: 61  EVLKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    ++ G+ ++N+    + V   +I L  KE+Q++E+L  RK+  ++ +     ++ 
Sbjct: 121 QN-NIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E ++  I V+I  LRKKL  A      I+ V G GY + E
Sbjct: 180 YENEVDITTIWVYISNLRKKLV-ALSATVQIKVVRGVGYRMEE 221


>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 235

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDKA+ + I + L++EN+  +V + GE  I     Y  D +ILDLGL D+ G E
Sbjct: 5   QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR   
Sbjct: 65  IIKKIRTWS-NIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G   +L + GDL ++  A+ V ++   IHLT  EY++I LL+      LT    L
Sbjct: 124 VNGGQGENSNLFINGDLKLDYAARCVFIKDEEIHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + VF+  LRKK+        YI+T  G GY
Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGY 227


>gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7c]
          Length = 224

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIP- 58
           MRIL++ED+K LA +I   LK+E + + +     +G  +     +DA+I+D  +  D   
Sbjct: 1   MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++L+ LR   ISTP  +L+ +     K+ GL +GADDY++KPF  +EL+AR+RAI+RR
Sbjct: 61  GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +++  G L ++   +TVE    +I LT KEY +++ L      TL+KE  + H+
Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +     ++ +I  LRKK+      K YI+TV G GY L E
Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVK-YIKTVRGIGYRLEE 224


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  L++ + L L+ E +   V + G +G++     ++DAI+LDL L ++ G E
Sbjct: 3   RILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR +K STP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRLRQSK-STPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDF 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 ENDNGTTKQTTVTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYESQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
 gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
          Length = 234

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ L  S+   L         T  GE G+E  +  +FDAI+LDL L  I G 
Sbjct: 12  MHILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLMLPGIGGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR   I TP+ IL+ + S++D+V+GL  GADDY+ KPF   EL+AR+ A+ RR+ 
Sbjct: 72  EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G L+++L ++ V      I L+  E+ ++ELL       ++++M   HL+ 
Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +IDV I  LR+K+      +  I TV GRGYVLR
Sbjct: 192 QDWNGMTNVIDVHINHLRQKVDRGF-DEPLIHTVRGRGYVLR 232


>gi|330718114|ref|ZP_08312714.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 136/222 (61%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA SI   L+  + +V V + G DG    +   +D +I DL L    G 
Sbjct: 5   IKILLIEDDVNLADSIVGFLQDFS-DVKVVEDGLDGEFEAQEVPYDLVISDLMLPGQDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  +I TPV IL+  SS++DK+ G   GADDY++KPF +EEL+ R++A++RRS 
Sbjct: 64  TIIKNLREKEIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRSG 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + I  GD+ +NL+ + V+V G  + L GKE+ ++  L+  KN  +T+E   + ++
Sbjct: 124 VFSEDNTIEVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIITREQIFDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + ++++++  LR+KL  A G  N I+T+   G++L
Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQDNLIKTLRNIGFIL 224


>gi|163749364|ref|ZP_02156613.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161331083|gb|EDQ02009.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 224

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 12/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +E  LK   +   VTD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNALLVEELEKQLKLAGYVTDVTDKAAEADYLLKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   I TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A+++R+ 
Sbjct: 61  ELLERWRNQGIMTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120

Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A   + T +LS     ++ + ++V V+G    LT  E++++++  +     L+K    
Sbjct: 121 GKAS--LPTKELSFSGVVLDENQQSVSVEGKSFELTAMEFRLLKIFLMSPKKLLSKSQLS 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+ 
Sbjct: 179 DKLYQFDDEKESNVVEVYVTHLRKKL-----GKTTIETRRGQGYIF 219


>gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 228

 Score =  141 bits (355), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    + V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    +  I TV G GYVL E
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDF-PQRLIHTVRGMGYVLEE 225


>gi|24372213|ref|NP_716255.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24346128|gb|AAN53700.1|AE015509_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVSELEKQLKQAG---YVTDITDKALEADYLVKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G   +    +  G ++++   +TV V      LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNNPNKQLSYGGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 222

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   L+ E F V V   G +G+ +    E+D +I+D  L  + G 
Sbjct: 1   MRILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLPGLSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R  R      PV  L+    ++D + GL+SGA+DY+ KPF  EEL+ARIR  +R S 
Sbjct: 61  EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLS- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G + +NL A  V   G  + LT KE+ ++E L   + +  T+   + H++D
Sbjct: 120 GSETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV++  LRKKL  A  G   IETV G GYV+R
Sbjct: 180 IHFDADTSVIDVYVNFLRKKLDGAGCGA-LIETVRGVGYVIR 220


>gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 230

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A A  +   L    F V   D G DG+       +D +ILD  L  + G  
Sbjct: 4   KILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLPGMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL A+R A I TPV ILS + + ED+V+GL+ G+DDY++KPF   EL+AR+R ++R  +G
Sbjct: 64  VLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQG 123

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    ++ +   DL ++L ++ V   G  I L  +E++++E L       +T+ M L  
Sbjct: 124 RSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLEG 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +IDV + +LRKK+      +  + TV G GY L
Sbjct: 184 VWDYHFDPGTNVIDVHVSRLRKKIDEGQ-ARPLLHTVRGSGYRL 226


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   A  I   L+   +       G DG+        D  ++D+ L  + GF
Sbjct: 1   MKILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR A I  PV +LS  SS++DK+R LQ+G DDY+ KPF+  EL+ARI+A++RR+ 
Sbjct: 61  TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ S +  GDLS++L ++ V     RI +   E+ ++E L+      ++K M + H++
Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +P+  I++  +C+LR+KL      K  + TV G GYVL   A
Sbjct: 181 EYNFDPQTNIVETRMCRLREKLDKPFKEK-LLHTVRGFGYVLEPEA 225


>gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 228

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +V+++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL E+ +D
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPK-LIQTVRGMGYVL-EDPED 226


>gi|90414318|ref|ZP_01222297.1| Response regulator [Photobacterium profundum 3TCK]
 gi|90324656|gb|EAS41203.1| Response regulator [Photobacterium profundum 3TCK]
          Length = 218

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           MRILL+EDD  L  S+   L    + V     G +G+E+    E F AIILDL L D  G
Sbjct: 1   MRILLVEDDVMLGKSMVTSLSRHGYTVDWLQQG-NGVEVNLNTETFMAIILDLTLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVLR +R A  S P+ IL+    I+D+V+GL  GADDY+ KPF  EEL+AR+R ++RR 
Sbjct: 60  LEVLRRVRKAGHSLPILILTARDEIDDRVKGLDGGADDYLVKPFALEELLARLRVLIRRV 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH  + +  GDLS++L    V  QG+ + LT  E++++  L  +    L+KE     L+
Sbjct: 120 SGHTDTQLEIGDLSISLKTNDVHYQGNPVKLTKNEFKILATLVTQSGRVLSKESLQQVLH 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D      I+V I  LRKK+     G   I+ + G GY++
Sbjct: 180 GWDDLASDNAIEVHIHNLRKKI-----GGQLIKNIRGVGYII 216


>gi|149187893|ref|ZP_01866189.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
 gi|148838289|gb|EDL55230.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V  +  G DG+      +FD IILD+ L    GF
Sbjct: 1   MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + ++RR +
Sbjct: 61  EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120

Query: 121 GHA-QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + Q+L +  G L+++L   T++ +   I +  +E+ +++LL     T ++K   L H+
Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+ +       I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFATPLIHTLRGVGYVLK 223


>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     GE  +       +D ++LDLGL    G 
Sbjct: 6   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGV 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 66  EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 186 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 225


>gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 231

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY+SKPF+ EE++ARIRA++RR+ 
Sbjct: 61  AVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G  + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++R+KL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRRKLD-----VDIIQTVRGLGYLL 216


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59
           +L+IED+K +A  IEL L +E    Y TD+  DG+  L KF E   D ++LDL L  + G
Sbjct: 7   VLVIEDEKEIARFIELELGAEG---YTTDVAYDGVTGLSKFREVAPDLVVLDLMLPVLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 64  LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++
Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                PE      ++DV+I  LR+KL    G +  I TV G GYVLRE
Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  ++L L+ E +   +   G  G+E     E+D I+LDL L ++ G E
Sbjct: 7   RVLIIEDEKNLARFVDLELQHEGYETDIRHDGRSGLEAALDEEWDVILLDLMLPELNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 67  VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRI-D 124

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H + L VT        DL V    + V+     I LT +EY+++  L    N  ++++  
Sbjct: 125 HEEELRVTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++  + E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 185 LDKVWGYKSEVETNVVDVYIRYLRNKI-DVPGQESYIQTVRGTGYVMR 231


>gi|239833816|ref|ZP_04682144.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239821879|gb|EEQ93448.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 222

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA+ +   L+  N++V       D  +   F E+D +ILDLGL D  G 
Sbjct: 1   MRILLVEDNLTLANWLAKSLQQSNYSVDTVHDAADAEQALAFTEYDLVILDLGLPDKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R      PV IL+  +S++ ++RGL +GADDY++KPF   EL ARIRA +RR+ 
Sbjct: 61  DVLEHVRGKGNEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L  + + +   +    + L  KE+ ++E L  R  TT++K   +  +Y+
Sbjct: 121 QRTAPVVTCGLLRFDTNTRLFSIGDEPLSLAPKEHAVLEQLLRRIGTTVSKTALVQGIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +   I+++I +LRKKL    G +  I T+ G GY+LRE
Sbjct: 181 FDSETDENAIEIYIHRLRKKLE---GSRAEIVTLRGLGYLLRE 220


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  141 bits (355), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ +++++LK  N++V     G++  +      +D +ILD+ +  + GF
Sbjct: 1   MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R      PV +L+  S  +DK+ GL  GADDY++KPF+ +EL+ARIRAI RR  
Sbjct: 61  TVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + ++ GD ++N     +   G  + L  KEYQ++ELL   + + ++ E+ +  ++ 
Sbjct: 121 EAVSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E+ ++ V I  LRKKL    G K  I+ V  +GY L
Sbjct: 181 YDTDTEISVVWVNISYLRKKLGQ-IGSKVSIKAVRNQGYTL 220


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   + +   ++ DA++LD+ L D+ G 
Sbjct: 83  LRVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGL 142

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  +   PV  L+   ++ED+V GL +G DDY++KPF+ EEL AR+R ++RR  
Sbjct: 143 AVLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVH 202

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G     ++++  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 203 GTVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDR 262

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  ++++++  LRKK+   AG +  I T+ G GYVLR 
Sbjct: 263 VWNYDFGGQANVVELYVSYLRKKID--AGRQPMIHTMRGAGYVLRP 306


>gi|167950592|ref|ZP_02537666.1| two-component system regulatory protein [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 258

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 1/214 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L + +E  L+ E + V   D G DG+ L + Y  D  I+D+GL  + G 
Sbjct: 1   MRVLLVEDEAELRNPLEARLRREGYTVDAADNGRDGLFLGREYGIDVGIVDIGLPQLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A    P+ IL+   + +DKV GL++GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  EVIRQLRQAGKHFPILILTARGNWQDKVEGLEAGADDYLVKPFHVEELLARLNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +Q LI  G + +N  ++TV +Q   I LT  EY+++E + L     ++K     H+YD
Sbjct: 121 GWSQPLIECGPIELNTRSQTVCLQQQPIDLTAYEYKVLEYMMLHAGQVVSKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
              + +  +I+VF+ +LRKKL   A  K  IET+
Sbjct: 181 QDWDRDSNVIEVFVRRLRKKLDPDARYKP-IETL 213


>gi|209547341|ref|YP_002279259.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209538585|gb|ACI58519.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 222

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   + K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G+L  +   +   V    + LT +EY ++E L ++   T++K      ++ 
Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKVGNTVSKAALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I++++ +LRKKL +++     I T+ G GY+LR
Sbjct: 181 FDDEADPSAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219


>gi|325521131|gb|EGD00037.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 223

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPNLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSCVACGPLAYDSVDRSFRLADEALPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL N+      I T+ G GY+L
Sbjct: 181 LDESVNPDAIEIYVHRLRKKLENSGVA---IVTLRGLGYLL 218


>gi|332285068|ref|YP_004416979.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330429021|gb|AEC20355.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLLVEDETKTGDYVRQGLVESGFVVDLVRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK STPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q  +   DL +++  +  + +  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APAFQDQLQIADLVLDIPRRRAQRKSVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFDPK-LIHTVRGMGYML 221


>gi|219668333|ref|YP_002458768.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538593|gb|ACL20332.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
           +++  +LK  N++V   D G D ++      +D I+LD+ +  + G EVL  LR   IST
Sbjct: 14  NALTAILKHNNYSVDAVDNGADALDWALAGNYDGILLDIMMPKMNGLEVLAKLREKGIST 73

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           P+ +L+    IED++ GL  GADDY++KPF   EL+ARIRAI RR    A +L+  G+L 
Sbjct: 74  PILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGNLQ 133

Query: 134 VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
             LD    E+ G +  I L  KEYQM+E++    N  ++ E F+  ++    E E+ ++ 
Sbjct: 134 --LDRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWGYDAEAEINVVW 191

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           V+I  LRKKL+ A G    I+   G GY L ++
Sbjct: 192 VYISYLRKKLT-ALGSTVTIKASRGLGYTLEDS 223


>gi|116249330|ref|YP_765171.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115253980|emb|CAK12376.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 222

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   + K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G+L  +   +   V    + LT +EY ++E L ++   T++K      ++ 
Sbjct: 121 DRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKLGNTVSKAALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE +   I++++ +LRKKL +++     I T+ G GY+LR
Sbjct: 181 FDDEADPSAIEIYVHRLRKKLESSS---VQIATLRGLGYLLR 219


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223


>gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 135/228 (59%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +   LK     V V + G++G+ L     +D +I+D  L    G 
Sbjct: 1   MKILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  LS + S++D+V+GL++G DDY++KPF   EL+ARI  +VRR R
Sbjct: 61  SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRR-R 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  Q+ +  GDL ++L +++V+  G  I L  +E+ ++E L     + +T+ M L ++
Sbjct: 120 GAAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           +D   +P+  +IDV I +LR+K+      K++    I TV G GY LR
Sbjct: 180 WDYHFDPQTNVIDVHIARLRQKID-----KDFPTPLIHTVRGAGYSLR 222


>gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
          Length = 219

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGISLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL LK E + V + + G  G+E     + D ++LD+ L  + G E
Sbjct: 3   KILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120
           V R +R+     P+ +L+    + DKV GL  GADDY++KPF  EEL+ARIR A+ R S+
Sbjct: 63  VCRRIRMES-QVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   Q ++  G+L +NL + +       + LT KEY+++E L   KN  LT+E  LN+
Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D     +  ++DV+I  LR+K+ +   G + I TV G GY++R+
Sbjct: 182 VWDYEYFGDTNVVDVYIRYLRQKIDDKY-GVHLISTVRGVGYIIRD 226


>gi|84387151|ref|ZP_00990173.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
 gi|84378012|gb|EAP94873.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
          Length = 224

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 GH-AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q L +  G LS++L   T++     I +  +E+ +++LL   +   ++K   L H+
Sbjct: 121 QPTPQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+ +    K  I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223


>gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 231

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED   LA  I+  L ++ ++V +   GE G+++     FD I+LD+ L  I G E
Sbjct: 4   KILVIEDQSKLASLIQRGLSADGYDVRIASDGELGLDMIYHNAFDLIVLDVMLPGISGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +S+  + V GL SGADDY+ KPF  EEL ARIR +VRR+ G
Sbjct: 64  VCQLLRKENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRANG 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A S I   DL +++DA+     G  I LT  EY+++E +   KN  LT+   L
Sbjct: 124 TNGQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++D        ++DV++  LRKK+      K  I T+ G GY ++E
Sbjct: 184 EHVWDINFNMGTNVVDVYVNYLRKKVDKGFDVK-LIHTMIGVGYSIKE 230


>gi|86146208|ref|ZP_01064533.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
 gi|85835919|gb|EAQ54052.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
          Length = 224

 Score =  141 bits (355), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 -GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q L +  G LS++L   T++     I +  +E+ +++LL   +   ++K   L H+
Sbjct: 121 QPTTQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+ +    K  I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223


>gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
 gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE +  +I+V + +LR+KL   +G K  I+TV G GY+  E  +
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLEGPSGFKP-IDTVRGLGYLFNERCR 225


>gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis
           Tohama I]
 gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA  +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           PG EVLR LR      PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  PGLEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           L +  +E     I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL +
Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGASYLAS 229


>gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  L   ++  L+      Y TDL  DGIE     K   +D  ILDLGL   
Sbjct: 1   MRLLLVEDDPILGKQLQTSLQRAG---YATDLATDGIEAEIQGKLEPYDLAILDLGLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R A+I+TPV IL+     +DKV G  SGADDY+SKPF  EEL+AR+ A+++
Sbjct: 58  NGLEILAHWRSAQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLK 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS  +  S + +    +N   +++    G++  LT  E++++    L     L+K +   
Sbjct: 118 RSMLNRASELQSTQFKLNEHTQSIIFDDGNQQQLTNVEFRLLRYFMLHPGHILSKSVLTE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H+Y+  ++ +  +I+V+I +LR+K+     G  +I+T  G+GYV 
Sbjct: 178 HVYEYDEDKDSNVIEVYINRLRQKI-----GSQHIQTRRGQGYVF 217


>gi|71279444|ref|YP_268131.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea
           34H]
 gi|71145184|gb|AAZ25657.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea
           34H]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+AL   ++  L  +N++V V   GE  +     Y++D  ++DLGL  I G 
Sbjct: 1   MRLLLVEDDQALQQELQKQLLLQNYSVDVASDGEIALFQGLEYDYDIAVIDLGLPKIDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ALR    + P+ IL+     +DKV GL +GADDY++KPF+ EEL +R+ A++RRS 
Sbjct: 61  TVVKALREKGRNFPILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G  S+++    V V+   + L+  E+++ + L L     ++K     H+YD
Sbjct: 121 GKASTMINNGPYSLDIATSQVLVEQVSVSLSAHEFKVFKYLMLHVGEVISKTTLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL +     N+IET  G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DPDSKYNFIETKRGQGYRL 220


>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 222

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  + G 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDESRQCVSRDGVDVQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRTVLETRRGQGYL 216


>gi|288957332|ref|YP_003447673.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288909640|dbj|BAI71129.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 260

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 130/232 (56%), Gaps = 3/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED++ LA      L    F V +    ED         FDA++LDLGL D  G 
Sbjct: 1   MRLLLIEDNRRLATLTAEGLGKAGFAVDLVHSAEDASAALAVAAFDAVLLDLGLPDADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR    +TPV +L+    ++D+VRGL  GADDY+ KPF  EELVARIRA++RR  
Sbjct: 61  TLLSALRARADTTPVLVLTARDGVDDRVRGLNLGADDYLVKPFALEELVARIRALLRRP- 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  L++  G+++ + DA+   V G  + L+ +E   +ELL  R    ++K    N LY
Sbjct: 120 GAALGLVLQQGNVAFDSDARLASVAGRPLDLSRRELDALELLLRRAGRVVSKTALENGLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +E     ++V I +LRK+L  AAG    ++T+ G GY+L E   +   E
Sbjct: 180 GFGEEIGSNAVEVLIHRLRKRL-QAAGATAGVQTLRGIGYILTETPAETGPE 230


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175
           GHA          DL ++   +TV      I LT +EY +  LL+L +N    +T+E  +
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ IEL +  E+D ++LD+ L    G+E
Sbjct: 3   KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121

Query: 120 ----RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               R   Q+  +I  GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L +++  R  D  +V+ +DV + +LR+K+  +     ++ T WG GY
Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGY 229


>gi|297537645|ref|YP_003673414.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256992|gb|ADI28837.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 227

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  S    L+S+ + V     G+  I +     +DAIILD+GL  + GF
Sbjct: 1   MRILLVEDDTHLGESTARALRSQQWFVDWVRNGDSVINMIGLVSYDAIILDVGLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L +LR    S PV +L+   +I+D+V G Q GADDY+ KPF  +ELVARI+AI RR  
Sbjct: 61  EILHSLRSQNNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I+ G L ++L AK   +    + L  +E+ ++  +       ++KE  L  + D
Sbjct: 121 TRQHNEIIFGILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + P    I+V+I +LR KL+ A      I T+ G GY++ E+
Sbjct: 181 WDEAPSSNAIEVYISRLRTKLTPAGIS---IRTIRGFGYLIEES 221


>gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ ++  +LK  N+ V     G  G E+ +   +D IILD  L +  G 
Sbjct: 1   MRLLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIYDLIILDRMLPEKNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R   I TPV +L+ M SIE++V GL +GADDY+ KPF+KEEL+ARIRA+ RR  
Sbjct: 61  DILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRRHT 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   I    L+ N     +E  G++  LT KE Q++ELL+  KN  LTK+  L+ ++
Sbjct: 121 DFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQILDRVW 180

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + E+   I+V+   LRKKL         IET+ G GY L+E
Sbjct: 181 GLDSDIEMNNNIEVYFSYLRKKLRELKCNV-VIETIRGIGYCLKE 224


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  +A  I+  L+   F V     G +G+       + A I+D+ L +  G 
Sbjct: 1   MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R A   TPV ILS   S++D+++GLQ G DDY+ KPF+  EL+ R++A++RR +
Sbjct: 61  SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H+ Q+ +  G L ++L  + V   G +I L  KEY ++  ++    T L+K   L  +Y
Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P+  ++DV +C+LR K+     G+  I+T+ G GYVLR +
Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGF-GQQLIQTIRGVGYVLRSH 224


>gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 219

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNEAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K  +V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 228


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223


>gi|89893958|ref|YP_517445.1| hypothetical protein DSY1212 [Desulfitobacterium hafniense Y51]
 gi|89333406|dbj|BAE83001.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 122/213 (57%), Gaps = 5/213 (2%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
           +++  +LK  N++V   D G D ++      +D I+LD+ +  + G EVL  LR   IST
Sbjct: 21  NALTAILKHNNYSVDAVDNGADALDWALAGNYDGILLDIMMPKMNGLEVLAKLREKGIST 80

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           P+ +L+    IED++ GL  GADDY++KPF   EL+ARIRAI RR    A +L+  G+L 
Sbjct: 81  PILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGNLQ 140

Query: 134 VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
             LD    E+ G +  I L  KEYQM+E++    N  ++ E F+  ++    E E+ ++ 
Sbjct: 141 --LDRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWGYDAEAEINVVW 198

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           V+I  LRKKL+ A G    I+   G GY L ++
Sbjct: 199 VYISYLRKKLT-ALGSTVTIKASRGLGYTLEDS 230


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 233


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  LA  +  MLK E   V  +  GE   +L     FD +ILD  L    G 
Sbjct: 1   MHLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR    S PV +L+   +I+ K+ G ++GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  K V   G  I L+ KEYQ++E         LT E  L H++D
Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              EP   ++   +  LR+K+   A G   I TV+G+GY
Sbjct: 181 SGAEPNSNVVAAQVKLLRRKIDKDA-GTALIHTVYGQGY 218


>gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I   L+ + F V     GE      +   + A +LDLGL  + G 
Sbjct: 1   MRILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR++R   +  P+ +L+   ++ D+VRGL  GADDY+ KP + EEL AR+RA+VRR+ 
Sbjct: 61  DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +   D+ ++  ++ V   G  + L+ +E+ ++ +L L     L++E    HLY 
Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LR KL     G + I TV G GYVL
Sbjct: 181 WGQEVESNAVEVHVHRLRSKL-----GSDVIRTVRGIGYVL 216


>gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  I+  L  + F V V   G + + +   + +DAI+LD+ L  + GF
Sbjct: 7   MRLLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVMLPGLNGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR +   TP+ +L+ M    D+V+ L SGADDY++KPF+   L+AR+RA+VRR  
Sbjct: 67  AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  GDL V+  A      G  I LT KE+ ++ LL+ R    +TK   L H +D
Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V++  LR+K+ +A      + TV G GY+L
Sbjct: 187 FAFEGDPNIVEVYVSALRRKI-DAPFAVRTLTTVRGSGYLL 226


>gi|221196554|ref|ZP_03569601.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
 gi|221203223|ref|ZP_03576242.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221177157|gb|EEE09585.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2]
 gi|221183108|gb|EEE15508.1| DNA-binding response regulator TctD [Burkholderia multivorans
           CGD2M]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHSRVECGPLAYDSVDRSFRLADEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +      I++++ +LRKKL N+      I T+ G GY+L   A
Sbjct: 181 LDESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 222


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G DG+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +R S+ 
Sbjct: 64  VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQK 123

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + + +    G LS+N   + V   G  I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  +R+KL   A     I+TV G GYVL+EN
Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLE-IANVTPIIQTVRGVGYVLKEN 227


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 125/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   L+++N+ V  T  GE+ + L + Y +D  I+DLGL  + G 
Sbjct: 1   MKLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R      P+ IL+     +DKV GL++GADDY+ KPF+ EEL AR+ A++RR+ 
Sbjct: 61  EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH++ ++  G + ++   + V      + LT  EY+  E L L    T++K     HLY 
Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +++VFI +LR+KL +       I TV G GY
Sbjct: 181 QDFDRDSNVLEVFIRRLRQKL-DPDQDLQPITTVRGLGY 218


>gi|323494129|ref|ZP_08099245.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
 gi|323311756|gb|EGA64904.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + +   +   D G DG+       +D I+LD+ L +  GF
Sbjct: 1   MKILLIEDDAHIARFLINGFQQQACTITHADNGVDGLHEAVTQAYDVIVLDIMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V GLQSGADDY+ KPF   EL AR +++ RR +
Sbjct: 61  EVLAQLRGEGHTTPVIILSAKHSVEERVLGLQSGADDYLVKPFAFPELFARCQSLARRGK 120

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQS  ++  +LS++L   T++  G  +HL  +E+ +I+L+     + +TK   L  +
Sbjct: 121 QNQAQSHTLSYSELSLDLFKHTLQRAGKTLHLNQREFMLIKLMMEHPESVITKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+ +       I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRGKV-DKGFDTPLIHTLRGVGYVLK 223


>gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976]
 gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G +     ++DA++LDL L  + G 
Sbjct: 1   MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFDALFSTQYDAVVLDLSLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++D++ G  SGADDY+ KPF   E+V R++A+VRR  
Sbjct: 61  DILKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S IV G L ++ +  +  +  + I LT KE+Q+++L    K+  LT+      LY 
Sbjct: 121 QQSSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     ++V+I  LRKKL     GK++I+TV G GY L
Sbjct: 181 WDNDVGSNTLEVYIHNLRKKL-----GKSWIKTVHGVGYRL 216


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V+I  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYIHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|322392158|ref|ZP_08065620.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145058|gb|EFX40457.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 134/222 (60%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   SI+DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGVSTPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL+VNL    V V G  + L GKE++++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDLTVNLSTNEVRVDGTVVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL  +   +N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSDFAEN-LQTLRSVGYILK 221


>gi|149201723|ref|ZP_01878697.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149144771|gb|EDM32800.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA S+  +L+ E F V      E   E  K   FD ++LD  L D  G 
Sbjct: 1   MRILLVEDEPRLAESLRKVLERERFIVDHASGVESAREASKLGTFDLVLLDRSLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR       V +LS  + + D+V GL  GADDY++KPF+ +E++ARIRA+ RR  
Sbjct: 61  SLLPSLRADNPGIHVIVLSARNGVNDRVAGLDGGADDYLTKPFSIDEMLARIRAVFRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I  G L  +L  + VEV G RI L  +E +++  L  R+  T+ +E   N ++ 
Sbjct: 121 KLAHATIRAGSLVFDLAYEEVEVDGARIDLPRRELRVLAALIKRRGRTVQREALENAVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +   +D  I +LR++L+  AG +  I  + G GY+LRE
Sbjct: 181 FDDEIQSNTLDSHISRLRRRLTT-AGARIEIHAIRGVGYLLRE 222


>gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
 gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
          Length = 221

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++ELL L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175
           GHA          DL ++   +TV      I LT +EY +  LL+L +N    +T+E  +
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130]
          Length = 216

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   L+  ++ V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    S PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLEKWRRGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + I  G + ++     V + G  + LT  E++++  L   K   +++   + HLYD
Sbjct: 121 GHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LRKKL +     + IETV G GY
Sbjct: 181 QDFDKDSNTIEVFVGRLRKKLHS-----DVIETVRGLGY 214


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L  E ++V     G +G+++    + D ++LD+ +  + GFE
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR    + PV +L+    +E++V+GL +GADDY+ KPF  EEL+AR+RA++RR  G
Sbjct: 64  ALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              S   +   DL ++ DA+ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 124 DDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K +   GGK  I+T+ G GY+LR
Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEEHGGKRLIQTIRGAGYILR 225


>gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   LTK      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G +G+ L     +D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R  K  TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GILAAVRANK-DTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++    DL ++L  + V   G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 SQEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV + +LR KL +    K  + TV G GYVL
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPFEAK-LLHTVRGMGYVL 219


>gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/224 (38%), Positives = 124/224 (55%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRI+LIEDD  L  ++   + +E   V +V+  D   D +E   +   D ++LDL L D 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESASY---DLVLLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ R
Sbjct: 58  QGLSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   LI  G L ++L  K+V   G  + LT +E+ ++E        TL+K     H
Sbjct: 118 RYSGNPNPLIEIGGLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 178 LYSFDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L H+++  L  + + V     G+  +       +D ++LDL L  + G 
Sbjct: 1   MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDRVLGALAGQPYDLMLLDLNLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+    IED+V GL +GADDY++KPF   EL AR+RA  RR  
Sbjct: 61  DVLRQLRQDGNQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ LI  G L  +   + V   G R+ L+ +E  ++E+L  R    +TK   +N L  
Sbjct: 121 GQAQPLIEVGPLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSLSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V++ +LRK+L    G    I+TV G GY+L
Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L   IE  L+ E   V  T  G + ++  K + +DA++LD+ + ++ G 
Sbjct: 1   MKVLVVEDESKLTSLIEKGLRCEGIEVESTSSGLEALDQVKRFSYDAVVLDIMIHELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A I TPV I++      +K+ GL +GADDY+ KPF  +ELVAR+ A+ RRS 
Sbjct: 61  SVLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++   DL+VNL  + V   G +I +  KE+ ++  L         +     ++++
Sbjct: 121 GQGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +PE  ++DV+I +LR+K+ +    K  +ETV G GY +R +
Sbjct: 181 FDFDPETNLVDVYIGRLRRKI-DQGDSKKLLETVRGVGYRIRRS 223


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   +K   F+V V   G +G+ L    EFD  +LD+ L D+ GF 
Sbjct: 7   RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+  L+   S++D V+GL  G DDYI+KPF+ EE+VARIRA++RR++ 
Sbjct: 67  VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKA 126

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GDL ++ D+  V   G  I ++  E++++  L L     ++K   L+H++
Sbjct: 127 DDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D     E  I++ +I  LR+K+ +  G +  I T  G GYVLRE
Sbjct: 187 DYDFRGEAGIVESYISYLRRKI-DVDGLEPLIHTKRGVGYVLRE 229


>gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
 gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MR+LL+EDD+ + + I   L      V   + G+ G+ L    +FD IILD  L   + G
Sbjct: 1   MRVLLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPGGVEG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ LR     TPV +LS ++ +++KV GL++G DDY++KPF+  EL AR+ A+VRR+
Sbjct: 61  LHILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  A  Q+ +  GDL ++L ++ V   G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +P+  +IDV I +LR+K+         + T+   GY+L+E
Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKIDRPF-HHPLVHTIRNAGYMLQE 225


>gi|260431422|ref|ZP_05785393.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415250|gb|EEX08509.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 225

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED++ LA +    L+  +F V V   GED ++  + +++DAIILDLGL D+ GF
Sbjct: 1   MRLLLIEDNEKLALNTSASLRENSFAVDVVHTGEDALDAIRNFDYDAIILDLGLPDVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+  +  TP+ I +   ++++++RGL SG+DDY+ KPF   EL+ARIRA++RR  
Sbjct: 61  DLLHQLKQIRNETPIIICTARDALDERLRGLNSGSDDYVVKPFAFAELLARIRAVLRRP- 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G+A  +++ +G++  +   ++V + G     + +E  ++EL   R     +K    N LY
Sbjct: 120 GNALGMVLGSGNVRFDTVDRSVTIGGRPARFSARELALLELFLTRAGRVQSKAAIENALY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P    I+V   +LRKKL+        I  + G GY+L
Sbjct: 180 GFDAPPTPNAIEVLTHRLRKKLTEYEADVT-IHNLRGVGYLL 220


>gi|238755145|ref|ZP_04616491.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
 gi|238706592|gb|EEP98963.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
          Length = 220

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L  E +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDDLLQKGVALALTREGYACDCAGTAAEANSLIITSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   IS PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + +   DLS+NL  + V ++   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNFLQQDDLSLNLSTQQVYLRQQPLEITPKEFAILSRLIMRAGHTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D+     ++V +  LR+KL     GK  I TV G GY L
Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKERIRTVRGIGYRL 216


>gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15]
          Length = 226

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   LK  +F V     G++G+ +    ++D +I+D  L  + G 
Sbjct: 1   MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      PV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI ++VRR+R
Sbjct: 61  SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++  V    DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+ +       ++T+ G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTIRGAGYMLRETA 226


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  +E+ LK E +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ I++   S+ D+V G   GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-NTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/228 (39%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 121 GHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEMFL 175
           GHA          DL ++   +TV      I LT +EY +  LL+L +N    +T+E  +
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDL--LLTLMQNVGDVVTREHLV 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 SQVWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 133/228 (58%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  L  ++  V     GE+ +E+ K  E+D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 64  VCQRIREFS-NMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A     + +     L ++ D++ V V+   + LT KEY ++ELLS   N   ++E  LN
Sbjct: 123 RATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P +V+ +DV I +LR+K+    G   YI T WG GY  ++
Sbjct: 183 IVW-GYDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYFQD 229


>gi|190576178|ref|YP_001974023.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014100|emb|CAQ47739.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 219

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD ALA  +  +L+   + V+V   G    E+ +  +  A I+DLGL  + G 
Sbjct: 1   MRILLAEDDAALAQRLVPLLEQAGYVVHVVADGRQAEEIGQIEDLQAAIVDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DK+ G  +GADDY++KPF  +ELV R+RA++RRS 
Sbjct: 61  SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++++A   E+ G  + L+ +E++++          + ++     ++D
Sbjct: 121 GHASPRLHCGPLQLDVNAGRFELDGQALSLSPQEFRLLSYFIHHSGQVIGRDRLGEQVFD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +P+   +DV + ++R+KL     G + I+TV G+G+ L
Sbjct: 181 GGHDPDSNALDVLLGRVRRKL-----GIDLIQTVRGQGWRL 216


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+A+   +   L  E F V   + GE+ ++ C    FD +ILD+ +  + G EV
Sbjct: 5   ILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ +R  + + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+   
Sbjct: 65  LKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H Q ++V GDL +++   ++   G  + LT KE+ +++L    +N   TKE    
Sbjct: 124 AGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIYQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +  II+V I +LR+K+ +      YI+T+WG GY
Sbjct: 184 LIWKDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGY 226


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA+ +   L+ E F V     GEDG+       FDAI+L++ L  + G+
Sbjct: 1   MRVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +I TP+ +L+      D+      GADDY+ KPF+   LVAR+RA+VRR+ 
Sbjct: 61  EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDLS++   + V      + LT +E+ ++E L    +T LTK   L +++D
Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
              + +  I++V++  LR+K+ +A  G + I+TV G GY  R   + ET E  E+ 
Sbjct: 181 AHYDGDENIVEVYVGYLRRKI-DAPFGAHTIDTVRGVGY--RLTTRPETPESPESP 233


>gi|170017835|ref|YP_001728754.1| response regulator [Leuconostoc citreum KM20]
 gi|169804692|gb|ACA83310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 137/222 (61%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA +I   L+ +  +V V   G DG    +   +D II DL L    G 
Sbjct: 5   IKILLIEDDANLADNIVGFLQ-DFADVNVVTNGLDGEYEGQESPYDLIICDLMLPGENGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   I TPV IL+  SS++DK+ G   GADDY++KPF +EEL+ R++A++RR+ 
Sbjct: 64  EVIKHLRDNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRAG 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +++ ++I  GD+ +NL+ + V+V G  + L GKE+ ++  L+  KN  +T++   + ++
Sbjct: 124 VYSEDNMITVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + ++++++  LR+KL  A G  + I+T+   G++L
Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNDLIKTLRNIGFIL 224


>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 224

 Score =  140 bits (354), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K  A  I   L++E+F V V+  G + + L     FDAI+LD+ L    G 
Sbjct: 1   MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K  TPV +LS    + ++V GL +GADDY+ KPF   EL+AR+R+I RRS 
Sbjct: 61  SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL+++   +  +  G    LT +EY+++E L         +   L  ++D
Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   ++DV+I +LR+K+      K  + TV   GYV++E +
Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPK-LLHTVRNVGYVMKEQS 224


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/225 (40%), Positives = 132/225 (58%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  +LK  N+ V     GE G++      +D IILD+ L  + G 
Sbjct: 1   MRILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  +I+TPV +L+    I DKV GL SGADDY+ KPF  EEL+ARIRA+ RR +
Sbjct: 61  SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G     S +  GD  + LDA  +++      + LT KE +++E L LRKN   +KE+ + 
Sbjct: 120 GDILPDSSLKYGD--IELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+    E E   ++V+I  LRKKLS     K  I TV G GY+L
Sbjct: 178 KLWGFDSEVEPNNVEVYISFLRKKLS-FLNSKVSIVTVRGVGYIL 221


>gi|49081818|gb|AAT50309.1| PA2809 [synthetic construct]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +    +    TV G GYVL E 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDY-PQRLTHTVRGMGYVLEER 224


>gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL EDD  L   +   L+   F V   D   DG+      +  ++ A +LDLGL   
Sbjct: 1   MRILLAEDDSMLGDGLRAGLRQMGFQV---DWVRDGVAAERELRAVDYVAAVLDLGLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ALR A+ +TPV +L+   ++ D++RGL +GADDY+ KP +  EL AR+R++VR
Sbjct: 58  DGMEVLQALRAARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G AQ ++  G LS++  A+ V      + L+ +E+ ++  L       L++E     
Sbjct: 118 RSHGVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y    E E   I+V I  LR+KL       + I+TV G GY+L   A
Sbjct: 178 MYSWGLEVESNTIEVHIHHLRRKLQ-----ADVIQTVRGVGYMLNPKA 220


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   I   LK E+++V     GE+ ++      +DA+ILD+ +  + G 
Sbjct: 1   MRILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R    +TPV +L+   S+ED+V+GL +GA+DY+ KPF  EEL+AR+R +VR++ 
Sbjct: 61  SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++    G L V++D   V   G  I L+ KE+ ++  +   +   L++E    HL++
Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   ++DV+I  LRKK+      K  I TV G GYVLR N 
Sbjct: 181 YDYMGSSNVVDVYIRYLRKKIDEGFEPK-LIHTVRGAGYVLRVNG 224


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  L+ ++++V     GE+ + L    +FD I+LDL L  I G +
Sbjct: 4   RILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR  R +    PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR+  
Sbjct: 64  LLRHFRESS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +A++        +I   DL ++L + +V+V+GH + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++        +I+V I +LR+K+        YI T+WG GY
Sbjct: 183 IYQFIWEDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGY 228


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +   K  E+D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    + PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 64  VCQQIREFS-NMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   A   IV GDL ++ +++ V +    I+LT KE+ ++ELL L  N   ++E  LN
Sbjct: 123 KASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G D P +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVW-GYDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFK 228


>gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 133/221 (60%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  I G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR AK +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVVKTLR-AKRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDDFPVK-LIHTVRGVGYVL 219


>gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           NEM316]
 gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L  E ++V V   G +G++     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R L+  K +T + +++   S+ D V GL  GADDYI KPF  EEL+AR+RAI RR   
Sbjct: 64  ITRRLQAEK-TTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +G + S     DLS+N   ++       I LT +E+ ++ +L    N  +T+E 
Sbjct: 123 ETKTKEKGDSGSF---RDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L H++      E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 180 LLEHVWKYDVAAETNVVDVYIRYLRGKI-DIPGRESYIQTVRGMGYVIRE 228


>gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+ ++ + I+  L  EN+ V V   G  G+++     FD IILD+ L D  G E
Sbjct: 3   KILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDKNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R   I TP+  L+ + + E+   GL  GADDY+ KPF   EL ARI+A++RR + 
Sbjct: 63  VCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGKS 122

Query: 121 --GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              H Q  ++    DL V+ DAKTVE     I LT  EY+++ +L   K   L++   L 
Sbjct: 123 NDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +D     E  ++DV+I  LRKK+   A  K  I TV G GYVL+E
Sbjct: 183 SAWDINFNMETNVVDVYINYLRKKMDTDANNK-LIHTVVGMGYVLKE 228


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   +   + ++ DA++LD+ L D+ GF
Sbjct: 26  VRVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGF 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VLR LR    + PV  L+   ++ED+V GL  G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 86  AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 145

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++++  GDLS++ D+  V   G  I+LT  E++++  L       L+K   L+
Sbjct: 146 FAVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILD 205

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +++++I  LRKK+    G    I T+ G GYVL+
Sbjct: 206 RVWNYDFGGQANVVELYISYLRKKID--VGRAPMIHTLRGAGYVLK 249


>gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
          Length = 219

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  QVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  IEL LK E +N+ V + G  G+   +    D I+LD  L  I G E
Sbjct: 5   RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ 
Sbjct: 65  ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNKE 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               L+   DLS+N + + V  +G+R I LT KE+ ++E L       L+++  L  ++ 
Sbjct: 125 ENPDLLQFLDLSLNRNTREV-FRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 184 YDFMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V V   G D +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A   +PV +LS   ++ D+VRGL  GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRG- 119

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + +++  D L ++   +TV   G  + L+ KE+ ++E L       L +   L H++
Sbjct: 120 AHERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +    ++D ++  LR+K+     G + +ETV G GY LR +A+
Sbjct: 180 DFAYDGTSNVVDQYVAYLRRKIDKPF-GTSQLETVRGAGYRLRTSAR 225


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I   ++ +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223


>gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
 gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
          Length = 219

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   ++S     +V +L +DGI+        E+DAI+LDLGL  +
Sbjct: 1   MKILVVEDEPRLGEQI---VESLEQTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  G+LS++     V  QG  I LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 127/228 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+  A ++   L S+N+ V     G++G EL + + +D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+  ++  DK  GL +GADDY+ KPF  EEL ARIRA++RR++
Sbjct: 61  TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +QS++  GDL  +  +  V  +   + LT KEY ++EL         +    L +L+ 
Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + P  + +   I  LR+KL  A    + IETV+G GY L+   + E
Sbjct: 181 FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRLKPKERRE 228



 Score = 48.5 bits (114), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +   +  +L+     +          EL +    D +ILD+ +  I G E
Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTE 572

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA-------RI 112
           + + +R   +  S P+  L+  S  E   +    GADD++SKP    ELV        RI
Sbjct: 573 LCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERI 632

Query: 113 RAIVRR--SRGHAQSLIVTGDLSVNL 136
           RA+ R    R  A++ +   +L + L
Sbjct: 633 RAVKREMGDRQQAKAGLTRSELRLQL 658


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ E   V     GE+ +E  K  E+D I+LD+ L  + G E
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR R 
Sbjct: 64  VCQQIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V+GDL ++ + + V + G  I+LT KE+ ++ELL+   N   ++E  LN
Sbjct: 123 EEAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LVWGYEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYFQ 228


>gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp.
           AO22]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR A    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +IDV I +LR K+ +A   K  I TV G GY L     D T
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTLDAPDDDLT 229


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ L ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|254253753|ref|ZP_04947070.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898398|gb|EAY70241.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 224

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ++  S+   L    + V     G  G      +E+ A++LDLGL  + G 
Sbjct: 1   MRLLLVEDDLSIGQSLLRALSDAGYGVEWVRDGAAGHASIDAFEYTAVLLDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R +    P+ IL+    ++ +V+GL  GADDYI+KPF   EL+AR+RA++RR  
Sbjct: 61  DVLRAVRASHKEVPILILTARDDVDTRVQGLDLGADDYIAKPFQVRELLARVRAVMRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +    L ++LD +T+  +G  + LT +E+ ++     R  T L++E     LY 
Sbjct: 121 GYAASRLGDDSLCLDLDKRTLNCRGVELPLTSREFALMLAFLERPGTILSREQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   IDV I  +RKK      G++ I  V G G+ +
Sbjct: 181 WGREIESNAIDVLIYSIRKKF-----GQSVIRNVRGIGWTV 216


>gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  + G 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRAVIETRRGQGYL 216


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K +A  ++L L+ E +       G DG+E  + + +D ++LD+ L ++ G E
Sbjct: 3   RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VLR +R+    TP+ +L+  +SI DKV GL  GA+DYI+KPF  EEL+AR+RA +R  ++
Sbjct: 63  VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQT 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  ++  +L++N   + V+     I LT KE++++      K   L++E  L +++
Sbjct: 123 RERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +IDV++  LRKKLS        ++TV G GY L+E
Sbjct: 183 GFDYYGDTNVIDVYVRYLRKKLSLTEA----LQTVRGVGYRLKE 222


>gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2]
 gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  + G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALR-ERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + S +   DLS++L ++ V     R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +++V I +LR KL      K  + T+ G GYVL   A  E+
Sbjct: 180 DINFDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAES 228


>gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
 gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
          Length = 236

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ L  S+   L+ + + V     GE+  E+     +D IILDL L  + G 
Sbjct: 13  MRILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDGM 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R     T V ILS    ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 73  EVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRV 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+LS++  A+TV  +G  + LT KE  ++E L L +   +++E  ++H++D
Sbjct: 133 VQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVWD 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +     I V I  LRKKL  A G       V G+GY++
Sbjct: 193 GSVDSFSNSIRVHISALRKKLRTALGYDPITNRV-GQGYMI 232


>gi|167760385|ref|ZP_02432512.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
 gi|167662058|gb|EDS06188.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 132/227 (58%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+I+D+ A+  ++  +LK E   V     G+  +++ K   FD I+LD+ + +  GF
Sbjct: 4   ISVLIIDDETAVQKAVSAVLKREQMEVSCAGSGQFALDILKENTFDIILLDVIMPEQDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  +I TPV +LSG +    +V GL  GADDYI+KPF+K  LV++I+AIVRR+R
Sbjct: 64  DLLSELRRRRIYTPVILLSGKTEDAAQVEGLGLGADDYITKPFSKTVLVSKIQAIVRRTR 123

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +A      QS I+ G  +++++++T+   G  I LT KE+ ++ L       T +K+  
Sbjct: 124 QYATTAESIQSPILKGPFTLHMNSQTIFKNGKEIALTSKEFALLCLFMDHPGHTFSKQEL 183

Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  DG D      I V+I KLR K+ +      +I TVWG+GY
Sbjct: 184 FQEVWKNDGSDN---NTILVYIKKLRSKIEDDPSQPFHIRTVWGKGY 227


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  IEL L+ EN++V +   G+ G+E      +D I+LDL L +I G E
Sbjct: 3   KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR   
Sbjct: 63  ICRQIRQNQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQ-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI    + ++ DA  V V G  + LT  EY ++ LL   +N  L +E  +  ++  
Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E E  ++DV+I  LR KL    G    IETV G GYV+R+
Sbjct: 180 DTEVETNVVDVYIRYLRNKLK-PFGKDKCIETVRGVGYVVRQ 220


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 132/228 (57%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59
           +L+IED+K +A  IEL L +E    Y T++  DG+  L KF E   D +ILDL L  + G
Sbjct: 7   VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ IL+   +I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 64  LEVARRIRKTS-NTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRV 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++
Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                PE      ++DV+I  LR+KL    G +  I TV G GYVLRE
Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224


>gi|27382389|ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355560|dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +   L +  + V +   G + +      ++  I +D  L DI G  
Sbjct: 7   RILVVEDDPETAGQLVEELTTSGYEVDLAATGREALSHGAARDYAVITIDRMLPDIDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR   I+ P  I+S +  ++D+VRGL++G DDY+ KPF+  EL+AR+ A+ RRS  
Sbjct: 67  VMRQLRDDGIAAPFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A ++L+  GDL+++L A+    +G +I L  +E+Q++E L   +   +++ M L H++D
Sbjct: 127 IAKETLLRVGDLAIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAMLLQHVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   IIDV++ ++R+K+ +A      I T+ G GY LR
Sbjct: 187 LHFDPSTNIIDVYVGRVRRKVDDAQ-AYPLIHTIRGIGYCLR 227


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  F   + + G+D +E    + FD +ILDLGL D  GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ LR    + P+ IL+    + DKV GL++GADDY++KPF   EL+AR+RA +R    
Sbjct: 63  ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQPS 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   + T ++ +NL  + V+V    + L+ KE+ ++E         L++E  L+ +
Sbjct: 123 KNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL     G + IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GSDRIETVRGMGYRL 220


>gi|148256853|ref|YP_001241438.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409026|gb|ABQ37532.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 221

 Score =  140 bits (353), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  +   L++  + V  +D GE    L    ++ A++LDLGL  + G 
Sbjct: 1   MRVLLVEDDPRLSSDLSRTLQAAGYLVETSDNGEQAWFLGDTEDYGAVVLDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+  +S  ++V G+ +GADDY+ KPF  EEL+AR+RAIVRRS 
Sbjct: 61  SVLKRWRTAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++ +GDL ++     V + G  + L+  EY++I  L  +    + +     ++Y 
Sbjct: 121 GHAAPVLSSGDLMLDERQMKVSLAGVPVPLSQLEYRLIAYLLRQSGRVVPQHELEENVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   ++V I ++RKKL     G   IET  G GY++ E A+
Sbjct: 181 LGHDHDSNALEVLIRRVRKKL-----GAEIIETRRGFGYMIPETAE 221


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ + +G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRSGEKSYIQTVRGTGYVIR 227


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|27367654|ref|NP_763181.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
 gi|27359226|gb|AAO08171.1| DNA-binding response regulator [Vibrio vulnificus CMCP6]
          Length = 218

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L  S+   L    + V   + G       K  +F A+ILDL L DI G 
Sbjct: 1   MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R A  S PV IL+    I+D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  DVLRNIRSAGFSLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G+LS++L  +++  Q   + LT  E++++  L       ++K+     L+ 
Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEVVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D      I+V I  LRKK  N       I+ + G GY++
Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/222 (40%), Positives = 132/222 (59%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+K LA  IEL LK E++ V V   G  G+E     E+D I+LDL L  I G E
Sbjct: 3   KILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLMLPGINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +L+    + DKV GL SGADDYI KPF  EEL+AR+R+++RRS  
Sbjct: 63  VCRRIRKTK-QTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121

Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S  +T + L ++ +A+ +      I LT +E+ ++ +L       +T+E  L  ++ 
Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV+I  LR K+ +  G  ++I+T+ G GYV+R
Sbjct: 182 YDSEVETNVVDVYIRYLRSKI-DEPGEASFIQTLRGLGYVIR 222


>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
 gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
          Length = 230

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD + A  +   L    + V     G DG+ L     FD II D  L  + G  
Sbjct: 4   KILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ A+R A ISTPV ILS +++++D+V GL++GADDY+ KPF+  EL ARI A+VRRS  
Sbjct: 64  MVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSDR 123

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A    ++ +  GDL ++L A+TV   G  I +  +E+ ++E L+      +T+ M L  
Sbjct: 124 AASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +P   ++DV I +LR+KL     G   + TV G GY L
Sbjct: 184 IWNYHFDPGSNVVDVHIGRLRRKLEEGF-GTPILHTVRGAGYRL 226


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01]
 gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01]
          Length = 217

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 138/223 (61%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +   ++  L+++ + V      E+ + L + + +D ++LD+ L  + GF
Sbjct: 1   MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L ALR  +   PV +L+   + EDKVRGL+ GADDY++KPF+  EL AR+RA++RR+ 
Sbjct: 61  TFLEALR-RQHKLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G L+++L+ K V  +G  + L+G+EY ++E L+L       +E+ L  ++ 
Sbjct: 120 GEAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVWA 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +  + K++DV+I +LR+KL     G+  IET  G GY  RE
Sbjct: 180 GEEGVDPKVVDVYIYRLRQKL-----GQGAIETERGLGYSFRE 217


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 228

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 140/227 (61%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK ++ SI+  LK + +++     GE+G+ + +   +D IILD+ L  + G 
Sbjct: 1   MKILVVEDDKLISQSIKNSLK-DYYSIDTALDGEEGLYMAEQNIYDLIILDIMLPSLNGD 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L++LR   +STP+ +L+   S+EDK+ G + GADDYISKPF+ EEL  RI A++RRS 
Sbjct: 60  EILKSLRKNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALLRRSG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G+L +++  + + +   +++L  K + ++E L   K T LTKE   + ++
Sbjct: 120 ALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +  + I++V++ KLRK L    G    I+TV G GY+ + + K
Sbjct: 180 GFESDTAINIVEVYMHKLRKTLV-EHGCDGEIKTVRGIGYMFKSSDK 225


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219


>gi|330897339|gb|EGH28758.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 220

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+A+   I + L +E + +     G   +   +   FD ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEGYTLDWLGDGLSALHALRSEPFDLLLLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   ++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    +S++  ++ V  +G  + +T  EYQ++  L +R    +T+E   N LY 
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +D+ E   ++V I  LRKKLS        I TV G GY+L   A
Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220


>gi|317402633|gb|EFV83192.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRILL+ED+  L  ++E  L+S   +V       DG+   ++     +DA++LD+ L   
Sbjct: 1   MRILLVEDNLDLGDAVESKLRSAGHSVQWV---RDGVAALRWGLDETWDALVLDINLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF V+R LR A +  PV +++  S IEDK+  L  GADDY+ KPF+  EL AR+RA++R
Sbjct: 58  DGFSVIRELRAAGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   S+   G+LS++L  + V + G  + L  +E++++E+L  +   T+ KE  +N 
Sbjct: 118 RPAGQTSSVTAYGNLSLDLANRHVTLAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+D  D+  +  +++ I +LRKKL   AG    I TV G GY  R +
Sbjct: 178 LFD-LDDGSLNALELLISRLRKKL---AGASIDIVTVRGVGYQARSH 220


>gi|300024305|ref|YP_003756916.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526126|gb|ADJ24595.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 221

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +AHSI   L + +F V     GE          +D I+LDLGL  I G 
Sbjct: 1   MRILVVEDEPKIAHSIVTALSAAHFQVDAARDGETAWFRGDTENYDLIVLDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   +  ++V G+ +GADDY++KPF  EEL+AR+R+++RRS 
Sbjct: 61  SVLKKWRATGRMMPVLILTARGAWPERVEGIDAGADDYLAKPFQLEELMARVRSLIRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  +++  G L+++     V + G  + ++  EY++I  L   K   +     + HLY 
Sbjct: 121 GHGSAILTAGPLALDTRQMRVVLDGAPVPVSPLEYRLIGYLMHHKGRVVPPTELIEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D  +   ++  + +LR+KL     G+  IET  G GY++ E +
Sbjct: 181 DDDARDANALEAVVTRLRRKL-----GQETIETRRGFGYMVSEPS 220


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   +   + ++ DA++LD+ L D+ GF
Sbjct: 22  VRVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGF 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV  L+   ++ED+V GL  G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 82  AVLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRS- 140

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A     ++++  GDLS++ D+  V   G  I+LT  E++++  L       L+K   L
Sbjct: 141 GFAIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQIL 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++     +  +++++I  LRKK+   AG    I T+ G GYVL+
Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRAPMIHTLRGAGYVLK 245


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 226

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD  +A  +   L+  +F V   D G+ G+ +    E+D +I+D  L  + G 
Sbjct: 1   MKALVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      P+ ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI +++RR+R
Sbjct: 61  AIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++  V    DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QAAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+ +       ++TV G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKI-DKEFDTPLLQTVRGAGYMLRETA 226


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 10  MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 232


>gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 230

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 131/229 (57%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR A    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +A   K  I TV G GY L  +A D+
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDD 226


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|170690127|ref|ZP_02881294.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170144562|gb|EDT12723.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 223

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH    +L+  NF V     GE    +     +D ++LDL L  + G 
Sbjct: 1   MKLLLVEDNSELAHWTVNLLRLANFAVDCVPNGECADTMLTTQHYDVVVLDLRLPRMDGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR      PV +L+   S +DKV    +GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  EVLARLRRRGDMVPVIMLTAHGSTDDKVDCFNAGADDYVVKPFDVRELVARIKALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  GDL    D +       R+ L  +E+ ++E L LR+  T++K + +  ++ 
Sbjct: 121 GGMSSCLTCGDLQYISDTREFFHNDERLALRRREHTVLETLMLRQGKTVSKSVLMESVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L+ ++     I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHLARSSA---QIMTLRGLGYILR 219


>gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227]
 gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC
           796-83]
 gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           3594-74]
          Length = 222

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVANEEN 222


>gi|227431176|ref|ZP_03913231.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353071|gb|EEJ43242.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 136/222 (61%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA ++   L+       VTD G DG    +   +D II DL L    G 
Sbjct: 7   IKILLIEDDVNLADNVVGFLQDFADINAVTD-GLDGEFEAQEAPYDLIISDLMLPGETGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR   + TPV IL+  +S++DK+ G   GADDY++KPF++EEL+ R++A++RRS 
Sbjct: 66  ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 125

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +++ + +  GD+ +NL+ + V+V G  + L GKE+ ++  L+  KN  +T++   + ++
Sbjct: 126 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + ++++++  LR+KL  A G  N I+T+   G++L
Sbjct: 186 GIDSDTTINVVNIYLNNLRRKLE-AVGQNNLIKTLRNIGFIL 226


>gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ L   +   L+   + V     GE+G  L     +DA+ILDLGL  + G  V
Sbjct: 1   MLIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLSV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    S PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ G 
Sbjct: 61  LERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGL 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A + I  GD+ ++  A  V   G  + LT  E++++  L   K   +++   + HLYD  
Sbjct: 121 ASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +   I+VF+ +LRKK      G + IETV G GY L+E
Sbjct: 181 FDRDSNTIEVFVGRLRKKF-----GSSLIETVRGLGYRLQE 216


>gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
 gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 137/232 (59%), Gaps = 6/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  I+  L    F V ++  G +G+ L   +++DAIILD+ L    G+
Sbjct: 1   MRLLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVMLPGQDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR A+  TPV +LS   S++++V+GL+ GADDY+ KPF+  EL ARI+A++RR  
Sbjct: 61  ALLRQLR-ARKPTPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRRV 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     + +  GDL V+L A+     G R++LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 GTGGDSTWLQVGDLQVDLLARRATRAGQRLNLTAKEFALLSLLARHQGEILSKMMISEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +D   + +  +++V + +LR K+ +A      + TV G GY+L   A  E C
Sbjct: 180 WDMNFDSDANVVEVAMRRLRLKV-DAPYDTKLLHTVRGMGYLLESRA--EAC 228


>gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   K + +D I+LD GL +  G 
Sbjct: 1   MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVKQHHYDCILLDRGLPNASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R   +  PV  ++    I D+V GL  GA+DY+ KPFN EEL ARIRA +R+ +
Sbjct: 61  DILKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ +AKTV   G  ++LT KE+Q++  L    N  +T+E     LY 
Sbjct: 121 KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   I+VFI ++RKK+     G   I+T+ G GY
Sbjct: 181 WGEEIESNAIEVFIYQIRKKI-----GSQLIKTIRGLGY 214


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59
           RIL+ ED+  +   + + LK   ++V   + GED ++    +   FD ++LD+ +  I G
Sbjct: 3   RILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V + +R    +  + +L+  +   DKV GL  GADDYI+KPF+  EL AR+ AI RR 
Sbjct: 63  FTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRRV 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   QS+I +G  ++NL ++TV   G  I LT  EYQ++E     KNT L +   
Sbjct: 123 CMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRASI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LNH++      + KI+DV I ++R K+        YI T+WG GY
Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGY 227


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  LK ++++V     GE+ + L +  +FD I+LDL L  + G E
Sbjct: 4   RILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR+  
Sbjct: 64  LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +A++        +I   DL ++L + +V+V+G  + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++        +I+V I +LR+K+     G  YI T+WG GY
Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGY 228


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|218516896|ref|ZP_03513736.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli 8C-3]
          Length = 629

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 126/220 (57%), Gaps = 13/220 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   + K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  GDL  +   +   V G  + LT +EY ++E L ++  TT++K         
Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTAL------ 174

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               P+   ++++I +LRKKL N++     I T+ G GY+
Sbjct: 175 ----PKASSVEIYIHRLRKKLENSS---VQIATLRGLGYL 207


>gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   I   L+      +V +L +DGI+        E+D I+LDLGL  +
Sbjct: 1   MKILVVEDDPRLGEQIVETLEKTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL ARIRA +R
Sbjct: 58  DGLTVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G+A  ++  G+LS++     V  QG  I LT  EY+++          +++   + H
Sbjct: 118 RASGNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 9/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+     L L+ E F V     GE  +E       D +ILD+ L    G+ V
Sbjct: 6   ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  + + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR++A++RRS   
Sbjct: 66  CREIR-RQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSNAP 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G   +L   G L+++ +A+ VEV+G  I LT KE++++  L+ R     ++E  L  
Sbjct: 125 AGTGAGPALRYPG-LTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLAG 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D     + + +D  I +LR+KL     G+NY++TVWG GY
Sbjct: 184 VWDYEYPGDTRTVDTHIKRLREKLRGT--GRNYLKTVWGLGY 223


>gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 138/225 (61%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+K L+ SI+++L+   + V     GE+ +E  K   +D +ILD+ +  + G+
Sbjct: 1   MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR  K   P+ +L+  S +ED++ GL+ GAD Y++KPF+K EL+A I A++RR +
Sbjct: 61  QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR-Q 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDLS++LD+K +    H + L+ KE++++ +L   KN  L+KE  L  ++ 
Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVW- 178

Query: 181 GRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G D   V+  ++V++  LRKKL      +  I++  G GY L E 
Sbjct: 179 GYDSDAVENHVEVYVGFLRKKL-RLLESRVSIQSRRGLGYFLAEQ 222


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 133/228 (58%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     GE+ +E  K  ++D I+LD+ L  + GFE
Sbjct: 3   KVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAH 121

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H      +  ++    L ++ +++ V + G  ++LT KE+ ++ELL    N   ++E  L
Sbjct: 122 HDVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 181

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++ G D P + + +DV I +LR+K+    G  +Y+ T WG GY  +
Sbjct: 182 NTVW-GYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 228


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/230 (37%), Positives = 132/230 (57%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           I++IEDD  +A SI   L+ E +F+V +T  GE G+     +  + I+LD+ L  + GFE
Sbjct: 5   IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGFE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR   A    P+ +L+  +   DK+ GL  GADDYI+KPF+  EL+ARI A++RR+
Sbjct: 65  ICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRRT 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S+   G L ++ +   V  QG  I+LT KE+ +++LL+  K   LT+E  L+ ++
Sbjct: 125 EGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
               + E + +DV I ++R+KL    G   YIET  G GY   E  K  T
Sbjct: 185 GIDYDGETRTLDVHIRRVRQKL----GIDGYIETAVGIGYRFVEAGKQAT 230


>gi|116618899|ref|YP_819270.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097746|gb|ABJ62897.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 233

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 136/222 (61%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA ++   L+       VTD G DG    +   +D II DL L    G 
Sbjct: 5   IKILLIEDDVNLADNVVGFLQDFADINAVTD-GLDGEFEAQEAPYDLIISDLMLPGETGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR   + TPV IL+  +S++DK+ G   GADDY++KPF++EEL+ R++A++RRS 
Sbjct: 64  ELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLRRSG 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +++ + +  GD+ +NL+ + V+V G  + L GKE+ ++  L+  KN  +T++   + ++
Sbjct: 124 VYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + ++++++  LR+KL  A G  N I+T+   G++L
Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQNNLIKTLRNIGFIL 224


>gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 227

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED++ +A  I   L++++FNV     G  G +       D IILD+ L    G 
Sbjct: 1   MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR+LR   + TP+ +L+  + + D+V+GL  GADDY++KPF  EEL ARI+A++RR  
Sbjct: 61  DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G L ++   +++  QG  + LT +E+ ++E L    N  LT+   L H++ 
Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSN-AAGGK--NYIETVWGRGYVL 221
              +P   ++DV I ++R K+++    GK    IE++ G GY L
Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224


>gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I + L    FN+ + TD G  G +      +DA+ILDL L  I G
Sbjct: 1   MRILLIEDDKIIGDGINVGLTKLGFNLDWFTD-GVIGRQALTSAPYDAVILDLSLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R A    PV IL+   ++E +V GLQ+GADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LDLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +V G L  +  A++V + G  + LT +E  ++ELL   K   L + +    LY
Sbjct: 120 HGQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  DE     ++V I  LR+KL N       I TV G GY L
Sbjct: 180 NWDDEVSSNAVEVHIHHLRRKLGNGV-----IRTVHGVGYTL 216


>gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1125]
          Length = 222

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +   SI+  L+ + ++V   + G+  +   K ++++ I+LD GL    G 
Sbjct: 1   MRILLVEDDTSQGESIKTWLELDGYSVDWVERGDYAMTALKQHDYECILLDRGLPYASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR  +  TPV  L+   SI D+V GL  GA+DY+ KPF+ EEL ARIR+ +R  +
Sbjct: 61  EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++  ++ ++  AKTV+ +G    LT +E+Q++  L    N  +T+E     +Y 
Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+V+I +LRKKL     G   I T+ G GY + E
Sbjct: 181 WGDEVESNAIEVYIYQLRKKL-----GSQTIRTIRGLGYRMGE 218


>gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
 gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+       +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSAALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|255034088|ref|YP_003084709.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254946844|gb|ACT91544.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 232

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  +   I+  L +    + +   G+ G+++   ++FD IILDL +  I G 
Sbjct: 1   MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R  R A+++TP+ +L+ + + E+ V GL SGADDY++KPF   EL AR+R ++RR +
Sbjct: 61  EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     ++  GDL ++   KTV+  G  I LT  E++++E L    N  L +   L 
Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++D        ++DV+I  LRKK+      K  I TV+G GYV+R++ +D
Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIK-LIHTVFGMGYVIRQSYED 230


>gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11]
 gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9]
 gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9]
 gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli]
 gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli]
 gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli]
 gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli]
 gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11]
 gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042]
 gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9]
          Length = 222

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         I  G ++++ +       G R+ LT KE++++   + R   TL+++ 
Sbjct: 123 QPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRDA 182

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LN ++ G D P E +++D+ +  LR K+       +Y++TV G GY +
Sbjct: 183 LLNGVW-GFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQM 230


>gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDIDLVARLIPALNKAGYTVEHADNGIDGAFLGEEEAFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+ A++RR  
Sbjct: 61  SVLSHWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +L+    +S+++D +T    +G  I LT  EY+++  L    +  ++K      +Y
Sbjct: 121 GRADNLLQHAGVSLDVDKQTATNAEGEVIELTKIEYRLLHYLMANPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L++
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKD 219


>gi|120553067|ref|YP_957418.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120322916|gb|ABM17231.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ LA  +   L+   F++  T    +   L +  ++ A +LDLGL D  G 
Sbjct: 1   MRLLLVEDDRLLAEGLVRQLEKAGFSIDHTSSAREAQILGEQEDYRAAVLDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   +  PV +L+     +DKV GL++GADDY++KPF  EEL+ARI A++RRS 
Sbjct: 61  EVLKRWRSKLVECPVLVLTARGDWQDKVNGLKAGADDYLAKPFQTEELIARINALIRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S +  G   ++ + +++   +G    LTG E++++  L  R     +KE  +  LY
Sbjct: 121 GRVHSQVKAGGFELDENRQSLRTEEGAEHALTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  + P   +I+ +I +LRK + N       I T  G+GY+ 
Sbjct: 181 NLDESPSENVIEAYIRRLRKLVGNET-----ITTRRGQGYMF 217


>gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL +    +  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEQKLLHTIRGMGYVL 219


>gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
 gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 135/228 (59%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +++++LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL E+ +D
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFAPK-LIQTVRGMGYVL-EDPED 226


>gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
           Thermotoga Maritima
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED++ LA  I   LK E F V V   GE+G        FD +ILD+ L    G+
Sbjct: 3   VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L++ R + ++TPV  L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 63  EILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K        I LT KEYQ++E L   KN  +TKE    HL+ 
Sbjct: 123 ESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE    ++   I  LRKK+      K  I TV G GYV R+
Sbjct: 183 FDDEVFSDVLRSHIKNLRKKVDKGF-KKKIIHTVRGIGYVARD 224


>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+   L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL       + I+TV G GY+L   A
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLLTPPA 220


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +A  I+  L+ ++++V +   G +G++  +  E+   ILD+ +    G 
Sbjct: 1   MKILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR      PV +L+   + +D V GL++GADDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++  +  V   G+ I LT KEY ++E L    N  L++ M   H++D
Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+      K  I TV G+GY+LRE 
Sbjct: 181 YAFDSFTNIIDVYVNYLRKKVDKEYSTK-LIHTVRGQGYILREG 223


>gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct]
          Length = 230

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  + G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALR-ERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + S +   DLS++L ++ V     R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +++V I +LR KL      K  + T+ G GYVL   A  E+
Sbjct: 180 DINLDTDTNVVEVAIKRLRAKLDGPFENK-LLHTIRGMGYVLENRALAES 228


>gi|85706948|ref|ZP_01038038.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. 217]
 gi|85668559|gb|EAQ23430.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. 217]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA +I   L++E   V     G +  +L +   FD I+LD+ L    G+
Sbjct: 1   MRILLIEDNEELAGTIVDRLRAEGHCVDRESDGNEANDLLRHSLFDIILLDVNLPGKSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR+LR    +TPV IL+  S I+++V GL +GADDY+ KPF+  EL+AR R + RR  
Sbjct: 61  EILRSLRARGDATPVLILTARSQIDERVVGLDAGADDYMVKPFDFRELLARCRVLARRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++ V G LS +  AK   V G  + L  +E Q++E+L       LTKE   + LY 
Sbjct: 121 GTASNIFVAGGLSFDRAAKRAIVAGKDVDLRAREVQLLEILIDNLGRMLTKEEVADKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + P +  ++  + +LR+KL +       I+T  G GY+
Sbjct: 181 FDESPSMNAVEQIVTRLRRKLHDT---PLVIKTARGLGYM 217


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TP  +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|148975848|ref|ZP_01812637.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
 gi|145964593|gb|EDK29846.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHAIDGIDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 GH-AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +Q L +  G LS++L   T++     I +  +E+ +++LL     + ++K   L H+
Sbjct: 121 QPTSQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENPESVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+ +    K  I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFSKPLIHTLRGVGYVLK 223


>gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
 gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
          Length = 235

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 135/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  +  I       ++++ V D G DG+ L    ++DAIILD+ L  + G+
Sbjct: 1   MRLLIVEDEEKTSSYIRRAFLELSYSIDVADNGNDGLYLAIENDYDAIILDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L  LR  K  TPV +LS  S+++++VRGL+SGADDY+ KPF+  ELVARI+A+ RR  
Sbjct: 61  SLLEYLRAEK-QTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMS 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  + I+  DL ++L A+ V   G RI LT KE+ ++ LL+  +   L+K M  + +
Sbjct: 120 KDNNDPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+      K  + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRNKIDTPYAVK-LLYTVRGMGYVL 221


>gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 132/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L   +  +L S  F V+  + G D   L + +    ++LD+GL  I GF
Sbjct: 1   MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDA--LSQRFNAAVLVLDIGLPGIDGF 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  +TPV +L+   +I D+V GL+ GADDY+ KPF   ELVARI+A++RRS 
Sbjct: 59  EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L V G LS++   K  ++ G +I L+ +E+ ++E L    +  ++K+  ++ +  
Sbjct: 119 PQPAQLTV-GGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  +  ++V++ ++R K++++      I T+ G GY+L ++
Sbjct: 178 WGEDFTINAVEVYVSRIRLKIADSGVA---IRTIRGFGYMLEKS 218


>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 221

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ +   +   L++  + V     G DG+ +    + D ++LDLGL  IPG 
Sbjct: 1   MAILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGLPGIPGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + S PV +L+   ++ D+V  L +GADDY+ KPF+  EL+AR+RA   R R
Sbjct: 61  EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRA---RLR 117

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  Q    ++  G + ++L A+T  V+G  ++L+ +E+ ++E+L        ++   L+ 
Sbjct: 118 GGGQERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    +    +++V++ +LR+KL     G   I+TV G GY L + A+
Sbjct: 178 VWGYDFDGASNVVEVYVSQLRRKL-----GSERIQTVRGAGYRLGDGAR 221


>gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
 gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
          Length = 222

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/227 (39%), Positives = 129/227 (56%), Gaps = 15/227 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++EDD+ L H +   ++S     YV+D   DG E   L     +DA+ILD+GL  +
Sbjct: 1   MRILIVEDDRNLNHQLAEAVRSAG---YVSDSAFDGQEAYFLGSTESYDAVILDIGLPLL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+   R      PV +L+      DKV G+ +GADDY+ KPF+ EEL+AR+RA++R
Sbjct: 58  DGISVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVVKPFHLEELMARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS GHA S +  G  +V LD KT  V V G  I LT  E++++  L       ++K    
Sbjct: 118 RSAGHATSALCCG--AVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCGRVVSKTELT 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            HLYD   + +   ++VF+ +LR+KL     G + IET+ G GY +R
Sbjct: 176 EHLYDQDFDKDSNTVEVFVGRLRRKL-----GVDVIETIRGMGYRVR 217


>gi|332652328|ref|ZP_08418073.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
 gi|332517474|gb|EGJ47077.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
          Length = 225

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  +++ + +   +   G DG++     ++D IILD+ L  + GF
Sbjct: 1   MRILIVEDETRLAETLRQLMEDQRYQADMVGDGADGVDYGLTGQYDLIILDVMLPKVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A ISTP+ +L+    I DK+ GL  GADDY++KPF+  EL+AR+RA+ RR  
Sbjct: 61  EVARRLRSAHISTPILMLTARDDISDKIGGLDCGADDYMTKPFDSGELMARVRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDLS+   ++ + V    + L  KE++++ LL +     ++KE  +  ++ 
Sbjct: 121 EVLGDVLKVGDLSLECSSRLLRVGERSVRLGFKEFEVMRLLMVNSRAVVSKETLIAKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V+I  LRKKL+   G +  I TV   GY L
Sbjct: 181 LDSEAEDNNVEVYISFLRKKLAY-LGSRIAISTVRKVGYYL 220


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 73  QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli]
 gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli]
          Length = 224

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 134/223 (60%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD +L   I+  LK   + V ++TD G+  +   K   FD I+LDL L  + G
Sbjct: 1   MRILLVEDDGSLGDGIQKGLKQYGYTVDWLTD-GQTALSSIKTESFDVILLDLNLPKLSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118
             VLR +R A I+TP+ IL+   S+ED+V+GL SGADDY SK  F+ +EL ARIRA+ RR
Sbjct: 60  LSVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRR 119

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S  + A  L+   D+ +N  A TV ++G  ++L+ +E+ +++ L       ++++     
Sbjct: 120 SSNNRASPLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDSLNQC 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           LY   D+ +   ++V +  LRKKL++     ++I T+ G GY+
Sbjct: 180 LYGWEDDIDSNTLEVHVHNLRKKLAHT----HFIRTIRGVGYM 218


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 635

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 2/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD + + +I   L  + + V   + GE G+EL + + +D I+LD+ L  + G 
Sbjct: 1   MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  +  TP+ +L+  +   D V GL++GADDY+ KPF+  EL+ARI+A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N     V  QG  +HLT  EY ++EL         ++++ ++ ++ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
               P  + I   I  LR+KL      +N I+TV+G GY L E    E   +LE+
Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE--LQECLSFLES 233



 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LI+DD      ++  L    FNV      +    + +    D +ILDL +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
            +A+R      S P+  LSG    E   + L  GAD Y+ K    EEL+
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618


>gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
          Length = 219

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   D G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHADNGIDGAFLGEEENFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++ PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+  ++RR  
Sbjct: 61  HVLGQWRQKGLAMPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +++    +S+++D + V  V G  I LT  EY+++  L +  +  ++K      +Y
Sbjct: 121 GRADNVLQHAGVSLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L+E
Sbjct: 181 EEDQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKE 219


>gi|326387977|ref|ZP_08209581.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207478|gb|EGD58291.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 218

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  LA  +   L+   F V V     +G       +  A+ILDL L D  G 
Sbjct: 1   MRLLLVEDDVQLASRLGERLRGAGFAVDVATNRAEGEAWPDLDKIGAVILDLNLPDGSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R  +I+ PV IL+   S +DKV GL +GADD++ KP   EEL+AR+ A+ RR +
Sbjct: 61  DLLRYWRARRIACPVIILTARGSWQDKVEGLNAGADDFVVKPVRFEELLARLHAVWRRQQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + I  G L +N   K  E++G  + L+  E++++ L        L++   ++HLYD
Sbjct: 121 GAADAWIEKGALRLNPADKKAELEGEELALSRMEFRLLHLFLRHAGKPLSQSEIMDHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   ++V I +LR+K+     G   IET+ G GY L
Sbjct: 181 LDSERQANAVEVLIGRLRRKI-----GSERIETLRGFGYRL 216


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+ +E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 228


>gi|320157931|ref|YP_004190309.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
 gi|319933243|gb|ADV88106.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O]
          Length = 218

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L  S+   L    + V   + G       K  +F A+ILDL L DI G 
Sbjct: 1   MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R A  + PV IL+    I+D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G+LS++L  +++  Q   + LT  E++++  L       ++K+     L+ 
Sbjct: 121 GSATEVIEVGELSLSLSEQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D      I+V I  LRKK  N       I+ + G GY++
Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216


>gi|304398496|ref|ZP_07380369.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308189007|ref|YP_003933138.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|304354001|gb|EFM18375.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308059517|gb|ADO11689.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 219

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD+ +  +++  L+   ++V   D   DG+     +    +  ++LDLGL   
Sbjct: 1   MRVLLVEDDEMIGANLQQALQGAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR  R    +TPV IL+   ++  +++GL SGADDY+ KPF+ +E++AR+RAI R
Sbjct: 58  DGLQVLRRARGRGDATPVLILTARDTVAQRIQGLDSGADDYLLKPFDLQEVMARMRAITR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G A S++ +GD+ +++  + V  +G R  LT +EY ++  L  R    L++E   N 
Sbjct: 118 RSHGAADSVLGSGDVQLDMMTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y   DE     +DV I  +R+KL N     + I  V G G+
Sbjct: 178 IYGWGDEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 214


>gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 136/221 (61%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD++LA  I     S  F++   D GEDGI L +   F  IILD+ L  I GFE
Sbjct: 7   RLLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQYFLLIILDVMLPGIDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR +R +  +TP+ +L+   + +D++ GL+SGADDY+ KPF  EEL+ARI++I+RR   
Sbjct: 67  VLRRIRYSS-NTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRRVHP 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  S  + GDL+VN   +++ ++   + LTG E+ ++++L  +     ++E  ++ ++
Sbjct: 126 RENLASFTL-GDLTVNNLERSITLEDRPLDLTGAEFHLLKVLLSQPGMAFSREELVHRIF 184

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            GR+   + + +D  +  LRKKL   A GK+  +++   GY
Sbjct: 185 -GREPSGLDRSVDNLVNNLRKKLGAHANGKDRFKSIRNVGY 224


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  I   L+   F+V     G++G+E      FD +++DL L ++ GF 
Sbjct: 6   RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPELDGFT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR +R      P+ I+S  S  E KV+G   GADDYI+KPF+ EEL ARI + +RR R 
Sbjct: 66  LLRTIRKTH-EIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      ++  +    LS++   K V + G  ++LT KEY+++ LL+     T +KE  L
Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++   D      + V I  LR KL + +    +I+TVWG GY      KDE
Sbjct: 185 EMIWKQEDISASNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRFIGEDKDE 237


>gi|332531173|ref|ZP_08407086.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
 gi|332039280|gb|EGI75693.1| two component transcriptional regulator, winged [Hylemonella
           gracilis ATCC 19624]
          Length = 239

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGE-DGIELCKFYEFDAIILDLGLTDIP 58
           MRIL+ EDD+ LA  +   L+     V +V +  E D   + +  +FD +ILDLGL  + 
Sbjct: 1   MRILIAEDDQVLADGLLRTLRGSGAAVNHVANGAEADAALMTQPSQFDLLILDLGLPKLH 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVL+ LR    S PV IL+   S+ED+V+GL  GADDY++KPF+ +EL AR+RA+ RR
Sbjct: 61  GLEVLQRLRARGASLPVLILTAADSVEDRVQGLDYGADDYMAKPFSLQELEARVRALTRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G A  LI  G L          + G  + L+ +E  ++E+L  R    ++K+  ++ L
Sbjct: 121 GLGAASGLIRHGPLVYGQAGHVATIDGRLVELSARELGLLEVLLQRCGRLVSKDQLVDRL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +E     I+V+I +LRKK+    GG   I TV G GY L
Sbjct: 181 CEWGEEVSNNAIEVYIHRLRKKIE---GGPIRIATVRGLGYCL 220


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. W3110]
 gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR
 gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655]
 gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K12 substr. W3110]
 gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1]
 gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +   +V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +E  L++  + V     GE+        ++ AI+LDLGL  + G 
Sbjct: 1   MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S+I  GD++++     V+V G  ++L+  EY++I  L L +   +++     ++Y 
Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V I ++RKKL     G   IET  G GY++
Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYLV 216


>gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   + +  D ++LD+ L D+ GFE
Sbjct: 12  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 72  VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTST 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 GEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 192 NYDFRGDDNIVESYISYLRRKVDNVE--PRLIHTLRGVGYVLRKPA 235


>gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   + + L    F        E+       +EFDA++LDL L D  G 
Sbjct: 1   MRVLIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR  + +TPV +L+    + D++ GL +GADDY+ KPF+ +E+ AR+RA+VRR+ 
Sbjct: 61  DVLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+LI    L ++   + VE QG  I L+ +EY ++  L +     L++      LY 
Sbjct: 121 GRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++E E   ++V I  LR KL     G   I+TV G GY L
Sbjct: 181 WQEEVESNAVEVHIHHLRGKL-----GPGMIQTVRGIGYRL 216


>gi|254469487|ref|ZP_05082892.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
 gi|211961322|gb|EEA96517.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 134/227 (59%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED++ +A +I+  L+   F V +V D  L ED +   KF   D +ILDLGL   
Sbjct: 1   MRVLLVEDERLIADAIKAFLERHEFIVDWVDDGLLAEDALRTGKF---DLVILDLGLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E LRA+R  K   P+ ILS   + ++++ GL  GADDY++KPF+ EEL+AR RA+VR
Sbjct: 58  DGLEFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  + L+  G L+++LD K     G  + L    ++++ +L  R+   ++K   +  
Sbjct: 118 RSVGRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDLMEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E  +++V++ ++R+K ++       I T+ G GY++ E+
Sbjct: 178 LYGWEENAESNVLEVYVSQIRRKTTS-----KLIRTIRGVGYIVDED 219


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|187918765|ref|YP_001887796.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717203|gb|ACD18426.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 232

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  LA  +  +++ E+F +     GE    L     +DA++LDL L  I G 
Sbjct: 1   MKLLLVEDDADLARWVMNLMQVEHFVIDWAQNGEQAETLLGLQCYDAVLLDLRLPGIGGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL  LR  + + PV +L+   S +DKV    +GADDY+ KPF+  ELVARI+A++RR +
Sbjct: 61  DVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     I  GDL    D++   +Q   + L  +E+ ++E L L++  T++K   ++ ++
Sbjct: 121 AGDKGQSIECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKVF 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              DEP    ID++I +LRK L   A     I T+ G GY+LRE    E 
Sbjct: 181 TLDDEPSADAIDIYIHRLRKHL---AASSAKIMTLRGLGYILREAEPREA 227


>gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           STEC_7v]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-NTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   + L L+ E F V     G + +   +  +FD I+LDL L  + G  +
Sbjct: 4   ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A + TP+ +L+  +   DK+ GL+ GADDYI+KPFN  EL+ARIRA++RR    
Sbjct: 64  CREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           SR      +V GDL ++   +  EV G  + LT +EY ++ELL+       T++  L+ +
Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + ++R+KL        Y+ T WG GY L
Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYL 225


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|157377007|ref|YP_001475607.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319381|gb|ABV38479.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 224

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +E  LK   +   VTD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKAAEADYLLKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   I+TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A+++R+ 
Sbjct: 61  ELLERWRNQGINTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A    + L  +G ++++ + ++V V  +   LT  E++++++  +     L+K    +
Sbjct: 121 GKASLPSKELSFSG-VTLDENQQSVMVGSNLFELTAMEFRLLKIFLMSPQKLLSKSQLTD 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LY   DE E  +++V++  LRKKL     GK  IET  G+GY+ 
Sbjct: 180 KLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIF 219


>gi|326692942|ref|ZP_08229947.1| two-component system regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 137/222 (61%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  LA +I   L+ +  +V+  D G DG    +   +D II DL L    G 
Sbjct: 5   IKILLIEDDVNLADNIVGFLQ-DFADVHAVDNGLDGEFEGQESPYDLIISDLMLPGENGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   I TPV IL+  SS++DK+ G   GADDY++KPF +EEL+ R++A++RR+ 
Sbjct: 64  EVIKHLREKNIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLLRVKALLRRAG 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +++ + I  GD+ +NL+ + V+V G  + L GKE+ ++  L+  KN  +T++   + ++
Sbjct: 124 VYSEDNTIAVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + ++++++  LR+KL  A G  + I+T+   G++L
Sbjct: 184 GIDSDTTINVVNIYLNNLRRKLE-AVGQHDLIKTLRNIGFIL 224


>gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 227

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L  ++ + L++ +++V     G   + L   ++ D ++LDLGL D+ G +
Sbjct: 3   RVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGLPDMDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ALR      PV +LS   + E+KV  L +GADDY++KPF+ +EL+AR+RA VRR+  
Sbjct: 63  VIKALR-GWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRRTEA 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L+ T D +V+L AK     G  +HLT  E+ ++E+L       +T+   L  
Sbjct: 122 GPTAPETTLVKTDDFTVDLTAKKAHRDGRDVHLTPTEWHLLEILVTNPGRLVTQRHLLQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +   + V++ +LR+KL        Y+ T  G GY   E
Sbjct: 182 VWGASQSNKTNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFEE 227


>gi|187476614|ref|YP_784637.1| two-component response regulator [Bordetella avium 197N]
 gi|18307419|emb|CAD21032.1| putative two-component regulator protein [Bordetella avium 197N]
 gi|115421200|emb|CAJ47705.1| two-component response regulator [Bordetella avium 197N]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++E  L++   +V     G   ++  +   +DA++LD+ L    G 
Sbjct: 1   MRILLVEDNPDLGDAVESKLRNAGHSVQWVRDGLAAVQWGQAEPWDALLLDISLPGKDGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A + +PV +++  + IEDKV  L  GADDY+ KPF+  EL AR+RA++RR  
Sbjct: 61  AVLRELRAAGMESPVLVMTARAEIEDKVDMLDLGADDYLVKPFDLRELEARLRALMRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+ + G+L+++   + V V G  + L  +E++++E+L  R+  T+ KE  +  ++D
Sbjct: 121 GQTSSVAMFGNLTLDSANRGVWVNGQPLELGRREFRLLEILLTRQGQTVAKERLMAQVFD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+  +  +++ I +LR+KL++A+     I TV G GY +R++ 
Sbjct: 181 A-DDVSLNALELLISRLRRKLADAS---VDIVTVRGVGYQVRQDG 221


>gi|77460884|ref|YP_350391.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384887|gb|ABA76400.1| tw-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 225

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V     G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDRARDGVEGLHLALESDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDEK-LLHTIRGMGYVL 219


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR
 gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 219

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+ V + + G+ G++      +D  ILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR +  
Sbjct: 64  CRQIR-QKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QPD 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L + G + ++ DA  V V GH++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 122 KDVLDING-IIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219


>gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA  I   L      V       D         FDA++LDL L D  GF
Sbjct: 1   MRILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPDGSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    +TPV +L+ +    D+VRGL  GADD++ KPF+ +EL AR+RA+VRR  
Sbjct: 61  DVLATLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G ++++    +V +    + ++ +E+ ++ +L  R     +K      LY 
Sbjct: 121 GRASPLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V+I  LR KL     G++ IETV G GY LR  A
Sbjct: 181 WQEEIESNTVEVYIHNLRAKL-----GRDLIETVRGLGYRLRVPA 220


>gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046]
 gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G]
          Length = 222

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 19/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYTC-------DGVTTARMAEQSLEAGHYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             N +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|217970326|ref|YP_002355560.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507653|gb|ACK54664.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 221

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD AL   +   L +E + V +   G DG  L     +DA+ILDLGL   PG 
Sbjct: 1   MRLLVVEDDAALGERLRTRLVAEGYAVDLARDGIDGAHLGATEPYDAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A    PV IL+      ++V GLQ+GADDY+ KPF+ EEL+ARI+A++RR+ 
Sbjct: 61  TVLREWRAAANRVPVLILTARDGWAERVEGLQAGADDYLGKPFHVEELLARIQALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + +  GD  ++ +A+   V+  G+   LT  E++++       +  L+K     H+
Sbjct: 121 PVPDTELRAGDWRLD-EARQCLVDRAGNEQALTATEFRLLRYFMRHPDEVLSKTRLSEHV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           YD   E +  +I+V++ +LR  L N       IET  G+GYV R
Sbjct: 180 YDYDAERDSNVIEVYVRRLRGLLGN-----ERIETRRGQGYVFR 218


>gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 229

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL IED+  +A+ +   LK + F V   D G++G       E+D I+LD+ L    G 
Sbjct: 1   MHILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR A  + PV +L+  + ++D++ GL  GADDY+SKPF  EEL+ARI A++RR  
Sbjct: 61  AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+++  G L+++   + V      + LT +E+ ++E L        T+   L H++ 
Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               P   ++DV + +LRKK+   A G ++I++V   GY+ R++ K
Sbjct: 181 YDFNPNTNLVDVCVQRLRKKIEKVA-GDSWIDSVRSVGYLFRKSGK 225


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++LKSE F  +    G+  +E  +    D I+LDL L    G E
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ +L+  S   D V+GL+SGADDY+ KPF  +ELVAR+RA +R S  
Sbjct: 64  VCREIR-EESGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+S+++   TVE  G  + LT  E++++  L+ +     ++E  L  ++  
Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+       + + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGY 220


>gi|188532493|ref|YP_001906290.1| DNA-binding transcriptional regulator BasR [Erwinia tasmaniensis
           Et1/99]
 gi|188027535|emb|CAO95382.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 220

 Score =  139 bits (351), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  +   PV IL+   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  HLLRQWRKEQQDLPVLILTARDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+S+NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 121 GKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V I  LR+KL     GK  I+TV G GY L E
Sbjct: 181 WQDDTSSNTLEVHIHNLRRKL-----GKERIKTVRGVGYRLEE 218


>gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++      +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+VRR 
Sbjct: 61  LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + GH + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219


>gi|119384056|ref|YP_915112.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119373823|gb|ABL69416.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 220

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L++EDD  L+  +   ++   F   +   G  G  L     +D  ILDLGL  +PG 
Sbjct: 1   MKCLIVEDDPMLSTQLAAAMRDGGFACDIAADGTQGEFLGSTEAYDLAILDLGLPGLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++ PV IL+      DKV G ++GADDY  KPF  EE+V R + ++RR+ 
Sbjct: 61  EVLTRWREGGVTMPVLILTARGDWTDKVAGFRAGADDYAVKPFRLEEVVIRAQTLLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I  G L ++     +   G  + LT  E +++  L   +N  +++    +HLYD
Sbjct: 121 GHAQAVIKAGPLRLDTQLGVITRNGLALKLTAFETRILAYLIHHQNRVVSRSELSDHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + + K I+V I +LRKK+     G   IET  G GYVLR  A
Sbjct: 181 SAADRDFKSIEVVIGRLRKKI-----GDGLIETRRGEGYVLRTAA 220


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59
           +L+IED+K +A  IEL L +E    Y T++  DG+  L KF E   D +ILDL L  + G
Sbjct: 7   VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 64  LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++
Sbjct: 123 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 182

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                PE      ++DV+I  LR+KL    G +  I TV G GYVLRE
Sbjct: 183 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 224


>gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +AH ++L L    + V     G  G+   +    D +ILDLGL D+ G E
Sbjct: 3   RILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    P+ +L+   ++E KV  L  GADDYI KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIR-AGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  I  G L V+L  + V  +G  + L+ KE++++ LL  R     +++    HL+  
Sbjct: 122 GEQ--ISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + E +  ++DV I  LR KL   AG   Y+ TV G GY LR+ 
Sbjct: 180 QLERDSNVVDVHIANLRAKLRE-AGAYGYLRTVRGVGYALRQR 221


>gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 225

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V +   G +G+ +    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED+++GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL +    +  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVL 219


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 122/217 (56%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD++L  +I +ML+ E F       G DG E     + D +++DL L  + G E+
Sbjct: 15  ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTEI 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+++TP+ +LS M    DKV  L+ GADDY+ KPF   EL ARIRA++RR+   
Sbjct: 75  CKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRASTD 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ ++   ++ V+ + + V+ +G  + LT  EY ++       +  LT++M LN ++   
Sbjct: 135 ARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWGYE 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             P  + +D  + KLR+KL        +  TV G GY
Sbjct: 195 FFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGY 231


>gi|119384325|ref|YP_915381.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119374092|gb|ABL69685.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 220

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L++EDD  L+  +   ++   F   +   G  G  L     +D  ILDLGL  +PG 
Sbjct: 1   MKCLIVEDDPMLSTQLAAAMRDGGFACDIAADGTQGEFLGSTEAYDLAILDLGLPGLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++ PV IL+      DKV G ++GADDY  KPF  EE+V R + ++RR+ 
Sbjct: 61  EVLTRWREGGVTMPVLILTARGDWTDKVAGFRAGADDYAVKPFRLEEVVIRAQTLLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I  G L ++     +   G  + LT  E +++  L   +N  +++    +HLYD
Sbjct: 121 GHAQAVIKAGPLRLDTQLGVITRNGLALKLTAFETRILAYLIHHQNRVVSRSELSDHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + + K I+V I +LRKK+     G   IET  G GYVLR  A
Sbjct: 181 SAADCDFKSIEVVIGRLRKKI-----GDGLIETRRGEGYVLRTAA 220


>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
 gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 137/234 (58%), Gaps = 15/234 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           MR+LL ED++ L+ ++ ++LK  N++V   D   DG E   + E    +D +ILD+ +  
Sbjct: 5   MRLLLAEDEEDLSRALVMVLKHNNYSV---DAVYDGAEALDYLENGGNYDGVILDIMMPK 61

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G  VL+ +R    S PV +L+  + I+D+V GL SGADDY+ KPF+ +EL+ARIRA+ 
Sbjct: 62  MDGITVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMT 121

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKE 172
           RR      +++  GD+++N    T ++ G      I L GKEYQM+E+L       +  +
Sbjct: 122 RRQTDTTDNVLTFGDIALN--RSTYQLTGPENPEGIRLAGKEYQMLEMLMSNPGQVICPD 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
           +F++ ++    E E  ++ V+I  LRKKL+ + G +  I    G GY L ++NA
Sbjct: 180 LFMDKIWGYDSEAEQNVVWVYISYLRKKLT-SIGSQVKIRAARGLGYSLEKDNA 232


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  ++  L+ +++ V +   G+ G ++   Y FD IILD+ L  + G+
Sbjct: 1   MKILIVEDEPKLAGFLKRGLEEQSWEVELAYDGQVGKKMASNYRFDVIILDVNLPLLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR   ++TP+  L+ + +I+DK+ G ++G DDY+ KPF   EL+ARI+ + +R+ 
Sbjct: 61  DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  +  ++   DL +NLD K     G+RI LT KE+ ++E L   +   +++      +
Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D R +    +IDV+I  LRKK+      K  I TV G GY+ +E
Sbjct: 181 WDIRFDTGTNVIDVYINFLRKKVDKDYPTK-LIHTVVGMGYIFKE 224


>gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC
           9905]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|194367537|ref|YP_002030147.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194350341|gb|ACF53464.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 219

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD ALA  +  +L+   + V+    G +  E+ +  +  A I+DLGL  + G 
Sbjct: 1   MRILLAEDDTALAQRLLPLLEQAGYVVHAVTDGREAEEIGQIEDLQAAIVDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DK+ G  +GADDY++KPF  +ELV R+RA++RRS 
Sbjct: 61  SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++++A   E+ G  + L+ +E++++          + ++     ++D
Sbjct: 121 GHASPRLRCGPLQLDVNAGRFELDGQALPLSPQEFRLLSYFIHHSGQVIGRDRLGEQVFD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +P+   +DV + ++R+KL     G + I+TV G+G+ L
Sbjct: 181 GGHDPDSNALDVLLGRVRRKL-----GIDLIQTVRGQGWRL 216


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 220

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD  L   I+  L++  F V       +G+   K  EFDA++LDLGL D  G 
Sbjct: 1   MHILLIEDDALLGDGIQAGLQAMGFTVAWVTRAREGLAAWKSVEFDALVLDLGLPDQDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L   R A ++ PV IL+   +++D++ GLQ GADDY+ KPF+  EL AR++A++RRSR
Sbjct: 61  QALCQWRDAGLTAPVLILTARDAVQDRIDGLQRGADDYLVKPFDLGELAARLQALLRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  LI  G + V+   + V +    + L  +E  ++  L   +   LT +   + +Y 
Sbjct: 121 GQASPLIEHGRVRVDPFRQQVWLADQEVELQRREMALLLALLQSRGRLLTPDQLADRVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   + V I  LR+KL     G   +ETV G GY L
Sbjct: 181 WVDGVESNALAVHIHNLRRKL-----GSGIVETVRGGGYRL 216


>gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L +ED+  +A+ ++  LK + F V   D G++G       E+DAIILD+ +    G 
Sbjct: 1   MNVLFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMVPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + PV +L+  + ++D++ GL  GADDYI+KPF  EELVARI A+VRRS 
Sbjct: 61  SILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSI 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+V G L ++   + V      I LT +E+ ++E L        T+   L H++ 
Sbjct: 121 GDRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P   ++DV I ++RKK+ +      +IE++ G GY  R
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPVDEAGWIESIRGVGYRFR 221


>gi|257790500|ref|YP_003181106.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325829924|ref|ZP_08163382.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
 gi|257474397|gb|ACV54717.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|325488091|gb|EGC90528.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
          Length = 226

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 137/232 (59%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L++EDD+ L++++   L+    + Y  D   DG E   FY     +D ++LD+ L +
Sbjct: 1   MKLLIVEDDRLLSNALARSLR----DAYAVDQAFDGEE-GLFYAAQDVYDLVVLDVMLPE 55

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             GF VL ALR   + TPV +L+  S+  DK+RGL+SGADDY++KPF+++EL+ARI AI+
Sbjct: 56  RDGFSVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAIL 115

Query: 117 RRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G     IV   +L+++   +   +    + L GK+Y ++E L   + + ++KE   
Sbjct: 116 RRTTGRRDVGIVAFKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLF 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + ++    +    +++V++  LRK L+   G   YI+T+ G GY+  E+  D
Sbjct: 176 DKIWGFMSDTSSNVVEVYVSALRKALA-PTGYDRYIKTIRGAGYLFTEDDHD 226


>gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   +   L+   F V +V D GE      +   ++A +LDLGL    G
Sbjct: 1   MRILLAEDDSLLGDGLRAGLRQLGFQVDWVRD-GEAAERELRAQPYEAAVLDLGLPRKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL A+R + + TPV +L+   ++ +++RGL +GADDY+ KP +  EL AR+RA+VRR+
Sbjct: 60  LDVLAAVRRSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q  +   D+ ++  ++TV   G  + L+ +E+ +++   L  +  L++E     LY
Sbjct: 120 HGQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E   I+V I  LR+KL     G   I TV G GY+L++ 
Sbjct: 180 SWGQEVESNAIEVHIHNLRRKL-----GPALIHTVRGVGYMLQKG 219


>gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 219

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   +   L    F V +V D GE      +     A +LDLGL    G
Sbjct: 1   MRILLVEDDPLLGDGLRAGLTQAGFQVDWVRD-GEAASRELRSAVHAAAVLDLGLPRKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL   R A +  PV +L+   ++ D+V GL SGADDY+ KP + +EL AR+RA++RR+
Sbjct: 60  LEVLAETRRAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAARLRALIRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q L+  G++ ++  A+TV   G  + L+ +E+ ++  L L     LT+E    HLY
Sbjct: 120 HGQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTREQLEQHLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   ++V +  LR+KL     G   ++TV G GY+L
Sbjct: 180 RWGREVESNAVEVHVHHLRRKL-----GAELVQTVRGVGYLL 216


>gi|322385478|ref|ZP_08059122.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270216|gb|EFX53132.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 224

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + + D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   SI+DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGVSTPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +  V G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLVDGREVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL   A   N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTAFANN-LQTLRSVGYILK 221


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + +++  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIPG 59
           +L+IED+K +A  IEL L +E    Y T++  DG+  L KF E   D +ILDL L  + G
Sbjct: 16  VLVIEDEKDIARFIELELAAEG---YATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDG 72

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 73  LEVARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV 131

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++
Sbjct: 132 NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW 191

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                PE      ++DV+I  LR+KL    G +  I TV G GYVLRE
Sbjct: 192 -----PEYTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLRE 233


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLRV-RSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|216538|dbj|BAA03143.1| BasR [Escherichia coli]
          Length = 222

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|221069936|ref|ZP_03546041.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714959|gb|EED70327.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 257

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 129/233 (55%), Gaps = 15/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A  +   L   ++ V V     +         FDA++LDLGL+D  G 
Sbjct: 27  MRILVVEDNEGIAAGLRANLMQRSYAVDVCASVAEAWHALSTERFDAVLLDLGLSDGDGS 86

Query: 61  EVLRALRV----------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           EV+R LR+             +TPV IL+    ++D+V GL  GADDY+ KPF+ +EL A
Sbjct: 87  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 146

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+RA++RR+ G A  +I   DL V+  A+T+   G ++ ++ +E+ ++  L L +   L+
Sbjct: 147 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 206

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     HLY   D  E   ++V++  LRKKL     G+  I T+ G GY + +
Sbjct: 207 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGYFMPQ 254


>gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 243

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +A  I   L +  F V     G+ G+E     E D +++D  L  + G  V
Sbjct: 22  VLLVEDDSTIAEEIAAELTARGFKVLHEATGDAGLEAALRLEADVMVVDRLLPGLDGLSV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   I  PV +LS +S+++D+V GL++G DDY++KPF  EELVARI A++RR    
Sbjct: 82  IETMRQQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + ++L  + V   G  I L  +E++++E L  R    LT+ M L  ++  R
Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P   ++DV I KLR+K+ +  G +  IE++ G G+ LR
Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240


>gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39]
 gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
 gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli]
 gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli]
 gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli]
 gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli]
 gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli]
 gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli]
 gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli]
 gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI39]
 gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15]
 gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           AA86]
 gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|152995826|ref|YP_001340661.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836750|gb|ABR70726.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED + L  +I   L S    V +   G+   EL K+   D I+LDL L  + G 
Sbjct: 1   MRILVVEDTQVLGQAICERLTSLGHGVDLIGDGKRADELLKYQSVDLILLDLNLPGLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV IL+    IED++R L +GADDY++KPF+  EL AR RA++RR +
Sbjct: 61  QLLQKLRQRDDDTPVLILTARDQIEDRIRLLDAGADDYLTKPFDFGELEARCRALLRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A ++   G++ VN D++ V + G    +T +E++++E+        L+K+   +HL++
Sbjct: 121 GYATNITEHGNIVVNRDSRQVFIDGELTVITNREFRLLEIFLGHLGRVLSKDEITDHLFN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + P    I++++ +LRKK+     G   I T+ G GYV
Sbjct: 181 FNETPGPNAIELYVGRLRKKMGQ---GDLVISTLRGIGYV 217


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 135/224 (60%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  +++ L+ E ++V +   G  G+       +D IILDL L  + GF V
Sbjct: 5   ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLPGLDGFSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           LR LR  K STPV ILS    ++DKV GL  GADDY++KPF+ EEL+ARIR ++R+ ++ 
Sbjct: 65  LRELR-KKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAKS 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +A  L+  G   + +D  T EV+  G +I LT KE+++++ L +     LT+E  L +++
Sbjct: 124 NANKLVYDG---ITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  I+DV+I  LR K+      K  I+T+ G GY LR+
Sbjct: 181 GYNYIGETNIVDVYIRYLRSKIDEPFDNK-LIQTIRGVGYSLRK 223


>gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|326799051|ref|YP_004316870.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326549815|gb|ADZ78200.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD+ LA  I   L+ + F+V     G + + + +   FD IILD+ L D+ GF
Sbjct: 2   VKILLIEDDRRLASFIRKGLEEQLFSVSCVSSGYEALAVTQDIYFDLIILDIMLPDVSGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++  A+R  KI++P+ ILS + + E+KV+GLQ+GADDY+ KPF+ EEL+ARI A +RR  
Sbjct: 62  QICTAIRERKITSPLIILSALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKS 121

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                L V    DL VN+  +  +  G  I L+ +EY+++  L   +   +++      +
Sbjct: 122 FEKGILDVQKYADLEVNIAEQGAKRAGKNILLSPREYKLLLFLLNNRERVVSRTQIAEAV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D        ++DV+I  LR K+         I TV GRGY+L++
Sbjct: 182 WDIHFNTHTNVVDVYINYLRNKIDKGFAAP-LIHTVKGRGYMLKQ 225


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TP+  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 223


>gi|311104579|ref|YP_003977432.1| transcriptional regulator TctD 2 [Achromobacter xylosoxidans A8]
 gi|310759268|gb|ADP14717.1| transcriptional regulatory protein TctD 2 [Achromobacter
           xylosoxidans A8]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+     V   + G     + ++  FD +ILD+GL  + GF
Sbjct: 1   MRILVIEDDADLADALVRRLRRLGHAVDCQNDGLSADGVLQYETFDLVILDIGLPRMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR     TPV  L+    IED+V  L +GADDY++KPF+  EL AR RA++RR  
Sbjct: 61  DILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G+L ++  A+ V + G RI L  +EY ++E+L    N  ++K    + L+ 
Sbjct: 121 AQAAGVLRFGELVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIAHKLFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+V+I +LR+KL    G    IET  G GY+L
Sbjct: 181 FDDDAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLL 218


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  L   +   L+ E F V     G   +       +D +ILD+ L    G +
Sbjct: 3   RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   PV +++  S IEDKV GL +GADDYI+KPF+ +EL ARI+A++RR R 
Sbjct: 63  VCRKIRETK-DIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYR- 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I+ GDL ++  A  V  +G +IHLT +E+++++LL+   N  +++E     ++  
Sbjct: 121 KKEGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E    I+DV+I  LR KL +       I+TV G GY+LR
Sbjct: 181 SHEEGSNIVDVYIKNLRNKLGDKP--PRLIQTVRGYGYILR 219


>gi|88812632|ref|ZP_01127879.1| two-component system regulatory protein [Nitrococcus mobilis
           Nb-231]
 gi|88790048|gb|EAR21168.1| two-component system regulatory protein [Nitrococcus mobilis
           Nb-231]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 132/219 (60%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L+IEDD+ L   ++  L S    V     G +G  +   Y  D  ++DLGL  + G 
Sbjct: 1   MRALIIEDDRHLLEQLKEHLASAGLVVDTAADGREGCHMAIEYPLDVAVIDLGLPHVSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++A R A    P+ IL+  +  +DKV GL++GADDY+ KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  EIIKATRAAGRRFPILILTARTRWQDKVAGLEAGADDYLVKPFHPEELLARLRALLRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L++ G + +++ ++ V + G  + LTG EY+++E L L     ++K     HLY 
Sbjct: 121 GWAQPLLICGPVRLDISSQAVMLDGRPVALTGFEYRVLEYLMLHAGEVVSKTTLTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VF+ +LR+KL +  G    IET+ GRGY
Sbjct: 181 EDGDRDSNVIEVFVRRLRRKL-DPDGRLAAIETLRGRGY 218


>gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 EDL933]
 gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. Sakai]
 gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536]
 gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           E24377A]
 gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS]
 gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC
           8739]
 gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           SMS-3-5]
 gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1]
 gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989]
 gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           UMN026]
 gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp.
           4_1_40B]
 gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O157:H7 str. FRIK966]
 gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185]
 gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088]
 gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302]
 gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736]
 gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system
           member [Escherichia coli O157:H7 str. EDL933]
 gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli O157:H7 str. Sakai]
 gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli]
 gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli]
 gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli]
 gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli]
 gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli]
 gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli]
 gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli]
 gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli]
 gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli]
 gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli]
 gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli]
 gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli]
 gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli]
 gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli]
 gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli]
 gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli]
 gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli]
 gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli]
 gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli]
 gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli]
 gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli]
 gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli]
 gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli]
 gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli]
 gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli]
 gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli]
 gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli]
 gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli]
 gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli]
 gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli]
 gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli]
 gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli]
 gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli]
 gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli]
 gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli]
 gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli]
 gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli]
 gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli]
 gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536]
 gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS]
 gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A]
 gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5]
 gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli 55989]
 gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI1]
 gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli UMN026]
 gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BL21(DE3)]
 gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. TW14359]
 gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088]
 gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185]
 gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302]
 gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli W]
 gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           3431]
 gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           CDC 74-1112]
 gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           EC4100B]
 gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           EPECa14]
 gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           E128010]
 gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           LT-68]
 gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1180]
 gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1357]
 gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1044]
 gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           5216-82]
 gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 219

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+      +V +L  DGI+         +DAI+LDLGL  +
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEQSG---WVAELSSDGIDALYRATSEPWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +R
Sbjct: 58  DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+A  +I  GDLS++     V  QG  + LT  E++++  L    +  +++   + H
Sbjct: 118 RSTGNASPVIQAGDLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y    + +   I+VFI ++R+K+     G + I+TV G GY
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGY 214


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TP+  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   ++  L  E++       G D ++     ++D IILD+ L  I G 
Sbjct: 1   MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R     TPV  L+    IED+V+GL  GADDY+ KPF+ EEL+AR+R ++RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++ ++K V     +I L+ KE+ ++E +   +N  L++E    H ++
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    ++DV+I  LRKK+    G K  I TV G GYVLR+
Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRK 222


>gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 228

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVMLPDLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR  +++ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++R  R
Sbjct: 61  QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLR--R 118

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A SL   I   DL ++L  +     G RI LT KE+ ++ELL+ R    L + +  + 
Sbjct: 119 GSAPSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +IDV I +LR K+ +    K  I TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKIDDNFEPK-LIHTVRGMGYVL 221


>gi|326801440|ref|YP_004319259.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552204|gb|ADZ80589.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K LA SI   L  EN+   +     +  E   F+ +D IILD+ L D  G 
Sbjct: 1   MKILVIEDNKELASSIHDYLAGENYICELAFSATEAREKLLFFTYDCIILDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  ++   I+  + I+S   +++DK++GL+ GADDY++KPF+  EL AR+RAI RR  
Sbjct: 61  ELLNLVKEEHINGSILIISAKGALDDKIKGLEEGADDYLTKPFHLPELHARLRAIHRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               ++I   ++++N +   +++ G  +  T KE++++    + KN  L+++   NHL+ 
Sbjct: 121 LDGNNIISFKEITLNTNTFELKIHGKALDATRKEFELLLYFLVNKNRVLSRQAIANHLWG 180

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D  D    V  +   +  LRKK+ N AGG +YI+T++G GY    N
Sbjct: 181 DYTDNLSNVDFVYQHVKNLRKKI-NMAGGDDYIDTIYGLGYKFNTN 225


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   +   + ++ DA++LD+ L D  G 
Sbjct: 23  VRVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+ 
Sbjct: 83  EVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTT 142

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 143 MSVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+   AG    I T+ G GYVLR
Sbjct: 203 VWNYDFGGQANVVELYISYLRKKVD--AGRDPMIHTMRGAGYVLR 245


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   +      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|294340536|emb|CAZ88920.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  +    L+     V +V D G   +   +  E++ ++LDLGL    G
Sbjct: 1   MRILLVEDDHMLGAATREALRDATHAVDWVLD-GASALSAAQGGEYELMLLDLGLPKRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ALR +  + P+ IL+   ++ED+VRGL  GADDY+ KPF   EL+ARIRA+ RR 
Sbjct: 60  LSVLQALRQSGSNLPILILAARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ ++  G L ++  ++ V  QG    LT +EY ++  L LR    L++    + +Y
Sbjct: 120 GGQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +E E   ++  I  LRKKL+      + I+ V G G++
Sbjct: 180 GWNEEVESNAVEFLIHSLRKKLA-----PDVIKNVRGVGWL 215


>gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR
 gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144]
 gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028]
 gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045]
          Length = 219

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+ V + + G+ G++      +D  ILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR +  
Sbjct: 64  CRQIR-QKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRR-QPD 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L + G + ++ DA  V V GH++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 122 KDVLDING-IIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
 gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
          Length = 222

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD+ L H +   ++   + VY +   GE+   L     +DA+ILD+GL  I G
Sbjct: 1   MRILIVEDDRNLHHQLAEAVRQAGY-VYDSAFDGEEAYFLGSTESYDAVILDIGLPYIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+   R    + PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+
Sbjct: 60  VRVVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARLRALIRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GHA S +  G++ ++     V V G  I LT  E++++  L    +  +++     HLY
Sbjct: 120 TGHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   ++VF+ +LRKKL     G + IET+ G GY +R
Sbjct: 180 DQDFDKDSNTVEVFVGRLRKKL-----GVDLIETIRGMGYRVR 217


>gi|160876979|ref|YP_001556295.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160862501|gb|ABX51035.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315269182|gb|ADT96035.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 224

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVTELEKQLKLAG---YVTDITDKALEADYLLKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G    +   +  G + ++   +TV+V      LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNTSSKQLSYGGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V +   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R +R  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCREIR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L++NL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWR-IKTVWGVGY 219


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+KA+   I+  L+ ++  V     GE+ +EL K  EFD I+LDL L  I G  
Sbjct: 10  RVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +++      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RR+  
Sbjct: 70  VCRQIREFS-NVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSF 128

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  +  +I+ GDL ++ D + + +    ++LT KE+ ++ELL +  N    ++  LN
Sbjct: 129 NLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLN 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + + +DV I +LR+K+ +      Y+ T WG GY
Sbjct: 189 IVWGYEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231


>gi|114330053|ref|YP_746275.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307067|gb|ABI58310.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 227

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEIKTGEYVRQGLVESGFIVDLARTGLDGHHLALTEDYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK +TPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALREAKSATPVLFLTARDSVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGA 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A S  +   DL +++  +    Q  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APALSDQLQVADLVLDIPRRRARRQEVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +A   K  I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDAFEPK-LIHTVRGMGYML 221


>gi|317489999|ref|ZP_07948491.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|316910997|gb|EFV32614.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 226

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 137/232 (59%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L++EDD+ L++++   L+    + Y  D   DG E   FY     +D ++LD+ L +
Sbjct: 1   MKLLIVEDDRLLSNALARSLR----DAYAVDQAFDGEE-GLFYAAQDVYDLVVLDVMLPE 55

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             GF VL ALR   + TPV +L+  S+  DK+RGL+SGADDY++KPF+++EL+ARI AI+
Sbjct: 56  RDGFSVLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAIL 115

Query: 117 RRSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G     IV   +L+++   +   +    + L GK+Y ++E L   + + ++KE   
Sbjct: 116 RRTTGRRDVGIVAFKELALHTRTQQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLF 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + ++    +    +++V++  LRK L+   G   YI+T+ G GY+  E+  D
Sbjct: 176 DKIWGFMSDTSSNVVEVYVSALRKALA-PTGYDRYIKTIRGAGYLFTEDDHD 226


>gi|296136300|ref|YP_003643542.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796422|gb|ADG31212.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 225

 Score =  139 bits (350), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  +    L+     V +V D G   +   +  E++ ++LDLGL    G
Sbjct: 1   MRILLVEDDHMLGAATREALRDATHAVDWVLD-GASALSAAQGGEYELMLLDLGLPKRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ALR +  + P+ IL+   ++ED+VRGL  GADDY+ KPF   EL+ARIRA+ RR 
Sbjct: 60  LSVLQALRQSGSNLPILILTARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ ++  G L ++  ++ V  QG    LT +EY ++  L LR    L++    + +Y
Sbjct: 120 GGQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +E E   ++  I  LRKKL+      + I+ V G G++
Sbjct: 180 GWNEEVESNAVEFLIHSLRKKLA-----PDVIKNVRGVGWL 215


>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 226

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   ++  LK+E + V V   G D I L    +F AIILDLGL D+ G 
Sbjct: 1   MRVLLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPDLNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR A + TP+ +L+   +++DKV GL+SGADDY++KPF  EEL+ARI A++RR  
Sbjct: 61  QVCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRS 120

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  +     +   DL +N +   V      I LT KE+ ++E         L++   L  
Sbjct: 121 GEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   ++DV+I +LR+K+ +    K  ++TV G GY L
Sbjct: 181 VWGYSADPLTNVVDVYIRQLRRKIDDDYELK-LLKTVRGFGYKL 223


>gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +V+++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL E+ +D
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFHPK-LIQTVRGMGYVL-EDPED 226


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|319784369|ref|YP_004143845.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170257|gb|ADV13795.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 225

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  +   L+  N+ V +   GED        +   +ILDL L  + G 
Sbjct: 1   MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV +L+  +S++ +V+GL  GADDY++KPF  EEL ARIRA +RR+ 
Sbjct: 61  EVLRMLRTRGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL  + + +   + G  + LT +E+ ++E L ++   T++K      +YD
Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEALALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I++++ ++RKKL    G +  I T+ G GY+LR++
Sbjct: 181 FETDADPSAIEIYVHRVRKKLD---GSRVQIATLRGLGYLLRQD 221


>gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   +E  L+   F V +  D  + G+ L     +  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL AR RA++RR+
Sbjct: 60  MDLLKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  LI  GDL+VN  A+T ++ G R+ LT +E+ ++  L   +    ++      LY
Sbjct: 120 QGRSVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + E E   I+V I  LR+KL     G   I TV   GYV+
Sbjct: 180 GWQQEIESNAIEVHISNLRRKL-----GAKLIRTVRNIGYVV 216


>gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 225

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+ +    ++D +I+D  +  + G 
Sbjct: 1   MRLLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPALSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A    P+  L+   ++ED + GL++GA+DYI KPF  EEL+ARIR +  RSR
Sbjct: 61  EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIR-VQLRSR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G +++N     V   G  + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDV+I  LR+KL  A G  N+I+T+ G GY++RE
Sbjct: 180 IHFDADTSVIDVYITFLRRKL-EAVGCNNFIQTIRGIGYIIRE 221


>gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli]
          Length = 222

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +   ++  L  E + V     GE G++L + +  D IILD  L  + G E
Sbjct: 4   RILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + P+ +L+   +++D+V+GL +GADDY++KPF  EEL+ARIRA++RR++ 
Sbjct: 64  VCQRLRTL-CNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL+++   +        I LT KEY ++EL        LT+EM  + ++  
Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E  ++DV+I  LR+KL  + G    + TV G GYVLRE  
Sbjct: 183 DFGGESNVLDVYIRYLRQKL-ESDGEPRLLHTVRGVGYVLRETP 225


>gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ +   I+  L    FNV     G +G+       +DA++LDL L +I G 
Sbjct: 1   MRILVIEDDRLIGDGIKAGLIKLGFNVDWFTQGREGMNALTSAPYDAVLLDLSLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV +++   ++E +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G ++++L ++ V   G  + L  +E  ++EL  +     LT+      LY 
Sbjct: 121 GQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRNQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V I  LR+KL N     ++I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGN-----HFIRTVHGVGYTL 216


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 227

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRIL++EDDK +   +   L+     V   D G DG+ +     FDAIILD  L   I G
Sbjct: 1   MRILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR     TPV  LS +  ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRG 120

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G   +  +  GDL ++L ++ V+  G +I L  +E++++E L       +T+ M L  +
Sbjct: 121 KGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I +LR+K+         + TV   GY+LR
Sbjct: 181 WDYHFDPQTNVIDVHISRLRQKIDKPF-DTPLLHTVRNAGYMLR 223


>gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  +   L+     V     G DG+ L     +DA+I+D  L  + G 
Sbjct: 1   MRILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +++ALR A  +TPV +LS +  ++D+VRGL++G DDY+ KP+   EL+ARI A+ RR S
Sbjct: 61  AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+      K++    I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVD-----KDFELPLIHTVRGAGYTLR 222


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+  +A  +   L  E + V V      G+       +DA++LD+ L   PGF
Sbjct: 17  VRVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGF 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR   I  PV +L+   +++D+VRGL SGADDY++KPF+ EEL+AR+RA+ RR  
Sbjct: 77  ELCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGP 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V G+L ++ +          ++LT KE+ ++E    +    LT+E+ L + +D
Sbjct: 137 LVSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    ++DV +  LR+K+    G ++ IETV G GY LR +A
Sbjct: 197 LAFEANSNVVDVHVRALREKIDRRFGVRS-IETVRGVGYRLRADA 240


>gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    I   DL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 IHEPLQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDANVVEVAIKRLRAKLDGPFDNK-LLHTIRGMGYVL 219


>gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   L+++ + V     G   I       +D ++LDLGL    G 
Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K   PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA+VRR  
Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQA 234

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+++I    L+++  A+ V ++G  + L+ +EY ++E L  R    L+K      +Y 
Sbjct: 235 GRAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG 294

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G   I TV G GY++
Sbjct: 295 WGEEIGSNTVEVYIHSLRKKL-----GAELIRTVRGLGYMM 330


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L  E F V  T  G   +EL +  E+DAI+LD+ L  + G 
Sbjct: 1   MRILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR  +I TPV +L+      D+  GL +GADDY++KPF+   LVAR+RA+VRR R
Sbjct: 61  RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL V+   +  E  G  + LT +E+ ++  L+ ++   + K   L+H++ 
Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G  E +V +++V++  LR+K+     G+  I TV G GY L +   
Sbjct: 180 GDFEGDVNVVEVYVSALRRKIDTPF-GRRTIHTVRGAGYRLEDTGS 224


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  ++  ++  L++EN+ V     GE+  E  +   +  ++LDL +  I G 
Sbjct: 1   MKLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R    + P+ I+S   +  DK  GL  GADDYI+KPF+  E++ARI+A +RRS 
Sbjct: 61  EVMQHIRTHS-TVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++    Q +++ GDL++NL   TVE  G +I LT KE+++++LL        TKE   +
Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +   ++V I +LR K+        YI TVWG GY L
Sbjct: 180 LIWNDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKL 224


>gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  +   L  +   V +   G DG  L  ++++D I+LD  L  + GF
Sbjct: 1   MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR+ K  TPV +L+    +ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  SVLRSLRILK-QTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++       RI LT KE+ ++ +++ R+   L+K      ++D
Sbjct: 120 AQEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    +++V I +LR K+ +A   +  + T+ G GYVL   A
Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFSQKLLHTIRGMGYVLEPRA 223


>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 624

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 127/233 (54%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  +N+ V +   GE G EL     +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR       + +L+   +  DKV GL +GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++  G  S+ LD  T EV    I  +LT KE+ +++L         ++   ++ L
Sbjct: 121 TALPPVLEWG--SLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQL 178

Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +   +D PE   I   I  LR+KL  A    ++IETV+G GY L+  + +++C
Sbjct: 179 WSAEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKALSHEQSC 231


>gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis
           R1]
          Length = 222

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 9/221 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   LK+  +       GE+   L     +DA+ILD+GL  + G 
Sbjct: 1   MRILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ 
Sbjct: 61  RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GHA + +  G  SV LD KT  V V G  I LT  E++++  L    +  +++   + HL
Sbjct: 121 GHATNSLSCG--SVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           YD   + +   I+VF+ +LRKKL     G + IETV G GY
Sbjct: 179 YDQDFDKDSNTIEVFVGRLRKKL-----GVDLIETVRGMGY 214


>gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
 gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +IDV I +LR K+ +A   K  I TV G GY L  +A D+ 
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDDA 227


>gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 222

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  I    +   F       G DG+   K   FDA ++D+ L  + GF
Sbjct: 1   MRILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR A +  P+ +LS   S+E K+ GL+ G DDY++KPF+  EL+AR+ A +RR+ 
Sbjct: 61  TVIEELRAAGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRRAS 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A++ ++T  DL+++L ++ V   G RI L   EYQ++E L   K   ++K   + H++
Sbjct: 121 CAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +    I++  +C+LR+K+ +    +  I TV G GYVL
Sbjct: 181 EYHFDTRTNIVESRVCRLREKI-DKPFARKLIRTVRGFGYVL 221


>gi|294139273|ref|YP_003555251.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293325742|dbj|BAJ00473.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 12/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +E  LK   +   VTD   +   L K  ++D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNALLVEELEKQLKQAGYVTDVTDKAAEADYLLKETDYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   + TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A+++R+ 
Sbjct: 61  ELLERWRNRGVMTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAH 120

Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A   + T +LS     ++ + ++V V+     LT  E++++++  +     L+K    
Sbjct: 121 GKAS--LPTKELSFSGVVLDENQQSVTVEDKNFELTAMEFKLLKIFLMSPKKLLSKSQLT 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LY   DE E  +++V++  LRKKL     GK  IET  G+GY+ 
Sbjct: 179 EKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIF 219


>gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/221 (40%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++L L    + V     GE+   L +   +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   I+TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKKL     G   IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRL 216


>gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 301]
 gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 2457T]
 gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5
           str. 8401]
 gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5
           str. 8401]
 gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017]
 gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a
           str. 2457T]
 gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           4343-70]
 gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-671]
 gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           2747-71]
 gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71]
 gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-218]
 gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           VA-6]
 gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-272]
 gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-227]
 gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-304]
          Length = 222

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 19/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVTTARMAEQSLEDGHYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             N +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   I+  L+ E F V   D G + ++L +  +FD ++LD+ + ++ GF+
Sbjct: 5   RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  KI  PV  L+  +   DK+ GL+ G DDYI+KPF+  EL ARIRA++RR++ 
Sbjct: 65  VLRRIR-EKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A +++  G + ++L+ KT  + G  + LT  E++++ +L     T +++   L  ++
Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G  E   + +D  I  LRKKL +      YI+TV+G GY L
Sbjct: 184 GGYYEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225


>gi|227328970|ref|ZP_03832994.1| DNA-binding heavy metal response regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    + V V   G DG+ L   Y++DA+ILD+ L    G+
Sbjct: 1   MRLLLVEDEEKTSSYIYRALSELGYTVDVAADGIDGLHLAVQYDYDAVILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR+ K  TPV +LS   S++++V+GL+ GADDY+SKPF+  ELVARI+A++RR  
Sbjct: 61  AVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRL 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   D+ ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVTQLHIDDMHLDLLARRVTRAGQRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V + +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKV-DAPYTVKLLHTVRGMGYVL 221


>gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 636

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL++DD ALA  +   L + N+ V +V D GE G      +++D ++LD  L  + G
Sbjct: 1   MRVLLVDDDNALASLLTSQLAAHNYIVDHVAD-GETGWAYASTFDYDLVVLDWMLPQLSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR      P+ +L+  +   +K+ GL++GADDY+ KPF+ +EL+ARIR ++RR+
Sbjct: 60  VHLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +++ G+L ++  +  V   G  + LT KEY ++EL     +   +  + L  L+
Sbjct: 120 PHETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ P    +   + +LR+KLS A    + IETV G GY L+
Sbjct: 180 SSQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222



 Score = 44.7 bits (104), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD      +  +L   NF +      +    L      D ++ D+ +  I GFE
Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + R LR        P+  LS       + +    GADDYI+KP + +    R+
Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRL 622


>gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V V   GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDYAAIILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TVLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A SLI  G++S++     V+ +G  ++L+  EY+++  L+L +   +++     ++Y 
Sbjct: 121 GQASSLIHVGEISIDERQMRVDRRGVPVNLSPLEYRLVSYLALHRGRVVSQHELSENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V I ++RKKL     G   IET  G GY++
Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYIV 216


>gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+       +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSEALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL ++   + YI+TV G GY+++
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKL-HSVDKEEYIQTVRGAGYIMK 224


>gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 219

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E++ V     G       +   +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDTMIGESVLDCLRAEHYAVDWVKDGHAAELALRTDPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV I +   ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS 
Sbjct: 61  TLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     ++++  +    V G  + LT +E+ ++E L  R     ++      LY 
Sbjct: 121 GRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D      ++V+I  LRKKL     G+N I+ V G GYV+
Sbjct: 181 WKDSVSSNAVEVYIHGLRKKL-----GQNLIQNVRGVGYVI 216


>gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system
           with BasS [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 129/229 (56%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD  L   + L ++SE +    V+   E  + L   + +  I+LDLGL D  G
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR 
Sbjct: 60  LHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  G+L +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y
Sbjct: 120 NNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +EP    ++V I  LR+K+     GK+ I TV G GY+L  N   E
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223


>gi|126172825|ref|YP_001048974.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|153002255|ref|YP_001367936.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217974842|ref|YP_002359593.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410933|ref|ZP_07392550.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304896|ref|ZP_07584646.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996030|gb|ABN60105.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151366873|gb|ABS09873.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217499977|gb|ACK48170.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350830|gb|EFM15231.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912298|gb|EFN42722.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      YVTD+ +  +E   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPMLVTELEKQLKLAG---YVTDITDKALEADYLIKETQYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L   R   ISTPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G    +   +  G + ++   +TV+V      LT  E++++++  +     L+K   
Sbjct: 118 RAHGRLNTSSKQLSYGGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|237799166|ref|ZP_04587627.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022021|gb|EGI02078.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 220

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD+A+   I + L +E    Y  D  EDG+        +   L L    +P  
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEG---YTLDWLEDGLSALHALRSEPFDLLLLDLGLPRM 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGFDLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G AQ L+    +S++  ++ V   G  + +T  EYQ++  L +R    +T+E   + 
Sbjct: 118 RSQGRAQPLLEHAGISLDPASQQVSFHGCEVPMTPMEYQLLHQLMIRPGKVVTRERLSDT 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY  +++ E   ++V I  LRKKLS        I TV G GY+L   A
Sbjct: 178 LYGWQEKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLELKA 220


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT]
 gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT]
          Length = 231

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ +NF V     GEDG++         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPIVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR    S  + +L+ +    DK++GL++GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +   +V+G+  VNL++K        ++LT KE+ ++++      T+L+++  L+  
Sbjct: 126 SNNTSSDTLVSGEFKVNLNSKIAYKNDKELNLTPKEFILLKIFMENIGTSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231


>gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2]
 gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    L ++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215


>gi|320322852|gb|EFW78943.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 225

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVERDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|161520888|ref|YP_001584315.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160344938|gb|ABX18023.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 222

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  LA S+   L +  F V     GE    + +  ++  +ILDLGL  + G EV
Sbjct: 1   MLLVEDNPLLAQSLNDALSAARFAVDHMADGEAADHVLRTQDYALVILDLGLPKLDGLEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  +   PV IL+   S+ED+V+GL  GADDY++KPF   EL AR RA++RRS GH
Sbjct: 61  LRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRSLGH 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S +  G L+ +   ++  + G  + LT +E  ++E+L LR    + KE     ++   
Sbjct: 121 EHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIFGLD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      I++++ +LRKKL N+      I T+ G GY+L   A
Sbjct: 181 ESVNADAIEIYVYRLRKKLENSGVA---IVTLRGLGYLLEAKA 220


>gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A  +   L+ ++  + + + G +G+++   +EF++IILD  L  + GF
Sbjct: 1   MRILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R+LR AK+STP+ +L+   +  D VRGL SG DDY++KPF   EL AR+RA+ RR+ 
Sbjct: 61  TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A       DL ++         G  I LT  E+ ++E +    +T L +E  +N ++ 
Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   +D F+ +LR K+    G K  I TV G GY L
Sbjct: 181 YEHTVENNTLDAFMKQLRSKVDEGHGNK-LIHTVRGFGYKL 220


>gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 224

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+S    V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRALRSAGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    S PV IL+   S++++V+GL  GADDY++KPF+ +EL AR+RA++RR 
Sbjct: 61  LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L+ +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219


>gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  +R AK  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDVKLLHTVRGMGYVL 221


>gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 228

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L  E + + V   G DG+ +     +D I+LD  L  I GF
Sbjct: 1   MKLLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR  K  TPV +L+    IED+VRGL++GADDY+ KPF   ELVARI  ++RR+ 
Sbjct: 61  GLLAALRQNK-QTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAA 119

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A +    ++  GDL V+L  +     G RI L+ KE+Q++ LL  RK   L++     
Sbjct: 120 GTAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   +    +IDV + +LR KL +    +  + TV G GYVL +
Sbjct: 180 QVWDVNFDHGTNVIDVAVRRLRSKL-DLPFERPLLHTVRGMGYVLED 225


>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 232

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+    + +   L    + V +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A    PV  L+  SSI D+V+GL+ GADDY++KPF   EL+AR+R ++RR +
Sbjct: 61  NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q+  IV  DL V+   + VE  G RI L+ KEY ++ELL+ R+   L + +  + ++
Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GYVL
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFDAK-LIVTVRGMGYVL 221


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA  +   L+ E F V     GEDG+       FD I+LD+ L  + G+
Sbjct: 1   MRVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +I TP+ +L+      D+      GADDY+ KPF+   LVAR+RA+VRR  
Sbjct: 61  EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDLS++   + V      + LT +E+ ++E L    +T LTK + L +++D
Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I++V+I  LR+K+ +A  G + I+TV G GY L
Sbjct: 181 AHYDGDENIVEVYIGYLRRKI-DAPFGAHTIDTVRGVGYRL 220


>gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +++ L  + +   +   GE  + L +   F  I+LD+ L DI GFE
Sbjct: 3   KILVIEDDVNIAKFVKINL-DKYYETEIVHEGERALYLLERERFSVIVLDIMLPDISGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  K++TPV IL+  S   DK+ GL+ GADDYI+KPFN  ELVAR+RA++RR   
Sbjct: 62  LLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   + +L+   ++ ++L      V+G  + LT +E+Q++++L   +   + +E  + 
Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV I +LR+K+        YI T WG GY
Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGY 224


>gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  ++  LK       +   GE G+ L     +D +I+D  L  + G 
Sbjct: 37  MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+++LR     TPV ILS +  ++D+V+GL++G DDY++KP+   EL+AR+ A+ RR+ 
Sbjct: 97  SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ I  GDL ++  +  V   G  I L  +EY+++E L       +T+ M L H++
Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV + +LR K+      K  + TV G GY +R+
Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNF-DKPLLHTVRGAGYTIRD 259


>gi|222149445|ref|YP_002550402.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736428|gb|ACM37391.1| two component response regulator [Agrobacterium vitis S4]
          Length = 221

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA  +   L   N+ V     GE+  +     ++ A+ILDL L  I G 
Sbjct: 1   MRLLIVEDNHELADWLAKALTQANYTVDAAHDGEEAEDFLNLADYAAVILDLSLPKIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R +    PV IL+  +S++ +V GL SGADDY++KPF   EL AR+RA++RR  
Sbjct: 61  TLLKRIRRSGRKVPVIILTANASLDGRVAGLDSGADDYLAKPFEMAELEARLRALIRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I   DL +N   +   ++G  + LT +E+ ++E L L+  +T+TK      ++ 
Sbjct: 121 DLASPEIAVADLVLNSATRQFSLKGEVLSLTPREHSVLEYLILKAGSTVTKAALSQSVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +   I++++ ++RKKL    GG   I T+ G GY+LR
Sbjct: 181 FDAETDPSAIEIYVHRVRKKLE---GGAVQIATLRGLGYMLR 219


>gi|220933353|ref|YP_002512252.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994663|gb|ACL71265.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+++IED+  L   +   L++E + V  +  GEDG+     Y  D  ++DLGL  +PG 
Sbjct: 1   MRVVVIEDEAPLREQLRTRLEAEGWMVDTSADGEDGLFQLTEYPADVAVVDLGLPRLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR      PV IL+  S  ++KV+GL++GADDY++KPF+ EELVARIRA+ RR+ 
Sbjct: 61  EVIRRLRAGGGKVPVLILTARSQWQEKVQGLEAGADDYLAKPFHMEELVARIRALARRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G L ++  A+ V   G  + LT  EY+++E L+      ++K+   ++LY 
Sbjct: 121 GSADGRLALGPLVLDTAAQAVSRNGEPVSLTTFEYRVLEYLARHAGQVVSKQTLTDYLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ +  +++V I +LRKKL +  G    IET+ GRGY L
Sbjct: 181 HDDDRDSNVLEVLIGRLRKKL-DPDGSLTPIETLRGRGYRL 220


>gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 121/219 (55%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD  +A  +   L    F V   D G DG  +     + A ILDLGL  + G 
Sbjct: 13  IRILLIEDDDEIADRLVAGLARAGFTVERADNGADGYAMGLDDTYAAAILDLGLPQMQGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R +    PV ILS   +  +KV GL +GADDYI+KPF+  E+ AR++A++RR+ 
Sbjct: 73  DVLKRWRASDRKLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRAS 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G +S++  +  V   G  I LT +E +M+     R    +++   ++HLY 
Sbjct: 133 GIASPVLSHGGISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYA 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D  E   I+V+I +LR+KL     G + I TV G GY
Sbjct: 193 LEDSRESNTIEVYISRLRRKL-----GADVITTVRGLGY 226


>gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281500|gb|ABR89910.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 221

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LL+EDD  +   +   L+   F V  +  G D        EFD  ILDLGL  + G 
Sbjct: 1   MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R AK + PV ILS  S   +KV G++SGADDY++KPF   EL+AR RA+VRR+ 
Sbjct: 61  SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +++ G L+++    T  V    + L+  E++    L+ +    ++      HLY 
Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  +   I+  + ++R+K      G + IET  G GY+L
Sbjct: 181 DSEGVDTNAIEALVLRMRRKF-----GADLIETRRGFGYML 216


>gi|317402892|gb|EFV83434.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 229

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +L+  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGATLLKHGRLVFDQTGRVATVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           L +  +E     I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL +
Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++   L+ E F V V   G D +E+      D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A+ + PV +L+   S  DKV GL+ GADDY++KPF+  EL+AR+RA++RR RG
Sbjct: 63  VCRELR-ARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRR-RG 120

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+    S++  G + ++++   V V G  + L  KE++++E+L       LT+   ++ 
Sbjct: 121 DAEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV I +LR K+        YI TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGY 222


>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++++A  ++  L+   F V V   GE+G+ L K   FD +ILDL L  I G +
Sbjct: 4   RILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKIDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RRS  
Sbjct: 64  ICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSAQ 123

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            +++           +I  GD+ +  +   V V    + LT KE+++   L+  K   LT
Sbjct: 124 LSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVLT 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  LN +++     + +I+DV I  LR+K+        YI+TV G GY L E
Sbjct: 184 RDQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEE 236


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  139 bits (349), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L +F E +   +++DL L  + G
Sbjct: 9   ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR 
Sbjct: 66  LEVARRIRKTS-NVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI  + KE++++ELL+       ++      ++
Sbjct: 125 TPAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL   AG +  I TV G GYVLRE+
Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKL-EGAGERRLIHTVRGVGYVLRED 227


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+EL    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L  +I   L  +     V + GED + +     +DAI+LD+ L  I GF
Sbjct: 1   MRVLVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR   +  PV +L+   ++ED+V GL +GADDY++KPF+  EL AR+RA+ RR  
Sbjct: 61  ETCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL+++   + V      I L+ +EY ++E    R    L + + L+  + 
Sbjct: 121 VQRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAW- 179

Query: 181 GRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           GRD E    ++DV++  LR+++    G +  IET+ G GY LR +
Sbjct: 180 GRDYENRSNVVDVYVRYLRERVDRPFGAEA-IETLRGVGYRLRAD 223


>gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 225

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++L L    + V     GE+   L +   +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKKL     G + IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GADRIETVRGLGYRL 216


>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 236

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+    I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVGGTGYVLR 233


>gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 224

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD  LA  +   L    ++V     G    +L +   FD I+LDLGL D+ G 
Sbjct: 1   MNILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  KI  P+ IL+    + D++ G++ GADDY++KPF   EL AR+ A++RR  
Sbjct: 61  ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + IV G L+++     V V G  I+L+ +EY ++E+L ++    ++K+     L  
Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRLAV 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D      +++++ +LRK++         I TV G GY+L E + DE
Sbjct: 181 DGDALTDNAVEIYVHRLRKRIEPYGA---VIRTVRGLGYLL-ERSDDE 224


>gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 130/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 5   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 65  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +IDV I +LR K+ +A   K  I TV G GY L  +A D+ 
Sbjct: 185 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGYTL--DAPDDA 231


>gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 223

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA ++  +L    + V V   GE G++      +D +ILD+ L  + G 
Sbjct: 1   MRLLLVEDERQLAEALSELLIKNRYAVDVVYDGEAGLDYALTGIYDLVILDIMLPRMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR+  IS+PV +L+    +EDKV GL SGADDY+ KPF  EEL+ARIRA+ RR +
Sbjct: 61  EILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +   D ++NL    +E +   + LT KE+ ++     R N  L+K+  +  +
Sbjct: 120 GEMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E +   I+V+I  LRKKL++  G +  I T+ G GY L
Sbjct: 180 WGFDSEADYNNIEVYISFLRKKLAH-IGSQAAISTLRGIGYKL 221


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
 gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
          Length = 232

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+    + +   L    + V +   G DG+ L +  E+  +ILD+ L  + G+
Sbjct: 1   MKLLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A    PV  L+  SSI D+V+GL+ GADDY++KPF   EL+AR+R ++RR +
Sbjct: 61  TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   IV  DL V+   + VE  G RI L+ KEY ++ELL+ R+   L + +  + ++
Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GYVL
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFADK-LIITVRGMGYVL 221


>gi|209695438|ref|YP_002263367.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
 gi|208009390|emb|CAQ79664.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 219

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ L   I   L++ N+   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDQRLGQQIIDALEANNWTPELSQDGIDALYRATSESWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++ PV ILS   ++  ++ GL +GADDY++KPF   EL+AR+R  +RR+ 
Sbjct: 61  TVLKGLRDESVNIPVIILSARDTLTQRIDGLNAGADDYLTKPFELPELIARLRVQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S++  G+LS++  +  +   G  I LT  EY+++      K   +++   + H+Y 
Sbjct: 121 GSASSVLKIGNLSLDTCSSKIVWYGETIELTALEYKVVAYFMHNKEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++R+KLS +      I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKLSPSV-----IKTVRGLGYQL 216


>gi|187930667|ref|YP_001901154.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241664859|ref|YP_002983219.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309780335|ref|ZP_07675086.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187727557|gb|ACD28722.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240866886|gb|ACS64547.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921038|gb|EFP66684.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 226

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LAH +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAHWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPTLSGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  +   PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRRS 
Sbjct: 61  GVLQRLRGRRNPVPVLILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL+ +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PDQSVELQCGDLTYHTGSRTFNLAGQPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             DE   + I+++I +LRKKL ++A     I T+ G GY+LR+ +  ++
Sbjct: 181 MDDEASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRDASAAQS 226


>gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
 gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  +R AK  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDIKLLHTVRGMGYVL 221


>gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli]
 gi|47716815|gb|AAT37590.1| SilR [Escherichia coli]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+ L L +E + V V   G +G+       +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   L AR++A++RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G L ++  A+ V + G  I LT KEY ++E L LR    ++K   L H++D
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  I++V++  LR+KL     G   I TV G GY+L
Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLL 216


>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+++    E+D +I+D  +  + G 
Sbjct: 1   MRLLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPALSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  +R + 
Sbjct: 61  EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +SL V G LS+N     V      + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 121 RVEESLSV-GSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV+I  LR+KL +A  G N I+T+ G GY++RE+
Sbjct: 180 IHFDSDTSVIDVYITFLRRKLESAGCG-NIIQTIRGVGYIVRES 222


>gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 217

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 133/221 (60%), Gaps = 10/221 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKF-YEFDAIILDLGLTDIP 58
            RI ++EDD ++ + ++ +L  E F V V   GE  I EL ++  E+D IILD+ L  + 
Sbjct: 2   FRIAVVEDDISIGNLLKRILSKEGFYVKVYSTGEALINELFEYGKEYDLIILDVMLPGMN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E  R LR  K+  P+ +L+ +S  +DKV GL SGADDY++KPF  +EL+ARIRA++RR
Sbjct: 62  GVETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++  T    +  +   VE++G +I LT KE +++++L   K T ++KE  L  +
Sbjct: 122 K----ETISGTQSKEIVFNGNFVEIEGKKIELTKKEIEVLKILFENKGTPVSKETLLLKV 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ RD  + + IDV I  LR KL       N I+TVWG GY
Sbjct: 178 WESRDVSK-RTIDVHIKHLRDKLGKFG---NRIKTVWGVGY 214


>gi|255656953|ref|ZP_05402362.1| DNA-binding response regulator [Clostridium difficile QCD-23m63]
 gi|296452205|ref|ZP_06893913.1| transcriptional regulator FeuP [Clostridium difficile NAP08]
 gi|296877559|ref|ZP_06901590.1| transcriptional regulator FeuP [Clostridium difficile NAP07]
 gi|296258944|gb|EFH05831.1| transcriptional regulator FeuP [Clostridium difficile NAP08]
 gi|296431410|gb|EFH17226.1| transcriptional regulator FeuP [Clostridium difficile NAP07]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 125/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+K L+++I+  L++  F V + + G DG E     ++DAI+LDL L D  G 
Sbjct: 1   MRVLIIEDNKELSYNIKSGLENAGFVVDIANCGLDGEEKAFVNDYDAILLDLNLPDKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   ++TPV I++    + +  +GL  GADDYI KPF   EL ARI+A++RR  
Sbjct: 61  EILEFFRSNNLNTPVIIVTARDGVNELAKGLDLGADDYIVKPFQIIELRARIQAVIRRFY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I +G +++N  ++ V V    + L  KE+ ++E L+ R    ++      H+YD
Sbjct: 121 GRTNPNIESGPITINPSSRKVYVYNEEVTLGTKEFDIVEYLASRYPDIVSGIDISEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V I +L+KKL   A GK  I T  G GY
Sbjct: 181 EYFDPLSSVLRVHIARLKKKLREVA-GKEIIITTRGIGY 218


>gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
 gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +E  L    F       G D +   + +  D +ILDLGL ++ G E
Sbjct: 14  RVLIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A     + +L+   S EDK+ GL  GADDYI+KPF   ELV R+RA++RR R 
Sbjct: 74  VCRQVR-AFSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRI 132

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G    LI+ GDL ++  A TV V G  + +T  E+ ++  L+LR     ++   +
Sbjct: 133 TVTGPGTDAPLII-GDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELV 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D     + +I+DV I  LR+KL   A G+  I+TV G GY L
Sbjct: 192 TEVWDTTWVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237


>gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N]
 gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N]
          Length = 231

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA  +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQPFDLLILDLGLPQV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR      PV IL+   S+E +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  TGLEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +LI  G L  +   +   V  H + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L +  +E     I+V++ +LRKKL   +G K  I TV G GY L  +    T
Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLERDQGAAT 226


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K +A  ++  L+  ++ V +   G DG+ L     +D I++D+ L  I G 
Sbjct: 1   MKILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TP   L+ + S+ DKV GL  GADDYI KPF+  EL+ARIRA +RR  
Sbjct: 61  EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S + TG+++++   + V     +I LT  E+ ++E         LT+ M   H++D
Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    +IDV I +LR KL      K  I TV   GYVL E
Sbjct: 181 YNYESFSNVIDVHISRLRNKLEKDF-DKGIIHTVRRVGYVLEE 222


>gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    I+D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A +I   L +ENF   +   G  G ++    +FD ++LD+ L  + G++
Sbjct: 3   KILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLPGMKGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LRV K S P+ +L+    IEDKV GL SGADDYI KPF+  EL+ARI A +R S  
Sbjct: 63  VCQQLRVYKPSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSDL 122

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            H ++   ++   DL +NL  K V   G  I LT KE+ ++E   L +   ++K     H
Sbjct: 123 MHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSKMDLAEH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +P   +++V+I  LRKK+      K  I T  G GY+++E
Sbjct: 183 VWHLNFDPGTNVVEVYINYLRKKVDKDFPTK-LIHTRPGMGYIMKE 227


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V VTD G  G EL     +D +ILD  L + PG 
Sbjct: 1   MKILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +ALR    +TPV  L+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL ++ D +    QG  ++L+ KE Q++          LT E     
Sbjct: 121 HLDPTPSTKLKIADLELDRDNQVAYRQGRGVNLSDKEVQLLSYFMENPGQLLTHEQIYQQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+D  ++P   ++   I  LR+K+  A G    I TV+G+GY
Sbjct: 181 LWDQTEQPNSNVVAALIRLLRRKIE-AEGELPLIHTVYGKGY 221


>gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  L  ++ + L + +F+V   + G   +E    +  D ++LDLGL D+ G E
Sbjct: 3   RVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHPPDLVVLDLGLPDLDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LRV   + P+ +LSG     DKV  L +GADDY++KPF+ +EL ARIRA+ RRS G
Sbjct: 63  VIRRLRVWT-AVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRRSTG 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A + +V G   ++L  +T+   +G   HLT  E+Q++E+L       +T+   L  ++
Sbjct: 122 ADASAEVVVGRFRIDLADRTIAADEGEPPHLTRTEWQLLEILLTHPGKLITQRSLLQQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E   I  ++  LR+KL        ++ T  G GY
Sbjct: 182 GPAYEQETHYIRQYMAHLRRKLEADPARPRHLLTEPGMGY 221


>gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
 gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD  L   + L ++SE +    V+   E  + L   + +  I+LDLGL D  G
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR 
Sbjct: 60  LHFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  GDL +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y
Sbjct: 120 NNQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +EP    ++V I  LR+K+     GK+ I TV G GY+L
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYML 216


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G +I L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGY 222


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|222087616|ref|YP_002546153.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725064|gb|ACM28220.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 222

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  +   L+   + V +   GEDG  + K   +  +ILDL L  I G 
Sbjct: 1   MRLLIVEDNRELASWLGKALRQAQYAVDIAHDGEDGEHMLKVASYAVVILDLSLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR      PV IL+  +S++ ++ GL SGADDY++KPF   EL ARIRA VRR  
Sbjct: 61  TLLKRLRQGGNKVPVIILTANASLDGRITGLDSGADDYLAKPFEIAELEARIRAAVRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I  GDL  +   +   + G  + LT +E+ ++E L ++  TT+TK      ++ 
Sbjct: 121 DRAAPEIAVGDLVFDGGTRQFSLGGETLALTPREHAVLEHLVMKVGTTVTKTALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D  +   I++++ ++RKKL  +A     I T+ G GY+LR 
Sbjct: 181 FDDLADTSAIEIYVHRVRKKLEGSA---VQIATLRGLGYLLRH 220


>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
 gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +D++ L       LK++ + V   D G+D     +   +D  ILD+ +    G 
Sbjct: 1   MRILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR A  + PV +L+ + ++ D+V GL +GADDY++KPF  +EL+ARIR ++RRS 
Sbjct: 61  SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL++ L  +TV   G  I L+ KEY ++E L   K   L++    +H++D
Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I+DV++  LR+K+ +    K  I+TV G GY +R+ 
Sbjct: 181 YDFEGGSNIVDVYVRYLRRKIDDPF-EKKLIQTVRGVGYTIRQT 223


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 132/227 (58%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I   L+ E   V     GE+ +E  K  E+D ++LD+ L  + GF+
Sbjct: 4   RILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +++ G L ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN 
Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G D P + + +DV I +LR+K+        Y+ T WG GY  ++
Sbjct: 183 VW-GYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQD 228


>gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 219

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+L++ED+ +LA +++  L ++ F V +     +   L     FD ++ D+ L + P  
Sbjct: 1   MRLLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ +ALR +    P+  L+   ++ D+VRGL+ G DDY+ KPF   ELVAR++A+ RR
Sbjct: 61  GFELAQALRESGFHQPILFLTAREALPDRVRGLEWG-DDYLPKPFALAELVARLKALGRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q L ++  + + L+ + V  QG  + LT KEY ++ELL+L K    T+E  L  +
Sbjct: 120 GEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E +  +IDV++  LRK+L     G++ IETV G GY L E
Sbjct: 180 WGPGFEADSNLIDVYVKNLRKRL-----GEDVIETVRGVGYRLGE 219


>gi|222087224|ref|YP_002545759.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221724672|gb|ACM27828.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 219

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ +  ++   + +    V +V +L  D  E+    ++  I+LDL L D  G
Sbjct: 1   MRILLVEDDETIGSAVRDHIAATTHAVDWVKNLA-DATEVTSAVKYGLILLDLQLPDGVG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L+ LR     TPV IL+    I D++ GL SGADDY+ KPFN  EL ARI A+ RR 
Sbjct: 60  IDFLKKLRRKPDETPVIILTARDQISDRIEGLNSGADDYLVKPFNLGELSARILAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q  I   DL ++   + V + G  + LTG+E+ +++LL  R    ++K+     LY
Sbjct: 120 SGSPQPTIRFADLEIDQPQRRVRLDGKDVVLTGREWAVLDLLVTRPGAIISKDQIEEALY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E E   ++V++ +LRKK+     GK+ I T  G GY L E
Sbjct: 180 AFGSEIESNTVEVYVSRLRKKI-----GKDRIRTARGVGYCLGE 218


>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 279

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ AL+  + + L+ E + V     G   +   + ++ DA++LD+ L D+ G 
Sbjct: 53  VRVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGL 112

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR  
Sbjct: 113 TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 172

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    +SL+  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+
Sbjct: 173 AASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILD 232

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      +  ++++++  LRKK+   AG    I T  G GY+++  
Sbjct: 233 RVWSYDFGGQANVVELYVSYLRKKID--AGRAPMIHTRRGAGYLIKPG 278


>gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ ++  +   L+ + F+ ++T+   DG++  +  + D IILDL L D  G EV
Sbjct: 7   VLIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRELRTL-TSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q L+  G LS++  A+ V      I L+ KE+ ++  L+   N   TK   L+ 
Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      E   I V+I +LR+KL  +     YI TVWG GY
Sbjct: 186 VWGYSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGY 227


>gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 135/231 (58%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ ++  +   L  +   V +   G DG  L   +++D I+LD+ L  + GF
Sbjct: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+   S+ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  SVLRALRKVK-ETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++     G RI LT KE+ ++ +++ R+   L+K      ++D
Sbjct: 120 AQEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    +++V I +LR K+ +A   +  + TV G GYVL   A  ++ +
Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFEQKLLHTVRGMGYVLEPRATADSSD 229


>gi|293365220|ref|ZP_06611937.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|306825415|ref|ZP_07458755.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|307703759|ref|ZP_07640700.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|315612983|ref|ZP_07887894.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|322374486|ref|ZP_08049000.1| DNA-binding response regulator CiaR [Streptococcus sp. C300]
 gi|291316670|gb|EFE57106.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|304432353|gb|EFM35329.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|307622594|gb|EFO01590.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|315315093|gb|EFU63134.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296]
 gi|321279986|gb|EFX57025.1| DNA-binding response regulator CiaR [Streptococcus sp. C300]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD+ VNL    V+V+   + L GKE++++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGDIVVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL   A  +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222


>gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 225

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A+  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALR-ARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR KL      K  + T+ G GYVL
Sbjct: 180 INFDSDTNVVEVAIKRLRAKLDGPHEHK-LLHTIRGMGYVL 219


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|262282356|ref|ZP_06060124.1| transcriptional regulatory protein CiaR [Streptococcus sp.
           2_1_36FAA]
 gi|262261647|gb|EEY80345.1| transcriptional regulatory protein CiaR [Streptococcus sp.
           2_1_36FAA]
          Length = 224

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKDLREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   T  V G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL       N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-MQTLRSVGYILK 221


>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK +   +E  L      V     G       +   +D ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  ELVAR RA+VRRS+
Sbjct: 61  ELLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ-MIELLSLRKNTTLTKEMFLNHLY 179
           G +   I  GDLSV+    T      RI LT +E   ++ELLS  +   L++    + LY
Sbjct: 121 GRSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLS-NQGRPLSRAQLQDSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E E   I+V +  LRKKL     G + I T+ G GYV+
Sbjct: 180 GWNEEIESNAIEVHVSNLRKKL-----GADLIRTIRGVGYVV 216


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYILKEQ 223


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 235

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ AL+  + + L+ E + V     G   +   + ++ DA++LD+ L D+ G 
Sbjct: 9   VRVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR  
Sbjct: 69  TLLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 128

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    +SL+  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+
Sbjct: 129 AASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILD 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      +  ++++++  LRKK+   AG    I T  G GY+++  
Sbjct: 189 RVWSYDFGGQANVVELYVSYLRKKID--AGRAPMIHTRRGAGYLIKPG 234


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  138 bits (348), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 238

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+++IEDD AL   I   +++    V     G+ G+ L   Y  D  ++DLGL  + G 
Sbjct: 3   LRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R  R  K   P+ IL+     +DKV GL++GADDY++KPF+ +ELVAR+RA+ RRS 
Sbjct: 63  DVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARRSL 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G L ++     V +    + LT  EY+++  L  +    L+KE+  ++LY+
Sbjct: 123 QAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEYRLLLTLVRQPGRVLSKEVLADYLYE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ E  +I+V I +LR+KL +  G    IET+ GRGY
Sbjct: 183 HDEDRESNVIEVLIGRLRRKL-DPGGSLGLIETLRGRGY 220


>gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
 gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
          Length = 220

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  L  ++   + ++N +V +VT L      L     +D I+LD+ L D  G
Sbjct: 1   MRILLIEDDTILGAAVRDHVVADNHSVDWVTRLDAANDHLGS-AAYDLILLDMMLPDGQG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              LR LR     TPV I++ +  I D+++GL  GADDY++KPF+  EL+AR+ A+ RR 
Sbjct: 60  ITFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLARLNAVGRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  GDL ++L A+T+   G  ++LT +E+ ++E         L+KE     LY
Sbjct: 120 SGNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSKEQLEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V + ++RKKL +A      +ETV G GY L
Sbjct: 180 AFGAEVESNTIEVHVSRMRKKLGSA-----IVETVRGIGYRL 216


>gi|315222895|ref|ZP_07864775.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|319939034|ref|ZP_08013398.1| transcriptional regulatory protein ciaR [Streptococcus anginosus
           1_2_62CV]
 gi|315188034|gb|EFU21769.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|319812084|gb|EFW08350.1| transcriptional regulatory protein ciaR [Streptococcus anginosus
           1_2_62CV]
          Length = 224

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S+ DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGVTTPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   T  V G+ + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNTTLVDGNEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL       N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-LQTLRSVGYILKD 222


>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 224

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 61  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+IED+K +A  I+L L++E++   VT  G  G  L KF E   D ++LDL L  + G 
Sbjct: 7   VLIIEDEKEIAKFIDLELQAESYETVVTYDGVTG--LSKFRELNPDLVVLDLMLPVLDGL 64

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R  RV K S TP+ IL+   S++DKV GL SGADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 65  EVAR--RVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRV 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL +NLD + V   G RI L+ KE++++EL +        +      ++
Sbjct: 123 NPAVTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVW 182

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                PE      ++DV++  LR+KL +  G +  I TV G GYVLRE
Sbjct: 183 -----PEYTGGSNVVDVYVGYLRRKLEH-DGERRLIHTVRGVGYVLRE 224


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  DVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|119776138|ref|YP_928878.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768638|gb|ABM01209.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   ++  LK   F   VTD   D   L K  ++D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNAMLVKELQKQLKQAGFVTDVTDKVVDADYLIKETQYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   I TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A++ R+ 
Sbjct: 61  TLLEKWRTEGIHTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIHALINRAH 120

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQ-GHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
           G   S    L  +G   V LD     VQ G ++H LT  E++++++  L     L+K   
Sbjct: 121 GRPASPGKQLSYSG---VVLDESQQTVQVGEQVHELTAMEFRLLKIFLLSPKKLLSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 178 TDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ +L   ++ + +++ + V     GE+  +      FD IILD+ +  I G 
Sbjct: 10  MKILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R + I TPV +L+    +EDK++GL  GADDY+ KPF+ +EL+AR+RA+ RRS 
Sbjct: 70  AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S++   DL ++   + V   G  + LT +E+ ++E L   KN  +++     H++ 
Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189

Query: 181 GRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P      +DV I  LR K+ N    +  I+T+ G GY+++++
Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIENFDNNR-IIQTIRGVGYIIKDS 234


>gi|89092005|ref|ZP_01164960.1| Two component Transcriptional regulator, Winged helix family
           protein [Oceanospirillum sp. MED92]
 gi|89083740|gb|EAR62957.1| Two component Transcriptional regulator, Winged helix family
           protein [Oceanospirillum sp. MED92]
          Length = 219

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L   IE+ L+   + V     G   +   +    D IILDL L DI G 
Sbjct: 3   MHVLLVEDDPLLGQVIEIKLQERQYQVDWIQSGSAVLSTVRNLHPDIIILDLNLPDIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   ISTPV IL+   ++E++V GL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 63  EILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRLH 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  I  GD+ ++  A+ V  +G  I  + +E+ ++ LL       +T+      LY 
Sbjct: 123 GRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLY- 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+ E   ++V I  LRKKL     GK  I TV G GY + E
Sbjct: 182 -ADDVESNALEVHIHNLRKKL-----GKELISTVRGVGYYVAE 218


>gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++++LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  I   DL ++L  +     G +I LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LIQTVRGMGYVL 221


>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
 gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
          Length = 224

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L H I   L++E + V     G D +       +DAI+LD  L    GF
Sbjct: 1   MKILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  KI TPV  L+     ED V GL  GADDY+ KPF+ EE++AR+R I++RS 
Sbjct: 61  EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +     DL ++ D K+V   G  I L+ KEY ++E +   KN  L++    ++ + 
Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E  IIDV+I  LRKK+ +    K  I+TV G GY+L E
Sbjct: 181 LDFEDESNIIDVYIRYLRKKIDDDFDVK-LIQTVRGIGYMLTE 222


>gi|331083762|ref|ZP_08332871.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403187|gb|EGG82747.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ ++  +L+  N++V     G+  +E  +   +D +ILD+ +  I G 
Sbjct: 1   MRLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+  S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R   
Sbjct: 61  TVLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++++N  A  +        L  KE+QMIEL+       ++ E F+  ++ 
Sbjct: 121 GQTGSILKMGNVALNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E+ ++ V+I  LRKKL+ A      I+     GY L E
Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALQADIQIKVTRSVGYSLEE 222


>gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+ EDD  +A  +   L++  + V +V D GE  + + +  E D I+LD+GL  + GF
Sbjct: 3   RILIAEDDVQIASFVGKGLRAAGYTVEHVAD-GETALLMGRSPEIDMILLDIGLPAMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   +STPV +L+   S+ D V GL+ GA+DY++KPF   EL+AR+R  +    
Sbjct: 62  SVLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDA 121

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  ++ + TGDL ++L ++ V+V    I LT +E+ ++E+     +  L++E  L H+
Sbjct: 122 PAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   ++DV++  LR K+     G   +ETV G GY LR
Sbjct: 182 WGYDFDPASNVVDVYVRALRTKI-----GAQRLETVRGMGYRLR 220


>gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.]
          Length = 229

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR    + PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++   +L +  +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  E   ++V I  LRKK  +     + I  + G GY++ +
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYS-----DLIRNIRGVGYIIPQ 218


>gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
          Length = 218

 Score =  138 bits (348), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKK  N A     I+ + G GY+L
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKAPNVA-----IKNIRGVGYIL 216


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   +   L +E+++V     GE  ++     E+D +ILD+ +    G 
Sbjct: 1   MRILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R      PV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L V++D   V   G  I L+GKE+ ++  +   K   L++E    HL++
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+  +   K  I TV G GYVL+E 
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDESFKEK-LIHTVRGAGYVLKEK 223


>gi|317056172|ref|YP_004104639.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448441|gb|ADU22005.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L++++  +LK  N++V     G D  +     E+D I+LD+ +  + G 
Sbjct: 1   MRLLLAEDEKELSNALVAVLKHNNYSVDAVYNGLDAYDYIIGAEYDGIVLDIMMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R   I TPV +L+  + +ED++ GL +GADDY++KPF   EL+ARIRA+ RR  
Sbjct: 61  TVLERIREKGIQTPVLLLTAKAQVEDRIAGLDTGADDYLTKPFAMGELLARIRAMTRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + +  G+++++ +   +  +     L  KE+Q++E+L L +N  ++ E  +  ++ 
Sbjct: 121 EFSPNTLKVGNVTLDRERFVISTKNGETKLGNKEFQVLEMLMLNRNILISTERLMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E+ ++ V+I  +RKKLS A G    I+   G GY L
Sbjct: 181 FDAEAEISVVWVYISYIRKKLS-AVGADVEIKASRGVGYTL 220


>gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 221

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +   LK   + +     G D +       +D ++LDLGL    G 
Sbjct: 1   MRLLLVEDNVALADELNRDLKRLGYALDWLADGRDALHQGLIEPYDLVLLDLGLPGTSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R   + TPV IL+      +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  DVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   +  + +G  + LT  E+ ++  L L     L+K    +HLY
Sbjct: 121 GFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQLYDHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +G  E +  +I+V I  LR+KL     GK+ IET  G+GY L
Sbjct: 181 NGEAERDSNVIEVHINHLRRKL-----GKDIIETRRGQGYRL 217


>gi|167839173|ref|ZP_02465950.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           MSMB43]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 135/232 (58%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 ++   Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232


>gi|260587759|ref|ZP_05853672.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
 gi|260542024|gb|EEX22593.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ ++  +L+  N++V     G+  +E  +   +D +ILD+ +  I G 
Sbjct: 1   MRLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+  S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R   
Sbjct: 61  TVLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++++N  A  +        L  KE+QMIEL+       ++ E F+  ++ 
Sbjct: 121 GQTGSILKMGNVTLNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E+ ++ V+I  LRKKL+ A      I+     GY L E
Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALQADIQIKVTRSVGYSLEE 222


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 133/224 (59%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  +EL L+ E + V     G +G+E      FD ++LD+ L  + G E
Sbjct: 3   KILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   PV +++   ++ DKV GL SGADDYI+KPF  EEL+ARIRA +R+   
Sbjct: 63  VLRRLR-RESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S ++T G L+++ +   V V+G  + LT +E+ ++  L   K   +++E  L++++ 
Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E   +DV+I  LR K+  A G K  I TV G GYV+RE 
Sbjct: 182 FDFVGETNAVDVYIRFLRAKIDEAFGIK-LIHTVRGVGYVIREE 224


>gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 229

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +++ L  + +   +   GE  + L +   F  I+LD+ L DI GFE
Sbjct: 3   KILVIEDDVNIAKFVKINL-DKYYETEIVHEGEKTLYLLERERFSVIVLDIMLPDISGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  K++TPV IL+  S   DK+ GL+ GADDYI+KPFN  ELVAR+RA++RR   
Sbjct: 62  LLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   + +L+   ++ ++L      V+G  + LT +E+Q++++L   +   + +E  + 
Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV I +LR+K+        YI T WG GY
Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGY 224


>gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 234

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 13  MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDEDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   +++D+V GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 73  HFLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++  +L++N+  + V + G  I LT KEY ++  L L+  + + +E+  N +Y 
Sbjct: 133 NQGESELIVSNLTLNIGRRQVWMDGQEIILTPKEYALLSRLMLKAGSPVHREILYNDIYS 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 193 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 228


>gi|270292922|ref|ZP_06199133.1| DNA-binding response regulator CiaR [Streptococcus sp. M143]
 gi|306829328|ref|ZP_07462518.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|270278901|gb|EFA24747.1| DNA-binding response regulator CiaR [Streptococcus sp. M143]
 gi|304428414|gb|EFM31504.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD+ VNL    V+V+   + L GKE++++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGDVVVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL   A  +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222


>gi|13476586|ref|NP_108156.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027348|dbj|BAB53617.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 223

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  +   L+  N+ V +   GED        +   +ILDL L  + G 
Sbjct: 1   MRLLLVEDNRELADWLGKTLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV +L+  +S++ +V+GL  GADDY++KPF  EEL ARIRA +RR+ 
Sbjct: 61  EVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL  + + +   + G  + LT +E+ ++E L ++   T++K      +YD
Sbjct: 121 DRTAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I++++ ++RKKL    G +  I T+ G GY+LR
Sbjct: 181 FETDADPSAIEIYVHRVRKKLE---GSRVQIATLRGLGYLLR 219


>gi|292558419|gb|ADE31420.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis GZ1]
          Length = 242

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D GE+GI   +   +D I+LDL L +  GF
Sbjct: 21  IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGIYEAETGVYDLILLDLMLPEKDGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I +   S+EDK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 80  QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++V+L   +  V G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 140 KFNENTLTYGDVTVDLSTNSTTVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL     G+N ++T+   GY+L+
Sbjct: 200 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 240


>gi|164686903|ref|ZP_02210931.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
 gi|164604293|gb|EDQ97758.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  138 bits (347), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ L   +   LK + +N       E+G +L +  E D ++LD+GL D  G ++
Sbjct: 4   ILIIEDDRMLNKGVAFALKKDGYNTMCAYTKEEGKKLIQQNEVDFLLLDIGLPDGSGLDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              ++  KI  P+   +   + ED ++G +SG DDYISKPF+ E L  +I AI++RS  H
Sbjct: 64  CNEIK-EKIDFPIVFFTANDTEEDMIKGFESGCDDYISKPFSIEVLKFKINAILKRSDIH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD-G 181
           ++ L V  DL ++ DAK V  +   I L+  EY+++E+L   K   +TKE+ L+ L+D  
Sbjct: 123 SKKLFVYKDLKIDFDAKRVYKRNEEIRLSATEYKLLEILCKNKGRAMTKEILLDKLWDYN 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +  +   + V I ++RKK+ + +    YI T++G GY   E
Sbjct: 183 GNYVDDNTLSVNIRRIRKKIEDDSKNPEYIITLFGIGYTFGE 224


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYDGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|264680754|ref|YP_003280664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299529368|ref|ZP_07042806.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211270|gb|ACY35368.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298722617|gb|EFI63536.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 15/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A  +   L    + V V     +         FDA++LDLGL D  G 
Sbjct: 1   MRILVVEDNEGIAAGLRTNLMQRGYAVDVCASVAEAWHALSAERFDAVLLDLGLPDGDGS 60

Query: 61  EVLRALRV----------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           EV+R LR+             +TPV IL+    ++D+V GL  GADDY+ KPF+ +EL A
Sbjct: 61  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+RA++RR+ G A  +I   DL V+  A+T+   G ++ ++ +E+ ++  L L +   L+
Sbjct: 121 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     HLY   D  E   ++V++  LRKKL     G+  I T+ G GY + +
Sbjct: 181 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGYFMPQ 228


>gi|331266563|ref|YP_004326193.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5]
 gi|326683235|emb|CBZ00853.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 136/224 (60%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           ++ILL+EDD  L++S+   L  +NF +V     GE+G+   +   +D I+LDL L +  G
Sbjct: 2   IKILLVEDDLGLSNSVFDFL--DNFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS
Sbjct: 60  FQVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GD+ VNL    V+V+   + L GKE++++      +N  L K    + L+
Sbjct: 120 GKFNENTLTYGDVIVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  + +++V++ K+RKKL   A  +N ++T+   GY+L++
Sbjct: 180 GFDSDTTISVVEVYVSKVRKKLKGTAFAEN-LQTLRSVGYILKD 222


>gi|311105062|ref|YP_003977915.1| transcriptional regulator TctD 3 [Achromobacter xylosoxidans A8]
 gi|310759751|gb|ADP15200.1| transcriptional regulatory protein TctD 3 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   ++I  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGATMIKHGRLLFDQTGRVAMVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           L +  +E     I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL +
Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229


>gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR     TPV  L+    IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 61  GILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    + + +L ++L  + V   G RI LT KE+ ++ELL  RK   L + +  + ++D
Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRVKVDDPFEPK-LIHTVRGMGYVL 220


>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+     V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|167579535|ref|ZP_02372409.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia thailandensis TXDOH]
          Length = 232

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL I+DD+ +A SI   L +  + V V   G +G+      ++DA+ LD  L D+ G  +
Sbjct: 12  ILTIDDDELIADSIVQTLGAAGYAVDVARTGREGMAKVMAGDYDAVTLDRKLPDLDGLTI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   + TPV ++S +S ++ +V GL++G DDY++KPF+  EL ARI A++RR   H
Sbjct: 72  LATMRGVGMETPVLVMSALSDVDHRVEGLRAGGDDYLAKPFSLVELSARIDALMRRRPRH 131

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ+++  G L ++L  + V  + H + L   E++++E +       LT+ M    ++ 
Sbjct: 132 AKAQAVLRAGPLELDLIRRKVRHRAHELDLLPTEFRVLEFMMRHAGRVLTRTMIFEAVWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +P   +IDV + +LRKK+ N  G +  I T+ G GY+L
Sbjct: 192 CRFDPGTNLIDVHVGRLRKKV-NVPGEQPMIRTIRGSGYLL 231


>gi|320107596|ref|YP_004183186.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926117|gb|ADV83192.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 243

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD++LA  I        F+++    GE+GI + K + F  IILD+ L  I GF+V
Sbjct: 15  LLLIDDDQSLASLIAEYCAEAGFSIFSALSGEEGIRVAKQHSFQMIILDVMLPGIDGFDV 74

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           L+ LR  + ST PV +L+   +  D+VRGL  GADDY++KPF  EELVARI+ I+RRS  
Sbjct: 75  LQRLR--QFSTVPVLMLTTRGAAMDRVRGLDGGADDYLAKPFQPEELVARIKTILRRSSP 132

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S  V GDL ++  A++V+ +G  + LTG E+ +++LL  +    + +E  +  ++ 
Sbjct: 133 KEMCSKYVVGDLEIDEVARSVKRKGIVLELTGAEFHLLKLLLSQPGEPMPREELIPRIF- 191

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           GR+   + + ID  +  LRKKL   A GK  I+++   GY
Sbjct: 192 GREPGSLDRSIDNLVNNLRKKLGEHAEGKERIKSIRNVGY 231


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
 gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
          Length = 221

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A ++   LK   + V   + G   +       +D I+LDLGL    G 
Sbjct: 1   MRILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR +  +TPV IL+    +  ++ GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  DVLQQLRGSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  L+  G L++N  A  VE+ G    + L+ KE+ ++E L  R  T L++    + +
Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ID  I  LRKK+     GK +I+ + G G+++
Sbjct: 181 YGWGEEVESNAIDYLIHALRKKI-----GKEHIKNIRGVGWMV 218


>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
 gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ LA  I   L    +       G+D +      ++D IILD  L  + G 
Sbjct: 1   MKILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR +  + PV ILS +S ++ +V GL +GADDY++KPF   EL+AR++ ++RR  
Sbjct: 61  TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++  +++ TG + ++L  + V VQG  I    +E++++E L       +++ M L ++
Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +P+  ++DV I +LR+KL +     + I TV G GYV 
Sbjct: 181 WDYHFDPQTNVVDVHISRLRQKLDHGQ-ETSVIRTVRGAGYVF 222


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   I   + ++ DA++LD+ L D+ GF
Sbjct: 21  VRVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGF 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR LR    + PV  L+   ++E++V GL  G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 81  EVLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 140

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++  GDL++N ++  V   G  I LT  E++++  L       L+K   L+
Sbjct: 141 FAVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILD 200

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +++++I  LRKK+   AG +  I T+ G GY+L+
Sbjct: 201 RVWNYDFGGQANVVELYISYLRKKID--AGRQPMIHTLRGAGYLLK 244


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  I   L  E + V +   G DG+++ +    D +ILD  L  I G ++
Sbjct: 5   ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVISGLDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR   +  P+ IL+    I D+V GL +GADDY++KPF+ EEL+AR++A +RR+   
Sbjct: 65  CLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHAQ 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             ++    DL++N  A+ V      I LT KE+ ++E +       LT+E  L  ++   
Sbjct: 125 DLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  II+V+I  LR KL  +A  K  I+TV G GYVLR+ A
Sbjct: 185 FMGDSNIIEVYIRALRVKLE-SANPKRLIQTVRGVGYVLRDYA 226


>gi|37675773|ref|NP_936169.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37200312|dbj|BAC96139.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 218

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L  S+   L    + V   + G       K  +F A+ILDL L DI G 
Sbjct: 1   MRLLLIEDDTLLGQSMVTSLSRHGYTVDWLEKGSGVTSALKTEDFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R A  + PV IL+    I+D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  DVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G+L+++L  +++  Q   + LT  E++++  L       ++K+     L+ 
Sbjct: 121 GSATEVIEVGELNLSLSDQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D      I+V I  LRKK  N       I+ + G GY++
Sbjct: 181 WDDSASDNAIEVHIHNLRKKAPNVP-----IKNIRGVGYII 216


>gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+  A  +   L    F   +   GE   +     +FD +I+D  L  + G 
Sbjct: 1   MRVLIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR    +TPV ILS + +++D+V+GL+SG DDY+ KP++  ELVAR+ A+ R  R
Sbjct: 61  TLVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTR--R 118

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  +  + T   GDL ++  +  V   G  I L  +EY+++E L       +T+ M L +
Sbjct: 119 GPTERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLEN 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +P+  +IDV I +LR K+     GK  +ETV G GY++R+  +
Sbjct: 179 VWDYHFDPQTNVIDVHISRLRSKIDKGQ-GKPLLETVRGAGYMIRDERR 226


>gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
 gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
          Length = 221

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 15/224 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++EDD+ L H +   +++     YV+D   DG E   L     +DA+ILD+GL  +
Sbjct: 1   MRILIVEDDRDLNHQLAETVRNAG---YVSDSAFDGEEAYFLGSTESYDAVILDIGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+   R      P+ IL+      DKV G+ +GADDY+ KPF  EE++AR+RA++R
Sbjct: 58  DGIRVVEKWRQDGHLMPILILTARDRWSDKVLGIDAGADDYVVKPFYLEEVMARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R+ GHA S +  G  +V LD KT  V V G  I LT  E++++  L    +  +++   +
Sbjct: 118 RASGHATSALSCG--AVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDKVVSRTELI 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            HLYD   + +   I+VF+ +LRKKL     G ++IET+ G GY
Sbjct: 176 EHLYDQDFDRDSNTIEVFVRRLRKKL-----GVDFIETIRGMGY 214


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 135/220 (61%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++++ + ++++L+ E + V   + G+D IE+ K    D IILD+ L D  GF+
Sbjct: 3   KILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ + V     P+ +L+  + I DKV GL+ GADDY++KPF+  EL+AR++A++RR   
Sbjct: 63  ILKKI-VPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    GDL VN D   V+ +G  I+LT KE+ ++++L   K   LT+E  L+ ++
Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +++D+ I +LRKK+ +      YI TV+G GY
Sbjct: 182 GYDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGY 221


>gi|330821031|ref|YP_004349893.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373026|gb|AEA64381.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 219

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD  +   +E+ L+   + V   D   DGI          +  ++LDLGL   
Sbjct: 1   MRLLLVEDDDLIGSGLEISLRQAGYEV---DWLRDGIAAQAALATAGYALVVLDLGLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +LR LR    + PV +++   ++ D+VRGL  GADDY++KPF+  E++AR RA+VR
Sbjct: 58  SGSALLRMLRARGDTIPVLVITARGTVADRVRGLDEGADDYLAKPFDLSEVLARCRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G  +   V GD++++L ++ +     RI LT +E+ ++  L  ++    ++    + 
Sbjct: 118 RSQGRTRDAFVRGDIAIDLTSRVITRNASRIALTAREWAILIQLVGQRGVPQSRARLEDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  +D  E   I+V +  LRKKL     G ++I TV G GYV+
Sbjct: 178 LYGWQDGVESNAIEVHVSNLRKKL-----GADFIRTVRGIGYVV 216


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 135/234 (57%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++   ++  L+   F V     G+  ++      FD I+LDL L ++ G EV
Sbjct: 5   ILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RR++  
Sbjct: 65  CKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTKAA 124

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +S         IV GD+ +  D   V ++G+++ LT KE++++  L+  K   +T++  
Sbjct: 125 KRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LN +++     + +I+DV I  LR+K+        YI+T+ G GY L    KDE
Sbjct: 185 LNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEVPLKDE 238


>gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 2   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 222


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+ L L +E + V +   G +G+       +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   L AR++A++RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G L ++  A+ V + G  I LT KEY ++E L LR    ++K   L H++D
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  I++V++  LR+KL     G   I TV G GY+L
Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLL 216


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L +F E +   ++LDL L  + G
Sbjct: 9   ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR 
Sbjct: 66  IEVARRIRKTS-NVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++
Sbjct: 125 TPAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL    G +  I TV G GYVLRE+
Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKL-EGIGERRLIHTVRGVGYVLRED 227


>gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 228

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   L +  F V     G+DG+ +  F E D I++D+ L  + G 
Sbjct: 1   MRLLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    +TPV +LS    ++D+VRGL++GADDY++KPF   EL+ARI+A++RR+ 
Sbjct: 61  SLIKTLRARGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAG 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G      ++ G+L ++L  + V   G  + L   E+ ++E L   +   ++K M + H++
Sbjct: 121 GVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P   +++  +C+LR K+      K  I TV G GYVL
Sbjct: 181 NYNFDPMTNVVEARVCRLRDKIDKGFHPK-LIHTVRGAGYVL 221


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   ++  L  E++       G D ++     ++D IILD+ L  + G 
Sbjct: 1   MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R     TPV  L+    IED+V+GL  GADDY+ KPF+ EEL+AR+R ++RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++ ++K V     +I L+ KE+ ++E +   +N  L++E    H ++
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    ++DV+I  LRKK+    G K  I TV G GYVLR+
Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRK 222


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+A+   +   L  E F+V   + GE+ ++ C    FD +ILD+ +  + G EV
Sbjct: 7   ILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ +R  + + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+   
Sbjct: 67  LKVIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H Q ++V G L +++   ++   G  + LT KE+ +++L    +N   TKE    
Sbjct: 126 AGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIYQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +  II+V I +LR+K+ +      YI+T+WG GY
Sbjct: 186 LIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGY 228


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           CFT073]
 gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89]
 gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC
           O1]
 gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88]
 gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a]
 gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
 gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli
           CFT073]
 gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli]
 gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli]
 gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli]
 gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli]
 gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli]
 gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli]
 gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli]
 gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli]
 gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli]
 gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli]
 gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli]
 gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli]
 gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli]
 gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli
           UTI89]
 gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory
           system with BasS [Escherichia coli APEC O1]
 gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O127:H6 str. E2348/69]
 gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli S88]
 gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli ED1a]
 gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           LF82]
 gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034]
 gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972]
 gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146]
 gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           WV_060327]
 gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           RN587/1]
 gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
          Length = 222

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S +  G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 220

 Score =  138 bits (347), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   + G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEETFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   +  PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+ A++RR  
Sbjct: 61  SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +L+    +S+++D + V   +G  I LT  EY+++  L       ++K      +Y
Sbjct: 121 GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V+I +LR++L     GK+YIET  G+GY L++
Sbjct: 181 EEEQIKDSNVIEVYINRLRQRL-----GKDYIETRRGQGYRLKD 219


>gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 225

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 132/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  + G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFSVK-LIHTVRGVGYVL 219


>gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD+ L   +   L +E F V V   GE G+     + +D ++LD+ L  + G+
Sbjct: 1   MRVLLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A + TP+ +L+      D+  GL +GADDY++KPF+   LVAR+RA+ RR  
Sbjct: 61  RVCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL V+   +    +G  I LT KE+ ++E L+ RK   +TK+  L  ++D
Sbjct: 121 AGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  +++V++  LR+K+ +   G   I TV G GY L E+
Sbjct: 181 SAREADHNLVEVYVSALRRKI-DLPFGTFTITTVRGVGYRLEES 223


>gi|330809736|ref|YP_004354198.1| two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377844|gb|AEA69194.1| Putative two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 234

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 134/229 (58%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  +  +   L    + V V   G DG+     +++D +ILD+ L    G+
Sbjct: 1   MRLLIVEDEEKTSSYVHRGLTELGYIVDVATNGIDGLHYALEWDYDVVILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+ K  TPV +LS   +++D++RGL+ GADDY+ KPF+  ELVAR++A++RR  
Sbjct: 61  DVLQGLRLQK-KTPVIMLSARGTVDDRIRGLREGADDYLGKPFSFAELVARVQALIRRRA 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    L  +   DL V+L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 GDTVDLTHLRIDDLEVDLQARKVTRGGLRLDLTAKEFSLLSLLARHQGEILSKLMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   + +  +++V I ++R K+ +A   +  + TV G GYVL     D
Sbjct: 180 WDMNFDSDANVVEVAIKRVRAKV-DAPYPRKLLHTVRGMGYVLESREVD 227


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 223


>gi|116490257|ref|YP_809801.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586509|ref|ZP_01543953.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889640|ref|ZP_06552729.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
 gi|116090982|gb|ABJ56136.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433073|gb|EAV39795.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480637|gb|EFD89272.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429]
          Length = 231

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 135/228 (59%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDDK L   I  ML SE   V     G DG        +D I+ DL L ++ G 
Sbjct: 6   VKILLIEDDKILNDDITAML-SEIAEVKQVFNGADGEYEAVEAPYDLIVSDLMLPEMNGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R A I TPV IL+   S++DKV+G + GADDY++KPF++EEL+AR+ A++RR+ 
Sbjct: 65  DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I  G+L ++L  +TV V    + L GKEY ++  L+  KN  +TK+   + ++
Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +    ++++++  LR+KL  + G  + I+T+   G++L  + ++
Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLE-SVGKNDLIKTLRNVGFILESDEQN 231


>gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK +   I+  L    F+V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRVLLIEDDKLIGDGIKAGLIKMGFSVDWFTEGKQGLNALDSAPYDAVVLDLSLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G +S++    TV  +G  I+L  KE+ ++ELL   +   L + +    +Y+
Sbjct: 121 GQVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I+V I  LRKK      G ++I TV G GY L E
Sbjct: 181 WDDDVSSNAIEVHIHHLRKKF-----GSSFIRTVHGIGYTLGE 218


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232


>gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli]
          Length = 222

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G G++L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIPTVRGFGFMLVANEEN 222


>gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 223

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           MR+LL+EDD+ L   +   L  + F V   D G D  E   F E ++A+ILDLGL    G
Sbjct: 1   MRVLLVEDDRELQKRLHRELTQQGFVVDTADNGVDA-EFLGFEEPYEAVILDLGLPQRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR  R      PV IL+   +  +KV G + GADDY+SKPF+ EEL+AR++A++RRS
Sbjct: 60  LDVLRHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRRS 119

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    QS + +  L+++ + + V   GH I LTG E++++    L     L+K      +
Sbjct: 120 QNRPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y    + +  +++V++ +LRKK+     G + I+T  G+GY+  E 
Sbjct: 180 YALDADKDSNVMEVYVNRLRKKV-----GSDLIKTRRGQGYIFGET 220


>gi|126463915|ref|YP_001045028.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221369515|ref|YP_002520611.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|332561170|ref|ZP_08415488.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides WS8N]
 gi|126105726|gb|ABN78256.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221162567|gb|ACM03538.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|332274968|gb|EGJ20284.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides WS8N]
          Length = 220

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  +A  + + L S  F V     GE    L     +D I+LDLGL  + G 
Sbjct: 1   MRALVVEDDARIAQDLSVALGSAGFRVETAADGETAWFLGGTESYDLIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   +  PV +L+   +  ++V G+ +GADDY+ KPF  EELVAR RA+VRRS 
Sbjct: 61  AVLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L   G L+++++  T  + G  + L   E++++  L L ++  +     L HLY 
Sbjct: 121 GRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   ++  + +LR+K+     G+  I T  G GY L
Sbjct: 181 DNDAREANALEAVVARLRRKV-----GRGVIGTRRGFGYQL 216


>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
          Length = 226

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++   I   LK  NF V     G + + L KF + D ++LD+ L D+ GF+
Sbjct: 4   RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +     S  V +L+      DKVRGL+ GADDYI KPF+  ELVARI+AI+RR+  
Sbjct: 64  VCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAGK 123

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S+ I  G   V+++A+++      +  T +E+ ++++     N   T++  LN ++ 
Sbjct: 124 QNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV I ++R+K+ +      YIET+WGRGY+ R+
Sbjct: 184 EDFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGYLWRK 226


>gi|146341965|ref|YP_001207013.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146194771|emb|CAL78796.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 221

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 132/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  +   L++  + V  +  GE    L    ++ A++LDLGL  + G 
Sbjct: 1   MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+  +S  ++V G+ +GADDY+ KPF  EEL+AR+RAIVRRS 
Sbjct: 61  SVLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL-NHLY 179
           GHA  ++ +GDL+++     V + G  + L+  EY++I  L LR N  +  +  L  ++Y
Sbjct: 121 GHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYL-LRHNGRVVPQHELEENVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + +   ++V I ++RKKL     G + IET  G GY++ E A+
Sbjct: 180 GLGHDHDSNALEVLIRRVRKKL-----GADIIETRRGFGYMIPETAE 221


>gi|221065616|ref|ZP_03541721.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710639|gb|EED66007.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 231

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 11  ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70
            L HS    L   N+ V     G    E CK   ++ +ILDLGL D  G  VLR LR   
Sbjct: 15  GLVHS----LAQSNYAVDAVHTGHAATEACKTTAYELLILDLGLPDEDGLSVLRRLRRQG 70

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVT- 129
           ++ PV IL+    ++D++ GL +G DDY+ KPF   EL ARIRA++RR      SL +  
Sbjct: 71  VAAPVIILTARYDLQDRISGLDAGGDDYLPKPFALGELEARIRALLRRGSSSGASLTLGF 130

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           GDL ++  A+   V  H + LT +E  ++ELL  R+   ++K+  +  LY    +     
Sbjct: 131 GDLMLDPAARIATVHDHELMLTAREMAVLELLLRRQGRIISKQQIIESLYTWASDINPSS 190

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           I+VF+ +LR+KL +A  G   I  + G GY L +  + +T E
Sbjct: 191 IEVFVSRLRRKLEDAGAGVG-IRMLRGLGYRLEQQPRPQTHE 231


>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 226

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A++  +   L  E +NV V   G+  I+       D ++LDLGL D+ G EV
Sbjct: 4   VLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAG--AADLVVLDLGLPDMDGLEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G 
Sbjct: 62  ARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGD 121

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   D+ V++ A      G  +HLT KE++++ +L  +  + + +++ +  ++ 
Sbjct: 122 PTESEEITAQDVKVDVAAHRAFQDGRELHLTTKEFELLRVLVSQAGSVVGRDILMREVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  K +D+ +  LR+KL++ A    YI TV G G+
Sbjct: 182 SEPIGSTKTLDMHVSWLRRKLNDDANNPRYITTVRGLGF 220


>gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 228

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   +E+ L++  F V     G+          +  +ILDLGL  + G 
Sbjct: 10  MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L++LR+     PV +L+   +  DKVRGL +GADDY+ KPF+  EL++R RA++RRS+
Sbjct: 70  DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    LI    LSV+  A+TV   G R+ LT +E+ ++  L         +      LY 
Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+V +  LRKKL     G + I TV G GYV+
Sbjct: 190 WHEEVESNAIEVHVSNLRKKL-----GGDVIRTVRGFGYVV 225


>gi|110832893|ref|YP_691751.1| transcriptional regulator QseB [Alcanivorax borkumensis SK2]
 gi|110646004|emb|CAL15480.1| transcriptional regulatory protein qseb [Alcanivorax borkumensis
           SK2]
          Length = 220

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD  L   I+  L++  F V    L  DG+   K  +FDA++LDLGL D  G 
Sbjct: 1   MHILLIEDDALLGDGIQAGLQAMGFTVAWVTLARDGLAAWKSVDFDALVLDLGLPDQEGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L   R A ++ PV IL+   +++D++ GLQ GADDY+ KPF+  EL AR++A++RR+R
Sbjct: 61  EALCQWREAGLTVPVLILTARDAVQDRIDGLQRGADDYLIKPFDLGELAARLQALLRRTR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+  I  G L V+   + V +    + L  +E  ++  L   +   LT +   + +Y 
Sbjct: 121 GQARPFIEHGRLRVDPFRQQVWLADKEVELQRREMALLLALLQSQGRLLTADQLADRVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   + V I  LR+KL +       +ETV G GY L
Sbjct: 181 WMDGVESNALTVHIHNLRRKLDS-----RIVETVRGGGYRL 216


>gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 221

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  S+  +L++E + V +V D GE          +D ++LDLGL    G
Sbjct: 1   MRLLLVEDDLMIGESVLDLLRAEGYAVDWVKD-GEMADTALDSQTYDLVLLDLGLPRRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR  K  TPV + +   +I  +V GL  GADDYI KP+  +EL+ARIRA++RR+
Sbjct: 60  LAVLRRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +     +S+N   + V + G  + L+ +E+ ++ELL  R    L++      LY
Sbjct: 120 AGRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +D+     ++V+I  LRKKL     G   I+ V G GY++ ++A 
Sbjct: 180 SWKDDLSSNAVEVYIHGLRKKL-----GPRIIQNVRGVGYMIPQSAP 221


>gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD   A  +   L+   F V +   G+DG+ L     ++ ++LD+ L    G+
Sbjct: 1   MKVLIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A   TPV  L+   ++ D+VRGL+ GADDY+ KPF   E +AR+R+++RR  
Sbjct: 61  SVLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V+         G ++ LT KE+ +I L++ R    L++ +    ++D
Sbjct: 121 DRRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E  ++DV + +LR KL +    K  I TV G GYVL E  
Sbjct: 181 MNFDSESNVVDVHVRRLRAKLDDPYPTK-LIHTVRGVGYVLEERG 224


>gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae]
 gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae]
 gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 226

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYIL 221


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGY 222


>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
 gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
          Length = 219

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 122/219 (55%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD +LA ++   L+ +N+ V     G + + + +  + D  ILDLGL D+ G 
Sbjct: 1   MHILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R ++    + IL+  S  E+K+ GL SGADDY++KPF  +EL+AR+R + RR  
Sbjct: 61  EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD+ ++     V + G  + L+ +EY ++  L        T+ +  N LY 
Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E     ++V I  LRKKL     G ++I+TV G GY
Sbjct: 181 WGEEVSSNALEVHIHNLRKKL-----GSDFIKTVRGVGY 214


>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 242

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L ++D+ +L   + + ++ E +       G D +   +    DAI+LD+ L D  G 
Sbjct: 18  IRVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  +   PV  L+   ++ D++ GL +G DDY++KPF+ EEL+AR+R+++RRS 
Sbjct: 78  EVMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSG 137

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S ++ GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 138 ATSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+   AG +  I T+ G GYVL+
Sbjct: 198 VWNYDFGGQANVVELYISYLRKKID--AGREPMIHTMRGAGYVLK 240


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 134/232 (57%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQSK-ATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRD 232


>gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
          Length = 230

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL ED+K L++++  +LK+ N+ V     G D  +     ++D IILD+ +    G 
Sbjct: 1   MKLLLAEDEKELSNALVAVLKANNYIVDAVYDGADAYDWAVTDDYDGIILDIMMPKRNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR   I TPV +L+  S +ED+V GL +GADDY++KPF  +EL+ARIR + RR+ 
Sbjct: 61  DVLAQLRKDGIKTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A   +    + +N     +E  G  + L  KEYQM+E+L   K   ++ E F+ H++ 
Sbjct: 121 SYAPDTLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  V ++ V I  LR+KL+        I+ V G GY L
Sbjct: 181 YETDINVNVVWVNISNLRRKLTQINAPVE-IKAVRGLGYRL 220


>gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 225

 Score =  137 bits (346), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 131/230 (56%), Gaps = 12/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD   A ++E ++K    +  N+     G  G+ L    ++D IILD  L  +
Sbjct: 1   MKILMVEDD---ATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             RG +Q ++     G LS+ L  + V + G  I L  KE+Q+++ L   +N  +++ + 
Sbjct: 118 --RGESQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224


>gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ K F  EEL AR+ A +RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 136/221 (61%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +   ++  L+  NF+ +  + G  GI++ K   FD ++LD+ L D+ G+ 
Sbjct: 3   KVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSGWN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R +    PV +++  S   D++ G + GADDY+ KPF+  E+VARI+AI+ RS+ 
Sbjct: 63  VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKW 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +LI    ++++ D++ V+V G +I LT KE+ ++ LL+      L++E  LN ++ 
Sbjct: 122 AESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +++ +D  I +LR+KL +    ++ I+TVWG GY L
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK---RDIIKTVWGYGYKL 219


>gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 218

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGAGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKK  N A     I+ + G GY+L
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKAPNVA-----IKNIRGVGYIL 216


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  SI   L+   + V + + G++  E+C   ++D +ILD+ L  + GF
Sbjct: 1   MKLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R    +  + +L+  S +ED+V GL  GA+DY+ KPF+ EEL ARIR+++RR  
Sbjct: 61  SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++IV G +  + +++TV++      LT KE  ++E L L K+  +++E  L+H++ 
Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     + V +  LR+KL + AG  N I+ V G GY++ E
Sbjct: 181 DSVDFLSNTVRVHMSTLRRKLKDKAGC-NIIKNVIGEGYIIDE 222


>gi|313890176|ref|ZP_07823811.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313121537|gb|EFR44641.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I TPV I++    ++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ I  G+L V+LD   V+V G  + L GKEY ++  L   +N  L K    + ++ 
Sbjct: 121 KFNENSITFGNLRVDLDRNAVKVNGSAVELLGKEYDLLIYLLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V++ K+RKKL +     N ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKDTDFATN-LQTLRSVGYILKAN 223


>gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +A  I   L +  F V     G  G+E     E D +++D  L  + G  V
Sbjct: 22  VLLVEDDGTIAEEIAAELTARGFKVLHEATGNAGLEAALRLEADIMVVDRLLPGLDGLSV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   I  PV +LS +S+++D+V GL++G DDY++KPF  EELVARI A++RR    
Sbjct: 82  IETMRQQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + ++L  + V   G  I L  +E++++E L  R    LT+ M L  ++  R
Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P   ++DV I KLR+K+ +  G +  IE++ G G+ LR
Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  + L L+ E + V V + G DG++  +   FD ++LD+ L ++ G E
Sbjct: 5   KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    +TP+ +++   S+ DKV GL  GA+DYI+KPF+ EEL+ARIRA +R +  
Sbjct: 65  VLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIN 124

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   + +   DL+VN   + ++  G  + LT +EY ++  L   +   LT++  L  +
Sbjct: 125 EQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+ +    K  I TV G GYV++
Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227


>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 227

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+++    E+D II+D  +  I G 
Sbjct: 1   MRLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+  L+   ++ED + GL +GA+DYI KPF  EEL+ARIR  +R   
Sbjct: 61  EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  SL   G L++N     V      + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 121 RNDDSL-NAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDV+I  LR+KL  AAG  N I+T+ G GY++RE
Sbjct: 180 IHFDSDTSVIDVYITFLRRKLE-AAGCGNIIQTIRGVGYIVRE 221


>gi|312113420|ref|YP_004011016.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218549|gb|ADP69917.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 221

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +A  +E  L++  + V     GED        ++ A+ILDLGL  + G 
Sbjct: 1   MRVLLVEDDRRIADDVERALQASGYVVETAGEGEDAWFRGDTEDYAAVILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+   S  ++V G+ +GADDY+ KPF+ EEL++R+RAI+RRS 
Sbjct: 61  SVLKRWRAADRRMPVLILTARGSWAERVDGIDAGADDYLPKPFHMEELLSRLRAIIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A SL+  GD++V+     V V+G  + L+  EY+++  L L +   + +      +Y 
Sbjct: 121 GAASSLVSIGDVTVDDRQMRVSVRGVPVALSALEYRVVAYLVLHRGRVVPQHELEEAVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++ +   ++V + ++R+KL     G   I T  G GY++ E
Sbjct: 181 HDEDHDSNALEVLMGRVRRKL-----GVPVIGTRRGFGYIVEE 218


>gi|264680915|ref|YP_003280825.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299530906|ref|ZP_07044320.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211431|gb|ACY35529.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298721127|gb|EFI62070.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 225

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+S    V +V +  E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKVHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   SIE++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +E     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCLEKIA 223


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ LA+ I+  L  E + + V   GE+     K+  +D IILD+ L    G 
Sbjct: 1   MKILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R   I+TP+ +L+   S+ D+V+GL SGADDY+ KPF+ +EL AR+R+++RR  
Sbjct: 61  TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++N   + V +   ++ LT KEY ++E         +T+ +    ++D
Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +IDV+I +LRKK+ +  G    +ETV G GY L
Sbjct: 181 IDFEGNSNVIDVYIRRLRKKIGDKEG--KILETVRGAGYRL 219


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 127/219 (57%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +A  + L L+   F V     G + +E+ K    D ++LDL L  I G+EV
Sbjct: 10  VLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    PV +L+    ++DK++G + GADDY+ KPF+ +EL+AR++A++RR+   
Sbjct: 70  CRQIR-SNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL+++L++  VEV G ++ LT +E +++  L+       T+E  L  ++   
Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWGFE 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +DV + +LR+KL +      +I+TVWG GY L
Sbjct: 189 FPGNTRTVDVHVNRLREKL-DGLPKSWHIKTVWGVGYKL 226


>gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 220

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   +   L    + V   + G DG  L +   F+A+ILDLGL   PG 
Sbjct: 1   MRLLLIEDDTDLVARLIPALNKAGYTVEHANNGIDGAFLGEEEAFEAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   +  PV IL+   +  ++V GL++GADDY+ KPF+ EEL+AR+ A++RR  
Sbjct: 61  SVLSQWRQKGLLMPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +L+    +S+++D + V   +G  I LT  EY+++  L       ++K      +Y
Sbjct: 121 GRADNLLQHAGVSLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +  +I+V++ +LR++L     GK+YIET  G+GY L++
Sbjct: 181 EEEQIKDSNVIEVYVNRLRQRL-----GKDYIETRRGQGYRLKD 219


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           +L++ED+K +A  IEL L++E    Y T++  DGI  L KF E     +ILDL L  + G
Sbjct: 6   VLIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ IL+   ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 63  LEVARRIRKTS-NVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++
Sbjct: 122 TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 182 PGY-QGGSNVVDVYIGYLRKKL-EAGGERRLIHTVRGVGYVLRED 224


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score =  137 bits (346), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 127/219 (57%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L S  + V V++ G DG+ + +  EFD +ILD+ L  I G+
Sbjct: 1   MRILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +R  R  +   PV  L+   S+ED+V+GL+ GADDY+ KPF+  EL+AR+R ++RR+ 
Sbjct: 61  SFIRRFR-ERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q +    DL V++  +     G RI LT KE+ +++LL   K   +++    + ++D
Sbjct: 120 MRQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV I +LR K+ +    K  I+TV G GY
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKIDDGFAVK-LIQTVRGMGY 217


>gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2]
 gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2]
          Length = 222

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K S PV IL+   +++D+V GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++  +L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y 
Sbjct: 121 NQGESELIVSNLTLNIGRRQVWMDGQEVILTPKEYALLSRLMLKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|319796546|ref|YP_004158186.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315599009|gb|ADU40075.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 224

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA ++   L++    V +V +  +    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPSLHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ LR      PV +L+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + I  G L  +   +   + G  I L+ +E  ++E+L  R    ++K+  ++ L 
Sbjct: 121 MGATSNAIRHGPLVYDQAGRVATIDGKMIELSARELGLLEVLLQRAGRLVSKDQLVDRLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E  +  I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSLNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219


>gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 221


>gi|304313008|ref|YP_003812606.1| Two-component response regulator receiver [gamma proteobacterium
           HdN1]
 gi|301798741|emb|CBL46974.1| Two-component response regulator receiver [gamma proteobacterium
           HdN1]
          Length = 220

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ L + +  +L+   + V   D G DG  L    +FD IILDLGL   PG 
Sbjct: 1   MKLLLVEDDETLVNELRPILQRAGYAVEHADNGIDGAFLGNEEDFDLIILDLGLPKKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R  + + PV IL+   +  ++V GL++GADDY+ KPF+  EL+AR+ AI RR  
Sbjct: 61  EVLQEWRKRQRNMPVLILTARDAWHERVDGLKAGADDYLGKPFHNAELLARLEAIARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A + +    +++++D +  +   H  I LT  E++++  L L      +K     H+Y
Sbjct: 121 GKADNSLHWNGVTLDIDQQCAQQAPHSPIQLTAIEFRLLRYLMLNPLHFHSKTRLSEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  +I+V+I +LR+       GK++IET  G+GY LR
Sbjct: 181 EEDQIKDSNVIEVYINRLRQYF-----GKDFIETRRGQGYRLR 218


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 134/225 (59%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           MRILLIEDD ++A  I   L+   ++V     GE G+ L  K  E+D +++D  L ++ G
Sbjct: 1   MRILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ LR A   +PV ILS +  ++D+V+GL++G DDY+ KPF   EL+ARI A++RR 
Sbjct: 61  LTIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQ 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +++ +   DL ++L A  V   G   +L  +EY+++E L       +T+ M L ++
Sbjct: 121 KSSTSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +P+  +IDV I +LR+K+      +  + TV G GY+LR+
Sbjct: 181 WEYHFDPQTNVIDVHISRLRQKIDKDF-DQQLLSTVRGAGYMLRD 224


>gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L+  ++L L    + V     GE+   L +   +DA++LDLGL  + G 
Sbjct: 1   MRILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   I+TPV IL+   S  +KV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKKL     G   IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRL 216


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +D I+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   +E  L+   F V +  D  + G+ L     +  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTSYALVVLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL AR RA++RR+
Sbjct: 60  MDLLKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  +I  GDL+VN  A+T +V G R+ LT +E+ ++  L   +    ++      LY
Sbjct: 120 QGRSVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + E E   I+V I  LR+KL     G   I TV   GYV+
Sbjct: 180 GWQQEIESNAIEVHISNLRRKL-----GARLIRTVRNIGYVV 216


>gi|332366461|gb|EGJ44209.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 224

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFERGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
          Length = 218

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  +  S+   L++E   + +V D G   +       +  +ILDLGL    G
Sbjct: 1   MRILLVEDDDMIGESVMAGLETEGHAIDWVRD-GNSALLALNTTPYSLVILDLGLPGKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+ +R  +  TPV + +   +++D+++GL SGADDY+ KP++ +EL ARIRA++RRS
Sbjct: 60  LQVLKEMRGRRDPTPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  +I  G+L ++   + V  +G  + L+ KEY ++  L+ RK    ++      LY
Sbjct: 120 AGRADPVIERGELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +      I+V I  LRKKL+++A     I+TV G GY+L
Sbjct: 180 NWDNTVGSNAIEVHIHHLRKKLADSA-----IKTVRGVGYML 216


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MRVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|33598501|ref|NP_886144.1| two-component response regulator [Bordetella parapertussis 12822]
 gi|33603445|ref|NP_891005.1| two-component response regulator [Bordetella bronchiseptica RB50]
 gi|33574630|emb|CAE39281.1| two-component response regulator [Bordetella parapertussis]
 gi|33577569|emb|CAE34834.1| two-component response regulator [Bordetella bronchiseptica RB50]
          Length = 225

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/221 (38%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  +   L  ++  V V   G +G  L    +++ +ILD+ L DI GF
Sbjct: 1   MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A  +TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+AR+ A+ RR R
Sbjct: 61  AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV I +LR KL +    K  + TV G GYVL
Sbjct: 181 MNFDSDTNVIDVAIRRLRGKLDDPYDAK-LLHTVRGMGYVL 220


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +D I+LD+ + ++ GF
Sbjct: 10  MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 232


>gi|260575288|ref|ZP_05843288.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259022548|gb|EEW25844.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 219

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L  ++   + +E       +   D     +   +D I+LDL L D  G 
Sbjct: 1   MRILLVEDDRGLGSAVRDQIAAEGHTPDWVETLADATACTQTISYDLILLDLMLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR LR    +TPV IL+    I D++ GL +GADDY+ KPF+  EL ARI A+ RR  
Sbjct: 61  DFLRGLRKRGAATPVIILTARDRITDRIDGLNAGADDYLVKPFDLAELSARIGAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+    +   DL+++L A+++      I L+ +E+ + E+L  R  T + K      LY 
Sbjct: 121 GNPNPQVHLADLTIDLAARSITSPEGPIDLSQREWIIFEVLLQRPGTIVPKGQIEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V++ +LRKKL     G++ IETV G GY L
Sbjct: 181 FDAEVESNTIEVYVSRLRKKL-----GRDVIETVRGMGYRL 216


>gi|322376362|ref|ZP_08050855.1| DNA-binding response regulator CiaR [Streptococcus sp. M334]
 gi|321282169|gb|EFX59176.1| DNA-binding response regulator CiaR [Streptococcus sp. M334]
          Length = 224

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+ + + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDNPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222


>gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 225

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 132/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  + G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFPVK-LIHTVRGVGYVL 219


>gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ LA  IE  L+ E+  V V   G+ G+++     +D  ++D  L +  G 
Sbjct: 1   MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + RA+R AK++T + +L+  S IED+V GL SGADDY+SKPF  EEL+AR+RA+ RR  
Sbjct: 61  SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  S  + +G++ ++L A T      ++ LT  E+ ++E L    N  L+++  L++++
Sbjct: 121 SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + +  ++DV+I  LR+KL      ++ I+TV G GY
Sbjct: 181 SYERDVQPSMVDVYISYLRRKLEQPT-KRDPIQTVRGVGY 219


>gi|220933773|ref|YP_002512672.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995083|gb|ACL71685.1| two component transcriptional regulator, winged helix family
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 220

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L  E   V +   G DG  L +   +D +ILDLGL D+ G 
Sbjct: 1   MRVLIVEDDAELGPRLRQRLAREGLAVDLAANGIDGRHLGETEPYDLVILDLGLPDLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A R A +S PV IL+      ++V GL++GADDY+ KPF+ EEL+AR++A++RR  
Sbjct: 61  DILTAWRRAGLSMPVLILTARDGWRERVEGLRAGADDYLGKPFHTEELLARVQALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +++  G   ++   +  +   G    LT  EY+++          L+K     HLY
Sbjct: 121 PVRDTVLHVGPWRLDEQRQCLLNESGEETALTATEYRLLRYFLRHPGEVLSKTQLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   E +  +++V++ +LR KL     G++ IET  G+GYVLR+ 
Sbjct: 181 EYESERDSNVLEVYVRRLRDKL-----GRDLIETRRGQGYVLRKT 220


>gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 230

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55
           MRILL+ED+  L  +++   K+ N   Y+ D  +DG E       ++ E++  I+D  L 
Sbjct: 1   MRILLVEDEPDLGEALK---KALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G ++++ LR  K S PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GISGLDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            RRS          G L ++   +TV  + H+ + LT KE+Q++E      N  LT E  
Sbjct: 118 GRRSPQLQPQQFQRGLLILDYGTRTVYYKNHQTLPLTTKEFQLLEYFFNHPNQILTSEQI 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            NHL++  +EP   ++   +  LR+KL    G KN IETV G GY
Sbjct: 178 RNHLWEMGEEPLSNVVAAQVRLLRRKLE-TVGSKNSIETVHGVGY 221


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++    I D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-NTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V +   G DGI + K    + +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  KIS  P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR+
Sbjct: 61  EVCRELR--KISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRT 118

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G    + ++V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H
Sbjct: 119 QGEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDH 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I ++R+K+         I+TVWG GY
Sbjct: 179 IWGYNFVGDTRTVDVHIKRIREKIEKDKYPWK-IKTVWGVGY 219


>gi|260768252|ref|ZP_05877186.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|260616282|gb|EEX41467.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
          Length = 214

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 11/219 (5%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEV 62
           +EDD  L   I   L+      +V +L +DGI+        E+D I+LDLGL  + G  V
Sbjct: 1   MEDDARLGEQIIASLEQTG---WVPELSQDGIDALYRATSEEWDVIVLDLGLPKLDGLTV 57

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ G+
Sbjct: 58  LKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRASGN 117

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A  ++  GDLS++  +  V  +G  I+LT  EY+++          +++   + H+Y   
Sbjct: 118 ASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQD 177

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +   I+VFI ++RKK++      N I+TV G GY L
Sbjct: 178 FDRDSNTIEVFIGRIRKKIA-----PNIIKTVRGLGYQL 211


>gi|221069766|ref|ZP_03545871.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714789|gb|EED70157.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+S    V +V +  E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRSSGAVVSHVANGSEADTALLTSSEFDLLILDLGLPKVHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   SIE++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKRLRGRGDALPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGASSTIKHGPLVYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V     G     +     +D ++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V V G  + LT  E++++ +L  R    +++     H+Y 
Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDVFI +LRKKL       + IETV G GY L
Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLP-----PDTIETVRGLGYRL 216


>gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
 gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++AL+ ++  +L+  N++V     G+  ++  +   +D ++LD+ +  + G 
Sbjct: 1   MRLLLAEDERALSKALTAILERNNYSVDAVYDGQSALDYLEADNYDGVVLDIMMPKVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R      P+ +L+  S ++DKV GL +GA+DY++KPF+ +EL+ARIRAI R   
Sbjct: 61  TVLRKVRERGNLIPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S +  G+++++  A  +        L  KE+QM+ELL    +  ++ E FL  ++ 
Sbjct: 121 AQANSKLKMGNVTLDRAAFELSTSKGSFRLANKEFQMLELLMCNPHQLISSERFLEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E E+ ++ V+I  LRKKLS A      I+     GY L E +
Sbjct: 181 YDSEAEINVVWVYISYLRKKLS-ALHADIQIKATRNAGYSLEERS 224


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E + V V   G D +       +DAI+LDL L  + GF
Sbjct: 30  MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    PV +L+    ++D++RGL +GADDY+ KPF+  EL AR+RA+VRR  
Sbjct: 90  EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++     V   G  + L+ KE+ ++ LL    +  LT+   ++H++D
Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    I+D ++  +R+K+ +   G + IETV G GY LR  A+
Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLRTPAE 254


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  ++  +E+ L+SE + V   D G D +E  +  E D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +LR +R     T V +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R    
Sbjct: 64  LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL +N   + V   G RI LT +E+ ++  L   K   L +E  L
Sbjct: 124 PLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      +  ++DV+I  +RKK+ +  G +  I TV G GYVL+EN
Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKIDH-GGTQELIHTVRGVGYVLKEN 231


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L KF E     +ILDL L  + G
Sbjct: 17  ILIVEDEKDIARFIELELQAEG---YRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDG 73

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ IL+   ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 74  LEVARRIRKTS-NIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV 132

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++
Sbjct: 133 TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 193 PGY-QGGSNVVDVYIGYLRKKL-EAEGERRLIHTVRGVGYVLRED 235


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ ++  +   L  E F V     GE+ +++    +F+ I+LDL L  I G E
Sbjct: 4   KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R +K   PV I+S      DK  GL  GADDYISKPF+  E++ARI+A +RR R 
Sbjct: 64  CLRMIR-SKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  SL       I  GDLSV+L   +V+    +I+LT KE+ +++L     +   TK   
Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +++     +  +I+V I +LR+K+ +      YI+T+WG GY L
Sbjct: 183 YKSVWEDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+      +   L+   F V     G +G++L     ++ +ILD+ L  + G+
Sbjct: 1   MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  +  TPV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  QLLRELRKVR-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SLI   D+ +++  + V   G R+ LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV I +LR KL +    +  I+TV G GYVL E 
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPH-PRKLIQTVRGIGYVLEEG 222


>gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 223


>gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
 gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   I   LK E ++V     G++  E     ++DA+ILD+ +    G 
Sbjct: 1   MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K STPV +L+   S+ED+V GL +GA+DY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++     DL V+LD   V      I L+GKE+ ++  +       L+++    HL++
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   +IDV+I  LRKK+ +    K  I TV G GYVL+E
Sbjct: 181 YDYMGSSNVIDVYIRYLRKKIDDGR-EKKLIHTVRGVGYVLKE 222


>gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57
            RIL++EDDKA++  +EL L    +NV    + +DG E  KFYE    D I+LD+ L   
Sbjct: 2   FRILVVEDDKAISRLLELELTHVGYNV---KIAKDGDEALKFYENFKPDIILLDIMLPIR 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV  A+R       + +++    +E KV+GL++ ADDY+ KPF  EE++ARI A+++
Sbjct: 59  DGFEVAEAIRDYDSDIGIIMITAKGELESKVKGLKN-ADDYVVKPFEIEEILARIEALLK 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G  + LI  GD+ +      V V    +HL+  E+ +++LL++ KN  ++KE  L  
Sbjct: 118 RM-GKTKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEE 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   DE    +++V+I  LRKKL ++      IETV G GYV+RE
Sbjct: 177 IWGYYDEENNNLVEVYINYLRKKLKDSTQN---IETVRGVGYVIRE 219


>gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri
           93-146]
 gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri
           93-146]
          Length = 220

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+     D       L +   +  IILDLGL DI G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMARENYAYDCADSAVGASALLQSSHYSLIILDLGLPDIDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I  PV IL+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  NALRQWRREGIDAPVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   D+ ++L ++ V   G  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GLCNNFLQVDDIHLDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D      ++V I  LR+KL     GK  I+T+ G GY L
Sbjct: 181 WQDGLSSNSLEVHIHNLRRKL-----GKKRIKTLRGVGYRL 216


>gi|125717796|ref|YP_001034929.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125497713|gb|ABN44379.1| Two-component response transcriptional regulator (CheY-like
           receiver domain and a winged-helix DNA-binding domains),
           putative [Streptococcus sanguinis SK36]
 gi|324990861|gb|EGC22796.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993111|gb|EGC25031.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995585|gb|EGC27497.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687908|gb|EGD29928.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|327461377|gb|EGF07708.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327469539|gb|EGF15008.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327489235|gb|EGF21028.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946064|gb|EGG40210.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332361465|gb|EGJ39269.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   I   LK E ++V     G++  E     ++DA+ILD+ +    G 
Sbjct: 1   MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K STPV +L+   S+ED+V GL +GA+DY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++     DL V+LD   V      I L+GKE+ ++  +       L+++    HL++
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   +IDV+I  LRKK+ +    K  I TV G GYVL+E
Sbjct: 181 YDYMGSSNVIDVYIRYLRKKIDDGR-EKKLIHTVRGVGYVLKE 222


>gi|91790516|ref|YP_551468.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91699741|gb|ABE46570.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++      +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF+ +EL AR+RA++RR 
Sbjct: 61  LEVLKRLRARGSALPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGQMLELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  LK ++++V     GE+ + L +  +FD I+LDL L  + G E
Sbjct: 4   RILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR+  
Sbjct: 64  LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +A++        +I   DL ++L + +V+V+G  + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++        +I+V I +LR+K+        YI T+WG GY
Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGY 228


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ ++L K   +D I+LD+ L    GFE
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  AQ    +I+ GD+ ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RDKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228


>gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDDK ++  I   L+  NF V++ + GE   +L +   +D I++D+ L  I G 
Sbjct: 1   MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  KI TP+ ILS +S+ +DKV  L SGADDY+ KPF+ +EL++R+ A+ RR++
Sbjct: 61  QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++L   G L++N D   V      I L+ +EY+++  L   +N  +++   L  
Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +    ++DV+I  LR K+ +      +I T+ G GY+L+E
Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIEH---NHKFIHTIKGIGYMLKE 223


>gi|331091615|ref|ZP_08340449.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403372|gb|EGG82931.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K L+ +++ +L+  +++V     G   ++  +   +D +ILD+ +  I G 
Sbjct: 1   MRLLLVEDEKPLSRALKAILERNHYSVDAVYDGRAALDYLEADNYDGVILDIMIPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R    S PV +L+  S +EDKV GL SGA+DY+SKPF+ EEL+ARIRA+ R   
Sbjct: 61  TVLKTIRSCGNSIPVLLLTAKSEVEDKVLGLDSGANDYLSKPFHAEELLARIRAMTRTQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G++ ++     +       +L  KE+QM+EL+ L  N  ++ E F+ +++ 
Sbjct: 121 AQNDSKLQIGNIILDRATFELSTPSGSYNLANKEFQMLELMMLNPNHLISAEKFIENIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E+ ++ V+I  LRKKL+ A      I+     GY L E
Sbjct: 181 YDSEAEMNVVWVYISYLRKKLA-ALHANVRIKVTRNVGYSLEE 222


>gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
          Length = 227

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 2   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E         L + +  + ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 222


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A +++ +L   N+ V +   G+   EL + +E+D I+ D+ L  + G 
Sbjct: 1   MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+G  S  D+  GL +GADDY+ KPF+ EEL AR+RA++RR  
Sbjct: 61  GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++  A  V+ Q   + LT KEY ++EL+        +  M L H++ 
Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D P  + +   I  LR+KL  +    + IETV+G GY L+  A+
Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 14/127 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLT 55
           RI++++DD  +  ++  + K     V   D      E  +F+E       D ++LD+ + 
Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLD------EPTQFWETLTNSPPDLLLLDVEMP 542

Query: 56  DIPGFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           +I G ++ R +R  +     P+  L+  +  +   +   SGADD+ISKP    ELV RI 
Sbjct: 543 EIGGIDLCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRIL 602

Query: 114 AIVRRSR 120
             + R+R
Sbjct: 603 NRLERTR 609


>gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 135/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F+V ++  G +G+     Y++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYLSRALGESGFSVDISADGAEGLHYALEYDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  +R +K  TP+ +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGIRASK-QTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFEVKLLHTVRGMGYVL 221


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYILKEQ 229


>gi|297567509|ref|YP_003686481.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851958|gb|ADH64973.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 218

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 135/221 (61%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   ++  L++E + V     GE+ + L + + +D ++LD+GL    GF
Sbjct: 1   MRILLVEDDLEVGSLVKETLEAEPYAVDWAQDGEEALGLWQSFPYDLVVLDVGLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR    + PV +L+    ++D+VRGL++GADDY+ KPF+  EL AR+RA++RRSR
Sbjct: 61  SLLTHLRGQGGAAPVLMLTARDGLDDRVRGLEAGADDYLIKPFHLRELRARVRALLRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + +  G LS++L AK    +G  + L+ KE+ ++E LSL  +T   +E  L H++ 
Sbjct: 121 GVSSNRVEVGRLSLDLRAKQAWWEGEPLELSAKEWLILEFLSLHPDTFYPRESLLEHVWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    + + +D +I +LR+KL+  A     IET  G GY L
Sbjct: 181 GEASIDPRSLDPYISRLRQKLAPEA-----IETRRGLGYRL 216


>gi|77465512|ref|YP_355015.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389930|gb|ABA81114.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 220

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  +A  + + L S  F V     GE    L     +D I+LDLGL  + G 
Sbjct: 1   MRALVVEDDARIAQDLSVALGSAGFRVETAADGETAWFLGGTEGYDLIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   +  PV +L+   +  ++V G+ +GADDY+ KPF  EELVAR RA+VRRS 
Sbjct: 61  AVLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L   G L+++++  T  + G  + L   E++++  L L ++  +     L HLY 
Sbjct: 121 GRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   ++  + +LR+K+     G+  I T  G GY L
Sbjct: 181 DNDAREANALEAVVARLRRKV-----GRGVIGTRRGFGYQL 216


>gi|146280320|ref|YP_001170476.1| cold-shock DNA-binding domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145558561|gb|ABP73171.1| putative cold-shock DNA-binding domain protein [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 222

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ LA  I   L    + V +   GE+G  L       A +LDLGL  I G 
Sbjct: 1   MKVLVVEDDRDLAGQIAAALAQAGYTVELAHDGEEGEFLGATETVGAAVLDLGLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R A +S PV IL+   +  DKV G ++GADDY+ KPF  EE+  R+ +++RR+ 
Sbjct: 61  EVLRRWRGAGLSFPVLILTARDAWSDKVAGFRAGADDYVLKPFRMEEVTLRLSSLIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G L ++       ++G  + LT  E +++  L L K   +++     H+YD
Sbjct: 121 GHATAELAAGGLVLDTATGLATLEGMPLRLTAFEARLLRYLMLNKGRVVSRTELSEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + + ++V I +LRKK+     G+  +ET  G GY L
Sbjct: 181 RDADRDFRSLEVVIGRLRKKI-----GEARVETRRGEGYRL 216


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL  ED+ AL       LK+E F V     G + ++     ++D +ILD+ +  I G 
Sbjct: 1   MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV +L+   ++ D+V GL +GADDY++KPF   EL ARIRA++RR+ 
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +        DL+V    + V   G  I L+ +E+ ++E L   K   L++    N ++D
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    I+DV+I  LRKK+ +    K  I TV G GY LRE
Sbjct: 181 FGFEGGSNIVDVYIRYLRKKIDDPF-EKKLIHTVRGAGYTLRE 222


>gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 224

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221


>gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae
           F3031]
 gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3031]
          Length = 220

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L +  F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++V+ LQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LEVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 -GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 179 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 215


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           RIL+I+DDKAL   +    +  +  V     G DGI+ +      D ++LD+ L DI GF
Sbjct: 4   RILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR+ 
Sbjct: 64  ETLKKIR-AISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122

Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             A++  V+         G + ++   + +   G  I +TG E  ++  L   K T LT+
Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182

Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  L+ L  GRD E   + IDV I ++RKKL +      YI+TVWG+GY+  E
Sbjct: 183 DRLLD-LASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234


>gi|77460076|ref|YP_349583.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384079|gb|ABA75592.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    FN  +   G  G +L    ++  +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGQYLRQGLTEAGFNTELVADGTTGQQLALSGDYALLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TP+  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLETPILFLTAKDTVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DLS++L  + VE  G RI LT KE+ ++E+L  R+   L K +  + ++
Sbjct: 121 STPQETSLRLADLSLDLIRRRVERSGQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E A
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEERA 225


>gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/226 (40%), Positives = 128/226 (56%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL +ED+K +A +I  +LK  N++V V   GE G+++     +D IILD+ L    G 
Sbjct: 1   MKILYVEDEKYMARAIAQVLKKNNYSVDVCYDGESGLDMALTDLYDIIILDILLPQKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     TPV +L+    +EDKV GL SGADDY+ KPF  EEL+AR+RA+ RR +
Sbjct: 61  SVLRELRRKGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALGRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G      L+   D+ +N     +  +G+  HLT KE Q++ELL   K T L+  + +  L
Sbjct: 120 GQFLPDGLLRFEDIELNPHTLNLYCKGNSFHLTLKESQLLELLIRNKGTLLSPNLIIEKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLS---NAAGGKNYIETVWGRGYVL 221
           +    E E   + V +  LRKKL+   +  G KN    V G GYVL
Sbjct: 180 WGYDTEAEDSHVRVHVAFLRKKLALLQSVVGIKN----VRGAGYVL 221


>gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120]
 gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120]
          Length = 610

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  +++ V +   GE   EL     ++ I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A     + +L+   S  DK+ GL +GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++  +  V      ++LT KE+ ++EL       T ++   +  L+ 
Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180

Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +D PE   I   I  LR+KL  A     +IETV+G GY L+  A +  C
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRLKALAHEANC 231


>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
 gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA  ++ +L+   F+V   + G D ++     ++D I+LD+ +    G 
Sbjct: 1   MRILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R    + PV +L+  S IED+V GL++GADDY+ KPF   E +AR++A+ RR+ 
Sbjct: 61  EVLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A +++  G++ ++ +   +  +   + L  KEYQ++EL     +   + +  ++ ++ 
Sbjct: 121 GYADTVLSLGNVRLDCNRYELSCKEETVRLNNKEYQLMELFFQHPHFVFSTDHLMDKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E ++ ++  +I  +RKKL +  G    I+TV G GY L  N
Sbjct: 181 KDSEADIDVVWTYIGFIRKKLKH-IGADIEIKTVRGAGYSLEGN 223


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 131/224 (58%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+   F V   + GE+ IE   F +   IILDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 119 SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G  ++  IV GDL +  D+     +G R+ LT KE++++  L+  K   LT++  L+ 
Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     + +I+DV I  LR+K+        YI+T+ G GY L
Sbjct: 184 VWNYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKL 227


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans]
 gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 127/229 (55%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL EDD  LA  +   L+      YVTD  ++G+E        +FD +ILDLGL  +
Sbjct: 1   MRILLAEDDSVLADGLTRSLRQSG---YVTDCVKNGVEADSALSTQDFDLLILDLGLPKM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   SIE +V+GL  GADD+++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   ++I  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L +  +E     I+V++ +LRKK+     G   I TV G GY L + A+
Sbjct: 178 LCEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEKFAE 223


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E +     + G  G++L    ++D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRITI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFNSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|299534067|ref|ZP_07047419.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298717976|gb|EFI58981.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 209

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEVLRALRV 68
           +  ++  +L+ E    YV D  +DG +       +++D ++LDLGL  + G +VLR LR 
Sbjct: 2   IGQAVLALLRGEG---YVVDWVQDGAQADTALHGHQYDLVLLDLGLPKLDGLQVLRQLRA 58

Query: 69  AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV 128
            K +TPV + +   ++ D++ GL +GADDY+ KP++ +EL+ARIRA+ RR+ GH  ++  
Sbjct: 59  RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118

Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188
            G + +N + +   V G  + L+G+E+ +++ L  R   TL+++   + LY   DE    
Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDEVSSN 178

Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++V+I  LRKKL  AA     +  V G GY++
Sbjct: 179 AVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 206


>gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
 gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
          Length = 232

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 5/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F V +   G DG+      ++  IILD+ L  + G+
Sbjct: 1   MKILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A+   P+ +L+    +EDKV+G + GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + +  T     DL ++L  + V   GHRI LT KE+ ++ELL  R+   L + +  +
Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H++D   + +  +IDV I +LR K+ ++   K  I TV G GYVL    +D+
Sbjct: 181 HVWDMNFDSDTNVIDVAIRRLRNKIDDSYTPK-LIHTVRGVGYVLDLREEDD 231


>gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 225

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL +ED+  +A  +   LK + F V   D G++G       E+D ++LD+ L    G 
Sbjct: 1   MNILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR +  + PV +L+  + ++D++ GL  GADDY++KPF  EEL+ARI A++RR  
Sbjct: 61  AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+++  G L ++   + V      + LT +E+ ++E L       LT+   L H++ 
Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               P   ++DV I ++RKKL    GG + IE+V G GY  R+
Sbjct: 181 YDFNPTTNLVDVCIQRIRKKLER-MGGASCIESVRGVGYCFRK 222


>gi|328956092|ref|YP_004373425.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328456416|gb|AEB07610.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 221

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/219 (38%), Positives = 124/219 (56%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ + + V     G+   EL     +D +ILDL L    G 
Sbjct: 1   MRLLVVEDERDLADAIAEGLRLDGYAVETCADGQMASELLAVESYDLVILDLNLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR +     V ILS  SS+ D+V GL SGA+DY+ KPF  EEL ARIRA+  RS 
Sbjct: 61  EILRELRESARDIKVLILSARSSVADRVNGLDSGANDYLIKPFAFEELEARIRALTHRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S++  GDL ++   +T+ V    I LT KE  ++E L L +   +++E  L+H++D
Sbjct: 121 TQAASVLRCGDLRLDTIGRTLRVGSREIALTRKELAVLEHLLLHRGEVVSQEDLLDHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   ++ V +  LRKKL  A  G + ++T  G GY
Sbjct: 181 RDANTFSNVVRVHVASLRKKL-RAEVGDDVVKTRIGEGY 218


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 8/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+  L   I L L+ + + V     G   +E      FD I+LDL L +  GF
Sbjct: 1   MRVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV +L+    ++ +V+GL  GADDY+ KPF+  EL+ARIRA++RRS 
Sbjct: 61  TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++ ++ + + V +    + LT KE+ ++E L   +N  +++     H++ 
Sbjct: 121 EQISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWG 180

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +P      IDV I  +RKKL N  GG+  I TV G GY+    AKDE  
Sbjct: 181 DAFDPFTMSNNIDVHIKNVRKKL-NDQGGR-IIVTVRGVGYM----AKDEQA 226


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica]
 gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+      ++G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|255319016|ref|ZP_05360238.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
 gi|255303921|gb|EET83116.1| transcriptional regulatory protein QseB [Acinetobacter
           radioresistens SK82]
          Length = 221

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ++L+EDD  +AHSI   L   N +V             +    D  +LDLGL D  G 
Sbjct: 1   MFVVLVEDDPYIAHSICAALDFLNISVEHVSTASAADYFIRHSAVDLCLLDLGLPDQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  +I TP+ +L+        +  L  GADDY++KPF  +ELVAR+ A+ RR R
Sbjct: 61  ELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKPFELDELVARLHALTRRHR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +++   DLS+N D + V  Q   I L+ +EY ++E L    N  L  E  L+ LY 
Sbjct: 121 GFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLMSHPNQILKNEQLLDKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D  E   ++V I  LR+KL+      ++I+T+ G GY+ +
Sbjct: 181 YQDSIESNALNVHIYHLRQKLN-----ADFIQTIRGVGYMFK 217


>gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  +   L+     +     G DG+ L     +DA+I+D  L  + G 
Sbjct: 1   MRILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +++ALR A  +TPV +LS +  ++D+VRGL++G DDY+ KP+   EL+ARI A+ RR S
Sbjct: 61  SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+ V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+      K++    I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVD-----KDFELPLIHTVRGAGYTLR 222


>gi|78776518|ref|YP_392833.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497058|gb|ABB43598.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 224

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A  I+  L+ E+++V VT  G + I L +   +D ++LDL +  + G 
Sbjct: 1   MRILVVEDDEKIASFIKKGLQEESYSVDVTSNGYEAIYLVETNSYDIVLLDLMIHGLGGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R   I+TP+ +L+   +I+DKV GL  GA+DY++KPF+ EEL+ARIR+ + R+ 
Sbjct: 61  DVCKNIRGKNIATPIIMLTARDAIKDKVEGLDCGANDYLTKPFSFEELLARIRSKL-RTT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I   DL++N   + V+    +I+LT KEY ++E L+      L++ +   +L D
Sbjct: 120 STLSSTIAIADLTINTARREVKRGDKKINLTAKEYALLEYLARNSKKLLSETIIKENLSD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     I++V+I +LR K+      K  I TV G GY+L E
Sbjct: 180 MAEVSMSNIVNVYIYRLRNKIDKDYEPK-LIHTVRGLGYMLSE 221


>gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+  A  I   L+           GE+G+E+ +  E+D +++D  +  + G 
Sbjct: 1   MRILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            ++ ALR     TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  SMVEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRD 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +V GDL ++L A+TV  +G  I L  +E++++E L       +T+ M L  ++
Sbjct: 121 PDTVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      ++ + TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKPF-PRSLLHTVRGAGYRLQ 222


>gi|239818155|ref|YP_002947065.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804732|gb|ACS21799.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 223

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA ++   L++    V +V +  +    L    EFD +ILDLGL ++ G
Sbjct: 1   MRILIAEDDQVLADALLRSLRTSGAAVDHVANGSQADTALMTHSEFDLLILDLGLPNLHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ LR      PV +L+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGATSNTIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E  +  I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSLNAIEVYIHRLRKKIEK---GPVRIATVRGLGYCL 219


>gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 232

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  +   L  E F V V   G DG+ L     +D I+LD  L  I G 
Sbjct: 4   MKVLVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGMLPGIDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+    +ED+VRGLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 64  AVLAALRQSR-QTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSV 122

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A      +++   DL ++L  +     G R+ LT KE+ ++ LL  R+   L++    
Sbjct: 123 GTAHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++D   + E  +++V + +LR KL      +  + TV G GYVL   A
Sbjct: 183 SQVWDMNFDSETNVVEVAVRRLRLKLDQPF-EQPLLHTVRGMGYVLESRA 231


>gi|254490732|ref|ZP_05103915.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463904|gb|EEF80170.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 219

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 12/226 (5%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGF 60
           +L+EDD  L  +++  L    F    TDL EDGI+   +     +D I+LDLGL    G 
Sbjct: 1   MLVEDDPVLGPNLQSALNKSGF---ATDLSEDGIDGEAMGDIEPYDLIVLDLGLPGQSGL 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R  + +TPV IL+   + EDKV G ++GADDY++KPF  EEL+ RI A++RRS 
Sbjct: 58  EVLKNWRQRENATPVIILTARDAWEDKVLGFKAGADDYLAKPFQTEELLVRINAVLRRSS 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G +   + +  L ++   ++V ++ G  + LTG E++++    L +   L+K     H+Y
Sbjct: 118 GLSPGTLNSDGLILDESKQSVTLKSGENLALTGTEFKLLRYFMLHRGKLLSKTTLTEHVY 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + +  +++V++ +LR+KL     G + I T  G+GYV   ++
Sbjct: 178 QLDSDKDSNVMEVYVNRLRQKL-----GPDLIHTRRGQGYVFGNDS 218


>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 228

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I+  L    F + + TD G  G        +DA+ILDL L  + G
Sbjct: 1   MRILLIEDDKMIGDGIKAGLAKLGFTLDWFTD-GLTGKAALDSAPYDAVILDLSLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R A   TPV IL+   ++E +V GLQ+GADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  MQLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +  G +  +  A++V + G  + LT +E  ++EL    K   L + +    LY
Sbjct: 120 HGVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              DE     ++V I  LR KL     GK +I TV G GY L +  K
Sbjct: 180 SWEDEVSSNAVEVHIHHLRSKL-----GKGFIRTVHGVGYTLGDEIK 221


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++  + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 221

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +   LK   F V  T  G+      +  E+  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDALLGDGVRAGLKQAGFAVDWTQDGQAAKLALETEEYALMVLDLGLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A ++ PV +L+   ++ D+V GL +GADDY+ KPF+ +EL+AR+ A++RRS 
Sbjct: 61  DVLKWLRGANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GD+ +      V   G  + L  +E+ +   L L      ++E    HLY 
Sbjct: 121 GQVTLTLQHGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
             +E E   ++V I  LRKKL +A      I T+ G GYV+ +E+A
Sbjct: 181 WGEEVESNSVEVHIHHLRKKLGSA-----LIRTIRGVGYVIDKESA 221


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  137 bits (344), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +   L +  F V V + G+   E      FD ++LD+GL  + GF 
Sbjct: 3   RILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   PV IL+   S++D V GL+ GADDY+ KPF  EEL+AR+R  +   R 
Sbjct: 63  VLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  +   V G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 123 QEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +P   ++DV++  LR+KL     G + I TV G GY L E 
Sbjct: 183 DFDPGSNVVDVYVRYLRRKL-----GADRITTVRGMGYRLEER 220


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     G D ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 133/223 (59%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    + V +   G +G+ L   Y++DAIILD+ L    G+
Sbjct: 1   MRLLLVEDEEKTSSYIYRALSELGYMVDIAADGIEGLHLAVQYDYDAIILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR+ K  TPV +LS   S++++V+GL+ GADDY+SKPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRV 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   D+ ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V + +LR K+      K  + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKVDTPYTVK-LLHTVRGMGYVL 221


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 133/221 (60%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L++EDD+ L  ++E   + E F V +   G   ++  K   +D IILD+ +  I G 
Sbjct: 3   LKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + LR+     P+ +L+  S +EDK+ GL++GADDYI+KPF+ +EL+ R++ ++RR  
Sbjct: 63  KVCKQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYN 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  IV  DL+++L    V  +G  I+LT KE++++++L+   N T+ +E+ LN ++ 
Sbjct: 122 KVQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I+DV+I  +R KL +       I T+ GRGY+L
Sbjct: 182 IASDYDSNIVDVYIKNIRNKLEDKPP--KLILTIRGRGYML 220


>gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius
           str. 'morsitans']
 gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 222

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDDK L   ++  L+ E+F     ++LG+    L     +  IILDLGL D  G
Sbjct: 1   MKILVIEDDKLLREGLQQALEQESFACECASNLGQ-SWPLLTSTTYSLIILDLGLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR      PV IL+   +I+++VRGL  GADDY+ KPF   EL+AR RAI+RR 
Sbjct: 60  MTLLEKLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G + +L+   D+S++L    V V G  + LT KE+ ++  L LR    + +E+    LY
Sbjct: 120 QGVSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D+P    ++V I  LR+K+     G+  I+T+ G GY+L
Sbjct: 180 SWDDDPSSNSLEVHIHHLRQKI-----GRGRIQTLRGFGYLL 216


>gi|327474015|gb|EGF19428.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L        V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVTQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ + H + L LK   +       G DG+ L      D ++LD+ L  I GFE
Sbjct: 4   KILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A   TP+ +L+  S+ +D++ GL+ GADDY+ KPF+  ELV+R+RAI+RR   
Sbjct: 64  VCRRIR-AWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     ++   +S++    LSV+L A+ VEVQG  + LT  E+ ++ L++   +  
Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            T+E+ +N ++      +   IDV I  LRKK+  A   + YI+TVW  GY
Sbjct: 183 FTREILMNKVWGYDYLGDGHTIDVHISALRKKI-EAGEQQRYIKTVWRVGY 232


>gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 6   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 66  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GYVL
Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNEFEPK-LIQTVRGVGYVL 226


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DD+ +   +   L  E + V + + G++G++L    + D +ILD+ +  + G+E
Sbjct: 4   RIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R A    PV +L+ M  ++D+V+GL  GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 64  VCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPD 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R      +   D++++LD++     G RI LT KE+ ++ L        LT++  ++ ++
Sbjct: 124 RQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K  +    K  I+TV G GYVLR
Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEDGT-AKRLIQTVRGTGYVLR 225


>gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17]
 gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17]
          Length = 221

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 123/231 (53%), Gaps = 19/231 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           MR+LL+ED   L  +++  +  +   V       D ++   F E       ++ I+LDL 
Sbjct: 1   MRVLLVEDTTGLGEAVQDQISEDGHAV-------DWVQSLAFAETSVKTTPYNLILLDLM 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  GF+ L+ LR    +TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ 
Sbjct: 54  LPDGHGFDFLKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVA 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+ RR RG+   L+  GDL V+L  + ++  G  + LT +E+ + E    R    L++  
Sbjct: 114 AVARRYRGNPNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQ 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + LY+   E E   I+V+I ++RKKL     G + I TV G GY L  N
Sbjct: 174 LEDRLYEFGAEIESNTIEVYISRMRKKL-----GHDAIVTVRGMGYRLEPN 219


>gi|323351770|ref|ZP_08087424.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122256|gb|EFX93982.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKDGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43]
          Length = 240

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 134/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR+RA++RR++ 
Sbjct: 69  VCRRIR-GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRAQP 127

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GASVESPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|53716767|ref|YP_105784.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           23344]
 gi|167722921|ref|ZP_02406157.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           DM98]
 gi|167741901|ref|ZP_02414675.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 14]
 gi|167819082|ref|ZP_02450762.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 91]
 gi|167827467|ref|ZP_02458938.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 9]
 gi|167848936|ref|ZP_02474444.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           B7210]
 gi|167897542|ref|ZP_02484944.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           7894]
 gi|167905895|ref|ZP_02493100.1| DNA-binding response regulator TctD [Burkholderia pseudomallei NCTC
           13177]
 gi|167914202|ref|ZP_02501293.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 112]
 gi|167922113|ref|ZP_02509204.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           BCC215]
 gi|254179157|ref|ZP_04885809.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           10399]
 gi|254189737|ref|ZP_04896246.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254193179|ref|ZP_04899614.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13]
 gi|254356588|ref|ZP_04972863.1| DNA-binding response regulator TctD [Burkholderia mallei
           2002721280]
 gi|52422737|gb|AAU46307.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           23344]
 gi|148025615|gb|EDK83738.1| DNA-binding response regulator TctD [Burkholderia mallei
           2002721280]
 gi|157937414|gb|EDO93084.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160694484|gb|EDP84494.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC
           10399]
 gi|169649933|gb|EDS82626.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13]
          Length = 223

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  ++  +E+ L+SE + V   D G D +E  +  E D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           +LR +R     T V +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R + +
Sbjct: 64  LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H     A   +   DL +N   + V   G RI LT +E+ ++  L   K   L +E  L
Sbjct: 124 PHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      +  ++DV+I  +RKK+ +  G +  I TV G GYVL+E 
Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DYGGTQELIHTVRGVGYVLKET 231


>gi|33597212|ref|NP_884855.1| two-component response regulatory protein [Bordetella parapertussis
           12822]
 gi|33573639|emb|CAE37924.1| two-component response regulatory protein [Bordetella
           parapertussis]
          Length = 229

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 125/238 (52%), Gaps = 12/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  L   +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILTDGLS---RSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           PG EVLR LR      PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  PGLEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           L +  +      I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL +
Sbjct: 178 LCEWGEAVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGASYLAS 229


>gi|239816259|ref|YP_002945169.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802836|gb|ACS19903.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 129/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD ALA ++   L ++ F V V     D        ++ A++LDL L D  G 
Sbjct: 1   MRILLVEDDSALADAVCSYLVAKAFVVDVAPSLADARSALLSVQYAAVLLDLHLGDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  +    V +L+    + D++RGL +GADDY+ KP++  EL+AR+RA+ RR  
Sbjct: 61  SLLPQVRALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARLRAVERRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++  G L ++L    V   G+ + LT KE+ ++ +++ R     T+E   + LY 
Sbjct: 121 AGSSPVLHLGTLEIDLAHDRVRKDGNPVVLTQKEWALLRVMATRPERIHTRENLADALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DE +   ++VFI +LR+KL     GKN+I+T+ G GY L  ++ D+
Sbjct: 181 FGDEADSNTLEVFISRLRRKL-----GKNHIQTLRGLGYRLSTSSGDD 223


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  ILD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLTGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ L+   DLS+N   + V  +   I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 AEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  II+V+I  LR KL      K  I TV G GY LRE +
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-NNEKRLIHTVRGVGYALREQS 226


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F V V   G D I + +  + D +ILD+GL  I G E
Sbjct: 18  RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 78  VCRQLRTFSDAY-IVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR- 135

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             QS   T           G LS+N+ A+ V + G +I LT  E+ ++E LS R    L+
Sbjct: 136 VLQSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLS 195

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  + DG       ++DV I  LR+KL + A    YI TV G GY
Sbjct: 196 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGY 244


>gi|222153107|ref|YP_002562284.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113920|emb|CAR42131.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKLLLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I TPV I++   +I+DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKDIKTPVLIMTAKETIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  G++ V+ D   V V    I L GKEY+++      +N  L K    + ++ 
Sbjct: 121 KFNNNLIRYGNIQVDTDRNMVTVNQENIELLGKEYELLIYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V+I K+RKKL +     N ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYISKIRKKLKSTDFATN-LQTLRSVGYILKSN 223


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 133/224 (59%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  + L L+ E + V V + G DG++  +   FD ++LD+ L ++ G E
Sbjct: 5   KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VLR +R    +TP+ +++   S+ DKV GL  GA+DYI+KPF+ EEL+ARIRA +R    
Sbjct: 65  VLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIH 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++   ++ +   DL+VN   + ++  G  + LT +E+ ++  L   +   LT++  L  +
Sbjct: 125 AQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+ +    K  I TV G GYV++
Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227


>gi|239834923|ref|ZP_04683251.1| two-component response regulator [Ochrobactrum intermedium LMG
           3301]
 gi|239822986|gb|EEQ94555.1| two-component response regulator [Ochrobactrum intermedium LMG
           3301]
          Length = 280

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   +A +I   L+ E  +V     G  G +L     FD I+LD+ L    GF
Sbjct: 56  MRILLVEDTIDIAFAIASKLEKEGHSVTTAYDGVQGEDLAVNGSFDLIVLDINLPGRDGF 115

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR++R   +S PV +++  + I DK+  L+ GADDY+ KPF+  EL ARIRA+ RR  
Sbjct: 116 AILRSMREQSLSCPVLVITARNQIADKIDLLELGADDYLVKPFDLRELFARIRAVARRHM 175

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++  G+LS+NL  ++V      +    +E+ ++E+L+ R N T+ K+M +  L+ 
Sbjct: 176 GVAQPVLRIGELSINLTQRSVMQGDGPLDFGRREFDVLEMLATRFNVTVPKDMLVLKLFG 235

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D      I++ + ++RKKL ++      I T  G GY+LR  A 
Sbjct: 236 HEDTGTPNAIELLVSRVRKKLEHSTV---EIVTQRGVGYLLRLKAP 278


>gi|85710480|ref|ZP_01041544.1| putative transcription regulator protein [Erythrobacter sp. NAP1]
 gi|85687658|gb|EAQ27663.1| putative transcription regulator protein [Erythrobacter sp. NAP1]
          Length = 250

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL +EDD   A ++  + +     +   + G   +       FD IILD  L DI G 
Sbjct: 26  LRILYVEDDARSAAAVSELAEQSGDVIVWEEQGSGALLRAGMEAFDVIILDRMLDDIDGL 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR + I TP+ ILS +    D+  GL +GADDY++KPF  EEL+AR+RA+ RRS+
Sbjct: 86  TITKRLRESGIGTPILILSALGRSADRTDGLDAGADDYMAKPFEPEELMARLRALHRRSQ 145

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S +I+ G    +L A+T       + L+ KE+++          T+T+EM L  ++
Sbjct: 146 GREHSAVIIYGAFECHLKARTAFRDNRHLALSPKEFELFRYFMENAGETVTREMLLRDVW 205

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +P+  ++DV I +LR+KL         +ET+WG GY
Sbjct: 206 KMDFDPQTNVVDVNIGRLRRKLEEGFDAPA-LETIWGSGY 244


>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL +ED+KAL  +I  +L  E + V + D G+DG+ L +   +D ++LD+ +  + G 
Sbjct: 1   MLILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIYDLLVLDIMMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            ++R LR   I TPV  L+   S+E +V GL +GADDY+ KPF  EEL AR+RA++RR  
Sbjct: 61  SLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + + +  +  G LS+ ++     V    + LT KEY++++     +   LT++   + ++
Sbjct: 121 KQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E    ++D+++  LRKKL    G   +I T+   GY+L++  K
Sbjct: 181 GIDSEANYGVVDLYVHYLRKKLGAYEG---FIRTIRNVGYILKKENK 224


>gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 219

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   IE  L+   F V +  D  + G+ L     +  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTV-YALVVLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ LR +    PV +L+  S++ D+V GL++GADDY+ KPF+  EL+AR RA++RR+
Sbjct: 60  MELLKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +   I   DL+VN  A+TVEV   R+ LT +E+ ++  L   +    ++      LY
Sbjct: 120 QGRSVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++E E   I+V +  LRKKL     G   I+TV   GYV+
Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVM 216


>gi|157147945|ref|YP_001455264.1| DNA-binding transcriptional regulator BasR [Citrobacter koseri ATCC
           BAA-895]
 gi|157085150|gb|ABV14828.1| hypothetical protein CKO_03752 [Citrobacter koseri ATCC BAA-895]
          Length = 222

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHCLETGHYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L +NL  + V + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHHNQGESELTVGNLMLNLGRRQVWLAGQELILTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|158319376|ref|YP_001511883.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139575|gb|ABW17887.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K LA ++  +LK   + V     GEDG++      +D IILD+ L  + G 
Sbjct: 1   MKVLLVEDEKHLAEALLQILKKNKYTVDGVYNGEDGLDYALTGIYDVIILDIMLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R  KISTPV +L+  S + D+V+GL  GADDY+ KPF+ EEL+AR+RA+ RR +
Sbjct: 61  EILKSIRKKKISTPVLLLTAKSEVSDRVKGLDLGADDYLPKPFSTEELLARLRALTRR-K 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +  +   + S+NL    +E +   + L  KE ++++   LR    + KE  +  +
Sbjct: 120 GEVINEDTLSFSNFSLNLSTYLLEGEKTSVRLALKEVEILKYFMLRPRIIVNKEDLIIKV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E E   I+V+I  LRKKL      +  I T+ G GY L E
Sbjct: 180 WGYESEAENNNIEVYISFLRKKLQYIE-ARAKITTIRGVGYKLEE 223


>gi|325521268|gb|EGD00144.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 206

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 124/206 (60%), Gaps = 2/206 (0%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L   ++ V V + G+ G+ L     FD ++LD+ L ++ GFEVL+ LR  K  TPV +L+
Sbjct: 3   LTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGFEVLKRLRAEK-QTPVLMLT 61

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAK 139
              +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+    + +++  D+ ++L  +
Sbjct: 62  AREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAPRSIRDILLVADMEIDLLKR 121

Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199
            V    +RI LT +E+ +++LL+ R+   LT+    + ++D   + +  ++D  I +LR 
Sbjct: 122 RVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDMNFDSDTNVVDAAIKRLRA 181

Query: 200 KLSNAAGGKNYIETVWGRGYVLRENA 225
           K+ NA   K  I T+ G GYVL + +
Sbjct: 182 KVDNAY-DKKLIHTIRGMGYVLEDRS 206


>gi|167578439|ref|ZP_02371313.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           TXDOH]
 gi|167616577|ref|ZP_02385208.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           Bt4]
 gi|257143082|ref|ZP_05591344.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
          Length = 223

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L  +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218


>gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +   LK   +   VTD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNTLLVDELAKQLKQAGYVTDVTDRAAEADYLIKETHYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R   I TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A++ R+ 
Sbjct: 61  QLLETWRNQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHALINRAH 120

Query: 121 GHAQSLIVTGDLS---VNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G   S   T +LS   V LD   ++V V   +  LT  E++++++  +     L+K    
Sbjct: 121 GKTNS--PTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKKLLSKAQLT 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 179 DKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 227

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 18/226 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A+A  +   L  E +NV V   G+  I+       D ++LDLGL D+ G EV
Sbjct: 4   VLLAEDDPAIAEPLARALSREGYNVVVQGTGQGAIDNASVA--DLVVLDLGLPDMDGLEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G 
Sbjct: 62  ARAIRGLGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGD 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
                  HAQ      D+ V++ A     QG R +HLT KE++++ +L     T + ++ 
Sbjct: 122 PTEAEELHAQ------DVKVDVAAHRA-FQGERELHLTTKEFELLRVLVQGAGTVVVRDA 174

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  ++        K +D+ +  LR+KL + A    YI TV G G+
Sbjct: 175 LMREVWGSEPIGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGLGF 220


>gi|293604304|ref|ZP_06686711.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817181|gb|EFF76255.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/238 (36%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +    +S   N Y  D   DG+          FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADGLS---RSLRHNGYAVDAVRDGLAADSALAAQAFDLLILDLGLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  AGLEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++H
Sbjct: 118 RGAGGGATMLKHGRLLFDQTGRVAIVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           L +  +E     I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL +
Sbjct: 178 LCEWGEEVSTNAIEVYVHRLRKKL-EPSGVK--IVTVRGLGYCLE---RDQGAAYLAS 229


>gi|119944977|ref|YP_942657.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119863581|gb|ABM03058.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 218

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  S+ + L    + V    LG       +   F AIILDL L D  G 
Sbjct: 1   MRILLVEDDVMLGESMVVSLIRHGYTVDWLQLGAAVEMTLRTENFTAIILDLTLPDADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R A    P+ IL+    I+D+V+GL  GADDY+ KPF  +EL+AR+R IVRR  
Sbjct: 61  DILSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A+S I    L ++L   TVE  G  I LT  E++++  L  +    L+KE     LY 
Sbjct: 121 GYAESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +      I+V+I  LRKK++N       I+ + G GY++ +
Sbjct: 181 WDEMASDNAIEVYIHNLRKKINN-----QLIKNIRGVGYIIEK 218


>gi|254524591|ref|ZP_05136646.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219722182|gb|EED40707.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 219

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD AL   +  +L+   + V+    G    E+ +  +  A I+DLGL  + G 
Sbjct: 1   MRILLAEDDAALVQRLVPLLEQAGYVVHTVADGRHAEEIGQVEDLQAAIVDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DK+ G  +GADDY++KPF  +ELV R+RA++RRS 
Sbjct: 61  SVIERWRGNGRSFPVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++++A   E+ G  + L+ +E++++        + ++++     +++
Sbjct: 121 GHASPRLQCGPLQLDVNAGRFELDGQALALSPQEFRVLSYFIHHSGSVISRDRLGEQVFE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G  +P+   +DV + ++R+KL     G + I TV G+G+ L E
Sbjct: 181 GGYDPDSNALDVLLGRVRRKL-----GTDLIHTVRGQGWRLAE 218


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ +E  K  E+D ++LD+ L  + GF+
Sbjct: 4   KILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 H----AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                AQS ++V G++ ++ + + V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G D P + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LIW-GYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQ 228


>gi|309800065|ref|ZP_07694260.1| transcriptional regulatory protein CiaR [Streptococcus infantis
           SK1302]
 gi|308116316|gb|EFO53797.1| transcriptional regulatory protein CiaR [Streptococcus infantis
           SK1302]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ISTPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGISTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL+VNL    V V    + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDLTVNLSTNEVRVNDTVVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL  +   +N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGSVFAEN-LQTLRSVGYILK 221


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V + + GE G+ +    +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 3/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +   L+ E++ V     GE    +    E+D +ILDL L  + GF
Sbjct: 1   MRILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K   P+ +L+G + +ED+VR L  GADD + KPF+  EL AR+RA++RR  
Sbjct: 61  GVLQQVRDHK-RCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ  +   DL ++   +TV   G RI LT KE+ ++E L       +T+ M + H+++
Sbjct: 120 SAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCE 231
            + +    ++DV++  LR+K+ +    K  I TV G GY +R E  +   C+
Sbjct: 180 LKFDTGTNVVDVYVNYLRRKVDSEFPTK-LIGTVRGVGYEIRPEGVEASVCQ 230


>gi|89902445|ref|YP_524916.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347182|gb|ABD71385.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L   ++  L+++ + V     G DG+   + Y  D  I+DLGL  + G 
Sbjct: 1   MRLLLIEDDAVLRLGLKRQLEADGYRVDQAGDGADGLFQAREYPLDLAIVDLGLPKVNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR    + P+ IL+   S +DKV+GL++GADDY+ KPF   EL AR++A++RRS 
Sbjct: 61  TVVQTLRAEGRTLPILILTARGSWQDKVQGLEAGADDYLVKPFEYPELAARVKALLRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++   ++  +    + LT  EY+++E L   +   + K+   ++LY 
Sbjct: 121 KATSDVLTLGALRIDFSGQSARLHDVPLQLTTFEYRVLEYLVRERARVVPKQELSDYLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ +  +++V I +LR+KL +  G    IET+ GRGY
Sbjct: 181 HDEDRDSNVLEVLIGRLRRKL-DPDGTLLPIETLRGRGY 218


>gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
 gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
          Length = 220

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  + + +++ L +  F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTD-GKTGMAALTSAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++V+ LQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LEVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L 
Sbjct: 120 -GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLS 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     +DV I  LR+KL     GK +I T+ G GY L
Sbjct: 179 SWDEEISSGALDVHIYNLRQKL-----GKQFIRTIHGVGYAL 215


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     G D ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 221


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+ I DD  +   +E +L      V   +      ++ +    D +I+D+ +    G ++
Sbjct: 488 IIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDL 547

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R        P+ +L+  +  E +    ++GADD+ISKP    EL+AR+ + + RSR
Sbjct: 548 CQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   +   L +E+++V     GE  ++     E+D +ILD+ +    G 
Sbjct: 1   MRILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R      PV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L V++D   V   G  I L+GKE+ ++  +   K   L++E    HL++
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+      K  I TV G GYVL+E 
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDEPFEEK-LIHTVRGAGYVLKEK 223


>gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator
           [Escherichia coli ETEC H10407]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A   TPV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221


>gi|260430186|ref|ZP_05784161.1| DNA-binding response regulator [Citreicella sp. SE45]
 gi|260419109|gb|EEX12364.1| DNA-binding response regulator [Citreicella sp. SE45]
          Length = 217

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +  ++   L  +  +V  +  G +   + +   FD ++LDLGL    G 
Sbjct: 1   MRILLIEDDAIVGDALVKSLGRDRADVVWSRDGLEAEAMLRGGGFDLVVLDLGLPGQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR     TPV +L+    +ED++RGL  GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  TLLRGLRGRGDVTPVLVLTARDGVEDRIRGLDHGADDYLLKPFDTGELLARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G L+V+L A TV + G  + L  KE++++  L+ R+   + K      LY 
Sbjct: 121 GRGEDRIELGQLTVDLQAHTVTLAGRVLTLPQKEFRLLVYLAERRGRVVPKPQLEQMLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  E   ++V++  LR+K+  A+     I T+ G GY++
Sbjct: 181 WDEGAESNTVEVYVSALRRKIGAAS-----IRTLRGVGYMI 216


>gi|209517913|ref|ZP_03266746.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501629|gb|EEA01652.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 231

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 13/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  LA  +  +++ E F +     GE    L     +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDDADLARWVMNLMQVEQFAIDWAQNGECAEALLGQQCYDAVLLDMRLPGIGGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVL  LR  + + PV +L+   S +DKV    +GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  EVLARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQA 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              RG +      G+L    D++   +Q  R+ L  +E+ ++E L L++  T++K   ++
Sbjct: 121 AGDRGQSTE---CGNLRYLFDSREFVLQDERLPLRRREHAILEALILKQGKTVSKATLMD 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            ++   +EP    ID++I +LRK L   A     I T+ G GY+LRE   +E CE
Sbjct: 178 KIFTLDEEPSADAIDIYIHRLRKHL---AASTAKIMTLRGLGYILRE---EEPCE 226


>gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 61  KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              AQ+ +  G+L + L  + V + G  I L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+++L   ++  L+ E F   +   GE+G+ +     FD I+LD+ L  + G+
Sbjct: 1   MKILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R +    PV +L+ + SIEDKVRG   GADDY+ KPF+  ELV RI++++RR++
Sbjct: 61  QVLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    ++  GDL +++  KT      +I L  KEYQ++E L L     + K     HL
Sbjct: 121 FGGAPSRVLRVGDLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRVVPKSELEEHL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  DE    +I   I  +RKK+ +    K  I+TV G GY
Sbjct: 181 WNEDDELWSDVIRSHIKNIRKKV-DGGRRKKLIKTVRGMGY 220


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +  ++  +LK+EN++      GE  +E      FD +ILDL L    GF 
Sbjct: 3   KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ ++  +   PV IL+      DK+ G   G DDY++KPF+  EL+ RI+A++RR R 
Sbjct: 63  VLKEIK-NREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +  I+  G ++VNL  + V   G  + LT KEY ++ELL    N   TKE  ++ L+
Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +  I+ V + +LR+K+         I+TVWG GY
Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGY 221


>gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
          Length = 240

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 19  MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTD-GQSGLNALIGAPYDAVVLDLTLPKLDG 77

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+  R      PV IL+   +++++++G+Q GADDY+ KPF   E+V R++A++RR 
Sbjct: 78  LEVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRR 137

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +  I  G++ ++   +   +    I LTG+EY+++EL  L K   L++      L 
Sbjct: 138 YGQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLS 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 198 NWDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 234


>gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 135/226 (59%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ +D+  L +++  +LK  N+ V     G D ++     ++D IILD+ +  + G 
Sbjct: 5   MKLLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDYDGIILDIMMPGMDGT 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   +STPV  L+  + ++D++RGL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 65  EVLKKIREKGLSTPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRRKA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q  +  G+L+++     +   GH +I L+G+E+QM+ELL       ++ + F++ ++
Sbjct: 125 DFSQPNLTCGNLTLDRAGYELSTPGHDKIRLSGREFQMMELLMTSPGRIISVDNFMDRIW 184

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            DG  E +V ++ V++  LRKKL+ +      I+   G GY + E 
Sbjct: 185 ADG--EADVNVVWVYVSNLRKKLA-SLDATCEIKASRGLGYSISET 227


>gi|124382081|ref|YP_001023940.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10229]
 gi|126445475|ref|YP_001062036.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei
           668]
 gi|126446503|ref|YP_001078685.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10247]
 gi|126457411|ref|YP_001074988.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106a]
 gi|217418642|ref|ZP_03450149.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576]
 gi|226195063|ref|ZP_03790654.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pakistan 9]
 gi|237510327|ref|ZP_04523042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238563076|ref|ZP_00439448.2| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242313060|ref|ZP_04812077.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106b]
 gi|251766834|ref|ZP_02265115.2| DNA-binding response regulator TctD [Burkholderia mallei PRL-20]
 gi|254183073|ref|ZP_04889665.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1655]
 gi|254200597|ref|ZP_04906962.1| DNA-binding response regulator TctD [Burkholderia mallei FMH]
 gi|254204618|ref|ZP_04910971.1| DNA-binding response regulator TctD [Burkholderia mallei JHU]
 gi|254264953|ref|ZP_04955818.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710a]
 gi|254300010|ref|ZP_04967456.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           406e]
 gi|124290101|gb|ABM99370.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10229]
 gi|126224966|gb|ABN88471.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei
           668]
 gi|126231179|gb|ABN94592.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106a]
 gi|126239357|gb|ABO02469.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC
           10247]
 gi|147748209|gb|EDK55284.1| DNA-binding response regulator TctD [Burkholderia mallei FMH]
 gi|147754204|gb|EDK61268.1| DNA-binding response regulator TctD [Burkholderia mallei JHU]
 gi|157809872|gb|EDO87042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           406e]
 gi|184213606|gb|EDU10649.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1655]
 gi|217397946|gb|EEC37961.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576]
 gi|225932868|gb|EEH28864.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           Pakistan 9]
 gi|235002532|gb|EEP51956.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           MSHR346]
 gi|238521412|gb|EEP84864.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
           4]
 gi|242136299|gb|EES22702.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1106b]
 gi|243064584|gb|EES46770.1| DNA-binding response regulator TctD [Burkholderia mallei PRL-20]
 gi|254215955|gb|EET05340.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710a]
          Length = 252

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 30  MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 90  DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 150 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 210 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 247


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E +     + G  G++L    ++D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 131/225 (58%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDA--IILDLGLTDIPG 59
           IL++ED+K +A  IEL L++E    Y T++  DGI  L KF E     +ILDL L  + G
Sbjct: 9   ILIVEDEKDIARFIELELQAEG---YRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+AR+RA +RR 
Sbjct: 66  IEVAKRIRKTS-NVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRV 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL +NL+ + V     RI L+ KE++++ELL+       ++      ++
Sbjct: 125 TPAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G  +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 185 PGY-QGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 227


>gi|307709217|ref|ZP_07645676.1| response regulator [Streptococcus mitis SK564]
 gi|307620163|gb|EFN99280.1| response regulator [Streptococcus mitis SK564]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD+ +NL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDILINLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222


>gi|307706360|ref|ZP_07643172.1| response regulator [Streptococcus mitis SK321]
 gi|307708503|ref|ZP_07644968.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC
           12261]
 gi|307615419|gb|EFN94627.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC
           12261]
 gi|307618278|gb|EFN97433.1| response regulator [Streptococcus mitis SK321]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 222


>gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus
           thiooxidans]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  +I + L+   + V  T  GE  ++     E+ AI+LDLGL  + G 
Sbjct: 8   MRILLVEDDRMIGEAISVALRDAAYAVDWTRDGETALQAITNQEYQAILLDLGLPKLDGC 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      P+ I+S   ++ D++ GL  GADDY+ KPF  +EL+AR+RAI+RR  
Sbjct: 68  TVLQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQG 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++ +G L ++L     ++    + L+ +E+ +++ L LR    L++      LY 
Sbjct: 128 GQRSPVLSSGSLQLDLSTHIAQLGEASVLLSRREFALLQALLLRPGAILSRAQLEERLYG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ID  I  LRKKL     G   I+ V G G+++
Sbjct: 188 WGEEIESNSIDFLIHALRKKL-----GAEVIKNVRGAGWMV 223


>gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047]
          Length = 218

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED   L  +I+  + +E   V +V  +      L   + +D ++LDL L D  G
Sbjct: 1   MRILLVEDTVGLGEAIQDQITAEGHAVDWVETISHAETSLHATH-YDLVLLDLMLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L  +R A  + PV IL+    I D+++GL +GADDY+ KPF+  EL ARI A+ RR 
Sbjct: 60  IELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSARIAAVSRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  G L ++L    +   G  I+LT +E+ + E    R  T ++K    +HLY
Sbjct: 120 AGNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISKSQLEDHLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E   I+V+I +LRKKL     G++ +ETV G GY
Sbjct: 180 AFGTEIESNTIEVYISRLRKKL-----GRDLLETVRGLGY 214


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  +      G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
 gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E +  +I+V + +LR+KL    G K  I+TV G GY+  E  +
Sbjct: 181 DDEERDPNVIEVLVGRLRRKLEGDNGFKP-IDTVRGLGYLFTERCR 225


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ E   V     GE+ IE+ +  E+D ++LD+ L    GFE
Sbjct: 3   KVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           V +A+R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+    R
Sbjct: 63  VCQAIREFS-EMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTR 121

Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RSR  AQ     I  G+L ++ D++ V +    I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 RSRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREEL 181

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LGYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 231


>gi|160896325|ref|YP_001561907.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361909|gb|ABX33522.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V +V +  E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  DE     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 181 EWGDEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKIA 223


>gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 635

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 2/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD + + +I   L  + + V   + GE G+EL + + +D I+LD+ L  +   
Sbjct: 1   MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDRI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  +  TP+ +L+  +   D V GL++GADDY+ KPF+  EL+ARI+A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N     V  QG  +HLT  EY ++EL         ++++ ++ ++ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
               P  + I   I  LR+KL      +N I+TV+G GY L E    E   +LE+
Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE--LQECLSFLES 233



 Score = 40.8 bits (94), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LI+DD      ++  L    FNV      +    + +    D +ILDL +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
            +A+R      S P+  LSG    E   + L  GAD Y+ K    EEL+
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618


>gi|146318749|ref|YP_001198461.1| response regulator [Streptococcus suis 05ZYH33]
 gi|146320952|ref|YP_001200663.1| response regulator [Streptococcus suis 98HAH33]
 gi|223932354|ref|ZP_03624357.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|253751848|ref|YP_003024989.1| response regulator protein [Streptococcus suis SC84]
 gi|253753671|ref|YP_003026812.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755449|ref|YP_003028589.1| response regulator protein [Streptococcus suis BM407]
 gi|145689555|gb|ABP90061.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           05ZYH33]
 gi|145691758|gb|ABP92263.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|223899035|gb|EEF65393.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|251816137|emb|CAZ51761.1| response regulator protein [Streptococcus suis SC84]
 gi|251817913|emb|CAZ55689.1| response regulator protein [Streptococcus suis BM407]
 gi|251819917|emb|CAR45990.1| response regulator protein [Streptococcus suis P1/7]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 3   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGVYEAETGVYDLILLDLMLPEKDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I +   S+EDK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 62  QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++V+L      V G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 122 KFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL     G+N ++T+   GY+L+
Sbjct: 182 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 222


>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 233

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  +E  +  + D +ILDL L  I G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  H
Sbjct: 64  CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVH 123

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              L    I+ G L ++L  + V  +G  + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPRLDSEQILVGGLRIDLAERLVSWRGEEVELSSGEYNLLVVLARNAGEVLSRDRILQQL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  ++AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDSAGEARKIKTVWGKGYLF 226


>gi|76817820|ref|YP_337428.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710b]
 gi|76582293|gb|ABA51767.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
           1710b]
          Length = 287

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 65  MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 124

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 125 DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 184

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 185 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 244

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 245 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 282


>gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL   I+A++RR+ 
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    L ++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGY 215


>gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 227

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S    GDLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221


>gi|322437589|ref|YP_004219679.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165482|gb|ADW71185.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++ED+  LA ++ E + +   F V   + GE  I L     +D IILDL L  + G
Sbjct: 1   MRVLIVEDELRLAENVAEALRQGPGFAVDHAEDGEAAIHLAANACYDLIILDLNLPKMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL  LR     TP  IL+  +  E  V  L +GADDY++KPF+  EL+AR +A++RRS
Sbjct: 61  PAVLHRLRATGDKTPTLILTARAERESIVALLNAGADDYLTKPFDLGELIARAKALIRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  G+L V+   +TV   G  I L+  EY+++E L  R    ++K   L H+Y
Sbjct: 121 TGVAAPSIRLGELEVDTLQQTVSRAGTLIPLSPMEYRILEYLIHRPRIIVSKRQLLEHMY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E    +I+  +  LR+KL + +G +  IET+ GRGY L
Sbjct: 181 DFNWEHHSNVIEAHLSNLRRKL-DPSGSEPVIETLRGRGYRL 221


>gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661]
 gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL +ED++  +  +   L    F V V+  G +G+     +++DA+ILD+ L  + G+
Sbjct: 1   MRILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  +R +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGIRASK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   + +   DL ++L A+ V   G+R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFDVKLLHTVRGMGYVL 221


>gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 226

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD+ LA  +   L++    V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIVEDDQVLADGLLRTLRASGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR   ++ PV IL+   S++++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  I L+ +E  ++ +L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+    GG   I TV G GY L
Sbjct: 181 EWSEEVSNNAIEVYIHRLRKKIE---GGPIRIATVRGLGYCL 219


>gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++    V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRASGAVVDHVASGSEADAALMTNNEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCL 219


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +   I   L    + V     G  G+E     ++D I+LD+ L ++ G 
Sbjct: 1   MRILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV +L+ + +++D+V+GL +GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  GDL ++   + V+     I L+ +E+ ++E L    N  L++     H++ 
Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + K+IDV+I  LR+K+ +  G  + I TV G GY +R
Sbjct: 181 FDFYGDYKVIDVYIGYLRRKI-DRHGASSMIHTVRGVGYSMR 221


>gi|114564455|ref|YP_751969.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335748|gb|ABI73130.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 129/231 (55%), Gaps = 20/231 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E  LK      Y+TD+ +  IE   L K  ++D +ILD+GL D 
Sbjct: 1   MKLLLVEDNPLLVAELEKQLKQAG---YITDVTDKAIEADYLMKETDYDCVILDIGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++   R   I+TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI+A++ 
Sbjct: 58  NGLSLVTKWRERGINTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIH 117

Query: 118 RSRGHAQS----LIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R+ G   S    L   G   VNLD   + V V  H   LT  E++++++  +     L+K
Sbjct: 118 RAHGRVNSSSKQLCYAG---VNLDENEQKVTVGEHIYELTSMEFRLLKIFLMSPKKLLSK 174

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 175 QQLTDKLYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I +GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EHEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228


>gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 219

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+    N +V +L  DGI+         +DAI+LDLGL  +
Sbjct: 1   MKILVVEDEIQLGEQIVAGLEQ---NSWVAELSTDGIDALYRATSEPWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   +  P+ ILS  S +  +V GL +GADDY++KPF   ELVAR+RA +R
Sbjct: 58  DGITVLKGIREENVDCPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+   +I  G L ++  +  V   G  + LT  E++++  L   ++  +++   + H
Sbjct: 118 RSTGNTSPVIQAGPLELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +Y    + +   I+VFI ++R+K+     G + I+TV G GY  R NAK
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKV-----GTDVIKTVRGLGY--RINAK 219


>gi|170739881|ref|YP_001768536.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168194155|gb|ACA16102.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   L S+  +        D         +D ++LDL L D  G 
Sbjct: 1   MRILLIEDDPVLGEAVRDHLASDGHSADRVATLADAAAAITAAVYDLVLLDLMLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR  R     TPV IL+    I D++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 61  DFLRQRRTQGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARVGAVGRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  GDL ++L A++V   G  + LT +E+ + E L  R +  L+K      LY 
Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHRAGKPVPLTAREWSLFEALVQRPHALLSKAQLEERLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E E   I+V++ +LRKK+     G   IETV G GY L   A+
Sbjct: 181 FDAEVESNTIEVYVGRLRKKI-----GAEAIETVRGMGYRLGAPAR 221


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L  E +NV +   G   +E+ +    D ++LDL L  I G EV
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
            R LR A    P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIR  + RR R 
Sbjct: 64  ARRLRAAS-DVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L+++L A  V +   R+ LT KEY ++EL        +T+++  + ++  
Sbjct: 123 DTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  II+V++  LR+KL  A G    I TV G GY+LRE 
Sbjct: 183 NFGGESNIIEVYVRYLRQKL-EARGEPRLIHTVRGVGYILREE 224


>gi|221231598|ref|YP_002510750.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|220674058|emb|CAR68571.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
          Length = 224

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLIEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 222


>gi|302023870|ref|ZP_07249081.1| response regulator protein [Streptococcus suis 05HAS68]
 gi|330832913|ref|YP_004401738.1| response regulator [Streptococcus suis ST3]
 gi|319758204|gb|ADV70146.1| response regulator [Streptococcus suis JS14]
 gi|329307136|gb|AEB81552.1| response regulator [Streptococcus suis ST3]
          Length = 223

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GEEGVYEAETGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I +   S+EDK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKGVTTPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++V+L      V G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KFNENTLTFGDVTVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL     G+N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFGEN-LQTLRSVGYILK 221


>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+  +   ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I TV G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFAPK-LIHTVRGMGYLM 221


>gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M++L++ED+    H+I+  L+   F V   D+  DG+    L     + AII DL L  +
Sbjct: 1   MKLLVVEDEPKTLHAIQQGLEESQFEV---DIAYDGLLAKRLALKNTYAAIITDLILPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E+ R LR   +STP+ +L+ +   ED+++G  +GAD Y++KPF   EL+AR+R++ +
Sbjct: 58  NGYELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTK 117

Query: 118 RSR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R         ++  G + +NLDAKTV   G  I LT +E+ ++E L   +   L+K    
Sbjct: 118 RGTQVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMRNQGRVLSKPAIA 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++D   +    +++V+I  LRKK+      K  I T +G GY+ +E
Sbjct: 178 EHVWDLNFDTGTNVVEVYINYLRKKIDKGF-DKKLIHTHFGMGYMFKE 224


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  136 bits (343), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A   +  L+   F V + D GE G++     +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R AK +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREAK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SRIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 220

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 123/219 (56%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA  +   L +  + V   D G D   +      DA++LDLGL  + G 
Sbjct: 1   MHILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPLMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A  + PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++  A  V V G  ++LT  E ++++ L   +   +++     H+Y 
Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VFI +LRKKL         IETV G GY
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLP-----AGMIETVRGLGY 214


>gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
 gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L IEDD   A  I   L S    V +V D G +G+      ++D I LD  L  + G 
Sbjct: 3   RVLTIEDDAITAQEIVAELSSHGLQVDWVAD-GREGLVRAASGDYDVITLDRMLPGLDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   ++TPV +LS +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR +
Sbjct: 62  AIVTTLRRIGVATPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQ 121

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  ++++  GDL ++L A+T    G  + L   E++++E L       LT+ M    +
Sbjct: 122 QPASNETVLRVGDLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +P   +IDV I +LR+KL + A   + I TV G GYVL E 
Sbjct: 182 WGYHFDPGTNLIDVHIGRLRRKL-DQADAPSLIRTVRGSGYVLSET 226


>gi|21673035|ref|NP_661100.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646102|gb|AAM71442.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 220

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +A ++ + LK   + V +V D GE   +  ++ E  A++LDLGL    G
Sbjct: 1   MRVLLVEDDPMIAEAVSVALKDAAYAVDWVRD-GEKAADALRYGEHQAVLLDLGLPGRGG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL ALR    S PV I++    + +++ GL SGADDY+ KPF+ +EL+AR+RA++RR 
Sbjct: 60  LEVLAALREGGSSIPVIIITARDGLGERIAGLDSGADDYLVKPFDLDELLARLRAVIRRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  LI  G ++++    T      R  L+ +E+ ++  L L+    L++      +Y
Sbjct: 120 GGQASGLIGNGQITLDPATHTAFCGEERAVLSSREFAVLHALLLQPGRILSRSALEERVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +E E   ID  I +LR+KL     G   I+ + G G+++ + 
Sbjct: 180 GWDEEVESNAIDYLIHQLRRKL-----GATSIKNIRGAGWMVEKQ 219


>gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 222

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD++L+ ++   L+SE + V         +      EF  +ILDLGL D+ G 
Sbjct: 1   MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR     K S P  IL+   S+ DK+ GL SGADDY++KPF+ +EL+AR+R + RR  
Sbjct: 61  EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SLI  G++ ++L    V    +   L+ +E+ +++ L        +K      LY+
Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE     I+V I  LRKKL      K++I+T+ G GY
Sbjct: 181 WGDELSSNAIEVHIHNLRKKLP-----KDFIKTIRGVGY 214


>gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 270

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 129/228 (56%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           R L+IEDD   A  I   L+ +  +V V   G  GI       +D IILD  L +   G 
Sbjct: 39  RYLIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLPNGFDGL 98

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 99  QILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 158

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL VNL +++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 159 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 218

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+ +       I TV G GY L +  +D
Sbjct: 219 DYRFDPQTNVIDVHISRLRSKV-DKGFATPLIHTVRGVGYSLSDQPQD 265


>gi|78067449|ref|YP_370218.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968194|gb|ABB09574.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 273

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  +PG 
Sbjct: 32  MRILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQTFDLLILDLGLPKMPGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 92  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 151

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 152 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 212 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 249


>gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator
           [Acidiphilium cryptum JF-5]
 gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L+   F   V   GE G+E  +   +DAIILD+ L    GF
Sbjct: 1   MRVLIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRRNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R     T V +L+    + D+V GL++GADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  EILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L        G  + LT KE++++ LL+ R    +++ +    ++D
Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV + +LR KL +    +  I TV G GYVL +
Sbjct: 181 INFDSGTNVVDVHMYRLRAKLDDPF-SRRLIHTVRGVGYVLED 222


>gi|296273138|ref|YP_003655769.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097312|gb|ADG93262.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 219

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 131/224 (58%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+ED+K LA  I   L+      Y+ DL   GE+G+   K   +D +ILDLGL  +
Sbjct: 1   MKILLLEDNKTLAKGIFNKLEQHG---YIIDLFYDGEEGLYSLKTSNYDLLILDLGLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ LR ++   P+ I+S    ++ ++ GL SGADDY+ KPF+ +E++AR++A++R
Sbjct: 58  DGIDIIKDLRNSQKDIPILIISARDKLDQRILGLDSGADDYLCKPFDLDEVIARVQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+     LI   DL  N  +KTV      I L+ +E  + E + L  N  ++KE  ++H
Sbjct: 118 RSKNQLSKLIKYKDLEYNSLSKTVTKDDVVIELSKREINIFEHMLLNLNNVVSKENIVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    DE     ++ ++ +LRKKL ++      ++TV G GY+L
Sbjct: 178 ITSFDDEFNPTAVETYVSRLRKKLGDSIN----LKTVRGLGYIL 217


>gi|83717906|ref|YP_439918.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
 gi|83651731|gb|ABC35795.1| DNA-binding response regulator TctD [Burkholderia thailandensis
           E264]
          Length = 267

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 45  MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 105 EVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 164

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L  +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 165 GHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 225 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 262


>gi|1834375|emb|CAA70859.1| RagA [Bradyrhizobium japonicum]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD   A +I   L    F V     G DG++  +    DA+I+D  L  + G  
Sbjct: 3   RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR  ++ TPV +LS + +++D+VRGL+ G DDY++KPF   ELVARI A++RR   
Sbjct: 63  VIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPTD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G L ++L  +T       + L  +E++++E +  R +  LT+ M L  +++ 
Sbjct: 123 SRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWNY 182

Query: 182 RDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  P    +IDV + +LR K+ +  G    I  V G G+VLR
Sbjct: 183 KFVPATTNLIDVHMGRLRHKV-DGPGEVQLIHNVRGSGFVLR 223


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 69  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 128

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  +L+  GDL ++ DA  V   G +I L+  E++++  L +     ++K   L+H++
Sbjct: 129 GEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 189 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 231


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  + L L  E F   + + GE+ ++    +  D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR   
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +  +   DL +NL   +V   GH+I +  KE +++  L+   N   T+E  L
Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPNWA--LSTVWGIGY 226


>gi|313679455|ref|YP_004057194.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152170|gb|ADR36021.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 220

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IP 58
           MRILL+ED+ +L   +   ++S  ++V   D  E   E     E D +ILD+ L +    
Sbjct: 1   MRILLVEDEASLREPMAAYVRSMGYDVDEADSIEAAREALYDAEPDLVILDVMLPEGVDA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE    LR A    PV  ++   ++ED+VRGL  G DDY++KPF+ EEL AR+RA++RR
Sbjct: 61  GFEFASELREAGFDGPVLFITARDAVEDRVRGLDLGGDDYLTKPFSLEELAARVRALLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S    G L V+  A+ V  QG  + L+G+E+ +IEL SL  +   + E  L  L
Sbjct: 121 QGSVRRSFFERGPLRVDYAARKVHWQGREVALSGREFALIELFSLHPDRVYSAEELLERL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G D   +KI+ V++ +LR KL     G   ++TV G GY L
Sbjct: 181 FPGTDS-GLKIVRVYVHRLRTKL-----GPEVVQTVAG-GYRL 216


>gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V     GED + L    ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDQRIASDVSRTLEASGYVVETVANGEDALFLGDTEDYGAIILDLGLPGMEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRTNGRHMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S++  G+++++     V  +G  I L+  EY+++  L   +   ++ +    ++Y 
Sbjct: 121 GHGSSIMSAGEITLDERQMKVTRRGVPITLSPLEYRLVAHLLRNRGRVVSPQEIDENVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   ++V + ++RKKL     G + IET  G GY++ E
Sbjct: 181 HGEEHDSNTLEVLVGRVRKKL-----GADAIETRRGFGYLMPE 218


>gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V  TD G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+L
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223


>gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 228

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL EDD  LA  +   L+      Y TD   +G+E        +FD +ILDLGL  +
Sbjct: 1   MRILLAEDDSVLADGLTRSLRQSG---YATDCVHNGVEADLALSTQDFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR      PV IL+   SIE +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGVGGGPTVVRHGPLSYDQVGRIAYINEQMLDLSARELGLLEVLLQRTGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEL---GGVRIATVRGLGYCL 218


>gi|312959649|ref|ZP_07774166.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286366|gb|EFQ64930.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED     H +   L    F   +   G  G  L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGHYLRQGLAEAGFTTELVADGTSGQHLALTGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + VE  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STPQDTALQLADLRLDLIRRRVERDGQRIDLTAKEFALLELLLRRQGEVLPKTLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  II+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEE 223


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 121/206 (58%), Gaps = 4/206 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +A  +   L +E ++V     GEDG+EL     +D ++LDL L  I G 
Sbjct: 1   MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  K  TP+ +L+ +   E+KV GL+ GADDY+ KPF+ +ELVARI A+ RR+ 
Sbjct: 61  GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+    + ++I  G ++ +  +  V V+   I LT KE  +++LL       L++E  LN
Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLS 202
            ++    +P   ++DV++ +LR+KL 
Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLG 206


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 122/222 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   L+ +++ V +   GE G +  + + +  I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + LR +   TPV +L+   +  DKV GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS++ +   V      +HLT KEY ++ELL        ++   L  L+ 
Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P  + + V I  LRKKL  A    + I+TV+G GY L+
Sbjct: 181 WDDPPGEEAVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRLK 222


>gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 219

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R    L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   + +  +IDV I +LR K+ +A   K  I TV G GY
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPK-LIHTVRGMGY 219


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF
Sbjct: 17  VRVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGF 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR+ 
Sbjct: 77  GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA- 135

Query: 121 GHA---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           GH+   QS  VT  DL ++ D + V   G  + L+  E+ ++    +   T L+K   L+
Sbjct: 136 GHSDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           H+++     EV +++ ++  LR+K+         I T+ G GYV+RE
Sbjct: 196 HVWNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 240


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|145224468|ref|YP_001135146.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145216954|gb|ABP46358.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 17/231 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+  V D G D I L + ++ D +ILDLGL  I G E
Sbjct: 19  RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R+LR    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 137

Query: 121 ------GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 G  + +      G LS+++ A+ V +    I LT  E+ +++ LS R    L++
Sbjct: 138 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 197

Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  +   RDEP V   +++DV I  LR+KL + A    YI TV G GY
Sbjct: 198 RQLLEII---RDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 245


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   L+   F V   D GEDG+ + +  E D +ILD+ L  I GFE
Sbjct: 7   RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR      PV +L+      D+V G + GADDY++KPF+  EL  R++AI+RR+R 
Sbjct: 67  VLRALR-RHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A    Q  +V G L++N  +  V   G R+ LT  E+Q++ +L+       T++  ++ 
Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +       +V+ +DV I  LR KL         IETV G GY
Sbjct: 186 VMGPDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGY 227


>gi|332361852|gb|EGJ39655.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + + D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKDGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  ++  +L++E++ V + TD G+         ++D ++LDLGL    G
Sbjct: 5   MRLLLVEDDTMIGEAVRDLLRAEHYAVDWATD-GDMADAALATQQYDLVLLDLGLPRRDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR+LR  K  TPV I +    +  +V GL +GADDY+ KP++  EL+ARIRA++RR+
Sbjct: 64  LAVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRRA 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +     +++N   +   VQG  + L+ +E+ ++E L  R    L+++   + LY
Sbjct: 124 SGRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIEDKLY 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              DE     ++V++  LRKKL     G + +  V G GY++
Sbjct: 184 GWGDEVSSNAVEVYVHGLRKKL-----GAHIVLNVRGLGYMV 220


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F+VY  D G   ++L +    DA+ILD+ +  + GF 
Sbjct: 22  KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   I  P   L+    ++DK+ GL  GADDY++KPF+ EE+VAR+R I+RR   
Sbjct: 82  VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    +S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+ N  G K  + T+ G GYVLRE
Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKIDN--GEKRLLHTLRGVGYVLRE 245


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|264680102|ref|YP_003280011.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262210617|gb|ACY34715.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 209

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIPGFEVLRALRV 68
           +  ++  +L+ E    YV D  +DG +       +++D ++LDLGL  + G +VLR LR 
Sbjct: 2   IGQAVLALLRREG---YVVDWVQDGAQADTALYGHQYDLVLLDLGLPKLDGLQVLRQLRA 58

Query: 69  AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV 128
            K +TPV + +   ++ D++ GL +GADDY+ KP++ +EL+ARIRA+ RR+ GH  ++  
Sbjct: 59  RKDATPVLVATARDAVHDRIAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYE 118

Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188
            G + +N + +   V G  + L+G+E+ +++ L  R   TL+++   + LY   DE    
Sbjct: 119 HGGVMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDEVSSN 178

Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++V+I  LRKKL  AA     +  V G GY++
Sbjct: 179 AVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 206


>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 228

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      +   LK  +F V +   G DG+      E D IILD+ L  + G+
Sbjct: 1   MKILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR      PV  L+    +ED+++GL+ GADDY+ KPF+  EL+AR+R I+RR +
Sbjct: 61  EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A SL V  DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + +
Sbjct: 121 SGVEATSLKV-ADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +I+V + +LR K+ +A   K  ++TV G GYVL
Sbjct: 180 WDMNFDSDTNVIEVAVRRLRSKIDDAFEPK-LLQTVRGMGYVL 221


>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD  +  S+E  L+   F V     G + +        DAI+LD+ +  + G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
            ALR      PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A
Sbjct: 61  TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120

Query: 124 QS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            S    I  G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++ 
Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DVFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 181 YDFAADTNVVDVFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 221


>gi|226357259|ref|YP_002786999.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226319249|gb|ACO47245.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 220

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A     +L+   + V     G +G+E     E+  I+LD+ L  + GF
Sbjct: 1   MRLLLVEDDPRIAQPTTGVLREAGYAVTWAQTGPEGLEAAMLGEYPLIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   + + +  L+    + D++ GL  G D Y+ KPF   EL+A +RA+ RR R
Sbjct: 61  EVARELRAGGVDSAILFLTARGELADRIEGLDLGGDAYLVKPFAMPELLATLRALSRRER 120

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     +   +    LD  A+TV   G  I +TG+EY +IE L+L      T+E  L+ +
Sbjct: 121 GQGAPRVTFANGRGTLDTVARTVGWDGQEISVTGREYALIEALALAPERWFTREELLDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E +I+DV++  +R+KL+  A     + +  GRGY
Sbjct: 181 WGPEFGGEARIVDVYVRYVRRKLAPEA-----VASERGRGY 216


>gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL +GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIR-QRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GAD+YI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076603|gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   L+  +   ++  +  V     G D   L    ++  +ILDL L  + G 
Sbjct: 1   MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R     TPV IL+    + D+V GL  GADDY++KPF  EEL AR++A++RRS+
Sbjct: 61  EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G LS +  ++T    G  + LT +E+ ++E L +R   T+ KE     ++ 
Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D   +  I+++I +LRKKL +   G+  I T+ G GY+L+
Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222


>gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 237

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++  + K  N+ + V   G  G E+ +   +D IILD  L    G 
Sbjct: 1   MRLLLVEDEKRLADALAYIFKKNNYGIDVAYDGITGQEMAETGIYDLIILDRMLPKKEGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ LR   I TPV +L+   ++ED+V GL +GADDY+ KPF  EEL+ARIRA+ RR S
Sbjct: 61  SVLKHLRSIGIKTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARRQS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G L+++     +     ++ LT KE Q++EL        +TKE  L+ ++
Sbjct: 121 ENFHSEKIRVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E E+  ++++I  LRKK+      K  +ETV G GY L+E
Sbjct: 181 GLDSEVELNNVEIYIHYLRKKIV-PEKSKVRLETVRGVGYCLKE 223


>gi|317053265|ref|YP_004119032.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316953004|gb|ADU72476.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 230

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 135/230 (58%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLRRALGESGFTVDVSANGAEGLHFALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  +R +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRSSK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   + +   DL V+L ++ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 ADGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +++V I +LR K+      +  + TV G GYVL     D+
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKVDTPFAVR-LLHTVRGMGYVLEVRPGDQ 228


>gi|134279196|ref|ZP_01765909.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305]
 gi|134249615|gb|EBA49696.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305]
          Length = 252

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 30  MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 90  DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   ++  +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 150 GHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +++++ +LRKKL    G    I T+ G GY+L
Sbjct: 210 LDESVNADAVEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 247


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 63  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A   +  L+   F V + + G+ G+      EFD IILDL L ++ GF+
Sbjct: 3   RILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H   +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
           [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD  +  S+E  L+   F V     G + +        DAI+LD+ +  + G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
            ALR      PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A
Sbjct: 61  TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120

Query: 124 QS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            S    I  G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++ 
Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DVFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 181 YDFAADTNVVDVFIGYLRRKL-EAHGGPRLLHTVRGVGFVLR 221


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255


>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 871

 Score =  136 bits (342), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGFEV 62
           +EDD+ALA +IE +L S +   YV DL  DGIE   + + + +D I++D  L  + G ++
Sbjct: 1   MEDDRALAGAIEQLLLSHH---YVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQL 57

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    STP+ +L+   +  D+V GL +GADDY+ KPF  EEL+ARIRA++RRS G 
Sbjct: 58  CQQLRNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGI 117

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  GDL ++  +  V      I LT KEY ++EL         + +  L+ ++   
Sbjct: 118 VSPVLQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFE 177

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D P V  +   I  LR+KL    G  + I TV+G GY LR  A
Sbjct: 178 DTPTVASVRTHIKGLRQKLRQ-VGLSDVISTVYGLGYRLRTAA 219



 Score = 47.4 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD ++   ++ +L+   F + +        +  +  E D ++LD+ +  + GF++
Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R        P+  +S  +  +        GADDYI KP    ELVAR+   + RSR
Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690


>gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +     ++N        G++G+ L +   +D I+LD  L  + G 
Sbjct: 1   MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR +  STPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R+  + +R++
Sbjct: 61  TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A + +V G L + L  + V +  H + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +IDV I KLR+K     G    IETV G GY L
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEE-IGFPEMIETVRGAGYRL 221


>gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 270

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V  TD G DG+       +DAI LD  L    G 
Sbjct: 47  MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGRDGMMRAMSASYDAITLDRMLPGADGL 106

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 107 AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 166

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 167 ASGVPQQTLLKVGVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 226

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+L
Sbjct: 227 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 269


>gi|332671031|ref|YP_004454039.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340069|gb|AEE46652.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 230

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +
Sbjct: 3   QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGASTA--DLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172
                   HAQ++ V  D++ +        QG R +HLT KE+ ++ +L     T + +E
Sbjct: 121 DPGDEDELHAQNVRV--DVAAHR-----AFQGDRELHLTAKEFDLLRVLVAAAGTVVARE 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  ++        K +D+ +  LR+KL + AG   Y+ TV G G+     A
Sbjct: 174 TLMREVWGSDPTGSTKTLDMHVSWLRRKLGDDAGAPRYVTTVRGMGFRFETGA 226


>gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
          Length = 218

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   LK E + V     G   I       F  +ILDLGL    G 
Sbjct: 1   MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K  TPV + +   ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS 
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G L++N   + V   G  + L+ KEY ++  L+ R    L++      LY+
Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    I+V I  LRKKLS     ++ I+TV G GYVL
Sbjct: 181 YESLIGSNAIEVHIHHLRKKLS-----EDSIKTVRGVGYVL 216


>gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L+  ++L L    + V     GE+   L +   +DAIILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++TPV IL+   +  +KV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  L + +   +++   + HLYD
Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+     G + IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRVRKKI-----GADRIETVRGLGYRL 216


>gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
          Length = 227

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   LK E + V     G   I       F  +ILDLGL    G 
Sbjct: 10  MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K  TPV + +   ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS 
Sbjct: 70  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G L++N   + V   G  + L+ KEY ++  L+ R    L++      LY+
Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    I+V I  LRKKLS     ++ I+TV G GYVL
Sbjct: 190 YESLIGSNAIEVHIHHLRKKLS-----EDSIKTVRGVGYVL 225


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++     ++L L+ E F V     GE+G+E  +   +D +ILD+ L  + GF 
Sbjct: 3   RLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      D++ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  GDL +N+  + V  +G +I LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+KL +      YI T WG GY ++
Sbjct: 182 WGVDFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYMK 225


>gi|226229248|ref|YP_002763354.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092439|dbj|BAH40884.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  LA  I   L+ E++ V   +LG+D I       +DAI+LD+ L DI GF
Sbjct: 1   MRLLVVEDDPKLARLIARGLREESYAVDTCELGKDAIAQAAVNSYDAIVLDVMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR   I TPV +L+   ++ D++ GL SGADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  TVVQTLRTRDIRTPVLMLTSRDAVADRIVGLDSGADDYLVKPFDFGELLARLRALLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L +  V   G  I LT KEY ++ELL+      L++   ++H++D
Sbjct: 121 SLQAMQVRVADLEIDLQSHAVSRGGTPISLTAKEYALLELLARNVGRVLSRSDIVSHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    ++V++ +LR K+ +  G    I T  G GY+L +
Sbjct: 181 DNHDPFTNAVEVYVNRLRGKI-DRDGHAPLIHTRRGAGYILTD 222


>gi|315444804|ref|YP_004077683.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315263107|gb|ADT99848.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 128/231 (55%), Gaps = 17/231 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+  V D G D I L + ++ D +ILDLGL  I G E
Sbjct: 16  RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R+LR    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 134

Query: 121 ------GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 G  + +      G LS+++ A+ V +    I LT  E+ +++ LS R    L++
Sbjct: 135 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  +   RDEP V   +++DV I  LR+KL + A    YI TV G GY
Sbjct: 195 RQLLEII---RDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 242


>gi|24379561|ref|NP_721516.1| putative response regulator CiaR [Streptococcus mutans UA159]
 gi|290580438|ref|YP_003484830.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377506|gb|AAN58822.1|AE014950_5 putative response regulator CiaR [Streptococcus mutans UA159]
 gi|254997337|dbj|BAH87938.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKLLLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++    ++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G+L+V+    T  V G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KFNENNLTYGELTVDTATNTTMVNGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL +   GKN ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKDTTFGKN-LQTLRSVGYILKD 222


>gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV  L+    IED+VRGL+ GADDY+ KPF   E +AR+R ++RR R
Sbjct: 61  AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    + + +L ++L  + V   G RI LT KE+ ++ELL  RK   L + +  + ++D
Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRVKVDDPFEPK-LIRTVRGMGYVL 220


>gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A   TPV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221


>gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V     GED   L    ++ A+ILDLGL  + G 
Sbjct: 1   MRVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAWFLGDTEDYGAVILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV +L+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S++  G+++++     V  +G  I L+  EY++I  L   +   ++++    ++Y 
Sbjct: 121 GHGSSVMTAGEITLDERQMKVTRRGVPIALSPLEYRLIAHLLRNRGRVVSQQELDENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   ++V + ++RKKL     G + IET  G GY++ E
Sbjct: 181 HGEEHDSNTLEVLVGRVRKKL-----GADVIETRRGFGYLMPE 218


>gi|289167698|ref|YP_003445967.1| response regulator [Streptococcus mitis B6]
 gi|288907265|emb|CBJ22100.1| response regulator [Streptococcus mitis B6]
          Length = 224

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LKTLRSVGYILKD 222


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E++ V     G       +   +D I+LDLGL    G 
Sbjct: 1   MRILLVEDDVMIGESVLDCLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV I +   ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS 
Sbjct: 61  GLLRDLRGRKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     ++++  A    V G  + LT +E+ ++E L  R     ++      LY 
Sbjct: 121 GRAEPVFEHEGITIDPQAHAAMVDGTPVALTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D      ++V+I  LRKKL     G N I+ V G GYV+
Sbjct: 181 WKDSVSSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216


>gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L  ED+  +A  +++ LK + F V   D G+   E     E+D I+LD+ +    G 
Sbjct: 1   MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    +TPV +L+    ++D+++GL  GADDYI+KPF  EEL+ARI A+VRRS 
Sbjct: 61  FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR------------IHLTGKEYQMIELLSLRKNTT 168
           G   +L+  G   ++   +TV  Q               + LT +E+ ++E L       
Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            T+   L H++     P   ++DV I +LRKK+ +  G + +IE+V G GY  R+
Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKI-DMKGNERWIESVRGVGYRFRQ 234


>gi|190575791|ref|YP_001973636.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013713|emb|CAQ47348.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLNGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I++++ +LRKKL   AG    I TV G GY+L
Sbjct: 181 FDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLL 218


>gi|307151276|ref|YP_003886660.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981504|gb|ADN13385.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 801

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 132/241 (54%), Gaps = 11/241 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK     ++  L    + V +   GE G+EL   + +D I+LDL L  + G 
Sbjct: 1   MKILVVEDDKFTIEFLQTTLTVSGYTVDLASDGESGLELATLWNYDLILLDLQLPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR  K +TP+ IL+  S     ++GL +GADDY+ KP + + L+A+IR++VRRS 
Sbjct: 61  KICRQLRALKNTTPILILTVESENNKIIQGLDAGADDYLIKPCDPKYLIAKIRSLVRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  SL+  GDL ++  +  V  Q   + L  +EY++++L     +   ++   L+ L+ 
Sbjct: 121 GY-DSLLSWGDLCLDPVSTQVTYQQQPLVLRRQEYKLLKLFLRNPHRVFSRSNILDLLWS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----------ENAKDETC 230
             D P    +   I  LR KL ++   ++ IET++G GY L+          + A+D  C
Sbjct: 180 AEDFPSENAVTNLIKDLRNKLKDSGMTEDCIETLYGLGYRLKARPDKLLSKNQAARDNKC 239

Query: 231 E 231
           E
Sbjct: 240 E 240



 Score = 51.6 bits (122), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 14/130 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGLTD 56
           +++++DD  +  +++ +L    + + +T L E       F+E       D ++LD+ +  
Sbjct: 493 VIIVDDDPTMLTALKNLLHP--WGLKITGLTEPS----HFWEVVTQTHPDLLLLDIEMPT 546

Query: 57  IPGFEVLRALRV-AKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G E+ R +R  A  S  P+ +++G + IE   +  ++GADD I KP    ELVAR+  
Sbjct: 547 FNGIELCRVVRQDANYSDLPILVVTGHTEIEYIQQAFEAGADDLIRKPIVPPELVARVLG 606

Query: 115 IVRRSRGHAQ 124
            + RSR   Q
Sbjct: 607 RLERSRLRQQ 616


>gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 219

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L+   F V     G          ++  ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKASLALDTTQYALVVLDLGLPRVSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  ELVAR RA++RR++
Sbjct: 61  ELLKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI   +L+VN  A+TV++   R+ LT +E+ ++  L        ++      LY 
Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++E E   I+V +  LRKKL     G N I+TV   GYV+
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GANLIKTVRNIGYVM 216


>gi|53721734|ref|YP_110719.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52212148|emb|CAH38165.1| response regulator protein [Burkholderia pseudomallei K96243]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA S+   L S  F V     GE    +    ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  DVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L+ +   +   +    + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEHGRVECGPLAFDSVDRIFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRKKLE---GSGVAIVTLRGLGYLL 218


>gi|260778334|ref|ZP_05887227.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260606347|gb|EEX32632.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   +     G DG+       +D I+LD+ L    GF
Sbjct: 1   MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S++++V+GLQSGADDY+ KPF   EL+AR +++ RR +
Sbjct: 61  EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120

Query: 121 GH-AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + AQS  ++  +LS++L   ++E  G  I L  +E+ +I+L+     T ++K   L  +
Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  + +P+  ++DV +C+LR K+ +       I T+ G GYVL+  
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKV-DKGFDTPLIHTLRGVGYVLKSQ 225


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  I     +E + ++LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-TKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q +       +   DL +N+   +V+  G R+ +  KE +++  L+   N   T+E  
Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      + + +DV I +LR+KLS+    +  + T+WG GY
Sbjct: 185 LDQIWGYEYIGDTRTVDVHIKRLREKLSDHEKWR--LATIWGIGY 227


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L  E + V +   G   +++ +    D ++LDL L  I G EV
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
            R LR A    P+ +L+   +I D+V GL++GADDY+ KPF  EEL+ARIR  + RR R 
Sbjct: 64  ARRLRAAS-DVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++  G L+++L A  V +   R+ LT KEY ++EL        LT+++  + ++  
Sbjct: 123 DAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  II+V++  LR+KL  A G    I TV G GY+LRE 
Sbjct: 183 NFGGESNIIEVYVRYLRQKL-EAHGEPRLIHTVRGVGYILREE 224


>gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224


>gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL EDD+++A ++   L  +   V V   GE    L +   +D I+LD+ L  + G 
Sbjct: 1   MKVLLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+G+ +  DKV GL +GADDY+ KP +  EL ARIRA++RR  
Sbjct: 61  SLCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY ++EL         ++   ++HL+ 
Sbjct: 121 AALPPVLEWGPLRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRGGRRVYSRRAIVDHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + PE   +   +  LR KL       + IETV+G GY L+  A
Sbjct: 181 FEEPPEEDTVKAHVKGLRHKLRAVGAPADLIETVYGLGYRLKPQA 225



 Score = 38.5 bits (88), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 43  YEFDAIILDLGLTDIPGFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100
           +  D ++LD+ +  + G E+ R +R        PV  LS  +  E   R    GADD+++
Sbjct: 530 FRPDLLVLDVEMPHLSGIELCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVA 589

Query: 101 KPFNKEELVARIRAIVRRSR 120
           KP +   L  RI   + R R
Sbjct: 590 KPVSGPNLAMRILNRLERRR 609


>gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V +V +  E    L    EFD +ILDLGL  + G
Sbjct: 61  MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHG 120

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 121 LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 180

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 181 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 240

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  DE     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 241 EWGDEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKIA 283


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           MR+L+ +DD +L   +  +L SE    Y  D   +GIE + K Y+  FD +ILD+ +  I
Sbjct: 2   MRVLIADDDTSLLEQLREILASER---YTVDTASNGIEAMDKLYDAVFDLVILDVMMPHI 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R   I+ PV +L+    +EDKV+GL  GADDY++KPF+ +EL+AR+RA++R
Sbjct: 59  DGLSLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G   +++    L ++  ++ V   G  I LT KE+ ++E L   KN  +++     H
Sbjct: 119 RSEGRHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEH 178

Query: 178 LYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +P      IDV I  LR+KL + AG    I+TV   GY++ +
Sbjct: 179 VWGDAFDPFTMSNFIDVHIKNLRRKLGD-AGNDKIIQTVRSVGYMIED 225


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D   L   + L+L  E + V V D G  G++L     +D +ILD  L    G 
Sbjct: 1   MRILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR    +TPV  L+   +++D+V GL  GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DICQKLRTEGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRSP 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+     DL ++ D +    QG  I L+ KE  ++    L  +  LT E    
Sbjct: 121 SFDLTVTQTRFKVADLELDSDNQVAYRQGRAISLSEKEVMLLSYFMLHPSQVLTHEQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           HL+  +++P   ++   +  LR+K+  A G    I TV+G+GY
Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKI-EAEGELPLIHTVYGKGY 222


>gi|332652719|ref|ZP_08418464.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
 gi|332517865|gb|EGJ47468.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
          Length = 236

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ EDD  L  S+  +L+   F+V     GED +E  +  E+D +ILD+ +  + G 
Sbjct: 13  MKLLVAEDDPKLLKSLVHILEHNRFSVDGVSNGEDALEYGQTGEYDGLILDIMMPGLDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I TP   L+  + I  +V GL +GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 73  QVLQTLRRNGIKTPALFLTARTEISQRVEGLDAGADDYLPKPFSTAELLARIRAMLRRKD 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L+  G + +N     +  Q     L+GKE+Q++E++     T +  + F+ HL+ 
Sbjct: 133 TYLPDLLAIGSVILNRSTYQLVFQEKIQTLSGKEFQILEMMMQAPGTIIPTDRFITHLWG 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++ V I  LRKK+S A G    I  +   GYVL
Sbjct: 193 WDTNVDTSVVWVHISNLRKKIS-AIGAPMEIRFIRNAGYVL 232


>gi|15902751|ref|NP_358301.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae R6]
 gi|116515465|ref|YP_816195.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39]
 gi|182683717|ref|YP_001835464.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           CGSP14]
 gi|298503196|ref|YP_003725136.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|5830517|emb|CAB54564.1| response regulator [Streptococcus pneumoniae]
 gi|15458297|gb|AAK99511.1| Response regulator, transcriptional regulatory protein
           [Streptococcus pneumoniae R6]
 gi|116076041|gb|ABJ53761.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39]
 gi|182629051|gb|ACB89999.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           CGSP14]
 gi|298238791|gb|ADI69922.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
          Length = 246

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 24  IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 83  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 143 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 203 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 244


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ ++  ++L L+ E++ V V + G  G+E+ +  E+D ++LD+ L  + G E
Sbjct: 4   RILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR    + PV +L+   ++ DKV G + GA DY++KPF  EEL+AR+R I+R    
Sbjct: 64  VLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQ 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H +      LI  GDL+V L  + V  +   + LT +E++++  L+  KN   ++E  L+
Sbjct: 124 HTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E  ++DV+I  LR+KL      K  I TV G GY+L+E
Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKLDKGFRYK-LIHTVRGVGYMLKE 229


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 255


>gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELSARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224


>gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPIIQTVRGSGYMLR 224


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|299137241|ref|ZP_07030423.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600646|gb|EFI56802.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 228

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLK-SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++ED+  +AH+I   L+    F V   D G DG  L     +D ++LDL L  + G
Sbjct: 1   MRVLIVEDEVRIAHNIATALREGSGFAVDCADNGADGATLSAQGHYDLMLLDLMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++R +R    STP+ +L+  S  E  V  L +GADDY++KPF+  EL+AR++A++RR 
Sbjct: 61  MGIVRQVRARGDSTPILVLTARSEREKVVELLNAGADDYLTKPFDLGELLARVKALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G A  LI  G L VN   +TV      + L+  EY++ E L  R    ++K   L HLY
Sbjct: 121 KGVAHPLITFGRLRVNTIEQTVRCADLLVDLSPTEYRIFEYLIFRPRAIVSKRELLEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D R E    +I+  +  LRKKL  A G +  +ET+ GRGY L
Sbjct: 181 DYRWEHHSNVIEAHVSNLRKKL-RAMGEEATVETIRGRGYRL 221


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ LA  +   L+ E ++V     G   ++  +  E D ++LD+ L D  G 
Sbjct: 21  VRVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  + S PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS 
Sbjct: 81  EVMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 140

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            HA+    ++  GDL ++ D+  V      IHLT  E++++  L       L+K   L+ 
Sbjct: 141 AHAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDR 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  I++++I  LR+K+    G +  I T+ G GYVL+
Sbjct: 201 VWNYDFGGQDNIVELYISYLRRKIDK--GREPMIHTMRGVGYVLK 243


>gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 221

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  ++   L+ + F V     G           + A +LDLGL    G 
Sbjct: 1   MRILLVEDDPLLGDALRAGLRQQGFQVDWVREGPAAERELLTGAYQAAVLDLGLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI+TPV +L+  +++ D+V  L  GADDY+ KP + +EL AR+RA+VRR+ 
Sbjct: 61  EVLADLRRRKIATPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  G++ +   ++ V  +G RI L  +E+ ++  L L     LT++    HLY 
Sbjct: 121 GQVEDNLRVGEVELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V I  LRKKL+        IETV G GY++
Sbjct: 181 WGREVESNAIEVHIHHLRKKLA-----PELIETVRGVGYMI 216


>gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
 gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G DG+ L     +D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A+R  K  TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GVLAAVREQK-DTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L  +  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 SQEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV + +LR KL +    K  + TV G GYVL
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKLDDPYDTK-LLHTVRGMGYVL 219


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ +E  +  E+D ++LD+ L  + GF+
Sbjct: 4   KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      ++V G++ ++ + + V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G D P + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LIW-GYDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYFQ 228


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I  +LK E + V     G++ ++     ++DA+ILD+ L    GF
Sbjct: 17  MRILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGF 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+    +ED+V+GL  GADDY+ KPF  EEL+AR+R ++R+S 
Sbjct: 77  EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +Q+  +    +L+VN +  TV      I L+ KE+ ++E L   K   ++KE    H+
Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   E    I++V+I  LRKK+ +    K  I T+   GY+L+
Sbjct: 197 WDFDYEGGSNIVEVYIKFLRKKIDDNFSPK-LIHTIRRVGYILK 239


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ +++  +  ML++E F V V D G   +E    +  D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQIR-AKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G + +++D   V V G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGY 222


>gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA ++  MLK  N+ V +   GE G++      +D I+LD+ L  + G 
Sbjct: 1   MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   I+TPV +L+    I DKV GL SGADDY++KPF  EEL+ARIRAI RR +
Sbjct: 61  SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRR-K 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +  GD+ +N     +  +   + LT KE  ++  L LR N   +KE+ +  +
Sbjct: 120 GEVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E   ++V+I  LRKKL      K  I T+ G GY+L
Sbjct: 180 WGFDSDVEHNHVEVYISFLRKKLLFLT-SKVVINTLRGVGYIL 221


>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
 gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  + V GDL V+  A+ V +    + LT KE+ ++E L LR    ++K   L H++D
Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V+I  LR+KL         I TV G GY L
Sbjct: 181 FAYEGDPNIVEVYISALRRKLR-----ARLIRTVRGAGYRL 216


>gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
 gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
          Length = 219

 Score =  135 bits (341), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +      +++AI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSEDWEAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R   I+TP+ ILS   ++  +V GL +GADDY +KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  QG  I LT  E++++          +++   + H+Y 
Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216


>gi|332359755|gb|EGJ37570.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 224

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVATPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++SVNL   +  V    + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGEVSVNLSTNSTLVADKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL   A  KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTAFAKN-LHTLRSVGYILKD 222


>gi|254524477|ref|ZP_05136532.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219722068|gb|EED40593.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 229

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSG---HAVDWQADGLAAASVLRYQNFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RARGQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+   DE     I++++ +LRKKL   AG    I TV G GY+L
Sbjct: 178 LFGFDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLL 218


>gi|15900691|ref|NP_345295.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           TIGR4]
 gi|111658151|ref|ZP_01408848.1| hypothetical protein SpneT_02000676 [Streptococcus pneumoniae
           TIGR4]
 gi|148985849|ref|ZP_01818943.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP3-BS71]
 gi|148990411|ref|ZP_01821577.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992467|ref|ZP_01822162.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997122|ref|ZP_01824776.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003430|ref|ZP_01828319.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007683|ref|ZP_01831300.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010570|ref|ZP_01831941.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP19-BS75]
 gi|149021667|ref|ZP_01835698.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484457|ref|ZP_02709409.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1873-00]
 gi|168486188|ref|ZP_02710696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1087-00]
 gi|168489819|ref|ZP_02714018.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP195]
 gi|168490895|ref|ZP_02715038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC0288-04]
 gi|168492956|ref|ZP_02717099.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC3059-06]
 gi|168575461|ref|ZP_02721397.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           MLV-016]
 gi|169833866|ref|YP_001694261.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194398608|ref|YP_002037443.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54]
 gi|225854314|ref|YP_002735826.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           JJA]
 gi|225856472|ref|YP_002737983.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           P1031]
 gi|225858608|ref|YP_002740118.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           70585]
 gi|225861298|ref|YP_002742807.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237649444|ref|ZP_04523696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CCRI 1974]
 gi|237821004|ref|ZP_04596849.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CCRI 1974M2]
 gi|298230630|ref|ZP_06964311.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           str. Canada MDR_19F]
 gi|298255363|ref|ZP_06978949.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           str. Canada MDR_19A]
 gi|303255789|ref|ZP_07341830.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455]
 gi|303260265|ref|ZP_07346236.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP-BS293]
 gi|303261471|ref|ZP_07347419.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264139|ref|ZP_07350060.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS397]
 gi|303266251|ref|ZP_07352142.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS457]
 gi|303268689|ref|ZP_07354479.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS458]
 gi|307067403|ref|YP_003876369.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127650|ref|YP_003879681.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           670-6B]
 gi|61220925|sp|P0A4H7|CIAR_STRPN RecName: Full=Transcriptional regulatory protein CiaR
 gi|61220927|sp|P0A4H8|CIAR_STRR6 RecName: Full=Transcriptional regulatory protein CiaR
 gi|495276|emb|CAA54465.1| response regulator [Streptococcus pneumoniae]
 gi|14972274|gb|AAK74935.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           TIGR4]
 gi|147756822|gb|EDK63862.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758613|gb|EDK65611.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760838|gb|EDK67809.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP18-BS74]
 gi|147765051|gb|EDK71980.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP19-BS75]
 gi|147921995|gb|EDK73119.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP3-BS71]
 gi|147924316|gb|EDK75409.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928784|gb|EDK79797.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930128|gb|EDK81114.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996368|gb|ACA36980.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Hungary19A-6]
 gi|172042318|gb|EDT50364.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1873-00]
 gi|183570751|gb|EDT91279.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC1087-00]
 gi|183571796|gb|EDT92324.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP195]
 gi|183574782|gb|EDT95310.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC0288-04]
 gi|183577079|gb|EDT97607.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578577|gb|EDT99105.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           MLV-016]
 gi|194358275|gb|ACF56723.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54]
 gi|225720388|gb|ACO16242.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           70585]
 gi|225724185|gb|ACO20038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           JJA]
 gi|225725849|gb|ACO21701.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           P1031]
 gi|225726696|gb|ACO22547.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|291195955|emb|CBE70267.1| CiaR protein [Streptococcus pneumoniae]
 gi|291195959|emb|CBE70270.1| CiaR protein [Streptococcus pneumoniae]
 gi|301793955|emb|CBW36351.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301799813|emb|CBW32382.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801642|emb|CBW34340.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302597173|gb|EFL64278.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455]
 gi|302637605|gb|EFL68092.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638589|gb|EFL69053.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           SP-BS293]
 gi|302641749|gb|EFL72106.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS458]
 gi|302644181|gb|EFL74437.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS457]
 gi|302646544|gb|EFL76770.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           BS397]
 gi|306408940|gb|ADM84367.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484712|gb|ADM91581.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae
           670-6B]
 gi|327390155|gb|EGE88498.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332073074|gb|EGI83553.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332077215|gb|EGI87677.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332202662|gb|EGJ16731.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332203954|gb|EGJ18021.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332204809|gb|EGJ18874.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 224

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ VNL   TV+V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLTYGNIVVNLSTNTVKVEDTPVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYLLKD 222


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL+ ED  +L   I+  L  E F+ YVTDL   GED +       +D +ILD+ L  +
Sbjct: 1   MRILVAEDHPSLGPDIQRGL--ERFH-YVTDLATDGEDALASALATPYDLLILDVMLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV R LR A  + P+  L+    I+D+VRGL  G DDY+ KPF   EL AR+RA++R
Sbjct: 58  DGFEVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   D++++   +       ++ L+ +EY ++E L       L++E   +H
Sbjct: 118 REKSATSATLQFEDITLDTQTREAWRGSRQLTLSSREYALLEFLLHHPRQVLSRETIADH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++DG    +  IIDV+I  LR KL  A+G  + I+ + G GY L+
Sbjct: 178 VWDGEAPYQSNIIDVYIRYLRNKLC-ASGEPDVIQAIRGVGYQLK 221


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL  ED+ AL       LK+E F V     G + ++     ++D +ILD+ +  I G 
Sbjct: 1   MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV +L+   ++ D+V GL +GADDY++KPF   EL ARIRA++RR+ 
Sbjct: 61  TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +        DL+V    + V   G  I L+ +E+ ++E L   K   L++    N ++D
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    I+DV+I  LRKK+ +    K  I TV G GY LRE
Sbjct: 181 FGFEGGSNIVDVYIRYLRKKIDDPF-EKKLIHTVRGAGYTLRE 222


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14]
 gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14]
          Length = 219

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+      +V +L  DGI+         +DAI+LDLGL  +
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEQSG---WVAELSCDGIDALYRATSEPWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +R
Sbjct: 58  DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+A  +I  G+LS++     V  +G  I LT  E++++  L    +  +++   + H
Sbjct: 118 RSTGNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++R+K+     G + I+TV G GY +  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGYRINAN 219


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++++   +E +LK E + +   D GE  +E  +    D +ILD+ L  I G+E
Sbjct: 6   KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    I DK  G   GADDY+ KPF+  EL  R++A++RRS  
Sbjct: 66  VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             QS+        I  G+L +N ++  V V+G  ++LT KE++++  ++   +   T+E 
Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184

Query: 174 FLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              H++  RDE   +   I VFI KLR+K+        YI+TVWG GY
Sbjct: 185 LFAHMW--RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGY 230


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + + V     G++ IE  K  E+D ++LD+ L    GFE
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 63  VCQTIREFS-EMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNK 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++    S++  GDL ++ +++ V ++   I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 KSGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESL 181

Query: 175 LNHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LEYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFFR 231


>gi|157150145|ref|YP_001450361.1| transcriptional regulatory protein CiaR [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|157074939|gb|ABV09622.1| Transcriptional regulatory protein CiaR [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 224

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+ED+  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDNLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKDLREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   T  V G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENNLSYGDVTVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL       N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFANN-MQTLRSVGYILK 221


>gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 219

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 131/227 (57%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+S   N ++ +L  DGI+         +D I+LDLGL  +
Sbjct: 1   MKILVVEDEIILGEQIIDGLES---NGWIAELSSDGIDALYRATSEPWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+++R   ++TPV ILS  + +  +V GL +GADDY++KPF   EL+AR+RA +R
Sbjct: 58  DGLTVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+A  +I   +LS++     V  QG  + LT  E++++  L    +  +++   + H
Sbjct: 118 RSTGNASPVIQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+VFI ++R+K+     G + I+TV G GY +  N
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGYRINAN 219


>gi|325696865|gb|EGD38753.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327459810|gb|EGF06150.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
          Length = 224

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL      KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222


>gi|76818875|ref|YP_337410.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|76583348|gb|ABA52822.1| response regulator protein [Burkholderia pseudomallei 1710b]
          Length = 288

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 57  RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 117 VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 175

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 176 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 235

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 236 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 288


>gi|153955619|ref|YP_001396384.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348477|gb|EDK35013.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A ++  +LK  +++V +   GE G++      +D IILD+ L  + G 
Sbjct: 1   MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ LR   I TPV +L+     EDKVRGL SGADDY++KPF  EEL+AR+RA+ RR S
Sbjct: 61  SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GD+ ++     +  +     LT KE Q++ELL   K   ++K + +  L+
Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E   ++V++  LRKKL N      +I+TV G GYV+
Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNV-FIQTVRGAGYVI 221


>gi|114766017|ref|ZP_01445029.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Pelagibaca bermudensis
           HTCC2601]
 gi|114541735|gb|EAU44774.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseovarius sp.
           HTCC2601]
          Length = 222

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 121/218 (55%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  LA +I   L+ E  +V     GE+  +L +F  FD ++LD+ L    G+EV
Sbjct: 1   MLLVEDNDELAETILDRLRGEGHSVDRESNGEEANDLLRFSSFDLVLLDINLPGRSGYEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR++R    +TPV +L+  S I+D+V GL +GADDY+ KPF+  EL AR R + RR  G 
Sbjct: 61  LRSMRSRGDATPVIVLTARSEIDDRVVGLDAGADDYMVKPFDFRELSARCRVLARRRAGA 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + ++   G    +  AK   V G  + L  +E Q++E++       LTKE   + LY   
Sbjct: 121 SSNVFAAGPFRFDRAAKQAHVDGVLLELRAREVQLLEIMLDNLGRMLTKEEVADKLYTFE 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + P +  ++  + +LR+KL    G    I+T  G GY+
Sbjct: 181 ETPSLNAVEQLVTRLRRKL---GGTPLVIKTARGLGYM 215


>gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|239931754|ref|ZP_04688707.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440123|ref|ZP_06579513.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343018|gb|EFE69974.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 220

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +E  L++  F   V   GE G E      FD ++LD+GL D  GF 
Sbjct: 3   RILIVEDEERIASFVEKGLRANGFTTTVVPDGEAGYEYALTGGFDLVVLDIGLPDRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR ++++TPV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R  +R
Sbjct: 63  VLRELRESRVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++ +GDLS++L  +        + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLKSGDLSLDLRTRRARAADRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   ++TV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAEKVQTVRGMGYRL 218


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIP 58
           RIL+IED+  +A   +L+ +   F  Y+ D    GE+G++  +    D +ILDL L ++ 
Sbjct: 7   RILVIEDEHQIA---DLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMS 63

Query: 59  GFEVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           G EV R LR       P+ IL+   + EDK+ GL +GADDYI+KPFN EEL+ARIRA +R
Sbjct: 64  GEEVCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +   +S+I  GDL++NL ++       ++ LT +E+ ++E L+  +   ++KE     
Sbjct: 124 RRQPQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFER 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + +   + V+I  LR KL+ A G  + I T+ G GY+LR
Sbjct: 184 VWGYSFDIDSDAVKVYISYLRSKLT-AGGEPDMIHTIRGIGYMLR 227


>gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
 gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
          Length = 242

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 134/236 (56%), Gaps = 12/236 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-----FYEFD---AIILDL 52
           M IL++EDD  +A  +E  LK+E + V V   G  G+E  +       E D    I+LDL
Sbjct: 1   MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G EV + LR + + TPV +L+ + +++D+V GL++GADDY+ KPF+ EEL+ARI
Sbjct: 61  MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120

Query: 113 RAIVRRS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            A++RRS   R  A   +  G++ ++     V   G  + LT +E  ++EL        L
Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++E  L++++   ++P   ++DV++ +LR K+ +     ++I TV G GY L  + 
Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKI-DPPLASSFITTVRGLGYRLEPDP 235


>gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK LA ++   L      V +   GE+         +D  ILD+GL  + G 
Sbjct: 1   MRILLVEDDKVLADALSRALVQSAHAVDIVSTGEEADHALALGIYDLAILDIGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K + PV +L+   +++D+VRGL  GADDY++KPF+  EL AR+RA++RRS 
Sbjct: 61  DVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRS- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +  G L  +   + V      + L+ +E  ++ELL +R+   + KE  +NHLY 
Sbjct: 120 TNSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+V + +LRKKL         I TV G GY++
Sbjct: 180 WGDEVGDNAIEVNVYRLRKKLEPLG---CEIRTVRGMGYLM 217


>gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 231

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MRILL+ED+  L ++I+  L   N   Y+ D  +DG E   + E     +   I D  L 
Sbjct: 1   MRILLVEDESDLGNAIKRTLIQHN---YIVDWAQDGKEGLDYLEIGLSHYTLGIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +++R +R  K S P+ +L+   S EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  KLSGVDLIRKVRQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +  G+L+++    T+  Q        I LT KE+Q++E      N  +T
Sbjct: 118 QRRSPQINPQQLKVGNLTLDYSTYTIFCQDKEGDNQTIALTNKEFQLLEYFLHHPNQIVT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  L+ L++   EP   ++   I  LR+KL+   GG N+IET++G GY
Sbjct: 178 RDQLLSQLWEWESEPMSNVVAAQIRLLRRKLA-PYGGDNWIETIYGLGY 225


>gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 222

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+      + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|332286933|ref|YP_004418844.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330430886|gb|AEC22220.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 229

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A  +E  L    F             L    E+DA+I+DL L D  G 
Sbjct: 1   MRVLLVEDEREMAAWLERALAQSGFLPEHAPDARTAESLLAASEYDAVIMDLRLPDKHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R     TPV IL+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VRRSR
Sbjct: 61  VLLREMRNRGDVTPVLILTAQGALQDRVRGLNLGADDFLTKPFALEELEARLAALVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L  + +++   ++G  +HLT +E   + +L  R    + K    N +++
Sbjct: 121 GRQAPRMQCGSLIYDSESRAFGLEGAILHLTPREQAALAVLITRSGMPVEKSQLFNRVFE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E  +  I+V + +LRKKL   AG   +I TV G GY+L
Sbjct: 181 HDSEAGLDAIEVVLHRLRKKL---AGSDVHIVTVRGLGYML 218


>gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
 gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+      +   L    F V +   G DG  L     FD IILD+ L D+ G+
Sbjct: 1   MKLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ALR     TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +   DL+++L    VE  G++I+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNFETK-LIHTVRGMGYML 221


>gi|167827447|ref|ZP_02458918.1| response regulator protein [Burkholderia pseudomallei 9]
          Length = 253

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 22  RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 82  VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 140

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 141 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 200

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 201 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 253


>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
          Length = 225

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  L  S+   L+   + +     GE  +EL     +D ++LDL L  + G 
Sbjct: 1   MRLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV ILS  S I DKV GL +GA+DY++KPF+  EL AR+R++ RR  
Sbjct: 61  TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+ +  ++     G  I LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     I V I  LRKKL  A  G + I    G GY L EN
Sbjct: 181 SSVDAFSNSIRVHISALRKKLRTAL-GYDPIRNRIGEGYELEEN 223


>gi|27375415|ref|NP_766944.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348552|dbj|BAC45569.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 324

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD   A +I   L    F V     G DG++  +    DA+I+D  L  + G  
Sbjct: 101 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 160

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR  ++ TPV +LS + +++D+VRGL+ G DDY++KPF   ELVARI A++RR   
Sbjct: 161 VIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPTD 220

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G L ++L  +T       + L  +E++++E +  R +  LT+ M L  +++ 
Sbjct: 221 SRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWNY 280

Query: 182 RDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  P    +IDV + +LR K+ +  G    I  V G G+VLR
Sbjct: 281 KFVPATTNLIDVHMGRLRHKV-DGPGEVQLIHNVRGSGFVLR 321


>gi|291166422|gb|EFE28468.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 227

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 133/222 (59%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           M++L++ED+ ++   + L  K E F+V  +D G   I++  +  +    ILD+ + DI G
Sbjct: 1   MKMLILEDEMSIRSFVTLNFKREGFDVLESDTGLSAIKIFDENPDIQLAILDVMIPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FEVL+ +R    +  + +L+  +  +DKV GL+ GADDYI KPF+  EL+AR+R+++RR 
Sbjct: 61  FEVLKYIRSKSKNVGIIMLTARTHEQDKVMGLEYGADDYIGKPFSPAELIARVRSLIRRL 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    ++IV+G   +++  +        I LT KE++M++L    ++ +L+++  LN 
Sbjct: 121 SIKDENVNVIVSGRFKLDVANRKFFRDETEIELTPKEFEMLQLFLTNRHKSLSRDYILNQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      ++K++DV I ++RKK+   A    Y++T+WG GY
Sbjct: 181 IWGDNYFGDLKVVDVNIRRIRKKIEEDAANPTYLKTIWGYGY 222


>gi|302554937|ref|ZP_07307279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472555|gb|EFL35648.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 238

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E +       GED +     +  D ++LDL L  + GF
Sbjct: 10  VRLLVVDDDPPIADLVATVARYEGWEAVTAYSGEDALRRAADFHPDIVVLDLMLPGVDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 70  GVLDRLRASGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 129

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  +S++  GDL+++ D + V      + LT  EY+++  L  +  T LTK   L+H+
Sbjct: 130 GPAFQRSVLRVGDLTMDEDTREVRRGDKLLSLTPTEYEVLRYLMRKSPTVLTKAQILDHV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAK 226
           ++        ++++ + +LR+KL     G    I TV G GYVLR+ ++
Sbjct: 190 WEYGFGGRSNVVELVVSRLRRKLDETDDGAAPLIHTVRGFGYVLRQASE 238


>gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ ++  +   L+ + F+ ++T+   DG++  +  + D IILDL L D  G EV
Sbjct: 7   VLIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRELRTLT-SAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q L+  G LS++  A+ V      I L+ KE+ ++  L+   N   TK   L+ 
Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      E   I V++ +LR+KL  +     YI TVWG GY
Sbjct: 186 VWGYSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGY 227


>gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +++ +++ L      + V     DG       EFDA++LD+ L D  G 
Sbjct: 1   MRILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR     TPV +L+ +  I D+++GL SGADDYI KPF+ +EL AR+RAI RR  
Sbjct: 61  DLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +    L+++    TV V      L+ +E+ ++  L       ++K    + LY 
Sbjct: 121 GRASPCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEIESRLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++E E   ++V I KLR K+     G+  IET+ G GY +R
Sbjct: 181 WQEEIESNTVEVHIHKLRTKV-----GREKIETIRGIGYRMR 217


>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR +
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S + V GDL V+  A+ V +    + LT KE+ ++E L LR    ++K   L H++
Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E +  I++V++  LR+KL         I TV G GY L
Sbjct: 181 DFAYEGDPNIVEVYVSALRRKLR-----AGLIRTVRGAGYRL 217


>gi|296130228|ref|YP_003637478.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022043|gb|ADG75279.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 18/227 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +
Sbjct: 3   QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGAA--SADLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRSQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172
                   HAQ++ V  D++ +        QG R +HLT KE+ ++ +L     T +++E
Sbjct: 121 DPADEDELHAQNVRV--DVAAHR-----AFQGERELHLTAKEFDLLRVLVAAAGTVVSRE 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  ++        K +D+ +  LR+KL + A    YI TV G G+
Sbjct: 174 TLMREVWGSDPTGSTKTLDMHVSWLRRKLGDDANAPRYISTVRGMGF 220


>gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD  LA  I   L+ +   V        G  + +   +D +ILD+ L + P  
Sbjct: 1   MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF++ R LR  +   P+  L+    ++ K+ GL +G DDY++KPF+  EL ARIRA+VRR
Sbjct: 61  GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120

Query: 119 SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++G A +LI +     ++L A  V   G  + LT +EY ++E L L      ++   +  
Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G  E + K++DV++  LR+KL     G++++ETV G GY L
Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKL-----GEDFVETVRGLGYRL 219


>gi|219855998|ref|YP_002473120.1| hypothetical protein CKR_2655 [Clostridium kluyveri NBRC 12016]
 gi|219569722|dbj|BAH07706.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A ++  +LK  +++V +   GE G++      +D IILD+ L  + G 
Sbjct: 3   MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ LR   I TPV +L+     EDKVRGL SGADDY++KPF  EEL+AR+RA+ RR S
Sbjct: 63  SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GD+ ++     +  +     LT KE Q++ELL   K   ++K + +  L+
Sbjct: 123 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E   ++V++  LRKKL N      +I+TV G GYV+
Sbjct: 183 GYETDVEYNNVEVYVSFLRKKLRNIKSNV-FIQTVRGAGYVI 223


>gi|86751792|ref|YP_488288.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86574820|gb|ABD09377.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 221

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD  +A  +   L    +       GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R A   TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TILKRWREAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  GDL+++     V ++G ++ L+  EY++   L L +   +++     ++Y 
Sbjct: 121 GHASSVVCIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V + ++RKKL     G   IET  G GY++
Sbjct: 181 QDDAHDSNAIEVLVGRVRKKL-----GPELIETRRGFGYIV 216


>gi|53721717|ref|YP_110702.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126443912|ref|YP_001062018.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126458594|ref|YP_001074970.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278879|ref|ZP_01765592.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722901|ref|ZP_02406137.1| response regulator protein [Burkholderia pseudomallei DM98]
 gi|167741882|ref|ZP_02414656.1| response regulator protein [Burkholderia pseudomallei 14]
 gi|167819064|ref|ZP_02450744.1| response regulator protein [Burkholderia pseudomallei 91]
 gi|167848919|ref|ZP_02474427.1| response regulator protein [Burkholderia pseudomallei B7210]
 gi|167897524|ref|ZP_02484926.1| response regulator protein [Burkholderia pseudomallei 7894]
 gi|167905878|ref|ZP_02493083.1| response regulator protein [Burkholderia pseudomallei NCTC 13177]
 gi|167914184|ref|ZP_02501275.1| response regulator protein [Burkholderia pseudomallei 112]
 gi|167922095|ref|ZP_02509186.1| response regulator protein [Burkholderia pseudomallei BCC215]
 gi|217419131|ref|ZP_03450638.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237507446|ref|ZP_04520161.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242312817|ref|ZP_04811834.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254183056|ref|ZP_04889648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189719|ref|ZP_04896228.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193143|ref|ZP_04899578.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254264092|ref|ZP_04954957.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299993|ref|ZP_04967439.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52212131|emb|CAH38148.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126223403|gb|ABN86908.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126232362|gb|ABN95775.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134249298|gb|EBA49379.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|157810175|gb|EDO87345.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937396|gb|EDO93066.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649897|gb|EDS82590.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213589|gb|EDU10632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398435|gb|EEC38450.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|234999651|gb|EEP49075.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242136056|gb|EES22459.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215094|gb|EET04479.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 240

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 133/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 69  VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIR-QRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L     +V   D G +G+E     ++D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPELDGLV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ++TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR+ G
Sbjct: 63  IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNNG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++   DL +NL ++     G  + L   EY+++E L       L++ M    ++
Sbjct: 123 AREPETVLRVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G +  I TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLEPLIRTVRGSGYVIAE 225


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 1/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A +++  L+ E F V V   GE G+   +   +D I+LD  L  + G 
Sbjct: 1   MRILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR +   TP+ +L+    I D+V GL +GADDY+ KPF  EEL+ARIR+++RR +
Sbjct: 61  EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++N     V+     + LT KE+ ++E L   +   +TK+M LNH++D
Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              +     I+V+I  LR K+     G    I T  G GY
Sbjct: 181 YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGY 220


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL LK E +NV V + G  G+   +  + D I+LD  L  + G ++
Sbjct: 6   ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR++  
Sbjct: 66  CKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+   DL++N + + V      I LT KE+ ++E L       LT++  L  ++   
Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWGYD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEKEKRIIQTVRGVGYVLRD 225


>gi|301156196|emb|CBW15667.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus parainfluenzae T3T1]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  + + +++ L    F V + TD G+ G+       +DA++LDL L  + G
Sbjct: 1   MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTD-GQSGLNALIGAPYDAVVLDLTLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+  R      PV IL+   +++++++G+Q GADDY+ KPF   E+V R++A++RR 
Sbjct: 60  LDVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +  I  G++ ++   +   +    I LTG+EY+++EL  L K   L++      L 
Sbjct: 120 YGQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 NWDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 130/232 (56%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G + ++  +   +DA+ILDL L ++ G E
Sbjct: 9   QILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 69  ICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 128

Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G AQ+  +I    L+++  A+TV + G  + LT +E++++   +       ++   L  
Sbjct: 129 MGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALLEQ 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++  + E     ++  I +LR K+   A     + TVWG+GY   E   D +
Sbjct: 189 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQNHDAS 240


>gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
 gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
 gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+ AL+ ++  +L+  N++V     G+  +E  +   +D +ILD+ +  I G 
Sbjct: 1   MRLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGVILDIMMPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR      PV +L+  S ++DKV GL +GA+DY++KPF+  EL+ARIRA+ R   
Sbjct: 61  TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S +  G++ +N  +  +        L  KE+QM+E+L       ++ E F+  ++ 
Sbjct: 121 AHPDSQLQMGNVVLNRASFELSTPSGSYRLANKEFQMMEMLMSNPKCLISSERFMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E+ ++ V+I  LRKKL+ A     +I+     GY L E
Sbjct: 181 YDSEAEINVVWVYISYLRKKLA-ALHATIHIKASRNAGYSLEE 222


>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 229

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 129/226 (57%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 1   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+  + +ED+VRGLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 61  AVLAALRQSR-QTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGL 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ     +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    
Sbjct: 120 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++D   + E  +++V + +LR KL +A   +  + TV G GYVL
Sbjct: 179 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFEQPLLHTVRGMGYVL 223


>gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 222

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E++++  +  GE+G+ L     +D I+LD+ L  + G 
Sbjct: 1   MKILIIEDDVKIVNFLKKGLEEESYSIDYSHNGEEGLYLASVNSYDLILLDIMLPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  KI+TP+ +L+   SIED ++GL  GA+DY+ KPF+  EL+ARIR +  R++
Sbjct: 61  EVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIR-VQLRAK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L AKT +  G  I LT KE+ ++E L   +N  L+ E  L  + +
Sbjct: 120 DSTQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLS-ETVLASMLN 178

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE  +  +++V+I +LR K+ +    K  I+T+ G G+
Sbjct: 179 NMDESNISNLVNVYIYRLRNKI-DKPYEKKLIKTIRGLGF 217


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 252

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  +PG 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLPKMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSGA---RIATVRGLGYCLEKAAP 223


>gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
 gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
          Length = 224

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIR-QRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LYD   +     I+V++  LR KL     GK++I T+ G GY L ++
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRLGQS 224


>gi|269793520|ref|YP_003312975.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269095705|gb|ACZ20141.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 217

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 128/219 (58%), Gaps = 6/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +  ++   L +E F V V   G  G++L +   +DAI+LD+ L  + G+
Sbjct: 1   MRILVVDDEVVMTRALRRGLGAEGFAVDVAHDGRTGLDLARDGAYDAIVLDIMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  ++ TPV +LS      D   GL  GADDY++KPF    LVAR+RA++RR  
Sbjct: 61  DVLQTLRAEEVWTPVLLLSAKDGDHDVADGLDVGADDYLTKPFAFVVLVARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GD++++  +  V ++G  +  T +E+ ++E L  R    + K    +H++D
Sbjct: 121 VPRPVVLTVGDVALDPASHVVTLRGEPVATTAREFALLEYLLRRPGQVVGKVELRDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D  ++ +++V++  LR+KL     G++ + TV G GY
Sbjct: 181 G-DGEDLNVVEVYVGYLRRKL-----GRDVVATVRGAGY 213


>gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 218

 Score =  135 bits (340), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD+ +  ++E  L  +++ + V   GE+G+ L     +D I+LD+ L  I G  + R 
Sbjct: 1   MEDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLPKIDGIALCRR 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR    STP+ +L+   +I DKV GL +GADDY+ KPF+ EEL ARIRA++RR    A  
Sbjct: 61  LRSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAPP 120

Query: 126 LIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           ++  G L   LD  T EV  Q   + L+ KEY ++E          ++   L HL+    
Sbjct: 121 VLEWGKL--RLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLWPFER 178

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            PE   +   I  LR+KL       + IETV+G GY L++
Sbjct: 179 LPEEATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRLKQ 218


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 222


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 4/228 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD  ++  + ++L++E+F V V   G+ G+E+     ++ IILDL L  + G+E+ 
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68

Query: 64  RALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           R LR   A  STP+ +L+  +   DKV GLQ GADDY++KPF   E +AR+ A++RR+  
Sbjct: 69  RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + Q    +    L++   +    ++   + LT KE++++ +L+     TL +E  L  ++
Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                   + ID  I +LR+K+S    G  +++TVWG GY L     D
Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236


>gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   ++V V + G  G+ L +  ++D IILD+ L  + G+
Sbjct: 1   MRILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    + D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVVKTLRATR-ATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRSKVDDNFPVK-LIHTVRGVGYVL 219


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 132/222 (59%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++ + ++  ML+ E F V+    G +G+EL +    D ++LDL L  + G +
Sbjct: 4   QLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLSGTD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR  G
Sbjct: 64  VCRRLR-ERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++  G + +++D   V V+G  +HL  +E++++E+L       LT++  ++ 
Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G    + K +DV + +LR ++ +      ++ TV G GY
Sbjct: 183 IWGGDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGY 224


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   I + L+ + F V     G + +   + +    ++LD+ L D+ GFE
Sbjct: 7   RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +   P+  L+   + +D+VRGL  G DDY++KPF+ EELVARIR I+RR+ G
Sbjct: 67  VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRT-G 125

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A+   S +V  DL ++ D + V   G  + LT  EY+++  L L     LT+   L H+
Sbjct: 126 MAEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + ++++ ++  +RKKL   A G   I+TV G GY LR
Sbjct: 186 WSYDFGGDARVLETYVSYVRKKLD--AHGPPLIQTVRGVGYALR 227


>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   ++  L+++ ++V     GE+ ++     E+DA++LD+ +  I G 
Sbjct: 1   MRILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    STPV +L+   SIED+V GL  GADDY+ KPF  EEL+ARIR ++R+S 
Sbjct: 61  QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   +L+V+L+   V      I L+ KE+ ++  + + K   L+++    H+
Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        ++DV+I  LR+K+ ++   K  I T+ G GYVLRE+
Sbjct: 181 WNYDYAGASNVVDVYIRYLRRKIDDSYEPK-LIHTIRGAGYVLRES 225


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G++ +E+     FD I+LD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + + LR  K++ P+ IL+      D++ GL+ GADDY+SKPF+  E++ARI+AI RR S+
Sbjct: 63  ITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMSQ 122

Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q        L+  G +  +L    V+V+G +I LT KE++++     RK+  + ++ 
Sbjct: 123 NEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+ ++    + + +I+DV I  LR+K+ +      Y++TV G GY  +E  +
Sbjct: 183 LLDRIWHFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTFKEPHR 235


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 14  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RR   
Sbjct: 74  AARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   +  ++  GDLS+NL  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 134 AAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246


>gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 219

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   IE  L+   F V +  D  + G+ L     +  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLAL-DTTAYALVLLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ LR +    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR+
Sbjct: 60  MELLKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +   I   DL+VN  A+TVEV   R+ LT +E+ ++  L   +    ++      LY
Sbjct: 120 QGRSVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++E E   I+V +  LRKKL     G   I+TV   GYV+
Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVV 216


>gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 258

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  S+   L+ E + V +V D G       +  ++D ++LDLGL  + G
Sbjct: 1   MRLLLVEDDVMIGESVLDALRGEGYAVDWVRD-GAVADSALRTEQYDLVLLDLGLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ALR  + +TPV I +   ++  ++ GL +GADDY+ KP++ +EL ARIRA++RR+
Sbjct: 60  IAVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +   G +S+N       + G  + L+ +E+ ++E L  R    L++      LY
Sbjct: 120 AGRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +DE     ++V++  LRKKL     G + I  + G GY++
Sbjct: 180 SWKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMI 216


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  IE  LK   ++V     GE   E+ K +  D I+LDL L  + G +
Sbjct: 4   KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    + P+ +L+ +  + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + 
Sbjct: 64  VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123

Query: 121 --GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G A+S     G L+V  + + V + G  I LT KE++++  L   +   L+++  L+ 
Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     + +I+DV I  LR K+   A    YI TV   GY L
Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227


>gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L   +   L    + V   + GE    L K   +D  ++DLGL    G 
Sbjct: 1   MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R      P+ IL+     +DKV GL++GADDY+ KPF+  EL+AR+ A++RRS 
Sbjct: 61  EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G ++++  AK V++ G  + LT  EY  +E L  R    ++K     HLY 
Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  +I+VFI +LRKKL +  G    I T+ G+GY
Sbjct: 181 QDFDRDSNVIEVFIGRLRKKL-DPDGVNKPITTLRGQGY 218


>gi|297163405|gb|ADI13117.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 131/222 (59%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  I+LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCSQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGTRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE  +  +++  +  LRKK+ +AA  +  ++TV G GY L
Sbjct: 181 --DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRL 219


>gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 219

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD+ +   +E  L+   F V +  D  + G+ L    ++  ++LDLGL  + G
Sbjct: 1   MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKAGLAL-DTTQYALVVLDLGLPRVSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  ELVAR  A++RR+
Sbjct: 60  LELLKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  LI   +L+VN  A+TV+V   R+ LT +E+ ++  L        ++      LY
Sbjct: 120 QGRSIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++E E   I+V +  LRKKL     G N I+TV   GYV+
Sbjct: 180 GWQEEIESNAIEVHVSNLRKKL-----GANLIKTVRNIGYVM 216


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 132/226 (58%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+ ++A  ++  L+   F V     G+ G+EL +  +   I+LDL L ++ G E
Sbjct: 4   KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RRS  
Sbjct: 64  VCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAP 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I  GD+ +      V  QG R+ LT KE++++  L+  K   LT++  L+ 
Sbjct: 124 QESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     + +I+DV I  LR+K+        YI+T+ G GY + E
Sbjct: 184 IWNYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEE 229


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 25  VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 85  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 144

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++  L+      L+++  L  ++ 
Sbjct: 145 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 204

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  + DVF+  LR+KL    G    I TV G GYVLRE A
Sbjct: 205 YDFDVDTNVADVFVSYLRRKLER-DGLPRVIHTVRGIGYVLREEA 248


>gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L+   F   V   GE G++  +   +DAIILD+ L    GF
Sbjct: 1   MRVLIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R     T V +L+    + D+V GL++GADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  EILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L        G  + LT KE++++ LL+ R    +++ +    ++D
Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    ++DV + +LR KL +    +  I TV G GYVL +  
Sbjct: 181 INFDSGTNVVDVHMYRLRAKLDDPF-SRRLIHTVRGVGYVLEDRG 224


>gi|297154563|gb|ADI04275.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 131/222 (59%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  I+LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE  +  +++  +  LRKK+ +AA  +  ++TV G GY L
Sbjct: 181 --DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRL 219


>gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 220

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 125/217 (57%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK L+  +   L++E + V   + GE  +EL + Y    ++LD+ L D+ GF V
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVENGERAVELFERYGTRLVVLDINLPDMNGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR     TP+ I+S  +  EDK+ GL  GADDYI KP++ + L+A+I+ I +R   +
Sbjct: 64  CSKLR-ENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRR--Y 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S++    +++NL  KT E+ G+ + L+ KE+ ++ LL   +   L KE   + ++   
Sbjct: 121 QRSMLSASGVTLNLANKTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E++ + V I +LR+KL +       + TVWG GY
Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNAKRLLTVWGVGY 217


>gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +IE ++K    +  N+     G  G+ L    ++D I+LD  L  +
Sbjct: 1   MKILLVEDD---ATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     A++ +  G+L + L  + V + G+ + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGLSQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+ +      D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++ RR 
Sbjct: 61  RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++  GDL V+  A+ V V      LT KE+ ++E L++R    ++K   L H++
Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  II+V+I  LR+KL     G   I+TV G GY L
Sbjct: 181 DFAYDGDPNIIEVYISSLRRKL-----GAPRIQTVRGAGYRL 217


>gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
 gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
 gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii]
 gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii]
 gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii]
 gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii]
 gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii]
 gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii]
 gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii]
 gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii]
 gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii]
 gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii]
 gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
          Length = 224

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIR-QRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LYD   +     I+V++  LR KL     GK++I T+ G GY L ++
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRLGQS 224


>gi|298291053|ref|YP_003692992.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927564|gb|ADH88373.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 229

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD  +   +     SE++ V +   GE+ +       ++AIILD+ L    G 
Sbjct: 1   MTILIVEDDPDIGSLLRRGFSSESYQVELVGDGEEALRAANGKAWEAIILDVMLPGRSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119
           EV +ALR    + P+ +LS  SS+ ++  GL +GADDYI KPF  EEL+AR++   +RRS
Sbjct: 61  EVCKALRAGGQTAPIIMLSARSSVNERTEGLMAGADDYIIKPFAFEELLARLKVQALRRS 120

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++  ++T G LS++LD +  ++ G R+ LT +E +++ LL    +  L +      L
Sbjct: 121 NADSEPRVLTAGPLSLDLDTRQAQLAGTRVRLTEREVELLALLMRHPSEPLARADIFAAL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVL 221
           + G     + ++DV++  LR KL+ A   G + I TV GRG++ 
Sbjct: 181 WAGHGGASLNVVDVYVGYLRHKLAEALPDGGHMIVTVRGRGFMF 224


>gi|325520568|gb|EGC99646.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia sp. TJI49]
          Length = 219

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E+ L    ++V     G           F  ++LDLGL    G 
Sbjct: 1   MRLLLVEDDDLIGSGLEISLSQAGYHVDWLRDGHAAAAALATTRFALVVLDLGLPGKSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LRALR A  + PV +L+   ++ D+V GL  GADDY++KPF+  E++AR RA+VRRS+
Sbjct: 61  QLLRALREAGDTVPVLVLTARGNVADRVSGLDDGADDYLAKPFDLSEVLARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV  D++++L   TV     RI LT +E+ ++  L        ++    + LY 
Sbjct: 121 GRAGDEIVWRDITIDLGTHTVTRDAARIALTAREWAILVQLVSHPGIPQSRARLEDGLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  E   I+V +  LRKKL     G + I TV G GYV+
Sbjct: 181 WQEGLESNAIEVHVSNLRKKL-----GADLIRTVRGIGYVV 216


>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ LA +I  +L   ++N      G+ G+  C+   +DA+I+D  L  + G 
Sbjct: 1   MNILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLYDAVIMDGMLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR    S PV +L+  +S  DKV GL +GADDY++KPF   EL+AR+RA+ RR  
Sbjct: 61  EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++L    +   GH +HL+GKE++++ +L       ++K+  L  ++ 
Sbjct: 121 DVVIDEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E     ++ +I  LRKK+S+       I T+   GY L + A D+
Sbjct: 181 TDGEASENSVEAYISFLRKKISHVHSTVQ-ITTLRMLGYRLEQFANDD 227


>gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 258

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  S+   L+ E + V +V D G       +  ++D ++LDLGL  + G
Sbjct: 1   MRLLLVEDDVMIGESVLDALRGEGYAVDWVRD-GAVADSALRTEQYDLVLLDLGLPKMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ALR  + +TPV I +   ++  ++ GL +GADDY+ KP++ +EL ARIRA++RR+
Sbjct: 60  IAVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +   G +S+N       + G  + L+ +E+ ++E L  R    L++      LY
Sbjct: 120 AGRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +DE     ++V++  LRKKL     G + I  + G GY++
Sbjct: 180 SWKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMI 216


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y+ D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A ++ V        GDL ++L  + V   G  + L   E+ ++E+        LT+E  
Sbjct: 132 AATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQI 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR    +
Sbjct: 192 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGGAE 243


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD+ +   +   L  E + V     G +G+ L    + D +ILD+ +  + G+EV
Sbjct: 5   IMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVDGWEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+    I D+V+GL +GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 65  CRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKSDK 124

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + + IV  DL+++LD++     G RI LT KEY ++ L        LT++  +  +
Sbjct: 125 IDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIMEKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  +++V+I  LR+KL    G K  I+TV G GYVLR
Sbjct: 185 WGYDFSGESNVLEVYIAMLRQKLEE-GGAKRIIQTVRGTGYVLR 227


>gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 235

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDD  +A  IE +L      V     G  G+ + +  E+DA+I+D  L +  G 
Sbjct: 10  LKVLVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEKDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R A  +TP   LS +  +++KV+GL++GA+DY+ KPF   EL AR+ A+ RR  
Sbjct: 70  TLLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQT 129

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V   GDL +NL  + V   G +I L  +E++++E L       +T+ M L  +
Sbjct: 130 NAEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV I +LR K+      +  ++TV G GY L+  
Sbjct: 190 WDYNFDPQTNVIDVHISRLRAKIDKEF-AEPLLQTVRGAGYRLQSQ 234


>gi|332523841|ref|ZP_08400093.1| putative response regulator ArlR [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332315105|gb|EGJ28090.1| putative response regulator ArlR [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 224

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I TPV I++    ++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKTPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ I  G+L V+L+   V+V    + L GKEY ++  L   +N  L K    + ++ 
Sbjct: 121 KFNENSITFGNLRVDLNRNAVKVNDRAVELLGKEYDLLIYLLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V++ K+RKKL N     N ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKNTDFAAN-LQTLRSVGYILKAN 223


>gi|26988882|ref|NP_744307.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24983690|gb|AAN67771.1|AE016408_9 DNA-binding heavy metal response regulator [Pseudomonas putida
           KT2440]
          Length = 226

 Score =  135 bits (340), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q  I++  DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E  +
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERTE 226


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 132/230 (57%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ AL  +++  L+ E + V +   G   +E+ +   ++ ++LD+ +  + G  
Sbjct: 8   RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A    PV +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RA++RRS  
Sbjct: 68  ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +       +++ GDL ++  ++ V   G  + LT  EY ++ELL +     LT+E  
Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++    EP    +DV++  LR+K + AAG    I TV G GYVLR +
Sbjct: 188 LSEVWGFDFEPSSNSLDVYVMYLRRK-TEAAGRSRLIHTVRGVGYVLRSS 236


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ +E  +  E+D ++LD+ L  + GF+
Sbjct: 25  KILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKLDGFQ 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 85  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    ++IV G + ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN 
Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++ G D P + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 204 IW-GYDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYFQ 248


>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ +   I+  L+ ENF V     GE+ + L K  EFD I+LDL L    G +
Sbjct: 4   RILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFSGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  K   PV I+S   S  DK  GL  GADDYISKP +  EL AR+ A +RR+  
Sbjct: 64  ILKKVR-EKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +       A ++I   +LS++L   +V+V+     LT KE+ +++L    ++   TKE  
Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++         +I+V I +LR+K+        YI T+WG GY L E
Sbjct: 183 YQFIWQDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKLGE 231


>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 223

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  SI  +L  E F V     GEDG+ L     +D I+LD+ L  I GF
Sbjct: 1   MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRS- 118

Query: 121 GHAQSLIVTGDLSVNL--DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G+  +        + L    K ++V G  I LT K+Y+++E L       L +E   + +
Sbjct: 119 GNLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 179 WGFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYMLKEQ 223


>gi|117923628|ref|YP_864245.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117607384|gb|ABK42839.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 221

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED  +LA  ++  L +  F V      E+G  + +   +DA+ILDLGL D  G 
Sbjct: 1   MRILVVEDHASLAAGLKKDLGAAGFVVDWAANAEEGAFMGREEPYDAVILDLGLPDDSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A +  PV IL+   +   +V GLQ+G DDY+ KPF+ EEL+AR+ A++RR  
Sbjct: 61  NVLRGWRAAGVDVPVIILTAWDAWHQRVDGLQAGGDDYLGKPFHMEELIARLNALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +  +    + ++   + + +    +H LT  E++++  L L  +  L+K     H+Y
Sbjct: 121 GVVRPALTLEGIHLDETDQQLSLANGELHTLTHTEFRLLRYLMLHPDQLLSKSQLTEHIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++ +  +I+V+I +LR+ L     G+  IET  G+GY LR
Sbjct: 181 AYDEDRDSNVIEVYIKRLRRLL-----GQQRIETRRGQGYRLR 218


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 75  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++ DA  V   G  I L+  E++++  L +     ++K   L+H++
Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237


>gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 221

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD ALA  +   LK   + V     GE+ + L +   +  ++LDLGL D+ GF
Sbjct: 1   MRILIVEDDAALARGVTGALKLAGYAVDHVASGEEAVRLERAEPYGLVVLDLGLPDLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R    + PV IL+   ++ D+V+GL  GADDY+ KPF+  E  AR+RA++RR +
Sbjct: 61  EVLTLIRRRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALMRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L  +    TV + G  + L  +E  ++E L  R    + K+     ++ 
Sbjct: 121 GTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAGEVF- 179

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEP     I++++ +LRKKL         I T+ G GY++ ENA
Sbjct: 180 GFDEPVAPNAIELYVARLRKKLEPDG---PQIRTIRGLGYLM-ENA 221


>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
           FL6-60]
          Length = 220

 Score =  135 bits (339), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+             L +   +  IILDLGL  + G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I  PV IL+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   D+ ++L ++ V   G  + +T KE+ ++  L +R   T+++E+    LY 
Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +DE     ++V I  LR+KL     GKN I+T+ G GY L
Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GKNRIKTLRGVGYRL 216


>gi|298290576|ref|YP_003692515.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927087|gb|ADH87896.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  ++  L++  F V       D         +D  +LDL L D  G 
Sbjct: 1   MRLLLVEDERELAGLLDAGLRAAGFAVDRARTVADAEAALNTEGYDIAVLDLRLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R   ++ PV IL+   ++ D+VRGL+ G DDY+ KPF+ +ELVAR+RA++RR  
Sbjct: 61  DLLRRQRARGLAIPVLILTARDNLADRVRGLEQGGDDYVLKPFHMDELVARLRALLRRPN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I+ G++++N   ++V V    + L+ +E  ++EL   R    LT+E     LY 
Sbjct: 121 QALGANIIVGNVALNTADRSVTVSHAPLPLSRRELGLLELFMRRSGRVLTRECIERALYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   ++V + +LR+KL+  AG    I T+ G GY+L E
Sbjct: 181 FDDELESNAVEVLLHRLRRKLTG-AGASPEIHTLRGIGYLLEE 222


>gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++  A+ ++  L    F+V + + GEDG+ L     +D IILD+ L    G+
Sbjct: 1   MRILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS   ++ D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL ++L        GH + LT KE+Q++ L+  R+   LT+      ++ 
Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +    K  I T+ G GYV+ E A
Sbjct: 181 INFDSDTNVVDVAIRRLRKKVDDPFPLK-LIHTIRGVGYVIDEAA 224


>gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD ALA  +   L+           GED   L     +  I+LD+GL  + GF
Sbjct: 1   MRVLVVEDDAALARGLVASLRLAGLAADHEADGEDAARLALSEPYSLIVLDIGLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+   ++ D+VRGL  GADDY+ KPF   E  AR+RA +RR +
Sbjct: 61  EVLRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G L+++     V + G  + L  +E  ++ +L  +    + KE   N ++ 
Sbjct: 121 GQPNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++++I +LRKKL         I T+ G GY+L
Sbjct: 181 FDDEVAPNALELYIARLRKKLQPKG---PEIRTIRGLGYLL 218


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ 
Sbjct: 121 EPEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGY 222


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +  ++DA++LDL L  I G E
Sbjct: 16  RVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 76  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A SL V G +S++  A+TV+V   R+ LT +E+ ++   +   +   ++   
Sbjct: 136 IERNARIDAGSLAVHG-VSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LNH++  + E     ++  I +LR K+         I TVWGRGY
Sbjct: 195 LNHVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGY 239


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   + V V   G DG  L +   FD +ILD+ L  + G+
Sbjct: 1   MRILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R     TPV  L+   ++ED+VRGL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  QG RI+LT KE+ ++ LL  R+   L++    + ++ 
Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I TV G GYVL
Sbjct: 181 MNFDSDTNVVDVAIRRLRAKVDDPYPLK-LIHTVRGMGYVL 220


>gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 239

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+   + G  G+ L    ++D +ILD  L  +
Sbjct: 15  MKILLVEDD---ATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQL 71

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 72  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 131

Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S  +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +   
Sbjct: 132 RGQSTPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFE 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 192 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 237


>gi|313499723|gb|ADR61089.1| Two component heavy metal response transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q  I++  DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEE 223


>gi|187919464|ref|YP_001888495.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717902|gb|ACD19125.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  +  S+   LK  +++V +V D G  G +     E+  ++LDLGL  + G
Sbjct: 1   MRILLVEDDLQIGQSLLRALKDADYSVDWVRD-GVAGRDAMANAEYTVVLLDLGLPGLSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L++ R A  + PV IL+    ++ +V+GL  GADDY+ KPF+  EL+ARIRA++RR 
Sbjct: 60  IELLKSSRAAGNAVPVLILTARDDLDSRVQGLDVGADDYLLKPFDVPELLARIRAVLRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+A S +    LS++LD +T+   G    L+ +E+ ++     R  T L++E   + LY
Sbjct: 120 AGYASSRLGDESLSLDLDKRTLTCNGATTVLSAREFALMLAFLERPGTILSREQLEDRLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +DV I  +RKK      G + I  V G G+ +
Sbjct: 180 GWGKEVESNAVDVLIHSVRKKF-----GLSVIRNVRGLGWTV 216


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 75  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++ DA  V   G  I L+  E++++  L +     ++K   L+H++
Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237


>gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           MRILL+EDD +L   I   L+      Y  D   DG+  L    E   D +ILDLGL  +
Sbjct: 1   MRILLVEDDLSLGEGIRTALRRA---AYAVDWVHDGVSALMALQEQTMDLVILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV+R  R   + TP+ +LS      D+  G   GADDY+ KPF+  EL+AR RA++R
Sbjct: 58  DGIEVIRTARARAVDTPILVLSARERAADRALGPDVGADDYLGKPFDTNELLARTRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  Q  +  G L ++    +V   G  + LT +E+ ++ LL  ++   + +E    H
Sbjct: 118 RSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   ++     +DV + +LR+KLS A      I T+ G GY L E
Sbjct: 178 LYGWDEDVASNAVDVHVHQLRRKLSAAV-----IRTIRGIGYALDE 218


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 137/233 (58%), Gaps = 15/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + L+++D+K +   I+  L+ +++ V V   G++ +++ K  E+D ++LD+ L ++ G E
Sbjct: 4   KALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSK 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++S      +I   DL ++LD++ V  +   I+LT KE+ ++ELL+   +   ++E  L
Sbjct: 123 KSKSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLL 182

Query: 176 -----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                N L++  D   V+ +DV + +LR+K+        YI T WG GY  +E
Sbjct: 183 SIVWGNKLHEAGD---VRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 232


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  +++ L+ E +NV +   G +G+       +D IILDL L  + GF V
Sbjct: 5   ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           L+ +R  K S PV ILS    I+DKV GL  GADDY++KPF+ EEL+ARIR  +R++ + 
Sbjct: 65  LKEIR-KKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIKA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + + +   G   + +D  T EV   G +I LT KE+ +++ L +     LT+E  L +++
Sbjct: 124 NTKKISYDG---ITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  I+DV+I  LR K+      K  I+T+ G GY LR+
Sbjct: 181 GYNYIGETNIVDVYIRYLRSKIDEPFSNK-LIQTIRGVGYSLRK 223


>gi|229592122|ref|YP_002874241.1| two-component system transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens SBW25]
 gi|229363988|emb|CAY51531.1| two-component system, transcriptional regulatory protein PhoP,
           regulator of virulence determinants [Pseudomonas
           fluorescens SBW25]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  I+DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLLTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE +  +I+V + +LR+KL    GG   I+TV G GY+  E  +
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-GPGGFKPIDTVRGLGYLFNERCR 225


>gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 219

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   +   L    F +     GE+G        +DA+ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LRA R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G +++N D+ T    G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218


>gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224


>gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|260463371|ref|ZP_05811572.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259030961|gb|EEW32236.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+  ++ V +   GED        +   IILDL L  + G 
Sbjct: 1   MRLLLVEDNHELADWLGKTLRQAHYVVDIVHDGEDVEHALAAGDHALIILDLALPRMGGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV +L+  +S++ +V+GL  GADDY++KPF  EEL ARIR  +RR+ 
Sbjct: 61  EVLRMLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRVQLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL  + + +   + G  + LT +E+ ++E L ++   T++K      +YD
Sbjct: 121 DRTAPMITCGDLVFDTNTRLFSLAGETLALTPREHAVLEQLMVKAGRTVSKAALSAAIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I++++ ++RKKL    G +  I T+ G GY+LR++
Sbjct: 181 FETDADPSAIEIYVHRVRKKLE---GSRVQIATLRGLGYLLRQD 221


>gi|325689898|gb|EGD31902.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNEILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL      KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222


>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  + +S+E  L+   F+      G   +         A++LD+ +  + G  
Sbjct: 9   RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR      P+C+LS  SS+ D++ GL++GADDY++KPF   ELVAR+RA++RR+  
Sbjct: 69  VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 128

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S+   I  G L+V+L      + G RI LT +E+ ++ +L+      L++   L  +
Sbjct: 129 ATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 189 WGYDFAADTNVVDVFVTYLRKKL-EVDGAPRVIHTVRGVGFVLR 231


>gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+   + G  G+ L    ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S  +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGQSTPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223


>gi|309803189|ref|ZP_07697286.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d]
 gi|309806124|ref|ZP_07700143.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b]
 gi|308164697|gb|EFO66947.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d]
 gi|308167479|gb|EFO69639.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +A  +EL L+ E ++  V   G  G++L     +DAI+LDL L D+ G E+ R +R  K 
Sbjct: 1   MARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNGLEIARRVRQEK- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR------RSRGHA-- 123
           +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++R      R+ G A  
Sbjct: 60  TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQIEKRASGEAAG 119

Query: 124 -QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E  L  ++   
Sbjct: 120 VQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTREQLLKKIWGSD 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE
Sbjct: 180 SKIETNVVEVYVRYLRNKI-DVPGRSSYIKTVRGTGYMVRTDELDE 224


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + + V     GE+ + + K   +D I+LDL L  + G +
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-SVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++     ++  GDL ++ D++ V +    ++LT KE+ +++LL    N   ++E  LN
Sbjct: 123 PEKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYFQ 228


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA ++   L  E   V +   G  G+EL     FD I+LD+ L D+ GF
Sbjct: 1   MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV   LR    + P+ +++    I D++RGL+ GADDY++KPF  EEL+AR+ AI RR  
Sbjct: 61  EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120

Query: 119 -SRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            S+G        I  GDL  +    T+   G  + LT KE  ++ LL     T +++   
Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++   D+P   I++V++ +LR+KL   A G   +E V G GY L
Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLH--ALGPPVVENVRGFGYRL 225


>gi|148548790|ref|YP_001268892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|148512848|gb|ABQ79708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   ++  DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E A+
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERAE 226


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  ++L  + E + V VT  G  G++     ++D ++LD+ L  I GFE
Sbjct: 5   KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+    ++DKV GL  GADDY++KPF+ EEL AR+RA +R+ + 
Sbjct: 65  VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H  + ++   D++++L    V   G +I LT KE+ ++E L    N  LT+E  L  ++ 
Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                +  I+DV+I  LR K+ +    K  I T+ G GY L+E+ KDE
Sbjct: 184 YDYYGDTNIVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYTLKED-KDE 229


>gi|319947261|ref|ZP_08021494.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746503|gb|EFV98763.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELRDKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G+++VNL   +  V+G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KVNENTLSYGNVTVNLSTNSTLVEGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL      KN ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTDFAKN-LQTLRSVGYILKD 222


>gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 224

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+L
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223


>gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+     V   D G+DG+ L     FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    STPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     L  +   DL ++L +++V   G RI L  +E++++E L       +T+ M L  
Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+         I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFDTP-LIHTIRNAGYMLR 224


>gi|325921831|ref|ZP_08183648.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
 gi|325547708|gb|EGD18745.1| two component transcriptional regulator, winged helix family
           [Xanthomonas gardneri ATCC 19865]
          Length = 221

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA++I   ++ +++ +           +   + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLANAICAGVRQQSWTIDHVGSANAAKTVLVDHRYTAVLLDIGLPGESGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R    +TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RAI RRS+
Sbjct: 61  TVIRFMRGQYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  GD+ V+  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPLLTQGDVCVDPSSRKVTRDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL     G   I T++G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDELISTIYGQGYMV 216


>gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 14/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A  +   L+ E + V     G  G  L +  + D +ILDLGL D+ G +
Sbjct: 3   RVLLVEDDPAIAEPLTRALQREGYEVGAHVTG--GSALKQVNDSDMVILDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RRS G
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRRSGG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    DLS   D + +EV  HR       + LT KE++++ +L       + +E  
Sbjct: 121 E---ITEESDLSAQ-DVR-IEVSAHRAFQGTRELQLTAKEFELLRVLVREAGAVVEREAI 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++ G      K +D+ +  LR+KL + A   +YI TV G G+
Sbjct: 176 MREVWGGDPSGSTKTLDMHVSWLRRKLGDDANNPHYITTVRGMGF 220


>gi|332655173|ref|ZP_08420914.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
 gi|332516033|gb|EGJ45642.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 121/205 (59%), Gaps = 5/205 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+++L+ ++  +L+  N++      G++ +E  +   +DA+ILDL +  + G 
Sbjct: 1   MRILLAEDERSLSRAVIALLEKNNYSADAVYDGQEALEYLEAGNYDALILDLMMPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
            VLR LR      PV IL+  S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R ++
Sbjct: 61  TVLRTLREQGNPIPVLILTAKSEVDDKVLGLDTGANDYLTKPFSTQELMARIRAMTRSQT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G   S +  G+  + LD  T E+        L  KE+QM+E+L       +  E FL  
Sbjct: 121 GGQVTSRLTFGN--ITLDQATFELSSPAGSFRLANKEFQMMEMLMRNPRQIIPTERFLER 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS 202
           ++    E E+ ++ V+I  LRKKLS
Sbjct: 179 IWGYDSEVELSVVWVYISYLRKKLS 203


>gi|254164047|ref|YP_003047155.1| DNA-binding transcriptional regulator BasR [Escherichia coli B str.
           REL606]
 gi|253975948|gb|ACT41619.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli B str. REL606]
          Length = 222

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD  L   + L  ++E +    V    + E  +E      +  ++LDLGL D 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAG---HYSLVVLDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ K F  EEL ARIRA++R
Sbjct: 58  DGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKLFALEELHARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N 
Sbjct: 118 RHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  N ++
Sbjct: 178 IYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVANEEN 222


>gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 614

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +   LK  ++ V V   G+    L +  ++D ++LD+ L  + G 
Sbjct: 1   MKILLVEDDPLTRTVLTQTLKDHHYTVDVATDGQTAATLTQVSQYDLLLLDVVLPSLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+   S  D++ GL +GADDYI KP N E L+ARIRA+ RR +
Sbjct: 61  SLCQQLRFQGFQEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S+I   +L VNL+   V   G+ IHLT KEY ++EL  +      ++ + L  L+D
Sbjct: 121 NISSSVIHWENLQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D P  + +   I  LR+KL  AAG  + IETV+G GY LR+ +
Sbjct: 181 LADSPGEETVSTHIKCLRQKLK-AAGVPDPIETVYGLGYRLRKPS 224



 Score = 47.4 bits (111), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 2/131 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PGF 60
           IL+I+DD ALA  I L   + N  V +    +   E+      + I+LDL        GF
Sbjct: 365 ILIIDDDLALAERIRLEALAWNLRVEIATNLQIAREIIIQLSPNIILLDLNFETAREDGF 424

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  L   + + P+ + +G  S+ D+V+  + GA  ++ K    +E++  +  + ++  
Sbjct: 425 SLLEELGKTRPNLPIVVFTGRESLSDRVKVSRLGAKAFLHKSLPAQEILKTVTNVFKQHL 484

Query: 121 GHAQSLIVTGD 131
            H+++ ++  D
Sbjct: 485 DHSKNRVMIVD 495



 Score = 40.4 bits (93), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD A+   I  +L      V       +  +       D +ILDL + +  G +
Sbjct: 490 RVMIVDDDSAILSQIVDLLTPWGIEVITLKYSHNFWQELTTNNPDLLILDLEIPNFNGLD 549

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R      + P+  LS  +      +   +GADDY++K +  +ELV R   I+RR 
Sbjct: 550 LCKVVRHDPKWQNLPIIFLSIYNEENIIQQMFLAGADDYLNKTYEPQELVNR---ILRRL 606

Query: 120 RGHAQ 124
           +   Q
Sbjct: 607 KSKEQ 611


>gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S    L++  F V     G+    L     +D ++LD+ L D  GF
Sbjct: 1   MRVLLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDDDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +  ALR    +  V + +   ++ED++ GL  GADDY+ KP+   ELVAR+RA++RR  
Sbjct: 61  VLCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L+   DL ++   +     G  I LT KE+ ++E+L       LT+E    H +D
Sbjct: 121 HAAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +IDV+I +LR+K+ +A G    + TV G GY L
Sbjct: 181 DNFDPMSNVIDVYIARLRRKV-DADGDVPLLSTVRGAGYRL 220


>gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 249

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L   I   L+   + V     G   +   +    D +ILDLGL  + G 
Sbjct: 18  MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R  R   + TP+ +LS      D+  GL  GADDY+ KPF+  EL+AR RA++RRS 
Sbjct: 78  GVIRTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSA 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G L ++    +V   G  + LT +E+ ++ LL  ++   + +E    HLY 
Sbjct: 138 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++     +DV + +LR+KLS A      I T+ G GY L E
Sbjct: 198 WDEDVASNAVDVHVHQLRRKLSAAV-----IRTIRGIGYALDE 235


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 135/225 (60%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++   ++  +++  F   V   G++ I   +   +D I+LDL L ++ G E
Sbjct: 4   RILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR+ +++TP+ +L+      DKV GL+ GADDY++KPF+ +E++AR++AI+RRS+ 
Sbjct: 64  VCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQL 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H   ++  G+LS+  +    E+  + I  T KE++++  L+  K   ++++  L+ +
Sbjct: 124 SNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     + +I+DV I  LR K+   +    YI+TV G GY + E
Sbjct: 184 WDYDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEE 228


>gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +       ++AI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY +KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  QG  I LT  E++++          +++   + H+Y 
Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK++        I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKIA-----PKVIKTVRGLGYQL 216


>gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 243

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R +R+ + + P   L+   +I  ++ GL +G DDYI+KPF+ EE++AR+R ++RR  
Sbjct: 78  EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAG 137

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G    I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGYVLK 240


>gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
 gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
          Length = 228

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL EDD  +AH + L L++    V     GE G       EFD +I+D  +    G 
Sbjct: 3   LKILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRMMPKRDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   ++TPV ILS +  ++D+V GL++G DDY++KP+ + EL+AR+ A+ RRS 
Sbjct: 63  TMVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRST 122

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++    GDLS++  ++  E  G  I L  +EY++++ L       +T+ M L +++
Sbjct: 123 VQATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV + +LR K+ +    K  + TV G+GY L
Sbjct: 183 ELNFDPQTNVIDVHVSRLRSKI-DKGFDKPLLHTVRGKGYRL 223


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++++   +E +LK E + +   D GE  +E  +    D +ILD+ L  I G+E
Sbjct: 6   KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    I DK  G   GADDY+ KPF+  EL  R++A++RRS  
Sbjct: 66  VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             QS         I  G+L +N ++  V V+G  ++LT KE++++  ++   +   T+E 
Sbjct: 125 KEQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              H++      +   I VFI KLR+K+        YI+TVWG GY
Sbjct: 185 LFAHMWGDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGY 230


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF
Sbjct: 7   VRVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR+ 
Sbjct: 67  GMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA- 125

Query: 121 GHA---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           GH+   QS  VT  DL ++ D + V   G  + L+  E+ ++    +   T L+K   L 
Sbjct: 126 GHSDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILA 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           H+++     EV +++ ++  LR+K+         I T+ G GYV+RE
Sbjct: 186 HVWNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 230


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +E  LK E F V     G + +EL      D ++LDL L DI GFE
Sbjct: 5   KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ ++   P+ +LS      DK+ G + G DDY +KPF+  ELV RIRA++RRS+G
Sbjct: 65  VCRRIK-SRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKG 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++    ++   D+ +N   + V V G  ++LT KE+ ++ LL+   N   ++   L  
Sbjct: 124 CKEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D     +   + V I +LR+K+ N      +I+T+WG GY
Sbjct: 184 IWDSSYYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGY 225


>gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 219

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ +   I+  L    FNV + TD G+ G        +DA++LDL L +I G
Sbjct: 1   MRILLVEDDRLIGDGIKAGLSKMGFNVDWFTD-GKTGQAALYTAPYDAVVLDLTLPEIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS
Sbjct: 60  LEILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+S +  G + ++  +    ++G  + L  KE+ ++ELL       L ++     LY
Sbjct: 120 HGQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 230

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  +   L  E F V V   G DG+ L    ++D I+LD  L  I G 
Sbjct: 1   MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL ALR  K  TPV +L+    +ED+V+GLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 61  AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +   DL ++L  +     G RI LT KE+ ++ LL  R+   LT+   
Sbjct: 120 PSVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++D   + E  +++V I +LR KL      ++ + TV G GYVL
Sbjct: 180 ASQVWDMNFDSETNVVEVAIRRLRLKLDQPF-EQHLLHTVRGMGYVL 225


>gi|254518869|ref|ZP_05130925.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912618|gb|EEH97819.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA]
          Length = 194

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 113/190 (59%), Gaps = 2/190 (1%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           G  G+E     E+D +ILD+ L  + GFE+ R L+  K +TPV +LS   S+ DKV GLQ
Sbjct: 6   GRAGLEEALENEYDLVILDVMLPSMNGFEICRRLKRGK-NTPVIMLSAKDSVMDKVNGLQ 64

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152
            GADDYI KPF  EEL+ARI  + RR      S++   D+ +N  ++ V+     I+LT 
Sbjct: 65  IGADDYIPKPFAIEELLARIEVVFRRQDNLNDSIVKFKDILINRRSRIVKRNNEEINLTN 124

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           KEY+++ +L   K+  +T+E  L  ++    EPE  + DV+I  LR KL+N    + YI+
Sbjct: 125 KEYELLMILIDNKDRIVTREELLEKIWGYGYEPETNVTDVYIRYLRSKLNN-KNKEEYIQ 183

Query: 213 TVWGRGYVLR 222
           T+   GY++R
Sbjct: 184 TIRSVGYIMR 193


>gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|238920016|ref|YP_002933531.1| DNA-binding transcriptional activator CusR [Edwardsiella ictaluri
           93-146]
 gi|238869585|gb|ACR69296.1| transcriptional activator protein CopR [Edwardsiella ictaluri
           93-146]
          Length = 227

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +TD G  G  L     +D IILD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGKYLCKGLTEAGFVADLTDNGLTGYHLAMTASYDLIILDILLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRNANQGMPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  +S +   DLS++L ++ V   G RI LTGKE+ ++E     +   L + +  + ++
Sbjct: 121 THIPESQLHVADLSLDLLSRKVTRSGKRITLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +   IDV + +LR K+      K  I+TV G GY+L   A DE
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDFEPK-LIQTVRGVGYLL--EAPDE 226


>gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score =  135 bits (339), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224


>gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 232

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD   A  +   +    F V   D G DG+ L     +  IILD  +  + G  
Sbjct: 4   KILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR A I TPV ILS + + ED+V GL SGADDY+ KPF   EL+AR++ ++R  RG
Sbjct: 64  TLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLR--RG 121

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + S +VT     DL ++L ++ V+     + L  +E++++E      +  +T+ M L  
Sbjct: 122 GSGSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEG 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKL---SNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +IDV + +LR+KL     A G +  + TV G GY L
Sbjct: 182 VWDYHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRL 228


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V        L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKIDSQFETK-LIHTVRGTGYVLR 233


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+   L +E + V V   G +G+        D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            V  ALR A    PV +L+      D+  GL +GADDY++KPF+   LVAR++A++ RR 
Sbjct: 61  RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++  GDL V+   + V   G  + LT KE+ ++E L+ R +  + K   L H++
Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E +  I++V+I  LR+KL     G + I TV G GY L
Sbjct: 181 DFAYEGDPNIVEVYISALRRKL-----GADRILTVRGAGYRL 217


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 231

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ +NF V     GEDG++         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPVVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR    S  + +L+ +    DK++GL++GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +  ++++G+  ++L++K        ++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SSNTSSDILISGEFKIDLNSKIAYKNDKELNLTPKEFLLLKIFMENIGRSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231


>gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 272

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 50  RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 271


>gi|225420338|ref|ZP_03762641.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme
           DSM 15981]
 gi|225041024|gb|EEG51270.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K +   IE +L++  +       G DGI L    +   ++LDLGL DI G EV
Sbjct: 7   IIIIEDEKNICSFIETILEAHGYVTSTATNGNDGIALIASTKPSVVLLDLGLPDIDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R+   + P+ ++S  +  + KV  L  GADDY++KPF   EL+ARIR  +R S+  
Sbjct: 67  IRRVRLWS-TVPIIVISARTQEKSKVAALDQGADDYLTKPFGTSELMARIRTALRHSQTG 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q L   GDL ++ + + V+V+   +HLT  EY+++ LL+      LT +  +N +
Sbjct: 126 ASAKSQPLYHVGDLMIDFERRLVKVKDQDVHLTQIEYKLVSLLAQNAGRVLTYDYIINEI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +   +I+ V +  +R+KL        YI T  G GY +RE
Sbjct: 186 WGPYADSNNQILRVNMAHIRRKLEANPAEPQYIYTEIGVGYRMRE 230


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 133/227 (58%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD AL   +E  L +E F+V V + G+ G +     +FD  +LD+ +  + G E
Sbjct: 4   KILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            LR +R A    PV +L+      ++V GL+SGADDY++KP    EL+ARIRA++RRS+ 
Sbjct: 64  TLRIIRQAS-HIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSKI 122

Query: 121 ---GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
              G  Q+L IV G L++    + VEV G  I+LT  E+ ++E+L+      + KE + L
Sbjct: 123 TKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLAL 182

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  GR      + +DV +  +R+K+  ++ G +YI+TV+  GY L
Sbjct: 183 QAM--GRTLVRFDRSVDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227


>gi|21233316|ref|NP_639233.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770278|ref|YP_245040.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115147|gb|AAM43115.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575610|gb|AAY51020.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 221

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA +I   ++ +++ +               + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLADAIYDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLPGDSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R    +TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RAI RRS+
Sbjct: 61  TVIRYMRGHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G++SV+  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL     G   I T++G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDEVISTIYGQGYMI 216


>gi|296447623|ref|ZP_06889543.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254888|gb|EFH01995.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 221

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LLIEDD+    ++   L+     V     G DG    +  E   ++LD+GL DI GF
Sbjct: 1   MRALLIEDDEMFGKALVRGLRDNAMTVDWVRNGRDGYAALEQAEHTIVLLDIGLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A R A  S P+ I++    +E  V GL  GADDYI KPF+   L+ARIRA++RR  
Sbjct: 61  DVLKAARKAGGSVPILIITARDGVESTVDGLDLGADDYIVKPFSLCALLARIRAVLRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A SL+V+ ++ ++   +    +G +  LT +EY ++  L  R    L++      +Y 
Sbjct: 121 GQAHSLLVSNEIILDPSTRVAIFRGVKGVLTAREYSLLYTLMKRPGAILSRSQIEERIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E +   +DV I  LRKK      GK+ I  V+G G+++ ++ 
Sbjct: 181 WGEEVQSNAVDVLIHVLRKKF-----GKDIIRNVYGAGWMVTKDG 220


>gi|56540659|gb|AAV92783.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  135 bits (339), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+      + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 133/232 (57%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+   F V   + GE+ IE       + IILDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K+ TP+ +L+      DK+ GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S G  +++  IV GDL +  D       G R+ LT KE++++  L+  K   LT++  L+
Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +++     + +I+DV I  LR+K+        YI+T+ G GY L E  +++
Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEEPKRND 235


>gi|325694299|gb|EGD36213.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKDLRAKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GD++VNL   +    G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFNENTLSYGDVTVNLSTNSTLKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL      KN + T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTTFAKN-LHTLRSVGYILKD 222


>gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 220

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  IEL L  EN+ V + + G +G++     E+D  +LDL L  + G E
Sbjct: 3   KILIVEDEQNLARFIELELIHENYEVDIENDGAEGLKTALSKEYDLYLLDLMLPHMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRA +RR   
Sbjct: 63  ICRKIREVK-STPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRRQ-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  I    + ++  A  V + G  + LT  EY +++LL+   N  + +E  LNH++  
Sbjct: 120 PAKDTITIKGIEIDKAAFRVTIDGQELELTKTEYDLLQLLTENLNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E E  ++DV+I  LR KL      +  IETV G GYV+R+
Sbjct: 180 DSEVETNVVDVYIRYLRNKLK-PFNKEKVIETVRGVGYVIRQ 220


>gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36]
 gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++  L    FNV + D G DG+      ++D ++LD+ L  + G+
Sbjct: 1   MKILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR+     PV +L+    + D+V+GL+ GADDY+SKPF+  EL+ARI   + R +
Sbjct: 61  DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQL-RDK 119

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S I+T GDL  N   + V+  G  I LT KE+ ++E L  R+   L+K    +H++
Sbjct: 120 GSTHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  II+V I +LR K+         I TV G GYVL
Sbjct: 180 DINFDSDTNIIEVAIKRLRNKIDQGFSSP-LIHTVRGMGYVL 220


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E F+  +   GED +   + YE + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R AK   P+ +LS    I DKV GL+ GADDYI KPF+ +E++AR+RA++RR   
Sbjct: 66  VCREIR-AKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      +    L++NL   +V   G+ + +  KE +++  L+   N   T+E 
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+KL +    K  + TVWG GY
Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPQWK--LGTVWGIGY 228


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E F   +   GE+ ++L   +E + ++LDL L  I G++
Sbjct: 6   RILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A    P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELR-ASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +   DL VNL   +V   GH I +  KE +++  L+   N   T
Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L+H++      + + +DV I +LR+K+ +    K  + TVWG GY
Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--DKWALTTVWGIGY 231


>gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62
           +++ED+ A+   + L LK E + V   + GE  IEL     +    ILD+ L  I GFEV
Sbjct: 1   MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           L+ LR       V +L+  +  +DKV GL+ GADDYISKPF+  ELVARIR+++RR +  
Sbjct: 61  LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRRLTSN 120

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H    Q ++ +G  ++NL  +        I LT KE++++EL       +L+++  LN +
Sbjct: 121 HIEEKQDVLKSGPFTLNLSDRKFYKGDEEIELTPKEFEILELFLKNAKKSLSRDQILNEI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      ++K++DV + ++RKK+ +      +++TVWG GY   E+ 
Sbjct: 181 WGKNYFGDLKVVDVNMRRIRKKIEDDPAEPRFLKTVWGYGYRWEEDG 227


>gi|209517611|ref|ZP_03266449.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501907|gb|EEA01925.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 240

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   L+  +F V     G  G+      +FDA++LD  L D+ G  
Sbjct: 16  RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR     TPV ILS +S+++++VRGL++G DDY++KPF+  EL AR+ A++RR   
Sbjct: 76  ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+ +++ GDL +++    V   G  I L  +EY++++ L L     +T+ M    +++
Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +ID+ I +LR+K+S        I TV   GYVLR
Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVLR 237


>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
 gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A ++ + LK+   +V     G D +  C     D ++LDLGL D+ G +
Sbjct: 4   RVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLDGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR LR +  S PV +LS     +DKV  L  GADDY++KPF  EEL+AR+RA +RR  +
Sbjct: 64  VLRQLRQSS-SVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGGA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + +VT D S  LD  T E  G    +HLT  E++++  L+  +   +  E  L  
Sbjct: 123 EPSGPAPVVTADFS--LDFTTYEASGPTGAVHLTPTEWRLLAELARHRGRVVPHEQLLRA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  +   E   + V+  +LR+KL        +I T  G GYVLR
Sbjct: 181 VWGPQYGRESNYLRVYCGQLRRKLEPEPSLPRWIVTEPGIGYVLR 225


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EHEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228


>gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 12/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD   A +IE ++K    +  N+     G  G+ L    ++D IILD  L  +
Sbjct: 1   MKILMVEDD---ATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             RG +Q  +     G L++ L  + V + G  I L  KE+Q+++ L    N  +++ + 
Sbjct: 118 --RGESQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224


>gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 227

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+ LA  +  ML  E++ + V   GE+G++L     ++  I+D  L    G 
Sbjct: 1   MRLLIIEDDQRLARLMRRMLAEEHYTIDVAHDGEEGLDLALQGVYEIAIVDWMLPSRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + RA+R A+    + +L+    +ED+V+GL SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  TICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRFT 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +  G++ ++L + T       + LT  E+ ++E L      +L+++  L+++
Sbjct: 121 PSGSDTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQILDYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + ++ ++DV+I  LR+KL NA G  + I TV G GY L
Sbjct: 181 WSYERDVQIALVDVYISYLRRKL-NAPGESDPIMTVRGVGYRL 222


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I   L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S GH +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   ++     
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I K+R K+   +    YI+TVWG GY
Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 340


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 132/226 (58%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+++A  +  +L  E++ V V   G  G +L   + +D IILD+ L ++ G 
Sbjct: 1   MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR  + + PV  ++ +    +K+ GL +GADDYI+KPF  EEL+AR+RA++RR +
Sbjct: 61  KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+++T      L + ++++ +  + +++ LT KE+ M+EL         ++E  ++
Sbjct: 121 T---SVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIID 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +L+   D P  + +   +  LR+KL       + IETV+G GY L+
Sbjct: 178 NLWSYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLK 223



 Score = 42.0 bits (97), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 4/132 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD  L  +++  L  EN+ +   D   +  +  +    D ++LD+ +    G E
Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R   A    P+   +  +    +    ++G D+ I K  +  +L+A +   ++RS
Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659

Query: 120 RGHAQSLIVTGD 131
             + Q +I T +
Sbjct: 660 --YLQQVIATAN 669


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 135/222 (60%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ +++  +N  V   G +  E+   Y+ D ++LD+ L  + G +
Sbjct: 7   KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  +  TPV +L+      DKV GL+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIR-KEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL++++++ TV  +G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV + +LR+KL    GG N+ IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++ RR+
Sbjct: 61  RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     + V G L+V+  A+ V  +G  + LT KE+ ++E L LR    + K   L+H++
Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL     G   I TV G GY L
Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAERIRTVRGAGYRL 217


>gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
 gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score =  134 bits (338), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   I   L+ + F V +V D GE      +   + A ILDLGL  + G
Sbjct: 1   MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRD-GEAAWRELRTDAYVAAILDLGLPRMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR +R A I+ P+ +L+   +I D+VRGL  GADDYI KP +  EL AR+RA+VRR+
Sbjct: 60  VDVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH    +    + +   ++TV   G  + L+ +E+ ++  L L     L++E     LY
Sbjct: 120 HGHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHALMLNAGRVLSREQLEQCLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226
               E     ++V I  LR KL     G + I TV G GY+L R+NA+
Sbjct: 180 PWGQEVGSNSVEVHIHHLRVKL-----GSDLIVTVRGVGYMLPRDNAE 222


>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 224

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-----CKFYEFDAIILDLGLT 55
           M+IL+IED+K L  +++  L+ E    YV DL  DG E        F  +D +ILD+ L 
Sbjct: 1   MKILIIEDEKKLGTALKKGLEKEG---YVVDLAFDGEEAKYIIENNFEGYDLVILDIMLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G  + + LR      P+ +L+    +EDK+ GL+SGADDY+ KPF+ EEL+ARIRA+
Sbjct: 58  KIDGISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR +    +++   D+S++  +K V      I LT KE+ ++E L    N  ++KE  +
Sbjct: 118 LRRPKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQII 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +H++    +    +++  I  LRKKL      +N IET+ G GY ++E
Sbjct: 178 SHVWGYESDTLSNVVEAHIKNLRKKLERKR-DENIIETIRGMGYRIKE 224


>gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8]
 gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter
           xylosoxidans A8]
          Length = 219

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELC-KFYEFDAIILDLGLTDI 57
           MRILL+EDD  +  S+   L++E+   Y  D  +DG   EL  +   +D I+LDLGL   
Sbjct: 1   MRILLVEDDLMIGESVLDFLRAEH---YAVDWVKDGNAAELALRTDTYDLILLDLGLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +LR LR  K  TPV I +   ++ D++ GL +GADDY+ KP++ +EL+AR+RA++R
Sbjct: 58  DGLSLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G A+ +     ++++  +    V G  + LT +E+ ++E L  R     ++      
Sbjct: 118 RSAGRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY  ++      ++V+I  LRKKL     G N I+ V G GYV+
Sbjct: 178 LYSWKESISSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ +   +   L  E F V     GE+G+ L   ++ D ++LD+ +    G+E
Sbjct: 4   KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  S P+ +L+    + D+V+GL  GADDY+ KPF  EEL+ARIRA++RRSR 
Sbjct: 64  VCRRLR-AGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +V  DL+++   + V   G  I LT +E++++ L        LT++  ++ ++
Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  +++V++  LR+KL    G K  I TV G GYVL+E
Sbjct: 183 GIDYGGESNVLEVYVGMLRQKLEE-GGEKRIIHTVRGVGYVLKE 225


>gi|299065128|emb|CBJ36292.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 224

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LA  +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADSLLLTQHYDVVLLDLQLPSLSGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRR+ 
Sbjct: 61  AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+   + I+++I +LRKKL ++A     I T+ G GY+LR+
Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220


>gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 223

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD  L   + L ++SE +    V+   E  + L   + +  I+LDLGL D   
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNH-YSLIVLDLGLPDEDR 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR 
Sbjct: 60  LHFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  G+L +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y
Sbjct: 120 NNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +EP    ++V I  LR+K+     GK+ I TV G GY+L  N   E
Sbjct: 180 SWDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223


>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  SI  +L  E F V     GEDG+ L     +D I+LD+ L  I GF
Sbjct: 1   MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRS- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G+  +        + L  K  ++Q  G  I LT K+Y+++E L       L +E   + +
Sbjct: 119 GNLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +  V I++V++  LRKKL    G +  I+TV G GY+L+E 
Sbjct: 179 WGFDSDTTVAIVEVYVHHLRKKLE-PFGYQKDIQTVRGIGYMLKEQ 223


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 23  VLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 83  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHT 142

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q    +  G ++++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 143 EQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  + DVFI  LR+KL    G    I TV G GYVLRE
Sbjct: 203 YDFDVDTNVADVFISYLRRKLER-DGVPRVIHTVRGIGYVLRE 244


>gi|300689749|ref|YP_003750744.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07]
 gi|299076809|emb|CBJ49419.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07]
          Length = 221

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  +  ++E  L+   + V +V D G+  I++     +D ++LDLGL    G
Sbjct: 1   MRVLLIEDDPMIGAAVEAALRDAAYAVDWVRD-GQTAIDVTGHQHYDVLLLDLGLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR      PV IL+   ++ ++VRGL  GADDY+ KPF   EL+AR+RA++RR 
Sbjct: 60  HAVLRTLRARGNPVPVLILTARDAVGERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A  ++  G LS  LD  T EV+   G  + L+G+E+ +++ L LR    L++     
Sbjct: 120 GGAASPVLSNGVLS--LDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRSELEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +Y    E     ++  I  LRKKL     G + I+ V G G+++
Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GADSIKNVRGVGWMV 217


>gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 249

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+  A     ++K+     +V D   DG++   L +  ++D +I+D  L  +
Sbjct: 19  MRLLIIEDDREAA---AYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRMLPKL 75

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R+LR   ++TP  ILS +  ++D+V+GL++G DDY+ KP+   EL+AR  A+ R
Sbjct: 76  DGLSLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALAR 135

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  G     ++    GDL ++  +  V   G  I L  +E++++E L       +T+ M 
Sbjct: 136 RQAGSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTML 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L H++D   +P+  +IDV + +LR KL         I TV G GYVLR
Sbjct: 196 LEHVWDYHFDPQTNVIDVHVSRLRSKLDKGFPSP-IIHTVRGAGYVLR 242


>gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 237

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL EDD  LA  +    +S   + Y  D  ++G+E        +FD +ILDLGL  +
Sbjct: 1   MRILLAEDDSVLADGLT---RSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR      PV IL+   S+E +V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   ++I  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEV---GGVRIATVRGLGYCL 218


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E F+  +   GED +   + YE + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R AK   P+ +LS    I DKV GL+ GADDYI KPF+ +E++AR+RA++RR   
Sbjct: 66  VCREIR-AKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      +    L++NL   +V   G+ + +  KE +++  L+   N   T+E 
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+KL +    K  + TVWG GY
Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPHWK--LGTVWGIGY 228


>gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 227

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +    ++
Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYEPK-LIQTVRGVGYML 221


>gi|194367131|ref|YP_002029741.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349935|gb|ACF53058.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 231

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLSGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+++I +LRKKL+ A      I TV G GY+L
Sbjct: 181 FDDEAGPNAIELYIGRLRKKLAAA---PLRITTVRGVGYLL 218


>gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
 gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum
           WAL-14163]
 gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED++AL  +I   L+ + ++V     GE  +EL     +D ++LDL L    G 
Sbjct: 1   MHLLVIEDERALCETIVRSLRRQAYSVDCCYDGEKAVELLGVERYDLVLLDLNLPGKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     T V ILS    +EDKV GL +GA+DY++KPF+  EL ARIR++  R  
Sbjct: 61  TVLRTLRQTDRETKVLILSARGEVEDKVEGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L++ G+L+ +  ++T  V G  + LT KE  ++E L + +   +++E  ++H++D
Sbjct: 121 TQQDVLLICGELTFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     I V I  LRKKL  AA G + I    G GY++
Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGYLM 220


>gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori]
 gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori]
          Length = 222

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G L++N+    V + G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYML 216


>gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E +     + GE+ +     +  D ++LDL L D+ GF
Sbjct: 37  VRLLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLMLPDLDGF 96

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +    PV  L+   ++ D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 97  GVLDRLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 156

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +S++   DL+++ D + V      + LT  EY+++  L  +  T LTK   L+H+
Sbjct: 157 GPGFQRSVLRVADLTMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 216

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        ++++ + +LR+KL +   G+  I TV G GYV+R+ A+
Sbjct: 217 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVVRQAAE 262


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I   L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S GH +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   ++     
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I K+R K+   +    YI+TVWG GY
Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 340


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 121/223 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ +A ++   L  +++ V +   GE G EL + + +D ++LD+ L  + G 
Sbjct: 1   MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R +R   +  PV +L+   +  +KV GL +GADDY+ KP   EE+ ARIRA++RR  
Sbjct: 61  AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++   DL +N +   V  Q   I LT KEY ++EL    K    ++   L HL+ 
Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   +   I  LR KL  A    + I+TV+G GY L++
Sbjct: 181 YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQ 223


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L +  F+V     G   +      + + ++LDLGL D+ GFE
Sbjct: 3   RVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VL  LR    + PV +LS  +   +KV  L +GADDY++KPF  +EL+AR+RA VR   R
Sbjct: 63  VLAGLR-GWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++G  + ++VT   +V+L AK V   G  +HLT  E+ M+ELL   +   ++++  L+ +
Sbjct: 122 TQGEGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E   + V++ +LR+KL        ++ T  G GY
Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPAHPRHLITEAGMGY 222


>gi|239927334|ref|ZP_04684287.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 226

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V V   G  G+ + +  E+  ++LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDVAHDGRQGLWMARTGEYALVVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRREGNAVPILVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TAAPPVLAVGDLSLDVAGRVCRRAGVRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  +  LRKK+ +AA  +  ++TV G GY L
Sbjct: 181 DEAQDP--NLVEARVSALRKKV-DAAFHRKSLQTVRGTGYRL 219


>gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
 gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
          Length = 227

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221


>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 222

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  IE  L+S+ F   V         +     FD +ILDLGL    G +
Sbjct: 3   RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV IL+    I+DKV G ++GADDY++KPF  EEL+ R++A +R+S G
Sbjct: 63  VLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I +G++ ++L ++ V++    I L  +E+ + E         L++E  L+ +
Sbjct: 123 SQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LRKKL N     + IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGN-----DLIETVRGMGYRLR 221


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A+++  +L ++N+ V V   G+   +  + Y++D I+LD+ L  + G 
Sbjct: 1   MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R   +  P+ +++G +S  +K  GL +GADDY+ KPF+ EELVARIRA++RR  
Sbjct: 61  SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  ++ +G L   LD  + E    R  + LT KE+ ++EL         +  M L HL
Sbjct: 121 VTSPPVLESGKL--RLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +   D P+ + +   I  LR+KL       + +ETV+G GY L+   +D+
Sbjct: 179 WSYEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEEDK 228



 Score = 41.6 bits (96), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++ +L          +      E  +    D +ILD+ L  I G E
Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + R +R     +  P+  L+  S  E   +    GADD++SKP    ELV RI
Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRI 509


>gi|170702575|ref|ZP_02893449.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170132509|gb|EDT00963.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 232

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L IEDD+  AH I   L +   +V     G DGI      E+DA+ LD  L  + G  +
Sbjct: 11  VLTIEDDEITAHEIIGELSNRGHSVEWVSNGRDGIAQAIGGEYDAVTLDRMLPGVDGLSI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  +R   + TPV +LS +S +++++RGL++G DDY+ KPF+ EE+  R+ A++RR+R  
Sbjct: 71  LMTMRSIGVRTPVLMLSALSDVDERIRGLRAGGDDYLIKPFDLEEMALRLEALMRRNRAA 130

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G LS++L  + V   G  I L   E++++E +      T+T+ M    ++
Sbjct: 131 PAQPEAKLSVGPLSLDLITRKVHRDGTEIALLPTEFRVLEFMMRHAGQTITRTMLFEAVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   +IDV + +LRKKL +  G    I+T+ G GY+L
Sbjct: 191 GYHFDPGTNLIDVHMGRLRKKL-DPPGETPMIQTIRGTGYML 231


>gi|198283804|ref|YP_002220125.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665314|ref|YP_002426436.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248325|gb|ACH83918.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517527|gb|ACK78113.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 220

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ +  +I + L+   + V +V D GE  +      E  AI LDLGL  + G
Sbjct: 1   MRILLVEDDRMIGEAISVALRDAAYAVDWVRD-GETALRAIANQEHQAIFLDLGLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ +R    S P+ I+S   ++ D+V GL  GADDY+ KPF   EL+AR+RAI+RR 
Sbjct: 60  CTLLQRVRAGGNSLPIIIISARDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    ++  G L ++L   T ++    + LT KE+ +++ L LR  + L++      LY
Sbjct: 120 GGQGSPVLGNGSLQLDLSTHTAQIGELSVLLTNKEFALLQALLLRPGSILSRAQLEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  E   ID  I  LRKKL     G   I  V G G+++
Sbjct: 180 GWDEGVESNSIDFLIHGLRKKL-----GAKVIRNVRGAGWMI 216


>gi|238028823|ref|YP_002913054.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237878017|gb|ACR30350.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 224

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL IEDD  +A SI   L++E   V +   G DGI      ++DA+ LD  L D+ G  
Sbjct: 3   KILTIEDDVLIADSITRQLQAEGHTVDLARTGRDGIAKVMAGDYDAVTLDRMLPDLDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L  +R   + TPV ++S MS ++ ++ GL++G DDY+ KPF+  E+VAR+  ++RR   
Sbjct: 63  ILATMRGVGLDTPVLVMSAMSEVDQRIAGLRAGGDDYLVKPFSLAEMVARLEVLMRRRPR 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA +++  G + ++L  +   +    + L   E++++E +       LT+ M    ++
Sbjct: 123 SAHADTVLRAGGIELDLVRRRASLGARELQLLPTEFRVLEFMMRHAGRVLTRTMIFEGVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R +P   +IDV + +LR+K+ N  G    I T+ G GY+L
Sbjct: 183 GCRFDPGTNLIDVHVGRLRRKI-NRPGEAPLIRTIRGAGYLL 223


>gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
          Length = 219

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  +E     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ ++  K   PV IL+   SI+DKV+GL  GADDY++KPF+  EL AR+R   RR  
Sbjct: 61  QVLKYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRIN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD+ ++  A TV++ G  + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK  +     ++I+T+ G GYV+
Sbjct: 181 WGEEVGSNAIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216


>gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 227

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR +K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L  E   V     G  G E     E   ++LD+ L  I GFE
Sbjct: 3   RILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR +R A  S PV +L+      D++ GL+ GADDY+SKPFN  ELVARIRAI RR++ 
Sbjct: 63  VLRRIR-AGSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRRAQP 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G A   +V GD+ V+  A  V  +GH + LT  E+ M+E+L       +++E
Sbjct: 122 SVERETGTGKAVERVVVGDVEVDPGAHIVLQRGHPVDLTSVEFTMLEVLLRASGQVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                    R  P  + IDV I  LR+KL +  G    I+TV G GY+
Sbjct: 182 DLAKQALGRRLSPYDRSIDVHISSLRRKLGHQLGDTERIKTVRGMGYL 229


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL   I + LK E + V     G   +      +F   +LDLGL  + G 
Sbjct: 1   MRILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+ +EL ARIRA++RRS 
Sbjct: 61  QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ ++  G++ ++   + V  +G  + L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ++V I  LR+KL         I TV G GY+
Sbjct: 181 WGEEAESNTLEVHIHHLRRKLF-----PELIRTVRGVGYL 215


>gi|54308194|ref|YP_129214.1| putative transcriptionalregulator [Photobacterium profundum SS9]
 gi|46912622|emb|CAG19412.1| Putative transcriptionalregulator [Photobacterium profundum SS9]
          Length = 225

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++L L   +F     + G DG+      E+D I+LD+ L D+ G+
Sbjct: 1   MKILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  ++    + P+ +L+   S+ED+V+GLQ GADDY+ KPF   EL+ARI+  VR++ 
Sbjct: 61  KILTQIKTHYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++ +  GDL V+L  + V      I LT KE+ ++ELL  R+   L+K    + ++
Sbjct: 121 NVAAKTTLTIGDLHVDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LRKK+ +    K  I T+ G GYV+
Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKVDDPFEFK-LIHTLRGMGYVM 221


>gi|92116579|ref|YP_576308.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799473|gb|ABE61848.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 220

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   LK   + V     G+  IE  +   +D  +LDLGL    G 
Sbjct: 1   MRILLVEDDQMVGAAVTQALKDAAYAVDWVKDGQTAIEAARAETYDLTLLDLGLPSRDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRA R      PV I++   +I+D++ GL  GADDY+ KPF   EL+AR+RAI+RR  
Sbjct: 61  EVLRAFRTMNRQLPVIIVTARDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAILRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +++  G  +++LD  T EV   G    LT +E+ +++ L LR  T L++     H+
Sbjct: 121 SGNAAILSNG--TISLDPATHEVAHGGGAARLTAREFALLQALMLRPGTILSRVDLERHI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           Y   +E E   ++  I  +RKKL     G + I  V G G+++     D +C
Sbjct: 179 YGWNEEVESNAVEFLIHAIRKKL-----GASSIRNVRGVGWMV-----DRSC 220


>gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis
           z3032]
 gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter
           turicensis z3032]
          Length = 234

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 9   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 69  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 189 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 229


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ +E+ K   +D I+LDL L  + GFE
Sbjct: 4   KILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +     +    + G+L ++ + + V +  + I+LT KE+ ++ELL   +N   ++E  L+
Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G D P +V+ +DV I +LR+K+    G   YI T WG GY  +
Sbjct: 183 IIW-GSDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYFK 228


>gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
 gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
          Length = 236

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  L+  +   L+   + V     G D         +D +ILDLGL  + G 
Sbjct: 1   MKILLAEDDSLLSEGLSQSLRQAGYAVDCMFKGSDADTALTTMNYDILILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+E +V+GL +GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G L+ +   +   +    + L+ +E  ++E+L  R    ++KE F++HL +
Sbjct: 121 GGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAKDET 229
             +E     I+V+I +LRKK+  N       I TV G GY L +  + E 
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEVNGV----RIATVRGLGYCLEKFVEKEA 226


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  134 bits (338), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ ENF +   D GE  +E+    E+D I+LDL +  + G +
Sbjct: 6   RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGMQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   LR  K +TP+ +L+      ++V G + GADDYI KPF+  E+V R++AI+RR+  
Sbjct: 66  VCEELRKTK-ATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V V+   ++LT KEY+++  L+ + +   ++E 
Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENA 225
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY    N 
Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENNP 237


>gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L  SI   L+ + + V     G+D  ++     +D IILDL L  + G 
Sbjct: 1   MRILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR++R     T + ILS    ++DK+ GL +GA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 61  DVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRRV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L+++  A+TV  +G    LT KE+ ++E L L ++  + +E  + H++D
Sbjct: 121 VQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     I V I  LRKKL    G    +  V G+GY++ E
Sbjct: 181 ASVDSFSNSIRVHISALRKKLKAVLGYDPIVNRV-GQGYIIGE 222


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V V   G +G++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK + + I + L++E  +    +   + ++L +  EFD IILD+ + ++ G E 
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR + +
Sbjct: 65  CMKIREER-NLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKY 123

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               I T      GDL+VN D + V V+G  + LT KE+ ++ELLS  K   ++ E    
Sbjct: 124 NTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 184 AVWKEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGY 226


>gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens]
 gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2]
 gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance)
           [Serratia marcescens]
 gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1]
 gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894]
 gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2]
 gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 226

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221


>gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 227

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELNSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|268680656|ref|YP_003305087.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618687|gb|ACZ13052.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +A  ++  L+ E F+V + D GED + L +   +D IILDL +  + G 
Sbjct: 1   MKILIVEDDEGIASFLKQGLEEELFSVELCDNGEDALYLAQMNPYDMIILDLMIKGVQGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR  K+ TP+ +LS  S+I DKV  L  GADDY++KPF+ EEL+ARI   +R+ +
Sbjct: 61  VVCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLRK-Q 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+   DL +N   K+V      I LT KEY ++E L   K   + ++M    L+ 
Sbjct: 120 NDKEPLLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQLFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225
                   ++ V++ +LR K+      KN+    I+T    GY L ENA
Sbjct: 180 SEQSINSNMVSVYMYRLRSKID-----KNFELKLIKTHRNLGYTLNENA 223


>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
 gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
          Length = 231

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y+   G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227


>gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 16/228 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+ L   + FD ++LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTLTLLRYHQFEVEWVNNGVDGLSLLAKHNFDLVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  + + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++R  RG
Sbjct: 63  VLRQIR-QRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLR--RG 119

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           HA++        L+  GDL ++++      +G +I L+ +E+ ++  L    N   +K  
Sbjct: 120 HAETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKAN 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + LYD   E     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 180 LEDKLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|218282706|ref|ZP_03488913.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
 gi|218216407|gb|EEC89945.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
          Length = 237

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IEDD A+ + I   L+ EN+   +    + GI     Y  D ++LDLGL D+ G 
Sbjct: 4   VQILVIEDDVAVGNLITTTLEMENYQFRLAKTAKQGIMNVLSYNPDIMLLDLGLPDMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R +  + P+ ++S  S  +DKV+ L  GADDY++KPF+ +EL+AR+R  +RR  
Sbjct: 64  EVIKKVR-SWSNIPIIVVSARSEDQDKVKALDLGADDYLTKPFSVDELLARLRVTIRRLN 122

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S+   GDL++N     V   GH IHLT  EY+++ +L+   +  LT    +
Sbjct: 123 NSQTISVNESVYENGDLTINYAQGCVYENGHEIHLTPIEYKLLCVLAKNTDKVLTHNYIM 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228
             ++      E   + VF+  LRKK+        YI+T  G GY +L +  K E
Sbjct: 183 QEVWGSVQGTETPSLRVFMATLRKKIEPDTSNPKYIQTHVGVGYRMLNQTEKKE 236


>gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+  +  +   LK     V     G DG+ L     +D++I+D  L  + G 
Sbjct: 1   MRILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRMLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +++ +R A  +TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI A+ RR S
Sbjct: 61  TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+      +  I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDF-DQALIHTVRGAGYTLR 222


>gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato K40]
 gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 227

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL+ G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|56540665|gb|AAV92786.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQTWKDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 223

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++L++EDD  L   + L ++SE +    VT   E  + L   + +  ++LDLGL D  G
Sbjct: 1   MKVLVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSH-YSLMVLDLGLPDEDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L  +R  K S PV IL+   ++ D++ GL +GADDY+ KPF  EEL AR+RA++RR 
Sbjct: 60  LDFLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  G++ +N+  + V ++  ++ LT KEY ++  L  +  + + +E+  N +Y
Sbjct: 120 NNQGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 180 SWDNEPSTNTLEVHIHNLRDKI-----GKSRIRTVRGFGYML 216


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R++++EDD+A+A+ ++  L+ E + V     G++G+E  K YEF  +++D+ L ++ GF 
Sbjct: 4   RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV I+S   +  DKV+GL+ GADDYI+KPF+  E+ ARI A +RR + 
Sbjct: 64  LCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYKK 123

Query: 122 HAQSLIVTGDLSVN------LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +   V G L          + K V V    I +T KE++++ L++   N   +KE   
Sbjct: 124 VDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEELY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H+++  D      + V I +LR+K+ +++    +I+TVWG GY
Sbjct: 184 HHIWESMDVEGNNTVTVHIKELREKIGDSSKNPTFIKTVWGVGY 227


>gi|256827469|ref|YP_003151428.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583612|gb|ACU94746.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 225

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ L+  I   L+  N+ V+    GE+G    K   +D I+LDL L  + G+
Sbjct: 1   MDILIVEDNRPLSQVIRQCLEP-NYVVHQAFDGEEGYFYAKEGIYDLIVLDLMLPGMNGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  ++ TPV IL+ +  I++++RG ++GADD+++KPF K+EL+ RI AI+RRS 
Sbjct: 60  EVLEWLRADRVMTPVLILTALRGIDERLRGFRAGADDFLTKPFAKDELLLRIEAILRRSM 119

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +    +  DL +  D+ T  +QG  I L G++Y ++E L  R+   ++K    + ++
Sbjct: 120 NLVEKREFSFKDLVLYPDSHTACIQGEEIELKGRQYDVLEFLVSRQGQLISKSQIFDKVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +    +++V++  +RK+L    G   Y+ T+ G GY+  ++ +
Sbjct: 180 GFMSDTSTNVVEVYMSAIRKQL-KPYGYDIYVRTIRGAGYLFGDDGE 225


>gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
 gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
          Length = 227

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +   + Y    I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R AK STP+ +LS    + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIR-AKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 121 ------GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++  V  D L++NL   +V   GH + +  KE +++  L+   N   T+E 
Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGY 228


>gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    F   V   G DG+ L     +D I+LD  L    G+
Sbjct: 18  MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A+ +TPV +L+    + D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 78  SVLSELR-ARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V++  +  E  G R+ LT KE+ ++ LLS R    L++ +    ++D
Sbjct: 137 TRMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR KL         + TV G GYVL
Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVL 236


>gi|256423864|ref|YP_003124517.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256038772|gb|ACU62316.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 224

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 15/227 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IED+ AL+ SI   L  EN+   Y  + G+  I+    Y++D I+LDL L    G
Sbjct: 1   MKILIIEDEPALSKSIGAYLADENYLCEYAGNFGQ-AIDKITVYDYDCILLDLMLPGGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L  ++       V I+S  +S++DK++GLQ GADDY++KPF+  EL ARI +++RR 
Sbjct: 60  LKILEEIKEQNKQDGVIIISAKNSLDDKIKGLQIGADDYLTKPFHLPELAARIYSVIRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           +    ++I   +L +NL AKTV V  + + LT KE+ ++      KN  ++K     HL 
Sbjct: 120 QFGNVNIIELNELKINLLAKTVSVNDNNVVLTKKEFDLLLYFISNKNKVISKSALAEHLS 179

Query: 179 ------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +D  D      I V I  L+KKL+  AG  NY++T++G GY
Sbjct: 180 GDVADMFDNYD-----FIYVHIKNLKKKLT-EAGCDNYLKTLYGTGY 220


>gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria]
          Length = 227

 Score =  134 bits (337), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++ED+      +   L       YV+DL   G DG+ L    E+D +ILD+ L  +
Sbjct: 1   MKILVVEDEPKTGEYLRQGLTEAG---YVSDLVPNGADGLHLALQGEYDLVILDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R
Sbjct: 58  NGWQVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILR 117

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R   G+  +++   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  +
Sbjct: 118 RGHAGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 178 QVWDMNFDSDTNVIEVAMRRLRVKIDEGHAVK-LIQTVRGMGYVL 221


>gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD+ +A  I   L ++   V           +    EFD ++LDLGL D  G 
Sbjct: 1   MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   + TPV IL+   S+ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +  ++   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|325679592|ref|ZP_08159167.1| putative response regulator ArlR [Ruminococcus albus 8]
 gi|324108622|gb|EGC02863.1| putative response regulator ArlR [Ruminococcus albus 8]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L++++  + K  N++V     G D  +     E+D IILD+ +  + G 
Sbjct: 1   MRLLLAEDEKELSNALVAVFKHNNYSVDAVYDGLDAYDYIIGAEYDGIILDIMMPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I TPV +L+  S +ED++ GL SGADDY++KPF   EL+ARIRA+ RR  
Sbjct: 61  TVLKRIRDKGIQTPVLLLTAKSQVEDRITGLDSGADDYLTKPFAMGELLARIRAMTRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A + +  G+++++ +   +   +G    L  KE+Q++E+L L +N  ++ E  +  ++
Sbjct: 121 EFAPNSLKVGNVTLDRERFVISTPEGGEQKLGNKEFQVLEMLMLNRNVLISTERLMEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E+ ++ V+I  +RKKL+ A      I+   G GY L
Sbjct: 181 GFDAEAEISVVWVYISYIRKKLT-AVKADIEIKASRGVGYTL 221


>gi|313674517|ref|YP_004052513.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312941215|gb|ADR20405.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED   LA +IE  LK E F   V        +    YE+D +I+DL L D  G 
Sbjct: 1   MKVLIVEDQIELAKNIEEYLKKEGFQTSVAPDFFTATDKLAAYEYDVVIIDLMLPDGNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR  + S    ILS  +SI+DKVRGL +GADDY+ KPF+  EL +R++AI R  +
Sbjct: 61  DLLYSLRANRKSIGTLILSAKNSIDDKVRGLDAGADDYLGKPFHLLELASRLKAIYRTRK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             + ++I    + ++ D K V+V    + LT KEY+M+   +      LTK+    HL+ 
Sbjct: 121 QESSNVIELDKILIDTDKKEVKVGNQFLDLTKKEYEMLLFFANNAKRVLTKQNIAEHLWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D  D+ +    +   I  LRKK+  A G  + +ETV+G GY L++
Sbjct: 181 DFIDQSDSFDFVYQHIKNLRKKIQKATGS-DLLETVYGVGYKLKK 224


>gi|326201715|ref|ZP_08191586.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988315|gb|EGD49140.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 133/231 (57%), Gaps = 11/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGL 54
           MR+LLIEDD+ L+  IE  L+ E    Y+T+   DG E   FY       +D ++LD  L
Sbjct: 1   MRVLLIEDDENLSAVIEEQLQKEG---YITNRCADG-ETALFYALNLEYGYDIVLLDRML 56

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G  +L+A+R  +I TPV +++G+  ++DK+ GL  GADDY+ KPF+ +EL+AR+RA
Sbjct: 57  PIIDGLTILKAMRRKQIYTPVLMMTGLGELDDKIDGLDCGADDYLVKPFHIKELLARVRA 116

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + RR     + ++   DL+++   + +   G+ I LT KE  ++       + T T++  
Sbjct: 117 LTRRPTDIVEEVLRAYDLTLDAGQRRLTSNGYSIILTQKEADVMAAFLESPDKTQTRDGL 176

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++ GR E E   +D +I  LRK+L    G K  I+TV+G GY L E+ 
Sbjct: 177 LWKVWGGRGEVEDGNVDNYIHFLRKRLRE-LGCKTTIKTVYGAGYRLEESP 226


>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  + +S+E  L+   F+      G   +         A++LD+ +  + G  
Sbjct: 6   RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR      P+C+LS  SS+ D++ GL++GADDY++KPF   ELVAR+RA++RR+  
Sbjct: 66  VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S+   I  G L+V+L      + G RI LT +E+ ++ +L+      L++   L  +
Sbjct: 126 ATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 186 WGYDFAADTNVVDVFVTYLRKKL-EVDGAPRVIHTVRGVGFVLR 228


>gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 243

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+IED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVIEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240


>gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+ +V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ +    K  I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKVDSQFETK-LIHTVRGTGYVLR 221


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F+V   D GE  + L + Y  D ++LD+ L D+ GFE
Sbjct: 12  RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R LR       V  L+    + DKV GL  G DDY++KPF+ EE+VARIRA++RR  S
Sbjct: 72  VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGS 131

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL +N D+  V   G  + L+  E++++  L L  N  ++K   L+H++
Sbjct: 132 TVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D     E  I++ +I  LR+K+   A G   I T  G GYVLR   +  T 
Sbjct: 192 DYDFRGESGIVESYISYLRRKID--ADGPPLIHTKRGVGYVLRVPPESPTT 240


>gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 235

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+ A+   +   L SE F ++  D G  G+        D I+LDLGL D+ G E
Sbjct: 11  RILVIDDEAAIRRFLHSALSSEEFTLHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA +RRS  
Sbjct: 71  VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +  +GDL+V+L+ + V V+G  + LT  EY ++ LL    +  +T    L  ++ 
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + +++ V I  LRKK+        +I T  G GY L++
Sbjct: 190 VAYQEQPQVLRVTISNLRKKIERDPSRPRHITTEPGVGYRLKQ 232


>gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M+ILL+ED+  L ++I  +L+    N Y+ D   DG E   F E   +D IILDL L DI
Sbjct: 1   MKILLVEDNLDLNNTIREVLE---LNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ +R   I TPV IL+  +  +DK+ GL  GADDY++KPF+ +EL+ARIRAI R
Sbjct: 58  DGLEVLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+    + +++  DL ++L  K V+  G  + LT K Y ++E L   +   ++ E  L+ 
Sbjct: 118 RASTEKKDIVLIDDLEIDLKNKVVKKAGKFVELTPKLYCILEQLVRNRGKIVSYETLLSK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + P  + +   I  LRK +      K  I+T+ G GY
Sbjct: 178 CWEITEVPSRETMRANIKNLRKLID---PDKKIIKTIEGVGY 216


>gi|221065234|ref|ZP_03541339.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710257|gb|EED65625.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 135/224 (60%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +  +++ +L+ E    YV D  +DG       + +++D ++LDLGL ++
Sbjct: 1   MRLLLVEDDTMIGQAVQALLRGEG---YVVDWVQDGARADTALRGHQYDLVLLDLGLPEM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR  K +TPV + +    + D++ GL +GADDY+ KP++ +EL+ARIRA+ R
Sbjct: 58  DGLQVLRQLRARKDATPVLVATARDGVRDRIAGLDAGADDYVIKPYDMDELLARIRALAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GH +++   G + +N + +   V G  + L+G+E+ +++ L  R   TL+++   + 
Sbjct: 118 RAAGHLEAVYEHGGIMLNPNTREASVNGQPVTLSGREWAVLQALLARPGATLSRQQLEDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   DE     ++V+I  LRKKL  AA     +  V G GY++
Sbjct: 178 LYGWGDEVSSNAVEVYIHGLRKKLGAAA-----VLNVRGLGYMV 216


>gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           MR+LL+ED   L  ++   +  +   V       D ++  +F E       +D I+LDL 
Sbjct: 1   MRVLLVEDTAGLGEAVRDQIADDGHAV-------DWVQTLRFAEASIRTTAYDLILLDLM 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  GF  LR +R   I+TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ 
Sbjct: 54  LPDGHGFGFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVA 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+ RR RG+   +I  G+L ++L    +   G  + LT +E+ + E    R    L++  
Sbjct: 114 AVARRYRGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQ 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + LY    E E   I+V++ +LRKKL     G++ I TV G GY L
Sbjct: 174 LEDRLYAFGAEIESNTIEVYVSRLRKKL-----GRDAIVTVRGMGYRL 216


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA S++  L++E F V V   G + +   +   +D I+LD+ L  + G+
Sbjct: 1   MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  ++ TP+ +L+      D++ GL  GADDY++KPF+ + L+ARIR++VRR  
Sbjct: 61  EVCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL  +   K V   G  I LT +E  ++     R    LTK   L +++D
Sbjct: 121 TERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++V++ +LR+K+    G  + +ET  G GY LR
Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCAD-LETFRGTGYRLR 221


>gi|56540671|gb|AAV92789.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+ +A  +   L  + + V +    E G++  +   FD +ILDLGL  + G 
Sbjct: 1   MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + +R    S P+ IL+   +  DKV GL +GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ D   V      +HLT KEY ++E+L    +  L++   +++ + 
Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             + P  + + V +  LR KL       N IETV+G GY L  N +  T
Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPNFQSAT 229


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++  + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           MR+LL+ED   L  ++   +  +   V       D ++  +F E       +D I+LDL 
Sbjct: 1   MRVLLVEDTAGLGEAVRDQIADDGHAV-------DWVQTLRFAEASIRTTAYDLILLDLM 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  GF  LR +R   I+TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ 
Sbjct: 54  LPDGHGFGFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVA 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+ RR RG+   +I  G+L ++L    +   G  + LT +E+ + E    R    L++  
Sbjct: 114 AVARRYRGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQ 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + LY    E E   I+V++ +LRKKL     G++ I TV G GY L
Sbjct: 174 LEDRLYAFGAEIESNTIEVYVSRLRKKL-----GRDAIVTVRGMGYRL 216


>gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
 gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
          Length = 234

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           R L+IEDD   A  I   L+ +  +V V   G  GI       +D IILD  L +   G 
Sbjct: 3   RYLIIEDDALNARYIAEGLRQQGAHVSVCGDGVQGIAQAVGENWDVIILDRMLPNGFDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 63  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 122

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL VNL +++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 123 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+ +       I TV G GY L +  +D
Sbjct: 183 DYRFDPQTNVIDVHISRLRSKV-DKGFATPLIHTVRGVGYSLSDQPQD 229


>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
           7002]
 gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
           sp. PCC 7002]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++ L  ++  +L+ E   V + + G+ G+EL    E+D +ILD  L    G 
Sbjct: 1   MRILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL +++  +     G  I L+ +E Q++          LT E    HL+
Sbjct: 121 GGEPPNRLRIADLELDVANQMAYRAGRAIRLSDRELQLLSYFMEHPAQLLTHEQIYQHLW 180

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            DG + P   ++   +  LR+K+  A G +  I T++G+GY   E 
Sbjct: 181 QDGDESPSSNVLAALVRLLRRKV-EAKGDRPLIHTIYGKGYYFGEQ 225


>gi|56540679|gb|AAV92793.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWKDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649]
 gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+KALA +I   L +E F V V   G  G  L     +D I+LD+ L    G+
Sbjct: 1   MRVLLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K+  P  +L+      D+    + GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  DVLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L ++ + +TV   GH I LT KE+ +++ L       L+K   L++++D
Sbjct: 121 PARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I++V++  LR+K+  A G  + +ETV G GY L
Sbjct: 181 QAFDGSDNIVEVYVGYLRRKIDQAFGVTS-LETVRGMGYRL 220


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ LA  ++ +L+ E   V++   G  G+++    ++D  ILDL L D+ G 
Sbjct: 1   MAILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR A++ TP+ +L+   ++ED+V GL +GADDY+ KPF   ELVAR+ A++RR+R
Sbjct: 61  EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     +++   DL+++L        G  I LT KE+ ++E L       LT+   ++ +
Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    +    ++D++I  LR K+      +  I+TV G GY
Sbjct: 181 WQYDLDSLSNVVDIYIHYLRDKIDRGF-DRPLIKTVRGVGY 220


>gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    E+D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++++LR ++ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I   DL ++L  +     G +I LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LIQTVRGMGYVL 221


>gi|56540673|gb|AAV92790.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAERSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +EL L+ E + V   D G DGI   K  ++D ++LDL L  + G E
Sbjct: 4   KILIIEDDAQIARFVELELEHEGYQVKKFDNGYDGINALKEDDYDLLLLDLMLPGLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S +EDKV GL +GADDY++KPF  EEL+ARIRA++RR +G
Sbjct: 64  VCNKIREFS-DLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDKG 122

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +S  ++   D+ VNLDA  V+  G +I LT KEY ++  L   +   ++++  LN+++
Sbjct: 123 TIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E  I+DV+I  LR K+      K  I TV G GYV+R +  D
Sbjct: 183 GYNYTGETNIVDVYIRYLRSKIDEPFEEK-LIHTVRGVGYVMRSDQDD 229


>gi|300702441|ref|YP_003744041.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299070102|emb|CBJ41389.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LA  +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADSLLLTQHYDVVLLDLQLPSLSGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRR+ 
Sbjct: 61  AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+   + I+++I +LRKKL ++A     I T+ G GY+LR+
Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G +G+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +  S+ 
Sbjct: 64  VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQK 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  +  G LS+N   + V      I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 VSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +  ++DV+I  +R+KL  AA     I+T+ G GYVL+E++
Sbjct: 184 GYDYYGDTNVVDVYIRYVRQKL-EAANPTPLIQTIRGVGYVLKEHS 228


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  I+L L+ E +   +   G +G+   + +++D ++LD+ L ++ G E
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR +R     TPV +L+   ++ DKV GL  GA+DYI+KPF  EEL ARIR  +R   S
Sbjct: 65  VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124

Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A+    T   G+L VN   + V  +   I LT KEY ++  +   KN  L+ E  L 
Sbjct: 125 TSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++      +  I+ V+I  LRKK+ +A+    YI+TV G GY+L+E
Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DASFSTPYIQTVRGVGYMLKE 230


>gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator,
           Winged helix family [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++ED+      +   L    F   VTDL   G DG+EL K   +D +ILD+ L  +
Sbjct: 13  MKILIVEDEPKTGAYLRQGLTEAGF---VTDLARDGWDGLELAKSGHYDLMILDVMLPGL 69

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VL  +R A I TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+ +++R
Sbjct: 70  DGWQVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMR 129

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +   +S ++   DL ++L  +     G RI LT KE+ ++EL   RK   L + +  +
Sbjct: 130 RGQAALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIAS 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D   + +  +IDV + +LR K+      K  I TV G GYVL  +A+
Sbjct: 190 QVWDMNFDSDTNVIDVAVRRLRVKIDEGFDAK-LIHTVRGMGYVLETSAE 238


>gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70]
 gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V + G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|227524026|ref|ZP_03954075.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088765|gb|EEI24077.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 136/233 (58%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           + IL+IEDD++LA S++L L      +  T +  DG E     E   +D ++LDL L  +
Sbjct: 4   LHILIIEDDESLAQSLQLFLGE----IAQTTVSHDGFEGQMLGEEGIYDLVVLDLMLPQV 59

Query: 58  PGFEVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            G+++L+  R  + +S PV IL+   +++DKV G + GADDY++KPF++EEL+ R++A++
Sbjct: 60  NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119

Query: 117 RRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +RS GH    + +V    +V+L  +TV V+  ++ L GKE+ ++       +T +TKE  
Sbjct: 120 KRS-GHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQI 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            + L+    E  + +++V++  LRKK+  A   K  I+T+   GY+      D
Sbjct: 179 FDRLWGFESETAISVVEVYMSNLRKKIKTATDLKP-IKTLRNVGYMFETKELD 230


>gi|83746136|ref|ZP_00943190.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207722061|ref|YP_002252499.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207741825|ref|YP_002258217.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83727102|gb|EAP74226.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206587235|emb|CAQ17819.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593209|emb|CAQ60136.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LA  +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRR+ 
Sbjct: 61  AVLQRLRDRRSAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+   + I+++I +LRKKL ++A     I T+ G GY+LR+ +
Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRDAS 222


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   +   L+ ++  V     GE+ +E+ K  E+D I+LD+ L    GFE
Sbjct: 4   KVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RR   
Sbjct: 64  VCRQIRDFS-DVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAK 122

Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G + S  ++V GDL ++ +++ V      ++LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 KDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYFR 228


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+A+A  + L L  E F+  +   GE  +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+ +TP+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-ARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +  +   D         + +NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      + + +DV I +LR+K+ +  G K  + TVWG GY
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWK--LATVWGIGY 229


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD+ +   ++  L  E F VY    GE G+   K Y+   ++LD+ +  + G E
Sbjct: 4   RVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L V      + +L+    + DKV  L  GADDY+ KPF+ +ELVAR+RA++RR  G
Sbjct: 64  LCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +Q ++   DL +N   + V   G  I LT +EY ++ LL       LT++  L  ++  
Sbjct: 123 -SQEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + E  +++V +  LR+KL  A+GG   I+T+ G GYVL+
Sbjct: 182 NADLETNVLEVHMGHLRQKL-EASGGSRVIQTIRGVGYVLK 221


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+    + ++  L    F V +   GEDG+       +D +ILD+ L  I G+
Sbjct: 1   MKILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    PV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +S  +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL   A
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKMDDGFEPK-LIRTVRGMGYVLEVTA 225


>gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 2   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+ + PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 62  ELLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 122 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219


>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
 gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  ++L L+ E +   + + G +G+      +F  ++LD+ L  + G EV
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLPGLSGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR   + TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++   
Sbjct: 66  LRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGSD 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  GDL VN   + V+     + LT +E+ ++  L       LT+E  L  ++   
Sbjct: 126 PGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWGFD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  ++DV+I  +RKK+ +    K  I TV G GY ++E
Sbjct: 186 YLGDTNVVDVYIRYIRKKM-DYPYEKQLIHTVRGVGYAIKE 225


>gi|227509360|ref|ZP_03939409.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227512243|ref|ZP_03942292.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227084521|gb|EEI19833.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227191072|gb|EEI71139.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 136/233 (58%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           + IL+IEDD++LA S++L L      +  T +  DG E     E   +D ++LDL L  +
Sbjct: 4   LHILIIEDDESLAQSLQLFLGE----IAQTTVSHDGFEGQMLGEEGIYDLVVLDLMLPQV 59

Query: 58  PGFEVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            G+++L+  R  + +S PV IL+   +++DKV G + GADDY++KPF++EEL+ R++A++
Sbjct: 60  NGYDILKHWRTESHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALL 119

Query: 117 RRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +RS GH    + +V    +V+L  +TV V+  ++ L GKE+ ++       +T +TKE  
Sbjct: 120 KRS-GHLGNDNQMVVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQI 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            + L+    E  + +++V++  LRKK+  A   K  I+T+   GY+      D
Sbjct: 179 FDRLWGFESETAISVVEVYMSNLRKKIKTATDLKP-IKTLRNVGYMFETEELD 230


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 134/230 (58%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDK + +S+ L+L  E + V V   G + +   K +  D ++LD+ L +  G+E
Sbjct: 3   KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V + +R  KIS  P+ +L+      DKV GL+ GADDYI+KPF  +EL+ARI A++RR +
Sbjct: 63  VCKEIR--KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   IV     ++L  +TV+V+G  ++L+ +E+++++LL        T++M + H+
Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +      E + +DV+I  LR+K+ +      YI TV   GY  +E  +D+
Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNEDK 230


>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ +A +++  L++E F V + + GE  + L +  ++  I+LDL L    G+
Sbjct: 1   MQVLVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A I+TPV IL+      D+   L  GADDY++KPF+   L+ARIRA++RRS 
Sbjct: 61  DVCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  A        R+ LT +E+ ++E L    +T ++K   L  ++D
Sbjct: 121 PQRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V++  LR+K+ +   G++ I+TV G GY L
Sbjct: 181 AWFEGDPNIVEVYVGYLRRKI-DIPFGRSAIDTVRGVGYRL 220


>gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 232

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 131/221 (59%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +   ++L L+ E + V +   G++G+E  K   +D I+LDL L +I G EV
Sbjct: 4   ILIIEDDLRIRRILQLELEHEGYLVSLAKDGKEGLEKAKLIRYDLILLDLMLPEISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+   +I  KV  L  GADDYI+KPFN EEL AR+R  +R  + +
Sbjct: 64  CKELR-KNSDVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALRNKKDY 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + + +   DL +++  K + ++  ++ LT  EY+++EL  L +  T+++E  +  ++  
Sbjct: 123 QELNQLKYEDLVLDIIKKELIIEKRKVSLTKTEYRLLELFILNREITISREKIITEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E KI+DV++  LRKK+   A  K YI+ + G GY+L+
Sbjct: 183 DFEGEEKIVDVYLNSLRKKIE--APNKKYIQNIRGFGYMLK 221


>gi|309812765|ref|ZP_07706504.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308433282|gb|EFP57175.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 209

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 123/208 (59%), Gaps = 5/208 (2%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77
           + L+ E +++     G   ++  K ++ DA++LD+ L D  G EVLR +R    + PV  
Sbjct: 1   MALRYEGWDIKTAATGNSAVKTAKEFKPDAVVLDMMLPDFDGLEVLRRMRDEDPALPVLF 60

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ---SLIVTGDLSV 134
           L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS   A+   SL+  GDL++
Sbjct: 61  LTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRRSVQLAEEETSLLTVGDLTL 120

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194
           + D+  V   G  I+LT  E++++  L       L+K   L+ ++      +  +++++I
Sbjct: 121 DEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVWHYDFGGQANVVELYI 180

Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             LRKK+   AG +  I T+ G GYVL+
Sbjct: 181 SYLRKKID--AGREPMIHTMRGAGYVLK 206


>gi|299132545|ref|ZP_07025740.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298592682|gb|EFI52882.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 221

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +  S+   LK E   V     G DG +         ++LD+GL    G 
Sbjct: 1   MRVLLIEDDRMIGDSLIAALKREGMTVDWVRTGADGEDALANGGHGLVLLDIGLPGRSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R A  STPV I++    ++D++ GL  GADDYI KPF   EL+AR+RA++RR  
Sbjct: 61  DLLKDARRAGNSTPVLIITARDGVDDRIIGLDVGADDYIVKPFEMRELLARMRAVLRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQS+++ GD++++L++     +G    L  +E+ ++  L+ R    L++      +Y 
Sbjct: 121 GAAQSILIAGDVTLDLESHEATYRGTTAVLPAREFALMHALAERPGAILSRSRIEERIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ID  I  +RKK       K+ +  V G G+++
Sbjct: 181 WGEEVESNAIDFLIHSIRKKFD-----KDVVRNVRGAGWMI 216


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A  I   L+ ENF V +   G +G+   K  +FD +ILD+ L  I GF 
Sbjct: 4   KILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQIDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L +++  K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 64  ILHSIQEEK-DIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +    ++I+ G L +N D + V V G  ++L  KE++++  L+   N   +KE 
Sbjct: 123 IKGKFVKPPKNNIIIRG-LEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKED 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   + V I ++R+K+ ++     YIETVWG GY LR
Sbjct: 182 LFEKIWGLDAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRLR 230


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K +TP+ +LS  S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIR-SKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124

Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+              L++NL   +V   GH + +  KE +++  L+   N   T+E 
Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWN--ISTVWGIGY 228


>gi|83716824|ref|YP_439933.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167578456|ref|ZP_02371330.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167616593|ref|ZP_02385224.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143098|ref|ZP_05591360.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650649|gb|ABC34713.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 240

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 69  VCRRIR-GFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GAPVDSPASEALVFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC
           33394]
 gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC
           33394]
          Length = 237

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL+EDD  +A ++ + LK  N   Y  D  +DG+          +D ++LDLGL   
Sbjct: 13  MRILLVEDDGMIAQAVMMGLKHAN---YAVDWVQDGLAAQTALAGQNYDLVLLDLGLPKQ 69

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +LR +R  +  TPV I++    ++ ++ GL  GADDY+ KPF+  EL+ARIRA++R
Sbjct: 70  DGLSMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLR 129

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  G A  LI  G +++N     V++ G    I L+ KE+ +++ L  R  T  ++    
Sbjct: 130 RHHGQAAPLISNGVITLNPATYQVQLAGQEENISLSNKEFAILQALVSRAGTIHSRADLE 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +Y   DE E   ID  I  LRKK+     GK+ I+ + G G+++
Sbjct: 190 DKIYGWGDEVESNAIDFLIHSLRKKI-----GKDLIKNIRGVGWLV 230


>gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34]
 gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+      +V +L  DGI+         +DAI+LDLGL  +
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEHSG---WVAELSCDGIDALYRATSEPWDAIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +R
Sbjct: 58  DGITVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+A  +I  G+LS++     V  +G  I LT  E++++  L    +  +++   + H
Sbjct: 118 RSTGNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y    + +   I+VFI ++R+K+     G + I+TV G GY
Sbjct: 178 IYKQDFDRDSNTIEVFIGRIRRKI-----GNDVIKTVRGLGY 214


>gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 218

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   L   ++       GE  +   +   F  +ILD+ L  I G 
Sbjct: 1   MRVLLVEDDTMLGETMTASLARHHYTADWVTTGESALHALQTDSFPLVILDISLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R     TPV ILS    + D+V GL  GADDY+ KPF  EEL+AR+ A++RRS 
Sbjct: 61  QVLKKMRDRGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I   D+S+++ +  V +    I+LT  E+++++ L       L+K   L +++ 
Sbjct: 121 GSADDIITVRDVSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   +  I+V I  LRKK+      K  IE + G GY+++ 
Sbjct: 181 WDESAGLNSIEVHIHNLRKKMP-----KGTIENIRGVGYIIQH 218


>gi|326315633|ref|YP_004233305.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372469|gb|ADX44738.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD AL   I  ML+SE + V V + GE  +      E++A +LDLGL    GF
Sbjct: 1   MRILVVEDDPALRLGIRRMLQSEGWQVDVANDGELALTAVATAEYEAAVLDLGLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
           EVLR  R  +    V IL+    ++ +VRGL  GADD+++KPF  +ELVAR+RAI  RRS
Sbjct: 61  EVLRRWREQRRDLAVLILTARDELDQRVRGLNEGADDFLAKPFEAQELVARLRAITRRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G   +++  GDLS + +++ + ++  R+ L+ +E  ++ELL       + K   ++ + 
Sbjct: 121 KGLMTNVLRIGDLSFDTESRELRLREERLPLSPREAALVELLMASPGKAVAKSRIVSAMS 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ++++I KLR+KL   AG    I TV G GY +
Sbjct: 181 TWETDFSANAVEIYILKLRRKL---AGSGVAIVTVRGVGYAM 219


>gi|89902709|ref|YP_525180.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347446|gb|ABD71649.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+S    V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRSSGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+    +E++V+GL  GADDY++KPF+  EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRARGSALPVLILTAADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E++  R    ++K+  +  L 
Sbjct: 121 MGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLEVMLQRVGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  +E     I+V+I +LRKK+     G   I TV G GY L +  K
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIEK---GPIRIATVRGLGYCLEKIPK 224


>gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
 gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
          Length = 218

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L  S+ + L  + F V    LG     L K   F A+ILDL L D  G 
Sbjct: 1   MRILLVEDDQMLGESMVVSLSRQGFTVDWVQLGNGVDTLVKTESFTAVILDLTLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + P+ IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  QVLKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRIS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I    +S++L    V V G  I LT  E++++  L       ++K+     L+ 
Sbjct: 121 GFSDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D      I+V I  LRKK+     G   I+ + G GY++
Sbjct: 181 WDDMASDNAIEVHIHNLRKKM-----GGELIKNIRGVGYII 216


>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  +A  I   L+     V +V D G +         +D +ILDLGL  + G
Sbjct: 1   MRILLAEDDPVIADGICRALRRGGCAVDHVAD-GMEADAALAGQGYDLLILDLGLPRMNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR  K + PV IL+    ++D+VRGL +GADDY++KPF   EL AR+RA+ RR 
Sbjct: 60  IEVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +  I  G LS +   + V++ G  + L+ +E  ++E+  LR    ++K+  ++HL 
Sbjct: 120 TGQPRC-IEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLC 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     I+V++ +LRKKL ++      I TV G GY L
Sbjct: 179 GWGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCL 217


>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
           [Ralstonia eutropha JMP134]
 gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia eutropha JMP134]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L   +F V V   G DG+     +E+D IILD+ L  + G+
Sbjct: 1   MKILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K  TPV  L+    +ED+VRGL+ G DDY++KPF   EL+AR+R ++RR  
Sbjct: 61  DVLRQLRERK-DTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++    V   G RI LT +E+ ++  L+ R    L++    + ++D
Sbjct: 120 VREADRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I +V G GYVL
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKMDDHFAPK-LIHSVRGIGYVL 219


>gi|17548109|ref|NP_521511.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17430416|emb|CAD16889.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 224

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LA  +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRR+ 
Sbjct: 61  AVLQRLRDRRNAVPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PANAVELQCGDLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+   + I+++I +LRKKL ++A     I T+ G GY+LR+
Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  T    G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGY 219


>gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILL EDD  LA  +   L+      Y TD  ++G E   +    +FD +ILDLGL  +
Sbjct: 1   MRILLAEDDSVLADGLTRSLRQSG---YATDCVKNGAEADSVLSTQDFDLLILDLGLPKM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   SIE +V+GL  GADD+++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   ++I  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 178 LCEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCL 218


>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA  ++  L SE   V V   G +   L +   +D IILDLGL    G 
Sbjct: 1   MRILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     T + IL+  +   D+V GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  TVLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +    D++ +     V V G  ++LT +E  ++  L       +++    +H+Y 
Sbjct: 121 GKATPVFSKDDVTFDTRTNQVMVDGVPMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I VF+ +LRKKL     G + IETV GRGYV++
Sbjct: 181 HDGDRDSNTIAVFVNRLRKKL-----GSDLIETVRGRGYVIK 217


>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G+  I+  + +  DA++LD+ L D+ G 
Sbjct: 42  VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGL 101

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 102 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 161

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 162 AADRRSESMLVVGDLTLDEDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDR 221

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 222 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 264


>gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 230

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 121/225 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL EDD+ +A  +   L  +++ V V   G+        Y +D ++LD+ L +I GF
Sbjct: 2   VRILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A    P+ +L+ +    D+V GL SGADDY+ KPF+ EEL AR+RA++RRS 
Sbjct: 62  ALCRRLREAGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLRRSG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++         G  +HLT KEY+++E L        ++EM L+ L++
Sbjct: 122 PTRGPVLKAGPLSLDPLMLQATYGGLPVHLTPKEYRLLECLLRHPGQIFSREMLLDRLWE 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    +   + +LR+KL  A   ++ ++TV G GY     A
Sbjct: 182 PAHAGGDDAVKALVLRLRRKLQEAGAPQDLLKTVHGFGYCFNRCA 226


>gi|148547951|ref|YP_001268053.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512009|gb|ABQ78869.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 219

 Score =  134 bits (337), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  ++   +  +   V      +      +   +D I+LDL L D  G 
Sbjct: 1   MRVLLVEDAPGLGEAVREQIADDGHAVDWVQRLDHARNSVRSTPYDLILLDLMLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR  R A   TPV IL+    I D++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 61  DFLRQQRAAGDVTPVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVGRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+    I  GDL V++ A+TV+     + LT +E+ + E    R +  L+K      LY 
Sbjct: 121 GNPNPQIRLGDLQVDMSARTVQRGSATVDLTAREWALFEAFVQRPSALLSKSQLEERLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V+I +LRKKL     G+  IETV G GY L
Sbjct: 181 FGAEIESNTIEVYISRLRKKL-----GRELIETVRGMGYRL 216


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRETK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|294670535|ref|ZP_06735415.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307814|gb|EFE49057.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A +    LK   + V     G   +   +   +D I+LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAAACGLKDSGYAVDWIKNGGQVVSAVQAQPYDLILLDLGLPGCDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR A  S P+ I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  QILAELRAAGCSVPILIVTARDDLHSRLGGLDGGADDYIVKPFDMAELQARMRAVLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +Q+L   G L+++   + V V G    I L+ KE+ +++ L +R    L++    + +
Sbjct: 121 GQSQALPSNGLLTLDPATRRVRVAGQEGDIMLSNKEFAVLQALLMRPGMILSRTDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   +D  I  LRKKL     GK +I+ V G G+++
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGAGWLV 218


>gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131]
 gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           MRILLIEDD+ +   +++ L    F +     G+ G +L  F   +DA++LDL L +I G
Sbjct: 1   MRILLIEDDRLIGDGLKVGLTQLGFTIDWFMDGKQG-QLALFDAPYDAVVLDLSLPNIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E++AR++A++RR 
Sbjct: 60  MDILKHWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S +  GD+ ++  A TV  QG  + L GKE+ ++ L     N   ++ +    LY
Sbjct: 120 SGQLSSKLTHGDVEMDPVAMTVTQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  +E     ++V I  LR+KL N      +I T+ G GY L ++
Sbjct: 180 NWDEEVSSNSVEVHIHHLRRKLGN-----KFIRTIHGVGYRLGDD 219


>gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
 gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
          Length = 245

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++A+A      L+  +F V + + GE G++     + D IILDL L D+ GFE+
Sbjct: 4   ILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDMDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            R LR  +I  P+ I+S   S  DK+RGL  GADDYI+KPF+  ELVAR++A +      
Sbjct: 64  CRELR-HRIDIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLNRYIRL 122

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R R      I    L ++  A+ V V       T KE+ ++  L+   N   +K+   +
Sbjct: 123 TRKRIDVNEYIEYPGLKIDKSARRVFVNEEERFFTTKEFDLLTYLATHPNHVFSKDELFS 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E+  + V I K+RKK  NA     YIETVWG GY  R
Sbjct: 183 AVWGMDSMGEIATVTVHIKKIRKKTENANVKSGYIETVWGSGYRFR 228


>gi|116696122|ref|YP_841698.1| response regulator [Ralstonia eutropha H16]
 gi|113530621|emb|CAJ96968.1| response regulator of copper response,OmpR-family [Ralstonia
           eutropha H16]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLRQGLTEAGFVVDLVANGLDGQHLAMTEPYDLVILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR A+I+ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRAAEIAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 AQMALDRIQVADLVLDLGRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDEFEPK-LIQTVRGMGYVL 221


>gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica]
 gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|170701551|ref|ZP_02892501.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133545|gb|EDT01923.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGVVPMIQTVRGSGYMLR 224


>gi|160933828|ref|ZP_02081216.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753]
 gi|156867705|gb|EDO61077.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD  L  S++ + ++  + V     G D +   +  E+D +I D+ +  + G 
Sbjct: 1   MRLLIAEDDTRLLKSLKHIFEANQYMVDAVSNGMDALAYAESEEYDGLIFDIMMPGMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR   + TP   L+  + I+ +V GL +GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  EVLKRLREKGVCTPALFLTAKTEIDQRVEGLDAGADDYLPKPFSTPELLARVRAMLRRRD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L   G L +N     ++ +  +  L+G+E+Q++E+L  R N  +  + F++H++ 
Sbjct: 121 NYVPDLCKFGGLILNRSTYELQCEDKKTALSGREFQIMEMLMDRPNFIIPIDDFMSHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +V +I V I  +RKKL++       I  + G GY L E
Sbjct: 181 WESDVDVSVIWVHISNIRKKLASMKANVE-IRFIRGAGYKLEE 222


>gi|150376401|ref|YP_001312997.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150030948|gb|ABR63064.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ALA  +  +L+   + V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNRAAVLILTARGAPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++S++L  ++    G  I +  +E  ++ELL +R    + K+  +  L D
Sbjct: 121 GLRASVVSYGEVSLDLTTRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D+     I+ ++ +LRK+LS        + T  G GY L + A  E
Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLSPYG---LTVRTARGIGYYLDKTADPE 225


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV--RRS 119
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++  RRS
Sbjct: 64  VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRS 123

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RG     +++   G++ ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R     + +D F+ +LR  + + A    ++ETV G GY
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDDKA+ + I   L   ++N +  + GE  + L   ++ D IILDLGL DI G 
Sbjct: 4   VSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDIDGV 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++++ +R A  + P+ ++S  S  +DK+  L SGADDY++KPF+ +EL+ARIR  +R+  
Sbjct: 64  DIIKKIR-AWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRKMN 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++    +  + GDL ++  +  V V     HLT  EY+++ LL+      LT    L
Sbjct: 123 YDNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTYIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++    E EV  + VF+  LRKK+        YI+T  G GY L
Sbjct: 183 KEIWGVAYESEVPSLRVFMATLRKKIEKNCEKNTYIQTHIGVGYRL 228


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 128/232 (55%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L   NF V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 28  IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 88  TRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 147

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L       L+K   L+H++ 
Sbjct: 148 TEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHVWQ 207

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     +++  G K+     IET  G GY++RE
Sbjct: 208 YDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMIRE 259


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++++   + + L+ E + ++    G+  +   +    DA++LD+ L D+ G 
Sbjct: 43  VRVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   S+E++V GL +G DDY++KPF  EE+VAR+R ++RRS 
Sbjct: 103 SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 162

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 163 AADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDR 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         +++++I  LRKK+   AG +  I T  G GY+++
Sbjct: 223 VWSYDFGGHANVVELYISYLRKKID--AGREPMIHTRRGAGYMIK 265


>gi|56416091|ref|YP_153166.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197365017|ref|YP_002144654.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204926850|ref|ZP_03218052.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|56130348|gb|AAV79854.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096494|emb|CAR62101.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204323515|gb|EDZ08710.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615448|gb|EFY12368.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618508|gb|EFY15397.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622079|gb|EFY18929.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627151|gb|EFY23943.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631110|gb|EFY27874.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637671|gb|EFY34372.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642482|gb|EFY39083.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643642|gb|EFY40196.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648285|gb|EFY44745.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653516|gb|EFY49846.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659657|gb|EFY55900.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662133|gb|EFY58349.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666120|gb|EFY62298.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672540|gb|EFY68651.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675969|gb|EFY72040.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680454|gb|EFY76492.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684651|gb|EFY80655.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194670|gb|EFZ79861.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197156|gb|EFZ82296.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201727|gb|EFZ86791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206241|gb|EFZ91203.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213252|gb|EFZ98054.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215623|gb|EGA00367.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222045|gb|EGA06431.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227912|gb|EGA12066.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229081|gb|EGA13210.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236308|gb|EGA20384.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237572|gb|EGA21633.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241762|gb|EGA25791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248090|gb|EGA32027.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254579|gb|EGA38390.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258361|gb|EGA42038.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259640|gb|EGA43274.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265913|gb|EGA49409.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270355|gb|EGA53803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|317046592|ref|YP_004114240.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948209|gb|ADU67684.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 6/206 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD+ +  +++  L++  ++V   D   DG+     +    +  ++LDLGL   
Sbjct: 1   MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVFATNAWTEGGYSCVLLDLGLPRE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR  R     TPV +L+   ++  +V+GL SGADDY+ KPF+ +E++AR+RAI R
Sbjct: 58  DGIHVLRRARNRGDMTPVLVLTARDTVAQRVQGLDSGADDYLLKPFDLQEVLARMRAITR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A SL+ +GD+ +++  + V  +G R  LT +EY ++  L  R    L++E   N 
Sbjct: 118 RRHGAADSLLGSGDVQLDMMTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN 203
           +Y   +E     +DV I  +R+KL N
Sbjct: 178 IYGWGEEVTSNAVDVLIHGMRRKLDN 203


>gi|218508769|ref|ZP_03506647.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 412

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 116/200 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L+   + + +   GED   + K  E+ A+ILDL L  + G 
Sbjct: 1   MRLLVVEDNKDLAAWLGKALRQAQYAIDIAHDGEDAEHMLKVAEYSAMILDLALPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV IL+  +S++ +V GL SGADDY++KPF   EL ARIRA+VRR +
Sbjct: 61  TLLKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  GDL  +   +   V G  + LT +EY ++E L ++  TT++K      ++ 
Sbjct: 121 DRASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKK 200
             DE +   I+++I +  K+
Sbjct: 181 FDDEADPSAIEIYIHRAAKE 200


>gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR
 gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G  G+       +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G ++++  + T  + G  + L  KE+ ++ELL       L + +    LY+
Sbjct: 121 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LR+KL +A     +I TV G GY L
Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 216


>gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDIILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RR+  
Sbjct: 63  VLKQIR-QRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+  GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   E     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           +++L++ED++ +A  ++  L    + V+  D G DG+ L     ++AII+D  L   I G
Sbjct: 4   IKLLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++ ALR    + P+ ILS M+ ++D+++GLQSG DDY+ KPF+  EL+AR+ AI+RRS
Sbjct: 64  LSIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRS 123

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   + + +V G+L +++    V   G  I L  +E+ ++E L    N  +T+ M L ++
Sbjct: 124 RELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +P+  ++DV I KLR+KL +       ++T+   GY+L
Sbjct: 184 WDYDFDPQTNVVDVHISKLRQKL-DIDSLPPMLKTIRNAGYML 225


>gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD   A  I   L+S  F+V +   G +G+ L +  ++  I LD  L  I G  
Sbjct: 3   RVLTIEDDLVTAEEIATELRSHGFDVDLASDGSNGLALARAGDYAVITLDRMLPGIDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  LR   I+TPV ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR   
Sbjct: 63  LVTTLRREGITTPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++  GDL ++L  ++    G  I L   E++++E L       +T+ M    ++
Sbjct: 123 TGAIDNVLRAGDLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   +IDV I ++RK++    G    I TV G GYV 
Sbjct: 183 GYHFDPGTNLIDVHIGRVRKRIEQ-PGRPQPIMTVRGTGYVF 223


>gi|327396126|dbj|BAK13548.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 219

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD+ +  +++  L++  ++V   D   DG+     +    +  ++LDLGL   
Sbjct: 1   MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR  R    +TPV IL+   ++  +V+GL  GADDY+ KPF+ +E++AR+RAI R
Sbjct: 58  DGLQVLRRARGRGDATPVLILTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A S++ +GD+ +++  + V  +G R  LT +EY ++  L  R    L++E   N 
Sbjct: 118 RHHGSADSVLGSGDVQLDMLTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y   +E     +DV I  +R+KL N     + I  V G G+
Sbjct: 178 IYGWGEEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 214


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++++   + + L+ E + ++    G+  +   +    DA++LD+ L D+ G 
Sbjct: 31  VRVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   S+E++V GL +G DDY++KPF  EE+VAR+R ++RRS 
Sbjct: 91  SVLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSG 150

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 151 AADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDR 210

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         +++++I  LRKK+   AG +  I T  G GY+++
Sbjct: 211 VWSYDFGGHANVVELYISYLRKKID--AGREPMIHTRRGAGYMIK 253


>gi|71907507|ref|YP_285094.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71847128|gb|AAZ46624.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M ILL+EDD  LA  +   L+      Y+ D   DG+    L     +D +ILD+GL  +
Sbjct: 1   MHILLVEDDALLADGLARALRHSG---YIVDTANDGLSADSLLANEAYDLVILDIGLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR  +  TPV +LS   ++E++VR L  GADDY+ KP  + EL AR+RA++R
Sbjct: 58  DGCEVLQRLRTRRQQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A   +V G L ++   K   +    + L  +E+  +E L+ R N  ++KE  +  
Sbjct: 118 RRLGEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY  +DE     I+  + +LR KL  A      I TV G GY L + A
Sbjct: 178 LYSWQDEITPNAIEKLVSRLRVKLEEAG---ITIRTVRGLGYYLEKPA 222


>gi|166032567|ref|ZP_02235396.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
           27755]
 gi|166026924|gb|EDR45681.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+I+D+ ++  ++ + LK E+  V   D G   +++ K   FD I+LD+ + D  GF
Sbjct: 4   ISVLIIDDEPSILKAVSMTLKQEHIAVTCADNGALALDILKANTFDLILLDIIMPDQDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L+ +R ++  TPV +LSG      +V+GL+ GADDYI+KPF+K  LV++IRA+VRR  
Sbjct: 64  SILKVIRSSQNYTPVILLSGRGEDSAQVKGLELGADDYITKPFSKTVLVSKIRAMVRRTN 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   A + +  G  ++ ++++TV   G  I LT KE+ ++ L         +K+  
Sbjct: 124 QYVLSSDEAITEVKKGSFTLRMESQTVLKNGKEISLTSKEFSLLYLFIENPEYIFSKQEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + ++   D  +   I V+I KLR KL +      +I TVWG+GY
Sbjct: 184 FSKVWRS-DNCDDSTILVYIKKLRDKLEDDPSHPTHICTVWGKGY 227


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/227 (36%), Positives = 130/227 (57%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  I+L L+ E +   +   G +G+   + +++D ++LD+ L ++ G E
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR +R     TPV +L+   ++ DKV GL  GA+DYI+KPF  EEL ARIR  +R   S
Sbjct: 65  VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124

Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A+    T   G+L VN   + V  +   I LT KEY ++  +   KN  L+ E  L 
Sbjct: 125 TSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++      +  I+ V+I  LRKK+ +A     YI+TV G GY+L+E
Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DAPFSTPYIQTVRGVGYMLKE 230


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G+  ++  + +  DA++LD+ L D+ G 
Sbjct: 43  VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 163 AADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDR 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 265


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   +E  LK   F V     GE+G+        D IILDL L  + G E
Sbjct: 27  RVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLDGIE 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR+  
Sbjct: 87  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 + H+   +V G L +  D         R+ LT KE++++  L+  K   LT++ 
Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 207 LLSAVWNYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEEPKADE 261


>gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILTAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ ++ +V     GE+ +EL K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHL 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A++      +  G+L ++ +++ V +    I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EAKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYFQ 228


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E+F V     GE G+EL    ++D  ++D  L  + G 
Sbjct: 1   MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A  + PV  L+   +++D V GL +GADDY+ KPF  EEL+ARIRA +R++ 
Sbjct: 61  EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L   G L ++ +        H + LT KE+ ++E L    +   T+   + H++D
Sbjct: 121 PTTGPL-TAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV++  LR+KL  AAG    I+TV G GYV+R
Sbjct: 180 IHFDADTSVIDVYVNFLRRKLE-AAGCTGLIKTVRGVGYVIR 220


>gi|33591407|ref|NP_879051.1| two-component response regulator [Bordetella pertussis Tohama I]
 gi|33571049|emb|CAE40537.1| two-component response regulator [Bordetella pertussis Tohama I]
 gi|332380808|gb|AEE65655.1| two-component response regulator [Bordetella pertussis CS]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  LA  +   L  ++  V V   G +G  L    +++ +ILD+ L DI GF
Sbjct: 1   MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A  +TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+AR+ A+ RR R
Sbjct: 61  AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV I +LR KL +    K  + TV G GYVL
Sbjct: 181 MNFDSDTNVIDVAIRRLRGKLDDPYDAK-LLHTVRGMGYVL 220


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 132/231 (57%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IED+  +A S+ + L  E   V VT  G  G+++ +  E D +ILDL L DI G 
Sbjct: 10  LHILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGM 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR    + P+ +L+    ++++V+GLQ GADDYI KPF+ +EL+AR+ A++RR+ 
Sbjct: 70  VVCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAG 129

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++    L+++ + + V + G ++ LT  E+ ++EL         T+E  L+ ++
Sbjct: 130 VSRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                 +  I++V +  LR+K+ +    +  I T++G GY LR   +DET 
Sbjct: 190 GFTYVGDSNIVEVHMSNLREKIGDHE--RKLIRTIYGVGYCLR--PEDETA 236


>gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 362

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 130/236 (55%), Gaps = 7/236 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA +I   L  +N+ V +   GE G++    Y +D I+LD+ L  +   
Sbjct: 1   MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A  ++P+ +LS  ++ +D V GL +GADDYI KP   E L AR+RA++RR+R
Sbjct: 61  SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G+L ++     V   G  + L+ KEY ++ LL        +++  +  L+ 
Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
             D P  + +   +  LR+KL  A  G + IETV+G GY L+     + CE L+TA
Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVG-DIIETVYGFGYRLK-----DICE-LQTA 229


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V   G  G+   +    D I+LD  L  I G E+
Sbjct: 5   ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGISGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+    I D+V GL +GADDYI KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQEE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I+  DL +N   + V      I LT KE++++E L       LT++  L  ++   
Sbjct: 125 NPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL    G K  I+T+ G GYVLR+
Sbjct: 185 FMGDSNIIEVYVRYLRLKLEE-NGEKRLIQTIRGVGYVLRD 224


>gi|70731211|ref|YP_260952.1| DNA-binding response regulator QseB [Pseudomonas fluorescens Pf-5]
 gi|68345510|gb|AAY93116.1| DNA-binding response regulator QseB, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+AL   I + L +E + +     G   +   +   FD ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDRALGQGIRVALSAEGYTLDWLQDGASALHALRTESFDLLLLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR A+   PV IL+      +++ GL +GADDY+ KPF+ EE  AR+RA++RRS+
Sbjct: 61  ELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEFKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    + ++   + V+ Q + + LT  EYQ++  L +R    +T+E     LY 
Sbjct: 121 GRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQLMVRPGKVVTRERLSRALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D  E   ++V I  LRKKL +       I TV G GYVL
Sbjct: 181 WQDRVESNTLEVLIHNLRKKLCS-----ELIRTVRGVGYVL 216


>gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
 gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 15/227 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL++EDD+ L   +   +K+     YV+D    GE+   L     +DA+ILD+GL  +
Sbjct: 1   MRILIVEDDRNLNRQLAEAVKNAG---YVSDSAFNGEEAYFLGSTESYDAVILDIGLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+   R      PV +L+      DKV G+ +GADDY+ KPF+ EEL+AR+RA++R
Sbjct: 58  DGICVVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEELMARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS GHA S +  G   V LD KT  V   G  I LT  E++++  L    +  +++    
Sbjct: 118 RSTGHATSTLCCG--KVLLDTKTSRVFFDGQLIKLTSYEFRLLSYLMHHGDRIVSRTELT 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            HLYD   + +   ++VF+ +LRKKL     G + IET+ G GY +R
Sbjct: 176 EHLYDQDFDKDSNTVEVFVGRLRKKL-----GMDLIETIRGMGYRVR 217


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  +      G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 179 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE+ +     +  D IILDL L  I G++
Sbjct: 6   KILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR+RA++RR   
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   ++  +   DL+VNL    V   G ++ +  KE +++  L+   N   T+E  L
Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPHWS--IATVWGIGY 226


>gi|222151313|ref|YP_002560469.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120438|dbj|BAH17773.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  IEL L  E++ V V   GE G++     E+D I+LD+ L  + G E
Sbjct: 3   RILVVEDEANLARFIELELTHESYAVTVMYDGESGLQEALSTEYDCILLDIMLPKLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TPV +++      DKV GL  GADDYI KPF+ EEL+AR+RA++RR++ 
Sbjct: 63  VCRKLRREK-ETPVIMITAKGETYDKVIGLDYGADDYIVKPFDIEELLARLRALLRRNKN 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ L+V G+L ++ +A TV      I LT  E+++++LL++ K   +T+E  L  ++
Sbjct: 122 EDDSEHLLVVGNLQIDKEAFTVLCDHQLIELTKTEFELLKLLAMNKRHVMTREKVLTAIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +E E  ++DV+I  LR KL    G    IETV G GYV+R
Sbjct: 182 GYDNEVETNVVDVYIRYLRNKLK-PFGQDQLIETVRGVGYVIR 223


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 21  VRVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 81  SVLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G A+S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L
Sbjct: 141 SAVAAGRAESTLTVGDLVLDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQIL 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++     +  +++++I  LRKK+   AG    I T  G GY+++  
Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 247


>gi|56540655|gb|AAV92781.1| PmrA [Salmonella enterica]
 gi|56540657|gb|AAV92782.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|16767542|ref|NP_463157.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161617435|ref|YP_001591400.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991502|ref|ZP_02572601.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231307|ref|ZP_02656365.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237001|ref|ZP_02662059.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168243710|ref|ZP_02668642.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263368|ref|ZP_02685341.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466994|ref|ZP_02700842.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821248|ref|ZP_02833248.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446648|ref|YP_002043542.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451690|ref|YP_002048283.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469502|ref|ZP_03075486.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734993|ref|YP_002117227.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250754|ref|YP_002149207.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262661|ref|ZP_03162735.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245395|ref|YP_002218184.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387181|ref|ZP_03213793.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205355063|ref|YP_002228864.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859446|ref|YP_002246097.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224586057|ref|YP_002639856.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912749|ref|ZP_04656586.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422853|gb|AAL23116.1| response regulator in two-component regulatory system with BasS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56540683|gb|AAV92795.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|161366799|gb|ABX70567.1| hypothetical protein SPAB_05292 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405311|gb|ACF65533.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409994|gb|ACF70213.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455866|gb|EDX44705.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710495|gb|ACF89716.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630642|gb|EDX49254.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214457|gb|ACH51854.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197240916|gb|EDY23536.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290033|gb|EDY29392.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939911|gb|ACH77244.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199604279|gb|EDZ02824.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205274844|emb|CAR39904.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330124|gb|EDZ16888.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334263|gb|EDZ21027.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337324|gb|EDZ24088.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342091|gb|EDZ28855.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347889|gb|EDZ34520.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711249|emb|CAR35625.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470585|gb|ACN48415.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249390|emb|CBG27254.1| Two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996618|gb|ACY91503.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160784|emb|CBW20315.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915397|dbj|BAJ39371.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088702|emb|CBY98460.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223164|gb|EFX48234.1| Transcriptional regulatory protein basR/pmrA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|326625984|gb|EGE32329.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630216|gb|EGE36559.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991107|gb|AEF10090.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TPV IL+      D V GL +GADDY++KPF   EL+AR+RA++R  RG 
Sbjct: 64  ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGQ 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +++ +V G + ++ D++   +    +HLT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 122 SETPVVQG-VRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                K +D+ I  LR+KL + A    YI TV G G+
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGF 217


>gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  LA S+   L    F V     G     L    ++   ILD+G+  + G 
Sbjct: 1   MRILLAEDNLKLAESLVDSLSQSGFAVDCMHDGASADHLLTTQDYALAILDIGMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNELEARARALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH ++ +  G L  +  ++   + G  + LTG+E  ++E+L +R    + K      ++ 
Sbjct: 121 GHDRTALECGPLRYDSVSRAFTLHGELLQLTGRERAVLEVLLMRDGRAVNKAALSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 IDESVNADAIEIYVYRLRKKLE---GSGVSIVTLRGLGYLL 218


>gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA3]
 gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA2]
 gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL099PA1]
 gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium
           acnes 266]
          Length = 243

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240


>gi|83746149|ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551]
 gi|207722048|ref|YP_002252486.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207741838|ref|YP_002258230.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|300702429|ref|YP_003744029.1| transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
 gi|83727115|gb|EAP74239.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551]
 gi|206587222|emb|CAQ17806.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593222|emb|CAQ60149.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|299070090|emb|CBJ41377.1| Transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
          Length = 221

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  +   +E  L+   + V +V D G+  I++     +D ++LDLGL    G
Sbjct: 1   MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRD-GQTAIDVSGHQHYDVLLLDLGLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR      PV IL+   +++++VRGL  GADDY+ KPF   EL+AR+RA++RR 
Sbjct: 60  HAVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A  ++  G LS  LD  T EV+   G  + L+G+E+ +++ L LR    L++     
Sbjct: 120 GGAASPVLSNGMLS--LDPATHEVRVGDGEAVRLSGREFALLQTLMLRPGAILSRSELEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +Y    E     ++  I  LRKKL     G   I+ V G G+++
Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GAESIKNVRGVGWMV 217


>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
           FD-1]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++  +LK   ++V     G DG++      +D IILD+ L  + G 
Sbjct: 1   MRLLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLPGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR   I+TPV +L+  S +EDK+ GL  GADDY++KPF   EL+AR+RA+ RR +
Sbjct: 61  EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRR-K 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +S +    L++N D  +V  +G  + L+ KEYQ++ELL       L KE  +  +
Sbjct: 120 GEIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E   I+V+I  LRKKL++ +     I+T  G GY L +
Sbjct: 180 WGYESDVEYNNIEVYISFLRKKLASISAPVQ-IKTARGIGYSLEQ 223


>gi|163856366|ref|YP_001630664.1| two-component response regulatory protein [Bordetella petrii DSM
           12804]
 gi|163260094|emb|CAP42395.1| two-component response regulatory protein [Bordetella petrii]
          Length = 229

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G           FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGAAADSALAAQAFDLLILDLGLPQLAGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV IL+   S+E +V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  G L  +   +   V    + L+ +E  ++E+L  R    ++K   ++HL +
Sbjct: 121 GGGATLLRHGRLVFDQTGRVALVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
             +E     I+V++ +LRKKL   +G K  I TV G GY L    +D+   YL
Sbjct: 181 WGEEVSTNAIEVYVHRLRKKL-EPSGVK--IITVRGLGYCLE---RDQGAGYL 227


>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 230

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V+    G + + +   ++ D ++LDLGL D+ G E
Sbjct: 7   RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   +S PV +LS  S   DKV  L +GADDY++KPF  +E +AR+RA VRR   
Sbjct: 67  VLAGLR-GWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGAT 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++   +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 126 AAETDEPVIETSSFTVDLAAKKVTKGGVEVHLTPTEWGMLEMLVRHRGKLVGREELLKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL +      ++ T  G GY  ++
Sbjct: 186 WGPAYAKETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRFQQ 230


>gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 220

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+   PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  ELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218


>gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
 gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 16/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL+EDD+ ++  +E  L  E F V       DG+E C+ +E   FD ++LDL +  +
Sbjct: 1   MRILLVEDDREISEMLEEFLIQEAFEVVP---AFDGLEACEKFEDGEFDLVLLDLMIPKM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V++ +R  K   P+ I+S   S+ DK  GL+ GADDYI+KPF   E++ARI+A +R
Sbjct: 58  SGMDVMKTIR-EKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLR 116

Query: 118 RSRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R+  +A          + +  GD+ +N    TV  +G +I LT KE++++ LL       
Sbjct: 117 RTNQYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKV 176

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            TKE   + +++     +   ++V I +LR K+ + A    YI TVWG GY
Sbjct: 177 YTKEQIYSLVWEDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGY 227


>gi|229589098|ref|YP_002871217.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229360964|emb|CAY47824.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   G  G  L     +D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGQYLRQGLTEAGFTTELVADGTSGQHLALTGAYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRTAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   DL ++L  + VE  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STPQETALQLADLRLDLIRRRVERDGQRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  II+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEE 223


>gi|307326237|ref|ZP_07605434.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888180|gb|EFN19169.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  ++LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRHGLWMARTGEYALVVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRREGNATPILVLTAKDGDWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  +  LRKK+ + A  +  ++TV G GY L
Sbjct: 181 DEAQDP--NLVEARVSALRKKV-DTAFHRQSLQTVRGTGYRL 219


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 22  VRVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 82  AVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   +SL+  GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 142 TAAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDR 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++++I  LR+K+   AG    I T  G GY+++  
Sbjct: 202 VWSYDFGGQANVVELYISYLRRKID--AGRPPMIHTRRGAGYLIKPG 246


>gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 225

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD     +IE ++K    +  N+     G  G+ L     +D +ILD  L  +
Sbjct: 1   MKILLVEDDTT---TIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     A++ +  G+L + L  + V + G  + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGLSQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LRE 
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLREG 224


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  ELVAR++AI+RR+  
Sbjct: 64  VCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSK 123

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q            V G L+V  D   V    H + LT KE++++  L    N TLT+E
Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G 
Sbjct: 43  VRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 103 AVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 162

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 163 AADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDR 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++  A 
Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIKPAAS 269


>gi|323132633|gb|ADX20063.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 228

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 7   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 59

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 60  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 119

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 120 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 180 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 222


>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 248

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  L  ++   LK E +       G  G+EL     +D I+LDL L  + G+
Sbjct: 20  MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  K  + V ILS  S +EDK+ GL  GADDY++KPF  +EL ARIRA+ RR  
Sbjct: 80  QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139

Query: 121 GHAQSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +V  DL +N+   T+      H + L  KE+Q++E L       +++      +
Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +    E E   +DV+I  LRKKL +  G    I  V G GY L+E   D
Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKH-TGAHVEIRAVRGIGYTLQEAGAD 247


>gi|18450333|ref|NP_569204.1| hypothetical protein pli0051 [Listeria innocua Clip11262]
 gi|16415834|emb|CAC42049.1| pli0051 [Listeria innocua Clip11262]
          Length = 240

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 128/236 (54%), Gaps = 10/236 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+   I   L++ N+N Y  D G   +      + D IILDLGL D+ G  +
Sbjct: 7   ILVVEDDKAIRKLITTTLETRNYNFYTADTGNAALIQVTSRQPDIIILDLGLPDMDGTTI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R      P+ ++S  S   DK+  L  GADD+++KPF+ EEL+ARIR  +RR    
Sbjct: 67  IQRVREWS-QVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVSLRRRAYT 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    Q++ + GDL +N   + V +    IHLT  EY+++ LL+      LT   ++ H
Sbjct: 126 NSELSTQNVFINGDLKINYTLRAVYLAEIEIHLTPIEYKLVSLLAKNVGRVLTHN-YITH 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL---RENAKDETC 230
              G    ++  + VF+  LRKK+   +  + YI+T  G GY +    +N ++ET 
Sbjct: 185 QIWGDYSNDIPALRVFMANLRKKIEKKSAQQRYIQTHVGIGYRMLQVSDNKENETI 240


>gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
 gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
          Length = 285

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G  G+       +DA+ILDL L  I G 
Sbjct: 67  MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 126

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 127 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 186

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G ++++  + T  + G  + L  KE+ ++ELL       L + +    LY+
Sbjct: 187 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 246

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LR+KL +A     +I TV G GY L
Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 282


>gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
 gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K L   I   L  E + V     G+D ++     E+DAI+ D+ L  I GF
Sbjct: 1   MRILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+LR +R   I TPV +L+    IED+V+GL  GADDY+ KPF  +EL+AR+R ++RR  
Sbjct: 61  EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  +A ++    +L+VN ++  V      I L+ +E+ ++E +   K   L++E    
Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           H+++   E    +IDV+I  LR+K+      K  I T+ G GYVL+
Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRRKIDKDFEPK-LIHTIRGVGYVLK 225


>gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 227

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221


>gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 219

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 126/222 (56%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M+ILL+ED+  L ++I  +L+    N YV D   DG E   F E   +D IILDL L DI
Sbjct: 1   MKILLVEDNLDLNNTIREVLE---LNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ +R   I TPV IL+  +  +DK+ GL  GADDYI+KPF+ +EL+ARIRAI R
Sbjct: 58  DGLEVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     + +++  +L ++L  K V+  G  + LT K Y ++E L   +   ++ E  L+ 
Sbjct: 118 RVSAEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + P  + +   I  LRK +      K  I+T+ G GY
Sbjct: 178 CWEITEVPSRETMRANIKNLRKLID---PDKKIIKTIEGVGY 216


>gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+     V   D G+DG+ L     FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    STPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     L  +   DL ++L +++    G RI L  +E++++E L       +T+ M L  
Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+         I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFDTP-LIHTIRNAGYMLR 224


>gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 220

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+   PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  ELLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  ++L  + E + V VT  G  G++     ++D ++LD+ L  I GFE
Sbjct: 4   KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+    ++DKV GL  GADDY++KPF+ EEL AR+RA +R+ + 
Sbjct: 64  VLKKIR-EHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H  + ++   D+ ++L    V   G +I LT KE+ ++E L    N  LT+E  L  ++ 
Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                +  I+DV+I  LR K+ +    K  I T+ G GY L+E+ KDE
Sbjct: 183 YDYYGDTNIVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYTLKED-KDE 228


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +   L+ +   V     GE+ I L K  E+D ++LD+ L    G+EV
Sbjct: 4   VLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDGYEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+   
Sbjct: 64  CQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +        +++ GDL ++ D++ V +    I+LT KE+ ++ELL+       ++E  L
Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182

Query: 176 NHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++  +  D  +V+ +DV + +LR+K+  +     Y+ T WG GY
Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGY 228


>gi|291615861|ref|YP_003518603.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150891|gb|ADD75475.1| QseB [Pantoea ananatis LMG 20103]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD+ +  +++  L++  ++V   D   DG+     +    +  ++LDLGL   
Sbjct: 10  MRVLLVEDDEMIGANLQQALEAAGWSV---DWVRDGVYAQNAWSEGGYSCVLLDLGLPRD 66

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR  R    +TPV IL+   ++  +V+GL  GADDY+ KPF+ +E++AR+RAI R
Sbjct: 67  DGLQVLRRARGRGDATPVLILTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITR 126

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A S++ +GD+ +++  + V  +G R  LT +EY ++  L  R    L++E   N 
Sbjct: 127 RHHGSADSVLGSGDVQLDMLTREVLYKGQREQLTAREYALLYALLERPGAILSREQLENR 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y   +E     +DV I  +R+KL N     + I  V G G+
Sbjct: 187 IYGWGEEVSSNAVDVLIHGMRRKLDN-----DVIRNVRGLGW 223


>gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E +       GE+ +     +  D ++LDL L  + GF
Sbjct: 4   VRLLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLMLPGVDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 64  GVLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  +S++   DLS++ D + V      + LT  EY+++  L  +  T LTK   L+H+
Sbjct: 124 GPAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++        ++++ + +LR+KL +   G+  I TV G GYVLR+
Sbjct: 184 WEYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVLRQ 226


>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ LA +I   L+   F V +   GE G+   +  ++DAI+LDL L  + G 
Sbjct: 1   MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A   TP+ IL+     E +  GL  GADDY+ KPF+ + L+AR+ A++RR+ 
Sbjct: 61  EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V GDL ++   +TV      I LT +E+ ++E L     +T +K   L+H++ 
Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E  +++V++  LR+K+     G   I TV G GY++
Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPF-GTGSIRTVRGHGYLM 220


>gi|199596926|ref|ZP_03210359.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507695|ref|YP_003170446.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|199592059|gb|EDZ00133.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147622|emb|CAR86595.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649042|dbj|BAI41204.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+IEDD  L  SI   ++  +F+     L G DG+ L +   FDAI+LD+ L ++ GF
Sbjct: 6   KILVIEDDPDLNESIVDFIR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  ++ TPV IL+   ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ 
Sbjct: 64  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 122

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH   +  +  G   V+L+   V +    + L GKE+ ++  L   + T +TK+   + L
Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  V +++V++  LRKKL        +I+T+   GY+ +E
Sbjct: 183 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 226


>gi|53716964|ref|YP_105798.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67639655|ref|ZP_00438496.1| transcriptional regulatory protein RstA [Burkholderia mallei GB8
           horse 4]
 gi|124382030|ref|YP_001023922.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126447802|ref|YP_001078701.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|166999292|ref|ZP_02265133.1| transcriptional regulatory protein RstA [Burkholderia mallei
           PRL-20]
 gi|254179197|ref|ZP_04885849.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254200613|ref|ZP_04906978.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254204635|ref|ZP_04910988.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254356571|ref|ZP_04972846.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52422934|gb|AAU46504.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124290050|gb|ABM99319.1| transcriptional regulatory protein RstA [Burkholderia mallei NCTC
           10229]
 gi|126240656|gb|ABO03768.1| transcriptional regulatory protein RstA [Burkholderia mallei NCTC
           10247]
 gi|147748225|gb|EDK55300.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147754221|gb|EDK61285.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148025598|gb|EDK83721.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|160694524|gb|EDP84534.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|238520240|gb|EEP83702.1| transcriptional regulatory protein RstA [Burkholderia mallei GB8
           horse 4]
 gi|243064600|gb|EES46786.1| transcriptional regulatory protein RstA [Burkholderia mallei
           PRL-20]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVRAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A  + PV IL+  S + D+V GL++ ADDY++KP     LVAR RA++RR + 
Sbjct: 69  VYRRIR-AFSNVPVLILTARSDVYDQVAGLETDADDYVTKPIEPRVLVARARALLRRVQP 127

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           RIL+++DD ALA  I ++L++E F       G+ G  L  F++   D ++LDL L  + G
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFC--GDGGQALAAFHDAKPDLVLLDLMLPGLDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V   +R A+   P+ +L+  S   D V+GL+SGADDYI KPFN +ELVARIR  +R +
Sbjct: 62  IQVCDLIR-AESGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  L+  GDL V+++   V     RI+LT  E+ ++  L+ R     T+EM L  ++
Sbjct: 121 AAASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + + + ++++V + +LR K+ +       + TV G GY
Sbjct: 181 GYQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGY 220


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V   G  G+   +    D I+LD  L  I G E+
Sbjct: 5   ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGISGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+    I D+V GL +GADDYI KPF+ EEL+AR+RA +RR+  +
Sbjct: 65  CKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSEN 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +N  ++ V      I LT KE+ ++E L       LT+E  L  ++   
Sbjct: 125 NADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL N    K  I+TV G GYVLRE
Sbjct: 185 FMGDSNIIEVYVRYLRLKLENNQ-EKRLIQTVRGIGYVLRE 224


>gi|325568393|ref|ZP_08144760.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158162|gb|EGC70315.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 23/233 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE-----DGIELCKFYE-----FDAIIL 50
           +++L+IEDDK L         SEN    V+++GE     DG E    YE     +D IIL
Sbjct: 2   IKLLVIEDDKTL---------SENMKEIVSEIGEVTQAYDGSE--GLYEAETGIYDLIIL 50

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DL + ++ G+EVL ALR   + TPV IL+    +EDKV G Q GADDY++KPF +EEL+ 
Sbjct: 51  DLMMPEMNGYEVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLM 110

Query: 111 RIRAIVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RI+A+++RS G   ++ +    L  NL    V  QG  + + GKE++++      +N  L
Sbjct: 111 RIKALLKRSLGLFNENTLEYNGLLCNLGTNEVSYQGELLPIQGKEFELLLYFLQNRNIIL 170

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           TKE   + ++    E  + +++V++  LRK L      K  I T+   GY+++
Sbjct: 171 TKEQIFDRIWGFDSETTLTVVEVYMSNLRKHLRQTGIDKE-IRTLRNVGYIMQ 222


>gi|255034386|ref|YP_003085007.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254947142|gb|ACT91842.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +A +I  +L+SENFN  +   G  G ++     +D ++LD+ L  + GF+V
Sbjct: 7   VLIIEDDLRIAQNIYRVLQSENFNADIARDGLTGKKMALDGRYDLVLLDINLPGMNGFDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +   K   PV +L+    IEDKV GL +GA DYI KPF+  ELVARI A +R S   
Sbjct: 67  CRHIGEFKPLLPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAG 126

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++   DL +N+D K V   G  I LT KE+ ++E   L   T ++K   + ++
Sbjct: 127 RLDAGNRVLGIADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNI 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +P    ++V+I  LRKK+      K  I+T  G GY+L EN
Sbjct: 187 WHLNFDPGTNFVEVYINYLRKKIDKGFDVK-LIQTRPGLGYILMEN 231


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL L+ E + V V   G  G+   +  + D +ILD  L  + G E+
Sbjct: 5   ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVSGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+    + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQEE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DLS+N   + V      I LT KE+ +++ L       LT++  L  ++   
Sbjct: 125 DPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  II+V++  LR KL  A G K  ++TV G GYVLRE++
Sbjct: 185 FMGDSNIIEVYVRYLRLKL-EANGEKRLVQTVRGVGYVLRESS 226


>gi|317054450|ref|YP_004118475.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316952445|gb|ADU71919.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 234

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/234 (37%), Positives = 131/234 (55%), Gaps = 6/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED    A  I   L+  +F V V   G DG+ L   +E+D  ILD+ L  I G+
Sbjct: 1   MRLLLVEDQTTAADYIAKGLRENDFVVDVAANGVDGLHLLLTHEYDLAILDVMLPGINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++L   R A   TPV  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR R I+RR +
Sbjct: 61  KLLEMARQADRKTPVMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARTRVILRRQT 120

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G+     +S +  GDL ++     V   G+RI LT KE+ ++ LL  R    L++ +  
Sbjct: 121 PGNVTVSDESQLQIGDLLLDFVKHKVTRAGNRIDLTQKEFLLLSLLMRRSGEVLSRTVIA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             ++D   +PE  +IDV I +LR K+ +    K  + T+ G GYVL E    +T
Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKIDDNYEMK-LLHTIRGAGYVLEEKEHADT 233


>gi|217962570|ref|YP_002341142.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098539|ref|YP_002532597.1| response regulator [Bacillus cereus Q1]
 gi|217067771|gb|ACJ82021.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242598|gb|ACM15308.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   LK E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 137/236 (58%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G+ G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A+S+          I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|28378254|ref|NP_785146.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254556461|ref|YP_003062878.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308180403|ref|YP_003924531.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271089|emb|CAD63994.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254045388|gb|ACT62181.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308045894|gb|ADN98437.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E +++ V   G  G++     +FDAI+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDIQVEYNGRKGLDAALAEDFDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      +
Sbjct: 63  VCRRVREVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DL++  +   V+     I+LT +EY+++  L    N  L +++ L
Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 NKVWGYESEVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  I L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR +K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +++I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+ G++L    +FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RG A        ++  GD+  +L    V V+G +I LT KE++++     RK   + ++ 
Sbjct: 123 RGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKFQE 232


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ +   + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                ++         DL +NL   +V   G  + +  KE +++  L+   N   T+E  
Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV + +LR+K+ + A     + TVWG GY
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDHANWS--LATVWGIGY 227


>gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+IEDD +A ++ ++ + +S +   +  D G+DG+ +     +DA+++D  L  + G
Sbjct: 1   MRILVIEDDLEAASYMLKGLRESGHVVEHAAD-GKDGLYMAAAGSYDAMVVDRMLPGVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ LR    +TPV  LS M  ++D+VRGL++G DDY++KP+   EL+AR+ A+ RR+
Sbjct: 60  LTIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRA 119

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++L  ++V   G  I L  KE+ ++E L       +T+ M L ++
Sbjct: 120 GAVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +IDV I +LR+K+      +  + TV G GY LR+
Sbjct: 180 WDYSFDPQTNVIDVHISRLRQKIDKDF-DRPLLHTVRGSGYSLRD 223


>gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
 gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 2   MRILIVEDDPVLADGLQVGLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR A+ + PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 62  DLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A        ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 122 ALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR AK   P+ +LS    + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCRELR-AKSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    L++NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+K+ +  G    + TVWG GY
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPGWG--LSTVWGIGY 228


>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F +     GE G+ + +  +FD I+LD+ L  + GFE
Sbjct: 3   RILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLRALR  K  TP+ +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR++ 
Sbjct: 63  VLRALRQRK-QTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQT 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A  ++  GDL ++   +        I LTG E+ ++  L  +    +TKE    
Sbjct: 122 TQQDSQANEMMQFGDLRLDPTRQETYCNEQLIILTGTEFSLLFHLIEKSGELVTKESLSE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++   +  P  + +D+ +  LRKKL     G+  ++T+ G+GY+
Sbjct: 182 NVLGKKLMPFDRSLDMHLSNLRKKLPERQDGRPRVKTLRGKGYI 225


>gi|293393164|ref|ZP_06637479.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291424310|gb|EFE97524.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 220

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + + L SE +         +   L    ++  +ILDLGL D+ G 
Sbjct: 1   MKLLIVEDDELLLQGLAMALASEGYACDSALNAAEANALIVSSQYSMVILDLGLPDLDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I  PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  SLLRQWRRQHIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALVELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   DL++NL ++ V VQ   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GHSDNLLQLDDLTLNLSSQQVYVQQQPVDVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     GK+ I TV G GY L
Sbjct: 181 WNDDLGSNTLEVHVHNLRRKL-----GKDRIRTVRGIGYRL 216


>gi|300021884|ref|YP_003754495.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523705|gb|ADJ22174.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  ++  L    ++V V++ G++G +      FD +++D  L  + G 
Sbjct: 1   MRILLIEDDDQTAKLVKQSLVKHGYDVDVSNDGQNGFKHAVVGGFDVLVIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A++S+P+  L+ +  IED++ G +SGADDY+ KPF   ELVAR+ A+ RR  
Sbjct: 61  SIVQRLRAARVSSPILFLTAVGGIEDRIEGFESGADDYLVKPFALGELVARVAALGRRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H        DL V+L  + ++  G  I L  +E++M+E+L   +   +T+ M L  ++
Sbjct: 121 IAHEDFYYRIADLEVDLIKREIKRGGEIIRLQPREFRMLEILVRNRGRVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P+  I+   + +LR K+ +  G    I TV G GY
Sbjct: 181 DLELDPKTSIVQTNVSRLRLKI-DRPGDIPLIRTVRGLGY 219


>gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   L    + V     GE G+ + +   FD +I+D  +  + G 
Sbjct: 1   MRILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR     TPV  LS +  I D+V GL++GADDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  QVVETLRREGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221


>gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +++ L    F +     G+ G +      +DA+ILDL L +I G 
Sbjct: 1   MRILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPNIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILKYWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     ++ GD+ ++  A TV  QG  + L GKE  ++ L        L++ +    LY+
Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  LR+KL     G  +I+TV G GY L
Sbjct: 181 WDEEVSSNSVEVHIHHLRRKL-----GAKFIQTVHGVGYRL 216


>gi|188993478|ref|YP_001905488.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735238|emb|CAP53450.1| Two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA +I   ++ +++ +               + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLADAICDGVRQQSWTIDHVGTAAAARTALVEHHYTAVLLDIGLPGDSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R     TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RAI RRS 
Sbjct: 61  TVIRYMRGHYDPTPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAIARRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G++SV+  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL + A     I T++G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDEA-----ISTIYGQGYMI 216


>gi|258538863|ref|YP_003173362.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|257150539|emb|CAR89511.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 231

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+IEDD  L  SI   ++  +F+     L G DG+ L +   FDAI+LD+ L ++ GF
Sbjct: 6   KILVIEDDPDLNESIVDFVR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  ++ TPV IL+   ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ 
Sbjct: 64  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 122

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH   +  +  G   V+L+   V +    + L GKE+ ++  L   + T +TK+   + L
Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  V +++V++  LRKKL        +I+T+   GY+ +E
Sbjct: 183 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 226


>gi|119475918|ref|ZP_01616270.1| response regulator [marine gamma proteobacterium HTCC2143]
 gi|119450545|gb|EAW31779.1| response regulator [marine gamma proteobacterium HTCC2143]
          Length = 221

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ALA ++ + L++E F+V     G + I   K    D IILDLGL DI G 
Sbjct: 1   MKLLLVEDDEALAKALLIALRNEGFSVDHVATGNEAIAHGKNNIADIIILDLGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  KI TP+ IL+    + DK+  L  GADDY+SKPF  +EL+ARIRA+ RR  
Sbjct: 61  TVLKELRANKIVTPMLILTARDDLSDKITALDGGADDYLSKPFEIKELMARIRALGRRMN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I  G +S++     VEV      L+ +EY +++ L        TK    N LY 
Sbjct: 121 SSISSVITAGRVSLDSANHHVEVDAIETPLSRREYTVLKALMENVGRIQTKAALENKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK+      + +I+TV G GY +
Sbjct: 181 WGEEISSNAIEVHISNLRKKMP-----EGFIKTVRGVGYTI 216


>gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
 gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
          Length = 219

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD+AL   +   L +  + V     GE+   L +   +DA++LDLGL    G 
Sbjct: 1   MRVLVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I TPV IL+   + ++KV G+ +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++     V V G  + LT  E ++++ L   +   +++     H+Y 
Sbjct: 121 GHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   I+VF+ +LR+KL     G + I T  G GY
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GVDVIRTERGLGY 214


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K LA+ I+  L    + V V   GE+ +      E+D IILDL L  I G 
Sbjct: 1   MKLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R       + ILS  + IED+V GL  GA+DY+ KPF+  EL ARIR+++RR  
Sbjct: 61  EVLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G + ++     V + G  + +T KEY ++  L   KNT ++ E  + H++D
Sbjct: 121 IQENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     +   +  LRKK++  +  K  I+TV G GY++ E   D
Sbjct: 181 SEVDLFSNTLKYHMHSLRKKIAEYS-EKEIIKTVRGCGYIVEEQDND 226


>gi|254224639|ref|ZP_04918255.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|125622702|gb|EAZ51020.1| DNA-binding response regulator [Vibrio cholerae V51]
          Length = 218

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDIRDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  GDL ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I  V G GY++
Sbjct: 181 WEEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216


>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 251

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/245 (34%), Positives = 131/245 (53%), Gaps = 27/245 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +++  I L L+ E F+  + + GE+ + +   Y  D IILDL L  I G+E
Sbjct: 6   RILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR+ + S PV +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCRRLRM-RSSVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRCPK 124

Query: 119 SRGHAQ---------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
            RG A                      + I   +L +N    +V  +G  + +  KE ++
Sbjct: 125 KRGDAALPGESAETVRRAEPEGGLRSGNYIEYPELIINQSNYSVFYRGKPVEMPPKELEL 184

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +  L+   N   T+E  L+H++      + + +DV I +LR+K+S    G   I TVWG 
Sbjct: 185 LYFLASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKIS--GNGAWEIATVWGI 242

Query: 218 GYVLR 222
           GY  R
Sbjct: 243 GYKFR 247


>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 240

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 130/237 (54%), Gaps = 19/237 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------------FDA 47
           MRILL+ED+  LA  +  +L  E ++V +   GE  IE  +  +             +D 
Sbjct: 1   MRILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDL 60

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           +ILD  L  + G E+ + +R  + +TP+ +L+   +++++V+GL +GADDY+ KPF   E
Sbjct: 61  LILDWILPRLSGLEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRE 120

Query: 108 LVARIRAIVRRSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
           L+AR+RA++RR+        +  ++   DL ++   +    +G  I+L+ KE Q++E L 
Sbjct: 121 LLARVRALLRRTAAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLM 180

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R    L+ E    HL+ G D+P   ++   +  LR+K+  AAG    I TV+G+GY
Sbjct: 181 TRSQQLLSHEEIYQHLWPGEDKPSSNVLAAQVRLLRRKI-EAAGEAPLIHTVYGKGY 236


>gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
          Length = 218

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKK       K  I+ + G GY+L
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYIL 216


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ALA  + + L+ E + V     G + I   +    DA++LD+ L D+ G 
Sbjct: 65  VRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGL 124

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 125 TVLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 184

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   +S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 185 AAAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDR 244

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++++I  LR+K+   AG    I T  G GY+++  
Sbjct: 245 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 289


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR +K  TP+ +++   S+ D++ GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +++I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 245

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L+ E + V V   G +G+ L K      I+LDL L DI GF V
Sbjct: 14  ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR   + TPV IL+ M    DKVRG + GADDY++KPF   E +AR++A++RRSR  
Sbjct: 74  LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRTA 133

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A +    G+++++L  ++V ++G  + L  +EY ++  L  R     ++E
Sbjct: 134 KPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASRE 193

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  ++   D    + +D  + +LR+KL        ++ TV   GY
Sbjct: 194 ELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGY 240


>gi|297579859|ref|ZP_06941786.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297535505|gb|EFH74339.1| DNA-binding response regulator [Vibrio cholerae RC385]
          Length = 218

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  GDL ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N ++ V G GY++
Sbjct: 181 WEEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L+ E ++V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 20  VRVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RRS 
Sbjct: 80  EVLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSG 139

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +  GDL+++ D+  V      + LT  E++++  L       L+K   L+ 
Sbjct: 140 MTAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LRKK+ N  G    I TV G GYVL+
Sbjct: 200 VWHYDFGGQSNVVELYISYLRKKIDN--GRAPMIHTVRGAGYVLK 242


>gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD   A +++  L  + F   VT  GE G++  +  EFD ++LD  +  + G  
Sbjct: 3   KVLIVEDDVEAALTMQKGLSEQGFESVVTHDGEAGLKALREGEFDVVVLDRMMPGLDGVS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +L   R   +  PV  LS +  +ED+V GL++GADDY+ KP+   ELVAR+ A++RR   
Sbjct: 63  MLEIARSEGMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++ +  GDL +NL ++ V+     I L  +E+Q++E L      ++T+ M L  ++ 
Sbjct: 123 GAVETTLRVGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWA 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P+  +IDV I +LR KL      +  + TV G GY L+
Sbjct: 183 YHFDPQTNVIDVHISRLRAKLDKGF-DRAMLHTVRGEGYQLK 223


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +LA  + + L+ E + V     G   +   + +  DA+ILD+ L D+ G 
Sbjct: 22  VRVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 82  SLLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 141

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 142 AALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDR 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++++I  LR+K+   AG    I T  G GY+++  
Sbjct: 202 VWSYDFGGQANVVELYISYLRRKID--AGRAPMIHTRRGAGYLIKPG 246


>gi|90411546|ref|ZP_01219556.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90327436|gb|EAS43789.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++L L   +F     + G DG+      E+D I+LD+ L D+ G+
Sbjct: 1   MKILIIEDETKLGKYLQLGLNESSFTTDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  ++    + P+ +L+   S+ED+V+GLQ GADDY+ KPF   EL+ARI+  VR++ 
Sbjct: 61  EILTKIKAYYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +T  DL ++L  + V      I LT KE+ ++ELL  R+   L+K    + ++
Sbjct: 121 NVATKTTLTIADLHIDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LRKK+ +    K  I T+ G GYV+
Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKVDDPFEFK-LIHTLRGMGYVM 221


>gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 126/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  + + V V   GE G    K  ++D ++LD+ L ++ G 
Sbjct: 1   MRILLVEDDVRLAETLAEALTDQRYMVDVVTDGEAGWNQAKMLDYDLLLLDVMLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR    S PV +L+   ++ DK+ GL +GADDY+ KP + +EL ARIRA++RR  
Sbjct: 61  SLCHRLRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++  G+L +N     V    + +HLT KEY ++ELL       L++ + + H++ 
Sbjct: 121 VSSPPILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   + V +  LR+KL  A   +++IETV G GY L++
Sbjct: 181 LESPPEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRLKQ 223


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V V   G D +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A+   PV +LS    + D+VRGL  GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++   +     G  + L+ KE+ ++E L       L++   L+H++D
Sbjct: 121 QERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    ++D ++  LR+K+    G    +ETV G GY LR NA
Sbjct: 181 LAYDRNSNVVDQYVAYLRRKIDKPFGVAQ-LETVRGAGYRLRVNA 224


>gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ LA  I    ++E F V +   G+ G  L +   +D +ILD+ L  + GF
Sbjct: 1   MKLLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPYLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+ +  + DK  G  SGADDY+ KPF   EL+ R++A+ RR  
Sbjct: 61  ELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRHY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++   DL ++ DA+ V   G  I LT  EY ++E L   +   +++      +++
Sbjct: 121 RERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   +IDV++  LRKK+      K  + TV G GYVLRE
Sbjct: 181 VNLATSTNVIDVYMGYLRKKVDRDFASK-LLHTVVGMGYVLRE 222


>gi|229553724|ref|ZP_04442449.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229312895|gb|EEN78868.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 237

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 134/225 (59%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+IEDD  L  SI   ++  +F+     L G DG+ L +   FDAI+LD+ L ++ GF
Sbjct: 12  KILVIEDDPDLNESIVDFVR--DFSQPEAALTGADGLYLAEEGIFDAIVLDIMLPELNGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  ++ TPV IL+   ++ DKVRG + G DDY++KPF++EEL+ R++A+++R+ 
Sbjct: 70  DLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT- 128

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH   +  +  G   V+L+   V +    + L GKE+ ++  L   + T +TK+   + L
Sbjct: 129 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  V +++V++  LRKKL        +I+T+   GY+ +E
Sbjct: 189 WGFDSDTAVSVVEVYMSNLRKKLK-PMQADVWIKTIRNVGYIFQE 232


>gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis
           HI4320]
 gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906]
 gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320]
 gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+IED+  L H + +  +     V   D  +D  E   F      D  I+DLGL D 
Sbjct: 1   MRILIIEDNILLRHHLSVQFRDAGHQV---DAAQDAKEADHFIAESTPDVAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   I+ P+ +L+   S ++KV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGISLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++      ++L  K   + G +I LT  EY ++E L   +N  ++K++ +  
Sbjct: 118 RNMGIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   ++ E   IDV + +LRKK+       + I TV G+GY
Sbjct: 178 LYPDAEQRESHTIDVLMGRLRKKILQKYDN-DVIVTVRGQGY 218


>gi|121281851|gb|ABM53484.1| putative two component transcriptional regulator winged helix
           family [uncultured bacterium CBNPD1 BAC clone 67]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED++ L + ++  L    F   VTD      D  +L +   FDA+++D GL D 
Sbjct: 1   MRLLLVEDERRLGNLLQASLHEAGF---VTDRALDLADARDLARRERFDALLVDRGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E++R LR A  + PV +L+    + D+V GL++GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLELVRELRAAGNAVPVLVLTARDGVPDRVAGLENGADDYLVKPFAIEELIARVRAVLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G     +  GD+  +   + V +    + L   E   +E L  R    +T+E+ ++ 
Sbjct: 118 RPGGALGQELRAGDIIYDAIERVVIIGARNLVLPRHELATLECLMRRLGRVVTREILIDA 177

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LY GRD EP    + V I  LR+KL   AG +  I T  G GY+LR
Sbjct: 178 LY-GRDGEPASNAVPVHIHNLRRKLQE-AGAQARIITFRGLGYMLR 221


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF +
Sbjct: 1   MLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGM 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR+ GH
Sbjct: 61  LRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRA-GH 119

Query: 123 A---QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   QS  VT  DL ++ D + V   G  + L+  E+ ++    +   T L+K   L+H+
Sbjct: 120 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     EV +++ ++  LR+K+         I T+ G GYV+RE
Sbjct: 180 WNYDFGGEVGVVESYVSYLRRKIDTTE--PRLIHTLRGVGYVMRE 222


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S + +L+ + F+V   + G DG++  + Y FD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGA 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  +Q+L   G L ++ D    + +G  I L+ +E+ ++  L    N   +K     
Sbjct: 123 LKQQKQSQTLSYAG-LELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   E     I+V+I  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDLDSEINSNTIEVYIHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|300767184|ref|ZP_07077096.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300495003|gb|EFK30159.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E +++ V   G  G++     +FDAI+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKYEGYDIQVEYNGRKGLDAALAEDFDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      +
Sbjct: 63  VCRRVREVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDL 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DL++  +   V+     I+LT +EY+++  L    N  L +++ L
Sbjct: 122 ESEQQSTKQTTVTYKDLTIEKENLVVKRGDEVINLTKREYELLLTLMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 NKVWGYESEVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae]
 gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A  S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SSLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +    K  + T  G GY+L  +A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEAK-LLHTCRGMGYML--DAQDE 227


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  E+D I+LD+ L    GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQMIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++I+  D+ ++  ++ V V G  I+LT KE+ ++ELL+   +   ++E  LN
Sbjct: 123 SVKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYFR 228


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 20  VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 80  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  + DVFI  LR+KL    G    I TV G GYVLR+
Sbjct: 200 YDFDVDTNVADVFISYLRRKLER-DGLPRVIHTVRGIGYVLRD 241


>gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L   +       N  V V   G+  +E+   Y FD ++LD+ L DI G 
Sbjct: 1   MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR +K   P+ +L+ + + E+ V GL SGADDY+ KPF   EL AR+ A+ RR+ 
Sbjct: 61  EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  GDL +N  AKTV+  G  I LT KE++++  L       ++++  L+++
Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +    ++DV+I  LRKK+      K  I T+ G GYV++
Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTK-LIHTMKGLGYVIK 223


>gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  SI   L+   +       G +G+ELC    +D I+LDL L    G 
Sbjct: 1   MHILIIEDEEQLCCSIAEGLRMNGYETDTCFDGNEGLELCMTESYDLILLDLNLPGTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R +  +TPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  DILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +  +   +   V    + LT KE  ++E   L +   ++ E  + HL+D
Sbjct: 121 IQEDICLKCGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEMIEHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G        I V I  LRKKL  AA G + I+   G+GY+L E
Sbjct: 181 GSVNSFSNSIRVHISSLRKKL-RAALGFDPIQNKIGQGYILME 222


>gi|224588354|gb|ACN58978.1| two-component response regulator [uncultured bacterium BLR19]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++ L +S+    KSE      +   E+G+E    Y++D II D+GL D  G 
Sbjct: 1   MKVLIIEDEEELINSLRTFFKSEGHICETSSSFEEGMEKINLYQYDCIIADIGLGDGNGL 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++++ L+  + + T V I+S  SS+EDK+ GL+ GADDY++KPF+  EL AR+++++RR 
Sbjct: 61  DIVKELKGKRNNNTGVIIISAKSSLEDKITGLEIGADDYLTKPFHLSELNARLKSVLRRR 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I+  ++ +  D   VEV G  I LT KEY ++      K   L KE  + HL+
Sbjct: 121 MFDGEQAIIFNEIKIAPDTMKVEVNGKPIVLTKKEYDLLIYFISNKTKILPKETIVEHLW 180

Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                       +   +  LRKKL +  GG++YI+TV+  GY
Sbjct: 181 GDYISTSDSYDFLYTHVSNLRKKLMD-NGGEDYIKTVYKIGY 221


>gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 222

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  +   V   G +  ++    +FD +ILDLGL    G  
Sbjct: 3   RILIAEDETRIAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VL  +R      PV IL+    I DKV GL+SGADDY++KPF  EEL+AR+RA +R    
Sbjct: 63  VLEEMRGRGERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLRDTGN 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   Q ++ +G++S++L  + V   G  + L+ +E+ + E         +++E  L+ +
Sbjct: 123 GRTQEQLVLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LR+KL+      + IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRRKLNT-----DRIETVRGMGYRLR 221


>gi|225027798|ref|ZP_03716990.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
 gi|224954848|gb|EEG36057.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 132/228 (57%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK----FYEFDAIILDLGLTD 56
           MR+L++ED+K L + ++  L+ +    Y  D+  DG E+ K     Y +D I+LD+ L  
Sbjct: 11  MRMLIVEDEKDLCNILKKRLQKD----YTIDICMDG-EIAKDYLNTYTYDIILLDIMLPK 65

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G  +L+ LR  K +TPV +L+  SSIE++V GL SGADDY+ KPF  EEL AR+R ++
Sbjct: 66  IDGITLLKWLRNQKKTTPVLLLTAKSSIEERVNGLDSGADDYLIKPFAFEELQARLRVLL 125

Query: 117 RRS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+       +++  DL ++   K V   G  I LT KEY++++ +       L+++   
Sbjct: 126 RRNIAADPSDILIYEDLVMDTKKKKVSRNGKEISLTTKEYKLLQYMMRNPGHVLSRDQLE 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +D   E    IIDV+I  LRKK+ ++   K  I TV+G+GY L E
Sbjct: 186 QRGWDSTFEGGSNIIDVYIRYLRKKI-DSDYEKKLIHTVYGKGYCLGE 232


>gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A  I   L ++  +  +   G  G+   +   FD +I+D  L D+ G 
Sbjct: 1   MRILLIEDDAEMAGFIADALAAQGQDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R   +S P+ +L+ + +IED+V+GL SGADDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G + ++   +    +G RI L  +E++++E L  +++  +++ M L  ++ 
Sbjct: 121 SGLSDTGACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P+  I++  + +LR+KL NA    + I+TV G GY LR +A
Sbjct: 181 FHFDPQTNIVETHMSRLRQKL-NAGFDCDPIQTVRGVGYKLRSDA 224


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ALA  + ++L+ E F   +   G   IE  +  + D ++LDL L    G +
Sbjct: 4   KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  +   D V GL+SGADDYI KPF  +ELVARIRA +RR   
Sbjct: 64  VCREIR-AESRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GD+++++ A TV   G  I LT  E+ ++  L+ +     T+E+ L H++  
Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGY 220


>gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L  SI   L+ + + V + D G   +E+ +  ++D I+LDL L  I G 
Sbjct: 1   MKILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     T V ILS  SS+ D++ GL +GADDY+ KPF   EL ARIR ++RR  
Sbjct: 61  DLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRREY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H ++ +  G+L  +  A+ V V   +++LT KE  ++E L       ++ E  + H +D
Sbjct: 121 IHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     + V I  +RKKL  A  G + I    G GY  ++++ D
Sbjct: 181 SNVDLFSNSVRVHIFSIRKKLREAL-GYDPISNKVGEGYCFKKDSDD 226


>gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 222

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL+IEDD  L  +I+  LK      Y  D  +DG+   +      + A +LDLGL  +
Sbjct: 1   MRILVIEDDALLGDAIQAGLKQSG---YAVDWMKDGVSADQALSTEAYAAAVLDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+ M ++ED+++GL +GADDY+ KPF+  EL AR+RA++R
Sbjct: 58  SGLEVLQRLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAARLRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G     +    + +   A  V  +   I L  KE+ ++  L L     L++      
Sbjct: 118 RASGKPAPALQVAGVEMEPAAHRVLYRNSAIELPAKEFAVLHALMLNAGRVLSRTQIEEQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +E E   ++V+I  LR+KL         IET+ G GY++
Sbjct: 178 LYAWGEEVESNAVEVYIHHLRRKLF-----PELIETIRGVGYLI 216


>gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 238

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 124/231 (53%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L   I+ ML  EN   Y+ D  +DG     + E     +   I D  L 
Sbjct: 1   MRLLLVEDEPDLGAIIQRMLNREN---YLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G E+ + LR    S PV IL+  S I+D V GL +GADDY+ KPF K EL+ARIRA+
Sbjct: 58  KISGLELCQRLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQG--HRIHLTGKEYQMIELLSLRKNTTLT 170
            RR+     S +  G L+++    +V     QG    I LT  E++++E      N TLT
Sbjct: 118 QRRALHIQPSQLQIGPLTLDYAKSSVFTSNSQGKPQTIPLTANEFRLLEYFMKHPNQTLT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  L++  D P   ++   I  LR+KL++  G K+ IETV G GY L
Sbjct: 178 RDQLLAQLWETDDAPISNVVSARIRLLRRKLAD-YGCKDLIETVHGFGYRL 227


>gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  +   L  E F V V   G DG+ L    ++D I+LD  L  I G 
Sbjct: 1   MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL ALR  K  TPV +L+    +ED+V+GLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 61  AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +   DL ++L  +     G RI LT KE+ ++ LL  R+   L++   
Sbjct: 120 PSVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++D   + E  +++V + +LR KL      K  + TV G GYVL
Sbjct: 180 ASQVWDMNFDSETNVVEVAVRRLRLKLDQPF-EKPLLHTVRGMGYVL 225


>gi|300689759|ref|YP_003750754.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299076819|emb|CBJ49429.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 224

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  LA  +   L+   F V     GE    L     +D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV IL+    I+DKV  L +GADDY+ KPF   EL+ARI+ +VRR+ 
Sbjct: 61  AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS +  ++T  + G  + L  +E+ ++E+L L+   T++K   +N ++ 
Sbjct: 121 PANAVELQCGDLSYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+   + I+++I +LRKKL ++A     I T+ G GY+LR+
Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAA---TIVTLRGLGYLLRD 220


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222


>gi|260598679|ref|YP_003211250.1| transcriptional regulatory protein TctD [Cronobacter turicensis
           z3032]
 gi|260217856|emb|CBA32382.1| Transcriptional regulatory protein tctD [Cronobacter turicensis
           z3032]
          Length = 226

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L +  F V     G     L +   +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALTNTGFAVDCVGDGLAAEHLLQNERYAVAVLDIEMPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   ++ D+V+GL  GADDY+ KPF   EL AR+RA+VRRS 
Sbjct: 61  EVLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q     G+L+ + DA   E+QG  + LT +E+ ++ +L  R+   +T++     ++ 
Sbjct: 121 GQVQEAQRLGELTFH-DAGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221
             D+   + I+++I +LRKKL  SN       I T+ G GYVL
Sbjct: 180 LSDDVSPESIEIYIHRLRKKLLASNVQ-----ITTLRGLGYVL 217


>gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 225

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+     G  G+ L    ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   ++ 
Sbjct: 58  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMH 117

Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R     QS+ VT DL V      L  + V + G  + L  KE+Q+++ L    N  +++ 
Sbjct: 118 R----GQSVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRT 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ GF
Sbjct: 20  VRVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VLR LR    S PV  L+   ++E++V GL  G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 80  QVLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSG 139

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++++  GDL+++ D+  V      I LT  E++++  L       L+K   L+
Sbjct: 140 FAVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILD 199

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +++++I  LRKK+   AG    I T+ G GYVL+
Sbjct: 200 RVWNYDFGGQANVVELYISYLRKKID--AGRAPMIHTLRGAGYVLK 243


>gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis]
          Length = 230

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+IED+  L H + +  +     V   D  +D  E   F      D  I+DLGL D 
Sbjct: 7   MRILIIEDNILLRHHLSVQFRDAGHQV---DAAQDAKEADHFIAESTPDVAIVDLGLPDE 63

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   I+ P+ +L+   S ++KV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 64  DGISLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++      ++L  K   + G +I LT  EY ++E L   +N  ++K++ +  
Sbjct: 124 RNMGIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   ++ E   IDV + +LRKK+       + I TV G+GY
Sbjct: 184 LYPDAEQRESHTIDVLMGRLRKKILQKYDN-DVIVTVRGQGY 224


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + LK + + V   + G   I+ C+ ++ DA+ILD+ +  + GF 
Sbjct: 15  KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  P   LS   S+EDK+ GL  G DDY++KPF+ EE+VAR++ ++RRS  
Sbjct: 75  LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A     S I   D+ ++ +   V   G+ + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     EV +++ ++  LR+KL    G K  I T+ G GYV+RE
Sbjct: 195 VWNYDFGGEVNVVESYVSYLRRKLDT--GDKRLIHTLRGVGYVMRE 238


>gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   GH I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223
                +  I++ +I  LRKK+         G+ +     IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIRE 240


>gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V + D G  G  L    ++D I+LD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GYVL
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYVL 221


>gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDDK L   +   L    F V     GE+G  L     +D +ILD+GL  I G 
Sbjct: 1   MRALVVEDDKDLNRQLAAALADAGFAVDTAADGEEGYFLGDTEPYDVVILDIGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R +    PV +L+      DKV G+ +GADDY++KPF+ EEL+AR+RA +RR+ 
Sbjct: 61  SILEQWRRSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH +S I  G + ++  +  V   G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VFI +LRKK+       + I+TV G GY + +  
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIPG-----DVIQTVRGLGYRMSQGP 220


>gi|330818556|ref|YP_004362261.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327370949|gb|AEA62305.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL IEDD  +A SI   L ++  +V V   G +GI      ++DA+ LD  L D+ G  
Sbjct: 3   KILTIEDDVLIADSIARQLHAQGHSVDVARTGREGIAKVMAGDYDAVTLDRMLPDLDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L  +R   + TPV ++S MS ++ ++ GL++G DDY+ KPF+ +E+VAR+  ++RR   
Sbjct: 63  ILSTMRGVGLDTPVLVMSAMSEVDQRIAGLRAGGDDYLVKPFSLDEMVARLEVLMRRRPR 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA++++    + ++L  +T  +    + L   E++++E +       LT+ M    ++
Sbjct: 123 NAHAETVLRANGIELDLVRRTAMLGARELDLLPTEFRVLEFMMRHAGRVLTRTMIFEGVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R +P   +IDV + +LR+K+ N +G    I T+ G GY+L
Sbjct: 183 GCRFDPGTNLIDVHVGRLRRKI-NRSGESPLIRTIRGAGYML 223


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+ I DD  +   +E +L      V   +      ++ +    D +I+D+ +    G +
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+ +L+  +  E +    ++GADD+ISKP    EL+AR+ + + RS
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606

Query: 120 R 120
           R
Sbjct: 607 R 607


>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD  +A  I   L     +V +V+D G D +  C + + D  ILD  L  + G
Sbjct: 1   MKILLAEDDPKIADYIVAGLSENGHSVDHVSD-GRDALSYCLYNDCDMAILDRMLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             VL+ALR +K S PV  L+ +  +ED+V GL +G DDY++KPF+  EL ARI AIVRR 
Sbjct: 60  LSVLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRK 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+  +   DL+++L A+T   QG+ I L  KE+ ++E+L       +T+   L  +
Sbjct: 120 SETTAEPSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTRTQLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   EP   +++  + +LR K+ +       I T+   GY +
Sbjct: 180 WNFNFEPNTTVVETHLSRLRAKI-DKPFDTPLIHTIRNTGYSM 221


>gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As]
          Length = 242

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    F   V   G DG+ L     +D I+LD  L    G+
Sbjct: 18  MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A+ +TPV +L+    + D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 78  SVLSELR-ARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V++  +  E  G R+ LT KE+ ++ LLS R    L++ +    ++D
Sbjct: 137 TRLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR KL         + TV G GYVL
Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVL 236


>gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
 gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKVLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 221


>gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 218

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGYGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKK       K  I+ + G GY+L
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYIL 216


>gi|116696499|ref|YP_842075.1| response regulator [Ralstonia eutropha H16]
 gi|113530998|emb|CAJ97345.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-----FDAIILDLGL 54
           MR+LL+EDD  +  S++L L+ E F V +V D G+ G+      +     +D I+LDLGL
Sbjct: 1   MRVLLVEDDAMIGDSVKLALRQEGFTVDWVRD-GDAGLAAASTAQHGQACYDLILLDLGL 59

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
              PG +VLR LR   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+ A
Sbjct: 60  PRRPGLDVLRTLRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHA 119

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + RR+ G A+ L+  GD+ +N   +    +G  + L+ +E+ ++  L  R     +    
Sbjct: 120 LARRAAGRAEPLVSYGDIVLNPTTREATHRGEPVRLSAREFALLAALMARPGKVWSVPQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              LY   DE     ++V+I  LRKK      G   I  + G GYV+
Sbjct: 180 QERLYGWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVV 221


>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
 gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y+   G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL        + E    
Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++  L++E + V +   G +G+EL +  E   +ILD+ L  + G +
Sbjct: 5   QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLPGMTGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + ++LR      PV +L+ +SSIEDKV GL+ GADDY++KPF  EEL+ARI A++RR R 
Sbjct: 65  LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L+       G  I LT KE   +ELL        ++E  L++++
Sbjct: 125 QRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++P   ++DV++ +LR K+ +       ++TV G GY L
Sbjct: 185 GMHEDPLTNVVDVYVRRLRSKI-DEGHPLALLKTVRGLGYRL 225


>gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+  A  +    +      +V DL  DG++   L +  ++D +++D  L  +
Sbjct: 1   MRLLIIEDDREAASYLSKAFREAG---HVADLAADGLDGYALAREGDYDVLVVDRMLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R+LR   + TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI  + R
Sbjct: 58  DGLSLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLAR 117

Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  G A   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L
Sbjct: 118 RRGGGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLL 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            H++D   +P+  +IDV + +LR K+      +  I TV G GY++R   +
Sbjct: 178 EHVWDYHFDPQTNVIDVHVSRLRAKVDKGF-ERPMIHTVRGAGYMVRAGGE 227


>gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 6   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 66  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 126 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 186 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 221


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G 
Sbjct: 45  VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 105 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 164

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 165 AADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 224

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 225 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 267


>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 126/225 (56%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55
           MRILL+ED+  L  +++   K+ N   Y+ D  +DG E       ++ E++  I+D  L 
Sbjct: 1   MRILLVEDEPDLGEALK---KALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+++ LR  + S PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GMSGIELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            RRS       +  GDL ++   +TV  QG++ + LT KE+ ++E      N  LT E  
Sbjct: 118 GRRSPQLVPQQLQRGDLILDYGTRTVFYQGNQTLSLTTKEFLLLEYFFNHPNQILTSEQI 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N L++  +EP   ++   +  LR+KL      KN IETV G GY
Sbjct: 178 RNQLWEMGEEPMSNVVAAQVRLLRRKLE-TVDCKNVIETVHGVGY 221


>gi|220923033|ref|YP_002498335.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947640|gb|ACL58032.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   L S+  +        D         +D ++LDL L D  G 
Sbjct: 1   MRILLIEDDLVLGEAVRDHLLSDGHSADWMKTVADAAAAITAAVYDLVLLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+  R     TPV IL+    I D++ GL +GADDY+ KPF+  EL ARI A+ RR  
Sbjct: 61  DFLQHRRSLGDVTPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARISAVGRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  GDL ++L A++V   G  + LT +E+ + E L  R N  L+K      LY 
Sbjct: 121 GNPNPLVTIGDLDIDLAARSVHKGGKPVPLTAREWSLFEALIQRPNALLSKTQLEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E E   I+V+I +LRKK+     G + IETV G GY L   A+
Sbjct: 181 FDAEVESNTIEVYIGRLRKKI-----GADVIETVRGMGYRLGLPAR 221


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A      L+   F V V + GE G+      EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICREVRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ + F V     G  G+++ + +  DAI+LD+ +  + GF 
Sbjct: 9   RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   +  PV  L+   S++DK+ GL  GADDY++KPF+ EE+V R+R I+RR+ R
Sbjct: 69  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128

Query: 121 GHA--QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A  QS  V   D+ ++ D + V  +G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE
Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 232


>gi|85706269|ref|ZP_01037363.1| two component response regulator [Roseovarius sp. 217]
 gi|85669042|gb|EAQ23909.1| two component response regulator [Roseovarius sp. 217]
          Length = 219

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  L  ++   + S+   V +VT L +      +   FD I+LDL L D  G
Sbjct: 1   MRILLIEDDTVLGAAVRDQIASDGQTVDWVTRL-DAAGAAVRGAAFDLILLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L+ALR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR 
Sbjct: 60  IGFLKALRARGEVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K    + LY
Sbjct: 120 SGNPNPIVTHGPLDIDLAARSVHRGGKPVQLTAREWALFEAFLARPGQLLSKAQLEDKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V + +LRKKL     G   +ET  G GY L
Sbjct: 180 AYDAEVESNTIEVHVSRLRKKL-----GAGIVETERGLGYRL 216


>gi|325914487|ref|ZP_08176831.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539257|gb|EGD10909.1| two component transcriptional regulator, winged helix family
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA++I   ++ +++ +               + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLANAICDGVRQQSWTIDHVGSANAAKTALVDHRYTAVLLDIGLPGESGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR    +TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RAI RRS+
Sbjct: 61  TVIRFLRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAITRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  GD+ V+  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPVLSQGDVCVDPSSRKVTRAGTWVALSAHEYRLLLALMERAGRVVTKDQLEESVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL     G   I TV+G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKL-----GDELISTVYGQGYMI 216


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 6   RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR A  + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 66  AARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  + ++   DL ++L  + V     R+ LT  E+ ++EL        LT+E  
Sbjct: 126 ASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++    EP    +DV++  LR+K + AAG    + TV G GY LR    +
Sbjct: 186 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYALRTGGPE 237


>gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F   V D G D I + +  + D +ILD+GL  I G E
Sbjct: 19  RALVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPR- 136

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             QS   T           G LS+++ A+ V +   +I LT  E+ ++E LS R    L+
Sbjct: 137 VLQSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLS 196

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  + DG       ++DV I  LR+KL + A    YI TV G GY
Sbjct: 197 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGY 245


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G 
Sbjct: 59  VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGL 118

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 119 SVLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 178

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 179 AADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 238

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 239 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 281


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TPV IL+      D V GL +GADDY++KPF   EL+AR+RA++R  RG 
Sbjct: 64  ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGT 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +++ +V G + ++ D++   +    +HLT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 122 SETPVVQG-VRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                K +D+ I  LR+KL + A    YI TV G G+
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGF 217


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 20  VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 80  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  + DVFI  LR+KL    G    I TV G GYVLR+
Sbjct: 200 YDFDVDTNVADVFISYLRRKLER-DGLPRVIHTVRGIGYVLRD 241


>gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK L++++++ L+  N+ V     G   I   +  + D +ILDLGL D  G 
Sbjct: 1   MRILLVEDDKPLSNALKVSLRKANYTVDCVYDGASAISTLRPSQNDIVILDLGLPDQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R      PV IL+      DK+ GL +GADDY+ KPF  +EL+AR+R + RR  
Sbjct: 61  IVLKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++S+I   ++S++    T+ +    +HL  +E  +++ L       L+K    + LY+
Sbjct: 121 TSSESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK+      +N+I T+ G GY +
Sbjct: 181 WGEEVSSNTIEVHISNLRKKMP-----ENFIRTIRGVGYCI 216


>gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56
           MRILL EDD+ L   I   L    F V   D   DG+    EL     + A +LDLGL  
Sbjct: 1   MRILLAEDDELLGSGIRAGLGQNGFQV---DWVRDGVAAERELATG-AYQAAVLDLGLPR 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +VLR +R  + +TPV +L+   ++  ++ GL +GADDY+ KP +  EL AR+RA+V
Sbjct: 57  QDGMDVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALV 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR+ G +++ +  G++ ++  A  V V G  + L+ +EY ++  L L     L++E    
Sbjct: 117 RRAHGQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQ 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            LY+   E     ++V I  LR+KL     G   IETV G GY +  +A
Sbjct: 177 RLYEWGSEINSNAVEVHIYHLRRKL-----GTPLIETVRGVGYRIARDA 220


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ + F V     G  G+++ + +  DAI+LD+ +  + GF 
Sbjct: 17  RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   +  PV  L+   S++DK+ GL  GADDY++KPF+ EE+V R+R I+RR+ R
Sbjct: 77  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136

Query: 121 GHA--QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A  QS  V   D+ ++ D + V  +G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE
Sbjct: 197 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 240


>gi|254483612|ref|ZP_05096835.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214036121|gb|EEB76805.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 222

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  L  S+E  L+ E++ V     GE          +D +ILDLGL ++PG 
Sbjct: 5   LRILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
           +VLR  R  K   PV +L+  ++++DKV GL SGADDY++KPF  +EL AR+R ++ RR 
Sbjct: 65  QVLRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRG 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +Q L   G ++++   + V  +G  + LT +EY ++E+L       +++      +Y
Sbjct: 125 EGRSQQLEARG-ITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIY 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +E     ++V+I +LRK+      G + IET+ G GY
Sbjct: 184 SWGEEVGSNTVEVYISRLRKRF-----GSDCIETMRGVGY 218


>gi|303234960|ref|ZP_07321584.1| putative KDP operon transcriptional regulatory protein KdpE
           [Finegoldia magna BVS033A4]
 gi|302493815|gb|EFL53597.1| putative KDP operon transcriptional regulatory protein KdpE
           [Finegoldia magna BVS033A4]
          Length = 242

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 138/241 (57%), Gaps = 15/241 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           RIL+IEDD+A+ + I   LK   FN    DLG +G E    +   ++D + +DLGL DI 
Sbjct: 6   RILIIEDDRAVRNLISNTLKINRFNY---DLGVNGSEALLLFTTNKYDIVFVDLGLPDID 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++  R    +TP+ ++S  S+ EDK+  L +GADD+++KPFN +EL+AR+R+ +RR
Sbjct: 63  GIDLIKKFREFS-TTPIIVISARSNDEDKIEALDAGADDFLTKPFNVDELLARVRSTIRR 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +R     +   GD+ ++  +++V V+G  IHL   EY ++ LLS      LT +
Sbjct: 122 LNYSENNRIDNNVIFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQ 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231
             L  ++    + ++  + V++  LRKK+   +  K YI+T  G GY ++R N  D   +
Sbjct: 182 YILKTIWVNYLDSDLSSLRVYMTSLRKKIEKVSCEK-YIQTHIGVGYKMIRVNKSDSEKK 240

Query: 232 Y 232
           Y
Sbjct: 241 Y 241


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + ++       D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR  + + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR +G
Sbjct: 63  VCRSLR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR-QG 120

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + L    +  G + +++D   V V+G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 DVEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+ +       I TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGY 222


>gi|212633628|ref|YP_002310153.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555112|gb|ACJ27566.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +   LK   +    TD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNTLLVEELLKQLKQAGYVTDTTDKISEADYLIKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   I TPV +L+  S   +KV G  SGADDY+ KPF+ +EL+ RI+A+++R+ 
Sbjct: 61  ELLERWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A +    +    ++++   ++V V  +   LT  E++++++  +     L+K    + 
Sbjct: 121 GKANTPNKQLTYAGVALDESQQSVTVADNTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|157963325|ref|YP_001503359.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848325|gb|ABV88824.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 224

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +   LK   +    TD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNTLLVEELVKQLKQAGYVTDSTDKVSEADYLIKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L + R   I TPV +L+  S   +KV G  SGADDY+ KPF+ +EL+ RI+A+++R+ 
Sbjct: 61  ELLESWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A +    +    ++++   ++V V      LT  E++++++  +     L+K    + 
Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 223

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+K  A  ++       F       G+DG+ L +   +D IILD+ L    G+
Sbjct: 1   MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR      PV  LS   ++ D+VRGL+ GADDY+ KPF   EL+AR R I+RR  
Sbjct: 61  EVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L       +G  I LT KE+ ++ LL  RK   L++ +    ++ 
Sbjct: 121 SRQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I+DV I +LR+K+ +    +  I TV G GYVL
Sbjct: 181 INFDSDTNIVDVAIRRLRRKVDDPF-ERKLIHTVRGAGYVL 220


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 135/228 (59%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I+  L+ E + V     GE+ +   K  ++D ++LD+ L    G +
Sbjct: 4   KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDY++KPFN  EL ARI+AI+RRS+ 
Sbjct: 64  VCQLVREFS-NIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQ- 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           HA+ +     I  G+L + ++++ V ++   ++LT KE+ M+EL +       +++  L+
Sbjct: 122 HAEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLD 181

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ GR+ P +V+ +DV + +LR+K+    G   YI T WG GY  ++
Sbjct: 182 TIW-GREYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYFKD 228


>gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+     V     G + +      E++ ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGSGVEEGLRDAGMTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA++RR+ 
Sbjct: 61  ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DLSV+    TV   G R  LT +E  ++  L   + T L++      LY 
Sbjct: 121 GRSVETIEYQDLSVDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   I+V +  LRKKL     G   I T+ G GYV+ + +
Sbjct: 181 WQEEVESNAIEVHVSNLRKKL-----GPGLIRTIRGVGYVVEKTS 220


>gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis
           z3032]
 gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter
           turicensis z3032]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+      +E  L+     V     G DG+ L   +++  IILD+ L  + G+
Sbjct: 1   MKLLLIEDNDKTRAWLEKGLREAGLVVDAVADGRDGLHLALEHDYALIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR AK +TPV  L+   ++ D+V+GL+ GADDY+ KPF+  EL+AR+RA +RR  
Sbjct: 61  QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L V  DL+++         G RI LT +E+ ++ LL+ R    L + +  + ++ 
Sbjct: 120 PAAATLQV-ADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E  ++DV I +LRKK+ +    K  IETV G GY  R NA +++
Sbjct: 179 INFDSETNVVDVAIRRLRKKIDDPFPLK-LIETVRGMGY--RLNAPEQS 224


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V + G  G+   +    D I+LD  L  I G ++
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR+   
Sbjct: 66  CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+   DLS+N + + V      I LT KE+ ++E L       L+++  L  ++   
Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225


>gi|116494259|ref|YP_805993.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637593|ref|YP_001986759.1| Two-component system regulator [Lactobacillus casei BL23]
 gi|239629641|ref|ZP_04672672.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065765|ref|YP_003787788.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104409|gb|ABJ69551.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190711895|emb|CAQ65901.1| Two-component system regulator [Lactobacillus casei BL23]
 gi|239528327|gb|EEQ67328.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438172|gb|ADK17938.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381643|gb|AEA53119.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327384810|gb|AEA56284.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 231

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 134/230 (58%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+IEDD  L  SI   +++  F      L G DG+ L +   FDAIILD+ L ++ GF
Sbjct: 6   RILVIEDDPDLNESITDFIRA--FADPEAALNGADGLYLAEEGIFDAIILDIMLPELNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  +I TPV IL+   ++ DK+ G + G DDY++KPF++EEL+ R++A+++R+ 
Sbjct: 64  DVLKKLRAKQIKTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRT- 122

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH      +  G   V++ +  V +    + L GKE+ ++  L   + T +TK+   + L
Sbjct: 123 GHFFDDDGLTAGPFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +    E  V +++V++  LRKKL      +++I+T+   GY+ +E    E
Sbjct: 183 WGFDSETAVSVVEVYMSNLRKKLK-PLKVEHWIKTIRNVGYIFQEPEGSE 231


>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 685

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ L  ++   L+ + + V   D G  G+E  +   +D +++D+GL  + G 
Sbjct: 1   MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR    +TP+ +++   + ++K+RGL +GADDY++KP +  EL AR+RA++RR  
Sbjct: 61  SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++  +  V      + LT KEY ++EL     +   ++   + HL+ 
Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D P    +   +  LR++L   AG   +IE V+G GY L
Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQ-AGADGWIENVYGMGYKL 220


>gi|331701040|ref|YP_004397999.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128383|gb|AEB72936.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 134/230 (58%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD+ LA S++L L  E     V+  G +G  L +   +D ++LDL L  + G+
Sbjct: 4   LHILIIEDDEDLAKSLQLFL-GEIAQTTVSHDGFEGQMLGQEGIYDLVVLDLMLPQVSGY 62

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++L+  R    +S PV IL+   +++DKV G + GADDY++KPF++EEL+ R++A+++RS
Sbjct: 63  DILKHWRTEDHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRS 122

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            GH    + +  G   VNL  + VEV G  + L GKE+ ++       +T +TK+   + 
Sbjct: 123 -GHLGDDNTLSVGPFKVNLSNRIVEVNGKELALNGKEFDLLVYFIQNPDTIITKDQIFDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+    E  + +++V++  LRKK+  ++  +  I+T+   GY+      D
Sbjct: 182 LWGFESETAISVVEVYMSNLRKKIKQSSSLQP-IKTLRNVGYMFETEESD 230


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E F   + + GE+ + +   ++ + ++LDL L  + G+ 
Sbjct: 6   RILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGYS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A+   P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREMR-AQSPVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 121 ----GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 AQ+      +   DL VNL   +V   GH I +  KE +++  L+   N   T+
Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+H++      + + +DV I +LR+K+ + A     + TVWG GY
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHASWA--LTTVWGIGY 230


>gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +IE ++K    +  N+     G  G+ L    ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     A + +  G+L + L  + V + G  + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGFSQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLRQG 224


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ALA  + + L+ E + V     G + I + +    DA++LD+ L D+ G 
Sbjct: 20  VRVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 80  TVLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   +S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 140 AAAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++++I  LR+K+   AG    I T  G GY+++  
Sbjct: 200 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 244


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGS 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A+S+ V GDL ++ + + V + G  I+LT KE+ ++ELL    N   ++E  L
Sbjct: 123 DHEEKEKAKSIQV-GDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 182 NIVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  K  E   FD IILD+ + ++ 
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALKLLEEKKFDLIILDVMMPNMD 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 66  GIEVCMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124

Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       +S++  GDL+VN D + V V+G  + LT KE+ +++LL+  K   L+  
Sbjct: 125 FKKYNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVA 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 185 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 126/230 (54%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LLI+DD  L   +   L+   F V V   G  G+       FDA++LD+ +  + G 
Sbjct: 3   LRLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  K S P+ +L+      D+V GL+ GADDYI+KPF+  EL+AR+RA++RR+ 
Sbjct: 63  EVVRRIR-QKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRAT 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    IV GD+++++  + V V G    LTG E+ ++  L+ R    + +E  L    
Sbjct: 122 PDAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEAG 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            G      + +DV I  LR+KLS+       I+TV G GYVL   AKD  
Sbjct: 182 RGDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVL---AKDRV 228


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D +ILDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q ++ T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V++ +LR+KL N      ++ T  G GY
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGY 222


>gi|21244692|ref|NP_644274.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|294626751|ref|ZP_06705346.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|21110381|gb|AAM38810.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|292598999|gb|EFF43141.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 221

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA++I   ++ +++ +           +   + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLANAICDGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R    +TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RA+ RRS+
Sbjct: 61  SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  GD+ ++  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL +A      I TV+G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDA-----LISTVYGQGYMV 216


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G D +E  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LRV + + PV +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRV-RSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A   +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   
Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 182 IDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 226


>gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
          Length = 243

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L +ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLAVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  L   +   L++E F V V   G DG+ + + + +DAI+LD+ +  + G+
Sbjct: 1   MRILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A+  TP+ +L+      D+V  L +GADD++SKPF+   LVAR+R++VRR  
Sbjct: 61  TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  A+ V      I LT +E+ ++E L       ++K   L++++D
Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +  I++V++  LR K+     G+  IET+ G GY L
Sbjct: 181 GDFEGDPNIVEVYVRHLRNKVDRPF-GRASIETLRGAGYRL 220


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L+  + + L+ E   V     G   +   + +  D ++LD+ L D+ G  
Sbjct: 28  RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS G
Sbjct: 88  VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS-G 146

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ     S++  GDL ++ D+  V   G  +HLT  E++++  L       L+K   L+
Sbjct: 147 AAQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILD 206

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+KL    G    I T  G GY+++
Sbjct: 207 RVWSYDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLIK 252


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 135/226 (59%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I+  L+   F+V  +D GE+ IEL K  + D I+LDL L  I G EV
Sbjct: 6   ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGIEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R       TP+ +L+ M    D++ GL+ GADDY++KPF+  ELVARI+A++RRS 
Sbjct: 66  CKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRRSE 125

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q++    +V  DL ++ +   V ++   I LT KE++++ +L+  +   L++ + L+
Sbjct: 126 -EKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E + +DV I  LRKK+ +   G+ YIET+ G GY ++
Sbjct: 185 EVWGYDYFGETRTVDVHIRHLRKKIGDDQSGE-YIETIRGVGYKMK 229


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 134/228 (58%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL+IED+  L   ++  L+    N YV D+  DGIE   L    E+  ++LD+ L  I
Sbjct: 1   MRILVIEDEPKLGDYLKKGLEE---NGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL+A+R  K + PV +L+    +ED+V+GLQ GADDY+ KPF+  EL+AR++A++R
Sbjct: 58  DGFTVLQAIRRTK-NVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    +++   DL +++ ++ V     R+ LT KE+ ++ +L  R+   L++      
Sbjct: 117 RGKAQDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   + +  +++V I +LR K+ +    K  + TV G GYVL + +
Sbjct: 177 VWDMNFDSDTNVVEVAIRRLRSKIDDPFEVK-LLHTVRGMGYVLEDRS 223


>gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM
           12804]
 gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii]
          Length = 235

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L++EDD   A  I   LK   ++  +T  G   ++      +DAIILD  L  D+ G 
Sbjct: 3   RCLIVEDDADNARYIANGLKELGYDPVITMDGPTALQRATTEHWDAIILDRMLPNDVDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L +LR     TPV +LS +++++++VRGL++G DDY++KPF   EL AR+ A++RR S
Sbjct: 63  SILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+ +  +   DLS++L +  V   G  I L  +EY+++  +       LT+ M L  ++
Sbjct: 123 SGYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P+  +IDV I +LR+K+ +  G    I TV G GY L   A
Sbjct: 183 GYHYDPQTNVIDVHISRLRQKI-DGPGEAPLIHTVRGVGYRLSAQA 227


>gi|94986314|ref|YP_605678.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556595|gb|ABF46509.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 220

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A      L+   + V     G  G+E     E+  I+LD+ L  + GF
Sbjct: 1   MRLLLVEDDPRIAEPTLEALREAGYAVTWRQTGPAGLEEALLGEYPLIVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR A ++  +  L+    +ED+V+GL  G D Y+ KPF   EL+A +RA+ RR R
Sbjct: 61  AVARELRAANVAGAILFLTARGELEDRVQGLDLGGDAYLVKPFAVPELLATLRALTRRER 120

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     +        LD  A+TV   G  + +TG+EY ++E+L L  +   T+E  L+ +
Sbjct: 121 GQGAPRVAFAGGRGRLDTVARTVTWDGEEVAVTGREYALLEVLVLSPDRWFTREELLDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E +I+DV++  LR+KL+  A     + +  GRGY
Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKLAPEA-----VSSERGRGY 216


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 16  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A   TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 76  AARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS-S 134

Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +A ++  T          DL+++L  + V   G  + LT  E+ ++E+        LT+E
Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+ 
Sbjct: 195 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQG 245


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 132/230 (57%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ ENF +   D GE  +E+    ++D I+LDL L  + G E
Sbjct: 6   RILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V G ++G DDY+ KPF+  E++ R++AI+RRS  
Sbjct: 66  VCQRVREFK-ATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A          S++V  +L+++ DA  V   G  + LT KEY+++  L+L  +   T+E
Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
             L  ++      +++ +D  I +LR+KL+  +    N I TVWG GY L
Sbjct: 185 ELLKDVWHYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKL 234


>gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++AL  +I   L++  ++V     G++ ++L     FD ++LDL L  I G 
Sbjct: 7   MRILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGM 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR     T V ILS    + DKV GL +GA+DY++KPF+ +EL ARIR++  R  
Sbjct: 67  TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS +  A+   V G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 127 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                      V I  LRKKL +A  G + I    G GYV+ ++
Sbjct: 187 SSVNSFSNATRVHISSLRKKLRSAL-GYDPIRNRIGEGYVMEDS 229


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G + +   + +  DA+ILD+ L D+ G 
Sbjct: 21  VRVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 81  TVLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S +V GDL ++ D+  V      IHLT  E++++  L       L+K   L+ 
Sbjct: 141 TAVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDR 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     +  +++++I  LRKK+   AG    I T  G GY+++  
Sbjct: 201 VWNYDFGGQANVVELYISYLRKKID--AGRSPMIHTRRGAGYLIKPG 245


>gi|87199616|ref|YP_496873.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135297|gb|ABD26039.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 228

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD   A  I   L  E F V     G +G+ +   + +  I+LD  L  + G  
Sbjct: 4   KILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRMLPGLDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR A + TPV ILS + + ED++ GL  GADDY++KPF   EL+ARIR +VRR  G
Sbjct: 64  VLAALRGAGVHTPVIILSALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGSG 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  GDL ++L ++ V      I L  +E++++E L    +  +T+ M L  ++
Sbjct: 124 APTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFRLLEFLLRHADQVVTRTMLLEGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +IDV I +LRKK+         + TV G GY
Sbjct: 184 DYHFDPGTNVIDVHISRLRKKIDEGE-VVALLHTVRGAGY 222


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E +   +   GE+ +++   ++ + I+LDL L  + G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELRSSS-QVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSLIVTG-----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             Q     G           DL VNL   +V   GH I +  KE +++  L+   N   T
Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L+H++      + + +DV I +LR+K+ +    K  + TVWG GY
Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHE--KWALTTVWGIGY 231


>gi|157372224|ref|YP_001480213.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323988|gb|ABV43085.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 220

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDDK +   I+  L    FN+ + TD  +G++ +E   +   DA+ILDL L  +
Sbjct: 1   MRILLIEDDKLIGDGIKAGLTRLGFNLDWFTDGLVGKNALESAPY---DAVILDLSLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR  R A    PV IL+   ++E +V GLQSGADDY+ KPF   E+ AR++A++R
Sbjct: 58  DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G     +V G++  +   ++V   G  + LT +E  ++EL    K   L + +    
Sbjct: 118 RRHGQLMPQLVHGNVVFDTATRSVSCNGEPVTLTPRELAVLELFLHNKGRVLARPLIQEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LY+  DE     ++V I  LR+KL N      +I T+ G GY L +NA
Sbjct: 178 LYNWDDEVSSNAVEVHIHHLRRKLGNG-----FIRTIHGVGYTLGDNA 220


>gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  L  ++   + ++  +V +VT L   G  +     +D I+LDL L D  G
Sbjct: 1   MRILLIEDDTVLGAAVRDQVAADGHSVDWVTRLDAAGDAMIG-TAYDLILLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L++LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR 
Sbjct: 60  IGFLKSLRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   ++  G L ++L A+++   G  + LT +E+ + E    R    L+K      LY
Sbjct: 120 SGNPNPIVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V + +LRKKL     G   IET  G GY L
Sbjct: 180 AFDAEVESNTIEVHVSRLRKKL-----GPQVIETERGLGYRL 216


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V ++G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++AL  +I   L++  ++V     G++ ++L     FD ++LDL L  I G 
Sbjct: 1   MRILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR     T V ILS    + DKV GL +GA+DY++KPF+ +EL ARIR++  R  
Sbjct: 61  TVLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRRF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS +  A+   V G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 AQDNIVLTCGKLSFDTKARIASVGGEALSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                      V I  LRKKL +A  G + I    G GYV+ ++
Sbjct: 181 SSVNSFSNATRVHISSLRKKLRSAL-GYDPIRNRIGEGYVMEDS 223


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V +T  G+ G EL +   +D +ILD  L +  G 
Sbjct: 1   MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    + PV  L+   +++D+V+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    +  GDL ++++ +    QG  I L+ KE Q+++ L       LT    + H
Sbjct: 121 VDSYTTTGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ G   PE  +I   I  LR+K+    G    I TV+G+GY
Sbjct: 181 LWKGEKPPESNVIAALIRLLRRKIE-LGGESTLIHTVYGKGY 221


>gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia
           xenovorans LB400]
 gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged
           helix family [Burkholderia xenovorans LB400]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+   F V  T  G           +  ++LDLGL  + G 
Sbjct: 5   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWTRDGHKAGLALDTTVYALVVLDLGLPRVSGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R +    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 65  ELLKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DL+VN  A+TV+V   R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 125 GRSVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++E E   I+V +  LRKKL     G   I+TV   GYV+
Sbjct: 185 WQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVV 220


>gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK L  ++ + L+   + V     G+D +     Y +D IILD  L  + G 
Sbjct: 1   MRILLVEDDKVLCSTVAMQLEQAGYQVDQCCRGDDALYYATEYPYDVIILDRMLPSLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L+A+R   I TPV I + +  + D++ GL +GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRPG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    + +  G+LS  LDA   E+     +   + L+G+E  ++E L      TL +   
Sbjct: 121 RTADTASLAVGNLS--LDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAI 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L++++    E E   +D +I  LR++L +  G    I+TV G GY L E
Sbjct: 179 LSYVWGPDSEVEAGNLDNYIYFLRRRLKSLHGNAK-IQTVHGVGYRLEE 226


>gi|256421617|ref|YP_003122270.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256036525|gb|ACU60069.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LA SI   L+ E +   V+    +  +    +++D ++LD+ L D  G 
Sbjct: 1   MKVLLVEDNMELAGSISNFLEKEGYLCEVSYTSSEAYDKLSGFQYDCVLLDITLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ + + KI + V I+S  +S++DK+ GL+ GADDY++KPF+  EL AR+RAI RR +
Sbjct: 61  ELLQFMHLEKIDSCVLIISAKNSLDDKISGLEGGADDYLTKPFHLPELHARLRAIFRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   ++++N D     V   R+ +T KE+ ++    + KN  L+++    HL+ 
Sbjct: 121 LQGSNIVSFNEITLNTDTLEASVNEIRLDVTPKEFDLLLYFLVNKNRVLSRQSIAAHLWG 180

Query: 181 GRDEPEVKIIDVF--ICKLRKKLSNAAGGKNYIETVWGRGY 219
              +       V+  +  LRKK+ +AA G +YI TV+G GY
Sbjct: 181 DYTDNLANFDFVYQHVKNLRKKI-HAAEGADYINTVYGLGY 220


>gi|226194918|ref|ZP_03790509.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225932723|gb|EEH28719.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 132/236 (55%), Gaps = 15/236 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G EV
Sbjct: 1   MLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGMEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR +  
Sbjct: 61  CRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQPG 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L 
Sbjct: 120 ASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDILK 179

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 180 QLRGIEFDGID----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 231


>gi|262342066|gb|ACY54553.1| putative transcriptional regulatory protein PhoP [Pseudomonas
           syringae pv. syringae]
          Length = 194

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 109/191 (57%), Gaps = 1/191 (0%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
            E+ +     +  D  ++DLGL  I G +++R LR    + P+ IL+   + +DKV GL 
Sbjct: 2   AEEALYQVAQFNHDLAVIDLGLPGIGGLDLIRQLRTLGKAFPILILTARGNWQDKVEGLA 61

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152
           +GADDY+ KPF  EEL AR+ A++RRS G  QS I  G L ++L+ K   +    + LT 
Sbjct: 62  AGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALTA 121

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
            EY+++E L L     + KE  +  LY   DE +  +I+V + +LR+KL ++   K  IE
Sbjct: 122 YEYRILEYLMLHHQQVVPKERLMEQLYPDDDERDPNVIEVLVGRLRRKLDSSVAFKP-IE 180

Query: 213 TVWGRGYVLRE 223
           TV G GY+  E
Sbjct: 181 TVRGMGYLFNE 191


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS  + +G LSVN   +D  A+   + G R+ LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGESE 238


>gi|160935974|ref|ZP_02083348.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441216|gb|EDP18933.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 130/224 (58%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K + + IE +L  + + V   + G DG++L +  + D ++LDLGL D+ G E+
Sbjct: 7   IIIIEDEKNICNFIETVLSPQGYQVTCANTGTDGLKLIESLKPDVVLLDLGLPDMDGLEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R    + P+ ++S  +    KV  L  GADDY++KPF   EL+ARIR  +R S+  
Sbjct: 67  IQEVRSTS-ALPIIVISARTLERSKVAALDLGADDYLTKPFGTAELLARIRTALRHSQRA 125

Query: 123 A--QSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A  QSL    GDL ++ + + V+V+G  +HLT  EY+++ LL+      +T E  ++ ++
Sbjct: 126 AGTQSLKYEVGDLLIDFERRLVKVKGQDVHLTQIEYKLVSLLAQNAGKVMTYESIISKIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + + +I+ V +  +R+KL        YI T  G GY +RE
Sbjct: 186 GPFADSDNQILRVNMAHIRRKLEENPAEPQYIFTEIGVGYRMRE 229


>gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA ++   L +E F V V   G DG+E     +FD ++LD+ L  + G+
Sbjct: 1   MRILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  ++ TPV +LS      D+      GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G+L+++   + V      + LT +EY ++E L   K   ++K   L  ++D
Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V+I  LR+K+ +A  G   IETV G GY L
Sbjct: 181 SNYDGDDNVVEVYIGYLRRKI-DAPFGMATIETVRGVGYRL 220


>gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 250

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 221


>gi|83312342|ref|YP_422606.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82947183|dbj|BAE52047.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA  I   LKS  F   V     D     +   + A ILDLGL D  G 
Sbjct: 1   MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++RA R      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RAI+RR  
Sbjct: 61  DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+L+ +   + V V G  + +  +E +M+E L  R    ++K      LY 
Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D+     ++V + +LRK+L     G   + T+ G GY+L + A 
Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVT-VHTLRGIGYMLADGAS 225


>gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      I+  L    F V +   G DG       E++ IILD+ L DI G+
Sbjct: 1   MKILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR +   TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILSSLRESNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL +++ ++     G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV I +LR K+ +    K  I+TV G GY +  N
Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFSLK-LIQTVRGMGYKMCSN 223


>gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   I   L+   + V     GE  +E      +D ++LDL L  + G 
Sbjct: 1   MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNLPKVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR+LR   + T V ILS  S I DKV GL +GA+DY+SKPF+  EL AR+R++ RR  
Sbjct: 61  QVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G LS N  ++   V    + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  +     I V I  LRKKL  AA G + I    G GY
Sbjct: 181 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 218


>gi|229141822|ref|ZP_04270350.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|228641658|gb|EEK97961.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 222

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   LK E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R   +  +  GD+ V+   +TV+     + L+ KE+++++LL   +   L ++  L  
Sbjct: 124 SLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ L   + + L+ E ++V     G D ++  + +  DA++LD+ + D+ G 
Sbjct: 18  LRVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAARDFAPDAMVLDIMMPDLDGM 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR +    PV  L+   ++ D+V GL +G DDY++KPF+ EE+VAR+R ++RR+ 
Sbjct: 78  AVLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRA- 136

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A     + ++  GDLS+N D+  V   GH I LT  E++++  L   +   ++K   L
Sbjct: 137 GTALTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQIL 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++        +++++I  LRKK+   AG    I TV G GY+++
Sbjct: 197 DRVWNYDFGGRSSVVELYISYLRKKID--AGHDPLIHTVRGVGYMIK 241


>gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 219

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ LA  I+  L  +   V     GE  +   K  +F  +ILDLGL DI G 
Sbjct: 1   MRILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV ILS    ++D+V+GL +GADDY+ KPF+  EL AR+RA+ RR  
Sbjct: 61  TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A   I   ++ +   +  V      + L+ +EY ++  L+  +   L+K+     +Y 
Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL+      + I+TV G GY++
Sbjct: 181 WSDDVSSNTMEVHIHNLRKKLN-----PDLIKTVRGMGYMI 216


>gi|261213126|ref|ZP_05927410.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|260838191|gb|EEX64868.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 218

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  GDL ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQPLKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I  V G GY++
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216


>gi|121585926|ref|ZP_01675719.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|153215679|ref|ZP_01950075.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801271|ref|ZP_01955857.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|121549862|gb|EAX59882.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|124114662|gb|EAY33482.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124123186|gb|EAY41929.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|327486060|gb|AEA80466.1| DNA-binding response regulator [Vibrio cholerae LMA3894-4]
          Length = 218

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  GDL ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N ++ V G GY++
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216


>gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 EDL933]
 gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli
           CFT073]
 gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046]
 gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. W3110]
 gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89]
 gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536]
 gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS]
 gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli
           SMS-3-5]
 gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11]
 gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ATCC 35469]
 gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88]
 gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a]
 gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39]
 gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli
           UMN026]
 gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp.
           4_1_40B]
 gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O157:H7 str. FRIK966]
 gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185]
 gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302]
 gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736]
 gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR
 gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli]
 gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073]
 gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli]
 gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K12 substr. W3110]
 gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator
           protein [Escherichia coli 536]
 gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS]
 gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5]
 gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11]
 gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia fergusonii ATCC 35469]
 gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli S88]
 gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI39]
 gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli ED1a]
 gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli UMN026]
 gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82]
 gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. TW14359]
 gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15]
 gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042]
 gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185]
 gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034]
 gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302]
 gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU
           83972]
 gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146]
 gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli DH1]
 gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431]
 gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR
           [Shigella boydii ATCC 9905]
 gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. EC1212]
 gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli WV_060327]
 gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. G5101]
 gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. 493-89]
 gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G]
 gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520]
 gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482]
 gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252]
 gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263]
 gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863]
 gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007]
 gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
 gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253]
 gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167]
 gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ECD227]
 gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1044]
 gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1125]
 gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli AA86]
 gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
 gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
 gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 265

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E+F   VT  G D I + +  + D +ILD+GL  I G E
Sbjct: 33  RALVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLPGIDGLE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 93  VCRQLRTFSDAY-VVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRI 151

Query: 122 HAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
              +   T          G L +++ A+ V +    I LT  E+ ++E LS R    L++
Sbjct: 152 QQSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSR 211

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  + DG       ++DV I  LR+KL + A    YI TV G GY
Sbjct: 212 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGY 259


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G+  ++  + +  DA++LD+ L D+ G 
Sbjct: 43  VRVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR+ 
Sbjct: 103 TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAG 162

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 163 AADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDR 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 223 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 265


>gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli
           E24377A]
 gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1]
 gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str.
           REL606]
 gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9]
 gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9]
 gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A]
 gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI1]
 gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)]
 gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli B str. REL606]
 gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BL21(DE3)]
 gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli W]
 gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli EC4100B]
 gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120]
 gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489]
 gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   +   L+ E ++V     GE+ +   +  E+D +ILD+ +  + G 
Sbjct: 1   MRILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV +L+   SI+D+V+GL +GADDY+ KPF  +EL+ARIR ++R+  
Sbjct: 61  EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +  +   V      IHL+ KE+ ++  +       L++E    H+++
Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E  +IDV+I  LRKK+      K  + T+ G GYVL+
Sbjct: 181 YDYSGESNVIDVYIRYLRKKIDEGHSHK-LLHTIRGVGYVLK 221


>gi|194293015|ref|YP_002008922.1| response regulator in two-component regulatory system [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226919|emb|CAQ72870.1| Putative response regulator in two-component regulatory system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 237

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 16/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDL 52
           MR+LL+EDD  +  S++L L+ E F V   D   DG                +D I+LDL
Sbjct: 1   MRVLLVEDDAMIGESVKLALRQEGFAV---DWVRDGDAGLAAATTAADGQACYDLILLDL 57

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           GL   PG EVLRALR   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+
Sbjct: 58  GLPRRPGLEVLRALRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARM 117

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A+ RR+ G A+ L+  GD+ +N   +    +G  + L+ +E+ ++  L  R     +  
Sbjct: 118 HALARRAAGRAEPLVTYGDIVLNPATREATCRGEPVRLSAREFALLSALMARPGKVWSVP 177

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                LY   DE     ++V+I  LRKK      G   I  + G GYV+
Sbjct: 178 QLQERLYGWDDEVGSNTVEVYIHALRKKF-----GAALIRNIRGVGYVV 221


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQHS-NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT+E  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +    K  I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231


>gi|299822982|ref|ZP_07054868.1| response regulator [Listeria grayi DSM 20601]
 gi|299816511|gb|EFI83749.1| response regulator [Listeria grayi DSM 20601]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  IEL L+ EN+   V + G  G+EL    ++DAI+LDL L  + G E
Sbjct: 3   RILIIEDEKNLSRFIELELQHENYETQVANDGRSGLELALNEDWDAILLDLMLPHLNGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE----LVARIRAIVR 117
           V R LR  K  TP+ +++   S+ D+V GL  GADDYI KPF  EE    L + +R +  
Sbjct: 63  VCRRLRQVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEH 121

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+ +   D+ V  + + V+     I LT +EY+++  L    N  LT+E+ LN 
Sbjct: 122 AEEAAKQTTLEYRDIVVEKENRIVKRGDEIIDLTKREYELLLTLMENINIVLTREVLLNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    E E  ++DV++  LR K+ + +  ++YI+TV G GYV+R
Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDHPS-EESYIQTVRGTGYVMR 225


>gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11]
 gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +       L +    V   + G + +      ++D ++ D  + D+ G 
Sbjct: 1   MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF   EL+ARI A+ RR R
Sbjct: 61  SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G     A  L   G L ++L ++T    G  + L  KE++++E+L   K    T+ M L 
Sbjct: 121 GEGDAPATKLSHRG-LELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   EP   +++  + +LR K+      + YI T+ G GY+ 
Sbjct: 180 RVWDINFEPSTSVVETHMSRLRNKIEKPFDAE-YIRTIRGSGYMF 223


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSRGH----AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R++      A S+ +T  DLS++   + V     RI LT  E+ ++E+L       LT+ 
Sbjct: 120 RTKPEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRS 179

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 180 RILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232


>gi|167032707|ref|YP_001667938.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166859195|gb|ABY97602.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   ++  DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGTRIDLTAKEFCLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E  +
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEERTE 226


>gi|120613269|ref|YP_972947.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|326319347|ref|YP_004237019.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120591733|gb|ABM35173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323376183|gb|ADX48452.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V     G D    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRGSGAAVDHVASGSDADTVLATTQEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  LDVLKRLRGRGSALPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGATSSTIRHGPLVYDQAGRMATIDGKLVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +E     I+V+I +LRKK+     G   I TV G GY L + A
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCLEKVA 223


>gi|88811133|ref|ZP_01126389.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
 gi|88791672|gb|EAR22783.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD  LA  +   LK   F V +T    D   L +   +D I+LDLGL D  G 
Sbjct: 1   MLILVVEDDYVLAEGLRRDLKRAGFAVDLTGSAVDAAHLGREALYDLIVLDLGLPDGAGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR  R A    PV IL+   +  ++V G ++GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  EMLRGWRAAGNPIPVLILTARDAWYERVDGFKAGADDYLGKPFHTEELLARVGALLRRAH 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      + +  L ++ + + V +   + + LT  E++++    L     L+K     H+
Sbjct: 121 RQQPSGPLQSAGLVLDEEEQKVILPDQQPVRLTATEFRLLRYFMLNPQRLLSKARLTEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           Y    +P+  +++V++ +LR+KL     G +YIET  G+GY  R+
Sbjct: 181 YAEDGDPDSNVLEVYVNRLRRKL-----GSDYIETRRGQGYRFRD 220


>gi|311277391|ref|YP_003939622.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308746586|gb|ADO46338.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 222

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 119/223 (53%), Gaps = 11/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   +E  LK  ++ V     G+D +       +D ++LDLGL    GF
Sbjct: 1   MRILLVEDDPMVGEVLESSLKDASYAVDWVKNGDDALAGFAAQPYDVVLLDLGLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    + PV IL+   ++ D+++GL  GADDYI KPF   EL+ARIRA+ RRS 
Sbjct: 61  TVLDGLRRKDAAVPVLILTARDALADRLKGLDGGADDYILKPFEMSELLARIRAVTRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    ++  G ++  LD  T EV     G R  L+ +EY ++  L LR    L++    +
Sbjct: 121 GSRTPVMNNGIMT--LDPATHEVCLLASGERFLLSNREYALLAALMLRPGGILSRRDLED 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y   +E E   I+  I  LRKKL     G+  I+ + G G+
Sbjct: 179 SIYGWGEEVESNAIEFLIHALRKKL-----GREAIKNIRGVGW 216


>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++     +   L+   + V V   GE+G++  +   FD I+LD+ L    G+
Sbjct: 1   MRILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR     TPV  L+   S+ D+VRGL+ GADDY+ KPF   E +AR+R ++RRS 
Sbjct: 61  HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL ++L         H I LT KE+Q++ LL+ R+   L++      ++D
Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   +DV + +LR+K+      K  I T  G GY+L +  +
Sbjct: 181 MNFSTDSNAVDVAMGRLRRKVDEPFENK-LIHTQRGLGYILEDRGQ 225


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G+ G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          +++I+ GDL +  ++  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR KL        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|89896308|ref|YP_519795.1| hypothetical protein DSY3562 [Desulfitobacterium hafniense Y51]
 gi|89335756|dbj|BAE85351.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K +A ++  +LK   + V +   G+ G++      +D IILD+ L +  G 
Sbjct: 1   MRILMIEDEKYMARAVAEVLKKNRYTVDLVHNGQFGLDCALSNIYDIIILDIMLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  +I TPV +L+    +EDKVRGL  GADDY++KPF+ +EL+AR+RA+ RR  
Sbjct: 61  SILKEVRRNRIETPVILLTARGQLEDKVRGLDLGADDYLAKPFHTDELLARLRALGRRPP 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DL +   A  ++  G  I LT KE Q++ELL   KN  ++K+  +  ++
Sbjct: 121 ALLNEGALSFADLQLLPHALMLKSNGQEIKLTLKEAQLLELLINHKNIIVSKDAIIEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ++  I  LRKKLS    G + I T+ G GY L
Sbjct: 181 GHDTDAADNHVEAHISLLRKKLSEIHSG-SMIRTIRGAGYTL 221


>gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L +    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 133/233 (57%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S +FN Y  +L  DG+E          DA++LD+ +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    A+S+ +T  DL+++   + V     RI LT  E+ ++E+L       LT+   
Sbjct: 118 RTKPEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 16  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A   TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 76  AARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS-S 134

Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +A ++  T          DL+++L  + V   G  + LT  E+ ++E+        LT+E
Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+ 
Sbjct: 195 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQG 245


>gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+  NF V V + G+ G++     +FD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++++   + + L+ E + +     G+  +   + +  DA++LD+ L D+ G 
Sbjct: 23  VRVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 83  AILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 143 AADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245


>gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
 gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Eubacterium eligens
           ATCC 27750]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD++L+ ++  +L+  N++V   + G+  ++  +   +DA+I+D+ +  + G 
Sbjct: 1   MRILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR    + PV +L+  + I+DKV GL +GA+DY++KPF+  EL+ARIR ++ RS 
Sbjct: 61  TALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIR-VLTRSE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G++S+N     +        LT KEYQM+ +    K   ++ E F+  ++D
Sbjct: 120 KQQDNVITLGNISLNTTTCELSSPSGSFLLTNKEYQMMLMFMNNKTQVISAEHFMEKIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + ++  +  +I  LR+KL  A      I T    GY L+ N
Sbjct: 180 SESDSDISTVWTYISYLRRKLE-ALKSDYSIATRRNMGYYLKNN 222


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   +   L    F V+  + GE+ +     +  D ++LD+ L D  GFEV
Sbjct: 14  LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGFEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TP+  L+   ++EDKVRGL  G DDY++KPF+ EE++ARIRA++RRS+G 
Sbjct: 74  ARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSKGD 133

Query: 123 AQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
           A          + LD +T EV   G+ + L+  E++++    +     L+K   L+H+  
Sbjct: 134 APPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHVWR 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           YD R +    I++ ++  LR+K+ N       I+T+ G GYVLR
Sbjct: 194 YDFRGDD--GIVESYVSYLRRKIDNTE--PRLIQTLRGIGYVLR 233


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K +   ++  L+   ++      GE+G++L +    D I+LD+ L  + GF 
Sbjct: 4   RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR   ++TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RRS  
Sbjct: 64  VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122

Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G   S +I+  +LS++L    VE  G  I LT +E+ +++ L   +    ++EM L  
Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +V+ +DV I +LR+K+ +      YI T  G GY   E ++
Sbjct: 183 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 231


>gi|229522675|ref|ZP_04412091.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229528012|ref|ZP_04417403.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229334374|gb|EEN99859.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229340660|gb|EEO05666.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
          Length = 247

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 30  MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 90  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  GDL ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 150 GSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N ++ V G GY++
Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 245


>gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+  A  +    +      +V DL  DG++   L +   +D +++D  L  +
Sbjct: 1   MRLLIIEDDREAASYLAKAFREAG---HVADLAADGLDGYALAREGSYDVLVVDRMLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R+LR   + TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 58  DGLSLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLAR 117

Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  G A   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L
Sbjct: 118 RRGGGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLL 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            H++D   +P+  +IDV + +LR K+      +  I TV G GY++R   +
Sbjct: 178 EHVWDYHFDPQTNVIDVHVSRLRAKVDKGF-DRPMIHTVRGAGYMVRAGGE 227


>gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 128/231 (55%), Gaps = 16/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+     G  G+ L    ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   ++ 
Sbjct: 58  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMH 117

Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R     QS+ VT DL V      L  + V + G  + L  KE+Q+++ L    N  +++ 
Sbjct: 118 R----GQSVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRT 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223


>gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
          Length = 227

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++  +   +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFAPK-LIHTARGMGYMM 221


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|294851972|ref|ZP_06792645.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|294820561|gb|EFG37560.1| two-component system protein [Brucella sp. NVSL 07-0026]
          Length = 210

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 8/205 (3%)

Query: 28  YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           YV D    GE+G  L     +DA++LD+GL  + G  V+   R +  + PV +L+     
Sbjct: 6   YVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGISVVERWRRSGRTMPVLMLTARDRW 65

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
            DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ GHA S  V G L ++       + 
Sbjct: 66  SDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEFVCGPLHLDTKTSKASID 125

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
           G  + LT  EY+++  +    +  +++   + HLYD   + +   I+VF+ +LRKK+   
Sbjct: 126 GVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDRDSNTIEVFVGRLRKKM--- 182

Query: 205 AGGKNYIETVWGRGYVLRENAKDET 229
             G + IETV G GY +R   + E 
Sbjct: 183 --GVDLIETVRGMGYRMRSGGEGEA 205


>gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 245

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG-- 59
           +ILL++DD  L   +   L+ + F V+       G+++ +  E +   L L    +PG  
Sbjct: 6   KILLVDDDPRLRTMLVRYLEGQGFIVHAA---ASGVQMDRQLEREYYDLLLLDVLMPGED 62

Query: 60  -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            F + + LRV +   P+ +L+    + D+V+GL  GADDY+SKPF  +ELVARIRA++RR
Sbjct: 63  GFSICQRLRVQEPHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVLRR 122

Query: 119 SRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+    S      I+ G   + LD++++     +I LT  E+ ++  L+      L+++ 
Sbjct: 123 SQDLRSSDPTPGAIIFGPFRLALDSRSLWRNDEKISLTDSEFSILHALASHPWQPLSRDR 182

Query: 174 FLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L   +   D  P  + IDVFI +LR+ + +  G  +YI+TVWGRGYVL  +  D T
Sbjct: 183 LLAMTHGNEDATPSSRGIDVFISRLRRLVEDDPGEPHYIQTVWGRGYVLVPDGGDAT 239


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ +A  + L L+ E + +     G + + L +   +DA+ILDL L  + G E
Sbjct: 3   QILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 63  ICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 122

Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G AQ+   I    L+++  A+TV + G  + LT +E++++   +       ++   L  
Sbjct: 123 MGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  + E     ++  I +LR K+   A     + TVWG+GY   E
Sbjct: 183 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAE 228


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+A+   + L L+ +   V     GEDG+EL + +  DA+ILDL L  +PG E
Sbjct: 3   RVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    P+ + +      D V GL++GADDY+ KP     L ARIRA++RR  G
Sbjct: 63  VCRRIR-AHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGG 121

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  T     GDL ++    TV  QG  + L   E +++  LS       +++  L 
Sbjct: 122 APDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     + +++D  + +LR K+   AG   Y+ TV G GY
Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGY 224


>gi|56459206|ref|YP_154487.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56178216|gb|AAV80938.1| Response regulator (CheY,wHTH domains) [Idiomarina loihiensis L2TR]
          Length = 220

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L  ++EL L    F V     G   I       +DA++LDLGL D+ G 
Sbjct: 1   MELLLVEDDAMLGQAVELGLSERQFLVQRVRTGAAAISELNRTHYDAVVLDLGLPDLDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR   ++ PV +L+      + V+ L +GADDY+ KPF+  EL AR+RA+VRR R
Sbjct: 61  RVLASLRKKGMTLPVLVLTARDQSSEIVKQLDNGADDYMIKPFDMNELAARLRALVRRQR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A   +  GD+ ++    +V V+G  ++L+ +E+++++ L        +++     ++ 
Sbjct: 121 GYASPELKVGDIVLDDANHSVVVEGLAVNLSRREFELLKALMSAPERVHSRDKLEQVVFQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E   ++V +  LRKKL    G K +I+T+ G GY L+ N
Sbjct: 181 NEAQVESNALEVHVHNLRKKL----GHKEWIQTIRGIGYRLQCN 220


>gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121]
 gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK +A  I   L+   + V   + G+ G+       +DAIILD  L  + G 
Sbjct: 1   MKVLVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + P+ +LS M+ +  +V GLQ+GADDY++KPF   EL AR+  + RR+ 
Sbjct: 61  NLLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNT 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  Q+ +   DLS+NL  +  +     I L  +EY+++E L   ++  +T+ M L  +
Sbjct: 121 HESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I +LR K+ +    +  I T+ GRGYV++
Sbjct: 181 WDYHFDPQTNVIDVHISRLRNKI-DKPFSQVLIHTIRGRGYVIK 223


>gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VRR  
Sbjct: 61  EVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218


>gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++  L++  F       G+   E      FD ++LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR A+++TPV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R  +R
Sbjct: 63  VLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++ +G LS++L  +    +G  + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   +ETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GARQVETVRGMGYRL 218


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A      L+   F V V + GE G+E     +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICREVRQKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S + T D      L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRFK 228


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL++EDD  LA  +  +L   N   Y+ DL EDG +   +    E+D +ILD+ L  +
Sbjct: 1   MRILVVEDDLQLAEMLAEVLSDHN---YIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G    +  R    +TPV +L+   ++ DKV GL +GADDY+ KPF   EL+AR+RA++R
Sbjct: 58  DGIGFCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS       +  G L +N     V      + LT KEY ++ELL       L++   +  
Sbjct: 118 RSGASVALNLSWGRLHLNPSTYEVTFDNRPLSLTPKEYALLELLVSNGRRVLSRTGIIER 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   D P  + +   I  LR KL  A    N+IETV G GY L++
Sbjct: 178 IWSLEDPPSEETVKSHIKGLRAKLREAGAPDNFIETVHGLGYRLQQ 223


>gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44]
 gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44]
          Length = 229

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 1   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+  + +ED+V+GLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 61  AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ     +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    
Sbjct: 120 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++D   + E  +++V + +LR KL +A      + TV G GYVL
Sbjct: 179 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVL 223


>gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 228

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 130/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R LR A  S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +    K  + T  G GY+L   A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEVK-LLHTCRGMGYML--EAQDE 227


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   LK E ++V     G++ ++     E+D +I+D+ + ++ G 
Sbjct: 1   MKILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR      PV  L+ + S +DKV GL SG DDY+ KPF  +EL+ARIR+++RRS 
Sbjct: 61  TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A++ +   DL+++     V   G  I LT KE+ +++ L   + T L++E  L H 
Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   E    ++DV+I  LRKK+      K  + TV G GYVL+
Sbjct: 181 WDFSYEGYSNMVDVYIKTLRKKIDRDFEPK-LLHTVRGTGYVLK 223


>gi|206976678|ref|ZP_03237583.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206745164|gb|EDZ56566.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 225

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   LK E   +       +G+ +    ++D IILD     + G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLKEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSMSGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRKIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRLDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  R E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++EDD  +A  +EL L+ E+++    + G   + L +  ++D ++LD+ +  + G E
Sbjct: 3   KIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           VLR  R+    TPV +L+  +S+ DKV GL  GA+DYI+KPFN EEL+ARIRA +R    
Sbjct: 63  VLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGAL 122

Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S+ H  +L    DL VN   + V   G  I LT +E+ ++  L   K   L +
Sbjct: 123 HTGKSENSKKHEYAL---ADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  LN ++      +  ++DV+I  LRKK+ +       I TV G GY ++E  
Sbjct: 180 EQLLNEVWGFEYAGDTNVVDVYIGYLRKKIDHGHETA-LIHTVRGVGYTMKETG 232


>gi|325277325|ref|ZP_08142950.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097515|gb|EGB95736.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLRQGLNEAGFATELASDGETGQFLALSGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A   TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGRDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   ++  DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGSRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHPNK-LIHTVRGMGYVLEE 223


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D +E    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR   ++ PV +L+   ++ D+V GL +GADDY+ KPF  +EL+ARIRA++RRS  
Sbjct: 72  AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +  GDL ++L  + V   G R+ LT  E+ ++E+        LT+E 
Sbjct: 132 AAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR
Sbjct: 192 ILKAVWGFEFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 239


>gi|168215939|ref|ZP_02641564.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
           8239]
 gi|182381840|gb|EDT79319.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
           8239]
          Length = 237

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+KA+ + +   L+  ++  +    G  G+ L      D IILDLGL D+ G E+
Sbjct: 5   ILVIEDEKAIRNFVTATLEINSYQCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           ++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ +EL+ARIR  +R+    
Sbjct: 65  IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R + Q +   V GDL ++  +  V +    IHLT  EY+++ LLS      LT    L  
Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLNEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227
           ++    E ++  + VF+  LRKKLS  A   NYI+T  G GY +LR   KD
Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAVDTNYIQTHIGVGYRLLRIQDKD 234


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS  + +G LSVN   +D  A+   + G R+ LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGEGE 238


>gi|83644483|ref|YP_432918.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632526|gb|ABC28493.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED + L  SI+  L+     V   + G     L +  +FD IILDL L ++ G 
Sbjct: 1   MHILVVEDSELLGESIQARLQKMGHGVDWVNNGRQANGLLQHQQFDLIILDLNLPELGGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  K +TPV IL+    ++D+++ L +GADDY++KPF+  EL AR R ++RR++
Sbjct: 61  QILSELRKRKDTTPVLILTAREQVDDRIKLLDAGADDYLTKPFDFGELEARCRVLMRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L   G+LS +  AK V V   ++ L  +E++++E+        ++KE   + L+ 
Sbjct: 121 GFSSNLSRHGNLSFDRSAKAVYVNDEKLDLKNREFRLLEVFLGNLGRVMSKEELADRLFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + P    I+++I +LRKKL++++     I T+ G GY+
Sbjct: 181 FDESPGPNAIELYIARLRKKLADSS---VQIRTLRGLGYL 217


>gi|325277746|ref|ZP_08143310.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097120|gb|EGB95402.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 233

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  + G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GADDY+SKP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQGLPILMLTARDDSHDQVLGLEMGADDYVSKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LIV G L ++L  +TV  +G  + L+  EY ++ +L+      L ++  L  L
Sbjct: 124 EPRLDHDLIVIGGLRIDLAERTVSWRGDEVELSSGEYNLLVVLARNAGEVLNRDRILQQL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   ++  +   +DA+ILDL L ++ G E
Sbjct: 3   QILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 63  ICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 122

Query: 121 -GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G AQ+   I    L+++  A+TV + G  + LT +E++++   +       ++   L  
Sbjct: 123 MGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++  + E     ++  I +LR K+   A     I TVWG+GY   E   D
Sbjct: 183 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELNHD 232


>gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
          Length = 243

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA +RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRAPLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240


>gi|242237847|ref|YP_002986028.1| DNA-binding transcriptional regulator BasR [Dickeya dadantii
           Ech703]
 gi|242129904|gb|ACS84206.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 222

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  I+LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQEGLLQAMRNEGYTCDCATTAKEADALINSAHYSLIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R  + S PV IL+   +++++V GL  GADDY+ KPF   EL+ARIRA++RR +
Sbjct: 61  TLLTRWRNNQHSQPVLILTARDTVDERVTGLNIGADDYMIKPFALSELLARIRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +++LI   +++++L+++ V +    + LT KE+ ++  L L+  + + +E+    +Y+
Sbjct: 121 GSSENLIQVDNITLDLNSQQVMLDSKPVILTPKEFAILSRLILKAGSQVHREVLHQDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219


>gi|110798945|ref|YP_695660.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC
           13124]
 gi|168209564|ref|ZP_02635189.1| DNA-binding response regulator KdpE [Clostridium perfringens B str.
           ATCC 3626]
 gi|168213944|ref|ZP_02639569.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE
           str. F4969]
 gi|182626561|ref|ZP_02954308.1| DNA-binding response regulator KdpE [Clostridium perfringens D str.
           JGS1721]
 gi|110673592|gb|ABG82579.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC
           13124]
 gi|170712322|gb|EDT24504.1| DNA-binding response regulator KdpE [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714541|gb|EDT26723.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE
           str. F4969]
 gi|177908095|gb|EDT70665.1| DNA-binding response regulator KdpE [Clostridium perfringens D str.
           JGS1721]
          Length = 237

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+KA+ + +   L+  ++  +    G  G+ L      D IILDLGL D+ G E+
Sbjct: 5   ILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           ++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ +EL+ARIR  +R+    
Sbjct: 65  IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R + Q +   V GDL ++  +  V +    IHLT  EY+++ LLS      LT    L  
Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLNEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227
           ++    E ++  + VF+  LRKKLS  A   NYI+T  G GY +LR   KD
Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAMDTNYIQTHIGVGYRLLRIQDKD 234


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++VY    GE+ ++  K  E D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A          S I  GDL+++ +A TV   G RI LT +E++++  L+      +T+E
Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 182 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLR 231


>gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
 gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
          Length = 219

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDD  L  ++   + ++  +V +VT  D  +D +   +   +D I+LDL L D 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGRSVDWVTRLDAADDAL---RATSYDLILLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L+ALR+    TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ R
Sbjct: 58  RGIGFLKALRLRGDVTPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   +I  G + V+L A +V   G  + LT +E+ + E    R    L+K      
Sbjct: 118 RYCGNPNPIISHGPIDVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY+   E E   I+V + +LRKKL     G   IET  G GY L
Sbjct: 178 LYEFGAEVESNTIEVHVSRLRKKL-----GAGIIETERGMGYRL 216


>gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score =  132 bits (332), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D        +F A+ILDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++  + TV V G  + ++ +E+ ++  L  R +   +K      LY 
Sbjct: 121 GRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEVESNAVEVHVHNLRTKI-----GKHAIETVRGLGYRMRAPA 220


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I+  DL +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 233

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+VY    G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFDVYTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR RG   +     I  G
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSTATFSSETITVG 140

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++
Sbjct: 141 PLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           DVFI  LR+KL  A G    + TV G G+VLR+ 
Sbjct: 201 DVFIGYLRRKL-EANGAPRLLHTVRGVGFVLRQQ 233


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   I   LK E ++V     GE+ +       +D I++D+ +  + G+
Sbjct: 1   MRVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K STPV  L+   +IED+V+GL  GADDYI KPF+ +EL+ARIR ++RR+ 
Sbjct: 61  EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   DL ++   + V+     I L+ KE+ ++E +   +   L++E    H+++
Sbjct: 121 GSVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDV+I  LR K+      K  I T+ G GYVL++
Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDFEPK-LIHTIRGVGYVLKD 222


>gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 219

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L++EDD  +   +   L+S    V       DG+E   F  E D ++LD+GL    G+
Sbjct: 4   KVLVVEDDPGIRMLVATTLQSAGLAVLEA---RDGVEAMDFIPEADLVVLDVGLPRQSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL A+R      PV +L+G S   ++VRGL+SGADDY++KPF+  EL AR++A++RRS 
Sbjct: 61  EVLEAIRQNFGQLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALLRRS- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LIV G L ++  ++   +    +HLT  E+ ++  L+       ++E  L   + 
Sbjct: 120 -GRLGLIVMGSLKLSPGSREAWLDNDTLHLTPLEFDLLMTLAQAPGRIFSREELLVRHWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E   +++D++I +LRKKL   +   + +ETVWG+GY LR +
Sbjct: 179 AEYEGTERVVDIYIGRLRKKLLTES---DRLETVWGQGYRLRSD 219


>gi|322373103|ref|ZP_08047639.1| DNA-binding response regulator CiaR [Streptococcus sp. C150]
 gi|321278145|gb|EFX55214.1| DNA-binding response regulator CiaR [Streptococcus sp. C150]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  TVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  GD+ VNL   +  V+   + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFDQNTLSFGDVRVNLSTNSTFVEDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  V +++V++ K+RKKL       N ++T+   GY+L+
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFAAN-LQTLRSVGYILK 221


>gi|270263020|ref|ZP_06191290.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042708|gb|EFA15802.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 220

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDDK +   I+  L    FN+ + TD G  G    +   +DA+ILDL L  + G
Sbjct: 1   MRILLIEDDKLIGDGIKAGLTKLGFNLDWFTD-GLVGKSALESAPYDAVILDLSLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R A    PV IL+   ++E +V GLQSGADDY+ KPF   E+ AR++A++RR 
Sbjct: 60  LDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +V G+L  +   ++V   G  + LT +E  ++EL    K   L + +    LY
Sbjct: 120 HGQLMPQLVHGNLVFDSATRSVNCNGEPVTLTPRELAVLELFLHNKGRVLARSLIQEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  DE     ++V I  LR+KL NA     +I T+ G GY L E
Sbjct: 180 NWDDEVSSNAVEVHIHHLRRKLGNA-----FIRTIHGVGYTLGE 218


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A +++  L++E F V +   GEDG+ L +  ++D ++LD+ L  + G+
Sbjct: 1   MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR  +   P+ +LS      D   GL  GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  NVCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDLS++   + V      + LT +E+ ++E L  R +  ++K   L H++D
Sbjct: 121 NRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +  +++V++  LR+K+ +    +  ++TV G GY L
Sbjct: 181 TFDT-DPNVVEVYVGYLRRKI-DVPFSRTALQTVRGAGYRL 219


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 12/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+ ++   I   L    ++V V   G+ G+++     F  IILD+ L  + G 
Sbjct: 1   MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V +ALR  +++TP+ +L+ + S E+ V GL SGADDY+ KPF + EL+ARIR+++RR+ 
Sbjct: 61  AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120

Query: 121 GHAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             A            +++   DL ++L+ K+    G  I LT  EY+++E +       L
Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   L +++        K++DV++  LRKK+ N       I+TV G GY+L+E
Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKV-NRKDQPALIQTVVGMGYMLKE 233


>gi|221369103|ref|YP_002520199.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
 gi|221162155|gb|ACM03126.1| Two component transcriptional regulator, winged helix family
           precursor [Rhodobacter sphaeroides KD131]
          Length = 219

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  +I   + +E     ++T + ED +       +D ++LDL L D  G
Sbjct: 1   MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALASVATTAYDLVLLDLNLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR  K + PV IL+    + +++ GL +GADDY+ KPF+  EL ARI A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+    +  G L +++  + +E  G  + L+ +E+ + E L  R  + ++K      LY
Sbjct: 120 AGNPSPRLALGPLEIDIADRRIEGPGGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V++ +LRKKL     G++ IET  G GY L
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216


>gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LK   F V     G DG+      E+D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALSDEYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +++ +  G L+++L A+     G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAQSETTLEVGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LR+K+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRRKI-DPPDAPPMIRTVRGAGYIL 224


>gi|16800482|ref|NP_470750.1| two-component response regulator [Listeria innocua Clip11262]
 gi|16803417|ref|NP_464902.1| two-component response regulator [Listeria monocytogenes EGD-e]
 gi|46907605|ref|YP_013994.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47094403|ref|ZP_00232093.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|47095961|ref|ZP_00233564.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|116872809|ref|YP_849590.1| two-component response regulator [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|217964476|ref|YP_002350154.1| two-component response regulator [Listeria monocytogenes HCC23]
 gi|224499953|ref|ZP_03668302.1| two-component response regulator [Listeria monocytogenes Finland
           1988]
 gi|226223978|ref|YP_002758085.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254824563|ref|ZP_05229564.1| two-component system response regulator [Listeria monocytogenes FSL
           J1-194]
 gi|254827638|ref|ZP_05232325.1| two-component system response regulator [Listeria monocytogenes FSL
           N3-165]
 gi|254829864|ref|ZP_05234519.1| two-component response regulator [Listeria monocytogenes 10403S]
 gi|254852575|ref|ZP_05241923.1| two-component system response regulator [Listeria monocytogenes FSL
           R2-503]
 gi|254898457|ref|ZP_05258381.1| two-component response regulator [Listeria monocytogenes J0161]
 gi|254912052|ref|ZP_05262064.1| two-component response regulator [Listeria monocytogenes J2818]
 gi|254932562|ref|ZP_05265921.1| two-component system response regulator [Listeria monocytogenes
           HPB2262]
 gi|254936379|ref|ZP_05268076.1| two-component system response regulator [Listeria monocytogenes
           F6900]
 gi|254993108|ref|ZP_05275298.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|255025837|ref|ZP_05297823.1| two-component response regulator [Listeria monocytogenes FSL
           J2-003]
 gi|255030066|ref|ZP_05302017.1| two-component response regulator [Listeria monocytogenes LO28]
 gi|255521764|ref|ZP_05389001.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|284801763|ref|YP_003413628.1| two-component response regulator [Listeria monocytogenes 08-5578]
 gi|284994905|ref|YP_003416673.1| two-component response regulator [Listeria monocytogenes 08-5923]
 gi|289434659|ref|YP_003464531.1| two-component DNA-binding response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|290893514|ref|ZP_06556497.1| two-component system response regulator [Listeria monocytogenes FSL
           J2-071]
 gi|300766397|ref|ZP_07076354.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|315282247|ref|ZP_07870699.1| response regulator ArlR [Listeria marthii FSL S4-120]
 gi|315303046|ref|ZP_07873754.1| response regulator ArlR [Listeria ivanovii FSL F6-596]
 gi|16410793|emb|CAC99455.1| two-component response regulator [Listeria monocytogenes EGD-e]
 gi|16413887|emb|CAC96645.1| two-component response regulator [Listeria innocua Clip11262]
 gi|46880873|gb|AAT04171.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47015707|gb|EAL06637.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47017224|gb|EAL08067.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116741687|emb|CAK20811.1| two-component response regulator [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|217333746|gb|ACK39540.1| two-component response regulator [Listeria monocytogenes HCC23]
 gi|225876440|emb|CAS05149.1| two-component response regulator [Listeria monocytogenes serotype
           4b str. CLIP 80459]
 gi|258600017|gb|EEW13342.1| two-component system response regulator [Listeria monocytogenes FSL
           N3-165]
 gi|258605888|gb|EEW18496.1| two-component system response regulator [Listeria monocytogenes FSL
           R2-503]
 gi|258608970|gb|EEW21578.1| two-component system response regulator [Listeria monocytogenes
           F6900]
 gi|284057325|gb|ADB68266.1| two-component response regulator [Listeria monocytogenes 08-5578]
 gi|284060372|gb|ADB71311.1| two-component response regulator [Listeria monocytogenes 08-5923]
 gi|289170903|emb|CBH27445.1| two-component DNA-binding response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|290556859|gb|EFD90390.1| two-component system response regulator [Listeria monocytogenes FSL
           J2-071]
 gi|293584121|gb|EFF96153.1| two-component system response regulator [Listeria monocytogenes
           HPB2262]
 gi|293590019|gb|EFF98353.1| two-component response regulator [Listeria monocytogenes J2818]
 gi|293593802|gb|EFG01563.1| two-component system response regulator [Listeria monocytogenes FSL
           J1-194]
 gi|300512901|gb|EFK39991.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|307570959|emb|CAR84138.1| two component response regulator [Listeria monocytogenes L99]
 gi|313608901|gb|EFR84665.1| response regulator ArlR [Listeria monocytogenes FSL F2-208]
 gi|313614107|gb|EFR87799.1| response regulator ArlR [Listeria marthii FSL S4-120]
 gi|313619043|gb|EFR90859.1| response regulator ArlR [Listeria innocua FSL S4-378]
 gi|313623855|gb|EFR93974.1| response regulator ArlR [Listeria innocua FSL J1-023]
 gi|313628581|gb|EFR97006.1| response regulator ArlR [Listeria ivanovii FSL F6-596]
 gi|313633342|gb|EFS00188.1| response regulator ArlR [Listeria seeligeri FSL N1-067]
 gi|328467515|gb|EGF38584.1| two-component DNA-binding response regulator [Listeria
           monocytogenes 1816]
 gi|328475027|gb|EGF45817.1| two-component DNA-binding response regulator [Listeria
           monocytogenes 220]
 gi|332311819|gb|EGJ24914.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 135/225 (60%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  IEL L+ EN+   V + G  G+EL    E+DAI+LDL L  + G E
Sbjct: 3   RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+R+++RR   
Sbjct: 63  VCRRVRQVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVEN 121

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             QS   T     +L V  + + V+     I LT +EY+++  L    N  LT+E+ LN 
Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    E E  ++DV++  LR K+ +    ++YI+TV G GYV+R
Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 225


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   I + L+ ENFNV     G D +EL K    D I+LD+ +  I GFE
Sbjct: 5   KVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGIDGFE 63

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R   A    P+ +L+      DKVRGL+ GADDYI+KPF   EL+ARI A++RRS
Sbjct: 64  VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +++  GD+ ++ D   V+ +G  I LT +E+++++ L+  K   +++E+ 
Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++   +  + + +DV I KLRKKL +      YIETV G GY+++
Sbjct: 184 LSEVWGCGNLGDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMIK 231


>gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|170746673|ref|YP_001752933.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653195|gb|ACB22250.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +A  I   L    F V     G  G+       FD I+LD  L +I G  +
Sbjct: 4   VLVVEDDRRVAAEIGSALAEYGFQVDEAPSGSIGLRKALDGNFDVIVLDRMLPEIDGLSL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           L  LR AK+STPV ILS +S++ ++V GL++G DDY++KPF   EL AR+ A+ RR    
Sbjct: 64  LTELRAAKVSTPVLILSALSAVNERVDGLRAGGDDYLAKPFEFIELTARVDALARRKMAA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A + +V GDL ++L  + +   G  I L  KE+ +IE L     T ++++M    ++  
Sbjct: 124 EAVNELVVGDLRLDLIERVLYCAGREIELLPKEFAIIEFLMQNAGTLVSRKMIFESVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  +IDV I K+RKKL +  G    I TV   G++LR
Sbjct: 184 SFNHQSSVIDVHIGKIRKKL-DPDGLNPRIHTVRNTGFILR 223


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G++      FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2]
 gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2]
          Length = 235

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 7   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+  + +ED+V+GLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 67  AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 125

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ     +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    
Sbjct: 126 -QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++D   + E  +++V + +LR KL +A      + TV G GYVL
Sbjct: 185 SQVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVL 229


>gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T92]
 gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM
           1503]
 gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T17]
 gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T46]
 gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           K85]
 gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           210]
 gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           4207]
 gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           R506]
 gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           V2475]
 gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis]
 gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis W-148]
 gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 257

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 150

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H    A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+
Sbjct: 151 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++        I+D++I  LRKK+ +    +  I TV G GY+LR
Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 254


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L  + FN    + G++ + L +  + + I+LD+ L DI GFE
Sbjct: 4   KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +        + +++      DK+RGL+ GADDYI KPFN  EL+ARI+A++RR+  
Sbjct: 64  ICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNK 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S  +V G L ++ + + V   G  + LT +E+ ++++     N  LT++  LN ++ 
Sbjct: 124 PDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR+K+ +      YIETVWG+GY+ R+
Sbjct: 184 EDYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLFRK 226


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G EV
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  ELVAR++A +RRS  +
Sbjct: 76  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTKY 134

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 135 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238


>gi|229199233|ref|ZP_04325911.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584250|gb|EEK42390.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 222

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K+ TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRKIRLVKM-TPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|167625511|ref|YP_001675805.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167355533|gb|ABZ78146.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 224

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +   LK   +    TD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNTLLVEELIKQLKQAGYVTDTTDKVSEADYLIKETNYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   I TPV +L+  S   +KV G  SGADDY+ KPF+ +EL+ RI+A+++R+ 
Sbjct: 61  ELLETWREQGIHTPVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A +    +    ++++   ++V V      LT  E++++++  +     L+K    + 
Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LY   DE E  +++V++  LRKKL     GK  IET  G+GY+  
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKL-----GKTAIETRRGQGYIFH 220


>gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 130/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR    S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +    K  + T  G GY+L  +A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDFEAK-LLHTCRGMGYML--DAQDE 227


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|152994266|ref|YP_001339101.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835190|gb|ABR69166.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 221

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           MR+LLIED   L  ++   +  +   V       D ++   F E       +D ++LDL 
Sbjct: 1   MRVLLIEDTTGLGEAVRDQICDDGHAV-------DWVQSLNFAEASVQATSYDLVLLDLM 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  GF+ L++LR +  STPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ 
Sbjct: 54  LPDGNGFDFLKSLRKSGNSTPVIILTARDQVSDRIEGLNAGADDYLIKPFDLSELSARVG 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+ RR RG    L+  G L ++L    ++  G  + LT +E+ + E L  R  T L++  
Sbjct: 114 AVARRYRGDPNPLVKLGHLEIDLGEHRIKANGLPVELTAREWALFEGLVQRPGTLLSRSQ 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + LY    E E   I+V+I +LRKKL     G++ I TV   GY L
Sbjct: 174 LEDRLYQFGAEIESNTIEVYISRLRKKL-----GRDVIITVRNMGYRL 216


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  L  +++  L  E+++V +   GE  +E+ +  + D I+LD+ L  + GFE
Sbjct: 4   KVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  ++++P+ +L+  +   DK+ GL+ GADDY++KPF+  EL+AR+RA++RR   
Sbjct: 64  VCRILR-KEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++     +I  GD+ V++D     +    + L  KE+ ++  L+  K    ++E  L 
Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +DV I  LR+K+ N  G   Y+ TV G GY L
Sbjct: 183 KVWGYDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKL 227


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++  L++E + V +   G +G+ L +  E   +ILD+ L  + G +
Sbjct: 5   QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + ++LR      PV +L+ +SSIEDKV GL+ GADDY++KPF  EEL+ARI A++RR   
Sbjct: 65  LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  A +L V  DL ++L+       G  I LT KE   +ELL        ++E  L+++
Sbjct: 125 QRPRATTLQVA-DLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   ++DV++ +LR K+ +       ++TV G GY L
Sbjct: 184 WGMHEDPLTNVVDVYVRRLRSKI-DEGHPLALLKTVRGLGYRL 225


>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
 gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
          Length = 230

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F + +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL ++L   TV+ +  ++ LT KE+++++L    +N   TK    N 
Sbjct: 124 SATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYNL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKL 227


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDK + +S+ L+L  E + V V   G + +   K +  D ++LD+ L +  G+E
Sbjct: 3   KILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V + +R  KIS  P+ +L+      DKV GL+ GADDYI+KPF  +EL+ARI A++RR +
Sbjct: 63  VCKEIR--KISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   IV     ++L  +TV+V+G  ++L+ +E+++++LL        T++M + H+
Sbjct: 121 SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + +DV+I  LR+K+ +      YI TV   GY  +E
Sbjct: 181 WGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 129/222 (58%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK L + ++L L+ E F+V +   G+ G E  + Y ++ +ILD+ L ++ G+E
Sbjct: 5   QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   +R  +     P+ +L+     +DK+ GL+ GADDY+ KPF+  ELVAR+RA++RR 
Sbjct: 65  VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       ++  GDL+V+  +  V V+ + + L  KE++++ LL        T+E  L  
Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +D  + ++RKKL   +G  + I+TVWG GY
Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGY 226


>gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
 gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
           JGS1987]
          Length = 237

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 128/231 (55%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+KA+ + +   L+  ++  +    G  G+ L      D IILDLGL D+ G E+
Sbjct: 5   ILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMDGIEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           ++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ +EL+ARIR  +R+    
Sbjct: 65  IKKVREWS-NCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRKMNYD 123

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R + Q +   V GDL ++  +  V +    IHLT  EY+++ LLS      LT    L  
Sbjct: 124 RNNTQEIQEFVNGDLKIDYTSGCVFLDEEEIHLTPIEYKLLCLLSKNVGRVLTHNYILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227
           ++    E ++  + VF+  LRKKLS  A   NYI+T  G GY +LR   KD
Sbjct: 184 IWSSTCESDIPSLRVFMATLRKKLSKKAMDTNYIQTHIGVGYRLLRIQDKD 234


>gi|313835331|gb|EFS73045.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA2]
 gi|314928282|gb|EFS92113.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL044PA1]
 gi|314969982|gb|EFT14080.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA3]
 gi|328905911|gb|EGG25687.1| two-component response regulator, KdpE [Propionibacterium sp. P08]
          Length = 227

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD  +  ++ + L +  + + +   GE  +E+   ++ D ++LDLG+  + G 
Sbjct: 1   MRILIADDDPQILRALRITLGARGYEILLARDGEHALEMAVDHKPDVLLLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R      P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  QVIEAVR-GWSQAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIS 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  A+ +I  G + V+L + TV   G  + LT  E++++ELL   +   +T++  LN 
Sbjct: 120 HDRSGAEPVIAFGTVRVDLTSHTVTRDGANVRLTPTEWRVLELLIHNEGRLVTRQTLLNQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   + ++I +LRKKL        Y+ T  G GY L
Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSNPRYLITDAGMGYRL 223


>gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D+K++ + I++ LK E + + V+  G +GIE  K  + D +ILD+ L DI G 
Sbjct: 1   MKILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEKPDLVILDIMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EV++  +      PV +++  S I DK+ GLQ GADDYI+KPFN  EL+ RI+AI +   
Sbjct: 61  EVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKRIT 120

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R   H  + I  G + V  + + V V G  +++T KE+  + L+    N   T++  
Sbjct: 121 KKDREEVHKNNEINLGAIKVLKNERKVLVDGKEVNMTYKEFNTLLLMIENHNKVFTRDEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++    E   + +D+ I +LRKKLS  +     ++T++G GY L
Sbjct: 181 LEKVWGYEYEGNSRAVDILIQRLRKKLSPYSQS---VKTIYGVGYKL 224


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ + +   +    ++LDL L  + G++
Sbjct: 6   RILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A    P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREMRSAS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     H    +   DL VNL   +V   GH I +  KE +++  L+   N   T+
Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+H++      + + +DV I +LR+K+ + AG    + TVWG GY
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHAGWA--LTTVWGIGY 230


>gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 266

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 7   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 67  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 127 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +E     I+V++ +LRKK+  +      I TV G GY L + A   + 
Sbjct: 187 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEKAAAPASA 233


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ +++   ++ + ++LDL L  I G++
Sbjct: 6   RILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELR-ASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +   DL VNL   +V   GH + +  KE +++  L+   N   T+
Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+H++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHNSWA--ITTVWGIGY 230


>gi|325916695|ref|ZP_08178954.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325537095|gb|EGD08832.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 233

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A TV + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFVFDNAAHTVTLDGTPIELPNREYRLLEILIGRLGHVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I++++ +LR+KL++A      I TV G GY L E
Sbjct: 181 FDDDAGPNAIELYVGRLRRKLASA---PLRIVTVRGAGYKLEE 220


>gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 282

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 41  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 258


>gi|332298252|ref|YP_004440174.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332181355|gb|AEE17043.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 244

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/246 (36%), Positives = 129/246 (52%), Gaps = 28/246 (11%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L+ ++  +L    ++V     G+  +       +DA+ILD+ +  + G 
Sbjct: 1   MRLLLAEDEKRLSCALCEILSKHTYDVDAVYDGKSALAYIASGVYDAVILDIMMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR AK + PV +L+    I DKV GL  GADDY++KPF+ +EL+ARIRA+ RR  
Sbjct: 61  SVLRELRAAKNNVPVLLLTAKDEIADKVSGLDHGADDYMTKPFSTDELLARIRALTRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-------------------------QGHRIHLTGKEY 155
                 +  GDL+  LD KT E+                          G +I L+ KEY
Sbjct: 121 EVITGCLEYGDLA--LDPKTCELCTDARRSGIDARRSGIDARDDCQIPSGGKIKLSLKEY 178

Query: 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
           +++E+L    N  LTKE  L  ++ G  + E   ++VFI  LRKK+    G K  I+T  
Sbjct: 179 RIMEMLVQNPNQILTKERILEKVWGGDSDAEYNNLEVFISFLRKKM-RFIGSKAEIKTSR 237

Query: 216 GRGYVL 221
           G GY L
Sbjct: 238 GIGYSL 243


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQHS-NVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT++  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +    K  I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231


>gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
 gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
          Length = 254

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 147

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H    A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+
Sbjct: 148 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 207

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++        I+D++I  LRKK+ +    +  I TV G GY+LR
Sbjct: 208 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 251


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V V + G+ G++   F +FD +ILDL L  + GFE
Sbjct: 3   KILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRKVRAEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G   + T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228


>gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 222

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG    +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGFSTVRAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV G GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYML 216


>gi|257092042|ref|YP_003165683.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044566|gb|ACV33754.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ +A  +   L+   + +     G D         +D +ILDLGL  +PG 
Sbjct: 1   MRILLAEDDRIIADGLCRSLRQAGYAIDCAYNGLDADTALMTNTYDLVILDLGLPKLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    STP+ IL+ +   +D+V+GL  GADDY++KPF   EL AR+RA+ RRS 
Sbjct: 61  DVLRRLRARNSSTPILILTALDGTDDRVKGLDLGADDYMAKPFELAELEARVRALSRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++ +I  G L+ +   +   V G  + L+ +E  ++E+L LR    ++K+  ++HL  
Sbjct: 121 GTSR-MIQCGSLTFDQTDRCALVNGEMLDLSARELGLLEILLLRAKRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +E     I+V++ +LRKKL   A G N I TV G GY L + A++
Sbjct: 180 WGEEVSHNAIEVYVHRLRKKLE--ATGVNII-TVRGLGYYLEKPAEE 223


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     G++ ++  +  ++D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR R 
Sbjct: 64  VCRAVREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRS 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I +GD+S++ D +++ + G  I+LT KE+ M+ LL        +++  L+
Sbjct: 123 REAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLH 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G D P + + +DV I +LR+K+  +     Y+ T WG GY  +
Sbjct: 183 TIW-GSDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYFQ 228


>gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 257

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 11  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 228


>gi|158319827|ref|YP_001512334.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140026|gb|ABW18338.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++L+IED+  L ++++     + + V Y  D GE G+EL    E+D IILDL L  + G
Sbjct: 1   MKLLIIEDETDLVNALKKGFVKKGYAVDYAVD-GEVGLELYHINEYDLIILDLNLPSMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL  +R       V ILS  S++ D++RGL  GA+DY+ KPF+  EL AR+R+++R  
Sbjct: 60  LEVLETIREKDKMQRVLILSARSTVPDRIRGLDMGANDYLPKPFDFAELDARVRSLLRCE 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I   ++ ++  AK++ V G    L  +EY + E L + + T ++ E  + H++
Sbjct: 120 LIQHNTSIQYDNIILDTRAKSILVNGVIFPLAPREYAIFEYLLIHRGTVISAETLIEHIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D        +I V I  +RKKL  A+ GK YI TV G+GY++
Sbjct: 180 DSEVNMFTDVIKVHISNIRKKLREAS-GKEYIVTVRGKGYLI 220


>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 21  VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 81  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++  L+      L+++  L  ++ 
Sbjct: 141 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  + DVF+  LR+KL    G    I TV G GYVLR
Sbjct: 201 YDFDVDTNVADVFVSYLRRKLER-EGLPRVIHTVRGIGYVLR 241


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD A+   ++  L  E F V     GE+ + + +    D +ILD+ +  + G E
Sbjct: 73  RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR A    PV  L+   +  D+V+GL++GADDY+ KPF  E LVAR+RA++RR + 
Sbjct: 133 VLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQA 192

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL ++    T       IHLT  E++++    L     L K+  L  ++  
Sbjct: 193 ERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWGY 252

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  +++V++ +LR+KL  A G    I TV G GYVLRE 
Sbjct: 253 DFGGNANVLEVYVKQLRQKL-EAEGEPRLIHTVRGVGYVLREG 294


>gi|262403145|ref|ZP_06079705.1| DNA-binding response regulator [Vibrio sp. RC586]
 gi|262350644|gb|EEY99777.1| DNA-binding response regulator [Vibrio sp. RC586]
          Length = 218

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S++  L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQEALSRQGYTVDWLERGGGVVSALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  S PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYSLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++LI  G+L+++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEALISAGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I  V G GY++
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIRNVRGVGYMI 216


>gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/227 (37%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED K +   +  +L  E F V+    G DG +  K  ++D I+LD+ L    G E
Sbjct: 3   KILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYKSGDE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L+ +R  K S  PV ++S   +I  K+  L+ GADDY++KPF+  E+VAR+ A +RRSR
Sbjct: 63  ILKEVR--KFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSR 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             AQS  ++   D++V++D+K + V G  + LT KEY ++ELL   ++   TK    E  
Sbjct: 121 IKAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               Y G D      +   +  LR KL  A   + YIETVWG GY L
Sbjct: 181 WQEAYLGDDNA----VKTHMSNLRSKLKTANAQQEYIETVWGLGYRL 223


>gi|83719681|ref|YP_441198.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653506|gb|ABC37569.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 291

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 45  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 262


>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
 gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
          Length = 218

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+  ILDLGL  + G 
Sbjct: 1   MRILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ L+ A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +    + ++  ++ VE QG  I+L  KE+ ++  L ++    LT++     LY 
Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ++V +  LRKK          I TV G GY++
Sbjct: 181 WDEEVESNALEVHVHHLRKKFF-----PELIRTVRGVGYLV 216


>gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 2/231 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D+  +   + + L++  +     + GEDG+      + D +ILDLGL D+ G +
Sbjct: 6   RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGLPDMRGAD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLRA+R    S PV ILS     E+K+R L +GADDYI+KPF   EL+ARIR  +R S +
Sbjct: 66  VLRAIREWS-SVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G L ++L  + V V G  + LT  EY++++ L+      +T    L  ++ 
Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              E ++  + V+I +LR+K+        +I T  G GY LR   ++ + E
Sbjct: 185 SGYEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRLRLPHEETSVE 235


>gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 242

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218


>gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 222

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  IE  L+S+ F   V         +     FD +ILDLGL    G +
Sbjct: 3   RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV IL+    I+DKV G ++GADDY++KPF  EEL+ R++A +R+S G
Sbjct: 63  VLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I +G + ++L ++ V++    I L  +E+ + E         L++E  L+ +
Sbjct: 123 SQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LRKKL N     + IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGN-----DLIETVRGMGYRLR 221


>gi|78049624|ref|YP_365799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927313|ref|ZP_08188567.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
 gi|78038054|emb|CAJ25799.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542314|gb|EGD13802.1| two component transcriptional regulator, winged helix family
           [Xanthomonas perforans 91-118]
          Length = 221

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA +I   ++ +++ +           +   + + A++LD+GL    G 
Sbjct: 1   MHLLLVEDDTMLASAICEGVRQQSWTIDHVGHANAAKTVLVDHRYSAVLLDIGLPGESGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R    +TPV  L+    + D++RGL +GADDY+ KPF  +EL+AR+RA+ RRS+
Sbjct: 61  SVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAVTRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  GD+ ++  ++ V   G  + L+  EY+++  L  R    +TK+     +Y 
Sbjct: 121 GRVVPLLSHGDVCMDPGSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKDQLEEGVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E    +I V++ +LR+KL +A      I TV+G+GY++
Sbjct: 181 GPSEGGSNMIAVYVHQLRRKLGDA-----LISTVYGQGYMV 216


>gi|237808666|ref|YP_002893106.1| DNA-binding transcriptional regulator BasR [Tolumonas auensis DSM
           9187]
 gi|237500927|gb|ACQ93520.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 220

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 10/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+ILLIEDD  L + ++  L+ +    Y  D+     E  ++   ++D IILDLGL D  
Sbjct: 1   MKILLIEDDALLLNGLQKALEQQQ---YCCDIARSLSEARRYTLDDYDLIILDLGLPDGD 57

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L+  R    S PV IL+   S++D+V+GL  GADDY+ KPF   EL AR+RA++RR
Sbjct: 58  GLTLLKQWRQQGCSQPVLILTARDSLDDRVKGLDQGADDYLIKPFALAELQARVRALMRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A++ + +G L ++++   V +    + LT  EY ++  L L    T+ +E     L
Sbjct: 118 RFEKAENALQSGALKLDMNLNQVWLHEQELTLTRMEYAILRRLMLHAGKTVQRERLQQDL 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           YD  DE     ++V+I  LR+KL     G + I T+ G GY L
Sbjct: 178 YDWNDEIGSNTLEVYIHHLRRKL-----GSDSIRTIRGEGYRL 215


>gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 236

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 221


>gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++++ LK+  + V+V   G   +++   +  D +ILDLGL D+ G E
Sbjct: 3   RVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      P+ +LSG +   DKV  L +GADDY++KPF  +EL+AR+RA +RRS G
Sbjct: 63  VIRGLR-GWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRRSSG 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  +VT G+  V+L AK V +  G  + LT  E+ ++E+L       +++   L  ++
Sbjct: 122 GTEQPVVTVGEAKVDLAAKRVTLGNGEDVRLTPTEWHLLEVLVRHPGKLMSQRQLLLEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E     +  ++ +LR+KL        ++ T  G GY
Sbjct: 182 GPGYETAGGNLRFYMAQLRRKLEPDPARPQHLRTEPGMGY 221


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEF--DAIILDLGLTDIP 58
           RIL+++DD ALA  I ++L++E F   +  D G+    L  F+E   D ++LDL L  + 
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQ---ALAAFHEAKPDLVLLDLMLPGLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R A+   P+ +L+  S   D V+GL+SGADDYI KPFN +ELVARIR  +R 
Sbjct: 61  GIQVCDLIR-AESGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +  L+  GDL V+++   V     RI+LT  E+ ++  L+ R     T+EM L  +
Sbjct: 120 AAAASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  + + + ++++V + +LR K+ +       + TV G GY
Sbjct: 180 WGYQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGY 220


>gi|170738424|ref|YP_001767079.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192698|gb|ACA14645.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 225

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED + L  +I   L++    V     G DG    +   +D +ILD+ L  + GF
Sbjct: 1   MRILLVEDTRDLGEAIATRLRALGHAVDWERDGADGDAALQVQAYDLVILDVNLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +  +PV +L+  S ++D+V  L  GADDY+ KPF+  EL AR+RA++RR  
Sbjct: 61  SVLRRLRARRGRSPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G+L ++  A++  V G  + LT +E+ ++E+L+ R      K   L  +  
Sbjct: 121 GHADNAIAVGNLVLDRAARSARVAGQPLDLTRREWTLMEILAARPGRIFGKAELLERVTS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++     ++  + +LR+KL+  AG +  I T+ G GY
Sbjct: 181 FEEDASENAVEQIVARLRRKLAQ-AGAEPEIRTLRGLGY 218


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  132 bits (332), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  +LD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + L+   DLS+N   + V      I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR KL      K  I TV G GY LRE
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-HNEKRLIHTVRGVGYALRE 224


>gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 220

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V     G D   + +   +D ++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLAAQLAEALRLAGYTVDAAADGADAHYMGEVETYDVVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+  S+  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  TVLKQWRAAGRGMPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++       V G  ++LT  E++++ +L       +++   + H+Y 
Sbjct: 121 NHASAQWRCGPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDVFI +LRKKL       + IETV G GY L
Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLP-----ADTIETVRGLGYRL 216


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+E+
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDGYEI 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|182680347|ref|YP_001834493.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636230|gb|ACB97004.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 277

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +A  I   L    ++V + + G  G+   +      +I+D  L +  G  +
Sbjct: 57  ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPETDGLTL 116

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR   I TPV ++S + S+++K+RGL++G DDY++KPF   EL AR+ A++RR    
Sbjct: 117 IETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPAAE 176

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+S I+  G L ++L  +TV      + L  +E++++E L  R   T+T+ M L  +++ 
Sbjct: 177 ARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVWNY 236

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              P+  ++DV I KLRKK+ +  G    IE+V G G+ L
Sbjct: 237 NFLPQTNLVDVHIGKLRKKI-DQPGEVQMIESVRGAGFRL 275


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 51  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 110

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++        I+D++I  LRKK+ +    +  I TV G GY+LR
Sbjct: 231 VWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 273


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V +   G + +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    PV +LS  S + D+VRGL  GADDY++KPF+ +EL ARIRA++RR  
Sbjct: 61  EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRG- 119

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + +++  D L ++   +T    G  + L+ KE+ ++E L       L++   L H++
Sbjct: 120 THERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    ++D +I  LR+K+     G + +ETV G GY L
Sbjct: 180 DFAYDGTSNVVDQYIAYLRRKIDRPF-GISQLETVRGAGYRL 220


>gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+   A  +   L    F V +   G DG        +D +ILD+ L D+ G+
Sbjct: 1   MKLLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++++LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +A   K  I TV G GY L
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFDPK-LIHTVRGMGYTL 221


>gi|50118973|ref|YP_048140.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609499|emb|CAG72932.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 220

 Score =  132 bits (331), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   ++  L    FN+     G+ G    K   +DA++LDL L  + G 
Sbjct: 1   MRVLLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGATALKAAPYDAVVLDLSLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A    PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G +S+   +++V +    + L  +E  ++EL  L  N  LT+      LY 
Sbjct: 121 GQLQPVLTHGAVSLEPSSRSVTLNSEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY+L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + L+++D+K +   I+  L+ ++  V     G++ ++  +  E+D I+LD+ L  + GFE
Sbjct: 4   KALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMTGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASK 122

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +A S  +I  GDL +N + + V V    I++T +EY+++ELL+       ++E  L  ++
Sbjct: 123 NADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +V+ +DV I +LR+KL +      Y+ T WG GY  +
Sbjct: 183 GTEYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYFQ 225


>gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A  +   L     +      GE+G++  +  EFD +I+D  +  + G 
Sbjct: 1   MRILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            ++  LR     TPV  LS +  + D+V GLQ+GADDY+ KP+   EL+ARI A+  RR 
Sbjct: 61  TLVETLRREGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +L+  G+L ++L A+TV   G  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 HYHFDPQTNVIDVHISRLRSKIDKGF-DRPMLQTVRGAGYRL 221


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    F V + + G DG+ + +  ++D IILD+ L  + G+
Sbjct: 1   MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++++R +K  TPV  L+ +  + D+VRG + GADDY+ KPF   EL+ARIR  +R+S 
Sbjct: 61  TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V     RI LT +E+ M+ LL  R+   L++    + ++D
Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I TV G GYVL
Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQK-LIHTVRGMGYVL 219


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L   +E  L  E + V V + G DG+ L +  + D +ILD  L  + G ++
Sbjct: 5   ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR   + TP+ +L+    I D+V GL SGADDY++KPF+ EEL+AR++A +RR    
Sbjct: 65  CLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNPE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   D+S++     V     R+ LT KE+ ++E L       +T++  L  ++   
Sbjct: 125 EPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E  II+V+I  LR KL  A+  +  ++TV G GYV+R+
Sbjct: 185 FMGESNIIEVYIRALRLKLE-ASNPQRILQTVRGVGYVIRD 224


>gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
          Length = 227

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|313900629|ref|ZP_07834122.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954691|gb|EFR36366.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK +  + E  L+  N +V+    G  G+ + K    D I+LD+ L    GF+
Sbjct: 3   KILIIDDDKDVLIAAEQYLQKNNEDVFTATGGSKGLRVLKQETIDCIVLDVLLKGESGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    S P+  L+ +SS ED   G   GADDYI+KPF+ EEL  RI+A +R+   
Sbjct: 63  LCRKIRSFS-SVPIVFLTNLSSQEDLKNGFLMGADDYITKPFSLEELYLRIQARIRQYYQ 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q ++    L +NLDA+T+++Q +R+ LT  E+ ++ LL+       T       ++
Sbjct: 122 IPSRQKILNFFPLRINLDARTIQIQDNRVPLTMSEFDILVLLAQTPEHVYTISEIYQRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D      + V I  LRKKL  A G   +I+TVWG+GY   E
Sbjct: 182 KMPDMNSTHTVQVHIANLRKKLEEAWGDHMFIQTVWGKGYKFVE 225


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ALA  + + L+ E + V     G + + + +    DA++LD+ L D+ G 
Sbjct: 20  VRVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 80  TLLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSG 139

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A   +SL+  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 140 AAAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++++I  LR+K+   AG    I T  G GY+++  
Sbjct: 200 VWSYDFGGQANVVELYISYLRRKID--AGRSPMIHTRRGAGYLIKPG 244


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+  
Sbjct: 120 FKKYNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/235 (35%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           LN ++  R E     ++  I +LR K+         I TVWGRGY L    + +T
Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDT 239


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 130/228 (57%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G 
Sbjct: 17  LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  + + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS 
Sbjct: 77  EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   S++  GDL ++ D+  V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 137 ASEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A ++++ L+ E + V+V   G+ G+E       D ++LD+ L ++ G E
Sbjct: 4   RILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115
           VLR +R      PV +L+   +  DKV GL  GA+DYI+KPF  EE++AR+R      AI
Sbjct: 64  VLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGAI 123

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++         +   DLSVNL+ + V  +   I LT KEY ++  L   +N  L++E  L
Sbjct: 124 IQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++    E E  ++DV+I  LRKK+         I TV G GYV+R+
Sbjct: 184 LTVWGYDYEGETNVVDVYIGHLRKKIEEEINSP-LIRTVRGVGYVIRK 230


>gi|260769434|ref|ZP_05878367.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|260614772|gb|EEX39958.1| two-component system response regulator QseB [Vibrio furnissii CIP
           102972]
 gi|315181964|gb|ADT88877.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 218

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 121/206 (58%), Gaps = 8/206 (3%)

Query: 19  MLKSENFNVYVTDLGE--DGIE-LCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           M+ S + + Y  D  E   G+E + K  +F A+ILDL L DI G  VLR +R A  + P+
Sbjct: 16  MVTSLSRHGYTVDWVERGSGVETVLKTEQFMAVILDLTLPDIDGLMVLRHIRRAGFTLPI 75

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVN 135
            IL+    I+D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  G+  + I  G+LS++
Sbjct: 76  LILTARDDIDDRVKGLDGGADDYLIKPFALEELMARLRVLIRRQSGYCDTRIDVGELSLS 135

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
           L  ++V+ QG+R+ LT  E++++  L       L+KE     L+   +      I+V I 
Sbjct: 136 LSEQSVDFQGNRLKLTNNEFKLLASLMTHAGRVLSKEQLQQSLHGWDEGASDNAIEVHIH 195

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVL 221
            LRKK+SN     + I+ + G GY++
Sbjct: 196 NLRKKVSN-----HVIKNIRGVGYII 216


>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
 gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
          Length = 263

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 38  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 98  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRS- 156

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H    A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+
Sbjct: 157 SHLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILD 216

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++        I+D++I  LRKK+ +    +  I TV G GY+LR
Sbjct: 217 RVWNYDFAGRTSIVDLYISYLRKKIDSDR--EPMIHTVRGIGYMLR 260


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSK 123

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q            V G L+V  D   V    H + LT KE++++  L    N TLT+E
Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234


>gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 237

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL ED+  L   I+ ML  EN   Y+ D  +DG     + E     +   I D  L 
Sbjct: 1   MRLLLAEDEPDLGAIIQRMLNREN---YLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G E+ + LR    S PV +L+  S I+D V GL +GADDY+SKPF K EL+ARIRA+
Sbjct: 58  KISGLELCQKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV-----EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            RR+     + +  G L+++    +V     + Q   I LT  E++++E      N TLT
Sbjct: 118 QRRALHIQPNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  L++  D P   ++   I  LR+KL++  G K+ IETV G GY L
Sbjct: 178 RDQLLAQLWETDDAPISNVVSARIRLLRRKLAD-YGCKDLIETVHGFGYRL 227


>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 222

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +E   KSE F V +    ++ ++    Y F  +ILDLGL D  G E
Sbjct: 3   QILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGLPDADGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VL  LR   ++ P+ IL+    ++DKV GL  GADDY+ KPF+ +EL+AR++A +R    
Sbjct: 63  VLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFTP 122

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   + + + T  L ++L A+ V      + L  +E+ ++E L    +  L+++  L+ +
Sbjct: 123 RATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV+I  LRKKL     G + IETV G GY L+
Sbjct: 183 WGYDYDPGSNIVDVYIGYLRKKL-----GSDLIETVRGIGYRLK 221


>gi|288939789|ref|YP_003442029.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895161|gb|ADC60997.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   L +  F V     G +   +     + A ILDLGL  + G 
Sbjct: 1   MRLLLVEDDDQVAETVTAGLTAAGFLVERARDGREAWFMGDTEPYAAAILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A    PV ILS      ++V G+++GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLRQWRAAGQRLPVLILSARGDWTERVEGIEAGADDYLPKPFRFEELLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++V G   ++   +T+   G  IHL+ +EY+++  L  +    ++++     LY 
Sbjct: 121 GQPAPVLVHGSFRLDTRRQTLSRDGLPIHLSPQEYRLVSYLMQQAGRVVSQQELTEQLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   ++V + ++R+KL     G   I+T  G GY++
Sbjct: 181 QDFERDSNAVEVLVGRVRRKL-----GAELIQTRRGFGYLI 216


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I  G+L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 133/221 (60%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +   ++  L+  NF+    + G  GI + K   FD ++LD+ L D+ G+ 
Sbjct: 3   KVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSGWN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R +    PV +++  S   D++ G + GADDY+ KPF+  E++ARI+AI+ RS+ 
Sbjct: 63  VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKW 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    ++++ D++ V+V G +I LT KE+ ++ LL+      L++E  LN ++ 
Sbjct: 122 AESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +++ +D  I +LR+KL +    ++ I+TVWG GY L
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK---RDIIKTVWGYGYKL 219


>gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  I   L+   F V V   G DG  +     +D ++LD+ L D+ G+
Sbjct: 1   MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A    PV  L+   S++D+V+GL+ GAD Y+ KPF   EL+A +R ++RR  
Sbjct: 61  HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             AQS  +   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    +IDV I +LR K+      K  I TV G GY L
Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKMDEPYEPK-LIHTVRGMGYTL 221


>gi|124268353|ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124261128|gb|ABM96122.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 266

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL EDD ALA S    L+S+ + V  T  GE      K   +D +ILD+GL  I GF
Sbjct: 38  MHILLAEDDPALAESTARALRSQGWVVDHTPRGEPVPTSVKTDPYDLLILDIGLIGIDGF 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR +R    + PV +L+   +IED+V GL+ GADDY+ KPF   EL+AR++ + RR +
Sbjct: 98  ETLRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQ 157

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++L+A    +    + L+ +E+ ++E L  R    + KE  L  +  
Sbjct: 158 ARQGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG 217

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D      ++V++ +LR K+  A      I  V G GY++ E A
Sbjct: 218 WDDALSENAVEVYVSRLRPKIEPAG---LRIRAVRGFGYLVEEVA 259


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 133/228 (58%), Gaps = 5/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I+  L+ E +N +  + G   +++ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  K   + PV +LS  S   D++ GL+ GADDYI+KPF+ +ELVAR++A+ RR  
Sbjct: 64  LKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRRIE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  I  GD+ V+   ++V+ +   I L+ KE+++++LL   +   L ++  L  
Sbjct: 124 NLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    + + + +DV I  LR+KL +      YIETV G GY  RE +
Sbjct: 184 VWGYEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRFREGS 231


>gi|257867051|ref|ZP_05646704.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873386|ref|ZP_05653039.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877129|ref|ZP_05656782.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801107|gb|EEV30037.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807550|gb|EEV36372.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811295|gb|EEV40115.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 224

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDDK L+ +++ ++ SE  +V     G +G+   +   +D IILDL + ++ G+
Sbjct: 2   IKLLVIEDDKTLSDNMKEIV-SEIGDVTQAYDGSEGLYEAETGIYDLIILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ALR   + TPV IL+    +EDKV G Q GADDY++KPF +EEL+ RI+A+++RS 
Sbjct: 61  EVLSALRKKGLQTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++ +    L  NL    V  QG  + + GKE++++      +N  LTKE   + ++
Sbjct: 121 GLFNENTLEYNGLLCNLGTNEVSYQGQLLPIQGKEFELLLYFLQNRNIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E  + +++V++  LRK L      K  I T+   GY+++
Sbjct: 181 GFDSETTLTVVEVYMSNLRKHLRQTGIDKE-IRTLRNVGYIMQ 222


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIED+  +A  IEL L  E+F + V   G  G++L    E+D I+LD+ L  + G  
Sbjct: 29  RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K  TP+ +L+   SI D+V GL SGADDYI KPF  EEL+ARIR + RR   
Sbjct: 89  VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++++    L V ++ + V      + LT +EY ++       N  L +++ L+ +
Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E  ++DV++  LR K+ +     +YI TV G GYV+R+
Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKI-DFPNEDSYISTVRGIGYVMRK 251


>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 282

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 41  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 258


>gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 243

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ +++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDENSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHKPMIHTMRGAGYVLK 240


>gi|227820289|ref|YP_002824260.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227339288|gb|ACP23507.1| probable two-component response regulator protein [Sinorhizobium
           fredii NGR234]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ALA  +  +L+   + V V + G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNQALAEGLSTLLRDSGYAVDVVNDGASAHAVAAAESFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   S E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNRAAVLILTARGSPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++S++L A++    G  I +  +E  ++ELL +R    + K+  +  L  
Sbjct: 121 GLRSSIVSYGNVSLDLTARSFSAGGVPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D+     I+ ++ +LRK+L+        + T  G GY L + A  +
Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPYG---LTVRTARGIGYYLDKAANPQ 225


>gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I+  L  E + V     G   IE      F A+ILDLGL D+ G 
Sbjct: 1   MRILLVEDDPLLGDGIKTALVREAYTVDWFTEGHHAIEAAHNETFSAMILDLGLPDMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    + P+ IL+   ++E+++ GL +GADDY+ KPF+ +EL+AR+R + RR+ 
Sbjct: 61  TVLKRLR-ESTALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G LS++  + +V   G  + L  +EY ++  L+   +  L++    + LY 
Sbjct: 120 GRASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V +  LRKKL      K+ I TV G GY L  +A
Sbjct: 180 WGEEVASNAVEVHVHHLRKKLD-----KSLIMTVRGIGYRLDPHA 219


>gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD A++  +      E ++V     G++ I+L      D ++LDLGL D+ G +
Sbjct: 3   KVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVS-SSIDLMVLDLGLPDMDGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA R    S P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RRS  
Sbjct: 62  VARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRSVS 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  +I   D+SV++ A    +    + LTGKE++++ +L     + +++E  +  ++
Sbjct: 122 SDETVGMIKAQDVSVDISAHRAYLGDEELQLTGKEFELLTILLRSAGSVVSRESLMATMW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   K +D+ +  LR+KL +     +YI TV G G+   ENA
Sbjct: 182 SKDIETSTKKLDMHVSWLRRKLGDDVTEPHYITTVRGMGFRF-ENA 226


>gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 222

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 132/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A ++   L +E F V V   G DG+     +++DA++LD+ L ++ G+
Sbjct: 1   MRLLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIMLPELSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A+  TPV +L+      D+      GADDY+SKPF+   L+AR+RA++RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+TV     RI LT +E+ ++E L  R+   LTK   L H++D
Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  +++V++  LR+K+ +A  G   IETV G GY L
Sbjct: 181 AHYEGDENVVEVYVGYLRRKI-DAPFGTRTIETVRGVGYRL 220


>gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
 gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
          Length = 220

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F +     G+ G        +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EILKFWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G + ++  A TV   G RI L  KE  ++ L     N  L++      LY+
Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V I  LR+KL     G  +I TV G GY L E A
Sbjct: 181 WDEEVSSNAVEVHIHHLRRKL-----GTRFIRTVHGVGYRLGEEA 220


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 132/221 (59%), Gaps = 8/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ ++  V     GE+ ++  K  E+D ++LD+ L  + GF+
Sbjct: 5   KILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 65  VCQAIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +S     ++V G++ ++ +++ V +    I+LT KEY ++ELL++  N   ++E  L+
Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
            ++ G D P + + +DV I +LR+K+        Y+ T WG
Sbjct: 184 LVW-GVDYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223


>gi|71906819|ref|YP_284406.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71846440|gb|AAZ45936.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 221

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA SI   L+   F V      E          +D  I+D+GL  + G 
Sbjct: 1   MRILLVEDDTMLAESICEGLEKGGFTVDRLGAAEPAESALGLTHYDLAIIDIGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R +R+  +  PV IL+    ++D++ GL  GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  ELIRRVRLRGLQVPVLILTARDGLDDRISGLDLGADDYMVKPFQLPELLARMRALIRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S +  G + ++L  +     G  + LTG+E+++++ L L     + K+     L +
Sbjct: 121 SAASSELAAGGIRLDLARRVATAHGEIMDLTGREWEILQQLMLASPNVVGKQKMAESLSE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++++I +LR+KL    G    I T+ G GY L E
Sbjct: 181 WENEISANAVEIYISRLRQKLQ---GCGIEIRTIRGIGYRLDE 220


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L  +   V     GE+ +EL K  E+D ++LD+ L  + GF 
Sbjct: 4   RVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIRDFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGR 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    +++V  D+ ++ +++ V +Q   I+LT KE+ ++ELL+   +   ++E  LN
Sbjct: 123 KEEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 LVWGYEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYFR 228


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +LK   F V   + G DG+       FD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  K   PV I+S    +E++V GL  GADDY+ KP+  +EL+ARI A++RR+  
Sbjct: 63  VLKQIR-QKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++  G++ +N++      QG  I L+ +E+ ++  L    N   +K    
Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + LYD   E     I+V+I  LR KL     GKN+I T+ G GY L + +
Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKL-----GKNFIRTIRGLGYRLGQTS 226


>gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
 gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+    +V +   G DG+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR +K +TPV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLQRLRASK-ATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V     RI LT +E+ ++ LL+ R+   L++    ++++D
Sbjct: 120 PRESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +  ++DV I +LR K+ +    K  + TV G GYVL    KDE 
Sbjct: 180 MNFDSDTNVVDVAIRRLRVKIDDEFPVK-LVHTVRGVGYVL--ELKDEA 225


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E + V V   G D +       +DAI+LDL L  I GF
Sbjct: 1   MRVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      PV +L+    ++D++RGL +GADDY+ KPF+  EL AR+RA+VRR  
Sbjct: 61  EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H   ++  G + ++     V   G  + L+ KE+ ++ LL    +  LT+     H++D
Sbjct: 121 VHRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+D ++  LR+K+ +     + IETV G GY L
Sbjct: 181 DAFDATSNIVDQYVRYLRRKI-DLPPAPSLIETVRGVGYRL 220


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 16  KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A ++TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 76  VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 135

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GDL ++ DA  V+  G  I L+  E++++  L +     ++K   L+H++
Sbjct: 136 GDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 196 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 238


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + GE G++     EFD  ILDL L  + GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TPV ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKIRETK-NTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 242

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218


>gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 124/218 (56%), Gaps = 5/218 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  L  +++  L  + + V     GE+ + L   +E+D IILDLGL    G +
Sbjct: 3   KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  + +TPV IL+  ++ +++V GL+ GADDY+ KPF+ EEL+ARI  +++R   
Sbjct: 63  VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +  ++LD + ++V+  R  LT  E+ +  L     N   +K+  +  L D 
Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFALARLFLSHPNRVFSKDTLMQRLGDQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E +  +I+V+I KLR+ +     GK  IET+ G+GY
Sbjct: 183 HHERDSNLIEVYIRKLRQYM-----GKTAIETLRGQGY 215


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ +++  ++  L+   F V     G+ G +  K  +FD IILDL L  + G +
Sbjct: 4   RILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  +I  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR+RAI+RR   
Sbjct: 64  VCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIEQ 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                    +G  +S+ +  DL++      V V+   + LT KE++++  L+  K   LT
Sbjct: 124 TGGAVAKNEQGKGKSIQI-ADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++  LN +++     + +I+DV I  LR K+   +    YI+T+ G GY L E AK+E
Sbjct: 183 RDQLLNAVWNYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEEPAKNE 240


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + ++V     GE+ ++L K   +D I+LD+ L    GFE
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 64  VCQQIREYS-DVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSK 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +IV G++ ++ +++ V +    I+LT KE+ ++ELL++      ++E  LN
Sbjct: 123 RDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228


>gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 242

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGIDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218


>gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++EDD   A +IE ++K    +  N+     G  G+ L    ++D IILD  L  +
Sbjct: 1   MKILMVEDD---ATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             RG +   I     G L++ L  + V + G  I L  KE+Q+++ L    N  +++ + 
Sbjct: 118 --RGESLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+ 
Sbjct: 176 FEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQG 224


>gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 262

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           R L+IEDD   A  I   L+ +   V V   G  GI +     +D IILD  L +   G 
Sbjct: 31  RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 91  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL +NL  ++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+ +       I TV G GY L +  +D
Sbjct: 211 DYRFDPQTNVIDVHISRLRGKV-DKGFEPALIHTVRGVGYSLSDRPQD 257


>gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 219

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 11/222 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +VL+
Sbjct: 1   MIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQVLK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS   AQ
Sbjct: 61  QIR-QRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGVEAQ 119

Query: 125 -----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    + LY
Sbjct: 120 LANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLEDKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 180 DFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 216


>gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
 gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
          Length = 224

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L   I   L++E++++     G   ++     E+DA+ILD+ +  + G 
Sbjct: 1   MRILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    + PV +L+   SIED+V GL +GA+DY+ KPF  EEL+ARIR ++R  R
Sbjct: 61  TVLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLRTPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL V LD   V   G +I L+GKE+ ++  +   +   L++E    HL++
Sbjct: 121 DTGGVCCRVDDLEVRLDTHEVSRGGKQITLSGKEFALLRYMIQNEGIVLSREKMEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +IDV+I  LRKK+      K  I TV G GYVL+
Sbjct: 181 YDYPGGSNVIDVYIRYLRKKVDEGYETK-LIHTVRGTGYVLK 221


>gi|239629145|ref|ZP_04672176.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519291|gb|EEQ59157.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K + + IE +L  +N+ V     G DG++L   ++ D ++LDLGL D+ G E+
Sbjct: 7   IIIIEDEKNICNFIETVLTPQNYQVTCAYTGTDGLKLINTHKPDVVLLDLGLPDMDGLEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R A  S P+ ++S  +    KV  L  GADDY++KPF   EL+ARIR  +R S+ +
Sbjct: 67  IQEVR-AYSSVPIIVISARTMERSKVAALDMGADDYLTKPFGTAELLARIRTALRHSQRN 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L ++ + + V+V    +HLT  EY+++ LL+      LT E  ++ ++ 
Sbjct: 126 VSENSKYDVGGLLIDFERRLVKVNDQEVHLTQIEYKLVSLLAQNAGRVLTYETIISKIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + +I+ V +  +R+KL        YI T  G GY +RE
Sbjct: 186 PFADSDNQILRVNMAHIRRKLEENPAEPKYIFTEIGVGYRMRE 228


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I  +L  E + V  +  G + +   +    D +ILDL L D+ G E
Sbjct: 5   KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR AK + PV I+S      DK+ G   GADDY++KPF+  ELV R++A++RR +G
Sbjct: 65  VCRQLR-AKYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I    L ++  ++TVE+ G  I+LT +E+ ++ +L+   N   +++  LN 
Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      +   + V I +LR+KL         I+TVWG GY
Sbjct: 184 VWKNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGY 225


>gi|257065604|ref|YP_003151860.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256797484|gb|ACV28139.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 223

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDG---IELCKFYEFDAIILDLGLT 55
           M++L++ED++ L     L L  E  ++  YVTD+  DG   ++L    ++D IILD+ L 
Sbjct: 1   MKVLIVEDERKL-----LRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLP 55

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              GFEVLR +R       + +L+  S I+D+V+GL  GA+DY++KPF+ +EL AR+R++
Sbjct: 56  KKDGFEVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSL 115

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR     +  I    ++ +   + V  +G  + LT KE  +IE L L +   ++ E  +
Sbjct: 116 LRRKSIMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELM 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           NH++D   +     + V +  LRKK+  A  GKNYIE V G+GY + E
Sbjct: 176 NHVWDSNADDFSNTVRVHMSSLRKKIKKAT-GKNYIENVIGKGYKIYE 222


>gi|282900319|ref|ZP_06308270.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194824|gb|EFA69770.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 229

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           M IL++EDD  L  S+   L  E + V     GE     ++      +D II+D+ L  +
Sbjct: 1   MWILVVEDDYYLTESLTEALTMERYEVECVRDGEAAWRRLQDLSVINYDLIIMDITLPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + + LR    + P+ +L+   +I DK+ GL +GAD Y+ KPFN +EL+A++RA++R
Sbjct: 61  DGIRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLN 176
           R +    + +  GDLS++     V      IHLT KE+ ++E L LR N  + T+ + ++
Sbjct: 121 RGKPVTNNTLTWGDLSLDFSTYKVLYGKKPIHLTPKEFALMEAL-LRCNGRIATRSILID 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++   + PE + I  +I  LR KL N    KN IET+ G GY L+
Sbjct: 180 QIWAWENPPEEETIKTYIRNLRAKLINVGAPKNLIETIHGVGYRLK 225


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F V     G D +   + +  D I+LD+ L D+ GF+
Sbjct: 8   RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + EDK+RGL +G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 68  VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGA 127

Query: 122 ---HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A+   +T  D+ ++ ++  V  +G  + L+  E++++          L+K   L+H
Sbjct: 128 GDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDH 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D     +V I++ ++  LR+K+ NA      I T+ G GYVLR
Sbjct: 188 VWDYDFRGDVGIVESYVSVLRRKIDNA--DPRLIHTLRGVGYVLR 230


>gi|226228544|ref|YP_002762650.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091735|dbj|BAH40180.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+   F V V   GE  I      ++DAIILD+ +    G 
Sbjct: 1   MRILLAEDDTRLHDLLARALRERAFAVDVVADGEAAIIEAAVNDYDAIILDVTMPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR     TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RAI+RR  
Sbjct: 61  EVCAELRKRGKRTPILMLTARDALTDRVAGLDAGADDYLVKPFELDELLARLRAIMRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL V+  A+     G  ++LT +EY ++  L+ +    + +    +H++D
Sbjct: 121 VLQDERIVVGDLVVDTRAQQATRAGVPLNLTTREYTLLAYLARQAGRVIGRAELTDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +P    ++V++ ++RKKL + +     + T  G GY+L  +  D
Sbjct: 181 ANHDPASNALEVYVGRVRKKLESVS-DTPLLHTRRGAGYLLSADVTD 226


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+A+   ++  L  E FNV     GE+ +  C    FD +ILD+ +  + G EV
Sbjct: 5   ILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  + + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+  +
Sbjct: 65  LKIIR-EQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKY 123

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      Q ++   +L +++   ++   G  I LT KE+ +++L    +    TKE    
Sbjct: 124 SSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIYQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +  II+V I +LR+K+ +      YI+T+WG GY
Sbjct: 184 MIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGY 226


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ LA  ++L L  E + V V + G  G+   +  E D ++LD  +  + G 
Sbjct: 6   VRILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGV 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      PV +L+    IED+V GL +GADDY+ KPF+ EEL+AR+RA +RR++
Sbjct: 66  EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  +  DLS+N   + V      I LT KE+ +++ L       LT++  L  ++ 
Sbjct: 126 PEDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  II+V+I  LR KL  A      I+TV G GYV+R
Sbjct: 186 YDFMGDSNIIEVYIRYLRLKL-EAENESRLIQTVRGVGYVMR 226


>gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 219

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D +ILDLGL  + G 
Sbjct: 1   MRLLLVEDNIALADELLPLFKGHGYAVDWRVDGRDALLAAHDDPYDLVILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQRWRAEGLTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D +++        LT  E++++    L     L++     HLY
Sbjct: 121 GAVNSPRLEVGGLALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +++V I +LR+KL     G   IET  G+GY
Sbjct: 181 DGESERDSNVLEVHINRLRRKL-----GHQVIETRRGQGY 215


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +   L+   F V+    G   ++L    E D ++LD+ L D+ GF +
Sbjct: 9   LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGFTI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  L+   S++DKV+GL  G DDY++KPF+ EE+VARIRAI+RRS   
Sbjct: 69  TRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSHAE 128

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q+    ++   DL++N D   V   G  I ++  E+ ++  L    +  L+K   L+H+
Sbjct: 129 DQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     E+ I++ +I  LR+K+ +  G    I T  G GYVLR
Sbjct: 189 WDYDFRGEMGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 231


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  132 bits (331), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DDK L + +E  LK+ENF V V   G+ G++  K   +  IILD+ L  + G++
Sbjct: 3   KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  +R    + PV +L+   S  DKV GL+ GADDY++KPF   E VAR+++++RR   
Sbjct: 63  VLTEIRKLN-NVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121

Query: 120 -RGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              H +  I      L +++  +TV +  ++I+LT +E+ ++  L+  +    TKE    
Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H+++     + + I  F+ KLRKK+ N     +YI+T+ G GY
Sbjct: 182 HVWNNEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGY 224


>gi|149908081|ref|ZP_01896749.1| Two component response regulator [Moritella sp. PE36]
 gi|149809087|gb|EDM69018.1| Two component response regulator [Moritella sp. PE36]
          Length = 226

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD  +   +    + E + V     G DG+ L     +D I+LD+ L    G 
Sbjct: 1   MNVLLIEDDLHITRFLTQGFRQEGYTVMHAGDGIDGLHLATTEHYDVIVLDIMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV ILS   S+E++V GL+SGADDY+ KPF+  EL AR + + RR R
Sbjct: 61  AVLSELRGRGYTTPVIILSAKHSVEERVFGLKSGADDYLVKPFSFSELSARCQILTRRDR 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  +  +   DL ++L  +T+      ++L  +E+ +I+LL     T L+K   L  +
Sbjct: 121 SQATPVHQLCYHDLKLDLLKRTLHRSNQLLNLNQREFVLIQLLLQNAETVLSKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+      K++    I T+ G GYVL+
Sbjct: 181 WGYQFDPQTNVVDVLVCRLRSKVD-----KDFELPLIHTIRGVGYVLK 223


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++ +  ++   L+   + V  +  G +  +LC    +D ++LDL L  + G 
Sbjct: 1   MRLLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR ++  +  T V ILS  S + DK+ GL  GA DY++KPF+ +EL ARIR ++RRS 
Sbjct: 61  EVLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + ++ G L ++ +A+T    G  + LT +E+ ++E L +     ++ E  + H++D
Sbjct: 121 TQADAALMWGGLCLDTNARTASCNGIPLELTMREFAILEYLMMHMGRPVSAEELMEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V+I  +R+KL  A      I  + G GY++
Sbjct: 181 SEADPFSNQVKVYISVIRRKLL-AVTKDEIIRNIRGAGYLI 220


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +    ++ L+ E F V   + GE G+EL   Y    +ILD+ L  I GFE
Sbjct: 3   KILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + LR       + +L+  +   D++ GL+SG DDY+SKPFN  EL+ RI++++RR  S
Sbjct: 63  VCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLDS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  LI      ++L +K+    G  I LT  E  +I +         ++   LN  +
Sbjct: 123 IQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMTW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E ++KI+DV I +LR K+ + +    YIETVWG GY    N
Sbjct: 183 GEEFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227


>gi|15675198|ref|NP_269372.1| putative response regulator [Streptococcus pyogenes M1 GAS]
 gi|71910761|ref|YP_282311.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS5005]
 gi|13622364|gb|AAK34093.1| putative response regulator [Streptococcus pyogenes M1 GAS]
 gi|71853543|gb|AAZ51566.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS5005]
          Length = 224

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I  PV I++    ++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I  G+L V+L  K V+V+G  + L GKE+ ++  L   +N  L K    + L+ 
Sbjct: 121 KFADKNISFGNLVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V+I K+RKKL       N ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYISKIRKKLKGTC-FVNRLQTLRSVGYILKNN 223


>gi|293603411|ref|ZP_06685838.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818184|gb|EFF77238.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 122/232 (52%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ +A  +   L    F   V D   D      F    E+DAI++DL L D 
Sbjct: 1   MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR +R     TPV +L+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VR
Sbjct: 58  HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G LS + +++   + G  + LT +E+  +  L  R    + K      
Sbjct: 118 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++    E     I+V + +LRKKL   AG    I TV G GY+L   A + T
Sbjct: 178 VFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESVASEST 226


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA +I  +LK+  ++V V   G+ G++      +D IILD+ L  + GF
Sbjct: 1   MRILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R  KI TP+  L+    I DKVRGL  GADDY++KPF  EEL+ARIR ++RR  
Sbjct: 61  DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D  +NL    +      + L  KE+ ++  L    N  +TKE+ +  ++ 
Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + E   ++V+I  LRKKLS        I TV G GY L  N   E+C
Sbjct: 181 FDADVEYNNVEVYISFLRKKLSFIKSNV-IIRTVRGVGYCLGVN---ESC 226


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          I V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWKEVFYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++AL   +  ML+ E ++V V   G+ G +L     +D +ILD  L +  G 
Sbjct: 1   MRILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R++R      PV  L+   +++D+V+GL +GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               S    +  GDL ++   +    QG RI L+ KE Q++ +L       ++ +     
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   + P   ++   I  LR+KL  A G    I +V+G+GY
Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKL-EAPGETPLIFSVYGKGY 221


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+  +A  IE  L++  F   V   G+  ++     +FD ++LDLGL    GF 
Sbjct: 3   KILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGLPGKDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLRALR  +++ PV IL+   S+ D V GL+ GADDY++KPF  EEL+AR+R  +R + R
Sbjct: 63  VLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTDR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G+LS++L  +  +V    + LT +E+ M+EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++DV++  LR+K+     G   I TV G GY L
Sbjct: 183 YDFDPGSNVVDVYVRALRRKI-----GSTRIHTVRGMGYRL 218


>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A+A  +   L  E + V     G  G  L +    D +ILDLGL D+ G +
Sbjct: 3   KVLLVEDDPAIAEPLARALGREGYEVSAQTTG--GAALQQVGGCDIVILDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL SGADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 VT D  +      VEV  HR       + LT KE+ ++ +L     + +++E  
Sbjct: 121 E-----VTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQV 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++        K +D+ +  LR+KL + A    YI TV G G+
Sbjct: 176 MREVWGSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGF 220


>gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 132/229 (57%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+      +E  L+     V     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKLLLIEDNDKTRAWLEKGLREAGLVVDTVADGRDGLHLALEQDYALIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR AK +TPV  L+   ++ D+V+GL+ GADDY+ KPF+  EL+AR+RA +RR  
Sbjct: 61  QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L V  DL+++         G RI LT +E+ ++ LL+ R    L + +  + ++ 
Sbjct: 120 PAAATLQV-ADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E  ++DV I +LRKK+ +    K  IETV G GY  R NA +++
Sbjct: 179 INFDSETNVVDVAIRRLRKKIDDPFPLK-LIETVRGMGY--RLNAPEQS 224


>gi|119383064|ref|YP_914120.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119372831|gb|ABL68424.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 223

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+ +LA  +  +L+   + V V   G     L     FD +ILDL L  + G 
Sbjct: 1   MRILLVEDNLSLAEGLTALLRQSGYAVDVVHDGASAEALAAAESFDLVILDLNLPQMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRA+R  +    V IL+   + E++VRGL  GADDY+ KPF+  E  ARIR+++RR  
Sbjct: 61  EVLRAMRARRNPAAVMILTARGAPEERVRGLDLGADDYLIKPFDIGEFEARIRSLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  GDL ++  A++  + G  + L  +E  ++ELL +R    + +E  +  L  
Sbjct: 121 GLRNSTVSFGDLVLDQTARSFLLAGQPLDLPARERGLLELLIMRAGKVVARESIVQSLTS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+L+ A      + T  G GY L
Sbjct: 181 LEDDLSANAIEQYVSRLRKRLAPAG---LTVRTARGIGYFL 218


>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + + V D G+ G++L   + +D +ILD  L  + G 
Sbjct: 1   MRILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V GL  GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRSP 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q  +   DL ++ + +     G  I L+ KE  ++    L     LT E    
Sbjct: 121 TFEANISQERLKAADLELDPENQMAYRHGRGISLSEKEVMLLSYFMLHPGQLLTHEQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           HL+  +++P   ++   +  LR+K+  A G    I TV+G+GY
Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKIE-ADGELPLIHTVYGKGY 222


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
          Length = 223

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A +I  ML+     V +   GEDG+ + +   FD +I+D  +    G 
Sbjct: 1   MRILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  +LS +  ++D+V GL +G DDY+ KP+   EL AR+ A+ RR  
Sbjct: 61  SMISILREEGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L A+TV+     I L  +E++++E L       +T+ M L  ++
Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +IDV I +LR K+       + + TV G GY L
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKPF-DTSMLHTVRGAGYRL 221


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGFE 61
           IL++ED++ LA+++E  LK E FN  V   GE+G+ +     + D ++LDL L  + G E
Sbjct: 5   ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R +R      + PV +L+      DKV G ++GADDY+ KPF   ELV RIRAI+RR 
Sbjct: 65  VCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRRV 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  + +L+  G L V+L+   V V G    LT  E++++     RK     ++  LN
Sbjct: 125 QPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTLLN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++      + + +D  + +LR+KL  A     Y+ET+ G GY  R+    E
Sbjct: 185 DVWGVNAFVQTRTVDAHVKRLREKLGPAG---KYMETIRGVGYRFRDRPDGE 233


>gi|288905343|ref|YP_003430565.1| two-component response regulator [Streptococcus gallolyticus UCN34]
 gi|306831423|ref|ZP_07464581.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978330|ref|YP_004288046.1| transcriptional regulatory protein CiaR [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732069|emb|CBI13634.1| putative two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426208|gb|EFM29322.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178258|emb|CBZ48302.1| Transcriptional regulatory protein CiaR [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +   +L+V+    T    G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KYNDNTLSYEELTVDTSTNTTIANGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL      KN ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFAKN-LQTLRSVGYILK 221


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 130/224 (58%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+  V + G + +   +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ S P+ +L+   +  DKV GL+ GADDY++KP++  ELVARIRA++RR RG
Sbjct: 63  VCRQLR-SRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRR-RG 120

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++L+ +    G + ++++   V V G  + L  KE+ ++ELL       LT+   ++ 
Sbjct: 121 DVEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        Y+ TV G GY L
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKL 224


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++++   ++  L    F     + G+   +L     FD I+LDL L ++ G E
Sbjct: 4   RILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V ++LR  K+STP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RRS  
Sbjct: 64  VCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSAV 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q        S ++ GD+ +  +   + +    + LT KE++++  L+      LT++ 
Sbjct: 124 PKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LN +++     + +I+DV I  LR+K+        YI+TV G GY L
Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKL 231


>gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 132/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L+ S++  L +E ++V     G++G +L +   +D IILD+ L    G 
Sbjct: 1   MRILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  ++ TP+ +L+   SI+D+VRGL  GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  G L ++    TVE +G  I LT +EY ++E         +T++M   H+++
Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +IDV++ +LR+K+ +A      + T+ G GY L
Sbjct: 181 YDFECSSNVIDVYVRRLRRKI-DAPFTTKLLATIRGVGYCL 220


>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 233

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 127 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 229


>gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 260

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  + G+E         FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 6   VKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 66  DIVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 226


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ ++  ++  L+ E F V     G + I L     +D IILD+ L    GF
Sbjct: 8   LRILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR +   TPV +L+ + S++++V+GL +GADDY+ KPF  +EL+AR+ A++RR R
Sbjct: 68  EVCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPR 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DLS++  + TV+     I L+ KEY+++E L+   +  L++      ++D
Sbjct: 128 ESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++DV+I  LRKK+ +    K  I TV G GY L
Sbjct: 188 QDFFSDSNVVDVYIRYLRKKIDDPFPTK-LINTVRGFGYKL 227


>gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
 gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
          Length = 236

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 117/211 (55%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 25  SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S   +I  G 
Sbjct: 85  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGP 144

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +++ ++  L+ E F V + D G+ G+EL     +D ++LD  L  I G 
Sbjct: 1   MRILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R  R     TP+  L+   ++++ + GLQSGA+DYI KPF+ EEL+ RIR  +R  +
Sbjct: 61  ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+     G + ++ +   V      I LT KE+ ++E L   KN    +   +  ++D
Sbjct: 121 G-AKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDVFI  LRKKL +    ++YI+T+ G GY+ +E
Sbjct: 180 IHFDYNTGVIDVFINSLRKKL-DLQKDEDYIQTIRGVGYIAKE 221


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|258622113|ref|ZP_05717139.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|258624051|ref|ZP_05719003.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258583661|gb|EEW08458.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258585437|gb|EEW10160.1| DNA-binding response regulator [Vibrio mimicus VM573]
          Length = 236

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G       K  +F A+ILDL L D+ G 
Sbjct: 19  MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 79  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  G+L+++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 139 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I+ V G GY++
Sbjct: 199 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 234


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A   +  L+  +F V +   GE G++L    +FD IILD+ L  + GFE
Sbjct: 3   RVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R R 
Sbjct: 63  ICKQIREKK-DIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRR 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     D      L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGY 225


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +   +   L    F V +   G DG+ +      D I+LD+ L  + G+
Sbjct: 1   MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+L ALR    K   PV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++RR
Sbjct: 61  ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    +  I  GD+ +++  + V   G RI LT KE+ ++ LL+ R++  L++ +  + +
Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   E +  +ID  + +LR K+ +    K  I T  G GYV
Sbjct: 181 WDINFESDTNVIDAAVRRLRSKIDDPFETK-LIHTQRGMGYV 221


>gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 221

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   I   L+ E   V +VTD G          EFD ++LD+GL    G
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR LR   + TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+
Sbjct: 60  LDILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY
Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDKA+ + +   L  +++ V   + G D +EL +    D +ILD+ L +  G E+
Sbjct: 2   IYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVMLPEKDGLEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    S P+ +L+      DKV GL+SGADDYI+KPF+  EL++R++A++RRS   
Sbjct: 62  LKEIREFS-SIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSEKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +  G + +N+  +TV+V G +I LT KE++M+ L        +T+E FL  ++   
Sbjct: 121 DREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL +A  G+N I+TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRNKLKSA--GEN-IKTVRNLGYKLGE 218


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSR----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R++      A S+ +T  DLS++   + V     RI LT  E+ ++E+L       LT+ 
Sbjct: 120 RTKLEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRS 179

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 180 RILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|116333023|ref|YP_794550.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098370|gb|ABJ63519.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+KAL+  I  +++         D GE G  L     FDAIILDL L    G +
Sbjct: 6   KVLVVEDEKALSADIVELIEPICETTTAFD-GEQGEFLASQGVFDAIILDLMLPGESGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV IL+   +I DK+RG   GADDY++KPF++EEL+AR++A+++R+ G
Sbjct: 65  LLLHIRNQGVKTPVLILTAKDTIADKLRGFNDGADDYVTKPFHREELLARMKALLKRT-G 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H  S   I  G L +N         G  + L G+E+ ++  L     T +TKE   N L+
Sbjct: 124 HLNSSDTIALGQLEINTSKHLATFNGAPLTLKGREFDLLAYLVGNPGTIITKEQIFNRLW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               E  + +++V++  LRK+L + AG    + T+   GY++   A DE
Sbjct: 184 GFDSETSLSVVEVYMSNLRKELKH-AGSDLSLRTIRNAGYIVE--APDE 229


>gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+     G  G+      ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    +  +V G L + L  + V + GH + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGQSTPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223


>gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 219

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  +   I+  L    F V + TD G  G E      +DA+ILDL L  + G
Sbjct: 1   MRILLIEDDALIGDGIKTGLSKMGFCVDWFTD-GRQGKEALHSAPYDAVILDLSLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+
Sbjct: 60  RDILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S +  G +++N   +   + G  + L  KE+ ++ELL   K   L +++    LY
Sbjct: 120 SGQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 180 NWDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLSE 218


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ L+  +   ++   + V  V D     + L     FD +ILDLGL  + G
Sbjct: 1   MRILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F VLR+LR      PV IL+   +  D+V+GL  GADDY+ KPF+  EL AR+RA++RR 
Sbjct: 61  FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     +   G L+ +   +   + G  + LT +E  ++E L LR    ++KE  L  LY
Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +E     I+V+I +LRKK+  A      I T+ G GYV+ +
Sbjct: 181 SYAEEASNNAIEVYIHRLRKKIEPAG---VTIRTIRGLGYVIND 221


>gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 239

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 133/233 (57%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+A+ + I   LK   FN  +   G + + L    ++D + +DLGL DI G +
Sbjct: 6   RILIIEDDRAVRNLISNTLKINRFNYDLAVNGSEALLLFTTNKYDIVFVDLGLPDIDGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++  R    +TP+ ++S  S+ EDK+  L +GADD+++KPFN EEL+AR+R+ +RR   
Sbjct: 66  LIKKFREFS-TTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRLNY 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R         GD+ ++  +++V V+G  IHL   EY ++ LLS      LT +  L
Sbjct: 125 SENNRIDNNVTFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYIL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKD 227
             ++    + ++  + V++  LRKK+   +  K YI+T  G GY ++R N  D
Sbjct: 185 KTIWVNYLDSDLSSLRVYMTSLRKKIEKVSCEK-YIQTHIGVGYKMIRVNKSD 236


>gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L  +I   L+   F V     GE    +     +DA+ILD+ +  + G 
Sbjct: 1   MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR  +++ P+ +L+   +++++++GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  GDL ++   +     G  + LT +E+ ++  L+      +++     H++D
Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   +IDV++ +LR+K+ + AG +  + T  G+G +L ++ 
Sbjct: 181 ENHDPNANLIDVYVSRLRRKV-DGAGRRPLLHTRRGQGVLLSDDG 224


>gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++AL  +I   LK   ++V     G    EL    ++D ++LDL L    G 
Sbjct: 1   MRILVIEDERALCETIVRSLKRLAYSVDFCYDGNKANELLGIEKYDLVLLDLNLPGADGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     T V ILS    + DKV GL +GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  TVLRTLRQTDRDTGVLILSARCEVADKVEGLDAGANDYLTKPFHLEELEARIRSLTRRRF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G ++ +  A+     G  + LT KE  ++E L L +   +++E  L+H++D
Sbjct: 121 TQNNVVLNCGKVAFDTKARVAVADGQELSLTRKEIGILEYLLLNQGRPVSQEELLDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     I V I  LRKKL  AA G + I    G GYV+ E
Sbjct: 181 NSVDNFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGYVMEE 222


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A+ S PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR +G
Sbjct: 63  VCRQLR-ARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + L+ T    G + ++++   V V G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 EPEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGY 222


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I L L+ E F V V   GE+ +    F   D +ILD+ L  + G+ V
Sbjct: 6   ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++TP+ +L+      D+V GL+ GADDY+ KPF+  ELVARI+A++RR+RG 
Sbjct: 66  CREIR-KTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARGG 124

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             S  ++    L V+     VEV G  + L  KE++++  L+       ++E  L +++ 
Sbjct: 125 RDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVWA 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + + +D  I +LR+KL  A   K YI TVWGRGY
Sbjct: 185 YDYLGDTRTVDTHIKRLREKL-EAGSEKRYIRTVWGRGY 222


>gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   + V   + G  G+ +    E+D +ILD  L  + G 
Sbjct: 1   MKLLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L A++      PV ILS M S+ED+V GLQ+G+DDY+ KPF   EL+AR+  I+ R+ 
Sbjct: 61  KILSAIKATIEQLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G  Q+ +    L+V+L A  V      + L  KE+Q+I+         +++      +
Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL   AG +N + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCQNLLHTVRGAGYVLR 223


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 133/234 (56%), Gaps = 14/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L +DG+E          DA+ILD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R+     G +Q +  + DL+++   + V   G +I LT  E+ ++E+L       LT+  
Sbjct: 120 RTVSDDSGDSQKMTFS-DLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSR 178

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++ G D P     ++V+I  LR+K + A G    I TV G GYVLRE   
Sbjct: 179 ILEEVW-GFDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 230


>gi|73540232|ref|YP_294752.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72117645|gb|AAZ59908.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 1   MRILIAEDDDVLADGLTRSLRHSGYAVDHVANGLEADSALSTQTFDLLILDLGLPRMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+    ++++V+GL  GADDY++KPF   EL AR+RA+VRR  
Sbjct: 61  EVLKRLRARGAMLPVLILTAADGVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYMNEQMLDLSAREVGLLEILLTRCGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218


>gi|228477550|ref|ZP_04062183.1| transcriptional activator protein CopR [Streptococcus salivarius
           SK126]
 gi|228250694|gb|EEK09892.1| transcriptional activator protein CopR [Streptococcus salivarius
           SK126]
          Length = 224

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  TVLRELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  GD+ VNL   +  V    + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFDQNTLSFGDVRVNLATNSTFVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  V +++V++ K+RKKL       N ++T+   GY+L+
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFATN-LQTLRSVGYILK 221


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+ +L  S++ ML+ E F V     GE+ + L +   FD I+LD+ L ++ GF
Sbjct: 1   MKLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  ++ TPV  ++   S+ED+V GL+ G DDYI KPF   EL ARIRA +RRS 
Sbjct: 60  SILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSG 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +L   G + +    K ++V G  + LT  +Y+++E L       LT+E   + +
Sbjct: 120 NMTIDHTLRYRG-IELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +    +  + I++V+I  LRKKL      K+ I+ V G GY+L+E  K
Sbjct: 179 WGFESDTTIAIVEVYIHHLRKKLEPFGYHKD-IQNVRGIGYLLKEPDK 225


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L+ ENF   V   GED +E  K  ++D  ILD+ L  + G+E
Sbjct: 7   RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +  S PV  LS   +  DKV GL+ G DDY+SKPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLR-SFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   I    ++++ DA T       I LT +E++++  L       +++E  L   +
Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E K +D  I +LR K++ A    + +ETV G GY  R+
Sbjct: 186 GWEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRFRQ 229


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  131 bits (330), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S    +  I+  +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MRVLLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIMLPGHSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G L ++    +V+   + I LT +E+ ++E L   K+  +TK   L +++D
Sbjct: 121 PQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHYHGPDNVVEVYVGYLRRKI-DIPFGTNTIETIRGVGYRL 220


>gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L+     V     G + +      E++ ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA++RR+ 
Sbjct: 61  ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ-MIELLSLRKNTTLTKEMFLNHLY 179
           G +   I   DL V     TV   G R  LT +E   +IELL+  + T L++     +LY
Sbjct: 121 GRSTETIQYRDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLT-HQGTPLSRARIEENLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++E E   ++V I  LRKKL     G   I+T+ G GYV+
Sbjct: 180 GWQEEVESNTVEVHISNLRKKL-----GPGIIKTIRGVGYVV 216


>gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281437|gb|ABR89847.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED+      ++  L  +   V V + G DG  L    ++DAI+LD+ L    G 
Sbjct: 1   MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ALR  K STPV +L+    ++D++ GLQ+GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  EVLQALRRQK-STPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++L A+       R+ LT KE+ ++  L+  +   L+K + +  ++D
Sbjct: 120 PQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E    +++V I +LR KL   +  K  + T+ G GY+L E ++
Sbjct: 180 VNFESNTNVVEVAIKRLRAKLDEPSEVK-LLHTIRGMGYLLEERSE 224


>gi|309779544|ref|ZP_07674305.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921785|gb|EFP67421.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L  ++   L+   +N        D  +      F+AI+LDLGL D  G   
Sbjct: 4   ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHTF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A    PV I S   ++ ++++GL SGADD++ KPF  +EL+AR+RA++RR  G 
Sbjct: 64  LEELRAAHSDVPVIIASARDALSERLKGLDSGADDFLVKPFPVDELIARLRAVLRRHAGQ 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + +    G+L V    K V  +G  I LT +EYQ++  L  R +  + +E  ++ LY   
Sbjct: 124 STNQWNVGNLVVEPSQKRVTQEGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D      ++V I  LR+KL N       I+T+ G GY++  N
Sbjct: 184 DSVSANALEVVIHHLRRKLGN-----ETIQTIRGVGYMIGGN 220


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 14  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 134 AAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED I+  +  E   FD IILD+ + ++ 
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 66  GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+  
Sbjct: 125 FKKYNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVA 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 185 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 247

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++   ++  V    S + LD  T EV     RI LT  E+ ++E+L       LT+   
Sbjct: 118 RTKPEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 228


>gi|228917720|ref|ZP_04081261.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841957|gb|EEM87063.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 222

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSSLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNEIAFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM
           2366]
          Length = 224

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDI 57
           M++L++ED+K LA+ +E  LK      Y+ DL     DG+E      +D I+LDLGL D 
Sbjct: 1   MKVLIVEDEKTLAYEMEDFLKKA---FYICDLAHNISDGLEKISANSYDFILLDLGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   +         IL+   ++ED++ GL  GADDY+ KPF+  EL +R++AI R
Sbjct: 58  DGLTLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     + L+  GD  ++L  + +   G +I L+ KE+ ++  L L  N  LT+     H
Sbjct: 118 RKFNLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSEH 177

Query: 178 LYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     D+ +   ID  I  +RKKL NA    N++ETV G GY +++
Sbjct: 178 IWGTFADDDYDSNYIDAHIKNIRKKL-NAWAATNFLETVRGVGYRIKK 224


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +A  I L L  E + +     G + + L +    D +ILD+ +  + G+EV
Sbjct: 8   ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R  +   P+  LS  +S  DK+ GL  GADDY++KPFN  EL+AR+ A +RR R  
Sbjct: 68  VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA S IV G L+++ + + V +   RI LT KE+ ++ LL+       + E 
Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++ +   E     + V I  LRKKL      + +I+TVWG GY  +
Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  K  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       +S++  GDL+VN D + V V+G  + LT KE+ +++LL+  K   L+  
Sbjct: 120 FKKYNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|319793018|ref|YP_004154658.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595481|gb|ADU36547.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 224

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +LA ++   L ++ F V V     +        ++ A++LDL L D  G 
Sbjct: 1   MRILLVEDDTSLADAVCSYLLAKAFVVDVAPSLAEARGALLSVQYAAVLLDLHLGDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  +    V +L+    + D++RGL +GADDY+ KP++  EL+AR+RA+ RR  
Sbjct: 61  SLLPQVRALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARLRAVERRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++  G L ++L    V   G  + LT KE+ ++ +++ R     T+E   + LY 
Sbjct: 121 ANTSPVLHFGTLEIDLAHDRVRKDGTPVVLTQKEWALLRVMATRPERIHTRENLADALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DE +   ++VFI +LR+KL     GK++I+T+ G GY L  +A DE
Sbjct: 181 FGDEADSNTLEVFISRLRRKL-----GKSHIQTLRGLGYRLSFSADDE 223


>gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 280

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  ++G+E         FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADG---LVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   +    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|302878154|ref|YP_003846718.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580943|gb|ADL54954.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 220

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL+EDD  +  ++ + LK   ++V   D  +DG+      E      ++LDLGL   
Sbjct: 1   MRILLVEDDAMIGAAVSVTLKDAAYSV---DWVKDGVTASSVLEQGEHQCVLLDLGLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR+   + PV I++    +ED+++GL  GADDY+ KPF+  EL+AR+RA++R
Sbjct: 58  DGLDVLRRLRLGGNTMPVIIITARDGVEDRIKGLDFGADDYLVKPFDVNELLARLRAVIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A  L+  G ++++  +   +     + L+ +E+ ++  L LR    LT+      
Sbjct: 118 RQGGQAAPLLSNGRVTLDPASHQAQCDDTLVTLSAREFALLHALLLRPGAILTRAELEER 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y   +E E   +D  I  +RKKL     G + I+ V G G+++ ++
Sbjct: 178 IYGWNEEVESNAVDFLIHGIRKKL-----GADAIKNVRGAGWMVEKS 219


>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227


>gi|301056576|ref|YP_003794787.1| putative DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378745|gb|ADK07649.1| putative DNA-binding response regulator [Bacillus cereus biovar
           anthracis str. CI]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYIRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 620

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 9/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L+ ++  +L   ++ + +   G+ G+EL    E+D I+LD+ +  + G 
Sbjct: 1   MKILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQVPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + R LR      P+ +L+   S  D V G  +GADDYISKP   E L+ARIR ++RRS 
Sbjct: 61  SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120

Query: 120 ----RGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               R  AQ+L+      G+L ++LD+  V      I LT  EY ++EL     +   ++
Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L+ L+   D P  + I   I  +RKKL      +  IETV+G GY L+   K
Sbjct: 181 SAILDRLWGLEDAPTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRLKSQPK 235



 Score = 45.8 bits (107), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +   L      V      +   E+    + D ++LD+ +  I G E
Sbjct: 499 KVLIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPFINGLE 558

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R  +   + P+ +++  +  E   +   +GADD+ISKP    ELV R+ + + RS
Sbjct: 559 LCQVVRQDIQWENLPILVVTAHTDPESLQKAFIAGADDFISKPVLGPELVTRVISRMERS 618

Query: 120 R 120
           R
Sbjct: 619 R 619


>gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
 gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F +     G+ G +      +DA++LDL L  I G 
Sbjct: 6   MRILLIEDDRLIGDGLKVGLTQLGFTLDWFMDGKQGQQALFDAPYDAVVLDLSLPHIDGM 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 66  DILKFWRKQGRDEPVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRRRS 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +V GD+ ++  A TV  QG  + L GKE  ++ L        L++      LY+
Sbjct: 126 GQLSPTLVHGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  LR+KL     G  +I+TV G GY L
Sbjct: 186 WDEEVSSNSVEVHIHHLRRKL-----GSKFIQTVHGIGYRL 221


>gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+T+ G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTLRGVGYML 221


>gi|303238774|ref|ZP_07325306.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593653|gb|EFL63369.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 238

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 128/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++E+D  L+  +  +LK  ++ V   + G+DGI+      +D I+LD+ L    G 
Sbjct: 1   MRILVVENDIYLSKVLSQILKKNSYTVTCVNNGDDGIDFALTGIYDIILLDVVLPKTDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  +I+TPV +LS  S I  KV GL SGADDY+ KPF+ +EL+AR+RA+ RR +
Sbjct: 61  TVLQRLRKIRITTPVILLSARSEISAKVAGLDSGADDYLVKPFSLDELLARVRALGRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G   + +++V GD+ +N  +  +  +   + LT +E +++E L  RK     KE  +  L
Sbjct: 120 GELFSNNILVYGDIELNTASLKLSTEQSEVALTCRECELLEFLIRRKGIISPKERIIEKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +          ++V+I  LRKKL    G    I T  G GY +    KD
Sbjct: 180 WGFDSSAGANHVEVYISFLRKKL-EYIGSNVVITTHRGAGYEINTTCKD 227


>gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFSVK-LIHTVRGVGYVL 219


>gi|262173228|ref|ZP_06040905.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|261890586|gb|EEY36573.1| DNA-binding response regulator [Vibrio mimicus MB-451]
          Length = 218

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G       K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  G+L+++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I+ V G GY++
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 216


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  T  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 53  RILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGLE 112

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 113 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 172

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 173 LARDSRIDAGTLDVAG-LSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDL 231

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 232 LNAVWGYQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278


>gi|75760053|ref|ZP_00740117.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900246|ref|YP_002448657.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492441|gb|EAO55593.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218545333|gb|ACK97727.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +       +G+ +    ++D I+LD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|330809365|ref|YP_004353827.1| two-component regulator system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377473|gb|AEA68823.1| Putative two-component regulator system, response regulator
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 219

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+ED   L  ++   +  +   V +V +L +    +     +D I+LDL L D  G
Sbjct: 1   MRVLLVEDSPRLGDAVREQIADDGHAVDWVQNLAQARSSVST-TAYDLILLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR  R A  +T V IL+    I D++ GL +GADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LDFLRQRRSAGDATAVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+    I  G+L V++ A+T++  G  + LT +E+ ++E    R    L+K    + LY
Sbjct: 120 SGNPNPQIRLGELHVDMTARTLQRAGMAVDLTAREWALLEAFIQRPGALLSKGQLEDRLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E   I+V+I +LRKKL     G++ IETV G GY
Sbjct: 180 AFGAEIESNTIEVYISRLRKKL-----GRDLIETVRGMGY 214


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +E       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR-RG 120

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + ++      G + ++++   V V+G  + L  KE++++E+L       LT+   ++ 
Sbjct: 121 EDEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   YI TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGY 222


>gi|212633146|ref|YP_002309671.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212554630|gb|ACJ27084.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F + +   G+ G++L     FD I+LD+ L  + GFE
Sbjct: 3   RILLIDDDLGLSELLAQLLELEGFELTLAHDGQVGLDLAVEQSFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR+  
Sbjct: 63  VLRALRTKK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTNV 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H     Q++   GDL ++   + V  Q   I LTG E+ ++  L        +KE+    
Sbjct: 122 HTDDKTQAVQTFGDLKLDPARQEVHCQDQLIVLTGTEFSLLFELVHHAGELASKEVLSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +  P  + +D+ +  LRKK+     G+  ++T+ G+GY+
Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERIDGRPRVKTIRGKGYI 224


>gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 227

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L +    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   I+TP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGIATPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAE 225


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D +ILDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGY 222


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK    + 
Sbjct: 124 SATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYSL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 14/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A+A  +   L  E + V     G  G  L +    D +ILDLGL D+ G +
Sbjct: 45  KVLLVEDDPAIAEPLARALGREGYEVSAQTTG--GAALQQVGGCDIVILDLGLPDMDGLD 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL SGADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 VT D  +      VEV  HR       + LT KE+ ++ +L     + +++E  
Sbjct: 163 E-----VTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQV 217

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++        K +D+ +  LR+KL + A    YI TV G G+
Sbjct: 218 MREVWGSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGF 262


>gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  LA      L+   + V V   GE G       E+  I+LD  L  + G 
Sbjct: 1   MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + P+ +++   +  DKV GL +GADDY+ KP +  EL+ARIRA++RR  
Sbjct: 61  GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++     V    H + LT  E+ ++EL        L++++ ++HL+D
Sbjct: 121 ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D P  + +   I  LR+KL+ A   K +IET+ G GY
Sbjct: 181 LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGY 219


>gi|119386003|ref|YP_917058.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119376598|gb|ABL71362.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 219

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  L  ++   + +   +V +VT L     +      +D I+LDL L D  G
Sbjct: 1   MRILLIEDDTVLGAAVRDQIAAGGQSVDWVTRLDAA-GDAMAGAGYDLILLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              LR+LR     TPV IL+ +  I D++ GL +GADDY+ KPF+  EL ARI ++ RR 
Sbjct: 60  ITFLRSLRAGGNVTPVIILTALDQISDRIEGLNAGADDYLVKPFDLAELSARIGSVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   +IV G L+V+L  +++   G  + LT +E+ + E    R    L+K      LY
Sbjct: 120 SGNPNPIIVHGALAVDLALRSIRRDGRPVQLTAREWALFEAFLTRPGQLLSKAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V + +LRKKL     G   IET  G GY L
Sbjct: 180 AFDTEVESNTIEVHVSRLRKKL-----GAAVIETERGLGYRL 216


>gi|46201698|ref|ZP_00208213.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA  I   LKS  F   V     D I   +   + A ILDLGL D  G 
Sbjct: 1   MRILLVEDNDRLAEFISGALKSAGFVPDVFGNKADAIAAFESATYQAAILDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++RA R      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RAI+RR  
Sbjct: 61  DIIRAQRAKSAPCPMMVLTARDGVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L+ +   + V V G  I +  +E +M+E L  R    ++K      LY 
Sbjct: 121 AALSVELSLSNLTFDTTGREVRVDGTLISMPRREMEMLEHLLRRAGKVVSKRSLEEGLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D+     ++V + +LRK+L    G +  + T+ G GY+L + A 
Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQ-TGARLTVHTLRGIGYMLADGAP 225


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 132/238 (55%), Gaps = 20/238 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +E  L  E + V  +  G+   +L     FD IILDL L  + G +
Sbjct: 3   KVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K++TP+ +L+      +K+ GL+ GADDY++KPF+  E+VAR++AI+RRSR 
Sbjct: 63  VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122

Query: 121 -------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
                              G  +S+I  GD+++N    +V   G  + +T KE++++  L
Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + R +  +++E+ L+ ++D       +++DV I  LR+K+        YI TV G GY
Sbjct: 183 AERVDRIVSREILLSKIWDFDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGY 240


>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +++  L++E F V +   GE+G+ L   +++D I+LD+ L  + G+
Sbjct: 1   MRVLVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A   TP+ +L+      D+   L +GADD++SKPF+   LVAR+RA+VRR+ 
Sbjct: 61  RVCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL+++   +T    G  + LT +E+ ++E L+      ++K   L  ++D
Sbjct: 121 RRLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I++V I  LR+K+ +A   +  + TV G GY L
Sbjct: 181 AAFDGDPNIVEVHISALRRKI-DAPFARTSVGTVRGAGYRL 220


>gi|229049779|ref|ZP_04194336.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229112534|ref|ZP_04242071.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670914|gb|EEL26221.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228722692|gb|EEL74080.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 220

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E + +       +G+ +    ++D IILD     IPG E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSIPGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  + Q
Sbjct: 61  QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119

Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMILNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220


>gi|222080841|ref|YP_002540204.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725520|gb|ACM28609.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 224

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+KAL+  +  +L+   + V     G           FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNKALSEGLFAILRGTGYAVDAVGDGASANAAAAAETFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E+KVRGL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNKAAVLILTARGTQEEKVRGLDLGADDYMIKPFDISEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   SL+  G++S++L+++T    G  I +  +E  ++E L +R    + KE  +  L  
Sbjct: 121 GLRASLVAYGNVSLDLNSRTFSANGVPIDIPARELGLLETLFMRAGRVVAKEAIIQSLAA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+L  A  G   + T  G GY L
Sbjct: 181 FDDDLSANAIEQYVSRLRKRL--APHGLT-VRTARGIGYYL 218


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I+L L SE + V V   G  G+ L +  + D  ILD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLTGIEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQEV 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + ++   DLS+N   + V      I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL    G K  I TV G GY LRE
Sbjct: 185 FMGDSNIIEVYVRYLRLKLEE-QGEKRLIHTVRGVGYALRE 224


>gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 235

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ ++  +   L+ + F+ ++ +   DG+   +  + D IILDL L D  G EV
Sbjct: 7   ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR    + P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRKLRTL-TAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLADP 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   Q L+    LS++  A+ V + GH  I L+ KE+ ++  L+   N   TK   L+
Sbjct: 126 KFKATTQQLLRFDSLSIDKTARKV-MAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E   I V+I +LR+KL  +    +YI TVWG GY
Sbjct: 185 QVWGYSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGY 227


>gi|316936295|ref|YP_004111277.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315604009|gb|ADU46544.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 221

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A  +   L    +   +   GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDSRIASELGRGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  GD++++     V V+G  + L+  EY++   L L +   +++     ++Y 
Sbjct: 121 GHASSVVSIGDVTLDERQMQVSVRGKPVALSPLEYRLASYLVLHRGRVVSQFELAENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V + ++R+K+     G + IET  G GY++
Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GVDLIETRRGFGYIV 216


>gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++R+LR  +I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G +++     GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRSKIDRGF-EHPMIHTVRGAGYVIRPD 227


>gi|163761469|ref|ZP_02168542.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
 gi|162281313|gb|EDQ31611.1| two component transcriptional regulator, winged helix family
           protein [Hoeflea phototrophica DFL-43]
          Length = 226

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  +   +   L++  + V     GE+   L     + A ILDLGL  + G 
Sbjct: 4   MRILLAEDDDRIRQDVSRALEAAGYVVDSEANGEEAWFLGDTETYAAAILDLGLPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV +L+   +  ++V G+ SGADDY+ KPF  EE++AR+RAI+RRS 
Sbjct: 64  AVLKRWRAAGRDFPVLVLTARGTWSERVEGIDSGADDYLPKPFRMEEMLARLRAIIRRSG 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  GD+ ++     + V G  + L+ +EY+++  L L K   + ++    HL  
Sbjct: 124 GLANPVVSVGDIELDTRQMRLSVAGVPVSLSPQEYRLVAYLMLNKGRVVPQQELSEHLQS 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E   ++V + ++R+KL       N I T  G GY++ E 
Sbjct: 184 VHFERESNAVEVLVGRVRRKLP-----ANLITTRRGFGYIVEEQ 222


>gi|325660888|ref|ZP_08149516.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472962|gb|EGC76172.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 228

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L  ++ + L S+ +   V   G DG+       +D +ILD  L ++ G 
Sbjct: 1   MRILLVEDDISLCKALMIHLNSQGYETDVCHNGTDGLSYALQNTYDVMILDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV + + M S++DK+ GL  GADDY++KPF+ EEL+ARIRA+ RR  
Sbjct: 61  TLLSAIRRKNIFTPVILATAMDSLQDKISGLDCGADDYLTKPFDAEELLARIRALARRPA 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +S I++ GDL  + +   +      + L+ KE  +IE L   K   L + + L++++
Sbjct: 121 LFKESPILSYGDLCFDPEKLELSTNEKTLSLSKKEGSLIEYLIKNKEQNLRRSLILSYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E E   +D +I  LR++L      +  I+T+ G GY L E
Sbjct: 181 GADAEVEEGNLDNYIYFLRRRL-RVLKSRVQIKTIHGVGYRLEE 223


>gi|91978862|ref|YP_571521.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91685318|gb|ABE41620.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 221

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD  +A  +   L    +       GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVAEDDSRIASDLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TILKRWREGGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  GD++++     V V+G    L+  EY++   L L +   +++      +Y 
Sbjct: 121 GHASSVVTIGDVTLDERQMQVTVRGQPAPLSPLEYRLASYLVLHRGRVVSQFELSESIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D  +   I+V + ++RKKL     G   IET  G GY++  +++
Sbjct: 181 QDDAHDSNAIEVLVGRVRKKL-----GPELIETRRGFGYIVAGDSR 221


>gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 267

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  ++G+E         FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADG---LVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   +    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 232

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 6   VKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDVNGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 66  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKIDNDFEPK-LIQTVRGVGYML 226


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD+ +   + + LK+E++ +     G+  +E  K Y + D IILD+ +  + G
Sbjct: 11  MKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLDG 70

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  +R      P+ +LS  S+  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 71  ISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRS 130

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                G A   I  G L++  ++  V    G  I LT  E+ ++ LL+   N   + +  
Sbjct: 131 TITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K++ A GG+  IETVWG GY
Sbjct: 191 FETVWQQESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGY 235


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 132/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQHS-NVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT++  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +    K  I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKVDDGFKTK-LIHTVRGVGYKCEERENED 231


>gi|291297399|ref|YP_003508797.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472358|gb|ADD29777.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 218

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L   ++  L  + F V   DL ED      L + + +D ++LDLGL D 
Sbjct: 1   MRLLLVEDHTGLGRLLQDTLSGQGFAV---DLAEDMASADGLLQSFPYDLVVLDLGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L++LR      PV IL+    + D+V+GL++GADDY+ KPF+ EELVARIRA++R
Sbjct: 58  DGIELLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKPFHPEELVARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG   +    G L ++++ K     G  +HL+G+EY ++E L+L      ++E  +  
Sbjct: 118 RARGEPTNRFKVGRLELDMELKRAWWDGQSVHLSGREYALLEFLALHAEGYFSREALMEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G    + + +D ++  LR+KLS  A     IETV   GY
Sbjct: 178 VWPGEAAIDPRTVDTYVRYLRRKLSPEA-----IETVRNLGY 214


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DAIILD+ +  + GF 
Sbjct: 11  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS R
Sbjct: 71  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GH +   S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 191 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 234


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 A  L  +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV + +LR+K+ +       + TVWG GY
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227


>gi|227534396|ref|ZP_03964445.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227188013|gb|EEI68080.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 231

 Score =  131 bits (330), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 133/230 (57%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+IEDD  L  SI   +++  F      L G DG+ L +   FDAIILD+ L ++ GF
Sbjct: 6   RILVIEDDPDLNESITDFIRA--FADPEAALNGADGLYLAEEGIFDAIILDIMLPELNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  +I TPV IL+   ++ DK+ G + G DDY++KPF++EEL+ R++A+++R  
Sbjct: 64  DVLKKLRAKQIKTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRI- 122

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH      +  G   V++ +  V +    + L GKE+ ++  L   + T +TK+   + L
Sbjct: 123 GHFFDDDGLTAGPFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +    E  V +++V++  LRKKL      +++I+T+   GY+ +E    E
Sbjct: 183 WGFDSETAVSVVEVYMSNLRKKLK-PLKVEHWIKTIRNVGYIFQEPEGSE 231


>gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 248

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LK   F V     G DG+      E+D I LD  L  + G  
Sbjct: 26  RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALTDEYDVITLDRMLPGVDGLT 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRSR 
Sbjct: 86  IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSRS 145

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +++ +  G L+++L  +     G  I L   EY+++E +      T+T+ M    +
Sbjct: 146 APAQSETSLTVGPLALDLIGRKASRDGVEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 206 WGYHFDPGTNLIDVHMGRLRKKI-DPPELAPMIRTVRGAGYIL 247


>gi|262164591|ref|ZP_06032329.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262026971|gb|EEY45638.1| DNA-binding response regulator [Vibrio mimicus VM223]
          Length = 236

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G       K  +F A+ILDL L D+ G 
Sbjct: 19  MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGAGVASALKTEQFTALILDLTLPDMDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 79  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  G+L+++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 139 GSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N I+ V G GY++
Sbjct: 199 WDEGSSDNAIEVHIHNLRKKLPD-----NLIKNVRGVGYMI 234


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  131 bits (330), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   RLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      D++ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +++  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDD  L  ++   + ++  +V +VT  D   D I    +   D I+LDL L D 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAIGSTSY---DLILLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ R
Sbjct: 58  RGITFLKGLRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K      
Sbjct: 118 RYSGNPNPILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   I+V + +LRKKL     G + IET  G GY L
Sbjct: 178 LYAFDAEVESNTIEVHVSRLRKKL-----GTSVIETERGMGYRL 216


>gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L      V     G+      +   +D +ILDLGL  + G 
Sbjct: 1   MRVLLVEDDRLIGSGVEDGLIEAGMTVDWACDGKHAQLALETTPYDLVILDLGLPRVSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R  +  TPV +++   ++ D+V GL +GADDY+ KPF+  ELVAR RA+VRRS+
Sbjct: 61  ELLDWIRKRRDHTPVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  GDL V+ +  TV     RI L+ +E  ++  L   +   L++    + LY 
Sbjct: 121 GRSTDTIEYGDLLVDPERLTVMRGSERIALSSRECALLVELLANQGRPLSRARLQDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+V I  LRKKL     G   I T+ G GYV+
Sbjct: 181 WNEEIESNAIEVHISNLRKKL-----GAQLIRTIRGVGYVV 216


>gi|154245480|ref|YP_001416438.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159565|gb|ABS66781.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +  +L+ +N+ V V   GE+         +D +ILDL L  I G 
Sbjct: 1   MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR +R  K + PV IL+  +S++ +V GL  GADDY++KPF+  EL ARIR  +RRS 
Sbjct: 61  QLLRRIRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G L+ + + +   + G  + LT +E+ ++E+L ++   T++K      ++ 
Sbjct: 121 RRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D  +   I++++ ++RKKL    G    I T+ G GY+L+ +A
Sbjct: 181 LDDLADPSAIEIYVHRVRKKLE---GSDVRIVTLRGLGYLLQHDA 222


>gi|330821407|ref|YP_004350269.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
 gi|327373402|gb|AEA64757.1| two component transcriptional regulator, winged helix family
           [Burkholderia gladioli BSR3]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ +LA S+   L +  F V     GE    L +  ++  +ILDLGL  + G 
Sbjct: 1   MRVLLVEDNPSLAQSLTDALAAARFAVDHMADGEAADHLLRTQDYALVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV IL+   S+ED+VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNAVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH Q+ +  G L  +       + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 121 GHEQTRVACGPLEFDSVDGGFRLAGEPLALTPRERAVLEVLILRNGRAINKEALSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LR+KL    G    I T+ G GY+L
Sbjct: 181 IDESVNADAIEIYVYRLRRKLE---GRGVAIVTLRGLGYLL 218


>gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 265

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  + G+E         FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED +E  K  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +       H +S++  GDL+VN D + V V+G    LT KE+ ++ELL   K   L+  
Sbjct: 120 FKKYNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGY 226


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|207738979|ref|YP_002257372.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|300697058|ref|YP_003747719.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
 gi|206592350|emb|CAQ59256.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|299073782|emb|CBJ53303.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 1   MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+R
Sbjct: 58  DGWQVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 117 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224


>gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR
 gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EV+R LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + ++
Sbjct: 121 SLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +    K  + T  G GY+L   A+DE
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFEVK-LLHTCRGMGYML--EAQDE 226


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED I+  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+  
Sbjct: 120 FKKYNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ + + I + L++E F          G+ L +  E D IILD+ +  + G E
Sbjct: 4   RILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K + P+ +LS  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RR + 
Sbjct: 64  AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + Q     +I  GDL +N   + V V+G  I LT KE+ ++ELL+  K T ++       
Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++          + V I K+R+K+ +      YI+T+WG GY
Sbjct: 183 VWQADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGY 224


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V V + GE G+      EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRGQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S++   D      L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGY 226


>gi|159037188|ref|YP_001536441.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916023|gb|ABV97450.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 218

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 133/221 (60%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA +++  L++E F V V   G  G+E  +  ++DA+ILD+ L  + G+
Sbjct: 1   MRLLVVEDEARLAAALQRGLQAEGFVVDVASTGPAGLEAARHGDYDAMILDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  +   PV +LS      D+  GL  GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  EVVRQLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++   + V   G  + LTG+EY +++ L  R +T ++K   L+H++D
Sbjct: 121 PERPAVLAVGDLRLDPARRRVTRDGAEVALTGREYALLDYLMRRPDTVVSKVELLDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V++  LR+KL     G++ +ETV G GY L
Sbjct: 181 ASVETAPNAVEVYVGYLRRKL-----GRDRLETVRGAGYRL 216


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 8/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +   + L L+ E F V     G++ ++    ++ D IILDL L +I G E+
Sbjct: 4   ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDGMEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R   +  P+ +L+      DK+ GL+ GADDY+ KPF+  E+VAR++A++RRS G 
Sbjct: 64  AKEIRKTSL-VPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSGI 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A S+I  G L ++ +A+ V+V G  + LT  E+ ++  L   +   L++E  L ++
Sbjct: 123 PEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLANV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +D  + +LR+KL  AA   +YI+TVWG GY
Sbjct: 183 WGYDYFGEARTVDTHVTRLREKLQEAA---SYIKTVWGVGY 220


>gi|33595087|ref|NP_882730.1| transcriptional regulatory protein [Bordetella parapertussis 12822]
 gi|33565164|emb|CAE35960.1| transcriptional regulatory protein [Bordetella parapertussis]
          Length = 237

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 129/230 (56%), Gaps = 3/230 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFEV 62
           LLIEDD+A A  +   L      V V+  G  G+E     ++D IILD  L  ++ G  +
Sbjct: 5   LLIEDDQANARYLANGLTELGHMVTVSGDGASGLENAMKDQWDIIILDRMLPNNVDGLSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR     TPV +LS +S+++D+V GL++G DDY+ KPF+  ELVAR+ A+VRR+R  
Sbjct: 65  LSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPD 124

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   DLSVN+  + V+  G  I L  +E++++  L L  +  +T+ M L  ++  
Sbjct: 125 PDVKELRIADLSVNVATQKVQRAGRPISLQPQEFRLLVYLMLHAHRIVTRTMLLETIWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +P+  +IDV + +LR+K+ +A+     I T+ G GY L +    +  E
Sbjct: 185 SFDPQSNVIDVQVSRLRRKI-DASCATPLIHTIRGAGYTLSDKQGSDNME 233


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DAIILD+ +  + GF 
Sbjct: 13  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS G
Sbjct: 73  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q    S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 193 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 236


>gi|19746167|ref|NP_607303.1| response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910410|ref|NP_664678.1| putative DNA-binding response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28895986|ref|NP_802336.1| response regulator [Streptococcus pyogenes SSI-1]
 gi|50914283|ref|YP_060255.1| CiaR [Streptococcus pyogenes MGAS10394]
 gi|56807753|ref|ZP_00365614.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903585|ref|YP_280388.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS6180]
 gi|94988681|ref|YP_596782.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS9429]
 gi|94990571|ref|YP_598671.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10270]
 gi|94992504|ref|YP_600603.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS2096]
 gi|94994493|ref|YP_602591.1| CiaR family transcriptional regulator [Streptococcus pyogenes
           MGAS10750]
 gi|139473693|ref|YP_001128409.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209559503|ref|YP_002285975.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           NZ131]
 gi|306827286|ref|ZP_07460573.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|19748346|gb|AAL97802.1| putative response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904608|gb|AAM79481.1| putative DNA-binding response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28811236|dbj|BAC64169.1| putative response regulator [Streptococcus pyogenes SSI-1]
 gi|50903357|gb|AAT87072.1| CiaR [Streptococcus pyogenes MGAS10394]
 gi|71802680|gb|AAX72033.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS6180]
 gi|94542189|gb|ABF32238.1| transcriptional regulatory protein [Streptococcus pyogenes
           MGAS9429]
 gi|94544079|gb|ABF34127.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10270]
 gi|94546012|gb|ABF36059.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS2096]
 gi|94548001|gb|ABF38047.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           MGAS10750]
 gi|134271940|emb|CAM30178.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540704|gb|ACI61280.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes
           NZ131]
 gi|304430433|gb|EFM33455.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I  PV I++    ++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I  G+L V+L  K V+V+G  + L GKE+ ++  L   +N  L K    + L+ 
Sbjct: 121 KFADKNISFGNLVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V+I K+RKKL       N ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYISKIRKKLKGTR-FVNRLQTLRSVGYILKNN 223


>gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD   A +++  LK       +   G+ G++  K    D IILD  +  + G 
Sbjct: 1   MKVLIVEDDNEAATNMQRGLKEAGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR      PV  LS +  +ED+V GL++GADDY+ KP+   ELVAR+ A+ RR  
Sbjct: 61  TMLQQLRSEGTDVPVLFLSALGELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKD 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  +++  GDL +NL ++ V+ Q   I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 KDAVDTVLRVGDLEMNLISRVVKRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P+  +IDV I +LR KL +    +  + TV G GY L+
Sbjct: 181 AYHFDPQTNVIDVHISRLRSKL-DKDFDRPMLHTVRGEGYQLK 222


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           +   DL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 132 AAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 239


>gi|310826554|ref|YP_003958911.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738288|gb|ADO35948.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 138/234 (58%), Gaps = 12/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+ +LA ++  +L+    N  + D+  DGIE   L +   +D I+LD+ L  +
Sbjct: 1   MRVLLVEDEVSLATALGKILEK---NKILVDVVHDGIEGKLLSENDVYDVIVLDIMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L+++R    + PV +L+   S  DKV+GL  GADDY+ KPF  EEL+ARIRA+ R
Sbjct: 58  SGLDILKSIRDRGKNVPVLLLTAKDSTADKVKGLDMGADDYLVKPFVTEELLARIRALGR 117

Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     Q   +T  DLS+N+++  + + G  I LT KE Q++E+       T++KE  L+
Sbjct: 118 RPWEVYQDNAITFSDLSLNINSGELLIGGAPIKLTSKEAQLLEMFIRNPGMTISKEQILD 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228
            ++          +++++  LRKKL  +   +  I+T+ G GYVL+E  NA+ +
Sbjct: 178 RIWGIESMAMENSVEIYVHYLRKKLKKS---RTVIKTIRGLGYVLKEEDNAQPQ 228


>gi|315497608|ref|YP_004086412.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415620|gb|ADU12261.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+   A  +   L  E + V        G+      +   IILD  L +  G  V
Sbjct: 6   ILLIEDEPEGAAIVGEALTREGYEVVWRATASAGLSEAGLGQHHLIILDRMLGNTDGLNV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A I+TP+ +LS ++  E+++ GL SGADDY+ KPF  +EL+AR+RA++RRS+  
Sbjct: 66  LTTLREAGITTPILVLSALARSENRIDGLDSGADDYLGKPFEPKELLARVRALIRRSQNR 125

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S +++ GDL +++ ++T    G  + L+ KE+++++LL       +T++M L  ++  
Sbjct: 126 MHSAILIYGDLELHVKSRTAHRAGRHLALSPKEFEILKLLMEHAGDVVTRDMLLQKVWRL 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P+  +IDV + +LR +L +    +  +ETV G G+ L
Sbjct: 186 NFDPQTNVIDVNMSRLRNRLEDGF-EQPVLETVRGIGFRL 224


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|319953318|ref|YP_004164585.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421978|gb|ADV49087.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  L  S+   L  +          E+ +     YE+D +ILD+ L    G 
Sbjct: 1   MKILIAEDEIELQKSMATYLSQDGNVCETASDHEEALYKLDVYEYDIVILDINLVTGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ L+    +T   I+S  SS++DK+ GL  GADDY+ KPF+  EL +RI+AI+RR +
Sbjct: 61  EVLKVLKQQDRNTATIIISANSSLDDKLEGLDLGADDYLIKPFHLAELNSRIKAILRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   ++SV+  AKTV V+G  + LT KEY +I      KN  L+KE+   HL+ 
Sbjct: 121 FGGTETIEFNEISVDTRAKTVFVEGRALILTRKEYDLILFFITNKNRVLSKEIIAEHLWG 180

Query: 181 GRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +       I V I  LRKKL+    G  YI+T +G GY   E
Sbjct: 181 DHSDLIDNYDFIYVHINNLRKKLTEV--GAKYIKTAYGSGYKFME 223


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD +++  ++  L  E F V +   GE+G+ L +   +DAI+LD+ L  + G +
Sbjct: 3   HILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  +   PV ++S      DK  GL  GADDYI+KPF+  EL ARI+A +RR+  
Sbjct: 63  FLKMIR-EQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++      Q ++   +L+V+++  +V+  G  + LT  E++M+ L         TKE   
Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 84/231 (36%), Positives = 130/231 (56%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A ++++ L+ E + V V   G+ G+E       D I+LD+ L  + G EV
Sbjct: 5   ILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVMLPGLNGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI------RAIV 116
           LR +R   I  P+ +L+   +  DKV GL  GA+DYI+KPF  EE++AR+      RAIV
Sbjct: 65  LRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHRAIV 124

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +         +   DLSVNL+ + V  +  +I LT KEY ++  L   KN  L+++  L 
Sbjct: 125 QDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRDNILL 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++    E E  ++DVFI  LRKKL       + I+T+ G GYV+R++  +
Sbjct: 185 TVWGYDYEGETNVVDVFIGHLRKKLEEDTTS-SLIQTIRGVGYVIRKDQHE 234


>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +   I++  +   +++     GEDGI   +    D +ILD+ L  I GF 
Sbjct: 3   QILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILPGIDGFN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR       + +L+  +   D++ GL+ GADDY+ KPFN  EL+ R  AI++R  G
Sbjct: 63  VCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRLHG 122

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++Q+     + +G   +   A+ V   G  I LT KEY ++E L    N  ++K+  L+ 
Sbjct: 123 NSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLLDI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + + K +DV + +LRKK+ +      YIETVWG GY  +E
Sbjct: 183 VWGYEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYRWKE 228


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 A  L  +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV + +LR+K+ +       + TVWG GY
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227


>gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103]
 gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 223

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G +      +DA++LDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  GD+ +      VE  G  I L  +E  ++EL     +  LT+      LY 
Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E     ++V I  LRKKL N      +I T+ G GY L E+  D
Sbjct: 181 WDTEVSSNAVEVHIHHLRKKLGN-----RFIRTIHGVGYTLGESECD 222


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|210610878|ref|ZP_03288631.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
 gi|210152273|gb|EEA83280.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L+ ++  +L+  N++V     GE+ +E      +D +ILD+ +  + G 
Sbjct: 1   MRLLLAEDEKPLSKALTAILERNNYSVDAVYDGEEALEYLDADNYDGVILDIMMPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+  S ++DKV GL +GA+DY++KPF+ +EL+ARIRA+ R   
Sbjct: 61  TVLKTIRNRGNLIPVLLLTAKSEVDDKVAGLDAGANDYLAKPFHSKELLARIRAMTRTQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S +  G+ +++     +        L  KE+QM+EL+    +  ++ E F+  ++ 
Sbjct: 121 AQADSKLQIGNGTLDRATFELSTPAGSFRLANKEFQMLELMMSNPSHLISAERFMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E EV ++ V+I  LRKKL+ A      I+     GY L E
Sbjct: 181 YDSEAEVNVVWVYISYLRKKLT-ALHANIQIKATRNVGYSLEE 222


>gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 128/219 (58%), Gaps = 6/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +E  L+S  F   V   G+  ++      FD ++LD+GL    GF 
Sbjct: 3   RILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR ++++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R  +R
Sbjct: 63  VLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++ +GDL ++L  +   V G  + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   I+DV++  LRKKL     G   +ETV G GY
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAERLETVRGMGY 216


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVR-AKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 -----HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 A  L  +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV + +LR+K+ +       + TVWG GY
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGY 227


>gi|167033487|ref|YP_001668718.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859975|gb|ABY98382.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 233

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  I G ++
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGIDGLQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 124 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
 gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G+    L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGQAADHLLHTETYALAVLDINMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q L   GDL+ + D     +Q   + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVQELQQLGDLAFH-DEGYFLLQAQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSNVRITTLRGLGYVL 217


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+V+    G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 20  SLERGLRLSGFDVFTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 79

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR RG   +     I  G
Sbjct: 80  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSTATFSSETITVG 138

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++
Sbjct: 139 PLEVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 198

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           DVFI  LR+KL  A G    + TV G G+VLR+ 
Sbjct: 199 DVFIGYLRRKL-EANGAPRLLHTVRGVGFVLRQQ 231


>gi|330818201|ref|YP_004361906.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370594|gb|AEA61950.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 247

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRILTVRGLGYCL 218


>gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180]
          Length = 227

 Score =  131 bits (329), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY  KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++ K  E+D ++LDL L  + G  
Sbjct: 4   QVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A +     ++  GDL ++ +++ V + G  I+LT KE+ ++ELL        ++E  L+
Sbjct: 123 PAAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 TVWGYEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFQ 228


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +  +V     GE+ ++L +   +D I+LD+ L    GF+
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 64  VCQQIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+     +I+  ++ ++ +++ V ++   I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RDSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G + P + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVW-GYEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYFR 228


>gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 225

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 131/221 (59%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  L+   ++V V + G DG+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MRILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + +TPV  L+    + D+VRGL+ G DDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLKVLRATR-TTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++++ + V     RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I+TV G GYV+
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDDFPVK-LIQTVRGVGYVI 219


>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 247

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  ++    ++ D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + 
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               G+     V+  DL++NL   +V   G +I +  KE +++  L+   N   T+E  L
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGY 226


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   +   L  E F V V   G   +E+ + +  D IILDL L  + GF V
Sbjct: 4   VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              LR   +    PV +LS   + EDKVRGL  GADDY++KPF+  EL AR++A +RR +
Sbjct: 64  CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQ 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             A+   +V G L ++ +   V  + H  +L  KE++++  L+       ++E  L+ + 
Sbjct: 124 SQAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIW 183

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            YD    P  + +DV +  +R+KL    G    IETV G GY  RE A+
Sbjct: 184 GYDYLGGP--RTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRFREPAQ 230


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +EL L  E + V     G  G++L      D I+LD+ L  + G E
Sbjct: 4   KILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R    + P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  ++R   
Sbjct: 64  VLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRKST 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R     L + G +S++ D   V V G  + LT +E++++  L   KN  + +E  +N +
Sbjct: 124 DRQETHKLEIHG-VSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  IIDV+I  LR K+ +  G K  I TV G GYV+RE+
Sbjct: 183 CGYEYVGETNIIDVYIRYLRTKIDDRFGIK-LITTVRGVGYVIRES 227


>gi|156933148|ref|YP_001437064.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531402|gb|ABU76228.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L +  F V     G     L +   +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALANTGFAVDCVGDGLAADHLLQNERYAVAVLDIEMPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   ++ D+V+GL  GADDY+ KPF   EL AR+RA+VRRS 
Sbjct: 61  EVLSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q     G+L+ + D    E+QG  + LT +E+ ++ +L  R+   +T++     ++ 
Sbjct: 121 GQVQEAQRLGELTFH-DEGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKL--SNAAGGKNYIETVWGRGYVL 221
             D+   + I+++I +LRKKL  SN       I T+ G GYVL
Sbjct: 180 LSDDVSPESIEIYIHRLRKKLLASNVQ-----ITTLRGLGYVL 217


>gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2]
 gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ LA  +   L+ E ++       +  +      E D IILDLGL D+ G 
Sbjct: 1   MRVLIVEDDQLLAQGLLHTLRHEGYSADHCATAKSALFAIDMAEADLIILDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R    + PV +L+     +DK++GL  GADDY++KPF   EL+AR+R + RR  
Sbjct: 61  ALLKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S +  GD+++NL A TV   G  + L  KEY +++ L        ++E     LY 
Sbjct: 121 KFASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  LRKKL      + +I+TV G GY++
Sbjct: 181 WGEEVSSNAVEVHIHHLRKKLP-----EGFIKTVRGIGYIV 216


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L + G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDIAG-LSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  R E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 129/224 (57%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L  +   V     GE+ + + K   +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQAIREFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSP 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S+I  GD+ ++ D++ + +  + I+LT +E++++E+L   +N   ++E  L 
Sbjct: 123 ERAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLK 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G D P +V+ +DV + +LR+K+        Y+ T WG GY
Sbjct: 183 IVW-GEDYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGY 225


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I+  +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T17]
 gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
 gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
          Length = 236

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           LI     LA S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ 
Sbjct: 16  LIAHSDVLA-SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVT 74

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
           ALR      PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A 
Sbjct: 75  ALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTAT 134

Query: 125 S---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           S    I  G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++  
Sbjct: 135 SSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGY 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  ++DVFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 195 DFAADTNVVDVFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 234


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 134/232 (57%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++  ++L L+ E +   V   G+D +   +   +D ++LD+ +  + G E
Sbjct: 4   RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R A+  TP+ +L+    + DKV GL  GA+DYI+KPF  EEL+AR+R  +R+   
Sbjct: 64  VLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQ 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q+L V  DL V+L A  V   G +I LT +E+ ++  L   KN  LT+E  +  +
Sbjct: 124 AANDNQTLSV-ADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           +      +  ++DV+I  LR+K+      KN+    I+TV G GY ++E+ +
Sbjct: 183 WGYDYFGDTNVVDVYIRYLRQKVD-----KNFEIPIIQTVRGVGYTIKEDKQ 229


>gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 235

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 126/227 (55%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           +LLI+DD+AL   ++  L ++ + V V   GE G+   K  + FD IILD+ L  + GFE
Sbjct: 6   LLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR   + TPV +L+      D++ GL+ GADDY++KPFN  EL AR++AIVRR   
Sbjct: 66  VLKRLRSTHV-TPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVDI 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    Q++I  GD+ +N+ A+TV    H + LTG E+ ++ LL       + K+ 
Sbjct: 125 QAGLQSDKQKQNMIEIGDVQLNIAAQTVACNSHEVELTGTEFAVLRLLMSSSPDLVPKQA 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +   +     + ID+ +  LRKKL N    +  I+T  G GYV
Sbjct: 185 ISEQVLGRKLAAFDRSIDMHVSNLRKKL-NMFSEQEKIKTHRGVGYV 230


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 123/218 (56%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 40  RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMNGID 99

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R ++   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR+  
Sbjct: 100 VCKAIR-SESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEA 158

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V  +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 159 EPAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 218

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGY 256


>gi|167841324|ref|ZP_02468008.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia thailandensis
           MSMB43]
          Length = 231

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GE+G  +   Y++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEAKVVDYLKSGLADEGWVVDAAADGEEGAWMAVEYDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  ELV R+RA+ RR+R
Sbjct: 61  GVLRSLRAHK-DTPVIMLTARDRVDDRVRGLRDGADDYLTKPFSFLELVERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L ++     G R+ LT +E+Q++ +L+ R+   L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL E A D+
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEERADDD 226


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 126/219 (57%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++V +   G DG+ L   ++FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +  TPV  L+    I D+V+GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLR-KETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H +  +   DL +++  + V   G+RI LT KE+ +++L +      L++ +  + ++D
Sbjct: 120 IHEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV + +LR K+ +    K  I +V G GY
Sbjct: 180 MNFDSDTNVVDVAVRRLRAKIDDPFPLK-LIHSVRGIGY 217


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A   +  L+  NF V +   G+ G+E  K   ++ IILDL L +I GFE
Sbjct: 3   KILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------- 114
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A       
Sbjct: 63  ICKQIRKIK-NTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +V  S  +    I    L++N  ++ V V G     T KE+ ++  L+   +   +KE  
Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++      E+  + V I K+R+K+        YIETVWG GY  R
Sbjct: 182 FDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFR 229


>gi|83748410|ref|ZP_00945433.1| CzcR [Ralstonia solanacearum UW551]
 gi|83724926|gb|EAP72081.1| CzcR [Ralstonia solanacearum UW551]
          Length = 248

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 25  MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 81

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+R
Sbjct: 82  DGWQVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 140

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 141 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 201 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 248


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  IEL L  E + V     G DG ++ K  ++D I+LD+ L  + G E
Sbjct: 4   KILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR +    PV +L+      DKV GL  GADDY++KPF  EEL+ARIR  ++R   
Sbjct: 64  ILRRLRESS-DIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +  +LI   +LS++L+  +V  +   I LT KE+ ++  L   KN  L+++  L  
Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  ++DV+I  LR K+ +    K YI TV G GYV+++
Sbjct: 183 VWGFDYFGDTNVVDVYIRYLRSKIDDKYKEK-YIYTVRGVGYVVKD 227


>gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 234

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD +++  ++  L+ E ++V     GE+   L +   +D ++LDL L    G +
Sbjct: 5   KILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGID 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R   +  PV I+S   S  DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 65  CLQWIRTKSV-VPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +AQ+        I   +L V L + TV+ +G  I LT KE+Q+++L         TKE  
Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++     +  +I+V I +LR+K+ +      YI+T+WG GY + E
Sbjct: 184 YRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V   G  G+   +    D +ILD  L  I G E+
Sbjct: 5   ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGISGPEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+    + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQTE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +++   DLS+N   + V  +G R I LT KE+ ++E L       LT+E  L  ++  
Sbjct: 125 DPNILQFADLSLNHSTREV-YRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR KL  A      ++TV G GYVLR+
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLE-ANNESRLVQTVRGVGYVLRD 224


>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 237

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|332530381|ref|ZP_08406326.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040192|gb|EGI76573.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 225

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  ++   L+ +   V     G       +   +DA++LDLGL    G 
Sbjct: 1   MRLLILEDDPQLGEALSGGLRQQGHVVDWFTSGPPADAALRGTAYDALVLDLGLPGTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   ++ PV +L+   ++E ++ GL  GADDY+ KP   +EL AR+RA++RR+ 
Sbjct: 61  VWLRRWRQGGLALPVLVLTARDTLEQRIEGLDLGADDYLIKPIALDELAARLRAMLRRAT 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q+  V GDL  +  +K V  Q   + LTG+E  ++E+L       L+K   L  LY
Sbjct: 121 GRATQAEWVHGDLRYDPASKQVHWQDKPVELTGREISLLEVLLKNPQRVLSKTQLLEQLY 180

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D G  EPE   ++V I  LR+K++        + TV G GY L
Sbjct: 181 DWGGGEPESNALEVHIHHLRRKIA-----PGVVRTVRGLGYAL 218


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   +   + +  DA+ILD+ L D+ G 
Sbjct: 20  VRVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 80  AVLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 139

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S +V GDL ++ D+  V      IHLT  E++++  L       L+K   L+ 
Sbjct: 140 TASVRSESTLVVGDLVLDEDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     +  +++++I  LRKK+   AG    I T  G GY+++  
Sbjct: 200 VWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 244


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L+  + + L+ E   V     G   +   + +  D ++LD+ L D+ G  
Sbjct: 28  RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS G
Sbjct: 88  VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRS-G 146

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ     S++  GDL ++ D+  V   G  +HLT  E++++  L       L+K   L+
Sbjct: 147 AAQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILD 206

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+KL    G    I T  G GY+++
Sbjct: 207 RVWSYDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLIK 252


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5
           str. 8401]
 gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
          Length = 227

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R +++R  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G+D + +L    +   +ILDL + ++ G
Sbjct: 16  MKILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMDG 75

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+R+++RRS
Sbjct: 76  MEVIKRIR-KDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRS 134

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G   +    ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 135 EGQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDI 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 195 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 239


>gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis H37Ra]
 gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA
 gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA
 gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
 gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
          Length = 233

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 141

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 202 VFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 231


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V +T  G+ G EL +   +D +ILD  L +  G 
Sbjct: 33  MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    + PV  L+   +++D+V+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 93  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + ++   +  GDL ++++ +    QG  I L+ KE Q+++         LT    + H
Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ G   PE  +I   I  LR+K+    G    I TV+G+GY
Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKI-ELGGESMLIHTVYGKGY 253


>gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 239

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++   DL ++L  + V     ++ LT  E+ ++E+        LT+E 
Sbjct: 132 AAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR+   +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRQGGAE 244


>gi|229153277|ref|ZP_04281455.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228629881|gb|EEK86532.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 225

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQKEINFFQFKDLFVDASSNVVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         ++D++I  +RKKL      + YI+T+ GRGY +
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +A  I   L  E +   V   GEDG+E    +    I+LDL L    GF 
Sbjct: 4   RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R ++ S P+ +L+   S  DKV GL+ GADDY++KPF   EL+ARI+A++RR   
Sbjct: 64  VCKEIR-SQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNL 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S    + ++   D+ +NL    V+ QG  I LT +E+Q+   L  R+   +++E
Sbjct: 123 SGQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +  ++      E + +DV I +LR+KL +  G  +YI T  G GY LR
Sbjct: 183 RMIEEVWGYDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYLR 232


>gi|323488492|ref|ZP_08093736.1| OmpR family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
 gi|323397709|gb|EGA90511.1| OmpR family DNA-binding response regulator [Planococcus donghaensis
           MPA1U2]
          Length = 224

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++LL EDD+ L   +  +LK +  +V  +VT+ GED I   +   +D +ILD  + +  
Sbjct: 1   MKVLLAEDDERLGELVVHLLKKKGASVVDWVTE-GEDAIAYAQASFYDVVILDWMMPNGD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R LR    S  V +L+   ++ D+V GL +GADDYI KPF  EEL AR+ A+ RR
Sbjct: 60  GVSVCRHLRAVGYSGAVLMLTAKGTVPDRVEGLDAGADDYIVKPFEIEELWARLNALTRR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R    +  ++ G+L +N  + T+  Q   I LT +E+Q+ ELL + +   LT+E+ L+ 
Sbjct: 120 TRTPIREETVMIGELLLNRTSHTLYYQEEEILLTPREFQLFELLVVNRGQVLTRELILDR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E  +K ID  +  LRKK+S  +  + +I+ V G GY
Sbjct: 180 IWGLDAEVSLKTIDATVKLLRKKISRTS-KEEFIKAVRGVGY 220


>gi|319764865|ref|YP_004128802.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827070|ref|YP_004390373.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119426|gb|ADV01915.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312442|gb|AEB86857.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRLHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+    IE++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGGTSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219


>gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 260

 Score =  131 bits (329), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
 gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + LK     V   D  ED  E   F      D  ++DLGL D 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKELGHQV---DAAEDAKEADYFLRESCPDIAMVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++  R  +I+ PV +L+   S ++KV+ L SGADDY++KPF+ EELVAR++A++R
Sbjct: 58  DGLSMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++      ++L  K   V G  + LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+       + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQFHAN-DVIVTVRGQGY 218


>gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104]
 gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium 104]
          Length = 233

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 141

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 202 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 231


>gi|228988340|ref|ZP_04148433.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771405|gb|EEM19878.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 222

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|15601853|ref|NP_233484.1| DNA-binding response regulator [Vibrio cholerae O1 biovar eltor
           str. N16961]
 gi|121728501|ref|ZP_01681525.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147672339|ref|YP_001214980.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153816730|ref|ZP_01969397.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153821227|ref|ZP_01973894.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153827796|ref|ZP_01980463.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227812668|ref|YP_002812678.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|254284724|ref|ZP_04959691.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254850261|ref|ZP_05239611.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|262158660|ref|ZP_06029774.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|298499864|ref|ZP_07009670.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9658551|gb|AAF96996.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121629219|gb|EAX61657.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|126512749|gb|EAZ75343.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126521286|gb|EAZ78509.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146314722|gb|ABQ19262.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148876641|gb|EDL74776.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|150425509|gb|EDN17285.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227011810|gb|ACP08021.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227015746|gb|ACP11955.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|254845966|gb|EET24380.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|262029540|gb|EEY48190.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|297541845|gb|EFH77896.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
          Length = 218

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 1   MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 61  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  G+L ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 121 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N ++ V G GY++
Sbjct: 181 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 216


>gi|325104913|ref|YP_004274567.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324973761|gb|ADY52745.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 224

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L+ SI   L  E++        +  IE  + Y++D I+LDL L    G 
Sbjct: 1   MKLLIIEDEVELSKSITKYLSDESYLCEQAYTYQAAIEKVELYDYDCILLDLMLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  L+  K +  V I+S   S++DK++GLQ GADDY+SKPF   EL ARI +++RR  
Sbjct: 61  EVLNILKKHKKNAGVIIISAKDSLDDKIKGLQIGADDYLSKPFFLPELAARIHSVIRRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   +L V++ +KTV+V    + LT KE+ ++  L   KN  +TK     HL  
Sbjct: 121 FENSNIITYEELEVDVISKTVKVNHIPVPLTRKEFDLLLFLMGNKNKVVTKTAIAEHLSG 180

Query: 181 GRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E       I   I  L++KL++ AG +NY++T++G GY
Sbjct: 181 DLAEMLDNYDFIYAHIKNLKRKLAD-AGCQNYLKTLYGNGY 220


>gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 263

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L+ E F   V   G + I + +  + D +ILD+GL  I G E
Sbjct: 32  RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  ++  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 92  VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                          V G LS+++ A+ V + G  I LT  E+ ++E LS R    L++ 
Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ + +G       ++DV I  LR+KL + A    +I TV G GY
Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGY 257


>gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 02_1987]
 gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T92]
 gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis EAS054]
 gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis GM 1503]
 gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis 210]
 gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis W-148]
 gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 236

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 25  SLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 85  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 144

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 205 VFIGYLRRKL-EAGGGPRLLHTVRGVGFVLR 234


>gi|325284131|ref|YP_004256672.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315940|gb|ADY27055.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPG 59
           MR+LL+EDD  +A      L    ++V     G+D +E     +F   +LD+ +  ++ G
Sbjct: 1   MRLLLLEDDARIAEPTRDALSEAGYDVTWVQTGDDALEAAVMGDFPLAVLDVMVPGELDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V   +R A + T +  L+  + +ED+VRGL  G D Y++KPF   EL+A +RA+ RR 
Sbjct: 61  FAVAGEMREAGLDTAILFLTARTEVEDRVRGLDIGGDAYLTKPFAMPELLATLRALTRRE 120

Query: 120 RGHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RG +  ++    G  +++  A+TV   G  + +TG+EY ++E L+L  +   T+E  L+ 
Sbjct: 121 RGQSAPVLQFAQGRGTLDTVARTVTWDGEEVAVTGREYALLEALTLSPDRWFTREDLLDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + E +I+DV++  +R+KL+  A     I +  GRGY
Sbjct: 181 VWGAEFDGEARIVDVYVRYVRRKLAPEA-----IRSERGRGY 217


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57
           M+IL+++D++A+  S+    +S +FN Y   L EDGI+  +  + +    +ILD+ +  +
Sbjct: 24  MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRM 80

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VR
Sbjct: 81  DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140

Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS   +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT
Sbjct: 141 RSAVESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   L  ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE A
Sbjct: 201 RAQILEEVW-GYDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 254


>gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 300

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 58  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 117

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 118 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 177

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 178 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 237

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++  LRKK+  +      I TV G GY L + A
Sbjct: 238 WGEEVSNNAIEVYVHGLRKKIEPSG---VRISTVRGLGYCLEKVA 279


>gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 223

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   LK   ++V     GE G+   +   +D +++D  +  + G 
Sbjct: 1   MRILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR     TPV  LS +  + D+V GL++GADDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  TVVETLRREGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L++  + V     G + +EL   +  D +ILDLGL D+ G +
Sbjct: 3   RVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ +LSG S   DKV  L +GADDY++KPF  +EL+AR+RA++RR++ 
Sbjct: 63  VIAGLR-GWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRRNQA 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD+ V+L A  V V+G  I LT  E+ ++E+L       +++   L  ++ 
Sbjct: 122 VDPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E     + +++ +LR+KL        Y  T  G GY
Sbjct: 182 PGYETAQGNLRLYVAQLRRKLEPDPSRPRYFRTEPGMGY 220


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
 gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
          Length = 227

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL ED+K +A +I  +LK E ++V   D   DG+      E   +D  ILD+ +  +
Sbjct: 1   MRILLAEDEKRMAAAIVALLKQEKYDV---DHMADGVSALLALESNMYDIAILDVMMPKM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV R  R   I+ P+ +L+  S ++DKV GL +GADDY++KPF+  EL+AR+RA+ R
Sbjct: 58  NGFEVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS     S++  GDLS++    T+     G  + L+ KE +++E +       +T++   
Sbjct: 118 RSSNFQDSVLHFGDLSLDTSTATITCNSSGQSVRLSEKELRILEYMIGSHGRIVTRDQLA 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++    + E   ++V++   RKKL+   G K  I+ V G GY LRE 
Sbjct: 178 IKIWGFESDAEYNNVEVYMSFTRKKLA-FVGSKVEIKAVRGLGYELREQ 225


>gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 253

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD+++A      L+   F V +   G+ G++     E+D I+LDL L  I GFE
Sbjct: 3   KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R  K  TPV ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VLRKVRAEK-DTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYER 121

Query: 119 -SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G   Q L+    L ++  A+ V      ++LTGKE+ ++  L+   N   TKE    
Sbjct: 122 LTGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++  + V I KLR+K+        YIET+WG GY
Sbjct: 182 RIWGMDSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGY 224


>gi|15673657|ref|NP_267831.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281492256|ref|YP_003354236.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|12724689|gb|AAK05773.1|AE006398_4 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281375927|gb|ADA65421.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis KF147]
 gi|326407140|gb|ADZ64211.1| Two-component system response regulator [Lactococcus lactis subsp.
           lactis CV56]
          Length = 225

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L+ S+   LKS      V D G +G+   +   +D I+LDL L +  GF
Sbjct: 5   IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR   + TPV I++   S++DK+ G   GADDY++KPF  +EL ARI+A+++R+ 
Sbjct: 64  EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 123

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +T G++ +NL  K+  V    + L GKE+ ++  L   +N  L KE   + ++
Sbjct: 124 KLEDSNGLTYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  V +++V++ K+RKKL +     N + T+   GY+LR
Sbjct: 184 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 225


>gi|39937875|ref|NP_950151.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|39651735|emb|CAE30257.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
          Length = 221

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A  +   L    +   +   GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDSRIASELARGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  G+++++     V V G  + L+  EY++   L L +   +++     ++Y 
Sbjct: 121 GHASSVVTIGEVTLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V + ++R+K+     G + IET  G GY++
Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GADLIETRRGFGYIV 216


>gi|113968625|ref|YP_732418.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049227|ref|YP_739777.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117918739|ref|YP_867931.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883309|gb|ABI37361.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890669|gb|ABI44720.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117611071|gb|ABK46525.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 225

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 16/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD   A +I+ ++K    +  N+     G  G+      ++D +ILD  L  +
Sbjct: 1   MKILLVEDD---ATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++
Sbjct: 58  DGLKLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQ 117

Query: 118 RSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R     QS+ +T DL V      L  + V + GH + L  KE+Q+++ L    N  +++ 
Sbjct: 118 R----GQSVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRT 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    ++D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 174 LLFEAVWDYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRLRQ 223


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+  L+ +N  V     GE+G+ L +    D IILD+ L  + G E
Sbjct: 3   KILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLE 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    ++  P+ ++S      D V GL+ GADDYI+KPF+  EL AR++A +RR+
Sbjct: 63  VCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRA 122

Query: 120 R-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         SLI  G L +NLD   V V+G  ++ T KE++++ +L        T+EM 
Sbjct: 123 QYDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREML 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++   +  + + +DV I  +R+K+    G   YI TV G GY   E+ K
Sbjct: 183 LEQVWGFDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKFSEDYK 234


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 132/238 (55%), Gaps = 10/238 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L +E + V V D G+ G E     +FD I+LDL L  + GFE
Sbjct: 4   RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   + TPV IL+  ++ E+ V+GL+SGADDYI+KPF   EL+AR+ A++RRS G
Sbjct: 64  IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S IV G L++  +   V + G  I L  KE++++  L+ +    +T++
Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K  + 
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKL-ELDPQSVHIDSIRGVGYKLVVNKKQASI 240


>gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 257

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  + G+E         FD +ILDLGL  +
Sbjct: 1   MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSIQTFDLLILDLGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 58  SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 118 RGAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 178 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 218


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 22/236 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  I L L  E +   +   G + ++L + Y  D ++LD+ L  + G++V
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    +TP+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RR    
Sbjct: 66  CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124

Query: 119 ---------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                          S  H  + +    L VN+   TV  +GH + +  KE +++  LS 
Sbjct: 125 ESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLSS 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R N   T+E  L+ L+      + + +DV I +LR+KL+N       I TVWG GY
Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGY 238


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G+EV
Sbjct: 4   ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGYEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++RR  
Sbjct: 64  LKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRRVE 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   +   L ++  L  
Sbjct: 124 SLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFILQR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 184 VWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
           monocytogenes L99]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 11  ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 71  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 130

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 131 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 191 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 233


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ ++   ++  L+   F V     G+  +E+ K  + D IILDL L  + G 
Sbjct: 2   IKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V + LR  + +TP+ +L+      DK+ GL+ GADDY++KPF+  E++AR++AI+RR  
Sbjct: 62  DVCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRRFQ 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + GH + L+  GD+ +  +   V  +  ++ LT KE++++  L+  +   LT++ 
Sbjct: 122 NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLTRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LN +++     + +I+DV +  LR+KL +      YI+TV G GY L
Sbjct: 182 LLNAVWNYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKL 229


>gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium
           abscessus]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 4/213 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +     +  DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFEVNTASDGAEALRCATEHRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  +S++D+V GL++GADDY++KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 82  VCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETITVGP 141

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V +  +   + G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 142 LEVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           VFI  LR+KL  A G    + TV G G+VLR  
Sbjct: 202 VFIGYLRRKL-EAGGAPRLLHTVRGVGFVLRSQ 233


>gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++ ALR A    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   + +  GDL ++L ++ V   G+ I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNGFDTKLKVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L
Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222


>gi|254490397|ref|ZP_05103586.1| heavy metal response regulator subfamily [Methylophaga thiooxidans
           DMS010]
 gi|224464530|gb|EEF80790.1| heavy metal response regulator subfamily [Methylophaga thiooxydans
           DMS010]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++     I   L    F V     G DG        FD IILD+ L DI G+
Sbjct: 1   MRLLVVEDERKAGEFIRQGLTEAGFLVTWMSNGLDGYHQAMTETFDVIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR A   TPV  L+   S+ D+V+GL+ GADDY+ KPF   EL+ARIR+++R  R
Sbjct: 61  RILKSLREAGNQTPVIFLTARDSVTDRVKGLELGADDYLVKPFAFVELLARIRSLLR--R 118

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G++ ++I      DL +++ ++ V   G +I L+ KE+ ++EL   R+   L + +  + 
Sbjct: 119 GNSTAIIEELKVADLVLDIPSRKVTRAGKKITLSQKEFLLLELFIRRQGEVLPRSIIASE 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   + +  +IDV + +LR K+ +    K  I TV G GY L + ++
Sbjct: 179 VWDMNFDSDTNVIDVAVRRLRAKIDDEFEQK-LIHTVRGMGYKLEDESE 226


>gi|89899315|ref|YP_521786.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344052|gb|ABD68255.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL EDD  L   +   L+   F V   D   DG+   +     ++ A +LDLGL   
Sbjct: 1   MRILLAEDDSMLGDGLRAGLRQLGFQV---DWVRDGLAAERELACGDYAAAVLDLGLPLK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VL+A+R +KI+TPV +L+   ++ D++RGL  GADDY+ KP +  EL AR+R++VR
Sbjct: 58  DGIDVLQAVRASKITTPVLVLTARDAVPDRIRGLDLGADDYVVKPVDLHELGARLRSLVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G  Q ++  G + +   A+ V +    + L+ +E+ ++ +L L  +  L++E     
Sbjct: 118 RAHGQMQDVLRCGAVLLEPSARRVSLNDEPVALSTREFDLLHVLMLNADRVLSREQLEQQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           LY    E E   I+V I  LR+KL       + I+TV G GY ++  +   + 
Sbjct: 178 LYSWGYEVESNAIEVHIHHLRRKLQ-----PDLIQTVRGIGYTVQRGSAPASA 225


>gi|49481122|ref|YP_039105.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332678|gb|AAT63324.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NLQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|15807647|ref|NP_295328.1| response regulator [Deinococcus radiodurans R1]
          Length = 243

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/242 (30%), Positives = 128/242 (52%), Gaps = 28/242 (11%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR L++ED+  +   +   L+   + V       +  EL   + FDA+++D+GL + P  
Sbjct: 1   MRFLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+++R LR A  ++PV  L+   S+ D++ GL +G DDY+ KPF+  E+ AR+RA+VRR
Sbjct: 61  GFDLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRR 120

Query: 119 SRGHAQSLIVTGD---------------------LSVNLDAKTVEVQGHRIHLTGKEYQM 157
            R  AQS     D                     L ++  ++ V   G R+ LT KE+ +
Sbjct: 121 GRAEAQSARSWRDCGWTGQAAPCSGAASGWRLARLRLDWTSRAVFRSGERVALTAKEFSL 180

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +E+L+       T++  ++ ++DGR + E  ++D ++  LR+KL     G   ++T+ G 
Sbjct: 181 LEVLASHPGRVYTRDELIDRVWDGRFDAESNVVDTYVRNLRRKL-----GDEVVQTMRGV 235

Query: 218 GY 219
           GY
Sbjct: 236 GY 237


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|312863367|ref|ZP_07723605.1| putative response regulator ArlR [Streptococcus vestibularis F0396]
 gi|322516994|ref|ZP_08069883.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311100903|gb|EFQ59108.1| putative response regulator ArlR [Streptococcus vestibularis F0396]
 gi|322124411|gb|EFX95908.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVFDFLDDFADVMQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  TVLKELREQGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  GD+ VNL   +  V    + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KFDQNTLSFGDVRVNLATNSTYVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL       N ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTDFATN-LQTLRSVGYILK 221


>gi|298291170|ref|YP_003693109.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927681|gb|ADH88490.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 219

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD  L  ++   +  +  +  +VT + +   +      +D I+LDL L D  G
Sbjct: 1   MRILLIEDDGVLGAAVRDQIVGDGHSADWVTRI-DAARDAMAGAAYDLILLDLMLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              LRALR A   TPV IL+ +  + D++ GL +GADDY+ KPF+ +EL ARI ++ RR 
Sbjct: 60  IVFLRALRAAGNVTPVIILTALDQVSDRIEGLTAGADDYLVKPFDLDELSARIGSVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   +I    L +++  ++V  +G  + LT +E+ ++E    R    L+K      LY
Sbjct: 120 SGNPNPIIRHHSLDIDIARRSVRREGRPVQLTAREWALLEAFLARPGQVLSKAQLEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E E   I+V + +LRKKL     G + IET  G GY L
Sbjct: 180 DFDAEVESNTIEVHVSRLRKKL-----GADLIETERGLGYRL 216


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D ++    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A         +  +   DL ++L  + V   G ++ LT  E+ ++E+        LT+E
Sbjct: 132 AAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245


>gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  +   L    F V +   G DG  +    ++D ++LD+ L D+ G+
Sbjct: 1   MKILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +QS  +   DL ++L  +     G +I LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 DMNFDSDSNAIDVAIRRLRAKIDDPFEPK-LIHTVRGMGYTL 221


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   D G  G+E+ +  E D I+LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225


>gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Pelagibaca bermudensis HTCC2601]
 gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseovarius sp. HTCC2601]
          Length = 219

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDD  L  ++   + ++  +V +VT  D   D +    +   D I+LDL L D 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAMAATSY---DLILLDLMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ R
Sbjct: 58  RGIGFLKGLRTRGDVTPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K      
Sbjct: 118 RYSGNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   I+V + +LRKKL +A      IET  G GY L
Sbjct: 178 LYAFDAEVESNTIEVHVSRLRKKLGSAT-----IETERGMGYRL 216


>gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  ++  L+ ++  V V   G+ G  +     +D I+LD+ L  + GF
Sbjct: 6   MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++++R  K  TPV +L+ M S++DK+ G ++GADDY+ KPF   EL+AR+RA+ +RS 
Sbjct: 66  DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   +++   DL ++L+ K       RI LT KE+ +++ L   +   +++      +
Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +    +IDV++  LRKK+      K  I TV G GY+L+E+
Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTK-LIHTVIGMGYMLKED 230


>gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 301]
 gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 2457T]
 gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri
           2002017]
 gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71]
 gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71]
 gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV +  LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKLLRGKIDNDFEPK-LIQTVRGVGYML 221


>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ L  SI   L+   + V     GE   EL     +D I+LD+ L  I GF
Sbjct: 1   MKLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINLPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R       V +L+  + I+D+V+GL  GA+DY+ KPF+ EEL ARIR+++RR +
Sbjct: 61  TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    +S ++ +KTV  +G  I LT KE  ++E L L +   +++E  L H++D
Sbjct: 121 LQEDTVLSAQGISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G        + V +  LR+KL  +  GKN I    G+GY++ E
Sbjct: 181 GDMNEFSNTVRVHVSALRRKLKESL-GKNIIRNEIGKGYIIDE 222


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F V V + GE+G++L     F+ ++LD+ +  + GF 
Sbjct: 3   KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+AR+RAI+RR+  
Sbjct: 63  MLARLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG +   +   DL +    +     G  + LT  E+ ++E L LR    +  +  L
Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECL-LRNPGQIVSKSQL 180

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + L  G+  EP  + ID+ +  LRKKL     G+   +TV GRGY+  E A
Sbjct: 181 SELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231


>gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 263

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L+ E F   V   G + I + +  + D +ILD+GL  I G E
Sbjct: 32  RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  ++  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 92  VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                          V G LS+++ A+ V + G  I LT  E+ ++E LS R    L++ 
Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ + +G       ++DV I  LR+KL + A    +I TV G GY
Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGY 257


>gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens
           CN-32]
 gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella putrefaciens CN-32]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR++ ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S      LS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 130/219 (59%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +   +E  L ++ ++    + GE G+ +    + D ++LD+ L  + G 
Sbjct: 1   MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ +   PV +L+    +E KV  L +GADDY++KPF  EEL+ARIRA+VRR+ 
Sbjct: 61  EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++ V   G ++ L+ +E+ ++E L       L+++  L+ ++D
Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++DV++  LR+KL +  G  + I TV G GY
Sbjct: 181 YAFDPGSNVVDVYVRYLRRKL-DRPGEPSLITTVRGAGY 218


>gi|310827285|ref|YP_003959642.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739019|gb|ADO36679.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL IED+  +  +++ + K +N +  V + GE+G+       +D I+LD+ L    G 
Sbjct: 1   MRILFIEDEVKITDALQELCKIQNIDCDVANDGEEGLLFALNPIYDVIVLDIMLPMKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R   I+TPV +L+   +++DKV+GL  GADDY+ KPF+ +EL ARIRA+ RR  
Sbjct: 61  EILKEVRDRDITTPVLMLTAKGTVDDKVKGLDLGADDYLIKPFSAKELFARIRALSRRPD 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  I++  D+S N     ++   +   L+ KE +++E+L  R N   T+E  L+ ++
Sbjct: 121 HEIKGEIISFEDVSFNTKKNMMQTPENEYKLSVKEAKILEMLLKRPNQVFTREQILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E     I++++  LRKKL+N       I+T+ G GY L
Sbjct: 181 GFDKEVNENNIEIYVHNLRKKLANTNVK---IDTIRGVGYTL 219


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   +  ++  L+   + V +   G +G+ L K  E+D I+LD+ L  I G+
Sbjct: 1   MRILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + +TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVLKTLRATQ-TTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL V++  + V+  G RI LT KE+ +++LL  R+   LT+    ++++D
Sbjct: 120 PRENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  +++V I +LR K+ +    K  I TV G GYV
Sbjct: 180 MNFDSDTNVVEVAIRRLRGKVDDDFPVK-LIHTVRGVGYV 218


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL ++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 1   MRILAVDDDRAVRESLR---RSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+ARIRA++R
Sbjct: 58  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    +  V    S + LD  T EV +G R I LT  E+ ++E+L       LT+   
Sbjct: 118 RTKPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 228


>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
 gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
 gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
 gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
 gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
 gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
 gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227


>gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 122/217 (56%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK L+  +   L++E + V   + GE  ++  + Y    ++LD+ L D+ GF V
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVESGERAVQFFERYGARLVVLDINLPDMNGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR     TP+ I+S  +  EDK+ GL  GADDYI KP++ + L+A+I+ I +R   +
Sbjct: 64  CSKLR-ENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRR--Y 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S++    + +NL  KT E+ G  + L+ KE+ ++ LL   +   L KE   + ++   
Sbjct: 121 QRSMLSASGVVLNLANKTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E++ + V I +LR+KL +       + TVWG GY
Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNARRLLTVWGVGY 217


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E ++V     GE+ ++L    + D  I+D+ L  + GFE
Sbjct: 17  KILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGFE 76

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R  +   +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 77  LVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 136

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I   DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 137 SAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 196

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 197 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 251


>gi|167624826|ref|YP_001675120.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354848|gb|ABZ77461.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           +R+LLIEDD+ LA ++ +LM  ++    +V++ G  G+ L +   +D +++D+GL  + G
Sbjct: 2   IRVLLIEDDRDLAETLLQLMELAQMLPDHVSN-GIAGLTLARSNSYDVLVIDVGLPKLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V + LR + I TP+  L+  SSI++K+ G  SG DDY++KPF+  EL+ARI A+  R 
Sbjct: 61  YSVCKQLRASGIDTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H + L + G L +N + + V  QG ++ LT   Y ++E+L       ++++   N L+
Sbjct: 121 SSHVKRLEIAG-LIMNCEQQQVSYQGQKLELTPACYTLLEVLMRASPEIVSRQSLENKLW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G + P   ++   I  LR+ L+     +  + T  GRG+ LR +
Sbjct: 180 -GDEPPSSNVLKAHIYYLRRALTQVQLAE-MLYTSTGRGWALRPS 222


>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ +   I+  L    F+V     G++G+       +DA++LDL L  + G 
Sbjct: 1   MRILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G + +   +  V + G  + L  +E  ++EL  +     LT+      LY 
Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++     ++V I  LRKKL     G  +I T+ G GY L E
Sbjct: 181 WDEDVSSNAVEVHIHHLRKKL-----GSQFIRTIHGVGYTLGE 218


>gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1]
 gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1]
          Length = 208

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 119/201 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              E    IIDV++  LRKKL
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKL 201


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS  + +G LSVN   +D  A+   + G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKFAEAGERE 238


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|210632475|ref|ZP_03297403.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
 gi|210159570|gb|EEA90541.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279]
          Length = 226

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA ++  +L+   +   V   G DG+ +     +D ++LD+ L D+ G 
Sbjct: 1   MRVLLVEDTPRLAEAVAEILRKSGYGADVAQTGFDGLGMATSGAYDVVLLDIMLPDMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR A  + PV +L+    + D+V GL +GADDY+SKPF+  EL+ARIRA+ RR  
Sbjct: 61  DVLRELRAAGETVPVILLTARQGVGDRVAGLDAGADDYLSKPFHASELLARIRAVTRRPA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + A + I    + ++   +TV  +G    + LT +E Q++E L  R  + + +   +  
Sbjct: 121 TYRAGNAIEACGMRLDGVERTVACKGSSEALELTERESQLLEALMRRAGSAVARSALMAR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +   ++V +  LR KL  A G    IETV G GY L E 
Sbjct: 181 VWGPTVCADENRLEVLVHALRDKL-EACGAPARIETVRGVGYRLVER 226


>gi|17548744|ref|NP_522084.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17430993|emb|CAD17674.1| putative two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 221

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L  ++   L+   +N        D  +      FDAI+LDLGL D  G   
Sbjct: 4   ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHLF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L ALR A+   PV I S   ++ ++++GL  GADD++ KPF  +EL+AR+RA++RR  G 
Sbjct: 64  LEALRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQ 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + +    G L V    K V   G+ + LT +EYQ++  L  R +  +T+E  ++ LY   
Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++V I  LR KL     G   I+T+ G GY++  N
Sbjct: 184 NRVSANALEVVIHHLRGKL-----GDGVIQTIRGVGYMIGGN 220


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G+ I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGYAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223
                +  I++ +I  LRKK+         G+ +     IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIRE 240


>gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +ILLIEDDK ++  ++  L  EN+ V       DG E C +++   F  I+LDL +  I 
Sbjct: 5   KILLIEDDKEISEMLKNYLTVENYEVIC---AYDGQEACDYFDRTDFSMILLDLMIPKIS 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V++ +R   +  P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR
Sbjct: 62  GMDVMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRR 120

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              + Q        +  G+L +NL   T+   G R+ LT KEY++++LL        TKE
Sbjct: 121 RNQYDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                ++      +   ++V I +LR K+   +    YI TVWG GY L EN 
Sbjct: 181 QIYALVWKDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGENV 233


>gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
 gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ LA  ++  L   N+ V V   G  G+ L +  ++D I+LD+ L  + GF
Sbjct: 1   MKILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR +    PV +L+    +ED+VRGLQ GADDY+ KPF   EL+AR+ A+ RR R
Sbjct: 61  DVLHELRKSD-RVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRR-R 118

Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH       Q+++  GDL ++L  +     G R+ LT KE+ ++ LL  ++   L++   
Sbjct: 119 GHIVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++D        +++V + +LR K+ +    K  + TV G GYVL
Sbjct: 179 AEQVWDINFNSNTNVVEVAVRRLRGKVDDPFETK-VLHTVRGMGYVL 224


>gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4]
 gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L S   ++     G +G+       +D +I+D  +  + G 
Sbjct: 1   MKILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A + TPV  L+ MS ++D+V GL++G DDY+ KPF   ELVARI A+VRR  
Sbjct: 61  NLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPP 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ + +  GDL ++L A+T    G  I L  +E+ ++ELL   +   LTK MFL  ++
Sbjct: 121 IAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +++  I +LR K+ +     + + TV   GY L
Sbjct: 181 NFNFDPQSSVVETHISRLRAKI-DKPFSTSLLHTVKNTGYTL 221


>gi|324329030|gb|ADY24290.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L  E +NV     G  G+EL +   FD I+LD+ L  + G EV
Sbjct: 9   ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + P+ +L+   S+ DKV GL SGA+DYI+KPF  EEL+ARIR  +R +   
Sbjct: 69  LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 127

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + + +++   L ++ D +TV ++G  + LT +E+ ++  L   K   L++E  L +++  
Sbjct: 128 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +DV+I  LR K+      K +I TV G GYV++++
Sbjct: 188 DFAGDTNAVDVYIRFLRGKIDEVFNLK-FIHTVRGVGYVIKDD 229


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57
           M+IL+++D++A+  S+    +S +FN Y   L EDGI+  +  + +    +ILD+ +  +
Sbjct: 1   MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VR
Sbjct: 58  DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 117

Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS   +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT
Sbjct: 118 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 177

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   L  ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE A
Sbjct: 178 RAQILEEVW-GCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 231


>gi|257418638|ref|ZP_05595632.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257160466|gb|EEU90426.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 133/226 (58%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +   V   G  G+E     E+DAI+LDL L ++ G EV
Sbjct: 9   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----VR 117
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+     + 
Sbjct: 69  CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 127

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  A Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 128 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 188 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 232


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 124 STTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|207724242|ref|YP_002254639.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
 gi|206589458|emb|CAQ36419.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 1   MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K  TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+R
Sbjct: 58  DGWQVIRELRRRK-PTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 117 RGPMRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224


>gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G +++     GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227


>gi|228948817|ref|ZP_04111093.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810874|gb|EEM57219.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS   
Sbjct: 61  CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIRNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 251

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 32  MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 92  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 151

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 152 GRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 212 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 247


>gi|218906286|ref|YP_002454120.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218535301|gb|ACK87699.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G EV
Sbjct: 16  ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 76  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 134

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 135 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238


>gi|228942259|ref|ZP_04104798.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975189|ref|ZP_04135747.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981827|ref|ZP_04142122.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777939|gb|EEM26211.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784468|gb|EEM32489.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817303|gb|EEM63389.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942914|gb|AEA18810.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         ++D++I  +RKKL      + YI+T+ GRGY +
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223


>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  ++  +   DL ++L  + V   G RI LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENA 225
           D   + +  +I+V + +LR K+      K  I+TV G GYVL   ENA
Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEGQDVK-LIQTVRGMGYVLEAPENA 227


>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
 gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
          Length = 235

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+ AL  S+   L +  ++V     GE G+E+    +FD ++LD+ +    G+
Sbjct: 1   MRVLVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIMMPRRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R   I TPV +L+      D+      GADDY+ KPF+   L AR+RA+VRR  
Sbjct: 61  EVVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +    GDL V+  A+ V     RI +T +EY ++E L   +N  ++K   +  ++D
Sbjct: 121 PERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I++V++  LR+K+ +A  G + IETV G+GY L
Sbjct: 181 SAYDGDDNIVEVYVGYLRRKI-DAPFGAHAIETVRGQGYRL 220


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + IE  +  + D I+LD+ +  + GFE
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  + PV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 66  VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 125

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++   DLS+N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 126 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ +N  G +  I T  G GY++R
Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 230


>gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 219

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDDK +   I+  L    F+V + TD       LC    +DA++LDL L +I G
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCS-APYDAVVLDLTLPEIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS
Sbjct: 60  LAILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +S +  G ++++  +    ++G  + L  KE+ ++ELL       L ++     LY
Sbjct: 120 HGQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|193213480|ref|YP_001999433.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086957|gb|ACF12233.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++ + LK   + V     G++  +  ++ E  A++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIGEAVCVALKDAAYAVDWVRRGDEAADALRYGEHQAVLLDLGLPGRGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR    S PV I++    + +++ GL SGADDY+ KPF+ +EL+AR+RA++RR  
Sbjct: 61  ELLAGLRQQGSSIPVIIITARDGLSERIAGLDSGADDYLVKPFDLDELLARLRAVIRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  LI  G ++++    T      R  L+ +E+ ++  L L+    L++      +Y 
Sbjct: 121 GQASGLIGNGQITLDPATHTAFCGESREVLSSREFAVLHALLLQPGRILSRSALEERVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ID  I +LRKKL  A+     I+ + G G+++
Sbjct: 181 WDEEVESNAIDYLIHQLRKKLGAAS-----IKNIRGAGWMV 216


>gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
 gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 25  SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 85  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 144

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234


>gi|77361935|ref|YP_341509.1| transcriptional activator of copper resistance (two-component
           regulatory system with CusS) [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876846|emb|CAI89063.1| transcriptional activator of copper resistance (two-component
           regulatory system with CusS) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/229 (37%), Positives = 134/229 (58%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L    F V +   G DG  L     FD IILD+ L D+ G+
Sbjct: 1   MRILIVEDEIKTGDYLKQGLTEAGFQVCLARNGLDGHHLAMTELFDVIILDIMLPDVSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ++R AK  TPV  LS   S++D+V+GL+ GADDY+ KPF   E++AR+R ++RR  
Sbjct: 61  RILESVREAKNDTPVLFLSARDSVDDRVKGLELGADDYLIKPFAFSEVLARVRTLIRRGG 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + I+T  DL +++  + ++  G RI L+ KE+ ++ELL  R+   L++ +  + ++
Sbjct: 121 VQKVADILTIADLEMDIPKRKIQRAGKRILLSNKEFSLLELLLRREGEVLSRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227
           D   E +  +IDV I +LR K+ +    K  I TV G GY L  ENA++
Sbjct: 181 DMNFESDTNVIDVAIRRLRGKVDDEYSIK-LIHTVRGMGYKLEVENAQN 228


>gi|83942173|ref|ZP_00954635.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. EE-36]
 gi|83847993|gb|EAP85868.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. EE-36]
          Length = 218

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+KALA  ++  L+++   V +   L E    L +   +D ++LDL L D  G
Sbjct: 1   MRILLIEDEKALARPLKEHLEADLHIVEWFCTLDEADAAL-RTLSYDVVLLDLQLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L  LR   I TP+ IL+    + D++ GL  GADDY+ KPF+ +E+ ARI  + RRS
Sbjct: 60  LDFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   D+ VNL   TV      + LT KE+ + E L  RK   + KE     +Y
Sbjct: 120 ANQFAQMVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  +E E   I+V I +LR KL     GK+ I T  G GY L
Sbjct: 180 DYGEEVESNAIEVHISRLRTKL-----GKDLIATHRGLGYAL 216


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+   EL     FD IILD+ L ++ G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+        ++  G +  +L    V V G +I LT KE++++     RK   + ++ 
Sbjct: 123 RQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQE 232


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 135/236 (57%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 12  VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 72  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 132 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 192 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 246


>gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 25  SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 85  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGP 144

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 145 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 204

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 205 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 234


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++++A   +  L+   F V + + GE G+      +FD +ILDL L  + GFE
Sbjct: 3   RILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +E  L++  F   V   G+   +      FD I+LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR A++S PV IL+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R  +R
Sbjct: 63  VLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G+LS++L  +        + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   +ETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAGRVETVRGMGYRL 218


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + IE  +  + D I+LD+ +  + GFE
Sbjct: 12  KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  + PV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 72  VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 131

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++   DLS+N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 132 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ +N  G +  I T  G GY++R
Sbjct: 192 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 236


>gi|296103876|ref|YP_003614022.1| two-component system, OmpR family, response regulator TctD
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295058335|gb|ADF63073.1| two-component system, OmpR family, response regulator TctD
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L  E F V     G     L +   +   ILD+G+    G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQEGFAVDCVSDGRAADHLLQGENYAVAILDIGMPGFDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    + PV  L+  S++ D+V+GL +GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q     G+L  + D   + ++   + LT +E  ++++L  R+   ++++   + ++ 
Sbjct: 121 GRTQERQRLGELEYDDDGFFL-LRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+   + +D++I +LRKKLS   G    I T+ G GYVL
Sbjct: 180 LNDDVSPESLDLYIHRLRKKLS---GSGVRITTLRGLGYVL 217


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL+++    TVE +G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  K    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|21232781|ref|NP_638698.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767145|ref|YP_241907.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114601|gb|AAM42622.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572477|gb|AAY47887.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D  +DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQQDGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A TV + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQLGAFVFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L+   D+     I++++ +LR+KL +A      I TV G GY L E       E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLIDA---PLRIVTVRGAGYKLEEADPQAVTE 228


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +   I   L  E F V +   G++G ++    +FD +ILD+ L ++ G E
Sbjct: 7   KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R      P+  L+ + S E+   GL SGADDY++KPF   EL+AR+++++RRSR 
Sbjct: 67  ICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRN 126

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++        D+ VN  +KTV   G +I LT  EY+++          +++   L +
Sbjct: 127 FNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLEN 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    +    ++DV++  LRKKL      +  I TV G GYVL+E+ +D
Sbjct: 187 VWGVNYDIGTNVVDVYVNYLRKKLEKENNDR-LIHTVIGMGYVLKEDDED 235


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TP+ +LS  S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIR-AKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L++NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWS--LSTVWGIGY 228


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++IEDD ++   ++L L  E ++V     GE G+ L K    D +++D+ L  + G E
Sbjct: 4   KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R +R      P+ ILS      DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRRS 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  +++   G + ++L+A+   V G  + LT +EY ++       +   ++E  + 
Sbjct: 124 RGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  R     + +D FI +LR  + + A    ++ETV G GY
Sbjct: 184 NVWGSRYFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGY 226


>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G++     EFD  ILDL L  I GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQIRDKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A  +I    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228


>gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD+ +A  +   L+S+ F V   D  +DG         +A  L L    +P  
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   ++ PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGIDVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      
Sbjct: 118 RQAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y   +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|228930116|ref|ZP_04093126.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228936367|ref|ZP_04099165.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823199|gb|EEM69033.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829615|gb|EEM75242.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS   
Sbjct: 61  CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
 gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + LK     V   D  ED  E   F      D  ++DLGL D 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKDLGHQV---DSAEDAKEADYFLHESCPDIAVVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++  R   ++ P+ +L+   S ++KV+ L SGADDY++KPF  EELVAR++A++R
Sbjct: 58  DGLSMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++  G+  ++L  K   V G  + LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+       + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQFH-SDDVIVTVRGQGY 218


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   +   L+ +   V     GE+ +E  K  E+D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGS 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +  G+L ++ + + V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 KQDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D   +   I   L+ E + V   +  E  +E  K  E D  ++D+ L  + GFE
Sbjct: 5   RIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGFE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +R +R  +   STPV  LS      DKV GL+ GADDYI+KPF+  EL+ARI+A+ RR 
Sbjct: 65  FVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124

Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +   Q        IV  DL +++D   V+++G +++LT  E+ ++  L+  +    ++ +
Sbjct: 125 QLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
 gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43]
          Length = 223

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ +   +   L +E +++     G  G+E  +  +FDAIILDL L  + G 
Sbjct: 1   MKLLVVEDDERIWQFLFRGLSAEGYSLTWEANGRAGLETARREQFDAIILDLMLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR   +ST + +L+ + +  D V+GL+ GADDY+SKPF  +EL AR+  + R   
Sbjct: 61  EICRRLRAEGVSTKILMLTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLP 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q   ++  G L ++  A   E  G  + LT  E+ ++ELL   +   +T+   L  +
Sbjct: 121 ATRQPPHILSAGLLQLDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV++ +LR KL  +AG  + I TV GRGY L
Sbjct: 181 WGTDQDPLTNVIDVYVRRLRSKL-KSAGAPDMITTVRGRGYRL 222


>gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius
           sp. HTCC2601]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   + + L+   F+  + +   D         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDAVLGDGLSVGLRLSGFSPELVETCADARHAIAMEGFEAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR +    PV +L+    ++D+V GL +GADDY+ KPF   EL AR+RA+ RR++
Sbjct: 61  ELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRALTRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A++L+    L+++    T  + G R    I  + +EY ++  L  R  + L+K     
Sbjct: 121 GRAENLLHWNGLALD----TARMSGRRGPEEIAFSRREYTVLAALMERPGSILSKATLEE 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            LY  +++ E   ++V +  LR KL     G  +I+TV G GY L   A
Sbjct: 177 RLYGWQEDIESNTVEVHVHHLRAKL-----GSGFIQTVRGAGYRLAPEA 220


>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 123 AQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +Q+  V     +G + V+     V V G  +HLT  E+ ++ LL+       + E     
Sbjct: 127 SQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFEK 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 187 IWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 228


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 56  VRVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGL 115

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 116 AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 175

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  +S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L
Sbjct: 176 SAVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQIL 235

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++     +  +++++I  LRKK+   AG    I T  G GY+++  
Sbjct: 236 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 282


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 21  VRVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 81  AVLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 140

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  +S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L
Sbjct: 141 SAVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQIL 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++     +  +++++I  LRKK+   AG    I T  G GY+++  
Sbjct: 201 DRVWNYDFGGQANVVELYISYLRKKID--AGRTPMIHTRRGAGYLIKPG 247


>gi|229506825|ref|ZP_04396334.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229510381|ref|ZP_04399861.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229517488|ref|ZP_04406933.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229605298|ref|YP_002876002.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|229345524|gb|EEO10497.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229352826|gb|EEO17766.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229357176|gb|EEO22094.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229371784|gb|ACQ62206.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
          Length = 247

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S+++ L  + + V   + G   +   K  +F A+ILDL L D+ G 
Sbjct: 30  MRLLLVEDDTLLGESMQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS 
Sbjct: 90  EVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSS 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI  G+L ++L  + +      + LT  EY+++  L  +    ++KE+    L+ 
Sbjct: 150 GSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHG 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+V I  LRKKL +     N ++ V G GY++
Sbjct: 210 WDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRGVGYMI 245


>gi|222111390|ref|YP_002553654.1| winged helix family two component heavy metal response
           transcriptional regulator [Acidovorax ebreus TPSY]
 gi|330825948|ref|YP_004389251.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|221730834|gb|ACM33654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax ebreus TPSY]
 gi|329311320|gb|AEB85735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L  E + V V   G DG+ L     +D I+LD  L  I G 
Sbjct: 1   MKLLIVEDEIKLAEYLRKGLSEEGYVVEVAHNGVDGLHLAMEGAYDLIVLDGMLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+    +ED+VRGL++GADDY+ KPF   ELVARI  +++RS 
Sbjct: 61  GVLAALRQSR-QTPVLMLTARMRVEDRVRGLKAGADDYLVKPFAFTELVARIEVLLKRSH 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H    +   DL ++L  + VE  G R++LT KE+Q++ LL  R+   L++     
Sbjct: 120 PLPASHEALTLAIDDLHMDLVRRRVERAGKRLNLTAKEFQLLSLLLRRQGEVLSRAEIAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D   +    +IDV I +LR K+ +    +  + TV G GYVL   AK
Sbjct: 180 QVWDVNFDHGTNVIDVAIRRLRAKM-DTPFDRPLLHTVRGMGYVLEARAK 228


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 230

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A +I   L  + F+  +   G+ G++L     +D I+LDL L ++ G+E
Sbjct: 6   KILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPELNGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K S P+ +L+ +   EDK+ G + GADDY+ KPF+  EL+ARI   ++R+ G
Sbjct: 66  VCSEVRKRKPSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKRNAG 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S    +   +L ++LD KTV   G +I LT KE+ ++E L   K   ++K    + L
Sbjct: 126 AGASQENTLKIANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSAL 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  ++  + +++V+I  LRKK+      K  I T  G GY++ E
Sbjct: 186 WEPNNQQSLNVVEVYINFLRKKIDKDFIPK-LIHTKTGMGYIIAE 229


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+    EL+LK E F V   + G  GI     +  D ++LDL L D  G++
Sbjct: 3   KILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + + V + + PV ++S      DKV GL+ GA+DYI+KPF+  EL+ARI+ ++RR   
Sbjct: 63  LCKEI-VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++    + +V G+L +N D K V+  G +I LT KEY ++E L  R     T++  L
Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      + + +D+ I +LRKK+   +    Y++T++G GY L
Sbjct: 182 EIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227


>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDIP 58
           I +IEDD+A+   +E  L  E + V V   G++G  L KF +    FD +++DL +  I 
Sbjct: 8   IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEG--LRKFEQAQGRFDLLLVDLMMPKID 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV+R +R A    P+ I+S   S  DK  GL  GADDYI KPF+  EL AR++AI+RR
Sbjct: 66  GMEVIRRIR-AYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRR 124

Query: 119 SRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  +A      + +  GDL ++ D+  V  Q   I LT KE++++ L +   N   TK  
Sbjct: 125 ATQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++     +  +I+V + +LR K+ +      YI+T+WG GY
Sbjct: 185 IYAKVWNDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGY 230


>gi|71901162|ref|ZP_00683267.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71729084|gb|EAO31210.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
          Length = 231

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 129/237 (54%), Gaps = 12/237 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LLIED+  LA +I   ++      +V D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLIEDNADLADAIIRRMRRHG---HVVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  LR    +TPV IL+   +IED+V  L  GADDY+SKPF+  E  AR R ++R
Sbjct: 58  DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG+A  ++  G    +  A  + + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RNRGNASEVVRIGGFEFDNAAHRIRLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231
           L++  D      I++++ +LR+KL  A      I TV   GY+L    E    E C+
Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVHRAGYLLEPIVEARGHEACD 231


>gi|332829361|gb|EGK02015.1| hypothetical protein HMPREF9455_00137 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +  SI   L SE++ V        GIE  + YE+D I+LD+ L    G 
Sbjct: 1   MKILIVEDEYEILKSINSFLLSESYVVEKATDYASGIEKVQLYEYDCILLDISLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  ++ A I+    I+S  +S+EDK+ GL  GADDY++KPF+  EL ARI+A++RR +
Sbjct: 61  KILEEMKKAGITGNTIIISAKNSLEDKITGLDLGADDYLTKPFHLAELHARIKAVLRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               +++  G++SV+ D   V +    + L  KE+ ++   ++  N  +TKE+   H++ 
Sbjct: 121 LDGSNVLKLGNVSVDFDKHLVYIDDQELRLNRKEFDILSFFAMNTNKLITKEVLAEHVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D  +    +   I  LRKKL ++  G  + E V+G GY
Sbjct: 181 DNIDSADNFDFVYAQIKNLRKKLKDSNAGIMF-ENVYGIGY 220


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 137/226 (60%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL++ED+ A+++ I++ L +     Y  D   DG E     E   FD I+LD+ L +I 
Sbjct: 3   RILIVEDEPAISNLIQMNLAAAG---YCCDCAFDGAEAADRLEQEGFDLILLDIMLPEID 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E++  +R  +I  PV  L+  ++ EDKV+GL++GADDY++KPF   EL+AR+  ++RR
Sbjct: 60  GYELMDYIRPLEI--PVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S +  GDL +++ A+ V+ QG  ++LT KEY+++ LL   KN  L ++     +
Sbjct: 118 CQ-KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKI 176

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +D+ + +LRKK+    G ++ I+TV+  GY L ++
Sbjct: 177 WGSGYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218


>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPG 59
           MR+L+++D+K +   + + LK+E+++V     G + ++L  K  + D ++LD+ +    G
Sbjct: 1   MRVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL  +R   ++ PV  L+  ++  DK+ GL +GADDY++KPFN  E++ARI+++ RR 
Sbjct: 61  LEVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQ 120

Query: 120 RGHAQ-------SLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +   Q       S +  G +++  D+ TV  + G  + LTG E+ ++ LL+   N   + 
Sbjct: 121 QLLNQPPQAKDTSKVEVGSITIEKDSHTVTTLSGQDVQLTGSEFDILYLLATHLNQVFSA 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L  ++   ++P  + + V +  LR KL  A  G+  ++TVWG GY
Sbjct: 181 EDILQEVWPEGNKPSSQTVMVHVSHLRDKLEAATNGEKIVKTVWGLGY 228


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 24  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 84  TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 143

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 144 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 203

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     + +  GGK      IET  G GY++RE
Sbjct: 204 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 255


>gi|261346186|ref|ZP_05973830.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
           4541]
 gi|282565842|gb|EFB71377.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
           4541]
          Length = 222

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED + L+  ++  L +  F V + D G    +L +  ++  ++LD+ L  + G 
Sbjct: 1   MRMLLVEDHEELSLWLQKALTASGFAVDIADDGYIADQLLQTEDYSLVVLDVSLPRMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ++R  +  TPV +L+  S + D+V+GL +GADDY++KPF+  EL ARIRA++RRS 
Sbjct: 61  EVLASMRKRQQETPVLLLTANSDVSDRVKGLNAGADDYLTKPFDIAELEARIRALLRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+       GDL  + D   + ++   + LT +EY ++  L  R+   ++K      ++ 
Sbjct: 121 GNINESQCYGDLCFHDDGYFL-LRAEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE  ++ I++++ ++RKKL   AG    I T+ G GY L +
Sbjct: 180 LSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 219


>gi|256374532|ref|YP_003098192.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255918835|gb|ACU34346.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 233

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  +  + + E +       GE  I     ++ D ++LDL L D+ GF
Sbjct: 7   VRLLVVDDEPHIADLVATVARYEGWQAVTAGSGEAAIRAALDFQPDIVVLDLMLPDVDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+      D+V GL  G DDY+ KPF+ EEL+AR+RA++RRS 
Sbjct: 67  TVLDRLRGEGAMVPVVFLTARDGTADRVAGLTRGGDDYLVKPFSVEELMARLRAVLRRST 126

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +  +S++   DL ++ D + V      + LT  EY+++  L  R  T LTK   L+H+
Sbjct: 127 GPSWKRSVLKVADLVLDEDTREVRRGDRLVTLTPTEYELLRYLMRRSPTVLTKAQILDHV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        ++++ +  LR+KL +  G +  I TV G GYVLR
Sbjct: 187 WEYDFGGRSNVVELVVSHLRRKL-DVEGDEPLIHTVRGVGYVLR 229


>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 225

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED   L  ++  ML  E F V     G++G+ L +   +DAIILD+ L  I GF
Sbjct: 1   MKLLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVMLPGIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR   I TPV  L+   S+ED+V+GL  G DDY+ KPF   EL AR+RA++RRS 
Sbjct: 60  SIVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V V G  + LT K+Y+++E L   +   LTKE   + ++
Sbjct: 120 ALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  + I++VF+ +LRKKL    G    I+TV G GY+L
Sbjct: 180 GFDSDTTISIVEVFVHQLRKKL-EPFGYHADIQTVRGIGYML 220


>gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  L  ++ + L +  + V     G   +     +  D +ILDLGL D+ G +
Sbjct: 19  RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGLPDMDGVD 78

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           VLR LR  + ST PV +LS      DKV  L +GADDYI+KPF  +EL+AR+RA+ RR  
Sbjct: 79  VLRDLR--RWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVP 136

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++ +   SV+L A+ V+  G  + LT  E++++E+L L  N  +T++  L  ++
Sbjct: 137 APEAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V++ +LR+KL   AG   ++ T  G GY
Sbjct: 197 GPGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGY 236


>gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei B7210]
          Length = 240

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226


>gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 9]
          Length = 241

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225


>gi|121596283|ref|YP_988179.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608363|gb|ABM44103.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 224

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219


>gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 248

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L IEDD+  A+ I   L+   F V     G DG+      EFD I LD  L  + G  +
Sbjct: 27  VLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLAI 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+  
Sbjct: 87  LTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAA 146

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +V G L ++L ++     G  I L   EY+++E +      T+T+ M    ++
Sbjct: 147 PATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   +I+V + +LR+K+ + +  K  I+TV G GY L
Sbjct: 207 GYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247


>gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 14]
          Length = 239

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A++  +   L+ E ++V V + G + +E  K    D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDNP-DLVLLDLGLPKVDGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+  
Sbjct: 62  VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRT-- 119

Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +  TG+L  ++ D +    +G  + LT KE+ ++ +L   +   + +E  +  ++D
Sbjct: 120 -PTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWD 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                  K +D+ I  LR+KL + A    YI TV G G+       D
Sbjct: 179 TAWFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFERPKPD 225


>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  S++  L+  ++ V +   GED + +     +D I+LD+ L  + GF
Sbjct: 1   MRILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPRLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  + + P+ +L+ +  ++ +V GL +GADDY++KPF   EL ARIRA++RR  
Sbjct: 61  EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + +    L + LD +T E  +G R I L  KEY ++E L       L++ M   H+
Sbjct: 121 TTKTAALCF--LDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   E    +IDV+I  LR+KL       + I T+ G GY L+E A
Sbjct: 179 WDCETEHLSNVIDVYIRYLRRKLCE-NHEPDVIHTIRGAGYQLKEPA 224


>gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
 gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G +++     GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +     +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 273

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+  
Sbjct: 120 FKKYNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     + +  GGK      IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240


>gi|222112512|ref|YP_002554776.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221731956|gb|ACM34776.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 224

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V +V    E    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRGSGAVVDHVASGTEVDTALLTNNEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 61  LEVLKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V+I +LRKK+     G   I TV G GY L
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIER---GPIRIATVRGLGYCL 219


>gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  I   LK   + V +   G+ G       E+D IILD+ L  I G 
Sbjct: 1   MRILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIMLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R  K+S P+ +L+   S+ED+V+GL  GADDY+ KPF   EL+ARIRA+ RR  
Sbjct: 61  KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL+++L  + V+     I L+  E++++E L    N  LT+      +++
Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   ++DV++  LR+K+      +  + TV G GY ++
Sbjct: 181 LDFYSNSNVVDVYVGYLRRKIDRGF-QRPLLHTVRGVGYCMK 221


>gi|113866571|ref|YP_725060.1| response regulator [Ralstonia eutropha H16]
 gi|113525347|emb|CAJ91692.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD  LA  +   L+   + V +VT+ G +         FD +ILDLGL  + G
Sbjct: 1   MRILIAEDDDVLADGLTRSLRHSGYAVDHVTN-GLEADSALSTQTFDLLILDLGLPRMSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VRR 
Sbjct: 60  LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL 
Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNEQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 180 EWGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218


>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 242

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD A+   ++  L+ + + V +   G D +       F A  +D+ L ++ GF
Sbjct: 19  LKILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGF 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR    S PV +L+   ++ED+V GL SGADDY++KPF   E  ARIRA+VRR  
Sbjct: 79  EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ +  G+L+  LDA TV     G+ + ++ KE+ ++ +L+      LT+   L+ +
Sbjct: 139 AAGKATLKIGELA--LDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +  ++D ++  LR+KL     G   I TV G GY L
Sbjct: 197 WGTTAHIDANVVDQYVSYLRRKLEPTQSGVT-ISTVRGVGYAL 238


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 13/237 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  LA  +   L+ E F V     G  G+E       D ++LD+ L  I GF
Sbjct: 1   MHILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ LR  +   PV +L+      D++ GL+ GADDY++KPFN  EL ARIRAI+RR  
Sbjct: 61  EILKRLR-QRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + GH    I T  + ++   + V   G +I LT  E+ ++E+L       L+++  
Sbjct: 120 RDTPATGHR---IETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDAL 176

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           + + Y+ +  P  + ID+ I  LRKKL N   G + I+T+ G GY      +D   E
Sbjct: 177 MENFYNRKATPFDRSIDMHISHLRKKLEN---GDDLIKTIRGVGYQFCRTPEDAAAE 230


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S +FN Y  +L  DG+E          DA++LD+ +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    A+S+ +   DLS++   + V     RI LT  E+ ++E+L       LT+   
Sbjct: 118 RTKPDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228


>gi|188591286|ref|YP_001795886.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|170938180|emb|CAP63166.1| putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDDVLADGLTRSLRHSGYAVDHVANGLEADSALSTQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VRR  
Sbjct: 61  EVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGATLMRHGPLAYDQVGRIAYLNDQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEV---GGIRIATVRGLGYCL 218


>gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 248

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L IEDD+  A+ I   L+   F V     G DG+      EFD I LD  L  + G  +
Sbjct: 27  VLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLTI 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+  
Sbjct: 87  LTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAA 146

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +V G L ++L ++     G  I L   EY+++E +      T+T+ M    ++
Sbjct: 147 PATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   +I+V + +LR+K+ + +  K  I+TV G GY L
Sbjct: 207 GYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 3   KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 229


>gi|16265177|ref|NP_437969.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|307320334|ref|ZP_07599752.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15141317|emb|CAC49829.1| putative two-component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|306894056|gb|EFN24824.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ALA  +  +L+   + V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNRALAEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++S++L +++    G  I +  +E  ++ELL +R    + K+  +  L  
Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D+     I+ ++ +LRK+L+        + T  G GY L + A  E
Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFG---LTVRTARGIGYYLDKTAGPE 225


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G A  +   G+L ++  A+ V +    I LT KE+ ++E L LR    ++K   L H+
Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  I++V+I  LR+KL     G   I+TV G GY L
Sbjct: 181 WDFAYDGDPNIVEVYISTLRRKL-----GPTLIKTVRGAGYRL 218


>gi|310639384|ref|YP_003944143.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308752960|gb|ADO44104.1| two component transcriptional regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 220

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L +EDD A+A  +   L    F V     GE    L    E+D I+LDLGL  + G 
Sbjct: 1   MRALCVEDDAAIAADVAAALTQAGFLVDHAADGEAAWFLGDTEEYDLIVLDLGLPQLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R      PV IL+   + +++V G+ +GADDY+ KPF   ELV+R RA+VRR+ 
Sbjct: 61  TVLRRWRAGGRVMPVLILTARGTWQERVEGIDAGADDYLPKPFQMAELVSRARALVRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G L V+     V + G ++ +T  EY+++ LL+L ++  +     L HLY 
Sbjct: 121 GQAAPRIAAGALEVDTTRMEVRLNGAQVFVTALEYRILSLLALNQSRAVPAVELLEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D  EV  ++  I +LR+KL     G   + T  G GY L+ +A
Sbjct: 181 DDDTKEVNALEAAIARLRRKL-----GPGILNTRRGFGYYLQTDA 220


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   +   L+   F V     G + ++L + +  D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR    + PV  L+      DKV GL  G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 71  VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGG 130

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +V  DL +  D+  V   G  + L+  E++++  L L  N  L+K   L+H+
Sbjct: 131 VDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     E  I++ +I  LR+KL +  G +  I T  G GYVLR
Sbjct: 191 WDYDFNGEAGIVESYISYLRRKL-DTEGLEPLIHTKRGVGYVLR 233


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ALA  I   L+   ++V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLG 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/236 (36%), Positives = 137/236 (58%), Gaps = 16/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57
           M+IL+++D++A+  S+    +S +FN Y   L EDGI+  +  + +    +ILD+ +  +
Sbjct: 24  MKILVVDDEQAVRDSLR---RSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 80

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VR
Sbjct: 81  DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140

Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS   +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT
Sbjct: 141 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   L  ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE A
Sbjct: 201 RAQILEEVW-GCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETA 254


>gi|16762974|ref|NP_458591.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144461|ref|NP_807803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420191|ref|ZP_03353257.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213427225|ref|ZP_03359975.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581684|ref|ZP_03363510.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609432|ref|ZP_03369258.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650815|ref|ZP_03380868.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854794|ref|ZP_03383034.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828852|ref|ZP_06546595.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300973|pir||AD1022 two-component response regulator pmrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505281|emb|CAD09277.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140099|gb|AAO71663.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56540681|gb|AAV92794.1| PmrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L  ++E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYAC-------DGVSTARAAEHSLESGHYSLMVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIR
Sbjct: 54  LPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+
Sbjct: 114 ALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +Y+  +EP    ++V I  LR K+     GK+ I TV   GY+L
Sbjct: 174 LYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRRFGYML 216


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 128/236 (54%), Gaps = 18/236 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  +A  + L L+   + V   + G  GIEL    + D +ILDL L  + G 
Sbjct: 2   MKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R    +TP+ +L+     ED++ GL SGADDY+ KPF+  E+++R++AI+RR+ 
Sbjct: 62  EVCRRIRTWA-NTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAG 120

Query: 120 ---------RGH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                     GH       +   +  G L +N+ A+ V V    + LT KE+ ++ L++ 
Sbjct: 121 LYSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAK 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +   T+E  LN ++      + + +DV I  LRKKL +    +  I+TVWG GY
Sbjct: 181 APDRVFTRETLLNQVWGYSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGY 236


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|196039567|ref|ZP_03106872.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196029727|gb|EDX68329.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +  +V     GE+ ++L +  +++ I+LD+ L  + GF+
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQVREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTER 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       IV GD+ ++ + + V +    ++LT KE+ ++ELL++ ++   ++E  LN
Sbjct: 123 QTEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYFR 228


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 7/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  ++  I   L SEN+ V V + G DGI   K  ++ A+ILDL L D+ G +V
Sbjct: 18  ILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGIDV 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR +R ++ + PV IL+      D + GL +GADDY++KPF+  EL AR++A +RR    
Sbjct: 78  LRHIRESR-NVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLYL 136

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++++V G+L +N ++  + ++     LT KE++++EL+        +K     
Sbjct: 137 NAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLFR 196

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++      +   + V I +LR+K+        Y++TVWG GY L     +E+
Sbjct: 197 SVWGDDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRLHGGGGEES 249


>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV---YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           RILL++DD  L   +   L+ ++F+V     T L +  +E  +F  FD ++LD+ +    
Sbjct: 5   RILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLER-EF--FDLLLLDVMMPGED 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE    LR  +   P+ +L+    ++D+V+GL  GADDY++KPF  EELVARIRA++RR
Sbjct: 62  GFEACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRR 121

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+       +   I  G   + LD +++     RI LT  E+ ++  L+     TL+++ 
Sbjct: 122 SQEPDMAKPSPGAIHFGPFRLALDTRSLWRGEERIPLTETEFSLLHALASHPWQTLSRDR 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +  G + P  + +DVFI +LR+ + +      Y++TVWGRGYV 
Sbjct: 182 LIQMIRAGDEVPGARGVDVFISRLRRLIEDDPATPRYLQTVWGRGYVF 229


>gi|229169815|ref|ZP_04297512.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613665|gb|EEK70793.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHVVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL     G+ YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKGR-YIQTIHGRGYSMVE 225


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           LN ++  + E     ++  I +LR K+         I TVWGRGY L    + +T
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPEQRDT 239


>gi|72162340|ref|YP_289997.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916072|gb|AAZ55974.1| response regulator receiver [Thermobifida fusca YX]
          Length = 217

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I + L+ E+  V V   G+  +E     ++D IILD  L    G 
Sbjct: 1   MRVLVVEDEQVLADAIAVGLRRESMAVDVAYDGDSALERANVNDYDVIILDRDLPGTHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++L  A+    + +L+    ++DKV GL  GADDY++KPF   ELVAR+RA+ RRS 
Sbjct: 61  EVCKSLATARYPGRILMLTAAGELDDKVAGLSLGADDYMAKPFAFAELVARVRALARRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++    TVE  G  + LT KE+ ++E+L       ++ E  L   +D
Sbjct: 121 PPLPPVLRRQGITLDPANHTVERDGRPVSLTPKEFAVLEVLMRANGAVVSAEKLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LRKKL    G    I TV G GY
Sbjct: 181 ENADPFTNVVRVTVMTLRKKL----GDPPVIHTVQGAGY 215


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +E  L    F + V   G  G EL     +DAII+D+ L  + G 
Sbjct: 32  MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   I TPV ILS   S+ D+V GL+ G DDY++KPF   EL+AR+ +++RRS+
Sbjct: 92  EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + +++ +  GDL ++L ++ V        L  +E+ ++E L   K   +T+   L +++
Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                P   +++V IC+LR+KL      +  ++T    GY L E++
Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPR-LLQTFRKAGYALVEDS 256


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra
           [Mycobacterium kansasii ATCC 12478]
          Length = 233

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGP 141

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++D
Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVD 201

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 202 VFIGYLRRKL-EANGGPRLLHTVRGVGFVLR 231


>gi|228903599|ref|ZP_04067720.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228968205|ref|ZP_04129204.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791468|gb|EEM39071.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228856028|gb|EEN00567.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E + +       +G+ +    ++D I+LD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K +TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVK-TTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDCN 119

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 222


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+ +  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     + +  GGK      IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  NF V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR+  
Sbjct: 63  VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTAD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++       ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 ESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +  YD   +P  K+IDV I +LR K+ +      +IET+WG+GY  +E
Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYRWKE 229


>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 227


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ + +   ++ + ++LDL L  + G++
Sbjct: 6   RILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR      PV +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCRELRSGS-QVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 119 SRGHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +   A S    G      DL VNL   +V   GH + +  KE +++  L+   N   T+E
Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+H++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 185 QLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHTNWA--ITTVWGIGY 229


>gi|188990240|ref|YP_001902250.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732000|emb|CAP50188.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 290

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D  +DG+    + ++  FD ++LD+GL  +
Sbjct: 58  MRLLLVEDNADLADAIVRRMRRSG---HAVDWQQDGLAAASVLRYQSFDLVVLDIGLPKL 114

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 115 DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 174

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A TV + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 175 RNRGQASEVVQLGAFVFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNG 234

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L+   D+     I++++ +LR+KL +A      I TV G GY L E       E
Sbjct: 235 LFGFDDDAGPNAIELYVGRLRRKLIDA---PLRIVTVRGAGYKLEEADPQAVTE 285


>gi|311103968|ref|YP_003976821.1| transcriptional regulator TctD 1 [Achromobacter xylosoxidans A8]
 gi|310758657|gb|ADP14106.1| transcriptional regulatory protein TctD 1 [Achromobacter
           xylosoxidans A8]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ +A  +   L    F   V D   D      F    E+DAI++DL L D 
Sbjct: 1   MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR +R     TPV +L+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VR
Sbjct: 58  HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G LS + +++   + G  + LT +E+  +  L  R    + K      
Sbjct: 118 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++    E     I+V + +LRKKL+   G    I TV G GY+L E+   E+ E
Sbjct: 178 VFTHDSEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML-ESVASESAE 227


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LTG E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 134/233 (57%), Gaps = 15/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + L+++D+K +   I+  L+ + + V     G + +++ K  E+D ++LD+ L ++ G E
Sbjct: 3   KALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 63  VCQAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSK 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      +I   DL ++LD++ V  +   ++LT KE+ ++ELL+   +   ++E  L
Sbjct: 122 KAKAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLL 181

Query: 176 -----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                N L++  D   V+ +DV + +LR+K+        YI T WG GY  +E
Sbjct: 182 SIVWGNKLHEAGD---VRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 231


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++EDD++L   +   L  + + V   D  +DG+   +  +   FD +ILD+GL  +
Sbjct: 1   MRILVVEDDESLGSGLCTALGQDGYTV---DWLKDGLHASQALQSEHFDLVILDVGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL+ +R+ K   PV +L+   +IED++ GL +GADDY+ KPF  +EL AR+RA++R
Sbjct: 58  DGFSVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A + I   ++ +  +A+ V ++   + LT +EY ++  L        T+++    
Sbjct: 118 RASGRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQL 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   D+ E   ++V I  +RKKL +       + TV G GY++
Sbjct: 178 LYGWGDDVESNTLEVHIHHIRKKLFSG-----LVRTVRGVGYIV 216


>gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD   A  +  +L     +V V + GE G+   +  EFDA+++D  +  + G 
Sbjct: 1   MRVLVIEDDIEAADFVRKVLSEAGHDVAVENDGEAGLSRAQSDEFDAMVVDRMMPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R    +TP   L+ +  +E++V GL++G DDY+ KPF   EL+AR+ A+ RR+ 
Sbjct: 61  EMLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRRAS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +  GDL ++L A+TV     +I L  +E++++E L    +  +T+ M L  ++
Sbjct: 121 SEAPTTKLQVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      K++    + TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKID-----KDFEVALLHTVRGAGYRLQ 222


>gi|29375629|ref|NP_814783.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227517974|ref|ZP_03948023.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555159|ref|ZP_03985206.1| response regulator [Enterococcus faecalis HH22]
 gi|229546898|ref|ZP_04435623.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229548990|ref|ZP_04437715.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971502|ref|ZP_05422088.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974117|ref|ZP_05424703.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256617972|ref|ZP_05474818.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256761808|ref|ZP_05502388.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957140|ref|ZP_05561311.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256960233|ref|ZP_05564404.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256962524|ref|ZP_05566695.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077936|ref|ZP_05572297.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257081302|ref|ZP_05575663.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083959|ref|ZP_05578320.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086407|ref|ZP_05580768.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089457|ref|ZP_05583818.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415667|ref|ZP_05592661.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257421297|ref|ZP_05598287.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293382595|ref|ZP_06628528.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712]
 gi|293387823|ref|ZP_06632365.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613]
 gi|294779303|ref|ZP_06744707.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859890|ref|ZP_07105978.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11]
 gi|307269675|ref|ZP_07551008.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272069|ref|ZP_07553334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307275532|ref|ZP_07556674.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307278905|ref|ZP_07559965.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307286908|ref|ZP_07566988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307289987|ref|ZP_07569912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900988|ref|ZP_07760281.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904612|ref|ZP_07763770.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906799|ref|ZP_07765796.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312952678|ref|ZP_07771540.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|312978946|ref|ZP_07790672.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|29343090|gb|AAO80853.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933598|gb|AAS49393.1| response regulator [Enterococcus faecalis]
 gi|227074592|gb|EEI12555.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175707|gb|EEI56679.1| response regulator [Enterococcus faecalis HH22]
 gi|229306011|gb|EEN72007.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308063|gb|EEN74050.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962520|gb|EET94996.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255966989|gb|EET97611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256597499|gb|EEU16675.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683059|gb|EEU22754.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947636|gb|EEU64268.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256950729|gb|EEU67361.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256953020|gb|EEU69652.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985966|gb|EEU73268.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256989332|gb|EEU76634.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991989|gb|EEU79291.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994437|gb|EEU81739.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998269|gb|EEU84789.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157495|gb|EEU87455.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257163121|gb|EEU93081.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291080038|gb|EFE17402.1| DNA-binding response regulator CsrR [Enterococcus faecalis R712]
 gi|291082798|gb|EFE19761.1| DNA-binding response regulator CsrR [Enterococcus faecalis S613]
 gi|294453670|gb|EFG22068.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295114600|emb|CBL33237.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850708|gb|EFK78457.1| response regulator ArlR [Enterococcus faecalis TUSoD Ef11]
 gi|306498945|gb|EFM68438.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306502033|gb|EFM71320.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504387|gb|EFM73597.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306507920|gb|EFM77048.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306511289|gb|EFM80294.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514003|gb|EFM82594.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310627053|gb|EFQ10336.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629194|gb|EFQ12477.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632125|gb|EFQ15408.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311288383|gb|EFQ66939.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311291889|gb|EFQ70445.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027027|gb|EFT38959.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029740|gb|EFT41672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031750|gb|EFT43682.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315034176|gb|EFT46108.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315144686|gb|EFT88702.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147999|gb|EFT92015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315149571|gb|EFT93587.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315153125|gb|EFT97141.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315156898|gb|EFU00915.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315157685|gb|EFU01702.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315160657|gb|EFU04674.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165086|gb|EFU09103.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315168068|gb|EFU12085.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315171987|gb|EFU16004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315574289|gb|EFU86480.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315577417|gb|EFU89608.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315581638|gb|EFU93829.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480292|gb|ADX79731.1| response regulator [Enterococcus faecalis 62]
 gi|327534636|gb|AEA93470.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +   V   G  G+E     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 223

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 136/222 (61%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +A  I   L+ E + V V   GE G+++      D IILD+ L  + G 
Sbjct: 1   MRLLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQLPRLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR+LR  +ISTPV +L+  ++IEDKV GL +GADDY++KPF+  ELVAR+RA++RR  
Sbjct: 61  ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q+ +   DL+++    TV     +I LT KE+ +++      +  LT+ M   H++D
Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +IDV++  LR+K+ +    K  I TV G GY+L+
Sbjct: 181 YDFDSMTNVIDVYVNYLRRKIDSDREPK-LIHTVRGVGYMLK 221


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 132/234 (56%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V V   GE+G+       FD I+LDL L    G E
Sbjct: 4   KILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR + 
Sbjct: 64  VCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQQ 123

Query: 121 --GHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             G+ ++          IV GD+ +  +      +  R+ LT KE++++  LS  K   L
Sbjct: 124 MTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           T++  L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E
Sbjct: 184 TRDQLLSAVWNYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEE 237


>gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+ED+      +   L    F V     G DG+   +  ++  IILD+ L  + G+
Sbjct: 1   MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DILRELRRTH-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI   D+ +++  + V   G RI LT KE+ ++ +L  R    L++    + ++D
Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV + +LR KL      K  + TVWG GYV 
Sbjct: 180 MNFDSDTNVVDVAVRRLRAKLDEGF-EKKLLHTVWGMGYVF 219


>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  ++ ++ L L  E+F+V     GEDG++L +    D ++LDL L  I G  
Sbjct: 6   RVLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLPGIDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++  +   D + GL++GADDY++KP    EL ARIRA++RR+  
Sbjct: 66  VCRRVR-EHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTAS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L +  D + V   G  +HLT  E++++  L+  +   +T+E  L  ++  
Sbjct: 125 ARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWGH 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + +++DV I +LR+K+       + + TV G GY
Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGY 222


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++  L+ E F V     G DG+ L +  E+ AI+LD+ L  + G+
Sbjct: 1   MRILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR A + TP+ +L+      D+  GL  GADDY++KPF+   L+AR+RA+VRR  
Sbjct: 61  QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL +   A         I LT KE+ ++E L+ R    ++K   ++ ++D
Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +++V+I  LR+K+ +   G+  I T+ G GY+L
Sbjct: 181 TAYEGGANLVEVYIRTLRRKI-DVPYGRQAIRTIRGAGYLL 220


>gi|30023144|ref|NP_834775.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296505525|ref|YP_003667225.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29898704|gb|AAP11976.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296326577|gb|ADH09505.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 225


>gi|291302356|ref|YP_003513634.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571576|gb|ADD44541.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 221

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED + +   +   L +  F   V   G +G+      E D I+LD+GL D+ GF+
Sbjct: 3   RILIIEDSERITAFLTKGLAAAGFTPSVAHTGAEGLGRALTGEVDLIVLDIGLPDMDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LRALR A   TPV IL+   S  D+V GL  GADDY+ KPF+ +EL+ARIR  +R   G
Sbjct: 63  LLRALRAAGRDTPVIILTARDSATDRVTGLSDGADDYMPKPFSVDELLARIRLRLRPVSG 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+++  GDL ++L  + V   G ++ LT +E  +++ L       L++E  L+ ++
Sbjct: 123 GGSDQAVLRVGDLELDLRTRAVRAGGRQVELTARELSLLDTLMRNAGQVLSREQLLSRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   ++DV++  LR+K+     G + IETV G GY L +
Sbjct: 183 GFDFDPGSNVVDVYVRYLRRKI-----GADRIETVRGLGYRLTQ 221


>gi|228910935|ref|ZP_04074744.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228848886|gb|EEM93731.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 222

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E + +       +G+ +    ++D I+LD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIVLDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMTE 222


>gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++R  R
Sbjct: 61  RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLR--R 118

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  Q     I  GDL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + 
Sbjct: 119 GTVQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDSNVIDVAIRRLRAKIDDDFDAK-LIQTVRGMGYVL 221


>gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      +     ++ + V     G++G+ L K  ++D +ILD  L  + G 
Sbjct: 3   MRILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLPKLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR +   TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   + +R+ 
Sbjct: 63  TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + I  G L + L  + V +    + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +IDV I KLR+K      G+  IETV G GY L
Sbjct: 183 DYHFDPRTNVIDVHIAKLRRKFEELGHGE-LIETVRGAGYRL 223


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     + +  GGK      IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240


>gi|167622279|ref|YP_001672573.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352301|gb|ABZ74914.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 227

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F + +   G+ G++L    +FD I+LD+ L  + GFE
Sbjct: 3   RILLIDDDLGLSELLAQLLELEGFELTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR +K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR+  
Sbjct: 63  VLRALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTHS 121

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A    ++    GD++++   + V  Q   I LTG E+ ++  L        +KE+    
Sbjct: 122 QANETPLSTRQYGDINLDPARQEVHCQDQLIILTGTEFSLLFELVKSAGELASKEVLSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +  P  + +D+ +  LRKK+     G+  ++T+ G+GY+
Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERDDGRPRVKTIRGKGYI 224


>gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
 gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
          Length = 232

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD A+++ I   L+++ +  +    G   +     Y  D +ILDLGL D+ G +
Sbjct: 5   KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++ +R    + P+ ++S  +  +DKV  L +GADDY++KPF+ +E +AR+R  +RRS  
Sbjct: 65  IIKKIRSFS-TMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSHT 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   S+ V G+L ++  A  V V    +HLT  EY+++ LL+      LT    L
Sbjct: 124 EGAKPGEESSVYVNGNLKIDYAAGCVYVDSAEVHLTPIEYKLLCLLAQNTGKVLTHNYIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      ++  + VF+  LRKK+  +     YI+T  G GY
Sbjct: 184 KEVWGSTLASDIPSLRVFMATLRKKIEKSTSSPQYIQTHIGVGY 227


>gi|312888838|ref|ZP_07748401.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298713|gb|EFQ75819.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED+K+LA  +E+ L + N+   +   G+   E      +D I++DLGL D  G 
Sbjct: 1   MNVLIVEDEKSLARELEIFLVNCNYVCEICYDGKSASEKIAINLYDFILIDLGLPDYDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  +         IL+  + + D+++GL  GADDY+ KPF+  EL +R++AI RR  
Sbjct: 61  DLLKEAKTYNAEAACLILTARAEVYDRIKGLDLGADDYLPKPFSMLELQSRMQAITRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   + +  G+  ++++ +++   G+ +  +T KEY +I  L L KN TLT+     H++
Sbjct: 121 GLKHTTLTLGEFLIDMNDRSISHNGNMVTSITKKEYDLIAYLILHKNRTLTRPQLSEHIW 180

Query: 180 DG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                D+ +   IDV I  +RKKLS A    +++ETV G GY ++
Sbjct: 181 GSVVNDDYDSNYIDVHIKNIRKKLS-AYAQPDWLETVRGLGYKIK 224


>gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3]
 gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella sp. ANA-3]
          Length = 226

 Score =  130 bits (327), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR++ ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S      LS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+ N    K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYETK-LIQTVRGVGYML 221


>gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 131/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  +   ++  L    + V+  + G    EL   + +  +I+DLGL D  G 
Sbjct: 1   MRLLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR + +++PV ILS   S++D+V+GL+ G DDY++KPF   EL+AR+R ++RR+ 
Sbjct: 61  DLILQLRRSGVTSPVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+    +   DL +++  +        ++L+ +E+ ++E L       +T+ M L  +
Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  R +P+  ++DV I +LR K+ + AG +  I+T+ G GYVL+
Sbjct: 181 WGMRIQPDTNVVDVHIYRLRGKI-DTAGREPLIKTLRGIGYVLK 223


>gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
 gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L ++I   LK   + V     G D +E+ +   +D I+LDL L ++ G 
Sbjct: 1   MKILIVEDEKILNNTINKSLKDAGYEVESAFDGFDAMEMIEIESYDLIVLDLNLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   + T V ILS  S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ 
Sbjct: 61  EILKNLRKEDVETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    +  +   +T+ ++   + LT KE  ++E L L +   +++E  ++H++D
Sbjct: 121 IQNNTELSFDKIKFDSKNRTIFIEDKELKLTRKESGILEYLLLNQGRPVSQEELIDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     I V I  LRKKL     G + IE   G GY+LR+
Sbjct: 181 SSVDLLSNSIRVHISALRKKLKQEL-GYDPIENRIGIGYLLRK 222


>gi|322418159|ref|YP_004197382.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320124546|gb|ADW12106.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M  L+IED +  A  +   L   + N  +   G  G+ + K  +++ IILDL L  I GF
Sbjct: 1   MNFLIIEDSEKTAEQLRKGLAEVSINADIAGDGLRGLAMAKEKDYELIILDLMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR A  STPV +L+    + D++ GLQSGADDY+ KPF+  EL ARI+A++RR +
Sbjct: 61  EVVKRLRSAGKSTPVIMLTARDDVHDRICGLQSGADDYMVKPFSFGELCARIQALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I   DL+VN  A+     G  + LT KE+ ++ +L  R     ++      +++
Sbjct: 121 VLQQDEIQVADLTVNFFARKATRGGKHLELTPKEFALLSMLIRRAGEVQSRLRIAETVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  +KI+DV +  LR K+ +    K  I TV G GYVL +
Sbjct: 181 LGFDANLKIVDVKLAGLRAKV-DGPFEKKLIHTVRGVGYVLED 222


>gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 229

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + +      V   D   D  E   F      D  I+DLGL D 
Sbjct: 1   MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMSMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + + G  I LT  EY +IE L   K   ++KE  +  
Sbjct: 118 RNSGLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218


>gi|229124627|ref|ZP_04253812.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228658967|gb|EEL14622.1| DNA-binding response regulator [Bacillus cereus 95/8201]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS   
Sbjct: 61  CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQHDTTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L  ++F   + D G D + + + ++ D +ILDLGL  + G E
Sbjct: 19  RALVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRRLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRRPRA 137

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G   + +  G L +++ A+ V + G  I LT  E+ ++  LS R    L++
Sbjct: 138 TPERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPGVVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  + +G       ++DV I  +R+KL +      Y+ TV G GY
Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGY 245


>gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 221

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/201 (34%), Positives = 120/201 (59%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED K +  ++  +L+ E + V     G + +E      +D +ILD+ +  + G 
Sbjct: 1   MKILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R  KI TPV +L+  + I+DKV GL +GADDY++KPF+ +EL+ARIRA+VRRS 
Sbjct: 61  EVIREARNRKIVTPVLLLTAKAEIDDKVAGLDAGADDYLTKPFSIKELLARIRAMVRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +  +   D+ +  D   + + G+ + L+ KE++++  L L  +  +  E  L+H++ 
Sbjct: 121 DYTEQDLQFRDIRLKADGMEL-IAGNSVRLSQKEFELMRQLILNADHPVDTEFLLSHIWP 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              E E   + ++IC L++KL
Sbjct: 180 REPEAESDTVWLYICYLKRKL 200


>gi|312867634|ref|ZP_07727840.1| putative response regulator ArlR [Streptococcus parasanguinis
           F0405]
 gi|311096697|gb|EFQ54935.1| putative response regulator ArlR [Streptococcus parasanguinis
           F0405]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 132/230 (57%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G+L VNL   +  V    + L GKE+ ++      +N  L K    + L+ 
Sbjct: 121 KVNENTLNYGNLKVNLSTNSTYVDDKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRENAKD 227
              +  + +++V++ K+RKKL     G +++E   T+   GY+L++  KD
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKDANKD 226


>gi|52140441|ref|YP_086387.1| response regulator [Bacillus cereus E33L]
 gi|51973910|gb|AAU15460.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLMEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TPV I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPVIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NLQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata
           HTCC2501]
          Length = 229

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ A+A  +   L+   + V V   GE G+E+ +  +FD +ILD+ L  + G E
Sbjct: 4   RILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMDGRE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R   +  P+ +L+ + S E+ VRGL SGADDY+ KPF  +EL AR+RA+ RR  S
Sbjct: 64  VARTIRGQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALSRRRSS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G+L ++ DAKTV      IHLT  EY+++E L L KN  L++   L  ++
Sbjct: 124 GPRGNRTLSAGNLVLDRDAKTVRRGEADIHLTATEYRLLEYLLLNKNRVLSRIDILESVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D        ++DV++  LR K+      K  I TV G GY L++N
Sbjct: 184 DITFNLGTNVVDVYVNYLRNKIDKPFDSK-LIHTVIGMGYTLKDN 227


>gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
 gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
          Length = 231

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 119/203 (58%), Gaps = 4/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL ED+K L+ +++ +L+S  ++V     GED I   +  E+DA+ILD+ +  + G 
Sbjct: 4   MKLLLAEDEKELSKALKAILESNRYSVDAVYDGEDAIYYMENSEYDAVILDIMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R   I  P+ +L+  S ++DKV GL SGA+DY++KPF+ +EL+AR+R + R   
Sbjct: 64  TALKTVREKGIDVPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLRVLTREKS 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S+I  G++S  LD  T E+     +  LT KEYQM+E+        ++ E  +  +
Sbjct: 124 VSNTSIITVGNVS--LDTTTFEMYSPNGKFRLTNKEYQMMEIFMRNPKHIVSTEQLIEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKL 201
           +    + E  ++ V+I  LRKKL
Sbjct: 182 WGYDSDMENNVVWVYISYLRKKL 204


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + L++E F V     G + + L    ++D +ILDL +  + G+ 
Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +L+   +  D++ GL+ GADDY+ KPF+  ELVAR++A++RRS+ 
Sbjct: 188 VCREVR-KTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G    L   G LS+N +++ V V    ++LT KEY M+ L++   + T T+E 
Sbjct: 247 APPAAQDGKPVVLNYPG-LSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREE 305

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  ++      + + +D  + +LR KL  A+G ++YI TVWG GY
Sbjct: 306 LIESVWGYDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGY 351


>gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+   +  ++  L+   F+V +   G +G+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MHILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A  +TPV  L+    + D+VRGL+ G DDY+ KPF   E +AR+R + RR  
Sbjct: 61  AVLKVLR-ATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL  R+   L++    ++++D
Sbjct: 120 PRESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR K+ +A   K  I+TV G GYV+   AKD
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIQTVRGVGYVI--EAKD 223


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K L   I+  L+SE + V     GE+ +EL +   FD IILDL +  I G 
Sbjct: 12  MKILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGL 71

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +    +R+ + S  P+ +L+  S   DK+ G + GADDYI+KPFN  EL AR+RA++RR+
Sbjct: 72  QA--CMRIREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRA 129

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              AQ    + +  G + ++ D ++       + LT KE+ +IELL        ++E  L
Sbjct: 130 GMAAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLL 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           N ++      + + +DV + +LR+KL        YI T WG GY  + +
Sbjct: 190 NVVWGYEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYFKNS 238


>gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+ + F V   + G DG++L K  EFD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTITLLQYQQFAVQWVNNGIDGLKLLKTQEFDIVLLDLGLPLMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R  K + PV I+S    + ++V GL  GADDY+ KP+  +EL+ARI+A++RRS  
Sbjct: 63  VLKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRSTI 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     ++  GDL ++L+  +   +   I L+ +E+ ++  L        ++    +
Sbjct: 123 TSIQTETVQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLED 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   E     I+V+I  LR KL     GK++I T+ G GY L
Sbjct: 183 KLYDIDSEINSNTIEVYIHHLRTKL-----GKDFIRTIRGLGYRL 222


>gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
 gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L  +I   L+ + + V     GE   ++     +D IILDL L  + G 
Sbjct: 1   MRILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R+    T + ILS    ++DK+ GL  GA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 61  KVLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++S++  A+T   +G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 VQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +     I V I  LRKKL  AA G + I    G+GY++
Sbjct: 181 GSVDSFSNSIRVHISALRKKL-RAALGYDPITNRIGQGYLI 220


>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 124/217 (57%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E ++V VT  G + ++  +  + D ++LDLGL ++ G EV
Sbjct: 4   VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++R  RG 
Sbjct: 64  ARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGG 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +V G + ++ D++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 122 GEVPVVHG-VRIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                K +D+ I  LR+KL + A   +YI TV G G+
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGF 217


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S +FN Y  +L  DG+E          DA++LD+ +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    A+S+ +   DL+++   + V     RI LT  E+ ++E+L       LT+   
Sbjct: 118 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228


>gi|257465593|ref|ZP_05629964.1| two component transcriptional regulator [Actinobacillus minor 202]
 gi|257451253|gb|EEV25296.1| two component transcriptional regulator [Actinobacillus minor 202]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   LK  ++ V   + G+   E      +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K STPV I++    ++ ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +   +  G ++++  +  VE+ G    I L+ KE+ ++  L  R    L++    + +
Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ID  I  LRKK+     GK  I+ V G G+++
Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKI-----GKEQIKNVRGVGWMM 218


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+  
Sbjct: 120 FKKYNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGY 226


>gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 228

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 138/233 (59%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL +ED+ ++A ++  +LK ++++V +   GE G++      +D ++LD+ L  I G 
Sbjct: 1   MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDILVLDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   I TP+ +L+  S ++DKV GL +GADDY++KPF  +EL+ARIR++ RR  
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLGRRKD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  +  G++ ++ +   +    +++ L+ KE +++EL   R    L+KE  +N ++
Sbjct: 121 LDYQEDQLAFGNVGLDRNELQLATPSNQVVLSPKEMKLMELFLARPKVILSKETIINKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230
               + E   +++++  LRKKL+   A  G   I T+   GY+L+  +K+  C
Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPPC 228


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +++ +    D ++LDL L  + G E
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCRQVR-AESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++   TV     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGY 220


>gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
 gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
          Length = 232

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I   LK+ N+       GE  I     +  D I+LDLGL DI G E
Sbjct: 5   QILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDIDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V++ +R    +TP+ ++S  +   DK+  L +GADDY++KPF+ +EL+AR+R  VRR   
Sbjct: 65  VIKKIRTWT-NTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTVRRLSL 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S+   GDL ++  A    + G  +HLT  EY+++ LLS      LT     
Sbjct: 124 MQTDMTQNTSVFENGDLKIDYAAGCAYLNGEELHLTPIEYKLLILLSRNVGRVLTYTYIT 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++    E ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 184 KNIWGSSWENDLASLRVFMATLRKKIEKDVNSPQYIQTHIGIGY 227


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 20  ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 80  CRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 139

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 140 EPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQRL 199

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 200 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 242


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+ ++ + GE  +     +  + I+LDL L  + G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-QKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124

Query: 122 H-AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + A +   +G      DL++NL   +V   G ++ +  KE +++  L+   N   T+E  
Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 LDHIWGYEYIGDTRTVDVHIKRLREKIKDHPSWA--LSTVWGIGY 227


>gi|125623601|ref|YP_001032084.1| two-component system regulator llrF [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|4104695|gb|AAD02113.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492409|emb|CAL97351.1| two-component system regulator llrF [Lactococcus lactis subsp.
           cremoris MG1363]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L+ S+   LKS      V D G +G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVL+ LR   + TPV I++   S++DK+ G   GADDY++KPF  +EL ARI+A+++R+ 
Sbjct: 61  EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +  G++ +NL  K+  V    + L GKE+ ++  L   +N  L KE   + ++
Sbjct: 121 KLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  V +++V++ K+RKKL +     N + T+   GY+LR
Sbjct: 181 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 222


>gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 117/205 (57%), Gaps = 4/205 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KALA +++ +L+  N++V     GE  +E      +D IILD+ +    G 
Sbjct: 1   MRLLLAEDEKALAKALKAILERSNYSVDAVYDGEAALEYMAAGNYDGIILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+    ++DKV GL +GA+DY++KPF+ +EL+AR+RA+ R   
Sbjct: 61  TVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLARLRAMTRVQM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S +  G+  V LD  T E+   +  I L  KEYQM+E L       ++ E F   +
Sbjct: 121 ESEDSQLKAGN--VTLDRATFELTTPKGSIRLANKEYQMMEFLMSNPGHLISSERFFEKI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203
           +    E E+ ++ V++  LRKKLS+
Sbjct: 179 WGYDSEAELNVVWVYLSNLRKKLSS 203


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V ++G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|229094210|ref|ZP_04225289.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228689202|gb|EEL43024.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS   
Sbjct: 61  CRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSNCN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GYNVVVNPNVVDLYIGYIRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|225569324|ref|ZP_03778349.1| hypothetical protein CLOHYLEM_05406 [Clostridium hylemonae DSM
           15053]
 gi|225162123|gb|EEG74742.1| hypothetical protein CLOHYLEM_05406 [Clostridium hylemonae DSM
           15053]
          Length = 237

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+IED+  LA  ++  L    +   V   GE G       ++D I+LDL L D  GF
Sbjct: 16  VRLLIIEDNTELADLMKGKLSGFGYVCDVAYDGESGDLKASDNDYDVILLDLNLPDRDGF 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R   IS PV I++    +E +V+GLQ G+DDYI+KPF   EL ARI+A++RR R
Sbjct: 76  ELLENWRSQGISAPVFIVTARGELEQRVKGLQLGSDDYITKPFEFTELDARIQAVIRRFR 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I+  +LS++   + V + G  + L+ KE+ ++E L+      ++ E    H+YD
Sbjct: 136 GRANPVILIEELSLDPATRRVTLDGREVPLSAKEFDILEYLASCYPRIVSNEELAEHVYD 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +I V +  ++KKL    G  + +    G+GY L
Sbjct: 196 ENFDPFSGVIRVHMANIKKKLK--MGDTSILRNEKGKGYYL 234


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L +DG+E   L      DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+    G     +   DL+++   + V     +I LT  E+ ++E+L       LT+   
Sbjct: 120 RTSPDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LR+K + A+G    I TV G GYVLRE   
Sbjct: 180 LEEVW-GFDFPTSGNALEVYIGYLRRK-TEASGEPRLIHTVRGVGYVLRETPP 230


>gi|296102481|ref|YP_003612627.1| Transcriptional regulatory protein qseB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056940|gb|ADF61678.1| Transcriptional regulatory protein qseB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L + + + L  +  +V      ED +        + I+LDLGL D  G 
Sbjct: 1   MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKEDALHQLAVCAPELILLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  SLMAYVRQQLKGIPVIILTARETLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+    +    LS+++  + V V    I LT  EY ++E L LR +  LT+  FL     
Sbjct: 121 GYQNEAVEIRGLSLHVPTRRVTVSSRHIELTASEYALLETLMLRADRVLTRR-FLEERIF 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G  Y+ TV G GYV+
Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +++ +    D ++LDL L  + G E
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  +   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCRQVR-AESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++   TV     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGY 220


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   ++  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  +LD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + L+   DLS+N   + V      + LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR KL      K  + TV G GY LRE
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEE-NNEKRLVHTVRGVGYALRE 224


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +   +DA++LDL L  I G E
Sbjct: 6   RVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A SL + G +S++  A+T EV G R+ LT +E+ ++   +   +   ++   
Sbjct: 126 LERNARIDAGSLALHG-VSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++  + E     ++  I +LR K+         I TVWG+GY
Sbjct: 185 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGY 229


>gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D ++LDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASELEQPVIETDTFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL +      ++ T  G GY   E
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFEE 226


>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
           [Zunongwangia profunda SM-A87]
 gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
           protein [Zunongwangia profunda SM-A87]
          Length = 222

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  ++  ++  L+ E+F V + D G+ G+EL    ++D ++LD  L  + G 
Sbjct: 1   MRILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R  R     TPV  L+   ++++ + GLQSGA+DYI KPF+ EEL+ RI+  +R   
Sbjct: 61  EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++   G + +N         G  ++LT KE+ ++E L   K    T+   +  ++D
Sbjct: 121 GE-HAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LR+KL +    +NYI+TV G GY+ +E+
Sbjct: 180 INFSYNTGVIDVYINALRRKL-DLDQDENYIQTVRGVGYIAKES 222


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 12  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 72  VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 192 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 229


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 52  KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 112 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR
Sbjct: 231 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 278


>gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
 gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
          Length = 228

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD A A  +   +    F V   D G DG+ L     + AIILD  +  + G  
Sbjct: 4   KILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ALR A+I TPV ILS + + ED+V GL SGADDY++KPF   EL+AR++ ++RR   
Sbjct: 64  MLKALRAAEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGG- 122

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +VT     DL ++L ++ V+     + L  +E++++E      +  +T+ M L  
Sbjct: 123 -GGGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEG 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +IDV + +LR+KL +  G +  + TV G GY L
Sbjct: 182 VWDYHFDPGTNVIDVHVSRLRRKLDD-GGDRPLLHTVRGMGYRL 224


>gi|225163853|ref|ZP_03726148.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801534|gb|EEG19835.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   +E  L  +++   +        +       DAI+LDLGL D  G 
Sbjct: 1   MKILIVEDERKVGQFVERALAEQHYTTRLVMTCAAARDALAESPADAIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R A  + PV ILS   ++ D++ GL  GADDY+ KPF+ +EL+AR+R+++RR  
Sbjct: 61  ALLREWRAAGFNEPVLILSARDAVSDRILGLNLGADDYLPKPFSIDELLARVRSLLRRHA 120

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  + V     + LD  A+T   QG  + LT +E+ ++EL        LT+ +    +
Sbjct: 121 SPSAKVTVLEHRGIRLDLLARTATAQGRPVELTNREFALLELFLQNTGRVLTRTLIAEKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGY 219
           ++   + E  +IDV++ +LR+K   +A        I+TV G GY
Sbjct: 181 WEDSYDMETNLIDVYVRRLRQKFEPSASDAFSPPLIKTVRGTGY 224


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++E+++ LA  +EL LK E ++V V   G  G    + +  D II++  L  + G E
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++    +E++V GL +GADDYI KPFN +E  ARIR  +RR+  
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++   DL  N   + ++     I LT KE+++++ L       LT+E  L  ++  
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR KL  AAG    I+TV G GYVLR+
Sbjct: 184 DFMGDSNIIEVYIRYLRLKL-EAAGEPRLIQTVRGVGYVLRD 224


>gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ LA  I   + +E + V V   G  G+ L +   +D IILD+ L  + GF
Sbjct: 1   MKILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNLPHMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R    + PV +L+ + S+ DK  G  +GADDY++KPF  +EL+ R+RA+ RR  
Sbjct: 61  DLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++   DL +NLD+KTV   G RI LT +EY ++E + L K   +++      ++ 
Sbjct: 121 SRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    +IDV++  LRKK+      K  + T+ G GYVLRE+
Sbjct: 181 LNFDNNSNVIDVYVSYLRKKIDKGFSPK-LLHTIVGMGYVLRED 223


>gi|22537145|ref|NP_687996.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           2603V/R]
 gi|25011074|ref|NP_735469.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           NEM316]
 gi|76787511|ref|YP_329701.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909]
 gi|76797790|ref|ZP_00780056.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae
           18RS21]
 gi|77405694|ref|ZP_00782781.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B]
 gi|77409201|ref|ZP_00785911.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1]
 gi|77411995|ref|ZP_00788324.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           CJB111]
 gi|77413624|ref|ZP_00789810.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515]
 gi|22534008|gb|AAM99868.1|AE014237_2 DNA-binding response regulator CiaR [Streptococcus agalactiae
           2603V/R]
 gi|23095473|emb|CAD46679.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562568|gb|ABA45152.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909]
 gi|76586866|gb|EAO63358.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae
           18RS21]
 gi|77160333|gb|EAO71458.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515]
 gi|77161951|gb|EAO72933.1| DNA-binding response regulator CiaR [Streptococcus agalactiae
           CJB111]
 gi|77172177|gb|EAO75336.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1]
 gi|77175690|gb|EAO78472.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B]
 gi|319745016|gb|EFV97344.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 226

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD +L++S+   L      + + D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLIEDDLSLSNSVFDFLDDFADVMQIFD-GEEGLYEAESGVYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I+TPV I++   SI+DK +G   GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKGITTPVLIMTAKESIDDKGQGFDLGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + ++ GD+ V++   +  V    + L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KFNDNSLIYGDIRVDMSTNSTFVNQTEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +  + +++V++ K+RKKL      +N ++T+   GY+L+    D
Sbjct: 181 FDSDTTISVVEVYVSKVRKKLKGTLFSEN-LQTLRSVGYILKHVETD 226


>gi|322389246|ref|ZP_08062806.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143990|gb|EFX39408.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 251

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 27  IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 86  HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 145

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G+L VNL   +  V G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 146 KVNENTLNYGNLKVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 205

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRE 223
              +  + +++V++ K+RKKL     G +++E   T+   GY+L++
Sbjct: 206 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKD 247


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
          Length = 241

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 130/237 (54%), Gaps = 7/237 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  +     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR  +   PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++R  R
Sbjct: 61  RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLR--R 118

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G AQ     I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + 
Sbjct: 119 GTAQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYL 233
           ++D   + +  +IDV I +LR K+ +    +  I+TV G GYVL    A DE    L
Sbjct: 179 VWDMNFDSDSNVIDVAIRRLRAKIDDGFDAR-LIQTVRGMGYVLEAPEAADEAGAPL 234


>gi|13474809|ref|NP_106379.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14025565|dbj|BAB52165.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++EDD   A  I     +  F V     G DG+   K   FD I LD  L  + G 
Sbjct: 2   IKVLVVEDDADTADEIVDEFCAAGFEVERAATGPDGLTKAKTQAFDVITLDRLLPGLDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   + TPV +LS +SS+++++RGL++G DDY+ KPF+  EL  RI  + RR+ 
Sbjct: 62  SLLENLRGGGVDTPVMVLSALSSVDERIRGLRAGGDDYLVKPFSLAELRTRIEVLARRTP 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +TV      + L  +E  ++E L       +T+ M   H++ 
Sbjct: 122 DQRATVLRLADLELDLLTRTVRRGTRIVELVPREITLLEYLLRHAEQVVTRGMLFEHVWH 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R +P   ++DV I +LR+K+ + A     I T+ GRG+VLR
Sbjct: 182 YRFDPGTNLVDVHIGRLRRKI-DLADELPLIHTIRGRGFVLR 222


>gi|183219817|ref|YP_001837813.1| transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189909952|ref|YP_001961507.1| two component response regulator sensor protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774628|gb|ABZ92929.1| Sensor protein of a two-component response regulator [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778239|gb|ABZ96537.1| Transcriptional regulatory protein CreB [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 225

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 131/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+  +  +I++ L++E F++ +   G  G+++    +   I+LD+GL D  GF
Sbjct: 2   IKILLIEDEPGIQETIQIALEAEGFSLSIAPTGIQGLQMLA-DDISLILLDIGLPDQSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+++R A  S PV  L+  SS  DKV GL+ GADDYI KPF+  EL+ARIRAI+RR++
Sbjct: 61  EVLKSIRKAA-SIPVIFLTARSSEIDKVLGLEIGADDYIVKPFSPRELLARIRAILRRTQ 119

Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                L++       L ++LD K V   G  ++L+  EY+ +EL         T+E  ++
Sbjct: 120 N---PLVLEQKSNQKLRISLDKKLVYYNGKNLNLSPYEYKTMELFFKWPGRIFTREEIMD 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++   ++   + +D  I  +R +        + IET  G+GY L+E 
Sbjct: 177 SVWTEPEDSFDRAVDTVIKNIRARFKEMDPNFDPIETRRGQGYGLKET 224


>gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLT-DIP 58
           M+IL++ED+ ++   + L LK E ++V     GE+ IEL  K  + +  +LD+ L   I 
Sbjct: 1   MKILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+VL+ +R    +  + +L+  ++ EDKV GL+ GADDYI+KPF+ +EL+ARIRA++RR
Sbjct: 61  GFDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRR 120

Query: 119 SRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        + +G+ ++N   +        I LT KE++++EL    K  +L+++ 
Sbjct: 121 VTSIDMVKEEVEKVHSGEFTLNFSERKFFKGEEEIELTPKEFEILELFMKNKGKSLSRDE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++      ++K++DV I ++R K+   +   +Y++TVWG GY   E+
Sbjct: 181 ILDRIWGKNYYGDLKVVDVNIRRIRMKIEKDSSNPSYLKTVWGYGYRWEED 231


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LTG E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|228923822|ref|ZP_04087100.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835951|gb|EEM81314.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         ++D++I  +RKKL      + YI+T+ GRGY +
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 223


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPG 59
           RIL++ED+  +     + LK   + V     GE+ I++ +     FD  +LD+ +  + G
Sbjct: 3   RILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FEV R +R    S  + +L+  S   DKV GL  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  FEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 ++  A S + +G   +N+ ++TV   G  + LT  EYQ++E      NT L ++
Sbjct: 123 TVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQ 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             LN ++      ++KI+DV I +LR KL +A     ++ TVWG GY
Sbjct: 183 DILNKVWGEGYFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGY 229


>gi|315173321|gb|EFU17338.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +   V   G  G+E     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQVK-NTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|296876734|ref|ZP_06900782.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
 gi|296432236|gb|EFH18035.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           15912]
          Length = 251

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L++S+   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 27  IKILLVEDDLGLSNSVFDFLDDFADVMQVFD-GEEGLYEAESGIYDLILLDLMLPEKDGF 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 86  HVLKELREKGVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 145

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G+L VNL   +  V G  + L GKE+ ++      +N  L K    + L+ 
Sbjct: 146 KVNENTLNYGNLKVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG 205

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE---TVWGRGYVLRE 223
              +  + +++V++ K+RKKL     G +++E   T+   GY+L++
Sbjct: 206 FDSDTTISVVEVYVSKIRKKLK----GTDFVESLQTLRSVGYILKD 247


>gi|167565429|ref|ZP_02358345.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia oklahomensis
           EO147]
 gi|167575130|ref|ZP_02368004.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia oklahomensis
           C6786]
          Length = 232

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 133/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GE+G  +   Y++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEAKVVDYLKSGLADEGWVVDAATDGEEGAWMAVEYDYDVVVLDVMLPKVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR A   TPV +L+    ++D+VRGL+ GADDY++KPF+  ELV R+RA+ RR+R
Sbjct: 61  GVLRALR-AHRDTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELVERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L ++     G R+ LT +E+Q++ +L+ R+   L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGVRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    +++  I +LR KL      K  + T+ G GYVL E A
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEERA 223


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 14  RVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 74  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A SL + G L ++   +   V G RI LT +E+ ++   + R     ++   
Sbjct: 134 MAKDARMEAGSLNLAG-LFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++  + E     ++  I +LR K+ +       I TVWGRGY
Sbjct: 193 LNAVWGYQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGY 237


>gi|29828737|ref|NP_823371.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605841|dbj|BAC69906.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 262

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 18/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E ++      GE+ + L   +  D ++LDL L DI GF
Sbjct: 19  VRLLVVDDDPPIADLVATVARYEGWDAVTAYSGEEALRLAAEFPPDIVVLDLMLPDIDGF 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +    PV  L+   ++ D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 79  GVLDRLRRSGTMVPVVFLTARDTVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 138

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +S++   DL+++ D + V      + LT  EY+++  L  +    LTK   L+H+
Sbjct: 139 GPGFQRSVLRVADLTMDEDTRQVRRGDRLLTLTPTEYEVLRYLMRKSPAVLTKAQILDHV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKL----------------SNAAGGKNYIETVWGRGYVLR 222
           ++        ++++ + +LR+KL                +  AG +  I TV G GYV+R
Sbjct: 199 WEYGFGGRSNVVELVVSRLRRKLDEADAADAGDVAAEDSAADAGREPLIHTVRGFGYVIR 258

Query: 223 ENAK 226
             A+
Sbjct: 259 PAAR 262


>gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++ ALR A    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   + +   DLS++L ++ V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNGFDTALKLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L
Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222


>gi|47567331|ref|ZP_00238044.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555952|gb|EAL14290.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D ++LD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R +    PV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  GVLQTVRRSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +   GDL ++L  + V   G +I LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDPFEPK-LIRTVRGMGYVL 220


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 126 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|309776804|ref|ZP_07671778.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915552|gb|EFP61318.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++ LA  +   L +  F       GE   +      +DA +LDL L D  GF
Sbjct: 1   MRLLVIEDNRELATLMTEQLHTFGFVCDSAHDGETADQKIHDTAYDAALLDLNLPDTDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L++ R   + TPV I++    ++++V+GLQ G DDYI+KPF  EEL ARI+A++RR R
Sbjct: 61  DLLKSWRNQAVDTPVLIVTARDDLDERVKGLQLGGDDYITKPFEFEELSARIQAVIRRFR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I    L +N  +++V +  H+I L+ KEY ++E ++ +    ++      H+YD
Sbjct: 121 GRPTADIKVEGLIINPASRSVSLDHHKILLSPKEYDILEYIASQHPRVISNYEIAEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +I V +  +RKKL      K+ +    G+GY L
Sbjct: 181 EDFDPFSGVIRVHMANIRKKL--MLDRKSILCNEKGKGYYL 219


>gi|294341285|emb|CAZ89694.1| Transcriptional regulatory protein cusR [Thiomonas sp. 3As]
          Length = 251

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L+   F V     G DG        +D I+LD+ L DI G+
Sbjct: 25  MKLLIVEDEVKTGEYLQQGLRESGFVVDWARNGLDGHHHAMIAPYDLIVLDVMLPDIDGW 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR+LR +  +TPV  L+   ++ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 85  RILRSLRESGNNTPVLFLTARDAVEDRVKGLELGADDYLVKPFVFTELLARVRTLLRRGR 144

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DL ++L  +     G RI+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 145 APTQIDQLEVADLVLDLPRRRATRAGTRINLSSKEFALLELLIRRQGEVLPRSLIASQVW 204

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GY L
Sbjct: 205 DMNFDSDTNVIDVAIRRLRAKVDDGFEPK-LIQTVRGMGYTL 245


>gi|30265130|ref|NP_847507.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530640|ref|YP_021989.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187941|ref|YP_031194.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317076|ref|ZP_00390035.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869987|ref|ZP_02214644.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641774|ref|ZP_02400016.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689385|ref|ZP_02880578.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190569222|ref|ZP_03022118.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817862|ref|YP_002817871.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603464|ref|YP_002869323.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686468|ref|ZP_05150327.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724467|ref|ZP_05186251.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735675|ref|ZP_05193382.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744239|ref|ZP_05201919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750967|ref|ZP_05203006.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254756991|ref|ZP_05209019.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259807|gb|AAP28993.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505788|gb|AAT34464.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181868|gb|AAT57244.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714310|gb|EDR19830.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510257|gb|EDR85661.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170666681|gb|EDT17451.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190559662|gb|EDV13651.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227004971|gb|ACP14714.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267872|gb|ACQ49509.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSGC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + H  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|260462544|ref|ZP_05810751.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031740|gb|EEW33009.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  L  ++   + ++   V + T LG  G  L +   ++ ++LDL L D  G
Sbjct: 1   MRVLLIEDDPVLGEAVRDHIAADGHAVDWSTTLGGAGDHL-RVVSYELVLLDLHLPDGKG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E L+ LR     TPV IL+    + D++ GL SGADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LEFLKTLRRKGADTPVIILTARDQLSDRIAGLNSGADDYLVKPFHLGELSARLAAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  G L ++  A+ V V G    LT +E+ ++E    R   T+ K    + LY
Sbjct: 120 AGNPNPLVRLGLLEIDQAARRVVVNGAEAMLTSREWAVLEQFLRRPGMTIGKNQIEDALY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   ++V++ +LRKK+     G+  + TV G GY L
Sbjct: 180 AFGAEIESNTVEVYVSRLRKKI-----GRGALTTVRGLGYRL 216


>gi|69247350|ref|ZP_00604314.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227550602|ref|ZP_03980651.1| response regulator [Enterococcus faecium TX1330]
 gi|257880266|ref|ZP_05659919.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883065|ref|ZP_05662718.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257888626|ref|ZP_05668279.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891351|ref|ZP_05671004.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893652|ref|ZP_05673305.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896996|ref|ZP_05676649.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898937|ref|ZP_05678590.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|258614457|ref|ZP_05712227.1| DNA-binding response regulator [Enterococcus faecium DO]
 gi|260560436|ref|ZP_05832610.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208954|ref|ZP_05923359.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289565234|ref|ZP_06445686.1| response regulator CsrR [Enterococcus faecium D344SRF]
 gi|293378688|ref|ZP_06624846.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293556340|ref|ZP_06674922.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|293560677|ref|ZP_06677161.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|293569250|ref|ZP_06680548.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|293571128|ref|ZP_06682167.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|294615033|ref|ZP_06694922.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|294618641|ref|ZP_06698179.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|294623216|ref|ZP_06702091.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|314937954|ref|ZP_07845267.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314940986|ref|ZP_07847888.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314947557|ref|ZP_07850969.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314953136|ref|ZP_07856091.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993016|ref|ZP_07858410.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995301|ref|ZP_07860411.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194873|gb|EAN09345.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227180310|gb|EEI61282.1| response regulator [Enterococcus faecium TX1330]
 gi|257814494|gb|EEV43252.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818723|gb|EEV46051.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257824680|gb|EEV51612.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827711|gb|EEV54337.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830031|gb|EEV56638.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833561|gb|EEV59982.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836849|gb|EEV61923.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260073438|gb|EEW61766.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260076993|gb|EEW64715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289163055|gb|EFD10903.1| response regulator CsrR [Enterococcus faecium D344SRF]
 gi|291587956|gb|EFF19806.1| DNA-binding response regulator [Enterococcus faecium E1071]
 gi|291592164|gb|EFF23784.1| DNA-binding response regulator [Enterococcus faecium E1636]
 gi|291595114|gb|EFF26453.1| DNA-binding response regulator [Enterococcus faecium E1679]
 gi|291597373|gb|EFF28549.1| DNA-binding response regulator [Enterococcus faecium U0317]
 gi|291601508|gb|EFF31778.1| DNA-binding response regulator [Enterococcus faecium E1039]
 gi|291605351|gb|EFF34801.1| DNA-binding response regulator [Enterococcus faecium E1162]
 gi|291608810|gb|EFF38093.1| DNA-binding response regulator [Enterococcus faecium E980]
 gi|292642616|gb|EFF60768.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|313590486|gb|EFR69331.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592467|gb|EFR71312.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594804|gb|EFR73649.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313600178|gb|EFR79021.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642677|gb|EFS07257.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313646000|gb|EFS10580.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +N  V   G  G++     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNAEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL ++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLK---TQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+  
Sbjct: 120 FKKYNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|257885311|ref|ZP_05664964.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257821163|gb|EEV48297.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 228

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +N  V   G  G++     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGNEVIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     + +  GGK      IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIRE 240


>gi|327402249|ref|YP_004343087.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317757|gb|AEA42249.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +  SIE  LK EN  V       D ++    YE+D I+LD+ L D  G 
Sbjct: 1   MKILVVEDEPEMLESIERALKQENALVESATNLNDALDKALIYEYDCILLDINLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ L+    S  V ILS  +S++DK+ GL  GADDY++KPF+  EL+ARIR+IVRR +
Sbjct: 61  ELLQELKNQGKSDGVLILSARNSLDDKLEGLNLGADDYLTKPFHFSELIARIRSIVRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               +L   G+L V++  + + + G  I L  KE+ +   L   K   ++K     H++ 
Sbjct: 121 FDGNALFEIGNLQVDITNQALSMNGEPIVLNRKEFAIFMYLVSNKGRLVSKTALAEHVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D  DE +  + I   I  LRKK++    G   I++++G GY L E+
Sbjct: 181 DNIDESDNFEFIYSQIKNLRKKMNEMDTGLE-IQSIYGVGYKLIES 225


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ I + K  E+D ++LD+ L    GFE
Sbjct: 3   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R      P+ +++      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 63  VCQAIREFS-EMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAK 121

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   +  ++  GDL ++ D++ V +    I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 KSKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREEL 181

Query: 175 LNHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LRFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYFR 231


>gi|210614641|ref|ZP_03290252.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787]
 gi|210150631|gb|EEA81640.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787]
 gi|295108131|emb|CBL22084.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           ++ILL+EDD  L  SI+  LK E ++V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 2   IKILLMEDDLNLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIID 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++A+R  +I  PV I++GMS+++D+V GL SGADDY+ KPF+  EL+AR+RA+ RR
Sbjct: 62  GLTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR 121

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++   DL  +   + V   G  + LT KE +++ +L  +  T+ ++E  +  
Sbjct: 122 PQQIQEMGMLSYADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E   +D +I  LRK+L      K  I T++G GY L
Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELH-SKCAITTIYGSGYRL 224


>gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+  +A  I+  L +  F   V    +  I       FD +ILDLGL D  G +
Sbjct: 3   KILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGLPDKDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ IL+    I DKV GL+ GADDY++KPF  EEL+AR+R  +R++  
Sbjct: 63  VIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPA 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      ++   ++S++L  + V+V G  + L  +E+ + E         L++E  L
Sbjct: 123 AGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++     P   I+DV++  LRKKL     G + IETV G GY LR++
Sbjct: 183 DRVWGYDYSPGSNIVDVYVGYLRKKL-----GADLIETVRGIGYRLRQS 226


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 136/237 (57%), Gaps = 14/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++ED++ +A  ++L L  E +   + + G DG  L KF+E  +D ++LD+ L ++ G
Sbjct: 3   KILIVEDEQQIARVLQLELGFEGYETTIANTGTDG--LLKFHEDEYDLVLLDVMLPELNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ +R    + PV +L+  S+IEDKV GL  GA+DYI+KPF  +EL+ARIR  +R S
Sbjct: 61  LEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFS 120

Query: 120 RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL--TKE 172
              A      S+    DLS+N   + V     +I LT +E+ +  LL   K+  L  ++E
Sbjct: 121 HKSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDL--LLHFMKHAKLVQSRE 178

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             LN ++      +  ++DV++  LR+KL         + TV G GYVL+E A +ET
Sbjct: 179 QLLNAVWGYDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVLKE-ASNET 234


>gi|118577356|ref|YP_899596.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504861|gb|ABL01343.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ LLIED++ +A  I+  L+  N  V +   G +G+ L +  E+  +ILDLG+ +I G 
Sbjct: 1   MKYLLIEDERKIAGFIKRGLEEGNCQVVIVGDGAEGLRLAQTGEYALVILDLGIPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV IL+     E+ V GL++G+DDY+ KPF   EL ARI A++RR+ 
Sbjct: 61  SVLKELRSTGNQVPVLILTARKLPEEVVAGLEAGSDDYMGKPFAFRELRARIAALLRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +V G+L ++         G+ I L+ KEY ++E +    N  LT+ M  ++ + 
Sbjct: 121 RNRGSEVVFGELKLDPVTHRFWRSGNEISLSEKEYCLMEYMIRNPNQILTRSMIASNCWV 180

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +   IIDV++  LR+K+      K  I TV G+GY+LRE
Sbjct: 181 NTFEGKFSNIIDVYVTYLRRKVDVGYPTK-MIHTVRGKGYILRE 223


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A   +  L+  +F V + + G+ G+E     EFD IILDL L  + GFE
Sbjct: 3   RILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           V + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R SR
Sbjct: 63  VCKHIREKK-DVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121

Query: 121 ----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               GH  +  +    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RKIWNMDSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  ++    +  D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + 
Sbjct: 66  VCREIR-HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               G+     V+  DL++NL   +V   G ++ +  KE +++  L+   N   T+E  L
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGY 226


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++A+   + + L+ E F V     G+  +        D ++LD+ L DI GF
Sbjct: 79  VRVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGF 138

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V   LR A    P   L+   + +DKVRGL  G DDY++KPF+  ELVAR+RAI+RR+ 
Sbjct: 139 AVCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAG 198

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 GH   L       + LD +T EV+  G  + LT  EY++++ L       LT+ 
Sbjct: 199 SPVTGDGHPAPLRFA---DLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRA 255

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+H++      E  +++ +I  LR+K+ N       I TV G GYVLR
Sbjct: 256 QLLDHVWGHDFSGEGGVLETYISYLRRKVDNVE--PPLIHTVRGVGYVLR 303


>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G 
Sbjct: 23  VRVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 83  TVLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSG 142

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++V GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 143 AADRRSDSVLVVGDLMLDEDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 122 GKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|182438910|ref|YP_001826629.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326779565|ref|ZP_08238830.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178467426|dbj|BAG21946.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326659898|gb|EGE44744.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  ++  L++  F   V + G+  +       FD ++LD+GL    GF 
Sbjct: 3   RILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR A+++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R   R  +R
Sbjct: 63  VLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRQRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++ +G L+++L  +        + LT +E+ ++E+        L++E  L+H++ 
Sbjct: 123 APEVTMLRSGSLALDLRTRRARADDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LR+KL     G   +ET+ G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAERLETIRGMGYRL 218


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 44  RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 104 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 164 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 223 LNAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+ +E     ++D ++LD+ L  I G + 
Sbjct: 5   ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  K   PV I+S      DK  GL  GADDYI+KPF+  EL AR++A +RR   +
Sbjct: 65  LKKIR-EKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAY 123

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I   +L ++LD  TV   G  I LT KE Q+++L         TK+   
Sbjct: 124 VIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  +I+V + +LR K+ +      YI+T+WG GY L E
Sbjct: 184 TSVWNDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRLGE 231


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|332654953|ref|ZP_08420695.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332516296|gb|EGJ45904.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           ++ILL+EDD  L  SI+  LK E ++V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 2   IKILLMEDDLDLCQSIQQALKKEGYSVDCCNDGESSMIYALNTDYGYDLAIVDRMLPIID 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++A+R  +I  PV I++GMS+++D+V GL SGADDY+ KPF+  EL+AR+RA+ RR
Sbjct: 62  GLTIIKAMRRKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR 121

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++   DL  +   + V   G  + LT KE +++ +L  +  T+ ++E  +  
Sbjct: 122 PQQIQEMGMLSYADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E   +D +I  LRK+L      K  I T++G GY L
Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELH-SKCAITTIYGSGYRL 224


>gi|262089655|gb|ACY24751.1| two-component response regulator [uncultured organism]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ L  +IE  L+S   +V     G+  +   +  +FDA+ LDL L +  G 
Sbjct: 1   MRILLVEDNEDLGEAIEKRLRSAGHSVEWVRDGDHVVSTAESDQFDAVTLDLMLPNRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  K + P+ +++  S I+DKV  L  GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  GLIAELRKRKFNAPILVITARSEIDDKVSLLDLGADDYLVKPFDLRELEARLRALLRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S I  G+L+++L A    V G  + L  +E++++E+L       + KE  +N L++
Sbjct: 121 GQASSSIEVGNLALDLAALNASVDGKALELGRREFRLLEILVSHVGKVVPKERLMNQLFN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   +  +++ I +LRKKL    G    I TV G GY+LR
Sbjct: 181 FDESVSINALELHISRLRKKLD---GANVEIGTVRGVGYLLR 219


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+   +L     FD IILD+ L ++ G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+        ++  G +  +L    V V G +I LT KE++++     RK   + ++ 
Sbjct: 123 RQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E  +
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPTQ 235


>gi|225388704|ref|ZP_03758428.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme
           DSM 15981]
 gi|225045216|gb|EEG55462.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme
           DSM 15981]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ L ++++L L+   +   V   G+D +     Y +D I+LD  L  + G 
Sbjct: 1   MKILLVEDDRDLCNTVKLQLERAGYETDVCYQGQDALFYANQYPYDVIVLDRMLPQVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  +I+TPV I + +  + D++ GL +GADDY+ KP+   EL+ARIRA+ RR  
Sbjct: 61  TILQGLRRKQIATPVIITTALDGVNDRIDGLDAGADDYLVKPYAVGELLARIRAVTRRPG 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA +     D+ ++ D + +   G  + L+ +E  ++E L       L +E+ L +++
Sbjct: 121 NFHAGAEKCFADIRLDADRRELSGPGGTVRLSKRETALMEYLIRGAGQILPREIILTYIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E E   +D +I  LR++L  + G    I T+ G GY L+E
Sbjct: 181 GVDAEVEDGNLDNYIYFLRRRL-RSVGASAQIVTIHGTGYQLKE 223


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   L  +++ V V   G+ G EL + + +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   +I DK+ GL +GADDY+ KPF+  EL ARIRA++R  R
Sbjct: 61  TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLR--R 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G+     V    S+ LD  T EV  +   + L+ KEY ++E          ++   L +L
Sbjct: 119 GNTTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     PE   +   I  LR+KL  A    + IETV+G GY L+E  
Sbjct: 179 WSFERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRLKEKP 225


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239


>gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  +  ++ + L++   +V     G   + L      D ++LDLGL D+ G 
Sbjct: 1   MRVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV++ LR      P+ +LS   S  +KVR L SGADDY++KPF  +EL+AR+RA  RRS 
Sbjct: 61  EVIQRLR-GWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++ T   +V+L AK V  +G  + LT  E+ ++E+L+      +++   L+ ++
Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLREGEEVRLTPTEWHILEILARHAGQLVSQRQLLHDVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + E   + V++ +LR+KL        Y+ T  GRGY
Sbjct: 180 GPAYQSETNYLRVYMAQLRRKLEPDPACPRYLITEAGRGY 219


>gi|254446238|ref|ZP_05059714.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260546|gb|EDY84854.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED   +A+ +   L    + V +   G++   L + +E+DA I D+ +    G 
Sbjct: 1   MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR     TP  +L+  + +ED+V+GL +GADDY++KPF+  EL+AR+RAI+RR R
Sbjct: 61  SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L + T       I LT +E+ ++ELL L     ++K      ++D
Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    I+ V+I  LR+K+ +  G    I+T  G GY +R+++
Sbjct: 181 QSYDAGTNIVQVYIKYLREKI-DQEGEPPLIQTARGIGYAIRDSS 224


>gi|116512538|ref|YP_811445.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108192|gb|ABJ73332.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|300070367|gb|ADJ59767.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 225

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L+ S+   LKS      V D G +G+   +   +D I+LDL L +  GF
Sbjct: 5   IKILLVEDDLSLSKSVYDFLKSFAQVKQVYD-GVEGLYEAELGIYDLILLDLMLPEKNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVL+ LR   + TPV I++   S++DK+ G   GADDY++KPF  +EL ARI+A+++R+ 
Sbjct: 64  EVLKELREQNVDTPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +  G++ +NL  K+  V    + L GKE+ ++  L   +N  L KE   + ++
Sbjct: 124 KLEDSNGLSYGNIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  V +++V++ K+RKKL +     N + T+   GY+LR
Sbjct: 184 GYDSDTTVTVVEVYMSKIRKKLKDTEFVNN-LSTLRNVGYILR 225


>gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 222

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  +   +   L+ + +   + + G +G  +     +D +ILD+ L    G 
Sbjct: 1   MKILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILDMRLPGRNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR +    PV +L+   +++ KV  L++GADDY++KPF  EEL+AR  A++RR R
Sbjct: 61  DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GDL ++   + V   G  I LT KE+ ++E L       +++ +   + + 
Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   I+DV I  LRKK+ +A   K  I TV G GY++R
Sbjct: 181 YHFDPGTNIVDVVINHLRKKI-DARFDKKLITTVRGVGYMIR 221


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 134/236 (56%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +
Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17]
 gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD++ A  I   L+ E F +     G DG+       +D IILD  L  + G  
Sbjct: 4   RILLIEDDRSTADYIANGLREEGFLIDHAANGRDGLFHATDGSYDCIILDRMLPGMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L A+R A I++PV ILS +SS ED+V GL SG+DDY++KPF   EL+AR+R ++RR   
Sbjct: 64  ALAAIRAAGIASPVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGSV 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q+ +V  DL ++L A  V   G  I L  +EY+++E L    +  +T+ M L  +
Sbjct: 124 TTNAPQTKLVCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +P   + DV I +LRKK+      +  + TV G GY L
Sbjct: 184 WDFHFDPNTNVTDVHISRLRKKIDEGF-ARPLLHTVRGSGYKL 225


>gi|224372302|ref|YP_002606674.1| response regulator receiver domain protein [Nautilia profundicola
           AmH]
 gi|223588456|gb|ACM92192.1| response regulator receiver domain protein [Nautilia profundicola
           AmH]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/198 (37%), Positives = 122/198 (61%), Gaps = 2/198 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+ +A +IE + +   + + +   GE+G+ + +   +D +I+D  L  I G 
Sbjct: 1   MKILLIEDDEKIAKNIEKVFRQIGYRIDIAKDGEEGLYMAQNNNYDVLIVDWMLPKISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ L+  K +TP  IL+  S IEDKV GL   ADDY++KPF  EEL+AR++A+ RRS 
Sbjct: 61  DLLKKLKKEK-NTPALILTAKSDIEDKVEGLNV-ADDYLTKPFEFEELIARVKALYRRSN 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   DL +N + K V   G  I LT K++++++ L + KN  +  +M  ++L++
Sbjct: 119 NLNDNIIRVADLELNPETKEVRRAGKLIELTAKQFELLKYLMINKNKIVNTDMIQSNLWE 178

Query: 181 GRDEPEVKIIDVFICKLR 198
             DE    +I+V+I  LR
Sbjct: 179 MDDEINSNVINVYISHLR 196


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 43  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R  +  TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 103 ICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 162

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LSV+  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 163 LARDSRVDAGTLDVAG-LSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDL 221

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 222 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 268


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V     G D ++    Y  D I+LD+ +  + G  
Sbjct: 10  RILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR +   TPV +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 70  AARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 129

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A   +  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 130 AAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR
Sbjct: 190 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 237


>gi|229147640|ref|ZP_04275984.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228635849|gb|EEK92335.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
          Length = 220

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E + +       +G+ +    ++D IILD     I G E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVARI+AI+RRS  + Q
Sbjct: 61  QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARIQAILRRSDCNQQ 119

Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 KEISFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220


>gi|152992660|ref|YP_001358381.1| two-component response regulator [Sulfurovum sp. NBC37-1]
 gi|151424521|dbj|BAF72024.1| two-component response regulator [Sulfurovum sp. NBC37-1]
          Length = 220

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED+KA+A  ++ +L+ E +   V     D +E C    +D I+LD  L D  G 
Sbjct: 1   MYLLIVEDEKAVADQLKELLEQEKYRCDVAYNYRDALEYCDERRYDLILLDWNLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  + +TPV +LS  S ++D+V  L +G DDY+ KP++  EL+ARIRA++RR  
Sbjct: 61  TLLNVLREEEDATPVLMLSANSKVDDRVAVLDAGGDDYLCKPYSNIELLARIRALLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-Y 179
               +L+ +GDL+++  ++ V V    I L+  E+ ++ELL   KN  LT+    ++L  
Sbjct: 121 PQKTTLLKSGDLTLDTSSRKVCVNKEPITLSPAEFDLLELLLHNKNIVLTRYQLNDYLCQ 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D     +  ++DV I  LRKK+    G  N I TV G  Y +++
Sbjct: 181 DYNSLKQSNLVDVHIKNLRKKI----GIDNCIVTVRGVRYKIQD 220


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  I   L+ E F   V   G D I + +  + D +ILDLGL  I G E
Sbjct: 16  RALVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRQIRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRV 134

Query: 121 ----GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               G A    VT     G LS+++ A+ V + G  I LT  E+ ++E LS      L++
Sbjct: 135 LHTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +  + DG       ++DV I  LR+KL + A    YI TV G GY
Sbjct: 195 RQLIEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGY 242


>gi|332991876|gb|AEF01931.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas sp. SN2]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/220 (38%), Positives = 126/220 (57%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  IE     E  +      GE G+      + D I+LD+ L  + GF
Sbjct: 1   MNVLLVEDDPKVAAHIEKGFIGEGHSCVAARDGEKGLAEALSDDVDVIVLDVMLPLLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   + TPV +LS  S +EDKVRGL+SGA+DY++KPF  EEL+AR+  +  R R
Sbjct: 61  TILERLRKDNVLTPVLLLSAKSQVEDKVRGLRSGANDYLTKPFAFEELLARVEGLAGRER 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++LI  GDL+++L  + V+     I L  KE+Q++E L   +   +T+ M L  ++
Sbjct: 121 ESGDKTLIKVGDLTLDLVNRKVQRGDTEIDLQSKEFQLLECLLRHQGKVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +P+  +IDV I +LR+K+  A      IETV G GY
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAF-NVPLIETVRGTGY 219


>gi|209963556|ref|YP_002296471.1| cell cycle transcriptional regulator (CheY-like receiver domain)
           CtrA, putative [Rhodospirillum centenum SW]
 gi|209957022|gb|ACI97658.1| cell cycle transcriptional regulator (CheY-like receiver domain)
           CtrA, putative [Rhodospirillum centenum SW]
          Length = 256

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 12/236 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-----FYEFDAIILDLGLT 55
           MRILLIE+++ +A ++   +        ++D   D I L +     F ++DAI++    T
Sbjct: 1   MRILLIENERLIAAALHREIGKAGLRCELSDEA-DAIRLMQEGDDSFADYDAILVG---T 56

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G  ++  LR     T +  L G   +   +  L+SGADD + KP N  E  AR+ A+
Sbjct: 57  VSNGGGLVTQLRRCSGHTIIIGLLGHRCVTSTIAYLRSGADDVLVKPINALEFEARLHAV 116

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            RR+ GH+ S +  G L+V LD +   V G R+ L+ +E+ +  +L+L     ++KE   
Sbjct: 117 RRRTHGHSSSELRVGRLTVYLDGRDPAVDGQRLRLSHREHAIFSVLALNVGRVVSKEKIY 176

Query: 176 NHLYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +Y   G D P  K+IDV+ICKLRKKL+ A GG  YIETV+GRGY     +++E 
Sbjct: 177 ETVYGLTGSD-PLDKVIDVYICKLRKKLAEATGGDRYIETVYGRGYKFEAPSEEEA 231


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57
           ILL+ED++AL+  +   LK E++ V    L +DG+E  + Y+      D IILD  L  +
Sbjct: 5   ILLVEDEEALSSYLIPELKFEDYQVL---LAKDGLEALQVYDNNRGNLDLIILDWMLPKL 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR +R      PV +++    + DKV GL SGADDYI+KPF  EEL+ARIR ++R
Sbjct: 62  DGLEVLRRIR-KNDDIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLR 120

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               H Q   L    DL++N  ++ V      I LT +EY+++  L      TLT++  L
Sbjct: 121 HESHHHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + ++    E +  ++DV+I  LR K+      K  I TV G GYV+  N ++
Sbjct: 181 DAVWGVDFEGQPNVVDVYIRYLRNKVDRGY-SKQLIHTVRGVGYVMSGNYQE 231


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 231


>gi|83749689|ref|ZP_00946669.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207724268|ref|YP_002254665.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739009|ref|YP_002257402.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|300697089|ref|YP_003747750.1| DNA-binding response regulator in two-component regulatory system
           with BasS (basR) [Ralstonia solanacearum CFBP2957]
 gi|83723651|gb|EAP70849.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206589484|emb|CAQ36445.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592380|emb|CAQ59286.1| two component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|299073813|emb|CBJ53334.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum
           CFBP2957]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L  ++   L+   +N        D  +      FDAI+LDLGL D  G   
Sbjct: 4   ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHVF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A+   PV I S   ++ ++++GL  GADD++ KPF  +ELVAR+RA++RR  G 
Sbjct: 64  LEELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELVARLRAVLRRHAGQ 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + +    G L V    K V   G+ + LT +EYQ++  L  R +  +T+E  ++ LY   
Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++V I  LR KL     G+  I+T+ G GY++  N
Sbjct: 184 NRVSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 220


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 6/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + V     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      L+  G+L V+  A+ V+V+G  + LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           N ++  + +     ++  I +LR K+         I TVWGRGY L  +A +E+ E
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKLAISAMEESGE 241


>gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 227

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    +   +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R  R
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GH     + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + 
Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRAKIDEGHSIK-LIQTVRGMGYVL 221


>gi|170738040|ref|YP_001779300.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820228|gb|ACA94810.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  +A  I   L++    + V   G DG+       +D + LD  L D+ G  +
Sbjct: 4   ILTIEDDPLIADHIAHTLRAAGHQIDVARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121
           L  +R   + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI  ++ RR RG
Sbjct: 64  LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  G+L+++L  +   +    + L   E +++E +       LT+ M    ++ 
Sbjct: 124 ARVETVLRAGELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +P   +IDV I +LRKK+ N  G    I T+ G GY+L
Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++EL L++  + V     G   + L      D I+LDLGL D+ G +
Sbjct: 3   RVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR +    PV +LS   S ++KV+ L +GADDY++KPF  +EL+AR+RA VRR+  
Sbjct: 63  VLRGLR-SWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEP 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A      ++   D +V+L AK V  QG  + LT  E+ ++E+L       ++++  L  
Sbjct: 122 AAPDEEAEVVDAADFTVDLAAKRVHRQGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      E   + V++ +LR+KL        +  T  G GY
Sbjct: 182 VWGPSYGTESNYLRVYMAQLRRKLETDPAHPRHFITEPGMGY 223


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+  ++E +       G+D I +L    +   +ILDL + ++ G
Sbjct: 1   MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 224


>gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 219

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D ++V        LT  E++++    L     L++     HLY
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +++V I +LR+KL     G   IET   +GY
Sbjct: 181 DGESERDSNVLEVHISRLRRKL-----GDPVIETRRNQGY 215


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A+         +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  
Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ ++    NY+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLR 229


>gi|192293660|ref|YP_001994265.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|192287409|gb|ACF03790.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A  +   L    +   +   GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDSRIASELARGLGEAGYLAEIVGDGEEAWFRGDTEDYAAIILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TILKRWRDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S++  G++ ++     V V G  + L+  EY++   L L +   +++     ++Y 
Sbjct: 121 GHASSVVTIGEVMLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+V + ++R+K+     G + IET  G GY++
Sbjct: 181 QDDAHDSNAIEVLVGRVRRKI-----GADLIETRRGFGYIV 216


>gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 255

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 21  MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 81  SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   +P+  +IDV I +LR K+     G   + TV G GY+L+     ++ 
Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGP-LLHTVRGAGYMLKAGRAKQSA 250


>gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2]
 gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 221

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   I   L+ E   V +VTD G          EFD ++LD+GL    G
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR LR     TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+
Sbjct: 60  LDILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY
Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  + L L  E F+  +   GE  +     Y+ + I+LDL L  I G++
Sbjct: 5   KILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGIDGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  + +TP+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 65  VCREIR-TRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            ++      D         + +NL   +V V GH + +  KE +++  L+   N   T+E
Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      + + +DV I +LR+K+ +  G    + TVWG GY
Sbjct: 184 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWS--LSTVWGIGY 228


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R  +   +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++A+ RR 
Sbjct: 65  LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRL 124

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 SAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 233

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +ILL+ED++ LA S++  L+ E+  V     G++ ++L   +E   + IILD  L  + G
Sbjct: 4   KILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F VLR +R      PV +L+    I DKV GL  GADDY++KPF  EEL+ARI   +R S
Sbjct: 64  FSVLRRIR-KHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHS 122

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   H   +   GDL+V+   K V      I LT +EY+++ +L + ++   +++  L+ 
Sbjct: 123 QKTDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    E +  I+DV++  LR K+      +  I TV G GY+L +N +D
Sbjct: 183 VWGVDFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQNVQD 232


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R  +   +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 65  LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|317402481|gb|EFV83049.1| two component response regulator [Achromobacter xylosoxidans C54]
          Length = 243

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ +A  +   L    F   V D   D      F    E+DAI++DL L D 
Sbjct: 16  MRILLVEDERDMASWLMRALAQSGF---VPDHAADARTAEAFMAGTEYDAIVMDLRLPDK 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR +R     TPV +L+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VR
Sbjct: 73  HGLVVLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVR 132

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G LS + +++   + G  + LT +E+  +  L  R    + K      
Sbjct: 133 RSRGRQHPRLQCGSLSYDSESRAFTLDGSLLFLTPREHAALAALLTRSGYPVDKSQLFGK 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    E     I+V + +LRKKL   AG    I TV G GY+L   A +
Sbjct: 193 VFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESVASE 239


>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ L   I   L  E + V     G D +      E+D I+ D+ L  + GF
Sbjct: 1   MRILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ +R   I TPV +L+    IED+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S  +A ++    +L+VN ++  V      I L+ +E+ ++E +   K   L++E    H
Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   E    +IDV+I  LR+K+      K  I T+ G GYVL+
Sbjct: 181 IWNYDYEGGTNVIDVYIRYLRRKIDKGFEPK-LIHTIRGIGYVLK 224


>gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 229

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 130/228 (57%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L ++ FNV     GE G++L +  ++  I+LD+ L  + GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   +  L+V G +++NL A+   ++   + LTG EY+++ LL+ R    ++KE 
Sbjct: 120 HITTMNTTSSNKLVVNG-VTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R     + ID+ +  +RKK++     +  I+T+ G GYV 
Sbjct: 179 ISEDVLGRRLASFDRSIDMHVSNIRKKIAEHLPNE-LIKTIRGTGYVF 225


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V V   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRRLR-NKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   H   LI    +S++L   TV   G  + LT KE+Q+++  +       TK  
Sbjct: 123 VLGSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++DG    +   + V I KLRKK+        +I TVWG GY
Sbjct: 183 LFRNVWDGNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGY 228


>gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL ED+K +A +I  +LK E ++V ++TD G   +   +   +D  ILD+ +  + G
Sbjct: 1   MRVLLAEDEKRMAAAIVALLKQEKYDVDHMTD-GASALLALESNMYDIAILDVMMPKMSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV R  R   I+ P+ +L+  S ++DKV GL +GADDY++KPF   EL+AR+RA+ RRS
Sbjct: 60  FEVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               ++++  GDLS++    T+  E  G  + L+ KE +++E +       +T++     
Sbjct: 120 SSFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E   ++V++   RKKL+   G    I+ V G GY LR+
Sbjct: 180 IWGFESDAEYNNVEVYMSFTRKKLA-FIGSTVEIKAVRGLGYELRD 224


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F V     G   +E    +  D I+LD+ L D  GF 
Sbjct: 18  RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGFA 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   ++ D++ GL  G DDY++KPF+ EE++ARI AI+RR+RG
Sbjct: 78  VVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRARG 137

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      +V  D+ ++ D+  V   G  I L+  E++++          L+K   L+H+
Sbjct: 138 GAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++ ++  LR+K+ N       I T+ G GYVLR+
Sbjct: 198 WNYDFRGDAGIVESYVSALRRKVDNTE--PRLIHTLRGVGYVLRQ 240


>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD+ +++ +   L    +N+ + D GE   EL   Y+FD I++D+ L  + G 
Sbjct: 1   MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R     TP+ +LS ++S +DK++ L  GADDY+SKPF+ EEL++RI+A+ RR++
Sbjct: 61  QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G+++++ D   V      I  +  EY++   L   KN  L++   L++
Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +    ++DV+I  +R K+      +  I TV G GY++++
Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDETE--QKIIHTVKGTGYLIKD 224


>gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++   V           + K  EFD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR + +  PV IL+   S+ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLQQLRHSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +  ++   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD+ALA  I ++L+++ F  V+  D G+  +E+ +  + D ++LDL L  + G 
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQ-ALEVFRSSKPDLVLLDLMLPGMDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A+  +P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R   
Sbjct: 63  EVCRQIR-AESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGD 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   D+++++    V     RI LT  E+ ++  L+ +     T+E+ L  ++ 
Sbjct: 122 QKAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 220


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L  E+F   + D G D + + + ++ D +ILDLGL  + G E
Sbjct: 19  RALVVDDEAALAEVVASYLNREHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPRA 137

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G   + +  G L +++  + V + G  I LT  E+ ++  LS R    L++
Sbjct: 138 TPEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPGVVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  + +G       ++DV I  +R+KL +      Y+ TV G GY
Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGY 245


>gi|300773343|ref|ZP_07083212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759514|gb|EFK56341.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  LA SI   L  + +        +   E    +++D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEYELAKSIADYLGQQGYRCEFASTFQMAQEKIAGFDYDCILLDIMLPDGNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ L+  +    V I+S   +++DK++GLQ GADDY++KPF+  ELVARI A++RR +
Sbjct: 61  HVLQTLKEQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYAVIRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
               ++IV  +L ++L AKTV V  H +  T KE  ++      KN  ++K     HL  
Sbjct: 121 FQNSNIIVQNELQIDLLAKTVSVGDHAVPFTKKELDLLLYFIGNKNKVISKSTLAEHLSG 180

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  D  +   I   I  L+KKL +A  G +Y++T++G GY
Sbjct: 181 DVADMLDNHD--FIYAHIKNLKKKLQDAHSG-SYLKTIYGSGY 220


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
 gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
          Length = 235

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+ A+   +   L S+ F ++  D G  G+        D I+LDLGL D+ G E
Sbjct: 11  RILVIDDEAAIRRFLHSALSSDEFILHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA +RRS  
Sbjct: 71  VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +  +GDL+V+L+ + V V+G  + LT  EY ++ LL    +  +T    L  ++ 
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + +++ V I  LRKK+        +I T  G GY  ++
Sbjct: 190 VAYQDQPQVLRVTISNLRKKVERDPSRPRHITTEPGVGYRFKQ 232


>gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++   L+ + F +     G+      +  ++  ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV I +   ++ D+V GL +GADDY+ KPF+ EEL AR+RA+ RR  
Sbjct: 61  AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+SL+   ++ +N     V V G  ++L+ +E+ +++    R    L++      LY 
Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   ++V I  LRKK+     G ++I+ V G GY++
Sbjct: 181 WDDSIESNAVEVHIHALRKKV-----GSDFIKNVRGVGYLV 216


>gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 124/233 (53%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +ILLIEDDK ++  ++  L  EN+ V       DG E C +++   F  I+LDL +  I 
Sbjct: 5   KILLIEDDKEISEMLKNYLTVENYEVIC---AYDGQEACDYFDRTDFSMILLDLMIPKIN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V++ +R   +  P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR
Sbjct: 62  GMDVMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRR 120

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              + Q        +  G+L +NL   T+   G R+ LT KEY++++LL        TKE
Sbjct: 121 RNQYDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                ++      +   ++V I +LR K+        YI TVWG GY L EN 
Sbjct: 181 QIYALVWKDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGENV 233


>gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + +      V   D   D  E   F      D  I+DLGL D 
Sbjct: 1   MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMSMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + + G  I LT  EY +IE L   K   ++KE  +  
Sbjct: 118 RNSGLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 136/239 (56%), Gaps = 10/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++L L+ E+F++     G++ +++    ++  I+LDL L ++ G E
Sbjct: 3   KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR+  
Sbjct: 63  VANRLREYK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA+ LI    L ++ DA  V   G +++LT KEY+++  L+   N    +E 
Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETCE 231
            L  ++      +++ +D  + +LR+KL+  ++   + I+TVWG GY    N  DET +
Sbjct: 182 LLKDVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVNNNDETTQ 240


>gi|149204702|ref|ZP_01881666.1| two-component system, regulatory protein [Roseovarius sp. TM1035]
 gi|149141811|gb|EDM29863.1| two-component system, regulatory protein [Roseovarius sp. TM1035]
          Length = 222

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ LA  I   L    + V     GE G  L       A +LDLGL  I G 
Sbjct: 1   MKVLVVEDDRDLAAQIAAALTQAGYTVESAHDGETGEFLGATETVGAAVLDLGLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R A ++ PV IL+   +  DKV G ++GADDY+ KPF  EE+  R+  ++RR+ 
Sbjct: 61  EVLKRWRGAGLTFPVLILTARDAWSDKVAGFRAGADDYVLKPFRMEEVTLRLSTLIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G L ++       + G  + LT  E +++  L L K   +++     H+YD
Sbjct: 121 GHATAELAAGALMLDTATGLATLDGMPLRLTAFEGKLLRYLMLHKGRVVSRTELSEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + + ++V I +LR+K+     G+  +ET  G GY L
Sbjct: 181 RDADRDFRSMEVVIGRLRRKI-----GEARVETRRGEGYRL 216


>gi|294678530|ref|YP_003579145.1| winged helix family two component transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294477350|gb|ADE86738.1| two component transcriptional regulator, winged helix family
           [Rhodobacter capsulatus SB 1003]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  ++   + ++  +V      +   +      +D I+LDL L D  G 
Sbjct: 1   MRILIVEDDAILGAAVRDQVAADGHSVDWAMRLDQAADALAVAAYDLILLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR   ++TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  PFLKTLRTQGVATPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELTARIGSVARRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   +I  G+L+++L A+ +   G  + LT +E+ + ELL  R      K    + LY 
Sbjct: 121 GNPNPVIRLGELTIDLAARELRRAGKAVALTAREWALFELLLSRPGQIFPKRDLEDRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V + +LRKKL     G   IET  G GY L
Sbjct: 181 FDDEIGSNTLEVHVSRLRKKL-----GAQVIETERGLGYRL 216


>gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45]
 gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD  +A  I   L     +V +V+D G D +  C + + D  ILD  L  + G
Sbjct: 1   MKILLAEDDAKIADYIVAGLSENGHSVEHVSD-GRDALSYCLYNDCDLAILDRMLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             VL+ALR ++ + PV  L+ +  ++D+V GL +G DDY++KPF+  ELVARI AIVRR 
Sbjct: 60  LSVLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRK 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + ++   DL+++L ++T   QG+ I L  KE+ ++E+L       +T+ + L  +
Sbjct: 120 SEKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTRTLLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   EP   +++  + +LR K+         I T+   GY +
Sbjct: 180 WNFNFEPNTTVVETHMSRLRAKVDRPFDTP-LIHTIRNTGYSM 221


>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
 gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  ++  +   DL ++L  + V   G RI LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEGQDVK-LIQTVRGMGYVL 221


>gi|33599368|ref|NP_886928.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
 gi|33566964|emb|CAE30877.1| transcriptional regulatory protein [Bordetella bronchiseptica RB50]
          Length = 237

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFEV 62
           LLIEDD+A A  +   L      V V+  G  G+E     ++D IILD  L  ++ G  +
Sbjct: 5   LLIEDDQANARYLANGLTELGHMVTVSGDGAGGLENAMKDQWDIIILDRMLPNNVDGLSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR     TPV +LS +S+++D+V GL++G DDY+ KPF+  ELVAR+ A+VRR+R  
Sbjct: 65  LSTLRALGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPD 124

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   DLSVN+  + V+  G  I L  +E++++  L L  +  +T+ M L  ++  
Sbjct: 125 PDVKELRIADLSVNVATQKVQRAGVPISLQPQEFRLLVYLMLHAHRIVTRTMLLETIWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +P+  +IDV + +LR+K+ + A     I TV G GY L +
Sbjct: 185 SFDPQSNVIDVQVSRLRRKI-DTASATPLIHTVRGAGYTLSD 225


>gi|320108041|ref|YP_004183631.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926562|gb|ADV83637.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  +   ++  L    ++V   D     +E    + FDA+I+DLGL D+ G 
Sbjct: 1   MRLLLVEDELEIQGFVKQSLIDAGWDVQTADDATSALEEVTKHVFDALIIDLGLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
           +++  LR + I  PV ILS   S++++V+GL+ G DDY++KPF   ELVARIR +VR  S
Sbjct: 61  DLILRLRRSGIKAPVLILSARRSVDERVKGLELGGDDYLTKPFAAAELVARIRNLVRLAS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    S I   DL ++   +     G  ++LT +E+ ++E L       +T+ M L  ++
Sbjct: 121 QKENISHIRIHDLEIDAVKRRATRNGQLLNLTPQEFLLLEYLCRNAGRVVTRSMLLAEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +P+  ++DV + +LR K+ +  G ++ I+T+ G GYV +
Sbjct: 181 GMQFQPDTNMVDVHMYRLRGKI-DPEGSESRIKTLRGVGYVFQ 222


>gi|329896334|ref|ZP_08271457.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
 gi|328921858|gb|EGG29228.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   +   L   +F         +       Y  D I+LDLGL D  G 
Sbjct: 1   MRVLVVEDEPRLREGLVKSLHQSSFACVEAGSATEAQYSVDNYPCDLILLDLGLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R   +  P+ IL+  +  +DKV GL++GADDY++KPF  EE+VARI+  +RR  
Sbjct: 61  ALVRRWRDQGLDLPIIILTARADWQDKVSGLEAGADDYVTKPFRVEEVVARIKVALRRVG 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +     G +++N DA+ V V    + LT  E+ ++ LL+       +K     HLY
Sbjct: 121 GRATERSDFVGGVTINFDARRVWVGKQELSLTSFEFNLLALLAQSPGAVRSKADLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  ++ E  +++V + +LRKK ++A      IETV G GY
Sbjct: 181 DADEDRESNVLEVLVGRLRKKFASAM-PDVVIETVRGSGY 219


>gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 239

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 13/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD+ LA      L+S    V +   GE G+E     E + ++LDL L  I G 
Sbjct: 4   VRILLIEDDEKLAERTAEYLQSHKATVEIVPDGERGLERAASGEHELVLLDLMLPGIDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R LR  +   PV ILS      D++ GL+ GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 64  ELCRKLR-QRSKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHS 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++G  +  + TG L ++   +T  + G    LT  ++ ++ LL+ +    L++      
Sbjct: 123 AAQGDDEDSVTTGPLEIDRARRTATIAGASCELTAYQFDLLWLLATQAERVLSRNQLHAQ 182

Query: 178 LYDGRDEPEV-------KIIDVFICKLRKKLSNAAGGKN--YIETVWGRGYVL 221
           +   R EP +       + IDV + K+R+ L  A+ G+    I+TV G GYVL
Sbjct: 183 VRALRGEPAMDFDPTVDRSIDVHLSKIRQALDAASPGRGAAMIKTVRGVGYVL 235


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   +++ L+ E + +   + G   +   + ++ DA++LD+ L D+ G 
Sbjct: 31  IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      PV  L+   S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 91  QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 150

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL+++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 151 LVVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 210

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+K+   AG    I TV G GY+L+
Sbjct: 211 RVWSYDFGGKSSVVEIYISYLRRKID--AGRNPMIHTVRGSGYMLK 254


>gi|221133927|ref|ZP_03560232.1| response regulator [Glaciecola sp. HTCC2999]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+ED+ ALA+ I   L+   + V     G+  I   +  + D IILDLGL DI G 
Sbjct: 1   MHILLVEDEIALANEICQSLRQAQYAVSHLGHGKQAIIAAQNGDVDIIILDLGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ +R  +++ P+ +L+    + DK+ GL +GADDY+ KPF  EEL+AR+R + RR  
Sbjct: 61  DVIKKIRSLQLAIPILVLTARGQLSDKINGLDAGADDYLPKPFALEELLARLRVLQRRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I    +S+N+D+  V V    I L  KE+ ++  L  R N  ++K    + LY+
Sbjct: 121 TVMSSTIEISQVSLNIDSMLVTVNDTMIQLRRKEFMVLRALMERANRIVSKAQLESMLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     I+V +  LRKKL      +++I  + G GY +
Sbjct: 181 WGHEVSSNAIEVHVHNLRKKLP-----EHFITNIRGVGYCI 216


>gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923]
 gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA
 gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae]
 gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae]
 gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923]
          Length = 233

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 116/211 (54%), Gaps = 4/211 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGD 131
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A S    I  G 
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETIAVGP 141

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L V++  +   V G  + LT +E+ ++ +L+  K T L++   L  ++      +  ++D
Sbjct: 142 LEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWGYDFAADTNVVD 201

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           VFI  LR+KL  A  G   + TV G G+VLR
Sbjct: 202 VFIGYLRRKL-EANSGPRLLHTVRGVGFVLR 231


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIRENR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D   V V+G    LT KE+ ++ELL   K   L+     
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548]
 gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548]
          Length = 229

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    N  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGINTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQ+  ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +   ++  L+   + + +   G DG        FD IILD+ L D+ G+
Sbjct: 14  MRILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGW 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R+     PV  L+   S+EDK+ GL+SGADDY+ KPF   EL+AR++ ++RR  
Sbjct: 74  QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              QS  +T   L +++  +    +  ++HLT KE+ ++ELL   +   LT+    + ++
Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +IDV I +LR K+ +    K  I TV G GY L   A
Sbjct: 194 DMNFDSDTNVIDVAIRRLRAKVDDPFSVK-LIHTVRGMGYKLDTEA 238


>gi|309783437|ref|ZP_07678143.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|308917836|gb|EFP63527.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 206

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/190 (36%), Positives = 114/190 (60%), Gaps = 2/190 (1%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           G DG  L    ++D ++LD+ L D+ G++++++LR A+ + PV  L+   S+ D+V+GL+
Sbjct: 11  GTDGRHLAMSGDYDLLLLDVMLPDVDGWQIVQSLRAAEQAVPVLFLTARDSVADRVKGLE 70

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLT 151
            GADDY+ KPF   EL+AR+R ++RR  G   S  I   DL ++L  +     G +I LT
Sbjct: 71  MGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRIQVADLVLDLARRRASRGGQKIPLT 130

Query: 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211
            KE+ ++ELL  R+   L + +  + ++D   + +  +IDV I +LR K+ +    K  I
Sbjct: 131 SKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDHFEPK-LI 189

Query: 212 ETVWGRGYVL 221
           +TV G GYVL
Sbjct: 190 QTVRGMGYVL 199


>gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 223

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   L    +       GE G+       FD +I+D  +    G 
Sbjct: 1   MRILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    +TPV  LS +  + D+V GL++GADDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  EVVETLRREGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221


>gi|257870434|ref|ZP_05650087.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804598|gb|EEV33420.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 228

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 131/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +N  V   G  G++     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQTK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGSDVIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|86147196|ref|ZP_01065512.1| transcriptional regulator [Vibrio sp. MED222]
 gi|218708119|ref|YP_002415740.1| DNA-binding response regulator PhoP [Vibrio splendidus LGP32]
 gi|85835080|gb|EAQ53222.1| transcriptional regulator [Vibrio sp. MED222]
 gi|218321138|emb|CAV17088.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ, PhoP [Vibrio splendidus LGP32]
          Length = 226

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           M ++L+ED++ L H +   L  +   V+        ++ + K    D +I+DLGL D  G
Sbjct: 1   MLVVLVEDNEILNHHLSSQLSEQGHTVHADRTASACLQTIQKQSNTDVMIIDLGLPDFDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ +R  +I+ P+ IL+   + +DKV GL SGADDY++KPF  EEL AR+ A+VRR+
Sbjct: 61  ITLIKQIRRKEIAVPILILTARGNWQDKVEGLNSGADDYLTKPFQFEELHARLEALVRRN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G + S I    L+++  AK +      I LT  E+Q+ E L       ++K+   + LY
Sbjct: 121 QGFSASQIKAQSLTLDTQAKRISYDDALIELTALEFQIFEYLIRHCLQIVSKQQIADSLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +  ++  I+V + +LRKKL+     K  I T+ G+GY     AK
Sbjct: 181 AQGENVQLNNIEVIVSRLRKKLTQYTQAK-LISTIRGQGYRFELEAK 226


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 135/222 (60%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   I++ L++  +   +    ++  +  K ++ D I+LD+ + +  G+E
Sbjct: 3   KILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ +R  +  TPV +L+  S   DKV GL+ GADDYI KPF+ +EL+AR++A++RR+  
Sbjct: 63  ILKWIR-REHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I+   L +++D+ T+  +   + +  KE+++I  L+  KN   T+E  L  ++
Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL +   G+N+ IETVWG GY
Sbjct: 182 -GYDYPGDSRTVDVHIKRLREKLQD---GENWQIETVWGVGY 219


>gi|171915823|ref|ZP_02931293.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD   A ++   +    +   V   G++ ++      FDA+I+D+ L    G 
Sbjct: 1   MTILVVEDDPRTAEALRESITDAGWTAEVLMRGDEAVQCISTQAFDAVIMDIMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    STPV +LS    ++ ++ GL +GADDY++KPF+  E+VARIRAI RR  
Sbjct: 61  SIVKQLRAMHNSTPVLMLSARGDVDHRISGLDAGADDYLAKPFSMGEVVARIRAIARRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL++++  +  +  G  I L+ +E++++++L    +T   + M L  ++D
Sbjct: 121 ESGAILLRLADLTLDVPHRVAQRAGKNIELSPREFRLVQVLMQNVDTVCNRTMLLRLVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   ++DV++ KLR K+ +       + TV G GY++ +
Sbjct: 181 YNFDPGTNLVDVYVRKLRDKI-DQGHAIPLLHTVRGVGYLMSD 222


>gi|145223425|ref|YP_001134103.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145215911|gb|ABP45315.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 122/229 (53%), Gaps = 13/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ + F   V   G D I + + ++ D +ILDLGL  I G E
Sbjct: 19  RALVVDDELPLAEVVASYLERDQFEAVVAGNGVDAIAVARDFDPDVVILDLGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVAR+RA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARVRAMLRRPR- 136

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             QS   T           G LSV++ A+ V +   +I LT  E+ ++E LS R    L+
Sbjct: 137 VLQSATATAEREVAPPRRFGALSVDVAAREVGIDDEQILLTRTEFDILEALSGRPGIVLS 196

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  + DG       ++DV I  LR+KL + A    YI TV G GY
Sbjct: 197 RRQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 245


>gi|120598744|ref|YP_963318.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146293179|ref|YP_001183603.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120558837|gb|ABM24764.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145564869|gb|ABP75804.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319426309|gb|ADV54383.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 219

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V   +  +  ++  K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNETFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A R   IS P  +L+  ++ + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  DLLKAWRQQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + ++ G L ++L+ + V  +   I L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKKL+N       I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD AL   +   L+   F V     GE  +EL  F   D IILDL L  + GF
Sbjct: 1   MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALEL--FPRADLIILDLMLPKLDGF 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  +   P+ +L+     E++V+GL+ GADDY+ KPF+ +E+VAR++A++RR+ 
Sbjct: 59  KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRA- 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + L   G L +    +   ++G  + L+  E+ ++  L+       T+E  L  ++ 
Sbjct: 118 GLKEEL-CYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVW- 175

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G D P + +++DV I  LRKKL +      +IETV G GY  RE 
Sbjct: 176 GPDFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRFREG 220


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 22/236 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  I L L  E +   +   G + ++L + Y  D ++LD+ L  + G++V
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    +TP+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RR    
Sbjct: 66  CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124

Query: 119 ---------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                          S  H  + +    L VN+   TV  +GH + +  KE +++  L+ 
Sbjct: 125 ESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLAS 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R N   T+E  L+ L+      + + +DV I +LR+KL+N       I TVWG GY
Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGY 238


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  129 bits (325), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++D+K +   I   L  E ++V     G + I   K   +D +ILD+ L +  G 
Sbjct: 3   IKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYTGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  EL ARI+A++RRS 
Sbjct: 63  EVCQIVREFS-NVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSI 121

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +  +  GDL +  ++K V +  + I+LT KE+ M+EL +  +     +E  L+ 
Sbjct: 122 QEKETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDS 181

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G+  P +V+ +DV + +LR+K+    G   YI T WG GY  ++
Sbjct: 182 IW-GKGYPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYFKD 227


>gi|331270596|ref|YP_004397088.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329127146|gb|AEB77091.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 231

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ ++F V     GEDGI+         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGINGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+ +    DK++GL+ GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNHPKVGIIMLTALGQDVDKIKGLEHGADDYMIKPFNPLELAARIISLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +  ++++    V+L++KT      +++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SNDTSSEILISEPFKVDLNSKTAYKNEEKLNLTPKEFLLLKIFIENIGRSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGIGYIWKED 231


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G 
Sbjct: 17  LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  + + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS 
Sbjct: 77  EVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ 
Sbjct: 137 ASEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242


>gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 219

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D ++V        LT  E++++    L     L++     HLY
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E +  +++V I +LR+KL     G   IET   +GY
Sbjct: 181 DGESERDSNVLEVHISRLRRKL-----GDPVIETRRSQGY 215


>gi|257867607|ref|ZP_05647260.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873937|ref|ZP_05653590.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877695|ref|ZP_05657348.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571255|ref|ZP_08146755.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257801663|gb|EEV30593.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808101|gb|EEV36923.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811861|gb|EEV40681.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155731|gb|EGC67927.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +N  V   G  G++     E+DAI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYNTEVHYNGRTGLDAALNNEWDAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQSK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRGTDVIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
 gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK +AH +EL L  E   V V   G D +   + ++ D +ILD+ L  + G 
Sbjct: 1   MKILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEFKPDVVILDIMLPGLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR       + +L+ +  ++DKV     GADDY+ KPF+ EEL+ARI+A+ RR +
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I +  + + +D   V V G  + L+  E+ ++ LL   +N  L+KE  L+ ++ 
Sbjct: 120 ERKEEVISSEGIELYVDQHRVIVDGKEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+    +++V+I  LRKKL +      YI+T+ G GY  R++
Sbjct: 180 DYDDERENLVEVYINYLRKKLGDKG---KYIKTIRGIGYSFRKD 220


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD ALA  +   L+     V     G +   L     +  I+LD+GL  + GF
Sbjct: 1   MRVLVVEDDAALARGLVAALRLAGLAVDHEADGAEAARLALSEPYSLIVLDVGLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R AK + PV IL+   ++ D+VRGL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  EVLRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G LS++    TV +    + L  +E  ++ +L  R    + KE     ++ 
Sbjct: 121 GLPNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +++++ +LRKKL         I T+ G GY+L
Sbjct: 181 FDEAVAPNALELYVARLRKKLQP---NGPEIRTIRGLGYLL 218


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+FN++    G++  EL   + +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 SAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEVRASDEPT 240


>gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ L   I+ ML+ E  +V     G+D     K   +D ++LD  +  + G 
Sbjct: 1   MRILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWMMPAMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   +  P+ +L+   ++ED+V+GL +GADDY+ KPF   EL+AR+RA+ RR +
Sbjct: 61  ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  IV   DL +N +  +V   G  I LT +E+ +++LL   K   L +E+ +  ++
Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +     +D +I  LRKK+    G    I  + G GY L E
Sbjct: 181 GLDADVTDNTLDAYIRLLRKKIE-PPGAAKLIHNIRGVGYTLEE 223


>gi|256852704|ref|ZP_05558075.1| response regulator [Enterococcus faecalis T8]
 gi|256712049|gb|EEU27086.1| response regulator [Enterococcus faecalis T8]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/226 (38%), Positives = 130/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL LK E +   V   G  G+E     E+DAI++DL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYTTEVHYNGRTGLEAALNNEWDAILIDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GDKNVAKQTTITYRDLTIEKENRVVRRNSEMIELTKREYELLLTLMENVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   ++  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
 gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
          Length = 219

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD +L   I   LK E + V +V D G   +       F   +LDLGL  + G
Sbjct: 1   MRVLLVEDDASLGEGILTSLKPEGYTVDWVRD-GSSALHALTHESFGLAVLDLGLPRLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVLR LR A+  TPV +L+   +I D++ GL +GADDY+ KPF+  EL AR+RA++RRS
Sbjct: 60  LEVLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  +    ++++  ++ V   G  + L  KE+ ++  L  +    LT++     LY
Sbjct: 120 FNRPQPALEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E E   ++V I  LRKK          I TV G GY++
Sbjct: 180 GWGEEAESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 216


>gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
 gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato
           Max13]
 gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+      ++  L    FNV     G + +       +D +ILD+ +  I G+
Sbjct: 1   MKILVAEDEPKTGMYLQQGLLEAGFNVDRVLTGTEALHQALNESYDLLILDVMMPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++++R A    PV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  DVIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + I  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + ++
Sbjct: 121 GAPNLTSIKIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +    K  I+T  G GY+L
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFDTK-LIQTSRGMGYML 221


>gi|118480165|ref|YP_897316.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118419390|gb|ABK87809.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNETTFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 225


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  + + I   L S ++   V + GEDG++  K    D +ILDL L DI G E+
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDGMEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R++R +  STP+ ILS  +   D++ GL+ GADDYI+KPF+  EL  R+    RR    
Sbjct: 64  CRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + G A   I+ G L ++   + V +  + I+++ KE+ +++LL+       ++EM
Sbjct: 124 IGIKPNVGQAGE-IIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSREM 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++    +   ++ID  I ++R KL   +    +IET+WG GY   +N
Sbjct: 183 ILESVWGVEWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|116252033|ref|YP_767871.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256681|emb|CAK07769.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 219

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD AL  +I   + ++  +V +V  L + G  +     +D ++LDL L D  G
Sbjct: 1   MRVLLIEDDTALGAAIRDQIAADGHSVDWVNRLDQAGDAIVA-AAYDLVLLDLMLPDGLG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR 
Sbjct: 60  IPFLKGLRGRGDVTPVMILTALDQVTDRIAGLNAGADDYMVKPFDLAELSARIGSVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+    I  G L+++L A+++ + G  I LT +E+ + E    R    L+K      LY
Sbjct: 120 AGNPNPNITLGPLAIDLAARSITLNGKAIVLTAREWVLFEAFLQRPGQLLSKAQLEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E +   I+V + +LRKKL     G + IET  G GY L
Sbjct: 180 SFDREIDSNAIEVHVSRLRKKL-----GTHVIETERGLGYRL 216


>gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K  A  +   L  + F V V   GE+G+ L     +D IILD+ +    G+
Sbjct: 1   MRILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     TPV  L+   +I+D+V+GL+ GADDY+ KPF   EL+ARIR+I+RR  
Sbjct: 61  SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++         G R+ L+ KE+ ++ L   R    L++ +    ++D
Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  I+DV I +LR+K+ +    K  + TV G GYVL + 
Sbjct: 181 VHFDSDTNIVDVAIRRLRQKIDDPFPQK-LLHTVRGVGYVLEQR 223


>gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +I   L    + V  T  G+          +DA++LDLGL  + G 
Sbjct: 1   MRVLLVEDDAVLGDAIHRSLIKSGYAVDWTQDGQQADVALHEQVYDAVVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K   PV ILS    ++D+V GL  GADDY++KPF   EL AR+RA +RRS 
Sbjct: 61  EVLRRLRQRKQLVPVVILSAREGLDDRVHGLDLGADDYLTKPFKLPELEARLRAQIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I  G +  +   +TV V G  +  + +E  ++E L LR    ++KE  + +L +
Sbjct: 121 QVVTSYIDFGPMRFDSTDRTVTVNGALVEFSQRELSVLEALILRSGRVVSKESLVENLCN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I+V++ +LRKKL         I TV G GY+L + +
Sbjct: 181 WDVDVGNNAIEVYVHRLRKKLEPYG---ILIRTVRGLGYLLEKQS 222


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E+     T   ED IE  +  E   FD IILD+ + ++ 
Sbjct: 4   KILIVDDDKEIRNLISVYLENEDLK---TQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +       + +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K + L+  
Sbjct: 120 FKKYNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVA 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYETVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 226


>gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 226

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED K +   +  +L  E F V+ T  G DG +  K   +D I+LD+ L    G E
Sbjct: 3   KILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFKSGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV I+S    +  K+  L+ GADDYI+KPF+  E+VAR+ A +RRS  
Sbjct: 63  ILKEVRQFS-DIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRSHR 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             Q+   +   D++VN DAK V V    + LT KEY ++ELL   +N   TK      ++
Sbjct: 122 KTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYETIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   +   I  LR KL  A   K YIETVWG GY L
Sbjct: 182 QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223


>gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 223

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  +  ++      + G+       FD II D  L  + G 
Sbjct: 1   MKLLLVEDDAEIAEFIHKGLTEQGHSLCHEPDAKTGLVRAASESFDVIIFDRMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +R LR +++ +P+ IL+   SI D+V GL++GADDY+ KPF  EEL AR++A+ RR  
Sbjct: 61  DAIRVLRQSQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G L+++  ++ V   G  + L  +EYQ++ELL + +   +T+ M L  ++
Sbjct: 121 VSQASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +P   ++   + +LR K+ + A     I+TV G GYVL
Sbjct: 181 GFQFDPNTSLVQTHVSRLRNKV-DKAFNTELIKTVRGAGYVL 221


>gi|257439219|ref|ZP_05614974.1| transcriptional regulatory protein CutR [Faecalibacterium
           prausnitzii A2-165]
 gi|257198352|gb|EEU96636.1| transcriptional regulatory protein CutR [Faecalibacterium
           prausnitzii A2-165]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+ AL  +I   L+   ++V     GE  +EL     +D ++LDL L    G 
Sbjct: 1   MHLLVIEDEHALCETIVRSLRRLAYSVDYCYDGEKALELLGVECYDLVLLDLNLPKKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR     T V ILS  S +EDKV+GL +GA+DY++KPF+  EL ARIR++  R  
Sbjct: 61  TVLRALRQTDRETRVLILSARSEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  G LS +  ++T  V G  + LT KE  ++E L + +   +++E  ++H++D
Sbjct: 121 TQQNVLLSCGGLSFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELIDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     I V I  LRKKL  A  G + I    G GY++
Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220


>gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L ++++  L+ E F V     GED +   +    D I+LD  L  + G 
Sbjct: 1   MRILLVEDDENLCYTLQYQLEQEGFLVDTCMDGEDALFFIRERVHDLILLDRMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL+ALR  KI TPV  L+ +SS++DK+ GL  GADDY+ KPF  EEL+ARIR + RR  
Sbjct: 61  SVLKALRREKIFTPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIRCLSRRPQ 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    S+I  GD+S + D K +        L+ KE  ++E+        L ++  L+ ++
Sbjct: 121 KWEGSSVISLGDISFDPDQKKLFCHTKECSLSKKEGALMEIFLRNPGQILPRQTLLSRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +D +I  LR++L  +   +  ++ V G GY L
Sbjct: 181 GPDSEVEDGNLDNYIYFLRRRL-RSVDSRLELKAVRGVGYQL 221


>gi|283786785|ref|YP_003366650.1| transcriptional regulator [Citrobacter rodentium ICC168]
 gi|282950239|emb|CBG89875.1| transcriptional regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  I G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSESYALAVLDINMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL +GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q L   GDL+ + D     +Q   + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVQELQQLGDLAFH-DEGYFLLQQQPLALTPRELALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GY+L
Sbjct: 180 LNDEVSPESIELYIHRLRKKLH---GSNVRITTLRGLGYLL 217


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 13  KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R  +   +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 73  LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 247


>gi|94311936|ref|YP_585146.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|94312967|ref|YP_586176.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|94313900|ref|YP_587109.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|241765752|ref|ZP_04763697.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|93355788|gb|ABF09877.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|93356819|gb|ABF10907.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|93357752|gb|ABF11840.1| two component transcriptional regulator, winged helix family
           (Tn6048) [Cupriavidus metallidurans CH34]
 gi|241364378|gb|EER59508.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|254966516|gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98]
 gi|325528823|gb|EGD05874.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  +I+  LK  ++       G+  +       +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ++R      P+ I++    ++D++RGL  GADDY+SKPF   EL+AR+RA++RR  
Sbjct: 61  EVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A  ++  G   V LD  T E     G ++ L+ +E+ +++ L +R    L++    + 
Sbjct: 121 GTAAPVLSNG--VVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E E   ++  I  LR+KL     G   I+ V G G+++ + A
Sbjct: 179 IYGWGEEVESNAVEYLIHALRRKL-----GGEVIKNVRGVGWMVSKGA 221


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 74  TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA----AGGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+       A G+ +     IET  G GY++R
Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 244


>gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
 gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
          Length = 224

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL++ED+  L H + + LK  +  V   D  ED  E   F      D  ++DLGL D 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKDLSHQV---DSAEDAKEADYFLNESHPDIAVVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++  R   ++ P+ +L+   S ++KV+ L SGADDY++KPF  EELVAR++A++R
Sbjct: 58  DGLSMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  ++   +  ++L  K   V G  + LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+      +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-FHEQEVIVTVRGQGY 218


>gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220


>gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    +   +   G DG+ +    E+  +ILD+ L  + G+
Sbjct: 1   MRVLIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R  R
Sbjct: 61  QVLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GH     + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + 
Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRAKIDEGHSIK-LIQTVRGMGYVL 221


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +A  ++   + E F V +   GE+ +   +  +FD +ILD+ L  + GF 
Sbjct: 4   RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLDGFT 63

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           V R +R  + ST P+ +L+      DKV GL+ GADDY++KPF+  EL+AR+RAI+R   
Sbjct: 64  VCREIR--RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTR 121

Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                RSR  A  ++  GD+++NL +  V      + LT +E++++  L        ++E
Sbjct: 122 VAESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  ++      +V+ +DV + +LR+KL   +    YI+T  G GY
Sbjct: 182 ALLEEVWGYDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGY 228


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ L   I   LK+E + V     GE+ +EL +  +FD IILDL +  I G +
Sbjct: 10  KILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDGLQ 69

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
               +R+ + S  P+ +L+  S   DK+ G + GADDYI+KPFN  EL AR+RA++RRS 
Sbjct: 70  A--CMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSG 127

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +  G + ++ + ++    G  + LT KE+ ++ELL        ++E  LN
Sbjct: 128 AAVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLN 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +DV + +LR+KL        YI T WG GY L
Sbjct: 188 VVWGYEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYL 232


>gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK +   +E  L      V     G       +   +D ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDKLVGSGVEDGLIEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA+VRRS+
Sbjct: 61  DLLGWIRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I  G+L+V+    TV     RI LT +E  ++  L   +   L++    + LY 
Sbjct: 121 GRGTDTIEYGELTVDPALMTVVRGAERIALTSRECALLVELLANQGRPLSRAQLQDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+V +  LRKKL     G   I T+ G GYV+
Sbjct: 181 WNEEIESNAIEVHVSNLRKKL-----GAELIRTIRGVGYVV 216


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  IE  LK   + V     GE   E  K +  D I+LDL L  + G +
Sbjct: 5   KILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+ +  + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + 
Sbjct: 65  VCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQA 124

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              S    +   G L V  + + V ++G  I LT KE++++  L   +   L+++  L+ 
Sbjct: 125 LPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHG 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     + +I+DV I  LR K+   A    YI TV   GY L
Sbjct: 185 VWDYHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  +L+ E F V V   G   +E+      D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLR-QKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S++  G + ++++   V V+G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I +LR K+        +I TV G GY
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGY 222


>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 222

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 124/217 (57%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V VT  G + ++  +  + D ++LDLGL ++ G EV
Sbjct: 4   VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++R  RG 
Sbjct: 64  ARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGG 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+  +V G + ++ D++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 122 AEVPVVHG-VRIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                K +D+ I  LR+KL + A   +YI TV G G+
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGF 217


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F + V   G+ G+E      FD +ILD+ L  + GFE
Sbjct: 3   KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L+++  A+ V V    +  T KE+ +++ +    N  L+KE     
Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      ++  + V I KLR+KL        Y+ETVWG GY
Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGY 223


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + VY    GE+ +E     + D I+LDL L  + G E
Sbjct: 6   KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 66  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A S +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  
Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ ++    NY+ T  G GY LR
Sbjct: 185 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLR 232


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  AVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 131/232 (56%), Gaps = 8/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++++D++A+  S+   L    ++V++ + G   +E+ +  + + +ILD+ +  + G 
Sbjct: 1   MKIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G +Q  +   DL +N D + V   G  I LT  E+ +++LL       L++   L
Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++ G D P     ++V+I  LR+K + + G    I TV G GYVLR+ A 
Sbjct: 181 EEVW-GYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRDTAP 230


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F + V   G+ G+E      FD +ILD+ L  + GFE
Sbjct: 3   KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L+++  A+ V V    +  T KE+ +++ +    N  L+KE     
Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      ++  + V I KLR+KL        Y+ETVWG GY
Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGY 223


>gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 234

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ LA   +  L+     V ++  GE G++    + FDAI+LDL L    G  V
Sbjct: 8   ILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPARDGISV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++      D+V GL+ GADDY+ KPF+  EL+ARIRA+VRR+RG 
Sbjct: 68  CQRIR-EHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRARGQ 126

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A    S++V GDL ++  A T  + G  + LT  E+ +++ L+ R    L++E  +    
Sbjct: 127 AGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMELAK 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +E   + IDV I +LR+K+ +       I TV G GY
Sbjct: 187 GNAEEAFDRSIDVHISRLRQKIGDDPRHPTRIRTVRGAGY 226


>gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 233

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR RG + +     I  G
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 140

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++
Sbjct: 141 PLEVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DVFI  LR+KL  A G    + TV G G+VLR
Sbjct: 201 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 231


>gi|169629014|ref|YP_001702663.1| putative transcriptional regulatory protein PrrA [Mycobacterium
           abscessus ATCC 19977]
 gi|169240981|emb|CAM62009.1| Putative transcriptional regulatory protein PrrA [Mycobacterium
           abscessus]
          Length = 236

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  + +S+   L+   F+V V   G D +      E DA++LD+ + ++ G  
Sbjct: 10  KVLMVDDDPDVRNSVARGLRHSGFDVRVAVDGRDALTQLAADEPDALVLDVQMPELDGVA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV----ARIRAIVR 117
           V+ ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELV    A +R    
Sbjct: 70  VVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLRALLRRRGA 129

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G A S I  G ++V++  + V V G R+ L+ +E+ ++ +L+      L++   L  
Sbjct: 130 GSGGLADSAITVGQITVDVSRRLVFVNGERVELSKREFDLLVVLAENTGVVLSRTRLLEL 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E  + DVF+  LR+KL  A G    I TV G GYV+RE
Sbjct: 190 VWGYDFDVETNVADVFVSYLRRKL-EAGGAARVIHTVRGVGYVMRE 234


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA----AGGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+       A G+ +     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIR 239


>gi|146279695|ref|YP_001169853.1| histidine kinase A domain-containing protein [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557936|gb|ABP72548.1| histidine kinase A domain protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 220

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L+   F+       ED         FDA++LDL L D  G 
Sbjct: 1   MRILVVEDDAVLSDGLRAGLRIAGFSPETVASLEDARAALLAGRFDAMVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R A ++ PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  DLLVEVRSAGLAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +++      ++++L A         + L+ +E+ ++  L  R    L+K      LY 
Sbjct: 121 ALSETRPAWNGVTLDLAALVASRADGPVPLSPREFSVLRALMDRPRAVLSKAQLEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   ++V I KLR KL     G ++IETV G GY L E
Sbjct: 181 WQEEIESNAVEVHIHKLRSKL-----GHDFIETVRGAGYRLAE 218


>gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  ++  +   L+   ++V + + G D   L    E+  I+LD+ L DI G 
Sbjct: 1   MEILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIMLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L+  R  KI+TP+ ++S +   EDK+R L  GADDY++KPF   EL+A I A+ RR+ 
Sbjct: 61  ELLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAG 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++   DL +  D   VE  G  I LT +E+++++LL   K+  L++   L+ 
Sbjct: 121 LKYDVASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDT 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +    ++DV+I  LR K+ +  G    I+TV GRGY++
Sbjct: 181 VWGVNYDTNTNVVDVYISYLRNKI-DTDGHVKLIKTVKGRGYMI 223


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 39  RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 99  ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 158

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 159 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 217

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 218 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 264


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R  +   +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 65  LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQQQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLR 222
                +  I++ +I  LRKK     + +  G K+     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMIR 239


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   + L L+ E + V     GE+ +   +    D +ILD+ L    G+ V
Sbjct: 5   ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A  + P+ +L+      D+V GL  GADDY+ KPF+  ELVAR++A++RR+   
Sbjct: 65  CREIR-AMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLA 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q    ++    L+VN D+  VEV G R+ LT KE++++  L+       ++E  L++++
Sbjct: 124 NQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D     + + +D  I +LR+KL +    + YI TVWGRGY
Sbjct: 184 DYDYLGDPRTVDTHIKRLREKLESGV-KQRYIRTVWGRGY 222


>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 255

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 134/247 (54%), Gaps = 29/247 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L+ E + V   + G+ G+EL   ++ D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR+  
Sbjct: 63  VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122

Query: 122 HAQS-----------------------------LIVTGDLSVNLDAKTVEVQGHRIHLTG 152
              S                             +I  GD+ ++++   V V+G  I +T 
Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           KE++++  ++ R N TL++E  L  L+      E +I+DV +  LR+K+        YI 
Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLWRFDYAGETRIVDVHVSHLREKIELDTKNPEYII 242

Query: 213 TVWGRGY 219
           TV G GY
Sbjct: 243 TVRGFGY 249


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L +E + V V   G   ++       DA++LD+ L  I G EV
Sbjct: 18  ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLEV 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++ A   TP+ +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 78  TRRIQ-ADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVERA 136

Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q+++        V GD++++   + V   G  +HLT  E++++ +L+    T LT+E  
Sbjct: 137 QQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRERL 196

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+KL     G + I TV G GY     A 
Sbjct: 197 LAEVWDWADASGTRTVDSHIKALRRKL-----GPDLIRTVHGVGYAFEPPAS 243


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 135/224 (60%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD  +   I+L L+ E + V     G   ++  +    D ++LD+ L ++ GF 
Sbjct: 4   KVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMNGFT 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VL  +R    ST  PV +L+    +ED+VRGL+SGADDYI KPF+ EEL+AR+ A++RR 
Sbjct: 64  VLERIR-EDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR- 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G+++  I+ G++ +NL ++ V+V G  + L+  E+ ++++L       ++K+  L  ++
Sbjct: 122 KGYSEK-ILYGNIEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     +++V+I  LRKKL +A      I+TV G GYV +E
Sbjct: 181 GTEEWGNPNVVEVYINYLRKKLGSAG---KIIKTVRGVGYVAKE 221


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ L   + L L  E ++V     GE+G+E  K   FD +ILDL L  I G  +
Sbjct: 4   ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDGLTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA+ RR+   
Sbjct: 64  CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTSP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  GD+++N+  K V+  G  I LT KE+ ++ LL+       +K+  ++ ++
Sbjct: 123 FVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   ++V I KLR+K+ +      +I T WG GY ++
Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +A      LK   +   +   G  G+E      ++ II+DL L D  G+E+
Sbjct: 4   VLIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLMLPDKNGYEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++A+R  +   P+ ++S  S   DK+RGL  GADDY++KPF+  EL AR+++ + R    
Sbjct: 64  IKAVR-NRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRYERL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +I    L +N  +  V V G  I LT KEY+++  L+   N   TKE   N 
Sbjct: 123 KGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHIFNT 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      +   + V I K+RKK+   AG   YIET+WG GY
Sbjct: 183 IWGDDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGY 224


>gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
 gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+IED+  L H + +  +     V   D  ED  E   F      D  I+DLGL D 
Sbjct: 1   MRILIIEDNILLRHHLSVQFRDAGHQV---DAAEDAKEADSFIAEGTPDVAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   I+ P+ +L+   S ++KV  L +GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGISLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A   +      ++L  K   + G +I LT  EY ++E L   +N  ++K+  +  
Sbjct: 118 RNMGIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+       + + TV G+GY
Sbjct: 178 LYPDAELKESHTIDVLMGRLRKKILEKYPD-DVVVTVRGQGY 218


>gi|196033103|ref|ZP_03100516.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994532|gb|EDX58487.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTEEGHFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
 gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   L+ E + V     G +  E      +D +ILDL L  + G 
Sbjct: 1   MKILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERILVESYDLVILDLNLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R  K    V ILS  SS+ ++V GL  GADDY++KPF  EEL AR+R+++RR+ 
Sbjct: 61  DILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++   + +      + LT KE++++E L L    T+++E  L H++D
Sbjct: 121 VPQSTAVTAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               P    + + I  LRKKL  A  G + I T  G+GY L
Sbjct: 181 TESNPFSHSVRMHISSLRKKLKEAL-GHDPIATKIGQGYYL 220


>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V + G+ G EL +   FD +ILD+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N + +    +   I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+ +    K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222


>gi|297156212|gb|ADI05924.1| two-component regulator CutR [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED + LA S+  +L+ E   V V   G D +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDQRTLADSVARVLRREGMAVDVAYDGADALERTAIVDYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L  A+    V +L+   ++ ++V GL  GADDY+ KPF   ELVARIRA+ RR++
Sbjct: 61  QVCRTLMAAEAPARVLMLTASGTVAERVEGLGLGADDYLPKPFAYAELVARIRAVARRTQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++V G+L ++   +     G R+ L+ KE+ ++E L    N  ++ E  L+ ++D
Sbjct: 121 RATPPVLVHGELRLDPAQRIATRAGARLPLSPKEFAVLEYLLANHNRVVSAEELLDRVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    +   + +LR KL    G    IETV   GY
Sbjct: 181 EAADPFTTTVKATMNRLRAKL----GDPPLIETVPRAGY 215


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 19  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 79  VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 199 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241


>gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A+++   LK++ F V V   GE G+E  +F  +DAIILD+ L  + G+
Sbjct: 1   MRLLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR      PV +LS      D+  GL  GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  EVIRTLRRENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDL+++    TV  +   I L+ +E+ ++E L       +TK   L+H++ 
Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++  V +++V+I  LRKK+ +   G++ ++TV G GY L
Sbjct: 181 ASEDTHVNLVEVYIGYLRKKI-DTPFGRSSLQTVRGAGYRL 220


>gi|134296855|ref|YP_001120590.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134140012|gb|ABO55755.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 243

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQSFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANERVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCL 218


>gi|15836925|ref|NP_297613.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|9105147|gb|AAF83133.1|AE003885_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
          Length = 231

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LLIED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  LR     TPV +L+   +IED+V  L  GADDY+SKPF+  E  AR R ++R
Sbjct: 58  DGLQLLSELRQRGDRTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A  + + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RNRGSASEVVRIGSFEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L++  D      I++++ +LR+KL  A      I TV G GY++    +D   E
Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRGAGYLIEPIVEDSGHE 228


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 3   KILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLR 229


>gi|70729347|ref|YP_259084.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343646|gb|AAY91252.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED     H +   L    FN  +   G  G       ++  +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   +++D+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLEMPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             AQ + +   DL ++L  + VE    RI LT KE+ ++E+L  R+   L K +  + ++
Sbjct: 121 AVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEE 223


>gi|107026106|ref|YP_623617.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692710|ref|YP_838243.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895480|gb|ABF78644.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650710|gb|ABK11350.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  +A  I   L++    + +   G DG+       +D + LD  L D+ G  +
Sbjct: 4   ILTIEDDPLIADHIAHTLRAAGHQIDIARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121
           L  +R   + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI  ++ RR RG
Sbjct: 64  LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  G+L+++L  +   +    + L   E +++E +       LT+ M    ++ 
Sbjct: 124 ARVETVLRAGELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +P   +IDV I +LRKK+ N  G    I T+ G GY+L
Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|325924405|ref|ZP_08185939.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325545115|gb|EGD16435.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL   AG    I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKL---AGAPLRIVTVRGAGYKLEE 220


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + LK + F V     G + I+  + +  DA+ILD+ +  + GF+ 
Sbjct: 1   MLVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDA 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ LR      PV  L+   ++ED+V GL  GADDY++KPF+ EE+VAR+R I+RR    
Sbjct: 61  VKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTL 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     + +   DL ++ D+  V   G  + L+  E+ ++  L L   T L+K   L+H+
Sbjct: 121 SAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  +++ ++  LRKK+  A      I T+ G GYVLRE
Sbjct: 181 WDYDFGGDGGVVESYVSYLRKKIDTAE--PRLIHTIRGVGYVLRE 223


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 74  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 132

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK      
Sbjct: 133 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 193 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 236


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G LS++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDVAG-LSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 255

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D++AL + +++ L+ E + + V     + ++  +    D ++LD+ L D+ G 
Sbjct: 30  IRVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR +   TP   L+   S+ D+V GL +G DDY++KPF+ EELVAR+R ++RRS 
Sbjct: 90  GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRRSA 149

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A    +SL V GDL+++  ++ V   G  + LT  E++++ LL   +   L++   L 
Sbjct: 150 YLAPADDESLSV-GDLTLDAASREVTRAGEPVSLTSTEFELLRLLMRNQRKALSRTDILR 208

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D        I+D+++  LRKK+   AG    I TV G GY+LR
Sbjct: 209 KVWDYDFGGRTSIVDLYVSYLRKKID--AGRDPMIHTVRGVGYMLR 252


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK +TP+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q +        +V   + +NL   +V V    + +  KE +++  L+   N   T+E 
Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR K+ +       + TVWG GY
Sbjct: 185 LLDQIWGYDYMGDTRTVDVHIKRLRAKIKDHPTWS--LGTVWGIGY 228


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLT 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q++   IV G+L ++L  +TV  +G  + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQRL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + A     I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNADEARKIKTVWGKGYLF 226


>gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  ++     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ ++  K   PV IL+  SSI+DKV+GL  GADDY++KPF   EL AR+R   RR  
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD++++  A +V +    + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK  +     ++I+T+ G GYV+
Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   ++  L    + V V   GED I L     +D +ILD+ +  I G 
Sbjct: 1   MKILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K    + +LS    ++DKV GL +GADDY++KPF   EL+ARIRA++RR+ 
Sbjct: 61  EVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I    L+VNL  + V+  G  I LT KE+ ++E     KN  LT+ M    +++
Sbjct: 121 EDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DV+I  LRKK+         I TV G GY+L+
Sbjct: 181 IDFLTDTNVVDVYINHLRKKID-KDFDDKLIYTVRGVGYILK 221


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 16  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 76  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 134

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK      
Sbjct: 135 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 195 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 238


>gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   L    + V     GE+G  L     +DA++LDLGL    G 
Sbjct: 1   MRILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A+ S PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G + ++  +  V V+   + LT  EY+++  + L     +++   + HLYD
Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKKL     G + IET+ G GY  R  A  ET
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GFDIIETLRGLGY--RVPAAGET 222


>gi|171317083|ref|ZP_02906287.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171097784|gb|EDT42608.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD+ +AH +   LK   F V     G +G+      ++D + LD  L  I G  +
Sbjct: 4   VLIIEDDEIVAHDMATHLKDRGFGVEWVPDGREGLARALSRQYDVVTLDRMLPGIDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   + TPV ++S +S ++++V GL++G DDY++KPF+ EEL AR+  ++RR +  
Sbjct: 64  VTTMRSVGVRTPVLMVSALSDVDNRVGGLRAGGDDYLTKPFDPEELTARVEVLLRRRQPA 123

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  T   G L ++L  + V   G  I L   E +++E +    + T+T+ M    ++
Sbjct: 124 SVQVATTLQVGPLELDLITRCVRRDGREIGLLPTECRVLEFMMRHAHQTITRSMMFEAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R +P   +IDV + +LR K+ +  G    I+TV G GY L
Sbjct: 184 GYRFDPGTNVIDVHMRRLRAKI-DPTGVTPMIQTVRGSGYRL 224


>gi|134287719|ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134132369|gb|ABO60104.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  +I+  LK  ++       G+  +       +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ++R      P+ I++    ++D++RGL  GADDY+SKPF   EL+AR+RA++RR  
Sbjct: 61  EVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A  ++  G   V LD  T E     G ++ L+ +E+ +++ L +R    L++    + 
Sbjct: 121 GTAAPVLSNG--VVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E E   ++  I  LR+KL     G   I+ V G G+++ + A
Sbjct: 179 IYGWGEEVESNAVEYLIHALRRKL-----GGEVIKNVRGVGWMVSKGA 221


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+ EDDK +A+SI L L++E F+V     G + IE+ K    D II+DL +  + G 
Sbjct: 4   FKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ LR      P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR  
Sbjct: 64  EAIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYH 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    +  +I  G++ +N   KT  V    I+LT  EY+++E L    N   + E    
Sbjct: 123 SYDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYE 182

Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++   +EP  E K + V I ++R+K+        YI+  WG GY   +N +
Sbjct: 183 HVW---NEPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 137/226 (60%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL++ED+ A+++ I++ L +     Y  D   DG E     +   FD I+LD+ L +I 
Sbjct: 3   RILIVEDEPAISNLIQMNLAAAG---YCCDCAFDGAEAADRLDQEGFDLILLDIMLPEID 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E++  +R  +I  PV  L+  ++ EDKV+GL++GADDY++KPF   EL+AR+  ++RR
Sbjct: 60  GYELMDYIRPLEI--PVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S +  GDL +++ A+ V+ QG  ++LT KEY+++ LL   KN  L ++     +
Sbjct: 118 CQ-KTESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKI 176

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +D+ + +LRKK+    G ++ I+TV+  GY L ++
Sbjct: 177 WGSGYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218


>gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
 gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD   +  I   L+ E   V V   G DG+      ++D +ILD  L ++ G 
Sbjct: 1   MKLLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR A  +TPV +L+ M ++ED++ GL +GADDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +  G+L+++L ++ V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+         I+TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDRPF-DVELIQTVRGAGY 219


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 129/229 (56%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE+ +     +  D I+LDL L  + G+E
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREVR-HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      ++ ++   DL+VNL   +V  +G+ + +  KE +++  L+   N   T+
Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           E  L++++      + + +DV I +LR+K+    G  ++ + TVWG GY
Sbjct: 185 EQLLDNIWGYEYVGDTRTVDVHIKRLREKI---PGNTHWSLSTVWGIGY 230


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ ++ + + ++LK E + V     G  G+   + +  D IILD+ L DI G E
Sbjct: 5   KILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDINGNE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R +  S P+ +L+  S I DK+ GL+ GADDY++KPF+  EL+ R++A++RR+  
Sbjct: 65  VCKMVR-SNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++   D+ +NL  K +     RI LT  EYQ++EL     +   T+E  L  ++
Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D+ I +LRKK+ + +    YI T +G GY  +
Sbjct: 184 GYDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCFK 226


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G  G+E     EFD  ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKIREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  ++    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  +    ++ L  E F +   D GE G+EL +  + D  +LD+ L  I GF
Sbjct: 3   IKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    +  + +L+  +   DK+ GL+ GADDY++KPFN  EL+ RI++++RRS 
Sbjct: 63  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  +  D +  LD  ++T    G  I LT  E  +I+LL       +T++  ++  
Sbjct: 123 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKA 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV + +LR K+   +    YI TVWG GY
Sbjct: 183 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGY 223


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I L L+ E + V +   G   +E    +  D +ILD+ +  + G EV
Sbjct: 6   ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +ALR   +STP+  LS  S+  DK  GL +G DDY+SKPF+  EL+ARI+A +RR+R  
Sbjct: 66  CQALR-KNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRIL 124

Query: 121 -----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +AQ+  +  GDL++NLD  +V V G  I L+ KE+Q++ LL+   N   + E  
Sbjct: 125 ENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L+      + + + V I  +RKK+   A     I+TV G GY
Sbjct: 185 FETLWATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGY 229


>gi|332663776|ref|YP_004446564.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332590|gb|AEE49691.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L+ SI+  L SE++     D  +  +E    Y +D I+LDL L    G 
Sbjct: 1   MKLLIIEDEPELSKSIKEYLSSESYLCEFADTFQQALEKIALYSYDCILLDLMLPGGDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+  +    V I+S  +++EDKV GLQ GADDY+SKPF+  EL ARI A++RR +
Sbjct: 61  KILEELKKQQKEEGVIIISAKNALEDKVLGLQLGADDYLSKPFHLSELAARIYAVIRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
               +LI   +L ++L AK++ V  + + LT KE+ ++      KN  + K     HL  
Sbjct: 121 FANSNLIEQNELKIDLLAKSIWVNENLVSLTKKEFDLLLYFVGNKNRVIAKGALAEHLSG 180

Query: 179 -----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 D  D      +   I  L+KKL++ AG   YI+TV+G GY
Sbjct: 181 DFADMLDNHD-----FVYAHIKNLKKKLTD-AGCSLYIKTVYGTGY 220


>gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   ++  L+   F V     GE      +  ++  I+LDLGL    G 
Sbjct: 1   MRILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGLPKQDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR     TPV I++   +I D+V GL +GADDY+ KPF  EEL+ARIR + RR  
Sbjct: 61  TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q++  +G L ++     V +    + +T +E+ ++E L  R N  +T+E     LY 
Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   + V I  LR+KL     G + I TV G GY + E
Sbjct: 181 WNEEVESNTVQVHIHHLRQKL-----GTDVIVTVRGIGYRIGE 218


>gi|290958605|ref|YP_003489787.1| two component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260648131|emb|CBG71239.1| putative two component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +A S+   L    F V   + G  G  L     +D ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDEPVAESLRRGLLRYGFEVEWVNTG--GAALSYGGPYDVVLLDLGLPDTDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +ALR  +   P+ ++S  S   D+V GL+ GADDY+SKPF   E++ARIRA++RR +
Sbjct: 59  DVCKALR-DRSQVPIIVISARSDETDRVVGLELGADDYVSKPFGVREVIARIRAVMRRVQ 117

Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A       D     L+V+  A  V + G  + L  KEY ++  L+      +++E  +
Sbjct: 118 PRAADAPAGPDRYGPRLTVDRKAARVHLDGTEVGLAPKEYDLLAFLTEEPGALMSREQIM 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++D       K +DV +  LR+KL+ A      IE V G G+ L  N K++
Sbjct: 178 EAVWDANWFGPTKTLDVHVAALRRKLAGAI----TIEAVRGVGFRLIVNEKEK 226


>gi|218508476|ref|ZP_03506354.1| two-component response regulator protein [Rhizobium etli Brasil 5]
          Length = 199

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 5/175 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           +DAIILD+G  ++ G  VL   R A  + PV IL+      DKV G+ +GADDY++KPF+
Sbjct: 21  YDAIILDIGKPEMDGVTVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFH 80

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
            EE++ARIRA++RR+ GHA S IV G + ++  +    V G  + LT  EY+++  L   
Sbjct: 81  VEEVLARIRALIRRAAGHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHH 140

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++   + H+YD   + +   I+VF+ +LRKK+     G + IETV G GY
Sbjct: 141 MGEVVSRTELVEHMYDQDFDRDSNTIEVFVGRLRKKM-----GVDLIETVRGLGY 190


>gi|170693423|ref|ZP_02884582.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141578|gb|EDT09747.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 290

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRIL+ EDD  LA     +++S   + Y  D  + G+E         FD +ILDLGL  +
Sbjct: 24  MRILIAEDDSILADG---LVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRM 80

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ R
Sbjct: 81  SGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTR 140

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +++  G L  +   +   +    I L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 141 RGAGGGPTIVRHGSLGFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDH 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +  +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 201 LCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCL 241


>gi|126174120|ref|YP_001050269.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|217973566|ref|YP_002358317.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411340|ref|ZP_07392954.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305338|ref|ZP_07585086.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125997325|gb|ABN61400.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|217498701|gb|ACK46894.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350195|gb|EFM14599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911641|gb|EFN42066.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 219

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V   +  +  ++  K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  ELLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + ++ G L ++L+ + V  +   + L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKKL+N       I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217


>gi|332669831|ref|YP_004452839.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338869|gb|AEE45452.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 213

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/215 (34%), Positives = 125/215 (58%), Gaps = 6/215 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D++ L  ++   L +E F V V   GE G++L   +++DAI+LD+ L    G++V+ 
Sbjct: 1   MVDDERGLTSALHRGLSAEGFAVDVAHDGEAGLQLALEHDYDAIVLDIMLPRRNGYDVVT 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
           ALR   + TPV +LS      D   GL  GADDY++KPF    LVAR+RA++RR      
Sbjct: 61  ALRAQDVRTPVLLLSAKDGEYDVADGLDVGADDYLTKPFAFVVLVARLRALLRRPPQVRP 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           +++  GDL ++  A+TV   G  + LT +E  ++E L    +  + K    +H+++G  E
Sbjct: 121 AVLAVGDLVLDPAARTVTRAGEPVVLTVRELALLEYLMRHADRVVGKVELRDHVWEGTGE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +V +++V++  LR+KL     G++ + TV G GY
Sbjct: 181 -DVNVVEVYVGYLRRKL-----GRDAVATVRGAGY 209


>gi|126737572|ref|ZP_01753302.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126720965|gb|EBA17669.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +       L +    V   + G D +      ++D +ILD    ++ G 
Sbjct: 1   MRVLLLEDDGEIGKWTIKGLMTAGHVVDWLESGRDALLSATTRDYDVLILDRMTPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR AK+ TP  +L+ M  +ED+V GL++GADDY+SKPF   EL+ARI A+ RR +
Sbjct: 61  SVLKTLRAAKVMTPALLLTAMGEVEDRVEGLEAGADDYLSKPFAMTELLARITALSRRRQ 120

Query: 121 GHAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A + +   +   L +++ A+    +G  I L  KE++++E+L   K    T+ M L  
Sbjct: 121 GEATTTLTKLEHKGLELDILAQKCSYKGEIIPLNPKEFKLLEVLMRSKGRVQTRAMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  + +LR K+      K  I TV G GYV 
Sbjct: 181 VWDINFDPATSVVETHMSRLRNKVEKPFDLK-LITTVRGAGYVF 223


>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRETH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L ++ F +     GE G++L +  ++  I+LD+ L  + GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H  SL       ++   ++VNL A+   + G  + LTG EY+++ LL       ++KE 
Sbjct: 120 -HINSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R     + ID+ +  +RKK++    G+  I+T+ G GYV 
Sbjct: 179 ISEEVLGRRLASFDRSIDMHVSNIRKKIAEHIPGER-IKTMRGTGYVF 225


>gi|291562324|emb|CBL41140.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED++AL  +I   L+   ++V     GE  +EL     +D ++LDL L    G 
Sbjct: 1   MHLLVIEDERALCETIVRSLRRLAYSVDFCYDGETALELLGVERYDLVLLDLNLPKKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     T V ILS  S +EDKV+GL +GA+DY++KPF+  EL ARIR++  R  
Sbjct: 61  TVLRTLRQTDRETRVLILSARSEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  G L+ +  ++T  V G  + LT KE  ++E L + +   +++E  ++H++D
Sbjct: 121 TQQDVLLSCGGLTFDTRSRTATVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     I V I  LRKKL  A  G + I    G GY++
Sbjct: 181 NSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220


>gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    +   +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R  R
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GH     + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + 
Sbjct: 119 GHPANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHSIK-LIQTVRGMGYVL 221


>gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ L  +I   LK   ++V     G   +++     FD ++LDL L D  G 
Sbjct: 1   MHILVVEDERILCETIARSLKRLAYSVDCCYDGITAMQMLADDNFDLVVLDLNLPDADGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     T V ILS  S + DKV GL +GA+DY++KPF+ EEL ARIR++  R  
Sbjct: 61  TVLRTLRKTDRDTKVLILSARSEVSDKVDGLDAGANDYLAKPFHLEELAARIRSLTLRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GD+S +  ++   V G  + LT KE  ++E L + +   +++E F+ H++D
Sbjct: 121 TQNDVVLTCGDVSFDTKSRKAIVGGEPLPLTRKETGILEYLMVNRGRPISQEEFIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     I V I  LRKKL  +  G + I    G GYV+ E
Sbjct: 181 NSVDNFSNSIRVHISALRKKLRTSL-GYDPIRNRIGEGYVMGE 222


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK+EN++V+     ++ +   +  + D  +LD+ + DI GF
Sbjct: 1   MNILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +LR +R   ++ PV +L+      DK+ G   GADDYI+KPF   ELVAR++A +RR  
Sbjct: 61  TILRKIR-ETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S    + +I    L +N + + V +    I LT  E+ ++  L   + T ++ E  
Sbjct: 120 LYNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++  +       + V I  LR+K+ +AA    YI+TVWG GY +
Sbjct: 180 FQEIWGEKYFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTI 226


>gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 217

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +LL+EDD +L+ ++   L ++ F   +    E   E       D I+LD+ L +    GF
Sbjct: 1   MLLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEAGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR A    P+  L+   S+ D+VRGL+ G DDY++KPF   ELVAR+RA+ RR  
Sbjct: 61  ELAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPFALAELVARLRALARR-- 117

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +  +V  G L V L+ + V  +G  + LT KEYQ++EL  +      T+E  L  ++
Sbjct: 118 GEVRPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLERVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +  +IDV++  LRKKL +     N IETV G GY   E
Sbjct: 178 GPGFESDSNLIDVYVKNLRKKLYD-----NVIETVRGLGYRFAE 216


>gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  S++  L+ +         G+          +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR +  S PV +++   +I D++RGL +GADDY+ KPF+ +EL AR+RA+ RR  
Sbjct: 61  DVLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G L +N     + + G  + L+ +E+ +++ L  +    L++      LY 
Sbjct: 121 GRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V+I  LR+KL     G   I+ + G GY++
Sbjct: 181 WGDEIESNAVEVYIHSLRRKL-----GAEQIKNIRGVGYLV 216


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 130/226 (57%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD  L   +   L+ +++ +   + GE  ++      +D I+LD+ L  + G 
Sbjct: 6   MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A ++TPV +L+    +ED+V+GL  GADDY++KPF+  EL+ARIRA++RR  
Sbjct: 66  SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRD- 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS+N  ++TV +    I LT KE+ ++E L   + + +++     H++ 
Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184

Query: 181 GRDEP--EVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGYVL 221
              +P      +DV I  LRKK+S    G  Y   I T+ G G+++
Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKIS--PPGDKYPPIIRTIRGIGFII 228


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L++  +       GE  +     +  D I+LDLGL D+ G ++
Sbjct: 6   ILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHNPDVILLDLGLPDMDGIDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R +   TP+ +LS  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIR-SWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLNDA 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     S+   G++ ++  A TV + G  +HLT  EY+++ LL+      LT      
Sbjct: 125 GDSAAAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTYITK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 KIWGSAWDNDVASLRVFMATLRKKIEPDPSNPQYIQTHIGVGY 227


>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
 gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 117/202 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  ++  + +   V   G DG++     ++D I+LD+ L  + GF
Sbjct: 1   MRILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQYDVIVLDVMLPGLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A  STPV +L+      DKV GL  GADDY++KPF+ EEL+ARIRA+ RR  
Sbjct: 61  EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL++ L  +++      + L  KE+++++LL    +  + K+  +  ++ 
Sbjct: 121 EVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMKLLLANSSAVVPKDDIITRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
              + E   ++V++  LRKKL+
Sbjct: 181 LESDAEDNNVEVYVSFLRKKLA 202


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   +   LK   + V     G D + L     F  I+LDL L  + G E
Sbjct: 5   KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ I++  +   DKV GL+ GADDYI+KPF+  E++ARI+A++RR+  
Sbjct: 65  VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124

Query: 122 HA------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         +++++ GDL ++ +   V   G  I LT KE++++     R+   L
Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  LNH++      E +I+D+ I  LR+K+         I TV G GY
Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGY 234


>gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 225

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS---ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILL+EDD     +IE ++K    +  N+     G  G+ L    ++D +ILD  L  +
Sbjct: 1   MKILLVEDDTT---TIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L ALR     TPV ILS +  ++++V+GL++G DDY++KPF   EL+ R   ++ 
Sbjct: 58  DGLKLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLML 117

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R      ++ +  G+L + L  + V + G+ + L  KE+Q+++ L    N  +++ +   
Sbjct: 118 RGLAKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   +P   +IDV I KLR+K      G+  IETV G GY LRE 
Sbjct: 178 AVWDYHFDPRTNVIDVHIAKLRRKFEELGFGE-LIETVRGAGYRLREG 224


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A   +  L+   F+V +   G+ G++     +F+ IILDL L ++ GFE
Sbjct: 3   KILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKKVREKK-NTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A  +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRFK 228


>gi|257887434|ref|ZP_05667087.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257823488|gb|EEV50420.1| transcriptional regulator [Enterococcus faecium 1,141,733]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 136/225 (60%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           +++L+IEDDK L+++I+ +L +  E   VY    G +G+   +   +D  ILDL + ++ 
Sbjct: 2   IKLLVIEDDKVLSNNIKEILTTIGEITQVYN---GSEGLFELESGVYDLAILDLMMPEMN 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EVL  LR  KI TPV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++R
Sbjct: 59  GYEVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKR 118

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + 
Sbjct: 119 SLGLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +  + +++V++  LRK L +    K  I+T+   GY+L+
Sbjct: 179 IWGFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 133/224 (59%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  MLK E +  +V   G +GI+  +    D ++LD+ L  + G +
Sbjct: 3   RILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARI+A++RR RG
Sbjct: 63  VCRELR-SRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRR-RG 120

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A++     +V G ++++++   V V G  + +  KE++++E+L   +   LT+   ++ 
Sbjct: 121 EAEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV I +LR K+    G   +I TV G GY L
Sbjct: 181 VWGSDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKL 224


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 14  ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 74  VRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 132

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK      
Sbjct: 133 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 193 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 236


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++++A   +  L+   F V V   GE G+ L     F+ IILDL L  + GFE
Sbjct: 12  KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ I+S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 72  ICRQVREQK-NTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQS 130

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R +   + + G + ++  A+ V V G     T KE+ ++  L+   N   TK+  
Sbjct: 131 LTSGARSNNDIIEIRG-IKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDEL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 190 FKEIWDMESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRFK 237


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G++     ++D  ILDL L  + GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRDEK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228


>gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P  
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      
Sbjct: 118 RQSGRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220


>gi|162451560|ref|YP_001613927.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161162142|emb|CAN93447.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 256

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +A  +   L  E   V+V +            ++D +++D  L D  G 
Sbjct: 34  MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    +TP   L+    + ++V GL  GADDY+ KPF+ EEL+ARI A+ RR+ 
Sbjct: 94  DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRA- 152

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++ + V  DL ++L A  VE  G  IHLT KE+ ++  L+      L++   L  ++D
Sbjct: 153 GRSERVEVA-DLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWD 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +P   ++DV I  LR K+      +  I TV G GYVL E  +
Sbjct: 212 VGHDPGTNVVDVAISALRAKVDRGF-ARPLIHTVRGVGYVLEERPR 256


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 224


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D ++    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 72  AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 131

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DL ++L  + V   G  + LT  E+ ++E+        LT+E
Sbjct: 132 AAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245


>gi|293553530|ref|ZP_06674158.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1039]
 gi|291602407|gb|EFF32631.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1039]
          Length = 224

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 135/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++EDDK L+++I+ +L +      V D G +G+   +   +D  ILDL + ++ G+
Sbjct: 2   IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  KI TPV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS 
Sbjct: 61  EVLAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + ++
Sbjct: 121 GLFDENVLKYKDISYDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + +I+V++  LRK L +    K  I+T+   GY+L+
Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  129 bits (324), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGFE 61
           IL++ED++ L  ++E  L+ E +       G  G+E        D ++LDL L DI G E
Sbjct: 5   ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISGTE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R LR A+   S PV +L+      D+V G + GADDY++KPF+  EL+ R+RAI+RR 
Sbjct: 65  VCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILRRA 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++  A S +  GDL V++    V V G+ I LT  E++++  L  R     T++  L+ 
Sbjct: 125 GTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLLSD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        + +D  + +LRKKL +A    +YIET+ G GY  R++
Sbjct: 185 VWGMHAGLTTRTVDTHVTRLRKKLGDAG---SYIETLRGVGYRFRDS 228


>gi|269219092|ref|ZP_06162946.1| DNA-binding response regulator TrcR [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211239|gb|EEZ77579.1| DNA-binding response regulator TrcR [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 224

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A++  +   L  E ++V++ + G   IE       D  ILDLGL D+ G +
Sbjct: 3   KMLLVEDDTAISGPLLRALGREGYDVHLAETGRGAIEAMSG-GVDVAILDLGLPDMDGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R  R      P+ IL+  S   D V GL +GADDY++KPF   EL+AR+RA++RRS  
Sbjct: 62  VARHARSQGWIFPILILTARSEEVDMVVGLDAGADDYVTKPFRLAELLARVRAVLRRSEA 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I   DL++++ A  V      + ++GKEY ++ +L+      +++   +  ++D 
Sbjct: 122 SESDVIRVQDLTIDVPAHRVVRGTTELGVSGKEYDLLVVLARNAGQAVSRADIMRDVWDA 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   K +D+ +  LR+KL ++     YI TV G G+ L
Sbjct: 182 PEDDASKKLDMHVSWLRRKLGDSVSDPRYISTVRGVGFRL 221


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E  +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKETIR 232


>gi|261378254|ref|ZP_05982827.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685]
 gi|10880475|gb|AAG24269.1|AF139614_1 BasR [Neisseria cinerea]
 gi|269145335|gb|EEZ71753.1| DNA-binding response regulator [Neisseria cinerea ATCC 14685]
          Length = 222

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G           +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R A  + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+ +  G LS+N     VE+   R  + L+ KE+ +++ L  R    L++    + +
Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAERRQVALSNKEFAVLQALLARPGVILSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y    E E   +D  I  LRKKL     GK  I+ V G G+++
Sbjct: 181 YGWGAEVESNAVDFLIHALRKKL-----GKENIQNVRGVGWLV 218


>gi|169335320|ref|ZP_02862513.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258058|gb|EDS72024.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 134/225 (59%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  LA  +  +L+           G  G+ L +   +D I+LD+ L +I GF
Sbjct: 1   MRVLIIEDEVNLALPLVALLEKNKILADTVADGTSGLMLARKPVYDVIVLDIMLPEIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    +TP+ +L+ + +I+D+V+GL  GADDY++KPF+ +EL+ARI+A+ RR  
Sbjct: 61  TILKTLREEHNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   + ++  G++S+N++  ++ +      LT KE  ++E L   K+  L+K+  L+ ++
Sbjct: 121 GSITEEVLHIGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVW 180

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            G D   +   ++++I  LRKKL + A  K  I T  G GY L+E
Sbjct: 181 -GIDSYAIDNSVEIYIHYLRKKLGSDADVK--IVTNRGLGYTLKE 222


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 132/230 (57%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++++ED+KA++  I+  L+ E + V V   GE+G+E+      D ++LD+ +  + G  
Sbjct: 3   KVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K + P+ +L+  +   DKV GL+ GADDYI+KPF   EL+AR++A +RR   
Sbjct: 63  VCKLVRKTK-NMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTS 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           H +         + IV G+L +NL+   V   G  I LT +E+++++ L+++K    T+E
Sbjct: 122 HEEIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY  R
Sbjct: 182 ILLEKVWGFEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYFR 231


>gi|315639535|ref|ZP_07894677.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484685|gb|EFU75139.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 228

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  +EL LK E +   V   G  G++     E+DAI+LDL L ++ G E
Sbjct: 3   RVLIIEDEKNLARFVELELKHEGYTTDVHYNGRTGLDAALNNEWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I
Sbjct: 63  VCRRIRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ I   DL++  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 ESDKNISKQTTITYRDLTIEKENRIVRRGSEVIELTKREYELLLTLMESVNVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 182 NKVWGYETEVETNVVDVYIRYLRNKI-DVPGEESYIQTVRGTGYVMR 227


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V V + GE G++     EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+LL+EDD A+A  +   L  E + V     G D + +    E  D +ILDLGL D+ G 
Sbjct: 3   RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL ARIRA++RRS+
Sbjct: 63  EVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRSQ 122

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S  V G +++++ A+     G  + L+ KEY ++ +L     + +T++  +  
Sbjct: 123 ATEESGDSYDVNG-VTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMRE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        K +D+ I  LR+KL + A     I TV G G+
Sbjct: 182 VWGAEWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGF 223


>gi|218549147|ref|YP_002382938.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ATCC 35469]
 gi|218356688|emb|CAQ89315.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia fergusonii ATCC 35469]
 gi|324113921|gb|EGC07895.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497568|gb|EGC95427.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii
           ECD227]
          Length = 223

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   F   +E D  I+DLGL D 
Sbjct: 1   MRVLVVEDNPLLRHHLKVQLQDAGHQV---DDAEDAKEADYFLNEHEPDIAIIDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   IS PV +L+     +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDISLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVIARMQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINNEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A      I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDEVITTVRGQGYLF 220


>gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71]
 gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71]
          Length = 230

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG  L     FD ++LD+ L D+ G+
Sbjct: 1   MRLLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A   TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I   DL+++L        G +I+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFEPK-LIHTVRGMGYKL 221


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L  E + V     G  G+EL +   FD I+LD+ L  + G EV
Sbjct: 5   ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + P+ +L+   S+ DKV GL SGA+DYI+KPF  EEL+ARIR  +R +   
Sbjct: 65  LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 123

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + + +++   L ++ D +TV ++G  + LT +E+ ++  L   K   L++E  L +++  
Sbjct: 124 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +DV+I  LR K+      K +I TV G GYV++++
Sbjct: 184 DFAGDTNAVDVYIRFLRGKIDEVFNVK-FIHTVRGVGYVIKDD 225


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ +K+E +   +   G + +   +   +   IILD+ + D+ G
Sbjct: 1   MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+RA++RR+
Sbjct: 61  TEVLKEVRKDN-PVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119

Query: 120 R-GHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + G AQ+   ++  G L++N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNGMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR KL  A GG   ++TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGY 224


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   +++ L+ E + +   + G   +   + ++ DA++LD+ L D+ G 
Sbjct: 43  IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      PV  L+   S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 162

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL+++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 163 LVVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 222

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+K+   AG    I TV G GY+L+
Sbjct: 223 RVWSYDFGGKSSVVEIYISYLRRKID--AGRNPMIHTVRGSGYMLK 266


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 133/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+++++  ++  L+   F V   + GE+G       + D I+LDL L  + G E
Sbjct: 4   KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ          I+ GDL +  D         ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR+K+ +      YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEEPKVDE 238


>gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 219

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M++LL+ED+  L  S++ +L+    N Y+ D   D  E   F +   +D IILD+ L DI
Sbjct: 1   MKVLLVEDNIGLNASLKEILE---LNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF +L+ +R   I TPV +L+    + DKV+GL+ GADDYI+KPF  EEL+ARI+A+ R
Sbjct: 58  DGFTLLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS      ++   DL V+L ++ V+  G  I LT K + ++E L   +   +T EM  + 
Sbjct: 118 RSSVEKSDVVKIDDLEVDLSSRKVKKDGKEIDLTPKLFCILEQLVRNRGKIVTYEMLYSK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + P  + +   I  LRK +      K  I+T+ G GY
Sbjct: 178 CWEITEVPSNETLRANIKLLRKLIDPE---KKIIKTISGVGY 216


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|33598902|ref|NP_886545.1| putative response regulator protein [Bordetella parapertussis
           12822]
 gi|33603981|ref|NP_891541.1| putative response regulator protein [Bordetella bronchiseptica
           RB50]
 gi|33568957|emb|CAE35371.1| putative response regulator protein [Bordetella bronchiseptica
           RB50]
 gi|33575032|emb|CAE39698.1| putative response regulator protein [Bordetella parapertussis]
          Length = 226

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDAIILDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLLAERRLAVEEFDAIILDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ ++V  L  GADD++ KPF  EEL AR+ A++R
Sbjct: 59  DGHTLLTRIRARDDRTPVLVLTARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  GDL+++  ++   V+G  + L+ +E+ ++  L  R    L K+  L+ 
Sbjct: 119 RSRGREHPRLTLGDLALDTASQRFTVKGQPLALSPREHAVLRALIQRSGEPLNKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     +  ++ I+V + +LRKKL++       I T+ G GY L ENA D
Sbjct: 179 IQSSDSDVNLEAIEVLVHRLRKKLADTG---VQIVTMRGMGYCL-ENAVD 224


>gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH]
          Length = 247

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 222


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F+V     G + +   + +  D  +LD+ L D+ GF 
Sbjct: 12  RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     +DKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 MDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+         I+T  G GYVLR   K
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVLRTAEK 238


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED++AL  ++   L++E ++V V   GE+G        FD IILD+ L    GF+V
Sbjct: 5   ILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRNGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R A ++TP+ +L+    + DKV GL+ GADDY++KPF   EL+ARI A++RRS   
Sbjct: 65  CRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPMR 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +   GDL V+L    V  +G  + L+ +E+Q++  L   +  T+++   L  ++
Sbjct: 125 PPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +D+ I  LR+K+        ++ TV G GY
Sbjct: 185 GYSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGY 224


>gi|283784940|ref|YP_003364805.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282948394|emb|CBG87982.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGLSLIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGHASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDALMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDDVITTVRGQGYLF 220


>gi|71908092|ref|YP_285679.1| heavy metal response regulator [Dechloromonas aromatica RCB]
 gi|71847713|gb|AAZ47209.1| Heavy metal response regulator [Dechloromonas aromatica RCB]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F   +   G DG+      E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEAKTGDYLKQGLSEAGFGADLARNGLDGMHEGLAGEYDLLILDVNLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 61  QVLKALRAAGRDLPVLFLTARDQVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  +     G RI LT KE+ ++EL   R+   L +    + ++D
Sbjct: 121 AKETGNLSIADLELDVLKRRAIRAGQRIDLTAKEFALLELFLRRQGEVLARSFIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+      K  I T+ G GYV+
Sbjct: 181 MNFDSDTNVVEVAIRRLRAKVDEEFTPK-LIHTLRGMGYVM 220


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK      
Sbjct: 124 SAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D I+LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225


>gi|15890352|ref|NP_356024.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15158564|gb|AAK88809.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+K +A ++   L  +   +  T    D +EL + + +DAI+LD  L D  G 
Sbjct: 1   MRLLLIEDEKEMADALSATLGKQGIVIDHTMRLGDAMELTRQHLYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR A + TP+ +L+ M+  ED++ GL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  AFIPKLRRAGVDTPIILLTAMNEPEDRIAGLDGGADDYLGKPFLVGELLARVRAVLRRPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + I  G + ++    +V +      L  +E  ++  L+ RK  ++ +      +Y+
Sbjct: 121 GLAPAEIAAGRIVIDPLHLSVTINSLPFDLPRRELLVLVALAKRKGKSVLRSTLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E +   +D  I +LRK+L +A+ G + +  + G GY+L+E+A
Sbjct: 181 YEEEIQSNALDAHISRLRKRLLDASAGVS-VHNIRGIGYLLKEDA 224


>gi|319796301|ref|YP_004157941.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315598764|gb|ADU39830.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 218

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD+ +  S++  L+   ++  +V D GE          +  ++LDLGL    G
Sbjct: 1   MRVLLVEDDEMIGRSLKQALEGAGWSADWVRD-GELAQSALGDGGYTCVLLDLGLPKQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR  R    +TPV +L+    ++D++  L  GADDY+ KPF   EL+AR+RAIVRR 
Sbjct: 60  TDVLRRARERGDATPVLVLTARDGLDDRINSLDLGADDYLLKPFEFRELLARMRAIVRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A SL+ +G L ++L  + V V G R  LT +E+ ++  L  R    L++E   N +Y
Sbjct: 120 DGAAHSLVGSGVLQLDLTTREVLVNGAREALTAREFALLHALLERPGAILSREQLENRIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +E     IDV I  +R+KL     G   I  V G G+
Sbjct: 180 GWGEEVTSNAIDVLIHGMRRKL-----GAESIRNVRGLGW 214


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 10  RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  LR      PV  L+   ++ D+V GL++GADDY++KPF+ +E+ AR++A++RRS G
Sbjct: 70  TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRS-G 128

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            AQ    +++   DL++N+++  V   G  I LT  E++++  L       L+K+  L+ 
Sbjct: 129 RAQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDA 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++++I  LRKK+   +G    I TV G GY++RE
Sbjct: 189 VWSYDFGGQVNVVELYISYLRKKID--SGRPALIRTVRGAGYIMRE 232


>gi|167755208|ref|ZP_02427335.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402]
 gi|237734957|ref|ZP_04565438.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167705258|gb|EDS19837.1| hypothetical protein CLORAM_00713 [Clostridium ramosum DSM 1402]
 gi|229381733|gb|EEO31824.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK + + +++ LK++N+N  + + G  G+ L      D ++LDLGL DI G EV
Sbjct: 6   ILIVEDDKTIQNFLKVTLKTQNYNYIIAETGLSGLSLFYANRPDLVLLDLGLPDIEGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    S P+ ++S  SS  +KV  L  G+DDY++KPFN  EL+ARIRA +R     
Sbjct: 66  LKQIR-QNSSIPIIVVSARSSETEKVMALDYGSDDYVTKPFNAAELLARIRAALRHCLKE 124

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +     L V+ + + V V+   IHLT  EY+M+ LL   +   LT      +++ 
Sbjct: 125 KVSEPIFELDYLKVDFERRHVWVKDQEIHLTPIEYKMLVLLITNRGKVLTHHFIQENVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + + + VF+  +R+K+   +   ++I T  G GY
Sbjct: 185 YETTDDYQSLRVFMANIRRKIEIDSSSPHFIITEVGVGY 223


>gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   T    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+    G +N  I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRGKIDR--GFENPMIHTVRGAGYVIRAD 227


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 220


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+++++  ++  L+   F V   + GE+G       + D I+LDL L  + G E
Sbjct: 4   KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ          I+ GDL +  D         ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEEPKVDE 238


>gi|222082681|ref|YP_002542046.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727360|gb|ACM30449.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++ ED+  +   +   L+ +++ V     GE+         FD +ILDLGL  + G  VL
Sbjct: 1   MIAEDEPTIVSDMRRCLEDQHYIVSTVTDGEEAWYRGDVEHFDLVILDLGLPKLDGLTVL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R  R  +   PV IL+      DKV G+ +GADDY++KPF  EEL+AR+RA++RR+ G +
Sbjct: 61  RRWRAGRRGMPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQS 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             ++  G L ++   +TV  +G  + +T  EY+++  L     T L++    + +YD   
Sbjct: 121 SPILSNGVLELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIYDEET 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++V + +LR+K          IET  G+GY++
Sbjct: 181 ELLSNALEVVVARLRRKFDGTV-----IETRRGQGYLI 213


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G L+++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 126 LARDSRLDAGTLDVAG-LAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|163943307|ref|YP_001642537.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865504|gb|ABY46562.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++E+   + + I L++    FN    D GE  +EL   +  D I++D+ L  I GF+V
Sbjct: 4   ILVVEEGITIRNFIVLIMNRAGFNALAADTGETALELLGKHNVDIILIDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    +  + +LS      DKV+GL  GADDYI KPF+  EL AR++A++RR +G+
Sbjct: 64  CKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRRVKGN 123

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +++  I +    +NL  + +  +G  I LT  EY ++  L   +   ++++  LN ++ 
Sbjct: 124 KENMESIHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELLNEIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + K+I V I +LR+K+     G  ++ TVWG+GYV R
Sbjct: 184 VNYVVKTKVIGVNIRRLRQKIEPNPSGPQFLRTVWGKGYVWR 225


>gi|300693468|ref|YP_003749441.1| DNA-binding response regulator in two-component regulatory system
           with bass (basr) [Ralstonia solanacearum PSI07]
 gi|299075505|emb|CBJ34798.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum PSI07]
          Length = 221

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L  ++   L+   +N        D  +      FDAI+LDLGL D  G   
Sbjct: 4   ILLIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMGSNTFDAIVLDLGLPDGEGHVF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A+   PV I S   ++ ++++GL  GADD++ KPF  +EL+AR+RA++RR  G 
Sbjct: 64  LEELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQ 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + +    G L V    K V   G+ + LT +EYQ++  L  R +  +T+E  ++ LY   
Sbjct: 124 STNRWSVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREG 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++V I  LR KL     G+  I+T+ G GY++  N
Sbjct: 184 NRVSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 220


>gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  +I   LK   + V     G D +E+ +   +D IILDL L  + G 
Sbjct: 1   MKILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIEIESYDLIILDLNLPHMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS  S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ 
Sbjct: 61  EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I    +  +   + V V G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223
              +     I V I  LRKKL N     NY  IE   G GY+LR+
Sbjct: 181 SSVDLLSNSIRVHISALRKKLKNKL---NYDPIENRIGVGYLLRK 222


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKAK-IITTVRGVGYVIKD 225


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220


>gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
 gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 120/202 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA  +  +LK   ++V V   GE+ +   +   +DA++LD+ +  + G 
Sbjct: 1   MRILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENYDAVVLDIMMPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R    S PV +L+  S +EDKV GL  GADDY++KPF  +EL+AR+RAI RR  
Sbjct: 61  TVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRRKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G++++N     +  +     LT KE+QM+E+L    +  ++ + F++ ++ 
Sbjct: 121 TVTDNVLTFGNITLNRTNFELSSEKGSYKLTNKEFQMLEMLMSTPSNIISADTFMDKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
              + ++ ++ V+I  LRKKL+
Sbjct: 181 YDTDSDISVVWVYISYLRKKLA 202


>gi|187926854|ref|YP_001893199.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665183|ref|YP_002983542.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728608|gb|ACD29772.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867210|gb|ACS64870.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 221

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  L  ++   L+   +N        D  +      F+AI+LDLGL D  G   
Sbjct: 4   ILLIEDDLPLGTALARALRQAGYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A    PV I S   ++ ++++GL +GADD++ KPF  +EL+AR+RA++RR  G 
Sbjct: 64  LEELRAAHRDVPVIIASARDALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQ 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + +    G+L V    K V   G  I LT +EYQ++  L  R +  + +E  ++ LY   
Sbjct: 124 STNQWSVGNLVVEPSQKRVTQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREG 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D      ++V I  LR+KL N       I+T+ G GY++  N
Sbjct: 184 DSVSANALEVVIHHLRRKLGN-----ETIQTIRGVGYMIGGN 220


>gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+++ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIADGVRKALRADGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L +R    L+K      +Y 
Sbjct: 121 GRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|293570434|ref|ZP_06681489.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980]
 gi|291609380|gb|EFF38647.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++EDDK L+++I+ +L +      V + GE   EL     +D  ILDL + ++ G+
Sbjct: 2   IKLLVVEDDKVLSNNIKEILTTIGEITQVYNGGEGLFELESGV-YDLAILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI TPV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS 
Sbjct: 61  EVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + ++
Sbjct: 121 GLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + +++V++  LRK L +    K  I+T+   GY+L+
Sbjct: 181 GFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 220

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD+ +A  +   L+++ F V   D  +DG         +A  L L    +P  
Sbjct: 1   MRILLVEDDRMIAEGVRKALRADGFAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   +S PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGIDVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G ++SLI  G L+++  +  V + G  + L+ +E+ +++ L  R    L+K      
Sbjct: 118 RQAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y   +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G    E+ +  + D ++LDL L  + G E
Sbjct: 38  RILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMDGIE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R A+   P+ +L+  S   D VRGL+SGADDY++KPF   ELVAR+RA +R    
Sbjct: 98  ICRLIR-AESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +V G++++++   ++   G +I LT  E+ ++  L+ +     ++E+ L  ++  
Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWGY 216

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++  + +LR K+         + TV G GY
Sbjct: 217 RHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGY 254


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L  DG+E          DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    A+S+ +   DL+++   + V     RI LT  E+ ++E+L       LT+   
Sbjct: 120 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 230


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ +   +   L  E + V     G +G+      E D ++LD+ +  + GFEV
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 65  CRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQ 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +  + +   DL ++ +++ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 125 QDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K +   GGK  I T+ G GY+LR
Sbjct: 185 GYDYSGESNVLEVYIAMLRQK-TEQDGGKRLIRTIRGAGYILR 226


>gi|187927029|ref|YP_001893374.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|187728783|gb|ACD29947.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 244

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49
           MR+LL+EDD  +  S+   L+ + F + +V D GE  +                 FD ++
Sbjct: 1   MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRD-GEAALHAVTAPGAGGAEAGGTLFDLML 59

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LDLGL    G EV+R LR   I  P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL 
Sbjct: 60  LDLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 119

Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R     
Sbjct: 120 ARMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVW 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +     ++LY   +E     ++V+I  LRKKL     G + I+ + G GYV+        
Sbjct: 180 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVIPRETSASP 234

Query: 230 CE 231
            E
Sbjct: 235 AE 236


>gi|119960910|ref|YP_948727.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
 gi|119947769|gb|ABM06680.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A ++++ L++  +       G D ++       + ++LDLGL D+ G E+
Sbjct: 4   VLIVEDEARIARAMQVTLQANGYQALTVGTGADALQATAKQPVEIVVLDLGLPDMDGVEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +R +R    S P+ +LS   + EDKV  L +GADDY++KPF  +EL+AR+R   RR    
Sbjct: 64  IRRIR-GWSSMPIIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRVASRRVVTE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H +  + T D  V+L  K +   G  + LT  E+ ++ELL   K   ++++  L  ++  
Sbjct: 123 HEEPTLATTDFMVDLAGKKIVKDGSEVRLTPTEWNILELLVRNKGKLVSQQQILTQVWGQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + + V+I +LR+KL        ++ T  G GY
Sbjct: 183 AYAKETQYLRVYIAQLRRKLERDPAEPRHLHTEAGMGY 220


>gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
 gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
          Length = 221

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   I   L+ E   V +VTD G          EFD ++LD+GL    G
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR LR     TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+
Sbjct: 60  LDILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +V G L ++     V + G  + L  +EY ++ LL       L++      LY
Sbjct: 120 TGRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAS 221


>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
 gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
          Length = 219

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL   I   LK E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR A    PV +L+   +  +++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +    + ++  ++ V  QG  I L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ++V +  LR+K          I TV G GY++
Sbjct: 181 WSEEVESNALEVHVHHLRRKFF-----PELIRTVRGVGYMV 216


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+A+R++    PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R+++RR +
Sbjct: 61  ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+      K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDEPFEPK-LIRTVRGMGYVL 220


>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 273

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 250

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E +NV V D G+ G +L     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  SICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRSP 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  GDL +  D +    Q   I+L+ KE +++          LT E     
Sbjct: 121 ALENVATNPLKIGDLELEPDNQVAYRQSRIINLSDKEVKLLTYFMEHPQQLLTHEQIYQF 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L++  ++P   ++   I  LR+K+         I TV+G+GY
Sbjct: 181 LWEDSEKPSSNVLAALIRLLRRKIEEEGP---LIHTVYGKGY 219


>gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 132/232 (56%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL+IEDD+    + + ++K+     +V D   DG+         ++D +I+D  L  +
Sbjct: 4   MRILIIEDDR---EASDYLVKAFREQGHVADHAADGLSGYASASEGDYDVLIVDRMLPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++ +LR  K+ TP  ILS +  ++D+V+GL++G DDY+ KP++  EL+AR+ A+ R
Sbjct: 61  DGLSLISSLREQKVETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALAR 120

Query: 118 RSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  G    ++    GDL ++  +  V V G  I L  +E++++E L       +T+ M L
Sbjct: 121 RRVGPRGEETHYRVGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLRENAK 226
            +++D   +P+  +IDV I +LR K+    G +N  + T+ G GY++RE  +
Sbjct: 181 ENVWDYHFDPQTNVIDVHISRLRAKIDK--GRENPLLHTIRGAGYMIREGTR 230


>gi|229158690|ref|ZP_04286748.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228624674|gb|EEK81443.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L      +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTEAGHFILQLHNENEGLNIIYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K+ TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVKM-TPIIIVTDNISSEDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCN 119

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q+ I      DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNEITFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GHNVVVNPNVVDLYIGYVRKKLKCEKKNR-YIQTIHGRGYSMVE 222


>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 240

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  +   ++  L +E ++V +   G D +   +   + A  +D+ L  + GF
Sbjct: 1   MKLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R +  + P+ +L+   +IED+V GL SGADDY++KPF   EL AR+RA++RR  
Sbjct: 61  ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I+ G L+++       V GH + L+ +E+ ++ L +   + TL++   L  ++ 
Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     +ID ++  LRKKL  A  G + + T  GRGY L
Sbjct: 181 TTENIGTNVIDQYVSYLRKKLDVAGAGLSIV-TERGRGYRL 220


>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
 gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 14/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G++      FD +ILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE----M 173
           +     + +I  GDL+++    TVE     + LT KE+++++L    +N   TK     +
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N  Y G D     +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDD----NVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  LA  +   L+ E + +     G   +   +    DA++LD+ L D  GF
Sbjct: 19  LRVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGF 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRAL   K    V  L+   ++ED+++G+ +G DDY++KPF+ EE+VAR+R ++RR+ 
Sbjct: 79  AVLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRA- 137

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A+ L     +  GDL ++ DA+ V   G  I L+  E++++  L       L+K   L
Sbjct: 138 GLARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQIL 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         +++++I  LRKK+   AG +  I TV G GYV++
Sbjct: 198 DRVWSYDFGGRAHVVELYISYLRKKVD--AGREPLIHTVRGAGYVIK 242


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TV   G  + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   + L L+   F V   + G + +E  +    D ++LD+ L  I G+
Sbjct: 1   MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V R LR  +   PV +L+    + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ 
Sbjct: 61  AVCRILR-RESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     ++ G L +++ A+     G R++LT KE+ ++ LL+      L +   +  
Sbjct: 120 KVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + +V+ +D  +  LR KL  A   ++ IETV   GY L
Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRL 223


>gi|307308836|ref|ZP_07588524.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|306900641|gb|EFN31253.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++AL   +  +L+   + V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNRALTEGLSTLLRGSGYAVDVVSDGASAHAVAAAESFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNRAAVLILTARGTPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G++S++L +++    G  I +  +E  ++ELL +R    + K+  +  L  
Sbjct: 121 GLRASVVSYGNVSLDLTSRSFSSAGMPIEIPARELGLLELLFMRAGKVVAKDAIVQSLTG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D+     I+ ++ +LRK+L+        + T  G GY L + A  E
Sbjct: 181 LDDDLSPNAIEQYVSRLRKRLAPFG---LTVRTARGIGYYLDKTAGPE 225


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+ EDDK +A+SI L L++E F+V     G + IE+ K    D II+DL +  + G 
Sbjct: 4   FKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ LR      P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR  
Sbjct: 64  EAIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYH 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    +  +I  G++ +N   KT  V    I+LT  EY+++E L    N   + E    
Sbjct: 123 SYDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYE 182

Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++   +EP  E K + V I ++R+K+        YI+  WG GY   +N +
Sbjct: 183 HVW---NEPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  +        D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + +        I   DL +  +      QG ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEEPKGDE 238


>gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 236

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 25  SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 84

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR RG + +     I  G
Sbjct: 85  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 143

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++
Sbjct: 144 PLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 203

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DVFI  LR+KL  A G    + TV G G+VLR
Sbjct: 204 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 234


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V     G DG  L     FD I++D+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L +LR A  +TPV  L+   S+ D+V+GL+SGADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G+  S+   GDL++++  ++    G  I LT KE+ ++EL   R+   L + +  +
Sbjct: 121 VPLSGNQLSV---GDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +IDV + +LR K+ +    K  I+TV G GY L
Sbjct: 178 QVWDMNFDSDTNVIDVAVRRLRMKVDDGHDIK-LIQTVRGMGYRL 221


>gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 219

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V      +  +   K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G LS++L+ + V  +   + L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKKL+N     + I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----DLIKTVRGIGYTLTE 217


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++A+A   +  L+   F V + + G+ G+E     E+D IILDL L ++ GF+
Sbjct: 3   KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K + P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ V  D      + ++  A+ + V G     T KE+ ++  L+   N   TK    
Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGY 225


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+A  + ++L+ + + V  +  G   +E       D ++LDL L  + G E
Sbjct: 9   RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   P+ +L+  +   D V GL++GADDY++KPF  EELVARI+A VRRS  
Sbjct: 69  VCRRLR-RESGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++D   V      I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+ +     + + TV G GY
Sbjct: 188 RHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGY 225


>gi|261367174|ref|ZP_05980057.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282570768|gb|EFB76303.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 222

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 11/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  IEL L    +     + GE   +    ++++  ILD+ L  + G+E+
Sbjct: 4   ILIVEDERPIADLIELTLTGAGYTCEQVNDGETAADRIADHDYELAILDIMLPKVDGYEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   + TPV  ++  +S++D+VRGL  GADDY++KPF   ELVAR+ +++RR+   
Sbjct: 64  LGYLR--SVGTPVIFVTAKTSLKDRVRGLHEGADDYLTKPFEPLELVARVESVLRRT--- 118

Query: 123 AQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +++ ++     V+LD   +TV   G  +HL+ +E++++ELL   +  TL +E+    L+ 
Sbjct: 119 SRANVILHAFGVDLDPAGRTVLQNGRPVHLSPREFELLELLMRNRGMTLYREVLYERLWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  + + +D+ I +LRKKL    G K+ I TV+  GY L
Sbjct: 179 DDDTFDTRPLDLCITRLRKKL----GWKSEICTVFRVGYRL 215


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A      L+   + V +   G  G++      +D +I+DL L  + GFE+
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R  K+  P+ +LS  S   DK+RGL  GADDY++KPF+  EL+ARIR+ ++R    
Sbjct: 64  IKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYERL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  +  +I    L +N  +  V V G  +  T KEY+++   +   N   +KE   + 
Sbjct: 123 TGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERIFDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+      ++  + V I K+RKK+        YIETVWG GY
Sbjct: 183 LWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGY 224


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E ++  + + GE  +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK   P+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  + D        L VNL   +V   G +I +  KE +++  L+   N   T+E 
Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L++++      + + +DV + +LR+K+ +    +  I TVWG GY
Sbjct: 185 LLDNIWGYEYVGDTRTVDVHVKRLREKIKDKPTWR--IATVWGIGY 228


>gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 225

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  ++  I   L+   FNV +    E+  E+   + FD II+D+ L  I G 
Sbjct: 1   MQILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  K  TP+ +LS ++  EDK+  L SGADD++ KPF+ +EL++RI A+ RR++
Sbjct: 61  QLTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTK 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q +    +V  +L ++ D   V   G +I L+ KE++++  L+   +  +++ M LN
Sbjct: 121 YQKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    +    ++DV+I  LR K+  +     +I TV G GY+ +
Sbjct: 181 AVWGINFDNNTNVVDVYISYLRNKIDESK--HQFILTVKGTGYMFQ 224


>gi|77459741|ref|YP_349248.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383744|gb|ABA75257.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S   +V   D G +G++      +D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLDRAVSGNYDLITLDRMLPELDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  LR   ++TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR  S
Sbjct: 63  IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQNS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL ++L +         + L   EY+++E L       L++ M    ++
Sbjct: 123 NGAQPTTLQVADLQLDLISHEARRAEQVLTLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGNVPLIRTVRGSGYVIAE 225


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE   +       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + +        I+  +L +  +      +G ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEEPKGDE 238


>gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 232

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ AL   +   L  E F+V V   GE G++L +  +   IILD+GL  I G EV
Sbjct: 9   VLVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPRIDGLEV 68

Query: 63  LRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R+LR  + S   V +L+      DK+ GL  GADDY+ KPF+  E+VAR+RA++RR R 
Sbjct: 69  CRSLR--RFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRR 126

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +    GDL+++L  + V +    I LT  E+ ++ +L+   N   ++   +  +
Sbjct: 127 MPDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + +++DV + ++R+KL + AG   Y+ TV G GY
Sbjct: 187 WGAGWVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGY 227


>gi|195978046|ref|YP_002123290.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225868625|ref|YP_002744573.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225870423|ref|YP_002746370.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195974751|gb|ACG62277.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|225699827|emb|CAW93666.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701901|emb|CAW99401.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 224

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 129/224 (57%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L        V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR   I  PV I++   SI+DK  G + GADDY++KPF  EEL  RI+A+++R  
Sbjct: 61  QVLKALREKDIKIPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+L+V+   K V+V G  I L GKE  ++  +   +N  L K    + ++ 
Sbjct: 121 KFNDKSLKFGNLTVDTTRKEVQVNGQAIELLGKELDLLIYILQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V++ K+RKKL       N+++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK-GTDFVNHLQTLRSVGYILKAN 223


>gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT]
 gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT]
          Length = 227

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+++L + +++ L  EN+ V   + G+  IEL +    D ++LDL L DI GF
Sbjct: 1   MKILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     S+I  G + +  D + V +    +  T  E++M+ L+        T+E 
Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++        + +D+ I ++RKKL      ++ I+T++G GY
Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKL---LEHEDAIKTIYGVGY 223


>gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 233

 Score =  129 bits (323), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/212 (35%), Positives = 118/212 (55%), Gaps = 6/212 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      P
Sbjct: 22  SLERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTG 130
           VC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR RG + +     I  G
Sbjct: 82  VCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR-RGSSATFSSETIQVG 140

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++
Sbjct: 141 PLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVV 200

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DVFI  LR+KL  A G    + TV G G+VLR
Sbjct: 201 DVFIGYLRRKL-EAGGAPRLLHTVRGVGFVLR 231


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+ G
Sbjct: 64  VCQHIREFS-DMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAG 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL ++ +++ + +    ++LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      +V+ +DV + +LR+K+        Y+ T WG GY   +N
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGYYYYQN 230


>gi|254248194|ref|ZP_04941514.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124874695|gb|EAY64685.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 224

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  +A  I   L +    + V   G DG+       +D + LD  L D+ G  +
Sbjct: 4   ILTIEDDPLIADHIAHTLHAAGHQIDVARTGRDGMARAMSANYDVVTLDRMLPDLDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121
           L  +R   + TPV ++S MS ++ ++ GL++G DDY+ KPF+ EE+ ARI  ++ RR RG
Sbjct: 64  LATMRGVGLDTPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRRRPRG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  G+L+++L  +   +    + L   E +++E +       LT+ M    ++ 
Sbjct: 124 TRVETVLRAGELALDLVRRRATLGARELALLPTESRVLEFMMRNAGRVLTRTMIFEAVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +P   +IDV I +LRKK+ N  G    I T+ G GY+L
Sbjct: 184 CRFDPGTNLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223


>gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 227

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  ++ L L+ E F V     GE  + L     FD ++LDL L  + G  V
Sbjct: 5   VLMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++   PV +++  +  ED + GL++GADDY++KP     L ARIRA++RRS G 
Sbjct: 65  CRVLR-SRGDLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           AQ+  +  GDL V  D +T    G ++HLT  E++++  L   +   +T+E  LN ++  
Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + +++DV I +LR+K+         + TV G GY
Sbjct: 184 DYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGY 221


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 129/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+++D+K +   ++  L+ E + V     G++ ++  K  E+D ++LDL L  + G+
Sbjct: 1   MKALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR++
Sbjct: 61  EVCQQIREFS-DMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNK 119

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A +      +I +G L ++++AK + ++   I LT KE+ +++LL+        +E  
Sbjct: 120 RKAPAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++  +   + + +DV + +LR+K+        YI T WG GY  +
Sbjct: 180 LTLIWGSKYPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYFQ 227


>gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 13/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+ AL   +   L  +   + V D G+ G+ +    ++D +ILD  L  + G E+
Sbjct: 4   ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+   STPV  L+   +++D+V GL +G DDY+ KPF   EL+AR+RA++RR + H
Sbjct: 64  CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRR-QSH 122

Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            ++           L+   ++S+++  +    QG RI L+ KE  ++ L        L+ 
Sbjct: 123 GETITETLGAVKNNLLSVNNVSLDVANQVAYCQGQRIALSEKEVALLTLFLQAPGQILSH 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E   +HL+ G   P   ++   +  LR+K+      +  I +V+G+GY    N
Sbjct: 183 EEIYSHLWPGESPPSSNVLAALVRLLRRKIEQPNAPR-LINSVYGKGYCFEAN 234


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED+ ++A  ++  L+ EN+ V++++ GE+G++  K  E D I+LD  L D+ G E
Sbjct: 4   KIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R+L+  K     P+ +L+     EDKV GL +GADDY+ KPF+  ELVARI A++RR 
Sbjct: 64  ICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  A +  +   DL V+   K V     +I L   EY++I           ++E  L ++
Sbjct: 124 KPQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E++ +DV I +LRK + N  G K+ I TV   GY L
Sbjct: 184 WLNSINVELRTVDVHIRRLRKAI-NLPGKKDLIRTVRSTGYSL 225


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V + + GE G++     +FD +ILDL L  I GFE
Sbjct: 3   RILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKVREVK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V + G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|257898553|ref|ZP_05678206.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257836465|gb|EEV61539.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 224

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++EDDK L+++I+ +L +      V + GE   EL     +D  ILDL + ++ G+
Sbjct: 2   FKLLVVEDDKVLSNNIKEILTTIGEITQVYNGGEGLFELESGV-YDLAILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI TPV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS 
Sbjct: 61  EVLAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + ++
Sbjct: 121 GLFDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + +++V++  LRK L +    K  I+T+   GY+L+
Sbjct: 181 GFDSDTTITVVEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D++ +   ++  L  E F   +   G   + L +   +D I+LD+ L  + G E
Sbjct: 11  RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 71  VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   H +       L +  +   V      + LT KEY+++  L    N TLT+E 
Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      E +++DV I KLR+K+ +      YI+T+ G GY  +E   D T 
Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 247


>gi|187735330|ref|YP_001877442.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425382|gb|ACD04661.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 232

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 120/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ +   + L L    ++V   + G+ G+        DAIILDLGL DI G EV
Sbjct: 8   ILIIDDERQIRRLLNLTLTGAGYHVRECENGQLGLSETALKRPDAIILDLGLPDINGLEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      P+ IL+     ++KV  L +GADDY++KPF+  EL+AR+R ++RR+R  
Sbjct: 68  LKQLR-EWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNRPD 126

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + S+   G + V+L ++ VE     IHLT KEY ++ LL L +   +T    L  ++  
Sbjct: 127 REPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIWGP 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + E +   + V I  LR+KL ++      I    G GY
Sbjct: 187 QHEEDTHYLRVHIAHLRQKLGDSDPENRIIRAESGLGY 224


>gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 223

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V     GE+G+   +   +D +ILD+ L    G 
Sbjct: 1   MRILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR A    PV +L+   + +D V GL +G+DDY++KPF   EL AR+RA+ RR  
Sbjct: 61  SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V  DL ++  ++ V      I LT KEY ++E L     T +T+ M    +++
Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  +RKK+      +  I TV G+GY L+
Sbjct: 181 HSFESFTNIIDVYVNYVRKKVDKGF-DRKLIHTVRGQGYTLK 221


>gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 225

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    ++  IILD  L  + G 
Sbjct: 1   MKVLVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPMLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   ELVAR + +V+R++
Sbjct: 61  KVLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQ 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   S  +  DL +++ +  V      ++L  KE+ +++ L     + +++      +
Sbjct: 121 ASATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223


>gi|309800520|ref|ZP_07694672.1| NsuR [Streptococcus infantis SK1302]
 gi|308115868|gb|EFO53392.1| NsuR [Streptococcus infantis SK1302]
          Length = 223

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 135/225 (60%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL I+DD+ +   I   L++ NFNV      E+ I++C F  FD I+LD+ +  I G E
Sbjct: 4   KILAIDDDEKILRLIRNTLEANNFNVETRSNIEE-IDICDFTGFDLILLDI-MMPISGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R++R ++I+TP+  L+     ED ++G+Q+GADDYI+KPF+ +EL+ARI+  +RR  R
Sbjct: 62  ICRSIR-SQITTPILFLTAKDIEEDLLKGIQAGADDYITKPFSIKELIARIQMHLRREER 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  S   +  D++   D++ V  Q   I LT +E+ ++ LL+  +N   + E   ++LY
Sbjct: 121 SHPASKEELISDITFYQDSQEVYYQSKSISLTKREFDLLYLLAKNENRIFSAEELYDYLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +++ I  +I ++R+K    A   + I+TVWG GY  ++N
Sbjct: 181 PVSSDVQLRSITEYIYQIRQKFK--AHQIDPIKTVWGGGYKWQKN 223


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/233 (36%), Positives = 131/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL ++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 26  VRILAVDDDRAVRESLR---RSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRL 82

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+ARIRA++R
Sbjct: 83  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLR 142

Query: 118 RSRGHAQSLIVTGDLS-VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    +  V    S + LD  T EV +G R I LT  E+ ++E+L       LT+   
Sbjct: 143 RTKPDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRI 202

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 203 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGESRLIHTVRGVGYVLRETPP 253


>gi|69244158|ref|ZP_00602694.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257880948|ref|ZP_05660601.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257884605|ref|ZP_05664258.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257892530|ref|ZP_05672183.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616213|ref|ZP_05713983.1| putative response regulator CiaR [Enterococcus faecium DO]
 gi|293560618|ref|ZP_06677106.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1162]
 gi|293569893|ref|ZP_06680980.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1071]
 gi|294614504|ref|ZP_06694417.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1636]
 gi|294617772|ref|ZP_06697386.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1679]
 gi|294621682|ref|ZP_06700846.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           U0317]
 gi|314939067|ref|ZP_07846330.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943555|ref|ZP_07850318.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948812|ref|ZP_07852183.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952199|ref|ZP_07855216.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993264|ref|ZP_07858639.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314994826|ref|ZP_07859957.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68196615|gb|EAN11041.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257816606|gb|EEV43934.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257820443|gb|EEV47591.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257828909|gb|EEV55516.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|291587641|gb|EFF19518.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1071]
 gi|291592622|gb|EFF24218.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1636]
 gi|291595946|gb|EFF27225.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1679]
 gi|291598691|gb|EFF29744.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           U0317]
 gi|291605441|gb|EFF34887.1| transcriptional regulatory protein CiaR [Enterococcus faecium
           E1162]
 gi|313590937|gb|EFR69782.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592245|gb|EFR71090.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595664|gb|EFR74509.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597753|gb|EFR76598.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641619|gb|EFS06199.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644755|gb|EFS09335.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 224

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 135/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++EDDK L+++I+ +L +      V D G +G+   +   +D  ILDL + ++ G+
Sbjct: 2   IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  KI TPV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS 
Sbjct: 61  EVLAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + ++
Sbjct: 121 GLFDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + +I+V++  LRK L +    K  I+T+   GY+L+
Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|83953229|ref|ZP_00961951.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. NAS-14.1]
 gi|83842197|gb|EAP81365.1| two component transcriptional regulator, winged helix family
           protein [Sulfitobacter sp. NAS-14.1]
          Length = 218

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+KALA  ++  L+++   V +   L E    L +   +D ++LDL L D  G
Sbjct: 1   MRILLIEDEKALARPLKEHLEADRHIVEWFCTLDEADAAL-RTLSYDVVLLDLQLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L  LR   I TP+ IL+    + D++ GL  GADDY+ KPF+ +E+ ARI  + RRS
Sbjct: 60  LNFLSKLRAKAIRTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ VNL   TV      + LT KE+ + E L  RK   + KE     +Y
Sbjct: 120 ANQFAQTVQLHDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  +E E   I+  I +LR KL     GK+ I T  G GY L
Sbjct: 180 DYGEEVESNAIEAHISRLRTKL-----GKDLIATHRGLGYAL 216


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            AQ +         I  GDL+++  A  V   G  I LT +E++++  L+   +  +T+E
Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E F V+    G + +E  K  E D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVRKS-YDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A     Q  +  GDL++  DA  V+ +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +V+ +DV + +LR+K+ +     N+I T  G GY L
Sbjct: 183 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A++++  L+   F V V   G  G  L     +D +ILDL L    G+E
Sbjct: 41  RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + P+ +L+ +  ++DK++  + GADDY+ KPF+  EL+ARIR  ++R+  
Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + + Q  IV GDL ++ + K V   G +I LT KEYQ++E L+L K   ++K +    
Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +    +I+V++  LRKK+      K  + T  G GY L E
Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNK-LLHTKTGMGYYLAE 265


>gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 231

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LAH +E  L    F V     G    +L +   +  ++LD+ L  + GF
Sbjct: 8   MRLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETYTLMVLDVSLPKMDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    + PV +L+  + + D+VRGL  GADDY++KPF+  EL AR+RA++RRS+
Sbjct: 68  SVLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALLRRSQ 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQS+   GDLS + D     + G  + LT +E  ++  L  R+   + ++     ++ 
Sbjct: 128 GLAQSVQHFGDLSWH-DEGYFLLWGKPLALTPREQAVLHTLMQRRGRPVLRQYLYEQVFT 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226
             D+  +  +D+++ ++RKKL   AG    I T+ G GY L  E+AK
Sbjct: 187 FLDDVSIDSLDLYVHRVRKKL---AGSNVAIVTLRGLGYSLECEHAK 230


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++   + V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|50121372|ref|YP_050539.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           atrosepticum SCRI1043]
 gi|49611898|emb|CAG75347.1| two-component response regulator of virulence determinants
           [Pectobacterium atrosepticum SCRI1043]
          Length = 229

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + +      V   D   D  E   F      D  I+DLGL D 
Sbjct: 1   MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMSMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + +    I LT  EY +IE L   K   ++KE  +  
Sbjct: 118 RNSGLASQIISLPPFEIDLSRRELMIHSAPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+   A  ++ I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-ADAQDVITTVRGQGY 218


>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
          Length = 231

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ +   +   L  E + V     G +G+      E D ++LD+ +  + GFEV
Sbjct: 5   ILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 65  CRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQ 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +  + +   DL ++ +++ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 125 QDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K +   GGK  I T+ G GY+LR
Sbjct: 185 GYDYSGESNVLEVYIAMLRQK-TEQDGGKRLIRTIRGAGYILR 226


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  IE  LK + F V +   GE  +E  K   FD IILD+ +  I GF 
Sbjct: 4   KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR  +   P+ +L+      DK+ GL+ GADDY+ KPF+  EL AR++AI+RR   
Sbjct: 64  VLRELRKTR-HIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +I  GDL ++L    ++ +G  I LT +EY++++ L+       ++E  L
Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++D     +++ +DV + +LR+K+ +      YI T  G GY
Sbjct: 183 DQVWDYEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGY 226


>gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685]
 gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685]
          Length = 220

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+         +   L +  ++  IILDLGL D+ G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGLPDMDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I+TPV IL+   ++ ++V GL +GADDY+ KPF   EL+AR RA++RR +
Sbjct: 61  SALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   ++ ++L    V      + +T KE+ ++  L  R   T+++E+    LY 
Sbjct: 121 GLCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +DE     ++V I  LR+KL     G+  I+T+ G GY L
Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GRERIKTLRGVGYRL 216


>gi|172065501|ref|YP_001816213.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997743|gb|ACB68660.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   I   L+ + F V +V D G+      + +   A +LDLGL  + G
Sbjct: 1   MRILLVEDDVLLGDGIRAGLRQQGFQVDWVRD-GDAAQRELRAHVHAATVLDLGLPLVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+ +R    ++P+ +L+   ++ D++R L +GADDY+ KP +  EL AR+RA+VRRS
Sbjct: 60  MDVLKRIRRDGTASPILVLTARDAVPDRIRALDAGADDYVIKPVDLYELGARLRALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +   D+ +   ++T    G  + L+ +E+ ++ +L L     L++E    +LY
Sbjct: 120 HGRPMERLHAQDVELEPASRTTRRAGVAVALSTREFDLLHILMLNAGRVLSREQIEQYLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
               E E   ++V I +LR KL     G   I TV G GYVL R++A
Sbjct: 180 SWGQEVESNAVEVHIHRLRAKL-----GSELIRTVRGVGYVLMRDDA 221


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 128/228 (56%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     +I  GDL ++ +++ + + G  ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      +V+ +DV + +LR+K+ +      Y+ T WG GY   +N
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGYYYSQN 230


>gi|239625414|ref|ZP_04668445.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519644|gb|EEQ59510.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 232

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDKA+ + I   L+   ++    D GE GI        D ++LDLGL D+ G +V
Sbjct: 6   ILIIEDDKAIKNLIATTLEMHEYHYIWADKGEQGILTAASQRPDIVLLDLGLPDMDGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R +  + P+ ++S  S  +DK+  L +GADDY++KPF+ +EL+AR+R+  RR    
Sbjct: 66  IRKIR-SWSNMPIIVISARSGDDDKIAALDAGADDYLTKPFSVDELLARLRSTQRRLNYM 124

Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            S    QS + T G L+++  A    + G  +HLT  EY+++ LL+      LT      
Sbjct: 125 QSLEDVQSSVFTNGGLTIDYAAGYASLDGEELHLTPYEYKLLCLLAHNVGKVLTHSYITR 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 EIWGAAWEGDVASLRVFMASLRKKIEKEPSQPQYIQTHVGVGY 227


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 23  VRILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+     G   +ET+ G GY LR++ 
Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246


>gi|270265048|ref|ZP_06193311.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270040982|gb|EFA14083.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + L L +E +             L    ++  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQQGLALALANEGYACDCAATAAQANALLITSQYSMIILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  ++  PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  SLLRQWRRQQVDLPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   DL +NL ++ V VQ   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +D+     ++V I  LR+KL     GK+ I TV G GY L  ++
Sbjct: 181 WQDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLESSS 220


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 49  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 108

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 109 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 168

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G L+++  A+   V G R+ LT +E+ ++   +       ++   
Sbjct: 169 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 227

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 228 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 274


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|309779354|ref|ZP_07674116.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921912|gb|EFP67547.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 244

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 128/242 (52%), Gaps = 17/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49
           MR+LL+EDD  +  S+   L+ + F + +V D GE  +                 FD ++
Sbjct: 1   MRVLLVEDDDMIGDSVRKGLRHDGFAIDWVRD-GEAAVHAVTAPGAASAESGSTLFDLML 59

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LDLGL    G +V+R +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL 
Sbjct: 60  LDLGLPKRDGLDVVREVRQRGIAIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 119

Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           AR+ A++RR  G A  L+  G++ +N   + V   G  + L+G+E+ ++  L  R     
Sbjct: 120 ARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGVPVKLSGREFAVLHALLARPGKVW 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A    
Sbjct: 180 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREASTSP 234

Query: 230 CE 231
            E
Sbjct: 235 AE 236


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 10  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 70  VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 190 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 227


>gi|229062765|ref|ZP_04200070.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228716525|gb|EEL68228.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +        G+ +    ++D I+LD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKLHNENQGLNIIYEQDWDIIVLDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMVE 225


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 113/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + L+L+   F V     G   ++L      D ++LD+ +    G EV
Sbjct: 4   ILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS +    DKV GL +G DDY+ KPF+  ELVARI A +RR    
Sbjct: 64  CRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNRF 123

Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A +  V         G L V+LD   V V G  + LT +E++++ LL+ R     + E  
Sbjct: 124 APAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLEEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +D  D    K I   I  LR KL  AAGG   +ETVWG GY LR  
Sbjct: 184 HQGAWDNHDPVADKTIMAHISNLRHKL-GAAGGAGLVETVWGFGYRLRST 232


>gi|255279876|ref|ZP_05344431.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255269649|gb|EET62854.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 246

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           ++ILLIEDD+ L  SI   L+   + V     GE  +   L   Y +D  I+D  L  + 
Sbjct: 19  IKILLIEDDRELCRSIRRELEKNGYMVECCSDGETAMFYALNTDYGYDIAIVDRMLPVVD 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  ++RA+R   I  PV I++GMS+++D+V GL  GADDY+ KPF+  EL+AR+RA+ RR
Sbjct: 79  GLTIIRAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRALTRR 138

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + L+  GDL  +   +T++    ++ LT KE +++  L  +     ++E  +  
Sbjct: 139 PHQMQDAELLTCGDLRFDTSTRTLQCSQRKVALTAKEAELLGTLMRQPEAVFSREQLVLK 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    + E   +D +I  LR++L    G    I+T++G GY L E+
Sbjct: 199 VWGSDSDIEPGNVDNYISFLRRRLRE-LGSACQIKTIYGTGYRLEES 244


>gi|126464554|ref|YP_001045667.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332560699|ref|ZP_08415017.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|126106365|gb|ABN78895.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332274497|gb|EGJ19813.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 219

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  +I   + +E     ++T + ED +       +D ++LDL L D  G
Sbjct: 1   MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALAAVATTAYDLVLLDLNLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR  K + PV IL+    + +++ GL +GADDY+ KPF+  EL ARI A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+    +  G L V++  + ++     + L+ +E+ + E L  R  + ++K      LY
Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V++ +LRKKL     G++ IET  G GY L
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 223


>gi|269957382|ref|YP_003327171.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306063|gb|ACZ31613.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +V
Sbjct: 4   VLLAEDDPAIAEPLARALTREGYDVIVQGTGQGAIDNAG--SADVVVLDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR + +S P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G 
Sbjct: 62  ARELRGSGLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHGE 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +   D+ V++ A     QG R +HLT KE+ ++++L     + + ++  +  ++
Sbjct: 122 TTEEEELRAQDVRVDVSAHRA-FQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRDVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   K +D+ +  LR+KL + A    Y+ TV G G+
Sbjct: 181 GSDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGF 220


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|229827614|ref|ZP_04453683.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
           49176]
 gi|229788252|gb|EEP24366.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
           49176]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 121/203 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K+L+ +++ +L++  ++V     GE+ ++  +   +D +ILD+ +    G 
Sbjct: 1   MRLLLAEDEKSLSKAVKAILEAGKYSVDAVFDGEEALDYLETDTYDGVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV +L+  S ++DKV GL  GA+DY++KPF  +EL+ARIRA+ R   
Sbjct: 61  TVLKELRNKGNLIPVLLLTAKSEVDDKVEGLDLGANDYLTKPFEPKELLARIRAMTRSKM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G++S+N  +  +  +     L+ KE+QM+ELL       ++ E F+  ++ 
Sbjct: 121 AEGDSVLEYGNVSLNRASFVLSTKTGEFKLSNKEFQMMELLMSYPKNLISAEKFMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
              E ++ ++ V+I  LRKKL++
Sbjct: 181 FDTEADISVVWVYISYLRKKLAS 203


>gi|291297687|ref|YP_003508965.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290566907|gb|ADD39872.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 218

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  I + L+     V V   G+  ++ C F  +D ++LD  L  + G 
Sbjct: 1   MRVLLVEDEEPLAGYIAVGLRKHGLAVDVAHDGQTALDKCDFTPYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + L  A+ +  V +L+   ++ED+V GL  GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  TVCQRL-AAQGTARVLMLTASGTVEDRVDGLSLGADDYLGKPFAFSELIARVRALARRSA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   D+  +   +TVE  G  IHLT KE+ ++E L       ++ E  L+ ++D
Sbjct: 120 PARPPLLRAADVVCDPARRTVERAGRPIHLTPKEFGVLEQLLAAGGDVVSAETLLDKVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P      + +  LR+KL    G    I+TV G GY
Sbjct: 180 EHADPFSNAPRITVGTLRRKL----GEPPLIQTVTGAGY 214


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGNE 239


>gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L   +F   +    E   +L     FD ++LD+GL D  GFE+
Sbjct: 11  ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGFEL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR  +   PV +L+      D++ GL+ GADDYI KPF+  ELVAR++A++RR++  
Sbjct: 71  LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTQ 129

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+S  V  D   +  A  +  QG  + LT  EY+++  L  R     ++E  L  +
Sbjct: 130 PAAEAESAPVWHD---DAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + G    +   I+  I  LR KL  A     +I T  G GY   E 
Sbjct: 187 FGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNET 232


>gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 222

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L   +   L    +   +V +  E   + C    +D ++LDLGL    G
Sbjct: 1   MRLLLVEDDPVLGAQLHKQLGKAGYAADWVQNGNEAEAQGC-IEPYDLVVLDLGLPGKSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+  R   +  PV +L+   + ++KV G  +GADDY+ KPF  EEL+ARI A+++R+
Sbjct: 60  LDVLKGWRAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G A   +    L ++   +TV+V       LTG E++++    L     L+K     H+
Sbjct: 120 VGTAPESLKAKGLLLDETLQTVKVDNEEPQQLTGTEFRLLRYFMLHPGQPLSKTRLTEHV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           Y+   + +  +++V++ +LRKK+     G  +I+T  G+GYV  E A
Sbjct: 180 YEYDADKDSNVMEVYVNRLRKKI-----GAQWIQTRKGQGYVFGEPA 221


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+  N++V V + G+   +L    +FDAI+LDL L  + G  
Sbjct: 3   KILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  KISTPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q      +I   DL ++ + K V      + LT +EY+++   + R    + +E  L 
Sbjct: 123 DHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E +++D+ I  LR+K+         ++TV G GY +
Sbjct: 183 AVWGYEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGYTM 227


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  IE+ LK E F V     G++G+   K+  +D IILDL L  + G E
Sbjct: 4   KILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV GL  GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIREFS-EVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
            + Q   V  DL +N     V      I L+ +E+++++ L L K   L+++  L ++  
Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             Y G D     I+D++I  LR K+      K +I+TV G G++ +
Sbjct: 183 FEYIGND----NILDLYIKYLRDKIDKPYERK-FIQTVRGLGFIFK 223


>gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L    ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G +++     GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGF-EHPMIHTVRGAGYVIRAD 227


>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 244

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 20  MKLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGW 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 80  EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I TV G GY++
Sbjct: 200 DMNFDSDTNVIEVAVRRLRAKVDDDFEHK-LIHTVRGMGYMM 240


>gi|157368725|ref|YP_001476714.1| DNA-binding transcriptional regulator BasR [Serratia proteamaculans
           568]
 gi|157320489|gb|ABV39586.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + L L  E +         +   L    ++  IILDLGL D+ G 
Sbjct: 1   MKLLIVEDDELLQQGLALALAGEGYACDCAATAAEANALLLTSQYSMIILDLGLPDMDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  ++  PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  SLLRQWRRQQVELPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   DL +NL ++ V VQ   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GHSDNLMQLDDLQLNLSSQQVYVQQQPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +D+     ++V I  LR+KL     GK+ I TV G GY L  ++
Sbjct: 181 WQDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLESSS 220


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224


>gi|146305829|ref|YP_001186294.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574030|gb|ABP83562.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 129/231 (55%), Gaps = 17/231 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA  +  +L+ + +      LGE G+E       D ++LD+ L D+ GF 
Sbjct: 7   RILIVEDDRTLATQLGELLRGQGYATSACHLGEAGLETALREAPDLLLLDVMLPDVNGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR  +  TPV +L+   + E+++RGL+ GADDY+ KPFN  EL  RI A++RR+R 
Sbjct: 67  VLRRLREQQ-QTPVIMLTACGAEEERIRGLRHGADDYLPKPFNITELQLRIDAVLRRTRP 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK--- 171
                 G  Q L V  +L ++  A+   V G  + LT  +++++ LL   +   L+K   
Sbjct: 126 QETARGGQPQQLQVD-ELHLDRHAQLARVAGCDLALTPLQFRLLWLLVSHRGEALSKPYL 184

Query: 172 -EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             M L   Y   D    + +D+ + ++R++L+ A  G + ++T+ GRGY  
Sbjct: 185 YRMALEREYSQYD----RSLDMHVSRIRRRLAEAGLGADRLQTLHGRGYAF 231


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G L+++  A+   V G R+ LT +E+ ++   +       ++   
Sbjct: 126 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++ + LK+  + V     G   +++ +    D +ILDLGL DI G  V
Sbjct: 4   VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L  LR    ++PV +LS     +DKV  L +GADDY++KPF  +E +AR+RA VRR+   
Sbjct: 64  LSKLR-EFCASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRRTGLV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A + +VT    VN +A+TV   G  + LT  E++++++L    +  ++++  L+ ++  
Sbjct: 123 DAPAPVVTDAFEVNFEARTVTRDGKPVRLTPTEWKIVDVLVRNADRLVSQQTLLHEVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + V++ +LR+KL        Y  T  G GY
Sbjct: 183 SYSRETNYLRVYLAQLRRKLEPDPAHPRYFVTEPGMGY 220


>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +A  +   L+   + V     G +         +D +ILDLGL  + G 
Sbjct: 1   MRILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+ +    D+V+GL  GADDY+ KPF   EL AR+RA+ RRS 
Sbjct: 61  EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I  G L+ +   +  ++QG  + L+ +E  ++E+L  R    ++K+  ++HL  
Sbjct: 121 GTSPT-IQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+     G   I TV G GY L
Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIEP---GGVKIATVRGLGYCL 217


>gi|332535973|ref|ZP_08411666.1| transcriptional activator of copper resistance [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034654|gb|EGI71212.1| transcriptional activator of copper resistance [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG  L     FD IILD+ L D+ G+
Sbjct: 1   MRLLVVEDEAKTGDYLKQGLSEAGFQVSLARNGLDGHHLAMTELFDVIILDVMLPDVSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L++LR A   TPV  LS   SI+D+V+GL+ GADDY+ KPF   E++AR+R ++R  R
Sbjct: 61  KILQSLREADNKTPVLFLSARDSIDDRVKGLELGADDYLIKPFAFAEVLARVRTLIR--R 118

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  Q+   +++  DL +++  + ++  G RI L+ KE+ ++ELL  R+   L + +  + 
Sbjct: 119 GAVQTVDDILIVADLEMDIPKRKIQRAGKRILLSNKEFSLLELLLRREGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRAKVDDDFTVK-LIHTVRGMGYKL 221


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 223


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSSTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+ +       G  +     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 239


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD A++  + ++L +E F+ V VTD G   +E     + D I+LDL L  + G 
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETASREQPDLILLDLMLPGMNGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R  + S P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +R + 
Sbjct: 63  DICRLIR-QESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATV 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDLS+++ A TV+  G  I LT  E+ ++  L+ +     T+E  L  ++ 
Sbjct: 122 DEPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
 gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++A+   +   L +  + V     G + ++       D +ILDLGL DI G 
Sbjct: 6   LRILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGV 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
           EV+R +R    + P+ ILS     +DKV  L +GADDY++KPF  +EL+ARIR  +R R+
Sbjct: 66  EVVRRIREWS-NVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRT 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++    DL V+L  + V VQG+R+ LT  EY +I++L       LT    L  ++
Sbjct: 125 PDQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E  ++ V I  LR+K+        YI T  G GY LRE+
Sbjct: 185 GPAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRLRED 229


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
 gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + LK     V   +  ++          D  ++DLGL D  G 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++  R   +S P+ +L+   S ++KV+ L SGADDY++KPF  EELVAR++A++RR+ 
Sbjct: 61  SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   +  ++L  K   V G  + LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKK+      +  I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQQFH-AQEVIVTVRGQGY 218


>gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 257

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 11  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMSGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCL 228


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 44  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 104 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L V G L+++  A+   V G RI LT +E+ ++   +       ++   
Sbjct: 164 LARDSRIDAGTLDVAG-LAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 222

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 223 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 269


>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 229

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++AL      ML+ E ++V V   G+ G +L     +D +ILD  L +  G 
Sbjct: 1   MRILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R++R      PV  L+   +++D+V+GL +GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               S    +  GDL ++   +    Q  RI L+ KE Q++ +L       ++ +     
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQARRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   + P   ++   I  LR+KL  A G    I +V+G+GY
Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKL-EAPGETPLIFSVYGKGY 221


>gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 4   IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 124 EPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|241665358|ref|YP_002983717.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|240867385|gb|ACS65045.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 279

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE----------FDAII 49
           MR+LL+EDD  +  S+   L+ + F + +V D GE  +                 FD ++
Sbjct: 36  MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRD-GEAALHAVTAPGAGGAEAGGTLFDLML 94

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LDLGL    G EV+R LR   I  P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL 
Sbjct: 95  LDLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELA 154

Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R     
Sbjct: 155 ARMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVW 214

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +     ++LY   +E     ++V+I  LRKKL     G + I+ + G GYV+        
Sbjct: 215 SIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVIPRETSASP 269

Query: 230 CE 231
            E
Sbjct: 270 AE 271


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 3/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD AL   +   L+ E +   V   G++     +  E+D I+LD+ L    G E
Sbjct: 4   RILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR  K  TPV +L+      D+V GL+ GADDY++KPF+  EL+ARI+ I+RR   
Sbjct: 64  ICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRNL 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G + +  +   V ++G ++ LT KE++++ LL   K   L ++  L  L
Sbjct: 124 DLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D  D  + +++DV + KLR+KL++       IETV G GY   E   +E
Sbjct: 184 WDYGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFEEKGYEE 233


>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++      +  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL+ARI++++RR   H
Sbjct: 67  CKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E  +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKETIR 232


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A+ +   L+ E + V     G + +E  +  + D I+LD+ L ++ GF+V
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LRA+R A    PV IL+      DKV GL+ GADDY++KPF+  ELVAR++A +RR+   
Sbjct: 65  LRAIRQAS-GVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123

Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R H ++   V  DL ++L   TV   G  I LT +E+Q++ +L+       T++  ++ 
Sbjct: 124 LREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL        Y+ T  G GY +R
Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228


>gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P  
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      
Sbjct: 118 RQSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ D ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S   +I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I+TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223


>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 238

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
            R+L +EDD+ LA      L+S    V +V D G+ G+      + D +ILDL L    G
Sbjct: 9   FRVLFVEDDERLAALTTRYLESHGHAVTWVAD-GQLGLAEALKGQHDVVILDLMLPRKSG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R LR A++  P+ +L+ +    D+V GL++GADDY++KPF+  EL+AR+RA+VRR 
Sbjct: 68  LEVCRELR-ARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRG 126

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RG     + +I  GDL ++    +    G  + LT  E+ ++ +L+ R    LT+E  L+
Sbjct: 127 RGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLLD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 DE   + ID  I +LR KL +       ++TV G GYVL
Sbjct: 187 LTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVL 231


>gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 230

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +   L    + V V   GE+G    +  ++D ++LD+ L  + G 
Sbjct: 1   MRILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGT 60

Query: 61  EVLRALR--------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            + + LR         A  + PV +L+   ++ DK+ GL +GADDY++KPF+  EL+ARI
Sbjct: 61  LLCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARI 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA++RR    +  L+  G L +N         G  + LT KE+ ++ELL       L++ 
Sbjct: 121 RALIRRGSSTSSVLLSWGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +  ++   D P  + +   I  LR KL +    +++IETV G GY L+
Sbjct: 181 GIIERVWSLDDSPAEETVTSHIRGLRHKLKSLGAPEDFIETVHGLGYRLK 230


>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
 gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
          Length = 231

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227


>gi|327402470|ref|YP_004343308.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317978|gb|AEA42470.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 129/229 (56%), Gaps = 19/229 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           M+IL+IED+  LA  +   L S++   Y+ +  ED    I+    Y +D ++LDL +   
Sbjct: 1   MKILIIEDEHELAQDVIGYLTSQD---YLCEHAEDYNQAIDKISAYTYDCVLLDLMIPFG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL  L+  K S  V I+S   +++DK++GLQ GADDY++KPF+  EL ARI +++R
Sbjct: 58  DGLEVLEKLKTEKRSDGVIIISAKGALDDKIKGLQLGADDYLAKPFHLSELSARIYSVIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + I   DL+V++ +KTV V    + LT KE+ ++ L    KN  ++K     H
Sbjct: 118 RKQFDNSNTITHDDLTVDMLSKTVTVGSKIVSLTKKEFDLLLLFLGNKNKVISKNALAEH 177

Query: 178 L-------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L       +D  D      +   +  L+KKL+  AG +NY++T++G GY
Sbjct: 178 LSGDIADMFDNHD-----FVYAHVKNLKKKLTE-AGCENYLKTIYGTGY 220


>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A  ++  L    + V     G  G+   +      I+LDLGL D+ G E
Sbjct: 15  RILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGSE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  +      P+ +L+   ++E KV+ L  GADDY++KPF+  EL+ARI+  +RR  G
Sbjct: 75  IARRAK-QHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRR--G 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   GDL + ++ + V   G  + L+ KE+ ++ELLS R     +++    H++  
Sbjct: 132 EGGEVRRVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGK 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E E  ++DV +  LR KL   AG   Y+ TV G GY LR+ A
Sbjct: 192 PLETESNVVDVHVANLRAKLRE-AGAYGYLRTVRGVGYALRKPA 234


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L+ E F+  V   G + +      + D I+LD+ L  + G +
Sbjct: 28  KILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMNGVD 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +LS  +   D V GL+SGADDYI+KPF  +ELVAR+RA +RR   
Sbjct: 88  VCRAIRKTS-GVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GDL +++    V+  G  I LT  E+ ++  L+ R    LT+E  L  ++  
Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWGY 206

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   + ++++V I +LR K+         I+ V G GY + E
Sbjct: 207 KQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKIGE 248


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF+
Sbjct: 17  RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  G
Sbjct: 77  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           HA          ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++
Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N 
Sbjct: 197 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDPESA-HIDSIRGVGYKLVVNP 248


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +V GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224


>gi|289662555|ref|ZP_06484136.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667795|ref|ZP_06488870.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|229026557|ref|ZP_04182906.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734734|gb|EEL85379.1| DNA-binding response regulator [Bacillus cereus AH1272]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVCGLTQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEY 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGDNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|163797997|ref|ZP_02191938.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159176718|gb|EDP61290.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 223

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED + +A ++          +          +     E+D +ILDL L D  G 
Sbjct: 1   MRILLVEDTEDVAEAVVATFTRHGHAIDHAPSCAAAEDALAVQEYDLVILDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LRALR A+ + PV +L+    ++D+V  L +GADDY+ KPF+  EL AR RA++RR  
Sbjct: 61  ETLRALRAARRTMPVLVLTARLDVDDRVAALDNGADDYLMKPFDLRELEARARALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G+L+++   +T  V G  + LT +E+ ++E L + +   ++KE   + L+ 
Sbjct: 121 DERSGVIEYGNLTLDAAGRTAAVAGQPLALTRREFGLLEALLVNRGRVMSKERLFDRLFS 180

Query: 181 GRDEPEVKI--IDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE EV I  ++++I +LR+KL   A  +  I T+ G GY
Sbjct: 181 F-DETEVGINAVELYIARLRRKL---AASQVSIRTLRGLGY 217


>gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
 gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
          Length = 227

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G+ GI      ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLGGEGFNAELVLTGKAGIAAALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVSSADDSIISHGDLTLNPSTRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+  AG K  IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALAGNKLNIETVRSIGYRIR 227


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   LK E ++  V   GE+ + + K    D ++LDL L  I GFE
Sbjct: 5   KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R +R     +  P+ +L+      D V GL+ GA+DYISKPF+  ELVARIR I+RR 
Sbjct: 65  VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ ++ G LS+++    V V  + + LT  E+Q++  L  +K    T+   +
Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++        + +DV I  LRKKL   A   ++IETV G GY  RE A
Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPCA---DFIETVRGVGYRFREEA 231


>gi|254422112|ref|ZP_05035830.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189601|gb|EDX84565.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  LA S+   L +E + V V   GE G    +  ++D  ++D+ L  + G 
Sbjct: 1   MRLLLIEDDIQLAESLSEALTAEQYIVDVVKDGEAGWSQMQTLDYDLTLMDVTLPYLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      PV +L+   + +DKVRGL +GAD Y+ KPF+  EL+A+IRA++RR  
Sbjct: 61  GLCQRLRSRGHQLPVLMLTARDTSQDKVRGLDAGADAYMVKPFDLSELLAQIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +    L +N +          + LT KE+ ++ELL       L++   L  L+ 
Sbjct: 121 IPAAIALAYEHLQLNPETYEASYAQQALRLTPKEFSILELLMRNGRRVLSRSFILESLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +  P+ + +   I  LR KL  A   K++IETV G GY L+
Sbjct: 181 LQSPPDEETVKAHIKSLRNKLRAAGAPKSFIETVHGVGYRLQ 222


>gi|94314591|ref|YP_587800.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93358443|gb|ABF12531.1| DNA-binding response regulator in two-component regulatory system
           with CopS [Cupriavidus metallidurans CH34]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  +     +D +ILD+ L DI G+
Sbjct: 1   MKLLVVEDETKTGEYLRQGLTEAGFIVDLVHSGLDGQHMALNESYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R A    PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RILQNIRAAGNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    I   DL ++L  +     G RI LTGKE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 AQAPVDRIQIADLVLDLARRRATRAGRRIVLTGKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDDK-LIQTVRGMGYVL 221


>gi|309784349|ref|ZP_07678988.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           1617]
 gi|308927856|gb|EFP73324.1| transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           1617]
          Length = 188

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/184 (37%), Positives = 107/184 (58%), Gaps = 5/184 (2%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
            +  ++LDLGL D  G   L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF
Sbjct: 10  HYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPF 69

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
             EEL ARIRA++RR     +S ++ G+L++N+  + V + G  + LT KEY ++  L L
Sbjct: 70  ALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLML 129

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  + + +E+  N +Y+  +EP    ++V I  LR K+     GK  I TV G GY+L  
Sbjct: 130 KAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKARIRTVRGFGYMLVA 184

Query: 224 NAKD 227
           N ++
Sbjct: 185 NEEN 188


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D +E    Y  D +ILD+ +  + G  
Sbjct: 12  RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 72  AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSTY 131

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A   +   DL ++L  + V      + LT  E+ ++E+        LT+E 
Sbjct: 132 ATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 244


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 10  RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A          ++   DL ++L+ + V     R+ LT  E+ ++E+        LT+E 
Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR    D
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242


>gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
 gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
          Length = 221

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/227 (37%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   I   L+ E   V +VTD G          EFD ++LD+GL    G
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTD-GVAAENALVTDEFDLLVLDIGLPRRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR LR     TPV +L+    + D+V GL SGADDY++KPF  +EL AR+RA+ RR+
Sbjct: 60  LDILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFYLDELQARVRALTRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY
Sbjct: 120 TGRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +       G D ++    Y  D I+LD+ +  + G  
Sbjct: 9   RILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R LR A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 69  AARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSAY 128

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 129 AAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTREQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 189 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGESRLVHTVRGVGYVLR 236


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD ++A  +E+ L +E + V V + GE G+ L +    D II+D+ L  + GFE+
Sbjct: 19  VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR LR  + + PV +LS   +  DKV GL+ GA+DYI+KPF+  EL+AR++A++RR   +
Sbjct: 79  LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     L   GD+ +N   + V      I LT  E+ ++  L+      L++E     ++
Sbjct: 139 RADGAQL-RAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + ID FI +LR KL   A    ++ TV G GY
Sbjct: 198 GPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGY 237


>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD A+A ++   L +E + V     G  G++      FD ++LD+ +    G+
Sbjct: 1   MRVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A++ TPV +L+      D+      GADDY++KP++   LVAR+RA+ RR  
Sbjct: 61  EVVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G LS++  A  V+     + LT +E+ ++E L   K   +TK   ++ ++D
Sbjct: 121 PERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  +++V+I  LRK++    G K+ I+TV G GY L ++ 
Sbjct: 181 VNYTGDENVVEVYISYLRKRIDAPFGCKS-IQTVRGVGYRLDDDG 224


>gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
 gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC20]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 137/233 (58%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL +ED+ ++A ++  +LK ++++V +   GE G++      +D ++LD+ L  I G 
Sbjct: 1   MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   I TP+ +L+  S ++DKV GL +GADDY++KPF  +EL+ARIR++ RR  
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  +  G++ +  +   +    +++ L+ KE +++EL   R    L+KE  +N ++
Sbjct: 121 LDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILSKETIINKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230
               + E   +++++  LRKKL+   A  G   I T+   GY+L+  +K+  C
Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPPC 228


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ +K+E +   +   G++ +   +   +   IILD+ + ++ G
Sbjct: 1   MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+RA++RR+
Sbjct: 61  TEVLKEVRKDN-PVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119

Query: 120 R-GHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + G AQ+   ++  G L++N D+  V    G  I+LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNGLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR KL +A GG   ++TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGY 224


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR   +  PV  L+   ++EDK+ GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 74  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 133

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     + I   D+ ++ D + V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE
Sbjct: 194 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 237


>gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 222

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+ ED+  +A  +E  L+++ F   V  D GE  +++   +EFD +I+DLGL    G 
Sbjct: 3   RILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGET-LDMALSHEFDLLIMDLGLPGKDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      P+ IL+    I DKV GL+ GADDY++KPF  EEL+AR+R  +R + 
Sbjct: 62  QVLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNH 121

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   + ++  G +S++L  + V V+G R+ L+ +E+ + E L       +++E  L+H
Sbjct: 122 LPKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSH 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   I+DV+I  LRKKL     G + IETV G GY LR
Sbjct: 182 VWGYDYDPGSNIVDVYIGYLRKKL-----GSDLIETVRGMGYRLR 221


>gi|254000070|ref|YP_003052133.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253986749|gb|ACT51606.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 221

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +  S++  L+   + V     G   I      ++D ++LD+GL    G 
Sbjct: 1   MRVLLIEDDLMVGESLQEGLRDAAYAVDWIRSGNLAIPAFTHEQYDLLLLDIGLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  +   PV +++   +IED++RGL  GADDYI KPF   EL+AR+RA++RR  
Sbjct: 61  SILTTLRAMRNPLPVIVITARDAIEDRIRGLDLGADDYIVKPFELSELMARVRAVMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    L+  G L++N     V ++    H L+ +EY ++E L +R    L++      +Y
Sbjct: 121 GEGMPLLSNGSLTLNPMTHEVLIEPDICHALSKREYALLEALLIRPGAILSRSELETKVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E E   I+  +  LRKKL N       I+ + G G+++ +N 
Sbjct: 181 GWGEEVESNAIEFLLHSLRKKLGNTT-----IKNIRGVGWMISKNG 221


>gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
 gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
          Length = 222

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A ++   LK + + V   + G           +D I+LDLGL    G 
Sbjct: 1   MRILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R  + +TP+ IL+    I+ ++ GL  GADDYI KPF   EL ARIRAI+RR  
Sbjct: 61  QVLQHTRALRNATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  L+  G + +N      T+E Q   I L+ KE+ +++ L  R     ++    + +
Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ID  I  LRKK+     GK +I+ + G G+++
Sbjct: 181 YGWGEEVESNAIDFLIHSLRKKI-----GKEHIKNIRGVGWMM 218


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+ + I   L+ E +  +  + G   I      + D ++LDLGL D+ G +V
Sbjct: 6   ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDMDGVQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R      P+ ++S  S   DK+  L +GADDY++KPF+ EEL AR+RA +RR    
Sbjct: 66  IAKVRTWS-QMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRRLQYL 124

Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    +S + T G L+++  A    + G+ +HLT  EY+++ LL+      LT      
Sbjct: 125 SASAEMESAVFTNGGLTIDFAAGCASLDGNELHLTPFEYKLLCLLARHVGKVLTHSFITK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKK+   A    YI+T  G GY
Sbjct: 185 EVWGSSWEGDVASLRVFMASLRKKIEADAAHPQYIQTHVGVGY 227


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E ++V     G + +E+      D ++LD  L +I G E
Sbjct: 10  KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R +  STPV I++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S  H+Q  I   DL +  DA TV   G  + LT +E+ ++  L+ R    LT+
Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  L  ++      +V+ +DV + +LR+K+ ++      + T  G GY ++ ++
Sbjct: 189 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 242


>gi|300693441|ref|YP_003749414.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Ralstonia
           solanacearum PSI07]
 gi|299075478|emb|CBJ34771.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum PSI07]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 1   MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+R
Sbjct: 58  DGWQVIRELRRHK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTAAR 224


>gi|270308399|ref|YP_003330457.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154291|gb|ACZ62129.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 222

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DDKAL  +++  L      V     G  G    +  EFD +ILD+GL+D  G 
Sbjct: 1   MRILLVDDDKALCQTLKRALGELGHVVEYACDGISGEYFARNGEFDLMILDIGLSDKNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+ +L+   ++E KV+ L +GADDY+ KPF   EL ARIRA+ RR+ 
Sbjct: 61  EVCRMVRAEGAALPILMLTAKDTLESKVKSLDAGADDYLCKPFAYSELFARIRALQRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G +  N  +  V+   + I LT  E+QM+E      N  +T+ M   HL+ 
Sbjct: 121 RVMAPVVEIGGIFFNNLSHEVKNGNNEIKLTSAEFQMLEYFITMPNVLITRSMMEEHLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221
                    ID  I KLR+KL  +A  G   I+T+ G GY L
Sbjct: 181 AESISASNSIDSLIKKLRQKLGWDARTGP--IKTLRGAGYRL 220


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 16/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DD  +A  I L L  E F   + + GE+   L  F+ F  D I+LDL L  I G
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETLIVNDGENA--LTAFFRFKPDLILLDLMLPGIDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R    +TP+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 64  YQVCREIRREN-NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRY 122

Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                +          I   DL +NL   +V   G  + +  KE +++  L+   N   T
Sbjct: 123 TATQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L+H++      + + +DV I +LR+K+ +    K  I TVWG GY
Sbjct: 183 REQLLDHIWGYEYVGDTRTVDVHIKRLREKIHDHE--KWSIGTVWGVGY 229


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L++E F+      G+  +   +  + D ++LD+ L    G +
Sbjct: 4   RVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKDGTQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VAREIR-AESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                ++ GDL +++   TV   G RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PGPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGY 220


>gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 248

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/231 (38%), Positives = 122/231 (52%), Gaps = 17/231 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F   V   G D I + +  + D +ILDLGL  I G E
Sbjct: 16  RALVVDDELPLAEVVASYLEREQFEAVVAGNGVDAIAVARDLDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRI 134

Query: 121 -----GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  A+         G LS+++ A+ V +    I LT  E+ ++E LS R    L++
Sbjct: 135 LQTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  +   RDEP V    ++DV I  LR+KL + A    YI TV G GY
Sbjct: 195 RQLLEII---RDEPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGY 242


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 123/231 (53%), Gaps = 17/231 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  IE+ LK E + V     GED IE+ +    D ++LD+ +  + G+EV
Sbjct: 6   ILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKMDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRQIR-TKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT----- 170
            Q       S++  G + ++ + +TV V G RI LT KE+ ++ LL+       +     
Sbjct: 125 NQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++ N  YD  +      + V I  LRKKL         I+T+WG GY  
Sbjct: 185 QQIWTNDYYDDNN----NTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 231


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 9   RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR   +  PV  L+   ++EDK+ GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 69  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     + I   D+ ++ D + V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE
Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGYVMRE 232


>gi|302386537|ref|YP_003822359.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197165|gb|ADL04736.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+  LA ++  ++K +++   +   G DG+      E+D IILD+ L    GF
Sbjct: 1   MKVLIAEDEIRLADALGQIMKEQHYQADIVYNGTDGLYCGLSGEYDIIILDVMLPGENGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR A I TPV +L+    I DKV GL  GADDY++KPF  EEL+ARIRA+ RR  
Sbjct: 61  HVVQKLREAHIQTPVLMLTARDDIHDKVTGLDKGADDYMTKPFVPEELLARIRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD  +NL A  +      IHL  KE++++++L       ++KE+ ++ ++ 
Sbjct: 121 EVIVEEMKYGDFILNLSANDLCCGSKSIHLGYKEFEVLKILMNNSGKIISKEILISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + E   ++ +I  LRKKL    G K  I TV   GY L E
Sbjct: 181 SDSDAEDNNVEAYISFLRKKL-KFIGSKVEIGTVRKVGYRLEE 222


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   +   L    + V     G++G+++      D +ILD  + D+ G EV
Sbjct: 6   ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A  + P+ +L+    + D+V+GL++GADDY+ KPF  EEL+AR++A++RR+   
Sbjct: 66  CKRLRSAD-NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRASPD 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           ++ ++   DLSV+L  + V+     I LT KE+ ++          LT++  L  ++   
Sbjct: 125 SRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWGFD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            E E  ++ V++  LR KL  A G    I T+ G GYVLRE+
Sbjct: 185 MEVESHVVAVYVGYLRDKL-EAGGESRLIHTLRGVGYVLRES 225


>gi|71275673|ref|ZP_00651958.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71897783|ref|ZP_00680009.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170729506|ref|YP_001774939.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|71163564|gb|EAO13281.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71732338|gb|EAO34392.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167964299|gb|ACA11309.1| response regulator receiver protein [Xylella fastidiosa M12]
          Length = 231

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 12/237 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LLIED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  LR    +TPV IL+   +IED+V  L  GADDY+SKPF+  E  AR R ++R
Sbjct: 58  DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG+A  ++  G    +  +  + + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RNRGNASEVVRIGGFEFDNASHRIRLHGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231
           L++  D      I++++ +LR+KL  A      I TV   GY+L    E    E C+
Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRRAGYLLEPIVEGRGHEACD 231


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 133/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+ +          I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 133/228 (58%), Gaps = 14/228 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIP 58
           RIL+ ED+  +A  ++  L+    N ++T + EDG E     +  +++ +ILDLGL  I 
Sbjct: 3   RILIAEDEPHIAAFLDKKLRD---NGFITTIAEDGYEALNQVRHEQYNLLILDLGLPGIE 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVL  LR      P+ IL+    + DKV GL+ GA+DY++KPF+ EEL+ARIR  +R+
Sbjct: 60  GTEVLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQ 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A+  +  G++++++ ++TV V   R+ L+  E+ +++ L    +  L+++  L
Sbjct: 120 PSTPEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQIL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N+++    +    I+DV+I  LRKKL+     +N IETV   GY LR+
Sbjct: 180 NYVWGYDYDSSSNIVDVYIGYLRKKLN-----RNLIETVRSVGYRLRK 222


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 131/228 (57%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD++++  ++  L  E F+V     GE+GI+L +   FD I+LDL L  + G +
Sbjct: 31  QILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNGMD 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  +   PV I+S      +K  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 91  LLKIIR-EQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +A       ++I   +L+++++   +  +   I LT KE+Q+I+LL        T+E   
Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 210 RSVWNEDYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 257


>gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 219

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDDK +   I+  L    F+V + TD G+ G        +DA++LDL L +I G
Sbjct: 1   MRILLVEDDKLIGDGIKTGLSKLGFSVDWFTD-GKTGQAALYSAPYDAVVLDLTLPEIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS
Sbjct: 60  LEMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +S +  G + ++  +    + G  + L  KE+ ++ELL       L ++     LY
Sbjct: 120 HGQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 180 NWDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 224

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 5   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 65  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 185 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 220


>gi|89096971|ref|ZP_01169862.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088351|gb|EAR67461.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 254

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           ++ILL EDD+ L   I  +LK + F    +V + GED  E  K   +D +ILD  + +  
Sbjct: 31  LKILLAEDDEYLGELIVHLLKKKGFGKADWVME-GEDAYEYAKASYYDVLILDWMMPNGD 89

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R LR    S  + +L+   ++ D+V GL++GADDY+ KPF  +EL AR++A+ RR
Sbjct: 90  GISVCRRLRREGYSGAILMLTARDAVSDRVEGLEAGADDYLIKPFEIDELAARLKALSRR 149

Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                Q  +I    L +N  + T+ + G  I LT +EYQ++E+L   K   LT+EM L+ 
Sbjct: 150 MLAPLQEDVIQWKSLELNRTSHTLFLNGEEIFLTPREYQLLEMLLRNKGQVLTREMILDR 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +  +K ID  I  LRKK+ +  G  + IET+ G GY
Sbjct: 210 IWGIESDVSMKTIDATIKLLRKKI-DKHGTNSLIETIRGVGY 250


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E F+      GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ +I   ++ V+   + V + G+ + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLF 224


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + L    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q           I  GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235


>gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
 gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L  E +NV     G+  ++  +  E+D +I+D+ +  + G 
Sbjct: 1   MRMLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMIPHVNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV  L+     +D VRGL +GA DY++KPF   E +AR+R ++R   
Sbjct: 61  EVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  G L V+++       G  I LT +EY ++E L+  +N  +T+E    ++++
Sbjct: 121 VVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+    ++DV+I  LR+K+ +    K  I+T+ G GY L
Sbjct: 181 IDDDVNSNVVDVYIRYLRRKIDDKYDDK-LIQTIRGVGYKL 220


>gi|26990167|ref|NP_745592.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985105|gb|AAN69056.1|AE016538_5 transcriptional regulatory protein RstA, putative [Pseudomonas
           putida KT2440]
          Length = 279

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 230 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272


>gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++EDD   + +   ++K+     +V D   DG+          +D I++D  L  +
Sbjct: 4   MRILIVEDD---SEAGAYLVKAFREQGHVADHEVDGLAGYAAASDGRYDVIVVDRMLPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++  LR  KI TP  ILS +  ++D+V+GL++G DDY++KP+   EL+AR+ A+ R
Sbjct: 61  DGLSLISGLREQKIETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALAR 120

Query: 118 RSRGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  G  Q   V   GDL ++  A  V   G  I L  +E++++E L       +T+ M L
Sbjct: 121 RRGGAKQEETVYRVGDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++D   +P+  +IDV I +LR K+  +      + T+ G GY++RE A+
Sbjct: 181 ENVWDYHFDPQTNVIDVHISRLRAKIDKSR-ETPLLHTIRGAGYMIREGAR 230


>gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR
           [Edwardsiella tarda FL6-60]
          Length = 227

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V + D G  G  L     +D IILD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E++R LR A    P+ +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+V L ++ V   G RI LTGKE+ ++      +   L + +  + ++
Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV + +LR K+      K  I+TV G GY+L
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDFEPK-LIQTVRGVGYLL 221


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           ++IL+++DDK +   +E+  ++E +       G D I +L    +   +ILDL + ++ G
Sbjct: 17  VKILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTMPDISLVILDLMMPEMNG 76

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 77  MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 135

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++  G L +N D+  V+ ++G +I LT  E+ ++ LL+   N   + +  
Sbjct: 136 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDI 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 196 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGY 240


>gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +       L +    V   + G + +      ++D ++ D    D+ G 
Sbjct: 1   MRILLLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPDLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF   EL+ARI A+ RR R
Sbjct: 61  SALKTLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGR 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A    + +    L ++L ++T    G  + L  KE++++E+L   K    T+ M L  
Sbjct: 121 AEAAETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  + +LR K+     G  +I+TV G GY+ 
Sbjct: 181 VWDINFDPSTSVVETHMSRLRNKIEKPF-GLEFIKTVRGSGYMF 223


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 136/236 (57%), Gaps = 17/236 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L +DG   ++L      DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSR---GHAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171
           R+    G  +S  +T  DLS  LD  T EV +G R I LT  E+ ++E+L       LT+
Sbjct: 120 RTTPDDGAGESAAMTFSDLS--LDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTR 177

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231


>gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +IV     ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL  A   +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKL-QAEYPQEVITTVRGQGY 218


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   +   L  E  +V  +  G D +++    EFDA++LD+ L  + GF
Sbjct: 1   MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   +  D +RGL +GADDY++KPF+  EL+AR+RA+ RR+ 
Sbjct: 61  EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H  S +V  DL+  LD+ + EV +G R IHLT  E+ +++ L       ++++  + ++
Sbjct: 121 PHRSSTLVCEDLT--LDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +      E   +D FI  LR+K+ +  G    I+TV G GY  R+ + D+
Sbjct: 179 WGYDRAIENNTLDAFIRLLRQKV-DTQGHPKLIQTVRGFGYSARKLSGDD 227


>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
           [Dechloromonas aromatica RCB]
 gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dechloromonas aromatica RCB]
          Length = 225

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++     +   L    F V +   G DG+ L     +D  +LD+ L  I G+
Sbjct: 1   MKILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL+ +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L+   DL ++L  + V   G +I LT KE+ ++E+L  R+   L + +  + ++
Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDGFEPK-LIRTVRGMGYVL 221


>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA ++   L    ++V   D GED         +  ++LD+ L  + G 
Sbjct: 1   MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K   PV IL+   +++D+V GL  GADDY++KPF+  E  AR+RA++RR +
Sbjct: 61  AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G L  +L+A  +      + L+ +E  + E+L  R+   +TKE  ++ L+ 
Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             D+     I+V++ + RKKL         I TV G GY+L ++ + E  E
Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPY---NINIRTVRGMGYLLEKSGEAERQE 228


>gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 232

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L  ++ + L++  + V     G  G++       D I+LDLGL DI G E
Sbjct: 9   RILVVDDDAGLLRALGINLRAHGWEVTTAATGAAGLDAAGRAHPDVILLDLGLPDIGGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+  +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA VRRS  
Sbjct: 69  VIEGIR-GWSQVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSAL 127

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G     +V+ GDL ++L  + V   G  + L+  E+ ++E L   +   + +E  L  +
Sbjct: 128 VGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLREV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL + A    +I T  G GY   E
Sbjct: 188 WGPTATREGHYLRVYVAQLRRKLEDDAAAPRHILTSPGMGYRFEE 232


>gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 224

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F+V V + GE G++     ++D  ILDL L  + GF+
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRNVK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  +F V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR+  
Sbjct: 63  VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTGD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +Q       ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 ESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  YD   +P  K+IDV I +LR K+ +      +IET+WG+GY
Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRSKIEDTPSEPEFIETIWGKGY 225


>gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A ++ L+LK E F        E+ +E  +   FD ++LDL L D  G+ 
Sbjct: 3   RILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLMLPDGNGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A++  +   PV  L+ M   E  V G + GADDYI+KPF   ELV+R++ ++RR RG
Sbjct: 63  VCTAIK-READIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRR-RG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            ++S++  GDL V+    TV   G  I L+  EY++  +   R+   LT+   L  ++D 
Sbjct: 121 RSRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDI 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D      + V+I +LR K+         IETV GRGY
Sbjct: 181 AGDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGY 219


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 132/222 (59%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ ++S  + V V + G+        Y+ D +ILD+ L +I G +
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R     TPV +L+      DKV GL+ GADDYI KPF  +E++ARI+A++RR   
Sbjct: 67  VLKWIR-KDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV + +LR+KL    GG N+ IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223


>gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 216


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224


>gi|229542414|ref|ZP_04431474.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326834|gb|EEN92509.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  128 bits (321), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD+     +  ML+ E   V     GE   +   F  +D ++LD  +  + G 
Sbjct: 1   MKILLAEDDRRFGKLLHHMLEKEKHQVAWEQDGERAYDEAVFGSYDMLVLDWMMPGLEGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR       + +++   +++D V GL++GADDYI KPF  +ELVARI A+ RR  
Sbjct: 61  EICRKLRRQGFQGGIIMVTARDAVDDVVAGLRAGADDYIVKPFAFDELVARIDALGRRKL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I    L+++L++K  E  G  I LT +EYQ+ E     KN  L +E  + H++ 
Sbjct: 121 KTYQETITCAYLALHLESKQAEANGKMIPLTRQEYQLCEYFMRNKNLVLPREKIIEHIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++     +D  + ++RKK+ +  G ++ IETV G GY
Sbjct: 181 LDEDISDNALDALVKRVRKKI-DREGERSLIETVRGLGY 218


>gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F+V     G+ G +      +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR+ A++RR  
Sbjct: 61  DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G + ++  + +V + G  + L  +E  ++EL        LT+      LY 
Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSQFIRTVHGVGYTL 216


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L+S  F+  V   G++   +   Y  D ++LD+ L  + G +
Sbjct: 25  KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGID 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VL+ +R  +  TPV +L+      DKV GL+ GADDY+ KPF  +EL+AR++A++RR  S
Sbjct: 85  VLKWIR-KEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  +    L++++D+ TV   G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G D P + + +DV I +LR+KL   +  +  IETVWG GY
Sbjct: 204 -GYDYPGDSRTVDVHIKRLREKLEEGSNWQ--IETVWGVGY 241


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 23  VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+     G   +ET+ G GY LR++ 
Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246


>gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ L +++   +      V       +  +      +D  +LDL L D  G 
Sbjct: 1   MRILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R    STPV IL+ +  I +++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G   V+L A+T+  +G  + LT +E+ ++E    R N  L+K      L+ 
Sbjct: 121 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V++ +LR+KL +     + IETV G GY L
Sbjct: 181 FEAEIESNAIEVYVSRLRRKLDH-----SVIETVRGLGYRL 216


>gi|83747530|ref|ZP_00944568.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|207721816|ref|YP_002252254.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207744492|ref|YP_002260884.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83725844|gb|EAP72984.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551]
 gi|206586982|emb|CAQ17566.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206595898|emb|CAQ62825.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 235

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L   +F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLSRALAQSSF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFAMSELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++   +     ++V + +LRKKL   AG    I TV G GY+L   A
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222


>gi|326386564|ref|ZP_08208186.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208879|gb|EGD59674.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 188

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 111/181 (61%), Gaps = 4/181 (2%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           +FD ++LD  L  + G  +L+A+R A + TPV +LS + S +D+V GL +GADDY+ KPF
Sbjct: 6   QFDVVVLDRMLPGMDGLSLLKAMRAADVDTPVLMLSALGSTDDRVSGLTAGADDYLGKPF 65

Query: 104 NKEELVARIRAIVRRSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
           +  EL+AR++A++RR  G A++    +  GDL ++   + V+  G +I L  +E++++E 
Sbjct: 66  SFAELLARVQALIRRRSGPAKAQETGLRCGDLELDRLTRVVKRGGRKIALQPREFRLLEY 125

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L L +   +T+ M L  ++D   +P   +IDV I +LR+K+ +    +    TV G GY 
Sbjct: 126 LMLHQGEVVTRTMLLEAVWDYHFDPGTNVIDVHISRLRRKIDDGE-AQVLFHTVRGAGYR 184

Query: 221 L 221
           L
Sbjct: 185 L 185


>gi|313498604|gb|ADR59970.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 279

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 230 RGIEFNGTD----RSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224


>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 224

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V + G+ G E  +   FD +ILD+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N + +    +   I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+ +    K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ LA ++   L +E + V V   G D +     + + AI+LD+ L  + G+
Sbjct: 2   VRILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR    STP+ +L+     +D++  L +GADD++ KPF+   L++R+RA++RR  
Sbjct: 62  RVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  ++T    G  I LTGKE+ ++  L  R    +TK   L++L+D
Sbjct: 122 ATRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   +++V +  LR+K+ +   G   I TV G GY
Sbjct: 182 FAASATANLVEVHVSALRRKI-DVPFGAETIRTVRGAGY 219


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLG--EDGIELCKFYE--FDAIILDLGLTDI 57
           RIL++EDD     S+   L +E F V     G   D        E   D +ILD  L  I
Sbjct: 5   RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +LR LR      PV +L+   +I+D+V+GL++GADDY++KPF   EL+AR+RA++R
Sbjct: 65  DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124

Query: 118 R---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    R   Q  +   DL++NL+ + V   G  I LT +E+ ++  LSL +   ++++  
Sbjct: 125 RFTTPREPWQRSV--ADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQL 182

Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
              ++  + R  P   +IDV I +LR+K+  A+ G +  + T+ G GY+LR
Sbjct: 183 AREIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYMLR 233


>gi|23012247|ref|ZP_00052379.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 228

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  + + L      V       D         F A++LDL L D  G 
Sbjct: 9   MRILVVEDDPILSDGLRVGLSLCGATVDCVATCADADAALGTSPFAAVVLDLMLPDGSGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 69  DVLRGLRRRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++L + TV V G +I ++ +E+ ++  L  R +   +K    + LY 
Sbjct: 129 GRATASLEHGGIRLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 189 WQEEIESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 228


>gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
 gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDDK +A  I   L    + V     G +G+ + +  ++D +I+D  L ++ G 
Sbjct: 1   MHVLIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   +STPV ILS +  ++D+V GL +G DDY+ KP+   EL+AR++A+ RR  
Sbjct: 61  SVIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRG 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q   ++   DL ++   + V   G +I+L  +E++++E L       +T+ M L  +
Sbjct: 121 GEIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR K+         I T  G GY L
Sbjct: 181 WEYHFDPQTNVIDVHISRLRSKIDKDF-DPPLIHTERGAGYSL 222


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E ++V     G + +E+      D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R +  STPV I++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S  H+Q  I   DL +  DA TV   G  + LT +E+ ++  L+ R    LT+
Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  L  ++      +V+ +DV + +LR+K+ ++      + T  G GY ++ ++
Sbjct: 182 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 235


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++LK+E F  +V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRVLR-SDSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  G + +++ A  V   G  I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGY 220


>gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  L+   ++V + + G DG+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MRILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A  +TPV  L+    + D+VRGL+ G DDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLKVLR-ATHTTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++++ + V+    RI LT +E+ +++LL  R+   L++    ++++D
Sbjct: 120 PRESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR K+ +A   K  I+TV G GYV+     D
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIQTVRGVGYVIEAKEPD 225


>gi|163857004|ref|YP_001631302.1| two-component response regulatory protein [Bordetella petrii DSM
           12804]
 gi|163260732|emb|CAP43034.1| two-component response regulatory protein [Bordetella petrii]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L+IEDD  L H+++  L  + + V ++TD G+  +       +D ++LDL L    G
Sbjct: 1   MRVLVIEDDTTLGHALQEFLADQGYAVDWLTD-GDKVLGALAGQSYDLLLLDLNLPGRSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR      PV I++    +ED+V GL +GADDY++KPF+  EL AR+RA  RR 
Sbjct: 60  LDVLRQLRQDGNQVPVLIVTARDGLEDRVAGLDAGADDYVTKPFDLPELAARVRAFGRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ LI  G L+ +   + V   G R+ L+ +E  ++E+L  R    +TK   +N L 
Sbjct: 120 AGQAQPLIEAGTLTFDTVGREVRANGQRLSLSVRELSVLEMLMARAGRVVTKRQIVNSLS 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ++V++ +LRK+L    G    I+TV G GY+L
Sbjct: 180 AWDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 137/236 (58%), Gaps = 17/236 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L +DG   ++L      DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSR---GHAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171
           R+    G  +S  +T  DL+  LD  T EV +G+R I LT  E+ ++E+L       LT+
Sbjct: 120 RTSPVDGDGESAAMTFSDLT--LDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTR 177

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231


>gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 710

 Score =  128 bits (321), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 119/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++E+D+  A ++   L ++ F V         +EL +  E+D I+LD+ L D  G 
Sbjct: 1   MKLLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +L+G     D++ G ++GADDYI+KP+   EL+ARIRA++RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY+++EL          +   L+ +  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRQIFDRRTLLDRICS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + P  + +   I  LR+KL  A    + IET++G GY L+
Sbjct: 181 IDECPGEEAVTTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222



 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 14/119 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDI--P 58
           R+L+++DD AL   +E  L+   F V  T L +      +F+++ +A   DL L D+  P
Sbjct: 592 RLLIVDDDPALLSMLEAQLQLWGFQV--TTLADSS----QFWQYLEATTPDLLLLDVAMP 645

Query: 59  GFEVLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           GF  +   +V K        PV +LS  +  +   R L +GADDYI KP  + +L+ RI
Sbjct: 646 GFSGIELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 704



 Score = 42.7 bits (99), Expect = 0.043,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY---VTDLGEDGIELCKFYEFDAIILDLGL--TDI 57
           +LLI+DD  L   ++    + N++++   VTDL      L ++   DAIILDL    T  
Sbjct: 468 VLLIDDDTDLIERMQA--NASNWSIHLETVTDLTLARQRL-QYLTPDAIILDLIFPNTTE 524

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  L+    + PV +L+G+  +  +V   + GA+ ++ KP    E+   +  ++ 
Sbjct: 525 SGLTLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLH 584

Query: 118 R-SRGHAQSLIVTGD 131
           R    +A+ LIV  D
Sbjct: 585 RIDTINARLLIVDDD 599


>gi|313113436|ref|ZP_07799025.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624163|gb|EFQ07529.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 263

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   I   L+   + V     GE  +E      +D ++LDL L  + G 
Sbjct: 39  MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGM 98

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   + T V ILS  S I DKV GL +GA+DY+SKPF+  EL AR+R++ RR  
Sbjct: 99  QVLRTLRRHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 158

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G LS N  ++   V G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 159 IQQDVCLCCGRLSFNTRSRVAAVDGQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 218

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  +     I V I  LRKKL  AA G + I    G GY
Sbjct: 219 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 256


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + ++       D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240


>gi|240139159|ref|YP_002963634.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240009131|gb|ACS40357.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  + + L      V       D         F A++LDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRVGLSLCGATVDCVATCADADAALGTSPFAAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRRRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++L + TV V G +I ++ +E+ ++  L  R +   +K    + LY 
Sbjct: 121 GRATASLEHGGIRLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEIESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 220


>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ++  ++ + +K E  +V     G + +E+      D +ILD+ +    GFEV
Sbjct: 5   ILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
             A+R   IS P+ ILS    + DK  G + GADDYI+KPF   ELV R  + +R     
Sbjct: 65  CSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRSPQ 124

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G   S+I  GDLS+++D + V V   R+ LT KEY ++ L++ R N   T++
Sbjct: 125 EAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQ 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++         ++ VFI KLR+K+        +I T WG GY
Sbjct: 185 QILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGY 231


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF+
Sbjct: 4   RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  G
Sbjct: 64  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           HA          ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++
Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N 
Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLE-LDPESVHIDSIRGVGYKLVVNP 235


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +DD  +A  I++ L +E + V +   G + +EL        +ILD+ + ++ G 
Sbjct: 4   IQILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+RA+R A+   P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR+++++RRS 
Sbjct: 64  EVVRAVR-AEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSI 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I    L ++  + TV V+   I+LT  E+ ++ LL+       + E
Sbjct: 123 YLNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++  R       + V I KLR KL +  GG   I+TVWG GY
Sbjct: 183 AIFEAVWKDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGY 229


>gi|188583346|ref|YP_001926791.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346844|gb|ACB82256.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F AI+LDL L D  G 
Sbjct: 1   MRILVVEDDTILSDGLRAGLGLGGATVDCVATCADAEAALATSAFSAIVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRRRNDRTPVVLLTARDAVTDRIAGLDDGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G + ++  +  V V G  + ++ +E  ++  L  R N   +K      LY 
Sbjct: 121 GRAAALLEHGGIRLDPGSLAVTVDGVPVAVSRREVMVLAALMERPNVLRSKVELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++E E   ++V +  LR K+     GK+ IETV G GY +R
Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMR 217


>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 125/220 (56%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +   +E  L+ E + +   + G  G EL + + FD I+LD  L  I G 
Sbjct: 1   MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ +A+R+    TP+  L+   ++++ + GL++GA+DYI KPF+ EELV R++   R   
Sbjct: 61  DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFRNKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+++V+L    V      I+LT +E++++  L  +K    T+   L  ++D
Sbjct: 121 --TDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E +  +IDVF+  +RKKL N    ++YI+T+ G GY+
Sbjct: 179 INFEYDTGVIDVFMNAIRKKL-NLKIEEDYIKTIRGIGYI 217


>gi|62179752|ref|YP_216169.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|73621399|sp|Q57QC3|PHOP_SALCH RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|62127385|gb|AAX65088.1| response regulator in two-component regulatory system with PhoQ,
           transcribes genes expressed under low Mg+ concentration
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|219523861|gb|ACL14893.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|322714222|gb|EFZ05793.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 224

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L H +++ L+     V  T+   +       +  D  I+DLGL D  G 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGLPDEDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R + IS PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++RR+ 
Sbjct: 62  SLIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  LY 
Sbjct: 122 GLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 182 DAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|307129447|ref|YP_003881463.1| Two-component response regulator [Dickeya dadantii 3937]
 gi|306526976|gb|ADM96906.1| Two-component response regulator [Dickeya dadantii 3937]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED    A  I   LK  +F V V   G DG+      ++D  ILD+ L  + G+
Sbjct: 1   MRLLLVEDQTMAADYISKGLKENDFVVDVAHDGVDGLHYLLTNDYDLAILDVMLPGMSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R A   TPV  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  KILELARQAGKPTPVMFLTARDEVEDRVRGLELGAEDYLIKPFSFSELLARVRVIMRRQA 120

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H     +S++   +L ++     V   G RI LT KE+ ++ LL  R    L++ +   
Sbjct: 121 VHMPAVEESVLQISNLQLDFLKHRVSRGGKRIELTQKEFLLLSLLMRRSGEVLSRTVLAE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   +PE  +IDV I +LR K+ +    K  + T+ G GYVL
Sbjct: 181 QVWDMNFDPETNVIDVAIRRLRSKIDDDYEVK-LLHTIRGAGYVL 224


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+ +       G  +     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 239


>gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ L +++   +      V       +  +      +D  +LDL L D  G 
Sbjct: 11  MRILLIEDDEVLGNAVADHVAEAGHTVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R    STPV IL+ +  I +++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 71  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G   V+L A+T+  +G  + LT +E+ ++E    R N  L+K      L+ 
Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V++ +LR+KL ++      IETV G GY L
Sbjct: 191 FEAEIESNAIEVYVSRLRRKLDHSV-----IETVRGLGYRL 226


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220


>gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 509

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DD+ +   +  +L  +N+ V V   GE   EL + +++D I+LD+ L  + G 
Sbjct: 1   MRILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R LR  K    V +L+   +  DK++GL  GADDY+ KPFN +EL AR+ A+ RR  
Sbjct: 61  SFCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V G L ++ +   V  Q H + L+ KEY ++EL    +    +    ++ L+ 
Sbjct: 121 SSPYPTLVCGHLHLDPNLHEVNYQEHLLQLSRKEYLLVELFLRNQKRIYSCRDIIDELWA 180

Query: 181 GRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              EP  +  +   I  +R+ L  A G  N++ETV+G+GY
Sbjct: 181 FDAEPPNEWTVRSHITNIRRNLK-AVGADNFLETVYGQGY 219



 Score = 38.5 bits (88), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGF 60
           ++L ++DD  +  +++ +L+     +      +   E   + + + +ILD+ + +   G 
Sbjct: 376 KVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMPSGTEGL 435

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ RA+         P+  LS  + +E   +    GADDY++KP   +EL+ RI   ++R
Sbjct: 436 DLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPIVPKELLIRISNGLQR 495


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G+D +++   YE D +ILD+ +    G EV
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRNGLEV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 82  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S       +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 141 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 244


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + ++       D ++LD+ +  + G  
Sbjct: 34  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 94  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 153

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 154 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 213

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 214 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 260


>gi|330820559|ref|YP_004349421.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia gladioli BSR3]
 gi|327372554|gb|AEA63909.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia gladioli BSR3]
          Length = 231

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      Y++D ++LD+ L  I GF
Sbjct: 1   MKVLIVEDEPKVVDYLKSGLSEEGWVVDTATDGEDGAWKAVEYDYDVVVLDVMLPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-DTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L ++     G R+ LT +E+Q++ +L+ R+   L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLISRRATRNGIRLDLTAQEFQLLGVLARRRGEVLSKTTITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++  I +LR KL      K  + T+ G GYVL
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFSDK-LLHTIRGMGYVL 219


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 136/236 (57%), Gaps = 17/236 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S +FN Y  +L  DG+E  +       DA++LD+ +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRG---HAQSLIVT-GDLSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTK 171
           R++     A+S+ +   DL+  LD  T EV +G R I LT  E+ ++E+L       LT+
Sbjct: 118 RTKPDDEDAESVAMKFSDLT--LDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTR 175

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 176 SRILEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 229


>gi|294665023|ref|ZP_06730331.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605214|gb|EFF48557.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLVLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++++A   +  L+  +F V V + GE G       +FD IILDL L  + GFE
Sbjct: 4   KILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQVRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 QEIWDMESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRFK 229


>gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
 gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 88/223 (39%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA  I   LK E + V V   GE G EL     +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIMLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   ++ PV +L+   +++DKV GL  GADDY++KPF   EL+AR RA++RR  
Sbjct: 61  SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++     V   G+ I LT KEY ++E L   KN  LT+   + H++D
Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   I+D  I  LR K+         I TV G GY+L +
Sbjct: 181 ISYDPMTNIVDAHIRSLRAKMDRDF-SPALITTVRGAGYMLED 222


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR    
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++
Sbjct: 120 EEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 180 GADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGY 219


>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   + + +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +  TPV  L+    + D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  EVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV I +LR K+ +    +  I T  G GYVL
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPF-PRKLIHTRRGMGYVL 219


>gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L +   +DAI+LD+GL  + G 
Sbjct: 1   MRLLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL + R A   TPV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V+G  + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDC-----DVIQTVRGLGYLL 216


>gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD+A+A  +   L  E ++V V   G D +      EF  +ILDLGL ++ G E
Sbjct: 4   RVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+    V +L+  +   D V GL +GADDY+ KPF   EL+AR RA++RRS  
Sbjct: 64  VCREVRAARPEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLRRSAP 123

Query: 122 HAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  V     + LDAK   V V G  + L  KE++++  L  R    L++E  L  ++
Sbjct: 124 APDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDILADVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG--GKNYIETVWGRGY 219
              D    K +D+ I  LR+K+ +  G  G   I TV G G+
Sbjct: 184 GDSDLRGSKTLDMHISWLRRKIGDDTGPHGPRRIVTVRGVGF 225


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++   +   LK E F+V     GE+G+      ++D  ILD+ L  + G+E+
Sbjct: 8   ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR A+ ++PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR R  
Sbjct: 68  CRRLR-ARTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRLE 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G +++N    + +     I LT +E++++  L        T+E  L   +
Sbjct: 127 DSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREAW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D     E K +D  I +LR KLS A   +N IETV G GY
Sbjct: 187 DWEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGY 226


>gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRILL+ED+  +A  I   LK   + V   DL  DG+E  ++    E+D IILD+ L  I
Sbjct: 1   MRILLVEDEPGIAQFINQGLKETGYGV---DLAIDGLEGKRYIESVEYDIIILDIMLPKI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R  K  TPV +L+   SIED+V+GL  GADDY+ KPF   EL+ARIRA+ R
Sbjct: 58  DGLTLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      +++   DL +NL  + V+     I L+  E++++E L    N  LT+      
Sbjct: 118 RPPLQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D        ++DV+I  LR+K+      +  + T+ G GY L+    +
Sbjct: 178 VWDLDFYTNSNVVDVYIGYLRRKIDRGFDNQ-LLHTIRGVGYCLKPEGNE 226


>gi|157370255|ref|YP_001478244.1| DNA-binding transcriptional regulator PhoP [Serratia proteamaculans
           568]
 gi|157322019|gb|ABV41116.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +IV     ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVIVLPPFQIDLSRRELSVNEQQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKV-QAEYPQEVITTVRGQGY 218


>gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
 gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A ++   L      V     G  G+   +   +D  ++D  +  + G 
Sbjct: 1   MRILVVEDDAEAATAMVRGLSEAGHEVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R     TPV  LS +  +ED+V GL++G DDY+ KP+   ELVAR+ A+ RR  
Sbjct: 61  AMVETIRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV   G  I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      K  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DKAMLQTVRGAGYRL 221


>gi|293602289|ref|ZP_06684736.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292819318|gb|EFF78352.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M+IL+IED++ LA   EL+ +S   N Y+ D+  DG+   +L    ++D IILD+GL  +
Sbjct: 1   MKILVIEDEQKLA---ELLRRSLTDNSYIVDIAMDGVSGLQLAYETQYDLIILDIGLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEVL+ +R    + PV +L+  SS+ED+VRGL+ GADDY+ KPF   EL AR+ A+ R
Sbjct: 58  DGFEVLQRIR-KNDNVPVMMLTSRSSLEDRVRGLEQGADDYLIKPFALSELQARVLALRR 116

Query: 118 RSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+ G   ++     +   DL ++L  + V     RI LT KE+ ++  +  R+   L++ 
Sbjct: 117 RAAGSGDTMSGGNILRVADLELDLLRRRVARGNSRIDLTAKEFGLLTFMMRREGEVLSRL 176

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    ++D        +++V + +LR K+ +    K  + TV G GY +
Sbjct: 177 VLAEQVWDMNFNSNTNVVEVAVRRLRAKVDDPFDIK-LLHTVRGMGYTI 224


>gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 132/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +       +   G++ + L     +D +++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   ++TPV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQS  +T GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-ENGLPDPIKTIRGFGYVIQE 229


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + +      V   D   D  E   F      D  I+DLGL D 
Sbjct: 1   MRILVVEDNVLLRHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMSMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + +    I LT  EY +IE L   K   ++KE  +  
Sbjct: 118 RNSGLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQAE-APDVITTVRGQGY 218


>gi|187478610|ref|YP_786634.1| two-component response regulator [Bordetella avium 197N]
 gi|115423196|emb|CAJ49727.1| two-component response regulator [Bordetella avium 197N]
          Length = 223

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L H+++  L  + + V     G+          ++ ++LDL L    G 
Sbjct: 1   MRVLVIEDDTTLGHALQEFLSDQGYAVDWLTEGDKVQGALAGQPYELLLLDLNLPGQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV IL+    ++D+V GL +GADDY++KPF+  EL AR+RA+ RR  
Sbjct: 61  EVLRQLRQEGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ LI  G L  +   + V V G R+ L+ +E  ++E+L  R    +TK   +N L  
Sbjct: 121 GQAQPLIEVGPLVFDTVGREVRVNGQRLSLSVRELSVLEMLMARVGRVITKRQIVNSLSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V++ +LRK+L    G    I+TV G GY+L
Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYML 218


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   I + LK   + V     GE+ +      + D ++LD+ L  + GFE
Sbjct: 8   RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR       V +L+      DK+ GL+ GADDY+ KPFN  EL ARIRA++RR R 
Sbjct: 68  VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIRK 127

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     I +G   ++L    V  +G  + LT +E+ ++ L         +++  LN ++
Sbjct: 128 AGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + K +DV I +LR+K+ +  G   YIETVWG GY  RE 
Sbjct: 188 GADYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYRWREK 232


>gi|258544229|ref|ZP_05704463.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826]
 gi|258520543|gb|EEV89402.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826]
          Length = 225

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ LA S+  +L+           G +   L     +DA +LDLGL  + G 
Sbjct: 1   MRILIVEDDRELAQSLANVLQEAGMIAETAHDGNEAAFLGSTETYDAAVLDLGLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    + PV IL+G S   DK+ G  +GADDY++KPF  EE+V R+RA++RRSR
Sbjct: 61  SLLTHWREQGQTYPVLILTGRSRWSDKLAGFNAGADDYLTKPFLHEEVVLRLRALLRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G LS +       + G R+ LT +E +++  L  +  T +++   L H+Y 
Sbjct: 121 GHADTTLHVGSLSYDTLQARFHLDGRRLTLTAQEERILAYLMHQPGTVVSRGEILEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229
              +P+   +DV I ++R+KL     G   + T+ GRG++L  E  KD+T
Sbjct: 181 RDSDPDSNTLDVLISRIRRKL-----GVPLLHTIRGRGFMLAAETPKDDT 225


>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +++IED+  +A S+ + L  E   V V   G   +++ +    D +ILDL L DI G 
Sbjct: 17  LHVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGM 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      P+ IL+    ++++V+GLQ GADDYI KPF+ +EL+AR+ AI RR+ 
Sbjct: 77  VVCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRA- 135

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++ + V     LS+NL+ + V + G  I LT  E+ ++E          T++  L+ +
Sbjct: 136 GISRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +      +  I++V I  LR+K+ +    +  I TV+G GY LR +  DET
Sbjct: 196 WGFTYVGDSNIVEVHISNLREKIGDHE--RKLIRTVYGVGYTLRPD--DET 242


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 4   VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 64  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+    G  + +ET+ G GY LR++ 
Sbjct: 184 AAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRKDG 227


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  ++  +++ LK + F+V   D G+D + L   Y+ DA ILD+ +  + GF
Sbjct: 7   VKVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 67  TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 126

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   SLI   D++++ D   V   G  + L+  E++++  L +     L+K   L+H
Sbjct: 127 SEDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDH 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++ ++  LR+K+       + I+TV G GYVLR+
Sbjct: 187 VWNYDFGGDGNVVESYVSYLRRKIDKEE--PHLIQTVRGVGYVLRK 230


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVR-KTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A+       S +  GDL+++ DA  V      I LT +E++++  L+      +T+E  
Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYLR 229


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD AL   +   ++ + F V       +G +       D ++LD+GL D  GF+
Sbjct: 3   RLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +RV    TP+  L+        V GL  G DDYI+KPF   EL++R+RA++RRS  
Sbjct: 63  LCRQIRVEN-GTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
                +V+G ++++ +   V   G  I LT  EY+++ LL   +  TLT+E  L+ L+D 
Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G D  +   + V+I +LR K+ +      +I TV G GY  +     E C
Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYRWKAEEGGEAC 231


>gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica]
          Length = 222

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L H ++  L S  F V   D+  DGI   +L +   +  +ILD+ L  +
Sbjct: 1   MRLLLVEDHPELLHWLQKALSSTGFAV---DVASDGIVADQLLQTENYALLILDVSLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+  + + D+V+GL SGADDY++KPF+ +EL ARIRA++R
Sbjct: 58  DGLSLLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  Q ++  G L V  D     + G  + LT +E  ++  L  R+   ++K+     
Sbjct: 118 RSAGIPQEILTFGSL-VYQDEGYFTLNGEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   DE   + I++++ ++RKKLS +  G   I T+ G GY L
Sbjct: 177 VFALSDEANPQSIELYVHRVRKKLSGSGVG---ISTLRGLGYRL 217


>gi|218232438|ref|YP_002369894.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228961333|ref|ZP_04122949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229130349|ref|ZP_04259307.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|218160395|gb|ACK60387.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228653048|gb|EEL08928.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228798341|gb|EEM45338.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 220

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E + +       +G+ +    ++D IILD     I G E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  + Q
Sbjct: 61  QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119

Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 NIVVNPNVVDLYIGYVRKKLK-CEKKERYIQTIHGRGYSMIE 220


>gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 230

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V   + G DG  L     +D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR A  S P   L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++R  R
Sbjct: 61  KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLR--R 118

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+   L+      DL ++L  +     G R+ LT KE+ ++E L   K   L + +  + 
Sbjct: 119 GNPSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D     +  +IDV I +LR K+ +    K  I T+ G GYVL + A
Sbjct: 179 IWDINFNSDTNVIDVAIRRLRAKMDDDYDPK-LISTIRGVGYVLEDPA 225


>gi|152998427|ref|YP_001343262.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839351|gb|ABR73327.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 222

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+++LA SI +  K+    +      E       F +FD +ILD+ L    GF
Sbjct: 1   MRMLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L++LR      PV +L+  + ++D+V  L  GADDY++KPF+  EL AR RA+ RR R
Sbjct: 61  QLLQSLRSKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + I  G+L  +L A + +V G  + L  +E Q++EL     +  LTK+   N LY 
Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +      I+  + +LRK+L    G    I+T+ G GY+   N
Sbjct: 181 YDEAYTPNAIEQTLTRLRKQLD---GSTLIIKTIRGLGYLAHVN 221


>gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str.
           870]
 gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str.
           513]
 gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str.
           686]
 gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis
           M163/99/10]
 gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis
           B2/94]
 gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1]
 gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1]
 gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13]
 gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str.
           292]
 gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis
           M292/94/1]
 gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33]
 gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1]
 gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94]
 gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str.
           C68]
 gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      +  + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  ++  +++ LK + F+V   D G+D + L   Y+ DA ILD+ +  + GF
Sbjct: 9   VKVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 69  TLLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVS 128

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   SLI   D++++ D   V   G  + L+  E++++  L +     L+K   L+H
Sbjct: 129 SEDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++ ++  LR+K+       + I+TV G GYVLR+
Sbjct: 189 VWNYDFGGDGNVVESYVSYLRRKIDKEE--PHLIQTVRGVGYVLRK 232


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL+  +  +L  E F   V D G D + +      D ++LD+ L  + G E
Sbjct: 3   KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++  G + +++D   V V G  I +  KE++++E+L       +T+   +  
Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV I +LR K+   +    Y+ TV G GY
Sbjct: 182 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGY 223


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++A+   + + L+ E F+V     G+  +        D ++LD+ L DI GF
Sbjct: 18  IRVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR +    P   L+   + EDKV GL  G DDY++KPF   EL+AR+RAI+RR+ 
Sbjct: 78  AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   DL ++ + + V   G  + LT  EY+++  L       LT+   L+H+
Sbjct: 138 AADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + ++++ ++  LR+K+ +       I TV G GYVLR
Sbjct: 198 WGHDFGGDARVLETYVSYLRRKIDDVP--PPLIHTVRGVGYVLR 239


>gi|21954779|ref|NP_665764.1| ANL23 [Synechococcus elongatus PCC 7942]
 gi|81230366|ref|YP_398748.1| response regulator receiver domain-containing protein
           [Synechococcus elongatus PCC 7942]
 gi|21913201|gb|AAM81151.1|AF441790_22 ANL23 [Synechococcus elongatus PCC 7942]
 gi|81170338|gb|ABB58676.1| response regulator receiver domain protein (CheY-like)
           [Synechococcus elongatus PCC 7942]
          Length = 224

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 2/212 (0%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
           H++   L  E ++V     G++  E+ + Y + A++LD  +    G E+ + LR A+ ST
Sbjct: 14  HALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGLEICQRLRQAQDST 73

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           PV +L+    ++D V+GL +GADDY+ KPF   EL+AR+RA++RRS      L+  G L 
Sbjct: 74  PVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVGRLR 133

Query: 134 VNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           ++    TV+V  +  + LT +E+Q++E L       L+++  L+ L+    EP   ++  
Sbjct: 134 LDPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPMDAEPSSNVVAA 193

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  LR+KL+        IETV+G GY LR +
Sbjct: 194 QVRLLRRKLATYQADL-LIETVYGFGYRLRPS 224


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G 
Sbjct: 17  LRVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS 
Sbjct: 77  EVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ 
Sbjct: 137 ASEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPAA 242


>gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 231

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL+IED+  +A  ++L L+ E + V ++  G +G++  C  Y FD +ILD+ L  + G 
Sbjct: 5   KILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDY-FDLLILDVMLPSLNGV 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR  K   PV +L+    + DK+ GL  GADDY++KPF  EEL+ARIR I +R  
Sbjct: 64  EVLRRLR-QKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMD 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S+    S++    +++++D  TV  +   I LT +E+++++ +   KN  +T+EM 
Sbjct: 123 NYKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      +  ++DV+I  LR K+ +  G K  I T+ G GY +++
Sbjct: 183 LAKVWGYEYMGDTNVVDVYIRYLRSKIDDQFGIK-LIHTIRGVGYQIKD 230


>gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 226

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  +++ L    + V     GE+   L     +D ++LDLGL  I G 
Sbjct: 1   MRVLLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G L ++  A    V G  + LT  EY+++  + + +   +++   + HLYD
Sbjct: 121 GIASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKK+     G + IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKV-----GSDRIETVRGLGYRL 216


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 238


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  128 bits (321), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARAIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 AAPELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  R   + ++++V + +LR K+         I TV G GY
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 44  LRLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGL 103

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS 
Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++V GDL+++ ++  V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 164 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 223

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  +++++I  LR+K+   AG    I T  G GY+L
Sbjct: 224 VWSYDFGGQANVVEIYISYLRRKID--AGRAPMIHTRRGAGYLL 265


>gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440]
          Length = 225

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFAPK-LIHTARGMGYMM 221


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 132/233 (56%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  +L  DG+E          DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSRGH--AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++    A+S+ +   DL+++   + V     RI LT  E+ ++E+L       LT+   
Sbjct: 120 RTKPEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 230


>gi|300783660|ref|YP_003763951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793174|gb|ADJ43549.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 237

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  +  + + E +       G+  +     +  D ++LDL L D+ GF
Sbjct: 7   VRLLVVDDEPHIADLVATVARYEGWQAVTAGTGQTALSRAAEFGPDIVVLDLMLPDLDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    + PV  L+   +  D++ GL  G DDY+ KPF+ EEL+AR+RA++RRS 
Sbjct: 67  TVLDRLRAGGNAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRSA 126

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEM 173
           G A       +++  GDL+++ D + V  +G R+  LT  EY+++  L  R    LTK  
Sbjct: 127 GLAHQPEARGAVLRVGDLTLDEDTREVR-RGERLAELTPTEYELLRYLMRRSPAVLTKAQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++        ++++ I  LR+K+ +   G+  I TV G GYV+R+
Sbjct: 186 ILDHVWEYDFGGRSNVVELVISHLRRKV-DTGDGEPLIHTVRGVGYVVRQ 234


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224


>gi|167761217|ref|ZP_02433344.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704]
 gi|167660883|gb|EDS05013.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I + LK E +  +V    E+ + L    + D IILDLGL D  G EV
Sbjct: 7   LLIVEDDKYIINFISMTLKKEEYAFFVAKSVEEAVSLFYANQPDLIILDLGLPDGDGMEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++++R      P+ ++S      +K++ L +GADDY++KPF   EL+ARIRA +R++   
Sbjct: 67  IKSVREVS-DIPIIVVSARQEEGEKIQALDAGADDYVTKPFYMGELMARIRAGLRKTGTA 125

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q  I+T    G L+V+ + + V V+G  +HLT  EY+++ LL   +   LT    +  +
Sbjct: 126 RQEEIMTVFSTGSLTVDYEKRKVLVEGEEVHLTPIEYKILLLLIANRGKVLTHNYIIREI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++ +   + VF+  LR+K+        Y+ T  G GY  RE 
Sbjct: 186 WGYAEDIDAGNLRVFMATLRRKIEKDPASPEYVLTEIGVGYRFREK 231


>gi|77465102|ref|YP_354605.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389520|gb|ABA80704.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 219

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  +I   + +E     ++T + ED +       +D ++LDL L D  G
Sbjct: 1   MRILLVEDDPGLGGAIRDQISAEGHAADWMTGV-EDALASVATTAYDLVLLDLNLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR  K + PV IL+    + +++ GL +GADDY+ KPF+  EL ARI A+ RR 
Sbjct: 60  LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+    +  G L V++  + ++     + L+ +E+ + E L  R  + ++K      LY
Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   I+V++ +LRKKL     G++ IET  G GY L
Sbjct: 180 AFDAEVESNTIEVYVSRLRKKL-----GRDRIETRRGMGYRL 216


>gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 130/220 (59%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +++  +  L+ E + VY +  G   +EL    EF+ IILDL L DI G E
Sbjct: 3   KILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDIQGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K    + +++  S++ED++ GL +GAD+Y+ KPF+  ELVAR+ ++ RR   
Sbjct: 63  ICKIIR-NKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  S++    G+L ++ D++ V+V+G  + LT  E+ ++  L++ K   LT+E  ++ ++
Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + +DV I  +RKK+   +    YI TV   GY
Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGY 221


>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA ++   L    + V   D GED         +  ++LD+ L  + G 
Sbjct: 1   MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K   PV IL+   +++D+V GL  GADDY++KPF+  E  AR+RA++RR +
Sbjct: 61  AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L  +L+A  +      + L+ +E  + E+L  R+   +TKE  ++ L+ 
Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             D+     I+V++ ++RKKL         I TV G GY+L ++ + E  E
Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPY---NITIRTVRGMGYLLEKSGEKERSE 228


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  + + L  E ++V     G  G+   +   + A++LDL L  + G E
Sbjct: 6   RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      ++  G LS++  A+   V G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++  R +     ++  I +LR K+         I TVWGRGY L E+A
Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235


>gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CMR15]
          Length = 224

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 1   MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+R
Sbjct: 58  DGWQVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEPK-LIHTLRGMGYVLDTVAR 224


>gi|240137869|ref|YP_002962341.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240007838|gb|ACS39064.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F AI+LDL L D  G 
Sbjct: 1   MRILVVEDDTILSDGLRAGLGLGGATVDCVATCADAETALATSAFSAIVLDLMLLDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRALRRRNDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +++  G + ++  +  V + G  + ++ +E  ++  L  R +   +K      LY 
Sbjct: 121 GRAAAILEHGGIRLDPGSLAVTIDGLPVAVSRREVMVLAALMERPDVLRSKSELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHAIETVRGLGYRMRAPA 220


>gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
 gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
          Length = 273

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLSRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|332307619|ref|YP_004435470.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174948|gb|AEE24202.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED   L +S+ L L    ++V V   G  G+ +    +++ +ILDL L ++ G 
Sbjct: 1   MRILLIEDSATLRNSLSLGLDKLGYSVDVAADGTTGLSMALMGDYEIVILDLMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ALR   ++  V ILS  S  +DKV G+ SGADDY++KPF+ +EL AR+ +++RR  
Sbjct: 61  AILKALRKRNLNVRVLILSARSQTDDKVSGILSGADDYLTKPFSFDELSARLVSLMRRGP 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA   I   D  +NL  K++      I LT  EY++IE + L ++  +T E    +L 
Sbjct: 121 ATHANDRIEINDFVLNLQTKSLSYHQQDIELTPNEYKIIECMFLNRDRVVTSERLSEYLS 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D      I+  +   RKK  N  G    I++  G GY
Sbjct: 181 GNYDHTSKNAIEAHLSSARKKAKN-IGASLPIKSKRGFGY 219


>gi|296270269|ref|YP_003652901.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093056|gb|ADG89008.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 217

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G + +E   + ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDERVLADAIATGLRREAMAVDVAYDGAEALEKLAYIDYDVIVLDRDLPKVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + L   +  + + +L+    ++D+V GLQ GADDY+ KPF   ELVAR+RA+ RRS 
Sbjct: 61  EVAKKLANERCPSRILMLTAAGDVDDRVEGLQLGADDYLPKPFAFAELVARVRALARRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   +TV   G  I LT KE+ ++E L       +++E  L+  +D
Sbjct: 121 PPLPPVLERAGIRLDPAKRTVTRDGRPISLTRKEFAVLEELMRADGAVVSQEDLLDKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL    G    IETV G GY L
Sbjct: 181 EHIDPFTNVVRVTMMTLRKKL----GDPPIIETVPGVGYRL 217


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D + + + Y+ D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++   DL ++L  + V     R+ LT  E+ ++E+        LT+E
Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E
Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGE 244


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 220


>gi|94312516|ref|YP_585726.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356368|gb|ABF10457.1| putative two-component response regulator [Cupriavidus
           metallidurans CH34]
          Length = 224

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED+  LA  +   L+   F + +VTD G          E+DA++LDL L    G
Sbjct: 1   MRILLVEDEVELARWVTRALEQGGFVIEHVTD-GLKAEARLMAEEYDAVVLDLRLPGKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+A+R     TPV IL+   +++++VRGL  GADDY+ KPF   EL ARI A++RRS
Sbjct: 60  LAVLKAMRGRDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG A   +  G L  + +A++  + G  + LT +E  ++  L  R    LTK   L+ ++
Sbjct: 120 RGRAHPRLQCGTLVFDGEARSFTLAGAPLSLTPRESTLLGALLARSGQPLTKAQLLDKVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     I+V + +LRKKLS   G    I T+ G GY+L
Sbjct: 180 SLDADVSPDAIEVLVYRLRKKLS---GHGVTIVTLRGFGYLL 218


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 23  VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+     G   +ET+ G GY LR++ 
Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK ++  I   L  E + V V + G++G+ L    E D IILD+ + D+ G E
Sbjct: 4   KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + LR      P+ +++GM SI D+V GL++GADDY+ KPF  EELVAR++A++RR   
Sbjct: 64  VCKRLR-KDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      ++  DL V+L  +        I  +  E+ ++          LT+E+ ++ ++
Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  +++V++  LR KL  A      I TV G GYVLRE
Sbjct: 183 GFDFRGESNVLEVYVGYLRSKL-EAQNEPRLIHTVRGAGYVLRE 225


>gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 219

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 231

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R + I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       +V G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG++ I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGY 227


>gi|325926597|ref|ZP_08187911.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542949|gb|EGD14398.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 233

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PVRIVTVRGAGYKLEE 220


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L SE + V     G +G++     ++  ++LD+ L  + GF+
Sbjct: 4   RILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV +L+      D++ GL+ GADDY+ KPFN  ELVAR+RAI RRS  
Sbjct: 64  VLRRIR-QNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GD+S++L A+TV      + LT  E+ ++E L  +    ++++   
Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                GR+     + IDV +  LRKKL  AAGG+  I++V G GY+
Sbjct: 183 RQAL-GREFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGYI 227


>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 230

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + +I  GDL+++    TVE     + LT KE+++++L    +N   TK      
Sbjct: 124 SATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 VWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ D ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S   +I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I+TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223


>gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 5   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 65  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 185 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 220


>gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 223

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L + +  + V +    + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++V I  LR K+     GK  I TV G GY+L
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYML 216


>gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct]
          Length = 264

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 134/229 (58%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 32  KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 92  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 151

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQ+  ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 152 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 211

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E   D
Sbjct: 212 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQEYPYD 259


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 224


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 133/236 (56%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            AQ+            I  GDL+++  A  V   G  I LT +E++++  L+   +  +T
Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +E  L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 REHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 237


>gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 218

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ L   +EL    EN  V   + GED + + + ++ D +ILD+ L DI G 
Sbjct: 1   MKILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIMLPDIDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    S  + +L+ +S  +DK+ G +SGADDYI KPF+ EEL AR +A+ RR +
Sbjct: 61  EVAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I  G+L +N+  + V  +   I+L+  E+ ++  L    +  ++KE  L+ ++ 
Sbjct: 120 GVLDEEINLGELKINILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    I++V+I  LRKK+S+     + I+TV G GY +
Sbjct: 180 FSYEGSENIVEVYINYLRKKISS-----DLIKTVRGIGYTI 215


>gi|295098097|emb|CBK87187.1| transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC
           9394]
          Length = 224

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V   + G     L +   +   ILD+G+    G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    + PV  L+  S++ D+V+GL +GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q     G+L  + D     ++   + LT +E  ++++L  R+   ++++   + ++ 
Sbjct: 121 GRTQERQRLGELEYD-DEGFFLLRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+   + ID++I +LRKKL+   G    I T+ G GYVL
Sbjct: 180 LNDDVSPESIDLYIHRLRKKLT---GSGVRIITLRGLGYVL 217


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 74  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 133

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 134 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+ +       G  +     IET  G GY++R
Sbjct: 194 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 244


>gi|169797190|ref|YP_001714983.1| transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213156019|ref|YP_002318064.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|293610351|ref|ZP_06692652.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|301347407|ref|ZP_07228148.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB056]
 gi|301513259|ref|ZP_07238496.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB058]
 gi|301595578|ref|ZP_07240586.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB059]
 gi|332850792|ref|ZP_08433024.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332866185|ref|ZP_08436891.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|169150117|emb|CAM88011.1| Transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213055179|gb|ACJ40081.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|292827583|gb|EFF85947.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|332730451|gb|EGJ61768.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332734759|gb|EGJ65854.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 227

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLSGKHQALSEEYDLIILDVMLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  + P+  LS    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++R
Sbjct: 58  DGWNIINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117

Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S I+T  DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 118 RGQQKEDSNIITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKIDSNFSPK-LIQNIRGMGYVL 221


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGY 223


>gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+LL++D++A+ H +  +L+ E F N+         +E C+ Y +D I+LD+ L D  GF
Sbjct: 5   RLLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVMLPDRSGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R      P+  L+  S+  DK+ G   GADDYI+KPFN  E+ ARI+A +RR +
Sbjct: 65  DICPLIR-ETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G      Q++   G + +N  A  V V G RI L  + YQ++  LS   N   +K     
Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H++      E   + V I KLR+K+ +      +I TV G GY
Sbjct: 184 HVWGEEGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGY 226


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  + + L  E ++V     G  G+   +   + A++LDL L  + G E
Sbjct: 6   RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      ++  G LS++  A+   V G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++  R +     ++  I +LR K+         I TVWGRGY L E+A
Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL+  +  +L  E F   V D G D + +      D ++LD+ L  + G E
Sbjct: 4   KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 64  VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++  G + +++D   V V G  I +  KE++++E+L       +T+   +  
Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV I +LR K+   +    Y+ TV G GY
Sbjct: 183 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGY 224


>gi|73541789|ref|YP_296309.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72119202|gb|AAZ61465.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  LA+S+   +    F V     G     L    ++  +ILDLGL  + G 
Sbjct: 1   MRILLAEDNLMLANSLTQAMTQAGFTVDCMHDGRSADHLLATQDYALLILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF+  EL AR RA++RRS 
Sbjct: 61  EVLRRLRQRRNRMPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + +  G L  +  ++   + G  + LT +E  ++E+L LR    + K      ++ 
Sbjct: 121 GHESTQLSCGPLHYDSVSRAFTIDGELLQLTRRERSVLEVLLLRNGKAVNKSALSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I+++I +LRKKL    G    I T+ G GY++
Sbjct: 181 IDESVNPDAIEIYIHRLRKKLD---GSGVAIVTLRGLGYLI 218


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 17  VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 77  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 137 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+     G   +ET+ G GY LR++ 
Sbjct: 197 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 240


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +RIL+++DD+A+  S+    +S +FN Y  DL EDG++          DA++LD+ +  +
Sbjct: 3   VRILVVDDDRAVRESLR---RSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 60  DGLEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLR 119

Query: 118 RSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+     +   T   GDL+++   + V      I LT  E+ ++E+L       LT+   
Sbjct: 120 RTTIDESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRI 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 180 LEEVW-GFDFPTSGNALEVYVGYLRRK-TEAEGELRLIHTVRGVGYVLRETPP 230


>gi|166713358|ref|ZP_02244565.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 233

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGKASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGRVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E FNV     GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ V+   + V + G  + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  ++L L+ E +       G  G+E  K   +D ++LD+ L ++ G EV
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    STPV +L+  +SI DKV GL  GA+DY++KPF  EEL+AR+RA +R  +  
Sbjct: 64  LRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQSG 123

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    ++   D  VN   + V      + LT KE+ ++      K   L +E  LN ++
Sbjct: 124 TEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  I+DV++  LRKKL  +      + T+ G GY L+E
Sbjct: 184 GFDYYGDTNIVDVYVRHLRKKLDLS----EVLVTLRGVGYRLKE 223


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D +E    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR   ++ PV +L+   ++ D+V GL +GADDY+ KPF  +EL+ARIRA++RRS  
Sbjct: 72  AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A +          +   DL +NL  + V   G R+ LT  E+ ++E+        LT+E
Sbjct: 132 AAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 192 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240


>gi|121534557|ref|ZP_01666379.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306809|gb|EAX47729.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 223

 Score =  127 bits (320), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL EDD  L   I+ ML+ E   V +VT+ G   +E   +  +D +ILD  +  + G
Sbjct: 1   MRILLAEDDSRLGKLIKHMLEKEKMQVDWVTE-GNAALEYALYSPYDVVILDWMMPGLSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV   LR  +    + +L+   +++DKV GL +GADDY+ KPF   EL+ARIRA+ RRS
Sbjct: 60  LEVCDRLRKRRYQGAILMLTARDAVDDKVLGLDTGADDYLVKPFEFSELMARIRALSRRS 119

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  IV  GDL +N   + V      I LTG+E+QM++LL   +   + +E+ L+ +
Sbjct: 120 AVVLKEDIVQVGDLVLNRTTRVVRRGDREIQLTGREFQMLDLLVQNRGKVVPREVILDRV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E     +D ++  LRKK+ +  G +  I  + G GY L E
Sbjct: 180 WGLESEVSSNNLDAYVRLLRKKI-DFPGEEKLIHNIRGIGYKLGE 223


>gi|254558966|ref|YP_003066061.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266244|emb|CAX22002.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F A++LDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +    + ++    TV + G  + ++ +E+ ++  L  R N   +K      LY 
Sbjct: 121 GRASACLEHAGIRLDPAELTVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEVESNTVEVHVHNLRAKI-----GKHAIETVRGLGYRMRATA 220


>gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   I + L+  +F V     G++ +   K +    ++LD+ L  + G E
Sbjct: 6   RILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPGMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LRV      V +L+      DKV GL+ GADDY+ KPFN  ELVARIRA++RR   
Sbjct: 66  VCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQT 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R     +I  G   ++  A+ +      + LT +EY ++++     N  L+++  LN  
Sbjct: 126 DRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      + K +DV I +LR+K+ +      YIETVWG GY  RE  K
Sbjct: 186 WGEDFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYRWREEGK 233


>gi|257790147|ref|YP_003180753.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489597|ref|ZP_07948102.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474044|gb|ACV54364.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911329|gb|EFV32933.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 237

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA ++  +L    +   V   G  G+   +  ++D IILD+ L  + GF
Sbjct: 1   MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   IS PV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 61  AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K+M +  ++ 
Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231
                E   ++ ++  LRKK+    G    IET+   GY  + + A D+  E
Sbjct: 181 VESSAEDNNVEAYVSFLRKKM-KFLGSTARIETLRRAGYRFVADAAPDDASE 231


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +   LK E + V      E+ +++ +  E D  I+D+ L  + GFE+
Sbjct: 6   ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGMDGFEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +    TPV  LS  S   DKV GL+ GADDYI+KPF+  E++ARIRA+ RR +
Sbjct: 66  VRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRRIQ 125

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ+       I+  DL ++ +   V V+   ++LT  E++++  L+  +    ++++ 
Sbjct: 126 QSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+   A    YI TV G+GY  R+  K++
Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKFRDPGKED 239


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I+  +K+  +N Y    G++ +E+ +  + D +ILD+ + D+ G EV
Sbjct: 4   ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDGKEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R  K STP+  LS      DK+ GL  GADDY++KPFN  EL+AR++A++RRS   
Sbjct: 64  LRKIR-EKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTIF 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  +   I+   L ++ ++  V      I LT  EY++I      +N   TK     
Sbjct: 123 NNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + KII V+I KLR+K+ +     N+I+T+ G GY+ +
Sbjct: 183 EVWGQCYLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIFQ 228


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ LA  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   IKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R +    PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRIRRSS-DIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+   +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV++  LR K+ +    K  I TV G GYV+++
Sbjct: 181 VCGYDYIGETNVIDVYVRYLRTKIDDVFKVKT-ITTVRGVGYVIKD 225


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E FNV     GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ V+   + V + G  + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  NF V     G D + + +  +FD ++LDL L  + G +
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGEQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR+ +  TPV +L+   +  DKV GL+ GADDYI KPF+  E++ARI A++RR   
Sbjct: 63  VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +   A+++  TG  +++     V      + LT KE++++E L   +N  L+
Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  L  ++      + +++D+ I  LR+K+        Y+ TV G GY
Sbjct: 183 RDQLLQGVWGFDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGY 231


>gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
 gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC30]
 gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus
           EC10]
          Length = 228

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 137/233 (58%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL +ED+ ++A ++  +LK ++++V +   GE G++      +D ++LD+ L  I G 
Sbjct: 1   MRILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   I TP+ +L+  S ++DKV GL +GADDY++KPF  +EL+ARIR++ RR  
Sbjct: 61  TLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  +  G++ +  +   +    +++ L+ KE +++EL   R    L+KE  +N ++
Sbjct: 121 LDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILSKETIINKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENAKDETC 230
               + E   +++++  LRKKL+   A  G   I T+   GY+L+  +K+  C
Sbjct: 181 GFDPDVEENRVEIYVSLLRKKLTLLEADIG---IRTIRNAGYILQ--SKEPLC 228


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  ++  ++L L+ E + V     G  G E+    E++ ++LD+ L ++ G E
Sbjct: 4   RVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           VLR LR A    PV +L+   ++ DKV G + GA+DYI+KPF  EEL+AR+R I+R    
Sbjct: 64  VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI  GDL++ L  + V  +   I LT +E++++  L   KN   ++E  L+
Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E  ++DV+I  LR+KL      K  I TV G GY+++E
Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKLDKGYRHK-LIHTVRGVGYMIKE 229


>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+ LA  +EL L  E + +   D G  G+E+ +  E D ++LD+ +  I G 
Sbjct: 2   VKILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  ++R  
Sbjct: 62  EVLRRIRKTS-DLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRT 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I  G LS++     V      I LT +E+ ++++L   KN  LT+++ +  
Sbjct: 121 VIEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYIGETNVIDVYIRFLRTKIDDAFKTK-IITTVRGVGYVIKD 225


>gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33]
 gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51]
 gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51]
 gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395]
 gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
           HI4320]
 gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
 gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 232

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLD-ASIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G+   ++    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQKQTDGNTSPILQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|170747666|ref|YP_001753926.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654188|gb|ACB23243.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 247

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD   A  +   L+    +V     G DG    +   + AIILD  L    G  
Sbjct: 25  KLLLIEDDSETAADVRDDLRGRGHDVVWAATGPDGARAARDGGWGAIILDRMLPGQDGLG 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR     TP  +LS +  +++++RGL++G DDY++KPF   EL ARI A++RR   
Sbjct: 85  VLQDLRRDGDRTPALVLSALGDVDERIRGLRAGGDDYLAKPFALGELAARIEALLRRPVD 144

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G L+++L A T       + L  +E +++E L  R    +T+ M    +++ 
Sbjct: 145 SRETVLHVGSLAIDLIAGTGRRGARDLELLPRELKLLEYLMRRPGQIVTRAMLFEEVWNY 204

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           R  P+  +IDV + +LR+KL  AAG    I +V G G+ L  +A
Sbjct: 205 RFTPKSNLIDVHVGRLRRKL-EAAGEPPLIHSVRGTGFTLSPDA 247


>gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P  
Sbjct: 1   MRILLVEDDRMIADGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKR 57

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  DGIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      
Sbjct: 118 RQSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 178 MYGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 220


>gi|92118758|ref|YP_578487.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801652|gb|ABE64027.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD     ++   LK     +     G DG    K  E    +LD+GL ++ GF
Sbjct: 1   MRLLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAEHAIALLDVGLPEMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A+R    + P+ I++    +ED V GL  GADDYI KPF    L+ARIRAIVRR  
Sbjct: 61  DVLKAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIRAIVRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S++ + +++++        +G    L+ +E+ ++  L  R  T L++    + +Y 
Sbjct: 121 ARSNSVVTSKEITLDPSTYIATFRGIESVLSAREFSVLHALMERPGTILSRSQIESRIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E +   +DV I  LRKK      GK+ I  + G G+++
Sbjct: 181 WSEEVQSNAVDVVIHGLRKKY-----GKDIIRNIRGAGWMV 216


>gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae
           Ep1/96]
 gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia
           pyrifoliae Ep1/96]
 gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163]
 gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617]
          Length = 222

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F   +  D  ++DLGL D 
Sbjct: 1   MRVLIVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     + KV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMTLIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNCGLASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEHAQEVITTVRGQGY 218


>gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 226

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  ++  L    + V     GE+   L     +D I+LDLGL  I G 
Sbjct: 1   MRVLLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G L ++  A    V G  + LT  EY+++  + + +   +++   + HLYD
Sbjct: 121 GIASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKK+     G + IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKI-----GSDRIETVRGLGYRL 216


>gi|197119049|ref|YP_002139476.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197088409|gb|ACH39680.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 229

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +A +++  L++EN+ V V   GEDG        FD ++LDL L    G 
Sbjct: 1   MHILVIEDEPKVAGALKKGLEAENYMVSVAGSGEDGFFRLNTEVFDLVLLDLMLPGRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ALR     TPV IL+   S++D+V GL SGADDY+ KPF   EL+ARIR ++RR +
Sbjct: 61  EVLTALRKQGFDTPVLILTARDSVDDRVLGLDSGADDYLVKPFAFPELLARIRLVLRREK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + ++      ++LD  T +V  H   I LT +E++++E L   K   +++EM    +
Sbjct: 121 KEKEQVLKLFLADLDLDLVTRKVVRHDQEIELTAREFELLEYLLRYKGNIVSREMLSRDV 180

Query: 179 YDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +D   P   +IDV I +LR+K+      K  ++TV G G+ +
Sbjct: 181 WQVKDRSTPLDNVIDVHIARLRRKIDGPFKLK-LLKTVRGLGFTV 224


>gi|153000445|ref|YP_001366126.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160875042|ref|YP_001554358.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151365063|gb|ABS08063.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860564|gb|ABX49098.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315267274|gb|ADT94127.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 219

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V   +  +  ++  K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKLGMQVDHLNSYQQALQGVKNESFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  DLLKAWRQQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + ++ G L ++L+ + V  +   + L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKKL+N       I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLIE 217


>gi|33597417|ref|NP_885060.1| putative two-component response regulator [Bordetella parapertussis
           12822]
 gi|33602158|ref|NP_889718.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
 gi|33573844|emb|CAE38153.1| putative two-component response regulator [Bordetella
           parapertussis]
 gi|33576596|emb|CAE33674.1| putative two-component response regulator [Bordetella
           bronchiseptica RB50]
          Length = 223

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 8/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSE-NFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +LL+EDD  L  +++  L+ E    V +V D  +  + L   + +  I+LD+GL    G 
Sbjct: 4   LLLVEDDPMLGDALQTALQRELGARVDWVRDGAQAQLALVD-HAYQLILLDIGLPGQSGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LRALR    +TPV +++    + D++RGL  GADDYI KPF  +EL+AR+RA++RRS 
Sbjct: 63  ALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKPFELDELLARLRAVLRRSH 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  G+L V+  A+ V   G  + L+  EY+ +  L  R+  T+++E   + +Y 
Sbjct: 123 NQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLALMQRRGRTVSREQLEHDVYG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E   + V++ +LR+KL     G + IETV G GY
Sbjct: 183 ASVALESNTVAVYVHQLRRKL-----GDDLIETVHGYGY 216


>gi|303247778|ref|ZP_07334047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490862|gb|EFL50761.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 220

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ LA  +++ L      V +    +          FDA++LDL L D  G 
Sbjct: 1   MRILIIEDDQVLAAGLKVGLGLAGMTVDMVGSCDAARTALATTTFDAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R     TPV +L+ +  I D+V+GL  GADDY  KPF+ +EL ARIRAI RR  
Sbjct: 61  DVLRAMRQRGDRTPVLLLTALDEITDRVKGLDLGADDYCGKPFDLDELAARIRAIGRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +    +++   + +  + G  + L+ +E+ ++ LL        +K    + LY 
Sbjct: 121 GRAAPCLTAAGIALEPASLSATINGQPLTLSRREFAVLALLMEHPGAIRSKGEIEDRLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   ++V +  LR K+     G+  IETV G GY
Sbjct: 181 WGEEVESNTVEVHVHHLRAKV-----GREKIETVRGLGY 214


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD A+   ++  L+ E + V  +  G +G+   +   FD +++D  L ++ G  
Sbjct: 4   KLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ ++S      DKV GLQ GADDYI+KPF+ EEL AR+ + +RR R 
Sbjct: 64  VCQNIRWES-DVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRR 121

Query: 122 -HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H Q +I         L+++   + V V    I LT KE+ ++ LL+   + T TKE   
Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            H++      +   + V I  LR+KL ++    N+I+TVWG+GY
Sbjct: 182 QHIWQQATLEDTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGY 225


>gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  LA ++  +L+   +   V   G  G+   +   +D I+LD+ L    GF
Sbjct: 1   MQILIVEDDVRLARALAHILEENGYGTDVVHDGATGLAWAEVGRYDVIVLDVMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   +STPV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 61  SVVADLRRTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K++ +  ++ 
Sbjct: 121 EVLFEKLSAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                E   ++ ++  LRKK+    G    IET+   GY    NA+++T
Sbjct: 181 VESTAEDNNVEAYVSFLRKKM-KFLGSSARIETLRRAGYRFSVNAEEDT 228


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  ++  L+ E + + +   GED ++    +  D ++LD+ L  + GF+
Sbjct: 4   KILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +  S P+ +L+      DKV GL+ GADDYI+KPF   EL+AR+ A  RR   
Sbjct: 64  VCRKIRES-FSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A S     I +G LS++     V+     I LT +E+++++ L+++     T+E  L  
Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV + +LR+K+ + +G   YI+T  G GY  R
Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYFR 227


>gi|306833536|ref|ZP_07466663.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424306|gb|EFM27445.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GEEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   ++TPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKSVTTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + +  G+L+V     T  + G  + + GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KFSDNNLSYGELTVTTSTNTTTINGKEVEMLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  + +++V++ K+RKKL      KN ++T+   GY+L+
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTTFAKN-LQTLRSVGYILK 221


>gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 227

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  L   ++ +L+   ++V     G+ G++     E+  IILD+ L  + GF
Sbjct: 1   MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R A I+TPV +L+  S + D+++GL  G+DDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                 +   D+ +N  +  V   GH + LT KEY + E L   KN  +TK     H++ 
Sbjct: 121 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 180

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223
           D  DE      IDV I  LRKK+    G +N+  I T  G GY++ +
Sbjct: 181 DEFDEFNASNFIDVHIKNLRKKI----GDENHLIIRTKRGIGYIIND 223


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G 
Sbjct: 43  LRLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS 
Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++V GDL+++ ++  V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 163 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  +++++I  LR+K+   AG    I T  G GY+L
Sbjct: 223 VWSYDFGGQANVVEIYISYLRRKID--AGRAPMIHTRRGAGYLL 264


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E + +     G + +++   Y++  I+LDL L ++ G EV
Sbjct: 6   ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR+   
Sbjct: 66  AVKLRELK-DTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTESS 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L+++ DA  V   G  ++LT KEY+++  L+   N    +E  
Sbjct: 125 KAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +A     I+TVWG GY    +  DET 
Sbjct: 185 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEVSKSDETT 241


>gi|33594716|ref|NP_882360.1| putative response regulator protein [Bordetella pertussis Tohama I]
 gi|33564792|emb|CAE44120.1| putative response regulator protein [Bordetella pertussis Tohama I]
 gi|332384127|gb|AEE68974.1| putative response regulator protein [Bordetella pertussis CS]
          Length = 226

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDAIILDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLLAERRLAVEEFDAIILDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ ++V  L  GADD++ KPF  EEL AR+ A++R
Sbjct: 59  DGHTLLTRIRARDDRTPVLVLTARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  GDL+++   +   V+G  + L+ +E+ ++  L  R    L K+  L+ 
Sbjct: 119 RSRGREHPRLTLGDLALDTALQRFTVKGQPLALSPREHAVLRALIQRSGEPLNKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     +  ++ I+V + +LRKKL++       I T+ G GY L ENA D
Sbjct: 179 IQSSDSDVNLEAIEVLVHRLRKKLADTG---VQIVTMRGMGYCL-ENAVD 224


>gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +  +++  LK  ++ V     G       +  ++D ++LDLGL    G 
Sbjct: 1   MRVLLIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ++R    + PV +++   +++D++RGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  DVLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A   +  G+  V+LD  T E     G  + LT +E+ ++  L  R    L++    + 
Sbjct: 121 GGAAPTL--GNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSRNDLEDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +Y   +E E   ++  I  LR+KL     G   I  V G G+++ +NA
Sbjct: 179 IYGWGEEVESNAVEYLIHSLRRKL-----GGEIIRNVRGVGWMVSKNA 221


>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 248

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA-IILDLGLTDIPGFE 61
           ++++EDD  +++ +   L+   F V     G + + +       + +++D+ L D+ GFE
Sbjct: 27  VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   L+      PV  LS   +++D++RGL +GADDY++KPF+ EELVARIR I+RR RG
Sbjct: 87  VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRR-RG 145

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +  G L ++ DA+ V V G  I L+  EY+++  L       +++   L+H++
Sbjct: 146 VLTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVW 205

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + E  +++ FI  LRKK+  A      I TV G GY L E
Sbjct: 206 DYGFDGESTVVETFISSLRKKVDTAP--PTLIHTVRGVGYRLSE 247


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++ +++ L LK  +  V     GEDG+E    +  D ++LDL L  I GFE
Sbjct: 3   RVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  ST + +LS      D V GL++GADDY+ KP   + L ARIRA++RR+ G
Sbjct: 63  VCRRIRAAS-STSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   G L V+  + TV   G +I L   E +++  LS       +++  L  +++ 
Sbjct: 122 VPSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVWEH 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + +++D  + +LR K+ +      Y++TV G GY
Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGY 219


>gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 227

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L +ED+  +A+ +   LK + F V   D G++G       E+D +ILD+ +    G 
Sbjct: 1   MNVLFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMVPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + PV +L+  + ++D++ GL  GADDYI+KPF  EEL ARI A+VRRS 
Sbjct: 61  SILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q+++  G + ++   + V      I LT +E+ ++E L        T+   L H++ 
Sbjct: 121 SNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               P   ++DV I ++RKK+ +      +IE++ G GY  R+
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPIDEPVWIESIRGVGYRFRK 222


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 133/222 (59%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ ++S  +   V + G+    +   Y+ D ++LD+ L +I G +
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  +  TPV +L+      DKV GL+ GADDYI KPF  +E++ARI+A++RR   
Sbjct: 67  VLKWIR-KEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV + +LR+KL    GG N+ IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGY 223


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 132/234 (56%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV
Sbjct: 1   MLVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G 
Sbjct: 61  TKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGK 120

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++
Sbjct: 121 AEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 181 QLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKM-ENVK 233


>gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V     G DG+ L K +E++ IILD+ L ++ G+
Sbjct: 1   MRILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR     + + +L+  S + DKVRGL++GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QVLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSD 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   +I   DL ++         G RI LT KE+ ++  L       L++   ++ ++
Sbjct: 121 HPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 181 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 221


>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56
           R+L+ ED+ ++   + + L    + V   + GED +   K YE     FD  +LD+ +  
Sbjct: 3   RVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDAL---KAYEENEGGFDVALLDIMMPG 59

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G +V + +R    S  + +LS  S   DK+  L SGADDYI+KPF+  EL+AR+ A+ 
Sbjct: 60  IDGMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVC 119

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR    A      S I +G   +NL ++TV     +I LT  EYQ++E     +N  L +
Sbjct: 120 RRVNRSAVKPEEASTITSGPFVLNLKSRTVTKNNKQIDLTQVEYQIMEYFFKNQNAALDR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              LNH++      + KI+DV I ++R K+ +      YI T+WG GY
Sbjct: 180 SSILNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGY 227


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 GRESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB
 gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB
 gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 219

 Score =  127 bits (320), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG++ I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  ++  L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|17548710|ref|NP_522050.1| response regulator for cobalt zinc cadmium resistance transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430959|emb|CAD17640.1| probable response regulator for cobalt zinc cadmium resistance
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+       + +LK    + +V DL   G DG+     +++D I+LD+ L  +
Sbjct: 1   MRLLIVEDEPKAG---DYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+R
Sbjct: 58  DGWQVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + 
Sbjct: 117 RGPMRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   +    ++DV I +LR K+ +    K  I T+ G GYVL   A+
Sbjct: 177 VWDVNFDSNTNVVDVAIRRLRAKVDDPFEHK-LIHTLRGMGYVLDTVAR 224


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    F V + + G DG+ + +  ++D IILD+ L  + G+
Sbjct: 1   MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++++R +K  TPV  L+ +  + D+VRG + GADDY+ KPF   EL+ARIR  +R+S 
Sbjct: 61  TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V     RI LT +E+ ++ LL  R+   L++    + ++ 
Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I TV G GYVL
Sbjct: 180 VNFDTDTNVVDVAIRRLRSKVDDPFDQK-LIHTVRGMGYVL 219


>gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
 gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
          Length = 220

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 120/225 (53%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A+ +   LK  ++ V   + GE  +   K   +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIANVLSANLKDASYAVDWVENGELALTAVKSQPYDLVLLDLGLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  + S P+ IL+    +  +++GL  GADDYI KPF+  EL+ARIR  +R+  
Sbjct: 61  EVLAQLRQQQFSFPIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRKQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           GH  + I  G+L +NL  KT +VQ         LT KE+ +++ L        ++    +
Sbjct: 121 GHHTAEIRYGNLLLNL--KTYQVQNLTTQETQQLTNKEFAILQTLLQHPGVIYSRSDLED 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +Y   +E E   ID  I  LRKKL     GK  I+ + G G+ +
Sbjct: 179 KIYGWGEEVESNAIDFLIHALRKKL-----GKEAIKNIRGVGWTI 218


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL+IED+   A + E +LK    + +V D+   G DG  L     +D I+LD+ L   
Sbjct: 1   MKILVIEDE---ARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGA 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ V++ +R  K   PV  L+    + D+VRG + GADDY+ KPF   EL+ARIR  +R
Sbjct: 58  DGWSVIKMIR-QKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +S G     +  GDL +++  + V   G ++ LT +E+ ++ LL+ R    L++    +H
Sbjct: 117 QSSGRESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASH 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  ++DV I +LR KL      K  I TV G GYVL
Sbjct: 177 VWDVNFDTDTNVVDVAIRRLRAKLDEPFDTK-LIHTVRGMGYVL 219


>gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   I+DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNIVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|21244208|ref|NP_643790.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109847|gb|AAM38326.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDATPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|13475522|ref|NP_107086.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14026274|dbj|BAB52872.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  +A  +  +LK+    V     GE          +DA ILDLGL  + G 
Sbjct: 1   MKILLAEDEPRIAADVATVLKASGMAVDTVRDGEAAWFAGDVENYDAAILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R      PV IL+      ++V G+ +GADDY+ KPF  EEL+AR+RAI+RRS 
Sbjct: 61  TILKRWRANARRFPVLILTARGMWTERVDGINAGADDYLPKPFEMEELLARLRAILRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++ +G L ++     + ++G  + L+  EY+++  L       +       HLYD
Sbjct: 121 GQAAPVLKSGPLVLDTRQMRISLRGIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++ +   ++V + +LR+KL     G + IET  G GY + ++
Sbjct: 181 SGNDRDPNAVEVIVARLRRKL-----GSDVIETRRGFGYFVPDD 219


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E ++  +   GE  ++    ++ + I+LDL L  + G++
Sbjct: 6   RILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRTTS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
              S+          +   +L VNL   +V  +GH + +  KE +++  L+   N   T+
Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           E  L+H++      + + +DV I +LR+K+ +    +N+ + TVWG GY
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIRD---DENWALSTVWGIGY 230


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 128/229 (55%), Gaps = 17/229 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +K +TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREIR-SKHNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   SRG    ++    + +NL    V V G  + +  KE +++  L+   N   T
Sbjct: 125 AKPETPAASRG---KVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L+ ++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 182 REQLLDQIWGYEYVGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGY 228


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   ++  L+ E +++ +   GE G+EL +  + D I+LD  L  + G +
Sbjct: 3   HILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   I+ P+  L+   +++D + GLQ GA+DYI KPF+ EEL+ RI+   R S  
Sbjct: 63  VCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFRNSI- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q ++  G++S+N     V+++   I LT +E++++E L   K     ++  +  ++  
Sbjct: 122 -EQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +  +IDVFI  +RKKL N      YI+TV G GY+  E
Sbjct: 181 NFEYDTGVIDVFINAIRKKL-NLDKDNGYIKTVRGVGYIANE 221


>gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
 gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
          Length = 230

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++++ V     GEDG+     +  D ++LDLGL D+ G +V
Sbjct: 7   ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGLPDLDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ +G 
Sbjct: 67  LRGLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQGR 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G LS++L  + V ++G  I LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 EALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +   + V +  LR+KL +      Y+ T  G GY LRE
Sbjct: 186 PSHVGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRLRE 228


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224


>gi|42784273|ref|NP_981520.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42740204|gb|AAS44128.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++L+  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLSKKIVSGLTEEGHFILKLHNENEGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K+ TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVKM-TPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDY 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   + +   DL V++ +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 TQQNEPNFVQFKDLLVDVSSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 225


>gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 227

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +A  +   L  E F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R  +RR S
Sbjct: 61  RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                      +L ++   +     G RI+LT KE+ ++ELL+  +   L++ +  + ++
Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 DINFDSDTNVIDVAIRRLRAKMDDDFEPK-LIHTVRGMGYRL 221


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V   + G  G+ +    ++D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ ++LR +  +TP+ +L+ + ++E +V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q    T  +L V+L  + V  +  +I LT KE+ ++E   L +   L++ +  + ++
Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV + +LR K+      K  I T+ G GY+L
Sbjct: 181 DMNFDSDTNVIDVAVKRLRAKIDQGYEPK-LIHTIRGMGYLL 221


>gi|171779491|ref|ZP_02920455.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282108|gb|EDT47539.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           ++ILL+EDD +L++SI   L  +NF +V     GE+G+   +   +D I+LDL L +  G
Sbjct: 2   IKILLVEDDLSLSNSIFDFL--DNFADVMQVFDGEEGLYEAESGVYDLILLDLMLPEKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+VL+ LR   I+TPV I++   S+ DK  G + GADDY++KPF  EEL  RI+A+++RS
Sbjct: 60  FQVLKELREQGITTPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   +L+ +    T  V G ++ L GKE+ ++      +N  L K    + ++
Sbjct: 120 GKFNDNTLSYHELTADTSTNTTTVNGKKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  + +++V++ K+RKKL   +  KN ++T+   GY+L++
Sbjct: 180 GFDSDTTISVVEVYVSKIRKKLKGTSFAKN-LQTLRSVGYILKD 222


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 16/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  +   GE+ I   + Y+ + I+LDL L  I G+E
Sbjct: 6   KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           V R +R  K ST P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR  
Sbjct: 66  VCREVR--KTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVV 123

Query: 119 -SRGHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            S+  ++ +I           DL +N    +V   G  I +  KE ++   L+   N   
Sbjct: 124 PSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           T+E  L+H++      + + +DV I +LR+K+ +    +  + TVWG GY
Sbjct: 184 TREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWR--LSTVWGIGY 231


>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
          Length = 231

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ +  + G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q+       ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGY 227


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G+D +E    + FD +ILDL L  +PG  
Sbjct: 10  RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 70  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++    ++  G+L++++    V V G  + LT  E++++  LS       ++    E  
Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L + ++G +    + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 189 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236


>gi|229020326|ref|ZP_04177092.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228740962|gb|EEL91194.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +        G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVCGLTQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS   
Sbjct: 61  CRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSEYI 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKSGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GDNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+V   G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYT 122

Query: 119 ---SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 H Q+  +T  D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +     +YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGYFLQQH 232


>gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 223

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+  L H + + ++     V   D  ED  E     K    D  I+DLGL   
Sbjct: 1   MRILVVEDNGLLRHHLSVQMRDMGHQV---DAAEDAKEADFFVKEQTPDIAIVDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  +I  P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V  + I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL N    +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQNEY-PQEVITTVRGQGY 218


>gi|312138449|ref|YP_004005785.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311887788|emb|CBH47100.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 231

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G   +++      DA++LD+ +  + G  V+ ALR A    P
Sbjct: 17  SLERGLRLSGFTVLTASDGAVALKVVAEAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVP 76

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-----SRGHAQSLIVT 129
           +C+LS  SS++D++ GL+SGADDY+ KPF   ELVARIRA++RR     +       IV 
Sbjct: 77  ICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVV 136

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G LSV+L  + V +    I LT +E+++ E+L+      L++E  L+ ++      +  +
Sbjct: 137 GPLSVDLAGRRVWLGDTEITLTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTNV 196

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DVF+  LR+K     G    + TV G G+VLRE
Sbjct: 197 VDVFVGYLRRKF-EIDGTPRLVHTVRGVGFVLRE 229


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   +  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 75  VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 238


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    E+D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
 gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
           23834]
          Length = 226

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L   +F   +    E   +L     FD ++LD+GL D  GFE+
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTDGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR  +   PV +L+      D++ GL+ GADDYI KPF+  ELVAR++A++RR++  
Sbjct: 65  LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTR 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S+ V  D   ++ A  +  QG  + LT  EY+++  L  R     ++E  L  +
Sbjct: 124 PAAKTESVPVWHD---DVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + G    +   I+  I  LR KL  A     +I T  G GY   E 
Sbjct: 181 FGGNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFNET 226


>gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 270

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|78049167|ref|YP_365342.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037597|emb|CAJ25342.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFPVK-LIHTVRGVGYVL 219


>gi|294624402|ref|ZP_06703094.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601300|gb|EFF45345.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++R
Sbjct: 58  DGLRVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG A  ++  G    +  A T+ + G  I L  +EY++ E+L  R    + K+   N 
Sbjct: 118 RNRGQASEVVQIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNG 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+   D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 LFGFDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 222

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD+ L  +++  L    + V     GE      K   F+ IILDLGL  + G  +L
Sbjct: 1   MLVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R    STPV IL+   S+ED+++GL SGADDY+ KPF+  EL ARIRA+VRRS+G A
Sbjct: 61  QNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S++   +++++  A +V V    +++  +E+ +++ L       L++E  +  +Y   +
Sbjct: 121 DSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEE 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +   ++V I  LRKKL+      N+I T+ G GY+  +N
Sbjct: 181 DVDSNALEVHIHNLRKKLN-----ANFIRTIRGVGYMAEKN 216


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED + +   I L L++ N+ V     G+ G+ L     FD IILD+ L  I G ++
Sbjct: 5   ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGIDGLQI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A + TP+ +L+   S  D+V GL+ GADDY++KPF+  EL AR+RA++RR   +
Sbjct: 65  CQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVAFN 124

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q          +V GDLS+N +   V +    I LT KE+ ++  L+       +++  
Sbjct: 125 TQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++          ++  I +LR KL   A    Y+ TVWG GY   E
Sbjct: 185 LSAVWGYHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKFYE 233


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 126/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD A++  + ++L +E F+ V VTD G   +E     + D I+LDL L  + G 
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETASREQPDLILLDLMLPGMNGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R  + S P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +R + 
Sbjct: 63  DICRLIR-QESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATV 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDLS+++ A TV+  G  I LT  E+ ++  L+ +     T+E  L  ++ 
Sbjct: 122 DEPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR+   LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   + L L+   F V   + G + +E  +    D ++LD+ L  I G+
Sbjct: 1   MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V R LR  +   P+ +L+    + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ 
Sbjct: 61  AVCRILR-RESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     ++ G L +++ A+     G R++LT KE+ ++ LL+      L +   +  
Sbjct: 120 RVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + +V+ +D  +  LR KL  A   ++ IETV   GY L
Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRL 223


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+ V 
Sbjct: 1   MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
            ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR RG  
Sbjct: 61  AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-RGVG 119

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  + V GDL V+  A+ V +    I LT KE+ ++E L LR    ++K   L H++D
Sbjct: 120 AGASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V++  LR+KL         I TV G GY L
Sbjct: 180 FAYEGDPNIVEVYVSTLRRKLR-----AGLIRTVRGAGYRL 215


>gi|257455665|ref|ZP_05620894.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446948|gb|EEV21962.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/223 (39%), Positives = 122/223 (54%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDIP 58
           RILLIEDD  +A  I   L  +N  V +  D  LGE  I    F   DA++LDL L    
Sbjct: 3   RILLIEDDATIADGIVKGLSQQNMMVDWFADAKLGEMAIHEGVF---DAVLLDLTLPRGD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L   R  KI TPV I++   +I ++V GL +GADDY+ KPF  +E+VAR++A++RR
Sbjct: 60  GMTILANWRQQKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALIRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+G +Q+ I  GD+S     + V  QG  + LT KE  ++E      N   ++    + L
Sbjct: 120 SQGRSQTEIRYGDVSYLPQQQQVFYQGKWVDLTAKEITVLEQFISYPNLVHSRASLEDKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y  + + E   I+V I  LRKKL N     ++I T  G GY L
Sbjct: 180 YGWQQDIESNAIEVHIHNLRKKLGN-----DFILTRRGIGYYL 217


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  +    ++ L  E F +   + GE G+EL +  + D  +LD+ L  I GF
Sbjct: 7   IKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGIDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    +  + +L+  +   DK+ GL+ GADDY++KPFN  EL+ RI++++RRS 
Sbjct: 67  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  +  D +  LD  ++T    G  I LT  E  +I+LL       +T++  ++  
Sbjct: 127 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKA 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV + +LR K+   +    YI TVWG GY
Sbjct: 187 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGY 227


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A +  + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|310658906|ref|YP_003936627.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308825684|emb|CBH21722.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 130/219 (59%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+K L++++ ++L   N+ V     GED +   +  ++D IILD+ +  + G+
Sbjct: 1   MKILLAEDEKELSNALVMLLSHNNYVVDAVYDGEDALSYAQEIDYDIIILDIMMPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR      P+ +L+  S ++DKV GL+ GADDY++KPF  +EL+ARI+A++RR +
Sbjct: 61  QVLSKLREKNCKAPILMLTAKSHVDDKVTGLELGADDYLTKPFEMKELLARIKALLRRPQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GD+ +N D   +     ++ L  KE+Q +ELL L     L+K++ ++ ++ 
Sbjct: 121 NFNADILEFGDMYLNRDTCQIICNNQQVVLNKKEFQTMELLILNSKQILSKDLIMDKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + E+ ++ V I  LRKKL+     K  I ++ G GY
Sbjct: 181 YESDAEINVVWVNISSLRKKLAK-LDSKVTIASIRGLGY 218


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 NLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|257870932|ref|ZP_05650585.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805096|gb|EEV33918.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 23/233 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE-----DGIELCKFYE-----FDAIIL 50
           +++LLIEDD+ L         SEN    V ++GE     DG E    YE     +D IIL
Sbjct: 2   IKLLLIEDDRTL---------SENIKEIVAEIGEISQAFDGSE--GLYEAQSGIYDLIIL 50

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DL L ++ G+EVL  LR   + TPV IL+    +EDKV G Q GADDY++KPF +EEL+ 
Sbjct: 51  DLMLPEMNGYEVLAKLRQHTVQTPVLILTAKDGLEDKVAGFQKGADDYLTKPFYREELLM 110

Query: 111 RIRAIVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R +A+++RS G   ++ +V   L+ NL    V +    + + GKE+ ++      +   L
Sbjct: 111 RCKALLKRSLGLFNENQVVYKGLTCNLSTNEVTIDEKLLPIQGKEFALLVYFLQNRGIIL 170

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           TKE   + ++    E  + +++V+I  LRK L +    K  I T+   GY+++
Sbjct: 171 TKEQIFDRIWGFDSETTITVVEVYISNLRKHLRDTGIDKE-IRTLRNVGYIMQ 222


>gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ATCC 35469]
 gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia fergusonii ATCC 35469]
 gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 7   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 67  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L + +  + V +    + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 127 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++V I  LR K+     GK  I TV G GY+L
Sbjct: 187 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYML 222


>gi|254251504|ref|ZP_04944822.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
 gi|124894113|gb|EAY67993.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
          Length = 269

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+         I TV G GY L
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPIG---VRISTVRGLGYCL 244


>gi|119776666|ref|YP_929406.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769166|gb|ABM01737.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   +  I      +  N+     G  G+ L    ++D IILD  L  + G 
Sbjct: 1   MKILLVEDDNTTSEYIVKGFSEQGHNIEAAADGHQGLLLATSNQYDLIILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR     TPV ILS +S+++++V+GL+SG DDY++KPF   EL+ R   +V R +
Sbjct: 61  ALLAALRANANQTPVLILSALSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQ 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  G L + L  + V + GH + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 TAPVQTHLQAGPLEMELLTRNVTLDGHELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G+  IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGYGE-LIETVRGAGYRLRQ 223


>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V V   G  G EL     +D +ILD  L  I G 
Sbjct: 1   MRILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H    +  G L ++L+ +     GH I L+ KE Q++          L+ +    H
Sbjct: 121 ATDAHPSQRLRVGQLELDLNNQIAYRHGHPIELSEKESQLLGYFMSHVGLLLSHKQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+   + P+   +   +  LR+K+    G    I TV+G+GY
Sbjct: 181 LWPSEEIPKSNNLAALVRLLRRKI-EIKGSAPLIHTVYGKGY 221


>gi|325830179|ref|ZP_08163636.1| putative response regulator MprA [Eggerthella sp. HGA1]
 gi|325487646|gb|EGC90084.1| putative response regulator MprA [Eggerthella sp. HGA1]
          Length = 245

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 2/232 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA ++  +L    +   V   G  G+   +  ++D IILD+ L  + GF
Sbjct: 9   MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   IS PV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 69  AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K+M +  ++ 
Sbjct: 129 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDETCE 231
                E   ++ ++  LRKK+    G    IET+   GY  + + A D+  E
Sbjct: 189 VESSAEDNNVEAYVSFLRKKM-KFLGSTARIETLRRAGYRFVADAAPDDASE 239


>gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERVLANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + IE+ LKSE ++V     GE+ + L   Y +D +ILD+ +  + G  
Sbjct: 4   KILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLDG-- 61

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L  +++  K + P+  LS      DK++GL  GADDYISKPF   EL+AR++A +RR +
Sbjct: 62  ILTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYK 121

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  ++++I   DL +N+D   V V+G  I LT KE+ ++E L+  K    + E   
Sbjct: 122 KFNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I  +R+K+        YI+TVWG GY
Sbjct: 182 ETVWKEKFVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGY 225


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225


>gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct]
 gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112]
 gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549]
 gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida Fx1]
          Length = 229

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQ+  ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229


>gi|300857093|ref|YP_003782077.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437208|gb|ADK16975.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 232

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ + + I   L S+ +    TD G +GI L   +  D IILDLGL DI G EV
Sbjct: 7   ILVIEDDRPIRNFITAALSSQGYKYIETDKGNEGISLVMSHNPDLIILDLGLPDIDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-----IVR 117
           +  +R    + P+ ++S   +   KV  L  GADDY++KPF+  EL+ARIR      IV 
Sbjct: 67  IEKVR-GWSNIPIIVVSARGNERQKVEALDKGADDYLTKPFSISELLARIRVSLRHLIVN 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +    +      LS++ D + V V+G  IHLT  EY+++ LL       LT    +  
Sbjct: 126 KDQHEILNNFKVKRLSIDFDKRRVTVEGKEIHLTPIEYKIMALLCKYSGKVLTHNFIIRE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E K + VF+  LR+K+        YI T  G GY L
Sbjct: 186 IWGSSLGSETKSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229


>gi|28198188|ref|NP_778502.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182680822|ref|YP_001828982.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|28056258|gb|AAO28151.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|182630932|gb|ACB91708.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307579290|gb|ADN63259.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 231

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 12/237 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MR+LLIED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  +
Sbjct: 1   MRLLLIEDNADLADAIIRRMRRHG---HAVDWQSDGLAAAGVLRYQRFDLVVLDIGLPSL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  LR    +TPV IL+   +IED+V  L  GADDY+SKPF+  E  AR R ++R
Sbjct: 58  DGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG+A  ++  G    +  A  + + G  I L  +EY+++E+L  R    + K+   N 
Sbjct: 118 RNRGNASEVVRIGGFEFDNAAHRICLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNS 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKDETCE 231
           L++  D      I++++ +LR+KL  A      I TV   GY+L    E    E C+
Sbjct: 178 LFNFDDNAGPNAIELYVARLRRKLEAA---PLRIVTVRRAGYLLEPIVEARGHEACD 231


>gi|17549773|ref|NP_523113.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17432028|emb|CAD18705.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 246

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIEL---------CKFYEFDAIIL 50
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++               FD ++L
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAIGAPGAASEAGGSMFDLMLL 62

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL A
Sbjct: 63  DLGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAA 122

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A++RR  G A  L+  G++ +N   + V   G  I L+G+E+ ++  L  R     +
Sbjct: 123 RMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A     
Sbjct: 183 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPTPPA 237

Query: 231 E 231
           E
Sbjct: 238 E 238


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+KA+A  + + L  E F+V +   G D  +     EFD  +LD+ L DI GFE
Sbjct: 4   RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR +R +  + PV +L+   + +DK+ GL  GADDY+ KPF   EL+AR+ A +RR   
Sbjct: 64  LLRTIRSSH-TYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122

Query: 119 --SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             SR  A     I    L +N DA++V V G  + LT  EY ++  L   + + +  E  
Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +++    P     + V I  LR+K+ + A    +I+ VWG GY++
Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYII 230


>gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430]
 gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430]
 gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 222

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F   +  D  ++DLGL D 
Sbjct: 1   MRVLVVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     + KV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMALIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNCGLASQIITLQPFQVDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEHAQEVITTVRGQGY 218


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           ++IL+++DDK +   +E+  ++E +       G+D I +L    +   +ILDL + ++ G
Sbjct: 17  VKILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTMPDISLVILDLMMPEMNG 76

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 77  MDVIRQVR-KDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 135

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++  G L +N D+  V+ ++G +I LT  E+ ++ LL+   N   + +  
Sbjct: 136 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDI 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 196 FERVWQQESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGY 240


>gi|157373420|ref|YP_001472020.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157315794|gb|ABV34892.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 227

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L+  +  +L+ E F + +   G++G++L    +FD I+LD+ L  + GFE
Sbjct: 3   QILLIDDDLGLSELLAQLLELEGFELTLAHDGQEGLKLALEKQFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ALRV+K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARI+AI+RRS  
Sbjct: 63  VLKALRVSK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRSNI 121

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A ++   GD+ ++   + V  Q   + LTG E+ ++  +       ++KEM    
Sbjct: 122 LPEEKATTVYEYGDIQLDPGRQEVFCQDQLLILTGTEFGLLFEMLQNGGELISKEMLSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +  P  + +D+ +  LRKKL     G+  ++T+ G+GY+
Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKLPERTDGRPRVKTIRGKGYI 224


>gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b]
          Length = 225

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 8/200 (4%)

Query: 28  YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           YV D    GE      K   F+ IILDLGL  + G  +L+ +R    STPV IL+   SI
Sbjct: 25  YVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTARESI 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           ED+V+GL SGADDY+ KPF+  EL ARIRA+VRRS+G A S++   +++++  A +V V 
Sbjct: 85  EDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVD 144

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
              +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V I  LRKKL+  
Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202

Query: 205 AGGKNYIETVWGRGYVLREN 224
               N+I T+ G GY+  +N
Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219


>gi|320107430|ref|YP_004183020.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925951|gb|ADV83026.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+ +A+ ++  L  +  +V+V+  G+DG+EL +   FD ++LD+ L    GF
Sbjct: 1   MKLLIIEDDRRIANLLQQGLSEDGHSVFVSHRGDDGLELIQSQYFDMVVLDIMLPGRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R A+ + P+ IL+    + D VRGL  GADDY++KPF  E L+AR+RA+ RR +
Sbjct: 61  SILKQARHARYAMPILILTARDGMADIVRGLDLGADDYLTKPFQLEILLARVRAMGRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++   K +      I LT KE+ ++ELL  R    +++   +   + 
Sbjct: 121 VPLLDQLRVGDLILDRSQKLLLRGDLEIPLTRKEFVLLELLMRRPQQVISRNELIEVGWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     +D +I  LR K+ N  G  + I TV  +GY L
Sbjct: 181 YDAEVSDNSVDFYIHSLRSKI-NVDGQPSMIRTVRAQGYAL 220


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +E+ L  E + V V + G  G+   +  + D I+LD  L    G EV
Sbjct: 5   ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFSGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+    I D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQEE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++   +L++N   + +  +G R I LT KE+ ++  L +     LT++  L  ++  
Sbjct: 125 DPDVLEFSNLTLNQRTREI-FRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR KL      K  I+TV G GYV+RE
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEENQ-EKRLIQTVRGVGYVMRE 224


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LD+ L  + G E
Sbjct: 6   RVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            AQ       SL + G L+++  A+   + G R+ LT +E+ ++   + +     ++   
Sbjct: 126 LAQNARLESGSLTIAG-LAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LN ++  + E     ++  I +LR K+         I TVWGRGY   E
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKFAE 233


>gi|322389666|ref|ZP_08063214.1| nisin biosynthesis regulatory protein NisR [Streptococcus
           parasanguinis ATCC 903]
 gi|321143665|gb|EFX39095.1| nisin biosynthesis regulatory protein NisR [Streptococcus
           parasanguinis ATCC 903]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL I+DD+ +   I   L++ NF+V      E+ I +C F  FD I+LD+ +  I G E
Sbjct: 4   KILAIDDDEKILRLIANALRANNFHVETRKYIEE-INICDFTGFDLILLDV-MMPISGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R++R  +I+TP+  L+     ED ++G+Q+GADDYI+KPF+ +E +ARI+  +RR   
Sbjct: 62  ICRSIR-PQIATPILFLTAKDFEEDLLKGIQAGADDYITKPFSIKEFIARIQMHLRREER 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA    +  +++   D++ V  Q  RI LT +E+ ++ LL+  +N   + E   N+LY
Sbjct: 121 SNHASKEEIDSNITFYRDSQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +++ I  +I ++R+K        + I+TVWG GY  ++N
Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ ++  I++ LKS  +N  +   G++  E    Y  D ++LD+ +  I G +
Sbjct: 7   KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L+ +R  K  TPV +++      DKV  L+ GADDYI KPF  +EL+AR++A++RR  S
Sbjct: 67  ILKWIRKQK-ETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DLS++  +  V      I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 ENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P + + +DV I +LR+KLS  +G +  I+TVWG GY    N
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLS--SGEQWEIQTVWGVGYKFEVN 228


>gi|225867072|ref|YP_002752450.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225789149|gb|ACO29366.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K  TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-KTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 NQQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN NVY    G + +   +  +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYKK 123

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +         ++++    L++N+      + G  + LT  E+ ++ +L  RK + ++ E 
Sbjct: 124 YNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAED 183

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + ++ D         I V I  LR+K+ +  G   YI+T+WG GY
Sbjct: 184 LFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGY 230


>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G E
Sbjct: 17  RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A     V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R 
Sbjct: 77  VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 135

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ +
Sbjct: 136 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + +++DV I  LR+KL   A    YI+TV G GY + E 
Sbjct: 196 WDPAWVGDERLVDVHIKNLRRKLD--ANPARYIDTVRGVGYRMAEQ 239


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F V  T+ G + + L +   + D  +LD+ +  I GF
Sbjct: 3   KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+AR+++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVN 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G A+    +G  +++L +K  +  G  + LT  E+ +++    ++NT L++++ L+
Sbjct: 123 VQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H++      + KI+DV I +LR+K+        Y++TVWG GY
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGY 225


>gi|149277685|ref|ZP_01883825.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149231373|gb|EDM36752.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57
           M++L++ED+K LA+ +E  LK      YV DL    + G+E      +D I+LDLGL D 
Sbjct: 1   MKVLIVEDEKTLAYEMEDFLKKA---FYVCDLAHTIKSGLEKIGVNSYDYILLDLGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L A +         IL+   ++ED++ GL  GADDY++KPF+  EL +R++AI R
Sbjct: 58  DGLSLLPAAKKHNPDAAYVILTARGNLEDRIAGLDLGADDYLAKPFSLLELQSRMQAIAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     + L+  GD S++L  + +     +I L+ KE+ +   L L +N  LT+     H
Sbjct: 118 RKFNIKEELLRLGDFSIDLQKRVIHCGTEQIELSRKEFDLFSYLLLHQNRVLTRMQLSEH 177

Query: 178 LYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     D+ +   ID  I  +RKKL N     +++ETV G GY ++
Sbjct: 178 IWGTFADDDYDSNYIDAHIKNIRKKL-NVHAPTDFLETVRGVGYRIK 223


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 122/217 (56%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD ALA  I L+LK+E F+      G+  I + +    D ++LD+ L    G EV
Sbjct: 1   MLVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A+   PV +L+  S   D V+GL+SGADDYISKPF  +ELVARIRA +RR+   
Sbjct: 61  CRQIR-AESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEP 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +  GDL +++    V   G  I LT  E+ ++  L+ +     ++E+ L  ++  R
Sbjct: 120 APERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWGYR 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + ++++V + +LR K+ +       + TV G GY
Sbjct: 180 HAADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGY 216


>gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
 gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L  S+  +LK + ++V     G++ ++      +D IILD+ +  + GF
Sbjct: 7   MKLLLVEDERDLNASLTKLLKKQQYSVDSAFDGQEALDFLAVGSYDLIILDIMMPHMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  +R+ +   PV +L+   ++ DK+RGL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 67  EFLERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPL 126

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  S  +  G + + L  K V   G  ++LT KEY+++E L   +N  L++E   +H++
Sbjct: 127 RHILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E E   IDV I  +R+KL ++ G  + I+T  G GYV+
Sbjct: 187 DYEQEAESNTIDVLIKNIRRKL-DSEGQPSLIQTKRGLGYVV 227


>gi|229590040|ref|YP_002872159.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229361906|emb|CAY48806.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S   +V   D G +G+      ++D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   +STP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR   
Sbjct: 63  IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKST 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL +NL ++        + L   EY+++E L       L++ M    ++
Sbjct: 123 VKEFETALRVADLELNLISREASRADQPLSLLPTEYKLLEFLMRNTGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLTPLIRTVRGSGYVIAE 225


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/238 (35%), Positives = 133/238 (55%), Gaps = 18/238 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +EL L  E +     D G  G+E  +  E D ++LD+ L ++ G EV
Sbjct: 5   ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR    + PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++S   
Sbjct: 65  LRRLRRTS-NLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSMA 123

Query: 121 ------GHA------QSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKN 166
                 G +       +++  GD  V LD K   V V  + + LT +E+ M++ L    +
Sbjct: 124 DGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENMD 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L++E  L+ +       E  I+DV++  LR K+ +A G K  I+TV G GYV+R +
Sbjct: 184 IVLSRETLLDKVCGYDYVGETNIVDVYVRYLRSKIDDAFGIK-LIQTVRGVGYVIRSH 240


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD A+  S+   L    ++V + D G+  + +      D +ILD+ +  + G 
Sbjct: 1   MRVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E  R LR A    PV +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA+VRRS 
Sbjct: 61  ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSA 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G +Q L  + DL+++L  + V      I LT  E+ ++E+        L +   L  
Sbjct: 121 PGPGASQQLRFS-DLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEE 179

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G D P     ++V++  LR+KL  A G    I T+ G GY LRE
Sbjct: 180 VW-GYDFPTTANSLEVYVGYLRRKL-EAQGEPRLIHTIRGVGYALRE 224


>gi|148652503|ref|YP_001279596.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571587|gb|ABQ93646.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILLIEDD  +A  I L LKS    V + +D  +  I L     FDA++LDL L    G 
Sbjct: 3   RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGM-FDAVLLDLTLPKGDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPV I++   +I ++V GL +GADDY+ KPF  +E+VAR++A++RRS+
Sbjct: 62  TVLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRRSQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G+++     + V  QG  + LT KE  ++E +        ++    + LY 
Sbjct: 122 GRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + + E   I+V I  LRKKL N     ++I T  G GY L
Sbjct: 182 WQQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYL 217


>gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   AH +   L    F V V   G DG    +  E+D IILD+ L  + G+
Sbjct: 1   MRLLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  + +TPV  L+   +IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QLLQLVR-QRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  + V   G RI LT KE+ ++ LL+ R+   L++ +  + +++
Sbjct: 120 LREAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +  +++V + +LR K+ +    K  I TV G GY L   A DE  
Sbjct: 180 LNFDSDTNMVEVAVRRLRAKVDDPYMPK-LIHTVRGVGYQL--EAPDEAL 226


>gi|325263000|ref|ZP_08129736.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
 gi|324032094|gb|EGB93373.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
          Length = 240

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   L+S+++       G   +        D I++DLGL D+ G EV
Sbjct: 9   ILVVEDDMPVKNLITTTLESQDYKYETAATGNQAVMAAASGNPDIILMDLGLPDMDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
           +R +R   ++ PV ++S  S   DKV  L +GADDY++KPF+ EEL+AR+R+ +R     
Sbjct: 69  IRKIRTWSVA-PVIVISARSDDRDKVEALDAGADDYLTKPFSVEELLARLRSTLRRIQYL 127

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R++    S+   GDL ++  A TV V    IHL   EY ++ LL+      LT +  L+
Sbjct: 128 MRTKDQNSSVFKDGDLVIDYGAGTVFVGEKEIHLMPLEYSLLCLLAQNVGKVLTYQFILD 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAK 226
            ++    E ++  + V++  LRKK+        YI+T  G GY +LR + K
Sbjct: 188 KVWVNAIESDMSSLRVYMASLRKKIEKDKSNPRYIQTHIGVGYRMLRVDEK 238


>gi|149926501|ref|ZP_01914762.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824864|gb|EDM84078.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 132/231 (57%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  LA  ++  L  E F V +   G DG+ L     ++ IILD  L DI G 
Sbjct: 1   MKLLLIEDDLRLADYLKKGLTEEGFVVDLARNGIDGLHLATQGLYEVIILDGMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR +K S PV +L+  + +ED+V GL++GADDY+ KPF   ELVAR+ A+ RR+ 
Sbjct: 61  AVLSALRQSK-SIPVLMLTARAMVEDRVSGLKAGADDYLVKPFAFAELVARLHALGRRTS 119

Query: 121 ---GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                +Q+ ++T  L + LDA  +T +  G  + LT KE+ ++ LL  RK   +++    
Sbjct: 120 TVAAESQTTVLTL-LDLELDAVRRTAKRGGKDLRLTAKEFSLLWLLLRRKGEVISRTEIA 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++D   + E  +IDV I +LR KL +       + T+ G GYVL   A+
Sbjct: 179 ELIWDMHFDSETNVIDVAIRRLRIKLDDPY-EIPLLHTIRGMGYVLEIRAQ 228


>gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC
           13950]
          Length = 257

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 133/230 (57%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDI 57
           +R+LL++D+ AL + +++ L  E    +V D+  +G E + KF     D ++LD+ L D+
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFERVNPDVLVLDIMLPDV 88

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R + + TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++R
Sbjct: 89  DGLRILERVRQSDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 148

Query: 118 RS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RS       A++LIV GDL V+  ++ V      + L+  E++++  L       L++  
Sbjct: 149 RSGQPPTPTAETLIV-GDLRVDTASREVTRGDTAVSLSSTEFELLRFLMRNPRRALSRTE 207

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ +++        I+D++I  LRKK+   +G +  I TV G GY+LR 
Sbjct: 208 ILDRVWNYDFAGRTSIVDLYISYLRKKID--SGREPMIHTVRGVGYMLRP 255


>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 119/217 (54%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++R  RG 
Sbjct: 64  ARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGS 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++ IV G + ++ +++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 122 TETPIVQG-VRIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                K +D+ I  LR+KL + A    YI TV G G+
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGF 217


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 22  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 82  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 140

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR+   LT+   + 
Sbjct: 141 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 200

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 201 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 243


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++I+D   +   I   L+ E ++V   +  E  +E  K  + D  ++D+ L  I GFE
Sbjct: 5   KIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +R +R  +    TPV  LS      DKV GL+ GADDYI+KPF+  EL+ARI+A+ RR 
Sbjct: 65  FVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +   Q+       IV  DL +++D   V+++G +++LT  E+ ++  L+  +    ++ +
Sbjct: 125 QLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD+ALA  I ++L+++ F  V+  D G+  +E+ +  + D ++LDL L    G 
Sbjct: 33  RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQ-ALEVFRSSKPDLVLLDLMLPGSDGI 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  +   P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R   
Sbjct: 92  EVCRQIR-GESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGD 150

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   D+++++    V   G RI LT  E+ ++  L+ +     T+E+ L  ++ 
Sbjct: 151 QKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG 210

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 249


>gi|57234026|ref|YP_181946.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224474|gb|AAW39531.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 222

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DDK L  ++E  L      V     G  G       EFD +ILD+GL D  G 
Sbjct: 1   MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   I T V +L+   S++ KV+GL +GADDY+ KPF  +EL ARIRA+ RR  
Sbjct: 61  EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ T  +S +  +  V      I LT  EY+++E         +T+ M   HL+ 
Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221
                    ID  I KLR+KL  +A  G   I+T+ G GY L
Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGP--IKTLRGAGYRL 220


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++AL   +  +L  E F   V D G D +   +  + D ++LD+ L  + G E
Sbjct: 3   KILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R A  S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR S 
Sbjct: 63  VCKKIR-ASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H     Q  +  G + ++++   V V G  + +  KE++++E+L       +T+   + 
Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV I +LR K+   A    Y+ TV G GY
Sbjct: 182 RVWGADYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGY 224


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|167768929|ref|ZP_02440982.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
 gi|167668569|gb|EDS12699.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++  +++ + + V     G DG++     ++D ++LD+ L +  GF
Sbjct: 1   MRVLIVEDERRLADALCQIMREQKYGVDAVYDGRDGLDYAMSGQYDVVVLDVMLPERSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+RALR    + PV +L+    I DKV GL  GADDY++KPF+ EEL+AR+RA+ RR  
Sbjct: 61  EVVRALRAQNNAVPVLLLTARDEISDKVTGLDCGADDYMTKPFSPEELLARVRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +NL  +T+      + L  KE++++ +L         KE  +  ++ 
Sbjct: 121 EVQHEELRYADLCLNLSTRTLSRGEKSVSLGYKEFEVLHILLSNPRAITPKEELITRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++ +I  LRKK     G +  I  V   GY L
Sbjct: 181 ADSDAEDNNVEAYISFLRKKFFY-LGSQTAISAVRKVGYRL 220


>gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD   A  +   LK + + V     G +G+ L     +D +I+D  L  + G 
Sbjct: 1   MKILLIEDDAETAAYVAKGLKEQGYVVDHAAEGREGLFLAAEGPYDVMIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A   TP+  L+  SSIED+V GL++G DDY+ KPF   EL+AR++A+ RR  
Sbjct: 61  AIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGGDDYLVKPFAFSELLARVQALARRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L  +T    GH + L   E++++E L       +T+ M L  ++
Sbjct: 121 LADVTTQLRIADLELDLLTRTASRAGHSLDLKPLEFKLLEYLVRNAGRIVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+    G  + I TV G GY+L
Sbjct: 181 DFHFDPQTNVVETNISRLRAKVDRGFGC-DLIHTVRGAGYML 221


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   LK E+F V++   G   ++L +  + D +ILD+GL  + G E
Sbjct: 17  RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV   +  V +L+   +  D + GL  GADDY++KPF+  E+VAR+RA++RR R 
Sbjct: 77  VCRQLRVFSDAY-VVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRR 135

Query: 122 HAQSLI----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +S            V G L +N+D + V V    + LT  E+ ++  LS R    L++
Sbjct: 136 APESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSR 195

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  L+ ++         I+DV +  LR+KL ++     Y+ TV G GY
Sbjct: 196 KQLLDTVWGDTWVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGY 243


>gi|163854970|ref|YP_001629268.1| two component response regulator [Bordetella petrii DSM 12804]
 gi|163258698|emb|CAP40997.1| two component response regulator [Bordetella petrii]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  +   L    F             L    E+DAI++DL L D  G 
Sbjct: 1   MRILLVEDELEMASWLVRALAQSGFTPDHAPDARSAEALMAANEYDAIVMDLRLPDKHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R     TPV +L+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VRRSR
Sbjct: 61  VVLRDMRGRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARVAALVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L+ + +++   + G+ + LT +E+  +  L  R    + K      ++ 
Sbjct: 121 GRQFPRLQCGSLAYDGESRAFTLDGNLLFLTPREHAALVALLTRSGYPVDKAQLFGKVFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              E  +  I+V + +LRKKL   AG    I TV G GY+L  +A +  
Sbjct: 181 QDSEANLDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLESSASEPA 226


>gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L    + V V   G DG+ L     +D ++LD  L  I G 
Sbjct: 1   MKLLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L ALR +K  TPV +L+    ++D+VRGLQ GADDY++KPF   EL ARI+ ++RR+ 
Sbjct: 61  ALLAALRRSK-HTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAA 119

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +L+   DL V+L  +     G R+ LT KE+ ++ LL  R+   L++     
Sbjct: 120 PSQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAA 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   + E  +++V I +LR K  +A   +  + TV G GYVL E
Sbjct: 180 QVWDMNYDSETNVVEVAIRRLRNKF-DAPFEQVLLHTVRGMGYVLEE 225


>gi|156934385|ref|YP_001438301.1| DNA-binding transcriptional regulator PhoP [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156532639|gb|ABU77465.1| hypothetical protein ESA_02216 [Cronobacter sakazakii ATCC BAA-894]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L      V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLSELGHQV---DAAEDAKEADYYLNEHLPDVAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R ++IS PV +L+     +DKV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGLSLIRRWRASEISLPVLVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + V +  + I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISMPPFVVDLSRREVTINDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+     G+  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQAEYPGEA-ITTVRGQGY 218


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V+   + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+   IEL+L+ EN+ V   + G+  ++L   +  D ++LDL L D  G++
Sbjct: 3   KILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   K + PV +LS  + + DKV GL+ GA+DY++KPF+  EL+ARI+ I+RR+  
Sbjct: 63  LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +S          I+  +L+ +L+++ V   G  + LT KE++++E L  R +   T++
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L   +      + + +D+ I +LRKKL + A    Y+ T++G GY L
Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+G+++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224


>gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
 gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSI--ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR+LLIEDD ++A  +  EL LK  N     T  G +G+       +DA+I+D  L  + 
Sbjct: 5   MRVLLIEDDSSVADFVASELALKGHNCECAST--GTEGLLAANSARWDALIVDRMLPKLD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V+++LR     TPV ILS +  ++D+V+GLQ GADDY+ KPF+ EEL+AR+ AI RR
Sbjct: 63  GLSVIKSLRDKGDLTPVLILSALGEVDDRVKGLQIGADDYLVKPFSSEELMARLEAIHRR 122

Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     T    DL ++L  + V   G  I L  +EY+++E L       +T+ M L
Sbjct: 123 LAPLGADFRTTLEAEDLRLDLITQEVRRAGRVIALQPREYRLLEYLMRNAGKIVTRSMLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++    +P+  +IDV I +LR+K+         + TV G GY
Sbjct: 183 ENVWGYHFDPQTNVIDVHISRLRQKIDRDF-DYPLVHTVRGAGY 225


>gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           ++D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  VL  
Sbjct: 1   MDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGR 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG---H 122
           LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS      
Sbjct: 61  LRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRR 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ ++   
Sbjct: 121 SDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWSYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 181 FGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 218


>gi|253680891|ref|ZP_04861694.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562740|gb|EES92186.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 231

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ +++  I+L+L+ ++F V     GEDGI+         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+ +    DK++GL+ GADDY+ KPFN  EL AR+ +++RR   
Sbjct: 66  VCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S  ++  ++++    V+L++K       +++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIWKE 230


>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 126/229 (55%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLI+DDK L   +   L +E F V +   G+  +EL +   +  I+LD+ L    GF
Sbjct: 2   LKILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL+ LR     TPV +L+      D+V GL+ GADDY++KP +  ELVARIRAI+RR S
Sbjct: 62  DVLKILR-QHSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRAS 120

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              A       + +G LS++L  +T       + LTG E+ ++E+L  R    ++K+   
Sbjct: 121 IAEANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMT 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +  P  + IDV +  +RKK++ A   K+ I  V G GY+L  N
Sbjct: 181 EQALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYMLTLN 229


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/218 (35%), Positives = 118/218 (54%), Gaps = 1/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  +   L+SE + V +   G   +EL +      IILDL L  + G EV
Sbjct: 5   ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR   + TP+ +L+      DKV GL+ GADDY+SKPFN +EL+ARI A++RR+   
Sbjct: 65  CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S  V+ GDL ++    +V     ++ L+ +E+Q++E L      T+ +E     ++  
Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + ID  I +LR KL +      YI TV G GY
Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGY 222


>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++ + L +  + VY    G   ++L   ++ D +ILDLGL D+ G +V
Sbjct: 4   VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R    + P+ +LS       KV+ L +GADDY++KPF  +EL+AR+RA +RR+R  
Sbjct: 64  IGGVR-GWSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  I+T D +++L  KTV      I LT  E+ ++++L+      +T    L+ ++  
Sbjct: 123 SAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + V++ +LR+KL        Y+ T  G GY L
Sbjct: 183 TYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRL 222


>gi|307132852|ref|YP_003884868.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
 gi|306530381|gb|ADN00312.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
          Length = 222

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALITSAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R  +   PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLNRWRRNRYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLL 216


>gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 230

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLT 55
           MR+LL+ED+  L  +I+  L  +    Y+ D   DG E        + E+   I D  L 
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLTQQK---YLVDWVIDGDEAWGYLEDSWTEYTLAIFDWMLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G E+ + LR  + S P+ +L+   S+EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  KISGLELCKRLRKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +  G+L+++     V  Q        I LT KE+Q++E      N  LT
Sbjct: 118 QRRSPQFQPQKLTVGNLTLDYGNNVVSSQDAVGNVQEITLTYKEFQLLEYFMKHPNQILT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E   N L++   EP   ++   +  LR+KL N  G +N IET+ G GY
Sbjct: 178 TEQIRNQLWEVNAEPVSNVVAAQMRLLRRKLVN-GGCENMIETLHGLGY 225


>gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553078|gb|EGD22759.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 244

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 118/214 (55%), Gaps = 6/214 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G   + +      DA++LD+ +  + G  V+ ALR A    P
Sbjct: 30  SLERGLRLSGFTVLTASDGAVALRVVADAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVP 89

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-----SRGHAQSLIVT 129
           +C+LS  SS++D++ GL+SGADDY+ KPF   ELVARIRA++RR     +       IV 
Sbjct: 90  ICVLSARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVV 149

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G LSV+L  + V +    I LT +E+++ E+L+      L++E  L+ ++      +  +
Sbjct: 150 GPLSVDLAGRRVWLGDTEIALTKREFELTEVLARNAGVVLSRERLLDLVWGYDFVADTNV 209

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DVF+  LR+K     G    + TV G G+VLRE
Sbjct: 210 VDVFVGYLRRKF-EIDGTPRLVHTVRGVGFVLRE 242


>gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
 gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+  LA +I   L +E F   V   G+DG       EFD I+LD+ L    G+
Sbjct: 2   VRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFATACSDEFDVIVLDIMLPGKHGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I TP+ +LS      D       GADDY+ KPF+   L+AR+RA+VRR  
Sbjct: 62  DIVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDLS++     V   G  + LT +EY ++E L       +TK   +  ++D
Sbjct: 122 PQRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +  I++V+I  LRKKL    G ++ IETV G GY
Sbjct: 182 TNYEGDENIVEVYIGYLRKKLDLPFGTQS-IETVRGVGY 219


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  ++  I++ LK + F+V   D G+  +E+ + Y  DA ILD+ +  + GF
Sbjct: 30  VKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGF 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 90  TLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVA 149

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  SLI   D++++ D   V   G  + L+  E+Q++  L +     L+K   L+H
Sbjct: 150 KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDH 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++ ++  LR+K+         I TV G GYVLR+
Sbjct: 210 VWNYDFGGDGNVVESYVSYLRRKIDTKE--PRLIHTVRGVGYVLRK 253


>gi|84515126|ref|ZP_01002489.1| two-component response regulator [Loktanella vestfoldensis SKA53]
 gi|84511285|gb|EAQ07739.1| two-component response regulator [Loktanella vestfoldensis SKA53]
          Length = 216

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 11/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIPGFE 61
           ++ED+  LA  I  +L +E    Y  D+ +DGI    L     +D I+LD+GL    G +
Sbjct: 1   MVEDEPVLAQQINTVLVTEG---YAVDIADDGIAAEALGVSQPYDTIVLDMGLPGRDGMQ 57

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+  R A +  PV ILS      ++V GL +GADDY++KPF+  EL AR+RA++RR   
Sbjct: 58  VLKNWRAAGMRAPVLILSARDGWTERVDGLDAGADDYLTKPFHMPELSARLRAMIRRKSE 117

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +    D+  +     V V G  I LT +E  ++  L       +++     H+Y  
Sbjct: 118 QASPVFERDDVVFDSRINQVMVAGQGISLTAQELAVLSYLFHHAGRLVSRTELSQHIYHH 177

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E   I VFI +LR KL     G + I+TV GRGY+++
Sbjct: 178 DGERESNTIVVFINRLRNKL-----GDSLIDTVRGRGYMIK 213


>gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120]
 gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120]
          Length = 233

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD      ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 127 SQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSEYIFE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY
Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY 229


>gi|239502107|ref|ZP_04661417.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB900]
 gi|260549020|ref|ZP_05823241.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|294648943|ref|ZP_06726393.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|193078364|gb|ABO13342.2| Heavy metal response regulator [Acinetobacter baumannii ATCC 17978]
 gi|260407748|gb|EEX01220.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|292825159|gb|EFF83912.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  S P+  LS    I+D+V+GL+ GADDY+ KPF   EL+ARI++++R
Sbjct: 58  DGWNIINDIRKSGKSMPILFLSARDQIDDRVKGLELGADDYLVKPFAFAELLARIKSLLR 117

Query: 118 RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S LI   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 118 RGQQKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKIDSNFTPK-LIQNIRGMGYVL 221


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD ++A      L+   F V +   GE+G++      +D IILD+ L  + GFE
Sbjct: 3   KILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +    ++ V G ++++  A+ V + G     T KE+ ++  L +  N  L+KE   
Sbjct: 122 LAGKQTQTNTIFVHG-ITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +V  + V I K+R K+        ++ETVWG GY
Sbjct: 181 EKIWGLESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGY 224


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D + + + Y  D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++   DL ++L  + V     R+ LT  E+ ++E+        LT+E
Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E
Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGE 244


>gi|160938478|ref|ZP_02085833.1| hypothetical protein CLOBOL_03376 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438851|gb|EDP16608.1| hypothetical protein CLOBOL_03376 [Clostridium bolteae ATCC
           BAA-613]
          Length = 232

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDKA+ + I   L+  +++    D GE GI        D I+LDLGL D+ G +V
Sbjct: 6   ILIIEDDKAVKNLIATTLEMHDYHYIWADKGEQGILSAASQRPDIILLDLGLPDMDGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +  +TP+ ++S  S   DK+  L +GADDY++KPF+ +EL+AR+R+  RR    
Sbjct: 66  ILKIR-SWTNTPIIVISARSEDSDKIAALDAGADDYLTKPFSVDELLARLRSTQRRLSYM 124

Query: 119 -SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            S    Q SL   G L+++  A    + G  +HLT  EY+++ LL+      LT      
Sbjct: 125 QSLEEVQTSLFANGGLTIDYAAGCACLDGEELHLTPYEYKLLCLLAHNVGKVLTHSYITR 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 EIWGAAWEGDVASLRVFMASLRKKIEKNPSQPQYIQTHVGVGY 227


>gi|29833315|ref|NP_827949.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610437|dbj|BAC74484.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 262

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  LA  +   L+ E + V     G   ++  +    DA++LD+ L D  GF
Sbjct: 34  VRVLVVDDDPDLAEVLSGALRYEGWEVRAAGDGARAVDEARDLLPDAVVLDVMLPDTDGF 93

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +    V  L+   ++ED++ G+ +G DDY++KPF+ EE+VAR+R ++RR+ 
Sbjct: 94  AVLRELRTVRPDVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLLRRA- 152

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A+ L     ++ GDL ++ +A+ V   G  I L+  E++++  L       L+K   L
Sbjct: 153 GMARQLDEGPRLIVGDLVMDEEAREVTRGGELIELSPTEFELLRFLLRNPRRVLSKAQIL 212

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      +  +++++I  LRKK+   AG +  I TV G GYV++  A
Sbjct: 213 DRVWSYDFGGQAHVVELYISYLRKKVD--AGREPMIHTVRGAGYVIKPVA 260


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +   L+   F V     G + ++L   +  D  +LD+ L D+ GF V
Sbjct: 12  LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFAV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR +    P+  ++   S++DK+ GL  G DDY++KPF+ EE+VARIRA++RR+RG 
Sbjct: 72  TRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGD 131

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   DL ++ D+  V   G  I  +  E++++  L L  N  L+K   L+H+++
Sbjct: 132 IDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E  I++ +I  LR+K+ +  G    I T  G GYVLR
Sbjct: 192 YDFRGESGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 232


>gi|325293887|ref|YP_004279751.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325061740|gb|ADY65431.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED+  +A ++ E + + +    +V  +  D   L +   +D ++LD  L D  G
Sbjct: 1   MRILLLEDEPEMARALLEALRRRDVLADHVRTIA-DADALARDGSYDVLVLDRRLPDGEG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++ +LR A+ S P+ +L+ + S++ +V GL +GADDY++KPF  EEL+AR+RA+ RR 
Sbjct: 60  LNLVSSLRKARHSVPILVLTALGSVDHRVDGLDAGADDYLAKPFAIEELLARLRALHRRG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  G+LS++  +  V V G  I    +EY  +E L  R N  +T+   +  +Y
Sbjct: 120 PSLSSQYVSFGNLSIDPKSNEVTVAGAIIEFRRREYLALEALMRRPNRIVTRSNLVEAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  DE E   +D  I ++RKKL+ A      I  V   GY++R N
Sbjct: 180 NLDDEIESNALDAHISRIRKKLAQAEATVE-IRAVRNIGYLIRAN 223


>gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA +++ +L+   + V +   G+ G +      +D +ILD+ L  + GF
Sbjct: 1   MQVLIVEDDVRLASALKHILEDNGYLVDMVHNGQSGYDYAVAGIYDVVILDVMLPKMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+ +LR A + TPV +L+   +I DK+ GL SGADDY++KPF+  EL+A +RA+ RR  
Sbjct: 61  EVVASLRRANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS+NL++  +      I+L+ KEY++  +L       ++KE  ++ ++ 
Sbjct: 121 QVVFEKLEAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   ++ +I  LRKKL    G    I+TV   GY L
Sbjct: 181 VESTADDNNVEAYISFLRKKL-KFLGSSVSIDTVRRVGYKL 220


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 23  VRILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV+I  LR K+     G   +ET+ G GY LR++ 
Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPF-GVTSLETIRGAGYRLRKDG 246


>gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
 gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
          Length = 222

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +   L++EN+ V V   GE  + L + Y    I+LD+ L  I GF V
Sbjct: 4   ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIMLPGIDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +  TP+ I+S     EDK+ GL  GADDYI KP++ + ++A+I  I +R   +
Sbjct: 64  CRKIR-EESDTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRR--Y 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   ++ GD+ VN  ++TV      I +T KE++++ LL   K   LTKE   N ++   
Sbjct: 121 AVDELIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E + + V I +LR+K+ +      +I+TVWG GY
Sbjct: 181 SFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGY 217


>gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA ++   L +E F V V   G  G E     +FD ++LD+ L    G+
Sbjct: 1   MRVLLVEDERRLAETVRRGLTAEGFVVDVEHDGLSGFEAALSGDFDVVVLDIMLPGKHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  ++ TPV +LS      D       GADDY+ KPF+   LVAR+RA+VRR  
Sbjct: 61  DIVRDLRRREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    L ++     V   G  + LT +EY ++E L     + +TK+  L  ++D
Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  I++V+I  LR+K+ +   G+N I+TV G GY L+  
Sbjct: 181 THYEGDDNIVEVYIGYLRRKV-DTPFGRNSIDTVRGVGYRLKSG 223


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A  +   L    F   + + G+ G EL    +   I+LDL L  + G E
Sbjct: 4   KILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V ++LR  K++TP+ +L+      DKV GL+ GADDY++KPF+  E+VARI+A++RR+  
Sbjct: 64  VCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRASN 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A   I  G L V  D   V +   ++  T KE++++  L   KN  LT++  L
Sbjct: 124 VPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      + +I+DV I  LR+K+   +    +I+T+ G GY   E
Sbjct: 184 SAVWKYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEE 231


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +++ L+ E F   +   G    E      FD I+LD+ L  + G E+
Sbjct: 7   VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+ARIR  +RR   S
Sbjct: 67  CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 186 GFDYTGETNVVDVYIRYLRAKLDDRF-HKKYIYTVRGVGYVVRD 228


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L K   +D I+LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++        +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
           29220]
 gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
           29220]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY++KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q +   G+L+ + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVQGIQQLGELAFH-DEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSDVRIATLRGLGYVL 217


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|332160832|ref|YP_004297409.1| transcriptional activator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325665062|gb|ADZ41706.1| transcriptional activator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862712|emb|CBX72855.1| transcriptional activator protein czcR [Yersinia enterocolitica
           W22703]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 129/218 (59%), Gaps = 4/218 (1%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED++  +  +   L    F+V ++  G +G+     Y++DAIILD+ L  + G+ VL  
Sbjct: 1   MEDEEKTSSYLSRALGESGFSVDISANGAEGLHYALEYDYDAIILDVMLPGMDGYRVLEG 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SRGHA 123
           +R +K  TPV +LS   S++++V+GL+  ADDY+ KPF+  ELVARI+A+VRR  + G  
Sbjct: 61  IRASK-QTPVLMLSARGSVDERVKGLRLDADDYLPKPFSLIELVARIQALVRRRSTDGAD 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    ++D   
Sbjct: 120 ITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVWDMNF 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +  +++V I +LR K+ +A      + TV G GYVL
Sbjct: 180 DSDANVVEVAIKRLRDKI-DAPFEVKLLHTVRGMGYVL 216


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 13/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE----LCKFYEFDAIILDLGLTD 56
           M+IL+++DD+A+  S+    +S +++ Y  +  EDG+E    L      DA+++D+ +  
Sbjct: 3   MQILVVDDDQAVRDSLA---RSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPR 59

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G E  + LR      P+ +L+   ++ D+V GL +GADDY+ KPF+ EEL+AR+RA+ 
Sbjct: 60  LDGLETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALT 119

Query: 117 RRSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RRSR  +Q    ++   D++++   + V   G RI LT  E+ +++         L +  
Sbjct: 120 RRSRPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSW 179

Query: 174 FLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE A 
Sbjct: 180 LLNEVW-GFDFPATANSLEVYIGYLRRK-TEQEGEPRLIHTVRGVGYVLRETAP 231


>gi|269216634|ref|ZP_06160488.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122]
 gi|269130163|gb|EEZ61245.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122]
          Length = 234

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ L+ ++   ++   + V     G++G    K   +D I+LDL L  + G+
Sbjct: 10  MDILIVEDNRRLSDAMRQAIEPA-YGVQQAFDGDEGYFYAKDGIYDLIVLDLMLPGMSGY 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL  LR  K++TPV IL+ M  +++++RGL++GADDY++KPF K+EL+ RI AI+RR +
Sbjct: 69  DVLEKLRADKVTTPVLILTAMRGVDERIRGLRAGADDYLTKPFAKDELLLRIEAILRRCT 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +      DL +  D     V    + L G++Y ++E L  RK   ++K    + ++
Sbjct: 129 DSFERKEFSFKDLVLYPDMHAAYVGDAEVKLKGRQYDVLEFLVSRKGQLVSKSQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +    +++V++  +RK+L    G   Y++TV G GY+  E  
Sbjct: 189 GFMSDTSTNVVEVYVSAVRKQL-KPFGYDVYLQTVRGAGYLFGEGG 233


>gi|238028549|ref|YP_002912780.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877743|gb|ACR30076.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LAH + + L  + F +     GE   +  +   +D ++LDL L  + G 
Sbjct: 1   MRLLLVEDNEELAHWLAMTLTHDGFMLDRVGAGEAAEDALRASTYDVVLLDLNLPGVSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R    +TPV IL+   ++++KV  L +GADDYI KPF+  ELVARI+ + RR  
Sbjct: 61  TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G+L  ++D     +    + LT +E+ ++E L LR   T++K      +  
Sbjct: 121 PSRSNRVRCGNLVYDMDRLQFAIDDAPLVLTPREHAVLEALMLRARKTVSKATLAESVSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                    I++++ +LR+KL  ++     I T+ G GY+L + A DE
Sbjct: 181 ADAPTSEDAIEIYVSRLRRKLEASSA---TIITLRGLGYLLEDGAADE 225


>gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316]
 gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR
 gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR
 gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae]
 gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
           18RS21]
 gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K++A +I+ +L  + ++V +   G+DG+E      +D ++LD+ L    G 
Sbjct: 1   MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A + TP+  L+  S   DKV GL  GADDYI+KPF  +EL+ARIR   R+S 
Sbjct: 61  SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G++ +N D+  +E +   + L+ KE+ ++E+        + K   ++ ++ 
Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D  E   ++VFI  LRKKL         I T  G GY L E
Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222


>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L+  I  ML+   +        E+  ++     F  I+LD+ L D  GFE
Sbjct: 5   RILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEGFE 64

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R LR  K+S  PV   S  ++ +D++R    G DDY+ KP++ +EL++R+ A++RR+ 
Sbjct: 65  ICRQLR--KVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAY 122

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +   ++ G + +N   +TV   G ++ L  +E+ ++  L   +NT + KE  L+ ++
Sbjct: 123 GQTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   + V I  LR+KL +      YI+TVW  GY+L
Sbjct: 183 GAFSEVEPSTLTVHIRWLREKLEDDPASPKYIKTVWRLGYML 224


>gi|213417018|ref|ZP_03350162.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213580461|ref|ZP_03362287.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213612642|ref|ZP_03370468.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648225|ref|ZP_03378278.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213864844|ref|ZP_03386963.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828350|ref|ZP_06546263.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+V V   G   +   + +  D ++LD+ L  + G E
Sbjct: 3   RLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR  K S PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRALR-QKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRR-RG 120

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   +  G + ++++   V V G  + L  KE++++E+        LT+   ++
Sbjct: 121 SEPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLID 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV + +LR K+ +  G   ++ TV G GY
Sbjct: 181 RVWGSDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGY 223


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +    +  L  E + V+V   GE+ ++     + D IILDL L  I G E
Sbjct: 4   KILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S G     I  GDL ++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237


>gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 239

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDKA+ + I   L+++++  ++ + G   I     Y+ D IILDLGL DI G E
Sbjct: 5   QILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDIDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R    + P+ ++S  S   DK+  L +GADDY++KPF+ +EL+AR+R  +RR   
Sbjct: 65  IISKIRTWS-NVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVALRRVNY 123

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +      S  + GDL ++  ++ V +    IHLT  EY++I LL+      LT    L
Sbjct: 124 NNEIKDSNGSTFLNGDLKIDYISRGVFIGEKEIHLTPIEYKLICLLAKNLGKVLTHNFIL 183

Query: 176 NHLYDG---RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      D P ++   VF+  LRKK+        YI+T  G GY
Sbjct: 184 KEIWGNVLPNDTPSLR---VFMATLRKKIEETPSRPKYIQTHVGIGY 227


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+ +   V    + + LD +T EV   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 245


>gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 223

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G    +   +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILREWRQQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G++ +   + +V  +G  I L  +E  ++EL     +  LT+      LY 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LRKKL     G  +I T+ G GY L
Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSTFIRTLHGVGYTL 216


>gi|229819651|ref|YP_002881177.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565564|gb|ACQ79415.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 230

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A+A  +   L  E ++V V   G   IE       D  +LDLGL D+ G +
Sbjct: 6   RVLLAEDDPAIAEPLARALTREGYDVSVHGTGRGAIEGAA--STDLFVLDLGLPDMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  +
Sbjct: 64  VARWIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRAGA 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G     +   ++ V++ A     QG R + LT KE++++ +L     + +++E  +  +
Sbjct: 124 DGGDDDELSAQNVRVDVAAHRA-FQGERELQLTAKEFELLRVLVREAGSVVSRESLMREV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +        K +D+ I  LR+KL + A    YI TV G G+
Sbjct: 183 WASDPTGSTKTLDMHISWLRRKLGDDANAPRYISTVRGMGF 223


>gi|71279007|ref|YP_269498.1| response regulator [Colwellia psychrerythraea 34H]
 gi|71144747|gb|AAZ25220.1| response regulator [Colwellia psychrerythraea 34H]
          Length = 243

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 31/245 (12%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ LA +++  L  E F V     G+  +        D +ILDLGL DI G 
Sbjct: 1   MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSHDMVILDLGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K   PV IL+   SI+ KV+GL  GADDY++KPF+ +EL+AR+R I RR  
Sbjct: 61  LVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERR-L 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-----------QGH-------------RIHLTGKEYQ 156
           G A S ++T D  V+LD K+ +V           Q H              +H + KE+ 
Sbjct: 120 GTASSSMITID-RVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFM 178

Query: 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
           +++ L        ++E   + LY   +E     ++V I KLRK L N      +I+ V G
Sbjct: 179 VLKALMENAGRIQSREQIESKLYQWGEEVLSNAVEVHIHKLRKNLPN-----KFIQNVRG 233

Query: 217 RGYVL 221
            GY++
Sbjct: 234 VGYII 238


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +   L  E +NV     G++ I +    + D I+LD+ L    GF 
Sbjct: 4   KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  KI++P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCKKLR-EKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  + +I  GDL ++L +  V  +G  + LT +EY++I+ LS +     T+E  L  
Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +++ +DV + +LR+K+ +      YI T  G GY  R+ 
Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYFRKQ 229


>gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++ F V           + K   FD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R   +  PV IL+   S+ ++V GLQ+GADDY+ KPF+  EL AR++ ++RR  
Sbjct: 61  KLLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ N  ++   + G  + L+ +E  +++ L   K   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++A      L+   F+V +   G++G++    +++D IILD+ L    GFE
Sbjct: 3   KILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+ K +TP+ ++S      DKVRGL  GADDY++KPF+  ELVAR+RA + R   
Sbjct: 63  ICKEIRLTK-NTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + LI  G++S+   +++V V     +LT KE+ ++ LL+        KE   
Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I ++R+K+        YIET+WG GY  R
Sbjct: 182 ETIWGWDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKFR 228


>gi|126698102|ref|YP_001086999.1| two-component response regulator [Clostridium difficile 630]
 gi|254974121|ref|ZP_05270593.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091521|ref|ZP_05320999.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255099627|ref|ZP_05328604.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255305511|ref|ZP_05349683.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255313249|ref|ZP_05354832.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515939|ref|ZP_05383615.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649031|ref|ZP_05395933.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682222|ref|YP_003213507.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685821|ref|YP_003216954.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519145|ref|ZP_07405492.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115249539|emb|CAJ67355.1| Two-component response regulator [Clostridium difficile]
 gi|260208385|emb|CBA60900.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211837|emb|CBE02243.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK +   I++ L+++N+    TD G   I L    + D IILDLGL DI G EV
Sbjct: 7   VLIVEDDKPICKFIKVSLETQNYRCVETDNGGTAISLIHSLDPDLIILDLGLPDIDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    +  + ++S      DKV  L  GADDY++KPF+  EL+AR+R  +R     
Sbjct: 67  IGRVRACAKTNKIIVVSAREHERDKVEALDGGADDYLTKPFSVTELLARVRVALRNKAQQ 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A       +L ++ +   V + G  IHLT  EY++IEL+S      LT +  ++
Sbjct: 127 DNINNDAPKSFEVKNLKIDYENHIVSINGEEIHLTPIEYKIIELMSKYSGRVLTHKFIID 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E E + + VF+  +R+K+        YI T  G GY
Sbjct: 187 KVWGNYYESENQSLRVFMASIRRKIEKNPAQPEYILTEVGVGY 229


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G 
Sbjct: 17  LRVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS 
Sbjct: 77  EVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSG 136

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ 
Sbjct: 137 ASEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 197 VWNYDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVLKPVA 242


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+ +   V    + + LD +T EV   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 238


>gi|319745720|gb|EFV98017.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K++A +I+ +L  + ++V +   G+DG+E      +D ++LD+ L    G 
Sbjct: 1   MRLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A + TP+  L+  S   DKV GL  GADDYI+KPF  +EL+ARIR   R+S 
Sbjct: 61  SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G++ +N D+  +E +   + L+ KE+ ++E+        + K   ++ ++ 
Sbjct: 121 LIRTNQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D  E   ++VFI  LRKKL         I T  G GY L E
Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A      L+   F V +   G+ G++     +FD IILDL L ++ GF+
Sbjct: 3   KILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVREIK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S +   D      + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGY 225


>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 230

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           ILLIEDD ++   +E  L  E F V     GE+G+   KF+   FD IILD+ +  + G 
Sbjct: 5   ILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGV--AKFFHGSFDLIILDIMMPKLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR +A +RR  
Sbjct: 63  EVVRIIR-EKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFT 121

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++     + +I  GDL ++    TV  +  ++ LT KE+++++L +  +N   TK    
Sbjct: 122 KYSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N +++     +  +I+V + +LR+K+        YI+T+WG GY L
Sbjct: 182 NLIWNEEYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKL 227


>gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  +I   LK   + V     G + +E+ +   +D IILDL L  + G 
Sbjct: 1   MKILIVEDEQILNDTINKSLKKSGYEVESAFDGINAMEMIEIESYDLIILDLNLPHMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS  S I+DKV GL +GA+D++ KPF+ +EL AR+R++ RR+ 
Sbjct: 61  EILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I    +  +   + V V G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQKNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRE 223
              +     I V I  LRKKL N     NY  IE   G GY+LR+
Sbjct: 181 SSVDLLSNSIRVHISALRKKLKNKL---NYDPIENRIGVGYLLRK 222


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E ++      GE+G++      FDA+ILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+++R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKSIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +I   ++ V+   + V + GH + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMF 224


>gi|221218319|ref|YP_002524346.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
 gi|221163346|gb|ACM04312.1| two component transcriptional regulator, winged-helix family
           [Rhodobacter sphaeroides KD131]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ L +++   +      V       +  +      +D  +LDL L D  G 
Sbjct: 11  MRILLIEDDEVLGNAVADHVAEAGHMVDRAKCLSEADDSLAVATYDLALLDLMLPDGLGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R    STPV IL+ +  I +++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 71  PFLRKRRARGDSTPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYG 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G   V+L A+T+  +G  + LT +E+ ++E    R N  L+K      L+ 
Sbjct: 131 GNPNPVVRLGAFEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V++ +LR+KL ++      IETV G GY L
Sbjct: 191 FEAEIESNAIEVYVSRLRRKLDHSV-----IETVRGLGYRL 226


>gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  LA  +   L +  +       G D +   +   F+ +ILDL L D+ G E
Sbjct: 5   RLLIVEDDPRLARLLVNELAAAGYAPSAVHTGSDALAKLEEEAFELVILDLNLPDLDGLE 64

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V  A RVA +  T + +L+    +E +V+GL +GA DY++KPF+ +EL+AR+ A +R  +
Sbjct: 65  V--AHRVAGQKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVHARLRERK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H + +I  G L ++   +   V G  + LT +EY ++ELL + +    +KE   + LY 
Sbjct: 123 RH-EDVIRVGTLELDRVKRQCRVDGAVVPLTAREYALLELLLVNRGRIFSKEELEDRLY- 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G D P    I+VFI  LR+KL+ A G +  I TV G GYV+R
Sbjct: 181 GMDLPASNTIEVFISNLRRKLA-ARGVQGLITTVRGMGYVVR 221


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58
           RIL+++DD+ +A  IE+ LK++    Y+ D   DG+E  K  E D    I+LD+ +  + 
Sbjct: 3   RILIVDDDRQIADLIEVYLKNDG---YIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E  + +R      P+ ++S  +   DK+ GL +GADDY+ KPFN  EL AR++A++RR
Sbjct: 60  GLEFCKYVRKNN-QVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRR 118

Query: 119 SR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +     G A  ++  G ++++  +  V  +G  I LT +E++++ LL+  +      E  
Sbjct: 119 ANYKTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEI 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++   E   K + V I  +R+KL  A  G++ I+TVWG GY
Sbjct: 179 FEKVWNEPGEGSNKTVMVHISNIREKLEAALPGESVIQTVWGVGY 223


>gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
 gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   ++  L    F++     G  G E      +DA+ILDL L  I G 
Sbjct: 9   MRILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 69  DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G ++++  A      G  + L  KE+ ++ELL   K   L +++    LY 
Sbjct: 129 GQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      ++V +  LR+KL     G ++I TV G GY L
Sbjct: 189 WDENVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 224


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL+IED+  L   ++  L+    N YV D+  DGIE   L    ++  I+LD+ L  I
Sbjct: 1   MRILVIEDEPKLGDYLKKGLEE---NGYVVDIARDGIEGRYLATEGDYALILLDVMLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL+A+R    + PV +L+    +ED+V GLQ GADDY+ KPF+  EL+ARI+A++R
Sbjct: 58  DGFAVLQAIRRTS-NVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    +++   DL ++L ++       R+ LT KE+ ++ +L  R+   L++      
Sbjct: 117 RGKPQESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++   + +  +++V I +LR K+ +    K  + TV G GYVL + +
Sbjct: 177 VWEMNFDSDTNVVEVAIRRLRSKIDDPFEVK-LLHTVRGMGYVLEDRS 223


>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 219

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 9/221 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+ V 
Sbjct: 1   MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122
            ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR RG+ 
Sbjct: 61  AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-RGNG 119

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G+L ++  A  V + G  + LT KE+ ++E L+LR    ++K   L H++D
Sbjct: 120 AGASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I++V++  LR+KL         I TV G GY L
Sbjct: 180 FAYDGDPNIVEVYVSTLRRKLD-----AGLIRTVRGAGYRL 215


>gi|312960504|ref|ZP_07775011.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
 gi|311285238|gb|EFQ63812.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S   +V   D G +G+      ++D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   +STP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR   
Sbjct: 63  IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKST 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL +NL ++        + L   EY+++E L       L++ M    ++
Sbjct: 123 VKEFETALRVADLELNLISREASRADQPLTLLPTEYKLLEFLMRNTGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   +IDV I +LRKK+ +  G    I TV G GYV+ E
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLTPLIRTVRGSGYVIAE 225


>gi|300690245|ref|YP_003751240.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299077305|emb|CBJ49931.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLSRALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++   +     ++V + +LRKKL   AG    I TV G GY+L   A
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G   + L +    D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      PV  L+      DKV+GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 71  VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTAP 130

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S++   DL ++ D   V   GH + L+  E++++  L L     L+K   L+H+
Sbjct: 131 DEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENA 225
           +      +  I++ +I  LR+K   L++A G +    I T  G GY+LRE+ 
Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLLRESP 242


>gi|254412739|ref|ZP_05026512.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180474|gb|EDX75465.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 235

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 121/231 (52%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           M++LL+ED+  L  +I+  L  E    YV D   DG E   + E     +   I D  L 
Sbjct: 1   MKVLLVEDEPDLGAAIKRALSLEK---YVVDWVVDGTEAWGYLENQEMQYTLAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ G E+LR LR  K S PV +L+    +ED+V GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  ELSGLELLRRLRANKSSLPVLMLTAKDRLEDRVAGLDAGADDYLVKPFRMAELLARVRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV-----EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +  G L+++   +TV     + +   + LT KEYQ++E      N  +T
Sbjct: 118 QRRSPQLQPQQLQVGSLTLDCGTRTVYRVAAKGEKQEVPLTNKEYQLLEYFMRHPNQVVT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   N L++   EP   ++   I  LR+KL  + G    IETV G GY L
Sbjct: 178 SDQIRNQLWEVSAEPLSNVVAAQIRLLRRKL-ESIGCAIPIETVHGIGYRL 227


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ ++A   +  L+  +F V +   G+ G+E     +FD IILD+ L  + GFE
Sbjct: 3   KVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREAK-EIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++     +I    L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGY 225


>gi|16760106|ref|NP_455723.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29142123|ref|NP_805465.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052791|ref|ZP_03345669.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428093|ref|ZP_03360843.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|73621401|sp|Q8Z7H2|PHOP_SALTI RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|25300977|pir||AH0646 transcription regulatory protein PhoP, regulator of virulence
           determinants STY1271 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502400|emb|CAD08355.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137752|gb|AAO69314.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 224

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+   L++E F V V   G +G+   +   +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G L+V+  A+ VE  G  + LT KE+ ++E L++      +K   L H++D
Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V++  LR+KL     G  +IETV G GY LR
Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-----GPGFIETVRGAGYRLR 217


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +E  LK E + V+V   G+D +EL    + D ++LD+ L    G E
Sbjct: 4   KIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        IV  D+ V  +A +++ +G  I LT +E+++   L+      +T+E  
Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV I +LR+K+ + A    YI T  G GY L+
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGYFLQ 230


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  +   L    ++V     G D + + +  + D I+LDLGL  + G E
Sbjct: 14  RVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGVE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       V +L+      D++ GL  GADDYI+KPF+  ELVAR++A++RR R 
Sbjct: 74  VCRQIRTFS-DCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQ 132

Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        +   + GDL+++   ++V V G  + LT  E+ ++++LS R     +
Sbjct: 133 RGAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFS 192

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   ++ ++D     +  I+DV +  +R+KL +      YI+TV G GY + + A
Sbjct: 193 RRQLIDEVWDIAWVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRMGQGA 247


>gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+     +   L+   + V   + G  G+ +    E+D ++LD  L  + G 
Sbjct: 1   MKLLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A++      PV ILS M S+ED+V GLQ+G+DDY+ KPF   EL+AR+  I+ R++
Sbjct: 61  KVLSAIKATLEHLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  S +    L+V+L A  V      + L  KE+Q+I+         +++      +
Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL   AG ++ + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCRDLLHTVRGAGYVLR 223


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL+++DD+A+  S+    +S  FN Y  D    G+D ++       DA++LDL +  +
Sbjct: 1   MRILVVDDDRAVRESLR---RSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLR 117

Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+     S   ++   DL+++   + V      I LT  E+ ++E+L       LT+   
Sbjct: 118 RAVPDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRI 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 178 LEEVW-GYDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRETPP 228


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 6   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 66  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 125 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 234


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGY 263


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD ALA  + ++L+SE F   +V D GE  +   +    D ++LDL L  + G 
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRENRPDIVLLDLMLPGMSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+R  +   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR  
Sbjct: 63  DVARAIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A  L+  G     +S+++ A TV   G  + LT  E+ ++  L+ +     T+E+ L 
Sbjct: 122 DVAPELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R   + ++++V + +LR K+         I TV G GY
Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  IE+ LK E F++ + + G++G+   K+  FD I+LD+ L  + GFE
Sbjct: 4   KILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      P+  L+    I DKV     GADDYI+KPF+ EEL+AR++A++RRS  
Sbjct: 64  VCKRIR-EDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRSTL 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +   +  DL ++  A  V   G  I L+ KE+++++ L L K   L ++  L  ++
Sbjct: 123 KNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+D++I  LR K+      K +I+T  G G+V +
Sbjct: 183 GFDQIGNNNILDLYIKYLRDKIDKPYLRK-FIQTKRGIGFVFK 224


>gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +   L+   + V   + G+ G+ +    E+  +ILD  L  + G 
Sbjct: 1   MKILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A++  + + PV ILS M S+ED+V GLQ+G+DDY+ KPF   ELVAR+  I+ R++
Sbjct: 61  KVLSAIKATEENLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ ++   L ++L A  V  +   + L  KE+Q+I+         +++      +
Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL   AG  + + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEE-AGCPDLLHTVRGAGYVLR 223


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+ +   V    + + LD +T EV   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 195 VWRYDFGGDVNVVESYVLYLRRKIDT--GEKRLLHTLRGVGYVLRE 238


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K ++  +   L+ E + V V   GEDG+        D ++LD+ L  + GF+V
Sbjct: 5   ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLDGFQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A  S P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A +RR+   
Sbjct: 65  CRKIR-ASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTESG 123

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + S    +  TG + ++     V      I LT +E+++++ L+L+     T+E  L  +
Sbjct: 124 SGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +++ +DV + +LR+K+ + +    YI T  G GY  R
Sbjct: 184 WGYEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYFR 227


>gi|240080009|ref|ZP_04724552.1| BasR [Neisseria gonorrhoeae FA19]
 gi|240127506|ref|ZP_04740167.1| BasR [Neisseria gonorrhoeae SK-93-1035]
 gi|268596151|ref|ZP_06130318.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268685880|ref|ZP_06152742.1| BasR [Neisseria gonorrhoeae SK-93-1035]
 gi|268549939|gb|EEZ44958.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268626164|gb|EEZ58564.1| BasR [Neisseria gonorrhoeae SK-93-1035]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G           +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAVSASLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R A  + PV I++    +  ++ GL  GADDYI KPF+  E  AR+RA++RR  
Sbjct: 61  DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAEFKARMRAVLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+ +  G LS+N     VE+  +G ++ L+ KE+ +++ L  R    L++    + +
Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAEGRQVALSNKEFSVLQALLARPGVILSRSDSEDKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
           Y    E E   +D  I  L KKL     GK  I+ V G G+++ R++A
Sbjct: 181 YGWGGEVESNAVDFLIHGLCKKL-----GKESIQNVRGVGWLMPRQDA 223


>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
 gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   + + +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +  TPV  L+    + D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  QVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV I +LR K+ +    K  I T  G GYVL
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPFPHK-LIHTRRGMGYVL 219


>gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 270

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|313792774|gb|EFS40855.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA1]
 gi|313803438|gb|EFS44620.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA2]
 gi|314964147|gb|EFT08247.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL082PA1]
 gi|315078949|gb|EFT50967.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL053PA2]
 gi|327457282|gb|EGF03937.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL092PA1]
          Length = 227

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD     ++ + L +  + V +T  G+  +E+   ++ D I+LDLG+  + G 
Sbjct: 1   MRILIADDDPQFLRALRITLGARGYEVLLTRDGQHALEMAIDHKPDIILLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R    S P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + V+L A TV   G  + LT  E++++ELL   +   +T++  L+ 
Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   + ++I +LRKKL        Y+ T  G GY L
Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223


>gi|251787958|ref|YP_003002679.1| DNA-binding transcriptional regulator BasR [Dickeya zeae Ech1591]
 gi|247536579|gb|ACT05200.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDE 228
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++  +KDE
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKDDQSKDE 225


>gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
 gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC
           49540]
          Length = 225

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 120/203 (59%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED++ LA  +++ ++   + V   + G+  +EL +   +DAIILD+ +    G 
Sbjct: 5   MRILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R     T + +L+ M+  +D+V GL SGADDY++KPF+ +EL+AR+R++ RR++
Sbjct: 65  EALKEIRARGDRTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRSLERRAK 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +   DL ++ D + +E   + I L+ +E QM+    L     LT +  LNH++ 
Sbjct: 125 DYGDGDLEFADLHLDSDEQVLE-SSNSISLSREETQMLGYFILNAGKKLTADDLLNHVWS 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             DE + + + + IC LR+K  +
Sbjct: 184 ADDEADAEDVWINICYLRQKFQS 206


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A+ +   L+ E + V     G + ++  +  + D I+LD+ L ++ GF+V
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LRA+R A    PV IL+      DKV GL+ GADDY++KPF+  ELVAR++A +RR+   
Sbjct: 65  LRAIRQAS-GVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123

Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R H ++   V  DL ++L   TV   G  I LT +E+Q++ +L+       T++  ++ 
Sbjct: 124 LREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL        Y+ T  G GY +R
Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228


>gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+ +ILDLGL  + G 
Sbjct: 16  MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 76  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++   + V  QG  I+L  KE+ ++  L  +    LT++     LY 
Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ E   ++V I  LRKK          I TV G GY++
Sbjct: 196 WDEDVESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 231


>gi|157962629|ref|YP_001502663.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847629|gb|ABV88128.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           +R+LLIEDD+ LA ++ +LM  S     + ++ G  G+ L     +D +++D+GL  + G
Sbjct: 2   IRVLLIEDDRDLAETLLQLMEMSHMLPDHASN-GIAGLNLASNNHYDVLVIDVGLPKLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + + LR     TP+  L+  SSI++K+ G  SG DDY++KPF+  EL+ARI A+  R 
Sbjct: 61  YSICKQLRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRK 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H + L + G L +N + + V  QG  I LT   Y ++E+L       ++++   N L+
Sbjct: 121 SSHVKRLDIAG-LIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G + P   ++   I  LR+ L+     +  + T  GRG+ LR +
Sbjct: 180 -GDEPPSSNVLKAHIYYLRRALTQVQLAQ-MLYTSTGRGWALRPS 222


>gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter
           arcticus 273-4]
 gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR
           family) [Psychrobacter arcticus 273-4]
          Length = 224

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  I L LKS    V      + G    +   FDA++LDL L    G  
Sbjct: 3   RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLDLTLPKGDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+  R   I TPV I++   +I ++V GL +GADDY+ KPF  +E++AR++A++RRS+G
Sbjct: 63  VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +Q  +  G+++     + V  QG  + LT KE  ++E +        ++    + LY  
Sbjct: 123 RSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + + E   I+V I  LRKKL N     ++I T  G GY L
Sbjct: 183 KQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYL 217


>gi|84622660|ref|YP_450032.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84366600|dbj|BAE67758.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A T+ + G  I L  +EY++ ++L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 181 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 220


>gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 219

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L S+ + +         IEL +  + D ++LDLGL  + G 
Sbjct: 6   VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+LR  R   +  PV ILS  +     V+ L+ GADDY++KPF   ELVARIR  +R   
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +  TGDLSV+L  + V+V+G  + L+ KEY ++ +L       LT    L  +
Sbjct: 126 QQQGEKPIFQTGDLSVDLVKRIVKVEGKEVKLSPKEYDILRMLVQHAGKVLTHHFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   D  +V+ + V++ +LR+K+  +     YI T  G GY LRE
Sbjct: 186 WG--DSTDVQYLRVYVRQLRQKIEKSPDQPRYITTETGVGYRLRE 228


>gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG  L     FD +ILD+ L D+ G+
Sbjct: 1   MRLLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R +    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I   DL ++L        G +I+L+ KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+      K  I TV G GY L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRSKIDEGFEPK-LIHTVRGMGYKL 221


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L    F+V     G D I   + ++ D ++LD+ L D  G+E
Sbjct: 12  KILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDGYE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV  L+    + DK++GL +GADDY++KPF+ EE+V RI+ I+RR+  
Sbjct: 72  VLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTTP 131

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  +LI   DL +N D   V  +GH + L+  EY+++  L +     ++K   L+H++
Sbjct: 132 SEEDSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGK-----------NYIETVWGRGYVLR 222
           D     E  I++ +I  LR+K+ +A G               I T  G GYV+R
Sbjct: 192 DYDWIGEASIVESYISYLRRKIDSADGLGITDPKEVAALVPLIHTKRGIGYVMR 245


>gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 229

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 127/230 (55%), Gaps = 12/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+ LA  ++  L+S  F V V ++G       +  + D +ILD+ L    G  +
Sbjct: 4   VLLAEDDRRLAELVKDYLESHGFQVVVEEVGHTVPRAVQSLDPDIVILDVMLPGKDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R  + + P+ +L+   S  D+V GL+ GADDY+ KP     L+ARIRA++RR +  
Sbjct: 64  CKEIR-PRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAEPRVLLARIRALLRRYQQG 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               QS +  GDLS+ + ++ V++ G  I L+  E+ M+   + +    L++E   N +Y
Sbjct: 123 EDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTFAKQPGKVLSREYLFNVIY 182

Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               DG D    + IDV I +LRKKL + +   N I+TVWGRGY+    A
Sbjct: 183 GRPYDGMD----RTIDVRISQLRKKLGDHSDDPNRIKTVWGRGYLFVAEA 228


>gi|229588980|ref|YP_002871099.1| two component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360846|emb|CAY47704.1| two component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+ A ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEEYAAAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   V G  + LT +E  ++E L  R    ++KE   + ++ 
Sbjct: 121 LGGERQQACGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GQPIAIVTFRGLGYLL 218


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+ A+   I + LK   F+V+    G + +       FD ++LD+ + ++ GFE
Sbjct: 3   RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              A+R    +  + +L+  +  EDK+ GL  GADDYI+KPF+  ELVARI+A++RR   
Sbjct: 63  ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  ++ L  +G  +++L AK V   G  I LT  EY +I  L   +   L+++  L+ 
Sbjct: 123 VKRKDSKRL-KSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDA 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + K +DV I +LR+K+ +      YIET+WG GY  R +
Sbjct: 182 VWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWRRH 228


>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
 gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F + +   GE+G+       FD IILD+ +  + G EV
Sbjct: 5   ILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  +
Sbjct: 65  VRIIR-EKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTKY 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     +  I  GDL ++    TV     ++ LT KE+++++L    +N   TK    N 
Sbjct: 124 SATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYNL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 184 IWSEEYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKL 227


>gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator
           [Rhodoferax ferrireducens T118]
 gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F V +   G DG+      ++D  ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  +R A    PV  LS    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +   +   DL ++L  + V   G RI LT KE+ ++ELL  R++  L + +  + ++
Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V + +LR K+ +    K  I TV G GYVL   A
Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKVDDNFEPK-LIRTVRGMGYVLESPA 225


>gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
 gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL EDD+ LA  +   L+ E + + V   G D + L +   +D +I D  +  + G ++
Sbjct: 5   ILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLSGLDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR + I TP+ +L+    I D+V GL +GADDY++KPF+ EEL+AR+ A +RR+R  
Sbjct: 65  CLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRRARRE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DLS+N   + V      I LT KE+ ++ELL       LT+E  L  ++   
Sbjct: 125 VVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E  +I+V+I  LR KL  A   K  I TV   GYVL+
Sbjct: 185 FMGESNVIEVYIRALRLKLE-ATNPKRLIHTVRSVGYVLK 223


>gi|319764313|ref|YP_004128250.1| transcriptional regulator domain-containing protein [Alicycliphilus
           denitrificans BC]
 gi|317118874|gb|ADV01363.1| transcriptional regulator domain-containing protein [Alicycliphilus
           denitrificans BC]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGF 60
           R L+IEDD   A  I   L+++     +     + +      ++D ++LD  L   + G 
Sbjct: 3   RCLVIEDDLENARYIADGLRAQGHVAVIAAEPGEALRRATAEDWDVVVLDRMLGPRVDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   + TPV +LS +S+++++VRGL++G DDY+ KPF   EL ARI A+VRRSR
Sbjct: 63  NILQTMRGLGLRTPVLVLSALSALDERVRGLKAGGDDYLGKPFAFSELAARIEALVRRSR 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    L+   DL ++L ++        I L  +E++++  L +     LT+ M L  ++
Sbjct: 123 AGEEARLLQMADLRLDLVSRQARRGARPIALKPREFRLLAYLMMHPEQVLTRTMLLEAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D R +P+  +IDV + +LR+K+  A G    I TV G GY L
Sbjct: 183 DYRFDPQTNLIDVQVSRLRQKV-QAPGEAPLIHTVRGVGYRL 223


>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 232

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  ++ + L +  + V     G   ++     + D ++LDLGL D+ G EV
Sbjct: 9   VLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGTEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  LR    + P+ +LS      DKV+ L +GADDY++KPF  +EL+AR+RA VRRS   
Sbjct: 69  IAGLR-GWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRSSVA 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A++++ TG  +++L AK V  +G  +HLT  E+ ++ELL   +   + ++  L+ +
Sbjct: 128 GTDGAEAVVDTGSFTIDLAAKKVLREGREVHLTKTEWGVLELLVRNRGRLVAQKQLLHEV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E E   + V++ +LR+KL        ++ T  G GY
Sbjct: 188 WGPSYETESHYLRVYLAQLRRKLEPEPSRPRHLLTEPGMGY 228


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 24/241 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ++A  + L L+ E ++  + + GE+ ++  +      IILDL L  I G+E
Sbjct: 6   KILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +  + P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RRS+ 
Sbjct: 66  VCRRIRTSS-NVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQ- 123

Query: 122 HAQS--------------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
           H  S                     I   DL +NL    V  +G  I +  KE +++  L
Sbjct: 124 HVFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFL 183

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   N   T+E  L+H++      + + +DV I +LR+KL      +  I TVWG GY  
Sbjct: 184 ASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKLPQVEEWE--ISTVWGIGYKF 241

Query: 222 R 222
           R
Sbjct: 242 R 242


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +   + +  D  +LD+ L D+ GF 
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 LIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+         I+T  G GYVLR   K
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 238


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G   + L +  E D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+      DKV+GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 71  VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSA 130

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++   DL ++ D+  V   GH + L+  E++++  L L     L+K   L+H+
Sbjct: 131 GLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENA 225
           +      +  I++ +I  LR+K   L++A G +    I T  G GY+LRE +
Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLLREPS 242


>gi|295133222|ref|YP_003583898.1| two component transcriptional regulator winged helix family
           [Zunongwangia profunda SM-A87]
 gi|294981237|gb|ADF51702.1| two component transcriptional regulator, winged helix family
           [Zunongwangia profunda SM-A87]
          Length = 225

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 125/219 (57%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   +++ L+S ++ V+     ++GI L   Y  D I+LD+GL D  G +
Sbjct: 5   KILIIDDEPQIRKLLQINLESNDYKVFEAGTAKEGILLAARYTPDLILLDIGLPDKNGHQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR    + P+ ILS   +  D V  L +GA DY++KPF   EL+ARIR+ +R S+ 
Sbjct: 65  VLQELR-QWFNNPILILSVQDNEADIVSALDNGATDYLTKPFRTGELLARIRSAIRNSQN 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++ TGD+S++  A+ ++V+ H I LT  EY+++ LL+  +   LT    L  ++ 
Sbjct: 124 TDNNAILTTGDISIDFVARIIKVREHIIKLTSTEYELLFLLARNEGKVLTHHYLLRKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + E + + VFI  LRKK+        +I T  G GY
Sbjct: 184 PSFQLETQYLRVFIGNLRKKIEANPNHPKHIITESGIGY 222


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + +        D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240


>gi|91790461|ref|YP_551413.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91699686|gb|ABE46515.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 132/235 (56%), Gaps = 15/235 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTD-LGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD  +A  +   L+   + V V D +    + LC    FD ++LDLGL+D  G
Sbjct: 10  MRILVVEDDAGIAAGLRTNLQQRGYAVDVCDTVASAWMALCS-EPFDLVLLDLGLSDGDG 68

Query: 60  FEVLRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
            ++L+ +R  K +        TPV I++    + D++ GL  GADDY+ KPF+ +EL AR
Sbjct: 69  GDLLQRIRQVKSADGRLPDPLTPVLIMTARDQVADRISGLNLGADDYLVKPFDLDELEAR 128

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +RA++RR+ G A  L+V G+L ++  A+TV   G  + L  +E+ ++ LL   +   L++
Sbjct: 129 MRALLRRAAGRAHPLLVHGELVIDPAARTVLRAGQAVELAPREFTLLLLLLESRGRVLSR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     LY+  D      ++V +  LR+KL     G+  I+T+ G GY + ++ +
Sbjct: 189 QQLEARLYNWEDAVGSNAVEVHVHHLRRKL-----GEGLIQTLRGVGYFIPQDDR 238


>gi|296315110|ref|ZP_06865051.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768]
 gi|296838023|gb|EFH21961.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G           +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R A  + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q  +  G +S+N      E+  +G ++ L+ KE+ +++ L  R    L++    + +
Sbjct: 121 GQGQVCLSNGVISLNPATYQAEIIAEGRQVALSNKEFAVLQALLARPGVILSRSDLEDKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
           Y   +E E   +D  I  LRKKL     GK  I+ V G G+++ R++A
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKESIQNVRGVGWLMPRQDA 223


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 121 GHAQSLIVTGDLS-VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+ +   V    + + LD +T EV   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 202 VWRYDFGGDVNVVESYVLYLRRKIDT--GEKRLLHTLRGVGYVLRE 245


>gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 219

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  ++     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ ++  K   PV IL+  SSIEDKV+GL  GA+DY++KPF   EL AR+R   RR  
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  G+++++  A +V +    + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK  +     ++I+T+ G GYV+
Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPS-----DFIKTLRGIGYVV 216


>gi|261340650|ref|ZP_05968508.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC
           35316]
 gi|288317064|gb|EFC56002.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH ++  L    F V   + G     L +   +   ILD+G+    G 
Sbjct: 1   MRLLLAEDNRELAHWLKKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    + PV  L+  S++ D+V+GL +GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q     G+L  + D     ++   + LT +E  ++++L  R+   ++++   + ++ 
Sbjct: 121 GRTQERQRLGELEYD-DEGFFLLRDEPLSLTPRELSLLKVLMHRRTRPVSRQQLFDQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+   + ID+++ +LRKKL+   G    I T+ G GYVL
Sbjct: 180 LNDDVSPESIDLYVHRLRKKLT---GSGVRITTLRGLGYVL 217


>gi|298251876|ref|ZP_06975679.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546468|gb|EFH80336.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 216

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ EDD A+   I + L+   F+      G    +L +   FD ++LD+ L  + G+
Sbjct: 1   MKILIAEDDVAINDLIHMNLRDTGFSCTCVFDGLSAADLLERDSFDLVLLDIMLPHVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R   +  PV I++  SSI DKV+GL+ GADDYI KPF   EL ARI AI+RR  
Sbjct: 61  ELLEYIR--PLGIPVIIITARSSITDKVKGLKQGADDYIVKPFAIVELTARIEAILRRYN 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L++  DL +N +++ V      + LT KEY+++ +L   KN  L +E     ++D
Sbjct: 119 KDKRMLVIE-DLEINTESRLVTKSSIPVELTLKEYELLVMLVRNKNIALFRETLFERIWD 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  + +D+ I +LR+KL    G ++ I+TV+  GY L
Sbjct: 178 SNVMGNTRTLDLHIQRLRRKL----GWEDKIKTVYKIGYRL 214


>gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 5/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           R L+IEDD   A  I   LK   +   V   G +G+EL    E+D IILD  L   + G 
Sbjct: 3   RCLIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR     TPV ILS +S+I+++VRGLQ+G +DY++KPF   EL AR+ A++R ++
Sbjct: 63  SILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQ 122

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + L V  DL VNL  ++VE  G  + L  +E++++  +   K   LT+ M L  +
Sbjct: 123 PNEVIRELCVE-DLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++ + +P+  +ID  I +LR K+         I T    GY+L  N + E  +
Sbjct: 182 WNYQFDPQTNVIDAHISRLRNKVDKGF-AVPLIHTRRNLGYILTPNPQTEPAD 233


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK ++  I + LKSE++ V     G + ++L K   FD +ILD+ +  + G E 
Sbjct: 5   ILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMDGLET 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L  +R    + P+  L+  +   D +RGL  GADDYISKPF+  EL+AR++A +RR    
Sbjct: 65  LIHIR-KDFNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTIF 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  G+L ++LD   V V G  + LT  EY+++EL    KN   + E    +++
Sbjct: 124 NNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIYENIW 183

Query: 180 DGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             RD+  V    I V I KLR+K+        YI+TVWG GY
Sbjct: 184 --RDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGY 223


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 10  KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 70  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 129 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 189 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 238


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|311279333|ref|YP_003941564.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308748528|gb|ADO48280.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 230

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED K  +  I   L   NF V V   G DG+      +++  ILD+ L  I G+
Sbjct: 1   MRILLVEDQKMASEYIAKGLTENNFVVDVAQNGVDGLHYLLTNDYNLAILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++   R A   TP+  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR R I+RR  
Sbjct: 61  KIIEMARQAGKQTPIMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARARVILRRQN 120

Query: 121 G-HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             HA S    ++   DL+++     V   G RI LT KE+ ++ LL  R    L++ +  
Sbjct: 121 PQHAPSADENILQVADLTLDFIKHRVTRSGVRIELTQKEFLLLRLLMRRSGEVLSRTVLA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D   +PE  +IDV I +LR K+ +    K  + T+ G GYVL
Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKIDDGFDDK-LLHTLRGAGYVL 225


>gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  +A  +   L      V     G +G+ +    ++D +ILD  L  + G 
Sbjct: 1   MHILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR +   TPV  LS +  ++D+V GL++G DDY+ KPF   EL AR+ A++RR  
Sbjct: 61  AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L  + V   G  I L  +E++++E L       +T+ M L  ++
Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         ++TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRGKIDKDF-DPPLLQTVRGAGYRLQ 222


>gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 231

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 130/231 (56%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++EDD   A+    M K+     +V D   DG+E     +  ++D +I+D  L  +
Sbjct: 5   MRILIVEDDSEAAN---YMAKAFREAGHVADHVGDGLEGYARAREEDYDVLIVDRMLPKL 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++  LR  K+ TPV ILS +  ++D+V+GL++G DDY+SKP+   EL+AR+  + R
Sbjct: 62  DGLSLIGGLRAQKVETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILAR 121

Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R +     +++   G L ++  A  V  +G  I L  +E++++E L       +T+ M L
Sbjct: 122 RKQNGTGEETVYRVGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++D   +P+  +IDV I +LR K+         ++T+ G GY++R+ ++
Sbjct: 182 ENVWDYHFDPQTNVIDVHISRLRSKIDKGF-EPPLLQTIRGAGYMIRDGSR 231


>gi|120553228|ref|YP_957579.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323077|gb|ABM17392.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 227

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  LA+++  ML+ +   V   D G+  +       FD  ILDL L  + G 
Sbjct: 1   MRILLTEDDHPLANTMLSMLRDDQNTVDWVDDGQQALNALLNESFDLAILDLTLPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R +R   +  P+ IL+  S + +K++GL +GADDY++KPF   EL ARIRA+ RR  
Sbjct: 61  DIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  G L ++ D+  ++V      L   E Q++  L    +   T+      LY 
Sbjct: 121 GTRVSGLKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                E   ++V +  LR++L     GK  I TV G GY+L   A  E  E
Sbjct: 181 WDQGAESNALEVHVHHLRRRL-----GKQAIRTVRGVGYMLDSKAASEGQE 226


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   ++V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  ++V  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226


>gi|264677272|ref|YP_003277178.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207784|gb|ACY31882.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+  L   +   L      V     GE    L +   FDA +LDLGL    G 
Sbjct: 1   MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R    S PV IL+  ++  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +L   G ++++     V V+G  + LT  E++++ LL  R    +++     H+Y 
Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   I+VF+ +LRKKL   +     IETV G GY L   +  E
Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRLAAPSNQE 223


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G + I      + D ++LD+ L D+ GF 
Sbjct: 12  RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+  L+     +DKV GL  G DDY++KPF+ EE+VARIRA++RR+ G
Sbjct: 72  VTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHG 131

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+    S +V  DL ++ D+  V      I L+  E++++  L L     ++K   L+H
Sbjct: 132 GAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDH 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D     EV I++ +I  LR+K+     G+  I T  G GYVLR
Sbjct: 192 VWDYDWSGEVGIVESYISYLRRKID--VIGEPMIHTKRGIGYVLR 234


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL ++DD  +   ++  L  E F V     GE+ ++  +    D +ILDL +  + GFE
Sbjct: 4   RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + L+ A+   P+ ILS  +   D+V G + G DDY +KPF+  EL  R++A++RR   
Sbjct: 64  TYQKLK-AQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + ++++  G+L+++   +TV V   ++ LT K+++++ L++   N   TK   L+ +
Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D     +   + V I +LR+K+        YI+TVWG GY
Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGY 223


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
 gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
          Length = 254

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I        D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   A  +  I TV G GY+LR 
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKID--ADREPMIHTVRGIGYMLRP 252


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   VKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           EVLR  R+ K+S  P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++ 
Sbjct: 62  EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ + 
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +       E  +IDV++  LR K+ +    K  I TV G GYV+++
Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225


>gi|167769067|ref|ZP_02441120.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
           17241]
 gi|167668707|gb|EDS12837.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+ ++       GE  I     +  + I+LDLGL D+ G EV
Sbjct: 6   ILVVEDDVPVRNLITTTLKAHDYRFLTAANGESAILEASSHNPEIILLDLGLPDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKVRTWS-NLPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAAI 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +A S+   G L V+  A    + G  +HLT  EY+++ LLS      LT     
Sbjct: 125 QAGGMANADSVFTNGKLKVDYAAGCAYMDGQELHLTPSEYKLLCLLSKNVGKVLTHTFIA 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++   + ++  + VF+  LRKKL        YI+T  G GY
Sbjct: 185 QQIWNRSWDNDIASLRVFMATLRKKLEKEPDSPQYIQTHIGVGY 228


>gi|157963744|ref|YP_001503778.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848744|gb|ABV89243.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 227

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L+  +  +L+ E F + +   G+ G++L    +FD I+LD+ L  + GFE
Sbjct: 3   RILLVDDDLGLSELLAQLLELEGFKLTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR +K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR+  
Sbjct: 63  VLRALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTHI 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q++   GD+ ++   + V  Q   I LTG E+ ++  L        +KE     
Sbjct: 122 QPSEAPQAIHQYGDIHLDPARQEVHCQDQLIILTGTEFSLLFELVKNAGELASKEALSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +  P  + +D+ +  LRKK+     G+  ++T+ G+GY+
Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKMPERDDGRPRVKTIRGKGYI 224


>gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
 gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
          Length = 257

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 151

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A    +SL V GDL ++  ++ V   G  I L+  E++++  L       L++   L+
Sbjct: 152 HLAPPADESLKV-GDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILD 210

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++        I+D++I  LRKK+   A  +  I TV G GY+LR 
Sbjct: 211 RVWNYDFAGRTSIVDLYISYLRKKID--ADREPMIHTVRGIGYMLRP 255


>gi|126699294|ref|YP_001088191.1| two-component response regulator [Clostridium difficile 630]
 gi|254975324|ref|ZP_05271796.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092715|ref|ZP_05322193.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255100819|ref|ZP_05329796.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255314453|ref|ZP_05356036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517130|ref|ZP_05384806.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650235|ref|ZP_05397137.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683353|ref|YP_003214638.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686948|ref|YP_003218081.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520214|ref|ZP_07406561.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115250731|emb|CAJ68555.1| Two-component response regulator [Clostridium difficile]
 gi|260209516|emb|CBA63087.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212964|emb|CBE04255.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  S+   L S++F     + GE+ + L     +D +ILDL L +I GF
Sbjct: 1   MKVLIVEDNKILLESVVEEL-SKHFETEKCEDGEEALYLVNQNIYDLVILDLMLPNINGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +RV  I TPV IL+   +++DKV     GA+DY++KPF  EELVAR+ AI+ R+ 
Sbjct: 60  DILKKMRVNNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +        S+ LD   K V ++   I L  K++ ++E   L K + L KE   + +
Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  ++I++V++  LRKKLS   G   YI+T    GY+ 
Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|319946950|ref|ZP_08021184.1| nisin biosynthesis regulatory protein NisR [Streptococcus australis
           ATCC 700641]
 gi|319746998|gb|EFV99257.1| nisin biosynthesis regulatory protein NisR [Streptococcus australis
           ATCC 700641]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 132/225 (58%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL I+DD+ +   I   LK+ NF+V      E+ I +C F  FD I+LD+ +  I G E
Sbjct: 4   KILAIDDDEKILRLIGNALKANNFHVETRKYIEE-INICDFTGFDLILLDV-MMPISGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +  ++R ++I+TP+  L+     ED ++G+Q+GADDYI+KPF+ +EL+ARI+  +RR   
Sbjct: 62  ICLSIR-SQIATPILFLTAKDFEEDLLKGIQAGADDYITKPFSIKELIARIQMHLRREER 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HA    +  +++ N D + V  Q  RI LT +E+ ++ LL+  +N   + E   N+LY
Sbjct: 121 SHHASKEEMDSNITFNRDRQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +++ I  +I ++R+K        + I+TVWG GY  ++N
Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V 
Sbjct: 1   MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R   
Sbjct: 61  RRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQV 120

Query: 124 Q--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++  
Sbjct: 121 EDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222
               +  I++ +I  LRKK+ +       G  +     IET  G GY++R
Sbjct: 181 DWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIR 230


>gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+ +    +  I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKI-DMPFAQPLIQTKRGMGYYL 221


>gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 235

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 129/227 (56%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           +LLI+DD+AL   ++  L ++ + ++V   GE G+   K  + +D IILD+ L  + GFE
Sbjct: 6   LLLIDDDQALTELLQEYLSAQGYTIHVASDGEAGLLAAKSGQHYDLIILDVMLPKVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR   + TPV +L+      D++ GL+ GADDY++KPFN  EL AR++AIVRR   
Sbjct: 66  VLKRLRSTHV-TPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVDI 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    Q+ I  GD+ +N+ A+TV     ++ LTG E+ +++LL       + K+ 
Sbjct: 125 QAGLQSDKQKQNTIEIGDVELNIAAQTVACNAQQVELTGTEFAVLKLLMSCSPDLVPKQA 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +   +     + ID+ +  LRKKLS+ +   + I+T  G GYV
Sbjct: 185 ISEQVLGRKLAAFDRSIDMHVSNLRKKLSHFS-DHDKIKTHRGVGYV 230


>gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +   ++L L+ ENF V  T  G D I   +   FD IILD+ L +I GF
Sbjct: 1   MRILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R+  +  PV  L+   ++ D++ GL+ GADDY++KPF  EEL+ RI  +++R+ 
Sbjct: 61  QICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKRTS 120

Query: 121 GHAQSLIVTGDLSVN-LDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++     +   N ++  T E +G   +  LT KE  +++LL  R+N  ++++  L  
Sbjct: 121 KSPENTPEIFEFGSNRINFITFEAEGILGKFILTKKEAMLLKLLIDRRNEVVSRQQILQS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     P  + ID FI K R+     +    +  ++ G GY
Sbjct: 181 VWGYDVYPSTRTIDNFILKFRRNFEGDSKNPRHFHSIRGVGY 222


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+ +ILDLGL  + G 
Sbjct: 1   MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++   + V  QG  I+L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ E   ++V I  LRKK          I TV G GY++
Sbjct: 181 WDEDVESNALEVHIHHLRKKFF-----PELIRTVRGVGYLV 216


>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 276

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G E
Sbjct: 54  RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A     V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R 
Sbjct: 114 VCRRVR-AFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 172

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ +
Sbjct: 173 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 232

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + +++DV I  LR+KL   A    YI+TV G GY + E 
Sbjct: 233 WDPAWVGDERLVDVHIKNLRRKLD--ADPARYIDTVRGVGYRMAEQ 276


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D++A+   + + L+ E F+V+    G+  +        D ++LD+ L DI GF
Sbjct: 18  LKVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPDIDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +    P   L+   + EDKV GL  G DDY++KPF   ELVAR+RAI+RR+ 
Sbjct: 78  MLCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRA- 136

Query: 121 GHAQSLIVTGDL---SVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A S    G L    + LD +T EV+  G  + LT  EY+++  L       LT+   L
Sbjct: 137 GAADS--TPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLL 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      E ++++ ++  LR+K+       + I TV G GYVLR
Sbjct: 195 DHVWGHDFGGEARVLETYVSYLRRKIDPVP--PSLIHTVRGVGYVLR 239


>gi|262369887|ref|ZP_06063214.1| response regulator [Acinetobacter johnsonii SH046]
 gi|262374252|ref|ZP_06067528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310810|gb|EEY91898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262314926|gb|EEY95966.1| response regulator [Acinetobacter johnsonii SH046]
          Length = 237

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 125/218 (57%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +++ L+++ +   + + G+ G+EL      D +ILDLGL D+ G+EV
Sbjct: 14  VLIIDDENQIRKFLDIALRAQGYKTLLAENGQKGLELLALQGADLVILDLGLPDLDGYEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR      PV +LS  ++ E+KV+ L +GA+DY++KPF+ +ELVARIR ++R+ +  
Sbjct: 74  LSELRTWS-HVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELVARIRVLLRQHQHS 132

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++  D  L ++   + V +    + LT KEYQ++ LL+  K   +T+   L  L+ 
Sbjct: 133 TVDTVIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELWG 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL++ A    YI T  G G
Sbjct: 193 PTHQEDTHYLRILVAKLRVKLNDNAVQPKYIITEPGVG 230


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +   +   L S  + V+    G + I++ K    D ++LD+ +  + G 
Sbjct: 1   MNILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+   + +D+V GL+ GADDY+ KPF+ +EL+ARI A +RRS+
Sbjct: 61  EAAQEIRTFS-DVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G+        +I   +L+V+L    V+V G  ++LT KE+ ++ LL   +    ++E  L
Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++    E   + +D  I  LR KL  AAG  +Y++TVWG GY
Sbjct: 180 DQIWGFESEGTARTVDTHIKTLRLKLK-AAG--SYVQTVWGVGY 220


>gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 12/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +A S+   L    F V     G     L     +D ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDEPVAQSLRRGLIRYGFEVEWVSTG--AAALGHEGPYDVVLLDLGLPDTDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RALR  +   P+ ++S  S   D+V GL+ GADDY++KPF   E++ARIRA++RR++
Sbjct: 59  DVCRALR-ERGDVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQ 117

Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      D     LS++  A  V + G  + L  KEY ++  L+      +++E  +
Sbjct: 118 PRTEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIM 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D       K +DV +  LR+KL+ A      IE V G G+ L
Sbjct: 178 EAVWDANWFGPTKTLDVHVAALRRKLAGAV----VIEAVRGVGFRL 219


>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 232

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F V     G + +  L    + D  +LD+ +  + GF
Sbjct: 3   KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H    A+    +G  +++L AK  +  G  I LT  E+ +I+    ++NT L++++ L+
Sbjct: 123 VHRETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H++      + KI+DV I +LR+K+ N      +++TVWG GY
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGY 225


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   LK E F   V D GE+ + L     +D  +LD+ L  + G+E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +K + PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I    ++++ DA T   +   I LT +E++++  L       +++E  L  
Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +      E K +D  I +LR K+  A      +ETV G GY  R+
Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRFRQ 231


>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 228

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +A +I   L+   ++  V   G  G  L    +++ IILD+ L DI G+E
Sbjct: 3   RILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPDISGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R    + P+ +L+ M  IEDK+ GL+ GADDYI KPF+  EL AR+    RRS  
Sbjct: 63  ICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSDL 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++   DL++N+ +K V      I LT KE+ ++E L   +   ++K      
Sbjct: 123 LISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++   +P   +++V+I  LRKK+      K  I T  G GY L+ +
Sbjct: 183 VWNFNFDPGTNVVEVYINYLRKKIDKEFDVK-LIHTRPGLGYTLKAD 228


>gi|170720861|ref|YP_001748549.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169758864|gb|ACA72180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELVADGETGQHLALSGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q + +   DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQETQLALADLRLDLFRRRAERAGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDPHRNK-LIHTVRGMGYVLEER 224


>gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48]
 gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  + G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI  G L ++L  ++V  +G  + L+  EY ++ +L+      ++++  L  L
Sbjct: 124 EPRLDSDLIQVGGLRIDLAERSVSWRGEEVELSSGEYNLLVVLARNAGEVMSRDRILQQL 183

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++G D    + +DV I KLR++  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTD----RSVDVAISKLRRRFDDNAGEARKIKTVWGKGYLF 226


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF++
Sbjct: 1   MLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR + I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  GH
Sbjct: 61  LEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGH 120

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++ 
Sbjct: 121 VEEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDD 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +N ++        + +DV +  LRKKL        +I+++ G GY L  N K
Sbjct: 181 LMNVVWGFDYIGGQRTVDVHVSSLRKKLE-LDPESVHIDSIRGVGYKLVVNPK 232


>gi|299530817|ref|ZP_07044232.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298721333|gb|EFI62275.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+  L   +   L      V     GE    L +   FDA +LDLGL    G 
Sbjct: 1   MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R    S PV IL+  ++  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRAWRTQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +L   G ++++     V V+G  + LT  E++++ LL  R    +++     H+Y 
Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   I+VF+ +LRKKL   +     IETV G GY L   +  E
Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLAAPSNQE 223


>gi|295108867|emb|CBL22820.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK+ ++     + G   I     +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDRPIRNLIITALKTHDYKYLEAENGTSAILEASSHNPDIVLLDLGLPDIEGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R+   + P+ ++S  +   DK+  L +GADDYI+KPF+ EEL+ARIR   RR    
Sbjct: 66  IKKIRMWS-NMPIIVISARNEDMDKIEALDAGADDYITKPFSVEELLARIRVTQRRLALI 124

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G  Q  S+   G+L ++  A    ++G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QTGEMQEESIFTNGELKIDYTAGCTYLRGEELHLTPIEYKLLCLLSRNVGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKKL       +YI+T  G GY
Sbjct: 185 QIWRRSSENDVASLRVFMATLRKKLETEKSDVSYIQTHVGIGY 227


>gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
 gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
           29799]
          Length = 248

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  L  ++E+ LK       +   GEDG+       +D I+LD  L  + G 
Sbjct: 24  LHILMVEDDADLCGAVEIHLKKAGHTADMAYDGEDGLHFALQNAYDLILLDRMLPGMDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR A I+ PV +++ +  + D+V GL +GADDY++KPF  EEL+ARIRA+ RR  
Sbjct: 84  ELVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRALSRRPV 143

Query: 121 GHAQSLIVTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS  ++    + LD K  T++  G    L+ +E +++E+       T+T+E+ L  +
Sbjct: 144 QWEQSSALS-RWGLELDVKLCTLQGPGGSCSLSKRESRLLEIFLRNAGQTMTRELLLARV 202

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G D P E   +D +I  LR++LS A G    I T  G GY L E A
Sbjct: 203 W-GPDAPVEEGNLDNYIHFLRRRLS-AVGSGARIVTARGVGYRLEEGA 248


>gi|332975039|gb|EGK11946.1| two component response regulator [Psychrobacter sp. 1501(2011)]
          Length = 227

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTD--LGEDGIELCKFYEFDAIILDLGLTDIP 58
           R+LLIEDD  +A  + L LK+    V + +D  LGE  ++   F   DA++LDL L +  
Sbjct: 3   RVLLIEDDSTIAEGLILGLKNHGIMVDWFSDAKLGELALQESMF---DAVLLDLTLPNGD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VL++ R  KI TPV I++   +I ++V GL +GADDY+ KPF  +E++AR++A++RR
Sbjct: 60  GMSVLKSWRDKKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+G     I  G+L     ++ V  QG  I LT KE  ++E +  +      +    + L
Sbjct: 120 SQGRIYPEIRFGELVYYPHSQQVTYQGQSIDLTTKEVAILEQMMTQPQKIHNRASLEDKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           Y  + + E   I+V I  LRKKL N     ++I T  G GY L  + +    +
Sbjct: 180 YGWQQDIESNAIEVHIHHLRKKLGN-----DFILTKRGIGYYLNPSYQHSPAQ 227


>gi|126732451|ref|ZP_01748250.1| two-component system regulatory protein [Sagittula stellata E-37]
 gi|126707090|gb|EBA06157.1| two-component system regulatory protein [Sagittula stellata E-37]
          Length = 233

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   +A +I          V   +  ED +      ++D IILD+GL D  G 
Sbjct: 11  MRLLLVEDTADVADAIVASFGHRGDAVDHVNSVEDALGALAVQDYDVIILDIGLPDGLGT 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR     TPV +L+  S+IED+V  L  GADDY+ KPF+  EL AR+RA++RR  
Sbjct: 71  DILSSLRSRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRRQD 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GD++ +    TVEV+G  + L  +E+ ++E+L   +   + K+  L  +Y 
Sbjct: 131 VDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERMYA 190

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE      +++++ +LRKKL N+   +  I+T+ G GY L
Sbjct: 191 FNDEDVSPNAVELYVGRLRKKLCNS---QITIKTLRGLGYQL 229


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  +   L+   + V     G   ++L    ++D ++LD  L D+ G 
Sbjct: 1   MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K   PV ILS   +++D+V+GL+ GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L V+ DL+++   + V      I L  KE+ ++E +   K   L++ M + H++D
Sbjct: 121 PTPERLQVS-DLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    I+DV+I  LR K+ +    K  I+TV G GY++    K
Sbjct: 180 MDYDGLTNIVDVYIRHLRSKIDDRFQQK-LIQTVRGIGYMIEAPDK 224


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 9   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 69  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 127

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 128 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 188 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 237


>gi|227536801|ref|ZP_03966850.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243357|gb|EEI93372.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 224

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  LA SI   L  + +        +   E    +++D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEYELAKSIADYLGQQGYLCEFASTFQMAQEKIAGFDYDCILLDIMLPDGNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ L+  +    V I+S   +++DK++GLQ GADDY++KPF+  ELVARI A++RR +
Sbjct: 61  HVLQTLKEQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYAVIRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
               ++I+  +L ++L AKTV V  H +  T KE  ++      KN  ++K     HL  
Sbjct: 121 FQNSNIIIQNELQIDLLAKTVSVGDHVVPFTKKELDLLLYFIGNKNKVISKSTLAEHLSG 180

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  D  +   +   I  L+KKL +A  G +Y++T++G GY
Sbjct: 181 DVADMLDNHD--FVYAHIKNLKKKLQDAHSG-SYLKTIYGSGY 220


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F+V     G + +E     E D ++LD+ L D+ GF 
Sbjct: 13  RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   + TPV  L+    + D V GL  G DDY++KPF+ EE+VARIRA++RRS+ 
Sbjct: 73  VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQA 132

Query: 122 H-AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H A S ++   DL ++ DA+ V   G  + L+  E++++  L L     L+K   L+H++
Sbjct: 133 HDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKL----SNAAGGKNYIETVWGRGYVLR 222
           +     E  I++ +I  LR+K+     + A     I T  G GYVL+
Sbjct: 193 EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVLK 239


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++I+D   +   +   L+ E ++V   +  E  ++  K  + D  I+D+ L ++ GFE 
Sbjct: 6   IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +R +R       TPV  LS      DKV GL+ GADDYI KPF+  EL+ARIRA+ RR  
Sbjct: 66  VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +      IV  DL +++D   V V+G ++ LT  E+ ++  L+  +    ++++ 
Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+ +      Y+ TV G+GY  R+  K+E
Sbjct: 186 LDKLWGYDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKFRDPGKEE 239


>gi|113970165|ref|YP_733958.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114047645|ref|YP_738195.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113884849|gb|ABI38901.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889087|gb|ABI43138.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 219

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V      +  +   K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKLGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G LS++L+ + V  +   + L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDNNSLNIGALSIDLNTREVTFRDQNVPLSRREFQLLLELAQSAGRVLTRSQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKK++N       I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKMAN-----ELIKTVRGIGYTLTE 217


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   ++  L+   ++      GE+G+++ +    D I+LD+ L  + GF 
Sbjct: 3   RILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   ++TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 63  VLRILR-QTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G   S +++   L+++L    VE  G  I LT +E+ +++ L   +    ++EM L  
Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +V+ +DV I +LR+K+ +      YI T  G GY   E ++
Sbjct: 182 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 230


>gi|161614534|ref|YP_001588499.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|238910949|ref|ZP_04654786.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|161363898|gb|ABX67666.1| hypothetical protein SPAB_02283 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322616607|gb|EFY13516.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619878|gb|EFY16752.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622446|gb|EFY19291.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629436|gb|EFY26213.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632932|gb|EFY29675.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636823|gb|EFY33526.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322641377|gb|EFY38016.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322645142|gb|EFY41671.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322652305|gb|EFY48661.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655657|gb|EFY51959.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322660962|gb|EFY57192.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665452|gb|EFY61640.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667571|gb|EFY63732.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322677561|gb|EFY73625.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679774|gb|EFY75813.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|323193061|gb|EFZ78283.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199442|gb|EFZ84535.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323203630|gb|EFZ88652.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208829|gb|EFZ93767.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323209871|gb|EFZ94787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323217803|gb|EGA02518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323226634|gb|EGA10834.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229606|gb|EGA13729.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323232831|gb|EGA16927.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240133|gb|EGA24177.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323254304|gb|EGA38121.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255570|gb|EGA39329.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323267000|gb|EGA50485.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323272104|gb|EGA55518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 223

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220


>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L++E F V     G +G+   +  ++D I+LD+ L  + G+
Sbjct: 1   MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A +  P+ +L+      D+   L  GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  DVCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDL+++   + V   G  I LT +E+ ++  L       L+K   +  ++D
Sbjct: 121 PKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V++  LR+K+     G   I+T+ G GY L
Sbjct: 181 LNYDGDENVVEVYVGYLRRKIDQPF-GTTTIQTMRGAGYRL 220


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G  G++     ++D +ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKRVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A  LI    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|330818213|ref|YP_004361918.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327370606|gb|AEA61962.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 225

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LAH + + L  + F +     GE   +  +   +D ++LDL L  + G 
Sbjct: 1   MRLLLVEDNEELAHWLAMTLTDDGFMLDRVSSGEAAEDALRASAYDVVLLDLNLPGMSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R    +TPV IL+   ++++KV  L +GADDYI KPF+  ELVARI+ + RR  
Sbjct: 61  TVLRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G+L  ++D     V    + LT +E+ ++E L LR   T++K      +  
Sbjct: 121 PSRSNRLRCGNLVYDMDRLQFAVDDVPLVLTPREHAVLEALILRAKKTVSKTTLAESVSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                    I++++ +LRKKL  ++     I T+ G GY+L + A DE
Sbjct: 181 ADAPTSEDAIEIYVSRLRKKLEASSA---TIITLRGLGYLLEDGAADE 225


>gi|58580728|ref|YP_199744.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425322|gb|AAW74359.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 297

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 65  MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 124

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 125 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 184

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A T+ + G  I L  +EY++ ++L  R    + K+   N L+ 
Sbjct: 185 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 244

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 245 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 284


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + S PV +L+   +  DKV GL+ GADDY++KP++  ELVAR+RA++RR +G
Sbjct: 63  VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + LI      G + ++++   V V G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 EPEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGY 222


>gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +       +   G++ + L     +D +++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   ++ PV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125

Query: 121 -GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQS  ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-ENGLPDPIKTIRGFGYVIQE 229


>gi|16764586|ref|NP_460201.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56413783|ref|YP_150858.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|168239138|ref|ZP_02664196.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194444063|ref|YP_002040487.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194448565|ref|YP_002045233.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194471531|ref|ZP_03077515.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736162|ref|YP_002114238.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195874180|ref|ZP_02701035.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197251572|ref|YP_002146810.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197261891|ref|ZP_03161965.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197362706|ref|YP_002142343.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198244282|ref|YP_002215904.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390596|ref|ZP_03217207.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930765|ref|ZP_03221638.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205357417|ref|ZP_02347547.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205357746|ref|ZP_02573078.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358670|ref|ZP_02658171.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205359350|ref|ZP_02669237.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205360059|ref|ZP_02834338.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205360758|ref|ZP_02686229.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|207857262|ref|YP_002243913.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224584261|ref|YP_002638059.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|130127|sp|P14146|PHOP_SALTY RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|73621400|sp|Q5PMJ1|PHOP_SALPA RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|154264|gb|AAA27187.1| PhoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|154266|gb|AAA27188.1| phoP protein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|7007369|emb|CAB75591.1| PhoP protein [Salmonella typhimurium]
 gi|16419749|gb|AAL20160.1| response regulator in two-component regulatory system with PhoQ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56128040|gb|AAV77546.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194402726|gb|ACF62948.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406869|gb|ACF67088.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457895|gb|EDX46734.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711664|gb|ACF90885.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630373|gb|EDX48999.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094183|emb|CAR59687.1| transcriptional regulatory protein PhoP,regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197215275|gb|ACH52672.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240146|gb|EDY22766.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288154|gb|EDY27541.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938798|gb|ACH76131.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603041|gb|EDZ01587.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320224|gb|EDZ05428.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205321841|gb|EDZ09680.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329802|gb|EDZ16566.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332740|gb|EDZ19504.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336749|gb|EDZ23513.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341203|gb|EDZ27967.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205347225|gb|EDZ33856.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709065|emb|CAR33398.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|219523857|gb|ACL14891.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523864|gb|ACL14894.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|219523866|gb|ACL14895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Paratyphi A]
 gi|219523868|gb|ACL14896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
 gi|224468788|gb|ACN46618.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246443|emb|CBG24253.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993010|gb|ACY87895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301157772|emb|CBW17265.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312912219|dbj|BAJ36193.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320086328|emb|CBY96101.1| Response regulator mprA Mycobacterial persistence regulator A
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223849|gb|EFX48912.1| Transcriptional regulatory protein PhoP [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322673635|gb|EFY69737.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322687247|gb|EFY83219.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323129501|gb|ADX16931.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323218886|gb|EGA03397.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323242880|gb|EGA26901.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246796|gb|EGA30766.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323259404|gb|EGA43040.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|326623652|gb|EGE29997.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332988122|gb|AEF07105.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 220


>gi|332715573|ref|YP_004443039.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325062258|gb|ADY65948.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+K +A ++   L  +   +  T    D +EL + + +DAI+LD  L D  G 
Sbjct: 1   MRLLLIEDEKEMADALSTTLGKQGIVIDHTMRLGDAMELARQHVYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR A I TP+ +L+ M+  E+++ GL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  TFIPKLRRAGIDTPIILLTAMNEPEERIEGLNGGADDYLGKPFLVGELLARLRAVLRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G + ++    +V +      L  +E  ++  L+ RK  ++ +      +Y+
Sbjct: 121 SIAPSQIAAGRIVIDPLHLSVTINSLPFDLPRRELMVLITLAKRKGKSVLRSTLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E +   +D  I +LRK+L +A+ G + +  + G GY+LRE+
Sbjct: 181 YEEEIQSNALDAHISRLRKRLLDASAGVS-VHNIRGIGYLLRED 223


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++  L  E F+ ++ +  E G+++ +  + D +ILD+ L D  G+E
Sbjct: 5   KVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  +   P+  LS      DK+ GL+ GADDYI+KPF+  E+VARI+A++RR   
Sbjct: 65  FCQKIR-PEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNK 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A++  +I  G+L +N +   V  QG +I LT KE+ ++  L+        +E  L  ++
Sbjct: 124 AAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +V+ +D  I  LRKKL + A     +ETVWG GY
Sbjct: 184 GYDYYGDVRTVDTHIKSLRKKLGDKAA--EAVETVWGVGY 221


>gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L S+ + +      +  IEL +  + D ++LDLGL  + G 
Sbjct: 6   VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGLPGMSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+LR  R   +  PV ILS  +     V  L+ GADDY++KPF   ELVARIR  +R   
Sbjct: 66  ELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +  TGDLSV+L  + V+V+G  + L+ KEY+++ +L       LT    L  +
Sbjct: 126 QQQGEKPVFQTGDLSVDLVKRVVKVEGKEVKLSPKEYEILRMLVQHAGKVLTHHFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   D  +V+ + V++ +LR+K+        YI T  G GY LRE
Sbjct: 186 WG--DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRE 228


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F+    + G + + + +  + D ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  ++R A+  TP+ +L+  S   D V+GL+SGADDY+ KPFN +ELVARIR  +R +  
Sbjct: 64  VCSSIR-AESGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+ L + GDL V++    V     RI LT  E+ ++  L+ +     T+EM L  ++
Sbjct: 123 APPAEQLCI-GDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + + ++++V + +LR K+         + TV G GY
Sbjct: 182 GYHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGY 221


>gi|76788510|ref|YP_330411.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909]
 gi|76563567|gb|ABA46151.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K++A +I+ +L  + ++V +   G+DG+E      +D ++LD+ L    G 
Sbjct: 1   MRLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R A + TP+  L+  S   DKV GL  GADDYI+KPF  +EL+ARIR   R+S 
Sbjct: 61  SILKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G++ +N D+  +E +   + L+ KE+ ++E+        + K   ++ ++ 
Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D  E   ++VFI  LRKKL         I T  G GY L E
Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEII-TTKGFGYSLEE 222


>gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDLSSTDDSVITHGDLTLNPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227


>gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
 gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL+ +DD+ +   + + L +E ++V     G   +   K    +E   IILD+ +  +
Sbjct: 1   MRILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VL  LR A   TPV +LS  SS +DK++GL SGADDY++KPFN  E++AR+++I+R
Sbjct: 61  DGMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILR 120

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTK 171
           R   + +      +I  G L +   +  V+    + I LT  E+ ++ LL+   N   + 
Sbjct: 121 RQSTYQKEVAEPDVIEIGPLIIRRASHEVKTLTDKDIQLTALEFGILYLLASHPNQVFSA 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E     +++       K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 181 EEIFEAVWNQESIVSAKTVMVHVSHLRDKIEAATEGERVIQTVWGVGY 228


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +  + G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227


>gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
 gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           sphaericus C3-41]
          Length = 234

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD A+A+ I++ L ++++   +   G   ++     + D  ILDLGL DI G E
Sbjct: 4   RILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAITMKPDVYILDLGLPDIDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           ++  +R +   TP+ ++S      DK+  L +GADDY++KPF+ EEL+ARIR  +RR+  
Sbjct: 64  LITKIR-SWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRRAAY 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    G L +N   +TV V G  IH+T  EY+++ +LS      LT    L 
Sbjct: 123 EYPPEQENATFTNGYLQINYVDQTVLVNGKEIHVTPIEYKLLVVLSKHVGKVLTHNFILK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++    + ++  + VF+  LRKK+ +       I+T    GY +    +DE
Sbjct: 183 EIWHNALQSDIPSLRVFMATLRKKIEDDPAQPKLIQTHVRVGYRMLRYHEDE 234


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L+   F V     G +G +  +  + D IILDL L  + G +
Sbjct: 4   KVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR+ KI+TP+ +L+  S   DK+ GL+ GADDYI+KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       I  GDL +  +      +  ++ LT KE++++  L+      L+++  LN 
Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     + +I+DV I  LR+K+        YI+TV G GY
Sbjct: 184 VWNFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGY 225


>gi|121594313|ref|YP_986209.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|222110947|ref|YP_002553211.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|120606393|gb|ABM42133.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221730391|gb|ACM33211.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+AL+ ++   L+++ F V             +  ++ A++LDL L D  G 
Sbjct: 1   MRVLLVEDDEALSEAVCGYLRAKAFVVDAVPSLAQAGAALRAAQYAAVLLDLHLADGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  K    V +L+    + D++ GL +GADDY+ KP++  EL+AR+RA+ RR  
Sbjct: 61  SLLPQIRALKDRPIVIVLTARDQVSDRIAGLDAGADDYLVKPYDPGELLARLRAVERRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++L  + V   G  I LT KE+ ++ +++ R     T+E   + LY 
Sbjct: 121 AAYVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALLRVMATRPERIHTRESLQDALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE +   ++VFI +LR+KL     G+ +IET+ G GY L
Sbjct: 181 FDDEADSNTLEVFISRLRRKL-----GREHIETLRGLGYRL 216


>gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG]
 gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKNKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 121 -GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQ+  ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLSDPIKTIRGFGYVIQE 229


>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A  STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 16  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 76  VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 196 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 233


>gi|257889529|ref|ZP_05669182.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260559821|ref|ZP_05832000.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|257825889|gb|EEV52515.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260074045|gb|EEW62368.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++EDDK L+++I+ +L +      V D G +G+   +   +D  ILDL + ++ G+
Sbjct: 2   IKLLVVEDDKVLSNNIKEILAAIGEITQVYD-GSEGLFELESGVYDLAILDLMMPEMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  KI  PV IL+   S+EDK+ G + GADDY++KPF +EEL+ R++A+++RS 
Sbjct: 61  EVLAKIRKEKIQPPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSL 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++++   D+S +L +  V  +   + + GKE++++      K   LTKE   + ++
Sbjct: 121 GLFDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + +I+V++  LRK L +    K  I+T+   GY+L+
Sbjct: 181 GFDSDTTITVIEVYMSNLRKHLRSTGLDKE-IKTLRNVGYILQ 222


>gi|162147449|ref|YP_001601910.1| two component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786026|emb|CAP55608.1| putative two component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 277

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 5/200 (2%)

Query: 27  VYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIE 85
           V +T  G +G +E  +   +D  ++  G    P   +LR +R +++ TPV I++  ++  
Sbjct: 41  VSITMSGPEGSVETLRRSHYDLAVIQQGS---PNARLLRRIRSSRVPTPVIIIARDTTPP 97

Query: 86  DKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG 145
                L  GADD +    +  EL+AR+RAIVRR+ GH    +  G L+VN++ + V + G
Sbjct: 98  AIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRLTVNVNQREVHIDG 157

Query: 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA 205
             + LT +EY ++ELL+LRKN  L+KE  L+ LY G+ EP  K+IDV ICK+RKK+    
Sbjct: 158 KPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEPSGKVIDVMICKIRKKM-RGL 216

Query: 206 GGKNYIETVWGRGYVLRENA 225
           G +  + T WG GY L E+A
Sbjct: 217 GIEEPLTTQWGIGYRLNEDA 236


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   VKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           EVLR  R+ K+S  P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++ 
Sbjct: 62  EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ + 
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +       E  +IDV++  LR K+ +    K  I TV G GYV+++
Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225


>gi|223983580|ref|ZP_03633761.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM
           12042]
 gi|223964425|gb|EEF68756.1| hypothetical protein HOLDEFILI_01042 [Holdemania filiformis DSM
           12042]
          Length = 258

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+ + I   L ++++       GE G++     + D ++LDLGL D  G  +
Sbjct: 6   ILIVEDDKAVRNLIAATLDTQDYRYLTAGTGEQGLQEATLRQPDIVLLDLGLPDGDGVSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R   +  P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R  +RR    
Sbjct: 66  IRRIRTWSL-MPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARVRVTLRRLRYI 124

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +A+S + T G+L+V+  +  V ++G  +HLT  EY+++ LL+      LT    L  
Sbjct: 125 QNQNAESPVFTNGELTVDYSSGCVYLRGQELHLTPSEYKLLCLLARNVGKVLTHTAILKE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228
           ++    + +V  + VF+  LRKKL    G   YI+T  G GY +LR    DE
Sbjct: 185 IWGSTLDSDVASLRVFMTTLRKKLEKGPGSFQYIQTHVGVGYRMLRVEPSDE 236


>gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232


>gi|209545558|ref|YP_002277787.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533235|gb|ACI53172.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 266

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/200 (38%), Positives = 118/200 (59%), Gaps = 5/200 (2%)

Query: 27  VYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIE 85
           V +T  G +G +E  +   +D  ++  G    P   +LR +R +++ TPV I++  ++  
Sbjct: 30  VSITMSGPEGSVETLRRSHYDLAVIQQGS---PNARLLRRIRSSRVPTPVIIIARDTTPP 86

Query: 86  DKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQG 145
                L  GADD +    +  EL+AR+RAIVRR+ GH    +  G L+VN++ + V + G
Sbjct: 87  AIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRLTVNVNQREVHIDG 146

Query: 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA 205
             + LT +EY ++ELL+LRKN  L+KE  L+ LY G+ EP  K+IDV ICK+RKK+    
Sbjct: 147 KPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEPSGKVIDVMICKIRKKM-RGL 205

Query: 206 GGKNYIETVWGRGYVLRENA 225
           G +  + T WG GY L E+A
Sbjct: 206 GIEEPLTTQWGIGYRLNEDA 225


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 39  RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 99  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 158 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 255


>gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   ++  L    + V +   GEDG  L +   +DA+ILDLGL  + G 
Sbjct: 1   MRLLVVEDDPDLGRQLKTSLSEAGYAVDLAVDGEDGHYLGETEPYDAVILDLGLPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      +KV G  +GADDY++KPF  EEL+AR+RA++RRS 
Sbjct: 61  RVLEKWRAEGKVMPVLILTARDRWSEKVAGFDAGADDYLTKPFITEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  GDL V+  +    V G  I LT  EY+++  +   +   + +   + H+YD
Sbjct: 121 GHASSALELGDLRVDTSSARATVGGQPIKLTAHEYRVLSYMMHYQGRVVPRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   I+VF+ +LRKK+     G + I T  G GY L + A +E
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GSDRILTERGLGYRLVDPAANE 223


>gi|268316385|ref|YP_003290104.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333919|gb|ACY47716.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 246

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 127/238 (53%), Gaps = 6/238 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGFE 61
           +L++EDD  +A +++   + + + V         +EL    + FD ++LD+ L D  GFE
Sbjct: 10  MLIVEDDADVAQALQDFFELQGYRVTHAPEAHKALELLTNAHRFDVVLLDVMLPDRSGFE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R   + TPV +L+G    E  ++G   GADDYI KPF+ +E+ AR+RAI++R++ 
Sbjct: 70  VLQEMRRRGLETPVLVLTGRGEREQVLQGFGLGADDYIVKPFDPDEVAARVRAILQRTQP 129

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++   +   GD+ +N           RI+ T  E  ++  L   +   +T+E  L  +
Sbjct: 130 PDRAPMQIYHIGDVEINFSTHEAYRGSERINFTAMELNVLRYLIHHRGEVVTREQLLRDV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           +    + E + ID  I  +RKK+        YIETV+G+GY LR  A+D++     T+
Sbjct: 190 WHIVGDVETRTIDRHIASIRKKIEPDLRQPRYIETVYGKGYRLR--AEDQSTNSPPTS 245


>gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
 gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
          Length = 218

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 126/219 (57%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  +++ +L+   + V     GE+ ++     E+D IILD+ L  I G+
Sbjct: 1   MKILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R   I+TP+ +L+    +EDKV+GL  GADDY+ KPF  +EL+AR+RA++RR+ 
Sbjct: 61  QVCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+  ++L+ + V+  G ++ +T K + ++E L   +   +T E  +N  +D
Sbjct: 121 AEKSNIIKIGEFVIDLNRREVKKNGTKLMITPKLFCILEQLLRNRGKVVTYETLMNKCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D P  + +   I  LRK L +    ++ I  V G GY
Sbjct: 181 INDYPTRETVRANIKLLRKILQD----RDIIHNVSGVGY 215


>gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+  +A  IE  LKS  F           + L    EFD +ILDLGL D  G EV
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGLPDRDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           L  LR      P+ IL+    I+DK+ GL+ GADDY++KPF  EEL+AR+R  +R +  +
Sbjct: 64  LADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNIHQ 123

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q L +V  ++ ++L A+  +V    I L  +E+ + E         L+++  L+ ++
Sbjct: 124 STSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   I+DV++  LRKKL     G + I+TV G GY L
Sbjct: 184 GYDYDPGSNIVDVYVGYLRKKL-----GDDLIQTVRGVGYRL 220


>gi|114800395|ref|YP_760884.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740569|gb|ABI78694.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L  + + V     GEDG+ L    E+DAI++D+ +  + G 
Sbjct: 1   MKILIVEDEPKTIAYLQRGLTEQGYAVDTAANGEDGLHLALTGEYDAIVMDVMMPGLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR++K  TPV  L+    ++D++RGL +GADDY+ KPF+  ELVARI+AI RR R
Sbjct: 61  LVLQSLRISK-DTPVIFLTARDKVDDRLRGLGAGADDYLVKPFSFLELVARIQAITRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L ++       R++LT +E+ ++  L+ R++  ++K      ++D
Sbjct: 120 TRETTLIQVADLHIDLVSRRAIRGARRLNLTAREFSLLAALARRRSQIVSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++V I +LR KL    G    + TV G GYVL
Sbjct: 180 INFDTNTNVVEVAIKRLRSKLEE-PGEIRLLHTVRGMGYVL 219


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     +I  GDL ++ +++ + + G  ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      +V+ +DV + +LR+K+ +      Y+   WG GY   +N
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGYYYSQN 230


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D +E    Y  D I+LD+ +  + G  
Sbjct: 14  RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A+ + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 74  AARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 133

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKE 172
             +         ++   DL ++L  + V ++G+R + LT  E+ ++E+L       LT+E
Sbjct: 134 AVEQAAPDDDGDVLAFADLRMDLSTREV-LRGNRPVELTRTEFTLLEMLLAHPRQVLTRE 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR  +
Sbjct: 193 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGS 244


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L+EDD  +A  ++L LK E + +     G   +E  + + +DA+ILDL L  + G E
Sbjct: 6   KIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +Q+L      I    + ++  A+ V + G  + LT +E+ ++   +       +++  L
Sbjct: 126 MSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQALL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++  + E     ++  I +LR K+   A     I TVWGRGY L
Sbjct: 186 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231


>gi|255655706|ref|ZP_05401115.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451712|ref|ZP_06893444.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296878956|ref|ZP_06902955.1| DNA-binding response regulator [Clostridium difficile NAP07]
 gi|296259475|gb|EFH06338.1| DNA-binding response regulator [Clostridium difficile NAP08]
 gi|296430069|gb|EFH15917.1| DNA-binding response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  S+   L+ ++F     + GE+ + L     +D +ILDL L +I GF
Sbjct: 1   MKVLIVEDNKILLESVAEELR-KHFETEKCEDGEEALYLVNQNIYDLVILDLMLPNINGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +RV  I TPV IL+   +++DKV     GA+DY++KPF  EELVAR+ AI+ R+ 
Sbjct: 60  DILKKMRVNNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +        S+ LD   K V ++   I L  K++ ++E   L K + L KE   + +
Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  ++I++V++  LRKKLS   G   YI+T    GY+ 
Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220


>gi|221200151|ref|ZP_03573194.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206696|ref|ZP_03579708.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221173351|gb|EEE05786.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180390|gb|EEE12794.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 252

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218


>gi|205353035|ref|YP_002226836.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272816|emb|CAR37742.1| transcriptional regulatory protein PhoP, regulator of virulence
           determinants [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326628114|gb|EGE34457.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLLHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ + + I   LK E +N+     GED I       F  +ILDL L  I G E
Sbjct: 5   RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R +  + P+ ILS      D++ GL  GADDYI KPF+  EL AR+++ +RR   
Sbjct: 65  VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123

Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++ ++++ I+   DL +N     V  +   ++LT KE+Q+++L     +   TK    N
Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++ +   +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 184 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 230


>gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
 gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+I+L EDD  +A  I   L     +V +V D G D +    + + D  ILD  L  + G
Sbjct: 1   MKIMLAEDDTKVADYIVAGLSEHGHSVDHVAD-GRDALSYLLYNDCDLAILDRMLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             VL+ALR +K S PV  L+ M  ++D+V GL +G+DDY++KPF+  ELVARI AIVRR 
Sbjct: 60  LSVLKALRASKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIVRRK 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A+ ++   DL+++L A+T   QG  + L  KE+ ++E+L       +T+ + L  +
Sbjct: 120 TETRAEPVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTRTLLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P   +++  + +LR K+ +       I T+   GY +
Sbjct: 180 WNFNFDPNTTVVETHMSRLRAKV-DKPFETPLIHTIRNTGYSM 221


>gi|161523829|ref|YP_001578841.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351409|ref|YP_001947037.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221211333|ref|ZP_03584312.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160341258|gb|ABX14344.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189335431|dbj|BAG44501.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168694|gb|EEE01162.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 252

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218


>gi|260905731|ref|ZP_05914053.1| response regulator receiver [Brevibacterium linens BL2]
          Length = 242

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + +  + + +       G D +   +   FDAI+LD+ L D+ GF 
Sbjct: 14  RVLIVDDEANLAELLVMACQVKGWEAASVGTGRDAVARARNEHFDAIVLDVMLPDLDGFA 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  +R   I TPV  LS    ++D++ GL+ G DDY++KPFN +E++AR+ A +RRS  
Sbjct: 74  VIEKVRGEGIDTPVVFLSARDEVDDRLTGLRLGGDDYVTKPFNLDEVIARVEARLRRSAP 133

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              S    L+  GDL +++ +  V   GH I LT +E++++ L        L+K   L+ 
Sbjct: 134 VIPSGDEDLLRVGDLELDVRSHEVSRAGHPIDLTAREFEVLLLFMRNPRAVLSKAQILDR 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224
           ++D        I+++++  LRKK+        N   T  G GY+LR +
Sbjct: 194 VWDYDFGGNGNIVELYVSYLRKKIDAPFEDLPNLFHTKRGAGYILRAD 241


>gi|323127354|gb|ADX24651.1| transcriptional regulatory protein [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L        V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I  PV I++   S++DK +G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKIPVLIMTAKESLDDKGQGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++ V+L  K V+V G  I L GKE+ ++  L   +N  L K    + L+ 
Sbjct: 121 KFTDKNLAFGNVVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYI---ETVWGRGYVLREN 224
              +  + +++V++ K+RKKL     G +++   +T+   GY+L+ +
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVDKLQTLRSVGYILKSH 223


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++        +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 122/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 10  RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +        ++   DL ++L+ + V     R+ LT  E+ ++E+        LT+E 
Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR    D
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+  LA  +   L  E ++  V D G  G++      FD IILD+ L  + GFE
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   + TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR++ 
Sbjct: 64  ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ +I  GDLS+  +   V + G  + L  KE++++  L  R    +T++  
Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N ++        + +DV +  LRKKL    G    IE++ G GY L
Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE--LGQSVQIESIRGVGYKL 228


>gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72]
 gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D ++LD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A    PV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  GVLQTVRRAGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ ++   K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDSFEPK-LIRTVRGMGYVL 220


>gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +  GDL ++L  +     G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDTK-LIQTVRGMGYVL 221


>gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
 gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 6/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K     +   L    + V +   G DG+       +D I+LD+ L  + G+
Sbjct: 1   MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR +++ TPV +L+    +ED+V+GL+ GADDYI KPF   EL+ARIR +++R +
Sbjct: 61  QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS   +   +L ++L  + V      I LT KE+ ++EL   +    +++    + +
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +D   + +  +IDV + +LR K+      K  I T  G GYVL E    E C
Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKVDKPFEPK-LIHTERGMGYVLEER---EPC 228


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   VKILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR   ++  
Sbjct: 62  EVLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  
Sbjct: 121 VTVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  +IDV+I  LR K+ +A   K  I TV G GYV+++
Sbjct: 181 VCGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKD 225


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|167033875|ref|YP_001669106.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860363|gb|ABY98770.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD      I   L S    V   D G +G+       +D I LD  L ++ G  
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++  LR  KI+TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR S 
Sbjct: 63  IVTTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L +       + ++L   EY+++E L       +T+ M    ++ 
Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   +IDV I +LRKK+ ++ G    I TV G GY + E
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224


>gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 236

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG------IELCKFYEFDAIILDLGL 54
           MRIL+ EDD  LA  +   L+      Y  D   DG      +       +D +ILD+GL
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAG---YAVDQASDGATADAALSAQTAQTYDLLILDVGL 57

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EVL+ LR      PV IL+   S+E++V+GL  GADDY++KPF   EL AR+RA
Sbjct: 58  PRMSGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRA 117

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +VRR  G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  
Sbjct: 118 LVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++HL    +E     I+V+I +LRKK+         I TV G GY L
Sbjct: 178 VDHLCGWGEEVSNNAIEVYIHRLRKKIEVEG---IRIATVRGLGYCL 221


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +++ L+ E F   +   G    E      FD I+LD+ L  + G E+
Sbjct: 7   VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+AR+R  +RR   S
Sbjct: 67  CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 186 GFDYTGETNVVDVYIRYLRAKLDDRF-HKKYIYTVRGVGYVVRD 228


>gi|225575608|ref|ZP_03784218.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037161|gb|EEG47407.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM
           10507]
          Length = 236

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M I+++EDDK + + I   LK  ++   +T  G   I     +  D I+LDLGL DI G 
Sbjct: 6   MLIMVVEDDKLVGNLITSTLKVNDYKYILTTTGNTAIMEAVSHRPDVILLDLGLPDIDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV++++R   +  P+ ++S  S  +DK+  L +GADDY++KPF+ +EL+AR+R+ +RR  
Sbjct: 66  EVIKSVRSWSMC-PIIVISARSEDKDKIDALDAGADDYLTKPFSVDELLARLRSTMRRIQ 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G    +   G L ++  + +V V+G  IHL   EY ++ LL+      LT    
Sbjct: 125 YLEDNAGKETPVFENGQLRIDYSSASVTVKGEEIHLMPIEYSLLCLLAQNIGKVLTHSYI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++    E ++  + V++  LRKK+        YI+T  G GY
Sbjct: 185 LDKIWKNSIESDLSSLRVYMTSLRKKIEIGCERGTYIQTHIGIGY 229


>gi|161522889|ref|YP_001585818.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348280|ref|YP_001941476.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346442|gb|ABX19526.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189338418|dbj|BAG47486.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 221

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   I   L+ + F V +V D G+      + +   A ILDLGL  + G
Sbjct: 1   MRILLVEDDILLGDGIRAGLRQQGFQVDWVRD-GDAAQRELRAHAHAAAILDLGLPLVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+ +R   ++ P+ IL+   ++ D++R L  GADDY+ KP +  EL AR+RA+VRR+
Sbjct: 60  MDVLQRIRRDGMALPILILTARDAVPDRIRALDVGADDYVIKPVDLYELGARLRALVRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +   D+ +   ++T    G  + L+ +E+ ++ +L L     L++E    +LY
Sbjct: 120 HGRPTERLQAQDVELEPASRTARRAGVAVALSTREFDLLHILMLNAGRVLSREQIELYLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E E   ++V + +LR KL     G   I TV G GYVL  +A
Sbjct: 180 SWGQEVESNAVEVHVHRLRAKL-----GSELIRTVRGVGYVLMRDA 220


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++A+   + + L+ E F+V     G+  +        D ++LD+ L DI GF
Sbjct: 5   VRVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V + LR A    P   L+   + EDKV GL  G DDY++KPF   ELVAR+RAI+RR+ 
Sbjct: 65  AVCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAG 124

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +   DL ++ + + V   G  + LT  EY+++  L +     LT+   L+H+
Sbjct: 125 MADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + ++++ ++  LR+K+ +A      I TV G GYVLR
Sbjct: 185 WGHDFGGDARVLETYVSYLRRKIDDAP--PALIHTVRGVGYVLR 226


>gi|94314245|ref|YP_587454.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93358097|gb|ABF12185.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
          Length = 221

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   ++  LK  +      + G+  ++      +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDRMIGQVVQDALKDASCAADWVEDGQAALDALDRQHYDVVLLDLGLPRKSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR    + PV IL+   ++ED++ GL +GADDY+ KPF  +EL+AR+RA+ RR  
Sbjct: 61  AVLTSLRARGSAVPVLILTARDALEDRIGGLDAGADDYLVKPFEMDELLARMRAVWRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A S++  G +S++L  +   + G     LT +E+ +++ L  R    L++      +Y
Sbjct: 121 GLASSVLGNGRVSLDLSTRQATLTGGAPQQLTNREFALLQALLARPGAILSRAELEERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              DE E   ++  I  LR+KL     G   I  V G G+
Sbjct: 181 GWGDEVESNAVEFLIHGLRRKL-----GSTIIRNVRGVGW 215


>gi|317057288|ref|YP_004105755.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449557|gb|ADU23121.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 220

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 123/217 (56%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L+  +   L++E + V   + G+  ++L + Y    ++LD+ L D+ GF V
Sbjct: 4   ILIVEDDIELSSLLTDFLRAEGYTVSAVESGDRALQLFERYGARLVVLDINLPDVNGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TP+ I+S  +  +DK+ G   GADDYI KP++ + L+A+I+ I +R R  
Sbjct: 64  CSKLR-EQADTPILIVSCRTDKDDKLNGFGLGADDYIEKPYDIDILIAKIKGIFKR-RYQ 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             ++   G + +NL  +T E+ G  + LT KE+ ++ LL   K+  L KE   N+++   
Sbjct: 122 LDTISADG-VKLNLADRTAEIDGEAVELTVKEFDLLTLLVQNKDKVLKKEYLFNNVWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E++ + V I +LR+KL +       + TVWG GY
Sbjct: 181 SDSEMQTLHVHINRLRQKLGDDPKSAKRLLTVWGVGY 217


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A      L+   + V +   G  G++      +D +I+DL L  + GFE+
Sbjct: 4   ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R  K+  P+ +LS  S   DK+RGL  GADDY++KPF+  EL+ARIR+ ++R    
Sbjct: 64  IKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYERL 122

Query: 121 -GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G  Q + V     L +N  +  V V G  +  T KEY+++   +   N   +KE   + 
Sbjct: 123 TGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERIFDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+      ++  + V I K+RKK+        YIETVWG GY
Sbjct: 183 LWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGY 224


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 4   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I +G  S+N+  + +   G  + LT  EY ++  L  +    ++++  LN ++ 
Sbjct: 124 DEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+KL         I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYVWKESIR 229


>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
 gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
          Length = 234

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L +  + V V   G++ +E    +  + I+LDLGL  + G E
Sbjct: 4   RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +LS      DKV  L  GADDY+ KPF  +EL+ARIR  +R S  
Sbjct: 64  VCRRIR-GWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + + ++  G+L ++   + V ++GH +HLT  EY+++ L +      LT  M L  +
Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E E+  + VFI +LR+K+        YI T  G GY
Sbjct: 183 WGANYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGY 223


>gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 219

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I T+ G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTMHGIGYTL 216


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 126/245 (51%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD A+  S+E  L+ E + V     G   +E+    + D ++LD+ +  + G 
Sbjct: 1   MRVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      PV +L+    + D+V GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRST 120

Query: 121 -------GHAQS------LIVTGDLS---VNLDAKTVEV--QGHRIHLTGKEYQMIELLS 162
                  GH  +        V   LS   V LD  + +V  +G  + LT  E++++EL  
Sbjct: 121 LVTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFL 180

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 L++ M +  ++     P    ++VF+  LR+KL  A G    + TV G GYVLR
Sbjct: 181 THPRQVLSRSMIMEKVWGYDFGPSSNSLEVFVSYLRRKL-EAGGEPRLLHTVRGVGYVLR 239

Query: 223 ENAKD 227
           E A D
Sbjct: 240 EPAAD 244


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L+   F V     G   I      E D I+LD+ L D+ GF 
Sbjct: 5   RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR A  + P+  L+     EDK+ GL +G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 65  VTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTMQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S+I TG+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 125 ADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+K+ +    +  I+T  G GY+L+
Sbjct: 185 YDFNGDAGIVESYISYLRRKI-DPHSSEPLIQTKRGFGYMLK 225


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG++ I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224


>gi|312866100|ref|ZP_07726321.1| putative response regulator ArlR [Streptococcus downei F0415]
 gi|311098504|gb|EFQ56727.1| putative response regulator ArlR [Streptococcus downei F0415]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++S+   L        V D GE+G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSVYDFLDDFAEVTQVFD-GEEGLFEAETGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   + TPV I +   +++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  TVLKELRDKGVVTPVLITTAKEALDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL  +    TV+V G  + L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KINDKLLTYGDLECDTSTNTVKVNGKVVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  V +++V++ K+RKKL      K  ++T+   GY+L++
Sbjct: 181 FDSDTTVSVVEVYVSKIRKKLKGTDFEKC-LQTLRSVGYILKD 222


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  +++ L++E ++  +   GE+ + + +   FD I+LD+ +  + G E+
Sbjct: 5   ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  K   + P+ ++S  +   DK+ GL +GADDY++KPFN  EL AR+++++RRS 
Sbjct: 65  CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +++         +  G L ++     VE  G  +HLT  E+ ++ LL+ +     + E 
Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              H++  +       + V I KLR KL    G K  I TVWG GY
Sbjct: 185 IFQHVWREKYFESNNTVMVHISKLRDKLEQETGDK-LIATVWGVGY 229


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   IE  K +E       FD IILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSR-GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R  +   L V    D+++N     V V+G  + L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247


>gi|302525771|ref|ZP_07278113.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434666|gb|EFL06482.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V +   G+DG E      +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEEPLADAIARGLRREGMAVDIALTGDDGHEKSSVTRYDVVLLDRDLPGMSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +  +   T V +L+  SS+ D+V GL  GADDY++KPF   ELVAR+RA+ RR+ 
Sbjct: 61  DLCREIVTSGELTRVLMLTASSSVSDRVDGLSLGADDYLAKPFAFPELVARVRALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  L+  GD+ ++   +TV      + LT KE+ ++E+L     + ++ E  L  ++D
Sbjct: 121 PAAPPLLTAGDVELDPAKRTVRRASGPVELTRKEFGVLEVLLSAGGSVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LRKKL    G    IETV G GY
Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGY 215


>gi|160943091|ref|ZP_02090328.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445560|gb|EDP22563.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii
           M21/2]
          Length = 262

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   I   L+   + V     GE  +E      +D ++LDL L  + G 
Sbjct: 38  MRLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALEALAAERYDLVLLDLNLPKVDGM 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR+LR   + T V ILS  S I DKV GL +GA+DY+SKPF+  EL AR+R++ RR  
Sbjct: 98  QVLRSLRQHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRKF 157

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G LS N  ++   V    + LT KE  ++E L L +   +++E  + H++D
Sbjct: 158 IQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVWD 217

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G  +     I V I  LRKKL  AA G + I    G GY
Sbjct: 218 GSVDSFSNSIRVHISALRKKL-RAALGYDPIRNRIGEGY 255


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L K   +D I+LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++        +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|297539008|ref|YP_003674777.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258355|gb|ADI30200.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 15/224 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57
           MR+LL+EDD  +  SI   L  EN   Y  D   DG   EL      +D I+LDLGL   
Sbjct: 1   MRLLLVEDDVMIGESINEALNGEN---YAVDWARDGRSAELALANGVYDLILLDLGLPKK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VL   R      PV I++   S+ DKV GL +GADDY+ KPF+ +EL AR+RA++R
Sbjct: 58  QGLQVLSEYRQRGGMLPVLIITARDSMADKVGGLDAGADDYLVKPFDLDELFARVRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM--FL 175
           R  G AQ +I  G +++N     V + G  + L+G+E+ +  LLSL       + +    
Sbjct: 118 RHTGRAQPVITYGKVTLNPAIHEVHLDGQLLSLSGREFAL--LLSLLTPPGRVRSLAELE 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             LY    E     ++V I +LRKKL     G N+I+ + G GY
Sbjct: 176 EKLYSWDHEVASNTLEVLIHRLRKKL-----GTNFIQNIRGMGY 214


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   LK E F   V D GED + L     +D  +LD+ L  + G+E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +K + PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +    ++++ DA T       I LT +E++++  L       +++E  L  
Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +      E K +D  I +LR K+ +A      +ETV G GY  ++
Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRFKQ 231


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +  +++  L+ E + V     GE+G++     + D ++LD+ +  + GF 
Sbjct: 3   RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   LR      P+ +L+    IED+V GL +GADDY+ KPF+ +EL+AR+RA++RR + 
Sbjct: 63  LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G++ +++  +T       +H T KEY M+ LLS      +++E FL+ ++
Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P  + +D  I  LR K+ +      +I+TV G GY L
Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224


>gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
 gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR   +V+R  
Sbjct: 61  KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKR-- 118

Query: 121 GHAQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H  S+ ++ + S   + LD K+  V +G R ++L  KE+ +++ L     + +++    
Sbjct: 119 -HQSSVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLF 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 178 ESVWSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|25026789|ref|NP_736843.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259508073|ref|ZP_05750973.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492068|dbj|BAC17043.1| putative transcription regulator [Corynebacterium efficiens YS-314]
 gi|259164296|gb|EEW48850.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 15/227 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD  +A  I   L  E F   V   G          +FD +ILDLGL  + G +
Sbjct: 5   RILIAEDDDGIADFIRRGLVQEGFECEVAVSGAAAFARAHSGDFDLMILDLGLPHMDGAD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-------A 114
           VL  LRV K+S P+ +L+  ++IED++R L+ GADDY+ KPF   EL+AR++        
Sbjct: 65  VLEQLRVLKVSLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVKLRLASRQP 124

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + R +  H   L+  G L ++L  + V V      L+ +E+ ++E L       L++   
Sbjct: 125 VERTTNTH---LLKHGTLELDLRTQKVFVADKWRDLSRREFDLLETLMRHPGQILSRAQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++D   +P   ++DV+I  LRKK+     G   +ET+ G GY L
Sbjct: 182 LNMVWDMSFDPGSNVVDVYIRALRKKI-----GTEKVETIRGSGYRL 223


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  +   ++ +L  E + V V + G  G+++ +    + +ILD+ +  + G+E
Sbjct: 4   RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ ILS    +E +V+GL  GADDY+ KPF  EEL+AR++A++RR   
Sbjct: 64  ICRRFRRENF-IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+ +I   DL ++L  + V   G  + LT KE+ +++L     N  LTK+  ++H++  
Sbjct: 123 SAK-VIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++V++  LR+KL      +  I TV G GYVLRE  
Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSR-LIHTVRGVGYVLREQG 224


>gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L   +F   +    E   +L     FD ++LD+GL D  GFE+
Sbjct: 5   ILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTEGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR  +   PV +L+      D++ GL+ GADDYI KPF+  ELVAR++A++RR++  
Sbjct: 65  LKTLR-PQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQTR 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+S  V  D   +  A  +  QG  + LT  EY+++  L  R     ++E  L  +
Sbjct: 124 PASEAESAPVWHD---DAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + G    +   I+  I  LR KL  A      I T  G GY   E 
Sbjct: 181 FGGNRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFNET 226


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V V   GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK STP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKQVR-AKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  GDL+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L    +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 235


>gi|331696703|ref|YP_004332942.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326951392|gb|AEA25089.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 221

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ALA ++   L+ E   V +   G +G E      +D ++LD  L  + G 
Sbjct: 1   MRVLIVEDERALADAVARGLRREGLAVDLAYDGLEGQEKTSVTRYDVVVLDRDLPGMSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +  +   T V +L+   S+ DKV GL  GADDY++KPF+  ELVARIRA+ RR+ 
Sbjct: 61  ELCDEIVASAAPTRVLMLTASGSLADKVDGLSRGADDYLAKPFDFPELVARIRALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+V GD++++   +TV      + LT KE+ ++E+L   +   ++ E  L  ++D
Sbjct: 121 PATPPLLVAGDVALDPARRTVRRAEQVVELTRKEFGVLEVLMGARGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LRKKL    G    IETV G GY
Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGVIETVVGAGY 215


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  +++ L+ E F       G    E      FD I+LD+ L  + G E
Sbjct: 12  RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R A  + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+AR++  +RR   
Sbjct: 72  ICRRVR-AVTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDI 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  +
Sbjct: 131 STEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 191 WGFDYTGETNVVDVYIRYLRAKLDDRF-NKKYIYTVRGVGYVVRD 234


>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
 gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ + + I   LK E +N+     GED I       F  +ILDL L  I G E
Sbjct: 10  RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R +  + P+ ILS      D++ GL  GADDYI KPF+  EL AR+++ +RR   
Sbjct: 70  VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128

Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++ ++++ I+   DL +N     V  +   ++LT KE+Q+++L     +   TK    N
Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++ +   +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 189 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 235


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 120/230 (52%), Gaps = 12/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI---ILDLGLTDIPG 59
           +L+ +DD+A+  S+E  L+ E    Y T    DG+E       D +   ILD+ +  + G
Sbjct: 7   VLIADDDRAIRESLERALQLEG---YQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R LR     TP+ +L+      D+V GL +GADDY+ KPF  +EL+ARIRA++RR+
Sbjct: 64  LGVCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRA 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G A+ LI  GDL ++  A+ V   G  + L+  E+ ++ELL+      L     
Sbjct: 124 APTTGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + ++     PE K + V+I  LR+KL    G    I+TV G GY LR  
Sbjct: 184 YDRIWGYDFGPESKNLAVYISYLRRKL-EPEGTTPLIQTVRGVGYTLRPK 232


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD ++A  +   L  E +N+     GE+G+   + + +D +++DL +  + G EV
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  + + P+ I+S   S  DK  GL  GADDY++KPF+  E+ ARI++ +RRS  +
Sbjct: 65  IRQIR-TRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTY 123

Query: 123 AQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+           ++  G+L ++ D  TV   G+ I LT KE  +++L +   N   TK 
Sbjct: 124 ARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTKA 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++      +  +I+V I +LR+K+        +I+T+WG GY
Sbjct: 184 QLYGFIWKDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGY 230


>gi|291617065|ref|YP_003519807.1| PhoP [Pantoea ananatis LMG 20103]
 gi|291152095|gb|ADD76679.1| PhoP [Pantoea ananatis LMG 20103]
 gi|327393515|dbj|BAK10937.1| transcriptional regulatory protein PhoP [Pantoea ananatis AJ13355]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F +    D  ++DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLSVQLREMGHQV---DAAEDAKEADYFLQEHLPDIALVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +  P+ +L+     + KV  L++GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGMSLIRRWRNDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  +I      V+L  + + +    + LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGHASQIIAMAPFQVDLSRRELTIHDQPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A      I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHSDEVIATVRGQGY 218


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S   +I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I+TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223


>gi|229187336|ref|ZP_04314479.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228596040|gb|EEK53717.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   L  E   +       +G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLTQEGHFILKLHNENEGLNIAYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K  TP+ I++   S ED V GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVK-KTPIIIVTSNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 119

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222


>gi|89074900|ref|ZP_01161350.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
 gi|89049297|gb|EAR54860.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR   +V+R  
Sbjct: 61  KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKR-- 118

Query: 121 GHAQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H  S+ ++ + S   + LD K+  V +G R ++L  KE+ +++ L     + +++    
Sbjct: 119 -HQSSVNISSEYSYDDLRLDIKSHRVWRGSRLLNLQQKEFLLLQYLMEHAESVVSRMSLF 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 178 ESVWSYHFDPKTNVIDVHIANLRKKLEE-GGETSLIHTVRGAGYVLR 223


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +A  ++  L  E + V   + G  G++  +    D ++LD+ L D+ G EV
Sbjct: 7   LLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
              LR+ +   P+ +L+ + ++ED+VRGL++GADDY+ KPF  +EL+ARI A++RR  R 
Sbjct: 67  CERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDRP 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L ++  A+T    G  + LT  E+ ++  L  R    L+++     ++  
Sbjct: 127 SEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWGH 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +    +IDV++  +R+KL +  G +  IETV G GY
Sbjct: 187 DFDRGTNLIDVYVNYVRRKL-DEVGCEAPIETVRGIGY 223


>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+IEDD+ +A  +   LK ++   +V D+  DGIE  ++ +   +D I+LDL L  +
Sbjct: 1   MRILIIEDDERIAKPLAEDLKHQH---HVVDIACDGIEGWEYAQAGNYDLILLDLMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + + LR +  +  + +L+   +  +K+ GL +GADDY+ KPF+ EEL ARIRA+ R
Sbjct: 58  DGITLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+   Q +++ GDL ++     V      + LT KEY ++E         LT+   L+ 
Sbjct: 118 RSQETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L++       + +   I  LRKKL      +++IETV+G GY L
Sbjct: 178 LWEFDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221


>gi|332308774|ref|YP_004436624.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176103|gb|AEE25356.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG        F+ IILD+ L D+ G+
Sbjct: 1   MRLLIVEDETKTGDYLKQGLSEAGFQVSLARNGLDGHHFAMTESFEVIILDVMLPDVSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR A   TPV  LS   S++D+V+GL+ GADDY+ KPF   E++AR+R ++R  R
Sbjct: 61  RILESLREANNDTPVLFLSARDSVDDRVKGLELGADDYLVKPFAFSEVLARVRTLIR--R 118

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G AQ +  T    DL +++  + V   G RI L+ KE+ ++ELL  R+   L + +  + 
Sbjct: 119 GGAQKVEDTFKVADLEMSIPQRKVTRTGKRILLSNKEFSLLELLLRREGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +IDV I +LR K+ +  G K  I TV G GY L
Sbjct: 179 VWDMNFDSDTNVIDVAIRRLRGKVDDEFGLK-LIHTVRGMGYKL 221


>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 244

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L    + V   D G       +    D I+LDL +    G  
Sbjct: 10  RILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLMMPGEDGLA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR     TPV +L+      D+V GL+ GADDY+ KPF   ELVARI A++RR   
Sbjct: 70  VLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLGP 129

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R  A+  ++T G  ++N  A TV  +G  + L+ +EY +   L+      L++   +  
Sbjct: 130 DRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIER 189

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              GRD E   + IDV + +LR+ + +      ++ TVWG GYVL +NA+D
Sbjct: 190 AL-GRDAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADNAED 239


>gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L  E +NV     G+  ++  +   +D  I+D+ + +  G 
Sbjct: 1   MRVLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R A I  PV  L+  +  +D VRGL +GA DY++KPF   EL+AR+R ++R   
Sbjct: 61  TVLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  G L V+++ +     G  I LT +EY ++E L+  +N  +T+E    ++++
Sbjct: 121 PVNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+    +IDV+I  LR+K+ +    K  I T+ G GY L
Sbjct: 181 IDDDVNSNVIDVYIRYLRRKIDDNYEEK-LIHTIRGVGYKL 220


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E ++  + + GE  +   + +  D I+LDL L  + G++
Sbjct: 16  KILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGYQ 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 76  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +  +   DL++NL   +V     R+ +  KE +++  L+   N   T+E  L
Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +H++      + + +DV I +LR+K+ +    K  I TVWG GY
Sbjct: 195 DHIWGYEYIGDTRTVDVHIKRLREKIKD--HDKWSIATVWGIGY 236


>gi|311693011|gb|ADP95884.1| DNA-binding heavy metal response regulator [marine bacterium HP15]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M++L++ED+  LA  I   L  E+F V   D+ ++G E   F E   + AIILD+GL D 
Sbjct: 1   MKVLIVEDNAILAEKISGWLAKEHFTV---DVAKNGAEANSFVETCSYQAIILDIGLPDQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++  R       + IL+  S+  ++V GL +GADDY+ KPF  +EL AR+ AI+R
Sbjct: 58  NGLSLMQKWRSGGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A   I+     +N   +T+    H+   LT  EY++++ L    +   +++  + 
Sbjct: 118 RKDGRATDKIIVDGFQLNATYRTLTTPDHKEFRLTATEYRLLQCLLRSPDRVFSQDELVE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LY+    P   ++ V+I +LRK L     GK  I+T+ G+GY  
Sbjct: 178 ALYNIERCPTRNVVQVYIARLRKIL-----GKKRIKTLRGQGYFF 217


>gi|294633188|ref|ZP_06711747.1| DNA-binding response regulator TcrA [Streptomyces sp. e14]
 gi|292830969|gb|EFF89319.1| DNA-binding response regulator TcrA [Streptomyces sp. e14]
          Length = 222

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 19/226 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ LA  +E +L+ E + V V   G+ G+ L     +D ++LD  L  + G +
Sbjct: 7   RLLLVEDDRELAAMLETVLRDEGYTVDVATDGQQGLHLGLTRRYDVLVLDRRLPVLDGLD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   + TPV +L+ M ++ D+V GL +GADDY+ KPF+ +EL AR+RA+ RR   
Sbjct: 67  LLSRLRSRALRTPVLLLTAMGTVHDRVDGLDAGADDYLVKPFDLDELSARLRALCRR--- 123

Query: 122 HAQSLIVTGDLSVN-----LDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +L VT  LS+      +  + VE+  G RI L  +E+ ++  L+ R +   T+    
Sbjct: 124 ---ALDVTDVLSIGSGRLLVAHRAVELADGERIALAAREFALLWALASRPHVVYTRAELR 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++  + P   I+D ++  LR+KL     G   + TV G GY L
Sbjct: 181 RTVFE--EAPASSIVDTYVYYLRRKL-----GTKVVRTVRGLGYRL 219


>gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 268

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   ++  L    F++     G  G E      +DA+ILDL L  I G 
Sbjct: 50  MRILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 109

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 110 DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 169

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G+++++  A      G  + L  KE+ ++ELL   K   L +++    LY 
Sbjct: 170 GQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 229

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      ++V +  LR+KL     G ++I TV G GY L
Sbjct: 230 WDENVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 265


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 116/218 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ++ P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 VT     GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 223

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++IEDD+  A  +   LK    +    D GEDG+EL     +D +++D  L    G  ++
Sbjct: 1   MIIEDDREAADYLLKALKEAGHSPDHADNGEDGLELAISNTWDVLVVDRMLPKRDGLSII 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-H 122
             LR +   TPV ILS +S ++D+V GL++G DDY+ KP+   EL+AR+  + RR  G  
Sbjct: 61  ETLRASGDETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQ 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++ +   DL ++  A +V   G  I L  +E++++E L       +T+ M L +++D  
Sbjct: 121 VETKLQVSDLVLDRLAHSVTRAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYH 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVLRENA 225
            +P+  +IDV I +LR K+     G ++  + TV G GY +R+++
Sbjct: 181 FDPQTNVIDVHISRLRSKIDK---GFDFPLLHTVRGAGYSIRDSS 222


>gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+KA+A      L+S  F V +   G+ G++      +D IILD+ L  + GFE+
Sbjct: 4   ILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K + PV +++      DK+RGL  GADDY++KPF+  ELVAR++A + R    
Sbjct: 64  CRQIRQTK-NVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYERL 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              RG +   I    L +++ ++ V +      LT KEY ++ LL+   N    KE    
Sbjct: 123 TAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V I +LR+K+ +      YIET+WG GY
Sbjct: 183 RIWGLDSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGY 225


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E+F V     G +  ++   Y  D I+LD+ L    GF+
Sbjct: 4   KILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  K   P+  LS      DKV GL+ GADDYI+KPF+  E+VAR++A++RR + 
Sbjct: 63  ICREIR-DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +  ++   L ++L+A+TV+V    + LT KE+ ++ L++       T+E  LN +
Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +D  I ++R+K+    G   Y+ TVWG GY
Sbjct: 182 WGYDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGY 222


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   +++ L+ E + V+  + G + ++     + D I+LDL + +I G E
Sbjct: 3   KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R+     P+ +L+      DK+ GL+ GADDYI+KPFN  E+VARI+A++RR   
Sbjct: 63  VCRQIRMHS-RVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L +N+   TV++QG  I  T KE +++ LL+       T+E  L
Sbjct: 122 ISTDSGKQQVLKYNG-LEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
             ++      + + +D  I ++RKK+ +A    ++ I+TVWG GY
Sbjct: 181 EKVWGYDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGY 225


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIR-EKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++        +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|75812821|ref|YP_320438.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75705577|gb|ABA25249.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 725

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 119/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++E+D+  A ++   L ++ F V         +EL +  E+D I+LD+ L D  G 
Sbjct: 1   MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +L+   +  D++ G ++GADDYI+KP+   EL+ARIRA++RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY+++EL          +   L+ +  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + P  + I   I  LR+KL  A    + IET++G GY L+
Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK 222



 Score = 54.7 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 14/119 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDI--P 58
           R+L+++DD AL   +E  L+   F V  T L +      +F+++ +A   DL L D+  P
Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQV--TTLADSS----QFWQYLEATTPDLLLLDVAMP 660

Query: 59  GFEVLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           GF  +   +V K        PV +LS  +  +   R L +GADDYI KP  + +L+ RI
Sbjct: 661 GFSGIELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719



 Score = 43.9 bits (102), Expect = 0.019,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY---VTDLGEDGIELCKFYEFDAIILDLGL--TDI 57
           +LLI+DD  L   ++    + N++++   VTDL      L ++   DAIILDL    T  
Sbjct: 483 VLLIDDDTDLIERMQA--NASNWSIHLETVTDLTLARQRL-QYLTPDAIILDLTFPNTTE 539

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  L+    + PV +L+G+  +  +V   + GA+ ++ KP    E+   +  ++ 
Sbjct: 540 SGLTLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLH 599

Query: 118 R-SRGHAQSLIVTGD 131
           R    +A+ LIV  D
Sbjct: 600 RIDTINARLLIVDDD 614


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ L   ++L L  E + V     GE+G+E  K   +D +ILDL L  I G  +
Sbjct: 4   ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDGLTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA+ RR+   
Sbjct: 64  CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTTP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  GD+++N+  K V+  G  I LT KE++++ LL+       +K+  ++ ++
Sbjct: 123 YVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   ++V I KLR+K+ +      +I T WG GY ++
Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDKA+A      L++ +F+V +   G++G E     +FD I+LDL L    GF 
Sbjct: 3   RILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R  K  TP+ ++S      DKVRGL  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  VCRAIRQKK-DTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q        I TG L +  +A+ V   G  + LT +E+ ++   +       +K+   
Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      +   + V I ++R+K+        YIETVWG GY
Sbjct: 182 DRIWGMDALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGY 225


>gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA +I   L +E F   V   G+DG  +    EFD I+LD+ L    G+
Sbjct: 1   MRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFAIACSDEFDVIVLDIMLPGKHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR   + TP+ +LS      D       GADDY+ KPF+    +AR+RA+VRR  
Sbjct: 61  DIVRDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDLS++     V   G  + LT +EY ++E L       +TK   +  ++D
Sbjct: 121 PQRPSILTVGDLSLDPAKHQVIRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E +  I++V+I  LRKK+ +   G + IET+ G GY
Sbjct: 181 TNYEGDENIVEVYIGYLRKKV-DLPFGTHSIETIRGIGY 218


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     V V   G DG +L +   FD ++LD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R +    +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI A++RRS+
Sbjct: 63  LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRSK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL ++ + +      H + LT KEY+++E     +   L++   L H++D
Sbjct: 123 EKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRTKIDKDYENK-LIHTVVGLGYIM 222


>gi|153953290|ref|YP_001394055.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853922|ref|YP_002471044.1| hypothetical protein CKR_0579 [Clostridium kluyveri NBRC 12016]
 gi|146346171|gb|EDK32707.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567646|dbj|BAH05630.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59
           MR+LLIED+  L+ ++  +LK  N+NV   D   DGI+  +  E D   + +    +PG 
Sbjct: 1   MRLLLIEDEVMLSEALVYILKKNNYNV---DSAYDGIKGQEMAEIDIYDIIILDRMLPGK 57

Query: 60  --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              EVL+ +R   I TPV IL+ M SI  +V GL  GADDY+ KPF+KEEL+ARIRA+ R
Sbjct: 58  DGLEVLKHIRNRGIRTPVIILTAMDSISSRVEGLDQGADDYLIKPFSKEELLARIRALGR 117

Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     Q   I    L+ +     ++ + +++ LT KE Q++ELL+  KN  LTK+  L+
Sbjct: 118 RHIDFIQCGTIQLASLTFDPLRGELQYKENKVKLTSKESQLLELLARNKNQVLTKDQILD 177

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    + E+   I+V+   LRKKL         IET+ G GY L+E
Sbjct: 178 RVWGPDSDVEMNNNIEVYFSYLRKKLRR-LNCNVIIETIRGIGYCLKE 224


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 118/221 (53%), Gaps = 8/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L   +        F V     G  G+       FD IILD+ L  + GFEV
Sbjct: 27  ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  + +TPV +L+   S  D+V GL SGADDY+ KPF  +EL+ARIRA++RR+ GH
Sbjct: 87  LRQLR-KRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRT-GH 144

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    ++ +  L ++  A+ V   G  I +T  E+ ++E+L      T+T++     L
Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y     P  + +DV I  LRKKL      ++ I T+ G GY
Sbjct: 205 YQRPATPYERSLDVHISHLRKKLER--DDRSVIRTIRGVGY 243


>gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  LA  +   L++E   V V + GE G+ +    ++DAI+LD+ +  + G+
Sbjct: 1   MRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V  ALR     TPV  L+      D+V GL +G DD+++KPF+   LVAR+RA+VRR S
Sbjct: 61  RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  + ++  GDL ++  A+        I LT +E  +++ L       +TK+  L +++
Sbjct: 121 RGRPE-ILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G  + +  I++V+I  LR K+     G+  I TV G GY L  N 
Sbjct: 180 GGSFDGDTNIVEVYIGHLRAKVDRPF-GRAAIGTVRGAGYRLDRNG 224


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+A+A      L++ ++ V + + GE G++     +F  I+LD+ L    GF+
Sbjct: 3   RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           V R LR +K + P+ ++S      DK+RGL  GA+DYI KPFN  EL+AR+++ +    R
Sbjct: 63  VCRNLRASK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 118 RSRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++G    ++L+   +L ++L++  V + G  + L  KE++++  L+   N   +K+   
Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E+  + V I ++R+K+   +    +IETVWG GY  R+
Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ALA  I ++L+++ F       G   +        D ++LDL L  I G E
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 65  VCRLIR-AESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R + + ++++V + +LR K+         + TV G GY
Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGY 221


>gi|70729941|ref|YP_259680.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344240|gb|AAY91846.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S   +V   D G +G+      ++D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLVRAVSGDYDLITLDRMLPELDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           ++  LR   +STP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR   
Sbjct: 63  IVTTLRTIGVSTPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRKNT 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    SL V  DL +NL ++        + L   EY+++E L       L++ M    +
Sbjct: 123 VKDFDTSLRV-ADLELNLISREATRADQLLSLLPTEYKLLEFLMRNTGQILSRMMIFEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +P   +IDV I +LRKK+ +  G    I TV G GYV+ E
Sbjct: 182 WGYHFDPGTNLIDVHIGRLRKKI-DPPGMTPLIRTVRGSGYVIAE 225


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +EL L  E + V V   G  G E       D IILDL L ++ G E
Sbjct: 4   RILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R  +   P+ +L+    + DKV GL SGADDY++K F  EEL+ARIR I++R   
Sbjct: 64  VCRRVR-KESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  + ++I  G L +  D   V  +G  I L+ KE+++++ L   K   L++E  L+H++
Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  + DV+I  LR K+      + +I TV G GY+ +++
Sbjct: 183 GYDYYGDTNVTDVYIKYLRNKIDQKFDVR-FIHTVRGVGYIFKQD 226


>gi|160896591|ref|YP_001562173.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362175|gb|ABX33788.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222874799|gb|EEF11930.1| predicted protein [Populus trichocarpa]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ALA ++   L+S+ F +  V  L +    L     + A++LDL L+D  G
Sbjct: 1   MRILLVEDDEALAQAVGSYLRSKAFLIDSVPSLAQARACLAG-ASYAAVLLDLHLSDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  LR  +      +L+    + D++RGL +GADDY+ KP++ EEL+AR+RA+ RR 
Sbjct: 60  LALMPTLRRLEQPPVTIVLTARDQVSDRIRGLDAGADDYLVKPYDPEELLARLRAVSRRG 119

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G      +++  G L ++L  + V   G  + LT KE+ ++ +L++      T+E  L+
Sbjct: 120 GGMQAGQDAVLRMGTLEIDLAREMVRDAGRTLLLTPKEWALLRVLTVHPGRLYTREHLLD 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LY    E +   ++VFI +LR+KL     G+  I TV G GY L
Sbjct: 180 ALYGFDAEADSNTLEVFISRLRRKL-----GRERILTVRGTGYRL 219


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR L+   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 75  VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKIDT--GDKRLLHTLRGVGYVLRE 238


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 4/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   +      ENF V+V   G+ G+E     E D IILDL L    G +
Sbjct: 5   KILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R L+      P+ ILS  +   D+++GL+ GADDY++KPF+ +ELV R++ +++R + 
Sbjct: 65  ICRQLKPHN-KIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKRINN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL +N + + V+V+   I L  KE+ ++  L+    T  ++E  L  ++D
Sbjct: 124 DQDQNELSFPDLIINKEQRLVKVKKEEIALAPKEFDLLWQLASSPKTVFSREKLLELVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 ++ +D  I  +R KL    G  NY++TVWG GY
Sbjct: 184 FDYFGGIRTVDTHIKSIRNKLGAEVG--NYVQTVWGIGY 220


>gi|300702865|ref|YP_003744466.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299070527|emb|CBJ41822.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L   +F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLSRALAQSSF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     ++V + +LRKKL   AG    I TV G GY+L
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLL 218


>gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
 gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 9   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLSGKHQALSEEYDLIILDVMLPKL 65

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  + P+  LS    IED+V+GL  GADDY+ KPF   EL+ARI++++R
Sbjct: 66  DGWNIIYDIRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLR 125

Query: 118 RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S LI   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 126 RGQQKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 186 QIWDMNFDSDTNVVEVAIKRLRSKIDSNFSPK-LIQNIRGMGYVL 229


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +     +  D  +LD+ L D+ GF 
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 LEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+         I+T  G GYVLR   K
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVLRTAEK 238


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 15/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A++  +   L+ E + V V + G   +      + D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++R  RG+
Sbjct: 64  CRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLR--RGN 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              L  TG   V +D     ++ HR       + L+ KE++++ +L       +T+E  +
Sbjct: 122 VDQL-TTGAHGVKID-----IESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIM 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++D       K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 176 RQVWDTTWWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED+  +   I    K  N+ VY    G+D +      + D IILD+ + ++ G+E
Sbjct: 4   RVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R ++   P+ +L+  S  +DK+ G + GADDY++KPF+ + L+AR  A+++R  G
Sbjct: 64  VCRQVR-SRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEG 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H Q    ++  G   +N  A  +EV    + LT KEY+++ LL   K   ++++  LN +
Sbjct: 123 HVQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E + +++D  I KLR KL   +    +I TV+G GY   E
Sbjct: 183 WGIDFEGDTRVVDTHIKKLRSKLGRES---RHIRTVFGTGYRFEE 224


>gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 18  MKILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRMMPRRDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+      K  + TV G GY+L+
Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 239


>gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
 gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L  E FN  +   G++GI      E+ A+ILD+ L D+ G 
Sbjct: 13  MKILLVDDDVELGNMLREYLSGEGFNAELVLTGKEGIAAALSGEYTALILDIMLPDMSGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 73  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 131

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I   DL++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 132 EHPDAPSADDSVITHSDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 192 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 239


>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L L+ +N +V  T  GE+G++  + +  D ++LDL L  + G E
Sbjct: 3   RVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ + +      D V GL++GADDY+ KP     L ARIRA++RR+ G
Sbjct: 63  VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   GDL+V+    TV + G  I L   E +++  LS       +++  L
Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++     + +++D  + +LR K+S       YI TV G GY
Sbjct: 183 EAVWEHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGY 226


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   +   L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
 gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG++ I+TVWG GY
Sbjct: 180 FERVWQQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224


>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 234

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56
           ++L+ ED+ ++   + + L    + V   + GED +   K YE     FD  +LD+ +  
Sbjct: 3   KVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDAL---KAYEENEGAFDVALLDIMMPG 59

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G +V + +R       + +LS  S   DK+  L SGADDYI+KPF+  EL+AR+ A+ 
Sbjct: 60  IDGMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVC 119

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR    A      S I +G   +NL ++TV   G +I LT  EYQ++E     +N  L +
Sbjct: 120 RRVNRSAVKPEEASTITSGPFVLNLKSRTVLKNGRQIDLTQVEYQIMEYFFKNQNAALDR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              LNH++      + KI+DV I ++R K+ +      YI T+WG GY
Sbjct: 180 SSILNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGY 227


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ +E  +  E D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-AKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             QS       I  G L +N D+ +V   G ++ LT +E++++  L+   +  +T+E  L
Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+         + T  G GY LR    D
Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYLRNPETD 233


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 26  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 86  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 144

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 145 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 204

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 205 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 247


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 6   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 66  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 125 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 184 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 228


>gi|257067507|ref|YP_003153762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558325|gb|ACU84172.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 13/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  +A  +E  LK+  F   V + G   ++L    + D +ILD+GL  + GF
Sbjct: 1   MRILIAEDEARIARFMERGLKANGFATTVVEDGISALDLASAGDVDLLILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR   +  P+ +++  + ++D V+GL+ GA+DYI+KPF  EEL+AR++   R + 
Sbjct: 61  QVLKALRGMDVQIPILMVTARTGVDDTVQGLEDGANDYIAKPFRFEELLARVKLRAREAA 120

Query: 121 GHAQS----LIVTGDLSVNLDAK----TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               S    ++  GDLS++L  +    T E Q   + L+ +E+ M  +     N  LT++
Sbjct: 121 SGPGSVSADVLELGDLSLDLRTRIASCTAEGQQRSVELSSREFTMARVFLENPNQVLTRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + L+ ++    +    ++DV++  LR KL     G   + TV G GY L + A
Sbjct: 181 LLLSKVWGYDYDGASNVVDVYVGYLRGKL-----GAPRLVTVRGAGYKLVDPA 228


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V V   GE+ ++  +    D I+LDL L  I G E
Sbjct: 14  KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK STP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 74  VAKQVR-AKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 132

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  GDL+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 133 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L    +D
Sbjct: 193 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 245


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   RILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V      + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGY 224


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  126 bits (316), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 120/227 (52%), Gaps = 16/227 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +  S+ L L  +   V     G  G+EL      D +++DL L DI GFE
Sbjct: 20  RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR +    P+ +++  +   D V GL++GADDY++KPF  +EL ARIRA++RRSR 
Sbjct: 80  CCRRLRRSS-DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G A  +I   DL +  DA  V   G  +HLT  E++++  L+   +   ++E  L  +
Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198

Query: 179 Y------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      DGR      I+DV + +LR K+         + TV G GY
Sbjct: 199 WGYDYFGDGR------IVDVHVRRLRTKIEEDPAHPRILVTVRGLGY 239


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  ++L L+ E + V   D G + I L    +FD ++LDL +  I GFE
Sbjct: 6   RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + ++  K    + IL+   +++DKV+GL  GADDY++KPF  EEL+ARIRA +R+   
Sbjct: 66  VCKRMKAQK-DVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  IV GDL ++   + V+     ++L+ KE+ +++ L+      L ++  LNH++  
Sbjct: 125 DLEQ-IVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV+I  LR K+ +    K  + TV G GY L+
Sbjct: 184 DYYGSENVVDVYIRYLRAKIDDPFENK-ILHTVRGVGYALK 223


>gi|253702121|ref|YP_003023310.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776971|gb|ACT19552.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M  L++ED +  A  +   L   +  V V   G  G+ + +  ++D I+LDL L  I GF
Sbjct: 1   MYFLIVEDAEKTAEQLRRGLSEMSVTVDVAPDGLKGLAMARERDYDLIVLDLMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    +TP+ IL+    + D++ GLQ GADDY+ KP++  EL ARI+A++RR +
Sbjct: 61  EVVKRLREGGSTTPIMILTARDEVHDRITGLQLGADDYLVKPYSFAELCARIQALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I   DL+VN  A      G  + LT KE+ ++ LL  R     ++      +++
Sbjct: 121 VVQQDEIQVADLTVNFFAHKATRAGKNLDLTPKEFALLSLLIRRAGEVQSRLRIAERVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E  +KI+DV +  LR K+ +    K  I TV G GY+L + 
Sbjct: 181 LGFEANLKIVDVKVAALRAKV-DGPFEKKLIHTVRGLGYILEDR 223


>gi|192360483|ref|YP_001983964.1| response regulator receiver domain-containing protein [Cellvibrio
           japonicus Ueda107]
 gi|190686648|gb|ACE84326.1| Response regulator receiver domain protein [Cellvibrio japonicus
           Ueda107]
          Length = 219

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  LA  +   LK   F V ++  G+      +    D ++LDLGL D+ G 
Sbjct: 1   MQILLVEDDNLLAEGMMNALKRAGFAVNLSRTGKAACTYLQAEPPDILLLDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K+   V IL+   S   KV GL +GADDY++KPF  +EL+AR+R + RR  
Sbjct: 61  DVLKFIRDKKLQVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G LS+N     V + G  + L+ +EY +++ L        T+E     LY 
Sbjct: 121 TANTAMIHVGPLSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+V I  LRKKL       N+I T+ G GYV+
Sbjct: 181 WNDEVASNAIEVHIHNLRKKLP-----LNFIRTIRGVGYVV 216


>gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3
           str. Ether]
 gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28]
 gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++    T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      +  + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222


>gi|154243824|ref|YP_001409397.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154162946|gb|ABS70161.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 7/219 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LIEDD  L  ++   + ++     +VT L +   +      FD I+LDL L D  G + 
Sbjct: 1   MLIEDDPVLGVAVRDQIVADGHGTDWVTRLADA-ADAVHAAAFDLILLDLMLPDGRGSDF 59

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR A  +TPV +L+    I D++  L +GADDY+ KPF+  EL ARIRA+ RR  G+
Sbjct: 60  LRTLRSAGAATPVMVLTARDQISDRIAALDAGADDYLVKPFDLCELSARIRAVGRRYAGN 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+  G++ V+L A++V   G  + LT +E+ + E    R +  ++K      LY   
Sbjct: 120 PNPLVTLGNIEVDLAARSVRRAGQAVALTAREWALFEAFVQRPHQLMSKPQLEERLYSFD 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E E   I+V++ +LRKKL     G + IETV G GY L
Sbjct: 180 AEVESNAIEVYVARLRKKL-----GADVIETVRGMGYRL 213


>gi|152969690|ref|YP_001334799.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206579731|ref|YP_002239238.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288936097|ref|YP_003440156.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510851|ref|ZP_06550221.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|330016190|ref|ZP_08308420.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
 gi|150954539|gb|ABR76569.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206568789|gb|ACI10565.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342]
 gi|288890806|gb|ADC59124.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777567|gb|EFD85565.1| two-component system, OmpR family, response regulator PhoP
           [Klebsiella sp. 1_1_55]
 gi|328529475|gb|EGF56380.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp.
           MS 92-3]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L   +   ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 220


>gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR
 gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella
           enterica subsp. enterica serovar Typhimurium]
          Length = 228

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM---FLN 176
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +   F+ 
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFMV 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +   IDV + +LR K+ N  G K   +TV G GY+L
Sbjct: 181 WVHEFL-TADTNAIDVAVKRLRAKIDNDYGTK-LNQTVRGVGYML 223


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 67  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 126 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 114/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|225028586|ref|ZP_03717778.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
 gi|224954068|gb|EEG35277.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   LK  ++       G   I     +  D ++LDLGL D+ G +V
Sbjct: 6   VLVVEDDRPIRNLIVTTLKMHDYKYLTAKNGASAIMEASSHHPDIVLLDLGLPDMEGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116
           ++ +R    + P+ ++S  S   DK+  L SGADDYI+KPF+ EEL+ARIR      AI+
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDSDKIEALDSGADDYITKPFSVEELLARIRVTQRRLAII 124

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +       S+ + G L ++  A    ++G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QAGEEQEASIFINGQLKIDYTAGCTYLKGKELHLTPIEYKLLCLLSRNVGRVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + ++  + VF+  LRKKL     G  YI+T  G GY
Sbjct: 185 QIWGNCSQNDIASLRVFMATLRKKLEPDKNGLQYIQTHIGIGY 227


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S       +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 131/235 (55%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDI 57
           M+I++++D++A+  S   + +S +FN Y   L +DG+E  +  E +    +ILD+ +  +
Sbjct: 1   MKIVVVDDEQAVRES---LCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR +    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++R
Sbjct: 58  DGLEVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLR 117

Query: 118 RSRGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+        +Q  +   DL +N D + V   G  I LT  E+ +++LL       L++ 
Sbjct: 118 RAAAESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRA 177

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++ G D P     ++V+I  LR+K + + G    I TV G GYVLRE A 
Sbjct: 178 SILEEVW-GYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRETAP 230


>gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A+ + I  +L S  + V     G++G+ L   +  D I+LDLGL DI G E+
Sbjct: 7   VLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGLPDIDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV ++S      +KV  L  GADDYI KPF   EL+ARIR  +R S   
Sbjct: 67  LKNLRQWS-KTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A      +  +  G L+++   +TV   G +IHLT  EY+++ LLS      LT +  + 
Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++    E E   + V +  +R+K+    G   YI T  G GY + E   +
Sbjct: 186 EIWGVYTE-ESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRMAEEVTE 235


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           EVLR  R+ K+S  P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++ 
Sbjct: 62  EVLR--RIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ + 
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +       E  +IDV++  LR K+ +    K  I TV G GYV+++
Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225


>gi|167585551|ref|ZP_02377939.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 242

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKNGVEADTALSMQTFDLLILDLGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V++ +LRKK+  +      I TV G GY L
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCL 218


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++A+A   +  L+   F V + + G+ G+E     ++D IILDL L ++ GF+
Sbjct: 3   KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K + P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 HAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  V  D+       ++  A+ + V G     T KE+ ++  L+   N   TK    
Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 67  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 126 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
 gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   +           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNIDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A     T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/235 (34%), Positives = 130/235 (55%), Gaps = 15/235 (6%)

Query: 3   ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           ILL++D+   AH +EL+   +++E F+    + GE  ++L      DA+ILDL L  I G
Sbjct: 5   ILLVDDE---AHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGIDG 61

Query: 60  FEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            EVL+ +RV   +   PV +L+  S   D+V GL+ GADDY+ KPF   ELVAR++A++R
Sbjct: 62  LEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLR 121

Query: 118 RSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+    +         +  G + ++   +TV+ +G  + LT KE+ ++ L +      +T
Sbjct: 122 RAEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVIT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++  L  ++      E + +DV I +LRKK+        YI TV G GY LRE+A
Sbjct: 182 RDEILTKIWGYDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKLREDA 236


>gi|241662072|ref|YP_002980432.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779746|ref|ZP_07674503.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|240864099|gb|ACS61760.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921485|gb|EFP67125.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG------IELCKFYEFDAIILDLGL 54
           MRIL+ EDD  LA  +   L+      Y  D   DG      +       +D +ILD+GL
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAG---YAVDQASDGATADAALSAQTAQTYDLLILDVGL 57

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EVL+ LR      PV IL+   S+E++V+GL  GADDY++KPF   EL AR+RA
Sbjct: 58  PRMSGLEVLKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRA 117

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +VRR  G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  
Sbjct: 118 LVRRGTGGGATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++HL    +E     I+V+I +LRKK+         I TV G GY L
Sbjct: 178 VDHLCGWGEEVSNNAIEVYIHRLRKKIEVEG---IRIATVRGLGYCL 221


>gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3]
 gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3]
 gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 221

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 120/201 (59%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L+H +   + +  + V + + G++ +E  K   +D IILD+ +    G 
Sbjct: 1   MRILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R     T + +L+ M   +DKV GL +GADDY+SKPF+ +EL+AR+R+  RR  
Sbjct: 61  EALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELLARLRSRQRRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++  GDL++N + +++E   + I LT +E ++++   L  N  L+    +NH++D
Sbjct: 121 SYQVDVLEFGDLTLNGNDQSLESH-NSISLTNRENRLLQYFILNANKELSANELINHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             +  + + + + IC LR+KL
Sbjct: 180 ENETADQEDLWINICYLRQKL 200


>gi|229014283|ref|ZP_04171402.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746883|gb|EEL96767.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMVE 225


>gi|262043157|ref|ZP_06016295.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039545|gb|EEW40678.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 18  MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 74

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 75  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 134

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L   +   ++K+  +  
Sbjct: 135 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 195 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 237


>gi|257868543|ref|ZP_05648196.1| response regulator [Enterococcus gallinarum EG2]
 gi|257802707|gb|EEV31529.1| response regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  +A  +E++L+ E +++ V + G   + + +   FD I+LDLGL DI G E+
Sbjct: 8   VLLIEDDPTIADFMEVVLEKERYHIRVAETGMAALTIFQEQSFDLILLDLGLPDIDGMEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  +++ P+ ++S  S+  +KV+ L  GADDY++KPF   EL+ARIR   R  +  
Sbjct: 68  LKIIR-KRMAVPLIVISARSNESEKVKALDLGADDYVTKPFGMNELLARIRTAFRHRKQE 126

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              L++  G+L+++ + + +   G  IHLT  EY+++ +L       +T +     ++ G
Sbjct: 127 PMPLVIKNGELTLDTERQLLTKAGTEIHLTKNEYRILTVLFQHLGKVVTYQTLATEVW-G 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +++ V +  +RKK+        Y+ T  G GY LR++
Sbjct: 186 PYGTDPQVLRVNMSNIRKKIETNTISPEYLITEIGLGYRLRDH 228


>gi|229164064|ref|ZP_04292001.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619447|gb|EEK76336.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   I   L+ E + V      + G +L   Y  D +ILD+ L D  G+
Sbjct: 4   LRVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLLNEYRCDLVILDVMLPDASGY 63

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +   +R A     TPV +L+ +   +++V GL++GADDY++KPF+ +ELV R +A+VRR
Sbjct: 64  ALCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123

Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           S G  Q     I+ G++SVN     V + G R+  T  E ++++ L    N  ++ +  L
Sbjct: 124 SGGVVQPELREIIVGEVSVNPATHAVVIGGRRVDTTATEGKLLQALVSHPNEVVSVKRLL 183

Query: 176 NHLYD------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D      GR+     ++     +LRKKL NA    + I  V G+GYV +
Sbjct: 184 NEVWDTTATQGGRN-----MVKSTAYRLRKKLENAGLPADSILAVRGQGYVFQ 231


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222
                +  I++ +I  LRKK+      +  G K+     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMIR 239


>gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19]
 gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      +  + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222


>gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 239

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 16  MKILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 76  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+      K  + TV G GY+L+
Sbjct: 196 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 237


>gi|310817287|ref|YP_003949645.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309390359|gb|ADO67818.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  L   I   L    F       G   +   +   +  IILDL L    G +
Sbjct: 4   RILLIEDDPQLGAQIADFLGRAGFEPVWWKEGR-ALHPGEAEAYGLIILDLMLPGTYGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR      PV +LS  +   DKVR L+ GADDY++KPF  EELV R+RA +RR   
Sbjct: 63  ILRGLREGS-EVPVLVLSARNDTSDKVRALRLGADDYMTKPFWPEELVERVRARLRRPVM 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  G L V+L A+ V V G  + LT  E+ ++  L+ R    +T++  ++++ D 
Sbjct: 122 QRQEQVELGALRVDLQAREVLVHGKPVELTRVEFNLLAALARRPGAAVTRQWLVDNVLDP 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
             E   + +DV + +LR+KL    G   +IETVW
Sbjct: 182 EREGTERTLDVHVSRLRRKL----GPGKHIETVW 211


>gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445]
 gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+      +  + TV G GY+L+
Sbjct: 181 NYHFDPQTNVIDVHISRLRSKIEKGF-DEPLLHTVRGAGYMLK 222


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A  STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+     + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 19  RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 79  PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138

Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI T    D+S+N     V V+G  + L+ KE++++EL         ++
Sbjct: 139 LLRRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 199 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 246


>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 228

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 124/218 (56%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L +SI+  L  E ++V      E   ++     +D +++D+ L  I GFE
Sbjct: 7   KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  LR + I+ P+ IL+ + +I DKVRGL  GADDY++KPF+  EL+ARI++++RRS  
Sbjct: 67  FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I    L +N  ++ V V+   + ++ +E+ ++EL         ++E  +  +++ 
Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +  +IDV+I  LR KL    G   YI+TV G GY
Sbjct: 187 EKIIKSNVIDVYILYLRNKLK-PYGYDRYIQTVPGYGY 223


>gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 122/218 (55%), Gaps = 6/218 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED+++ +  +  +L  E F+V V D G D +        D ++LDL L   PG EV R 
Sbjct: 1   MEDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQLPGTPGTEVCRQ 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR  + S PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR +G  + 
Sbjct: 61  LR-QRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QGEPEE 118

Query: 126 LIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           LI +    G + ++++   V V G ++ L  KE++++E+L       LT+   ++ ++  
Sbjct: 119 LITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWGS 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + K +DV + +LR K+        Y+ TV G GY
Sbjct: 179 DYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGY 216


>gi|321271584|gb|ADW79672.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Kentucky]
          Length = 186

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 2/179 (1%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           E+D +ILD+ L D+ G++++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF
Sbjct: 4   EYDLVILDIMLPDVNGWDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPF 63

Query: 104 NKEELVARIRAIVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
              EL+AR+R ++RR      +S     DLS++L ++ V   G+RI LT KE+ ++E   
Sbjct: 64  AFAELLARVRTLLRRGNTMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFI 123

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   L + +  + ++D   + +   IDV + +LR K+ N  G K  I+TV G GY+L
Sbjct: 124 RHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYML 181


>gi|300716267|ref|YP_003741070.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
 gi|299062103|emb|CAX59219.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED++ L H + + L+     V   D  ED  E   F   +  D  ++DLGL D 
Sbjct: 1   MRVLVVEDNQLLRHHLAVQLRDMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +  P+ +L+     + KV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMALIRRWRSEDVKQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVVARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQIISLAPFQVDLSRRELTINDTQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKM-QAEHPLDVITTVRGQGY 218


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S       +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGY 227


>gi|238894177|ref|YP_002918911.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546493|dbj|BAH62844.1| response regulator in two-component regulatory system with PhoQ
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 237

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 15  MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAREADYYLGEHLPDIAIVDLGLPDE 71

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 72  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 131

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L   +   ++K+  +  
Sbjct: 132 RNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLMLQ 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 192 LYPDAELRESHTIDVLMGRLRKKI-QAEYPQDVITTVRGQGYLF 234


>gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 1   MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 61  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V  +   + ++ +E+ +++ L       +++E     L
Sbjct: 121 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 223


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 14/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLI+DD  L   +E  L +E+F++ +   GE+G  L    E D ++LD+ +    GF
Sbjct: 2   LRILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEHDLVVLDVMMPRFNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           + LR +R A    PV +L+      D++ GL+ GADDY+SKPFN  ELVAR+RAI RR  
Sbjct: 62  DTLRLIR-ASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVV 120

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +  +  S+   G +++    + +E +G  + +T  EY ++E+L+      ++K
Sbjct: 121 VRDEALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSK 180

Query: 172 -EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E+F   L  GR E    + +DV +  LR+KL     G++ I+TV G GY
Sbjct: 181 AELFTQAL--GRAESRYDRSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGY 228


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ +      I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +++++D+ A+  S+   L+ E + V V   G  G+ L +    D ++LD+ +  + G 
Sbjct: 1   MHLVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + PV +L+  + + D+V GL +GADDY+ KPF  +EL+AR+RA++RR+ 
Sbjct: 61  EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120

Query: 121 GHAQSLIVTGDL----SVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H               V LD  T EV +GHR +HLT  E+ M+E         LT+ + 
Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++          +DV++  LR+KL  A G    + TV G GYVLRE
Sbjct: 181 FENVWGYDFGTASNGLDVYVSYLRRKL-EADGEPRLLHTVRGVGYVLRE 228


>gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  LA  +E  L    + V V   G   +   +    D ++LD  L  I G EV
Sbjct: 11  ILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR+     PV +++    + D+V GL +GADDY+ KPF+ +EL+ARIR  ++  +G 
Sbjct: 71  CRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPKGS 130

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S +V  DL+++   +       ++ LT KEY ++  L       LT++  L H++   
Sbjct: 131 GDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGYD 190

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR K+    G K  I+TV G GYVLRE
Sbjct: 191 FTGDSNIIEVYIRYLRLKI-EGPGEKRLIQTVRGVGYVLRE 230


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+     + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|295102156|emb|CBK99701.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M +L+IED++AL  +I   L+   ++V Y  D GE  + L     +D ++LDL L    G
Sbjct: 1   MHLLVIEDERALCETIVRSLRRLAYSVDYCYD-GEKALALLGVERYDLVLLDLNLPKKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR     T V ILS    +EDKV+GL +GA+DY++KPF+  EL ARIR++  R 
Sbjct: 60  MTVLRTLRQTDRETRVLILSARCEVEDKVQGLDAGANDYLAKPFHLAELEARIRSLTLRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  G LS +  ++T  V G  + LT KE  ++E L + +   +++E  ++H++
Sbjct: 120 FTQQDVLLSCGGLSFDTRSRTAAVNGQTLTLTRKETGILEYLMVHQGRPVSQEELMDHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +     I V I  LRKKL  A  G + I    G GY++
Sbjct: 180 DSSVDSFSNSIRVHISALRKKL-RAVLGYDPIRNRIGEGYLM 220


>gi|260597499|ref|YP_003210070.1| DNA-binding transcriptional regulator PhoP [Cronobacter turicensis
           z3032]
 gi|260216676|emb|CBA30024.1| Virulence transcriptional regulatory protein phoP [Cronobacter
           turicensis z3032]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L      V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLSELGHQV---DAAEDAKEADYYLNEHLPDVAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R ++I+ P+ +L+     +DKV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGLSLIRRWRASEITLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + V +  + I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISMPPFVVDLSRREVTIHDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+     G+  I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQAEYPGEA-ITTVRGQGY 218


>gi|269102741|ref|ZP_06155438.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162639|gb|EEZ41135.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +   L    + V     G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKILVIEDDNTTRDFVVQGLIEHGYVVDEASDGHQGLMMATSCEYSLIILDRMLPMLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  + STPV ILS M S+E++V GL +G+DDY+ KPF   EL+AR   +++R  
Sbjct: 61  KVLAAIRATENSTPVMILSAMDSVEERVVGLTAGSDDYLIKPFALAELIARAEILIKRH- 119

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            HA + + T     DL ++L +  V      I+L  KE+ +++ L     + +++     
Sbjct: 120 -HATTQVATEYVYADLKLDLKSHRVWRGNRVINLQQKEFLLLQYLMGHAESVVSRMSLFE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++   +P+  IIDV I  LRKKL +A G  + I TV G GYVLR++
Sbjct: 179 SVWNYHFDPKTNIIDVHIANLRKKL-DAEGEVSLIHTVRGAGYVLRQD 225


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ ++L     ++ +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++++    L+++L+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGY 228


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           RIL+ ED+  +   + + L+   + V     GED ++   F E    FD  +LD+ +  I
Sbjct: 3   RILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALK--AFDEAKGDFDIALLDIMMPGI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + LR    +  + +L+  +   DKVRGL  GADDY++KPF+  ELVAR+ AI R
Sbjct: 61  DGFEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHR 120

Query: 118 R-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R     ++      IV+G   +N  ++ +   G  + LT  EYQ++EL    +N  L + 
Sbjct: 121 RVNMIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRT 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             LN ++      +VKI+DV I +LR K+ +      YI T+WG GY
Sbjct: 181 HILNEIWGDNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGY 227


>gi|167746379|ref|ZP_02418506.1| hypothetical protein ANACAC_01088 [Anaerostipes caccae DSM 14662]
 gi|317470786|ref|ZP_07930169.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654372|gb|EDR98501.1| hypothetical protein ANACAC_01088 [Anaerostipes caccae DSM 14662]
 gi|316901724|gb|EFV23655.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+ + I   L  E +  +     ++ +      + D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDKAVKNLITTTLDIEGYRYHTAGRAQEAMVEAVSQKPDIMLLDLGLPDMDGMEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +    P+ ++S  S  EDK+  L +GADDY++KPFN EEL+AR+R  +RR    
Sbjct: 66  ISKVR-SWSKMPIIVVSARSDDEDKIEALNAGADDYLTKPFNVEELLARLRVSLRRLHDF 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++   G L ++  +  V + G  +HLT  EY+++ LLS      LT    LN 
Sbjct: 125 SDAAQEEAVFTNGGLEIDYSSGCVSLDGKELHLTPIEYKLLCLLSRNVGKVLTHNFILND 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + +V  + V++  LRKK+   +    YI+T  G GY
Sbjct: 185 VWKSALDSDVTSLRVYMANLRKKIETDSSHPKYIQTHVGIGY 226


>gi|229175788|ref|ZP_04303294.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607739|gb|EEK65055.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+++++LA  I   LK E   +        G+ +    ++D IILD     I G E+
Sbjct: 1   MLVIKNERSLAKKIVSGLKQEGHFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPEI 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 61  CRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 119

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     DL V+  +  V+     + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 120 QQNETNFFQFKDLFVDASSNIVKKGSKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 GYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 222


>gi|218288804|ref|ZP_03493067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512312|ref|YP_003185746.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218241162|gb|EED08338.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257479038|gb|ACV59357.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 226

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   +  + +   + V   D     +E      +D I+LD  L D  G 
Sbjct: 1   MRLLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLDYMLPDGDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  LR A  +TP+ +L+  +  +D+V GL  GADDY+ KPF+ +EL+AR+ A+VRRS 
Sbjct: 61  EALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSP 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G   ++  ++++E  G  + LT KE+ ++E L   K+  +T++  +  ++
Sbjct: 121 ALTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E     +D +I  LR+K SN  G KN I TV GRGY L+   +
Sbjct: 181 GPDAEVADSALDTYIYFLRRKCSN-IGWKNAIVTVRGRGYALQPEGE 226


>gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida 3523]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 132/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+           V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKEIAQFIKTKFVENGIETTVAYDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ LR   ++TP+ ILS + S E+K++GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRTKQ 125

Query: 121 -GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              AQ+  +  GD+ ++  A  V   G  I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLT-EGGLIDPIKTIRGFGYVIQE 229


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
 gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V  +   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232


>gi|254470513|ref|ZP_05083917.1| two component transcriptional regulator, winged helix family
           protein [Pseudovibrio sp. JE062]
 gi|211960824|gb|EEA96020.1| two component transcriptional regulator, winged helix family
           protein [Pseudovibrio sp. JE062]
          Length = 227

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  LA ++   L  EN        G+ G++     ++D I+LDL L  + G  V
Sbjct: 10  VLLIEDDMDLAATVGDYLSFENIECDYAFNGQVGLDSALKNQYDLILLDLTLPKVDGLTV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR   ++ P+ +L+   ++ D+V G ++GADDY+ KPF   EL  RIRA+VRRS+GH
Sbjct: 70  CEQLRAQNVTCPILMLTARDAVSDRVAGFEAGADDYLIKPFAFPELAVRIRALVRRSKGH 129

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + S+ + GDL VNL A+     G ++ L+   + ++E L       L+K+     ++ G 
Sbjct: 130 STSVTI-GDLEVNLSARQASRAGRKLKLSPTGWVLLEQLVRSTPNVLSKQELERAVW-GD 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P    + V + KLR++L      +  + TV G G+ LR
Sbjct: 188 QVPASDSLKVHLYKLRRQLQRPYETQ-LLHTVAGHGFALR 226


>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +RIL++EDD +LA  +   LK E + V   DL  DGI   +      FD ++LDLGL  +
Sbjct: 7   LRILVVEDDLSLADGLVTALKREGYTV---DLLHDGIHALEALANEVFDLVVLDLGLPRL 63

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+ LR  + + PV IL+   ++ED+V GL  GADDY+ KPF+  EL AR RA++R
Sbjct: 64  DGLAVLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G A S I    L +   +  V  Q   ++LT +EY ++  L  +     T+++    
Sbjct: 124 RSYGRAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y   D+ E   ++V I  LRKKL         I T+ G GYV+
Sbjct: 184 MYGWGDDVESNALEVHIHHLRKKLF-----PELIRTIRGIGYVV 222


>gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   I   L+     V +V D      EL +   + A +LDLGL    G
Sbjct: 1   MRILLVEDDPLLGDGIRAGLRQAGLQVDWVRDGHAAETEL-RTRSYAAAVLDLGLPLKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL ++R A ++ PV +L+   ++ D+VRGL  GADDY+ KP +  EL AR+RA+VRR+
Sbjct: 60  IDVLSSVRRAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q  +   D+ +   A+ V   G  + ++ +E+ ++ +L L     +++E     +Y
Sbjct: 120 HGQPQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   ++V I +LR KL     G + I TV G GYVL
Sbjct: 180 GWGREVESNTVEVHIHRLRAKL-----GSDLIRTVRGVGYVL 216


>gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           M++L++ED++ L   + L+ +  +   YVTD+ +DG   ++L     +D IILD+ L   
Sbjct: 1   MKVLIVEDERKL---LRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEVLR +R       + +L+  S I+D+V+GL  GA+DY++KPF+ +EL AR+R+++R
Sbjct: 58  DGFEVLRDIRQFNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     ++ I    ++ +   +    +G  + LT KE  +IE L L ++  ++ E  ++H
Sbjct: 118 RKSIQEETEITINGITFDTVKRIATFKGKDLGLTAKETGIIEYLFLNRDRYVSVEELMDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +     + V +  LRKK+     G+NYIE   G+GY + E
Sbjct: 178 VWDSNADDFSNTVRVHMSSLRKKIKKVT-GENYIENAIGKGYKIYE 222


>gi|251782466|ref|YP_002996768.1| putative response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391095|dbj|BAH81554.1| putative response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L        V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I  PV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++ V+L  K V+V G  I L GKE+ ++  L   +N  L K    + L+ 
Sbjct: 121 KFTDKNLAFGNVVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYI---ETVWGRGYVLREN 224
              +  + +++V++ K+RKKL     G +++   +T+   GY+L+ +
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLK----GTDFVDKLQTLRSVGYILKSH 223


>gi|188579406|ref|YP_001922851.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179342904|gb|ACB78316.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F A++LDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +    + ++     V + G  + ++ +E+ ++  L  R N   +K      LY 
Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEVESNTVEVHVHNLRAKI-----GKHAIETVRGLGYRMRATA 220


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   + V+    G + + L    + D +ILD+ L D+ GF 
Sbjct: 25  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 85  VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 144

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 145 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 204

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN----YIETVWGRGYVLRE 223
           +   E +  I++ +I  LR+KL       N     I+T  G GY+LR+
Sbjct: 205 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRD 252


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV +LS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   +P+  +IDV I +LR K+         + TV G GY+L+     ++ 
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGF-DVPLLHTVRGAGYMLKAGKSKQST 230


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E +   +   GE  +     ++ + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS      DKV GL+ GADDYI KPF  +E+VAR++A++RR   
Sbjct: 66  VCREIRKNN-NVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYH- 123

Query: 122 HAQSLIVTG---------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             QS+ V           DLS+NLD  +V   G  + +  KE +++  L+   N   T+E
Sbjct: 124 MPQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L++++      + + +DV I ++R+K+ +       IETVWG GY
Sbjct: 184 QLLDNIWGYEYIGDTRTVDVHIKRIREKIKDHVHWN--IETVWGIGY 228


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|322411860|gb|EFY02768.1| Transcriptional regulatory protein ciaR [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD +L++SI   L        V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   LKLLLVEDDLSLSNSIFDFLDDFADVTQVFD-GDEGLYEAESGIYDLILLDLMLPEKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I  PV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++R+ 
Sbjct: 61  QVLKELREKDIKIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++ V+L  K V+V G  I L GKE+ ++  L   +N  L K    + L+ 
Sbjct: 121 KFTDKNLAFGNVVVDLGKKEVQVDGQPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V++ K+RKKL       + ++T+   GY+L+ +
Sbjct: 181 FDSDTTISVVEVYVSKIRKKL-KGTDLVDKLQTLRSVGYILKSH 223


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + L      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L+ ++ G + I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGSSDG-DPIRTVRSAGYSL 225


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+    G   ++L +  E D ++LD+ L D+ GF 
Sbjct: 8   RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TPV  L+     +DKV+GL  G DDY++KPF+ EE+VARIRA++RR+ G
Sbjct: 68  VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSG 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +L+  GDL ++ D+  V   G  + L+  E++++  L L     L+K   L+H+
Sbjct: 128 SLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN-AAGGKN-----YIETVWGRGYVLR 222
           +      +  I++ +I  LR+K+ N    G +      I T  G GY+LR
Sbjct: 188 WQYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLLR 237


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +E  +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRQIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+++++   +V      I+LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGY 220


>gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I   LK           G +G+       +DA +LDLGL +I G 
Sbjct: 1   MRILLIEDDPHIGDGIAAGLKKLGMAADWFSDGLEGLAAATAAPYDAAVLDLGLPNIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R + ++ PV IL+   ++ D++ GL  GADDY+ KPF  EEL AR+  +VRR R
Sbjct: 61  DILQRWRESGVNLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G L+++  A+T  + G  + LT +E++++E+L       +++    + LY 
Sbjct: 121 GRADSGLKFGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   ++V I  LRKK+     G + I+T  G GY L
Sbjct: 181 WDQEVDSNAVEVHIHHLRKKI-----GASVIKTKRGLGYQL 216


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+K LAH +  +L+ E+  V +   G  G+EL +   +DA++LD+ L ++ GF
Sbjct: 1   MHILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +R   + +PV +L+   S+ED+V GL  GADDY+ KPF  EEL+AR+ A++RR  
Sbjct: 61  EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +   DL ++L  +    +G R I LT KE+ ++E L       LT+    + 
Sbjct: 121 RTFEVATQLRADDLILDL-VRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E    ++D++I  LR K+ +    +  I+TV G GY L
Sbjct: 180 VWRYDLEALSNVVDIYIHYLRDKI-DQGFTRPLIKTVRGIGYKL 222


>gi|253689077|ref|YP_003018267.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755655|gb|ACT13731.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD  L + + + L+ +  +V       D +        + ++LDLGL D  G 
Sbjct: 1   MNILLIEDDLDLGNGVRIALEDQGLDVIWVRRKVDALHQLDLCVPELVLLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ +LR      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  SLMASLRQQLKGIPVIILTARGTLQDRLTGLDAGADDYLVKPFVLAELLARVRALARRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I    LS+++  + V V    + LT  EY ++E L LR +  LT+  FL     
Sbjct: 121 GFQDEVIEIRGLSLHVPTRRVAVGTRNVDLTASEYALLETLMLRTDRVLTRR-FLEEKIF 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G+ Y+ TV G GYV+
Sbjct: 180 GAKENMSNPLDVHMGNLRRKI-----GEGYVRTVRGVGYVI 215


>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
           kansasii ATCC 12478]
          Length = 254

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I   +    D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  QILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++        I+D++I  LRKK+   A     I TV G GY+LR
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKID--ADRDPMIHTVRGIGYMLR 251


>gi|26989626|ref|NP_745051.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148547998|ref|YP_001268100.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24984509|gb|AAN68515.1|AE016483_6 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512056|gb|ABQ78916.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313499075|gb|ADR60441.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD      I   L S    V   D G +G+       +D I LD  L ++ G  
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++  LR  KI+TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR S 
Sbjct: 63  IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L +       + ++L   EY+++E L       +T+ M    ++ 
Sbjct: 123 PTTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   +IDV I +LRKK+ ++ G    I TV G GY + E
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224


>gi|312866663|ref|ZP_07726877.1| nisin biosynthesis regulatory protein NisR [Streptococcus
           parasanguinis F0405]
 gi|311097744|gb|EFQ55974.1| nisin biosynthesis regulatory protein NisR [Streptococcus
           parasanguinis F0405]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 132/225 (58%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL I+DD+ +   I   LK+ NF+V  T    + I +C F  FD I+LD+ +  I G E
Sbjct: 4   KILAIDDDEKILRLIANTLKANNFHV-ETRKNIEEINICDFTGFDLILLDV-MMPISGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R++R ++I+TP+  L+     ED + G+Q+GADDYI+KPF+ +EL+ARI+  +RR   
Sbjct: 62  ICRSIR-SQITTPILFLTAKDFEEDLLNGIQAGADDYITKPFSIKELIARIQMHLRREER 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H+    +  +++   D++ V  Q  RI LT +E+ ++ LL+  +N   + E   N+LY
Sbjct: 121 SHHSSKEEMESNITFYRDSQEVYYQSKRISLTKREFDLLYLLAKNENRIFSIEELYNYLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +++ I  +I ++R+K        + I+TVWG GY  ++N
Sbjct: 181 PVDSDAQLRSITEYIYQIRQKFK--IHQIDPIKTVWGGGYKWKKN 223


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 133/233 (57%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++++D++A+  S+   L    +++ + + GE  +++ +  + D +ILD+ +  + G 
Sbjct: 1   MKIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A     Q+ I   DL +N D + V V+G+R I LT  E+ +++LL       L++   
Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDV-VRGNRTISLTRTEFALLQLLMTNPRRVLSRSTI 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LR+K +   G    I TV G GYVLR+ A 
Sbjct: 180 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEQEGEPRLIHTVRGVGYVLRDTAP 230


>gi|160899673|ref|YP_001565255.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365257|gb|ABX36870.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 220

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  +A  +   L+ + F V             +   FDA +LDLGL D  G 
Sbjct: 1   MHVLLVEDNALVASGVRAGLQLQGFGVDTVASAGQADAAIRSSHFDACVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV +L+   ++  ++ GLQ+GADDY+ KPF+  EL AR+ A++RR+ 
Sbjct: 61  SLLARWRGQGLQVPVLVLTARDAVSQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  G++ +N  A  ++ QG  + L+ +E+ ++  L       L+ E   + LY 
Sbjct: 121 GRSVDWIELGEVRINPAAGHIQRQGRTVELSRREWSLLRALLQSPGRILSTEQLRDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++V +  LR+KL     G   +ETV G GY L
Sbjct: 181 YSQDVESNAVNVHVHHLRRKL-----GHELVETVRGEGYRL 216


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L   ++  L +E + V     GE+ ++  +    D ++LDL L  + G E
Sbjct: 4   RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    +  V +L+  SS  D+V GL+ GADDY++KPF+  ELVAR+RA +RR   
Sbjct: 64  VCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQL 123

Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R  A    +  D L ++   + V   G  +HLT +E++++  L+   +   T+   L  
Sbjct: 124 DRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLRE 183

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G D P   + +D  I +LR K+    G   YI TVWG GY
Sbjct: 184 VW-GIDYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGY 225


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R  + + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 122 H-AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + A S +   D       L++N+      + G  + LT  E+ ++ +L  RK + ++ E 
Sbjct: 124 YNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAEE 183

Query: 174 FLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++  ++E   K    I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEVW--QEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|260598649|ref|YP_003211220.1| transcriptional regulatory protein qseB [Cronobacter turicensis
           z3032]
 gi|260217826|emb|CBA32321.1| Transcriptional regulatory protein qseB [Cronobacter turicensis
           z3032]
          Length = 245

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIEDD  L + + +    + F+V      ED +        + I+LDLGL D  G 
Sbjct: 21  VKILLIEDDLDLGNGVRIAFADQGFDVIWVRRKEDALHQLDVCVPELILLDLGLPDGDGM 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 81  SLMAYVRQRFKGLPVIILTARGTLQDRLSGLDAGADDYLVKPFVLAELLARVRALARRSY 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I    LS+++  + V V    + LT  EY ++E L LR +  LT+      L+ 
Sbjct: 141 GFENEAIEIRGLSLHVPTRRVTVSARHVELTASEYALLETLMLRPDRVLTRGFLEERLF- 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G  Y+ TV G GYV+
Sbjct: 200 GAKENLSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 235


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  NF V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|255306708|ref|ZP_05350879.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  S+   L S++F     + GE+ + L     +D +ILDL L +I GF
Sbjct: 1   MKVLIVEDNKILLESVVEEL-SKHFETEKCEDGEEALYLINQNIYDLVILDLMLPNINGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R+  I TPV IL+   +++DKV     GA+DY++KPF  EELVAR+ AI+ R+ 
Sbjct: 60  DILKKMRINNIDTPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAIL-RTN 118

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +        S+ LD   K V ++   I L  K++ ++E   L K + L KE   + +
Sbjct: 119 GKIKERNGLEFKSLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  ++I++V++  LRKKLS   G   YI+T    GY+ 
Sbjct: 179 WGIDSDATIEIVEVYVSNLRKKLS-KYGYDKYIKTKRKVGYIF 220


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+   IEL+L+ EN+ V   + G+  ++L   +  D ++LDL L D  G++
Sbjct: 3   KILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   K + PV +LS  + + DKV GL+ GA+DY++KPF+  EL+ARI+ I+RR+  
Sbjct: 63  LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +S          I+  +L+ +L+++ V   G  + LT KE++++E L  R +   T++
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L   +      + + +D+ I +LRKKL + A    Y+ T++G GY L
Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|134294163|ref|YP_001117898.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137320|gb|ABO53063.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LAH I  +L+ E+F V     GE    + K   +DA++LD+ L  I G 
Sbjct: 1   MKLLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+   S++DKV    +GADDY+ KPF   ELVARIRA++RR  
Sbjct: 61  EVLARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +V GDL      +        + L  +E+ ++E L L+++ T++K   ++ ++ 
Sbjct: 121 GVGTAQLVCGDLVYAFGTREFRCGDALLALRRREHAILETLMLQQSKTVSKARLMDSVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DEP    ID++I +LRK L   AG    I T+ G GY+LR
Sbjct: 181 LDDEPSADAIDIYIHRLRKHL---AGSTAEIITLRGLGYILR 219


>gi|127514498|ref|YP_001095695.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639793|gb|ABO25436.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 227

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  LA  +  +L+ E FN+ +   GE G+ L    +FD I+LD+ L  + GFE
Sbjct: 3   QILLIDDDLGLAELLAQLLELEGFNLTLAHDGEAGLALALEQQFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ALR +K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  VLKALR-SKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRTSH 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++   D+ ++   + V  Q   + LTG E+ ++  +       L+K+    +
Sbjct: 122 QMDEQQPSILEFADIKLDPSRQEVLCQDQLLILTGTEFSLLYHMIQHSGEVLSKDNLSEN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +  P  + +D+ +  LRKKL   A G+  ++T+ G+GY+
Sbjct: 182 VLGKKLMPFDRSLDMHLSNLRKKLPERADGRPRVKTLRGKGYI 224


>gi|320106762|ref|YP_004182352.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925283|gb|ADV82358.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 225

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  +A  +E  L  E   V V+  G +G +L    +FDA +LD+ L ++ GF
Sbjct: 1   MNVLVIEDDFRIASLVERALIEEGHRVVVSGDGREGADLLLTGQFDAALLDIFLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  +  TP+ +L+ + ++   VR    GADDY+ KPF  E L+AR+ AI RR  
Sbjct: 61  EVLERVRTQQCKTPILVLTAVDAVPKIVRAFDLGADDYLVKPFIVEILLARVGAIARRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H++    TG + ++   +     G  I LT K++++++ L  RK    T+E  +   + 
Sbjct: 121 NHSEEAPETGSVVLDRGRRLALRHGKEIALTKKQFELLDTLMRRKGLITTREQLIEAGWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
            + + +   +DV+I  LR KL + +  G+  I TV G GY+ 
Sbjct: 181 IQADVKENTLDVYIHGLRAKLEDQSDKGQPLIRTVHGSGYMF 222


>gi|271500465|ref|YP_003333490.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344020|gb|ACZ76785.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L H + + L      V      ++     + +  D  I+DLGL    G 
Sbjct: 1   MRILVIEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPIEDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  ++  P+ +L+   S ++KV  L++GADDY++KPF+ EE+VAR++A++RR+ 
Sbjct: 61  SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V G  + LT  EY ++E L       ++KE  +  LY 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEPVKLTAFEYTIVETLIRNNGKVVSKESLMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL  +A   + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QSANSHDVITTVRGQGY 218


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I   +KS  +       G D     + +  D ++LD  L D+ G  +
Sbjct: 8   ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  +R  +   + PV +L+  +  EDKV GL  GADDYI+KPF+ +ELVARI A++RR  
Sbjct: 68  LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+SL+  G ++++ ++  V + G  + +   E+++++ L    +   ++   L+ ++
Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + + E + +DV + +LRK L    G +N + TV G GY+L E  K E
Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK---GQENLVRTVRGMGYMLSEKDKSE 233


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  + GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+   
Sbjct: 66  CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A     ++  G+L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 AAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +V+ +DV + +LR+K+ +     N+I T  G GY    N
Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|171059305|ref|YP_001791654.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776750|gb|ACB34889.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 239

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 5/185 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           + A +LDLGL  I G +VL+A+R   + TPV +L+   ++  ++  L +GADDY+ KP +
Sbjct: 45  YTAAVLDLGLPRIDGLDVLQAVRRRGVKTPVLVLTARDAVPQRIETLDAGADDYVVKPID 104

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
             EL AR+RA+VRRS G  Q LI    + ++  A+ V + G  I L+ +E+ ++  L LR
Sbjct: 105 LHELAARLRALVRRSHGQVQDLISVNGVDLDPGAREVRLDGDPIKLSTREFDLLHALMLR 164

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               LT+E   NHLY   +E     ++V +  LR+KL N       I TV G GY     
Sbjct: 165 PGRVLTREQLENHLYGWGEEVGSNTVEVHVHHLRRKLGN-----QRIRTVRGVGYAFAPP 219

Query: 225 AKDET 229
              E 
Sbjct: 220 PSSEA 224


>gi|329938522|ref|ZP_08287947.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302495|gb|EGG46386.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +A  +  + + E +       GE+ +     +  D ++LDL L  + GF
Sbjct: 4   VRLLVVDDDPPIADLVATVARYEGWEAVTAYSGEEALTRAAAFRPDIVVLDLMLPGVDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR A +S PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS 
Sbjct: 64  GVLDRLRGAGMSVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSL 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +S++   DL+++ D + V      + LT  EY ++  L  +    LTK   L+ +
Sbjct: 124 GPGGPRSVLRVADLTMDEDTREVRRGDRLLALTPTEYDVLRCLLRKSPAVLTKAQILDDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRENAK 226
           +         ++++ + +LR+KL    GG    I TV G GYV R  A+
Sbjct: 184 WQYGFGGRSNVVELVVSRLRRKLEATDGGAVPLIHTVRGVGYVARRAAE 232


>gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   L    +   V   G+  I     +  D I LDLGL D+ G +V
Sbjct: 6   ILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHNPDVIFLDLGLPDMDGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R      P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R  +RR    
Sbjct: 66  IRKVRTWT-EIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVSLRRMALM 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S  H+  +   G L+++  A+T  + G  +HLT  EY++++LL+  +   LT       
Sbjct: 125 KSADHSDPVFRNGALTIDYPAETASLGGQELHLTPIEYKLLKLLAKYEGKVLTYAYITKE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E E+  + VF+  LR+KL        +I+T  G GY
Sbjct: 185 IWGRTTESELASLRVFMATLRRKLEPDRDSSQFIQTHIGIGY 226


>gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 257

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E + V +   G + +        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 152 QQTPPADETLKVGDLRLDTASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRSEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   +G +  I TV G GY+LR 
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKID--SGREPMIHTVRGVGYMLRP 255


>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
 gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLD-ASVDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QNFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQKQTDSTTSPTLQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S   +I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I+TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223


>gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 226

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +I   L+ + + V     G+   EL     +D ++LDL L  + G 
Sbjct: 1   MRILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR       + ILS  SS+ DKV GL  GA+DY++KPF  EEL ARIR+++RRS 
Sbjct: 61  DILSDLRKTNKDMKILILSARSSVSDKVLGLDIGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++V  ++S++   +TV V G  + +T KE  ++E   L ++  +++E  + H+++
Sbjct: 121 VQENSVLVWNEISLDTVGRTVSVSGIDVTMTKKELALLEYFLLNQSKVISQEELMEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     + V I  LRKKL   A G + I T  G GY L
Sbjct: 181 MEADSFSNAVRVHIASLRKKL-KIALGYDPIATKIGEGYFL 220


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  LK E + V V   GED + L +   +  +ILD+ +  I G 
Sbjct: 4   IRVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-E 172
                SR   QSLI    L+++L   TV   G  I LT KE+++++  +       TK +
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F N   D   E +  ++ V I +LRKK+        +I+TVWG GY
Sbjct: 183 LFRNAWSDQYIEDDNTVM-VHIRRLRKKIEPDPSDPQFIQTVWGIGY 228


>gi|332707207|ref|ZP_08427260.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
 gi|332353941|gb|EGJ33428.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
          Length = 830

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ALA ++  +L+ +N+ V +   GE+G E  + + +D I+L++ L  + G 
Sbjct: 1   MRLLLVEDDNALALTLSKVLREQNYIVNIAGDGEEGCEYAQAFTYDLIVLEVDLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR A     + +L   ++  ++V+ L + ADDYI KPF  + L+ RIR ++R   
Sbjct: 61  SLCKRLRQASYDRGILLLLSQAATAEQVK-LNAEADDYIVKPFTAKNLLTRIRTLLRHHS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                L+  GD  V LD  T EV  +G  +HL+ KEY ++EL         ++   L HL
Sbjct: 120 VSGLRLLEWGD--VCLDPSTCEVTYKGQLLHLSPKEYGLLELFLSHPRRVFSQSFILGHL 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   D P  + +   +  LR+KL +     + IETV+G GY L+
Sbjct: 178 WSFEDPPSPETVRAHVKGLRRKLKSVE-ADDMIETVYGMGYRLK 220



 Score = 50.4 bits (119), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L ++DD  +  SI   L+     +   +  +   E  +    D +ILDL +    G E
Sbjct: 536 KVLAVDDDPLVLESIRHFLQPLGVQIITLEEPDQFWEQLEATGPDLLILDLDMPQFNGIE 595

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R  +I    P+ +L      E   R  Q+GADDYI KP  K ELV R+   + R+
Sbjct: 596 LCQVVRNDRIWHGLPILLLCEHLDSETIHRIYQAGADDYIFKPITKSELVTRVFHRLERT 655

Query: 120 R 120
           +
Sbjct: 656 K 656


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   L++E + +     GE  +++ +  + D +ILDL L  + G E
Sbjct: 6   KILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  + + PV +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 66  VCREIR-KQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124

Query: 120 -RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                Q +    IV GDL ++ DA  +   G  I LT +E++++  L+      +T+E  
Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D     +V+ +DV I +LR+K+ +      YI T  G GY+L+
Sbjct: 185 LETVWDYDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLLK 232


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + ++  +    D ++LDL L +  G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +++   S  DKV GL+ GADDYI+KP++  ELVARIRA++RR+  
Sbjct: 63  VCRELRTTS-NVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++    +G + +++D   V V G  I L  KE++++E+        LT+   ++ +
Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGY 222


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   + V+    G + + L    + D +ILD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 71  VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 130

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN----YIETVWGRGYVLRE 223
           +   E +  I++ +I  LR+KL       N     I+T  G GY+LR+
Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRD 238


>gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A+ ++  L    F+V + + GEDG+ L     +  IILD+ L    G+
Sbjct: 1   MRILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS    + D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+Q++ L+  R+   L++      ++ 
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +    K  I+T+ G GYVL E A
Sbjct: 181 INFDTDTNVVDVAIRRLRKKVDDPFPVK-LIQTIRGVGYVLDETA 224


>gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
 gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD +    ++  L    ++V +   G DG+ L     +DA+ILD+ L  + G+
Sbjct: 1   MRILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K   PV  L+    ++D++ GL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QVMEVLR-KKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL++++  + V  Q   I LT KE+ +++LL  R+   L++ M  + ++D
Sbjct: 120 AREPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+  +   K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDRSFEVK-LIHTVRGIGYV 218


>gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 18  MKILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+      K  + TV G GY+L+
Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGF-DKPILHTVRGAGYMLK 239


>gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
 gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+ ++       GE  +     +  D I+LDLGL DI G EV
Sbjct: 6   ILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHNPDIILLDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IHRVR-SWSNLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLAAL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + +++   G L V+  A    + G  +HLT  EY+++ LL       LT      
Sbjct: 125 QVGAANTEAVFTNGKLKVDYAAGCAFLDGQELHLTPSEYKLLCLLCKNVGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKKL    G   YI+T  G GY
Sbjct: 185 QIWGRSWENDVASLRVFMATLRKKLEKEPGSPQYIQTHIGVGY 227


>gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60]
          Length = 224

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + ++     V   +  ++     +    D  I+DLGL    G 
Sbjct: 1   MRILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLPGEDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +I+ P+ +L+   S ++KV  L++GADDY++KPF+ EE++AR++A++RR+ 
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I       +L  + + V    I LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL N   G + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQNEYPG-DVITTVRGQGY 218


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +    + E F V  T  GED +   +   +D +ILD+GL  I GF 
Sbjct: 3   RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV +L+  +   D+V GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 63  VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122

Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLT--GKEYQMIELLSLRKNTTLTKEMF 174
            ++     GD +     + LD          + LT   KE+ ++  L+       T+E+ 
Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++   +  + + +DV I +LR KLS      N I+T WG GY
Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGY 227


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           LL+EDD  LA      L+     V +VTD G  G++      FD ++LDL L    G EV
Sbjct: 21  LLVEDDLRLAAFTREYLEGHGVAVVHVTD-GRRGLDEALAGRFDVVLLDLMLPGKDGLEV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G 
Sbjct: 80  CRELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 138

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A   +  +  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +    
Sbjct: 139 AGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAG 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 199 GSAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240


>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELC--KFYEFDAIILDLGLTDI 57
           MR+LL+ED+  L  +I+  L  + + V +V D G D       ++ ++   I D  L  I
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLTQQKYLVDWVLD-GNDAWAYLENQWTQYTLAIFDWMLPGI 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+ + LR  +   PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ R
Sbjct: 60  SGLELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQR 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH-----RIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS       +  G+L+++     V  Q +      I LT KE+Q++E      N  +T E
Sbjct: 120 RSPQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQEISLTNKEFQLLEYFMKHPNQIVTTE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              N L++   EP   ++   +  LR+KL+N+  G N IET+ G GY L
Sbjct: 180 QIRNQLWEVSAEPISNVVAAQMRLLRRKLTNSGCG-NMIETLHGTGYRL 227


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLGSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +   +E   K E +   +   G++ +++ +    D I+LD+ +  I GF
Sbjct: 1   MKVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI+AI+RR +
Sbjct: 61  EVCRVIRKTS-NVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQ 119

Query: 121 GHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++L V    +L +NL   TV +    + LT KE +++  L+ +K+   +++M LN L
Sbjct: 120 PKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +D  I +LR KL     GK  I+T+WG GY
Sbjct: 180 WGYDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGY 220


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 14/227 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL++EDD+ +A   EL       N Y  D+  DG + C+      + A+I+DL L    
Sbjct: 3   KILIVEDDENIA---ELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKN 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+++R +R  +   P+ ++S  +   DK+RGL  GADDY++KPF+  EL+AR+++ +RR
Sbjct: 60  GFDIIRDVRSTQ-EVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRR 118

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 ++   + L   G L ++  A+ V V G  + LT KEY ++  L+   N   TKE
Sbjct: 119 YERLKGNKTQEEILSFRG-LEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKE 177

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + ++   D  ++  + V I ++RKK+       +YIET+WG GY
Sbjct: 178 HLFDTIWGVDDYGDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGY 224


>gi|271502259|ref|YP_003335285.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345814|gb|ACZ78579.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALINSAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLGRWRRNNYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219


>gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 219

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD A+A  +   L  E + V   D G   +   +   FD I+LD+GL D  GFE+
Sbjct: 4   ILLIEDDPAIADPLSYALAREQWQVVWHDTGIAALAALQAQRFDCIVLDVGLPDTDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + +TP+  LS  +   D++ GL+ GADDY  KPF+  EL++RI+A+ RRS   
Sbjct: 64  CRRIR-QQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRRSNET 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +       N  A+T+   G  + LT  EY+++  L      T  ++  +N L+D  
Sbjct: 123 ETASV----WQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWDHP 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  + + +D  I  LR+KL   A   + I T  G GY L
Sbjct: 179 DHIDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHL 217


>gi|229135927|ref|ZP_04264689.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228647540|gb|EEL03613.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMIE 225


>gi|229193368|ref|ZP_04320318.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228590169|gb|EEK48038.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
          Length = 220

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E + +       +G+ +    ++D IILD     I G E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGYFILKLHNENEGLNIIYEQDWDIIILDWDSLSISGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R+ K +TP+ I++   S +D V GLQ+GADDYI KPF KEELVAR++AI+RRS  + Q
Sbjct: 61  QIRLVK-TTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDCNQQ 119

Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 KEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 NVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMIE 220


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D++ +   ++  L  E F   +   G   + L +   +D I+LD+ L  + G E
Sbjct: 4   RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 64  VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +       L +  +   V      + LT KEY+++  L    N TLT+E 
Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      E +++DV I KLR+K+ +      YI+T+ G GY  +E   D T 
Sbjct: 184 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 240


>gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51]
 gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LLIEDD+ +++ + + LK E + V V +  ++G+ L      D ++LDLGL D  G 
Sbjct: 5   LTVLLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGLPDKDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R +R     TP+ ++S     ++K+  L  GADDYI+KPF+  EL+ARIRA+ RR +
Sbjct: 65  VVIREIR-GFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQ 123

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + S+     L+V+ + + V V G+ +HLT  EY++++L+   K   LT    + 
Sbjct: 124 QQLAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVK 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   +  + K I VF+  LR+K+        +I T  G GY
Sbjct: 184 EVWGYSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGY 226


>gi|240142644|ref|YP_002967157.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240012591|gb|ACS43816.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 225

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD A A  I   L      V     G DG    +   ++AIILD  L  + G  
Sbjct: 3   KLLLIEDDAATAEEILGDLHGRGHEVAWAATGPDGAAAARSGGWNAIILDRMLPGLDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR     TP  +LS +  +++++RGL++G DDY+ KPF   EL ARI A++RR   
Sbjct: 63  LLRDLRGVGDRTPALVLSALGDVDERIRGLRAGGDDYLGKPFVLAELAARIEALLRRPTD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ +  G L ++L A T       + L  +E +++E L  R    +T+ M    +++ 
Sbjct: 123 ARETFLRVGTLELDLIAGTGRRGRRDLELLPRELKLLEYLMRRPGQVVTRAMMFEEVWNY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R  P+  +IDV + +LRKKL  A G    I  V G G+ L
Sbjct: 183 RFAPKSNLIDVHVGRLRKKL-EAEGEPMLIHNVRGEGFTL 221


>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR R
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR-R 119

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G    A  + V GDL V+  A+ V +      LT KE+ ++E L +R    ++K   L H
Sbjct: 120 GQGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEH 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  I++V++  LR+KL         I TV G GY L
Sbjct: 180 VWDFAYDGDPNIVEVYVSALRRKLR-----AGLIRTVRGAGYRL 218


>gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLD-----VDIIQTVRGLGYLL 216


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V RA+R      P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R  
Sbjct: 64  VCRAIRHVS-DVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I   DLS+++    V+  GH I LT  E+ ++  L+       ++E  L  ++ 
Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGY 221


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    +
Sbjct: 122 GKAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|222107038|ref|YP_002547829.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738217|gb|ACM39113.1| two component response regulator [Agrobacterium vitis S4]
          Length = 226

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+KALA  +  +L+   + V     G           FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNKALADGLSAILRGTGYAVDTVSDGASADAAIATENFDLVILDLNLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + IL+   + EDKV+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  EVLRCVRARHDKVAILILTARGTPEDKVKGLDLGADDYMIKPFDIGEFEARVRMLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  G +S++L++++    G  + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSSMVSYGAVSLDLNSRSFSAAGVPLDIPARELGLLEVLFMRAGKVVAKEAIIQSLAA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+     I+ +  +LRK+L   A     + T  G GY L + 
Sbjct: 181 FDDDLSANAIEQYASRLRKRL---APHGLTVRTARGIGYYLEKT 221


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
           5463]
          Length = 228

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG++ I+TVWG GY
Sbjct: 180 FERVWKQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 224


>gi|260441224|ref|ZP_05795040.1| BasR [Neisseria gonorrhoeae DGI2]
 gi|291044561|ref|ZP_06570270.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291011455|gb|EFE03451.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 224

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G           +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAVSASLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R A  + PV I++    +  ++ GL  GADDYI KPF+  E  AR+RA++RR  
Sbjct: 61  DVLSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAEFKARMRAVLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+ +  G LS+N     VE+  +G ++ L+ +E+ +++ L  R    L++    + +
Sbjct: 121 GQAQACLSNGALSLNPATYQVEIIAEGRQVALSNQEFSVLQALLARPGVILSRSDSEDKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
           Y    E E   +D  I  L KKL     GK  I+ V G G+++ R++A
Sbjct: 181 YGWGGEVESNAVDFLIHGLCKKL-----GKESIQNVRGVGWLMPRQDA 223


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             +    ++  G+L++++    V V G  + LT  E++++  LS       ++    E  
Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L + ++G +    + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFEDPTK 233


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F+V     G++ + L   ++ D ++LD+ L D+ GF+
Sbjct: 7   RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  ++  PV  L+  S++ED++ GL +GADDY+SKPF+ EE+V RIRAI+RRS+ 
Sbjct: 67  VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G    ++   DL ++ DA  V      I L+  E++++  L +     ++K   L+
Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I++ ++  LRKK+ + A     I T+ G GY LR
Sbjct: 187 RVWNYDFGGDGRIVESYVYYLRKKVDSRAPA--LIHTIRGVGYTLR 230


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 28  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 88  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 208 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 245


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE  +     Y    I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +  I   D         +++NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      + + +DV I +LR+K+ + +     + TVWG GY
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSDWS--LSTVWGIGY 229


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+  ++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 235


>gi|284005671|ref|YP_003391491.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
 gi|283820855|gb|ADB42692.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 226

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 135/226 (59%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED+ +L  +++  L+ E + V   T+L    +++   Y++D +++D+ L D  G
Sbjct: 1   MKILLIEDEPSLLVALQQYLEGEQYQVSTATNLRTASLKVHD-YDYDCVVVDITLPDGNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  L+ A  S  + I+S  +S++DK+ GL+ GADDY++KPF+  EL ARIR+++RR 
Sbjct: 60  LAIVNELKEAHSSAGIIIVSAKNSLDDKLSGLELGADDYLTKPFHLPELNARIRSLMRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +  G +++    K V V    + +TGKEY+++  ++  KN  L+K + + H++
Sbjct: 120 QHAGETQLTCGAITIVPHRKQVLVANQPMDVTGKEYELLLFMATNKNRLLSKAIIVEHVW 179

Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               DG D  +   +   +  LR+KL + AG  +YI T +G GY+ 
Sbjct: 180 GDYMDGIDSHD--FLYTHVRNLRRKLLD-AGSPDYITTRYGAGYIF 222


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 126/232 (54%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++    ++  G+L++++    V V G  I LT  E++++  LS       ++    E  
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L + ++G +    + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+   F V     GE+ +E   F +   IILDL L  + G E
Sbjct: 4   KILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR+  
Sbjct: 64  VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTDL 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V GDL +  +     V    + LT KE++++  L+  K   LT++  L+
Sbjct: 124 AQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++     + +I+DV I  LR+K+        YI+TV G GY L E  +
Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEEPRR 233


>gi|282895678|ref|ZP_06303803.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9]
 gi|281199372|gb|EFA74237.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9]
          Length = 237

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPG 59
           IL++EDD  L  S+   L  E + V     GE     ++      +D II+D+ L  + G
Sbjct: 4   ILVVEDDYYLTESLTEALTMERYEVECVKDGEAAWRRLQDLPVVNYDLIIMDITLPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR    + P+ +L+   +I DK+ GL +GAD Y+ KPFN +EL+A++RA++RR 
Sbjct: 64  IRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLRRG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLNHL 178
           +    + +  GDLS++     V      IHLT KE+ ++E L LR N  + T+   ++ +
Sbjct: 124 KPVINNTLTWGDLSLDFSKYEVLYGRKPIHLTPKEFALMEAL-LRCNGRISTRSSLIDQI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     PE + I  +I  LR KL N    K+ IET+ G GY L+
Sbjct: 183 WASESPPEEETIKTYIRNLRAKLINVGAPKDLIETIHGVGYRLK 226


>gi|210621111|ref|ZP_03292474.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275]
 gi|210154932|gb|EEA85938.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275]
          Length = 224

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL +ED+K L  SI   L S++F+V   + GE+ + + +   +D ++LDL L  + G 
Sbjct: 1   MKILAVEDNKTLLDSIIEEL-SKHFDVEGCEDGEEALYMIEQDIYDLVVLDLMLPGMNGM 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L+  R   I TPV IL+   +++DKV   Q+GA+DY++KPF  EELVAR+ AI+R + 
Sbjct: 60  EILKNARNKGIDTPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   D+ ++   K V +    I L  K+Y ++E   + +   L KE   + ++
Sbjct: 120 KLTEKTGLQFKDMYIDTSEKRVFIGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  ++I++V++  LRKKLS   G   YI+T    GY+L E+
Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSK-FGYDKYIKTKRKVGYILDED 223


>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  +F V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR   
Sbjct: 63  VCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIGD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     + ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 EKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  YD   +P  K+IDV I +LR K+ +      +IET+WG+GY
Sbjct: 183 LIWGYDYFGDP--KLIDVNIRRLRAKIEDNPSEPEFIETIWGKGY 225


>gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 219

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++ D +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A  IE  LK+E   +   + G+  +E    YE D +ILD  L    G 
Sbjct: 1   MRILLIEDDPRIASFIERGLKAEGHQIQHLNDGQYAVETVISYEPDLLILDRMLPHCDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            + + +R A I   + +LS +  ++++V+GL++GADDY++KPF+ EEL+AR+ A+ RR S
Sbjct: 61  TICQQIRSAGIDVRILMLSALGDVDERVKGLRTGADDYLAKPFHFEELLARLDALQRRHS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL + L    V      I LT KE  ++ELL  +     ++E  L +++
Sbjct: 121 ESSPLPTLQVADLVLCLPTMQVTRDNQLIELTAKELSILELLMNKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P   ++DV++ +LRKK+ +       ++T  G GY L+ +
Sbjct: 181 GMHQDPLTNVVDVYMRRLRKKIDDPFTAP-LLKTKRGMGYYLQAD 224


>gi|169837195|ref|ZP_02870383.1| two-component response regulator [candidate division TM7
           single-cell isolate TM7a]
          Length = 205

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/204 (36%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ L   I   L  E + V     G D +E     E+D I+ D+ L  I GF
Sbjct: 1   MRILVVEDEQNLNDIIVKRLILEKYGVDTCFNGNDALEYIFSTEYDVIVSDIMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L+ +R   I TPV +L+ +  IED+V+GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 61  EILKRIREKGIKTPVLLLTALDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNS 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A ++    +L+VN ++  V      I L+ +E+ ++E +   K   L++E    
Sbjct: 121 TNGNSNASNIFSIANLTVNCNSHDVFRDDVPIKLSTREFTILEYMIRNKERVLSREQIEQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKK 200
           H+++   E    +IDV+I  LRKK
Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRKK 204


>gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  +   L  +   V     G DG  L   +++D I+LD+ L    GF
Sbjct: 1   MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  AVLRALRAVK-QTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L ++L A+       RI LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 KQEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++V I +LR K+ +A      + T+ G GYV+
Sbjct: 180 MNFDSNTNVVEVAIKRLRDKI-DAPFSPKLLHTIRGMGYVM 219


>gi|159037095|ref|YP_001536348.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915930|gb|ABV97357.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 222

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  +PG 
Sbjct: 1   MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMPGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   +T       + LT KE+ ++  L       ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   I+ V +  LR+KL    G    IETV G GY + E A
Sbjct: 181 ANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGYRVAEAA 221


>gi|251789546|ref|YP_003004267.1| DNA-binding transcriptional regulator PhoP [Dickeya zeae Ech1591]
 gi|27526279|emb|CAD33237.1| PhoP protein [Erwinia chrysanthemi]
 gi|247538167|gb|ACT06788.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 222

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + L      V      ++     + +  D  I+DLGL    G 
Sbjct: 1   MRILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPIEDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  ++  P+ +L+   S ++KV  L++GADDY++KPF+ EE+VAR++A++RR+ 
Sbjct: 61  SLIRRWRSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V G  + LT  EY +IE L       ++KE  +  LY 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGEAVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL  +A   + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QSANSHDVITTVRGQGY 218


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 67  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 126 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 185 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 229


>gi|15608167|ref|NP_215543.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Rv]
 gi|15840457|ref|NP_335494.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31792218|ref|NP_854711.1| transcriptional regulatory protein KdpE [Mycobacterium bovis
           AF2122/97]
 gi|121636956|ref|YP_977179.1| putative transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148660809|ref|YP_001282332.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148822236|ref|YP_001286990.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|215402842|ref|ZP_03415023.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|215410630|ref|ZP_03419438.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426309|ref|ZP_03424228.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T92]
 gi|215429888|ref|ZP_03427807.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|218752699|ref|ZP_03531495.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|219556895|ref|ZP_03535971.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T17]
 gi|224989428|ref|YP_002644115.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253799943|ref|YP_003032944.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|254231318|ref|ZP_04924645.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|254550012|ref|ZP_05140459.1| transcriptional regulator kdpE [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260185938|ref|ZP_05763412.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|260204245|ref|ZP_05771736.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289446608|ref|ZP_06436352.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289555191|ref|ZP_06444401.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289569007|ref|ZP_06449234.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289573667|ref|ZP_06453894.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289744763|ref|ZP_06504141.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289749559|ref|ZP_06508937.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289753088|ref|ZP_06512466.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289761163|ref|ZP_06520541.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|297633554|ref|ZP_06951334.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
 gi|297730539|ref|ZP_06959657.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           R506]
 gi|298524524|ref|ZP_07011933.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775163|ref|ZP_07413500.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|306781922|ref|ZP_07420259.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|306783723|ref|ZP_07422045.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|306788078|ref|ZP_07426400.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|306792411|ref|ZP_07430713.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|306796814|ref|ZP_07435116.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|306802700|ref|ZP_07439368.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|306806879|ref|ZP_07443547.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|306967079|ref|ZP_07479740.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|306971270|ref|ZP_07483931.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|307078999|ref|ZP_07488169.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|307083559|ref|ZP_07492672.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|313657868|ref|ZP_07814748.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           V2475]
 gi|1870001|emb|CAB06852.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           tuberculosis H37Rv]
 gi|13880629|gb|AAK45308.1| DNA-binding response regulator KdpE [Mycobacterium tuberculosis
           CDC1551]
 gi|31617806|emb|CAD93915.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN KDPE [Mycobacterium
           bovis AF2122/97]
 gi|121492603|emb|CAL71071.1| Probable transcriptional regulatory protein kdpE [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|124600377|gb|EAY59387.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           C]
 gi|148504961|gb|ABQ72770.1| transcriptional regulatory protein KdpE [Mycobacterium tuberculosis
           H37Ra]
 gi|148720763|gb|ABR05388.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           F11]
 gi|224772541|dbj|BAH25347.1| putative transcriptional regulatory protein [Mycobacterium bovis
           BCG str. Tokyo 172]
 gi|253321446|gb|ACT26049.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           1435]
 gi|289419566|gb|EFD16767.1| transcriptional regulator kdpE [Mycobacterium tuberculosis CPHL_A]
 gi|289439823|gb|EFD22316.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN 605]
 gi|289538098|gb|EFD42676.1| transcriptional regulator kdpE [Mycobacterium tuberculosis K85]
 gi|289542761|gb|EFD46409.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T17]
 gi|289685291|gb|EFD52779.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           02_1987]
 gi|289690146|gb|EFD57575.1| transcriptional regulator kdpE [Mycobacterium tuberculosis T92]
 gi|289693675|gb|EFD61104.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           EAS054]
 gi|289708669|gb|EFD72685.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           GM 1503]
 gi|298494318|gb|EFI29612.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216312|gb|EFO75711.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu001]
 gi|308325376|gb|EFP14227.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu002]
 gi|308331505|gb|EFP20356.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu003]
 gi|308335311|gb|EFP24162.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu004]
 gi|308339119|gb|EFP27970.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu005]
 gi|308342791|gb|EFP31642.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu006]
 gi|308346700|gb|EFP35551.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu007]
 gi|308350615|gb|EFP39466.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu008]
 gi|308355248|gb|EFP44099.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu009]
 gi|308359203|gb|EFP48054.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu010]
 gi|308363105|gb|EFP51956.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu011]
 gi|308366769|gb|EFP55620.1| transcriptional regulator kdpE [Mycobacterium tuberculosis SUMu012]
 gi|323720527|gb|EGB29609.1| transcriptional regulator kdpE [Mycobacterium tuberculosis
           CDC1551A]
 gi|328459686|gb|AEB05109.1| transcriptional regulator kdpE [Mycobacterium tuberculosis KZN
           4207]
          Length = 226

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +  ++ + L    + V     G   +     +  D +ILDLGL D+ G +V
Sbjct: 4   VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSGIDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   ++ PV +LS  +   DKV+ L +GADDY++KPF  +E +AR+RA VRR+   
Sbjct: 64  LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A   Q +I T   +V+L  K V   G  +HLT  E+ M+E+L+  +   + +   L  ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFSDCY-ILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 263


>gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
 gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
          Length = 219

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G +S++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSGFIRTVHGIGYTL 216


>gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +  +L    + V +   GEDG  L +   +DA++LDLGL  I G 
Sbjct: 1   MRILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++ R    + PV IL+      +KV G  +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + I  G L V+  A    V G  I LT  EY+++  L   +   + +   + H+YD
Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LR+K+     G++ I+T  G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRRKI-----GQDRIQTERGLGYRL 216


>gi|104781224|ref|YP_607722.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110211|emb|CAK14918.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD      I   L S    V   D G +G+       +D I +D  L ++ G  
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLSKAIAGGYDLITVDRMLPEVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++  LR  KI+TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR S 
Sbjct: 63  IVTTLRSLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNST 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L +         ++L   EY+++E L       +T+ M    ++ 
Sbjct: 123 PMTQTRLQVADLELDLISHEARRGEQSLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   +IDV I +LRKK+ ++ G    I TV G GY + E
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQTPLIRTVRGSGYAIAE 224


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++ +   ++L L+ E F V     G+  +++    E++ IILDL L  I G+
Sbjct: 4   IRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V + +R  K   P+ +L+      DKV G + GADDY+ KPF+  ELVAR++A++RR  
Sbjct: 64  TVCKEVR-KKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLG 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G  Q+L   G L +  +++TV   G  + LT KE+ ++  L+  K    T+E  L  +
Sbjct: 123 PKGPEQTLEFPG-LVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +       ++ +D  I +LR+KL  +    +YI TVWG GY
Sbjct: 182 WGYDFFGSLRTVDTHIKQLREKLGRSKAA-SYITTVWGVGY 221


>gi|219854708|ref|YP_002471830.1| hypothetical protein CKR_1365 [Clostridium kluyveri NBRC 12016]
 gi|219568432|dbj|BAH06416.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 234

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+   I   L+++ +  +  + G   I      + D IILDLGL D+ G E+
Sbjct: 2   ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R  +RR R  
Sbjct: 62  IKKVRTWS-NVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYD 120

Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++ L+      +   L ++ +A  V + G  +HLT  EY++I LL+      LT    L+
Sbjct: 121 SKKLLKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILH 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G    ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 181 EIW-GNYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGY 222


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237


>gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
 gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia
           frederiksenii ATCC 33641]
          Length = 223

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY    N
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQAEHEGE-VITTIRGQGYRFDAN 223


>gi|325110443|ref|YP_004271511.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324970711|gb|ADY61489.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED   L  +++L+L++E   V   D GE G E      FDAI+LDL L    G +
Sbjct: 3   RILIIEDQLKLQRNLQLLLETEGHEVVAVDSGETGYETAVAETFDAILLDLNLPGRDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR   I TP+ I++   SIE++V GL  GADDY+ KPF   EL+AR+RA++RR   
Sbjct: 63  VLAALRSQGICTPLLIITARDSIEERVAGLDRGADDYLIKPFAHAELLARLRALLRRGAS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   D+ VN+  +TV   G  + L+ +E++++E L   KNT +T+EM    ++  
Sbjct: 123 TTNRLLHCRDVEVNVLLRTVTRGGVELDLSQREFELLEFLVRHKNTDVTREMLAREVWKE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   IDV I  LR+K+        +I T+ G GY +R+
Sbjct: 183 PGGMLTNAIDVCINGLRRKVER-ENTPQFIVTLRGVGYTVRD 223


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 122 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 229


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F + V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|153954095|ref|YP_001394860.1| KdpE [Clostridium kluyveri DSM 555]
 gi|146346976|gb|EDK33512.1| KdpE [Clostridium kluyveri DSM 555]
          Length = 238

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+   I   L+++ +  +  + G   I      + D IILDLGL D+ G E+
Sbjct: 6   ILVVEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R  +RR R  
Sbjct: 66  IKKVRTWS-NVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYD 124

Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++ L+      +   L ++ +A  V + G  +HLT  EY++I LL+      LT    L+
Sbjct: 125 SKKLLKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILH 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G    ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 EIW-GNYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGY 226


>gi|146300485|ref|YP_001195076.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146154903|gb|ABQ05757.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M+ILL+EDD  L+  I     ++ F    T   +  + L K+  YE+D IILD+ +  I 
Sbjct: 1   MKILLLEDDFTLSKEISAFFTTKQFEC--TPYYDGSLLLKKYFPYEYDLIILDINVPGIN 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R     TP+ +L+  S IEDK+    SGADDY+ KPF+ EEL ARI +++RR
Sbjct: 59  GIEVCKGIREIDKKTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRR 118

Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                Q+   I+  DL +  D   V   G  I LT KE+++I +L+  K   L+K+    
Sbjct: 119 KEIPQQTEKKIIIEDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+D   E     I+V+I  LRKK+      K  I+T  G GY L
Sbjct: 179 KLWDYHIETNQNTIEVYINFLRKKIDKDHETK-LIKTKIGYGYYL 222


>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
 gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
          Length = 232

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIV-----TGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V     T D   L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNVDQGAPTLDVDCLQLNPGRQEATFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|254559323|ref|YP_003066418.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
 gi|254266601|emb|CAX22371.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens DM4]
          Length = 220

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F A++LDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALATSGFAAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +    + ++     V + G  I ++ +E+ ++  L  R +   +K      LY 
Sbjct: 121 GRAAACLEHAGIRLDPAELAVTLHGRPIPVSRREFMVLAALMERPSVLRSKGELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK+ IETV G GY +R  A
Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKHTIETVRGLGYRMRAPA 220


>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L  ++ + L +  F V     G + +      +   ++LDLGL D+ G 
Sbjct: 5   VRVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR    + PV +LS  S   DKV  L +GADDY++KPF  EE +AR+RA VRR  
Sbjct: 65  TVLEGLR-GWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGA 123

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            S G  +  +V  G   V+L AK V   G RIHLT  E++++E+L   +   ++++  LN
Sbjct: 124 VSSGLPEVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V++  LR+KL +      ++ T  G GY
Sbjct: 184 SVWGPTYLGQSNYLRVYLASLRRKLEDDPVHPRHLITEAGMGY 226


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F  +    G   +E+ +  + D ++LDL L  I G E
Sbjct: 22  RILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGIDGIE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   PV +L+  +   D VRGL+SG DDY+ KPF   ELVAR+RA +R    
Sbjct: 82  VCRLIR-AESDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   D+++++    V     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 200

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 201 RHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGY 238


>gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
 gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
          Length = 234

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD A+A+ I++ L ++ +   +   G   ++     + D  ILDLGL DI G E
Sbjct: 4   RILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAITMKPDVYILDLGLPDIDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           ++  +R +   TP+ ++S      DK+  L +GADDY++KPF+ EEL+ARIR  +RR+  
Sbjct: 64  LITKIR-SWTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRRAAY 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S    G L +N   +TV V G  IH+T  EY+++ +LS      LT    L 
Sbjct: 123 EHPPEQENSTFTNGYLQINYVDQTVLVNGKEIHVTPIEYKLLVVLSKHVGKVLTHNFILK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++    + ++  + VF+  LRKK+         I+T    GY +    +DE
Sbjct: 183 EIWHNALQSDIPSLRVFMATLRKKIEADPAQPKLIQTHVRVGYRMLRYHEDE 234


>gi|163942811|ref|YP_001647695.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865008|gb|ABY46067.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDASSHIVKKGGKNLTLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKRDR-YIQTIHGRGYSMIE 225


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 2   VKILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 62  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    +
Sbjct: 122 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 182 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 236


>gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B]
 gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B]
          Length = 217

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   +EL  K E   V   + GED I   + ++ D ++LD+ L DI G 
Sbjct: 1   MKILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPDIDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R    S  + +L+ +S  ++K+ G +SGADDY+ KPF+ EEL AR++AI RR  
Sbjct: 61  EVAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL +N+  + V  +G  I+L+  E+ ++  L       ++KE  L+ ++ 
Sbjct: 121 ITLNDEIKIKDLIINISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V+I  LRKKLS+     + I+TV G GY +
Sbjct: 181 ISYEGSENTVEVYINYLRKKLSS-----DIIKTVRGIGYTI 216


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DDK +   + L L+ E + V + + G++ +EL +  + + I+LD+ L  + G++
Sbjct: 5   KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+    + DKV GL+ GADDYI KPF  +E+VARI+A++RR+  
Sbjct: 65  VCREIR-KKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G A   +    LS+NL    ++V G ++    KE ++I  L+   N   T++  L+ +
Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV + +LR+KL   +  K  ++TVWG GY
Sbjct: 184 WGFDYYGDSRTVDVHVKRLREKLEGVS-DKWALKTVWGVGY 223


>gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+IEDD +A A+ ++ + +S +   +  D GE+G+       FD +I+D  L    G
Sbjct: 1   MRILVIEDDLEAAAYVVKGLRESGHIVDHAAD-GEEGLTFALSSTFDVMIVDRMLPKRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  LR   + TPV  LS +  ++D+++GL++G DDY++KP+   EL+ARI  +VRR+
Sbjct: 60  LSVVETLREECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRA 119

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L ++L A+ V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 120 NPDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           ++   +P+  +IDV I +LR K+      KN+    + TV G GY LR
Sbjct: 180 WEYHFDPQTNVIDVHISRLRAKID-----KNFEQPLLHTVRGAGYSLR 222


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R ++++D+ +L   + + L+ E ++V +   G   +   + +  D ++LD+ +  + G 
Sbjct: 24  IRAVVVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMPGLDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR   I TP+  L+   S++D++ GL  G DDY++KPF+ EELVAR+RA++RRS 
Sbjct: 84  AVLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSS 143

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               G +  +I  GDL+  LD  T EV   G R+ LT  E++++  L       L++   
Sbjct: 144 ITIAGDSNPVIEVGDLT--LDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQI 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++         +++++I  LRKK+     G   I TV G GY+L+
Sbjct: 202 LDRVWSYDFGGRASVVEIYISYLRKKIDVL--GPPMIHTVRGVGYMLK 247


>gi|326446905|ref|ZP_08221639.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064]
          Length = 220

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A  +E+ L+ E   V V   GE  +E    Y++DA++LD  L  + G 
Sbjct: 1   MRVLVVEDERYMARVLEIGLRREAIAVDVAHDGEAALERLTVYDYDAVVLDRDLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +   ++   V +L+    + DKV GL  GADDY++KPF+  ELVAR+RA+ RRS 
Sbjct: 61  EVCRRIVAMRLECRVLMLTAAGRLGDKVEGLGLGADDYLAKPFDFPELVARLRALYRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL+ +   + V   G  + LT KE  ++ELL       L+ E  L+  +D
Sbjct: 121 MAHAPVLTFADLAFDTHRRRVLRAGREVRLTPKELAVLELLMRADGGVLSAEHLLDKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + + +  LR+KL    G    + T    GY L
Sbjct: 181 AYADPLTNAVRLVVHTLRRKL----GEPRLVHTAISAGYYL 217


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222
                +  I++ +I  LRKK+      +  G K      IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMIR 239


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I+  L++E F V     G  G+     + +D +ILD+ L  + G+
Sbjct: 1   MRVLVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A     + +L+      D+   L +GADDY+SKPF+   LVAR++A+ RR  
Sbjct: 61  RVCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A    V GDL V+  A+T    G  I LT +E+ +++ L+ R    ++K   L  ++D
Sbjct: 121 SRAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   ++V I  LR+K+ +   G++ ++TV G GY L  +
Sbjct: 181 AAADSDPNTVEVHISALRRKI-DTPFGRSALQTVRGAGYRLEPD 223


>gi|229119669|ref|ZP_04248936.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228663784|gb|EEL19358.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++LA  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSLAKKIVSGLTQEGYFILKIHNENQGLNIIYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS  
Sbjct: 63  ICRQIRLVK-TTPIIIVTNNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  +     DL V+  +  V+  G  + LT +EY ++  L   KN  L +EM L+ +
Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLLFLIKNKNKILHREMLLDQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +      ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYKVVVSPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA      L+     V     G  G++      FD ++LDL L    G EV 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G A
Sbjct: 70  RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128

Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +     
Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L+EDD  +A  ++L LK E + +     G   +E  + + +DA+ILDL L  + G E
Sbjct: 9   KIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR   
Sbjct: 69  ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 128

Query: 122 HAQSL-IVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +Q+L +  G +SV+   +D  A+ V   G  I LT +E+ ++   +       +++  L
Sbjct: 129 MSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQALL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++  + E     ++  I +LR K+   A     I TVWGRGY L
Sbjct: 189 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234


>gi|269215547|ref|ZP_06159401.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
 gi|269131034|gb|EEZ62109.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122]
          Length = 230

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+ L++EDD  LA ++  +L   N N YVTD+   G+DG +      +D +ILD+ L   
Sbjct: 1   MQALIVEDDVRLASALARIL---NENGYVTDVVHDGQDGYDYASSGIYDIVILDVMLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR A+I TPV +L+  S I DK+ GL SGADDY++KPF+  EL+A +RA+ R
Sbjct: 58  NGCRVVEELRRARIDTPVLMLTARSEIPDKIEGLDSGADDYMTKPFSPAELLAHLRALTR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        I  GDLS+N+D++ +   G  I L+ KE+++  +L       ++K+  ++ 
Sbjct: 118 RQGQVVFERIEAGDLSLNIDSRDLSCNGKSIALSFKEFELARILFSNPGQIVSKDTLISK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++          ++ ++  LRKK+     G + I+T+   GY
Sbjct: 178 VWGVESTAVDNNVEAYVSFLRKKIRFLGSGVS-IDTIRKAGY 218


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   L+ E +     + G+  I L      D I++DLGL D+ G EV
Sbjct: 9   VLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGLPDMDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R   +  P+ ++S  S   DKV  L  GADDY++KPF+  EL AR+RA +RR    
Sbjct: 69  IRKIRSWSV-VPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRRVQYI 127

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    +S+   GDL ++  A  V+V G  IHL   EY ++ LL+      LT +  L 
Sbjct: 128 MHTDNTNESMFQNGDLMIDYSAGVVKVSGVEIHLMPLEYSLLCLLAQNVGKVLTYQFILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++  + V++  LRKKL      + YI+T  G GY
Sbjct: 188 KVWPNGIGSDISSLRVYMTSLRKKLEKDKANQTYIQTHIGVGY 230


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED++++   +++ L+ E + ++    GE+GIE+ +    D ++LD+ L  I GFE
Sbjct: 4   KVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR    S  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI++I RR   
Sbjct: 64  VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +LI      ++  ++        + LT  EYQ+I++        +T+   L  +
Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+       +YIETVWG GY
Sbjct: 184 WGDDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGY 224


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD+  A  I + L+ E   V     G   I+  +    D I+LD+ +  + G +
Sbjct: 4   RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  ++ ED + GL  GADDY++KP++  EL AR+RA++RRSR 
Sbjct: 64  VCRILRTDS-QVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI  G L ++     V + G  I LTGKE+ ++ LL+       T+   ++ ++
Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
                   + +D  +  LR+KL     G    +ETV+GRGY L +  ++   
Sbjct: 183 GFEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRLADPGREPNA 234


>gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 223

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L+   + V     GE+G  L     +DA++LDLGL ++ G 
Sbjct: 1   MRLLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G  +GADDY++KPF  EE++AR+RA++RR+ 
Sbjct: 61  TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + V+  +  V V G  I LT  EY+++  +   +   +++   + HLYD
Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LR+KL     GK+ IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GKDVIETVRGLGYRL 216


>gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 132/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGETYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++ ALR +    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LSIVAALRASGNKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  + ++ +   DL ++L ++ V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNNFETTLKVADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L   A
Sbjct: 181 WEYNFDPQTNVIDVHVSKLRQKI-DIGFERSLLRTIRNAGYMLTAAA 226


>gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 235

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL ED++ L  +I+L L+ E + V   + G+  ++  K   F+ +ILD+ + +I GF 
Sbjct: 6   RILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGFV 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V   +R+     P+  L+  ++ EDKV GL+ GADDY++KPFN EEL+ R+  +V+RS +
Sbjct: 66  VAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKRSLK 125

Query: 121 GHAQSLIVT---GDLSVNLDA-KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A     +   GD +++ ++ + V   G    LT KE  +++LL  R+N  +++E  L 
Sbjct: 126 GDALKEFNSYKIGDKTIHFNSFELVNADGSITPLTKKETMLLKLLIERRNDAVSREQILE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++    P  + ID FI   RK          Y  ++ G GY   +N
Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDPKSPVYFHSIRGVGYKFTDN 233


>gi|311279965|ref|YP_003942196.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749160|gb|ADO48912.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQELGHQV---DAAEDAKEADYYLGEHVPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+     +DKV  L +GADDY++KPF+ EE+ ARI+A++R
Sbjct: 58  DGLSMIRRWRSHDVSLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVAARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVITIPPFQVDLSRRELSIHDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYAQDVITTVRGQGYLF 220


>gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/232 (37%), Positives = 128/232 (55%), Gaps = 18/232 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  LA  +   L+ E F +  T  GE G+   +  E+  IILD+ L D  GF 
Sbjct: 3   KVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSGFN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR    + PV +L+G     D+V GL+ GADDY+SKPF   EL+AR+RA++RR   
Sbjct: 63  VLSRLR-GDSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVGP 121

Query: 119 SRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            RG          Q  I  G++ +N  A+ V +    +HLT  E+ +IE L+L     + 
Sbjct: 122 ERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIVQ 181

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  +     GRD + +  +++V +  LR+KL    GG   I+T+ GRGY+L
Sbjct: 182 REDLMEKAL-GRDTDFDDYVLNVHMSNLRRKL----GGHASIKTIRGRGYLL 228


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   + + L+  ++ V     G++ +        D I+LD+GL ++ GF
Sbjct: 1   MKILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  +   P+  L+      D + GL+ GADDY++KPF+  ELVARI+AI +RSR
Sbjct: 61  EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G L+++  A    + G  I LT +E  +++LL+       +K   ++H++ 
Sbjct: 120 ANGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +   + +D  +  LR K S  AG    IETV G G  LR++ +
Sbjct: 180 AGSQVSDRTLDSHLRNLRGKFSE-AGNPELIETVHGAGIRLRDSGQ 224


>gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD      I+  L  + + V V   G+D +      ++  IILD  L  + G 
Sbjct: 1   MRILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A+ + PV ILS + S++++V+GL+ G DDY+ KPF   EL+AR+  ++RR  
Sbjct: 61  TVLNTLRSAQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A    +L+   DL ++L  + V   G  I L  KE+Q++  L       +T+ +    
Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  +IDV + +LRKK+         +ET+ G GY L E A
Sbjct: 181 VWDYDFDPQTNVIDVHVARLRKKVET-DDLPPILETIRGVGYRLVEKA 227


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L S+ F +     GE G++L +  ++  I+LD+ L  I GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H  SL       ++   +++NL A+   +  + + LTG EY+++ LL    +  ++KE 
Sbjct: 120 -HINSLNINTTNKLLVNGVTINLAAREASIDENTLTLTGTEYEILALLCKNASQVVSKEQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R     + ID+ +  +RKK++     +  I+T+ G GYV 
Sbjct: 179 ISEEVLGRRLASFDRSIDMHVSNIRKKIAEHIKTER-IKTMRGSGYVF 225


>gi|145594043|ref|YP_001158340.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303380|gb|ABP53962.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 222

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  +PG 
Sbjct: 1   MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVPGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   +T       + LT KE+ ++  L       ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   I+ V +  LR+KL    G    IETV G GY + E A
Sbjct: 181 ANTDPFTTIVRVTVRTLRRKL----GDPPLIETVVGAGYRVAEAA 221


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A+       + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 122 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 229


>gi|332139716|ref|YP_004425454.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549738|gb|AEA96456.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      I+  L    F V +   G DG       +++ I+LD+ L DI G+
Sbjct: 1   MKILVVEDEVKTGDYIKQGLIESGFVVELVRTGLDGHHKSMIGDYELIVLDVMLPDIEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR +   TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILSSLRESGKFTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL +++ ++  +  G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 SVPNNTLHIADLELDIPSRVAKRGGKVINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +IDV I +LR K+ +    K  I+TV G GY +  +  +E
Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFPVK-LIQTVRGMGYKMSVDDSNE 227


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F  +    G++  +L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  ++   + I+TVWG GY    N  DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240


>gi|312890843|ref|ZP_07750372.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311296626|gb|EFQ73766.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  LA  I   L     N    D G  G+E     ++D ++LDL L  + GF
Sbjct: 1   MKILLVEDEAKLAGFIADALNQAGHNCDHLDDGTKGMEAAMVNDYDLLLLDLMLPSMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ALR     TPV ILS ++  E+ ++GL  GA DY+ KPF+ EEL+AR+RA++RRS 
Sbjct: 61  EVIKALRSFNNETPVIILSALNDTENVIKGLDLGAIDYLKKPFDLEELLARVRAVLRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL V+L ++ V      I L+ +E+ ++E L    N  +TK   L  ++D
Sbjct: 121 AQGSLKLQVEDLKVDLLSREVSRNNVNIILSNREFALLEYLLSNPNKVVTKSQILEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   +++V + +LRKK+      +  I TV GRGYVL+
Sbjct: 181 INFDPGSNVVEVHLYQLRKKMDRGFAVE-LIHTVIGRGYVLK 221


>gi|311106814|ref|YP_003979667.1| transcriptional regulator QseB 3 [Achromobacter xylosoxidans A8]
 gi|310761503|gb|ADP16952.1| transcriptional regulatory protein QseB 3 [Achromobacter
           xylosoxidans A8]
          Length = 220

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 120/220 (54%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L  ++   L     +V +V D+ +  + L + + F A++LDLGL D  G
Sbjct: 1   MRVLLVEDDAMLGDAVHTSLAQSGADVQWVRDVAQARLALVE-HGFHAVLLDLGLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ LR    +TPV IL+    + ++++GL +GADDYI KPF  +EL+AR+RA+VRRS
Sbjct: 60  LAVLKHLRARYDATPVLILTARDRLSERIQGLDAGADDYIVKPFQLDELLARLRAVVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   D+ +    + V   G  + L+  EY+ +  L  R   T+++E     +Y
Sbjct: 120 SNAVVSALRCRDVVLEPAKRAVTRDGVEVSLSAHEYRTLLALMERIGHTVSREQLEAAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V+I +LR+KL     G   I TV G GY
Sbjct: 180 GDSGAIESNTVAVYIHQLRRKL-----GDKLILTVHGLGY 214


>gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 217

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD A+A+ I+L L + N+   V   GE+ + + +   FD I+LD+ L  + GF
Sbjct: 2   IKILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVMLPKVDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +    ++  +  PV  L+  SS+ DKV GL++G DDY++KPF   EL+ARI  ++R   
Sbjct: 62  TLFE--KIKPLGIPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++I   D  V L+   V+  G  I LT KE++++  L   KN  LT+E  +  ++ 
Sbjct: 120 KKS-NIINFKDTEVYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I KLRKKL    G K+ I+TV+  GY L E
Sbjct: 179 YDYVGETRTIDNHIQKLRKKL----GWKDEIKTVFKLGYRLEE 217


>gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
 gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
          Length = 230

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA+SIE  L  E FN+   D  +   +  K   FD IILD+ L D  G++ 
Sbjct: 4   ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVMLPDGNGYDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A    PV  L+      + V GL  GADDYI+KPF  +EL++RIRAI+RRS+  
Sbjct: 64  CKEIRKAS-EVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKTF 122

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++   L+++GD+ V      +E     I LT  EY+++ +        L++ + L  L+D
Sbjct: 123 SKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELWD 182

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E  +   + V+I +LR+K+ + AG   YI T  G GY
Sbjct: 183 AEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGY 222


>gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK   + +   L+ E   V +   G+D +       +D +I+D  L  + G 
Sbjct: 2   MKILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRMLPGLDGV 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R  K  TPV  L+ +  ++D++ GL +G DDY+ KPF   EL AR+ A+ RR R
Sbjct: 62  SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    +++  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRE 223
           D   +P+  +++  I +LR K+      K Y    I+TV G GY + E
Sbjct: 182 DISFDPQTNVVETHISRLRAKVD-----KPYEVELIKTVRGAGYRIEE 224


>gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system
           with AgrS [Cupriavidus metallidurans CH34]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      +   L   +F V +   G DG+      ++D +ILD+ L  + G+
Sbjct: 1   MKILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV  L+    +ED+V+GL+ G DDY++KPF   EL+AR R ++RR  
Sbjct: 61  EVLKELREHK-DTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++L    V   G RI L+ +E+ ++  L+ R    L++    +H++D
Sbjct: 120 TREAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I +V G GYVL
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKMDDTYAPK-LIHSVRGIGYVL 219


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   I++ L  E + V     G++ IE  + +E D I+LD+ L  + G++
Sbjct: 4   KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVNGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + L    +  P+ +L+  + I DKV GL+ GADDY++KPF+  EL+ARI+A +RR+  
Sbjct: 64  VCKTL-TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  G LS+  D +TV + G  +HLT KE+ ++ LL+        ++  L 
Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +D+ + ++R+K+        +I+TV+G GY +R+
Sbjct: 183 KIWGYDYYGDTRTVDMHVQRIRRKIDTQPN--KFIQTVFGIGYKMRK 227


>gi|170721590|ref|YP_001749278.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169759593|gb|ACA72909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD      I   L S    V   D G +G+       +D I LD  L ++ G  
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVDWADNGREGLAKAIGGGYDLITLDRMLPEVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++  LR  KI+TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR S 
Sbjct: 63  IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L +         ++L   EY+++E L       +T+ M    ++ 
Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDQTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   +IDV I +LRKK+ ++ G    I TV G GY + E
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 132/236 (55%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G 
Sbjct: 6   VKILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ 
Sbjct: 66  EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125

Query: 121 GHA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    +
Sbjct: 126 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + EN K
Sbjct: 186 RDQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKM-ENVK 240


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F+V   + G + +E+ K ++ DA ILD+ +  + G+E
Sbjct: 10  RILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGSS 129

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +V  DL++N D   V   G  + L+  E+ ++  L L     ++K   L+H
Sbjct: 130 VEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILDH 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+
Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKIDTH--DPQLIQTVRGVGYVLRK 233


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 53  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 113 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 171

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 172 SITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 231

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY
Sbjct: 232 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGY 274


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  + GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+   
Sbjct: 66  CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A     ++  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 ASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +V+ +DV + +LR+K+ +     N+I T  G GY    N
Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|258591200|emb|CBE67497.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 253

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED++ +   +   L S+ + ++    GE+G+        D +ILDLGL DI G EV
Sbjct: 29  VVLIEDERPIRRFLRATLVSQGYRLFEAATGEEGLAEAAARPPDVVILDLGLPDIDGLEV 88

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +R LR    + P+ +LS      DK+  L +GADDY+SKPF   EL+AR+R ++R +   
Sbjct: 89  IRRLR-EWTAVPIIVLSARGQERDKIAALDAGADDYVSKPFGVGELLARMRVVLRHAARN 147

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +       GDL V+L  + V V G  +HLT  EY+++  L       +T++  L  +
Sbjct: 148 LTENTDPTFAVGDLHVDLAVRRVVVGGREVHLTPIEYRLLTTLIHYAGKVVTQQQLLKEV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +   +   + V++ +LR+KL        Y+ T  G GY L
Sbjct: 208 WGPQCTEQAHYLRVYVAQLRRKLETDPARPCYLLTEPGVGYRL 250


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           RIL++ED+K   H +ELM   L+ E F V   + G+  +E+      D ++LD+ L  + 
Sbjct: 3   RILVVEDEK---HIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLD 59

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  V R LR  + +   PV ILS      D+V GL+ GADDYI+KPF+  ELVAR++A +
Sbjct: 60  GLTVCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARL 119

Query: 117 RR--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR      A+     GDL V+ +   VE  G R  LT  E++++ +L+       ++E+ 
Sbjct: 120 RRHVPVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      + + +DV I  +R+KL    G   YIETV G GY  RE
Sbjct: 180 LQKVWGYDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRFRE 228


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6]
 gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6]
 gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 231

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 126/232 (54%), Gaps = 6/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K     +   L    + V +   G DG+       +D I+LD+ L  + G+
Sbjct: 1   MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR  ++ TPV +L+    +ED+V+GL+ GADDYI KPF   EL+ARIR +++R +
Sbjct: 61  QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS   +   +L ++L  + V      I LT KE+ ++EL   +    +++    + +
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +D   + +  +IDV + +LR K+      K  I T  G GYVL E    E C
Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKVDKPFEPK-LIHTERGMGYVLEER---EPC 228


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  ++  L++  F       G  G+   + +  D ++LDL L D+ G E
Sbjct: 3   RILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VLR L+         V I+S      D+V+GL+ GADDY+ KPF+  EL+ R++A++RR+
Sbjct: 63  VLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRA 122

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++ +GD+S++     V V+G  + LT  E++++  L  R +   T+E+ L+ 
Sbjct: 123 DAEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSD 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  + E   + +D  I +LR+KL  A    + IETV G GY L
Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKL 223


>gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 13/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K+++  ++  L+ E + VY T+ G DGIE+ +    D +ILDL L DI G EV
Sbjct: 4   ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEEV 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            + LR  KIS   + +L+  S++ DK+ GL  GAD+Y++KP +  EL AR+ A+ RR   
Sbjct: 64  CKILR--KISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             +++I   D  L +++D + V++ G  I+LT  E+ ++ +L+  +    T+E  +    
Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +DG D    + IDV I  LRKK+        YI TV   GY
Sbjct: 182 GMEFDGSD----RSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGY 221


>gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 225

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 116/200 (58%), Gaps = 8/200 (4%)

Query: 28  YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           YV D    GE      K   F+ IILDLGL  + G  +L+ +R    STPV IL+   SI
Sbjct: 25  YVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNSTPVIILTARESI 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           ED+V+GL SGADDY  KPF+  EL ARIRA+VRRS+G A S++   +++++  A +V V 
Sbjct: 85  EDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNITLDPAAHSVFVD 144

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
              +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V I  LRKKL+  
Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202

Query: 205 AGGKNYIETVWGRGYVLREN 224
               N+I T+ G GY+  +N
Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219


>gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator
           [Geobacter metallireducens GS-15]
 gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter metallireducens GS-15]
          Length = 223

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K  A  ++       F+      GEDG+ L +   +D +ILD+ L    G+
Sbjct: 1   MRILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  LS   +++D+VRGL+ GADDY+ KPF   EL+AR R I+RR  
Sbjct: 61  SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+ ++ LL  RK   L++ +  + ++ 
Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I+DV I +LR+K+ +    +  I TV G GYVL
Sbjct: 181 INFDSDTNIVDVAIRRLRRKVDDPF-ERKLISTVRGAGYVL 220


>gi|329903638|ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548260|gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 221

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  +I+  LK  ++       G+  +       +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDIMIGEAIQGALKDASYAADWVKNGQTALTTLACQRYDLVLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ++R      P+ I++    ++D+VRGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EVLTSIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  ++  G +S++   +   V  G  + L+ +E+ ++  L  R    L++    + LY
Sbjct: 121 GSAAPVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRRELEDRLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +E E   ++  I  LR+KL     G + I+ V G G+++ +N
Sbjct: 181 GWGEEVESNAVEFLIHALRRKL-----GSDVIKNVRGVGWMVSKN 220


>gi|115372285|ref|ZP_01459595.1| two-component response regulator, probably involved in phosphate
           sensing [Stigmatella aurantiaca DW4/3-1]
 gi|115370750|gb|EAU69675.1| two-component response regulator, probably involved in phosphate
           sensing [Stigmatella aurantiaca DW4/3-1]
          Length = 337

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/214 (36%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  L   I   L    F       G   +   +   +  IILDL L    G +
Sbjct: 117 RILLIEDDPQLGAQIADFLGRAGFEPVWWKEGR-ALHPGEAEAYGLIILDLMLPGTYGMD 175

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR      PV +LS  +   DKVR L+ GADDY++KPF  EELV R+RA +RR   
Sbjct: 176 ILRGLREGS-EVPVLVLSARNDTSDKVRALRLGADDYMTKPFWPEELVERVRARLRRPVM 234

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  G L V+L A+ V V G  + LT  E+ ++  L+ R    +T++  ++++ D 
Sbjct: 235 QRQEQVELGALRVDLQAREVLVHGKPVELTRVEFNLLAALARRPGAAVTRQWLVDNVLDP 294

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
             E   + +DV + +LR+KL    G   +IETVW
Sbjct: 295 EREGTERTLDVHVSRLRRKL----GPGKHIETVW 324


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 5   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  +  TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 65  VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233


>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 262

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+ ++  +I L L+ E + VY  D G D + L + +         D IILD+ L
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G +V R+LR    +TP+ I+S   S  +KV GL+ GADDYI+KPF+ +ELVAR RA
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 115 IVRRSRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           ++RR +G A + I       DL +      V ++G  + L  KE++++EL         +
Sbjct: 152 MIRR-QGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWS 210

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  + H++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 211 REQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGY 259


>gi|307244376|ref|ZP_07526489.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492277|gb|EFM64317.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 224

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +   IE  L S++F+      GE+G+ L     +D +ILDL L ++ G 
Sbjct: 1   MKILIVEDNKTIQKDIEKEL-SKHFDTETCGDGEEGLYLISQGIYDLVILDLMLPNMGGI 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L   R   I TP+ IL+   +++DKV     GA+DY++KPF  +ELVAR+ AI+R + 
Sbjct: 60  EILNQARKDGIDTPILILTAKEALDDKVEAFTLGANDYLTKPFYMDELVARVYAILRTNG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +  +   DL ++ +  +V +    I L  K+++++E   L K + L KE   + ++
Sbjct: 120 KIKDKKYLEFKDLRIDSEKNSVYINDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++I++V++  LRKKLS     K YI+T    GY+L
Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSKYDYDK-YIKTKRKVGYIL 220


>gi|300694602|ref|YP_003750575.1| two-component transcriptional regulatory protein qseb [Ralstonia
           solanacearum PSI07]
 gi|299076639|emb|CBJ35977.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum PSI07]
          Length = 246

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++                  FD 
Sbjct: 1   MRVLLVEDDDMIGDAVRKGLRQDGFAIDWVRD-GEAAVQAISSPGAAAAASESGASMFDL 59

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +E
Sbjct: 60  MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 119

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L AR+ A++RR  G A  L+  G++ +N   + V   G  + L+G+E+ ++  L  R   
Sbjct: 120 LAARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPVKLSGREFAVLHALLSRPGK 179

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A  
Sbjct: 180 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPT 234

Query: 228 ETCE 231
              E
Sbjct: 235 PPAE 238


>gi|254448321|ref|ZP_05061783.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
 gi|198262188|gb|EDY86471.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
          Length = 226

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 123/218 (56%), Gaps = 2/218 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+      ++  L    F V +   G DG  L     FD ++LD+ L D+ G+ +++
Sbjct: 1   MVEDEIKTGDYLQQGLTESGFLVTLVRNGLDGHHLAMTETFDLLVLDVMLPDVDGWRIVQ 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
           +LR A   TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS     
Sbjct: 61  SLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRSTVPVM 120

Query: 125 S-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           +  I   DL+++L        G +I+L+ KE+ ++ELL  RK   LT+ +  + ++D   
Sbjct: 121 TDQIRVADLTLDLPRHRAMRAGRKINLSHKEFCLLELLVRRKGEVLTRSLIASQVWDMNF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 DSDTNVIDVAIRRLRAKIDDDYEPK-LIHTVRGMGYKL 217


>gi|182420098|ref|ZP_02951332.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237669479|ref|ZP_04529459.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376135|gb|EDT73722.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237654923|gb|EEP52483.1| two component transcriptional regulator, winged helix family
           [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 227

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 134/229 (58%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  ++ +IE   + E F +     G D ++  + Y +D +ILDL L ++ G 
Sbjct: 2   VKILVVEDNIEISKNIEEYFQKE-FEITAVYNGADALDNLQIYNYDVVILDLMLPEVGGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +    ++T V IL+    + DK++    GA+DY++KPF  EEL ARI AI+ +S 
Sbjct: 61  TVLKYISDKCLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARINAIL-KSM 119

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  ++  ++   DL +++  K + ++ + I L  K Y+++E L L K   L KE   +++
Sbjct: 120 GKVKTANILEFKDLKIDMKTKKIFIEDNEIELNEKLYKLLEYLVLNKGVLLFKEQIFDNI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                +   +II+V+I +LRK+L++   GK Y+ T  G GY+L E+A D
Sbjct: 180 CGYNSDAATEIIEVYISRLRKQLNSFGYGK-YLVTKRGMGYILDESADD 227


>gi|307131191|ref|YP_003883207.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
 gi|306528720|gb|ADM98650.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Dickeya dadantii 3937]
          Length = 222

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + L      V      ++     + +  D  I+DLGL    G 
Sbjct: 1   MRILVVEDNVLLRHHLNVQLNEMGHQVDAAADAKEADYFLQEHAPDIAIVDLGLPVEDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  ++  P+ +L+   S ++KV  L++GADDY++KPF+ EE+VAR++A++RR+ 
Sbjct: 61  SLIRRWRAHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V G  + LT  EY +IE L       ++KE  +  LY 
Sbjct: 121 GLASQIISLPPFEVDLSRRELLVHGDPVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL   A   + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QTANSHDVITTVRGQGY 218


>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      +   L+   + V +   G DG+ +    ++D ++LD+ L  + G+
Sbjct: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+ ALR +K   PV  L+    ++D++RGLQ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QVMSALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL ++     V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 TREAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++DV I +LR K+ +A   K  I TV   GY+  E
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKI-DAPFDKKLIHTVRSVGYMFSE 221


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 132/222 (59%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+++L+  +  +L+ E ++V + + G   +E+ + +  D I+LDL L  +PG E
Sbjct: 3   KILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R AK   P+ +L+   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR + 
Sbjct: 63  VCRAIR-AKSMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + +++  G + V++D   V V+G  + L  KE++++E+L       +T+E  ++ 
Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+         + T+ G GY
Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGY 223


>gi|296123001|ref|YP_003630779.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015341|gb|ADG68580.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD A+  S++        +      G  G E     + DAI+LDL L    G+
Sbjct: 1   MNVLVIEDDPAIGRSLQQGFSEAGHHCVWQQNGISGYETALSRQADAIVLDLLLPGESGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A +  P+ +L+ + SI+D+V+GL+ GADDY+ KPF+  EL+AR+ A+ RR+ 
Sbjct: 61  DVLQKLRAAGVQAPIILLTALGSIDDRVKGLKLGADDYLVKPFDFAELMARLEAVQRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++    L+++L  + V        I LT  E+ ++ELL       +T++M   H+
Sbjct: 121 NKPSMILQAAGLTLDLTTRRVTSNDTEKEIDLTPIEFSLLELLMRYAGQVVTRKMLCEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +    +I+V + +LR KL      ++ I+TV GRGY L
Sbjct: 181 WGFNWDGTTNVIEVHVNRLRGKLDKDR-DQSIIKTVRGRGYAL 222


>gi|225874419|ref|YP_002755878.1| transcriptional activator protein copR [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791448|gb|ACO31538.1| transcriptional activator protein copR [Acidobacterium capsulatum
           ATCC 51196]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD A A  +E  L    +N+ +         L        IILDLGL D  G 
Sbjct: 1   MKLLVVEDDVANAQFLERALAENGYNIDLAHNAAAAERLALEGGHAVIILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++  L+   +  PV ILS   +++D+VRGL+ G DDY++KP+   EL+AR+R ++RR  
Sbjct: 61  SLITRLKAGGVKAPVLILSARRAVDDRVRGLEQGGDDYLTKPYALPELLARVRNLLRRNS 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     +++   DL +NL  +     G  + LT +E+ ++E L       +T+ M L  +
Sbjct: 121 SAPDTSTVLRVLDLEMNLLRREATRAGELLQLTTQEFALLEFLCRHAGRVVTRSMILQQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  R +P+  ++DV I +LR K+         I T+ G GYVLR+
Sbjct: 181 WGMRIQPDTNVVDVHIYRLRSKVER-PDLPQLIRTIRGVGYVLRD 224


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 13  KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 73  VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 132 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR
Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 239


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ AL+  +   LK E F V +   GE+ + L +  + D ++LD  L  I G EV
Sbjct: 5   VLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIEV 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +L+      D++RGL +GADDYI KPF  +EL AR+RA++RR R
Sbjct: 65  CRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+  +  GD++++  A  V      IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK LS A G  + I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHIGRLRKALS-AGGEHDPIRTVRSAGYAL 225


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 15/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+ E + V     G +G E+   + +D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR  KI  P+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR   
Sbjct: 63  ICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 119 ------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                       S      LI  GD+ ++     V V+G +I +T KE++++  +  R N
Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L++E  L+ +++     E +I+DV I  LR+K+        YI TV G GY
Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGY 235


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ + + I + L++E F          G+ L +  E D IILD+ +  + G +
Sbjct: 4   RILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K + P+ +LS  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RR + 
Sbjct: 64  AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +     +I  GDL +N   + V V+G  I LT KE+ ++ELL   K T ++       
Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++          + V I K+R+K+ +      YI+T+WG GY
Sbjct: 183 VWQEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGY 224


>gi|194291255|ref|YP_002007162.1| response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|193225090|emb|CAQ71101.1| putative response regulator [Cupriavidus taiwanensis LMG 19424]
          Length = 224

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED+  LA  +   L+   F + +V D G       +  E+DA++LDL L    G
Sbjct: 1   MRILLVEDEVELARWVARALEQGGFVIEHVAD-GLQAEARLQAEEYDAVLLDLRLPGKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+++R     TPV IL+   +++++VRGL  GADDY+ KPF   EL AR+ A++RRS
Sbjct: 60  LAVLKSMRGRDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARLLALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG A   +  G L  + + ++  + G  + LT +E  ++  L  R    LTK   L+ ++
Sbjct: 120 RGRAHPRLQCGTLVFDGETRSFTLGGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +     I+V + +LRKKL   AG    I T+ G GY+L   AK
Sbjct: 180 SLDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLLEPEAK 223


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S+  A SL + G LS++   +   V G  I LT +E+ ++   +       ++   
Sbjct: 126 LAKDSKIEAGSLRIAG-LSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 8/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E + V     GE G+   +   +DA++LDL L  I G E
Sbjct: 4   RILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVARI+A++RR+  
Sbjct: 64  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTDA 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A  L V+G LS++   +   V G  + LT +E+ ++   +       ++   
Sbjct: 124 LERNARLDAGRLEVSG-LSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           LN ++  + E     ++  I +LR K+       + I TVWGRGY     A  E  
Sbjct: 183 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKFAAPASGEPT 238


>gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei]
          Length = 222

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 28  YVTDLGEDG---IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           YV D  +DG       K   F+ IILDLGL  + G   L+ +R    +TPV IL+   ++
Sbjct: 25  YVVDWLKDGDAARAAVKSESFELIILDLGLPKLSGLSFLQTIRHEGNTTPVIILTARETV 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           ED+++GL SGADDY++KPF+  EL AR+RA+VRRS+G A S++   +++++  A +V V 
Sbjct: 85  EDRIKGLDSGADDYMTKPFDLNELSARVRALVRRSQGRADSVLQYRNVTLDPAAHSVYVD 144

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
              I++  +E+ +++ L       L++E  +  +Y   ++ +   ++V I  LRKKL+  
Sbjct: 145 DVMINVPRREFALLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEVHIHNLRKKLN-- 202

Query: 205 AGGKNYIETVWGRGYVLREN 224
               N+I T+ G GY+  +N
Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A     T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|221068535|ref|ZP_03544640.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713558|gb|EED68926.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 223

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+  L   +   L      V     GE    L +   FDA +LDLGL    G 
Sbjct: 1   MRILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R    S PV IL+  ++  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +L   G ++++     V V+G  + LT  E++++ LL  R    +++     H+Y 
Sbjct: 121 PHASALWQCGAITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   I+VF+ +LRKKL   +     IETV G GY L   +  E
Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVAPSNQE 223


>gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+  A  +   LK           GE G+ + +  ++D +I+D  L    G 
Sbjct: 1   MRILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            V+  LR +   TP  ILS +  ++D+V GL++G DDY++KP+   EL+AR   +  RR+
Sbjct: 61  SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++    GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+     G   + TV G GY++R
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEREFDGP-LLHTVRGSGYIMR 222


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 42  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161

Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI T    D+S+N     V V+G  + L+ KE++++EL         ++
Sbjct: 162 LLRRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 221

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 222 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 269


>gi|146311515|ref|YP_001176589.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145318391|gb|ABP60538.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L + + + L  +  +V      ED +        + ++LDLGL D  G 
Sbjct: 1   MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKEDALHQLDACVPELVLLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  SLMAYLRQQMKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I    LS+++  + V V    I LT  EY ++E L LR +  +T+  FL     
Sbjct: 121 GFENEMIEIRGLSLHVPTRRVTVSTRNIELTASEYALLETLLLRTDRVITRR-FLEERIF 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G  Y+ TV G G+V+
Sbjct: 180 GAKENMSNSLDVHMGNLRRKI-----GDGYVRTVRGVGFVI 215


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+   A  +   L    + V V   G       +   FD ++LD+ L  + G+
Sbjct: 1   VRILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R  + STPV  LS   S++D+V+GL+ G DDY+ KPF+  EL+AR+R+++RR  
Sbjct: 61  EVLRVIR-RRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++  GDL + +    V   G  I LT KE+ ++ LL  R+   LT+ M  +H++ 
Sbjct: 120 VQCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVWL 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+      +  I TV G GY L
Sbjct: 180 MNFDCDTNVVDVAIRRLRMKIDEPYPDR-LIHTVRGMGYRL 219


>gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58
           ++L+IEDD  +A    L       N Y  D+ +DGI   K      +D +++DL L    
Sbjct: 3   QVLIIEDDNNIA---ALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLMLPGKD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVR 117
           G+E+++A+R  K   P+ I+S  +   DK+RGL  GADDY++KPF+  ELVARIR+ I+R
Sbjct: 60  GYEIVKAIR-DKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMR 118

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             R   +     +I    + +  D+  V V G  I LT KEY+++  L+   N   TK+ 
Sbjct: 119 YERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + ++      +   + V I KLRKK+   +G   YIET+WG GY
Sbjct: 179 IFSSIWGEDYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGY 224


>gi|24373664|ref|NP_717707.1| DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
 gi|24348011|gb|AAN55151.1|AE015651_10 DNA-binding response regulator YgiX, putative [Shewanella
           oneidensis MR-1]
          Length = 219

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V         +   K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYHQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  DLLKAWRSQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G LS++L+ + V  +   + L+ +E+Q++  L+      LT+   L  L  
Sbjct: 121 GLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQ-LEQLTY 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE     I+V I  LRKKL+N       I+TV G GY L E
Sbjct: 180 GWDEVGSNSIEVHIHHLRKKLAN-----ELIKTVRGIGYTLTE 217


>gi|323357818|ref|YP_004224214.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274189|dbj|BAJ74334.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 223

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ +DD  L  ++ + L +  ++V     G   I L      D ++LDLG+  + G 
Sbjct: 1   MKVLIADDDPQLVRALRITLAAHGYDVVAAADGAAAITLAAGSHPDIVLLDLGMPHLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V++ALR    S P+ ++SG +   DKV  L +GADDY++KPF  +EL+AR+R   RRS 
Sbjct: 61  QVIQALR-GWTSVPIIVVSGRTGSADKVDALDAGADDYVTKPFQIDELLARLRVHARRSA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G + V+L AK V   G R+HLT  E++M+E L+    + +T++  L  ++
Sbjct: 120 PASGEAVVRFGSVEVDLAAKAVLRDGTRVHLTPTEWRMLEFLARNPGSLVTRQTLLKEIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   + +++ +LRKKL        ++ T  G GY L
Sbjct: 180 ASEQVADSGYLRLYMSQLRKKLEADPSNPVHLLTEQGMGYRL 221


>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 233

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++L L+ ENF+V  T  G + + L K  ++D I+LDLGL DI G  
Sbjct: 4   KVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDINGEH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R     TP+ I++   S+ +KV   + G DDYI KPF K EL+ARI+AI+RRS  
Sbjct: 64  ICKKIREMS-ETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNK 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  ++I+T    +NL+    +  G +I LT KE +++  L       L ++  + H
Sbjct: 123 IKSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKH 182

Query: 178 LY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++ D       + +DV I  +R+K+        +I+T+ G GY    N+
Sbjct: 183 VWGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKFDINS 231


>gi|255595850|ref|XP_002536403.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223519809|gb|EEF25981.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 233

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  L  ++   L +  + V     G++G+   +   +D ++LDLGL  + GF
Sbjct: 10  VRILLVEDDVVLGDALVQSLVNATYAVDWFRNGKEGVLAVQSQSYDLVLLDLGLPFLNGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ LR  K + PV +L+   + ED VR    GADDY+ KPF   EL ARIRA +RR  
Sbjct: 70  EFIKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVS 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S +  G+L ++   +   V+G ++ L+ +E+ ++E LS +    +TK+  +  L +
Sbjct: 130 AHFSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I+V++ +LRKKL +       I  V G GY++ + +
Sbjct: 190 WDHDIGPNAIEVYVHRLRKKLGDC---DVTISNVRGLGYMMEQQS 231


>gi|163859305|ref|YP_001633603.1| response regulator protein [Bordetella petrii DSM 12804]
 gi|163263033|emb|CAP45336.1| response regulator protein [Bordetella petrii]
          Length = 225

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDA+ILDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLA--RHAGFVVEWADDGLLAERRLAVEEFDAVILDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ ++V  L  GADD++ KPF  EEL AR+ A++R
Sbjct: 59  DGHTLLSKIRARDDRTPVLVLTARDSLAERVGTLHEGADDFLPKPFVLEELEARLTALIR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  GDL ++  A+   V+G  + L+ +E+ ++ +L  R    + K+  L+ 
Sbjct: 119 RSRGREHPRLALGDLILDTSAQRFTVRGQPLQLSPREHAVLRVLIQRSGEPMNKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +  ++ I+V + +LRKKL++       I T+ G GY L
Sbjct: 179 IQTDDSDVNLEAIEVLVHRLRKKLADTG---VQIVTLRGLGYCL 219


>gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
 gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
          Length = 227

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDRALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDLSSTDDGVITHGDLTLNPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227


>gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 227

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + L+     V   +  ++     K    D  I+DLGL    G 
Sbjct: 1   MRILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGLPGEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  +I+ P+ +L+   S ++KV  L +GADDY++KPF+ EE+ ARI+A++RR+ 
Sbjct: 61  SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++      ++L  K   V    I LT  EY +IE L       ++KE  +  LY 
Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKK+ N    +  I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKILN-QWPEEVIVTVRGQGY 218


>gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
 gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
          Length = 219

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 132/229 (57%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HA--QSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + +    DL++N     V  E   + I L+ +E+++++ L L K   L+++  L  
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    Y G D     I+D++I  LR K+      K +I+TV G G++ +
Sbjct: 183 VWGFDYIGND----NILDLYIKYLRDKIDRPYERK-FIQTVRGIGFIFK 226


>gi|218658798|ref|ZP_03514728.1| two-component transcriptional regulator [Rhizobium etli IE4771]
          Length = 100

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 77/100 (77%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYIS 100
           EVLR LR++K+ TP+ I  G      +VRGL  GADDY++
Sbjct: 61  EVLRTLRLSKVKTPILISVGHGRHRRQVRGLGFGADDYMT 100


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +     +  D I+LDL L  + G E
Sbjct: 5   RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR A+ + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 65  VCRTLR-ARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + + +  G + ++++   V V G ++ L  KE++++E+        LT+   ++ +
Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 184 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGY 224


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  +  TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 64  VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            RILL+ED+K ++  I++ L  E + +     G + +E  +  E+D I+LD+ + ++ G 
Sbjct: 4   FRILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+  S I DKV GL +GA+DY+SKPF  EEL+ARIR   R   
Sbjct: 64  EVCRRIRQFS-HVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKA 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q+  +    ++ +D KT +V   G  I LT  EY ++++L + KN  LT++  +  +
Sbjct: 123 LKNQTDQIKVK-NIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +  ++DVFI  LR K+ N    K  I T+ G GYV+++N
Sbjct: 182 WGYDYSGDTNVVDVFIRYLRSKIDNERQDK-LITTIRGVGYVIKDN 226


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|150016899|ref|YP_001309153.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903364|gb|ABR34197.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK++ FN   TD G + + L   ++ D IILDLGL DI G +V
Sbjct: 7   ILVVEDDRPIRNFIAASLKTQGFNYIETDKGVEAVALTMSHKPDLIILDLGLPDIDGVDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R      P+ I+S   +   K+  L  GADDY++KPF   EL+ARIR  +R SR  
Sbjct: 67  ITRVREWS-KVPIIIVSARENERQKIEALDKGADDYLTKPFGIGELLARIRVSLRHSRAI 125

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A+   V G L+V+   + V +    IHLT  EY+++ LL       LT    +N
Sbjct: 126 TNEKENAEIFKVKG-LTVDFSKRKVTIDNEDIHLTPIEYKIMALLCKYAGKVLTHNFIIN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E + + VF+  LR+K+        YI T  G GY L ++
Sbjct: 185 EIWGAAVGNETQSLRVFMASLRRKIEKNPAEPKYIYTEVGVGYRLADD 232


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      + +++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232


>gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
 gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
          Length = 224

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY++KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L+ + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVHGIQQLGELAFH-DEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LSDEVSPESIELYIHRLRKKLQ---GSDVRIATLRGLGYVL 217


>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 220

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ ++H +EL L  E   V V   G D +   + ++ D +ILD+ L  + G 
Sbjct: 1   MKILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLPGLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR       + +L+ +  ++DKV   + GADDY+ KPF+ EEL+ARI+A+ RR +
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    + + +D   V + G  + L+  E+ ++ LL   +N  L+KE  L+ ++ 
Sbjct: 120 EKKEEIISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+    +++V+I  LRKKL        YI+T+ G GY  R++
Sbjct: 180 DYDDERENLVEVYINYLRKKLGERG---KYIKTIRGVGYSFRKD 220


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V   + GE+G EL    + D I+LDL L  + G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VARI+AI+RR++ 
Sbjct: 64  VCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQT 123

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             QS +           G+L V  +     +    + LT KE++++  L+  K   LT++
Sbjct: 124 LIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEE 234


>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           EO147]
 gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           C6786]
          Length = 227

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  ++D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 131/235 (55%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +    +  L  E + V V   GE+ ++  K  + D IILDL L  + G E
Sbjct: 4   KILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++ S         I  GDL ++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR + ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + ++I   +L +++    VE     I LT +E++++  L L K    ++EM L  +
Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +++ +DV I +LR+K+ +       I T  G GY
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223


>gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 131/234 (55%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAII--LDLGLTDIP 58
           M++LL+ED+K++   + + LK E + V     GE+ ++L    + D +I  LD+ L  I 
Sbjct: 1   MKVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLAD-QQTDIVIAILDVMLPGID 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFEV   LR       + +L+  S   DKV GL+ GADDY+SKPF+  EL+AR++A+ RR
Sbjct: 60  GFEVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRR 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ I      + LD + +      I LT KE+ +I+LL+   N  ++++  
Sbjct: 120 LTPIPEAEDKNEINIAPFRLLLDERKLIRTEQEIDLTPKEFAIIKLLAENANKAISRDEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      ++KI+DV I ++R+K+ +      ++ETVWG GY+ R++  DE
Sbjct: 180 LTAVWGQFFVGDLKIVDVNIRRIRQKIEDDPAHPAFLETVWGYGYLWRKDVPDE 233


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 5   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 65  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 124

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 125 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 185 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 230


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ LA  +   L  +++ V + + G+ G E  +   +D I+ D+ L  + G 
Sbjct: 1   MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    STP+ +++      D++RGL +GADDY+ KP N  EL AR+RA++RR  
Sbjct: 61  TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++     V      + LT KEY ++E+L        ++   + HL+ 
Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P+ + +   I  LR KL    G  ++IE V+G GY L+
Sbjct: 181 FDDPPQEETVKSHIKGLRHKL-KVVGAVDWIENVYGLGYRLK 221



 Score = 49.7 bits (117), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 14/128 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF------DAIILDLGL 54
           + +L+++DD  +  ++  ML  E + + +T L +      +F+E       D +ILD+ +
Sbjct: 500 VNVLVVDDDPLILAALGPML--EPWGMRITGLDDP----LRFWEVLQSTAPDLLILDVEM 553

Query: 55  TDIPGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
             I G E+ +A+R        P+  L+    +E   +   +G DDY+ KP    EL+ARI
Sbjct: 554 PHISGIELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARI 613

Query: 113 RAIVRRSR 120
              + RSR
Sbjct: 614 THRLERSR 621


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 45  RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 225 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 262


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +      + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIR-AESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +   I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 224


>gi|295105315|emb|CBL02859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 236

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   LK+  +       GE  I +   +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R++R    + P+ +LS  S   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G    + V G L ++  A  V +  + +HLT  EY+++ +L+      LT       
Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++    E ++  + V++  LRKKL       + I+T  G GY +     DE
Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERCPDAPHLIQTHVGVGYRMLRAENDE 235


>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
 gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+K +   I+L L    ++      G + +E+ +   FD I+LD+ L  I GF
Sbjct: 2   IKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R  +I  PV  ++    + D+V+GL+ GADDY+ KPF+  ELVAR+ A++RR  
Sbjct: 62  DIMEYIRPMEI--PVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLRRY- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  GD+ V+++A+TV+  G  + LT KE+ ++ L    +N  L +E     +++
Sbjct: 119 NKTERRLSAGDVVVDVEARTVKKAGRPVELTNKEFLLLVLFLRNRNVALFRETLYEKVWE 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    + + +D+ + +LRKKL+   G    +  V+  GY L
Sbjct: 179 GEYSGDSRTLDLHVQRLRKKLNWENGEYPRLVAVYKVGYRL 219


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 13  KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 73  VAREVR-KTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A+       + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 132 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR
Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLR 239


>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 226

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  LA ++  +LK+ ++ V V   G+ G+   +   +D  +LD+ L    GF
Sbjct: 1   MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR    + P+ +L+    I DKV GL +GADDY++KPF   EL+ARIR++ RR+ 
Sbjct: 61  SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D++++LDA  +E +G RI L+ KE+ ++ +L  + +   +K+  ++ ++ 
Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    ++ ++  LRKKL+   G    I T+ G+GY L   A
Sbjct: 181 YDSTAADNNVEAYVSFLRKKLA-FIGATTCIVTLRGQGYRLGTQA 224


>gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
 gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
          Length = 236

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   L+S+N+       G   +        D I++DLGL D+ G +V
Sbjct: 9   ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGLPDMDGVDV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R   ++ P+ ++S  S   DKV  L +GADDY++KPF+ EEL+AR+R+ +RR +  
Sbjct: 69  IKKIRTWSVA-PIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRRVQYL 127

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q      S+   G+L+++  A TV +  H IHL   EY ++ LL+      LT +  L+
Sbjct: 128 MQKDEGNASIFHNGELTIDYGAGTVSIGDHEIHLMPLEYSLLCLLAKNVGKVLTYQFILD 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +   + V++  LRKK+        YI+T  G GY
Sbjct: 188 KVWVNAIESDRSSLRVYMASLRKKIEKDKNHPQYIQTHIGVGY 230


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA      L+     V     G  G++      FD ++LDL L    G EV 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G A
Sbjct: 70  RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128

Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +     
Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  + L L+ E +   V   G  G+EL + +  D ++LD+ L  + G+ 
Sbjct: 4   KVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMDGWS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R +   TPV +L+     EDKV GL+ GADDYI KPF  +E++ARI A++RR   
Sbjct: 64  VLKKIRESD-KTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGA 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  +    L +NLD+  + V G R+    KE +++  L+   N   T+   L+ 
Sbjct: 123 EEEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +DV I +LR+KL   +  +  ++TVWG GY
Sbjct: 183 VWGFDYFGDSRTVDVHIKRLREKLEGVS-EQWSLKTVWGVGY 223


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R +++ED+ ALA  +   L+ + F V VT  G D + L +  + D ++LDLGL  + G E
Sbjct: 7   RAMVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLPGLDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  +   D + GL  GADDYI+KPF+  EL ARI+A +RR R 
Sbjct: 67  VCRRLRTFSDAY-VVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRT 125

Query: 121 ---GHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              G    +      V GDLS+++  + V V G  +HLT  E+ ++  LS    T  ++ 
Sbjct: 126 GFTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRA 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ ++      +  ++DV I  +R+KL + A    Y+ TV G GY
Sbjct: 186 RLIDTVWGPEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGY 232


>gi|238063518|ref|ZP_04608227.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237885329|gb|EEP74157.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 222

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERNLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   + V   G  + LT KE+ ++  L   +   ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRVVTRGGTAVDLTNKEFGVLAELLKARGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +P   I+ V +  LR+KL    G    IETV G GY   E A 
Sbjct: 181 ANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGYRTAEGAS 222


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 115/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|167589275|ref|ZP_02381663.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 234

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 131/231 (56%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDELKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    +++  I +LR KL      K  + T+ G GYVL E    E  +
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEEREAREDAD 229


>gi|224437571|ref|ZP_03658529.1| hypothetical protein HcinC1_06380 [Helicobacter cinaedi CCUG 18818]
          Length = 226

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 16/225 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDI 57
           MRIL+IEDD AL  SIE ML   N + Y TD+ E   DG        +D ++ D  L D 
Sbjct: 1   MRILVIEDDSALCKSIEDML---NGHSYQTDIAENLKDGEYFISIRNYDLVLSDWDLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +++  ++     TPV I+S  SS+E+++   + GADD++SKPFN E L+ RI+A   
Sbjct: 58  CGVDIISQVKEKSPRTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQA--- 114

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R    S+I   DL +N D + +  +G  I + GK ++++  L+  ++  ++KE  L+ 
Sbjct: 115 RLRFWGSSVIEIEDLVINPDEEKITYKGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDA 174

Query: 178 LYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +EPE+    +I+V I ++R+K+         IETV  RGY
Sbjct: 175 IW---EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 215


>gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +A  + L L+   F V   D G + +   +      IILDL L DIPG EV
Sbjct: 7   ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGEEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
             A+R A+ + P+ +L+     ED++RGLQ GADDY++KPFN  E+VAR++AI+RR+   
Sbjct: 67  CMAVR-ARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTMLD 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A  L    GDL ++  ++ V   G    LT  EY+++ +LS       ++E  +  +
Sbjct: 126 HPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIERV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V+ ID  +  LR K+ +      YI+TV+G GY
Sbjct: 186 FGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGY 226


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A +IE+ LKSE + ++    G + +E+    +   I++D+ +  + G +
Sbjct: 5   KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    + P+ ILS  S   DKV GL  GADDYI+KPFN  E++AR+++ +RR   
Sbjct: 65  AIMHIRETS-NIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     ++I  G LS++L+AKTV ++G  + +T  EY+++EL     N   + +    
Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I ++R+K+        YI+ VWG GY + +N
Sbjct: 184 RVWNETSFQSENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231


>gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     GD S    A T+EV G R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228


>gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM]
 gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK     +   L+ E   V + + G + +      E+D +I+D  L  + G 
Sbjct: 2   MKILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRMLPGLDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR AK  TPV  L+ +  ++D++ GL +G DDY+ KPF   EL AR+ A+ RR R
Sbjct: 62  ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P+  +++  I +LR K+         IETV G GY
Sbjct: 182 DISFDPQTNVVETHISRLRAKVDKPF-ETELIETVRGSGY 220


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ I  LRKKL + A    YI TV G G+
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGF 220


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  IE+ LK E + V     GE  IE+ +    D ++LD+ +  + G+EV
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLAL 124

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-----K 171
            Q      S++  G + ++ + +TV V G RI LT KE+ ++ LL+       +     +
Sbjct: 125 NQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIFQ 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ N  YD  +      + V I  LRKKL         I+T+WG GY  
Sbjct: 185 QIWTNDYYDDNNN----TVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL    ++  I+LDL L ++ G E+
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMDGIEM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  SSKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTS 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY    N  DE+ 
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVNTNDESS 240


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 229


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L++  F V     G+  ++L +  + D +ILD+ L  I G E
Sbjct: 5   KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDGLE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R  R  + +   PV +L+  +   DKV GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  VCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRRA 124

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +S  +I  G ++++++   V V+G R   T KE++++ LL+       ++E  L +
Sbjct: 125 DKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +DV I  LR+K+   +    +IETV G GY   E
Sbjct: 185 IWGYDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNE 230


>gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074627|gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 239

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED   +A +I   L      V + ++       L + Y  D +ILD+ L    G
Sbjct: 1   MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLSESY--DLLILDVMLPQQDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F +L+ LR     TPV +L+  + +E++VR L  GADDY+ KPF+  EL ARIR ++RRS
Sbjct: 59  FSLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRS 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G + +L+   +LS++  +++  + G  I LT +E  ++E+++ R      K+  ++ L+
Sbjct: 119 GGESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLF 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              D P    ++ ++ +LRKKL+ AA     I T+ G GY L  +A  E
Sbjct: 179 TVDDNPSANSVEQYVARLRKKLAAAA---FEIRTLRGLGYQLVLHAPAE 224


>gi|154245747|ref|YP_001416705.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159832|gb|ABS67048.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD  +   +   L +E F+V V    ++ +E  + Y   A++LD+ L D  G 
Sbjct: 1   MNILVVEDDSDIGAMLSRGLSAEGFDVTVVGRADEALEAARQYNPCAVVLDIMLPDGSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRS 119
           EV RALR A  S P+  LS    + D+  GL +GADDYI KPF   ELVAR+RA ++ R 
Sbjct: 61  EVCRALREAGHSGPILFLSAKDEVRDRAEGLGAGADDYIVKPFEFAELVARLRAHLLHRL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    IV G L ++   +TV        LT +E +++ LL    N  + +    + L+
Sbjct: 121 GDNHAGRIVAGRLVLDQSTRTVLFGEIHARLTEREAELLALLMATPNRPVPRGEIFDRLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
             +    + ++DV++  LR KL+  +  G   + TV GRG++L
Sbjct: 181 ANQGGASLNVVDVYVGYLRTKLAPVSRAGGPQVSTVRGRGFML 223


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|297560476|ref|YP_003679450.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844924|gb|ADH66944.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD  +  ++ + L++  +++ V   G D +        D  ++DLG+  + G 
Sbjct: 1   MRILVADDDPQILRALRVTLRARGYDIVVATNGADALNAAVDQRPDLYVIDLGMPHLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    S P+ ++SG +   DKV+ L +GADDY++KPF  +E +AR+RA+ RR  
Sbjct: 61  EVIEGLR-GWTSAPILVVSGRTDSVDKVQALDAGADDYVTKPFAIDEFLARVRALTRRGA 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+ L+  G+L+V+L A+TV  +G      + LT  E++++E+L       +T++  L
Sbjct: 120 CGDAEPLVRLGELTVDLSARTVTREGGSGAEGVRLTPTEWRILEILMRHAGKLVTRQRLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + +++ +LRKKL        ++ T  G GY
Sbjct: 180 ADVWGSEHVTDTGYLRLYVSQLRKKLEPDPKAPRFLITEPGMGY 223


>gi|167464606|ref|ZP_02329695.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 236

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGL-TDIP 58
           M++L++ED++A+   + + LK +   V   + GE+ I L  K  +    ILD+ L T++ 
Sbjct: 1   MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V   LRV      + +L+  S   DKV GL+ GADDYISKPF+  ELVARI A+ RR
Sbjct: 61  GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 120

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  A++    ++  G   ++LD + +   G  I LT  E+ ++ +     N +++++  
Sbjct: 121 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++      + KI+DV I ++R+K+        YIETVWG GY+ + +
Sbjct: 181 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 230


>gi|193071717|ref|ZP_03052617.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
 gi|192954979|gb|EDV85482.1| DNA-binding response regulator PhoP [Escherichia coli E110019]
          Length = 223

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLLDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
 gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
          Length = 223

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD   A  I   LK++   V   D G+DG       ++D ++ D  L  + G 
Sbjct: 1   MRVLVVEDDLETADYIASSLKAQGHAVDHCDNGKDGFLNALDNDYDVMVFDRMLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R A I TP+  LS M  I D+V GL +G+DDY+ KPF+  EL AR+ A+VRR  
Sbjct: 61  TLIKSVRGAGIETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPP 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++   DL +NL  +TV   G  + L  +E+ ++E L    +  +T+ M L  ++
Sbjct: 121 LKTEETVLRVADLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+      +  I T+ G GY L
Sbjct: 181 DFHFDPKTNVVETHISRLRNKVDKPFATE-LIHTIRGAGYSL 221


>gi|254504173|ref|ZP_05116324.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222440244|gb|EEE46923.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 220

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 121/219 (55%), Gaps = 4/219 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+ED   +A +I + L        +    E+   L     +D I+LDL L D  G ++L
Sbjct: 1   MLVEDTFDMAEAIMIRLDRSGIACDLAKTLEEARSLLDVQRYDVIVLDLNLPDGLGTDLL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR+    TPV +L+   S++D+V  L SGADDY+ KPF+  EL ARI+A+ RR +G  
Sbjct: 61  KELRLKSDRTPVLVLTAEFSVDDRVSTLNSGADDYLVKPFDHRELEARIQALYRREQGDK 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +  GDL+ N  A+ V ++   ++LT +E+ ++EL    +   L+KE     ++  +D
Sbjct: 121 AEELAIGDLTFNATARVVRLKETPVNLTRREFSLLELFIRNRGKVLSKERLFEGIFSFQD 180

Query: 184 -EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +  +++++ +LRKKLS   G    IET  G GY L
Sbjct: 181 TDVSMNALELYVARLRKKLS---GSSVVIETQRGLGYKL 216


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +  TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 64  VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+I+D+  + + + + L  E F+V     G +G++  +    D ++LD+ + D+ G+
Sbjct: 4   LRVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGW 63

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + +R +A +  P+ +L+    ++DKV GL  GADDY+ KP + EEL+ARI A++RRS
Sbjct: 64  QVCKKMREIAPV--PILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRS 121

Query: 120 RGHAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              A +++        DL++  + + V V    I LT KEY +++LL+     T  ++  
Sbjct: 122 SHQAHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  L+      E ++ID  I  +R+KL       N I+TVWG GY
Sbjct: 182 VERLWGNDFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGY 226


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           ++L++ED+  +   + + LK   +     + GE+ + +L +  +    +LD+ L D+ GF
Sbjct: 3   KVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R +     + +L+  +   DKV GL +GADDY++KPF+  EL ARI A+ RR+ 
Sbjct: 63  EVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTG 122

Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G  +    +G++S     +N   +T+E  G R+ LT  EY +++L   +    L++E  L
Sbjct: 123 GAEKE--SSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEIL 180

Query: 176 NHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ GRD   E+KI+DV I +LR K+ +      YI TVWG GY
Sbjct: 181 DTVW-GRDYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGY 224


>gi|90419331|ref|ZP_01227241.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
 gi|90336268|gb|EAS50009.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1]
          Length = 221

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L + +++ L    F   +TD   D         FDA++LD+ L D  G 
Sbjct: 1   MRILIVEDDEILGNGLKVGLGMSGFTSDLTDCCRDAEAALAVGGFDAVVLDVMLPDGSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV +L+ + ++ D++RGL  GADD++ KPF  +E+ AR+RA++RR  
Sbjct: 61  DILAAMRQRGDTTPVLLLTALDALPDRIRGLDGGADDHLGKPFALDEVAARLRALIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  +    + V+  A      G  I L+ +E+ ++  L       L++    + LY 
Sbjct: 121 TRAEPFLEWEGVRVDPAAMVATQDGVDIRLSRREFAVLHALIQHPGAILSRSQLEDKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +  E   ++V + KLR K      G  +IET+ G GY LR
Sbjct: 181 FDEGVESNAVEVHVHKLRAKF-----GSRFIETLRGVGYRLR 217


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD ALA  + ++L+SE F   +V D GE  +   +    D ++LDL L  + G 
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRESRPDIVLLDLMLPGMSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R++R  +   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR  
Sbjct: 63  DVARSIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L 
Sbjct: 122 DAAPELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R   + ++++V + +LR K+         I TV G GY
Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224


>gi|85715803|ref|ZP_01046782.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A]
 gi|85697456|gb|EAQ35335.1| DNA-binding response regulator [Nitrobacter sp. Nb-311A]
          Length = 221

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD     ++   L      V     G DG+      E  A +LD+GL ++ GF
Sbjct: 1   MRLLLIEDDAMFGKALVRGLGQNGMTVDWIRDGSDGLAALTRAEHAAALLDIGLPEMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A+R ++   P+ I++    +ED V GL  GADDY+ KPF+   L+ARIRA+VRR+ 
Sbjct: 61  EILKAMRSSRRMPPILIITARDHVEDIVAGLDLGADDYLIKPFDLRTLLARIRAVVRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+ + D+++N        +     L+ +E+ ++  L     T L++      +Y 
Sbjct: 121 ARTSALMTSKDIALNPSTYVATFRDVEATLSAREFSVLYALMEHPGTILSRSQIEMRIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E +   +DV I  LRKK      GK+ I  + G G+V+
Sbjct: 181 WGEEIQSNAVDVVIHGLRKKF-----GKDMIHNIRGAGWVV 216


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+D+  L   ++  L++    V     GE+GI L +  E D I+LD+ + D+ GFE
Sbjct: 3   KILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALAR-QEPDLILLDIMMPDMNGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V RA+R  +I  P+  LS   +  DK+  L  G DD+ISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRAIR-DQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120

Query: 121 ---GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               H Q   + +   DLS++L    V +    I L+ +EY+++ELL+LR     ++E  
Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   I K+RKK +  +  K YI TVWG GY
Sbjct: 181 YERVWGCDAEGDAYTVVEHIRKIRKKFAQVSSEKEYISTVWGIGY 225


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + VY    GE+ I++ +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K   P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR + 
Sbjct: 64  VCRELR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               L        IV G L ++ DA  V  +   I LT +E++++  L       +T+E 
Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLR 231


>gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E + V  +  G++G+ L     +D I+LD+ L    G 
Sbjct: 4   MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPVKNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++LR + I TP+ +L+   SIEDK++GL  GA+DY++KPF+  EL+ARIR  +R + 
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRIT- 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L  KT       I LT KE+ ++E L   KN  L++      L  
Sbjct: 123 TTTQTKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D     I++V+I +LR K+      K  I+TV G G+ + E+
Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225


>gi|326334021|ref|ZP_08200250.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948170|gb|EGD40281.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium
           Broad-1]
          Length = 238

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   L  ++++ L+ E + V       D ++      +D ++LD+ L D  GF
Sbjct: 1   MRVLIVEDQAGLVSALKVALQREGYAVDGAGSVADALDKLGLNAYDLVVLDVNLPDGSGF 60

Query: 61  EVLRALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           EV  ALR   +         + +L+  + ++D+VRGL  GADDY++KPF   EL AR+RA
Sbjct: 61  EVASALRTGGVEIAGEEVPRILMLTARNRLDDRVRGLDVGADDYLTKPFELAELTARLRA 120

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR      S++  G + ++  A+ +  +G R + LT KE+ ++  L  R    ++ E 
Sbjct: 121 LLRRPSSDGTSVLTHGPIRLDT-ARQLARRGDRELGLTLKEFSVLRYLMTRPAFIVSAEE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L H++D   +P  + + V +  LR+KL+        +ETV GRGY LR+
Sbjct: 180 LLEHVWDENADPFTQTVRVTVGTLRRKLT-VGDEPPALETVVGRGYRLRD 228


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F V     G + +   +    D I+LD+ L D+ GFE
Sbjct: 9   RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR     TPV  L+   + EDKVRGL  G DDY++KPF+ +E++ARIRA++RR+ G
Sbjct: 69  IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAG 128

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+ ++ ++  V   G  I L+  E++++  L L     L+K   L+H+
Sbjct: 129 DPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHV 188

Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D  R E    I++ ++  LR+K+         I T+ G GYV+R
Sbjct: 189 WDHVRGE---GIVESYVSALRRKIDKDR--PRLIHTIRGVGYVMR 228


>gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
 gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
          Length = 274

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G 
Sbjct: 38  VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A+  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ 
Sbjct: 98  SVLQLMRRAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 157

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 158 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 217

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LR+K+    G +  I T  G GY+++
Sbjct: 218 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 259


>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Erwinia amylovora CFBP1430]
 gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora CFBP1430]
 gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLD-STVDLLLLDVMMPKKNGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q  +   + S  LD   + +          G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQHLQHDNSSPTLDIDLLRLNPGRQEASFDGQTLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLM 229


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E + V V + G+  IEL +  + + I+LD+ L    G E
Sbjct: 4   KILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  + + PV +L+   +  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VLREVRKTQ-NIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +++     IV GDL V+ DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV + +LR+K+        +I T  G GY LR
Sbjct: 183 TVWGYDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYLR 228


>gi|325970045|ref|YP_004246236.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324025283|gb|ADY12042.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 128/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   +  +L+   +    T  G++ + L + +  D +ILD+GL  + G E
Sbjct: 4   KVLVVDDERDIQDVLAFVLEDAGYETRTTGRGDEALVLAQEWLPDIVILDIGLPGLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V    R+  +  PV +LS     +  V GL+ GA+DY+SKPFN +EL+ R+  I+RR+R 
Sbjct: 64  V--CPRLVAMDIPVIVLSSHDRDDQIVEGLEVGAEDYVSKPFNLKELLLRVEKILRRTRP 121

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +   G L++++    V ++G  I+LT  EY+++E L+   +T ++ EM L  ++
Sbjct: 122 AEAAAALLAIGSLTIDMRKSAVSIEGELINLTPTEYKIVEFLAKHAHTPVSSEMLLQQVW 181

Query: 180 DGRDE---PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +    PE  ++ V I +LRKKL        Y+   WG GY+L + +
Sbjct: 182 NAEEWIQGPE--MVKVNISRLRKKLEKDPSNPRYLLNRWGYGYLLTDTS 228


>gi|322383663|ref|ZP_08057414.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151875|gb|EFX44818.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 241

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGL-TDIP 58
           M++L++ED++A+   + + LK +   V   + GE+ I L  K  +    ILD+ L T++ 
Sbjct: 6   MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V   LRV      + +L+  S   DKV GL+ GADDYISKPF+  ELVARI A+ RR
Sbjct: 66  GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 125

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  A++    ++  G   ++LD + +   G  I LT  E+ ++ +     N +++++  
Sbjct: 126 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++      + KI+DV I ++R+K+        YIETVWG GY+ + +
Sbjct: 186 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 235


>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  ++   L+ + F V      EDG++L     +D IILD+ L  + G+
Sbjct: 1   MKLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGY 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E  R LR    S  P+ I++ +  I+ ++ GL+ GADDY+ KPF+  EL AR+RA++RR+
Sbjct: 61  EFCRFLREEIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRRN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  ++ +I  G L+ +  +         + LT +E  ++EL      T  ++E   + ++
Sbjct: 121 QLRSEPVIRYGPLTYDSRSGVFSCSKKELSLTSRESSILELFLRNPGTVFSREEITDKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   E    I+DV+I  +R+KL  AAG  + I+TV  +GY LR
Sbjct: 181 ETGFESRSNIVDVYIRYIRRKL-EAAGILDIIQTVPRKGYGLR 222


>gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
 gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
          Length = 236

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   LK+  +       GE  I +   +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R++R    + P+ +LS  S   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G    + V G L ++  A  V +  + +HLT  EY+++ +L+      LT       
Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSITQK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++    E ++  + V++  LRKKL       + I+T  G GY +     DE+
Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERCPDAPHLIQTHVGVGYRMLRVENDES 236


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IED+  +    +  L+SE + VY  + GE+G  L + Y+ D I+LDL +    G+E
Sbjct: 4   RIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R    + P+ IL+  +   D++ GL  GADDY++KPF+  ELV R++ ++RR   
Sbjct: 64  LCEEIR-QHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I   DL ++   + V V GH I LT KE++++ +++       ++   
Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D   E     + V + +LR+KL        +I TVWG GY    +  +E
Sbjct: 183 LEQIWDFEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFDPDGGNE 236


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|167968526|ref|ZP_02550803.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           H37Ra]
          Length = 226

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +  ++ + L    + V     G   +     +  D +ILDLGL D+ G +V
Sbjct: 4   VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDLVILDLGLPDMSGIDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   ++ PV +LS  +   DKV+ L +GADDY++KPF  +E +AR+RA VRR+   
Sbjct: 64  LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A   Q +I T   +V+L  K V   G  +HLT  E+ M+E+L+  +   + +   L  ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222


>gi|197119827|ref|YP_002140254.1| heavy metal transcriptional response regulator CusR [Geobacter
           bemidjiensis Bem]
 gi|197089187|gb|ACH40458.1| heavy metal transcriptional response regulator CusR [Geobacter
           bemidjiensis Bem]
          Length = 223

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M  L++ED +  A  +   L   +  V V   G  G+ + +  ++D I+LDL L  I GF
Sbjct: 1   MYFLIVEDAEKTAEQLRRGLSEMSVTVDVASDGLKGLAMARERDYDLIVLDLMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    +TPV IL+    + D++ GLQ GADDY+ KP++  EL AR++A++RR +
Sbjct: 61  EVVKRLREGGSTTPVMILTARDEVHDRITGLQLGADDYLVKPYSFAELCARVQALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I   DL+VN  A      G  + LT KE+ ++ LL  R     ++      +++
Sbjct: 121 VVQQDEIQVADLTVNFFAHKATRAGKNLELTPKEFALLSLLIRRAGEVQSRLRIAERVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  +KI+DV +  LR K+ +    K  I TV G GY+L +
Sbjct: 181 LGFDANLKIVDVKVAALRAKV-DGPYEKKLIHTVRGLGYILED 222


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD+ LA      L+     V +   G +G+     + +D ++LDL L    G 
Sbjct: 16  IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  +   P+ +++      D+V GL++GADDY+ KP++  EL+ARIRA VRR+R
Sbjct: 76  EVCRELRT-RSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 134

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+A    Q L V G L ++  + T  + G  + LT  E+ ++ +L+ R    L++E  L+
Sbjct: 135 GNAGPSLQPLNV-GRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLD 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +    DE   + IDV I +LR+KL         ++TV G GY+L
Sbjct: 194 LIKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238


>gi|314965527|gb|EFT09626.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL082PA2]
 gi|315094280|gb|EFT66256.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL060PA1]
 gi|327329071|gb|EGE70831.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL103PA1]
          Length = 227

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD     ++ + L +  + V +   G+  +E+   ++ D I+LDLG+  + G 
Sbjct: 1   MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R    S P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + V+L A TV   G  + LT  E++++ELL   +   +T++  L+ 
Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   + ++I +LRKKL        Y+ T  G GY L
Sbjct: 180 VWGSEHVADTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+A+A      L++ ++ V + + GE G++     +F  I+LD+ L    GF+
Sbjct: 3   RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           V R LR  K + P+ ++S      DK+RGL  GA+DYI KPFN  EL+AR+++ +    R
Sbjct: 63  VCRNLRAVK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 118 RSRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++G    ++ +   +L+++L++  V + G+ + L  KE++++  L+   N   +K+   
Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E+  + V I ++R+K+   +    +IETVWG GY  R+
Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229


>gi|217968617|ref|YP_002353851.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217505944|gb|ACK52955.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L+   F + V + G+   +  +   +D +ILDL L  + G 
Sbjct: 1   MRLLLVEDHAELAEWVARSLRHAGFVLDVLNRGDHADQSLRTERYDLVILDLSLPGLDGL 60

Query: 61  EVLRALRV------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           EVLR LR           TPV +L+   S E++V GL  GADDY+ KPF   EL ARI+A
Sbjct: 61  EVLRRLRNRESGPDKPAPTPVLVLTARGSTEERVHGLNLGADDYLPKPFELAELEARIKA 120

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           ++RR+ G+   L+  G L  +   +   V G  + LT +E  ++E L  R    + +E  
Sbjct: 121 LLRRA-GNQVPLVRLGRLEFDTTTRMAAVDGQALALTPRELAVLEALLARVGRPVAREAL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++   +  V+ I++++ +LRKKL    G    I T+ G GY+L E 
Sbjct: 180 FEKVFEFDADARVEAIEIYVSRLRKKLE---GAGVAINTLRGLGYLLAEK 226


>gi|149276901|ref|ZP_01883044.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149232570|gb|EDM37946.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 125/226 (55%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           M+IL+IED+  LA  +   L  ++   Y+ +L  D     E    + +D I+LDL L   
Sbjct: 1   MKILIIEDEPELAKGMVGYLAGQS---YLCELATDYHQAWEKIGTHHYDCILLDLMLPGG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  L+       V I+S  +++EDK+RGL+ GADDY++KPF+  EL ARI +++R
Sbjct: 58  NGMKILDQLKAQNKEDGVIIISAKNALEDKIRGLELGADDYLAKPFHLSELSARIFSVIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      + I  G+L V+L AKTVEV G  + LT KE+ ++      KN  ++K     H
Sbjct: 118 RKNFANSNFIQQGELKVDLLAKTVEVAGSVVTLTKKEFDLLLFFMGNKNKVISKSALAEH 177

Query: 178 ----LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               L D  D  +   I   I  L+KKL+  AG  NY++T++G GY
Sbjct: 178 LSGDLADMLDNHD--FIYAHIKNLKKKLTE-AGSVNYLKTLYGNGY 220


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G+      +++ IILDL L  + GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRRVRDEK-NTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  +   ++  L    + V   + G+ GI L +   FD +ILD+ +  + G++V
Sbjct: 5   ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLDGWQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
              +R      PV +L+    +ED+V+GL  GADDY+ KPF   EL+ARIRA++RRS + 
Sbjct: 65  CGQIR-EYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGKT 123

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            AQ  I++  DLS++   + V     +++ T +EY++++L        L KE+ +  ++ 
Sbjct: 124 EAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + E  +++V+I  LR KL  A G K  I TV G GYVL+E
Sbjct: 184 YDYQGESNVLEVYIVMLRNKLE-ACGEKRLIHTVRGAGYVLKE 225


>gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 224

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +D    A  I   L      V     G + +       FDAI+LD  L    G 
Sbjct: 1   MKILVADDQAETADFIRRGLSQAGHVVATVGTGTEALFRAMEESFDAIVLDRMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+ M  I D+V GL++GADDY++KPF   EL AR+  I+RR  
Sbjct: 61  SVLKMLRAGGNRTPVILLTAMGGISDRVEGLENGADDYLTKPFALSELSARLNVIMRRPA 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G++ ++L  +TV   G RI L  +E  M+E L    +  +TK M L  ++
Sbjct: 121 VVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELMRNVHRVMTKAMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P   I++  I +LR KL NA    + I TV G GY++R
Sbjct: 181 DFDFDPHTNIVETHISRLRAKL-NAGFDDDAIITVRGAGYMIR 222


>gi|330446154|ref|ZP_08309806.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490345|dbj|GAA04303.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 230

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED + +A+ I    + + + +   + G  G EL K + +D IILD+ L  + G+
Sbjct: 1   MKLLLIEDHQDIANIIFDFFEIKGYTLDYANNGLQGYELAKQHHYDLIILDIMLPRMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR   I TP+ +L+   + ED + G  +GADDY+ KPF+ E L ARI A+ RR +
Sbjct: 61  MVCQQLREDGIDTPILMLTARDTREDTLEGFATGADDYLIKPFDLEILEARITALTRRRK 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   + I+  GDLS++L       +  +I L   ++ +++L+ LR    L K+  +N L+
Sbjct: 121 GTTATQILQFGDLSLDLKTHIATRENRQISLNPTQFTILKLMLLRAPNILKKQEVMNTLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            G DEPE  ++   I +LR ++ +     +YI+T+   GY L +  K++
Sbjct: 181 -GDDEPENNVLRSHIYQLRTQI-DKGFSHSYIKTIPKVGYQLIKQMKED 227


>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           MSMB43]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDAAIRRLRAKIDDAYEPK-LIHTVRGMGYVL 219


>gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 229

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +  +IE+ LK++N+NV     G D +EL +  + D  ++D+ +  + G E+
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNKIDLFLVDIMMEGMDGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ ILS  S + DKV GL  GADDYI+KPF+  EL+ARI++ +RR    
Sbjct: 64  TQKIREVS-NAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLELS 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    ++   G L++N D K V + G  I LT  EY +I LL   K    T E    +
Sbjct: 123 KDKSLNGNIFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYEN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++       KI+ V I +LR+K+       + I++V+G GY
Sbjct: 183 VWEAPPYDVKKIVSVHISRLREKVEINPRRPDLIKSVYGMGY 224


>gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 EDL933]
 gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli
           O157:H7 str. EDL933]
          Length = 219

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11]
 gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1]
 gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989]
 gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9]
 gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O157:H7 str. FRIK966]
 gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9]
 gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB
 gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11]
 gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli 55989]
 gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI1]
 gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. TW14359]
 gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli W]
 gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli
           EC4100B]
 gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14]
 gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010]
 gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68]
 gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180]
 gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1044]
 gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9]
          Length = 219

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|332284405|ref|YP_004416316.1| two-component transcriptional regulator [Pusillimonas sp. T7-7]
 gi|330428358|gb|AEC19692.1| two-component transcriptional regulator [Pusillimonas sp. T7-7]
          Length = 235

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 3/229 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFEV 62
           L+IEDD+  A  I    +       V   G +G++      +  IILD  L + I G  +
Sbjct: 6   LIIEDDRDNARYIADGFRELGHWPVVCHDGAEGLQRATSEPWHIIILDRMLPNQIDGLSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   I TPV +LS +++++++VRGL+SG DDY++KPF   EL+ R  A+VRRS+ +
Sbjct: 66  LTTLRGVGIKTPVIVLSALTALDERVRGLKSGGDDYLTKPFALIELLTRAEALVRRSQSN 125

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A + ++T  DL ++L +      G  + L  +E +++  + +  +  LT+ M L  ++  
Sbjct: 126 ASNRVLTVADLRLDLTSSKATRSGKPLSLQPRETRLLTYMMMHPDQVLTRAMLLGAVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229
           +  P+  +ID  + +LR+K+     G   I TV G GY L  +  +DET
Sbjct: 186 QFNPQTNVIDAAVSRLRQKVDGDQQGPALIHTVRGVGYTLTSQPGRDET 234


>gi|262377412|ref|ZP_06070635.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262307642|gb|EEY88782.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 237

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 9/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +++ L+++ +   + + G+ G+EL      D +ILDLGL D+ G+EV
Sbjct: 14  VLIIDDENQIRKFLDIALRAQGYKTLLAENGQKGLELLALQGADLVILDLGLPDLDGYEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR      PV +LS  ++ E+KV+ L +GA+DY++KPF+ +EL+ARIR ++R+   H
Sbjct: 74  LSELRTWS-HVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELMARIRVLLRQ---H 129

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             S + T     G L ++   + V +    + LT KEYQ++ LL+  K   +T+   L  
Sbjct: 130 QHSTVDTAIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKE 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           L+    + +   + + + KLR KL++ A    YI T  G G
Sbjct: 190 LWGPTHQEDTHYLRILVAKLRVKLNDNAVQPKYIITEPGVG 230


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LD  L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGY 220


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 16/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  IE+ LK E + V     GE  IE+ +    D ++LD+ +  + G+EV
Sbjct: 6   ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-----K 171
              +    S++  G + ++ + +TV V G RI LT KE+ ++ LL+       +     +
Sbjct: 125 NQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIFQ 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ N  YD  +      + V I  LRKKL         I+T+WG GY  
Sbjct: 185 QIWTNDYYDDNNN----TVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  125 bits (314), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +  +++  L+ E + VY  + G   +E+ +  + D +ILD+ L  + GFE
Sbjct: 9   RILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  L+      P  ILS      DKV G   GADDY+ KPF   EL+ R+RAI+RR+ G
Sbjct: 69  VLAQLQSTG-GVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +     +   D+ +N  ++TV V+G  + LT KE+ ++ LL+       ++E  L 
Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V + +LR+K+    G    I+T+WG GY
Sbjct: 188 RVWHSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGY 230


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   I   LK + F++     G D +   +    D ++LD+ + D+ GF
Sbjct: 5   MHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  L+  S  ED++RGL+ GADDYI KPF+  EL ARI   +RR R
Sbjct: 65  EVCQRIRQTS-QIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIR 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +  +S I  GD+ ++ D + V +    I+LT +E+ ++  L L +    ++E     L
Sbjct: 124 GLSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++       ++ +D  I  LR KL    G + +I+TVWG GY   E 
Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEE 227


>gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
 gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK+  +     + G + I     +  D I+LDLGL D+ G +V
Sbjct: 6   ILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHNPDIILLDLGLPDMEGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDYI+KPF+ EEL+ARIR   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAVI 124

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G  Q  ++ + G+L ++  A    ++G  +HLT  EY+++ LL       LT      
Sbjct: 125 QTGEIQKTAVFINGELKIDYTAGCTYMRGEELHLTPIEYKLLCLLYCNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKKL +      YI+T  G GY
Sbjct: 185 QIWGRSSENDVASLRVFMATLRKKLESDKNEIQYIQTHIGIGY 227


>gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37]
 gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37]
          Length = 226

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD   A  I   LK + F V +V D G + +  C + + D  I+D  +  + G
Sbjct: 1   MKILLAEDDPKSADYICKGLKEQGFVVDWVAD-GREALTYCLYNDADLAIVDRMMPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ALR AK + PV  L+ +S ++D+V GL +G DDY+ KPF+  EL+ARI  + RR 
Sbjct: 60  LSLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVLGRRP 119

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   Q  + +V  DL +NL  +  + QG  I L GKE+ +++L         ++ + L  
Sbjct: 120 KQSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTLILEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P   +++  + KLR+K+ +       I TV   GY +R
Sbjct: 180 IWDFNFDPGTTVVETHVSKLRQKV-DKPFDVALIHTVRNMGYTIR 223


>gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 245

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L+   F V   D  +DG+ L +  + +    I+LD+ + ++ G
Sbjct: 5   ILVVDDDPVVRELVSGYLQGRGFKV---DTLQDGMALQRQLQHERPALIVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+  
Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKIFVTHAMTVLTRAQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 182 LLEKLHGNSELHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 216

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD A+   IE+ L+   + V     GE+  E+    + D ++LD+ L  I GF
Sbjct: 1   MRILVVEDDLAIGDLIEINLQMSGYEVLKAIDGEEAKEVFDKEDIDLVLLDVMLPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ ++  K   PV  L+  +S+ DKV+GL+ GADDYI KPF   EL+ARI  + RR  
Sbjct: 61  QLIKYIK--KKDIPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRY- 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   ++ V+++ + V++ G  + LT KE+Q++ L    KN  L++E  LN ++ 
Sbjct: 118 NKDDKIIKFKNIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +D+ + +LR+KL      +N I+T++  GY L+E
Sbjct: 178 YDYVGETRTVDIHVNRLREKLD----LRNNIKTIFKVGYRLQE 216


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                I  V GD+S+ +    V V+G  +    KE++++E L   K   +T+   ++ ++
Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 GSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGY 221


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+   F V +   GEDG++      +D IILD+ L  I GF+
Sbjct: 3   KILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVH-NMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121

Query: 121 --GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              H Q+  ++    ++++  A+ V V G  I  T KE+ ++       N  L+KE    
Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +      +V  + V I KLR+K+        ++ETVWG GY
Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGY 224


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++DDK + + I + L++E      T   ED IE  K  E   FD I+LD+ + ++ 
Sbjct: 4   KILIVDDDKDIRNLISVYLENEGLQ---TQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR
Sbjct: 61  GIEACLKIREEQ-TIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119

Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            + +       ++ I    L++N D + V V+   + LT KE+ ++ELL+  K   L+ E
Sbjct: 120 HKKYNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++  +       + V I K+R K+   +    YI+TVWG GY
Sbjct: 180 KIYEAVWKEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGY 226


>gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 227

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+++L + +++ L  EN+ V   + G+D +EL +    D ++LDL L DI GF
Sbjct: 1   MKILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     ++I  G + +  D + V +    +  T  E++++ L+        T+E 
Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++        + +D+ I ++RKKL +       I+T++G GY
Sbjct: 181 LLDTIWGYDFSGNTRAVDIHIKRIRKKLLDHEDA---IKTIYGVGY 223


>gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
 gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
          Length = 246

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 21/244 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           ++IL++EDD  + + I   L++   N Y  DL  +G   +     + +D ++LDLGL D 
Sbjct: 5   IKILIVEDDGPIRNLIATALQT---NAYKYDLAANGKTALLALSTHHYDIVLLDLGLPDK 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E++  LR    +TP+ ++S  ++ EDK+  L +GADDY++KPF+ EEL+AR+R+ +R
Sbjct: 62  DGIEIIDQLRTFS-TTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRSTLR 120

Query: 118 RSR-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R++          +     GDL ++  ++TV  QG  +HL   EY ++ LL+      LT
Sbjct: 121 RAQFLENQKSQREEIAFENGDLKIDYPSRTVYFQGKELHLMPIEYNLLCLLAHNVGRVLT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL------REN 224
            +  L+ ++    E ++  + V++  LRKK+   +  K YI+T  G GY +      +E+
Sbjct: 181 HQYILDKVWTNAMESDLSSLRVYMTTLRKKIEKNSMQK-YIQTHIGVGYKMIRVTDTKED 239

Query: 225 AKDE 228
           + DE
Sbjct: 240 SNDE 243


>gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 234

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDDK     +   L+ E   V +   G +G+      ++D ++LD  L D+ G 
Sbjct: 11  VKILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRMLPDLDGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TP  +L+ +S + D++ GL++GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 71  SLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPG 130

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +  GDL ++L    V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 131 LQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P+  +++  I +LR K+      +  IETV G GY
Sbjct: 191 DITFDPQTNVVETHISRLRAKVDRPFDNE-LIETVRGAGY 229


>gi|90578805|ref|ZP_01234615.1| hypothetical two-component response regulator [Vibrio angustum S14]
 gi|90439638|gb|EAS64819.1| hypothetical two-component response regulator [Vibrio angustum S14]
          Length = 230

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED + +A+ I    + +++ +   + G  G EL K + +D IILD+ L  + G+
Sbjct: 1   MKLLLIEDHQDIANIIFDFFEIKSYTLDYANNGIQGYELAKQHHYDLIILDVMLPRMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR   I TP+ +L+   + ED + G  +GADDY+ KPF+ E L ARI A+ RR +
Sbjct: 61  IVCQQLRKDGIDTPILMLTARDTREDTLEGFATGADDYLIKPFDLEILEARITALTRRRK 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G+  + I+  GDL ++L       +  +I L    + +++L+ LR   TLTK+  +N L+
Sbjct: 121 GNTAAQILQFGDLFLDLKTHIATRENRQISLNPTLFTILKLMLLRAPDTLTKQELINTLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            G DEPE  ++   I +LR ++ +     +YI+T+   GY L +  K++
Sbjct: 181 -GDDEPENNVLRSHIYQLRTQI-DKGFNHSYIKTIPKVGYQLIKQIKED 227


>gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 4/233 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  + + V +        +     E+D +ILD+ L ++ G 
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R      P+ +++   +I DK+ GL +GADDY+ KP +  EL AR+RA++RR  
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q ++  G   + LD  T EV      + LT KEY ++ELL       L++ M ++ +
Sbjct: 121 ATCQPVLEWG--PIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSI 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +     PE   + V +  LR+KL +A    + IETV G GY L    +   C+
Sbjct: 179 WKLESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRLANLTEKSLCQ 231


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 5   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +  TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 65  VARQIR-KEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233


>gi|255654544|ref|ZP_05399953.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296449314|ref|ZP_06891097.1| response regulator [Clostridium difficile NAP08]
 gi|296880754|ref|ZP_06904704.1| response regulator [Clostridium difficile NAP07]
 gi|296261841|gb|EFH08653.1| response regulator [Clostridium difficile NAP08]
 gi|296428249|gb|EFH14146.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK +   I++ L+++N+    TD G   I L    + D IILDLGL DI G EV
Sbjct: 7   VLIVEDDKPICKFIKVSLETQNYRCVETDNGGTAISLIHSLDPDLIILDLGLPDIDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    +  + ++S      DKV  L  GADDY++KPF+  EL+AR+R  +R     
Sbjct: 67  IGRVRACAKTNKIIVVSAREHERDKVEALDGGADDYLTKPFSVTELLARVRVALRNKAQQ 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A       +L ++ +  TV +    IHLT  EY++IEL+S      LT +  ++
Sbjct: 127 GNINNDAPKSFEVKNLKIDYENHTVLINDEEIHLTPIEYKIIELMSKYSGRVLTHKFIID 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E E + + VF+  +R+K+        YI T  G GY
Sbjct: 187 KVWGNYYESENQSLRVFMASIRRKIEKNPAQPEYILTEVGVGY 229


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+ ++   +   LK E ++V      E+ +++ +  + D  I+D+ L  + GFE+
Sbjct: 6   ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +    TPV  LS  S   DKV GL+ GADDYI+KPF+  E +ARIRAI RR +
Sbjct: 66  VRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQ 125

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q+       I   DL ++ +   V V+G  ++LT  E++++  L+  +    ++++ 
Sbjct: 126 QSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56']
 gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56']
          Length = 270

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   +   L+ E F+V     G+DG+ L +  + DAI+LDL L D  GF+
Sbjct: 46  KILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGFK 105

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+      DK+RGL +GADDY++KPF+  EL+AR+RA+ RR+  
Sbjct: 106 VCEDLRRWDAFVPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRRAAR 165

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++   +   G++ +N+ A TV        L+  E +++ LL  R    +++E  L  +
Sbjct: 166 PAEAPVEVFSIGNVQINMTAHTVSRGSRSDQLSFYEVELLRLLHERLGQPVSREEILQKI 225

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     P  + +D FI KLRKK+  +     +I TV+G GY L
Sbjct: 226 WGIEAGPSNRTVDNFIVKLRKKIERSPDKPEHILTVYGFGYKL 268


>gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 235

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   ++ + + + ++V V   G+ G++  +   + A++LDL L +I G +
Sbjct: 13  QILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120
           V + ++  +   PV ++S ++ + DKV  L+ GADDY++KPF+  EL+AR++A + RR +
Sbjct: 73  VCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQK 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +    GD  ++    T    G  I LT  E+++++         L++++ LN ++ 
Sbjct: 133 TSAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVWG 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               P  + +D  I KLR+KL   +    Y+ TV+G GY
Sbjct: 193 YNSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGY 231


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           R+LL++DD A+   +   L+ E + V       DG+E L K  +   ++LDL L  + G+
Sbjct: 3   RVLLVDDDPAIREVLSAYLRQEGYEVVEA---ADGLEALGKIPQASLVVLDLMLPRLSGW 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      PV +L+     E+++RGL  GADDY++KPF+  E+VAR+RA++RRS 
Sbjct: 60  EVARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  +  G+L +    +   + G  + L+  E+ ++  L+       ++E  L  ++ 
Sbjct: 120 LKAE--LAFGELVIRPREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVW- 176

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G D P V +++DV I  LRKKL        YIETV G GY  +E 
Sbjct: 177 GTDFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRFQEE 221


>gi|167765966|ref|ZP_02438019.1| hypothetical protein CLOSS21_00457 [Clostridium sp. SS2/1]
 gi|317497234|ref|ZP_07955558.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167712323|gb|EDS22902.1| hypothetical protein CLOSS21_00457 [Clostridium sp. SS2/1]
 gi|291558760|emb|CBL37560.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895479|gb|EFV17637.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK+ ++     + G   I     ++ + I+LDLGL D+ G +V
Sbjct: 6   ILVVEDDRPIRNLIVTTLKTHDYKYITAENGSSAILEASSHKPEIILLDLGLPDMEGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116
           ++ +R    + P+ ++S  S   DK+  L +GADDYI+KPF+ +EL+ARIR      A++
Sbjct: 66  IKKVRTWS-NVPIIVISARSEDVDKIEALDAGADDYITKPFSVDELLARIRVTQRRLALI 124

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      Q++ V G+L ++  A +  ++   +HLT  EY+++ LLS      LT      
Sbjct: 125 QSGEEQEQAVFVNGELKIDYTAGSTYLKDKELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKKL     G  YI+T  G GY
Sbjct: 185 QIWGSSLENDVASLRVFMATLRKKLQPDKDGMQYIQTHIGIGY 227


>gi|50841610|ref|YP_054837.1| two-component response regulator, KdpE [Propionibacterium acnes
           KPA171202]
 gi|282853167|ref|ZP_06262504.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J139]
 gi|289424544|ref|ZP_06426327.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes SK187]
 gi|289427413|ref|ZP_06429126.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J165]
 gi|295129651|ref|YP_003580314.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137]
 gi|50839212|gb|AAT81879.1| two-component response regulator, KdpE [Propionibacterium acnes
           KPA171202]
 gi|282582620|gb|EFB88000.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J139]
 gi|289155241|gb|EFD03923.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes SK187]
 gi|289159343|gb|EFD07534.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes J165]
 gi|291375781|gb|ADD99635.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137]
 gi|313771208|gb|EFS37174.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL074PA1]
 gi|313806990|gb|EFS45488.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA2]
 gi|313811899|gb|EFS49613.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL083PA1]
 gi|313814092|gb|EFS51806.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL025PA1]
 gi|313817774|gb|EFS55488.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL046PA2]
 gi|313821400|gb|EFS59114.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA1]
 gi|313824655|gb|EFS62369.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA2]
 gi|313826324|gb|EFS64038.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL063PA1]
 gi|313828890|gb|EFS66604.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL063PA2]
 gi|313832090|gb|EFS69804.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL007PA1]
 gi|313832894|gb|EFS70608.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL056PA1]
 gi|313839754|gb|EFS77468.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL086PA1]
 gi|314922627|gb|EFS86458.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL001PA1]
 gi|314926441|gb|EFS90272.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL036PA3]
 gi|314961462|gb|EFT05563.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA2]
 gi|314969258|gb|EFT13356.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL037PA1]
 gi|314975328|gb|EFT19423.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL053PA1]
 gi|314977744|gb|EFT21839.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL045PA1]
 gi|314980122|gb|EFT24216.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL072PA2]
 gi|314982686|gb|EFT26778.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA3]
 gi|314985281|gb|EFT29373.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA1]
 gi|314990529|gb|EFT34620.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA3]
 gi|315081718|gb|EFT53694.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL078PA1]
 gi|315082908|gb|EFT54884.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL027PA2]
 gi|315086743|gb|EFT58719.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA3]
 gi|315088146|gb|EFT60122.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL072PA1]
 gi|315091346|gb|EFT63322.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL110PA4]
 gi|315097031|gb|EFT69007.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL038PA1]
 gi|315104999|gb|EFT76975.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA2]
 gi|315107591|gb|EFT79567.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL030PA1]
 gi|315109998|gb|EFT81974.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL030PA2]
 gi|327332628|gb|EGE74363.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL096PA2]
 gi|327333805|gb|EGE75522.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL096PA3]
 gi|327334683|gb|EGE76394.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL097PA1]
 gi|327444730|gb|EGE91384.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL013PA2]
 gi|327446589|gb|EGE93243.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL043PA2]
 gi|327448969|gb|EGE95623.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL043PA1]
 gi|328757844|gb|EGF71460.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL020PA1]
 gi|328759713|gb|EGF73310.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL099PA1]
 gi|332674521|gb|AEE71337.1| KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes 266]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD     ++ + L +  + V +   G+  +E+   ++ D I+LDLG+  + G 
Sbjct: 1   MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R    S P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + V+L A TV   G  + LT  E++++ELL   +   +T++  L+ 
Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   + ++I +LRKKL        Y+ T  G GY L
Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223


>gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ ++  IE  L    F   + + G    E  +  ++D II+D+ +  + G 
Sbjct: 1   MKILIVEDEQNISSFIERGLNISGFETEICNDGLHAWEKLQITDYDLIIMDIIMPFMSGL 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ +A R      TPV +L+ +S+ ED V+GL +GADDYI KPF   EL ARI A++RRS
Sbjct: 61  ELCKAYRQKFGYITPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINALLRRS 120

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   +     ++   +L ++ + K     G+ I+LT KEY ++E      N  L+++  L
Sbjct: 121 KVSTEIEDDKILQISNLKLDTNTKQAIRDGNIIYLTAKEYLLLEYFMKNPNRVLSRQTLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++D   +    I+DV++  +R K+    G    I TV G GY+L+E
Sbjct: 181 ENVWDINFDTNTNIVDVYVNYIRNKIQ-PEGMDKLIHTVIGLGYILKE 227


>gi|314986976|gb|EFT31068.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA2]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD     ++ + L +  + V +   G+  +E+   ++ D I+LDLG+  + G 
Sbjct: 1   MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R    S P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + V+L A TV   G  + LT  E++++ELL   +   +T++  L+ 
Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVARDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   + ++I +LRKKL        Y+ T  G GY L
Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGYRL 223


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L++NL+  TV      I LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ +E+ +  + D +ILDL L ++ G +
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121

Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S +          GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 130/222 (58%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ++   +   LK++ ++V     G +  EL K  ++D I+LDL L  + G +
Sbjct: 3   RVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLD 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R+  I+  TP+ +L+ +   + KV GL++GADDY++KPF+ +EL+ARI A++RR+
Sbjct: 63  LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+++ L   G +  +  +K+V V G  IHLT  E Q++E          ++E  L  ++
Sbjct: 123 -GYSEVLEFEG-IVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +DV+I +LRKKL +      +++T+   GY L
Sbjct: 181 GVEHNETTRTVDVYISRLRKKLGDKG---KFLKTLPRLGYKL 219


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F  +    G++  +L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTT 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  ++   + I+TVWG GY    N  DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240


>gi|284037506|ref|YP_003387436.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816799|gb|ADB38637.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 224

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M+ILL+ED+ +LA  I   ++SE + +   DL  DG+    L     +D I+LD+ L  I
Sbjct: 1   MKILLVEDEVSLASFIRKGVESEGYEI---DLAYDGLVGQSLADNKTYDVIVLDVNLPHI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFE+ R ++       V +L+ + S+ DK  G  +GADDY+ KPF   EL+ RI+A+ R
Sbjct: 58  NGFELCRHIKREMPRQSVMLLTALDSLPDKESGFGAGADDYLVKPFEFRELMLRIKALAR 117

Query: 118 RSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R+   +  ++++   DL ++ +A +V   G RI LT +EY ++E L + +  T+++    
Sbjct: 118 RNSDFSGLKTVLRVADLELDTEAHSVYRAGQRIDLTAREYALLEYLMVNQGRTVSRVDIA 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   +    +I+V+I  LRKK+      K  + T+ G GYVLR
Sbjct: 178 EKVWDLHFDTSTNVIEVYINYLRKKIDKDYSQK-LVHTIIGMGYVLR 223


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E ++V V D G+ G EL     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  SICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRFP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     +  GDL ++ + +    QG  + L+ KE +++       +  LT +     
Sbjct: 121 SLEGTGTGRLKIGDLELDPENQVAYRQGRMVSLSDKEVKLLTYFMQHPHQLLTHKQIYQF 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L++  ++P   ++   I  LR+K+   +     I TV+G+GY
Sbjct: 181 LWEEPEKPNSNVLAALIRLLRRKIEEES---PLIHTVYGKGY 219


>gi|299068908|emb|CBJ40149.1| Putative DNA-binding response regulator in two-component regulatory
           system with BasS (basR) [Ralstonia solanacearum CMR15]
          Length = 216

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  L  ++   L+   +N        D  +      FDAI+LDLGL D  G   L 
Sbjct: 1   MIEDDLPLGTALARALRQAGYNTTWVRRLMDAQKWMTSNSFDAIVLDLGLPDGEGHLFLE 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR A+   PV I S   ++ ++++GL  GADD++ KPF  +EL+AR+RA++RR  G + 
Sbjct: 61  ELRAAQSDVPVIIASARDALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQST 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           +    G L V    K V   G+ + LT +EYQ++  L  R +  +T+E  ++ LY   + 
Sbjct: 121 NRWNVGSLVVEPSQKRVTQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++V I  LR KL     G+  I+T+ G GY++  N
Sbjct: 181 VSANALEVVIHHLRGKL-----GEGVIQTIRGVGYMIGGN 215


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A   +  L+   F V V + G  G+      +FD  ILDL L  I GFE
Sbjct: 3   RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|207738714|ref|YP_002257107.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206592082|emb|CAQ58988.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++                  FD 
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 62

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +E
Sbjct: 63  MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 122

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R   
Sbjct: 123 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+      
Sbjct: 183 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 237

Query: 228 ETCE 231
              E
Sbjct: 238 PPAE 241


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           EVLR  R+ ++S  P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++ 
Sbjct: 62  EVLR--RIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ + 
Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +       E  +IDV++  LR K+ +    K  I TV G GYV+++
Sbjct: 180 KVCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKD 225


>gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium
           variabile DSM 44702]
          Length = 231

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+++  ++   L    ++V     GE+   L      D +I+D  L  + G 
Sbjct: 1   MKILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGILPKVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR+LR +     V +LS  S + D+V GL +GADDY++KPF  EEL+AR+R++ RRSR
Sbjct: 61  EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120

Query: 121 GHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A ++          DL++N + + V     RI LT  E+ ++ELL       L++   
Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++ G D P     ++V+I  LR+K + A G    I TV G GYVLREN
Sbjct: 181 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEAEGEDRLIHTVRGVGYVLREN 229


>gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 7/202 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L   I   LK   + V + + G + +EL     +D I+LDL L +I G 
Sbjct: 1   MRILIVEDEKDLCQMIAKSLKESGYEVDIANNGNEAMELLDVENYDLIVLDLNLPEIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R     T + ILS  S I+DKV GL  GA+DY+SKPF+ +EL ARIR++ RR+ 
Sbjct: 61  EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +LS +   + V++    I LT KE  ++E L L +   +++E  ++H++D
Sbjct: 121 ITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELIDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
                    +D+F   +R  +S
Sbjct: 181 SS-------VDLFSNSIRVHIS 195


>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 230

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A+   +++ L+ E ++VY    GEDG+ + +    + ++LD+ L  I GFE
Sbjct: 4   KILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R LR       + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR   
Sbjct: 64  VCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             H  ++LI+     ++  ++        + LT  EYQ+++         L ++  LN +
Sbjct: 124 EEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNLV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+   A    +IETVWG GY
Sbjct: 184 WGEDFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGY 224


>gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile 630]
 gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-66c26]
 gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CIP 107932]
 gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-63q42]
 gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-76w55]
 gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-97b34]
 gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-37x79]
 gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-32g58]
 gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL K  E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMNGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +A+R   +  P+  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +  G L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   + K+R K S     K YI TVWG GY
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225


>gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 129/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK LA  IE +L  E   V V   GE G++L     +D  I+D  L    G 
Sbjct: 1   MRILIVEDDKRLARLIERVLSEERHTVDVAWDGESGLDLLMQGVYDVAIIDWMLPGRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + RA R A++ T + +L+    IEDKV G +SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SLCRAARAARLPTALLLLTARGQIEDKVLGFESGADDYLVKPFAFEELLARVRALGRRFH 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  A   +  G + ++L   T      R+ LT  E++++E L      TLT++  L+++
Sbjct: 121 PNLSANDELRVGTIVLDLRNYTARRGERRLDLTPTEWRLLEYLMRNVGQTLTRQQILDYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + + +++DV+I  LR+KL NA+G  + I T+ G GY L
Sbjct: 181 WSFEHDVQPQMVDVYISYLRRKL-NASGETDPINTIRGIGYRL 222


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 20/230 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGLT 55
           IL+++DD A+   +   LK+E   V         +E C  Y         D  ILD  L 
Sbjct: 4   ILIVDDDPAILEILRAYLKAEGHTV---------LEACDGYSAREQLPRADLAILDWMLP 54

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G ++ R  R + ++ P+ +L+     EDK+RGL  G DDY+ KPF+  E+VAR+RA+
Sbjct: 55  GVSGVDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRAL 114

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR     Q  I  GDL ++L   +  + G R+ L+  E+ ++  L+        +E  L
Sbjct: 115 LRRV--GVQEEIAVGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLL 172

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++ G D P   +++DV I  LRKKL + +    +IETV G GY  RE 
Sbjct: 173 ERVW-GSDFPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRFREE 221


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 232


>gi|207723030|ref|YP_002253448.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206588219|emb|CAQ18783.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 249

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++                  FD 
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 62

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +E
Sbjct: 63  MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 122

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R   
Sbjct: 123 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+      
Sbjct: 183 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 237

Query: 228 ETCE 231
              E
Sbjct: 238 PPAE 241


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD ALA  + ++L+SE F   +V D GE  +   +    D ++LDL L  + G 
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVAD-GERALAAFRENRPDIVLLDLMLPGMSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R++R  +   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR  
Sbjct: 63  DVARSIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L 
Sbjct: 122 DAAPELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R   + ++++V + +LR K+         I TV G GY
Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224


>gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
 gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri]
 gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
          Length = 221

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 120/201 (59%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L+H +   + +  + V + + G++ +E  K   +D IILD+ +    G 
Sbjct: 1   MRILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R     T + +L+ M   +DKV GL +GADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  EALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++  GDL++N + +++E   + I LT +E ++++   L  N  L+    +NH++D
Sbjct: 121 SYQVDVLEFGDLTLNGNDQSLESH-NSISLTNRENRLLQYFILNANKELSANELINHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             +  + + + + IC LR+KL
Sbjct: 180 ENETADQEDLWINICYLRQKL 200


>gi|87119136|ref|ZP_01075034.1| DNA-binding response regulator ColR, putative [Marinomonas sp.
           MED121]
 gi|86165527|gb|EAQ66794.1| DNA-binding response regulator ColR, putative [Marinomonas sp.
           MED121]
          Length = 237

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA +I   LK  N        G   + L + Y+FD II D+ +  + G  +
Sbjct: 12  VLIVEDNTALAANIIESLKEFNIECDYAKNGIQALSLAQLYQFDVIISDILMPAMDGITI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   ++TP+ +L+ +  IEDKV G   GADDY+ KPF   ELVARIR++  + R +
Sbjct: 72  CRKLRALDVTTPILLLTALGHIEDKVTGFSVGADDYLVKPFEMLELVARIRSLSEKQRIN 131

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+V  DL V+L   TV   G  I L+   ++++  L  +  + ++KE    HL+   
Sbjct: 132 PSRLVVE-DLQVDLKTHTVSRAGKPIFLSPTCWELLVFLMRKSPSLVSKEQIEQHLWRHN 190

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             PE  +  V + +LR+ +  +      + T+ G+G VL
Sbjct: 191 GTPETDVTKVHLYRLRQAIDKSFDCP-LLHTIRGQGVVL 228


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F+      G   ++  +    D I+LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R A+   P+ +L+  +   D V+GL+SGADDYI KPFN +ELVARIR  +R  + 
Sbjct: 64  ICTRVR-AESGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL V++ A  V    + I LT  E++++  L+ +     ++EM L  ++  
Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + + ++++V + +LR K+         + TV G GY
Sbjct: 183 HYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGY 220


>gi|313888461|ref|ZP_07822128.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845490|gb|EFR32884.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 10/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDDK +A SI + LK+ENF ++  + G + +E+ K  + D II+DL +  + G E 
Sbjct: 6   ILIAEDDKEIARSIGIYLKNENFEIFYAEDGLEALEIFKNEKIDLIIMDLMMPKLSGEEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR      P+ ILS  S   DK+ GL  GADDY+ KPFN  EL+AR+++ +RR   +
Sbjct: 66  IIKLREVSF-VPIIILSAKSEDTDKIFGLNIGADDYVQKPFNPMELIARVKSNLRRFYAY 124

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ I  G + ++L  K   V+   + LT  E++++ELL    N   + E     +
Sbjct: 125 DLKKDRNFIEIGSIKLDLSQKIAYVEDKPVALTSIEFKILELLMKNPNRVFSIEEIYESV 184

Query: 179 YDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +EP  E K + V I ++R+K+        Y++  WG GY
Sbjct: 185 W---NEPAMEAKTVTVHIRRIREKIEVNPKKPMYLKVQWGLGY 224


>gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
 gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
          Length = 224

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYE-FDAIILDLGLTDI 57
           M+ILL+ED+      ++  L    F    TD  +DGI       +E +D IILD+ L   
Sbjct: 1   MKILLVEDEPKTGDYLKQGLCEAGFP---TDWVQDGISGSHQALHETYDLIILDVMLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EVL+ +R A    PV  L+    + D+VRGL++GADDY+ KPF   EL+ARIR ++R
Sbjct: 58  SGWEVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R     ++   DL ++L  +       RI LT +E+ ++ LL  R+   L + +  + 
Sbjct: 118 RERSREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D   E +  +++V + +LR K+ +    +  I TV G GY L E 
Sbjct: 178 VWDMNFESDTNVVEVAVRRLRAKIDDPFEPR-LIHTVRGMGYTLEEK 223


>gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 219

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL     G ++I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD  +   ++  L  E + V V + G  G+ + K    + +ILD+ L  + G+E
Sbjct: 4   RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ ILS    +E KV+GL  GADDY+ KPF  EEL+AR++A++RR R 
Sbjct: 64  ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +I   DL ++L+A+ V   G+ + LT +E+ ++       N  LT+E  ++ ++  
Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++V+I  LR+K+ +   G   I TV G GYVL+E  
Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDY--GSRIIHTVRGVGYVLKEQG 223


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   ++V     G + + L    + D +ILD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 71  VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKR 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 131 SAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLRE 223
           +   E +  I++ +I  LR+KL       +   + I+T  G GY+LR+
Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRD 238


>gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ATCC 35469]
 gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia fergusonii ATCC 35469]
          Length = 219

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DAIILDL L  I G 
Sbjct: 1   MRILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ALA  I ++L+++ F       G   +        D ++LDL L  I G E
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 65  VCRLIR-DESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R + + ++++V + +LR K+         + TV G GY
Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGY 221


>gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 219

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL     G ++I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216


>gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
 gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
          Length = 241

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 13/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--------YEFDAIILDL 52
           M++L++EDD  ++  +E  LK+E +   V      G+ + K         +E   +ILD+
Sbjct: 1   MKVLIVEDDARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDV 60

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L D  G +V + LR    + PV +L+ ++S+ED+V GL+ GADDY+ KPF  +E++AR+
Sbjct: 61  MLPDGSGLDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARL 120

Query: 113 RAIVRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            A+ RR    +   A+  +   DL+++L+   +   G  I LT KE  ++ELL       
Sbjct: 121 EALGRRVGNAAPKQARKNLEVADLNLDLEKMRLSRAGREIQLTAKELALVELLMSAPGRL 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++E  L++++   ++P   ++DV+I +LR K+ +  G +  I T  G GY L
Sbjct: 181 FSRERILSNVWGVNEDPLTNVVDVYIRRLRTKI-DLEGLQPLIHTQRGLGYRL 232


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   + L +  ++DA+ILDL L  + G E
Sbjct: 6   QILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 66  ICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 125

Query: 121 -GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G AQ+   I    L+++   ++V++ G  + LT +E++++   +       ++   L  
Sbjct: 126 MGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLEQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++  + E     ++  I +LR K+   A     I TVWG+GY   E   D
Sbjct: 186 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELTYD 235


>gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 218

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +++ I++ L   N+       G   +E  +   FD I+LD+ +  I GFE
Sbjct: 4   KILIVEDDIHISNIIKMNLNIVNYATTEVYDGLAALEAIERETFDLILLDVMIPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  ++  +I  PV  L+  +S+ DKV GL+ GADDY+ KPF   EL+ARI  ++RR  G
Sbjct: 64  LMSKIQRHRI--PVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRY-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S++   D+ VN+D + V +    + LT KEY ++ +L   KN  L++E FL+ ++ G
Sbjct: 121 KEESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWGG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +D+ I  LRKKL         I+T++  GY L +
Sbjct: 181 DYFGETRTVDMHIKSLRKKLHLQEN----IKTIYKIGYRLED 218


>gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ,
           regulates gene expression at low [Mg+] (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L H + + L+     V   +  ++     K    D  I+DLGL    G 
Sbjct: 1   MRILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGLPGEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +++ P+ IL+   S ++KV  L +GADDY++KPF  EE+ ARI+A++RR  
Sbjct: 61  SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+      ++L  K   V  + I LT  EY +IE L       ++KE  +  LY 
Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKK+SN    +  I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKISNEWSDE-VIVTVRGQGY 218


>gi|255527459|ref|ZP_05394330.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186052|ref|ZP_06854457.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508839|gb|EET85208.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049320|gb|EFG88749.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 137/229 (59%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I  +L+++ +NV     G + +   +  ++  I+LDL +  I G E
Sbjct: 6   KILVVEDENDINKLICSILENKGYNVIPAFSGTEALMRVENEKWHMILLDLMIPGIDGEE 65

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           V+  L++ +I+  P+ ++S  +S + K+  L+ GADD+I KPF+ +E+VAR+++ +RR  
Sbjct: 66  VI--LKIREITKAPIIVVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVKSNLRRYL 123

Query: 119 --SRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             S G     +++V  D+S+N+++K V+V    I LT +E+ ++ELL    +   +K   
Sbjct: 124 EFSTGGEKKNNILVYKDISLNIESKEVKVGQTLITLTAREFDILELLLKNPSKVYSKSNI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++     E   I+V + +LR KL NA  GK+YIETVWG GY LR+
Sbjct: 184 FESIWEEEFLGEYNTINVHVSRLRTKLCNAGDGKDYIETVWGMGYRLRK 232


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS R
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  ++    +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237


>gi|83745711|ref|ZP_00942769.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
 gi|83727788|gb|EAP74908.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
          Length = 288

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++                  FD 
Sbjct: 43  MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 101

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +E
Sbjct: 102 MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 161

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R   
Sbjct: 162 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGK 221

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+      
Sbjct: 222 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 276

Query: 228 ETCE 231
              E
Sbjct: 277 PPAE 280


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++ED++A+   + + LK   + V     GE  ++L + +  E    +LD+ L  I GF
Sbjct: 5   ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR    +  + +L+  +   DKV GL  GADDY++KPF+  ELVAR+ A+ RR  
Sbjct: 65  AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A     ++ IV+GD  +N  ++T   +G  I LT  EYQ+++      +T L++   L
Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           NH++      E+KI+DV I +LR K+        +I TVWG GY
Sbjct: 185 NHVWGEDYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGY 228


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESMR 229


>gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +++  +  L+ E + VY +  G   +EL    EF  IILDL L DI G E
Sbjct: 3   KVLIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K    + +++  S++ED++ GL +GAD+Y+ KPF+  ELVAR+ ++ RR   
Sbjct: 63  ICKIIR-DKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGA 121

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  S++    G++ +  D++ ++V+G  I LT  E+ ++ +L++ K   LT+E  ++ ++
Sbjct: 122 NNISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVF 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + +DV I  +RKK+   +    YI TV   GY
Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGY 221


>gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212]
 gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 129/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V V   G +  E  K   +D ++LD+ +    G E
Sbjct: 3   KVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGK 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+     +++    + V LD++ V V G  ++LT KE+ ++ELL    N   ++   L+
Sbjct: 122 KAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+ +  G   YI T WG GY  +
Sbjct: 182 TIWGSTYPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYFK 227


>gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQILD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     GD S    A T+EV G R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228


>gi|33594405|ref|NP_882049.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33597124|ref|NP_884767.1| response regulator protein [Bordetella parapertussis 12822]
 gi|33600968|ref|NP_888528.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|5777378|emb|CAB53386.1| transcriptional regulatory protein, putative [Bordetella pertussis]
 gi|33564480|emb|CAE43793.1| response regulator protein [Bordetella pertussis Tohama I]
 gi|33566575|emb|CAE37832.1| response regulator protein [Bordetella parapertussis]
 gi|33575403|emb|CAE32480.1| response regulator protein [Bordetella bronchiseptica RB50]
 gi|332383816|gb|AEE68663.1| response regulator protein [Bordetella pertussis CS]
          Length = 223

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L H+++  L  + + V     G+  +       +D ++LDL L  + G 
Sbjct: 1   MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+    ++D+V GL +GADDY++KPF+  EL AR+RA+ RR  
Sbjct: 61  DVLRQLRQDGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ  I  G L  +   + V   G R+ L+ +E  ++E+L  R    +TK   +N L  
Sbjct: 121 GQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V++ +LRK+L    G    I+TV G GY+L
Sbjct: 181 WDADFSENAVEVYVYRLRKRLE---GSGASIQTVRGFGYML 218


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + ++  + ++ D  +LD+ L D+ GF 
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R LR A    PV  L+     EDK+ GL  G DDY++KPF+ +E+VARIRA++RR  S
Sbjct: 69  VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++   DL ++ DA  V   G  + L+  E++++  L +  N  L+K   L+H++
Sbjct: 129 LDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+ +  G +  I T  G GY+LR   K
Sbjct: 189 EYDFNGDASIVESYISYLRRKI-DVGGREKMIHTKRGVGYMLRTADK 234


>gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 232

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     GD S    A T+EV G R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228


>gi|145594141|ref|YP_001158438.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303478|gb|ABP54060.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 219

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L++E F V V   G  G++  +  ++DA++LD+ L  + G+
Sbjct: 1   MRLLVVEDEARLAAALHRGLQAEGFVVDVASTGPAGLDAARHGDYDAMVLDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  +   PV +LS      D+  GL  GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  EVVRRLRAERRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++   + V   G  + LT +EY +++ L  R  T ++K   L+H++D
Sbjct: 121 PERPAVLTVGDLRLDPARRRVTRDGAEVALTAREYALLDYLMRRPGTVVSKIELLDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V++  LR+KL     G++ +ETV G GY L
Sbjct: 181 ANIETAPNAVEVYVGYLRRKL-----GRDRLETVRGAGYRL 216


>gi|87121223|ref|ZP_01077113.1| two-component system regulatory protein [Marinomonas sp. MED121]
 gi|86163380|gb|EAQ64655.1| two-component system regulatory protein [Marinomonas sp. MED121]
          Length = 221

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED + L  +I   L S      +   GE   E+ K+   D IILDL L  + G 
Sbjct: 1   MRVLVVEDTQVLGQAICDRLASLGHGADLVTNGEQANEILKYQTLDLIILDLNLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV IL+    ++D+V  L +GADDY++KPFN  EL AR RA++RR  
Sbjct: 61  QILKQLRARANETPVLILTARDQMDDRVILLDAGADDYLTKPFNFRELEARCRALLRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A ++   G+L++N DA+ V V+G    +T +E++++E+        L+K+    HL++
Sbjct: 121 GYAANVTEHGNLTINRDARQVMVKGEIQSITNREFRLLEIFLGHLGRVLSKDEITEHLFN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + P    I++++ +LRKKL +++     I T+ G GYV
Sbjct: 181 FDETPGPNAIELYVGRLRKKLVDSS---LTISTLRGLGYV 217


>gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357]
          Length = 219

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii]
          Length = 222

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 118/200 (59%), Gaps = 8/200 (4%)

Query: 28  YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           Y+ D    GE      K   F+ IILDLGL  + G   L+A+R     TPV IL+   S+
Sbjct: 25  YIVDWLKDGEAARAAVKSESFELIILDLGLPRLSGLAFLQAIRHDDNRTPVIILTARESV 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           ED+V+GL +GADDY++KPF+  EL AR+RA+VRRS+G A +++   +++++  A +V V 
Sbjct: 85  EDRVKGLDAGADDYMTKPFDLNELSARVRALVRRSQGRADAVLQYRNITLDPAAHSVYVD 144

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
              +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V I  LRKKL+  
Sbjct: 145 DVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEVHIHNLRKKLN-- 202

Query: 205 AGGKNYIETVWGRGYVLREN 224
               N+I T+ G GY++ +N
Sbjct: 203 ---ANFIRTIRGVGYMVEKN 219


>gi|113869661|ref|YP_728150.1| response regulator [Ralstonia eutropha H16]
 gi|113528437|emb|CAJ94782.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+ED+  LA  +   L+   F + +V D G       +  E+DA++LDL L    G
Sbjct: 1   MRILLVEDEIELARWVARALEQGGFVIEHVAD-GLQAEARLQAEEYDAVLLDLRLPGKDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+++R     TPV IL+   +++++VRGL  GADDY+ KPF   EL AR+ A++RRS
Sbjct: 60  LAVLKSMRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARLLALIRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG A   +  G L  + + ++  + G  + LT +E  ++  L  R    LTK   L+ ++
Sbjct: 120 RGRAHPRLQCGTLVFDGETRSFTLDGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +     I+V + +LRKKL   AG    I T+ G GY+L   A
Sbjct: 180 SLDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLLEPEA 222


>gi|325528239|gb|EGD05411.1| two-component regulatory system response regulator protein
           [Burkholderia sp. TJI49]
          Length = 231

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL  RE+   E
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEAREDGDTE 228


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       +Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 VSVDSQESDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|312962223|ref|ZP_07776715.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311283560|gb|EFQ62149.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 226

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++ F V           + K   FD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLGAQGFTVERVATAAAARAMLKAATFDIMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR   +  PV IL+   S+ ++V GLQ+GADDY+ KPF+  EL AR++ ++RR  
Sbjct: 61  KLLQQLRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRMA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G LS +  ++   + G  + L+ +E  +++ L   K   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLSYDPSSRETLLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 80  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       +Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 139 VSVDSQESDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 198 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD+ LA      L+     V +   G +G+     + +D ++LDL L    G 
Sbjct: 13  IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  +   P+ +++      D+V GL++GADDY+ KP++  EL+ARIRA VRR+R
Sbjct: 73  EVCRELRT-RSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 131

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+A    Q L V G L ++  + T  + G  + LT  E+ ++ +L+ R    L++E  L+
Sbjct: 132 GNAGPSLQPLNV-GRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLD 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +    DE   + IDV I +LR+KL         ++TV G GY+L
Sbjct: 191 LIKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQKIR-NKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L ++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K    +   N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227


>gi|217979526|ref|YP_002363673.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504902|gb|ACK52311.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A +IE  L++  +        EDG E  +  +   II D  L  +    +
Sbjct: 15  ILIVEDESFVAKAIEDELRANGYESVAVSTAEDGFEAARALDPMLIIADRMLAGVDSLSI 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR      PV  +SG++++++++R L++G DDY++KPF   EL AR+ A++RRS+  
Sbjct: 75  IERLRRDDAHLPVLFVSGLTAVDERIRALKAGGDDYLTKPFALGELAARVDALLRRSQSA 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +V G L ++  ++  +     I L   E++++E +      TL++ M L  ++  R
Sbjct: 135 QDTALVVGPLMLDRISRMAQRGARAIALLPAEFKLLEYMMRHAGQTLSRAMLLEDVWGYR 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P   +IDV I KLR+K+ +AAG    I +V G G+ L+
Sbjct: 195 SLPNTNLIDVHIGKLRRKI-DAAGETPLIHSVRGAGFTLQ 233


>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 229

 Score =  125 bits (313), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +  TPV  L+    ++D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  SVLRELRRER-DTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV I +LR K+ +    K  I T  G GYVL
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKVDDPFDHK-LIHTRRGMGYVL 219


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + S PV +L+   +  DKV GL+ GADDY++KP++  ELVAR+RA++RR +G
Sbjct: 63  VCRQLR-QRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + LI +    G + ++++   V V G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 EPEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGY 222


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+I+D+  + H IE+ L +  F  +  + G +   + +    D +ILD+ +    GF
Sbjct: 2   LNILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R  K + P+  LS      DKV+ LQ G DDYI KPF+  EL+AR+ A++RR+ 
Sbjct: 62  EVCSRIR-GKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTG 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +  I  G ++++  A+ V V G ++ LT KEY+++      KN  L++E  L ++
Sbjct: 121 GLKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +       ++ +D  I  LR KL    G  +YI+TVWG GY
Sbjct: 181 WGIDYTGSLRTVDTHIKTLRMKL----GVGDYIQTVWGVGY 217


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D I+LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR A+ + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLR-ARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + + +  G + ++++   V V G+++ L  KE++++E+        LT+   ++ +
Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGY 222


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G++  E+ +      +ILD+ + ++ G EV
Sbjct: 4   ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++ I+RR +  
Sbjct: 64  CKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRIQNI 123

Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A S +     + G + ++ D   V V    +HLT  E+ ++ LL+       + E    
Sbjct: 124 QANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEYIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +     K + V I  LR KL  A  G+N I+T+WG GY
Sbjct: 184 KIWQEKALGASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGY 226


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+ +  + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLR 222
                +  I++ +I  LRKK+ +       G  +     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMIR 239


>gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 227

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56
           MRIL++EDD     + + M+K+     ++ D   DG+    + C+   +D +I+D  L  
Sbjct: 1   MRILIVEDD---PEASQYMVKAFREAGHLADHAGDGLAGYQKACE-ENYDVLIVDRMLPK 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G  ++  LR  KI TPV ILS +  ++D+V+GL+SG DDY+ KP+   EL+AR+ A+ 
Sbjct: 57  LDGLSLIGGLRAQKIETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALA 116

Query: 117 RR-SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR   G A+  I   G L ++  A  +   G  I L  +E++++E L       +T+ M 
Sbjct: 117 RRKPPGTAEETIYRIGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTML 176

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L H++D   +P+  +IDV I +LR K+         ++T+ G GY++R++
Sbjct: 177 LEHVWDYHFDPQTNVIDVHISRLRSKIDKGF-DPPLLQTIRGIGYMIRDS 225


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGY 227


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 131/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 ---HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              H+   +V       GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR  A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPEAE 235


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   + V   + G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       +S +   DL ++ D + V   G  I LT  E+ +++LL       L++  
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++ G D P     ++V+I  LRKK +   G    I TV G GYVLRE+
Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKK-TEGEGDARLIHTVRGVGYVLRES 230


>gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24]
 gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +      G  ++++  G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 120 TAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRSKLHMPA----LIETVRGVGYRL 223


>gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22]
 gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22]
          Length = 225

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E + V  +  G++G+ L     +D I+LD+ L    G 
Sbjct: 4   MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIKDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++LR + I TP+ +L+   SIEDK++GL  GA+DY++KPF+  EL+ARIR  +R + 
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRIT- 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L  KT       I LT KE+ ++E L   KN  L++      L  
Sbjct: 123 TTTQTKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D     I++V+I +LR K+      K  I+TV G G+ + E+
Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225


>gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE     ++V +  LR+KL     G ++I TV G GY L +
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLSD 218


>gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 270

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       +    + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  IE  L++  F+  V + G  G+   +    D ++LDL L DI G E
Sbjct: 3   RILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHE 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VLR L+      + PV I+S      D+++GL+ GADDY+ KPF+  EL+ R++A++RR+
Sbjct: 63  VLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRA 122

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G++ ++     V V+G  + LT  E++++  L  R     T+E+ L+ 
Sbjct: 123 DADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSD 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  + E   + +D  I +LR+KL  A    + IETV G GY L
Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKL 223


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 19/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  LA +I   L+   ++V     G   ++  +    D I+LD+ L  + G E
Sbjct: 4   KILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMDGLE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      +TP+ +L+      DKV GL+ GADDY++KPF + EL+AR+RA++RRS
Sbjct: 64  VCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRRS 123

Query: 120 -----------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                            R  A   +V G L ++L  + V  +G  I L  K+++++  L 
Sbjct: 124 DYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYLV 183

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + T LT++  L++++      + + +DV +  LR+KL         I+TV G GYV R
Sbjct: 184 RNRGTVLTRDQLLHNVWGYDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYVFR 243


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  ++  L+ E ++V V   GED +   +    D +++D  L  + G EV
Sbjct: 5   VLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  +   + P+ +L+      D+VRGL +GADDY+ KPF+  EL ARIRA++RR R
Sbjct: 65  CRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +I  GD++++  A  V+     IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV + +LRK L+N    ++ I TV   GY    NA
Sbjct: 185 GSDVYVEARTVDVHVGRLRKALNNKE-ERDPIRTVRSAGYAFDVNA 229


>gi|319944908|ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599]
 gi|319741478|gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599]
          Length = 221

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  + +++   L   ++       G   +   +   +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR++R    + PV I++   +++D++ GL +GADDYI KPF   EL+AR+RA++RR  
Sbjct: 61  EVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  ++ +  L+++        QG   + L+ +E+ ++  L  R    L++    + +Y
Sbjct: 121 GQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E E   I+  I  LRKKL     G   I  + G G+++ + A
Sbjct: 181 GWGQEVESNAIEYLIHSLRKKL-----GSEAIRNIRGAGWMVSKQA 221


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S    Q  +L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGY 228


>gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 251

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R +++ED+ ALA+ I   L+ + F   +T  G + I L +  + D ++LDLGL  + G 
Sbjct: 24  LRAMVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGLPSLDGV 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    +  V +L+  +   D + GL  GADDY++KPF   EL+ARI+A++RR R
Sbjct: 84  EVCRQLRTFSDAY-VVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPR 142

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++ +   GDLS++++ + V V G  + LT  E+ ++  LS      +T+   + 
Sbjct: 143 TTDTARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIG 202

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +  ++DV I  LR+KL + A    Y+ TV G GY
Sbjct: 203 AVWGPNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGY 245


>gi|124005018|ref|ZP_01689861.1| two-component system response regulator [Microscilla marina ATCC
           23134]
 gi|123989696|gb|EAY29242.1| two-component system response regulator [Microscilla marina ATCC
           23134]
          Length = 225

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  ++   LK+E +        E   E    Y++D +ILD+GL D  G 
Sbjct: 1   MKILIVEDEQQLTAALVSYLKNEGYVCESVLNFEQATEKVHLYDYDIVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ L+  +    V I+S  +S++DK+ GL  GADDYI+KPF+  EL ARI++I+RR  
Sbjct: 61  DLLKLLKKLRSQAGVLIISAKNSLDDKLAGLDLGADDYITKPFHLAELNARIKSILRRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                 ++  ++ VN D     V G  + LT KE +++      KN  LTKE    HL+ 
Sbjct: 121 FEGNHEVIFQEIRVNTDKFETLVNGQLVVLTQKEQELLLYFISNKNRVLTKESIAEHLWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D  +    I   I  LR+K++   GGKNY++TV+G GY
Sbjct: 181 DHMDMADSFDFIYTHIKNLRRKIAQ-KGGKNYLQTVYGIGY 220


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 4   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+ARIRA++RR++ 
Sbjct: 64  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+    G   Y+ TV G GY
Sbjct: 183 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGY 228


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 133/236 (56%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L+ E + V V   GE  ++  +    D +ILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR  +
Sbjct: 64  VAREIR-KKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             HAQ        I  GDL+++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+ 
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYLRNPDSDQA 238


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 16/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           RIL+++DD+ +A  I L L  E +   +   GE    L  F EF    I+LDL L  I G
Sbjct: 6   RILIVDDDENIAELISLYLMKECYETKIVGDGESA--LADFDEFKPHLILLDLMLPGIDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R AK  TP+ +LS    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR 
Sbjct: 64  YQVCREIR-AKSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRY 122

Query: 120 RGHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                S+         +   DL VN+    V   G  + +  KE +++  LS   N   T
Sbjct: 123 HSSNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L++++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 183 REQLLDNIWGYEYIGDTRTVDVHIKRLREKIHDNQFWS--ISTVWGIGY 229


>gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 223

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A ++   L      V     G  G+   +  E+D  ++D  +  + G 
Sbjct: 1   MKILVVEDDAEAAQAMVRGLTEGGHTVSHAIDGAYGLLEAQKGEYDVYVVDRMMPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV  LS M  +ED+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  GMVETLRKDGDQTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV      I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221


>gi|209516224|ref|ZP_03265082.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503335|gb|EEA03333.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 232

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIEDD  +   + + L+ E   V   + G DGI +      D +I+DLGL DI G +V
Sbjct: 8   VVLIEDDSHICRYVRMSLQEEAMRVLDVNTGRDGIAMTASARPDLVIVDLGLPDIDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR      P+ +LSG +  E+KV  L +GADDY++KPF+  EL ARIRA++RR    
Sbjct: 68  IQQLR-GWSDVPIIVLSGRTRDEEKVAALNAGADDYLTKPFSIAELEARIRALLRRQNRC 126

Query: 123 --AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+S  V+ G ++V+L A++V+     +HLT  EY+++  L  R    +T    L  ++
Sbjct: 127 VIAESAKVSFGSITVDLVARSVQCDYQAVHLTPIEYRLLVALVRRAGCVVTHHQLLQEVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPSHAENAHYLRIYMGHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A +L + G LS++   +     G  I LT +E+ ++   +       ++   
Sbjct: 126 LAKDSRIEAGNLRIAG-LSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  + + L+ E + V     G  G    +   +DA++LDL L  I G E
Sbjct: 6   RVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  RV    TP+ I+S  S+   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L +   A+ V V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + +     ++  I +LR K+         I TVWGRGY L
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKL 231


>gi|160879819|ref|YP_001558787.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428485|gb|ABX42048.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 219

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED++A+   I L L  E +       GE+   L + Y +D I+LD+ L  I G+
Sbjct: 2   LNILIVEDEQAINELIYLNLSDEGYRCTRAYDGEEAANLIENYNYDLILLDIMLPKINGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+     +  + TPV  ++  S I D++RGL+ GADDYISKPF   EL+AR+ A++RR  
Sbjct: 62  ELFDY--IHPLGTPVIFITAKSDINDRIRGLRLGADDYISKPFQVGELLARVEAVIRRF- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  I    ++++L+++ V   G  I LT KE++++  L   KN  L +      +++
Sbjct: 119 GKSERKIELYGVTIDLNSREVRKDGQLIELTVKEFELLIQLIQNKNVALRRSWLYERVWE 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    E + +D  I +LRKKL      ++ I+TV+  GY L
Sbjct: 179 GEFTGETRTLDTHIQRLRKKLE----WEDRIKTVFRIGYRL 215


>gi|73749211|ref|YP_308450.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660927|emb|CAI83534.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 223

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  LA  I   L+   + V     G+ G E+   Y FD IILD+ L +I GF
Sbjct: 1   MKLLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIILDIMLPEINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R     TPV +L+     +D+VRGL  GADDY+ KPF+  EL+AR+RA++RR+ 
Sbjct: 61  SVCKKIRTEGNQTPVIMLTARYQEDDRVRGLDCGADDYLVKPFSFPELLARLRALLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I    L++N   + V      I  T KEY ++E L L KN  +TK M   H+++
Sbjct: 121 NQHSPSIKLRKLTLNTVDRRVFYDDKEIEFTAKEYGILEYLVLNKNCIITKNMIEEHIWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +I+V I ++RKKL N     + I+TV G GY++ +
Sbjct: 181 SESDIFSNVIEVLISRIRKKLDN-NNKNSLIKTVKGLGYIIED 222


>gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila
           ATCC 19061]
 gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila
           ATCC 19061]
          Length = 221

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L+H ++  L +  F   V DL EDGI   +L +   +  +ILD+ L  +
Sbjct: 1   MRLLLVEDHPDLSHWLQKALSTSGF---VVDLAEDGIMADQLLQTESYALLILDVALPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+  S + D+V+GL SGADDY++KPF+ +EL ARIRA++R
Sbjct: 58  DGISLLLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G +Q  +  G L V  D     +    + LT +E  ++  L LR+   ++K+     
Sbjct: 118 RGSGISQENLKFGSL-VYEDDGYFLLNNVPLALTPRELSVLTTLFLRRGRPVSKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   D+   + I++++ +LRKKL N+  G   I T+ G GY L
Sbjct: 177 VFSLSDDANPQSIELYVHRLRKKLLNSDVG---IGTLRGLGYRL 217


>gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 229

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 128/222 (57%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +  +IE+ LK++N+NV     G D +EL +  + D  ++D+ +  + G E+
Sbjct: 4   IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNKIDLFLVDIMMEGMDGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + +R    + P+ ILS  S + DKV GL  GADDYI+KPF+  EL+ARI++ +RR   S
Sbjct: 64  TQKIREVS-NAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLRRLELS 122

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + ++   ++   G L++N D K V + G  I LT  EY +I LL   K    T E    +
Sbjct: 123 KDNSLNGNVFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFTSEEIYEN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++       KI+ V I +LR+K+       + I++V+G GY
Sbjct: 183 VWEAPPYDVKKIVSVHISRLREKVEINPRRPDLIKSVYGMGY 224


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  + + + + L  E F V     G + +E+   + FD I+LDL L D+ G+
Sbjct: 14  LQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGW 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R  K    + +L+  S  +DKV GL  GADDY++KPF  EEL+AR+ +++RRS 
Sbjct: 74  QVCKKIR-EKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSA 132

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ +    L +  + + V +  H +  T KE+ +   L+  +    ++E  +
Sbjct: 133 ITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELV 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++    E EV+++D  I  +R+K   A  G N I+TVWG GY
Sbjct: 193 NLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGY 236


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G     L      D I+LD+ L D+ GF 
Sbjct: 29  RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+  
Sbjct: 89  VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMD 148

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                I+   DL ++ DA  V   G  + L+  E++++  L + +   ++K   L+H+++
Sbjct: 149 SVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++ +I  LR+KL+     K+ I T  G GY+LR
Sbjct: 209 YDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYMLR 250


>gi|206563270|ref|YP_002234033.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198039310|emb|CAR55275.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 231

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL  RE+   E
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVLEAREDGDAE 228


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+A+   + L L+ +   V     GEDG+E  + +  DA++LDL L  + G E
Sbjct: 3   RVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    P+ + +      D V GL++GADDY+ KP     L ARIRA++RR  G
Sbjct: 63  VCRRIR-AHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGG 121

Query: 122 HA--QSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A  Q    T   GDL ++    TV  QG  + L   E +++  LS       +++  L 
Sbjct: 122 TADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     + +++D  + +LR K+  + G   Y+ TV G GY
Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGY 224


>gi|319901144|ref|YP_004160872.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319416175|gb|ADV43286.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 230

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  ++  I   L+  +  V  TD G +   +    ++D I+LD+ L  I G 
Sbjct: 1   MLILLIEDNARISEFIVRGLEENDHAVIWTDNGIEARNMITQRKWDLILLDIMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R  K++ P+ ++S +S   D+++ L  GAD+Y++KPF   EL+A I A+ RR++
Sbjct: 61  ELLQYTRRKKVNAPILVISALSETNDRIKALDYGADNYLTKPFLFRELIAHINALTRRAK 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++   DL +N+D   +E  G  I LT +E++++++L   KN  +T+   L++
Sbjct: 121 LNYNEDMNILECNDLRLNIDKHQIERAGKEIRLTIQEFKLLKILMENKNRVVTRTELLDN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    +    ++DV+I  LR K+ +A      I+T+ GRGY++++ +
Sbjct: 181 VWGINCDNTTNVVDVYISYLRNKI-DAEHDIKLIKTIKGRGYLIQDTS 227


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L+ E F V V   G + + + +    D I+LDL L  + G E
Sbjct: 3   RILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  + + PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQVR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + +   I  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGY 222


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G +G++     ++D +ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  +I    L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A+A  + L L  + F V++   G+ G+   +       +LD+ L  +PG E+
Sbjct: 11  VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  L+      D++ GL+ GADDY++KPF+  ELVAR+RA++RR  G 
Sbjct: 71  CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130

Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 + G ++++ D +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 131 PPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + +DV + ++R KL    G ++ I T  G GY +
Sbjct: 191 AVPAGTRTVDVHVAQVRAKL----GPESVIRTHRGVGYAV 226


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E + VY    GE+ +   +    D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A      S I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR+  ++
Sbjct: 183 TVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRQTEQE 233


>gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 229

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L S+ + +      +  IEL +  + D ++LDLGL  + G 
Sbjct: 6   VRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+LR  R   +  PV ILS  +     V  L+ GADDY++KPF   ELVARIR  +R   
Sbjct: 66  ELLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +  +GDLSV+L  + V+V+G  I L+ KEY ++ +L       LT    L  +
Sbjct: 126 QQQGEKPVFQSGDLSVDLVKRIVKVEGKEIKLSPKEYDILRILVQHAGKVLTHHFILKQI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D  D  +V+ + V++ +LR+K+        YI T  G GY LR
Sbjct: 186 WD--DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLR 227


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I+ G L+++L+++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +   +   I K+R K    +   N+I TVWG GY
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGY 222


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ALA  ++  L  E + V V   G +G+   +    D IILD  L  + G E
Sbjct: 9   QILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLSGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +    P+ +L+    + D+V GL SGA+DYI KPF+ EE +AR+R  +R  + 
Sbjct: 69  ICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQE 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   DLS++   + V      I LT KEY ++E L       LT+   L  ++  
Sbjct: 129 PNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWGY 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V++  LR KL  + G    I+TV   GYVLRE
Sbjct: 189 DFMGDSNIIEVYVRYLRIKLE-SEGESRLIQTVRSVGYVLRE 229


>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
 gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
          Length = 234

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A+ I+  L  EN++V  +  G++G+E  K   +D IILD+ L +I GF 
Sbjct: 4   KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R +G
Sbjct: 64  VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + +    T D         L++  D   V +    I LT KE+ ++ +L+  ++   TK+
Sbjct: 123 YNKK---TDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKK 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++++  +      I V +  LR+KL +      YI+TVWG GY
Sbjct: 180 ELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGY 226


>gi|90411269|ref|ZP_01219281.1| DNA-binding response regulator ColR, putative [Photobacterium
           profundum 3TCK]
 gi|90327798|gb|EAS44129.1| DNA-binding response regulator ColR, putative [Photobacterium
           profundum 3TCK]
          Length = 222

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD+ LA ++  +++ EN        G  G+ L +   +D +++D+GL  + G  
Sbjct: 3   RVLLIEDDRDLAETLLQLMEFENMVPDYASNGVAGLTLAQSNRYDILVIDIGLPKMNGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR     TP+  L+   SI+DK+ G  SG DDY+SKPF+  EL+ARI  +  R R 
Sbjct: 63  LCEQLRQEGCQTPILFLTARGSIDDKLAGFASGGDDYLSKPFDNRELLARIMVLSGR-RS 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               LI   DLS++  A  V    H + LT   + ++ELL       +++E   + L+ G
Sbjct: 122 SQTPLIKVADLSLDNSAYQVFRGEHHVKLTPASFTILELLMRASPKVISREELEDALW-G 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D P    +   I  LR+ L    G K  + TV G+G+V++E+
Sbjct: 181 EDAPNSNTLKAHIYYLRRSLEQVPGPK-LLHTVPGKGWVIKED 222


>gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 224

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL+IED+  L H + + L+     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRILVIEDNALLRHHLSVQLREMGHQV---DAAEDAKEADYFLHEHAPDIAIVDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V    I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   +DV + +LRKKL  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTVDVLMGRLRKKL-QAEHPVDVITTVRGQGY 218


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD ALA  + ++L+SE F   +V D GE  +   +    D ++LDL L  + G 
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFVPSFVAD-GERALAAFRDNRPDIVLLDLMLPGMSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+R  +   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR  
Sbjct: 63  DVARAIR-GESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGE 121

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A  ++  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L 
Sbjct: 122 DVAPEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R   + ++++V + +LR K+         I TV G GY
Sbjct: 182 QVWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGY 224


>gi|160896382|ref|YP_001561964.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361966|gb|ABX33579.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 253

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 126/232 (54%), Gaps = 16/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  ++  L+   + V V     +     +   FDA++LDLGL D  G 
Sbjct: 22  MRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGS 81

Query: 61  EVLR-----------ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           E+LR           +  +   +TPV IL+    + +++ GL  GADDY+ KPF+ +EL 
Sbjct: 82  EILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELE 141

Query: 110 ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           AR+RA++RR+ G A  +I  G+L V+  A+TV   G  + ++ +E+ ++ +L   +   L
Sbjct: 142 ARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVL 201

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++    HLY      E   ++V I  LRKKL NA+     I T+ G GY L
Sbjct: 202 SRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNAS-----IVTMRGVGYFL 248


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  +   +   L  E ++V V + G + +        D ++LD+ + D+ G 
Sbjct: 3   LRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R A  + P+ +L+   ++ D+V+GL  GADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 63  EVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGA 122

Query: 119 -SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++G     ++   DL ++   +       +I LT KEY+++ L        LT++  + 
Sbjct: 123 PAQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E  +++V++  LR KL  A G    I+TV G GYVL+E
Sbjct: 183 KVWGYDYSGESNVLEVYVAYLRNKL-EAGGEPRLIQTVRGVGYVLKE 228


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 20  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 80  PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139

Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI T    D+++N     V V+G  + L+ KE++++EL         ++
Sbjct: 140 LLRRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGY 247


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ TV G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|215486384|ref|YP_002328815.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312966386|ref|ZP_07780608.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
 gi|215264456|emb|CAS08819.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288839|gb|EFR16737.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75]
          Length = 223

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQDVITTVRGQGYLF 220


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+    G   Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGY 227


>gi|42524753|ref|NP_970133.1| two component response regulator [Bdellovibrio bacteriovorus HD100]
 gi|39576963|emb|CAE78192.1| two component response regulator [Bdellovibrio bacteriovorus HD100]
          Length = 224

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  +A  ++  L     +V V   G    E  +   +D I+LDL L ++ G+
Sbjct: 1   MRCLVVEDDNEIATIVKQGLGELEGDVDVESNGRRAFEKAQTNHYDIIVLDLMLPEMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              ++LR  +I+TP+ ILS +  ++D+++GL  G DDY++KPF   EL  R++ +++RS+
Sbjct: 61  TFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLLKRSQ 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + +V  DL +N   + V   G ++ L  +E+ +++L     N  + K+  L  ++
Sbjct: 121 KASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTILKEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  ++DV +C+LR KL      +  I TV G GYVL+
Sbjct: 181 NYDFDPQTNVVDVLVCRLRNKLEKDFPTR-LIYTVRGVGYVLK 222


>gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
 gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
          Length = 233

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L++ N+   +   GE  I     +  D I+LDLGL DI G E+
Sbjct: 7   ILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPDIDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R +  + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR    
Sbjct: 67  IKKVR-SWSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTLRRLSYI 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  H+ + +  G L ++  A    +    +HLT  EY+++ +LS      LT     +
Sbjct: 126 ENTNVHSSTFL-NGGLKIDYSAGCAYLNDEELHLTPIEYKLLCVLSKNMGKVLTHTYITH 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 EIWGSSWESDVASLRVFMATLRKKIEKEPSSPQYIQTHVGVGY 227


>gi|90410002|ref|ZP_01218019.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
 gi|90329355|gb|EAS45612.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
          Length = 225

 Score =  124 bits (312), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      I   L+   F V   D G  G+ +    E+  +ILD  L  + G 
Sbjct: 1   MKILVIEDDLTTREFIAKGLREHGFVVDEADDGHKGLMMATSCEYQLVILDRMLPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR + +V+R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRH- 119

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H+ + IVT     DL +++ +  V      ++L  KE+ +++ L       +++     
Sbjct: 120 -HSSTKIVTEYVYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLLEHAENVVSRMSLFE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    +P+  +IDV I  LRKKL    G  + I T+ G GYVLR +
Sbjct: 179 SVWSYHFDPKTNVIDVHIANLRKKLEE-NGELSLIHTIRGAGYVLRRS 225


>gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
 gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
          Length = 232

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FN+ V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQVLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G ++ +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGLSWFKTLRGRGYLM 228


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 226

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++L+EDD A+A  +   L  E ++V   D G     L +    D  ILDLGL D+ G +V
Sbjct: 4   VILVEDDSAIAEPLARALSREGYDVRSHDTG--AAALTEVEAADLFILDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R +R    +TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  ARHVRKLGKTTPILILTARADEIDMVVGLDAGADDYVTKPFRLAELLARVRALLRRIGSE 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V  D+ V++ A    V    + LT KE+ ++ +L       + +++ +  ++  
Sbjct: 122 EPEEDLVAQDVRVSVTAHRAFVNERELQLTAKEFDLLRVLVREAGNVVERDLLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ +  LR+KL + A   +YI TV G G+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDAAHPHYITTVRGMGF 219


>gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 228

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + + + L  ENF+V   + G+D I+L +    D I+LDL L D+ GF
Sbjct: 1   MKILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I DK+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    + +I  G + + L  + V +    ++ T  E++++ L+        T+E
Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++        + +D+ I ++RKKL N       I+T++G GY
Sbjct: 181 ELLDKIWGYDFSGNTRAVDIHIKRIRKKLLNHEEA---IKTIYGVGY 224


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L  +   +DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V+G  + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKLVDPA 235


>gi|171056968|ref|YP_001789317.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774413|gb|ACB32552.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 235

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/239 (35%), Positives = 128/239 (53%), Gaps = 22/239 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGL----- 54
           MR+LL+EDD  +  S+   L+ E   V +V D+      L     FD ++LDLGL     
Sbjct: 1   MRLLLVEDDPMIGSSLRAALRLEGMAVDWVRDVAAAQATLAS-ERFDLVLLDLGLPPGRA 59

Query: 55  --------TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106
                   TD  G  +LR+LR  + STPV +L+      D+VRGL +GADDY+ KPF  +
Sbjct: 60  ASNLTEPGTD--GLSLLRSLRSREDSTPVIVLTARDGPGDRVRGLDAGADDYLVKPFELD 117

Query: 107 ELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
           EL ARIRA++RR  G AQS++    ++++   + V   G  + L+ +E  ++E L  R  
Sbjct: 118 ELAARIRAVMRRHSGRAQSVLSHRGVTLDPATRQVTRDGQPVLLSAREIAVLEALMTRPG 177

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             LT+    + LY   +E E   + V+I +LR+KL     G  +I T+ G GY L ++ 
Sbjct: 178 AMLTRAQLEDRLYGWGEEIESNAVSVYIYQLRRKL-----GPGFIRTMRGLGYSLADDG 231


>gi|164688154|ref|ZP_02212182.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM
           16795]
 gi|164602567|gb|EDQ96032.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM
           16795]
          Length = 223

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L  SI   L + +F       GE+ + + +   +D I+LDL L ++ G 
Sbjct: 1   MKVLVVEDNIKLLKSISDELNN-HFETESCSDGEEALYMIEQNIYDLIVLDLMLPNLSGI 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L+ +R   I TPV IL+   S+ DKV   + GA+DY++KPF  EELVARI AI+R + 
Sbjct: 60  EILKCMRDKFIDTPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILRTNG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  A++ I   DL ++L+ + V ++   I L  K++ ++E L L K + L KE   + ++
Sbjct: 120 KMQAKNTIDFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++I++V+I  LRKKLS   G    I+T    GY+ 
Sbjct: 180 GIDSDVTIEIVEVYISHLRKKLS-KYGYDKCIKTKRKVGYMF 220


>gi|126463687|ref|YP_001044801.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105351|gb|ABN78029.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 228

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E + + + V+I +LR KL + A    +I T  G GY  R+ 
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRDR 228


>gi|295101813|emb|CBK99358.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 236

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   LK+  +       GE  I +   +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R++R    + P+ +LS  S   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G    + V G L ++  A  V +  + +HLT  EY+++ +L+      LT       
Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++    E ++  + V++  LRKKL       + I+T  G GY +     DE
Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235


>gi|295402179|ref|ZP_06812137.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111459|ref|YP_003989775.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975770|gb|EFG51390.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216560|gb|ADP75164.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL EDD  L   I  MLK E   V     G+D     K   +D +ILD  +    G 
Sbjct: 1   MYILLAEDDTRLGKLIVYMLKKEKHTVDWVQDGDDAYYFAKHTHYDLLILDWMMPSKEGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +ALR    +  + +L+   ++ED+V GL  GADDY+ KPF   EL ARIRA+ RR  
Sbjct: 61  EVCKALRKDGFNGAILMLTAKDAVEDRVAGLDCGADDYVVKPFEFSELFARIRALSRRIA 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q+  ++ G+LS+NL+  +++    +I LT +E+Q++EL     N  L +E+ +  ++
Sbjct: 121 QPFQAEELSFGNLSLNLNEYSIKKGNKKIQLTNREFQLMELFMRHPNQILPRELIIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +     ID FI  LRKKL +       I+ + G GY L +
Sbjct: 181 GLDADISSNNIDSFIRLLRKKLGDDG---TLIQNIRGVGYKLSD 221


>gi|254386383|ref|ZP_05001689.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194345234|gb|EDX26200.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L  ++++ L++  F V     G   + L      DAI+LDLGL D+ G E
Sbjct: 3   RVLVVEDDPQLVRALKINLQARKFEVLEAGDGAMALRLAAARTPDAILLDLGLPDMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS   + E+K+R L +GADDY++KPF+ +EL+AR+RA  RR   
Sbjct: 63  VIRGVR-GWSHVPILVLSARHTSEEKIRALDAGADDYVTKPFSMDELLARLRAATRRQEA 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A       IVT + +++L A+ V V+G R + LT  E+ ++ELL  +    +++   L 
Sbjct: 122 PASPAGIPGIVTDEFTIDLAARKV-VRGERTVRLTPTEWHLLELLIAKPGHLVSQRRLLL 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V++ +LR+KL        Y+ T  G GY
Sbjct: 181 EVWGPTYSEHTNYLRVYMAQLRRKLEANPSHPRYLITEPGMGY 223


>gi|107026427|ref|YP_623938.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116692385|ref|YP_837918.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735613|ref|YP_001776873.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105895801|gb|ABF78965.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116650385|gb|ABK11025.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169817801|gb|ACA92383.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 231

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL  RE+   E
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFAEK-LLHTIRGMGYVLEAREDGDTE 228


>gi|126699438|ref|YP_001088335.1| two-component response regulator [Clostridium difficile 630]
 gi|254975465|ref|ZP_05271937.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092852|ref|ZP_05322330.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101002|ref|ZP_05329979.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306857|ref|ZP_05351028.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255314595|ref|ZP_05356178.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517269|ref|ZP_05384945.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650375|ref|ZP_05397277.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683489|ref|YP_003214774.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687085|ref|YP_003218218.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520333|ref|ZP_07406680.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115250875|emb|CAJ68700.1| Two-component response regulator KdpE [Clostridium difficile]
 gi|260209652|emb|CBA63348.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213101|emb|CBE04498.1| two-component response regulator [Clostridium difficile R20291]
          Length = 232

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDDK +   I   L +++++V     G++GI +   Y  D ++LDLGL D+ G EV
Sbjct: 6   ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++A+R    + P+ ++S      DKV    +GADDY++KPF+  EL+AR+R   R S+  
Sbjct: 66  IKAIRQFS-NIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVE 124

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           AQ      S      L ++ D + V V    +HLT  EY ++ LL+      LT    + 
Sbjct: 125 AQQKDDVKSTFEVDKLLIDFDKRKVIVDDVEVHLTPIEYNILSLLAKHHGKVLTHNFIIK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E K + VF+  LR+K+        YI T  G GY L +
Sbjct: 185 EIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRLND 231


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V   + GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 225

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           M+ILL+EDD    + +   L S     ++ D  +DG E L    +  +D  I+D  +  +
Sbjct: 1   MKILLVEDDNTTGNYVTKGLASAG---HIVDWVKDGREALAAGLDGGYDVAIVDRMIPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++++LR A I  P+  L+ MS ++D+V GL++G DDY+ KPF   EL ARI A+VR
Sbjct: 58  DGLNLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVR 117

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R      ++ +  GDL +NL  +T    G RI L  +E+ ++ELL   +   LTK MFL 
Sbjct: 118 RPPITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++   +P+  +++  I +LR K+      +  + TV   GY L
Sbjct: 178 KIWNFNFDPQSSVVETHISRLRAKIDKPF-DQPLLHTVKNTGYTL 221


>gi|300698227|ref|YP_003748888.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum CFBP2957]
 gi|299074951|emb|CBJ54520.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum CFBP2957]
          Length = 246

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE------------FDA 47
           MR+LL+EDD  +  ++   L+ + F + +V D GE  ++                  FD 
Sbjct: 1   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRD-GEAAVQAVGAPGAAAAAAESSASMFDL 59

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +E
Sbjct: 60  MLLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQE 119

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R   
Sbjct: 120 LAARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFGVLHALLSRPGK 179

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+      
Sbjct: 180 VWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPT 234

Query: 228 ETCE 231
              E
Sbjct: 235 PPAE 238


>gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 230

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 129/227 (56%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDDK LA  +EL LK   +       G  G+   +F+E D I+LD  L  + G E
Sbjct: 5   KVLVVEDDKRLARLLELELKHAGYESRCECDGTQGLRSVRFWEPDLILLDRMLPGMDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R+   S P+ +L+      DKV GL SGADDYI+KPF  EEL+AR+RA +R +  
Sbjct: 65  VCRNVRLFS-SVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALRGNDS 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+ L+V  +L+++    TV      I LT +E+ ++E +   ++  LT+   L+H++ 
Sbjct: 124 PGQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQILDHVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E E  I+DV+I  LR K+ +A   K  + TV G GYVL +   D
Sbjct: 184 ETYEGEANIVDVYIRYLRGKMDDAFEPK-LLHTVRGVGYVLDKKNTD 229


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D ++LD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEMRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 223

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED   +   ++  L+  +  V V   G + +E+ +   FD I+LDL L    G 
Sbjct: 1   MRILIVEDQADILRHVKRALERADHEVSVAIDGPEAVEVVRERRFDLIVLDLSLPGFDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV++ +        V +L+    I+D+V+GL +GADDY++KPF+ +EL+AR+ A+ RR  
Sbjct: 61  EVMKRISPMDARPRVLMLTARGEIDDRVKGLNAGADDYLTKPFDMKELLARVEALGRRVL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++  GD+ +++  +     G RI L+ +E+ ++++L      T ++      ++
Sbjct: 121 PGVDDNILEAGDVVLDVIHRVATRNGDRIELSPREFSLLQVLIREPGRTFSRGELFERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E K +++F+ +LRKKL +  G  + IETV G GY L
Sbjct: 181 GREQTYEAKTVEIFVMRLRKKL-DVPGKPSAIETVRGIGYKL 221


>gi|260904787|ref|ZP_05913109.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Brevibacterium
           linens BL2]
          Length = 219

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 127/222 (57%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIP 58
           RIL++ED+  ++  I   LK+  F   VT++  DGI   +L    +FD ++LD+GL  + 
Sbjct: 3   RILVVEDEARISAFIAKGLKAAGF---VTEIAADGITGRDLALTGDFDLLVLDIGLPGLD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF VL  LR  +   PV +L+   + +D +  L+SGA DY+ KPF   EL+ARIR  ++ 
Sbjct: 60  GFSVLSQLRKDRPDLPVLVLTARDNADDTIFALESGAADYMIKPFRFGELLARIRLRLKE 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   A Q+ +V GD+ ++L  + V V    I L+ +E  + E+L   +   L++E  L+H
Sbjct: 120 TATEAPQTELVRGDVRIDLLKRQVWVADKIIDLSARELSLAEILLQNRGNVLSREQLLSH 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +P   ++DV++  LRKKL     G +++ TV G GY
Sbjct: 180 VWGFDFDPGSNVVDVYVGYLRKKL-----GSDFVTTVRGFGY 216


>gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 238

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+      ++D +++D  L    G 
Sbjct: 15  MRLLIIEDDRESADYLVKAFREVGHIAELARDGEEGLSFADGGDYDVLVIDRMLPKRDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 75  SVIGCLREKGILTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRHG 134

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A ++L   GDL ++  ++ V   G  + L  +E++++E L       +T+ M L +++
Sbjct: 135 GRAEETLYRVGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      +  + T+ G GY++R
Sbjct: 195 DYHFDPQTNVIDVHISRLRSKIDKGF-EQPLLHTIRGAGYMVR 236


>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 233

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +E       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKID-NTIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELR-QRHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRRSNW 120

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             Q          +L V G L +N   +     G  + LTG E+ ++ LL+      +++
Sbjct: 121 SEQQQTNENNGSPTLEVDG-LQLNPGRQEASFNGEALDLTGTEFTLLYLLAKHLGQVVSR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 180 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRQDGHPWFKTLRGRGYLM 229


>gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 234

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDKA+  SI + LK+ N++V     G+D +E  +  E   +I+DL + ++ G E
Sbjct: 5   KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R  K   P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR   
Sbjct: 65  AILKIR-EKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYK 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   +  I  G + +N   KTV V G ++ LT  EY+++ELL    N   + +    
Sbjct: 124 YQSKEENERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYE 183

Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   +EP  E K + V I ++R+K+        Y++  WG GY
Sbjct: 184 KVW---NEPAIEAKTVTVHIRRIREKIEIDPKKPLYLKVAWGLGY 225


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 82  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 141 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 244


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V     G + IE  K  ++D ++LD+ +    G E
Sbjct: 3   KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNR 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++    + V LD++ V V G  ++LT KE+ ++ELL    N   ++   LN
Sbjct: 122 KQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+    G   YI T WG GY  +
Sbjct: 182 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 227


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F   V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    P+ +L+  +   D V GL+SGADDYI KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRVLR-SDSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+    + +++ A  V  +G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGY 220


>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 223

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++++ H + L L+ E++ V     GE+ ++L     FD IILDL L D  GF
Sbjct: 1   MHILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR ++   P+ +L+    + DK+ GLQ GADDY++KPFN  ELV R++ +++R  
Sbjct: 61  DLIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                     D  + +D+  +T+ + G  + LT +EY ++ L          +E  L  +
Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +D+ + +LRKKL         ++T++G GY
Sbjct: 181 WGFDFSGQTRAVDIMVQRLRKKLGPQG---ERLKTIYGAGY 218


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+   + V +   G+   EL     FDAI+LDL L  + G  
Sbjct: 3   KILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  KI+TPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQT 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     +I   D+ ++ + K V   G  + LT +EY+++   S R    + +E  L 
Sbjct: 123 ERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E +++D+ I  LR+K+ N       ++TV G GY +
Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGYTM 227


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 229


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227


>gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016]
 gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 239

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +L+ E F  ++    G DGI LCK  + D ++LD+ + D+ GF
Sbjct: 9   KILLIDDEIELLKLMETVLRKEGFKRIFKALKGTDGINLCKNEKPDIVVLDVMMEDMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RA+R      PV  LS      DK+  L  GADDY++KPF+ +E+V RI+A +RR+ 
Sbjct: 69  EVCRAIREFS-YVPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRNI 127

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                L      I  GDL ++     V   G  I LT KEY ++  ++   N  LTKEM 
Sbjct: 128 YIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEMI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +++   E     I V + KLR+KL +      YI TV G GY
Sbjct: 188 CDEVWNDNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGY 232


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  ++  L+   + V V   G    +  K  +F+AI+LDL L ++ G  
Sbjct: 3   KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  K+STP+ +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 63  VLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +I   DL +N   KTV  +   + LT +EY ++   + R    + +E  L
Sbjct: 123 STDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E +++D+ I  LR K+ +       ++TV G GY +
Sbjct: 183 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 228


>gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  +   L++E F V V   G DG+ + +   FDAI+LD+ L    G+
Sbjct: 1   MRLLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIMLPGANGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR     TP+ +L+    I D+V GL +GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+ V  +G +I LT +E+ ++E L       L K   L H++D
Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  I++V++ +LR KL         IETV G GY L  +A
Sbjct: 181 FDFDGDPNIVEVYVRRLRTKLGRPT-DPPVIETVRGAGYRLVAHA 224


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+ + +D+K +   ++  LK E + V V   GED + L +   +  +ILD+ +  I G 
Sbjct: 4   IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-E 172
                SR   QSLI    L+++L   TV   G  I LT KE+++++  +       TK +
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F N   D   E +  ++ V I +LRKK+        +I+TVWG GY
Sbjct: 183 LFRNAWSDQYIEDDNTVM-VHIRRLRKKIEPDPSDPQFIQTVWGIGY 228


>gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 232

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 22/234 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     GD S    A T+EV G R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLM 228


>gi|160945542|ref|ZP_02092768.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443273|gb|EDP20278.1| hypothetical protein FAEPRAM212_03071 [Faecalibacterium prausnitzii
           M21/2]
          Length = 236

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   LK+  +       GE  I +   +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R++R    + P+ +LS  S   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G    + V G L ++  A  V +  + +HLT  EY+++ +L+      LT       
Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLSENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++    E ++  + V++  LRKKL       + I+T  G GY +     DE
Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235


>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
 gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
          Length = 240

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 7   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 67  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G      DL +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 127 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 230


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   F V     G   I      E D IILD+ L D+ GF 
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR +  ++P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 66  VTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  GDL+++ D   V +   +I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 126 DDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+KL +    +  I+T  G GY+L+
Sbjct: 186 YDFNGDAGIVESYISYLRRKL-DIHTEEPLIQTKRGFGYMLK 226


>gi|56130780|ref|YP_145683.1| two component response transcription regulator [Ralstonia
           metallidurans CH34]
 gi|94152513|ref|YP_581920.1| regulator protein CopR [Cupriavidus metallidurans CH34]
 gi|10047062|emb|CAC07978.1| CopR protein [Ralstonia metallidurans CH34]
 gi|56068770|emb|CAI11332.1| two component response transcription regulator [Cupriavidus
           metallidurans CH34]
 gi|93358883|gb|ABF12970.1| CopR regulator from the two components sensor/regulator family
           involved in Cu(II)/Cu(I) resistance [Cupriavidus
           metallidurans CH34]
 gi|222875178|gb|EEF12309.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG        +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEVKTGEYLRQGLTEAGFVVDLVANGLDGQHFAVNETYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R +  + PV  L+   S+ D+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  HILHAIRASGNAVPVLFLTARDSVADRVRGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++EL + R+   L + +  + ++
Sbjct: 121 VQLAMDRIQVADLILDLSRRRASRGGRRITLTSKEFALLELFARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDGFEVK-LIQTVRGMGYVL 221


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249


>gi|322833041|ref|YP_004213068.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321168242|gb|ADW73941.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 225

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L + + + L  +  +V       D +        + ++LDLGL D  G 
Sbjct: 1   MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKVDALHQLDACVPELVLLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  SLMAYLRQQLKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I    LS+++  + V V    + LT  EY ++E L +R +  LT+  FL     
Sbjct: 121 GFENEVIEIRGLSLHVPTRRVTVSARNVELTASEYALLETLMMRTDRVLTRR-FLEERIF 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G  Y+ TV G GYV+
Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215


>gi|313898763|ref|ZP_07832297.1| putative transcriptional regulatory protein CusR [Clostridium sp.
           HGF2]
 gi|312956345|gb|EFR37979.1| putative transcriptional regulatory protein CusR [Clostridium sp.
           HGF2]
          Length = 222

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++A+A  + L LK   +       GE G  + +   +D ++LD+ L  I G+
Sbjct: 1   MRLLIVEDERAIAEVMMLNLKRVGYECEYAQDGEMGAAMVEKQSYDLVLLDIMLPKINGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  L  A++  PV  ++   S++D+V+GL  GADDY+ KPF  +EL AR+ +++RR  
Sbjct: 61  ELMEYL--AQLQIPVIFITAKGSVQDRVKGLHMGADDYLVKPFAVDELTARVESVLRRYH 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q + V  D++++   + VE +   I LT KEY+++  L   KN  L ++     ++ 
Sbjct: 119 KSMQDIHVL-DVTIHTATRLVEKENRTIALTKKEYELLLYLVQNKNIALYRDTMYEKVWH 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +  + + +D+ I +LRKKL         I+TV+  GY+L    KDE 
Sbjct: 178 EEEFEQTRTLDLHIQRLRKKLD----WHRVIQTVYKIGYML--EVKDEV 220


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  ++  L+   + V V   G    +  K  +F+AI+LDL L ++ G  
Sbjct: 7   KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  K+STP+ +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 67  VLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 126

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +I   DL +N   KTV  +   + LT +EY ++   + R    + +E  L
Sbjct: 127 STDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E +++D+ I  LR K+ +       ++TV G GY +
Sbjct: 187 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 232


>gi|330877751|gb|EGH11900.1| winged helix family two component transcriptional regulator
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330965158|gb|EGH65418.1| winged helix family two component transcriptional regulator
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 221

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 16/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL+EDD  +  +I+  L   N   Y  D  +DG+      +   +D ++LDLGL   
Sbjct: 1   MRILLVEDDPMIGEAIQGAL---NDASYAADWVKDGLLALTALDAQYYDLVLLDLGLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    + P+ I++   S++D++RGL  GADDY+ KPF+  EL+AR+RA++R
Sbjct: 58  DGQAVLSNIRGQSNAVPLLIITARDSLDDRLRGLDGGADDYLLKPFDMAELLARMRAVLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  G  + L+  G   V LD  + E    Q   + L+G+E+ +++ L +R    L++   
Sbjct: 118 RKGGSGKPLLGNG--VVTLDPSSKEACTDQNPAVQLSGREFALLQALLIRPGAILSRADL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            + +Y   +E E   ++  I  LR+KL     G + I+ V G G+++ +NA
Sbjct: 176 EDRIYGWGNEVESNAVEFLIHALRRKL-----GSHVIKNVRGVGWMVSKNA 221


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + +        D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V      + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    EP    +DV++  LR+K + A+G    + TV G GYVLR
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEASGEPRLVHTVRGVGYVLR 240


>gi|313764887|gb|EFS36251.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL013PA1]
 gi|313815549|gb|EFS53263.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL059PA1]
 gi|314916347|gb|EFS80178.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL005PA4]
 gi|314917344|gb|EFS81175.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA1]
 gi|314921948|gb|EFS85779.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL050PA3]
 gi|314930787|gb|EFS94618.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL067PA1]
 gi|314955091|gb|EFS99496.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL027PA1]
 gi|314959289|gb|EFT03391.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL002PA1]
 gi|315099638|gb|EFT71614.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL059PA2]
 gi|315102131|gb|EFT74107.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL046PA1]
 gi|327454381|gb|EGF01036.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA3]
 gi|327456448|gb|EGF03103.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL083PA2]
 gi|328756141|gb|EGF69757.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL087PA1]
 gi|328758521|gb|EGF72137.1| putative KDP operon transcriptional regulatory protein KdpE
           [Propionibacterium acnes HL025PA2]
          Length = 227

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD     ++ + L +  + V +   G+  +E+   ++ D I+LDLG+  + G 
Sbjct: 1   MRILIADDDPQFLRALRITLGARGYEVLLARDGQHALEMAIDHKPDIILLDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A+R    S P+ ++SG S   +KV  L +GADDY++KPF+ +EL+ARIR + RR  
Sbjct: 61  KVIEAVR-GWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLTRRIG 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + V+L A TV   G  + LT  E++++ELL   +   +T++  L+ 
Sbjct: 120 QDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTRQTMLSQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      +   + ++I +LRKKL        Y+ T  G GY
Sbjct: 180 VWGSEHVTDTGYLRLYISQLRKKLEPEPSRPRYLITDAGMGY 221


>gi|293394415|ref|ZP_06638714.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291423104|gb|EFE96334.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 225

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L + + + L  +  +V       D +        + ++LDLGL D  G 
Sbjct: 1   MKILLIEDDLDLGNGVRIALADQGLDVIWVRRKVDALHQLDACVPELVLLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      PV IL+   +++D++ GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  SLMAYLRQQLKGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAELLARVRALARRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I    LS+++  + V V    + LT  EY ++E L +R +  LT+  FL     
Sbjct: 121 GFKNEVIEIRGLSLHVPTRRVTVSARNVELTASEYALLETLMMRTDRVLTRR-FLEERIF 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E     +DV +  LR+K+     G  Y+ TV G GYV+
Sbjct: 180 GAKENMSNALDVHMGNLRRKI-----GDGYVRTVRGVGYVI 215


>gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15]
          Length = 219

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + ++ G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R ++ +TP+ +LS    + DKV GL+ GADDYI KPF+ +EL+AR++A++RR + 
Sbjct: 66  VCRDIR-SRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124

Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           G + S        +    +++NL   +V V   ++ +  KE +++  L+   N   T+E 
Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I ++R+K+ N       + TVWG GY
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRIREKIKNHDTWG--LATVWGIGY 228


>gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
 gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
          Length = 231

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      ++  L    + V +   G +G+     + +D IILD+ L  + G+
Sbjct: 1   MKILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           ++L+ LR +++STPV +L+    +ED+V+G + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 61  QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120

Query: 118 -RSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +S+  +QS  IV  DL +++  +T       I LT KEY ++ELL  ++   L++    
Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++D   + +  +IDV + +LR K+ +    K  I T+ G GY L +
Sbjct: 181 SLVWDMNFDSDTNVIDVAVKRLRSKI-DRPFEKELIHTIRGMGYKLED 227


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +R+L+ +D+K +   ++  L+ E   +Y+ D+  DG E    +E   ++ IILDL +  +
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERE---LYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++R
Sbjct: 61  DGIEVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +    ++L+    L+++++  TV V    I LTGKE ++++  +       T
Sbjct: 120 RFLVLGSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           K     +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGY 228


>gi|332342732|gb|AEE56066.1| transcriptional regulatory protein PhoP [Escherichia coli UMNK88]
          Length = 223

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEMMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 65  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 124

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 125 LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 244 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 289


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A   +  L+   F V V + G  G+      +FD  ILDL L  I GFE
Sbjct: 3   RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKRIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A+ ST + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  GVLQRLR-AESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H Q S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QHLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFEDK-LIHTLRGVGYVL 220


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ R
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  +   S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G +  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GERRLLHTLRGVGYVLRE 237


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  124 bits (312), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  I +  + E FNV     G+  +   +  EF   ILD  +  + G++V
Sbjct: 10  ILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSGYDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR    + P+ +++    +ED+V+ L +GADDY+ KPFN  EL+AR+RA+VRR+   
Sbjct: 70  CQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNSNT 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++L+  G LS+N       V G  IHLT +E+ ++  L  +    +++E  +  ++ 
Sbjct: 130 SNKKALLEYGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++ ++D +I  LR KL     G+  I+TV G G+ LRE+
Sbjct: 190 EDYFGDITVVDTYIKYLRVKLRTHGLGE-MIQTVRGVGFTLRES 232


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+V V   G   +   + +  D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR  + + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG
Sbjct: 63  VCRALR-QRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR-RG 120

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G + ++++   V V G  + L  KE++++E+        LT+   ++ 
Sbjct: 121 EIDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGY 222


>gi|226364471|ref|YP_002782253.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242960|dbj|BAH53308.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 238

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G D + +      DA++LD+ +  I G  V+ ALR      P
Sbjct: 21  SLERGLRLSGFTVLTAVDGADALRVVSEQRPDAMVLDMNMPVIDGTGVVTALRAMSNDIP 80

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSL 126
           +C+LS   +++D++ GL+SGADDY+ KPF   EL+ARIRA++RR        +   A   
Sbjct: 81  ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTTAAPADSQATPP 140

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I  G L +   A+ V + G  + LT +E++++E+L+      L++E  L  ++      +
Sbjct: 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++DVF+  LR+K     G    + TV G G+VLRE +
Sbjct: 201 TNVVDVFVGYLRRKF-EVGGQPRILHTVRGVGFVLREPS 238


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E +   +   GE  +     ++ + ++LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TPV +LS    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR   
Sbjct: 66  VCREIR-AKSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              ++         +   DL VN+    V   G  + +  KE +++  LS   N   T+E
Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L++++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDNQFWS--ISTVWGIGY 229


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ AL   + L L+ E F+V     G   + + +  + D +ILDL + ++ G+E 
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGGYEF 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           LRA   AK S TPV +L+      DK+ GL+ GADDY++KPFN  EL+ARIRA++RR++ 
Sbjct: 64  LRAF--AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   D+ ++   +TV V G  I LT  E+ ++  L        ++   L+ + 
Sbjct: 122 APLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  LR K+ +      YIETV+G GY
Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGY 221


>gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 223

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 1   MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 61  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + +  +E+ +++ L       +++E     L
Sbjct: 121 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 223


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 124/226 (54%), Gaps = 13/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59
           IL+++DDK + H I + L++E      T   E+ +E L K  E  FD IILD+ + ++ G
Sbjct: 5   ILIVDDDKEIRHLISVYLENEGLK---TSQAENALEALGKLEEQAFDLIILDIMMPEMDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E    +R  +   P+ +LS  S   DK++GL SGADDYISKPFN  EL+AR+++ +RR 
Sbjct: 62  IEACMKIREEQ-HMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRY 120

Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + +       +++IV G L +N D + V   G  I LT KE+ ++ELL+  K   ++   
Sbjct: 121 KKYNTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSK 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++          + V I K+R+K+        YI+T+WG GY
Sbjct: 181 IYESVWKEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGY 226


>gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +LI   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|331003642|ref|ZP_08327137.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412269|gb|EGG91662.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA S++ + +   ++      G +G+EL +F  FD ++LDL L  + GF
Sbjct: 1   MNILVVEDEVLLASSLKEIFEECGYSTICAYDGMEGLELARFSHFDILVLDLMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR  K   P+ +L+  S I D+V GL SGAD Y++KPF++ EL+A + A++RR +
Sbjct: 61  QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR-Q 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I  G+ ++++D+  +    + I L+ KE+QM+ LL       ++K +FL  ++ 
Sbjct: 120 GKEVNQISYGNTTLDIDSGELISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V+I  LRKKL   +   + I +  G GY L
Sbjct: 180 YDSDATENNVEVYIGFLRKKLKTLSSDISIIAS-RGLGYHL 219


>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ ++   + + L+ E + +     G+  +   + +  DA++LDL L D+ G 
Sbjct: 23  VRVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  LR      PV  L+   + ED++ GL +G DDY++KPF  E++VAR+R ++RRS 
Sbjct: 83  SALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSG 142

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + +++V GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 143 AADRRSDAVLVVGDLILDEDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++++I  LR+K+   AG +  I T  G GY+++
Sbjct: 203 VWSYDFGGQANVVELYISYLRRKID--AGREPMIHTRRGAGYLIK 245


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       QSL + GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 IAVDNQEEDSKLQSLQI-GDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249


>gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
          Length = 232

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYE-FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     + +V D       L   +E FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + +  +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEEPKMNE 240


>gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 241

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 13  LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R +R
Sbjct: 73  SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 131

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L+ +
Sbjct: 132 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N
Sbjct: 192 WETDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL ++D+  +   ++  L  E F V     G D +++ +  + D IILD+ L ++ G++V
Sbjct: 4   ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           L+ L+  + +  TPV ILS  +   DKV GL+ GADDYI+KPF+  E+VAR++A +RR  
Sbjct: 64  LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRKS 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++  A+  I  G L +  +     + G ++ LT KE++++ LL+       T+++ L
Sbjct: 124 APPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDILL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      E + +DV I  LR+K+        YIETV   GY  R+ +
Sbjct: 184 EKIWGYDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRFRDTS 233


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   I   L    + V     G  G+     +  DA++LDL L  + G +
Sbjct: 6   RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   P+ +L+ +   ED+VRGLQ GADDY+ KPF+  ELV RI +++RRS  
Sbjct: 66  VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A ++  +V G L V+   +   + G  + LTG+E+ ++  L        T+   L  ++
Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G +  +   + V + +LR+KL         I T+WG GY
Sbjct: 186 -GWEYGDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGY 224


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +   L++  F   V   G   +E  + +E D I+LD  L  I G E
Sbjct: 10  RVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    P+ +L+ + + +D++ GL+ GADDY++KPF+  ELV RI++++RR+ G
Sbjct: 70  VTRRVR-AICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALG 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S    G L ++   + V   G  + LT +E+ ++  L    +   ++E  L H++
Sbjct: 129 PLSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    ++  + V + +LR K+ +       ++TVWG GY+LR   
Sbjct: 189 -GWTFGDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLLRSEP 233


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ E + V     G+  +E  + + FD I+LDL L  + G  
Sbjct: 7   RILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    S P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-SVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            A+    ++  GDL +++    V V+G  + LT  E++++  L+       T+    E  
Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L + ++G +    + ID  +  LR KL +      ++ TV G GY
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGY 226


>gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus
           fusiformis ZC1]
          Length = 235

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD A+A+ I++ L + ++   +   G   ++     + D  ILDLGL DI G E
Sbjct: 4   RILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALTIKPDVFILDLGLPDIDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R     TP+ ++S      DK+  L +GADDY++KPF+ EEL+ARIR  +RR   
Sbjct: 64  LITKIRSWN-QTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVALRRM-A 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + Q L         G L +N    TV V G  IH+T  EY+++ +LS      LT    L
Sbjct: 122 YEQPLEKENPIFTNGYLQINYVDHTVFVNGKEIHVTPIEYKLLIVLSKNVGKVLTHNYIL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAKDE 228
             ++    + +V  + VF+  LRKK+         I+T    GY +LR + +DE
Sbjct: 182 KEIWQNALQSDVPSLRVFMATLRKKIEVNPAQPKLIQTHVRVGYRMLRYHEEDE 235


>gi|262370731|ref|ZP_06064056.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
 gi|262314531|gb|EEY95573.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
          Length = 226

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  S P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++R
Sbjct: 58  SGWNIINDIRSSGKSMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +     ++I   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 118 RGQQREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKVDSNFTPK-LIQNIRGMGYVL 221


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 127/222 (57%), Gaps = 10/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL+++D++ + + + + L  E + V   + GE G++L  FYE  FD +ILD+ L    G
Sbjct: 8   RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKL--FYEKPFDLVILDVMLPKKDG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +LR ++     TPV +L+     ED+V G + GADDYI+KPFN + L+AR+++++R++
Sbjct: 66  WSILREIK-KYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKT 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S+I  GDL +N  + +V      I L  KEY ++  L       L++E  LN ++
Sbjct: 125 NNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + ID  I  LRKK+     GKN I+T+ G GY L
Sbjct: 185 GYDFLGDDRTIDTHIKNLRKKI-----GKNAIKTIRGIGYKL 221


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
 gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           sp. ADP1]
          Length = 237

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 128/218 (58%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   +++ L+++ + V+V + G  G+E+      D +ILDLGL D+ G EV
Sbjct: 11  ILIIDDEPQIRKFLDIALRAQGYAVHVAETGMKGLEILASQGADLLILDLGLPDMDGAEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      PV +LS     + K++ L +GA+DY++KPF+ +EL ARIR + R+    
Sbjct: 71  LKEMRQWS-QIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQQPSQ 129

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++  +V   G L V++   +V++ G  + LT KE+Q++ LL   +   +T++  L+ L+ 
Sbjct: 130 SEHNLVFNDGQLFVDVAEHSVKLAGDDVVLTKKEFQLLALLIRHQGKIVTQKQILSELWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              E +   + + + KLR KL ++A   +YI TV G G
Sbjct: 190 ITHEEDTHYLRILVKKLRTKLGDSALQPHYIFTVAGIG 227


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 51  KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 110

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 111 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 169

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 170 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 229

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 230 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 279


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L  E F V +   G   +   + +E   I+LDL L    G E
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +  V +LS      DKV GL +GADDY+ KPF   ELVAR++A++RR R 
Sbjct: 73  VCRRIRTFSDAY-VLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   ++L     L +++ A+TV V    + LT  E+ ++  L+ R +   ++   +  +
Sbjct: 132 SSMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +  I+DV +  LR+KL + A    +I TV G GY LR +
Sbjct: 192 WGSPWFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSLRSS 237


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE  +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|15891165|ref|NP_356837.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15159516|gb|AAK89622.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 229

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L ++ + V      +  +EL +  + D ++LDLGL D+ G 
Sbjct: 6   VRILIVDDEPPIRKLLRVGLSTQGYAVSEAMNAKVAMELVREDKPDLVVLDLGLPDVSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           ++L   R   ++ PV ILS  +     VR L+ GADDYISKPF   ELVARIR  +R   
Sbjct: 66  DLLEKWRSDGLALPVIILSSRTDEAGIVRALELGADDYISKPFGMNELVARIRVALRHRL 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +++G  + +  TGDLSV+L  + V+V+   + L+ KEY ++ +L       LT    L H
Sbjct: 126 QTQGE-KPVFQTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEH 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D  +  +V+ + V++ +LR+K+        YI T  G GY L+E
Sbjct: 185 VWD--ELTDVQYLRVYVRQLRQKIEKLPDQPRYILTETGVGYRLQE 228


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F+V     G + + L +    D ++LD+ L D+ GF V
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFTV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   ++ PV  L+      DK+ GL  G DDY++KPF+ EE+VARIRA++RR+R  
Sbjct: 73  TRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRSL 132

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I+ GDL ++ D   V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 133 EDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKL-----SNAAG------GKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+     ++AAG          I+T  G GY+LR
Sbjct: 193 EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYMLR 246


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  124 bits (312), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 132/227 (58%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + +++ L+ E ++V     G++ +E    +++D I+LDL + ++ G E
Sbjct: 6   KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCQKLRKQK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   LS++ DA  V V    I+LT KEY+++  L+   +   ++E 
Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  +++     +++ +D  I +LR+KL+  +    + I TVWG GY
Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGY 231


>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 239

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G      DL +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 132/225 (58%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA  ++  L  E F V V   G DG+ +     +D I+LD+ L  + G+
Sbjct: 1   MRVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A+  TP+ +L+    + D+   L +GADD++SKPF+   L+AR+RA++RR  
Sbjct: 61  TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRG- 119

Query: 121 GHAQSLIVT-GDLSVN---LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A+ + +T GDL+V+   L  +  EV+   I LT KE+ ++  L+ R    ++K   L 
Sbjct: 120 GRARPVSITVGDLTVDPAGLRCRRGEVE---IALTPKEFAVLHGLARRPGEVVSKSELLA 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +D   + +  I++V+I  LR+K+ ++  G++ + TV G GY L
Sbjct: 177 QAWDFSYDGDPNIVEVYISALRRKI-DSPFGRSSLVTVRGAGYRL 220


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D ++LD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  I L L+S+ + VY    GE+ +E  K  + D  ILD+ L  I GF
Sbjct: 1   MNILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ +R  + + PV +L+  +   DK+ GL  GADDYI KPFN  EL+AR++A +RR  
Sbjct: 61  EILKKIR-ERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKE 172
                +R  +  +I    L +N ++        ++ LT  E+ ++ +L   +   + ++E
Sbjct: 120 QYNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +F N   +   +     + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 LFENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230


>gi|325288662|ref|YP_004264843.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964063|gb|ADY54842.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 225

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  +++ E ++V     G  G++  +   +D I+LD+ L    G+
Sbjct: 1   MRILIVEDEIRLAEALTQIMRQEKYSVDAVHDGAAGLDYARSGLYDVIVLDIMLPKKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR AKI+TP+ +L+    + DK+ GL  GADDY++KPF  EEL+ARIRA+ RR  
Sbjct: 61  EIVNELRTAKITTPILLLTARDEVNDKIMGLDFGADDYMTKPFVPEELLARIRALSRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL++NL A T+      + L  KEY+++++L       + KE  +  ++ 
Sbjct: 121 EVILEELSFADLTLNLAAYTLVCGPKSVRLGYKEYEVLKILMSNPKVIVLKEDLIIKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   ++ +I  LRKK     G K  I TV   GY L
Sbjct: 181 IESNAEDNNVEAYISFLRKKFF-YLGSKVNISTVRKVGYRL 220


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L+++ V  +   I LT KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +   +   I K+R K        N+I TVWG GY
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222


>gi|298695354|gb|ADI98576.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 231

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ H +++ L  + +NV   +         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++ IV   G LS++  +K+V +  H +HLT  E+ ++ELL+  K   LT EM L  +Y
Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNHEVHLTPNEFSLLELLANHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|240145644|ref|ZP_04744245.1| KDP operon transcriptional regulatory protein KdpE [Roseburia
           intestinalis L1-82]
 gi|257202265|gb|EEV00550.1| KDP operon transcriptional regulatory protein KdpE [Roseburia
           intestinalis L1-82]
          Length = 267

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI++D ++++ I   ++ EN+ +Y+   G+ G+E+      D I++D   +D+ G  
Sbjct: 11  KILLIDEDTSISYLIRRAMEKENYKIYIAGSGKQGMEMSTGVCPDLILMDNKFSDMEGIT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRSR 120
           +++  R      P+ ILS  SS  DKV  L +GADDY+ KPF+++EL ARI  A+ RR  
Sbjct: 71  LIQWFR-EWTDCPIIILSERSSYLDKVEALYAGADDYMVKPFHEKELAARIFSALRRRIS 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +    G+L V+   + V + G  +H +  EY++IE L+L   T +T +M L  ++ 
Sbjct: 130 VGAHTYYEAGNLKVDFTKRQVLLGGTEVHFSPVEYRIIESLALNSGTVVTYQMLLEKIWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E   +I+ V +  +RKK+ ++     YI T+   GY + E+  ++
Sbjct: 190 PYAEQNSRILRVNMTNIRKKIESSPLEPEYITTIPRVGYRMLESQAEK 237


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++   + L L+     V   + GEDG+ L   +  + ++LDL L  I G +
Sbjct: 3   RVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGINGVQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +    P+ +L+      D V GL++GADDYI KP   E + AR++A++RR   
Sbjct: 63  VCRRIRESS-QVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLST 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    +   G+L+++    TV  +G R+ L   E +++  LS       +++  L ++
Sbjct: 122 PAGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D     + +++D  + +LR K+ N AG   YI+TV G GY
Sbjct: 182 WDHSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGY 222


>gi|71907917|ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica
           RCB]
 gi|71847538|gb|AAZ47034.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 221

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  +I+  LK  ++       G+  +       +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ++R      P+ I++    + D++RGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EVLTSIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+A S++  G   V+LD  T E        + L+ +E+ +++ L +R    L++    + 
Sbjct: 121 GNATSVLSNG--VVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDLEDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y   +E E   ++  I  LR+KL     G   I+ V G G+++ +N
Sbjct: 179 IYGWGEEVESNAVEFLIHALRRKL-----GGEVIKNVRGVGWMVSKN 220


>gi|298244272|ref|ZP_06968078.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551753|gb|EFH85618.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRILL+ED + L H +++ L  E    Y  D   DG+E   F E   +D +ILD+ L   
Sbjct: 1   MRILLVEDHRRLNHELQMSLVDEG---YAVDTAFDGVEGQAFAESTPYDVLILDILLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V R LR   I+TP+ +L+   ++ D+VRGL SGADDY+ KPF   EL+AR+RA++R
Sbjct: 58  DGLQVCRDLRRQHINTPILLLTARDTVADRVRGLDSGADDYLIKPFALSELLARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+     +++  GDLS++     V+  G RI LT + + ++E L    N  LT+EM  NH
Sbjct: 118 RNGAEKSAVLCVGDLSLDPATHVVKRAGQRIELTPRLFALLEYLMRHPNQILTREMIANH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++       +  ++V + +LR ++  A   K  +ETV G GY L
Sbjct: 178 IWSYEFTGTLNAVEVCMRRLRCQVDEAFPIK-VLETVRGVGYRL 220


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R  + + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +        A  +     L++N+      + G  + LT  E+ ++ +L  R+ + ++ E 
Sbjct: 124 YNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183

Query: 174 FLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++  ++E   K    I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEVW--QEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|206890413|ref|YP_002248447.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742351|gb|ACI21408.1| two-component response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 214

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 8/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ L  S+E  LK ENF             +   YEFD I++DL L    G 
Sbjct: 1   MKILLVEDDRVLGESLEEYLKLENFETLWLWDERKLPNVLNVYEFDVIVIDLILNYSRGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R   I TP+ IL+    +EDK      GADDY++KPF  +ELV R+ A+ +R  
Sbjct: 61  DLITFIREKGIKTPILILTAKKRVEDKETCFLRGADDYLTKPFEPKELVLRLLALSKRK- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S+I  GD+S+N+D K +      I L+   + ++ L   RK   + KE  LN+++ 
Sbjct: 120 -HIDSMINIGDISINIDTKIILKGSKEIKLSKTAWDLLTLFVKRKGEIIDKETILNYVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G+   E ++I  +I +LRK L         I+   GRGY L
Sbjct: 179 GKAVGE-EVIRAYIKELRKVLPEGT-----IQNYKGRGYKL 213


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L  +   +DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V G+ + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235


>gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 228

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +LI   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score =  124 bits (311), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G+ G E+     +D +ILD  L    G 
Sbjct: 7   MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++ + +    QG  I L+ KE Q+++         LT    L 
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           HL++  + P   +I   I  LR+K+       + I TV+G+GY
Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKI-EVGKELSLIHTVYGKGY 228


>gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 242

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + ++ E +  Y    G   ++L + +  DA+ILD+ L D+ G 
Sbjct: 17  IRVLVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIMLPDMDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  L      TPV  L+   ++ED+VRGL +G DDY++KPF+ EE++AR+R ++RRS 
Sbjct: 77  SVLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSG 136

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R +  S +  GDL++N D   V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 137 AARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     +  +++++I  LR+K+   AG    I T  G GY+L+  
Sbjct: 197 VWNYDFGGQANVVELYISYLRRKID--AGRPPMIHTRRGAGYILKPG 241


>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 236

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D++ L  S++  L +E F V     G  G+++ +   +D I+LD+ L  + GF
Sbjct: 1   MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR  +  TP+ +L+      D+   L +GADD + KPF+   LVARIRA++RR+ 
Sbjct: 61  KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL+++  +  V      I LT +E+  +ELL   K   L K+  + H++D
Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +  I++V+I  LRKK+    G K  I T+ G GY L E+ 
Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKA-ITTIRGVGYRLEEDG 224


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 63  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGNDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|304397248|ref|ZP_07379127.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308186446|ref|YP_003930577.1| Response regulator [Pantoea vagans C9-1]
 gi|304355397|gb|EFM19765.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308056956|gb|ADO09128.1| Response regulator [Pantoea vagans C9-1]
          Length = 222

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F   +  D  ++DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLAVQLRDMGHQV---DAAEDAKEADYFLREHLPDIALVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +  P+ +L+     + KV  L++GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGMSLIRRWRSDAVRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  +I      V+L  + + V    + LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGHASQIIDMAPFQVDLSRRELTVNEEPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHPTDVIATVRGQGY 218


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  +L     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-----ELCKFYEFDAIILDLGLTD 56
           +ILL++D+  L  ++  +LK E ++V V + GE  +     ++ +   +D +ILD  L  
Sbjct: 3   QILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWMLPK 62

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EV + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++
Sbjct: 63  LSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALL 122

Query: 117 RRSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS   +Q+        I    L ++L+++    QG  I L+ KE Q++  L    +  L
Sbjct: 123 RRSEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQLL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           T +    HL+   D+P   ++   I  LR+K++ A      I T++G+GY
Sbjct: 183 THDQIYQHLWPSGDQPSSNVLAAQIRLLRRKIA-AKNSPPLIHTIYGKGY 231


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I+ G L+++L+++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +   +   I K+R K    +   N+I TVWG GY
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGY 222


>gi|29375184|ref|NP_814337.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227517526|ref|ZP_03947575.1| response regulator [Enterococcus faecalis TX0104]
 gi|255973653|ref|ZP_05424239.1| response regulator [Enterococcus faecalis T2]
 gi|257085933|ref|ZP_05580294.1| response regulator [Enterococcus faecalis D6]
 gi|307278346|ref|ZP_07559424.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX0860]
 gi|21693347|gb|AAM75294.1|AF454824_91 EF0091 [Enterococcus faecalis]
 gi|29342643|gb|AAO80408.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933340|gb|AAS49390.1| response regulator [Enterococcus faecalis]
 gi|227075046|gb|EEI13009.1| response regulator [Enterococcus faecalis TX0104]
 gi|255966525|gb|EET97147.1| response regulator [Enterococcus faecalis T2]
 gi|256993963|gb|EEU81265.1| response regulator [Enterococcus faecalis D6]
 gi|306504986|gb|EFM74178.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX0860]
 gi|315027615|gb|EFT39547.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX2137]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  +   +E++L  E + + +   G + +   +   FD ++LDLGL DI G ++
Sbjct: 5   ILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDIDGIDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  ++  P+ I+S  ++ E+KV+ L  GADDY++KPF   EL+ARIR  +R     
Sbjct: 65  LKILR-KRMHLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRHQNVQ 123

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +SL V    DL ++ + + V  +G  IHLT  EY+++ L+  +    +  +  +  ++ 
Sbjct: 124 TESLTVVENKDLKIDFEKQLVYKKGQEIHLTKNEYRILALMFRQLGKVVAYQTLMTKVW- 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G    + + + V +  +RKK+ +      Y+ T  G GY LR++
Sbjct: 183 GPYSNDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRLRDH 226


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/238 (29%), Positives = 131/238 (55%), Gaps = 10/238 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++  + G +   +   +++  I+LDL L ++ G  V
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMDGITV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQVA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ LI    L ++ DA  V   G +++LT KEY+++  L+   N    +E  
Sbjct: 124 TAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + +E+ +
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEIKSNNESTQ 241


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++D+K ++  ++  L  E + VY    GE+ +E     E D ++LDL L  + G EV 
Sbjct: 1   MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR     
Sbjct: 61  REIR-KTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSV 119

Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 QS +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  L  
Sbjct: 120 KEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQT 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR
Sbjct: 180 VWGYDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYLR 224


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL +DD     S+   L+ E F       G + + L + +  D + LD+ +  + G+
Sbjct: 1   MTILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R A    PV  LS  S   D V GLQ GADD+I KPF K EL+ARIRA +RR  
Sbjct: 61  EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R +        DL V       E  G  I L+ +E  ++ELL  +    + ++  LN  
Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     PE + +D  I KLRK++    G    IETV G GY  R
Sbjct: 181 WGMDYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYRYR 224


>gi|145294404|ref|YP_001137225.1| hypothetical protein cgR_0359 [Corynebacterium glutamicum R]
 gi|140844324|dbj|BAF53323.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 222

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL EDD  +A  I   L  E F   +T+ G +        +FD ++LDLGL  + G +
Sbjct: 3   KILLAEDDAGIADFIVRGLIREGFECEITESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR  +++ P+ +L+  ++IED++R L+ GADDY+ KPF   EL+ARI+  +R ++ 
Sbjct: 63  ILEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK--LRLAKH 120

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQ       ++  GD+ ++L  + V + G    L+ +E  ++E L       L++   L
Sbjct: 121 TAQESPTDARVLRNGDVELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRAQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   +P   ++DV++  LRKK+     G + IETV G GY LR
Sbjct: 181 RLVWDMDWDPGSNVVDVYVRALRKKI-----GAHRIETVRGSGYRLR 222


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   +E  K +E       FD +ILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R        ++   D+++N     V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247


>gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 223

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+DD      +   L+ +   V     GE G+ +     + AI++D  +  +PG E 
Sbjct: 1   MLVIDDDARTRAFVAEGLRQQGHTVDEAGDGEAGLHMAMEGAYAAIVVDRMMPGLPGLEA 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           ++A+R   + TPV +L+ + S++D+V GL +GADDY+ KPF   EL AR++A+VRR    
Sbjct: 61  VQAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRPPLA 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +     DL V++ A      G  + LT  E++++E L+      +T+ M L  L+  
Sbjct: 121 EATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESLWGF 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +P   +ID  I +LR K+      +  I T+ G GYVL+
Sbjct: 181 HFDPRANLIDAHISRLRAKVDRGF-DQELIHTIRGVGYVLK 220


>gi|329297168|ref|ZP_08254504.1| DNA-binding transcriptional regulator PhoP [Plautia stali symbiont]
          Length = 222

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F +    D  ++DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLAVQLRDMGHQV---DAAEDAKEADYFLQEHIPDIALVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   I  P+ +L+     + KV  L++GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGMSLIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  +I      V+L  + + V    + LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGHASQIISMPPFQVDLSRRELTVNDAPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A      I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALHPTEVINTVRGQGY 218


>gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
 gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
          Length = 244

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   +  +LK   + V   D G++ + L      D I+LDLGL DI G  +
Sbjct: 7   VLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQCPDIILLDLGLPDIDGSSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           +R +R A  STP+ ++S  S+ ++KV  L  GADDYI+KPF   EL+ARIR  +R S R 
Sbjct: 67  IREVR-AWSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLRHSNRL 125

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +S +       G + ++   + + + G  IHLT  EY+++  L+      +T    L+
Sbjct: 126 YTESSLYIRPYQCGSMLLDFSKRILTIDGEEIHLTPIEYKIVAYLAQNSGKVITYAAILS 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +++    + + KI+ V +  +R+KL        YI T  G GY ++E+  D T
Sbjct: 186 NVWGPYADSDNKILRVNMANIRRKLEKDPAQPQYIYTEVGVGYRMKEDEFDIT 238


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGY 227


>gi|301632265|ref|XP_002945211.1| PREDICTED: phosphate regulon sensor protein phoR-like [Xenopus
           (Silurana) tropicalis]
          Length = 501

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/202 (36%), Positives = 116/202 (57%), Gaps = 1/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++    V  V    E  + L   +EFD +ILDLGL  + G
Sbjct: 139 MRILIAEDDQVLADGLLRTLRASGAVVDRVASGTEADMVLMMAHEFDLLILDLGLPKMHG 198

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VL+ LR    + PV IL+   S+E +V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 199 LDVLKRLRDRGSALPVLILTAADSVEKRVKGLDFGADDYMAKPFSLQELEARVRALTRRG 258

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++  G L  +     V + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 259 MGATSAIVKHGPLVYDQAGHVVSIDGKMVELSARELGLLEVLLQRVGRLVSKEQLVELLC 318

Query: 180 DGRDEPEVKIIDVFICKLRKKL 201
           +  +E     I+V++ +LRKK+
Sbjct: 319 EWGEEVSYNAIEVYVHRLRKKI 340


>gi|296161178|ref|ZP_06843987.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295888519|gb|EFG68328.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ +  +I   LK   + V +V D  +        +E D ++LDL L    G
Sbjct: 1   MRILLVEDDEMIGGAIVQALKDAAYAVDWVCD-ADSATGALIGHEHDVVLLDLNLPKRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR+LR      PV IL+   S++D++ GL +GADDY+ KPF   EL+ARIRA+ RR 
Sbjct: 60  IDVLRSLRAKGSKAPVIILTARDSLDDRIAGLDAGADDYLVKPFEIGELLARIRAVTRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  + + +G+L+++ +           +LTG+E+ ++  L ++  T L++      +Y
Sbjct: 120 GDHGDARMTSGNLTLDSNTHLAVYGDTECNLTGREFALLSALMMKPGTVLSRSELERKVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++ E   ++V I  +RKKL     G + I  V G G+++
Sbjct: 180 AWEEQVESNAVEVVIHGIRKKL-----GASVIRNVRGVGWLV 216


>gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
 gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
          Length = 232

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED++ +   I   LK  N+ +  T  G + IEL    +FD +I+D  L  + G E
Sbjct: 10  KILLIEDEENIRKIIAYDLKKANYEIVETGDGREAIELAGSNDFDVLIIDWMLPHVSGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  K  + + +L+      D +   + G DDYI+KPF+  EL+AR+ A ++R +G
Sbjct: 70  IVERLRERKNDSIMIMLTARDDETDILHAFEKGVDDYITKPFSPRELLARVNAHLKRRKG 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V GD+ ++L  +++ ++   + LT KE+ ++E     K   L+++  LN ++  
Sbjct: 130 REEPRLVFGDICMDLKRRSILLKEQELELTKKEFDLLEYFISNKEVVLSRDNILNEIWGF 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + +I+DV + KLR KL+N+      I+++ G GYV+ E
Sbjct: 190 DYDGDTRIVDVHVFKLRSKLANS---NIQIKSMRGIGYVIEE 228


>gi|120611930|ref|YP_971608.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590394|gb|ABM33834.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MRILL+EDD  L+ ++   L+     V +    ED         FDA++LD+ L   P  
Sbjct: 1   MRILLVEDDPVLSRTMAQGLERAGHRVELAQNVEDARHWWAVQPFDAVLLDINLPHGPQA 60

Query: 59  ------GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
                 G   LR+ R     TPV +LS   S E+++ GL +GADDY+ KP+  +E+ AR+
Sbjct: 61  RSGLGNGLAALRSARARGDRTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARL 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA+ RR+ G    L+  G L ++  A+   V    + L  +E++++  L       L+K 
Sbjct: 121 RALARRTTGSG-DLVTVGRLQLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKS 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                L DG +      ++ F+ +LR+KL   AG    I T+ G GY L E+A
Sbjct: 180 DLSQRLSDGGEALGDNALESFVSRLRRKL---AGSGAVIRTLRGLGYTLEEDA 229


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 14/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59
           I+++ED++ LA  +E  L+ E   V V   G   +E        E D I+LDL L ++ G
Sbjct: 4   IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R +R +KI TP+ +L+  S+  D+V GL+ GADDY++KPF+  EL AR+ AI+RR 
Sbjct: 64  LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122

Query: 119 ------SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 SR     + I  GDL+++  ++ V  +G  +HLT KE+ ++ LL+       ++
Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  L+ ++ G D   V + +D  I +LRKKL         I T+WG GY
Sbjct: 183 DYLLHRVW-GEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGY 230


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S    Q  +L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGY 228


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ TV G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234


>gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     +   I+V I  LR K++      +YI+T+WG G+
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  I L L+ + F V+V   G  G++  +     A++LD+GL  + G EV
Sbjct: 5   VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  ++      D++ GL+ GADDY++KPF+  ELVAR+R ++RRS   
Sbjct: 65  CRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGTG 124

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A  + ++  G++ V +D + V      + LT  E+ ++  L        +++  L+ ++ 
Sbjct: 125 APREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  + +DV + +LR KL +A    + I TV G GY
Sbjct: 185 YTASSGARTVDVHVAQLRAKLGDA----SPIRTVRGVGY 219


>gi|325676260|ref|ZP_08155939.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325552821|gb|EGD22504.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  +  S+   L+   F +   D G   +        DAI+LD+ +  + G  
Sbjct: 9   RILLVDDDPKVLSSLTRGLRLSGFELDTADDGASALRAVSESRPDAIVLDVNMPVLDGVS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV-ARIRAIVRRSR 120
           V+ ALR      P+C+LS  S++ D++ GL++GADDY++KPF   ELV      + R  R
Sbjct: 69  VVTALRAMGNDVPICVLSARSTVGDRIAGLEAGADDYLTKPFELGELVARLRALLRRAPR 128

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  VT G L V+L  + V + G RI LT +E+ ++E+L+      L++   L  ++
Sbjct: 129 TPAPAGTVTVGPLEVDLPGRRVHMGGERIDLTKREFDLLEVLAENAGIVLSRVRLLELVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + +  ++DVF   LR+KL  A G    + TV G G+VLRE  
Sbjct: 189 GYDFDADTNVVDVFATYLRRKL-EAGGRPRVLHTVRGVGFVLREQP 233


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  LA  +   L+   ++V+    G   I L +    D IILDL L  I G +
Sbjct: 20  RILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGRD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V R +R    S P+ +L+   S +D V   Q GADDY+ KPF   EL ARI A++RRS  
Sbjct: 80  VCRLIRKWS-SAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +++  G L +  D   V  +G  +HL  +E+ ++  L  R     T++  L+ ++ 
Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVW- 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY--VLRENAKDET 229
           G+D  +++ +DV I ++R+ L     G N I TV G GY  V    A DET
Sbjct: 198 GQDVVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRFVPELAAMDET 248


>gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD   A  +   L      V     G++G+ +     +D +++D  L  + G 
Sbjct: 16  LRILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRMLPKLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR A I TP   L+ M SI+D+V+GL+SG DDY+ KPF   EL ARI ++ RR  
Sbjct: 76  TLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPP 135

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q++    DL ++L  +TV   G  + L   E++++E L       +T+ M L H++
Sbjct: 136 LQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +P+  I++  I +LR KL         I TV G GY
Sbjct: 196 NFHFDPKTNIVETHISRLRAKLDRGF-TPELIHTVRGVGY 234


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   ++  L  E +   +   G   ++L +   FD I+LD+ L  + G EV
Sbjct: 5   VLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R   I+TP+ ++S      DKV  L+ GADDY++KPF+  EL+AR++AI+RR+   
Sbjct: 65  CKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRRTEKD 124

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +V G L V  D   V      ++LT KEY+++  L    N TLT+E  
Sbjct: 125 QTDDNDLSDEQWVVNG-LRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      E +++DV I KLR+K+ +      +I+T+ G GY  +E  KDE
Sbjct: 184 LERIWGYDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKFKE-LKDE 236


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A +I   L+ + +   V   G +G ++      D +ILD+ L  I GFE
Sbjct: 3   KILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGINGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R++R  K + P+ +L+ +  IEDKV GL  GADDY+ KPF+  EL+AR+ A +RRS  
Sbjct: 63  VCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRSTL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +    +L+V+  ++ V+     I LT +E+ ++E L   +   + K    
Sbjct: 123 LEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDIT 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++   +P   +++V+I  LRKK+      K  I T  G GYVL+E
Sbjct: 183 EQVWNLNFDPTTNVVEVYINYLRKKIDRDFEPK-LIHTRPGMGYVLKE 229


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+ NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +LK E + V V   G+ G +L    ++D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  ELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +A   +    L ++++ +     G  I L+ KE Q+++         LT       
Sbjct: 121 ATETNAPVRLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIYQQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+   ++P   ++   +  LR+K+  A G    I TV+G+GY L E +
Sbjct: 181 LWQDEEQPSSNVLAALVRLLRRKI-EAPGEAPLIHTVYGKGYRLGEGS 227


>gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 227

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 128/224 (57%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + +E+ L++E +NV+    GE+ +++ +  E   I+LD+ +  + G EV
Sbjct: 4   ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +LS  S   DK++G+ +GADDY+ KPFN+ EL+ R++A++RRS   
Sbjct: 64  CRRVR-EKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYFL 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + V+ DL + +++  ++   H+       + LT +E++++ LL+  +    + E   
Sbjct: 123 NLKMQVSEDL-IRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V + +LR K+ +   G   I T+WG GY
Sbjct: 182 EKVWKERYYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGY 225


>gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC
           3083-94]
 gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC
           3083-94]
          Length = 219

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|209519930|ref|ZP_03268711.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499632|gb|EDZ99706.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 221

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  +I+  LK  ++       G+  +       +D ++LDL L    G 
Sbjct: 1   MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      P+ I++    ++D++RGL  GADDY+ KPF   EL+ARIRA++RR  
Sbjct: 61  EVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A   +  G LS++   K   V  G  + L+ +E+ +++ L +R    L++    + +Y
Sbjct: 121 GSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E E   ++  I  LR+KL     G   I+ V G G+++ ++A
Sbjct: 181 GWGEEVESNAVEYLIHALRRKL-----GSEVIKNVRGVGWMVSKDA 221


>gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 223

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A ++   L     +V     G  G+   +   +D  ++D  +  + G 
Sbjct: 1   MRILVVEDDAEAATAMVRGLSEAGHDVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R     TPV  LS +  +ED+V GL++GADDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  GMVETVRKGGDQTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRE 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV      I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +IDV I +LR K+      +  ++TV G GY L
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGF-DRAMLQTVRGAGYRL 221


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L  +   +DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V G+ + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD A++  + ++L +E F+ V VTD G   +E  +  + D I+LDL L  + G 
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTD-GALAVETAEREQPDLILLDLMLPGMNGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ RA+R    + P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +RR+ 
Sbjct: 63  DICRAIR-QDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTD 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL++++   TV+     I LT  E+ ++  L+ +     T+E  L  ++ 
Sbjct: 122 DEPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGY 220


>gi|15925069|ref|NP_372603.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927654|ref|NP_375187.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283732|ref|NP_646820.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49486873|ref|YP_044094.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650753|ref|YP_186887.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160950|ref|YP_494682.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195981|ref|YP_500794.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268531|ref|YP_001247474.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394595|ref|YP_001317270.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222196|ref|YP_001333018.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156980395|ref|YP_001442654.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161510292|ref|YP_001575951.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141601|ref|ZP_03566094.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315709|ref|ZP_04838922.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253731083|ref|ZP_04865248.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253733086|ref|ZP_04867251.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255006868|ref|ZP_05145469.2| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794530|ref|ZP_05643509.1| response regulator KdpE [Staphylococcus aureus A9781]
 gi|258411240|ref|ZP_05681518.1| two-component system response regulator KdpE [Staphylococcus aureus
           A9763]
 gi|258419757|ref|ZP_05682723.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258438064|ref|ZP_05689443.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|258441312|ref|ZP_05690797.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A8115]
 gi|258446995|ref|ZP_05695147.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258449772|ref|ZP_05697872.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A6224]
 gi|258453209|ref|ZP_05701200.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258453490|ref|ZP_05701469.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A5937]
 gi|262049249|ref|ZP_06022124.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus D30]
 gi|262052474|ref|ZP_06024672.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus 930918-3]
 gi|269203716|ref|YP_003282985.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282895229|ref|ZP_06303445.1| kdpE protein [Staphylococcus aureus A8117]
 gi|282923069|ref|ZP_06330754.1| kdpE protein [Staphylococcus aureus A9765]
 gi|282929309|ref|ZP_06336880.1| kdpE protein [Staphylococcus aureus A10102]
 gi|284025115|ref|ZP_06379513.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus 132]
 gi|294850565|ref|ZP_06791292.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A9754]
 gi|295407627|ref|ZP_06817418.1| two component transcriptional regulator [Staphylococcus aureus
           A8819]
 gi|296275710|ref|ZP_06858217.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297210101|ref|ZP_06926494.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297246624|ref|ZP_06930455.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A8796]
 gi|300910463|ref|ZP_07127915.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304379261|ref|ZP_07362000.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13701874|dbj|BAB43166.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247852|dbj|BAB58241.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21205174|dbj|BAB95868.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49245316|emb|CAG43791.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284939|gb|AAW37033.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126924|gb|ABD21438.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203539|gb|ABD31349.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741600|gb|ABQ49898.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947047|gb|ABR52983.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374996|dbj|BAF68256.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156722530|dbj|BAF78947.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|160369101|gb|ABX30072.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|253725210|gb|EES93939.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253728994|gb|EES97723.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257788502|gb|EEV26842.1| response regulator KdpE [Staphylococcus aureus A9781]
 gi|257839995|gb|EEV64461.1| two-component system response regulator KdpE [Staphylococcus aureus
           A9763]
 gi|257844239|gb|EEV68622.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257848481|gb|EEV72471.1| two component transcriptional regulator [Staphylococcus aureus
           A9299]
 gi|257852356|gb|EEV76281.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A8115]
 gi|257854228|gb|EEV77179.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257856946|gb|EEV79847.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A6224]
 gi|257859155|gb|EEV82012.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257864362|gb|EEV87111.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus A5937]
 gi|259159595|gb|EEW44641.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus 930918-3]
 gi|259162614|gb|EEW47181.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus D30]
 gi|262076006|gb|ACY11979.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941680|emb|CBI50087.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589119|gb|EFB94218.1| kdpE protein [Staphylococcus aureus A10102]
 gi|282593260|gb|EFB98257.1| kdpE protein [Staphylococcus aureus A9765]
 gi|282762419|gb|EFC02563.1| kdpE protein [Staphylococcus aureus A8117]
 gi|285817744|gb|ADC38231.1| DNA-binding response regulator KdpE [Staphylococcus aureus
           04-02981]
 gi|294822585|gb|EFG39027.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A9754]
 gi|294967525|gb|EFG43563.1| two component transcriptional regulator [Staphylococcus aureus
           A8819]
 gi|296885301|gb|EFH24241.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297176524|gb|EFH35790.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus A8796]
 gi|300888305|gb|EFK83496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302751961|gb|ADL66138.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304342120|gb|EFM08020.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312830431|emb|CBX35273.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128420|gb|EFT84429.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315196988|gb|EFU27330.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320140749|gb|EFW32601.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143724|gb|EFW35501.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314765|gb|AEB89178.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329724028|gb|EGG60552.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727776|gb|EGG64228.1| putative KDP operon transcriptional regulatory protein KdpE
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329729288|gb|EGG65696.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 231

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ H +++ L  + +NV   D         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++ IV   G LS++  +K+V +    +HLT  E+ ++ELLS  K   LT EM L  +Y
Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D+      +   L    + V V   G +G+ + + Y +D I+LD+ + ++ G+
Sbjct: 1   MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ L    I  PV  L+  S++ED+++GL+ GADDY+ KPF+  EL+ARIR  +RR  
Sbjct: 61  EVMKTLDAQNI--PVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGA 118

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  GDL ++   + VE  G RI LT KE+ +++L  L     +++ +  + ++
Sbjct: 119 NVKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   + +  ++DV + +LR+K+         I TV G GY
Sbjct: 179 DMNFDSDTNVVDVAVRRLRQKVDEPFATP-LIHTVHGVGY 217


>gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
 gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 117/200 (58%), Gaps = 8/200 (4%)

Query: 28  YVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           Y+ D    GE      K   F+ IILDLGL  + G  +L+++R     TPV IL+   S+
Sbjct: 25  YIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALLQSIRNDGNPTPVIILTARESV 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           ED+V+GL SGADDY+ KPF+  EL ARIRA+VRRS+G A +++   +++++  A +V V 
Sbjct: 85  EDRVKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRADAVLQYRNITLDPAAHSVFVD 144

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
              +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V I  LRKKL+  
Sbjct: 145 DVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEVHIHNLRKKLN-- 202

Query: 205 AGGKNYIETVWGRGYVLREN 224
               N+I T+ G GY+  +N
Sbjct: 203 ---ANFIRTIRGVGYMAEKN 219


>gi|227554660|ref|ZP_03984707.1| response regulator [Enterococcus faecalis HH22]
 gi|307271364|ref|ZP_07552641.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX0855]
 gi|227176160|gb|EEI57132.1| response regulator [Enterococcus faecalis HH22]
 gi|306511950|gb|EFM80943.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX0855]
 gi|315167672|gb|EFU11689.1| putative KDP operon transcriptional regulatory protein KdpE
           [Enterococcus faecalis TX1341]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  +   +E++L  E + + +   G + +   +   FD ++LDLGL DI G ++
Sbjct: 10  ILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDIDGIDL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  ++  P+ I+S  ++ E+KV+ L  GADDY++KPF   EL+ARIR  +R     
Sbjct: 70  LKILR-KRMHLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRHQNVQ 128

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +SL V    DL ++ + + V  +G  IHLT  EY+++ L+  +    +  +  +  ++ 
Sbjct: 129 TESLTVVENKDLKIDFEKQLVYKKGQEIHLTKNEYRILALMFRQLGKVVAYQTLMTKVW- 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G    + + + V +  +RKK+ +      Y+ T  G GY LR++
Sbjct: 188 GPYSNDSQTLRVNMSNIRKKIESNTLKPEYLITEIGVGYRLRDH 231


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           ++IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 12  VKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 71

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 72  IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 130

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 131 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG++ I+TVWG GY
Sbjct: 191 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGY 235


>gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVL 219


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  LA  ++  L  E +   V   G + +EL +  +   +ILD+ +  + G E
Sbjct: 5   KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+ + P+ +LS   +  DK+ GL  GADDYI KPF+  E+VAR++A +RR + 
Sbjct: 65  VCRRIR-AESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A       L+    L +++      + G  + LT KE++++  L+L  N  LT+E    
Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   +  ++  + V I KLR+K+ +      +I+TVWG GY     AK
Sbjct: 184 NVWGFNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFSGGAK 233


>gi|257094853|ref|YP_003168494.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047377|gb|ACV36565.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 219

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/181 (39%), Positives = 103/181 (56%), Gaps = 5/181 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           +DA+++D  L D  G   LRA R A+ STP  +L+    + D+V+GL SGADDY+ KPF 
Sbjct: 44  YDALLVDWQLPDGSGLAWLRARRSARDSTPALMLTARDLLSDRVQGLDSGADDYLVKPFA 103

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
            EEL AR+RA+ RRS G A S +  G + V+L A++  + G RI LTG+E+ ++E L LR
Sbjct: 104 PEELSARLRAVCRRSAGGAASRLSFGRVEVDLTARSAWLAGQRIELTGREWSILEALVLR 163

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + K      +     E     I+V +  LR+KL     G + +ETV G GY +   
Sbjct: 164 AGRIVPKADLERLVLGFEAELASNAIEVHVSGLRRKL-----GFDLVETVRGLGYRIAAQ 218

Query: 225 A 225
           A
Sbjct: 219 A 219


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 126/237 (53%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+KA+   +E  LK   ++V     G     +    ++D I+LDL L  + G E
Sbjct: 9   KILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +I TP+ IL+      DK+ GL+ GADDY++KPF+  E++ARI+AI RR   
Sbjct: 69  ITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRITS 128

Query: 119 ---SRGHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                G +Q   V  +       +V+L   +V   G R+ LT KE++++     R    L
Sbjct: 129 SSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRVL 188

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++E  LN ++      + +++D+ +  LR+KL +      YI+T  G GY    +AK
Sbjct: 189 SREKLLNGVWGYDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFNGDAK 245


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD A+  S+   L    +++ +   GE+ +   +    D +ILD+ +  + G 
Sbjct: 1   MKILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR     TP+ +L+   S+ ++V GL +GADDY++KPF  EEL+AR R++VRR+ 
Sbjct: 61  EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A        ++   DL ++   + V   G +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LR+K + A G    I+TV G GYVLRE A 
Sbjct: 181 LEDVW-GYDFPTSGNALEVYIGYLRRK-TEADGEPRLIQTVRGVGYVLRETAP 231


>gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 230

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 130/229 (56%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPG 59
           +IL+IED+K LA  +EL LK E +   V   G  G+E  + +   +D I+LDL L ++ G
Sbjct: 3   KILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPELNG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V R +R    + P+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR 
Sbjct: 63  IDVCRRIRQVS-NVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRI 121

Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +      Q+ +   DL+V  + + V      I LT +EY+++  L    N  L +++
Sbjct: 122 EIESEQNITKQTTVTYRDLTVEKENRVVRRGDEVIELTKREYELLLELMENVNVVLARDV 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 LLNKVWGYETEVETNVVDVYIRYLRNKI-DVPNVDSYIQTVRGTGYVMR 229


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 133/219 (60%), Gaps = 8/219 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E+ LN ++ 
Sbjct: 120 KPSSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +D  I  LR+KL +    ++YI+TV G GY
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211


>gi|320107016|ref|YP_004182606.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925537|gb|ADV82612.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 246

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+AL   +E  LK E   V     G+  ++    +  D ++LDLGL    G 
Sbjct: 1   MRVLVVEDDRALGLFLERGLKLEGHEVAWVGDGDAAVDYVMEHRLDLMVLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+AL+       + +L+G   IED++  L  GADD + KPF+  EL+AR RA+ RR  
Sbjct: 61  DVLQALQGLHGGMAILVLTGRVGIEDRISSLNLGADDCMMKPFSFHELIARCRALERRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DL+++   + V+  G  + LT KE+ ++E L L  +  ++++  L  ++ 
Sbjct: 121 FPVDSVLRHDDLTMDRMHRKVQRGGEPVDLTVKEFALLEYLLLHHDRCVSRKELLAKVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKL----SNAAGGKNYIETVWGRGYVLR 222
              E    ++DV++  LRKKL    ++  G  + IETV G GY LR
Sbjct: 181 MAPEAGTNVVDVYVNYLRKKLEPKVASLFGVSSLIETVRGEGYRLR 226


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A   +  L+  NF V +   GE G++      +D  ILDL L  I GFE
Sbjct: 3   RILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +++      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  LCKRIREVK-NVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             QS  +  D      L ++  ++ V + G     T KE+ ++  L+   N   +KE   
Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+      ++  + V + K+R+K+        YIET+WG GY  +
Sbjct: 182 ETLWGEESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRFK 228


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239


>gi|50955426|ref|YP_062714.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951908|gb|AAT89609.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 220

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L  + F V V   G   ++  +   FD ++LD  L ++ G 
Sbjct: 1   MRVLVVEDEPDLAETLREALTVDGFVVDVAGDGRQALDFLETQPFDLVVLDRDLPEVSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L        + +L+    + D+VRGL+ GADDY+ KPF   ELVAR+RA+ RRS 
Sbjct: 61  EVCRLLVERGSIVRILMLTASVDLADRVRGLELGADDYLVKPFAYAELVARLRALARRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S++V G L V++  +  +V+G  + L  KE+ ++E L+L     LT E  L   + 
Sbjct: 121 RAAGSVVVVGALRVDVTRRIADVEGFPVALMPKEFSVLEALALHDGAGLTAERLLAMAWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E  V  + V +  LR+KL  A      IE+  G GY L
Sbjct: 181 EPYERTVGAVRVVVHSLRRKLGPAL----RIESAPGYGYRL 217


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 80  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 199 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 251


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            RI+++ED++ +   + L +++E F V     G+  ++L + Y  D +ILD+ L ++ G+
Sbjct: 4   FRIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R      P+ +L+      DK+ G   G DDY+ KPF+ +ELVAR++A+++RSR
Sbjct: 64  TVCRQIRQGS-QVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSR 122

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+A +   +I    LS+   ++ V +    I LT KE+ ++  L+       ++E  L+H
Sbjct: 123 GNANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +D  +  LR KL N      YI TVWG GY
Sbjct: 183 VWGYDFYGDSRTVDAHVKNLRSKLGNYG---RYIVTVWGVGY 221


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S  + Q  + +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGY 228


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 26  RILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 86  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 145

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR  A SL + G LS++   +     G  I LT +E+ ++   +       ++   
Sbjct: 146 LAKDSRIEAGSLRLAG-LSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDL 204

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 205 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 251


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   +   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + S PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRELR-QRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGD 121

Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           S G +   Q++++ G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 SSGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGY 225


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+    G   I+L      D ++LD+ L D+ GFE
Sbjct: 5   RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDLDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   I +PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 65  VTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTNH 124

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ D+  V   G  + L+  E++++  L L     L+K+  L+H+
Sbjct: 125 QIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-----SNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++ +I  LR+K+      + +  +  I T  G GY+LR+
Sbjct: 185 WDYDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYMLRK 234


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L+ NL+  TV      I+LTGKE ++++  +       TK 
Sbjct: 123 VLGSSNTAQEKTTLSFKG-LTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   L  ++   L +E F V +   G +G+       +DAI+LD+ L  + G+
Sbjct: 1   MRVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR AK  TPV +L+      D+  GL  GADDY++KPF+   L AR+ A++RR  
Sbjct: 61  DVCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++   +T    G  I LT +E+ ++E L   +   ++K+  L H++ 
Sbjct: 121 IPRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +++V+I  LR+K+      ++ IETV G GY L  + +
Sbjct: 181 EHFDLDPNVVEVYIGYLRRKIDTPFRVRS-IETVRGAGYRLAADGR 225


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  GD+ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  ++L  + E + V +   G  G++     ++D ++LD+ L  + G+E
Sbjct: 4   KILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMDGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VL+ +R      PV +L+    ++DKVRGL  GADDY++KPF+ EEL AR+RA +R R+ 
Sbjct: 64  VLKKIR-ENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++L    V  QG +I LT KE+ ++E L    N  L++E  L  ++ 
Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +  ++DV+I  LR K+ +    K  I T+ G GY LR+
Sbjct: 183 YDYYGDTNVVDVYIRYLRSKIDDPFDRK-LIHTIRGVGYSLRD 224


>gi|81428994|ref|YP_395994.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610636|emb|CAI55687.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E +   V   G  G+E     ++D+I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYGTEVHFNGRTGLEAALNEDWDSILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I
Sbjct: 63  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDI 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   DL+V  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 EGEHNAAKQTTVTYRDLTVEKENRIVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 182 SKVWGYDSDVETNVVDVYIRYLRNKI-DRTGEQSYIQTVRGTGYVMR 227


>gi|163813913|ref|ZP_02205307.1| hypothetical protein COPEUT_00066 [Coprococcus eutactus ATCC 27759]
 gi|158450783|gb|EDP27778.1| hypothetical protein COPEUT_00066 [Coprococcus eutactus ATCC 27759]
          Length = 233

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   LK+ ++     + G   I     +  D ++LDLGL DI G +V
Sbjct: 6   VLVVEDDRPVRNLIVTTLKAHDYRYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           + ++R +  + P+ ++S  S  +DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G A S +   G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QASGDANSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + VF+  LRKKL     G  YI+T  G GY
Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLEPQKDGPQYIQTHIGVGY 227


>gi|300779477|ref|ZP_07089335.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300504987|gb|EFK36127.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED K LA +I   LK EN+        ++ I   + Y +D I+LDL L    G 
Sbjct: 1   MKILIIEDQKELAENISSYLKGENYVCEFASDYQEAIFKTEEYNYDCILLDLMLPSGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR       V I+S   +IEDK+ GL+ GADDY++KPF+  EL ARI +++RR  
Sbjct: 61  SILENLRSRSKQDGVIIISAKDAIEDKIDGLKLGADDYLAKPFHLSELGARIYSVIRRKH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             + + I   ++ ++L AKTV V    + LT KE+ ++  L   KN  ++K     HL  
Sbjct: 121 FGSTNGIYVNEIYIDLLAKTVRVNSLLLTLTRKEFDLLLFLVGNKNKNISKVAIAEHLSG 180

Query: 180 ---DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  D  +   I   +  L+KKL+  AG K+YI+T +G GY
Sbjct: 181 EMADMMDNHD--FIYSHLKNLKKKLTE-AGCKDYIKTTYGMGY 220


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE+ +E  +  + D IILDL L  + G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVR-AKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRE-A 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         I  GD++++ +A TV  +G  I+LT +E++++  L+      + +E 
Sbjct: 122 TAQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  ++D ++LD+ L   
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGLHQAETEDYDLLVLDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+ M  + D+V+GL+ GADDY++KPF+  EL ARI++++R
Sbjct: 58  DGWTLLQNLRRSK-STPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 117 RGQPRESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     +   I+V I  LR K++      +YI+T+WG G+
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226


>gi|313683188|ref|YP_004060926.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156048|gb|ADR34726.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 220

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+I+D++ L +++  +L+  +++V +     +G       ++D I+LD  L D  G 
Sbjct: 1   MHLLIIDDNEELLYALRQLLRDAHYHVDIATTLSEGENFINQKKYDLILLDWILPDGNGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   I TPV + S    IEDKV  L  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  ELLIRLRYQNILTPVLLFSSKKEIEDKVEALDGGADDYLEKPFSNIELLARIRALLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  G LSV+  +++V++    + L+ KE++++E L L  NT LT+     HL  
Sbjct: 121 TQKQTHLKLGKLSVDFSSRSVQIDNTPVKLSAKEFELLEFLLLNANTVLTRYQISEHL-- 178

Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            RD  ++    I+D  I  LRKKL       + I+TV G GY++
Sbjct: 179 SRDFDQIATSNIVDAHIKNLRKKLD----ADDLIQTVRGVGYMI 218


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +EL L  E + V     G  G++     +FD ++LD+ L  + G E
Sbjct: 4   KILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R   +  PV +L+   ++ DKV GL +GADDY++KPF  EEL+ARIR  ++R RG
Sbjct: 64  VLRRIRKESV-VPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKR-RG 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H   + + G + ++ D   V V G  + LT +E++++  L   K+  + +E  L+ 
Sbjct: 122 TVEVHTHRIEIRG-VCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       E  IIDV++  LR K+ +  G K  I TV G GYV+RE
Sbjct: 181 VCGYDYLGETNIIDVYVRYLRTKIDDRFGVK-LITTVRGVGYVIRE 225


>gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
 gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 230

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V   + G DG  L     +D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR A  + P   L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++R  R
Sbjct: 61  KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLR--R 118

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G    L+      DL ++L  +     G R+ LT KE+ ++E L   K   L + +  + 
Sbjct: 119 GIPSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D     +  +IDV I +LR K+ +    K  I T+ G GYVL +
Sbjct: 179 IWDINFNSDTNVIDVAIRRLRSKMDDDYEPK-LISTIRGVGYVLED 223


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + +        I   DL +  +      Q  ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGNE 238


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S  + Q  + +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGY 228


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E    +E ++V VT  G++ + L      D +ILD  +    G E
Sbjct: 15  KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR   A  S P+ +L+   + +D++RGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 75  VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRI 134

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDL+++  A  V  +G  + L   EY++++          ++   L+ +
Sbjct: 135 RPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGV 194

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK +    G K+ + TV   GY L
Sbjct: 195 WGTESDIELRTVDVHIRRLRKAI-EIEGAKDPVRTVRSAGYSL 236


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL L  E + V V   G   +   +  + D +ILD  L  + G E+
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIED--KVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      PV +L+    + D  +V GL +GADDY+ KPF+ EEL+AR+RA +RR++
Sbjct: 64  CRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A  ++   DLS+N   + V  +G R I LT KE+ ++E L       +T++  L  +
Sbjct: 124 DADAGDILQFEDLSLNRRTREV-FRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  II+V+I  LR KL      K  I+TV G GYVLRE
Sbjct: 183 WDYDFIGDSNIIEVYIRYLRLKLET-NNEKRLIQTVRGVGYVLRE 226


>gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
 gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +    K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVL 219


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A+ + + L+ E + V  +  G +G+ L +   +DA++LDL L  + G E
Sbjct: 25  RILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGLE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 85  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEA 144

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A SL + G L+++  A+   V G R+ LT +E+ ++   +   +   ++   
Sbjct: 145 MARDVRADAGSLELAG-LAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDL 203

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++  + E     ++  I +LR K+         I TVW RGY
Sbjct: 204 LNAVWGYQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGY 248


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L +E F V     GE  +   +   +D +ILD+ L  I G+E
Sbjct: 9   RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R  KIS  P+ +L+      D+V GL+ GADDYI KPF+  E+VAR++A++RR+R
Sbjct: 69  VCREIR--KISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRAR 126

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     IV G++ +  +A+TV V G  + LT KE+ ++  L+        +E  L+ +
Sbjct: 127 KSSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +D  + +LR+KL N AG    I TVWG GY L
Sbjct: 187 WGYDFYGDSRTVDTHVARLREKL-NQAGAPPLIATVWGVGYKL 228


>gi|229032736|ref|ZP_04188696.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728563|gb|EEL79579.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E
Sbjct: 3   QVLVIKNERSFAKKIVSGLTQEGYFILKLHNENQGLNIVYEQDWDIIILDWDSLSISGPE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RR+  
Sbjct: 63  ICRQIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRTNY 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   +     DL V+  +  V+     + LT +EY ++  L   KNT L++EM LN +
Sbjct: 122 IQQNETNFFQFKDLFVDTSSNIVKKGSENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 182 WGYNVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 225


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
 gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia
           rohdei ATCC 43380]
          Length = 223

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY    N
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLQAEHEGE-VITTIRGQGYRFDTN 223


>gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 227

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK  A  +   L+           GE+G+E     ++D +I+D  L    G 
Sbjct: 1   MRILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ ALR A   TPV ILS +  ++D+V GL++G DDY+ KPF   EL+ARI A+ RR +
Sbjct: 61  SVIEALRKAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +++    DL ++         G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV I +LR K+      +  + T+ G GY +R+ A
Sbjct: 181 WEYHFDPQTNVIDVHISRLRAKIDKDF-DRPLLHTIRGAGYSIRDAA 226


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +++ LK+E+F ++  + G+   E+ +  + D +ILDL L DI G  
Sbjct: 3   KILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDINGLN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R  K   P+ +++  ++ +DK+ GL  GADDYI+KPFN  E++AR++A +RR + 
Sbjct: 63  ICKSIR-TKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +     S I    L ++  ++   + G  + LT  E+ ++E+L L +   L+ E   +
Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181

Query: 177 HLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  D         + V I  LR+K+  +     YI+TVWG GY++
Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYII 227


>gi|326797323|ref|YP_004315143.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326548087|gb|ADZ93307.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 221

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +++H I   L +   +  + D GED ++L K   FD I+LD  +  I G 
Sbjct: 1   MRILIVEDDASVSHWISSKLHTSGHSCKLVDNGEDALKLIKEEVFDVILLDRVIPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L   +   PV ILS      D++ GL++GADDY+ KPF+  EL+ R+  +  R++
Sbjct: 61  QLL-GLLANESHPPVLILSANDQTSDRIEGLRAGADDYLGKPFDFAELLLRLERLYCRTK 119

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A S  I   D+ +NL+   V   GHR+ LT KE++++ +L+     T+T+ M L   +
Sbjct: 120 QVASSNFIKIKDMIINLERHEVTRSGHRVDLTNKEFKLLYVLAEHPGQTVTRSMLLEKAW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVL 221
               +P+  ++DV + KLR KL    G KN  I T+   GY L
Sbjct: 180 GYHFDPQTNVLDVHLSKLRNKLD--GGSKNPIIRTIRSVGYAL 220


>gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
 gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
          Length = 219

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDKA+ + +   LK +N+ V   + G + +E  K    D +ILD+ L +  G E+
Sbjct: 2   IYVVEDDKAIRNLVLYALKEKNYQVRGFEDGLNVVESLKNENVDLLILDIMLPEKDGIEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ +L+  +   DKV GL+SGADDYI+KPF+  EL++RI+A++RRS   
Sbjct: 62  LKEVREFS-DIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSEKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   ++ VN+  +T ++ G +I LT KE++M+ L        +T+E FL  ++   
Sbjct: 121 DGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL +A     +I+TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRNKLKSAGI---HIKTVRNLGYKLGE 218


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L+   + V +   G DG+ +     +D ++LD+ L  I G+
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR A+   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  EIMRALR-ARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL +++  + V  +G  I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 TRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I TV   GY  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDHPF-EKKLIHTVRSIGYTF 219


>gi|78062579|ref|YP_372487.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77970464|gb|ABB11843.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 231

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL  RE+   E
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFTDK-LLHTIRGMGYVLEAREDGDTE 228


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L    +++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L++NL+  TV      I LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 15/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59
           IL+++DD+ +   +   L+   F V       DG E  K +    +  ++LDL L    G
Sbjct: 7   ILIVDDDREIRDLLARFLERNQFRVTTA---RDGRETRKAWLAGHYQIVVLDLMLPGESG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R LR  + + P+ +L+ M    D++ GL+ GADDY+ KPFN  EL+ARIRA++RRS
Sbjct: 64  LELARWLR-GQANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVE--------VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               ++ +V    S++    T+E         +G  + LTG EY ++  L  R N  LT+
Sbjct: 123 SEAPETRVVGEPRSLHFSGWTLEQARRRLLNPEGTEVPLTGGEYDLLMALLDRANRVLTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +M  + L   +  P  + IDV I +LR+KL +       I+TV G GYVL
Sbjct: 183 DMLFDLLRGRQAGPFDRAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|149374330|ref|ZP_01892104.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
 gi|149361033|gb|EDM49483.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
          Length = 222

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  I + L  ENF V V   G++     +   + AIILD+GL D  G 
Sbjct: 1   MKVLIVEDNAVLAEKISVWLAKENFTVDVAQNGKEANFFVETSSYQAIILDIGLPDENGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++  R       + IL+  S+  ++V GL +GADDY+ KPF  +EL AR+ AI+RR  
Sbjct: 61  SLMQKWRSNGKDEAILILTARSNWTERVEGLNAGADDYLPKPFEFDELKARLSAIIRRKD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G     I      +N   +T+    H+   LT  EY++++      +   +++  +  LY
Sbjct: 121 GRTTDKIAVDGFLLNSTYRTLTTPDHKEFRLTATEYRLLQCFLRSPDRVFSQDDLVESLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    P   ++ V+I +LRK L     GK+ I+T+ G+GY
Sbjct: 181 NIERCPTRNVVQVYIARLRKIL-----GKSRIKTLRGQGY 215


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 126/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR + ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + +++   +L +++    VE     + LT +E+++++ L L K    ++EM L  +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +++ +DV I +LR+K+ +       I T  G GY
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K        N+I TVWG GY    N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + L+ EN+ +   + GE  +EL    E+D I+LDL +  + G 
Sbjct: 5   VKVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K STPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS 
Sbjct: 65  EVCKELRQKK-STPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ +IV   L+++ DA  V   G  ++LT KEY+++  LS   +    +E
Sbjct: 124 KTSYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
             L  ++      +++ +D  + +LR+KL+  +      I TVWG GY    N
Sbjct: 184 HLLKEVWHYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ T+ G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKFQEPKR 234


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 120 -----RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   A+   IV GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E FNV  +   +D +E  K  + D IILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALE--KLNDADLIILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ ++ G + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +DV I +LR+KL +    K  I+TVWG GY L E
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K LA  +   L    + V V   G +G+   +   +D I+LD+ L  + GF
Sbjct: 1   MKVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++LR LR  K   PV +LS    +ED+VRGL+ GADDY+ KPF+  EL+ARI A+ RR  
Sbjct: 61  QLLRELR-KKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRND 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  H  +++   DL ++L  + V      I LT KE+ +++L   +    L+++  
Sbjct: 120 PANLAEAHT-NIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              ++D        +++  + +LR K+      K  I TV G GYV+   A+D+ C
Sbjct: 179 AEQVWDINFNNNTNVVEAAVRRLRAKVDGPFESK-LIHTVRGMGYVI--EARDQEC 231


>gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED   LA  + L L  E       +  E   +  + +  D ++LDL L  + GFE
Sbjct: 4   RILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L   R    STPV I+S   + ED + GL  GAD+YI+KPF+   LVAR+RA++RR   
Sbjct: 64  FLHKFRKTH-STPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   ++ +   GD +++L +  +   G RI L+ KEY ++  L       LT  + 
Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + ++      ++  + V+I +LRKK+        +IETV+G GY
Sbjct: 183 YDEVWKNA-YGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGY 226


>gi|323487407|ref|ZP_08092704.1| DNA-binding response regulator DltR [Clostridium symbiosum
           WAL-14163]
 gi|323399264|gb|EGA91665.1| DNA-binding response regulator DltR [Clostridium symbiosum
           WAL-14163]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+ L  +I++ L    ++  +   G DG        +D +I+D  L ++ G 
Sbjct: 1   MKILLIEDDEVLCKTIQMSLTKAGYDTEICHTGTDGFLYACSGAYDCLIIDRMLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ALR  KI TP    + +  + D++ GL +GADDYI+KP+  EEL+ARIRA+ RR  
Sbjct: 61  TLLQALRRRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRLG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  +   DL    + + +  Q   + L+ KE  ++E        TL +E+ L +++
Sbjct: 121 RIEEECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E   +D +I  LR++L         I TV G GY L +N
Sbjct: 181 GASSEVEDGNLDNYIYFLRRRLRTLNAPVK-ITTVHGVGYRLEKN 224


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 129/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  +   I+  L    F + V   G   +++   ++FD +ILD+ L  + G 
Sbjct: 1   MAVLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    + P+ +L+ + S E+ V GL SGADDY+ KPF   EL  R++ ++RR+ 
Sbjct: 61  QLCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAG 120

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G++    +++    DL ++ DAK   V+   ++LT  EY+++E     +   L++   L 
Sbjct: 121 GNSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D        ++DV+I  LRKKL +    K YI+TV+G GY+++E+
Sbjct: 181 SVWDIDFNLGTNVVDVYINYLRKKLDSKNPAK-YIQTVFGMGYMMKES 227


>gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L+ +I+L L+   +       G++       Y +D IILD  L  + G 
Sbjct: 7   MRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL+ LR   I+TPV I + +  + D++ GL +GADDY+ KP+   EL+ARIRA+ RR  
Sbjct: 67  SVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPG 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +G A++     +++++ D + +      + L+ +E  ++E L       L + + L+
Sbjct: 127 RLEQGRAKTF---SNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++    E E   +D +I  LR++L  A G    I+TV G GY L +  
Sbjct: 184 YIWGPDSEVEDGNLDNYIYFLRRRL-KAVGTAAQIKTVHGIGYRLEDGG 231


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +   L+ E+F V  T  GE+ I L +    D ++LD  +  + G E
Sbjct: 5   RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++  +  V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSV 184

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD + E + +DV I +LRK + N A   + I TV   GY L
Sbjct: 185 W-GRDSDIEPRTVDVHIRRLRKAI-NLADAPDLIRTVRSAGYAL 226


>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ L   +E  L +E F V     G  G E      +  I+LD+ L  + GF+
Sbjct: 4   RILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVMLPGLNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR +R  + S PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI RR   
Sbjct: 64  VLRRIR-GESSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQST 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A++++V GDL ++   +TV +QG R + LT  E+ ++ELL  +    ++++  
Sbjct: 123 AQKDGTAAEAVLVVGDLVLDPGRRTV-LQGERSVVLTSIEFSVLELLLAQAGRVISRDDI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +     +     + IDV +  LR+KL  A  G   I++V G GY+
Sbjct: 182 CSQALGRQLNSFDRSIDVHVSSLRRKLGPAGDGSERIKSVRGIGYI 227


>gi|90411444|ref|ZP_01219455.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
 gi|90327657|gb|EAS44000.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  ++   +   + V     G+ G +L     +D I+LDL L    G 
Sbjct: 1   MHILVIEDDPHISGFLKQGFEELQYQVTCCGDGKQGYQLATMELYDLIVLDLMLPTWDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      P+ ILS   S+E++V GLQSGADDY+ KPF   EL AR + + RR  
Sbjct: 61  EVLRRIRGEGHQIPILILSARHSVEERVLGLQSGADDYLVKPFAFAELAARCQILSRRQV 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  + +   DL+++L  + +   GH I L  +E+ +++L   +     +K + L +++
Sbjct: 121 VSHNANQLSYHDLTLDLLTRKLCRDGHDILLKQREFALMQLFIQQPERVFSKTVILENIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +P+  ++DV +C+LR ++ +       I T+ G GYVL+
Sbjct: 181 GFQFDPQTNVVDVLVCRLRAQV-DKGFEMPLIHTIRGVGYVLK 222


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 240


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/223 (37%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE G+        D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAVN-DSVDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  K  TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+  H
Sbjct: 63  LKKLR-EKWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGNH 121

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            QS    +I   DL +    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 TQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL   + GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224


>gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK+ ++     + G   I     +  D ++LDLGL D+ G EV
Sbjct: 6   ILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHNPDIVLLDLGLPDMEGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDYI+KPF+ EEL+ARIR   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAVM 124

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G     S+   G L ++  A    ++G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QSGEQLESSVFENGGLKIDYTAGCTYLKGEELHLTPIEYKLLCLLSRNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + +V  + VF+  LRKKL     G  YI+T  G GY
Sbjct: 185 QIWGRCSDNDVASLRVFMATLRKKLEPEKNGVQYIQTHIGIGY 227


>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
 gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 11/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+K L   +   +K     V V   GE+GIE  K    D I+LD+ +  I GFEV
Sbjct: 7   ILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEKSKLNP-DLILLDIMMPKIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R   +  P+  LS   S  DK+RG   G DDYI+KPF   EL+A+I A +RR +  
Sbjct: 66  CQKIR-DNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREK-R 123

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +Q L        +  G+LS+++  + VEV G  I LT  EY+++ELL+L      TKE  
Sbjct: 124 SQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      +   +   I K+R+K S     + YI TVWG GY
Sbjct: 184 YEKVWGYDKGGDNTTVVEMIKKIRRKFSTIDDTEQYISTVWGIGY 228


>gi|119488832|ref|ZP_01621794.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119454993|gb|EAW36135.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 624

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/231 (37%), Positives = 126/231 (54%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+EDDK LA  +E  L  +    Y  DL  DG+   EL +   +D I+LDL L  +
Sbjct: 1   MRILLVEDDKGLAQGLEDALTHQR---YAVDLAWDGLMGWELAEALTYDLILLDLLLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G    + LR     TPV +++  +S   KV GL +GADDY+ KPF   EL+ARIRA++R
Sbjct: 58  DGINFCKRLRNQGDFTPVLLMTAQNSSSQKVEGLDAGADDYLVKPFEVSELLARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ-GHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R       ++  G  S+ LD K  +V  G + + LT KEY+++EL     +   ++   L
Sbjct: 118 RGNSALSPILEWG--SLRLDPKNCQVTYGDKLLKLTAKEYELLELFLRHPHRIFSQSALL 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +HL+   D P    +   I  LR+KL  +   ++ IETV+G GY L+  A 
Sbjct: 176 DHLWSFDDPPSESAVRTQIKGLRQKLKQSGAVRDLIETVYGLGYRLKSTAP 226



 Score = 49.3 bits (116), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PG 59
           R+L+++DD ALA  I  +  +      +    +    L      D ++LDL   D    G
Sbjct: 371 RLLIVDDDLALAEGIATVANTRKIYTEIAISPQQARTLIAENPLDIVLLDLSFPDSTEAG 430

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+L  L     S PV + +   S  D+V+  + G   ++ KP +  +++  I  ++  S
Sbjct: 431 FELLEELNSHSTSLPVIVFTAKESFADRVKVARLGGRGFLQKPISPSQVLDTITRVLSPS 490

Query: 120 RGHAQSLIV 128
                S+++
Sbjct: 491 SPKRASILI 499



 Score = 38.9 bits (89), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 10/124 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++++  +   I  +L+   F + + D  +   +  +    + +ILD  + D+ G E+
Sbjct: 497 ILIVDNEPEILDRIRSVLEPWGFYLILLDDPQQFWQTLEQSTPELLILDFAMPDLSGVEL 556

Query: 63  LRALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            + +R    + P      + ILS   + +   +   +GADDYI KP  + E +AR+   +
Sbjct: 557 CQVVR----NDPRWQDLSIIILSEERNRQIVEQVWNAGADDYIQKPLVEPEFIARVLNCL 612

Query: 117 RRSR 120
            R++
Sbjct: 613 ERNQ 616


>gi|118471523|ref|YP_887235.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172810|gb|ABK73706.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 255

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57
           +R+LL++D++AL + +++ L+ E    +V D+  D  +  + Y     D ++LD+ L D 
Sbjct: 30  IRVLLVDDERALTNLVQMALQYEG---WVIDVAHDAAQAVEKYRANLPDLLVLDIMLPDT 86

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R     TP   L+   S+ D+V GL +G DDY++KPF+ EELVAR+R ++R
Sbjct: 87  DGLGVLEQIRSFGTYTPTLFLTARDSVADRVEGLTAGGDDYMTKPFSLEELVARLRGLLR 146

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+      A   +  GDL+++  + TV      I LT  E+Q++ +L       L+++  
Sbjct: 147 RTAYLTPAADETLRVGDLTLDASSHTVTRGDTPIALTSTEFQLLRVLMRHPRKALSRDDI 206

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  +++        I+D+++  LRKK+    G +  I TV G GY+LR 
Sbjct: 207 LRQVWEYDFGGRTSIVDLYVSYLRKKIDT--GREPMIHTVRGVGYMLRP 253


>gi|24112549|ref|NP_707059.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 301]
 gi|26247378|ref|NP_753418.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           CFT073]
 gi|30062677|ref|NP_836848.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a
           str. 2457T]
 gi|74311689|ref|YP_310108.1| DNA-binding transcriptional regulator PhoP [Shigella sonnei Ss046]
 gi|82544383|ref|YP_408330.1| DNA-binding transcriptional regulator PhoP [Shigella boydii Sb227]
 gi|82777259|ref|YP_403608.1| DNA-binding transcriptional regulator PhoP [Shigella dysenteriae
           Sd197]
 gi|91210286|ref|YP_540272.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UTI89]
 gi|110641307|ref|YP_669037.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 536]
 gi|110805158|ref|YP_688678.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 5
           str. 8401]
 gi|117623315|ref|YP_852228.1| DNA-binding transcriptional regulator PhoP [Escherichia coli APEC
           O1]
 gi|157159002|ref|YP_001462399.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           E24377A]
 gi|170681232|ref|YP_001744047.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           SMS-3-5]
 gi|187730593|ref|YP_001879938.1| DNA-binding transcriptional regulator PhoP [Shigella boydii CDC
           3083-94]
 gi|191168321|ref|ZP_03030113.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|191173098|ref|ZP_03034631.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|193066242|ref|ZP_03047294.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194429552|ref|ZP_03062073.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194433627|ref|ZP_03065903.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194437080|ref|ZP_03069179.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|209918387|ref|YP_002292471.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SE11]
 gi|218553708|ref|YP_002386621.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI1]
 gi|218558012|ref|YP_002390925.1| DNA-binding transcriptional regulator PhoP [Escherichia coli S88]
 gi|218689083|ref|YP_002397295.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ED1a]
 gi|218694664|ref|YP_002402331.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 55989]
 gi|218700347|ref|YP_002407976.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI39]
 gi|218704604|ref|YP_002412123.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           UMN026]
 gi|227886513|ref|ZP_04004318.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|237706884|ref|ZP_04537365.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|253773846|ref|YP_003036677.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161237|ref|YP_003044345.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B str.
           REL606]
 gi|256018614|ref|ZP_05432479.1| DNA-binding transcriptional regulator PhoP [Shigella sp. D9]
 gi|260843446|ref|YP_003221224.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|260854812|ref|YP_003228703.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|260867559|ref|YP_003233961.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|293409496|ref|ZP_06653072.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|293414421|ref|ZP_06657070.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|293433418|ref|ZP_06661846.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|298380261|ref|ZP_06989866.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300816833|ref|ZP_07097053.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821086|ref|ZP_07101235.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300896841|ref|ZP_07115336.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300922660|ref|ZP_07138757.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300928312|ref|ZP_07143848.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300938702|ref|ZP_07153426.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300975596|ref|ZP_07173075.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300982385|ref|ZP_07176083.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301024584|ref|ZP_07188256.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301051080|ref|ZP_07197914.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|301328495|ref|ZP_07221561.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|306814020|ref|ZP_07448193.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|307310093|ref|ZP_07589743.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309788200|ref|ZP_07682806.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|309796524|ref|ZP_07690931.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331646389|ref|ZP_08347492.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331652181|ref|ZP_08353200.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331657194|ref|ZP_08358156.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331662541|ref|ZP_08363464.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331667531|ref|ZP_08368395.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331682636|ref|ZP_08383255.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332279682|ref|ZP_08392095.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|81724595|sp|Q83RR0|PHOP_SHIFL RecName: Full=Virulence transcriptional regulatory protein phoP
 gi|81741528|sp|Q8CXZ9|PHOP_ECOL6 RecName: Full=Transcriptional regulatory protein phoP
 gi|26107779|gb|AAN79978.1|AE016759_252 Transcriptional Regulatory protein phoP [Escherichia coli CFT073]
 gi|24051444|gb|AAN42766.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30040925|gb|AAP16655.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|73855166|gb|AAZ87873.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|81241407|gb|ABB62117.1| transcriptional regulatory protein [Shigella dysenteriae Sd197]
 gi|81245794|gb|ABB66502.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|91071860|gb|ABE06741.1| transcriptional regulatory protein [Escherichia coli UTI89]
 gi|110342899|gb|ABG69136.1| transcriptional regulatory protein PhoP [Escherichia coli 536]
 gi|110614706|gb|ABF03373.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401]
 gi|115512439|gb|ABJ00514.1| transcriptional regulatory protein PhoP [Escherichia coli APEC O1]
 gi|157081032|gb|ABV20740.1| DNA-binding response regulator PhoP [Escherichia coli E24377A]
 gi|170518950|gb|ACB17128.1| DNA-binding response regulator PhoP [Escherichia coli SMS-3-5]
 gi|187427585|gb|ACD06859.1| DNA-binding response regulator PhoP [Shigella boydii CDC 3083-94]
 gi|190901616|gb|EDV61373.1| DNA-binding response regulator PhoP [Escherichia coli B7A]
 gi|190906643|gb|EDV66249.1| DNA-binding response regulator PhoP [Escherichia coli F11]
 gi|192926091|gb|EDV80733.1| DNA-binding response regulator PhoP [Escherichia coli E22]
 gi|194412426|gb|EDX28727.1| DNA-binding response regulator PhoP [Escherichia coli B171]
 gi|194418056|gb|EDX34149.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012]
 gi|194424063|gb|EDX40051.1| DNA-binding response regulator PhoP [Escherichia coli 101-1]
 gi|195182817|dbj|BAG66393.1| two-component response regulator protein [Escherichia coli O111:H-]
 gi|209911646|dbj|BAG76720.1| two-component transcriptional regulator [Escherichia coli SE11]
 gi|218351396|emb|CAU97102.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli 55989]
 gi|218360476|emb|CAQ98030.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI1]
 gi|218364781|emb|CAR02471.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli S88]
 gi|218370333|emb|CAR18136.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli IAI39]
 gi|218426647|emb|CAR07475.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli ED1a]
 gi|218431701|emb|CAR12583.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli UMN026]
 gi|222032882|emb|CAP75622.1| Transcriptional regulatory protein phoP [Escherichia coli LF82]
 gi|226898094|gb|EEH84353.1| virulence transcriptional regulatory protein phoP [Escherichia sp.
           3_2_53FAA]
 gi|227836717|gb|EEJ47183.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972]
 gi|242376932|emb|CAQ31653.1| phoP [Escherichia coli BL21(DE3)]
 gi|253324890|gb|ACT29492.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973138|gb|ACT38809.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli B str. REL606]
 gi|253977352|gb|ACT43022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BL21(DE3)]
 gi|257753461|dbj|BAI24963.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O26:H11 str. 11368]
 gi|257758593|dbj|BAI30090.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O103:H2 str. 12009]
 gi|257763915|dbj|BAI35410.1| DNA-binding response regulator PhoP in two-component regulatory
           system with PhoQ [Escherichia coli O111:H- str. 11128]
 gi|281178240|dbj|BAI54570.1| two-component transcriptional regulator [Escherichia coli SE15]
 gi|281600563|gb|ADA73547.1| Virulence transcriptional regulatory protein phoP [Shigella
           flexneri 2002017]
 gi|291324237|gb|EFE63659.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088]
 gi|291434479|gb|EFF07452.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185]
 gi|291469964|gb|EFF12448.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354]
 gi|294490321|gb|ADE89077.1| DNA-binding response regulator PhoP [Escherichia coli IHE3034]
 gi|298279959|gb|EFI21467.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           FVEC1302]
 gi|300297252|gb|EFJ53637.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300307222|gb|EFJ61742.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300359323|gb|EFJ75193.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300396509|gb|EFJ80047.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300410259|gb|EFJ93797.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300421009|gb|EFK04320.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300456347|gb|EFK19840.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300463698|gb|EFK27191.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526385|gb|EFK47454.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300530607|gb|EFK51669.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300845102|gb|EFK72862.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|305852657|gb|EFM53105.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101]
 gi|306909811|gb|EFN40305.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307553131|gb|ADN45906.1| DNA-binding response regulator PhoP [Escherichia coli ABU 83972]
 gi|307627398|gb|ADN71702.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UM146]
 gi|308119836|gb|EFO57098.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308924052|gb|EFP69553.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617]
 gi|312945692|gb|ADR26519.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313650392|gb|EFS14799.1| transcriptional regulatory protein phoP [Shigella flexneri 2a str.
           2457T]
 gi|315060407|gb|ADT74734.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli W]
 gi|315287473|gb|EFU46884.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293102|gb|EFU52454.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296599|gb|EFU55894.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320175636|gb|EFW50728.1| Transcriptional regulatory protein PhoP [Shigella dysenteriae CDC
           74-1112]
 gi|320179170|gb|EFW54128.1| Transcriptional regulatory protein PhoP [Shigella boydii ATCC 9905]
 gi|320184387|gb|EFW59198.1| Transcriptional regulatory protein PhoP [Shigella flexneri CDC
           796-83]
 gi|320195867|gb|EFW70492.1| Transcriptional regulatory protein PhoP [Escherichia coli
           WV_060327]
 gi|320201026|gb|EFW75610.1| Transcriptional regulatory protein PhoP [Escherichia coli EC4100B]
 gi|323153124|gb|EFZ39389.1| transcriptional regulatory protein phoP [Escherichia coli EPECa14]
 gi|323163674|gb|EFZ49496.1| transcriptional regulatory protein phoP [Escherichia coli E128010]
 gi|323165638|gb|EFZ51425.1| transcriptional regulatory protein phoP [Shigella sonnei 53G]
 gi|323172493|gb|EFZ58130.1| transcriptional regulatory protein phoP [Escherichia coli LT-68]
 gi|323179334|gb|EFZ64904.1| transcriptional regulatory protein phoP [Escherichia coli 1180]
 gi|323185686|gb|EFZ71047.1| transcriptional regulatory protein phoP [Escherichia coli 1357]
 gi|323187618|gb|EFZ72925.1| transcriptional regulatory protein phoP [Escherichia coli RN587/1]
 gi|323379033|gb|ADX51301.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323947566|gb|EGB43570.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323953183|gb|EGB49049.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957956|gb|EGB53668.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323962729|gb|EGB58307.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323967069|gb|EGB62495.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323973280|gb|EGB68469.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323976499|gb|EGB71587.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005953|gb|EGB75172.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013223|gb|EGB82442.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324017498|gb|EGB86717.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324117299|gb|EGC11206.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|327253834|gb|EGE65463.1| transcriptional regulatory protein phoP [Escherichia coli STEC_7v]
 gi|331045141|gb|EGI17268.1| transcriptional regulatory protein PhoP [Escherichia coli M605]
 gi|331050459|gb|EGI22517.1| transcriptional regulatory protein PhoP [Escherichia coli M718]
 gi|331055442|gb|EGI27451.1| transcriptional regulatory protein PhoP [Escherichia coli TA206]
 gi|331060963|gb|EGI32927.1| transcriptional regulatory protein PhoP [Escherichia coli TA143]
 gi|331065116|gb|EGI37011.1| transcriptional regulatory protein PhoP [Escherichia coli TA271]
 gi|331080267|gb|EGI51446.1| transcriptional regulatory protein PhoP [Escherichia coli H299]
 gi|332089268|gb|EGI94374.1| transcriptional regulatory protein phoP [Shigella boydii 5216-82]
 gi|332092880|gb|EGI97948.1| transcriptional regulatory protein phoP [Shigella dysenteriae
           155-74]
 gi|332094417|gb|EGI99466.1| transcriptional regulatory protein phoP [Shigella boydii 3594-74]
 gi|332102034|gb|EGJ05380.1| DNA-binding response regulator in two-component system response
           regulatory system with PhoQ [Shigella sp. D9]
 gi|332758319|gb|EGJ88642.1| transcriptional regulatory protein phoP [Shigella flexneri 4343-70]
 gi|332767375|gb|EGJ97569.1| response regulator [Shigella flexneri 2930-71]
 gi|333004967|gb|EGK24487.1| transcriptional regulatory protein phoP [Shigella flexneri VA-6]
 gi|333005526|gb|EGK25044.1| transcriptional regulatory protein phoP [Shigella flexneri K-218]
 gi|333008362|gb|EGK27836.1| transcriptional regulatory protein phoP [Shigella flexneri K-272]
 gi|333019381|gb|EGK38664.1| transcriptional regulatory protein phoP [Shigella flexneri K-304]
 gi|333019849|gb|EGK39121.1| transcriptional regulatory protein phoP [Shigella flexneri K-227]
          Length = 223

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 71  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 130 TVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246


>gi|240142635|ref|YP_002967148.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|240012582|gb|ACS43807.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 220

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D         F  ++LDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLGLSGATVECVGTCADADAALATSRFGVVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  EVLRGLRRRDDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++     V V G  + ++ +E+ ++  L  R N   +K      LY 
Sbjct: 121 GRASAGLEHGGIRLDPAGLVVTVDGVNVPVSRREFMVLAALMERPNVLRSKTELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+     GK  IETV G GY +R +A
Sbjct: 181 WQEEVESNAVEVHVHNLRAKI-----GKQAIETVRGVGYRMRASA 220


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R  + + PV +LS      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +        A  +     L++N+      + G  + LT  E+ ++ +L  R+ + ++ E 
Sbjct: 124 YNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ +         I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|300784531|ref|YP_003764822.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794045|gb|ADJ44420.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 222

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ LA +I   L+ E   V V   G+DG E      +D ++LD  L  + G E+ 
Sbjct: 1   MVVEDEEPLADAIARGLRREGMAVDVALTGDDGHEKAAVTRYDVVLLDRDLPGMSGDELC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +  +   T V +L+  SS+ D+V GL  GADDY++KPF   ELVAR+RA+ RR+   A
Sbjct: 61  REIVASGELTRVLMLTASSSVSDRVEGLSLGADDYLAKPFAFPELVARVRALGRRATPAA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             L+  GD+ ++   +TV      + LT KE+ ++E+L     + ++ E  L  ++D   
Sbjct: 121 PPLLTAGDVELDPAKRTVRRASGPVELTRKEFGVLEVLLQAAGSVVSSEELLERVWDENA 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +P    + V +  LRKKL    G    IETV G GY + E
Sbjct: 181 DPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGYRVPE 216


>gi|284920956|emb|CBG34019.1| two-component response regulator [Escherichia coli 042]
          Length = 223

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNTLLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 132/229 (57%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HA--QSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + +    DL++N     V  +   + I L+ +E+++++ L L K   L+++  L  
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    Y G D     I+D++I  LR K+      K +I+TV G G++ +
Sbjct: 183 VWGFDYIGND----NILDLYIKYLRDKIDRPYERK-FIQTVRGIGFIFK 226


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 16/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57
           ILL+ED++ L+  +   L+ EN+ +    L  DG +    YE      + IILD  L  +
Sbjct: 5   ILLVEDEEGLSSYLTTELQFENYTII---LATDGKQALDTYESMRGQLNLIILDWMLPKL 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR +R      P+ +++    + DKV GL +GADDYI+KPF  EEL+ARIR ++R
Sbjct: 62  DGLEVLRRIR-QNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLR 120

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEM 173
            S+  A S  L    DL++N  ++ V      I LT +EY++  LL+L KN   T+T++ 
Sbjct: 121 HSQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYEL--LLTLIKNAGETMTRDE 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN ++    E +  ++DV+I  LR K+      K  I TV G GYVL  N +
Sbjct: 179 LLNLVWGVDFEGQPNVVDVYIRYLRNKVDRNF-KKTLIHTVRGVGYVLSANYQ 230


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL K  E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +A+R   +  PV  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +  G L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   + K+R K S     K YI TVWG GY
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  +L     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKDVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|262377611|ref|ZP_06070832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262307498|gb|EEY88640.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  + P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++R
Sbjct: 58  NGWNIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117

Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +    S I+   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 118 RGQQREDSNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRSKVDSNFTPK-LIQNIRGMGYVL 221


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGY 227


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + + V     G  G+ L    ++D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V   LR  A   TP+ +L+   +++D+++GL SGADDY+ KPF   ELVARI A++RR+
Sbjct: 61  QVCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRRT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDL  +LD   V   G ++ L    Y+++ +L  +    + +E   N L+
Sbjct: 121 QGSRKRQLQVGDLIYDLDTLNVSRAGKQLRLNPIGYKLLAILMQKSPAVVRREFLENALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G D PE   +   I +LR+ L      K  + T+ G GY L EN 
Sbjct: 181 -GDDLPESDSLRSHIHQLRQALDKPF-DKPLLHTIHGVGYRLAENP 224


>gi|218281202|ref|ZP_03487726.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989]
 gi|218217590|gb|EEC91128.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 116/201 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A++I  +L+ + + V +   G++G++L     +D  ILD+ L  + GF
Sbjct: 1   MNILVVDDEKNIAYAIAQILEEQKWQVTMAYDGQEGLDLALSGYYDVAILDIMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ +R  KI TP  +LS +  I DKV+GL  GADDY++KPF+  ELVARI A+ RR  
Sbjct: 61  EIVQKMRANKIETPTLLLSALDEIPDKVKGLNVGADDYMTKPFSAAELVARINALTRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DLS+ LD   +      IHL  KE+++++ L        +K+  +  ++ 
Sbjct: 121 EVIVHELKYEDLSLQLDTCELYCASQHIHLGYKEFEIMKQLMSHPEMITSKDDLIVSVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              +     ++V+I  LRKKL
Sbjct: 181 SESDAMDNNVEVYISFLRKKL 201


>gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVHEIQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217


>gi|78221908|ref|YP_383655.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193163|gb|ABB30930.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 220

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+EDD+ +  ++E  LK      Y  D   DGI   +  +  E+  +ILDLGL   
Sbjct: 1   MRILLVEDDRMIGEAVEQALKDA---AYAVDWVRDGISASDAVETGEYQLVILDLGLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R    +  V I++   +++D++RGL  GADDY+ KPF   EL+ARIRA+ R
Sbjct: 58  DGLGVLERMRGDGNNAAVLIVTARDALDDRIRGLDLGADDYLVKPFAVGELLARIRAVSR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A  L+  G ++++  +K       R  LT +E+ +++ L +R    L+++     
Sbjct: 118 RQTGSAAPLLTNGVVTLDPVSKEAVCGERRCRLTAREFSLLQALLVRPGAILSRDELETR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y   +E E   ++  I  +RKKL     G   I  V G G+++  N
Sbjct: 178 IYGWNEEVESNAVEFLIHSVRKKL-----GSESIRNVRGMGWMVDRN 219


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V     G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+ +
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A+   + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKIDT--GEKRLLHTLRGVGYVLRE 237


>gi|225571268|ref|ZP_03780264.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM
           15053]
 gi|225159744|gb|EEG72363.1| hypothetical protein CLOHYLEM_07365 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L+ +I   L+   + V     GE+ + L    E+D +ILDL L  + G 
Sbjct: 1   MKLLLVEDEEMLSRTIAKGLEILGYAVDRAYDGEEALYLYGLNEYDLMILDLNLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R       V ILS  +S+EDKV GL SG++DY++KPF  +EL ARIR+++RR+ 
Sbjct: 61  DVLRQIRKEDEEFRVLILSARNSLEDKVDGLDSGSNDYLTKPFEFKELEARIRSLLRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++  AK V     ++ LT KEY ++E L    +  +  E  + H +D
Sbjct: 121 TTRNRVLSCGCLKLDTAAKRVYCGEKQVELTRKEYALLEYLFHHNDRMIRAEELIEHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +         I  LRKKL +AAG + YI +  G GY L
Sbjct: 181 SETDLFSNSFRFHIHSLRKKL-DAAGAEGYIVSQRGLGYRL 220


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S   +I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I+TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGY 223


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  ++  L  ENF     + G  G++   F++ D IILD+ L  + G +
Sbjct: 3   KILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNGIQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+ + + E+   GL SGADDY+ KPF   EL AR+R+++RR   
Sbjct: 63  VCSKIRETS-QVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + +L    DL ++ D KTV   GH I LT  EY+++ L  +      ++   L  +
Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E    ++DV++  LRKKL    G    I TV G GYV+RE
Sbjct: 182 WGIDFESGTNVVDVYVNYLRKKLMQ-FGDSKLIHTVIGMGYVMRE 225


>gi|331697739|ref|YP_004333978.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326952428|gb|AEA26125.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 18/229 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  +A ++   L            G   ++       D ++LDLGL D+ G 
Sbjct: 1   MHILLVEDDDRVAAALRPALHRHGMTTTRLAQGRGAVD--HLSGVDVVLLDLGLPDVDGV 58

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V RA+R  ++S  PV ++S    ++D++ GL SGADDYI KP++  ELVAR+ A+ RR 
Sbjct: 59  DVCRAIR--QVSDVPVIVVSARGEVDDRILGLHSGADDYIVKPYDIGELVARVHAVCRR- 115

Query: 120 RGHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RG        G       + V+LD   V V G  + LT KE+Q++ LL+  + T  T+  
Sbjct: 116 RGTPSGAAAPGGEVAVDGVRVDLDRHIVTVDGAEVSLTRKEFQVLALLAAARGTVCTRSR 175

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  ++ GR  P   + +DV +  LR KL  A    + ++TV G GY L
Sbjct: 176 IVAEVW-GRSWPGANRTLDVHVATLRTKLGRA----DLVQTVRGVGYRL 219


>gi|225872896|ref|YP_002754353.1| TcrA [Acidobacterium capsulatum ATCC 51196]
 gi|225793949|gb|ACO34039.1| TcrA [Acidobacterium capsulatum ATCC 51196]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 115/221 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD+ +A  +E  L+ +   V VT  G DG       EFDA +LD+ L  + G 
Sbjct: 1   MNVLLIEDDRRIAQLVERGLREDGHRVSVTHDGADGARRMLSGEFDAALLDILLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R     TP+ +L+ + ++   +     GADDY+ KPF  E L+AR+ AI RR +
Sbjct: 61  EVLERVRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G L+++   + V   G +I LT K+  ++E+L  R     ++E  +   + 
Sbjct: 121 PQAPQMLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   +DV+I  LR KL + +  +  I T+ G GY  
Sbjct: 181 SASAVKENTLDVYIHSLRTKLGDRSENRPLIRTIHGTGYTF 221


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 130/227 (57%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ E + +     GE+ + L    E+D I+LDL +  + G E
Sbjct: 6   KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      D+V+G + GADDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCTELRKTK-ATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++ LIV   L+++ DA  V V G  I LT KEY+++  L+ + +   ++E 
Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY
Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGY 231


>gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 227

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V          ++ +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G++ I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224


>gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A  +EL L    F +     G  G+   +    D +ILDLGL D+ G E
Sbjct: 5   RILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGLPDLEGGE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  + A    P+ +L+   ++E KV  L  GADDY++KPF+  EL+ARI+  +R   G
Sbjct: 65  IARRAKQAG-EIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQVQLRHKEG 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    L V+L  + V  +   + L+ KE+ ++ LL+ R     ++E    HL+  
Sbjct: 124 GEVRQVDA--LLVHLGKRQVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGK 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             E    ++DV +  LR KL   AG   Y+ TV G GY LR+ ++
Sbjct: 182 PLEHSSNVVDVHVANLRAKLRE-AGAYGYLRTVRGVGYALRKPSE 225


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V     G+DG+   +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R  +  TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A  + V G L+++   +   V G  I LT +E+ ++   +       ++   
Sbjct: 126 LSRDTRSEAGRVDVGG-LTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 185 LNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           V   G+ G  L +   +D +I+D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY++KPF   EL+AR+  + RR  
Sbjct: 61  SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPEK 226


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ + +L    + + +ILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIKQIR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G   +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|207722091|ref|YP_002252529.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206587265|emb|CAQ17849.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V     G    E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAAEHLARQSHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R     TPV IL+   S++DKV GL +GADDY+ KPF   ELVAR++A++RR  
Sbjct: 61  TLLSQYRARDRGTPVLILTARDSLQDKVDGLNTGADDYLLKPFEMLELVARVQALLRRRG 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +    IV G L ++   + + V    + L+ +E+ ++ELL LR+   ++K    +
Sbjct: 121 DNGEPMPRPDIVVGRLRLSGTERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180

Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL          G D      I+V++ ++R+K+      +  I TV G GY+L+  A
Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234


>gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 124/243 (51%), Gaps = 23/243 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57
           MRIL++EDD  LA   E+++++     YV D+ +DG E     K  E+D ++LD+ L  +
Sbjct: 1   MRILVVEDDVQLA---EMLMEALTDRQYVVDIAQDGEEAWDCIKVLEYDLVVLDITLPKL 57

Query: 58  PGFEVLRALRVA----------------KISTPVCILSGMSSIEDKVRGLQSGADDYISK 101
            G    + LR                   I+ PV +L+   ++ DK+ GL +GADDY+ K
Sbjct: 58  DGVSFCQRLRSPMVGRSPSPTSRHTLSRNIAIPVLMLTARDTLGDKITGLDAGADDYMVK 117

Query: 102 PFNKEELVARIRAIVRR-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
           PF   EL+AR+RA++RR S   + S    G L +N     V      +HLT KE+ ++EL
Sbjct: 118 PFEMPELMARVRALLRRNSAATSSSDFGWGSLRLNSSTYEVTYADQPLHLTPKEFALLEL 177

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +       L++   +  ++   D P  + +   I  LR KL +     ++IETV G GY 
Sbjct: 178 MVSSGRRVLSRAGIIERIWSLDDPPSEETVKSHIKSLRYKLKDVGAADDFIETVHGLGYR 237

Query: 221 LRE 223
           L++
Sbjct: 238 LKQ 240


>gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
 gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A+ ++  L    F+V + + GEDG+ L     +  IILD+ L    G+
Sbjct: 1   MRILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS    + D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+Q++ L+  R    L++      ++ 
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +    K  I+T+ G GYVL E A
Sbjct: 181 INFDTDTNVVDVAIRRLRKKVDDPFPVK-LIQTIRGVGYVLDECA 224


>gi|157146166|ref|YP_001453485.1| DNA-binding transcriptional regulator PhoP [Citrobacter koseri ATCC
           BAA-895]
 gi|157083371|gb|ABV13049.1| hypothetical protein CKO_01922 [Citrobacter koseri ATCC BAA-895]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDLGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+VAR++A++R
Sbjct: 59  DGLSLIRRWRSNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVISIPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QARYPDDVITTVRGQGYLF 221


>gi|78047865|ref|YP_364040.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|121593755|ref|YP_985651.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|78036295|emb|CAJ23986.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|120605835|gb|ABM41575.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 222

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   I   L+    +V      +D   +     F A++LDLGL D  G 
Sbjct: 1   MRVLLVEDDELIGKGIVAGLRKHGISVQHVLTAQDAETVHAEETFHALVLDLGLPDRDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L ++R  +   PV IL+   +IE +++GL  GADDY+ KPF+  EL AR+ A+VRR++
Sbjct: 61  ELLASMRAVEPQLPVLILTARDAIEHRLKGLHDGADDYMVKPFDLRELAARLHALVRRTQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G L +  ++     QG  + L+ +E  ++  L+      +  +M    LY 
Sbjct: 121 GRAAQVISAGPLRLEPESGLAWFQGEAVTLSRREVDLLAHLANADGRWVPPDMLNERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  +R+KL     G   IETV G GY L
Sbjct: 181 LGEEIGSNALNVHIHNIRRKL-----GAEAIETVRGLGYRL 216


>gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +  S++  L+ + + + + D G+  + L     +D +ILD+ L D+ GF
Sbjct: 1   MRILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR    + P+  L+ +  ++ +V GL  G DDY++KPF   EL AR+RA++RR  
Sbjct: 61  DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   D++++     V     +I+LT KEY ++E L       +++ M   H+++
Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    +IDV++  +R+KL    G  + I T+ G GY L+E
Sbjct: 181 SDAENLSNVIDVYVRYVRRKLCE-QGESDVIHTIRGFGYQLKE 222


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 130/227 (57%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ E+++V   + GE  +++    E+D I+LDL +  I G E
Sbjct: 6   KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCEEIRKHK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L+++ DA  +   G  I+LT KEY+++  L+   +    +E 
Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  +++     +++ +D  I +LR+KL+  +    N I TVWG GY
Sbjct: 185 LLKDVWNYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGY 231


>gi|258653881|ref|YP_003203037.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557106|gb|ACV80048.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 220

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 123/219 (56%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED + LA +I   L++E   V V   G +G +      +D ++LD  L ++ G 
Sbjct: 1   MRVLVVEDAQRLADAIARGLRAEGMAVDVAYDGVEGHQKAMTTRYDVVVLDRDLPEMHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +  A  +T V +L+  + +ED+V GL  GADDY++KPF   ELVARIRA+ RRS 
Sbjct: 61  DVLTEIVSASDTTRVLMLTASAGVEDRVDGLSLGADDYLTKPFAFPELVARIRALGRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  GDL ++   +TV   G  + LT KE+ ++E+L     + ++ E  L  ++D
Sbjct: 121 PAVKPVLRAGDLELDPAKRTVTRSGRALELTRKEFGVLEVLLAAGGSVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LR+KL    G    I+TV G GY
Sbjct: 181 ENADPFTTTVRVTMMTLRRKL----GDPGIIDTVVGSGY 215


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + ++  + ++ D  +LD+ L D+ GF 
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     EDK+ GL  G DDY++KPF+ +E+VARIRA++RR+  
Sbjct: 69  VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ DA  V   G  + L+  E++++  L +  N  L+K   L+H+
Sbjct: 129 LDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++     +  I++ +I  LR+K+ +  G +  I T  G GY+LR   K
Sbjct: 189 WEYDFNGDASIVESYISYLRRKI-DVGGHEKMIHTKRGVGYMLRTADK 235


>gi|149917429|ref|ZP_01905927.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
 gi|149821766|gb|EDM81162.1| DNA-binding response regulator KdpE [Plesiocystis pacifica SIR-1]
          Length = 235

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+  +      +++S ++ +     G + + L   +  D +ILDLGL D  G E+
Sbjct: 9   ILVAEDEPQMRRFFRALIRSHDYRLLEAGTGREALALASSHRPDLLILDLGLPDRDGLEL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  LR A  S P+ ++S   S  DKVR L  GADDY++KPF   EL+AR+R  +R++   
Sbjct: 69  LVELR-AWTSMPIIVVSARGSELDKVRALDLGADDYLTKPFGSHELLARVRVALRQAARV 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  Q L   G+LSV+L  + VE+ G  + LT  EY+++  +       LT    L+ +
Sbjct: 128 GAGSEQPLFEVGELSVDLARRKVELGGQAVRLTPTEYKLLSTMIAHAGKVLTHRQLLSEV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +        + + V++ +LR+KL       + ++T  G GY L
Sbjct: 188 WGPAQASNTQYLRVYMAQLRRKLEADPARPSLLKTEIGVGYRL 230


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 129/229 (56%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  +   +   L+ E + V + + G   +EL    + D ++LD+ L ++ G 
Sbjct: 2   VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V + +R  +   + P+ +LS    + D+V GL+ GADDYI+KPF+  EL+ARI+A +R 
Sbjct: 62  DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121

Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R ++    ++   GDL +  ++  V ++G ++ LTGKE++++ +   R N   ++E  L
Sbjct: 122 ERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      + + +DV I  LR KL + +     IE+V G GY L  N
Sbjct: 182 QKVWGYTVSGDTRTVDVHISNLRSKLKSVSP---IIESVRGVGYRLAVN 227


>gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
 gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
           magna BVS033A4]
          Length = 220

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 116/217 (53%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   IE  LK   F+VY     ++ + L    +FD +I D+ + D+ GFE+
Sbjct: 5   ILVVDDDEQIRSVIETSLKRAQFSVYTCASAKETLSL-SLDQFDLMIFDVMMPDMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K+  P+  L+  S+  D   GL  G DDYI KPF   ELV+R++A +RR    
Sbjct: 64  CRNVR-EKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRREERV 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S +  GD+   L+AK ++++G  I  T  EY++ ELL+  K    ++E  L  +    
Sbjct: 123 HHSYLSFGDIRFLLNAKEIQIKGETIKFTKMEYEICELLARHKGQVFSREHILEQVGGFW 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E E   I   I  +RKK S      + I+T+WG GY
Sbjct: 183 TESESAAIVEHIKNIRKKFSTYQ--LDPIKTIWGVGY 217


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 126/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR + ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQS-MTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + +++   +L +++    VE     + LT +E+++++ L L K    ++EM L  +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +++ +DV I +LR+K+ +       I T  G GY
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGY 223


>gi|326797945|ref|YP_004315764.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326548709|gb|ADZ77094.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57
           M++L++ED+K LA+ +   LK      Y+ DL    ++G E     ++D I++DLGL D 
Sbjct: 1   MKVLIVEDEKTLAYEMADFLKKA---FYICDLAHTYQEGAEKIALNQYDFILIDLGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR  +         IL+   +++D++ GL  GADDY+SKPF   EL +R++AI R
Sbjct: 58  DGLDILRKAKKHNEEAAYIILTARGNLDDRIIGLDLGADDYLSKPFYLLELQSRMQAIAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       LI  GD  V+L  + +    + I L+ KE+ ++  L L KN  LT+     H
Sbjct: 118 RKFKLQDELIPVGDFRVDLPKRLILFNDNPIDLSRKEFDLLSYLLLHKNRVLTRMQLSEH 177

Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     D+ +   ID  I  +RKKL   A  + ++ETV G GY +R
Sbjct: 178 IWGSYAVDDNDSNYIDAHIKNIRKKLGQCASIE-WLETVRGVGYRIR 223


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A      L+   F V V + G+ G++     ++D +ILDL L    GF+
Sbjct: 3   KILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRDVK-NTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGY 225


>gi|16129093|ref|NP_415648.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|89107976|ref|AP_001756.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. W3110]
 gi|157160654|ref|YP_001457972.1| DNA-binding transcriptional regulator PhoP [Escherichia coli HS]
 gi|170020477|ref|YP_001725431.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ATCC
           8739]
 gi|170080781|ref|YP_001730101.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188494074|ref|ZP_03001344.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238900384|ref|YP_002926180.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|256023172|ref|ZP_05437037.1| DNA-binding transcriptional regulator PhoP [Escherichia sp.
           4_1_40B]
 gi|300906951|ref|ZP_07124623.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300917903|ref|ZP_07134536.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300949478|ref|ZP_07163476.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300955536|ref|ZP_07167898.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301029561|ref|ZP_07192639.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301306074|ref|ZP_07212152.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301644548|ref|ZP_07244541.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307137765|ref|ZP_07497121.1| DNA-binding transcriptional regulator PhoP [Escherichia coli H736]
 gi|312971266|ref|ZP_07785444.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|331641674|ref|ZP_08342809.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
 gi|130126|sp|P23836|PHOP_ECOLI RecName: Full=Transcriptional regulatory protein phoP
 gi|147254|gb|AAA24377.1| phoP [Escherichia coli]
 gi|216608|dbj|BAA14390.1| PhoP protein [Escherichia coli K-12]
 gi|1651558|dbj|BAA35952.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K12 substr. W3110]
 gi|1787375|gb|AAC74214.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. MG1655]
 gi|157066334|gb|ABV05589.1| DNA-binding response regulator PhoP [Escherichia coli HS]
 gi|169755405|gb|ACA78104.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169888616|gb|ACB02323.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli str. K-12 substr. DH10B]
 gi|188489273|gb|EDU64376.1| DNA-binding response regulator PhoP [Escherichia coli 53638]
 gi|238860868|gb|ACR62866.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli BW2952]
 gi|260449731|gb|ACX40153.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|299877556|gb|EFI85767.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300317575|gb|EFJ67359.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300401298|gb|EFJ84836.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300414893|gb|EFJ98203.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300451114|gb|EFK14734.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300838646|gb|EFK66406.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301077130|gb|EFK91936.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309701454|emb|CBJ00758.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310336468|gb|EFQ01654.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70]
 gi|315135762|dbj|BAJ42921.1| DNA-binding transcriptional regulator PhoP [Escherichia coli DH1]
 gi|315252615|gb|EFU32583.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315616012|gb|EFU96638.1| transcriptional regulatory protein phoP [Escherichia coli 3431]
 gi|323937870|gb|EGB34134.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323942600|gb|EGB38767.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|331038472|gb|EGI10692.1| transcriptional regulatory protein PhoP [Escherichia coli H736]
          Length = 223

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHIPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|300867327|ref|ZP_07111985.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300334681|emb|CBN57151.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 227

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  S+   L ++ + V     GE   +  + + +D I+ D+ L  + G 
Sbjct: 1   MRILLVEDDSQLIASLTEALVAQRYIVDSARDGESAWDKTQGFVYDLILTDVTLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR     +P+ +L+   +  DKV GL +GAD Y+ KPF  +EL+A+IRA++RR +
Sbjct: 61  GLCERLRDRGYLSPILMLTARDTSLDKVIGLDAGADVYMVKPFQLQELLAQIRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ +G+LS++  +  V  +   IHLT KE+ ++E L       L++   +  ++ 
Sbjct: 121 SGMSPILRSGNLSLDPASYEVIYERSPIHLTPKEFALLEALLRYGKRVLSRSAIIEQVWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ PE   I  +I  LR KL  A   K+ IETV G GY L+
Sbjct: 181 WQESPEEDTIKTYIKNLRAKLKAAGAPKDLIETVHGVGYRLK 222


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGY 227


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 131/229 (57%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V+    G++ +++ +  + D ++LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A++ I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR 231


>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 243

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 116/233 (49%), Gaps = 4/233 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I   L+ EN+ V   + GED +E  ++  FD IILD+ L  I GF V
Sbjct: 8   ILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFAV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV +L+  S   D++ GL  GADDY++KPFN  E + R+  ++RRS  +
Sbjct: 68  CREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSAWY 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +      GD  V L +   +     I LT  E +M+ L   ++   + ++  L  +
Sbjct: 128 RPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLESV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +    + E + +D FI +LRK          Y +TV G GY     A+ +  E
Sbjct: 188 WGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRFSREARGQRNE 240


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 129/238 (54%), Gaps = 10/238 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L LK E+F ++    G++   L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSS 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  +
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEVKSNDEPTK 241


>gi|329906568|ref|ZP_08274423.1| response regulator transcription regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547258|gb|EGF32107.1| response regulator transcription regulatory protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 222

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 127/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           M +LL EDD  LA  I   L+S    V V D G   +EL  K  E   ++LD+GL  I G
Sbjct: 1   MHVLLAEDDSVLADGIARALRSHGMVVDVVDNGS-AVELAIKHAEIAVLVLDIGLPGIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV+R LR+  +  PV +L+   +I+D+V G + GADDY+ KPF+  ELVAR++A+VRRS
Sbjct: 60  FEVVRRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L+++  A+   +    I  + +E+ ++E L  + +  ++K+  ++ + 
Sbjct: 120 APKPIELSI-GGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAIL 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              ++  +  ++V++ ++R K+   A     I T+ G GY+L   A 
Sbjct: 179 PWGEDLTLNAVEVYVSRIRLKI---APSNIVIRTIRGFGYLLEPVAP 222


>gi|161503675|ref|YP_001570787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865022|gb|ABX21645.1| hypothetical protein SARI_01759 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|219523852|gb|ACL14889.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Arizona]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIIDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +  PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 71  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 130 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246


>gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. W3110]
 gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB
 gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K12 substr. W3110]
 gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1]
          Length = 219

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L++++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     ++  L    F V +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A+   PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R + RR +
Sbjct: 61  GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++L  + V   G RI LT KE+ ++ELL  R+   L++    + ++D
Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKVDDPFEPK-LIRTVRGMGYVL 220


>gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 232

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 126/234 (53%), Gaps = 22/234 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DDK L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     GD S    A T+EV G R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGDNS----APTLEVDGLRLNPGRQEASFDDVVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++E     +   R  P  + ID+ I  LR+KL        + +T+ GRGY++
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDSLPWFKTLRGRGYLM 228


>gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G EV
Sbjct: 1   MLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGMDGIEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R A     V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R  
Sbjct: 61  CRRVR-AFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ ++
Sbjct: 120 VSAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     + +++DV I  LR+KL   A    YI+TV G GY + E 
Sbjct: 180 DPAWVGDERLVDVHIKNLRRKLD--ADPARYIDTVRGVGYRMAEQ 222


>gi|313637948|gb|EFS03257.1| response regulator ArlR [Listeria seeligeri FSL S4-171]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 129/219 (58%), Gaps = 6/219 (2%)

Query: 8   DDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR 67
           D+K LA  IEL L+ EN+   V + G  G+EL    E+DAI+LDL L  + G EV R +R
Sbjct: 4   DEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVEVCRRVR 63

Query: 68  VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLI 127
             K  TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+R+++RR     QS  
Sbjct: 64  QVK-QTPIIMITARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRSLLRRVENAEQSAK 122

Query: 128 VTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            T     +L V  + + V+     I LT +EY+++  L    N  LT+E+ LN ++    
Sbjct: 123 QTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNKVWGYET 182

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E E  ++DV++  LR K+ +    ++YI+TV G GYV+R
Sbjct: 183 EVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 220


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + I++    + D I+LD+ L DI GF V
Sbjct: 12  IVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGFTV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 72  TRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 131

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 132 VEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA----GGKNY-----IETVWGRGYVLRE 223
                +  I++ +I  LRKK+         G  +     I+T  G GY++RE
Sbjct: 192 YDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYIIRE 243


>gi|223984939|ref|ZP_03635042.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM
           12042]
 gi|223963108|gb|EEF67517.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM
           12042]
          Length = 222

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDDK +   +   L+S N+       G D + +     FD ++LDL L  + G E
Sbjct: 3   RILIAEDDKEICQILTDFLESYNYKTVCCFSGTDVLSVFNQESFDLVVLDLMLPYVSGEE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRS 119
           +L  +R  K S  P+ I+S    +  KV  L+ GADDY++KPFN EEL+ARI R ++R  
Sbjct: 63  ILCKIR--KFSDIPIIIVSAKDLVLTKVELLRLGADDYVTKPFNLEELLARIERCLIRNQ 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +  IV+GDL ++  +K+V +    + LT KEYQ++ELL    N   +K+     ++
Sbjct: 121 KTLPEMQIVSGDLVLDTQSKSVSIHDTILSLTAKEYQILELLMKYPNKVFSKQNLYEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     +  +++  I  LRKKL +       IET+WG GY
Sbjct: 181 NEAFARDNDVMNTHISNLRKKLGDEGWR---IETIWGLGY 217


>gi|206889389|ref|YP_002248264.1| cell cycle transcriptional regulator CtrA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741327|gb|ACI20384.1| cell cycle transcriptional regulator CtrA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 214

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIEDD+ L  +++  LK E    V++ D  +   +  K YEFD I++DL L    G
Sbjct: 1   MRILLIEDDRILGETLKDYLKIEAIETVWLYDERQLP-KTIKKYEFDVIVIDLILKFTSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E++ ALR A I TP+ + +   SI+DK      GADDY++KPF  +E V R++A+ RR 
Sbjct: 60  EEIIAALRKAGIETPILVTTAKKSIDDKETCFLRGADDYLTKPFEFKEFVLRLKALSRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  ++I  G+L VNLDAKT+    + I L+ K +++  LL  ++   +  E  LN+++
Sbjct: 120 --HIGNIINLGELIVNLDAKTIHKGNNEIKLSKKAWEVFILLLKKRGEIVDTETILNYIW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +D  + +I+  +I +LRK L + +     I T  GRGY L
Sbjct: 178 PDKDVGD-EIVRAYIKELRKVLPSDS-----IITYPGRGYKL 213


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ L   ++  L+ E + VY +  G  G+EL K    D ++LDL L ++ G E+
Sbjct: 10  VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R  +  TP+ +L+   S ++K+ GL  GADDY+ KP +  E++AR++ I+RR    
Sbjct: 70  ARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  Q  I+T G+++++  AK + ++G  I LT  E+ ++  L+L      ++E   + +
Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E + + ID  I  LR+K+        +I+TV+G GY
Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGY 229


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 68  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 16/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57
           ILL+ED++ L+  +   L+ EN+ +    L  DG +    YE      + IILD  L  +
Sbjct: 16  ILLVEDEEGLSSYLTTELQFENYTII---LATDGKQALDTYESMRGQLNLIILDWMLPKL 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR +R      P+ +++    + DKV GL +GADDYI+KPF  EEL+ARIR ++R
Sbjct: 73  DGLEVLRRIR-QNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLR 131

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT--TLTKEM 173
            S+  A S  L    DL++N  ++ V      I LT +EY++  LL+L KN   T+T++ 
Sbjct: 132 HSQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYEL--LLTLIKNAGETMTRDE 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN ++    E +  ++DV+I  LR K+      K  I TV G GYVL  N +
Sbjct: 190 LLNLVWGVDFEGQPNVVDVYIRYLRNKVDRNF-KKTLIHTVRGVGYVLSANYQ 241


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR +G
Sbjct: 63  VCRQLR-QRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR-QG 120

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + LI +    G + ++++   V V G ++ L  KE++++E+L       LT+   ++ 
Sbjct: 121 EPEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGY 222


>gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + ++     V   +  ++     +    D  I+DLGL    G 
Sbjct: 1   MRILVVEDNNLLRHHLSVQMRELGHQVDAAENAKEADFFVREQSPDIAIVDLGLPGEDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +I+ P+ +L+   S ++KV  L++GADDY++KPF+ EE++AR++A++RR+ 
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I       +L  + + V    I LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL N     + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQNEYPA-DVITTVRGQGY 218


>gi|269124222|ref|YP_003306799.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268315548|gb|ACZ01922.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L + I+  LK+  + V     GE+ +       +D +ILD+ L  + GF
Sbjct: 1   MKILLVEDEIDLNNIIKKYLKTSGYIVDSVFDGEEALFNLNEASYDLVILDVMLPKLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R       V +L+    +EDK++GL  GADDY+SKPF+ EEL ARIRAI+RR  
Sbjct: 61  EVLEKMRKKNNKAAVLMLTSKDQVEDKIKGLDLGADDYLSKPFDFEELAARIRAIIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S I   DL ++   KTV      I LTGKEY+++E L   K   ++++   +H+YD
Sbjct: 121 DNLSSEIKIHDLILDTMKKTVIRNNVNIDLTGKEYEILEYLMQNKERIVSRDQIKDHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV I  +RKK+ +  G K  I T  G GYV++EN
Sbjct: 181 FYYEGSSNVIDVLIKNIRKKI-DLEGSKQIIFTKKGLGYVVKEN 223


>gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
 gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 232

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++A+A  I+  L+ + + V V   G + ++      FD +ILDL L  I G 
Sbjct: 1   MRVLIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLMLPQIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      PV +L+   SI+D+VRGL SGADDY+ KPF  +EL+AR+RA+ RRS 
Sbjct: 61  TVCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRST 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ ++   DL ++   + V   G  I LT KEY ++E L       LT+ M   H++
Sbjct: 121 DAPKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +     +  +IDV+I  LR+K+ +    K  I+TV G GY L   A+ E
Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKIDDPFPVK-LIQTVRGAGYRLWYEAEHE 228


>gi|33594239|ref|NP_881883.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|33564314|emb|CAE43615.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|332383653|gb|AEE68500.1| two component response regulator [Bordetella pertussis CS]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +A  +   L    F             L    E+DA+++DL L D  G 
Sbjct: 1   MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R     TPV +L+   +++D+VRGL  GADD+++KPF  EEL AR+ A+VRRSR
Sbjct: 61  VLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G LS + +++   + G  + LT +E+  +  L  R    + K      ++ 
Sbjct: 121 GRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLTRSGYPVDKSQLFGKVFT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     I+V + +LRKKL+   G    I TV G GY+L
Sbjct: 181 HESEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML 218


>gi|295106491|emb|CBL04034.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+A++ +I   L S        D GE+G+   +   +D ++LD+ L  + G+
Sbjct: 1   MKILIIEDDRAISRAIAAALGSRYAFDQAFD-GEEGLFFAQQNVYDLVVLDIMLPALDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR   + TPV +L+  ++ +D+VRGLQ GADDY++KPF+++ELV R+ AI+RRS 
Sbjct: 60  GVLERLRADGMDTPVLMLTAKNARDDRVRGLQLGADDYLAKPFDRDELVLRVEAIIRRSM 119

Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  ++L   G   + LD  T    V G  + L GK+Y ++E L   +   ++K    + +
Sbjct: 120 G-VRTLDAFGFRGLTLDPNTRRAAVDGAPVVLKGKQYDVLEYLVSHEGQLVSKTQLFDRV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++    +++V++  LRK L    G   +++T+ G GYV  ++
Sbjct: 179 WGFMNDTSSNVVEVYVSALRKVL-KGHGYDRFLKTIRGAGYVWTDD 223


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L++NL+  TV      I LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 228

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E + + + V+I +LR KL + A    +I T  G GY  R
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFR 226


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + L L+ E + +     G   +E  K  E       FD ++LDL L
Sbjct: 20  RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    + P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI      ++S+N     V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 247


>gi|297154811|gb|ADI04523.1| CheY-like receiver domain-containing response regulator
           [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  L   ++  L++E F V       DG+       +D IILD+ +  + G+
Sbjct: 1   MRVLVMDDDTRLVELLQQGLRAEGFAVDAASDSLDGLAKAAADNYDVIILDVMMPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+  GL++GADDY++KPF+   L AR+ A++RR+R
Sbjct: 61  KVCAHLRSIGDNTPILMLTAKDGEYDEAEGLETGADDYLTKPFSFVVLTARLHALIRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q +   GDL ++   +     G  I LT +E+ ++ LL+   +  ++K   L+ ++D
Sbjct: 121 PERQVVQHFGDLEIDTGGRRCRRAGTDIALTPREFDVLALLTATPDIAISKAAILDRVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I++V +  LR+K+     G+  IETV G  Y LR + 
Sbjct: 181 SAYEGGPNIVEVHVSALRRKIDRPF-GRASIETVPGGAYRLRSDG 224


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S  + Q  + +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G+ G E+     +D +ILD  L    G 
Sbjct: 7   MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++ + +    QG  I L+ KE Q+++         LT    L 
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN--YIETVWGRGY 219
           HL++  + P   +I   I  LR+K+     GK    I TV+G+GY
Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKIEV---GKELPLIHTVYGKGY 228


>gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC,
           regulates flagella and motility by quorum sensing (OmpR
           family) [Xenorhabdus bovienii SS-2004]
 gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC,
           regulates flagella and motility by quorum sensing (OmpR
           family) [Xenorhabdus bovienii SS-2004]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L+H ++  L S  F V   D+ EDGI   +L    ++  +ILD+ L  +
Sbjct: 1   MRLLLVEDHPDLSHWLQKALSSSGFAV---DIAEDGIAADQLLLTEDYTLLILDVALPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+    + D+V+GL SGADDY++KPF+ EEL ARIRA++R
Sbjct: 58  DGISLLSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G    +   G L V  DA    +    + LT +E+ ++  L  R+   ++K+     
Sbjct: 118 RGMGLPLGIQQFGSL-VYEDAGYFLLDNQPLALTPREFSVLTTLFHRRGRPVSKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   DE   + I++++ +LRKKL N+  G   I T+ G GY L
Sbjct: 177 VFSLSDEANPQSIELYVHRLRKKLFNSDVG---ICTLRGLGYRL 217


>gi|163856324|ref|YP_001630622.1| transcriptional regulatory protein [Bordetella petrii DSM 12804]
 gi|163260052|emb|CAP42353.1| Transcriptional regulatory protein [Bordetella petrii]
          Length = 225

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M ILL+EDD  L  +++  L  +      +  D  E  + L     + A++LD+GL    
Sbjct: 1   MHILLVEDDAMLGMAMQAGLAQKLGATVDWARDAAEARLALAGS-PYAAVLLDIGLPGES 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VLRALR    +TPV +++    + +++ GL +GADDYI KPF  +EL+AR+RA++RR
Sbjct: 60  GLSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAVLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL--RKNTTLTKEMFLN 176
           SR     L+      V LD  T +V+   + +T  +++ + LL+L  R   +LT+E   +
Sbjct: 120 SRNRVTPLLACA--GVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTREQLED 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +Y G    E   I V++ +LR+KL     G + + TV G GY L E
Sbjct: 178 AVYGGHGTIESNTIAVYVHQLRRKL-----GDHIVATVHGYGYRLGE 219


>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 218

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +   L++  +     D G D ++     E D ++LD+GL  I GFE
Sbjct: 3   RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR    + PV +L+  +S  D V GL +GA+DY++KPF  +EL+AR+R+ +R    
Sbjct: 63  VLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+++++  +   + G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 123 ANTISISHGDVTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +P   ++DV++  LR K      G   I TV G GY
Sbjct: 183 DFDPGSNVVDVYVRYLRGKF-----GAARIATVRGAGY 215


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +   +DA++LDL L  I G E
Sbjct: 6   RVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 66  ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A SL   G ++++  A+T  V   R+ LT +E+ ++   +   +   ++   
Sbjct: 126 LERNARIDAGSLRQHG-VAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++  + E     ++  I +LR K+         I TVWGRGY
Sbjct: 185 LNQVWGYQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGY 229


>gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 227

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   I  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N     + +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----SIVETVRGLGYRL 216


>gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 221

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E FNV  +   +D +E  K  + D +ILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALE--KLNDTDLVILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ ++ G + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +DV I +LR+KL +    K  I+TVWG GY L E
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218


>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A      L+S  +   +   G+ G+      ++D IILDL L +  GFE+
Sbjct: 4   ILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  +   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R    
Sbjct: 64  CRRIR-QEADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDRL 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              SR   +SL + G L++N   + V ++   + LT KE+ ++ LL+   N   TKE   
Sbjct: 123 TGDSREARESLTIRG-LTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      E   + V I +LR+K+        YI+TVWG GY L+
Sbjct: 182 ERVWGLESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRLK 228


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 120/218 (55%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++++ED+ A+A  + L L  + + V+V   G  G++  +      ++LD+GL  I G EV
Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A   TPV  ++      D+V GLQ GADDY++KPF+  ELVAR+ A++RRS G 
Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRSTGV 231

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++V G + V+  ++ V V+   + LT  E+ ++  L  R    L +E  L  ++  
Sbjct: 232 TGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQLLADVWGE 291

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + +DV + ++R KL +A    + I T  G GY
Sbjct: 292 ADYSGSRTVDVHVAQVRAKLGDA----SPIRTHRGVGY 325


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E K++DV + +LR+K+        +I TVWG+GY+ +E+ +
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYMWKESMR 229


>gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 226

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   +   L    + V     G     L +   +D  ILD+ L DI GF
Sbjct: 1   MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  KI TPV ILS +   +DK++ L  GADDY++KP +  EL++RI A+ RR  
Sbjct: 61  QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H    +++V  DL VNLD   V+  G  I L+ KE++ +  L   +N  LT+   L  +
Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +    ++DV+I  LR K+      K  I TV G GY++
Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDK-LIRTVKGTGYMI 222


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  + + V     GE  +E     +   ++LD+ +  + G  
Sbjct: 16  RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +   TPV I+S  S ++D+V GL  GADDY++KPFN+EEL+ARIRA++RR   
Sbjct: 76  VLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAA 135

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GD+ V LD +T   +G    L+  E  +++LL+    T +++E   + ++
Sbjct: 136 TETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                PE + +D  + +LRKK+ +      +I+ V G GY L
Sbjct: 196 GYTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQL 237


>gi|313114522|ref|ZP_07800036.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623145|gb|EFQ06586.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 236

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   LK+  +       GE  I +   +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R++R    + P+ +LS  S   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRSVRTWS-NLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLRVTQRRLNLL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G    + V G L ++  A  V +  + +HLT  EY+++ +L+      LT       
Sbjct: 125 ASDGINSPVFVNGPLKIDFSAGCVWLGENELHLTPIEYKLLCVLAHNVGKVLTHTSLTQK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++    E ++  + V++  LRKKL       + I+T  G GY +     DE
Sbjct: 185 VWGSTQENDIASLRVYMASLRKKLERYPDAPHLIQTHVGVGYRMLRAENDE 235


>gi|299529796|ref|ZP_07043229.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298722210|gb|EFI63134.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  +A  ++  L+ + F V V           K   FD  +LDLGL D  G 
Sbjct: 1   MHVLLVEDNALVASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV +L+   +++ ++ GLQ+GADDY+ KPF+  EL AR+ A++RR+ 
Sbjct: 61  HLLARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     IV GD+ V+L A     +G  + L+ +E+ ++  L       L+ E   + LY 
Sbjct: 121 GRTVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++V +  LR+KL     G + +ETV G G+ L
Sbjct: 181 YSLDVESNAVNVHVHHLRRKL-----GSDMVETVRGVGFRL 216


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     G++ ++L     ++ +ILD+ +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+   +    +I+T+WG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGY 228


>gi|161520860|ref|YP_001584287.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189352957|ref|YP_001948584.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|221210152|ref|ZP_03583133.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD1]
 gi|160344910|gb|ABX17995.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189336979|dbj|BAG46048.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|221170840|gb|EEE03306.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD1]
          Length = 232

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL   A+D+
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFPEK-LLHTIRGMGYVL--EARDD 224


>gi|221066634|ref|ZP_03542739.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711657|gb|EED67025.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 224

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  +A  ++  L+ + F V V           K   FD  +LDLGL D  G 
Sbjct: 1   MHVLLVEDNALVASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   ++ PV +L+   ++  ++ GLQ+GADDY+ KPF+  EL AR+ A++RR+ 
Sbjct: 61  HLLARWRSQGLALPVLVLTARDAVGQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     IV GD++V+L A      G  + L+ +E+ ++  L       L+ E   + LY 
Sbjct: 121 GRTVDWIVLGDVNVDLAAGQAMRGGCAVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   ++V +  LR+KL     G + +ETV G G+ L
Sbjct: 181 YSLDVESNAVNVHVHHLRRKL-----GSDMVETVRGVGFRL 216


>gi|297569293|ref|YP_003690637.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925208|gb|ADH86018.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 233

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L I+DD+ +   ++  L+   F +       +  ++ +  + D IILDL L D  G E 
Sbjct: 10  LLAIDDDQDILKVLKANLELHGFKLVTATSLTEARQVLESLQPDLIILDLMLPDGDGLEF 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             +L+      P+ +L+    + DKV GL+ GADDY+ KPF   EL+ARI+A +R S G 
Sbjct: 70  CCSLKSIHPQLPIIMLTARDKVSDKVVGLELGADDYVVKPFETSELLARIKARLRSSPGG 129

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-D 180
           A + ++  G+L V+L  +TV V G  I+LT KE+Q++  L   +N  +T++     L+ D
Sbjct: 130 APNPVIRAGELEVDLRNQTVSVNGQEIYLTAKEFQLLACLVENRNNLVTRDEIRKRLWRD 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     ++IDV I  LR+K+        +I TV GRGY   E
Sbjct: 190 SKIYSWSRVIDVHIQHLRQKIEKTPSRPRFIITVPGRGYRFAE 232


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++ED+ ++   + + L  + F V     GE+ +++    +   ++LDL L  I GF
Sbjct: 5   IKVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R +  +  + +L+  S   DK+ GL+ GADDY+ KPFN  EL+ARIRA +R+  
Sbjct: 65  EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++G    +I   +  ++LDA+    +G  I LT  E+ M+++     N   +++  LN 
Sbjct: 125 NAKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNI 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      ++K +DV + ++R+K+ +       IETVWG GY L+
Sbjct: 185 VWGKNYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRLK 229


>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str.
           Erdman]
          Length = 234

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFEV
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  ++ TPV +L+   +  D++ GL  GADDY++KPFN +EL AR+RA+ RR    
Sbjct: 66  CARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIP 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D  
Sbjct: 126 RPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAA 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E    I+DV+I  LR K+    G  + +ET+ G GY LR++ 
Sbjct: 186 YEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRKDG 227


>gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD
 gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD
 gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
 gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 224

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE + +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 227


>gi|88799721|ref|ZP_01115296.1| DNA-binding response regulator [Reinekea sp. MED297]
 gi|88777615|gb|EAR08815.1| DNA-binding response regulator [Reinekea sp. MED297]
          Length = 223

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 132/234 (56%), Gaps = 20/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56
           MR+LL+EDD  L   ++  +K   + + V   G DG       EF  +     L +    
Sbjct: 1   MRVLLVEDDTELIARLQARIKQHGYALEVATNGVDG-------EFSGMELSLDLIILDLG 53

Query: 57  IPG---FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           +PG    +VLR  R + + TPV +L+   +  ++V GL++GADDY+ KPF++EEL+AR+ 
Sbjct: 54  LPGKNGLDVLRHWRASGVETPVLVLTARDAWHERVDGLKAGADDYLGKPFHEEELLARMD 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+ RR  G +  +I +G L++N D++TV +  GH+  LTG E++++    +  +  L+K 
Sbjct: 114 ALARRRYGVSTDVITSGALTLNSDSQTVTDALGHQHQLTGVEFRLLRYFMMNPDVILSKT 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               H+Y+     +  +I+V+I +LR++      GK+ I T  G+GY+ +  ++
Sbjct: 174 RLSEHVYEEDMLRDSNVIEVYINRLRQRF-----GKSTIVTKRGQGYLFQSGSQ 222


>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 128/231 (55%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D++ ++  ++L L  E + V +   G +G+E    + +D IILD+ L +I G EV
Sbjct: 5   VLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEINGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R     TP+ +++  ++  DKV GL  GA+DYI+KPF  EEL+AR+RA +R     
Sbjct: 65  LKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLEP 124

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A          QS +    L +    ++V  +G RI LT KE+ ++  L   KN  L ++
Sbjct: 125 AATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  ++      +  ++DV+I  +RKK+ +    K  I+TV G GY +RE
Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKIDHGY-KKKLIKTVRGVGYCIRE 234


>gi|1575690|gb|AAB38789.1| response regulator [Synechococcus elongatus PCC 7942]
          Length = 223

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/214 (33%), Positives = 116/214 (54%), Gaps = 7/214 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
           H++   L  E ++V     G++  E+ + Y + A++LD  +    G E+ + LR A+ ST
Sbjct: 14  HALHKALTQERYSVDWLTNGDEAWEMIQTYPYRALVLDWMVPGCSGLEICQRLRQAQDST 73

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           PV +L+    ++D V+GL +GADDY+ KPF   EL+AR+RA++RRS      L+  G   
Sbjct: 74  PVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQTPLLQVG--- 130

Query: 134 VNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           V LD     VQ      + LT +E+Q++E L       L+++  L+ L+    EP   ++
Sbjct: 131 VRLDPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPMDAEPSSNVV 190

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  LR+KL+        IETV+G GY LR +
Sbjct: 191 AAQVRLLRRKLATYQADL-LIETVYGFGYRLRPS 223


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G RI+LT  EY +  L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
 gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
          Length = 222

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 113/202 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED+  LA +I+++L++E + V     G+D  E     E+D IILD+ +  + G 
Sbjct: 1   MRLLIAEDEAELARAIQVILENEGYTVDSVHDGKDAYEYAVLAEYDGIILDIMMPKLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR     TP+ +L+  S+IE+++ GL  GADDY++KPF   EL+ARIRA+ RR  
Sbjct: 61  EVLEKLRSEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMTRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL +N D   +      I L+ KE Q+++LL        + +  +  ++ 
Sbjct: 121 VLQANNLTFEDLELNKDIMRISNGQDEIKLSNKECQILQLLMENPKQIFSADQMIERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
              + E+  I V +  LRKKL+
Sbjct: 181 WDSDIEMNSIWVHLSNLRKKLA 202


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   + L     +D +ILDL +  + G  
Sbjct: 3   KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R  +I+TPV IL+      DK+ GL+ GADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 63  CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 122

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +  G+LS++  + TV+V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 123 RTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L    G   YI TVWG GY    +A
Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 226


>gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 226

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ L  SI   L+   + V     G  G ++     +D ++LD+ L  + GF
Sbjct: 1   MKLLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINLPYLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR       V IL+  + I+D VRGL +GA+DY+ KPF+  EL ARIR+++RR +
Sbjct: 61  TLLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                LI     S NL  K V   G  + LT KE  ++E L L +   +++E  L H++ 
Sbjct: 121 VQEDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVWE 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           DG +E     + V +  LRKKL  AA G+  I    GRGY++  +  +
Sbjct: 181 DGMNEFS-NTVRVHVSALRKKLK-AATGRVVITNEIGRGYIIEADGTE 226


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  ++     I+TVWG GY       DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240


>gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 226

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +   ++  LK+  F   V + G     L    +FD +ILDLGL    G  
Sbjct: 3   RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+    ++D V+ L+ GA+DY++KPF  EEL+ARI+  +R  R 
Sbjct: 63  VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            AQ    + +  G+LS++L  +   V    + L+ KE+ + E+L       ++KE  LN 
Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    +P   II+V+I  LR+K      G  YIETV G GY L  + 
Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKF-----GSQYIETVRGMGYRLNSSG 225


>gi|146311299|ref|YP_001176373.1| DNA-binding transcriptional regulator PhoP [Enterobacter sp. 638]
 gi|145318175|gb|ABP60322.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 224

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ ARI+A++R
Sbjct: 59  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARIQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  +   +    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNSGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQHPHDVITTVRGQGYLF 221


>gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A SI   L+ +  N+  + L  D          D +ILD+GL D  G +
Sbjct: 5   RVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + LR A  S PV ILS      D+V GL+ GADDY+SKPF+  EL+AR+R+++RR+R 
Sbjct: 65  LCKELRAAG-SMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARM 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G   ++   + + + G  ++LT +E+ ++  L   +    +++  L  ++ 
Sbjct: 124 PPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   + +D  I  LR KL  AA  ++YI T  G GY L
Sbjct: 184 ADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCL 224


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    + +NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPTWS--LGTVWGIGY 228


>gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 226

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 116/218 (53%), Gaps = 1/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+A  +   L  E + V +   G   +E     EF+ +ILDLGL  + G EV
Sbjct: 4   VLLAEDDEAIAAPLSRALGREGYTVTIEQTGPSALERALTGEFELLILDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +   V +L+  +   D V GL +GADDY+ KPF   EL+AR+RA++RRS G 
Sbjct: 64  CRQLRAHSLDLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARVRALLRRSGGG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++    + +   A+ V V G  I L  KEY+++ +L       ++++  L  ++   
Sbjct: 124 EDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRDTILREVWGDV 183

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
           +    K +D+ +  LR+K+ +  AG    I TV G G+
Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGF 221


>gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 232

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD A+   I   L   NFN+ V   G  G+E+     +D IILD+ L  + G 
Sbjct: 1   MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGSYDLIILDVMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            V R +R  K + P+ ILS +   ED V G +S ADDY++KPFN EEL AR+    R I 
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + S+    S +   DL+++  +K  + Q   I LT  E++++E L   +   +++   L 
Sbjct: 121 QTSKVEENSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++         ++DV+I  LR K+ +    K  + TV G GYVLR+
Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRD 226


>gi|221196519|ref|ZP_03569566.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2M]
 gi|221203188|ref|ZP_03576207.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2]
 gi|221177122|gb|EEE09550.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2]
 gi|221183073|gb|EEE15473.1| transcriptional activator protein CopR [Burkholderia multivorans
           CGD2M]
          Length = 232

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL   A+D+
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFPEK-LLHTIRGMGYVL--EARDD 224


>gi|83645259|ref|YP_433694.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83633302|gb|ABC29269.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 235

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   + + L+SE + V       +G+ L      DAI+LDLGL D+ G E
Sbjct: 7   RILVIDDEPQILRFLRISLRSEGYEVLQAGSATEGLMLAATEAPDAIVLDLGLPDMDGQE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR     TPV +LS  SS  +KV  L +GA+DY++KPF   E VARIR ++R    
Sbjct: 67  ALRQLR-RTCRTPVLVLSVRSSETEKVEALDNGANDYVTKPFGIREFVARIRVLLRDREP 125

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A      +  +  L ++   ++V + G  IHL+ KEY ++  L+   +  +T++  L  
Sbjct: 126 AALRPSADIYHSAGLHIDFVKRSVTLDGEDIHLSKKEYALLARLAATPDHVVTQQQLLAE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + +   + + + KLR KL +A     ++ T  G GY L
Sbjct: 186 IWGPTHKEDTHYLRIVVAKLRNKLGDAPSAPRFLVTEQGVGYRL 229


>gi|332654158|ref|ZP_08419902.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
 gi|332517244|gb|EGJ46849.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
          Length = 243

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +++ I   L + ++       G++G+ L   +  D I+LDLGL D+ G ++
Sbjct: 16  ILVIEDEKTISNFICRALTANDYKAIPAFSGKEGLSLFFSHGPDLILLDLGLPDMDGMDI 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +      TPV I+S      +KV+ L  GADDYI KPF   EL+ARIR  +RR    
Sbjct: 76  LKEVSGLPQETPVIIISARDRESEKVKALDMGADDYIVKPFGVSELLARIRTTLRRSDRL 135

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+G  + +    DL+V++    V + G  IH T  E++++ELL +     LT +  L 
Sbjct: 136 KLSQGSQKDVYHIKDLTVDIAKHQVLLDGEEIHFTQNEFKILELLCIHAGKVLTYDFILE 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++        +I+ V +  +R+KL        Y+ T  G GY + E+
Sbjct: 196 HVWGPYGGTSNQILRVNMANIRRKLKENPSDPKYVLTELGIGYRMLED 243


>gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IDEIRKIK-NTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     +   I+V I  LR K++      +YI+T+WG G+
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226


>gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +   I   L+++ +  +  + GE  I      + D +ILDLGL D+ G ++
Sbjct: 6   ILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQPDLMILDLGLPDMDGVDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R  +RR R +
Sbjct: 66  IKKLREWS-NMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVSLRRIRVN 124

Query: 123 AQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++      + G+L ++  A  V +    IHLT  EY+++ LL+      LT    L+
Sbjct: 125 GDKILKDASSFINGNLKIDYAAGCVWIGEKEIHLTPSEYKLLCLLAKHVGKVLTHNFILH 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ G    ++  + VF+  LRKK+   +    +I+T  G GY + +   D
Sbjct: 185 EIW-GSHSYDIPALRVFMATLRKKIEKTSSQPKFIQTHIGVGYRMLQVGDD 234


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
            L  LR      PV  L+   ++ D+V+GL++GADDY++KPF+ +E+ AR+  ++R   R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++  A +++   DL++++D+  V   G  I LT  E++++  L       L+K+  L+ +
Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V +++++I  LRKK+   A     I TV G GY++RE
Sbjct: 192 WSYDFGGQVNVVELYISYLRKKID--ADRPALIRTVRGAGYIMRE 234


>gi|293605156|ref|ZP_06687545.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
 gi|292816412|gb|EFF75504.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I++DK  A ++   L  +   V++   G  G+ + K + +D I+LD+ L  + GF
Sbjct: 1   MKVLVIDNDKTSAEALSHTLAEQGQIVHIATDGVSGLRIAKTFPYDLILLDVQLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  + + PV I+S    ++ +V+GL  GADDY+ KPF   ELVAR++AI RRS 
Sbjct: 61  TVLRELR-KESNVPVLIVSARDELQARVQGLSEGADDYLGKPFATCELVARMKAISRRSS 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL- 175
                 AQ ++  GDL + L ++    +G RI LT  E+ ++E L +RK+  +   M L 
Sbjct: 120 TSDDSGAQHVLRVGDLELQLLSRKALREGQRIRLTAIEFALLERL-MRKHGEVQSRMNLA 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++    +     IDV + +LR K+ +  G +  + TVWG GYV+ +
Sbjct: 179 AHVWGINFDRGTNAIDVAVRRLRMKMDDPFGSR-LLHTVWGLGYVMEQ 225


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A+  +++L L  +   V V   GE+ +   K    D I+LD+ L  + GFEV
Sbjct: 4   LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRQIRRTE-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              + V GDL+V+  A TV   G  I LT  E +++  LS      L+++  L  +++  
Sbjct: 123 TSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I+TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRL 221


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++   I   LK+  +       G+  I     +  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R A  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIR-AWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAMM 124

Query: 119 -SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +R    +S+   G L ++  A  V +  + +HLT  EY+++ LLS      LT      
Sbjct: 125 QNRSQVEESVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + VF+  LRKK+ +A     YI+T  G GY
Sbjct: 185 AIWGSSWENDIASLRVFMATLRKKIESAPDSPQYIQTHIGVGY 227


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL+   GG+++ +ETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223


>gi|83749541|ref|ZP_00946528.1| Hypothetical Protein RRSL_00791 [Ralstonia solanacearum UW551]
 gi|207744853|ref|YP_002261245.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|83723777|gb|EAP70968.1| Hypothetical Protein RRSL_00791 [Ralstonia solanacearum UW551]
 gi|206596263|emb|CAQ63190.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V     G    E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAAEHLARQSHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R     TPV IL+   S++DKV GL +GADDY+ KPF   ELVAR++A++RR  
Sbjct: 61  TLLSQYRARDRGTPVLILTARDSLQDKVDGLNTGADDYLLKPFEMLELVARVQALLRRRG 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +    IV G L ++   + + V    + L+ +E+ ++ELL LR+   ++K    +
Sbjct: 121 DNGEPMPRPDIVVGRLRLSGAERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180

Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL          G D      I+V++ ++R+K+      +  I TV G GY+L+  A
Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L+ E + V     G  G+      E   +ILD+ L ++ GF 
Sbjct: 10  RILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMSGFA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR  K S PV +L+   S +DKV+GL++GADDY++KPF+  E +AR+ +++RR   
Sbjct: 70  VLSELRKTK-SIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +SLI  G L +N   ++V VQ   I LT KE+ ++  L+       TK+  
Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++      +   +  +I KLR+K+        YI+T+WG GY   + A
Sbjct: 189 YTQIWQEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNKGA 239


>gi|296122126|ref|YP_003629904.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014466|gb|ADG67705.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +   ++  L +E + V     GE+G+ +      D +ILDLGL D+ G +V
Sbjct: 8   ILIIEDEQPIRRFLKASLSNEGYRVSEAVAGEEGLRMASAQPPDLVILDLGLPDLDGQDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR    ++PV +LS       K++ L SGADDY++KPF   EL+AR+R  +R +   
Sbjct: 68  LKRLR-EWYTSPVIVLSARDQETQKIKALDSGADDYLTKPFGIGELLARMRTAMRHAHRV 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +    G L V+L A+ V      +HLT  EY+++  +       LT    L  ++ 
Sbjct: 127 GPEATTATIGALRVDLAARLVYRSDKEVHLTPLEYKLLVTMIKHAGKVLTHRFLLREVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D  E   + VFI  +R+KL +      YI T  G GY L
Sbjct: 187 PQDSQENHYLRVFIASMRRKLEDDPARPRYILTEQGVGYRL 227


>gi|159185227|ref|NP_355418.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140490|gb|AAK88203.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ L+  +  +L+   + V V   G           FD +ILDL L ++ G 
Sbjct: 1   MRILLVEDNQVLSEGLSALLRGSGYAVDVVSDGASADAAIAAESFDLVILDLNLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR++R  +    V IL+   + E+KV+GL  GADDY+ KPF+  E  AR+R ++RR+ 
Sbjct: 61  EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  G +  +L ++T    G  + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSSALSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+L  A  G   ++T  G GY L
Sbjct: 181 FDDDISANAIEQYVSRLRKRL--APHGLT-VKTARGIGYYL 218


>gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A+ I   L    F V V   G DG    +  E+D IILD+ L  + G+
Sbjct: 1   MRLLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  + +TPV  L+   +IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QLLQLIR-QRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  + V   G RI LT KE+ ++ LL+ R+   L++ +  + +++
Sbjct: 120 LREAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V + +LR K+ +    K  I TV G GY L
Sbjct: 180 LNFDSDTNMVEVAVRRLRSKVDDPYMPK-LIHTVRGVGYQL 219


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 12/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V V D G  G E      +D +ILD  L    G 
Sbjct: 1   MKILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  AICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPS 120

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     G +  L V  DL ++ + +    +G  I L+ KE Q++E L       LT
Sbjct: 121 ILETGSSNFSGDSNRLQVA-DLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E    +L+   ++P   ++   I  LR+K+  AAG    I TV+G+GY L E +
Sbjct: 180 HEQIHQYLWPDGEKPSSNVLAAQIRLLRRKI-EAAGDLPLIHTVYGKGYRLGEGS 233


>gi|284036211|ref|YP_003386141.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815504|gb|ADB37342.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLI+ D      +   L    + + +   G  G+ +     FD I+LD  L  + G 
Sbjct: 1   MKILLIQSDADYLDVLHRTLSERQYTLELASDGYSGLAMGLHARFDMIVLDTHLPRMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR    STPV +LS      DK RGL +GADDY+ +P + +EL+ARI A+ RR  
Sbjct: 61  DVIRRLRQENDSTPVLLLSRFGESADKARGLYAGADDYLVRPCDSDELLARIYALHRRRT 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +A S++   +L +N+  K       RI LT +E+Q++E L       +TK   L  +
Sbjct: 121 GGFNAPSILTVDNLELNIAEKVAYRANQRIRLTAREFQLLEFLIKNAGRVVTKAQILEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D         ++V+I  LRKK+      K  I T  G GY+LR  +
Sbjct: 181 WDNPTVSSTNKVEVYINFLRKKIDRDFDHK-LIHTAMGVGYLLRSGS 226


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G RI+LT  EY +  L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239


>gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     +   I+V I  LR K++      +YI+T+WG G+
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL++DD A+   +   L+   F V   + GE  +EL  F + D +ILDL L  + G 
Sbjct: 1   MKVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALEL--FPQADLVILDLMLPKVGGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  +   P+ IL+     ED+V GL+ GADDY+ KPF+  E+VAR++A++RR+ 
Sbjct: 59  EVARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRA- 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + L V G L +    +   + G  + L+  E+ ++  L+       ++E  L  ++ 
Sbjct: 118 GLREEL-VYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVW- 175

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G   P V +++DV I  LRKKL +      +IETV G GY
Sbjct: 176 GPGFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGY 215


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I   L+  NF V     G+  ++L +      ++LD+ L D+ GFE
Sbjct: 5   KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ ILS      DK+ GL+ GADDYI KPFN  EL ARIR+++RR+  
Sbjct: 65  ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTSR 124

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   +    +  G   + +  + +   G  + LT +E+Q+++    ++N  +T++  L+ 
Sbjct: 125 NTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLDE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      + K +DV I +LR+K+ +      +++TVWG GY  +E+ 
Sbjct: 185 VWGLNYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCFQESG 232


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +E  L  E +   + + GE+ +   +  + D I+LD  L  + G E
Sbjct: 5   RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR+   +   P+ +L+  +   D+VRGL +GADDY+ KPF+  EL +RI+A++RR+
Sbjct: 65  VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R    +  VT GD+ ++  A  V      +HL   E+++++ L        ++E  LN +
Sbjct: 125 RPSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L NA G +N I TV   GY L
Sbjct: 185 WGSDVFVEARTVDVHIGRLRKAL-NAHGHQNPIRTVRSAGYAL 226


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD  +   + L L  + + V   + G   + L +  + D I+LD+ +  + G EV
Sbjct: 6   IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
            R +R+ K + P+  +S    +  K++GL++G DDYI+KPF+  EL ARIRAI+RR+  R
Sbjct: 66  CRRIRL-KTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWR 124

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + +   +++   DL +++DA+ + ++G ++ L  KE+Q++ LL+   N   T E   + 
Sbjct: 125 NNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +V+ + V I KLRKK+        +I+TV G GY
Sbjct: 185 VWGYYSEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGY 226


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L EDD   A  +   L+ E   V V   GE  +   +  E D +ILD+ L  + G  V
Sbjct: 14  IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMNGLTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A    P+ +L+  S+ +D ++GL  GADDY++KP++  EL+AR+R ++RR+   
Sbjct: 74  CRTIR-ASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNAA 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G L+V+ +   V V G+RI  T  E++++E+++ R +   T+   L HL+   
Sbjct: 133 KDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHGFD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + IDV +  LRKK+         + TV+G GY L
Sbjct: 193 RYITQRAIDVHVMNLRKKIETNPRKPAKLLTVYGVGYKL 231


>gi|294497050|ref|YP_003560750.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294346987|gb|ADE67316.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD +L H I   LK E + V     G++G+ L +   +DA+ILD+ L  + G 
Sbjct: 1   MRVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  K+ T V  L+   S+ED+V+GL  GADDY+ KPF   EL AR+R ++R  +
Sbjct: 61  DILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I  G +S+      V + G  + LT KE+Q++E     K   L ++   N ++ 
Sbjct: 121 AE-EGMISYGPISIREANHEVMINGSALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLR 222
              +  V ++DV++  LRKKL   N  G   Y+ TV G G++L+
Sbjct: 180 FTSDVGVGVVDVYVHHLRKKLQPFNCDG---YVRTVRGVGFMLK 220


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + +++     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K        N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E + +Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 16  ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 76  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 134

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 135 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+ +I TVWG GY
Sbjct: 195 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGY 238


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  ++ V +    I  T KE+ ++       N  L KE  
Sbjct: 122 LSGNVSKQRDTLYIHG-ISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
 gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
           DSM 15981]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 116/201 (57%), Gaps = 3/201 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A  I   L    +       G +   L +   +D I+LD+ L    G+
Sbjct: 1   MRILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIMLPGADGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  ++    +TPV  ++  + +EDKVRG + GADDYI+KPF   EL AR+ A++RR  
Sbjct: 61  ELMEYIK--NYNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRRY- 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  I    + V++++KTVE  GH + LT KEY ++ L    +N  L +E     ++ 
Sbjct: 118 GKSRDKIAVAGIEVDMESKTVEKDGHPVELTAKEYDLLLLFLRNRNIALYRERIYEEVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
           G  +P+ + +D+ + +L++K+
Sbjct: 178 GEFDPDSRTVDIHVQRLKRKM 198


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           M+IL++ED+  LA   E + K+   N YV D+   G E   L     +D ++LD+ L  +
Sbjct: 1   MKILVVEDELKLA---EYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VLR LR  K   PV +L+    +ED+V+GLQ+GADDY+ KPF   EL+AR++A++R
Sbjct: 58  DGFAVLRELRRDK-HVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLR 116

Query: 118 R----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R    + G   +++   DL ++L  +     G R+ LT KE+ ++ LL  R    L++  
Sbjct: 117 RGALPTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTA 176

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++D   E    +++V + +LR KL +    K  + TV G GYVL +
Sbjct: 177 LAEQVWDMNFESNTNVVEVAVRRLRSKLDDPF-AKKLLHTVRGMGYVLED 225


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL+IED+   A + E +L       YV D+   G DG+ L     +D I+LD+ + ++
Sbjct: 1   MRILVIEDE---AKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ V++ L  A++ TPV  LS   ++ED+++GL  GADDY+ KPF+  EL+ARIR I+R
Sbjct: 58  DGWSVMKKLG-ARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILR 116

Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +   Q   +  GDL +++  + VE  G RI LT KE+ ++      +   L++ +  +
Sbjct: 117 RGQPQKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIAS 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D   + +  ++DV + +LR+K+      +  I TV G GY
Sbjct: 177 RVWDMNFDSDSNVVDVAVRRLRQKIDEPFEVR-LIHTVHGVGY 218


>gi|19551523|ref|NP_599525.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389170|ref|YP_224572.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323036|dbj|BAB97665.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324503|emb|CAF18843.1| PUTATIVE TWO COMPONENT RESPONSE REGULATOR [Corynebacterium
           glutamicum ATCC 13032]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL EDD  +A  I   L  E F   VT+ G +        +FD ++LDLGL  + G +
Sbjct: 3   KILLAEDDAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR  +++ P+ +L+  ++IED++R L+ GADDY+ KPF   EL+ARI+  +R ++ 
Sbjct: 63  VLEQLRNLQVTLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARIK--LRLAKH 120

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       ++  GDL ++L  + V + G    L+ +E  ++E L       L++   L
Sbjct: 121 TPQETPTDARVLRNGDLELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRVQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   +P   ++DV+I  LRKK+     G + +ET+ G GY LR
Sbjct: 181 RLVWDMDWDPGSNVVDVYIRALRKKI-----GAHRVETIRGSGYRLR 222


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + + +E ++V     G++ + ++    + D IILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MQVVKKLR-KESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +  +++  G L +N D+  V+ + G  I LT  E+ ++ LLS   N   + +  
Sbjct: 120 NIKPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE  +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             ++     D         + +NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      + + +DV I +LR+K+ + +     + TVWG GY
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSTWG--LSTVWGIGY 229


>gi|172058932|ref|YP_001815392.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991453|gb|ACB62375.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDDK LA  + L L+   + V V   G + IE C+ + +D ++LD  +    G 
Sbjct: 1   MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  +    + +L+   +  D V GL SGADDY+ KPF   EL+AR+RA+ RR +
Sbjct: 61  EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   +L +++  +T+   G  + LT +E++ + LL  R    + +E+ +  ++ 
Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     +D  +  +RKKL +AAG    I+TV G GY L
Sbjct: 181 IGADITDNALDALVRLVRKKL-DAAGAPALIQTVRGFGYRL 220


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  I ++L+S++F+    D G   +E  +  + D ++LDL L    G E
Sbjct: 4   KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL++GADDYI+KPF  +ELVAR+RA +R+S  
Sbjct: 64  VCREIRRTS-GVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  GDL +++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R + + ++++V + +LR K+   A     + TV G GY
Sbjct: 183 RHQADTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGY 220


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIP 58
           +ILLIED+ ++A   EL       N YV D+   G++G++     ++D IILD+ L  + 
Sbjct: 3   KILLIEDEVSIA---ELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMN 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R
Sbjct: 60  GFEICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     +++    L+++  A+ V V G  +  T KE+ ++       N  L+KE 
Sbjct: 119 YERLASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +      +V  + V I KLR+K+        ++ETVWG GY L
Sbjct: 179 LYERNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 226


>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + IL+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    +    I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  D   +P  KI+DV I +LR K+   +    YIETVWG GY
Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 119 SRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           S   +Q          +  TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+ +      Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +  +L    + V   + GE+        ++D  +LDLGL  + G 
Sbjct: 1   MRILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+   +  ++V G+ +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  + ++G + ++     V      ++L+  EY+ +  L       +     + HLY 
Sbjct: 121 GRAVPVFISGPVVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELMEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   ++V + +LR+KL     G + IET  G GY++ E A 
Sbjct: 181 HDHDRDPNALEVLVGRLRRKL-----GVDLIETRRGFGYLVPEPAP 221


>gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae
           Sd197]
 gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
 gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ + +L    + + +ILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIKQVR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G   +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  ++L L+ E +NV +   G +G+       +  ++LD+ L  + G EV
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIR  +R++   
Sbjct: 66  LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGTK 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  LN ++
Sbjct: 126 TEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  ++DV+I  +RKKL +    K  I TV G GY ++
Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTVRGVGYAIK 227


>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L+ E F V     G +G++    +  D ++LDL L D  G+ 
Sbjct: 12  KILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGYR 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR      P+ IL+  S   DKVRGL++GADDY++KPF+  EL+ARI AI RR   
Sbjct: 72  VCETLRSRDPVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRRQVR 131

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H ++  + G   +N    T+        LT  E ++++LL  R  + +T++  L  +
Sbjct: 132 LASHEEAFDI-GPWRINTRKHTMNQGRSTKRLTFYELEVLKLLRERAESPVTRDEILEKI 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     P  + +D FI KLR+KL        +I TV+G GY L
Sbjct: 191 WGVTPSPANRTVDNFIVKLRRKLEEDHKRPRHILTVYGHGYKL 233


>gi|167469914|ref|ZP_02334618.1| DNA-binding heavy metal response regulator [Yersinia pestis FV-1]
          Length = 178

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 108/176 (61%), Gaps = 3/176 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M 
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMI 175


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +   +  +L  E ++V V   G+D ++       D I+LD+ L  + G EV
Sbjct: 5   LLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LRVA  + P+ +L+   ++ D+V+G + GADDY+ KPF  EELVARI+A++RR++  
Sbjct: 65  VQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRRNQVE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++   D+ ++   +        I L+  EY+++ L   R    LT+++ ++ ++   
Sbjct: 125 RHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRVWGLD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E    +++V+I  LR  L  A G    I T+ G GYV RE
Sbjct: 185 FEGSSNVLEVYIGYLRNMLE-ADGEARLIHTIRGIGYVFRE 224


>gi|257092597|ref|YP_003166238.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045121|gb|ACV34309.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L   I   LK  ++ V +V D GE        + + A +LDLGL    G
Sbjct: 1   MRILLVEDDSLLGDGIRAGLKLADYAVDWVRD-GEAARLALLDHAYQACVLDLGLPKRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ LR      PV IL+   S  DK+ GL +GADDY++KPF+  EL AR+RA++RR+
Sbjct: 60  LSVLKDLRARGNHLPVLILTARDSSADKIAGLDAGADDYLTKPFDLPELQARLRALIRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +    + +   +K V   G  I L+ +EY ++  L   K    T+      LY
Sbjct: 120 GGAATPTLEHAGVVLEPASKRVLRDGQPIALSAREYALLHDLLSHKTHIRTRSQLEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     ++V++  LRKKL     G ++I TV G GY L
Sbjct: 180 AWGEETGSNTVEVYVHHLRKKL-----GTDFIRTVRGLGYQL 216


>gi|237811046|ref|YP_002895497.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|237502846|gb|ACQ95164.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
          Length = 269

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59
           ILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P   G
Sbjct: 52  ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 108

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR 
Sbjct: 109 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 168

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y
Sbjct: 169 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 228

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 229 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 269


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 127/238 (53%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S            +  TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+ +      Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++           V   GE G  L     +D  ++D  L    G 
Sbjct: 1   MKILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRMLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    +TP  ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR+ 
Sbjct: 61  SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++L   GDL ++  + TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+      K  + TV G GY++R +
Sbjct: 181 DYHFDPQTNVIDVHVSRLRGKIERGF-DKPILHTVRGAGYMIRAD 224


>gi|331082776|ref|ZP_08331899.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400395|gb|EGG80037.1| hypothetical protein HMPREF0992_00823 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 239

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  + + I   L+ E +     + G   I L      D I++DLGL DI G EV
Sbjct: 9   VLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGLPDIDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R   ++ P+ ++S  S  +DKV  L  GADDY++KPF+  EL AR+RA  RR +  
Sbjct: 69  IRKIRTWSVA-PIIVISARSDEKDKVSALDVGADDYLTKPFSVTELSARLRATTRRIQYI 127

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            HA    +S+   G+L ++  A  V+V G  +HL   EY ++ LL+      LT    L 
Sbjct: 128 MHADNTNESVFKNGNLEIDYSAGVVKVSGEEVHLMPLEYSLLCLLAQNIGKVLTYRFILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++  + V++  LRKKL        YI+T  G GY
Sbjct: 188 KVWQNGITSDISSLRVYMASLRKKLEKDKEHSAYIQTHIGVGY 230


>gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 232

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD A+   I   L   NFN+ V   G  G+E+     +D IILD+ L  + G 
Sbjct: 1   MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGNYDLIILDVMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            V R +R  K + P+ ILS +   ED V G +S ADDY++KPFN EEL AR+    R I 
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + SR    + +   DL ++  +K  + Q   I LT  E++++E L   +   +++   L 
Sbjct: 121 QTSRVEENNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++         ++DV+I  LR K+ +    K  + TV G GYVLRE
Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRE 226


>gi|74318372|ref|YP_316112.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057867|gb|AAZ98307.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 115/229 (50%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I + +DD+ +   +   L S+ + V   +       L      D ++LD  +    G  V
Sbjct: 6   IYVTDDDRGIRELVAEYLTSQGYAVETAEDAAALDRLLAARLPDLVVLDWMMPGEDGLSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +LS      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR    
Sbjct: 66  ARRLRARPGFPPIIMLSAKGEDIDRIIGLEVGADDYLPKPFNPRELLARIRAVLRRQPTA 125

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A+      L+  G  SVNLDA+ +   G  I LTG EY+++E+     N  L+++  ++ 
Sbjct: 126 AEPTESARLVRFGPFSVNLDARMLSRDGVEIPLTGGEYELLEIFVRHANRALSRDWLMDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L     +P  + IDV + +LRKK+ +      YI T  G+GY+     K
Sbjct: 186 LRGFERDPFDRSIDVRVNRLRKKIEDDPTNPAYIRTQRGQGYLFVPQGK 234


>gi|94312862|ref|YP_586071.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93356714|gb|ABF10802.1| DNA-binding response regulator in two-component regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   LA    L++KS   + +V D   DG   + +     +D I+LDL L  +
Sbjct: 1   MRLLLVEDHPDLAA---LVIKSLGDSGFVIDHAVDGEAALLMIATASYDLILLDLSLGKV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VLR++R   ++TPV IL+  S I D++ GL  GADDYI+KPF+  EL ARI+A +R
Sbjct: 58  DGLDVLRSIRTQGVTTPVLILTARSEIADRILGLDLGADDYIAKPFDLGELEARIKAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +G  Q +   G LS +   ++   +G  + L+ +E  ++E L LR     T+++    
Sbjct: 118 RRQG-GQPVTTYGGLSFDSVERSFYCEGTALTLSRRELAVLEALFLRAGRVATRDVLFQC 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   DE   + I++++ ++RKKL  +      I  V G GY+L + 
Sbjct: 177 VFSIDDEVNPETIELYVSRVRKKLKPSG---LVITAVRGVGYLLEQR 220


>gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
 gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory
           system with PhoQ [Serratia symbiotica str. Tucson]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DL L   
Sbjct: 1   MRILVVEDNGLLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIVDLVLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+  L+   S +DKV  L++GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGLSLIRRWRAHQMKLPILGLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +IV     ++L  + + V    I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQIIVLPPFQIDLSRRELSVNEQNIKLTAFEYTIIETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKV-QAEYPQDVITTVRGQGY 218


>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 243

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 16/235 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +EL L  E + V  ++ G + +EL     FD I+LD+ L  + G EV
Sbjct: 5   ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLNGLEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           LR L   +    TPV +L+   ++ DKV GL +GA DYI+KPF  EEL+ARIR  ++   
Sbjct: 65  LRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKLYE 124

Query: 118 -RSRGHAQSLI-------VTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNT 167
            R+RG +   +       V     + LD K  TV   GH + LT +E+ M+E L    + 
Sbjct: 125 ARNRGASSGAVEKEKEEGVYTWNKLRLDEKRHTVHFDGHEVTLTNREFLMLETLLANMDI 184

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  +       E  +IDV++  LR K+  A G K  I+TV G GYV++
Sbjct: 185 VLSRDTLLEKVCGYDYIGETNVIDVYVRYLRSKIDEAYGVK-MIQTVRGVGYVIK 238


>gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
 gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G    +   +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G++ +   + +V      I L  +E  ++EL        LT+      LY 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLELFMRNPGRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LRKKL     G  +I T+ G GY L
Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSGFIRTLHGVGYTL 216


>gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 240

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++ED+K L  SI   L+   + V     GE+  E+C    +D I+LD+ L  + GF
Sbjct: 18  VKLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENYDLIVLDINLPKMDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R       V +L+  + I+D+V+GL  GA+DY+ KPF+ +EL ARIR+++RR +
Sbjct: 78  TVLQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQ 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I    L  +   KT  V   R+ LT KE  ++E L L +   + +E  L H+++
Sbjct: 138 VQEDSTISAFGLIFDTKTKTASVNDERVKLTVKETGILEYLLLNQGRYVLQEELLEHVWE 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + V +  LR KL +A  GKN I    G+GY++
Sbjct: 198 SDMNEFSNTVRVHVYGLRNKLKDAL-GKNIIRNEIGKGYII 237


>gi|154245024|ref|YP_001415982.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159109|gb|ABS66325.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 220

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +++ L      V       D         FDA++LD+ L D  G 
Sbjct: 1   MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    +TPV +L+ +    D+VRGL  GADDY+ KPF+ +EL AR+RAI RR  
Sbjct: 61  DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G L ++       + G  I L+ +E+ ++  L  R     ++      LY 
Sbjct: 121 GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V I  LR K+     G+  IETV G GY +R  A
Sbjct: 181 WQEEVESNAVEVHIHNLRAKV-----GRETIETVRGLGYRVRGPA 220


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 130/219 (59%), Gaps = 8/219 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++RS+
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I    L ++  A+ V V+G +++LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KSSSDEI----LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +D  I  LR+KL      ++YI+TV G GY
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDYIKTVRGYGY 211


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +E  +    D ++LDL L    G +
Sbjct: 4   RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRQIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GD+++++   +V+     I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGY 220


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+ + +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 249


>gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  +EL LK   F V     G +G+   +    D ++LDLGL D+ G E
Sbjct: 3   RILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TP+ +L+   ++E KV  L  GADDY+ KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIR-ATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
               ++  G+L++    + V  +   + L+ KE+ ++ LL  R     +++     ++  
Sbjct: 122 --SEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGR 179

Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             GRD     ++DV +  LR KL   AG   Y+ TV G GY LR   + E
Sbjct: 180 PLGRDS---NVLDVHVANLRAKLRE-AGAYGYLRTVRGLGYALRPRGEGE 225


>gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPGF 60
           IL+IED+K LA  +EL LK E +   V   G  G+E  + +   +D I+LDL L ++ G 
Sbjct: 4   ILIIEDEKNLARFVELELKHEGYATEVRYNGRTGLEAAVAEDAHWDVILLDLMLPELNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R    + P+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR  
Sbjct: 64  DVCRRIRQVS-NVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +      Q+ +   DL+V  + + V      I LT +EY+++  L    N  L +++ 
Sbjct: 123 IESEQNITKQTTVTYRDLTVEKENRVVRRGEEVIELTKREYELLLELMENVNVVLARDVL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LN ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 183 LNKVWGYETEVETNVVDVYIRYLRNKI-DVPNVDSYIQTVRGTGYVMR 229


>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 58  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 117 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL       T
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYDPK-LIHTVRGMGYVLEARGSSTT 227


>gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36]
 gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  GDL + L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+      +  I+TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIQTVRGAGY 219


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +   I+  L  E ++V     G   +      ++  I+LD+ L    G 
Sbjct: 1   MKVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K   PV +++  S +EDKV GL +GADDYI+KPF+ +E++ARI A++RR +
Sbjct: 61  KVLSRIREVK-DIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I  GDL +N  +  V  +G  I LT +E++++++L+      L++E     ++ 
Sbjct: 120 KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   ++DV+I  LR KL +       I TV G GY+L+
Sbjct: 180 SSYGENSNVVDVYIKNLRNKLEDRP--PKLIHTVRGMGYMLK 219


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+A ++   L+ E + V     G   ++L +    D +ILD+ +  + G 
Sbjct: 1   MHILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  RALR +  +TPV +L+  + + D+V GL +GADDY++KPF  +EL+AR+RA+VRR  
Sbjct: 61  DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRG- 119

Query: 121 GHAQSLIVTGDLSVN---LDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G+A +   +  L      LDA T EV +G R + LT  E+ ++E         L++E   
Sbjct: 120 GYAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMF 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          +DV++  LR+KL    G    I TV G GYVLRE+
Sbjct: 180 RTVWGHDFGAGSNGLDVYVGYLRRKLEQ-DGEPRLIHTVRGVGYVLRED 227


>gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
 gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED   L+  ++  L S  F V   DL  DG    +L +   ++ ++LD+ L  +
Sbjct: 1   MRILLVEDHDELSLWLQKALSSSGFAV---DLASDGAIADQLLQTERYELVVLDVSLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL  +R     TPV +L+  S + D+V+GL +GADDY++KPF+  EL AR+RA++R
Sbjct: 58  SGLEVLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G        G LS + D   + +    + LT +EY ++  L  R+   ++K      
Sbjct: 118 RSQGQVNESQQFGLLSYHEDGYFL-LGEEPLGLTPREYAVLNTLFHRRGRPVSKMQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   DE  ++ I++++ ++RKKL   AG    I T+ G GY L +
Sbjct: 177 VFSLSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 219


>gi|187933492|ref|YP_001885577.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
 gi|187721645|gb|ACD22866.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK LA+ ++L L+   F+  V +   DG E     E+D I+LDL L D  G 
Sbjct: 1   MRILIIEDDKILANIVKLGLEEFGFSSDVANTAGDGEEKIFINEYDTILLDLNLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R + I+TP+ I++    ++++  GL  G+DDYI KPF+  EL ARI A++RR  
Sbjct: 61  EVLKDIRESGITTPIIIITARIEVKERAIGLDLGSDDYIVKPFDLIELRARINAVIRRFY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I  G+L +N   + V      + L+ KE+ ++E ++      ++ E    H+YD
Sbjct: 121 GRTNAEIKIGNLLINPKTRVVTYSLKPVKLSAKEFDVLEYIANNHPHVVSSESIAEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   ++ V I  L+KKL   A G+  + T+ G+GY + E
Sbjct: 181 EFFDPFSSVLRVHISNLKKKLK-LASGQELLLTLRGKGYRIWE 222


>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
 gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DD  + + + + L +E + +     G + I      +   +ILD+ L DI G 
Sbjct: 2   LKILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K++ P+ ILS      DK++GL +GADDYI+KPFN+ E + R++ ++RR  
Sbjct: 62  EVCRKIR-EKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTY 120

Query: 119 ---SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +RG+   L  IV G L++     TV +  + I LT  E+++++LL++ K    + E 
Sbjct: 121 LFDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++  +       + V I  LR K+     G+  I TVWG GY
Sbjct: 181 IFETVWKEKYFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGY 226


>gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  GDL + L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+      +  I+TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIQTVRGAGY 219


>gi|115358458|ref|YP_775596.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|170703849|ref|ZP_02894543.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|171317815|ref|ZP_02906995.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172063215|ref|YP_001810866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|115283746|gb|ABI89262.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
 gi|170131242|gb|EDS99875.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|171097039|gb|EDT41896.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171995732|gb|ACB66650.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 231

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAIEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++  I +LR KL      K  + T+ G GYVL
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFAEK-LLHTIRGMGYVL 219


>gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R +R
Sbjct: 65  SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L+ +
Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N
Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  ++  +   L +ENF V     G+   E      +  ++LDL +  I G 
Sbjct: 1   MKILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMIPKITGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R  K + P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR+ 
Sbjct: 61  NVMKYIR-QKSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNT 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +A     Q+ +V G L +NL+  TV   G  I LT KE+ ++ LL        TK    
Sbjct: 120 EYAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++     +   ++V I +LR K+ +       + TVWG GY L E 
Sbjct: 180 SLIWNDAYMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKLGEQ 228


>gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 247

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L+   F V      E G+ L +  + +    ++LD+ + ++ G
Sbjct: 5   ILVVDDDPVVRELVSQYLEGRGFKVATL---EHGMALQRKLQDERPALVVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+  
Sbjct: 122 GSVAPSAPEQRAPYRFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRAQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L+   D    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 182 LLEKLHGNSDTHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED++AL   ++  L+SE + V V   GE  + + +  + D ++LD  L  + G EV 
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83

Query: 64  RALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           R LR    +   P+ +L+  +   D++RGL +GADDYI KPF+  EL ARIRA++RR R 
Sbjct: 84  RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +V GDL V+  A  V   G ++HL   E+++++ L        ++E  L+ ++ 
Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E + +DV + +LRK L    G  + I TV   GY L    K
Sbjct: 204 SDIYVEARTVDVHVGRLRKAL-KMEGLVDPIRTVRSAGYALNAGEK 248


>gi|149276735|ref|ZP_01882878.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149232404|gb|EDM37780.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+++L  SI   L +E     +    ++GIE    Y++D I+LDLGL D  G 
Sbjct: 1   MKLLIIEDEESLRRSILQYLTAEGNICDIATSFDEGIEKISLYDYDCILLDLGLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR L+  K S  V I+S   SI+ ++ GL  GADDY+ KPF+  EL ARI AIVRR  
Sbjct: 61  ELLRHLKKLKKSDGVLIISARDSIDQRIEGLSLGADDYLVKPFHLSELYARITAIVRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            +    +V  ++ ++  AK V++ G  I+LT KE+ ++      K+  ++K     H++ 
Sbjct: 121 FNGNDQVVFNEIEIDTTAKEVKINGILINLTKKEFDILLYFVTNKSKVVSKSAAAVHIWG 180

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D         I   I  +RKKL++ AG K+Y ++V+G GY
Sbjct: 181 EDADMADSFDFIYTHIKNIRKKLTD-AGCKDYFQSVYGVGY 220


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + S P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLR-TRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A++ +  G + ++++   V V G  + L  KE++++E+        LT+   ++ +
Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGY 222


>gi|302878903|ref|YP_003847467.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302581692|gb|ADL55703.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA+ +   L+  NF V     G+          FD +ILDLGL D+ G 
Sbjct: 1   MHLLLVEDDPVLANGLMHSLQLANFTVTHEANGQRADHWLTVKCFDLLILDLGLPDMDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR      PV +L+  +S+ D+V GL  GADDY++KPF  +EL ARIRA++RRS+
Sbjct: 61  EILSRLRQRGNLIPVLLLTARNSLTDRVHGLDGGADDYLAKPFELQELEARIRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++++ +   +    + L  +E  ++++L  +    ++K++    L  
Sbjct: 121 PIGHARLEVGGLCLDMEGQCATLNQVPLDLLARELNLLKILMQQAGRVISKDVLCEQLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V++ +LRKK+ +   G   I T+ G GY+L
Sbjct: 181 AGEEISSNAVEVYVHRLRKKIES---GGVSILTLRGLGYML 218


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++    ++  G+L++++    V V    I LT  E++++  LS       ++    E  
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L + ++G +    + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233


>gi|225419918|ref|ZP_03762221.1| hypothetical protein CLOSTASPAR_06259 [Clostridium asparagiforme
           DSM 15981]
 gi|225041426|gb|EEG51672.1| hypothetical protein CLOSTASPAR_06259 [Clostridium asparagiforme
           DSM 15981]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDDK + + +++ L+++ +   + D G  GI        D I+LDLGL DI G 
Sbjct: 4   LTILVIEDDKTIQNFLKISLQTKGYKYILADNGLSGISYFYADNPDLILLDLGLPDIDGM 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R  K   P+ I+S      +KV  L  GADD++ KPFN EEL+ARIR  +R   
Sbjct: 64  EVLRQVR-QKSEVPIIIVSARGQEREKVSALDEGADDFVMKPFNAEELLARIRVALRHKG 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S      L ++ + + + V G  IHLT  EY+M+ LL       LT     N +
Sbjct: 123 TVKKQMSEFELDSLKIDFEKRKIFVHGQEIHLTPIEYKMMTLLVNNSGKVLTHHYIQNQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + + VF+  +R+K+ +      +I T  G GY
Sbjct: 183 WGYDTTDDYQSLRVFMANIRRKIEDDTANPRFILTEVGVGY 223


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 11/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D + + + Y  D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +            ++   DL ++L  + V     R+ LT  E+ ++E+        LT+
Sbjct: 130 ASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 189

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           E  L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E
Sbjct: 190 EQILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGGGE 245


>gi|148378608|ref|YP_001253149.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932965|ref|YP_001382995.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934579|ref|YP_001386541.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170761006|ref|YP_001785954.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947859|ref|YP_002802950.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288092|emb|CAL82160.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929009|gb|ABS34509.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930493|gb|ABS35992.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169407995|gb|ACA56406.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841886|gb|ACO84552.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+ ++   +   L+++ + V    L +D  +   F+  D ++LD+ L D  GF
Sbjct: 3   FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   + + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSDKEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+TV+G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTVFGIGYVMR 227


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A S+   L++E F V V   G  G+        D ++LD+ L    G E
Sbjct: 4   RVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+ + PV +L+      D + GL  GADDY++KPF+  EL AR+ A++RR   
Sbjct: 64  VCRRVQ-AQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              RG   + IV GD+ V+L  + V   G  +HLT  E+Q++  L+ R     ++E  L+
Sbjct: 123 ERERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLS 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D  +    + +D  +  LR+KL     G   I TV   GY L
Sbjct: 183 EVWDWPEGTSTRTVDSHVKALRRKL-----GGGLIRTVHSVGYAL 222


>gi|227819484|ref|YP_002823455.1| response regulator [Sinorhizobium fredii NGR234]
 gi|227338483|gb|ACP22702.1| response regulator in two-component regulatory system with KdpE,
           regulation of potassium translocation [Sinorhizobium
           fredii NGR234]
          Length = 231

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+ A+   + + L SE + V       D I        D I+LDLGL D+ G 
Sbjct: 6   VRILVVDDEPAIRKLLRVGLTSEGYAVLEAINARDAISQVAEKRPDLILLDLGLPDMAGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L   R   +  P+ ILS  +     V+ L+ GADDY++KPF  +EL AR+R  +R   
Sbjct: 66  DLLAKWRSDALELPIIILSSRTDETGIVKALELGADDYVTKPFGMKELAARMRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +  TGDLSV+L  + V+V    + L+ KEY ++ +L       +T +  LN +
Sbjct: 126 QQQGERPIFKTGDLSVDLVKRIVKVADKEVKLSPKEYDILRILVQYAGRVITHQHLLNKI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DG    +V+ + V++ +LR+K+        YI T  G GY LRE
Sbjct: 186 WDG--STDVQYLRVYVRQLRQKIERTPEQPQYITTETGVGYRLRE 228


>gi|215445178|ref|ZP_03431930.1| transcriptional regulatory protein kdpE [Mycobacterium tuberculosis
           T85]
 gi|289757111|ref|ZP_06516489.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|294995216|ref|ZP_06800907.1| transcriptional regulator kdpE [Mycobacterium tuberculosis 210]
 gi|289712675|gb|EFD76687.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85]
 gi|326904745|gb|EGE51678.1| transcriptional regulator kdpE [Mycobacterium tuberculosis W-148]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +  ++ + L    + V     G   +     +  D +ILDLGL D+   +V
Sbjct: 4   VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPPDVVILDLGLPDMSSIDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   ++ PV +LS  +   DKV+ L +GADDY++KPF  +E +AR+RA VRR+   
Sbjct: 64  LGGLR-GWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A   Q +I T   +V+L  K V   G  +HLT  E+ M+E+L+  +   + +   L  ++
Sbjct: 123 AELEQPVIETDSFTVDLAGKKVIKDGAEVHLTPTEWGMLEMLARNRGKLVGRGELLKEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 183 GPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+ +   + L L++E F     + G   +E  +   FD IILDL +  + G+
Sbjct: 1   MRILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR  +   P+ +L+      D++ G   GADDYI KPF+  EL AR++A++RR  
Sbjct: 61  TVCKVLR-KETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLD 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    + LI     ++N   + + V+G  + LT KE+ ++ +L+       T++  L+ +
Sbjct: 120 GETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     + + +D  I +LR K  +  G  ++I+TV G GY    N +
Sbjct: 180 WDFDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYNGR 227


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD AL+  +E   ++E +NV  T  G++ + L      D IILD  +    G E
Sbjct: 5   KLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  V+ +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK +    G K+ I TV   GY L
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-GLEGAKDPIRTVRSAGYAL 226


>gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 233

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R +R
Sbjct: 65  SVLRKIRQSN-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L+ +
Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N
Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|186471982|ref|YP_001859324.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194314|gb|ACC72278.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +  S+   L+  +++V +V D G  G       E+  ++LDLGL  + G
Sbjct: 1   MRVLLVEDDLQIGQSLMRALQDADYSVDWVRD-GNAGSAAIAAAEYTVVLLDLGLPGMGG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+  R A  + PV IL+    +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR 
Sbjct: 60  IELLKTARGAGNTVPVLILTARDDLEARVQGLDVGADDYVLKPFDVPELMARMRAVLRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+A S +    L+++LD + +   G    L+ +E+ ++     R  T L+++   + LY
Sbjct: 120 AGYASSRLGDDALNLDLDKRMLCCNGVSSVLSAREFALMLAFLERPGTILSRDQLEDKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +DV I  +RKK      G+  I  V G G+ +
Sbjct: 180 GWGKEVESNAVDVLIHSVRKKF-----GQAVIRNVRGLGWTV 216


>gi|121598313|ref|YP_991950.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134279900|ref|ZP_01766612.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217419846|ref|ZP_03451352.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238562735|ref|ZP_00439964.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242314238|ref|ZP_04813254.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|251767807|ref|ZP_04820262.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|121227123|gb|ABM49641.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134249100|gb|EBA49182.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|217397150|gb|EEC37166.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238522054|gb|EEP85501.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242137477|gb|EES23879.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243061672|gb|EES43858.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 283

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59
           ILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P   G
Sbjct: 66  ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 122

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR 
Sbjct: 123 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 182

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y
Sbjct: 183 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 242

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 243 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 283


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E   + E ++V  TD G++ + L      D ++LD  +    G E
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+  S  +D++RGL+ GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDLS++  A  V  +G  + +   E+++++          ++   L+ +
Sbjct: 125 RPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LR+ ++   G  + + TV   GY L
Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAIA-VPGAADPVRTVRSAGYAL 226


>gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DA+ILDL L  I G 
Sbjct: 11  MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 71  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 191 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 228


>gi|221640766|ref|YP_002527028.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221161547|gb|ACM02527.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E + + + V+I +LR KL + A    +I T  G GY  R+ 
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPLWIFTEPGIGYRFRDR 228


>gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 224

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  I G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   ++ PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGLTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +Q   + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVHEVQRLGELIFH-DEGYFLLQEQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+  +A  +E+ L+ E + V     G   +EL +   +D IILD+ L    G E+
Sbjct: 5   ILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFSGIEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121
           LR +R     TP+ +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R +S G
Sbjct: 65  LRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKSAG 124

Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  +       DL +N   + V      I LT +E+ ++  L   K   L +E  L  
Sbjct: 125 TEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQILEA 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  ++DV+I  LRKK+ +       I T+ G GYVL+E 
Sbjct: 185 VWGYDFLGDTNVVDVYIRYLRKKI-DMPERPALIHTIRGVGYVLKET 230


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L++NL+  TV      I LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  +   +   L+ E + V + + G   ++L    + D ++LD+ L ++ G 
Sbjct: 6   VKILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDGL 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV + +R  +   S P+ +LS    + D+V GL+ GADDY++KPF+  EL+ARI+A +R 
Sbjct: 66  EVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLRE 125

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + ++  L   +  GDL +  ++  V V+G  + LTGKE+ ++ +   R N   ++E  L
Sbjct: 126 EKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      + + +DV I  LR KL + +     IE+V G GY L  N
Sbjct: 186 QKVWGYTISGDTRTVDVHISNLRSKLKSISP---IIESVRGVGYRLAVN 231


>gi|50122964|ref|YP_052131.1| DNA-binding transcriptional regulator BasR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613490|emb|CAG76941.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALINSAHYSLVILDLGLPDDDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    + D+V GL  GADDY++KPF   EL AR+RA++RR++
Sbjct: 61  ALLSRWRKNNYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    + LT KE+ ++  L L+  + + +E+    +Y 
Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLMLKAGSQVHRELLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216


>gi|325262523|ref|ZP_08129260.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
 gi|324032355|gb|EGB93633.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           D5]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK + + + + LK E +  YV    ++ I L      D I+LDLGL D  G EV
Sbjct: 7   ILIVEDDKYIVNFMSMTLKDEGYGYYVAKSVKEAISLFYANRPDMILLDLGLPDGEGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    STP+ ++S     ++K++ L +GADDY++KPF   EL+ARIR  +R+    
Sbjct: 67  VKNVRELS-STPIIVVSARQEEQEKIQALDAGADDYVTKPFYMGELMARIRVAMRKRERM 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   AQ +     L+V+   ++V V    IHLT  EY+++ LL   +   LT    L  +
Sbjct: 126 APESAQEMFRQDYLTVDYTKRSVLVDNEEIHLTPIEYKILTLLIANRGKVLTHNYILKEI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +  E   + VF+  LR+K+        +I T  G GY  +E
Sbjct: 186 WGYGEGVEAGTLRVFMATLRRKIEKNPAEPRFIVTEVGVGYRFKE 230


>gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 227

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+IL++ED+      +   L       YV DL   G DG+ +     +D +ILD+ L  +
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAG---YVADLVPNGTDGLHMALHGAYDLVILDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R
Sbjct: 58  NGWQVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR 117

Query: 118 R-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R   G+  +++   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  +
Sbjct: 118 RGPAGNEGTMLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 178 QVWDMNFDSDTNVIEVAMRRLRMKIDEGHAVK-LIQTVRGMGYVL 221


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F+V     G + + +L    + D  +LD+ +  I GF
Sbjct: 3   KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A+    +G  +++L +K  +  G  I LT  E+ +I+    ++NT L++++ L+
Sbjct: 123 VYRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H++      + KI+DV I +LR+K+        +++TVWG GY
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGY 225


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           M+IL+ +D++A+  S+    +S  FN Y   L EDG   +EL +  +   +ILD+ +  +
Sbjct: 1   MKILVADDEQAVRESLR---RSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++ R
Sbjct: 58  DGLEVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFR 117

Query: 118 RSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS   +Q+      +   DL +N D + V   G  I LT  E+ ++E L       L++ 
Sbjct: 118 RSITESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRS 177

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++          ++V+I  LRKK + A G    I TV G GYVLRE A 
Sbjct: 178 DILEEVWGYNFPTSGNALEVYIGYLRKK-TEANGESRLIHTVRGVGYVLRETAP 230


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+   F+V     GE+ +      +   IILDL L  + G +
Sbjct: 4   KILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLDGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  +I TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++AI+RR+  
Sbjct: 64  VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTEI 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +V G+L +  +     + G  + LT KE++++  L+  K   LT++  L+
Sbjct: 124 VQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +++     + +I+DV I  LR+K+        YI+TV G GY L E  + E
Sbjct: 184 AVWNYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEEPKRHE 235


>gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
 gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
          Length = 241

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLT---- 55
           M++L+IEDD  LA  I   L    +  +V      GIE  +    +D ++LDL L     
Sbjct: 1   MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60

Query: 56  --DIP-GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
             D P G  V R +R    + P+ +L+ +  +  KV GL +GADDY+ KPF+  EL+AR+
Sbjct: 61  AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120

Query: 113 RAIVRRS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RA++RRS +  A  L V G ++++   +T E  G RI LT KE+ ++E L       ++ 
Sbjct: 121 RALLRRSPQAQAPVLTVRG-VALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSS 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++H +D   E    ++  +I  LR+KL+ A G  + IET  G GYV+ ++
Sbjct: 180 TELIDHAWDSNYEGFSNVVQTYIRYLRQKLT-AGGEPDVIETRRGSGYVIEQS 231


>gi|325003064|ref|ZP_08124176.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   L        +   G   +      E D ++LD+GL D  G 
Sbjct: 1   MRVLLVEDDAVLGDALRRTLVKHGHPTDLVGSGTAALSAIADREPDVVLLDMGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R  +   P+  ++G   +  +V+GL++GADDY+ KP + +EL+ARI A++RRS 
Sbjct: 61  GVCREIR-ERSRVPILAITGRGDVAARVQGLRAGADDYLVKPVSTDELLARIDAVLRRST 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  S +  GD+ V+L+ ++V   G  + LT KE+ ++  L+ R+   L +   L  ++
Sbjct: 120 GGAVASTVAVGDVVVDLERRSVTAAGDEVALTRKEFDLLAALARREGAVLPRTELLEQVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D    + ++  +  LR KL    G +  + TV G GY L
Sbjct: 180 GVADGSAARTLEAHVASLRSKL----GAREVVVTVRGVGYRL 217


>gi|307943941|ref|ZP_07659283.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4]
 gi|307772782|gb|EFO32001.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 115/203 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L+ED+ +L+  I   L+    +V V   GE+     K  + D +ILD+ L    G 
Sbjct: 1   MRIALVEDNISLSKGIAYQLRDAGHSVDVLHDGEEADLFLKTEDGDLVILDINLPGKNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L ALR      PV +L+  S  +D+V+GL +GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  EILAALRERGDPRPVLLLTARSETQDRVKGLDAGADDYLVKPFEMEELAARVRALGRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + LI  G L ++++A  +      + +  +E  ++  L+  +   L+K   L+HLY 
Sbjct: 121 TAPRQLIKLGTLKLDVNALQLLHGDTVLDVPRRELVLLSALAEAQGRALSKGALLDHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
              E + K+I+V++ +LRK+LS+
Sbjct: 181 AGSESDEKVIEVYVSRLRKRLSS 203


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 130/228 (57%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   +   L+ E ++V  T  G D +E  +    DAIILDL L  + G 
Sbjct: 1   MTILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR    ++  P+ +L+  S   D V GL+ GADDYI+KPF+   L+AR++A+++R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R   G +   IV G+L ++    +V V+G  I L+  E+ ++  L+       +++  +
Sbjct: 121 TRPPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQII 180

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +  G D P   + +DV I  +RKKL +A   ++YI+TV G GY L+
Sbjct: 181 DAV-KGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQ 224


>gi|261821426|ref|YP_003259532.1| PhoP family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261605439|gb|ACX87925.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL++ED+  L H + + +      V   D   D  E   F      D  I+DLGL D 
Sbjct: 1   MRILVVEDNVLLLHHLTVQMNEMGHQV---DAASDAKEADYFLHENMPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  +   P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMSMIRRWRANQAKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQIISLPPFEVDLSRRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+   A   + I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQQ-ADAPDVITTVRGQGY 218


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  IE+ L +E ++V   + G   +E+ +  E D +ILD+ L  + G  
Sbjct: 4   RILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLDGIS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +K +TP+ +LS      DK+ GL +GADDY+ KPFN  ELVAR+++++RRS  
Sbjct: 64  VCMKIRESK-TTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            AQ           +I    L+++ +  T  V G+ + LT  E+ ++ LL+         
Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++  +       + V I +LR KL     G+  I TVWG GY L
Sbjct: 183 EEIFELIWKDKYLDSSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKL 232


>gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L + +F V V   G   +     +  D ++LDLGL DI G +
Sbjct: 3   RVLVVDDEPQILRALRINLLARHFEVAVAPDGGSALRQAADWHPDLVVLDLGLPDIDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+  LR    + P+ +LSG +  +DKV  L +GADDY++KPFN EEL+AR+RA+ RR+  
Sbjct: 63  VIHGLR-GWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRRTAV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + I  G  +V+L  KT+      + LT  E++M+ELL       +++   L  ++
Sbjct: 122 QDAEPARIEIGGHTVDLADKTIS---GGVRLTPTEWRMLELLLRNPGKLISQRQMLTEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D +   E   +  ++ +LR+KL        ++ T  G GY
Sbjct: 179 DSKHTTETNYLRQYMAQLRRKLEPDPARPVHLLTEPGMGY 218


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F V V + GE+G+      +F+ ++LD+ +  + GF 
Sbjct: 3   KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+ARIRAI+RR+  
Sbjct: 63  MLAKLRETH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQS 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG     I   DL +    +        + LT  E+ ++E L LR    +  +  L
Sbjct: 122 AQPQRGGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECL-LRNPGQIVSKSQL 180

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + L  G+  EP  + ID+ +  LRKKL     G+   +TV GRGY+  E A
Sbjct: 181 SELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL+   GG+++ +ETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58
           +IL+++DD  +   +   L  E F+V    L ED   L +    DA   I+LDL +    
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFDVI---LAEDSKALNRIMLRDAVDLIVLDLMMPGED 68

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY++KPFN  EL+ARI A++RR
Sbjct: 69  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +    Q +I  G  S ++  +T++  G  + LT  E+ M++ L       L+
Sbjct: 129 RPTAEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLS 188

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 189 REK-LAQLARGREFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVF 239


>gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
 gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
          Length = 219

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILRKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  +    +     V +   GE+G+ L    ++D +++D  L    G 
Sbjct: 13  MRLLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPARDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++  LR    +TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 73  SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+G A+++    DL ++  A  V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 133 SQG-AETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR K+         I TV G GY++R  A
Sbjct: 192 WDYHFDPQTNVIDVHVSRLRSKIDKGF-DVPLIHTVRGAGYMVRAGA 237


>gi|312959545|ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
 gi|311286262|gb|EFQ64826.1| DNA-binding response regulator [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          ++   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEDYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   V G  + LT +E  ++E L  R    ++KE   + ++ 
Sbjct: 121 LGGERQQTCGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GQPIAIVTFRGLGYLL 218


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   +   L+ E + V     GE G+++ +    D ++LDL +  + G +
Sbjct: 6   KILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLSGND 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  +  TPV +L+    + DK+ GL+ GADDY++KPF   ELVARI+A++RR+  
Sbjct: 66  VCRIIR-QESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  A  L V G+L+V+++ +  ++ G  I LT  E+ +++L++       ++   L+ L 
Sbjct: 125 RTFAPVLRV-GELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQ 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + ID  I  LR+K+       +YI+TV+G GY L
Sbjct: 184 GDTYEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRL 225


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L  E F V V   G++ + L      D I+LD  L  + G  V
Sbjct: 4   VLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDGLAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR A   TP+ +L+   ++ED+V GL SGADDY+ KPF   EL+ARIRA++RR    
Sbjct: 64  VQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEPA 123

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL----NH 177
           + +  +V  DL ++   +          L+ +E+ ++          LT+   L     H
Sbjct: 124 SDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWGH 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +DG D     ++DV+I  LR+KL  A G    I TV G GYVLRE+
Sbjct: 184 DFDGYD----SVLDVYIGYLRQKL-EAGGEPRLIHTVRGVGYVLRES 225


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L+++ V  +   I LT KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +   +   I K+R K        N+I TVWG GY
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222


>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 231

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD+ +   + + L++E F +     G+  +E  + Y + D +ILD+ +  + G
Sbjct: 1   MKILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  +R    + P+ +LS  S+  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  ISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRT 120

Query: 120 RG-----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +   I  G L +N  +  V  + G  I LT  E+ ++ LL+   N   + + 
Sbjct: 121 SALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++        K + V +  LR K++ A GG   IETVWG GY
Sbjct: 181 IFETVWQQESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGY 226


>gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
 gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC
           9817]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDDK +   ++L L+ E + V + + GE GI   K    D I+LDL +  + G E
Sbjct: 6   KVLIIEDDKNIRRFLQLELEHEGYKVIIGENGEIGINKFKNETPDIILLDLMMPILSGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ IL+      +K+  L  GADDYI+KPF  EEL AR+R  +R  + 
Sbjct: 66  VCKIIRKTS-EIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKE 124

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   +L + +D+K +     +I LT KEY ++ L  L K   +++E  +  ++ 
Sbjct: 125 FKTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E + KI+DV+I  LRKK+ N    + YI TV G GY+L++  K+E
Sbjct: 185 YDFEGKDKIVDVYINLLRKKIENK--NEKYIHTVRGFGYILKKIIKNE 230


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L+ NL+  TV      I+LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RR    
Sbjct: 65  CQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSSFQ 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 125 QTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEEIF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL      +  I TVWG GY
Sbjct: 185 ERVWNEDGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGY 228


>gi|328882443|emb|CCA55682.1| two component transcriptional regulator, winged helix family
           [Streptomyces venezuelae ATCC 10712]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 128/227 (56%), Gaps = 16/227 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI-ILDLGLTDIPGF 60
           R+L++EDD  L  ++ ++L    + V V + G +G+ L  F E  A+ ILDL L ++ G+
Sbjct: 3   RLLVVEDDPDLGLALRVLLARRGYEVSVAEDGREGLRLL-FAERPALMILDLLLPELDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL   R      PV +LSG+  ++D+VRGL+SGADDY+ KPF   EL+AR+ A++RRS 
Sbjct: 62  QVLDRTRDMS-DLPVLVLSGLGDVDDRVRGLRSGADDYLVKPFAHPELLARVDALLRRSG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G      V  DL +  + +    QG  I L+  EY++++LL   +   +T E  L+ ++
Sbjct: 121 PGSWAGESVGEDLRLVPERRAALWQGSEIRLSDIEYRLLQLLVRNRGRVVTTEQLLDQVW 180

Query: 180 D-----GRDEPEVKIIDVFICKLRKKLSNAAG--GKNYIETVWGRGY 219
           D     GRD      +   + +LR+KL  A G   ++ +E + G GY
Sbjct: 181 DDPTSIGRDR-----VKFAVLRLRRKLRTAGGPASRDPLEAIRGLGY 222


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +++R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 80  VAKSIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 139 VSVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 198 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|295394476|ref|ZP_06804699.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972655|gb|EFG48507.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L+ ++ + L +  + V   + GE  + L   +  +AI+LDLGL ++ G +V
Sbjct: 2   ILIVEDDPTLSRAMAVNLIARGYKVLTANTGEQALTLASDHPIEAILLDLGLPNMSGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  +R      P+ +++     + K+  L  GADDY++KPF   EL+AR+RA +RR  + 
Sbjct: 62  IDGIR-GWSQVPIIVVTARHETQSKIEALDRGADDYVTKPFALGELLARLRANLRRVPQE 120

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A+ ++VT D  LS++L    V V G ++ LT  E++++  L+   N  + +E  L H++
Sbjct: 121 TAEPVVVTSDGRLSIDLARNIVAVSGEQVSLTPHEWKIVGYLARHPNRLVRREELLTHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E     V++ ++R+KL   +    Y  T  G GY
Sbjct: 181 GKGYEKESNYARVYMSQIRQKLEVDSATPKYFITEPGMGY 220


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  ++  L+ E ++V V   GE+G+      + D ++LD  L  + G EV
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + PV +L+      D+VRGL +GADDY++KPF+  EL+ARIRA++RR R
Sbjct: 65  CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +  GD+ ++  A  V   G  +HL   E+++++          ++E  L+ ++
Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L N     N I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEESANPIRTVRSAGYSL 225


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     G++ ++L     ++ +ILD+ +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica
           W22703]
          Length = 223

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY    N
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQGYRFDAN 223


>gi|253690197|ref|YP_003019387.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756775|gb|ACT14851.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 222

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALGHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDDDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    + D+V GL  GADDY++KPF   EL AR+RA++RR++
Sbjct: 61  ALLSRWRKNNYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    +Y 
Sbjct: 121 GSSNSKIQVDNITLDLNNQQVWLDEKPIVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+G+E  + ++ + +ILD+ L  + G E
Sbjct: 3   KILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  ++I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + KI+DV I +LR K+        +I TVWG GY
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGY 223


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   +   L+   ++V     GE+ +E     + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123

Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              +             I  G+L +  +   V  Q  R+ LT KE++++  L+  K   L
Sbjct: 124 SQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           T+++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKPNE 242


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  ++     I+TVWG GY       DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED+      +   L       YV D  EDG+      +  ++D +ILD+ L   
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAG---YVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR  + STPV  L+    + D+VRGL+ GADDY++KPF+  ELVAR+R+I+R
Sbjct: 58  DGWTLLQNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +      +   DL ++L  +    QG  I LT KE+ ++ LL  ++   L +    + 
Sbjct: 117 RGKPRESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKVDDAYEPK-LIHTVRGMGYVL 219


>gi|222110663|ref|YP_002552927.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221730107|gb|ACM32927.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 223

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L ++ F        +    L     + A++LD  L D  G 
Sbjct: 1   MRILLVEDDLPLASALAEFLCAKGFVCECAASLQAARALLPLAHWGAVLLDWQLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR       V +L+    I D+++GL +GADDY+ KP++ +EL+AR+RA+ RR  
Sbjct: 61  ALLPLLRARLPEAAVIVLTARDQITDRIQGLDAGADDYLVKPYDPDELLARLRAVERRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+    LS++L    V++ G  + LT KE+ ++ +L+ R +    +E  L+ LY 
Sbjct: 121 GAASALLQLPGLSIDLGRMAVQLDGQAVELTAKEWAVLRVLAQRPDRIHPRESLLDALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     ++VFI  LR+K+     G+  I+T+ G GY L   A
Sbjct: 181 LDADASSNTLEVFISNLRRKI-----GRERIQTLRGLGYKLNTAA 220


>gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046]
 gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89]
 gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536]
 gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC
           O1]
 gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC
           8739]
 gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           SMS-3-5]
 gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638]
 gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88]
 gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a]
 gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39]
 gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           UMN026]
 gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str.
           REL606]
 gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp.
           4_1_40B]
 gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736]
 gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046]
 gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89]
 gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli
           536]
 gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1]
 gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5]
 gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638]
 gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli S88]
 gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI39]
 gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli ED1a]
 gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli UMN026]
 gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82]
 gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli B str. REL606]
 gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BL21(DE3)]
 gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042]
 gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034]
 gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146]
 gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431]
 gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae
           CDC 74-1112]
 gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC
           9905]
 gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli
           WV_060327]
 gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1]
 gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v]
 gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli
           AA86]
 gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + L      D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +   TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR + 
Sbjct: 63  VLRQIR-SNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q+          I  GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231


>gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L+   + V     GE+G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV+G  +GADDY++KPF+ EE++ARIRA++RR  
Sbjct: 61  TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +V G + ++  +  V V G  + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   ++VF+ +LRKKL     G + I+TV G GY+
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKL-----GVDLIQTVRGLGYM 215


>gi|229824525|ref|ZP_04450594.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271]
 gi|229785896|gb|EEP22010.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 121/207 (58%), Gaps = 3/207 (1%)

Query: 16  IELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           I+ +LK  +++V +V D GE+ +   +  E+D +ILD+ +    GF+VL+ LR      P
Sbjct: 16  IQAILKHHHYDVDHVAD-GEEALLYARSMEYDGLILDVMMPKKSGFDVLKTLRSEGSQVP 74

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSV 134
             +L+  + IEDKV+GL  GADDY++KPF+ +EL+ARIR+++RR     ++ +  GDL++
Sbjct: 75  TLLLTAKNQIEDKVQGLDLGADDYLTKPFDMQELLARIRSMLRRPANLVENDLRYGDLTL 134

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194
                ++ V    + L  +E+Q++E+  L +   L+ ++ +  ++    + E+ ++ V +
Sbjct: 135 YRQRASLAVGAAELALNKREFQLMEMFMLNQQQVLSTDLIMERIWGLDSDAEINVVWVNV 194

Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LRKKL    G K  I+   G GY L
Sbjct: 195 SSLRKKLQQ-LGSKVTIKASRGLGYQL 220


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 119 --SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R  AQ  + +  GD+ +N+    V V    + LT +E+ ++ELL+  K   ++ E  
Sbjct: 124 MNGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I K+R+K+        Y++TVWG GY
Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228


>gi|170724651|ref|YP_001758677.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169809998|gb|ACA84582.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L+  +  +L+ E F + + + GE G+ L    +FD I+LD+ L  + GFEV
Sbjct: 4   ILLIDDDLGLSELLGQLLELEGFKLTLANDGEAGLALALEQKFDLILLDVMLPKLNGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ALRV K  TPV +L+      D+V GL+ GADDY+ KPFN  EL+ARI+AI+RR+   
Sbjct: 64  LKALRVKK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIKAIIRRTNLQ 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S+   GD+ ++   + V  Q   + LTG E+ ++  +       ++KE+    +
Sbjct: 123 IDETQPSIHEYGDIKLDPSRQEVYCQDMLLILTGTEFTLLFEMLQNGGELISKELLSEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +  P  + +D+ +  LRKKL +   G+  ++T+ G+GY+
Sbjct: 183 LGKKLMPFDRSLDMHLSNLRKKLPDRTDGRPRVKTIRGKGYI 224


>gi|160894396|ref|ZP_02075173.1| hypothetical protein CLOL250_01949 [Clostridium sp. L2-50]
 gi|156864097|gb|EDO57528.1| hypothetical protein CLOL250_01949 [Clostridium sp. L2-50]
          Length = 234

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ + + I  ++++  +          G  +   +  D +ILDLGL D  G  
Sbjct: 7   KILIIEDEEHINNLISALMEANGYQAVSAYSCRGGQMMFASHRPDLVILDLGLPDRDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R +   TP+ +LS  S   DKV  L  GA+DY++KPF+  ELVAR+R+ +R +  
Sbjct: 67  FLREVRQSSF-TPIIVLSARSDERDKVEALNEGANDYVTKPFSSNELVARVRSALRIATH 125

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+           G+L +N DA+ V + G+ + LT  EY ++ LLS      LT    +
Sbjct: 126 RAEDGLRPGGRFEVGELVINYDARLVTIAGNEVKLTQTEYNIVALLSEHAGKMLTYSFII 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++   D    K + V +  +RKK     G +NYI    G GY
Sbjct: 186 NEIWGYNDSGSRKKLQVNMANIRKKFGAVPGKENYITNELGVGY 229


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E + V +   G D +        D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S PV ++S      DKV GL+ GADDY++KP++  ELVARIRA++RR + 
Sbjct: 63  VCRQIRQTS-SVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  G + ++++   V V G    L  KE++++E+        LT+   ++ ++
Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV + +LR K+    G   Y+ TV G GY
Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGY 221


>gi|330975763|gb|EGH75829.1| heavy metal response regulator [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 191

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 111/187 (59%), Gaps = 2/187 (1%)

Query: 35  DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94
           +G+ L    +   +ILD+ L  + GF VLRALR A+  TPV +L+    ++D++RGL+ G
Sbjct: 1   EGLHLALENDHAIVILDVMLPGLDGFGVLRALR-ARKQTPVIMLTAREQVDDRIRGLREG 59

Query: 95  ADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
           ADDY+ KPF+  ELVAR++A+ RRS GH    I   DL ++L ++     G R+ LT KE
Sbjct: 60  ADDYLGKPFSFLELVARLQALTRRSGGHEPVQITIADLWIDLISRKATRAGLRLDLTAKE 119

Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           + ++ +L+ R+   L+K      ++D   + +  +++V I +LR KL      K  + T+
Sbjct: 120 FSLLSVLARRQGDILSKTSIAEMVWDINFDSDTNVVEVAIKRLRAKLDGPYEHK-LLHTI 178

Query: 215 WGRGYVL 221
            G GYVL
Sbjct: 179 RGMGYVL 185


>gi|291037441|ref|ZP_06568405.1| two component response regulator KdpE [Gluconacetobacter xylinus
           NBRC 3288]
          Length = 223

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED+  L  +++  +  +   V + T L ED        ++D I+LDLGL D  G
Sbjct: 1   MRILIVEDEYDLGVAVQERVGLDGHAVDWFTTL-EDARAAMATVDYDFILLDLGLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++LR +R       + I +    I D++ GL  GADDYI KP++  ELVARI A+ RR 
Sbjct: 60  RDLLREVRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRY 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q+    G+++++ + ++V   G R+ LT +E+ ++ELLS       +++     L
Sbjct: 120 ASPRRQAHCRVGEITIDRENRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTVL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y    E +   ++VFI +LR+KL     G N I T+ GRGY L
Sbjct: 180 YALDREVDSNTVEVFISRLRRKL-----GNNVIRTIRGRGYCL 217


>gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 247

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 14/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L    FNV      E+G+ L +  + +    ++LD+ + ++ G
Sbjct: 5   ILIVDDDPVVRELVSEYLHGRGFNVATL---ENGLALQRRLQQERPALVVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR- 120

Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RG         ++    G   VN  A+ +   G RI L   E+ M+++      T LT+ 
Sbjct: 121 RGSIAPGAPEQRAPYHFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 181 QLLEKLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L+ + ++V V   GE G ++    ++D +ILD  L+ + G 
Sbjct: 1   MRILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R   +STPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRRPG 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++   DL + ++ + V   G  I L+ KE Q++  L    +  LT     + 
Sbjct: 121 SPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIYDA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     P    +   +  LRKK+    G    I TV+G+GY L   A
Sbjct: 181 VWGEGSAPSSNTLAAQMRLLRKKIEQ-PGQPVLIHTVYGKGYRLGSAA 227


>gi|261823246|ref|YP_003261352.1| BasR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261607259|gb|ACX89745.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 222

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    ++D+V GL  GADDY++KPF   EL AR+RA++RR++
Sbjct: 61  ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    + LT KE+ ++  L L+  + + +E+    +Y 
Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGSQVHRELLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ + + + + L++ENF     +  ++ I++    E + ++LD+ +  I G E 
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ ++S  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR +  
Sbjct: 65  CMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQKY 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + + +I  GDL++N D + + V  + I LT KE+ ++ELL+  K   L+      
Sbjct: 124 NTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIRKIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V I  LR+K+        YI+T+WG GY
Sbjct: 184 EVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGY 226


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   + V     G   +      E D II+D+ L D+ GF 
Sbjct: 5   KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             + LR A    PV  LS   S EDK+ GL  G DDY++KPF+ +E++AR+ AI+RR++ 
Sbjct: 65  ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL ++ ++  V ++G+ I L+  E++++    L  N  L+K   L H++D
Sbjct: 125 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++ +I  +R+KL+ A   +  I T  G GY++R
Sbjct: 185 YDFDGDSSIVESYISYIRRKLA-AYSSETIIHTKRGFGYIMR 225


>gi|73543119|ref|YP_297639.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120532|gb|AAZ62795.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA  +   L+   F +     G          E+D ++LDL L    G 
Sbjct: 1   MRILLVEDEVELARWVARALEQGGFVIEHVGDGLQAEARLVAEEYDVVVLDLRLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+A+R     TPV IL+   +++++VRGL  GADDY+ KPF   EL ARI A++RRSR
Sbjct: 61  AVLKAMRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G L  + +++   + G  + LT +E  ++  L  R    LTK   L+ ++ 
Sbjct: 121 GRAHPRLQCGTLVFDGESRGFTLDGQPLALTPRESTLLGALLARSGQPLTKAQLLDKVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     I+V + +LRKKL   AG    I T+ G GY+L
Sbjct: 181 LDADVSPDAIEVLVYRLRKKL---AGHGVTIVTLRGFGYLL 218


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ A+A   +  L+   F V   + G  G++     +FD  ILDL L  I GFE
Sbjct: 3   KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  V  D      + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228


>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59
           IL+++DDK +   I L L+++ F    TD   DG+E L K  E  +  +ILD+ +    G
Sbjct: 5   ILIVDDDKEIRDLISLYLEADRF---YTDKAADGVEALIKLEEKKYSLVILDIMMPKKDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E +  +R  K   PV  L+  S   D + GL  GADDYISKPF+  EL+AR++A +RR 
Sbjct: 62  IETIIEIR-KKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRY 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + +I  GDL +N +   V V+G+ + LT  EY+++E++   +N   T E   
Sbjct: 121 TILNLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       I V I KLR+K+   +    YI+TVWG GY
Sbjct: 181 EFIWKEKYSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGY 224


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE+ +E  +  + D IILDL L  I G E
Sbjct: 10  KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R AK +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VAKRVR-AKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128

Query: 120 -RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  A+    + I  GDL ++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|260881100|ref|ZP_05403616.2| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
 gi|260849516|gb|EEX69523.1| transcriptional activator protein Irlr [Mitsuokella multacida DSM
           20544]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDDK L   I+ ML+  +  V     G D  E   + ++D +ILD  +    G 
Sbjct: 2   MRVLLAEDDKRLGKLIQYMLEQNDIQVEWVTNGSDIYEYAMYTDYDILILDWMMPGETGV 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E    LR       + +L+   S+ED+V GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 62  EACSRLRKDGYEKAILMLTARDSVEDRVTGLDAGADDYLVKPFEFAELMARLRALGRRST 121

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +V  G+ ++N  AK ++ +   I L+ +E+Q+ +LL+      + +++ L+ ++
Sbjct: 122 QKIQQDVVEVGEFTLNRTAKVLKKKDKVIQLSPREFQIFDLLAQNIGIVVPRDIILDRIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ID ++  LRKKL    GG   I+TV G GY L
Sbjct: 182 GLESDVSSNNIDSYMKILRKKLDLGDGG-TVIKTVRGVGYKL 222


>gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 224

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +  ++LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217


>gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRILL+EDD  +   ++  L+     V     G DG+ +     FD ++LD  L   + G
Sbjct: 1   MRILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPGGVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  LR     TPV  LS +  ++++V+GL++G DDY+ KPF   EL+AR+ A+ RR 
Sbjct: 61  VRLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRP 120

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A +  +   DL ++L ++TV   G +I +  +E++++E L       +T+ M L  +
Sbjct: 121 AVDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV + +LR+KL      K  I TV   GY++R
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKLDKGQ-DKPLIHTVRNAGYMIR 223


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +++L+++D++ +   I   LK+++F V     GE+ I+L  F+E      +ILD+ +  +
Sbjct: 4   LKVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDL--FFEEKDISLLILDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ VL+++R      PV +L+  S   D++RG + GAD+YISKPF+ + LVAR+ A++R
Sbjct: 62  DGWAVLKSIR-EHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    +  +  G + ++  A +V V G  + L+ KEY+++      +   L++E  LN+
Sbjct: 121 RSGIQQEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     + + ID  + KLR KL +      YI TVWG GY
Sbjct: 181 VWNYDYFGDARTIDTHVKKLRAKLKSKG---EYIRTVWGMGY 219


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 130/236 (55%), Gaps = 14/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ IL+   S  DKV GL+ GADDY++KPF+  EL+AR+RA +RR   
Sbjct: 64  VCREVR-KKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR--- 119

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           H+Q++          I+ G L +  DA  V  +G  I LT +E++++  L+      +T+
Sbjct: 120 HSQTVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   ++
Sbjct: 180 EHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 235


>gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638]
 gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDDK +   ++  L    F+V + TD G  G        +DA++LDL L  + G
Sbjct: 1   MRILLVEDDKLIGDGLKAGLTKMGFSVDWFTD-GGTGKTALYSAPYDAVVLDLTLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++LR  R    S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS
Sbjct: 60  LDILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +S +  G+++++  +   ++ G  + L  KE+ ++ELL       L ++     LY
Sbjct: 120 HGQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D+     ++V +  LR+KL     G ++I TV G GY L
Sbjct: 180 TWDDDVSSNAVEVHVHHLRRKL-----GSHFIRTVHGIGYTL 216


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 ASVDSQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234


>gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 231

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A+   I++ L+ E ++VY    GE+GIE+    +   ++LD+ L  I GF+
Sbjct: 4   KILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVMLPGIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR   
Sbjct: 64  VCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVIP 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++I +    ++  ++     G  + LT  E+ +++     K   +T+E  LN 
Sbjct: 124 EDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLNK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + KI+DV I +LR K+   +    YIETVWG GY
Sbjct: 184 VWGEEFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGY 225


>gi|323529546|ref|YP_004231698.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323386548|gb|ADX58638.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYE-FDAIILDLGLTDI 57
           MR+LL+EDD+ +A  +   ++ E    Y  D  +DG   EL      +D ++LDLGL   
Sbjct: 11  MRLLLVEDDEMIAEPVLDSMRREG---YAIDWAQDGRAAELSLGNGVYDLVLLDLGLPRK 67

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL A R      PV IL+   +++D++RGL +GADDY+ KPF+  EL AR+RA+ R
Sbjct: 68  DGIEVLNAYRSQGGEAPVIILTARDAVDDRIRGLDAGADDYLVKPFDLNELAARVRALSR 127

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G  Q +   G+L+++  A  V   G  + L  +E+ ++++L        TK    + 
Sbjct: 128 RRTGQKQPVYTHGELTLDPAAHEVTKSGVPVPLVPREFTLLQVLIEAPARVFTKAELEDK 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LY   +E     I+V +  LR+K+     G   I TV G GY L+
Sbjct: 188 LYGWGEEVGSNTIEVHVHSLRRKI-----GAEQIVTVRGVGYRLK 227


>gi|260589381|ref|ZP_05855294.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|260540462|gb|EEX21031.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
          Length = 239

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  + + I   L+ E +     + G   I L      D I++DLGL DI G EV
Sbjct: 9   VLVVEDDVPIRNLITTTLEMEKYKFDTAENGNQAIMLAAANNPDIILMDLGLPDIDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R   ++ P+ ++S  S  +DKV  L  GADDY++KPF+  EL AR+RA  RR +  
Sbjct: 69  IRKIRTWSVA-PIIVISARSDEKDKVAALDVGADDYLTKPFSVTELSARLRATTRRIQYI 127

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            HA    +S+   G+L ++  A  V+V G  +HL   EY ++ LL+      LT    L 
Sbjct: 128 MHADNTNESVFKNGNLEIDYSAGVVKVSGEEVHLMPLEYSLLCLLAQNIGKVLTYRFILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++  + V++  LRKKL        YI+T  G GY
Sbjct: 188 KVWQNGITSDISSLRVYMASLRKKLEKDKEHSAYIQTHIGVGY 230


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + LK+  + V     G   ++L      D ++LDLGL D+ G E
Sbjct: 3   RVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGLPDMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      P+ +LS   + ++KV  L +GADDY++KPF  +EL+AR+RA VRR+  
Sbjct: 63  VIRGLR-GWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRRAEP 121

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q       +L+ T   +V+L AK V   G  + LT  E+ ++E+L       ++++  
Sbjct: 122 VGQEGGAEDIALVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNGGRLVSQKQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      E   + V++ +LR+KL        +  T  G GY
Sbjct: 182 LQEVWGPSYGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGY 226


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           R+L+ EDD  L  S+E       + V+    GED + E+     +D ++LD+ L    GF
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R + + +PV +L+     E K+RG   GADDY++KPF+ +EL AR+ A++ RS+
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +   G++SV+   +TV      + LT  E+ ++      +  T+++E  L  
Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLRD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +   + ID  +  LRKK+        Y++TV+G GY
Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGY 235


>gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
 gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia
           ruckeri ATCC 29473]
          Length = 223

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLSVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  +   P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNSGLASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL      K+ I T+ G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKL-QVEHDKDVITTIRGQGY 218


>gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 224

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +   +LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYVLAVLDINMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I+++I +LRKKL    G    I T+ G GYVL
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGYVL 217


>gi|54024784|ref|YP_119026.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54016292|dbj|BAD57662.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 12/223 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           MR+ ++EDD  +  ++   L +  F     D    G EL   +  +DA+ILDLGL D  G
Sbjct: 1   MRLAVVEDDDGVGDALVEALTARGFR---ADRKRRGAELLLDHRGYDAVILDLGLPDGDG 57

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR    S PV IL+  S     VRGL+ GADDY+ KP    EL+AR+  + RR+
Sbjct: 58  LQVLRQLREVS-SVPVLILTARSDERSVVRGLRGGADDYLVKPPRIAELMARLETVTRRA 116

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              AQ     +VTGD+ V+L A+ VEV G  + LT KE++++E L  R    ++++  ++
Sbjct: 117 AVAAQPPRREVVTGDVRVDLVARVVEVAGSPVPLTQKEFELVEALVERPGAAVSRQQLMD 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++        + +DV +  LR KL+        I T+ G GY
Sbjct: 177 RIWGDAFVAVSRSLDVHMTGLRAKLNR----PGLITTIRGYGY 215


>gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 224

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDDK+L   +E+ LK   + VY+ + GE  IE+ +    D +I D+ +  + G+
Sbjct: 2   INILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIMMPKVSGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR +    P+ +++   +IEDK +G   GADDY+ KP + +E++ RI A++RRSR
Sbjct: 62  ELVKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRRSR 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE-YQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++ GD  +N D  T+      I L  KE Y + +LLS  K    T+   +  ++
Sbjct: 122 ISNEHKLIIGDAVLNYDTLTITKGEQIIELAKKEFYLLFKLLSYPKQ-IFTRNQLMEEIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E + + +DV I ++R+KLS+    K  I TV G GY    N
Sbjct: 181 GVDIESDERTVDVHIKRIREKLSDFNEFK--IVTVRGLGYKAERN 223


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 130/239 (54%), Gaps = 12/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   +   L+   ++V     GE+ +E     + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123

Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              +             I  G+L +  +   V  Q  R+ LT KE++++  L+  K   L
Sbjct: 124 SQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           T+++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKSNE 242


>gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA ++  +++ ++++  +   G DG+      E+D I+LD+ L    GF
Sbjct: 1   MNILIVEDEVRLADALGQIMEEQHYHTDIVYTGTDGLYCGLSGEYDVIVLDVMLPGENGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR A + TPV +L+    I DKV GL  GADDY++KPF  EEL+AR+RA+ RR  
Sbjct: 61  DVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYMTKPFVPEELLARVRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL    +      IHL  KE+++++LL       ++K+  ++ ++ 
Sbjct: 121 EVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLKLLMNNAGKIISKDTLISRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   ++ +I  LRKKL      +  I TV   GY L E +
Sbjct: 181 NDSDAEDNNVEAYISFLRKKLF-FLNSRVEIVTVRKVGYRLEEPS 224


>gi|255320575|ref|ZP_05361754.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262374353|ref|ZP_06067628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262380816|ref|ZP_06073968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302376|gb|EET81614.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262297558|gb|EEY85475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|262310610|gb|EEY91699.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED++     ++  L       Y+TD   DG+         E+D IILD+ L  +
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAG---YITDWVTDGLTGKHQALSEEYDLIILDVMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ ++  +R +  + P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++R
Sbjct: 58  NGWNIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLR 117

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +     ++I   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  +
Sbjct: 118 RGQQREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIAS 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   + +  +++V I +LR K+ +    K  I+ + G GYVL
Sbjct: 178 QIWDMNFDSDTNVVEVAIKRLRNKVDSNFTPK-LIQNIRGMGYVL 221


>gi|90020199|ref|YP_526026.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949799|gb|ABD79814.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 12/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL EDD+ LA+ ++  L +  F+V + + G +     +  E   +ILD+ L    G  V
Sbjct: 4   ILLAEDDRRLANLVKDYLGNHGFDVVIEEAGHNVARSVQTLEPALVILDINLPGKDGLSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R  K + P+ +L+   +  D++ GL+ GADDY+ KP     L+ARIRA++RR    
Sbjct: 64  CKDIR-PKFNGPILMLTARDTDADQILGLEYGADDYVIKPAEPPVLLARIRALLRRYNQE 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q     G+L++++ A+ V + G  I L+  E++++   + +    L++E   N +Y
Sbjct: 123 ISKPQDEYTFGELTIHMAARQVFIGGEEIKLSSHEFELLCTFAAQPGKVLSREYLFNIIY 182

Query: 180 ----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               DG D    + IDV I +LRKK+ +A+     I+TVWGRGY+   +A
Sbjct: 183 SRPYDGMD----RTIDVRISQLRKKVGDASDNPTKIKTVWGRGYLFVADA 228


>gi|296115864|ref|ZP_06834488.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295977552|gb|EFG84306.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 222

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 117/217 (53%), Gaps = 3/217 (1%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD+     +   L  EN  V+    G +G+ L +   +D I+LD  L  + G  +L  
Sbjct: 1   MEDDQNTTRYVSEGLLPENIVVHTASDGHEGLRLAQQCRWDVILLDRMLPGMDGLSILTR 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHAQ 124
           LR   ++TP+  L+ M S+  +V GL+ GADDY+ KPF   EL ARI+ ++RR+R  H  
Sbjct: 61  LRGDGMATPIIFLTTMDSVPSRVGGLRQGADDYMVKPFAVRELAARIQVLLRRTRLTHHA 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
            LI   D+ ++L A++V   G ++ L  +E  ++E       T L+++  L ++++    
Sbjct: 121 LLIRIADIELDLLARSVTRNGRKVLLQPQEMNLLEFFMRNPRTVLSRQTLLKYVWNMDFP 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               I++  + +LR+KL   A     I TV GRGY++
Sbjct: 181 VRTNIVETHLSRLREKLGRNAA--PVIHTVKGRGYIM 215


>gi|83718618|ref|YP_441229.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652443|gb|ABC36506.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 241

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59
           ILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P   G
Sbjct: 24  ILLVEDDRMIADGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 80

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR 
Sbjct: 81  IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y
Sbjct: 141 SGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 200

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 201 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 241


>gi|16125553|ref|NP_420117.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|13422643|gb|AAK23285.1| DNA-binding response regulator [Caulobacter crescentus CB15]
          Length = 221

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  +   +   L +  F V +   GED     +  ++  ++LDLGL  + G 
Sbjct: 1   MRALVVEDDPVVGPDLAKALSASGFVVDIARDGEDASFKGEVEDYALVVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R    + PV ILS      +KV G+++GADDY++KPF   EL+AR R +VRR+ 
Sbjct: 61  SVLRRWRANDRAFPVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G L+++    +  + G  I L+  E+++++ L+      ++       LY 
Sbjct: 121 GRTSPVIGAGRLALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+  + +LR+K+     G + IET  G GY+L
Sbjct: 181 VADTADTNAIEALVARLRRKI-----GADVIETRRGFGYLL 216


>gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 11/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L H ++  L S  F V   D+  DGI   +L +   +  +ILD+ L  +
Sbjct: 1   MRLLLVEDHPELLHWLQKALSSSGFAV---DVASDGIVADQLLQTENYALLILDVSLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+  + + ++V+GL SGADDY++KPF+ +EL ARIRA++R
Sbjct: 58  DGLSLLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  Q  +  G L    D   V +    + LT +E  ++  L  R+   ++K+     
Sbjct: 118 RSAGVLQETLTFGSLVYQDDGYFV-LNDEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++   DE   + I++++ ++RKKLS +  G   I T+ G GY L E  KD+  
Sbjct: 177 VFALSDEANPQSIELYVHRIRKKLSGSNVG---ISTLRGLGYRL-ERQKDDMV 225


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + + L L++ +F V+    G++ +E  K  +   +ILD+ + ++ G E
Sbjct: 4   KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +   +   P+  LS  SS++DK+ GL  GADDY++KPF+  ELVAR+ A++RR+  
Sbjct: 64  VLKTIGNDR-DFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + ++I  G+LS + D + +   G+ ++L  KEY+++ +         TK+    +L+  
Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   I V I  LR+K+ +       I T+ G GY+LR+
Sbjct: 183 YYFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYMLRK 224


>gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L   +   LK E + V     G+   E  K   ++ I+LDL L D+ G 
Sbjct: 1   MRLLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNLPDMEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR  K  TPV +L+   ++ D+V GL SGADD++ KPF  +E+ AR+RA+ RR+ 
Sbjct: 61  DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I    + ++  +  V     ++ L+ KE++++  L       +++      LY 
Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E   ++V I  LRKKL       + I TV G GY++ E+
Sbjct: 181 WDSDVESNTVEVHIHHLRKKLD-----PSIIRTVRGVGYIIDED 219


>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
 gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
          Length = 226

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +I   L+ + + V     G+   EL     +D  +LDL L  + G 
Sbjct: 1   MRILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R       V ILS   S+ DKV+GL +GA+DY++KPF  EEL ARIR+++RRS 
Sbjct: 61  DVLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++V   +S++   +   V G +I LT KE  ++E   L     +++E  + H+++
Sbjct: 121 VQENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +     + V I  LRKKL  A    + I T  G+GY LR
Sbjct: 181 MEIDSFSNAVRVHIATLRKKLKQAL-AYDPIVTRIGQGYCLR 221


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL     G+  I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGY 227


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +  +I  G+L +    + V V+G  I LT +E+ + +L          ++  L  
Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 VWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 220


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   ++V +   G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR       + +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +       +++ +   DL +N D + V+     I LT  E+ +++LL       L++  
Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++ G D P     ++V+I  LRKK +   G    I TV G GYVLREN
Sbjct: 181 ILEEVW-GYDFPSSGNALEVYIGYLRKK-TEGGGESRLIHTVRGVGYVLREN 230


>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 228

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 131/231 (56%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           RIL++ED++ LA ++   LK + ++V     G +   L  FY+     D I+LD+ + DI
Sbjct: 5   RILIVEDEEKLARTMGDFLKFQGYDVCCAANGREA--LATFYKERKTLDLILLDIMMPDI 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EVL+ +R    + PV +L+  SS+ED++ G + GADDYI+KP+  E +   I A+++
Sbjct: 63  SGYEVLKEIRKTS-NIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLK 121

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G   +++   D+SVNLDAK V  +   I  T KEY+++          L +   L+ 
Sbjct: 122 RA-GKLANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +++ +D  + +LRKKL+       YI++V+G GY+  E   +E
Sbjct: 181 VWGYDYVGDIRTVDTLVKQLRKKLTEEC---TYIKSVYGVGYLFGEGNYEE 228


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +    ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL+   GG+++ +ETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + 
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + IDV + +LR+KL+ A+  K  ++TVWG GY
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   F V     G   I      E D IILD+ L D+ GF 
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR A  + P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+  
Sbjct: 66  VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM- 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           HA   ++I  G+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H++
Sbjct: 125 HADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+KL   +  +  I+T  G GY+L+
Sbjct: 185 EYDFNGDAGIVESYISYLRRKLDQHS-SEPVIQTKRGFGYMLK 226


>gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+ED+  +A SI+  L   +F V V   G  G  L    ++  I+LDL L  I GF
Sbjct: 4   IPILLVEDEPKVASSIQQWLLEHDFLVDVAPDGAVGRHLALTNDYALILLDLNLPFIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV +A+R  K   P+ +++ + S+++K+ G   GA+DY+ KPF+  EL+AR+R +++ + 
Sbjct: 64  EVCKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKNAV 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  SL+   DL +NLD K V   GH I LT KE+ ++  L   +   ++K   +  
Sbjct: 124 SFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIMEQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLREN 224
           ++D   +    +++V+I  LRKK+      +NY    I T  G GY L  N
Sbjct: 184 VWDLNFDSGTNVVEVYINFLRKKID-----RNYEPKLIHTKPGMGYYLAAN 229


>gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RI ++EDD+ ++  ++ +L+S  +       G++   L K   FD +++DL L    G 
Sbjct: 3   LRIAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGE 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR ++  TPV ++S  S +E K+  L+ GADDYI KPF+ +E++ RI  ++RRS 
Sbjct: 63  RLIGELR-SRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSG 121

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+ ++  GDLS+N +  TV   G ++ LT KE+ +++L         TK      ++
Sbjct: 122 AFAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     E   I+V +  LR KL   + GK++IETVWG GY L+
Sbjct: 182 NEVYYYEDNTINVHVSNLRSKLKKVS-GKDHIETVWGIGYRLK 223


>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 261

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+K++   +   L+  ++ V   + G + ++L +  + D ++LD+GL  + GF V
Sbjct: 23  ILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDGFSV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +  P+ I+S   S  DKV+G   GADDYI KPF+  EL+AR++A +RR + +
Sbjct: 83  CRVLR-EDLHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRREQRY 141

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            Q     +L+ +G LS++++   V      + L+ KE++++ LL+        +++  + 
Sbjct: 142 RQPKRRMALLKSGGLSIDMERHEVSSGTTSLALSRKEFEVLCLLARHAGQVFARDVIFDR 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E  ++ +   I ++R KL+       YI+T+WG GY
Sbjct: 202 VWQDDTESYLETVTEHIKRIRSKLARVDAHTEYIKTIWGVGY 243


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   + V   + G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       +S +   DL ++ D + V   G  I LT  E+ +++LL       L++  
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++ G D P     ++V+I  LRKK    +  +  I TV G GYVLRE+
Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKKTEGESDAR-LIHTVRGVGYVLRES 230


>gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++   +   F V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  SVLKRLRDTH-TTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYVL 219


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + L L+ E F V     G+  +++     +D IILDL L  I G+ 
Sbjct: 6   RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGWT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  K  TPV +L+      DKV G + GADDY+ KPF+  EL AR++A++RR   
Sbjct: 66  VCKKIR-EKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    ++  +L ++  A+ V+V G  + LT KE+ ++  L+  K     +E  L  +
Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +       ++ +D  I +LR+KL  +    +YI TVWG GY
Sbjct: 185 WGYDFYGSLRTVDTHIKQLREKLGRSKAA-SYINTVWGIGY 224


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + 
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + IDV + +LR+KL+ A+  K  ++TVWG GY
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226


>gi|57234028|ref|YP_181944.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224476|gb|AAW39533.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 225

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  LA  I   L+   + V     G+ G E+   Y FD IILD+ L ++ GF
Sbjct: 3   MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R     TP+ +L+      DKV GL  GADDY+ KPF+  EL+AR+RA++RR+ 
Sbjct: 63  AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I    L++N   +     G  I LT KEY ++E L L KN  +TK M   H+++
Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLRE 223
              +    +I+V I ++RKKL N    KN  I+TV G GY++ +
Sbjct: 183 SESDIFSNVIEVLISRIRKKLDN--NNKNSLIKTVKGLGYIIED 224


>gi|332716515|ref|YP_004443981.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063200|gb|ADY66890.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 244

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56
           MR+LL+ED++ +A ++   L    F++ V ++G   ++L +    D +    +LD  L D
Sbjct: 21  MRLLLVEDEREMAAALSAAL--HRFDIIVDNVGT--LDLARHAIMDGVHDLVVLDRQLPD 76

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +++  LR+  ++ PV +L+   ++ D+V GL  GADDY++KPF  EEL+ARIRA++
Sbjct: 77  GDGIQLVEDLRLLPVTPPVIVLTAQGTLADRVNGLNLGADDYLAKPFAVEELLARIRALM 136

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR  G        G L    + + V ++G  I LT +E  ++E L  R+  T+ + +   
Sbjct: 137 RRPAGSVTMTAKLGKLEFCFETREVRIKGEFIALTRRELLILEALLRRQGRTVLRSVLEE 196

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +Y+  DE +   +D  I +LR+KL  A  G   +  + G GY+LR
Sbjct: 197 AVYNFDDEIQSNALDSHISRLRRKLQAADAGLE-VHGIRGVGYLLR 241


>gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
 gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
           315-B]
          Length = 223

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 7/202 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L   I   LK   + V +   G + +EL     +D I+LDL L +I G 
Sbjct: 1   MRILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENYDLIVLDLNLPEIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R     T + ILS  S I+DKV GL  GA+DY+SKPF+ +EL ARIR++ RR+ 
Sbjct: 61  EILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLTRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +LS +   + V++    I LT KE  ++E L L +   +++E  ++H++D
Sbjct: 121 ITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELIDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
                    +D+F   +R  +S
Sbjct: 181 SS-------VDLFSNSIRVHIS 195


>gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 231

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MRILL+ED+  L  +I+ +L   N   Y+ D  +DG E     E     +   I D  L 
Sbjct: 1   MRILLVEDENDLGTAIKRVLIQHN---YIVDWAKDGEEANDLIEMGLNLYTIGIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G ++++ +R    S P+ +L+     EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  KISGIDLIKKIRQQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV----EVQGHR-IHLTGKEYQMIELLSLRKNTTLT 170
            RR        +  G ++++    T+    ++  H+ I LT KE+Q++E      N  +T
Sbjct: 118 QRRFPTINPQKLTVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  L+ L++  +EP   ++   I  LR+KL     G NYIETV+G GY
Sbjct: 178 RDQLLSQLWEWGNEPMSNVVAAQIRLLRRKLEPHC-GDNYIETVYGLGY 225


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +EL L    +   V   G+DG+ +    + D ++LD+ + ++ GFEV
Sbjct: 5   ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELSGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +L+    + DKV GL  GA+DY++KPF  EEL+ARIR ++R +   
Sbjct: 64  LRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTTQA 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A   + +   D+ ++LD          + LT +E+ ++  L   K   LT+E  LN ++ 
Sbjct: 124 AVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E  I+DV+I  LRKK+  +      I+TV G GYVLRE
Sbjct: 184 YDYFGETNIVDVYIRYLRKKMDRSQ--SPLIQTVRGIGYVLRE 224


>gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 219

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DA+ILDL L  I G 
Sbjct: 1   MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218


>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
           Ep1/96]
 gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia pyrifoliae DSM 12163]
 gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 233

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLD-STVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q  +   +         L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQHLQHDNSSPTLEIDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLM 229


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  I GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKIDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+ + 
Sbjct: 66  CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            AQ   ++  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 SAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|300702472|ref|YP_003744072.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|299070133|emb|CBJ41423.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 236

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V     G   +E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVLAVHDGVFAVEHLARQSHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R     TPV IL+   S+++KV GL +GADDY+ KPF   ELVAR++A++RR  
Sbjct: 61  TLLSQYRARDRGTPVLILTARDSLQNKVDGLNAGADDYLLKPFEMLELVARVQALLRRRG 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +    IV G L ++   + + V    + L+ +E+ ++ELL LR+   ++K    +
Sbjct: 121 DNGEPMPRPDIVVGRLRMSGAERRIFVDAAALELSPREFAVLELLMLRQGRVVSKVQLQD 180

Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL          G D      I+V++ ++R+K+      +  I TV G GY+L+  A
Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQT---EAEIVTVRGFGYLLQARA 234


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119

Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           HAQ+            IV G L +  DA  V+ +G  I LT +E++++  L+      +T
Sbjct: 120 HAQTANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +E  L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR N + E+
Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       +Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 ASVDSQETDEKKSQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|330824770|ref|YP_004388073.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329310142|gb|AEB84557.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 227

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    +   +   G DG+ +     +D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGYVADLVPHGTDGLHMALHGAYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR+ 
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRAP 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++++   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGNEAMVLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 181 DMNFDSDTNVIEVAMRRLRMKIDEGHPIK-LIQTVRGMGYVL 221


>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V + + G+ G++     ++D  ILDL L ++ GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICREIRNQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY-- 119

Query: 122 HAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             + LI TG           L ++  A+ V V G   + T KE+ ++  L+   N   TK
Sbjct: 120 --ERLIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTK 177

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     ++      ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 178 DELFKEIWAMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|113868353|ref|YP_726842.1| response regulator [Ralstonia eutropha H16]
 gi|113527129|emb|CAJ93474.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  LA+S+   L    F V     G     L    ++  +ILDLGL  + G 
Sbjct: 1   MRILLAEDNVMLANSLSQALGQAGFTVDCMHDGRSADNLLSTQDYALLILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF+  EL AR RA++RR+ 
Sbjct: 61  EVLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + I  G L  +  ++ V + G  + LTG+E  ++E+L LR    + K      ++ 
Sbjct: 121 GHESTQIACGPLHYDSVSRAVLLHGELLPLTGRERAVLEVLLLRDGRAVNKAALSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 IDESVNPDAIEIYVHRLRKKLD---GSGVAIVTLRGLGYLL 218


>gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 261

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED+  +   +E+ L+ E F+V       + ++L + +    IILD+ L D  G ++
Sbjct: 11  IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70

Query: 63  LRALRV-------AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            R +R        A+I+  P+ ILS  +  ED++ G ++GADDY++KPF+  EL  RI++
Sbjct: 71  CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           I+RRS G + + I  G L ++   + V V  H + LT KE++++ LL+       ++E  
Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG--KNYIETVWGRGYVLRENA 225
           L  ++        + +DV + +LR KL  A  G   N I T WG GY L   A
Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ EDDK + + +++ L+ E + V     G++ ++L     ++ +ILDL +  + G 
Sbjct: 4   IRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L ++L+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDNNYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGY 228


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
            L  LR      PV  L+   ++ D+V+GL++GADDY++KPF+ +E+ AR+  ++R   R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++  A +++   DL++++D+  V   G  I LT  E++++  L       L+K+  L+ +
Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V +++++I  LRKK+   A     I TV G GY++RE
Sbjct: 192 WSYDFGGQVNVVELYISYLRKKID--ADRPALIRTVRGAGYIMRE 234


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L+   F V     G   I      E D I+LD+ L D+ GF 
Sbjct: 9   RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR A  + P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 69  VTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 129 ADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+K+ +A   +  I+T  G GY+L+
Sbjct: 189 YDFNGDAGIVESYISYLRRKV-DAHSSEALIQTKRGFGYMLK 229


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   + V     G   +      E D II+D+ L D+ GF 
Sbjct: 29  KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             + LR A    PV  LS   S EDK+ GL  G DDY++KPF+ +E++AR+ AI+RR++ 
Sbjct: 89  ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL ++ ++  V ++G+ I L+  E++++    L  N  L+K   L H++D
Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++ +I  +R+KL+ A   +  I T  G GY++R
Sbjct: 209 YDFDGDSSIVESYISYIRRKLA-AYSSETIIHTKRGFGYIMR 249


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E F     + GE  IE     + D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ISTP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLR-QTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + I  GDL +++D   V+     + LT +E+++++ L+L++    ++E  L 
Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + +LR+K+ N     +YI T  G GY
Sbjct: 183 KVWGYEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGY 225


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 58  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 117 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 129/222 (58%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL+   GG+++ +ETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223


>gi|332716521|ref|YP_004443987.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063206|gb|ADY66896.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L ++++ V         +EL    + D ++LDLGL D+ G 
Sbjct: 6   VRILIVDDEPPIRKLLRVGLSTQDYAVSEAMNARVAMELMNEDKPDLVVLDLGLPDMSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           E+L   R   +S PV ILS  +     V+ L+ GADDYI+KPF   ELVARIR  +R   
Sbjct: 66  ELLEKWRGEGLSLPVIILSSRTDEAGIVKALELGADDYITKPFGMNELVARIRVALRHRL 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +S+G  + +  TGDLSV+L  + V+V+   + L+ KEY ++ +L       LT    L H
Sbjct: 126 QSQGE-RPVFHTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEH 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D  +  +V+ + V++ +LR+K+        YI T  G GY L+E
Sbjct: 185 VWD--ELTDVQYLRVYVRQLRQKIEKIPDQPRYILTETGVGYRLQE 228


>gi|217968993|ref|YP_002354227.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506320|gb|ACK53331.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 225

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ALA  I   L+ +   V V   G     L +   +D ++LD+GL  + G+
Sbjct: 1   MRLLLVEDDPALAEGIAEFLRGQGDEVEVEGDGMRADRLLQNNGYDFVLLDVGLPGLGGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R +R      PV +++   +++D++ GL  GADDY+ KPF   EL AR+RA+ RR  
Sbjct: 61  ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRG- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G L+++LD +  E+ G  + L+G+E++++E L      T+T+E   N   D
Sbjct: 120 GGAGARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRE---NLQGD 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G        ++V I +LR ++  A      I TV G GY L E +K++
Sbjct: 177 G----SGNALEVCISRLRPRVEAAG---LLIRTVRGFGYRL-ERSKEQ 216


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK     V V + G  G EL +   FD +I+D+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N +++        I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSARQLVCDDLVLNCNSRRARRGEAEIDLTVKEYRLLEYFMTHQGLVLSRLTLLRDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKIDKDF-SKKLIHTVVGSGYIM 222


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           IL+IED+   AH +EL+   L+++ +NV +TD G+ G+E CK    D ++LDL L DI G
Sbjct: 5   ILVIEDE---AHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDG 61

Query: 60  FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            +V + L+  +   + P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+ARI+ ++R
Sbjct: 62  IDVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLR 121

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS+  ++   +I  GD++++ +   V      + LT KE+++++LLS  +   LT++  L
Sbjct: 122 RSKNESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      E + +DV I  LRKK+ +      YIETV G GY L++
Sbjct: 182 DKVWGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229


>gi|288549514|ref|ZP_05967289.2| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
 gi|288318237|gb|EFC57175.1| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC
           35316]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 59  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  +   +    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   ++ I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQDVITTVRGQGYLF 221


>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 229

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ A+A   +  L+   F V   + G  G++     +FD  ILDL L  I GFE
Sbjct: 3   KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  V  D      + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228


>gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
 gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++ H I   LK+  F+V     G    E      FD +I+D  L +I G E
Sbjct: 3   RILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPEISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R  R   I + + +L+     ED +   ++G DDYI+KPF+  EL+ARI+A V+R   
Sbjct: 63  LVRLFRGKGIDSVMMMLTAKDEEEDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++ ++  G L+++L ++ V V G  + LT KE++++E L       L+++  LN ++D 
Sbjct: 123 TSRRVLEMGGLTMDLGSREVSVNGQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWDF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + + +I+DV I KLR KL    G    I ++ G GY L   A
Sbjct: 183 DYDGDTRIVDVHIFKLRNKLQ---GSGVKIASLRGIGYKLEVQA 223


>gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured
           bacterium]
          Length = 253

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   I+  L    F V     G DG       EF  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEIKLGEYIKKGLTEAGFIVDHHTTGLDGYHALMTDEFSVVLMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R  R A   TPV  L+    + DK++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELVRNYRAAGKHTPVLFLTAKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +++   DL +++  +TV      I LT KE+ +++ L  R+   L + +  + +
Sbjct: 121 QSDYKSTIMHIADLKMDIAKRTVHRGDTAIKLTAKEFSLLQFLLERQGEVLPRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 WDMNFDSDTNVIDVAIRRLRLKIDDEFAIK-LIHTVRGMGYRL 222


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 2   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 59  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 118 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 178 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 220


>gi|121595048|ref|YP_986944.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120607128|gb|ABM42868.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    ++  +   G DG+ +    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGAYLRQGLSEAGYSPDLVPNGADGLHMAIHGQYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R  R
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GHA    S +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + 
Sbjct: 119 GHAGSEGSTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHPVK-LIQTVRGMGYVL 221


>gi|221234299|ref|YP_002516735.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|220963471|gb|ACL94827.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 222

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  +   +   L +  F V +   GED     +  ++  ++LDLGL  + G 
Sbjct: 2   MRALVVEDDPVVGPDLAKALSASGFVVDIARDGEDASFKGEVEDYALVVLDLGLPRLDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R    + PV ILS      +KV G+++GADDY++KPF   EL+AR R +VRR+ 
Sbjct: 62  SVLRRWRANDRAFPVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRRAA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G L+++    +  + G  I L+  E+++++ L+      ++       LY 
Sbjct: 122 GRTSPVIGAGRLALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  +   I+  + +LR+K+     G + IET  G GY+L
Sbjct: 182 VADTADTNAIEALVARLRRKI-----GADVIETRRGFGYLL 217


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F+  V   G D +   + ++ D I+LD+ L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGID 63

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R  + ST P+ +L+  +   D V GL+SGADDYI+KPF  +EL+AR+RA +RRS 
Sbjct: 64  VCRTVR--EFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSP 121

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + I  G++ ++     V   G  I+LT  E+ ++  L+ R     ++E  L  +
Sbjct: 122 EEADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 WGYRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGY 222


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L+ E F+V V   G+  +E    +  D I+LDL L  + G E
Sbjct: 5   KVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  +   DKV GL+ GADDY++KPF+  ELVAR++AI+RR   
Sbjct: 65  VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +  G+L ++ +   V  +G  + LT KE++++  L+  +   L+++  
Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++D     + +I+DV +  LR+K+   +    YI+TV G GY
Sbjct: 185 LNAVWDYDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGY 229


>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A      L+   ++V +   G+ G+      +F+ IILDL L +I GFE
Sbjct: 4   RILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R +K + P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR+ A + R   
Sbjct: 64  ICRKIRESK-NIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+      +   +L ++ D++ V ++   I LTGKE+ ++  ++   N   ++E   
Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++      ++  + V I K+R+K+        YIET+WG GY
Sbjct: 183 DNIWGMDACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGY 226


>gi|300777987|ref|ZP_07087845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503497|gb|EFK34637.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 128/223 (57%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA SI   L  E++        ++ +   + +++D I+LD+ L D  G 
Sbjct: 1   MKILIVEDEAELAKSISEYLSGESYLCEHAATFDEAMNKTEAFDYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+  +    V I+S  ++++DK+ GL+ GADDY++KPF+  EL+AR+ +++RR +
Sbjct: 61  KILEELKKQQKQDGVIIISAKNALDDKIEGLKLGADDYLTKPFHLSELMARVYSVIRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             + +++   +L ++L AKTV V    I LT KE+ ++      KN  ++K     HL  
Sbjct: 121 FSSSNVVKQNELQIDLLAKTVTVNNETISLTKKEFDLLIYFIGNKNKVISKSTLAEHLSG 180

Query: 180 ---DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  D  +   +   +  L+KKL +A  G +Y++TV+G GY
Sbjct: 181 DLADMLDNHD--FVYAHVKNLKKKLYDAGCG-HYLKTVYGTGY 220


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWNERAYEINNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S  + Q  + +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  I GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKIDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR   S
Sbjct: 66  CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 STQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  +A  + L L+ E F   V   G  G+E  + ++   ++LD+ L  + G+ 
Sbjct: 4   KVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMDGWT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R  + +TPV +L+     EDKV GL+SGADDYI KPF  +E++ARI A++RR+  
Sbjct: 64  VLKKIR-EESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQ 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +    L +NLD+  + V G R+    KE +++  L+   N   T+   L+ +
Sbjct: 123 EEEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV I +LR+KL   +  +  ++TVWG GY
Sbjct: 183 WGFDYFGDSRTVDVHIKRLREKLEGVS-DQWRLKTVWGVGY 222


>gi|266621451|ref|ZP_06114386.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
 gi|288866892|gb|EFC99190.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
          Length = 228

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK + + I++ LK++ +   + D G  GI        D I+LDLGL DI G EV
Sbjct: 6   ILVIEDDKTIQNFIKITLKTKGYRCVLADDGLTGISYFYANNPDLILLDLGLPDIDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121
           L  +R  +   PV ++S     ++KV  L +GADDYI+KPFN  EL+ARIR  +R RS  
Sbjct: 66  LGQIR-QESEVPVIVVSARGMEQEKVGALDAGADDYITKPFNAGELLARIRVALRHRSSA 124

Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q  +   D L ++ + + V V+G  +HLT  EY+M+ LL       LT       ++ 
Sbjct: 125 PRQEPVFELDTLKMDFEKRKVSVRGEEVHLTPIEYKMLSLLVNNSGKVLTHHYIQQEVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + + VF+  +R+K+   +    +I T  G GY   E+
Sbjct: 185 YDTTDDYQSLRVFMANIRRKIEEDSTKPRFILTEVGVGYRFVES 228


>gi|218134762|ref|ZP_03463566.1| hypothetical protein BACPEC_02665 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990147|gb|EEC56158.1| hypothetical protein BACPEC_02665 [Bacteroides pectinophilus ATCC
           43243]
          Length = 232

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ EDD  + + I + LK+ ++       GE  I        D I+LDLGL DI G EV
Sbjct: 6   IMVAEDDGPVRNLITVTLKAHDYGYVTATTGEGAINTAASVNPDIILLDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R + RR    
Sbjct: 66  IERIRTWS-NVPIIVVSARSEDSDKIDALDAGADDYLTKPFSVEELLARLRVVERRLALM 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     ++   G L +N   +   +    +HLT  EY+++ LL+      LT +  L +
Sbjct: 125 QSSSLTGAVYENGGLVINYAQQCAYLNDTELHLTPIEYKLLCLLAHNTGKVLTHKYILQN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    E ++  + VF+  LRKKL++      YI+T  G GY +++
Sbjct: 185 VWGSNLESDMGSLRVFMAMLRKKLNSGQNSPQYIQTHVGIGYRMQK 230


>gi|254196433|ref|ZP_04902857.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|169653176|gb|EDS85869.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
          Length = 277

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 11/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---G 59
           ILL+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P   G
Sbjct: 60  ILLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDG 116

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR 
Sbjct: 117 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 176

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y
Sbjct: 177 SGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 236

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 237 GWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 273


>gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator
           [Psychrobacter cryohalolentis K5]
 gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++LL+ED++ L   I+  L    F V  Y+T  G DG       EF  +++D+ L D+ 
Sbjct: 1   MKVLLVEDEQKLGEYIKKGLTEAGFIVDHYMT--GLDGYHALMTEEFSVVLMDVMLPDVS 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+++  R A+  TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR
Sbjct: 59  GFELIQRYRAAEKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRR 118

Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +  ++I T DL +++  +TV      I LT KE+ +++    R+   L + +  +
Sbjct: 119 ANQSDYKSTVIHTADLKMDIAKRTVYRGDTLIKLTAKEFALLQFFLERQGEVLPRTVIAS 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++D   + +  +IDV I +LR K+ +    K  I TV G GY L   A
Sbjct: 179 QVWDINFDSDTNVIDVAIRRLRIKIDDGFDTK-LIHTVRGMGYRLEPLA 226


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 58  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 117 RGQPRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DK+ G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIREGS-QVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               + +    DL +N     V      I L+ +E+++++ L L K   L+++  L  + 
Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              Y G D     I+D++I  LR K+      K +I+TV G G++ +
Sbjct: 183 GFDYIGND----NILDLYIKYLRDKVDKPYERK-FIQTVRGIGFIFK 224


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D I+L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A + I   D+ +  DA +++ +G  I LT +E+++   L+      +T+E  
Sbjct: 123 QPAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
           17244]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L+S+ +  +    G+  ++     + D I+LDLGL D+ G ++
Sbjct: 5   ILVVEDDNAVKNLISTTLESKEYKFHTAKNGKQALDEAISRKPDVILLDLGLPDMDGVDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S  +DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 65  IKKIR-GWSNMPIIVVSARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFRRLDYQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   + + G L ++ ++  V V    +HLT  EY++I LLS      LT +  L
Sbjct: 124 NSNYNKNESPIFINGGLKIDYESGCVFVDDKEVHLTPNEYKLICLLSKNVGKVLTHKYIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++    + +V  + V++  LRKK+ N +    YI+T  G GY
Sbjct: 184 NEIWGTAFDSDVASLRVYMATLRKKIENDSEHPIYIQTHIGVGY 227


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 124/232 (53%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+   ++  L+  ++ V     GE  + L    +FD I+LDL L  + G E
Sbjct: 3   RVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K+ TP+ +++  +S  D V GL+ GADDYI+KPF+  E++AR++A++RR   
Sbjct: 63  VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +GH    +  GDL+++ D   V+     I LT KE++++   + R     
Sbjct: 123 EEPTDTVPSQQGHR---LQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVW 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++E  L  ++      + +++D+ +  LR+K+         ++TV G GY  
Sbjct: 180 SREQLLEGVWGFDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTF 231


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   +E  K ++       FD +ILDL L
Sbjct: 23  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 83  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 142

Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R        ++   D+++N     V V+G  ++L+ KE++++EL         ++
Sbjct: 143 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 202

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 203 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGY 250


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + + V V   G+   +L     F  I+LDL L D  G  
Sbjct: 11  RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDEDGIA 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + LR    S P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 71  ICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 130

Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +Q + V   G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 131 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 190

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 191 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 237


>gi|289424086|ref|ZP_06425872.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
 gi|289155511|gb|EFD04190.1| two-component response regulator [Peptostreptococcus anaerobius
           653-L]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L   ++  L S++F +     GE+G+ L +   +D +ILDL L ++ G 
Sbjct: 7   MKVLIVEDNKTLQADMKKEL-SKHFEIETCIDGEEGLYLIEQGIYDLVILDLMLPNMDGM 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L+  R + I TP+ IL+   S++DK+     GA+DY++KPF  +ELVAR  AI+R + 
Sbjct: 66  TILKEARKSGIDTPILILTAKESLDDKMEAFTLGANDYLTKPFYMDELVARTFAILRTNG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R      +   DL ++ + K V +    I L  K+++++E   L K + L KE   + ++
Sbjct: 126 RIKDNKYLEFKDLKIDSEKKAVFIHDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++I++V++  LRKKLS     K YI+T    GY+L
Sbjct: 186 GIDSDATIEIVEVYVSNLRKKLSKFDYDK-YIKTKRKVGYIL 226


>gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   I+V I  LR K++      +YI+T+WG G+
Sbjct: 186 WKEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGF 226


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  + + I + L++E            G+E  K  + D IILD+ +  + G +
Sbjct: 4   KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K S P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RRS  
Sbjct: 64  ACLKIREEK-SMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       + +I  G+L +N D + V VQ   I LT KE+ ++ELL+  K   L+ +   
Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I  +R+K+        YI+TVWG GY
Sbjct: 183 EAVWKEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGY 226


>gi|160938728|ref|ZP_02086080.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438427|gb|EDP16186.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC
           BAA-613]
          Length = 240

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK L  +I+L L+   +       G++       Y +D IILD  L  + G 
Sbjct: 13  MRILLVEDDKELCDAIKLQLERAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR   I+TPV I + +  I D++ GL +GADDY+ KP+   EL+ARIRA+ RR  
Sbjct: 73  GVLGGLRRMNITTPVIITTALDGINDRIDGLDAGADDYLVKPYAAGELLARIRALTRRPG 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS       +++LD +  E+ G    + L+ +E  ++E L   K   L + + L+++
Sbjct: 133 NFKQSPSAACS-NISLDPEKRELTGPLGTLQLSKRESALMEYLIRNKGQVLPRGLILSYI 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E   +D +I  LR++L  + G    I+TV G GY L
Sbjct: 192 WGPDSDVEEGNLDNYIYFLRRRLK-SIGALPQIKTVHGIGYRL 233


>gi|160899237|ref|YP_001564819.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364821|gb|ABX36434.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ AL   +   L      V   D G+         ++DA +LDLGL D+ G 
Sbjct: 1   MRILLAEDEHALGTWLSKALTQVGIQVEWVDNGKLADRRLATEDYDAAVLDLGLPDLSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      P  IL+   S++++VR L +GADD+++KPF   EL AR+ A+VRR+R
Sbjct: 61  VVLERLRARDQRLPALILTARDSVDERVRALNAGADDFLAKPFALAELEARLHALVRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L ++   K   + G  + L+ +EY ++ +L  R     TK+  +  ++ 
Sbjct: 121 GSDHPRLACGPLVLDGVTKQFMLHGAPVPLSKREYSVLRVLIQRSGEPFTKKQIIERVFP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              +  ++  +VFI +LRKKL    G    + T+ G GY L  +A   +
Sbjct: 181 EESDVHLEAAEVFIHRLRKKLE---GSGVSVVTLRGLGYALEIDAPKPS 226


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 2   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 59  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 118 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 178 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 220


>gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
 gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L       YV D  EDGI      +  E+D ++LD+ L   
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAG---YVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+R
Sbjct: 58  DGWTLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + 
Sbjct: 117 RGQPRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 130/231 (56%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+K ++  ++L L  E + V +   G +G+E      +D IILD+ L +I G EV
Sbjct: 5   VLVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPEINGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R     TPV +++  ++  DKV GL  GA+DYI+KPF  EEL+AR+RA +R     
Sbjct: 65  LKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQMEP 124

Query: 123 AQSLIVTGDL--------SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +++   D         S+ L+ KT  V  +G+RI LT KE+ ++  L   KN  L ++
Sbjct: 125 IATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  ++      +  ++DV+I  +RKK+ +    K  I+TV G GY +RE
Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKIDHGY-KKKLIKTVRGVGYCIRE 234


>gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 241

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     ++ DL   GE+G+ L +  ++D +++D  L   
Sbjct: 16  MRLLIIEDDR---ESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKR 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 73  DGLSVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++    GDL ++  +  V   G  + L  +E++++E L       +T+ M L 
Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRGKIDKGF-DRPLLHTIRGAGYMIRDGLR 241


>gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  LA  ++L L++E F+  +   G  G+E     E+D I+LD+ L ++ G E+
Sbjct: 13  LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+ +++    + D V GL SGA+DY++KPF  EEL ARIR ++R+    
Sbjct: 73  CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   IV G L +  +A+ V +    I LT +E+ ++  +   K   +++E  L  ++   
Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 I+DV+I  LR K+ +    K  I TV G GY LR+
Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVK-LIHTVRGIGYTLRD 231


>gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS]
 gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS]
          Length = 219

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L++E   V     G D +   +    D ++LD+ L  + G E
Sbjct: 4   RVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  +   D V GL+SGADDY+ KPF  +EL+AR+RA +RR   
Sbjct: 64  VCRRIR-AESGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  + LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+ +       + TV G GY
Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGY 220


>gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 218

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  ++ SI   L++E + V     G   +  C+ +  D ++LD+ L    G EV
Sbjct: 1   MLVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVMLPGFDGLEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R ++ ++ + PV +L+  +   D V GL  GADDY+ KPF+   LVARI A++RR+ R 
Sbjct: 61  CRRIQASR-AVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++V GD+S++L A+ V   G  +HLT  E+ ++  L+ R    + +E+ L  ++  
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 180 GDGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYAL 214


>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
           [Edwardsiella tarda FL6-60]
          Length = 232

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +    ++ L+ E +     + GE  +EL     F  I+LD+ L  + G +
Sbjct: 4   KILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K STPV +L+      ++V G + GADDYI KPF+  E+V R++AI+RRS+ 
Sbjct: 64  VCKRLREEK-STPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA+ LIV   L ++ DA  V      ++LT KEY+++  L+   +    +E 
Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +    N I TVWG GY
Sbjct: 183 LLKDVWHYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGY 229


>gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 238

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 133/228 (58%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD +LA  I   L    + V V + G+  +EL +    D ++LD+ L +  GF+V
Sbjct: 15  ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEKDGFQV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R  R A  S P+ +++  S   D++ GL+ GA+DY++KP     L+ARI+A++RR+   
Sbjct: 75  CREAR-AFYSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEMD 133

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178
           A    ++ GDL ++  +K+V++Q + I  +  E++++ LL+      ++++  ++ L   
Sbjct: 134 AAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRGI 193

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            YDG D    + +DV +C++RKKLS+       I+T+ G+GY+   +A
Sbjct: 194 EYDGFD----RSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLFAGDA 237


>gi|237731111|ref|ZP_04561592.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
 gi|226906650|gb|EEH92568.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDLGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++S P+ +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 59  DGLSLIRRWRSNEVSLPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQIISLPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPDDVITTVRGQGYLF 221


>gi|206560046|ref|YP_002230810.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036087|emb|CAR51982.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M ILL+EDD  LA ++   L    +   +  D+    + L   +++DA++LDL L    G
Sbjct: 1   MHILLVEDDVMLADAVRAGLAQNGWRADWSADVPAARLALVG-HDYDAVLLDLQLPGASG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F +L A+R    +TPV I++    + D++RGL +GADDY+ KPF  +EL AR+RA+ RRS
Sbjct: 60  FTLLAAMRANYDATPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G     +V  D+ V+   + V   G  + L+  EY+ +  L  R+   +T+      +Y
Sbjct: 120 QGRVSERLVCRDVHVDPARREVTRAGEPVALSIHEYRTLLALMERQGRVVTRAQLEERVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E   I V+I +LR+KL     G   I TV G GY + E 
Sbjct: 180 GNDGAIESNTIAVYIHQLRRKL-----GDELIVTVHGFGYRIGEG 219


>gi|160897159|ref|YP_001562741.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362743|gb|ABX34356.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ L   +   L  E F V     G  G+      +FD IILD  L  I G 
Sbjct: 1   MRILIIEDDEKLVDQLVRGLDDEGFTVDFALDGISGLNKAATQDFDVIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR +K  T V +L+   S+ED+V GL+SGADDY+ KPF   ELVARI+ ++RR  
Sbjct: 61  AVLAALRQSK-QTAVLMLTARDSVEDRVTGLKSGADDYMVKPFAFSELVARIKVLLRRNP 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +  +++   DL ++L  +     G ++ L+ KEY ++ LL  R+   +++    
Sbjct: 120 SLSSAVNVATILRMHDLEIDLARQRAFRAGKKLDLSAKEYSLLILLIRRQGEVISRAELA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++    E E  +++V I +LR K+ +    K  + T+ G GY+L
Sbjct: 180 SQVWSINFESESNVVEVAIRRLRMKI-DEPFDKPLLHTIRGMGYIL 224


>gi|254253958|ref|ZP_04947275.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124898603|gb|EAY70446.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 393

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 132/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 163 MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 222

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 223 GVLRALRAQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 281

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 282 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 341

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    +++  I +LR KL      K  + T+ G GYVL   A+D+
Sbjct: 342 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVL--EARDD 386


>gi|91794808|ref|YP_564459.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91716810|gb|ABE56736.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F++     G+ G++     EFD I+LD+ L  + GF+
Sbjct: 3   RILLIDDDHGLSELLAQLLELEGFSLTQAYDGQQGLDNALKQEFDLILLDVMLPKLNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ALR  K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR++ 
Sbjct: 63  LLKALRQHK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQK 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      +  GD+ ++   + V  +   I LTG E+ ++  L  +    ++KE     +
Sbjct: 122 PANEPRDELKCGDIKLDPARQEVSCKEQLILLTGTEFSLLHALIKQAGELVSKETLSETV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +  P  + +D+ +  LRKK    A G+  ++T+ G+GY+
Sbjct: 182 LHKKLMPFDRSLDMHLSNLRKKFPERADGRPRVKTIRGQGYI 223


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E ++V     G++ +++      D ++LD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q+          I  GDL ++  A  V   G  I LT +E+Q++  L+      +T+E
Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   F       G   + +      D +ILD+ +  + G  
Sbjct: 47  KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R  KI TPV +L+  S   DK+ GL+ GADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTMP 166

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +QS  V GDLS++  + TV+V G    LT KE+ ++  L   K   L++E  L  +
Sbjct: 167 RTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQKV 226

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     E + +D  I  LR  L      +NYI TVWG GY
Sbjct: 227 WNYDYYGEDRTVDTHIKMLRGHLGPC---RNYIVTVWGIGY 264


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD+ +A SI+  L+ E F + V  +    +EL K  +F  +ILD+ L D  GF
Sbjct: 2   IRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTLPDGNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   ++ A+   PV  L+ +   E+ V+G + GAD+YI+KPF   EL++RIR ++R + 
Sbjct: 62  ELFEEIK-ARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTG 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    + +NL+   V     RI LT  EY+++ L    K   LT+   L+ +
Sbjct: 121 ILEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGI 180

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D   +      + V+I +LR+K+         I+TV G GY
Sbjct: 181 WDESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGY 222


>gi|254451168|ref|ZP_05064605.1| two-component transcriptional regulator, winged helix family
           [Octadecabacter antarcticus 238]
 gi|198265574|gb|EDY89844.1| two-component transcriptional regulator, winged helix family
           [Octadecabacter antarcticus 238]
          Length = 221

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  I  +L+SE +   +   GEDG E      + A ILD+GL  + G 
Sbjct: 1   MRILIVEDEARIADLIADVLQSEGYIAEIASDGEDGWEKGGTESYSAAILDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   ++ PV +LS  SS  ++V G+ +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLRNWRKEGVNFPVMLLSAKSSWNERVEGIDAGADDYMVKPFQMEELLARLRALLRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++L    + ++G RI +T  E++++  L   K   + + +   ++Y 
Sbjct: 121 TQKMTALSVGGLQLDLLQMRITLEGRRIKVTPLEFRLLSYLLHHKGEVVAQSVLAENIYF 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              EP+   I+V I +LR+KL     G + IET  G GYV+ E
Sbjct: 181 RDQEPDSNAIEVLIGRLRRKL-----GSDLIETKRGFGYVIAE 218


>gi|170768311|ref|ZP_02902764.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
 gi|170123077|gb|EDS92008.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A      I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHEVITTVRGQGYLF 220


>gi|92118761|ref|YP_578490.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801655|gb|ABE64030.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED + LA  +   L++  + + V     D         + A+ILDLGL D  G 
Sbjct: 1   MRVLIVEDSEELADLLAKGLQAAGYEIDVLANVSDAYSGLGTTRYAALILDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K   P+ +L+    +ED+V GL+SGADDY+ KPF  +ELVAR+ A++RR  
Sbjct: 61  SILRELRHRKDPIPILVLTARGGVEDRVNGLRSGADDYLVKPFAFDELVARLEALLRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   +++ + + + V V     +L+ +E  ++ELL  RK + ++K++  + ++ 
Sbjct: 121 QLLGSSLRLSNVTFDTEGRQVFVDMKPQNLSAREIAVLELLMRRKGSVVSKKLLEDQIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     ++V++ +LRK+L +  G K  I T+ G GYV+ E+
Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLD-IGAKVRITTIRGVGYVMMES 223


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 11/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+ A++  +   L+ E F V     G   +E    +    +ILD+ +  + G+ 
Sbjct: 3   KILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  K + PV +L+ +  I+ K++GL +GADDYISKPF  +E++AR+ A++RRS  
Sbjct: 63  VLEKIR-EKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               + +I  G L++N DA T+ + G  I LT ++  ++  L+ R N T T++  + H+ 
Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              YDG D    + +D+ + ++R+ L++    +  I T+ G GY
Sbjct: 182 GMDYDGSD----RAVDLAVKRIRQALTDWPETEGEIRTLRGMGY 221


>gi|49081878|gb|AAT50339.1| PA0756 [synthetic construct]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL+ED   LA S+   LK   + V   DL +DG+         E+   ILD+GL  +
Sbjct: 1   MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEVL  LR    + PV +L+    ++D+V GL  GADDY++KPF   EL AR++A++R
Sbjct: 58  DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    + L   G L  +L  +   +    + LT +E  ++E +  R    ++KE     
Sbjct: 118 RSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++   +E     I++++ +LRKKL    GG   I T  G GY LRE   D
Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGY-LREAQGD 223


>gi|325263927|ref|ZP_08130660.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324030965|gb|EGB92247.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/208 (34%), Positives = 115/208 (55%), Gaps = 12/208 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+L+IED+  LA  I+   + EN+   ++  GEDG     +Y+     +D ++LD  L 
Sbjct: 1   MRVLIIEDEAGLADVIKAEFEDENYEADISGDGEDG-----YYQGLTDIYDVVVLDGMLP 55

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G++VLR  R   I TPV +L+  S + DK++GL +GADDY++KPF  EEL+AR R I
Sbjct: 56  SMDGYDVLRKWRAEGIETPVIMLTARSELSDKLKGLDTGADDYLTKPFEMEELLARARVI 115

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            RR           GD+S++L    +  Q  G  + L  KE+Q++E L    +  +T+E 
Sbjct: 116 TRRQGKMETERPGFGDISLDLRTCILYNQDSGAEVQLGKKEFQILEYLIKNSSQIVTREQ 175

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL 201
            +  L+      E   ++V+I   R+K+
Sbjct: 176 IVQKLWGYDCNAEYNNVEVYISFTRRKM 203


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL IED+ A+   +   L+ E +NV   + G   ++      FD IILD+GL D+ GFE
Sbjct: 6   QILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPDLNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+  L+      D+V GL+ GADDY +KPF+  E+VARI+AI RR   
Sbjct: 66  VCKQLR-QKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             QS            +  +   S N  +  ++  G  + LT  EY+++ LL        
Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  ++H+++  +    + +D  I  LR+KL       + I T  G GY L
Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ + + +    D +ILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   + S IV GDL +  D    + +G  + LT +E++++  L+      +T+E 
Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232


>gi|157375111|ref|YP_001473711.1| two component transcriptional regulator, winged helix family
           protein [Shewanella sediminis HAW-EB3]
 gi|157317485|gb|ABV36583.1| two component transcriptional regulator, winged helix family
           protein [Shewanella sediminis HAW-EB3]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LL+EDD  LA ++   L+ E+        G  G+ L +  ++  IILDL L  + G 
Sbjct: 2   LNLLLVEDDIDLATAVIEYLEMESIQCDSAYNGLTGMNLIENNDYQVIILDLNLPKMDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     TPV +L+   S+ DKV G  +G DDY+ KPF  EEL+ RI+A+  R  
Sbjct: 62  EVCKKMRELGDDTPVLMLTARDSLNDKVAGFNAGTDDYLVKPFAMEELIVRIKALSLRRS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L V GDL+V+L  K     G  + L+   ++++E+L  +    +++E  +  L+ 
Sbjct: 122 GQINNLSV-GDLTVDLVRKIAVRGGRELKLSPSSFKLLEILMRQSPMPVSREHLMQGLW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G D+P+   + V I KLRK+L   A     + TV G G+ +RE+
Sbjct: 180 GDDQPDSNSLKVHIYKLRKELETNADTP-LLHTVTGHGFSIRES 222


>gi|70725032|ref|YP_251946.1| hypothetical protein SH0031 [Staphylococcus haemolyticus JCSC1435]
 gi|68445756|dbj|BAE03340.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 231

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+A+ H I++ L    + V     G++     +  + D I+LDLGL DI G  +
Sbjct: 5   LLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTEQPDIILLDLGLPDIDGLSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++  R   + TP+ ++S  +  +  V  L  GA+DY++KPFN +EL ARIR  +R SR  
Sbjct: 65  IQQFR-DFVDTPIIVISARTEEQTIVEALDRGANDYMTKPFNIDELRARIRVALRMSRST 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS    G L+++ DAK+V V    +HLT  E+Q++ +LS      LT ++ L  LY 
Sbjct: 124 ETIQSRFTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILSHHVGKVLTYQVLLKSLYG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             +  E+  + V +  LRKKL+
Sbjct: 184 YVNHTEMAALRVHMASLRKKLN 205


>gi|323700473|ref|ZP_08112385.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323460405|gb|EGB16270.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 236

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 16/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  LA  ++  L  E   +     G  G+E+ +  +++ +ILD+ L D  GF V
Sbjct: 4   LLLIDDDPELAEMLQAYLGGEGLGLDAAVSGSAGLEMARKGDYELVILDVMLPDTSGFNV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A    PV +L+G     D+V GL+ GADDY+SKPF   EL+ARIRA++RR    
Sbjct: 64  LTKLR-AVSGVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFQLRELLARIRAVLRRYGSG 122

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           A+             I  G++ +N +A+ + + G  +HLT  E+ ++E+L+L     + +
Sbjct: 123 AEEAGDMAAVKAKPGIEIGEVHLNRNARNMTIGGLPVHLTSTEFDILEMLALNMGNVVDR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +       ++ +  +++V +  LRKKL         I+T+ GRGY+L
Sbjct: 183 VSLMEKALGRNEDFDDYVLNVHMSNLRKKLDRNVS----IKTIRGRGYLL 228


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L++E ++      G++ + + + +  D ++LD+ +  + G 
Sbjct: 20  IRVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGM 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L  +R A    PV  L+   ++ED++ G+ +GADDY++KPFN EE+V R+R + RR  
Sbjct: 80  ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHV 139

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A   +  GDLS++ ++  VE  G  I LT KE++++  L       L+K   L+ 
Sbjct: 140 AAIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQ 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++         +++++I  LRKK+ +   G+  I TV G GY ++ +
Sbjct: 200 VWSYDFGGNGSVVEIYISYLRKKIDSL--GEPLIHTVRGVGYTIKAS 244


>gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
 gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
          Length = 219

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|255655846|ref|ZP_05401255.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450875|ref|ZP_06892624.1| response regulator [Clostridium difficile NAP08]
 gi|296879124|ref|ZP_06903119.1| response regulator [Clostridium difficile NAP07]
 gi|296260247|gb|EFH07093.1| response regulator [Clostridium difficile NAP08]
 gi|296429667|gb|EFH15519.1| response regulator [Clostridium difficile NAP07]
          Length = 232

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDDK +   I   L +++++V     G++GI +   Y  D ++LDLGL D+ G EV
Sbjct: 6   ILLVEDDKTIRKFISTALLTQDYDVKEAITGKEGISIAVSYSPDVVLLDLGLEDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++A+R    + P+ ++S      DKV    +GADDY++KPF+  EL+AR+R   R S+  
Sbjct: 66  IKAIRQFS-NIPIIVVSAREQDRDKVEVFDAGADDYLTKPFSIVELLARVRVAFRHSQVE 124

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q      S      L ++ D + V V    +HLT  EY ++ LL+      LT    + 
Sbjct: 125 VQQKDDVKSTFEVDKLLIDFDKRKVIVDDIEVHLTPIEYNILSLLAKHHGKVLTHNFIIK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E K + VF+  LR+K+        YI T  G GY L +
Sbjct: 185 EIWGSVIGNETKSLRVFMATLRRKIEKQPANPRYIITEVGVGYRLND 231


>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 249

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +I + EDD  +A  I   L+ + ++V V+  G+  ++     +F  +ILD+ +  + G 
Sbjct: 25  FKIGIAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDNDFQLLILDVMMPGMSGV 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R+LR  +   P+ +L+ + SI+DKV GL SGADDY+ KPF+ +EL+ARI A++RR +
Sbjct: 85  EICRSLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALLRRHK 144

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A      L+   D+S++  +K V   G  I LT KEY ++EL     N  L+++    
Sbjct: 145 KEAVVQEDHLLRFDDISLDTYSKEVSRAGQPISLTAKEYLLLELFLRNPNRLLSRQYIAE 204

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   +    +IDV++  LR K+      K  I T  G GY+L+
Sbjct: 205 RVWDVNFDTGTNVIDVYMNFLRNKIEKGFDRK-LIHTKIGMGYILK 249


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ V  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|111021968|ref|YP_704940.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821498|gb|ABG96782.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 238

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F V     G D + +      DA++LD+ +  I G  V+ ALR      P
Sbjct: 21  SLERGLRLSGFTVLTAVDGADALRVVSERRPDAMVLDMNMPVIDGTGVVTALRAMNNDIP 80

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSL 126
           +C+LS   +++D++ GL+SGADDY+ KPF   EL+ARIRA++RR        +   A   
Sbjct: 81  ICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTAAAPAGSPATPP 140

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I  G L +   A+ V + G  + LT +E++++E+L+      L++E  L  ++      +
Sbjct: 141 IRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFVAD 200

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++DVF+  LR+K     G    + TV G G+VLRE +
Sbjct: 201 TNVVDVFVGYLRRKF-EVGGQPRILYTVRGVGFVLREPS 238


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L   +   LKSE F V     GE G++      +  ++LD+ L  I G +
Sbjct: 3   QILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGISGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   PV +L+      D++ GL+ GADDY+ KPFN  EL+ARI+AI+RR +G
Sbjct: 63  VLRRLR-PQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRVQG 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++  GD++++  A+TV+  G ++  T  E+ ++  L       + +E     + 
Sbjct: 122 GQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAERVL 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             R  P  + ID+ I K+R+KL + +     I+TV G GY+
Sbjct: 182 GRRFSPFDRSIDMHISKIRRKLLDES--DELIKTVRGTGYI 220


>gi|318080665|ref|ZP_07987997.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 253

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G 
Sbjct: 19  VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ 
Sbjct: 79  SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 138

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 139 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LR+K+    G +  I T  G GY+++
Sbjct: 199 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 240


>gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 5/219 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFEVLR 64
           +ED++++   I + LK   F V     G + +  L    + D  +LD+ +  + GFEV R
Sbjct: 1   MEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122
            +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR   H  
Sbjct: 61  RIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHRE 120

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+    +G  +++L AK  +  G  I LT  E+ +I+    ++NT L++++ L+H++ 
Sbjct: 121 TAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + KI+DV I +LR+K+ N      +++TVWG GY
Sbjct: 181 KEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGY 219


>gi|302520395|ref|ZP_07272737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429290|gb|EFL01106.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 256

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G 
Sbjct: 22  VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ 
Sbjct: 82  SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 141

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 142 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LR+K+    G +  I T  G GY+++
Sbjct: 202 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 243


>gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 262

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +LK E F  +     G DGI+ CK    D ++LD+ + DI GF
Sbjct: 32  KILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVMMPDIDGF 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R      P+  LS  S   DK+  L  GADDY++KPF+ +E+  RI+A +RR+ 
Sbjct: 92  DVCKRIREFSF-VPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150

Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                L V       GD+ ++     V   G  I LT KEY ++  ++   N  LTK+M 
Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N ++D   E     I V + KLR+KL        YI TV G GY LR
Sbjct: 211 CNEVWDDDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKLR 258


>gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 124/228 (54%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDL---GEDGIELCKFYEFDAIILDLGLT 55
           M++L++ED+  L  SI     +E   +  YVTD    G+D I++     +D IILD+ L 
Sbjct: 1   MKVLIVEDELDLLDSI-----AEGLTLMGYVTDKASNGDDAIDMAFVESYDLIILDVNLP 55

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              GFEVLR++R       + +L+  S IED+V+GL  GA DY+ KPF  +EL AR+R+ 
Sbjct: 56  GKDGFEVLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSH 115

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R  + H  ++I    LS +   +     G  I LT KE  ++E L L     ++ E  +
Sbjct: 116 LRGKKIHQSTVINMSGLSFDTIKREASYGGKIIPLTVKETGILEYLFLNSERFISAEELI 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++D   +     + V +  LRKKL +A  GKN IE V G+GY + E
Sbjct: 176 EHVWDSNADGFSNTVRVHMSSLRKKLRSAC-GKNLIENVIGKGYRIHE 222


>gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 242

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L+   F V   D  ++G+ L +  + +    I+LD+ + ++ G
Sbjct: 5   ILVVDDDPVVRELVSGYLQGRGFKV---DTLQNGLALQRRLQDERPALIVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
              LRALRVA    PV +L+  S   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+  
Sbjct: 122 GTIAPSAPEHRAPYRFGRFEVNFPARELRRDGERISLRSSEFAMLKVFVSHAMTVLTRAQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 182 LLEKLHGNSEVHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi
           103S]
          Length = 218

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  ++ SI   L++E + V     G   +  C+ +  D ++LD+ L    G EV
Sbjct: 1   MLVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVMLPGFDGLEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R ++ ++ + PV +L+  +   D V GL  GADDY+ KPF+   LVARI A++RR+ R 
Sbjct: 61  CRRIQASR-AVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++V GD+S++L A+ V   G  +HLT  E+ ++  L+ R    + +E+ L  ++  
Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 180 GDGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYAL 214


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +   L+ E + V V D G DG+ +   +  D ++LDL L  + G E
Sbjct: 3   RILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    S PV +L+      DKV GL+ GADDY++KP++  EL+ARI+A++RR   
Sbjct: 63  VCREIRRTS-SVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121

Query: 121 -GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G A+  + +    L ++++   VEV+G  + L  KE++++E+L    +  LT+   ++ 
Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      + K +DV + +LR K+ +      ++ TV G GY     A
Sbjct: 182 VWGANYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFESGA 229


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A  +E +LKSE++ V + + G+  +E         I+LD+ L  + G++
Sbjct: 4   RILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLSGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + LR  KI+TP+ +L+      DKV GL  GADDY++KPF   EL+ARI+A++RR  +
Sbjct: 64  VCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIEK 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIH--LTGKEYQMIELLSLRKNTTLTKEMF 174
             A+S+       GD ++  D +T E++  ++   LT +E ++++L        L+++  
Sbjct: 124 PAAESIGKESFTIGDATI--DPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LN ++        + +D  I +LRKKL +      ++ TV G GY
Sbjct: 182 LNDVWGYGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGY 226


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119

Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           HAQ+            IV G L +  DA  V+ +G  I LT +E++++  L+      +T
Sbjct: 120 HAQTANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +E  L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR N + E+
Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237


>gi|167035384|ref|YP_001670615.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861872|gb|ABZ00280.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+ L LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGADNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 19/233 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA------IILDLGLT 55
           R+L++EDDK++  ++   L +E + V V   G++  E   F +FD       I+LDL L 
Sbjct: 14  RLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEA-EARVFSQFDTRKKIDLIVLDLMLP 72

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ G E+ R +R   I TP+ I+S   S  D+V GL+ GADDY+ KPF   EL+AR RAI
Sbjct: 73  NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEV--QGHR-------IHLTGKEYQMIELLSLRKN 166
           +RRS  + +    T DLS  L  K + +  Q +R       I+L  KEY+++EL      
Sbjct: 133 LRRSETNHEK---TQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPK 189

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      + K +DV I  +R+K+ + A   +YI TV G GY
Sbjct: 190 RVWSRDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGY 242


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+++   +   L+   F+V +   G +G++  +  E+D +ILD+ L  + G+E
Sbjct: 3   KILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  K   PV I+S      DK+ GL+ GADDYI+KPF+  ELVAR+ A + +   
Sbjct: 63  ILKKIRDEK-DIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +  S+ + G L +  D++ V V G  ++L  KE+ ++  L+   N   ++E 
Sbjct: 122 LRNKYGNNNVNSITIRG-LEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + ++      +   + V I ++R+K+ +      YIETVWG GY LR
Sbjct: 181 IFDRVWGMDALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRLR 229


>gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE G+        D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAVN-DSVDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  K  TP  +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+  H
Sbjct: 63  LKKLR-EKWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGNH 121

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            QS    +I   DL +    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 TQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL   + GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224


>gi|332559743|ref|ZP_08414065.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277455|gb|EGJ22770.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +G +         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGTDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVR-GWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E + + + V+I +LR KL + A    +I T  G GY  R+ 
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRDR 228


>gi|318060761|ref|ZP_07979484.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 256

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G 
Sbjct: 22  VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ 
Sbjct: 82  SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 141

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 142 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LR+K+    G +  I T  G GY+++
Sbjct: 202 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 243


>gi|300785941|ref|YP_003766232.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795455|gb|ADJ45830.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  +   L+   F V V   G   ++ C    +D ++LD  L  + G 
Sbjct: 1   MRVLLVEDEQPLAKYVAAGLRKHGFAVDVAFDGRTALDKCTVTPYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L     +  V +L+   ++ED+V GL  GADDY+ KPF   ELVAR+RA+ RRS 
Sbjct: 61  AVCREL-AGHGTARVLMLTASGTVEDRVEGLTLGADDYLGKPFAFSELVARVRALSRRST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++   +T E  G  +HLT KE+ ++E L       ++ E  L+ ++D
Sbjct: 120 PAMPPVLRAGGVVLDPARRTAERAGRLLHLTPKEFGVLEHLLAADGAVVSAETLLDKVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + + +  LR+KL    G    IETV   GY
Sbjct: 180 EHADPFTNAVRITVGTLRRKL----GDPPPIETVPSAGY 214


>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
 gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
          Length = 247

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L+ E F V+  D GE+ +E+    +    ILD+ +  + G E+
Sbjct: 21  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L+++ +N   T E   
Sbjct: 140 NQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243


>gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O127:H6 str. E2348/69]
 gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82]
          Length = 219

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A   +  L+   + V +   G  G++      +D II+DL L    G+E
Sbjct: 3   QILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           ++R +R  K   P+ I+S  S   DK++GL  GADDY++KPF+  ELVARI++ + R   
Sbjct: 63  IVREVR-EKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRYER 121

Query: 119 -SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            S    Q ++I    L +  D+  V V G  + LT KEY+++  L+   N   TK+   +
Sbjct: 122 LSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQLFD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V I KLRKK+    G   YIET+WG GY
Sbjct: 182 RIWGEDYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGY 224


>gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248


>gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
 gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia
           kristensenii ATCC 33638]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E   IDV + +LRKK+     G+  I T+ G+GY    N
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKMQAKHEGE-VITTIRGQGYRFDAN 223


>gi|229099550|ref|ZP_04230478.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|229118615|ref|ZP_04247967.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228664807|gb|EEL20297.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228683846|gb|EEL37796.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 220

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E + +        G+ +    ++D IILD     I G E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGYFILKLHNENQGLNIIYEQDWDIIILDWDSLSISGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RG 121
            +R+ K +TP+ I++   S +D + GLQ+GADDYI KPF KEELVAR++AI+RRS   + 
Sbjct: 61  QIRLVK-TTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYIQQ 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 NEMNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++D++I  +RKKL      + YI+T+ GRGY +
Sbjct: 180 NVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSM 218


>gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           CFT073]
 gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073]
 gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU
           83972]
 gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 219

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|333025862|ref|ZP_08453926.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745714|gb|EGJ76155.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 240

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G 
Sbjct: 6   VRVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+ 
Sbjct: 66  SVLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAG 125

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 126 AGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LR+K+    G +  I T  G GY+++
Sbjct: 186 WSYDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLIK 227


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 131/219 (59%), Gaps = 8/219 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +D  I  LR+KL +    ++YI+TV G GY
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211


>gi|283471296|emb|CAQ50507.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 231

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ H +++ L  + +NV   D         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++  +   G LS++  +K+V +    +HLT  E+ ++ELLS  K   LT EM L  +Y
Sbjct: 123 HQETNFVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|182440678|ref|YP_001828397.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178469194|dbj|BAG23714.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L+   F V       +   L     +D ++LD  +      
Sbjct: 1   MRVLLVEDDDDLRDVIAAGLRDGGFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R A  S PV  L+ + S+++++RGL+SGADDY++KPF+  ELV R+R + RR+ 
Sbjct: 61  APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   D+ +++    V   G  + L+ KEY +++ L + ++T +T+   L H +D
Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++D  +  LR+KL    G    + TV G+G++L  +
Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220


>gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK LA  IE +L+ E   V V   GE G+++     +D  ++D  L    G 
Sbjct: 1   MRILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + RA R A++ T + +L+    IEDK+ G +SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SLCRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +  G + ++L + T      R+ LT  E++++E L      TLT++  L++++
Sbjct: 121 PNLGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +++DV++  LR+KL NA G  + I TV G GY L
Sbjct: 181 SFEHDVQPQMVDVYVSYLRRKL-NAPGEADPIVTVRGIGYRL 221


>gi|186477526|ref|YP_001858996.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193985|gb|ACC71950.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 248

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 113/211 (53%), Gaps = 12/211 (5%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPGFEVLRALRVAKISTPVC 76
           L+   F V V    E+G+ L +  + +    ++LD+ + ++ G   LRALR+A  S PV 
Sbjct: 22  LQGRGFTVSVL---ENGMALQQALQLERPALVVLDIMMPELDGISALRALRLAGDSIPVI 78

Query: 77  ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA------QSLIVTG 130
           +L+  + + D+V GL+ GADDY+ KPF+  ELVARIR+++RR    A      ++    G
Sbjct: 79  LLTARADVIDRVIGLELGADDYLGKPFDPSELVARIRSVLRRRESAAPGAPENRAPYRFG 138

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
              VN  A+ +   G RI L   E+ M+++      T LT+   L  L+   D    + +
Sbjct: 139 RFEVNFPARELRRDGERIALRSSEFAMLKVFVSHAMTVLTRAQLLEKLHGSTDTHRNRSL 198

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LR+ +        Y++TVWG+GYV 
Sbjct: 199 DVSIWRLRRLIEVDPSEPRYVQTVWGKGYVF 229


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++DD  LA  +   L+ + + V   + G   +   +    DA++LD+ L D  G 
Sbjct: 22  VRVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR L   +    V +L+   ++ED++ G+ +G DDY++KPF+ EE++AR+R ++RR+ 
Sbjct: 82  TVLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAG 141

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q      +  GDL ++ DA+ V   G  I L+  EY+++  L       L+K   L+
Sbjct: 142 MARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILD 201

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++         +++++I  LRKK+   AG +  I TV G GYVL+ 
Sbjct: 202 RVWSYDFGGRAHVVELYISYLRKKVD--AGREPMIHTVRGAGYVLKP 246


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 5/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+++DD ALA  + ++L  E ++V  T  G+ G  L  F     D ++LD+ L    G 
Sbjct: 16  VLVVDDDSALAEMLGIVLTKEGWSV--TTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGM 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R A+   P+ +L+  +   D V GL++GADDY+ KPF  +EL+AR RA +RR  
Sbjct: 74  SVCREIR-AESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  GDL++++ +  V+ QG  I LT  E+ ++  L+ +    L++E  L  ++ 
Sbjct: 133 PPQQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   + ++++V + +LR K+ +       ++TV G GY
Sbjct: 193 YQHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGY 231


>gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
 gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 132/226 (58%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDDK++   +   LK+E +  +     ++  +       D I+LDL L D  GF+
Sbjct: 4   QVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + +  AK + P+ IL+  + + DKV GL+ GADDYI+KPF+ +E+ +RI+A+ RR   
Sbjct: 64  FCKDIN-AKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEK 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+ +   + +  ++ +N + +TV      I L  KEY+++E     +N   ++E  ++
Sbjct: 123 SASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++   + +++ +D+ I ++R KL +  G  + IETV+G GY++R
Sbjct: 183 NIWEFSYDGDIRTVDIHIRRIRSKL-DTNGHPSVIETVFGVGYMMR 227


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 122/236 (51%), Gaps = 21/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + + L++E ++V +   G D   L    EFD  +LD+ L D+ GFE
Sbjct: 5   RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR +R  + + PV +L+   S  DK+ GL  GADDY+ KPF   ELVAR +A +RR   
Sbjct: 65  LLRTIRTER-TYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123

Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +           A  +I    LS+N DA+TV V    +  T  EY ++  L+  +   + 
Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183

Query: 171 KEMFLNHLYD-----GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++D     G +      + V I  LR+KL + A    +I+ +WG GY +
Sbjct: 184 VEELFRAVWDEEFMAGSN----NTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTI 235


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ LK + F V     G + +E  + ++ DA ILD+ +  + G+E
Sbjct: 10  RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H      + +V  DL++N D   V   G  + L+  E+ ++  L L     L+K   LN+
Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+
Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKVDTQEPA--LIQTVRGVGYVLRK 233


>gi|254248501|ref|ZP_04941821.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124875002|gb|EAY64992.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 231

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV  L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRAQK-QTPVIKLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRASRDGARLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++  I +LR KL      K  + T+ G GYVL
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFADK-LLHTIRGMGYVL 219


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V     G+DG+   +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               +R  A  + V G   + LD  T E  V G  I LT +E+ ++   +       ++ 
Sbjct: 126 LSRDTRAEAGRVEVGG---LRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRT 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 183 DLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231


>gi|70731532|ref|YP_261273.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345831|gb|AAY93437.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++   V           +    +FD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R   +  PV IL+   S+ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLKQQRQQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +   +   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+ L   ++  L+   F V  T  G++ +E  K   +D IILDL L    G 
Sbjct: 1   MVVLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGL 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ + +R   I+   PV +L+ +S  + KV+G   GADDY++KPF+ +EL+ARI A++RR
Sbjct: 61  DICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120

Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + G+ +  I+  D +  +  +K+V V G+ I+LT  E+Q++E          ++E  L  
Sbjct: 121 A-GYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEK 179

Query: 178 LYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G D  E  + +DV+I +LRKKL +      Y++T+   GY L
Sbjct: 180 IW-GHDHNETTRTVDVYISRLRKKLGDKG---KYLKTLPRLGYKL 220


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           RIL+IEDD    H  EL       N +  D+ +DG++  K      +D II+DL L    
Sbjct: 3   RILIIEDD---LHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E++R +R  K+  PV ++S      +K+RGL+ GADDY++KPF+  ELVARI++ +RR
Sbjct: 60  GYEIIREIR-EKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRR 118

Query: 119 SR----GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  H  S +I+   L +N  +  V + G ++ +T +EY+++  L+       +KE 
Sbjct: 119 YERLKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEH 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      +   + V I K+RKK+        +IET+WG GY
Sbjct: 179 ILVSIWGDDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGY 224


>gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  +A  IE  ++ + F   +   G  G +L   ++F  II D+ L  I G 
Sbjct: 1   MDILIIEDDLRVAELIERAVQEQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R  K   P+ +L+ + + ++KV G  +GADDY+ KPF   EL+ARIRA+++R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   A  ++   DL +NL+ K V+  G  I LT KE+ +++         L++     H
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   +     IDV+I  LRKK+      K  I T  G G++LR
Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKIDKGFDHK-LIHTKPGMGFILR 224


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  LA  +E  L  E + V V   G  G+        D ++LD  L  I G E+
Sbjct: 11  ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++    + D+  GL +GADDY+ KPF+ +EL++RIR  +R+ R  
Sbjct: 71  CRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRS 130

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +V  DL ++   + V     ++ LT KEY ++  L       LT++  L H++   
Sbjct: 131 RDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGCD 190

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR K+    G K  I+TV G GYVLR+
Sbjct: 191 FTGDSNIIEVYIRYLRLKI-EGPGEKRLIQTVRGVGYVLRD 230


>gi|94313390|ref|YP_586599.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
 gi|93357242|gb|ABF11330.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
          Length = 206

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 118/207 (57%), Gaps = 7/207 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+     + + +LK    + +V DL  DG++     +   +D I+LD+ L  +
Sbjct: 1   MRILIVEDE---PKAGDYLLKGLTESGFVADLARDGVDGLAHAREQHYDLIVLDVMLPGM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VLR LR  K  TPV  L+    + D+++GL+ GADDY+ KPF   ELVARIR I+R
Sbjct: 58  DGWQVLRELRRDK-DTPVLCLTARDELSDRLKGLELGADDYMVKPFAFAELVARIRTILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        I   DL ++   + V   G +I LT KE+ +++LL+ R+   L++ +  + 
Sbjct: 117 RGPLRESEFIEVADLQIDTIRRRVTRAGQKIDLTSKEFALLQLLARRRGEVLSRSLIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNA 204
           ++D   +    ++DV I +LR K+ + 
Sbjct: 177 VWDMNFDSNTNVVDVSIRRLRAKVDDP 203


>gi|331090774|ref|ZP_08339621.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399882|gb|EGG79541.1| hypothetical protein HMPREF9477_00264 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDKA+   I   L+++ +  +    G  GI      + D ++LDLGL D+ G +V
Sbjct: 6   ILVVDDDKAIRSLITTTLETQEYRYHAVSNGMQGILEVASQKPDVLLLDLGLPDMDGIKV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R +  + P+ ++S  S  +DK++ L  GADDY++KPF+ +E++ARIR ++RR R  
Sbjct: 66  IQKVR-SWSNVPIIVISSRSEDKDKIQALDLGADDYLTKPFSIDEILARIRVVLRRERCM 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++  + G+L +N  A    ++   +HLT  EY+++ LLS      LT       
Sbjct: 125 IYANPEEAEFINGELRINYVAGCAYLKERELHLTPIEYKLLVLLSKNVGKVLTHTYLTRE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 IWGNSWESDVASLRVFMAALRKKIEENPQNPQYIQTHVGIGY 226


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 131/219 (59%), Gaps = 8/219 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +D  I  LR+KL +    ++YI+TV G GY
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGY 211


>gi|295680605|ref|YP_003609179.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295440500|gb|ADG19668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++EDD  +  S+   L+   ++V +V D G  G       E+  ++LDLGL  + G
Sbjct: 1   MRVLIVEDDLQIGQSLLRALQDAEYSVDWVRD-GNAGSAAIAAVEYTLVLLDLGLPGMGG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+A R      P+ IL+    ++ +V+GL  GADDY+ KPF+  EL+ARIRA++RR 
Sbjct: 60  IELLKAAREKGSKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S +    L+++LD +T+   G    L+ +E+ ++     R  T L+++     LY
Sbjct: 120 AGFASSRLGNDTLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +DV I  +RKK      G++ I  V G G+ +
Sbjct: 180 GWGKEVESNAVDVLIHGVRKKF-----GQSVIRNVRGLGWTV 216


>gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 225

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A  +   L+SE F   V   G  G ++     +DAI LD+ L    G+
Sbjct: 1   MRVLIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIILPGKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR + ++TP+ +L+      D+     +GADD++ KPF+   L+AR+RA+VRR  
Sbjct: 61  TVCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DL ++   K V   G  I LT +E+ ++ELL +     L K++ L  ++ 
Sbjct: 121 VAKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +  +++V+I  LR+K+ +A   K  I TV G GY + ++ +
Sbjct: 181 YAILADENVVEVYISYLRRKV-DAPFDKKLIRTVRGVGYCIDKDPE 225


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILD  +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S   AQ   +L   G L++NL+  TV      I LTGKE ++++  +       TK 
Sbjct: 123 VLGSNNTAQEKTTLSFKG-LTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 182 QLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|222112594|ref|YP_002554858.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221732038|gb|ACM34858.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   + +    V     G     L +  +FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLCAQLVQAIAAAGHTVEHASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+  S+  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRRWRAAGRNMPVLILTARSAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  RK   L + +   H+Y 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLPRTLLSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKKL   +     IETV G GY L
Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRL 216


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E ++V+    G + ++  +  + D I+LD+ L    G E
Sbjct: 6   KILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 66  VCREIR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S I  G L+++ DA TV  +G  I LT +E++++  L+      +T+E  L
Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 185 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  L   +   L+ E++     D G D ++  +    D +ILD+ +  + GF V
Sbjct: 6   VLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGFHV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K S PV +L+   +  DKVRGL++GADDY+ KPF+ +EL+AR+ A +RR+   
Sbjct: 66  CERIR-QKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             RG     +V G+L ++ D + V V G  I LT +EY+++  L+       ++E     
Sbjct: 125 KIRGRR---LVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFER 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++       ++ +D  I  LR KL N AG   +IETVWG GY
Sbjct: 182 VWTDTAASSLRTVDTHIKTLRLKL-NGAG--RFIETVWGVGY 220


>gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41]
 gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41]
          Length = 225

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  L  +I  +L+ E  +V   D G D ++      FD +ILD  +  + G 
Sbjct: 1   MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    S  + +L+      D ++GL SGADDY+ KPF  EEL+ARIRA++RR  
Sbjct: 61  EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   +L +N+D++        I LT  E+ ++E L + K   LT+E    +++ 
Sbjct: 121 KVIEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     +D  +  +RKK+ + +  K++I+ V G GY LR+
Sbjct: 181 YDFDVSNNSLDALVKLVRKKI-DTSHEKSHIQNVRGIGYKLRD 222


>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 234

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A+ I   L  + ++V  +  G++G+E  +  E+D IILD+ L +I GF 
Sbjct: 4   KILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEIDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R + 
Sbjct: 64  VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +             L++  D   V +   +I LT KE+ ++ +L+  +N   TK+   
Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++++  +      I V + +LR+KL +      YI+TVWG GY
Sbjct: 183 ENVWNQDNLEGNNTITVHVKELRQKLKDNVKNPKYIQTVWGTGY 226


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +I+ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  VARRLRKTS-SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H + +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 122 HGE-VITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +   G   I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGVIRTVRGIGYALK 220


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|326781352|ref|ZP_08240617.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326661685|gb|EGE46531.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 224

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L+   F V       +   L     +D ++LD  +      
Sbjct: 1   MRVLLVEDDDDLRDVIAAGLRDGGFAVDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R A  S PV  L+ + S+++++RGL+SGADDY++KPF+  ELV R+R + RR+ 
Sbjct: 61  APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   D+ +++    V   G  + L+ KEY +++ L + ++T +T+   L H +D
Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++D  +  LR+KL    G    + TV G+G++L  +
Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220


>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 233

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +  +  IILD+ + D+ GF
Sbjct: 4   VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + ++  D+ ++   +TV VQ   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++    + +   +  FI KLRKK+        YI+TV G GY   + A
Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233


>gi|295102319|emb|CBK99864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 244

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L+IED+  +   I+ +L++  +   V      G+ +   Y  D +ILDLGL D  G 
Sbjct: 6   FKVLIIEDEANICSFIQTLLETNGYQALVAQTCVMGMTMFISYNPDLVILDLGLPDRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +R++R  K  TP+ +LS  ++ +DK+  L  GA+DYI+KPF   EL+AR+RA +R +R
Sbjct: 66  DAIRSIR-QKYLTPIIVLSARTTEQDKIESLDLGANDYITKPFGTGELLARVRAALRVNR 124

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               SL         L++N + + V V G  + LT  EY ++  LS      +T    + 
Sbjct: 125 YGGGSLPGGVFSAQGLTINYERRKVFVDGQEVRLTQTEYNIVAFLSEHAGRVMTYAAIVR 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAK 226
            ++   D    K + V +  +RKKL +  G   YI    G GY ++ E+AK
Sbjct: 185 AIWGDTDASSTKKLQVNMANIRKKLGSRPGSNTYILNELGVGYRMIEEDAK 235


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 133/235 (56%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           M+IL+++DD+A+  ++    +S  FN Y  +L EDG E L K  +   D  ILD+ +  +
Sbjct: 1   MKILVVDDDQAVREALR---RSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V R LR      PV +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+R+++R
Sbjct: 58  DGLDVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLR 117

Query: 118 RSRGHAQSLIVTGDLS---VNLDAKTVEV-QG-HRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS     ++     L    ++LD +T EV +G  RI LT  E+ ++ELL       L++ 
Sbjct: 118 RSALEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRT 177

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++ G D P     ++V+I  LR+K + A G    I TV G GYV+RE A 
Sbjct: 178 AILEDVW-GYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVMRETAP 230


>gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
 gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 127/220 (57%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD ALA S++  L+ +++ + V D     I + +   FD +++D+ L D  G E
Sbjct: 3   KVLIVEDDIALAKSLKAALEVKDYQIEVADCYNLAIRMFQHMTFDILVVDIQLPDGDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  +   P+  L+   + E  V+GL SG DDY++KPF  +EL AR++A++RRS+ 
Sbjct: 63  LCEYIR-KQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQS 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +IV G+L ++L  + V ++   +HL+  ++ ++++L + KN  LT+   L  +   
Sbjct: 122 LQDKMIV-GNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAIDQE 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  E   + V + +LR KL     G +YIETV G GY L
Sbjct: 181 NNFVEDNTLSVHVKRLRDKLG-IYHGHSYIETVRGIGYRL 219


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   + + L+   + V     G   ++    ++ D I+LD+ L D+ GFE
Sbjct: 28  RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV  L+G+  ++D+VRGL  G DD+++KPF  +E+ AR+RA++RRS G
Sbjct: 88  VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +  G + ++ DA  V      + LT  E+ ++  L       L++      
Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ RDE    ++D +I  LR+KL     G++ I TV G GY L
Sbjct: 208 VWNHRDE-GSGVVDTYIYYLRRKLGEP--GQSLIRTVRGVGYQL 248


>gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+A  +   L  E ++V V   G   ++     +FD +ILDLGL  + G EV
Sbjct: 4   VLLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + S  V +L+  +   D V GL +GADDY+SKPF   EL+AR+RA++RR  G 
Sbjct: 64  CRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLRRHGGR 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +++  G + +   A+ V V G  I L  KEY+++ +L       ++++  L  ++   
Sbjct: 124 EDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILREVWGDV 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
           +    K +D+ +  LR+K+ +     +  I TV G G+
Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGPAVERRIATVRGVGF 221


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P   + +DV I +LR+KL+   GG+++ +ETVWG GY
Sbjct: 186 -GYDYPGYSRTVDVHIKRLREKLN---GGEDWQLETVWGVGY 223


>gi|15595953|ref|NP_249447.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100216|ref|ZP_01364134.1| hypothetical protein PaerPA_01001239 [Pseudomonas aeruginosa PACS2]
 gi|116048671|ref|YP_792529.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893301|ref|YP_002442170.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254239118|ref|ZP_04932441.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719]
 gi|254245010|ref|ZP_04938332.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192]
 gi|296390895|ref|ZP_06880370.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313105577|ref|ZP_07791843.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9946643|gb|AAG04145.1|AE004510_9 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115583892|gb|ABJ09907.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171049|gb|EAZ56560.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719]
 gi|126198388|gb|EAZ62451.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192]
 gi|218773529|emb|CAW29341.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310878345|gb|EFQ36939.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL+ED   LA S+   LK   + V   DL +DG+         E+   ILD+GL  +
Sbjct: 1   MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEVL  LR    + PV +L+    ++D+V GL  GADDY++KPF   EL AR++A++R
Sbjct: 58  DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    + L   G L  +L  +   +    + LT +E  ++E +  R    ++KE     
Sbjct: 118 RSVLGGEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +E     I++++ +LRKKL    GG   I T  G GY+L
Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGYLL 218


>gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
 gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVF 248


>gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 254

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVF 248


>gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134]
 gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A+A +I+  L ++   V    LG D +E  +   FD +ILD+GL D+ GFEV
Sbjct: 6   ILVIEDESAIADTIDYALSTDGMAVERCALGGDALERLRTQAFDLVILDVGLPDLSGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R LR      PV  L+      D+V GL+ GADDY+ KPF+  EL AR+R I+RR+ R 
Sbjct: 66  CRTLRTFT-DVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRVILRRTARQ 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                      +V+ D   V   GH + LT  EY+M+ L+        ++   ++ ++  
Sbjct: 125 PVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRAQLMDEVW-- 182

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D P+   + +D  I  +R KL       + I T  G GY
Sbjct: 183 HDAPDTIDRTVDTHIKTVRAKLRALDAASDPIRTHRGMGY 222


>gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 234

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L+S  ++V +   G +G E  K  + D I+ DL + ++ G E
Sbjct: 4   RILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + +A+R    +TP+ +LS   +   K+  L  GADDY++KPF+  EL+ARIR  +RR  +
Sbjct: 64  LTQAVR-RMATTPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQLRRIEA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I  GD  +++DA TV V G  +HLT KE+ ++ L S      LT ++ L  ++
Sbjct: 123 AEPGEVHIEVGDFVIDVDAHTVVVAGESLHLTPKEFDLLLLFSRNPLRVLTHKVLLRGVW 182

Query: 180 D--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              G D+PE   + V I +LRKK+      +  +   W  GY  + +  DE
Sbjct: 183 GPAGEDQPEY--LRVLIAQLRKKIERTDAARYIVSEPWV-GYRFQPSGTDE 230


>gi|296102850|ref|YP_003612996.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057309|gb|ADF62047.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 223

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  +   +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRREFSINNEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 220


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+  + G   ++L +  E D ++LD+ L D+ GF 
Sbjct: 7   RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 67  VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHP 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++   DL ++ D+  V   G  + L+  E++++  L L     L+K   L+H++
Sbjct: 127 TPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-----AGGKNYIETVWGRGYVLRENAK 226
                 +  I++ +I  LR+K+ NA     +  +  I T  G GY+LR+  K
Sbjct: 187 QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLLRQPPK 238


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 19/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++A +++  L+SE F V ++  G   +E+    EF  ++LD+GL D+ GFE
Sbjct: 6   RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K + PV  L+  SS  D+V GL+ G DDY+ KPF+  EL AR+RA++RR++ 
Sbjct: 66  VCRQVRTSK-NVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQ----------GHRIHLTGKEYQMIELLSL 163
            A        Q+ +     +  L A T  V           G  + L+  EY++++ L+ 
Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++   + H  D  D    + +D  +  LR K+         I T  G GY L E
Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAMERTVDAHVKSLRAKMKLIREEVEAIVTHRGMGYSLTE 244


>gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
 gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  L   +   L    F     D G            DAI+LDL ++   G  
Sbjct: 7   RVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGEDGLA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL++GADDY++KPF   ELVAR+ A++RR+RG
Sbjct: 67  ICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRTRG 126

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G L +N   + V   G  + L+ +E+ ++  +   +   L++   +  
Sbjct: 127 MRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSRAQLIER 186

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              GRD E   + +DV I +LR+ L + A     I+TVWG GYVL
Sbjct: 187 AL-GRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVL 230


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +  +   D  E   +L    +   IILDL + +I G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 60

Query: 60  FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +V++  RV K S  P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RR
Sbjct: 61  MDVIK--RVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+G   +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + + 
Sbjct: 119 SQGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 179 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILL+ED+      +   L       YV D  EDG+      +  ++D +ILD+ L   
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAG---YVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+ +L  LR  + STPV  L+    + D+VRGL+ GADDY++KPF+  ELVAR+R+I+R
Sbjct: 58  DGWTLLHNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +      +   DL ++L  +    QG  I LT KE+ ++ LL  ++   L +    + 
Sbjct: 117 RGKPRETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 177 VWDMNFNSDTNVVDSAIRRLRSKVDDAYEPK-LIHTVRGMGYVL 219


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+  LA  +   L  E +   V D G +G++      FD IILD+ L  + GFE
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L  LR   I TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR++ 
Sbjct: 64  ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123

Query: 121 --GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             G A     + +I  G+LS+  +   V + G  + L  KE++++  L  R    +T++ 
Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N ++        + +DV +  LRKKL         IE++ G GY L
Sbjct: 184 LMNIVWGFDYIGGQRTVDVHVSSLRKKLELGQQSVQ-IESIRGVGYKL 230


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 130/230 (56%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   ++  L    F V +   GE+G++     ++D I+LD+ L    GF 
Sbjct: 4   RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR   IST + +LS      D+V GL  GADDY++KPF+  E+V++I+AI+RR   
Sbjct: 64  VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               ++    G  S+ LD    E  V G  I  T KEY+++E L   K   +++++ L+ 
Sbjct: 124 LSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+    + + +I+DV I K+R+KL +  G K  I+T+ G GY+L +   D
Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKD-YGIK--IKTIRGIGYMLEDEVHD 230


>gi|291037430|ref|ZP_06568394.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter xylinus NBRC 3288]
 gi|330990829|ref|ZP_08314784.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
 gi|329761975|gb|EGG78464.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
          Length = 228

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A    +   L+    +V     G DG +      +D +ILD  L  + G  
Sbjct: 8   RLLLVEDDHATTDYVRQGLEESGIDVVCVANGTDGSQHALSQTWDIVILDRMLPGLDGLT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   I TPV  L+ M  +  +V GL+ GADDY+ KPF   ELVAR++ ++RRS  
Sbjct: 68  ILMRMRSYAIMTPVLFLTTMDGVPSRVAGLRHGADDYMIKPFALRELVARVQVLLRRSSS 127

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + I+   D+ +NL    V   G ++ L  +E +++E       T L+++M L  ++ 
Sbjct: 128 FQHTTIMNVADVELNLLTLAVTRNGEKVLLQPQELKLLEYFMRNAGTVLSRQMLLKDVWH 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   I++  IC+LR+KL     G+  I TV G GYV+
Sbjct: 188 MDFPVRTNIVETHICRLREKLGQ--DGQPLIHTVRGSGYVM 226


>gi|229829576|ref|ZP_04455645.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM
           14600]
 gi|229791565|gb|EEP27679.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM
           14600]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 115/205 (56%), Gaps = 1/205 (0%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
           +LK+ ++ V     G D ++  +   +D  ILD+ +  + GF VLR +R A+   PV +L
Sbjct: 30  ILKANHYEVDAVYDGRDALDYLETGVYDGAILDVMMPKMDGFTVLRKIRSAQNDIPVLML 89

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDA 138
           +  S I+D+V+GL SGADDY++KPF+  EL+AR+R+I RR      + +  G L+++   
Sbjct: 90  TARSEIDDRVQGLDSGADDYLTKPFSTRELIARVRSITRRRTVATDASMHLGRLTLDQLT 149

Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198
            T    G  +HL  KEYQ++E+L       ++ + F+  ++    + E  ++ V I  LR
Sbjct: 150 CTANAPGGSLHLANKEYQILEMLLANPGQIISPDQFMEKIWGFESDVEQNVVWVNISNLR 209

Query: 199 KKLSNAAGGKNYIETVWGRGYVLRE 223
           +KL +   G   I+   G GY ++E
Sbjct: 210 RKLKSIDAGI-VIKASRGLGYFVQE 233


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 ---SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S    Q  +L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+         I+TVWG GY
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGY 228


>gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis
           Et1/99]
 gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia
           tasmaniensis Et1/99]
          Length = 222

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F   +  D  ++DLGL D 
Sbjct: 1   MRVLVVEDNPLLRHHLAVQLREMGHQV---DAAEDAKEADYFLNEHTPDITLVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  ++  P+ +L+     + KV  L++GADDY++KPF+ EE+VAR++A++R
Sbjct: 58  DGMTLIRRWRTQEVRQPILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + V +    + LT  EY ++E L       ++K+  +  
Sbjct: 118 RNCGLASQIITLQPFQIDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A   +  I TV G GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAEYAQEVITTVRGLGY 218


>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
           93-146]
 gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Edwardsiella ictaluri 93-146]
          Length = 232

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILD-ASIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q+ +    L++NL+  TV      I LTGKE ++++          TK  
Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGY 228


>gi|241206329|ref|YP_002977425.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860219|gb|ACS57886.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 225

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L+++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVSFGGISFDLNSRTFSAGATPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISANAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++L+EDD ALA  +E    +E + V VT  G++ + +      D IILD  +    G E
Sbjct: 5   KLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  VE +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK L    G  + I TV   GY L
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAL-ELEGASDPIRTVRSAGYAL 226


>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
 gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
          Length = 232

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLD-ASIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSSW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNGDNGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLM 228


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V     GE+G+E  +  + D IILDL L  I G E
Sbjct: 4   KVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVR-AKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I  G L+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 ANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229


>gi|123441540|ref|YP_001005526.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088501|emb|CAL11294.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 227

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F   +   G++GI+      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVPSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 135/230 (58%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I   L+ E ++V + + G++ I + +  + D ++LDL L  + G ++
Sbjct: 9   ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGIQI 68

Query: 63  LRAL-RVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L R+ +    P+ +L+  S   D+V GL+ GADDYI+KPF+  EL+ARIRA++RRS 
Sbjct: 69  CKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRRSE 128

Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               S         IV  DL ++++  TV + G  + LT KE++++++LS  +   L++ 
Sbjct: 129 SKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLSRN 188

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L+ ++      E + +DV I  LR+K+ +    + YIET+ G GY ++
Sbjct: 189 LLLDEIWGYEYFGETRTVDVHIRHLRRKIGDDKSNE-YIETIRGIGYKMK 237


>gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
 gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685]
          Length = 224

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + ++     V   +  ++     +    D  I+DLGL    G 
Sbjct: 1   MRILVVEDNNLLRHHLAVQMRELGHQVDAAENAKEADFFVREQTPDIAIVDLGLPGEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +++ P+ +L+   S ++KV  L++GADDY++KPF+ EE++AR++A++RR+ 
Sbjct: 61  SLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  LY 
Sbjct: 121 GLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL  A   +  I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQQAFPAE-VITTVRGQGY 218


>gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1]
 gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1]
          Length = 240

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 121/239 (50%), Gaps = 23/239 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + STPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRGHAQSLIVT---------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
           R+ G   +   T               G +S+ L  + V V G  + LT KE+ ++ LL+
Sbjct: 120 RTGGSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLA 179

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R      +E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 QRPGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 234


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  +I + L +E +N++    G + + + +  E   I+LD+ +  + G   
Sbjct: 6   ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGIAT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + PV  LS  S   DK+ GL  GADDY++KPFN  EL+AR+++++RR    
Sbjct: 66  ITKVR-EKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTIL 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A +++ TG LS+N D   V V G  + LT  E+++++LL  R N   + E   
Sbjct: 125 GNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V +  +R+K+        Y++ VWG GY
Sbjct: 185 EKVWGELSYMTDNTVAVHVRHIREKIEIDPKNPKYLKVVWGIGY 228


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  + +    ++D I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G ++GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKL 234


>gi|302530063|ref|ZP_07282405.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438958|gb|EFL10774.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 235

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 129/229 (56%), Gaps = 2/229 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  +++  L++E+ +V     G  G++L +   FD ++LD+ L  + G+ 
Sbjct: 7   RVLVVDDEPGVRKALQRGLRAEDMDVVTAADGPTGLQLARTGSFDVVLLDIMLPGLSGYR 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++TPV ++S      D+  GL  GAD Y+ KPF+   LVA++RA++RR+  
Sbjct: 67  VLERLRAENVTTPVLLVSAKDGEIDQADGLDLGADGYLVKPFSFVVLVAQVRAVLRRAGP 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A +  +  G L V+   + V   G  + L+ +E+ ++E+L  R  T +TK+  L  ++ 
Sbjct: 127 DASRGALKLGALEVDRALRQVRWDGQEVPLSPREFGLLEVLVGRAGTVVTKDELLRAVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                   +++V++  +R+KL +A G  + + TV G GY+  ++  DE 
Sbjct: 187 EEQAVTRNLVEVYVGYVRRKL-DAVGAGSILRTVRGHGYLASDDQLDEV 234


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  +++ L+ E F       G    E     +FD ++LD+ L  + G E
Sbjct: 6   RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           + R  RV +IS  P+ +L+   ++ED+V GL  GADDY++KPF   EL+AR+   +RR  
Sbjct: 66  ICR--RVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRD 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + G     +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  
Sbjct: 124 LAEGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 184 VWGFDYTGETNVVDVYIRYLRAKLDDRFHQK-YIYTVRGVGYVVRD 228


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+A  +   L+ E + V     GE+ +   +  E   ++LD+ L  + G EV
Sbjct: 5   ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R +R      PV +L+ +  +E++VRGL++GADDY+ KPF  EEL+ARI A++RRS R 
Sbjct: 65  CRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQ 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L+  G L+++L+A+T       + LT +E+ ++  L       +++      ++  
Sbjct: 125 PTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGH 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +    +++V+I  LR+KL   AG   YI TV G GY
Sbjct: 185 DFDHGTSLLEVYISYLRRKLQE-AGCPGYIATVRGVGY 221


>gi|332162529|ref|YP_004299106.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666759|gb|ADZ43403.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860750|emb|CBX71041.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F   +   G++GI+      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVSSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A++  +   L  E + V  +  G +   L      D ++LDLGL D+ G +
Sbjct: 3   RVLLVEDDPAISEPLARALGREGYEVLASSTGREA--LTNVEGADLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 61  VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRHTA 120

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+S +   D+ V++ A         + LT KE+ ++ +L     + + ++  +  ++ 
Sbjct: 121 EPAESELRAQDIRVDVAAHRAFSGSTELQLTAKEFDLLRVLLREAGSVVERDELMREVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  K +D+ +  LR+KL + A   +YI TV G G+
Sbjct: 181 SDPTGSTKTLDMHVSWLRRKLGDEASDPHYITTVRGMGF 219


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  I+  L+ ++F+V   + G   +E+ K ++ DA ILD+ +  + GF 
Sbjct: 19  RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR A    PV  L+   +++D++ GL  GADDY++KPF  EE++ R+R I+RR + 
Sbjct: 79  VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +SLI   DL+++ D   V   G  + L+  E++++  L +     ++K   L+ +
Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  +++ ++  LR+K+       + I TV G GYVLR
Sbjct: 199 WEYDFGGDGNVVESYVSYLRRKIDTQE--PHLIHTVRGVGYVLR 240


>gi|304406061|ref|ZP_07387719.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345304|gb|EFM11140.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++  +LK +N++V     G+ G++      +D I+LD+ L ++ G 
Sbjct: 1   MRLLIVEDEIHLAEALTQILKKQNYSVDAVHDGQAGLDNALSGIYDLILLDIMLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV +L+    I DK+ GL  GADDY++KPF+ EEL+ARIRA +RR +
Sbjct: 61  TVLKTMRSKGIATPVILLTAKGEISDKISGLDYGADDYVAKPFSTEELLARIRAALRR-K 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +  +  GD+ +N     +   G  + L  KE +++ELL  RKN   +KE  +  L
Sbjct: 120 GEVVPEDALKFGDIELNAANLKLTCGGKELKLILKESELLELLMSRKNAVTSKEQIIEKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVL 221
           +    E E   ++V+I  LRKKL   NAA     I T+ G GYVL
Sbjct: 180 WGFDSEVEHNNVEVYISFLRKKLVFLNAA---VRINTIRGVGYVL 221


>gi|221068464|ref|ZP_03544569.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713487|gb|EED68855.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+  +++  L     NV V   G   +   +  E DA++LDL L  + G 
Sbjct: 5   MQLLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV IL+   ++ D+V GL +GADDY++KPF+ +EL AR+RA++RRS+
Sbjct: 65  QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G L    ++  + +    + LT +E  M+  L  R    +TKE   
Sbjct: 125 DSFTPRSGSEAIALGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++ G  + + + ++V   +LRKKL    G    + T+ G GY+++  A
Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKL---GGTGVQLVTLRGLGYLVKAEA 231


>gi|34557057|ref|NP_906872.1| transcriptional activator protein COPR [Wolinella succinogenes DSM
           1740]
 gi|34482772|emb|CAE09772.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN COPR [Wolinella succinogenes]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/220 (35%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  L+  ++  L+ E + + +     D   L   + +D I+LDL L D  G 
Sbjct: 1   MKILLVEDDLDLSLVLKKALQKELYTIDIAPCLADASHLLTHFRYDLILLDLMLPDGNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + LR      P+ IL+   +I D+V GL SGADDY++KPF+  EL+ARIRA +R   
Sbjct: 61  TFCQKLRARGEGIPLIILTAKDTIMDRVFGLDSGADDYLAKPFSLAELMARIRARLRNPI 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                L +   DL ++   K V   G  I LT KEY+++E L+L ++ TL++E+    L 
Sbjct: 121 TPENPLALKIADLEIDQRTKKVTRGGKLILLTPKEYRLLEFLALNQDATLSEEIIKEALL 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  ++    +I V+I +LR K+      K  I T+ G GY
Sbjct: 181 DFEEQTLSNVISVYIYRLRNKIDKDHSVK-LIHTLRGIGY 219


>gi|94311320|ref|YP_584530.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|254241470|ref|ZP_04934792.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192]
 gi|24461541|gb|AAN62112.1|AF440523_19 putative response-regulator ArmR [Pseudomonas aeruginosa]
 gi|93355172|gb|ABF09261.1| ArmR, DNA-binding response regulator (QseB) [Cupriavidus
           metallidurans CH34]
 gi|126194848|gb|EAZ58911.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I   L      V+     E+         F A++LDLGL D  G 
Sbjct: 1   MRILLVEDDKLIGRGIVAGLHKHGIAVHHVGTAEEAEATHAEDTFHALVLDLGLPDRDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L ++R  +   PV IL+   +IE +++GL  GADDY+ KPF+  EL AR+ A+VRR++
Sbjct: 61  ELLASMRAVEPQLPVLILTARDAIEHRLKGLHEGADDYMIKPFDLRELAARLHALVRRTQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G L +  ++     QG  + L+ +E  ++  L+      +  +M    LY 
Sbjct: 121 GRAAQVISAGPLRLEPESGLAWFQGEPVSLSRREVDLLAHLANADGRWVPPDMLNERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  +R+KL     G   IETV G GY L
Sbjct: 181 LGEEIGSNALNVHIHNIRRKL-----GAEAIETVRGLGYRL 216


>gi|295094108|emb|CBK83199.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   LK+ ++     + G   I     +  D ++LDLGL DI G +V
Sbjct: 6   VLVVEDDRPVRNLIVTTLKAHDYRYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           + ++R +  + P+ ++S  S  +DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G A S +   G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QASGDADSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + VF+  LRKKL +      YI+T  G GY
Sbjct: 185 QIWGSSWEKDIASLRVFMATLRKKLESQKDSPQYIQTHIGVGY 227


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           RIL+ +DD+ +   ++  L+ E F       G+  +E L      D  ILD+ + ++ G 
Sbjct: 26  RILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDGL 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR +R  +   PV ILS      DKV GL+ GADDY+SKPF+ +EL+AR+ A +RR  
Sbjct: 86  ETLRHIR-ERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRREN 144

Query: 121 GHAQSLIVTGDLSVNLDAK--TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H QS  VTG  ++ LD    TVEV G  + L+GKE+Q++  L +    T+++E     +
Sbjct: 145 KHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++  + V I  LR KL   A G+  I TVWG GY L  +
Sbjct: 205 WKDAFGGDLSTVTVHIKNLRDKL--GAEGRR-IRTVWGIGYRLERD 247


>gi|264677348|ref|YP_003277254.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533046|ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262207860|gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718931|gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+  +++  L     +V V   G   +   +  E DA++LDL L  + G 
Sbjct: 5   MQLLLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV IL+   ++ D+V GL +GADDY++KPF+ +EL AR+RA++RRS+
Sbjct: 65  QVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRRSQ 124

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  +I  G L    ++  + +    + LT +E  M+  L  R    +TKE   
Sbjct: 125 DSFTPRSASEVITLGALRYEKESGAIYLDDKVLELTPRELSMMHALLARPGHAVTKERLF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++ G  + + + ++V   +LRKKL    G    + T+ G GY+++  A
Sbjct: 185 SLVFPGEVDVQYEAVEVVAYRLRKKL---GGTGVQLVTLRGLGYLVKAEA 231


>gi|253690600|ref|YP_003019790.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251757178|gb|ACT15254.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 220

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   ++  L    FN+     G+ G    K   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDRLIGDGLKAGLNKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A    PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G +S+   +++V +    + L  +E  ++EL  L  N  LT+      LY 
Sbjct: 121 GQLQPALTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY+L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 129/219 (58%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++ + +    K   + + +   G++G+     Y+ D I+LD+ L DI GFEV
Sbjct: 4   ILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDGFEV 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            + +R  K+S  P+ +++  ++ +D+V GL  GADDYI KPF+ +E++ARIRA++RR+  
Sbjct: 64  CQCIR--KVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTED 121

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  Q+  V G+L +      V + G+ I+LT KE +++ LL+       ++E+ L+ ++ 
Sbjct: 122 NPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E   + +D  + +LR KL         I+T+WG GY
Sbjct: 182 YSGESYDRAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGY 220


>gi|49484305|ref|YP_041529.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82751682|ref|YP_417423.1| two component sensor protein [Staphylococcus aureus RF122]
 gi|257426219|ref|ZP_05602634.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428877|ref|ZP_05605271.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431486|ref|ZP_05607859.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434196|ref|ZP_05610546.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437109|ref|ZP_05613149.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|258422919|ref|ZP_05685819.1| two component sensor protein [Staphylococcus aureus A9635]
 gi|282904747|ref|ZP_06312621.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906425|ref|ZP_06314276.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909393|ref|ZP_06317208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911646|ref|ZP_06319445.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914926|ref|ZP_06322706.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M899]
 gi|282917429|ref|ZP_06325182.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus D139]
 gi|282920257|ref|ZP_06327981.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C427]
 gi|282925468|ref|ZP_06333122.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C101]
 gi|283958859|ref|ZP_06376304.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293508998|ref|ZP_06667785.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510910|ref|ZP_06669609.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus M809]
 gi|293547512|ref|ZP_06672187.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428667|ref|ZP_06821293.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589856|ref|ZP_06948496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49242434|emb|CAG41148.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|82657213|emb|CAI81653.1| two component sensor protein [Staphylococcus aureus RF122]
 gi|257270924|gb|EEV03097.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274219|gb|EEV05736.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277727|gb|EEV08397.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280835|gb|EEV10980.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283502|gb|EEV13629.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257846943|gb|EEV70957.1| two component sensor protein [Staphylococcus aureus A9635]
 gi|282312869|gb|EFB43270.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C101]
 gi|282316117|gb|EFB46498.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus C427]
 gi|282318631|gb|EFB48988.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus D139]
 gi|282321129|gb|EFB51460.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324411|gb|EFB54724.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326663|gb|EFB56961.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282330375|gb|EFB59893.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282594780|gb|EFB99757.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus C160]
 gi|283789577|gb|EFC28400.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919632|gb|EFD96705.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094702|gb|EFE24974.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466195|gb|EFF08722.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus subsp. aureus M809]
 gi|295127337|gb|EFG56977.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576984|gb|EFH95698.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus MN8]
 gi|302333726|gb|ADL23919.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312437506|gb|ADQ76577.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193239|gb|EFU23637.1| two component sensor protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 231

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ H +++ L  + +NV   +         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++ IV   G LS++  +K+V +    +HLT  E+ ++ELLS  K   LT EM L  +Y
Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|307704977|ref|ZP_07641865.1| response regulator, transcriptional regulatory protein
           [Streptococcus mitis SK597]
 gi|307621487|gb|EFO00536.1| response regulator, transcriptional regulatory protein
           [Streptococcus mitis SK597]
          Length = 178

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/176 (35%), Positives = 107/176 (60%), Gaps = 1/176 (0%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           I+LDL L +  GF+VL+ LR   I+TPV I++   S++DK  G + GADDY++KPF  EE
Sbjct: 2   ILLDLMLPEKNGFQVLKELREKGITTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEE 61

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L  RI+A+++RS    ++ +  GD+ +NL   TV+V+   + L GKE+ ++      +N 
Sbjct: 62  LKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTTVELLGKEFDLLVYFLQNQNV 121

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L K    + L+    +  + +++V++ K+RKKL      +N ++T+   GY+L++
Sbjct: 122 ILPKTQIFDRLWGFDSDTTISVVEVYVSKVRKKLKGTTFAEN-LQTLRSVGYILKD 176


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+   ++V V   G+   +L K   FDAI+LDL L  I G  
Sbjct: 3   KILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR  K+STPV +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 63  LLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQV 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q      +I   ++ ++ + K V      + LT +EY+++   + R    + +E  L 
Sbjct: 123 DHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E +++D+ I  LR+K+         ++TV G GY L
Sbjct: 183 AVWGYEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTL 227


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  +A      L+   F V V   GE G+ +     +D +ILDL +  + GFEV
Sbjct: 5   VLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R  K   P+ I++ +    D +RGL  GADDYI+KPF   ELVAR++A + R    
Sbjct: 65  CKKIR-EKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLARYERL 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   ++++   DL ++ D + V V      LT KE+ ++  L+   N   +KE     
Sbjct: 124 VGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKEHLFER 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ + V I K+R+K+   +    YIETVWG GY  R
Sbjct: 184 IWGVDALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYRCR 228


>gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 223

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   + +    V     G     L +  +FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+  ++  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  RK   L++     H+Y 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKKL   +     IETV G GY L E
Sbjct: 181 HDSDRDSNTIEVFVGRLRKKLPPGS-----IETVRGLGYRLAE 218


>gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074]
 gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 16/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R A+ S PV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-ARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R++          A   +V G + V L  + V V G  + LT KE+ ++ LL  R     
Sbjct: 120 RNQPGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 RREQIISEVWRTSWEGTGRTLEVHVASLRSKLRRPA----LIETVRGVGYRL 227


>gi|227112103|ref|ZP_03825759.1| DNA-binding transcriptional regulator BasR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    + D+V GL  GADDY++KPF   EL AR+RA++RR +
Sbjct: 61  TLLSRWRKNHYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    + LT KE+ ++  L L+  + + +E+    +Y 
Sbjct: 121 GSSNSTIQVDNITLDLNNQQVLLDNKPVVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRHKI-----GKDRIRTLRGFGYLL 216


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + +L+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    +    I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  D   +P  KI+DV I +LR K+   +    YIETVWG GY
Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223


>gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis C231]
 gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein
           [Corynebacterium pseudotuberculosis I19]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 16/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   I   L+ E + V      + G +L   Y  D +ILD+ L D  G+ 
Sbjct: 5   RVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGYA 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   +R +    +TPV +L+ +   +++V GL++GADDY++KPF+ +ELV R +A+VRRS
Sbjct: 65  LCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRRS 124

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G  Q     IV G +SVN     V + G ++  T  E ++++ L    N  ++ +  LN
Sbjct: 125 GGIVQQESQEIVVGKVSVNPITHAVAIDGRKVDTTATEGKLLQALVSHPNEVVSVKRLLN 184

Query: 177 HLYD------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D      GR+     ++     +LRKKL NA    + I +V G+GY+ 
Sbjct: 185 QVWDTTATQGGRN-----MVKSTTYRLRKKLENAGLPADSILSVRGQGYIF 230


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +  +   D  E   +L    +   IILDL + +I G
Sbjct: 9   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 68

Query: 60  FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +V++  RV K S  P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RR
Sbjct: 69  MDVIK--RVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 126

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+G   +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + + 
Sbjct: 127 SQGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 187 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 232


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V V D G+ G EL     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + PV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  SICQELRSQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRSA 120

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++     +   DL ++ D +    QG  ++L+ KE +++       +  LT +    
Sbjct: 121 ASVETNGINRLKVADLELDSDNQVAYRQGRMVNLSDKEVKLLAYFMEHPHQLLTHDQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L++  ++P   ++   I  LR+K+         I TV+G+GY
Sbjct: 181 SLWEEPEKPSSNVLAALIRLLRRKIEEEGP---LIHTVYGKGY 220


>gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLHRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGN-----GIVETVRGLGYRL 216


>gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 243

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  + + I   L S +++  +   GE+G++  K    D +ILDL L DI G EV
Sbjct: 6   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    +TP+ I++  +   D++ GL+ GADDYI+KPF+  EL  R+    RR    
Sbjct: 66  CRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A   I+ G L ++   + V ++ + ++++ KE+ +++L++       ++EM 
Sbjct: 126 AGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSREMI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++    +   ++ID  + ++R KL   +    +IET+WG GY   +N
Sbjct: 186 LEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235


>gi|266624011|ref|ZP_06116946.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
 gi|288864175|gb|EFC96473.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L+++++       GE  I     +  D ++LD+GL DI G ++
Sbjct: 6   ILVVEDDAAVRNLITTTLETQDYRFLTASTGEAAILEAVSHNPDIVLLDMGLPDIDGVDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           ++ +R   +  P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+RA  RR   +
Sbjct: 66  IKKIRTWSL-MPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRATQRRLIAT 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +G     Q+    G L ++  A  V ++   +HLT  EY+++ LL+      LT      
Sbjct: 125 QGVMPAQQTFFENGRLRIDYAAGCVFLEDTELHLTPIEYKLLCLLAKNIGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + +V  + VF+  LRKK+ N      YI+T  G GY
Sbjct: 185 EIWGSSWDNDVASLRVFMATLRKKIENTQDAPQYIQTHIGVGY 227


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++      D I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTKEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A+   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 AEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS---------NAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LRKK+          N       I+T  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMIR 239


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 131/227 (57%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           +IL+IEDD+ +   ++L L+ +++ +   + G   + +L K  + D +ILDL L DI G 
Sbjct: 3   KILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVK--QPDLVILDLMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +++R  K   P+ +++  ++ +DK+ GL  GADDYI+KPFN  E+VAR++A +RR +
Sbjct: 61  SICKSIR-KKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +++     I    L++N  +K V +    I LT  E++++E L  RK   L+ E   
Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELF 179

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++ D         I V +  LR+K+ ++     YI+TVWG GY++
Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYII 226


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+ QG  +HL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L+    G + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGDVDG-DPIRTVRSAGYSLDLDA 229


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   +E+ +K  N  V   + G   +E  +  +FD I+LDL +  + G E
Sbjct: 9   QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +++  +   DKV GL+ GADDYI+KPF+  EL AR +A++RRS  
Sbjct: 69  VCRELRKTK-NTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         +  GDL VN++ + V ++G +I L+ KE+ ++ LL+     + ++   
Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++          ++  I +LR K+    G   YI T WG GY   E+
Sbjct: 188 LDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237


>gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  IE  L++  F   V   GE   +      FD ++LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR A+++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R  +R
Sbjct: 63  VLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G+++++L  +        + LT +E+ ++EL        L++E  L+ ++ 
Sbjct: 123 APEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   I+DV++  LR+KL     G + IETV G GY L + 
Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAHRIETVRGMGYRLPQG 221


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 137/233 (58%), Gaps = 15/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   +++ L+ E++ +   D G+D +++   Y++D I+LD+ +    G 
Sbjct: 5   IKVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R+AK +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCKEIRMAK-ATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAS 123

Query: 121 GHAQ---SLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           G  Q   +L+  GD      L+++ ++  V + G +++LT KEY ++  ++       ++
Sbjct: 124 GGEQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKL---SNAAGGKNYIETVWGRGYVL 221
           E  L  ++      +++ ID  + +LR+KL   S  AG    I TVWG GY L
Sbjct: 184 EALLKEIWRYDFVGDLRTIDTHVKRLREKLYDISEEAG--KMIVTVWGLGYKL 234


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E   + E ++V  T  G++ + L      D ++LD  +    G E
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+  S  +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDLS++  A  V  +   I +   E++++           ++   L+ +
Sbjct: 125 RPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LR+ ++   G  + + TV   GY L
Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAIA-IPGAPDPVRTVRSAGYAL 226


>gi|319956010|ref|YP_004167273.1| two component transcriptional regulator, winged helix family
           [Nitratifractor salsuginis DSM 16511]
 gi|319418414|gb|ADV45524.1| two component transcriptional regulator, winged helix family
           [Nitratifractor salsuginis DSM 16511]
          Length = 231

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  LA  +   L      V   +    G+      +FD +ILDL L  + G 
Sbjct: 6   MKILIIEDDPELAMVLSSYLSKHGMEVTAVEDPYIGLSTLTQKDFDLVILDLTLPGMDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  +R      P+ I S    I DKV G++ GADDY+ KP++  ELV RI+ I+RR+ 
Sbjct: 66  EVVEKIR-EHSDIPIIISSARDDITDKVIGMERGADDYMPKPYDPRELVTRIKTILRRTG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +      +L  + + + +  +G  + LT  E+ ++ +L    N  +++E  L     
Sbjct: 125 GQKKKEEALFEL--DKEGRVIRFKGVPLELTAAEFDVLSMLIQHMNAAVSREQLLYESEH 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DE  VK IDV I ++RKK++       YI  V G GY+L +   DE
Sbjct: 183 IDDESSVKNIDVIISRIRKKIAKIDPNHTYIRPVRGVGYLLTDKPTDE 230


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  +L     +  I+LDL L ++ G +V
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMDGIQV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR    
Sbjct: 68  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +E       D I+LD+ +  + GFE
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +TPV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 66  VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSRS 125

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++    L++N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 126 VQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ +N    +  I T  G GY++R
Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMIR 230


>gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 236

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           R+L+IEDD  +  ++ L L++  + V     GE G E       +D IILD  L    GF
Sbjct: 5   RLLIIEDDAEVREALALCLETAGYEVDAVATGEAGREKAITVPGYDLIILDARLPGRDGF 64

Query: 61  EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EVLR LR    + TPV +L+G++  E +++G + GADDY++KPF  EEL+AR+ A++RR+
Sbjct: 65  EVLRELREEDGVMTPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRA 124

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +   Q        G + V+L   TV   G  + LT  E++++  L L    T+T+E  L 
Sbjct: 125 KRRPQPEKRRFRVGGIEVDLVDGTVTRDGQPVPLTDMEFRLLRYLILHHGRTVTREQLLR 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + + ID  I  LRK +         I++V+G GY L
Sbjct: 185 EVWELPPTVQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRL 229


>gi|228955353|ref|ZP_04117360.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229072574|ref|ZP_04205776.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229082333|ref|ZP_04214796.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229181381|ref|ZP_04308710.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228602117|gb|EEK59609.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228700765|gb|EEL53288.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228710550|gb|EEL62523.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228804329|gb|EEM50941.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 220

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+++++ A  I   L  E   +        G+ +    ++D IILD     I G E+ R
Sbjct: 1   MIKNERSSAKKIVSGLTQEGHFILKLHNENQGLNIAYEQDWDIIILDWDSLSISGPEICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R+ K +TP+ I++   S ED + GLQ+GADDYI KPF KEELVAR++AI+RRS  + Q
Sbjct: 61  QIRLVK-TTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYNQQ 119

Query: 125 ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++  
Sbjct: 120 NETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 180 DVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 220


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  L   +   L ++ F V     G+DG+ L +    D ++LD+ L DI G +
Sbjct: 4   RVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LRV+    PV +L+      D++ G + GADDYISKP N  ELVAR+ A++RR   
Sbjct: 64  VLRQLRVSA-HLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         GDL +  D + V   G  + LT  EY+++++L     + + K   +  
Sbjct: 123 DQKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQW 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               R E   + +D+ I  LRKKL N    +  IETV G GY  R
Sbjct: 183 ALGRRLETYDRTLDMHISNLRKKLGNEEPPR--IETVRGLGYSYR 225


>gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 241

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  + + I   L S +++  +   GE+G++  K    D +ILDL L DI G EV
Sbjct: 4   ILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    +TP+ I++  +   D++ GL+ GADDYI+KPF+  EL  R+    RR    
Sbjct: 64  CRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWDKK 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A   I+ G L ++   + V ++ + ++++ KE+ +++L++       ++EM 
Sbjct: 124 AGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSREMI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++    +   ++ID  + ++R KL   +    +IET+WG GY   +N
Sbjct: 184 LEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ E + +   + GE  ++     ++D I+LDL L  + G +
Sbjct: 9   RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TPV +L+      ++V G ++G DDY+ KPF+  ELV R++A++RRS  
Sbjct: 69  VCRELRNKK-ATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         ++IV  +L+++ DA  V   G  + LT KEY+++  L+   +   T+E 
Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKD 227
            L  +++     +++ +D  I +LR+KL+ A+      I TVWG GY L E  KD
Sbjct: 188 LLRDVWNYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKL-EVPKD 241


>gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
          Length = 234

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/204 (34%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+K L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V     GE+ ++  +  + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            + S           ++ GDL +  D      + +++ LT KE++++  L   K   LT+
Sbjct: 124 ASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|329938569|ref|ZP_08287994.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302542|gb|EGG46433.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 243

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  +   L+ E + V         +   + +  DA++LD+ L D  G 
Sbjct: 16  VRVLVVDDEPDLAEVVTGALRYEGWEVRSAASASAALCEARAFRPDAVVLDIMLPDRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VLR LR  +    V  L+   ++ED++ G+ +G DDY++KPF+  ELVAR+R ++RR+ 
Sbjct: 76  SVLRDLRSGQPHVCVLFLTARDTVEDRITGITAGGDDYVTKPFSLGELVARLRGLLRRAG 135

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A SL+V GDL ++ DA  V   G  + L+  E+Q++  L       L+K   L+
Sbjct: 136 MTRERAADSLLVVGDLELDEDAHEVTRGGDPVDLSPTEFQLLRCLMRHPRQVLSKTQLLD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LRKK+ +  G    I TV G GYVLR
Sbjct: 196 LVWSYDFGGQAHVVELYISYLRKKIDS--GRDPMIHTVRGAGYVLR 239


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +I++++DD  +   +   L  E F V V    EDG  L +       D I+LDL +    
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIV---AEDGKALNRILLRDTVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR
Sbjct: 67  GLSVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +       +  G  + +L ++T++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV I +LRK + + A    YI+TVWG GYV 
Sbjct: 187 REK-LAQLARGREFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVF 237


>gi|315651729|ref|ZP_07904734.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485984|gb|EFU76361.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 223

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 122/202 (60%), Gaps = 2/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L+ +   +L  + + V     G+  +E      +D +I D+ +  + GF
Sbjct: 1   MKILLAEDEVGLSKAYAQVLIMQGYEVEQVYDGKAALEAANSSTYDLMIFDVMMPKMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVL+ALR A  +T V +L+ MS ++DK+ GL+ GAD+Y++KP   +ELVARIR++ RR  
Sbjct: 61  EVLKALREAGNTTYVIMLTAMSELDDKIEGLELGADEYLTKPIPLKELVARIRSLERRID 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + ++++  G + +N+  + +  + + I L GKE +++E+L L KN  L+ E   NH++
Sbjct: 121 TNYNENVLTFGSVRLNVSQQELSAK-NSIILAGKETKLMEVLMLNKNKKLSTEYIYNHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKL 201
              D+ +   + ++I  L++KL
Sbjct: 180 SKDDDSDAGYVWIYISYLKQKL 201


>gi|218533540|ref|YP_002424355.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218525843|gb|ACK86427.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD   A  +   L      V     G +G    +   +DAIILD  L  + G  
Sbjct: 3   RLLLIEDDAETAREVHGDLCGRGHVVGWASTGPEGAACARDEAWDAIILDRMLPGLDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR A   TP  +LS +  +++++RGL++G DDY++KPF   EL ARI A++RR   
Sbjct: 63  VLQDLRRAGNRTPALVLSTLGDVDERIRGLRAGGDDYLAKPFVLAELAARIEALLRRPVD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G L ++L   T       + L  +E +++E L  R    +T+ +    +++ 
Sbjct: 123 TRETILRVGSLEIDLIGGTGRRGARDLDLLPRELKLLEYLMRRPGQVVTRTLLFEEVWNY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R  P+  +IDV + +LR+KL  A G  + I  V G G+ L
Sbjct: 183 RFTPKSNLIDVHLGRLRRKL-EAEGEPSLIHNVRGIGFTL 221


>gi|28871373|ref|NP_793992.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971133|ref|ZP_03399252.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato T1]
 gi|301381851|ref|ZP_07230269.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059020|ref|ZP_07250561.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato K40]
 gi|302132819|ref|ZP_07258809.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854624|gb|AAO57687.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924122|gb|EEB57698.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tomato T1]
 gi|330877449|gb|EGH11598.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331015588|gb|EGH95644.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 223

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL   + G   I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLDGHSVG---IVTFRGLGYLL 218


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ ED+K ++  I+  L+ E + +     GED ++     E + IILD+ L  + GFE
Sbjct: 4   RVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K S P+ +++      DK+ GL+ GADDYI+KPF+  ELVAR++A VRR   
Sbjct: 64  ICKRVR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEM 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   DLS++L    V+     I LT +E+++++ L+ +K+   ++E  L
Sbjct: 123 NINADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +++ +DV + +LR+K+ + +    YI T  G GY  +
Sbjct: 183 ERVWGYEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYFK 229


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   ++    ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G++ I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224


>gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
 gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
          Length = 234

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL +EDD A+ + I   L+++++  +    G   I      + D ++LDLGL D+ G EV
Sbjct: 6   ILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQKPDIMLLDLGLPDMDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R I+RR +  
Sbjct: 66  IKKIR-SWSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILRRLQYM 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +   V GDL ++  +  V ++G  +H+T  EY+++ LLS      LT      
Sbjct: 125 ESSSSQEEKEFVNGDLRIDYVSGCVYLKGQELHMTSTEYKLLILLSKNVGKVLTHTYITK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 EIWGSAWDNDVASLRVFMATLRKKIEENPSQPKYIQTHVGIGY 227


>gi|75677094|ref|YP_319515.1| two component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74421964|gb|ABA06163.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++ED + LA  +   L++  + +  +T+L  D         + A+ILDLGL D  G
Sbjct: 1   MRVLIVEDSEELADLLAKGLRAAGYQIDLLTNLA-DAASALGTTRYAALILDLGLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +LR LR  K   P+ +L+    +ED+V GL+SGADDY+ KPF+ +ELVAR+ A++RR 
Sbjct: 60  LSILRELRHRKDPLPILVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   +++ + + +   V     +LT +E  ++ELL  RK   ++K++  + ++
Sbjct: 120 GQLLGSSLRLANVTFDSEGRQAFVDMKPQNLTAREIAVLELLLRRKGNVVSKKLLEDQIF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     ++V++ +LRK+L +  G K  I T+ G GYV+ E+
Sbjct: 180 GLTGDVASNAVEVYVHRLRKQLLD-IGAKVKISTIRGVGYVMMES 223


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A I R  R
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    +  T KE+ ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 181 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 225


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  L   +   L +E   V     G DG        +D +ILD+ L  + GF+
Sbjct: 3   KILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQA-VEHYDLVILDVMLPGMNGFD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R +    PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI RR+  
Sbjct: 62  VLRQVRQSS-EVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    + +  GDLS++   + V      I LT  E+ ++ +L       +++E  ++ + 
Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                P  + IDV I  +RKKL     G+  I+T+ G GY
Sbjct: 181 GRHLSPYDRSIDVHISSVRKKLGQTPSGRERIKTIRGVGY 220


>gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M I +IED+  + + ++  L+ E +NV +   GEDG+ +      D ++LD  L  + G 
Sbjct: 1   MHIAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R A  STP+  L+   +I + + GLQ+GA+DYI KPF+  EL+ARI    R   
Sbjct: 61  DVCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L + G++ +N     V   G  I LT +E++++E L   K    ++++ +  +++
Sbjct: 121 VLKNQLKL-GNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDVFI  +RKKLS     + YI+T+ G GY+  EN
Sbjct: 180 IDFDYDTGVIDVFINAIRKKLS-MDKDEGYIKTIRGVGYIAIEN 222


>gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +E  L+S  F   V     + ++L     FD +ILDLGL    G +
Sbjct: 3   RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    S P+ IL+    I DK+   + GADDY++KPF  EEL+ R++A +R + G
Sbjct: 63  VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++   ++ ++L  + V+V    + L+ +E+ + E         L++E  L+ 
Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   I+DV++  LRKKL N       IETV G GY L+
Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN-----ELIETVRGMGYRLK 222


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   Y    G +  ++    + D ++LD+ +    GF V
Sbjct: 5   VLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R A  + P+  L+   + EDKV+GL  G DDYI KPF  +EL ARI A++RRS  +
Sbjct: 65  CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V G + ++  A+ V V G  I LT KE++++ L         T+E  L  +
Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D       + +D  I  LR KL   A    +I+TVWG GY
Sbjct: 184 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGY 222


>gi|329904416|ref|ZP_08273802.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547984|gb|EGF32724.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 218

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 114/201 (56%), Gaps = 5/201 (2%)

Query: 26  NVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           N YV DL  DG   + L    ++D I+LD+ L  I G+EVL+ LR  K +T V  L+   
Sbjct: 18  NGYVVDLARDGTTGLHLAVQEDYDLIVLDVMLPGIDGWEVLKKLRETK-ATAVLFLTSRD 76

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVE 142
            + D+V+GL+ GADDY+ KPF   EL+ARIR ++RR+       +   DL +++  + V 
Sbjct: 77  DVNDRVKGLELGADDYLIKPFAFVELLARIRTVLRRNPQREADTMNVADLEIDVLKRRVI 136

Query: 143 VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202
             G RI LT KE+ ++ LL  R+   L++ +  + ++D   + +  ++DV I +LR K+ 
Sbjct: 137 RDGQRIDLTAKEFALLHLLVRRQGEVLSRSLIASQVWDMNFDSDTNVVDVAIRRLRAKVD 196

Query: 203 NAAGGKNYIETVWGRGYVLRE 223
           +    K  + T+ G GY+  E
Sbjct: 197 DPFPNK-LVHTIRGMGYLFEE 216


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I++ LKS  FN  +   G++   L   Y  D ++LD+ +  + G +
Sbjct: 7   KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  +   PV +++      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIR-KQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DL ++  +  V   G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV + +LR+KLS   GG+ + IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHVKRLREKLS---GGEQWQIETVWGVGY 223


>gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
 gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H I   L  E +NV     G+  ++  +   +D +I+D+ +    G 
Sbjct: 1   MRILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMIPKKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I  PV  L+  S  +D VRGL +GA DY++KPF   EL+AR+R ++R   
Sbjct: 61  SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++ +   V   G  + LT +EY ++E L   KN  +T+E    +++ 
Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+    ++DV+I  LR+K+ +    K  I T+ G GY L
Sbjct: 181 IDDDINSNVVDVYIRYLRRKIDDPFEEK-LIHTIRGVGYRL 220


>gi|152989694|ref|YP_001350106.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150964852|gb|ABR86877.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MRILL+ED   LA S+   LK   + V   DL +DG+         E+   ILD+GL  +
Sbjct: 1   MRILLVEDHPQLAESVVQALKGAGWTV---DLLQDGVAADLALASEEYALAILDVGLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEVL  LR    + PV +L+    ++D+V GL  GADDY++KPF   EL AR++A++R
Sbjct: 58  DGFEVLARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    + +   G L+ +L  +   +    + LT +E  ++E +  R    ++KE     
Sbjct: 118 RSMLGGEQVQRCGALAYDLGTRRFSLDEQPLILTSREQAVLEAMIARPGRVMSKEQLAAQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +E     I++++ +LRKKL    GG   I T  G GY+L
Sbjct: 178 VFGLDEEASADAIEIYVHRLRKKLE---GGAVRIVTFRGLGYLL 218


>gi|241767666|ref|ZP_04765303.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241361391|gb|EER57893.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 239

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD  LA ++   L +  F         D   L     + A++LD  L D  G 
Sbjct: 20  LRILLIEDDAPLAEALMAFLNARGFVCECAASLADARALLPAAHWAAVLLDWQLPDGEGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR     + V +L+    I D++RGL +GADDY+ KP++ +EL+AR+RA+ RR  
Sbjct: 80  ALLPLLRRTLPDSAVIMLTARDQITDRIRGLDAGADDYLVKPYDPDELLARLRAVERRRS 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +    LS++L    V + G  + +T KE+ ++ +++LR +   T+E   + LY 
Sbjct: 140 GVGSATLQLQGLSIDLARMVVTLDGQPVEITAKEWALLRVMALRPDRIHTRESLQDALYG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    ++VFI  LR+K+     G++ I+T+ G GY L  +A
Sbjct: 200 LDANASSNTLEVFISNLRRKI-----GRDRIQTLRGLGYKLNTSA 239


>gi|222111377|ref|YP_002553641.1| winged helix family two component heavy metal response
           transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730821|gb|ACM33641.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax ebreus TPSY]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    ++  +   G DG+ +    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGAYLRQGLSEAGYSCDLVPNGGDGLHMAIHGQYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+R  R
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILR--R 118

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GHA S   T    DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + 
Sbjct: 119 GHAGSEGTTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+      K  I+TV G GYVL
Sbjct: 179 VWDMNFDSDTNVIEVAMRRLRVKIDEGHPVK-LIQTVRGMGYVL 221


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+      D V+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 KEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E K++DV + +LR+K+        +I TVWG+GYV +E+ +
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKESIR 232


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +   +  + D  +LD+ L DI GF 
Sbjct: 9   KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+  L+     +DKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +    L ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+ N     + I T  G GY+LR   K
Sbjct: 189 EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLLRSADK 235


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 122/220 (55%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL +D+  +   +E+ L++E F V     G   ++  +    D  +LD  +  + G ++
Sbjct: 8   VLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +  PV +++    ++D+V  L++GADD+I+KPFN  E++AR +A++RRS+G 
Sbjct: 68  CRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGF 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +  ++  GDL +N   +T  + G  + LT +E+ ++E         L++   + H++   
Sbjct: 128 SSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWGDD 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  ++DV++  LRKKL  A G +  I+TV G  + LR
Sbjct: 188 YFGDENVVDVYVRYLRKKL-EATGSQRVIQTVRGVVFALR 226


>gi|159185897|ref|NP_356842.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159141031|gb|AAK89627.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI----ILDLGLTD 56
           MR+LL+ED++ +A ++   L    F++ V  +G   ++L +    D++    +LD  L D
Sbjct: 1   MRLLLVEDEREMAAALSAAL--HRFDIIVDTVGT--LDLARHAIMDSVHDLVVLDRQLPD 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +++  LR+  ++ PV +L+    + D++ GL  GADDY++KPF  EEL+ARIRA++
Sbjct: 57  GDGIQLIEDLRLLPVTPPVIVLTAQGGLADRINGLNLGADDYLAKPFAVEELLARIRALM 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR  G  +     G L    + + V ++G  + LT +E  ++E L  R+  T+ + M   
Sbjct: 117 RRPAGTVKMTARLGALEFCFETREVRIKGEFLPLTRRELLILEALLRRQGRTVLRSMLEE 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +Y+  DE +   +D  I +LR+KL+ A  G   +  + G GY++R
Sbjct: 177 AVYNFDDEIQSNALDSHISRLRRKLAAADAGVE-VHGIRGVGYLMR 221


>gi|54301942|ref|YP_131935.1| DNA-binding response regulator [Photobacterium profundum SS9]
 gi|46915362|emb|CAG22135.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum SS9]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      I   L+   F V     G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKILVIEDDLTTREFIAKGLREHGFVVDEAGDGHQGLMMATSCEYQLIILDRMLPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR + +V+R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRH- 119

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H+ + +VT     DL +++ +  V      ++L  KE+ +++ L       +++     
Sbjct: 120 -HSSTKVVTEYIYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLMEHAENVVSRMSLFE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    +P+  +IDV I  LRKKL    G    I T+ G GYVLR +
Sbjct: 179 SVWSYHFDPKTNVIDVHIANLRKKLEE-NGELGLIHTIRGAGYVLRRS 225


>gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L+IED+ ++   +   L+++ + V    L +D  +   F+  D ++LD+ L D  GF
Sbjct: 3   FKVLVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +      + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSREILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+T +G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227


>gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 259

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 33  RVLVVDDEQPLAQMVASYLIRAGFDTRQAYTGTQAVDEARRFSPDVVVLDLGLPELDGLE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   +R       + +L+   + +DK+ GL  GADDYI+KPF   ELV R+ A++RR R 
Sbjct: 93  VCGRIRTFS-DCYILMLTARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPRT 151

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  G+L+++  A  V+V    + LT  E++++  L+LR    LT+   + 
Sbjct: 152 STIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLVT 211

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL     G+ +IETV G GY
Sbjct: 212 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGY 254


>gi|77361690|ref|YP_341265.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876601|emb|CAI87823.1| putative response regulator in two-component regulatory system with
           CusS, regulation of copper resistance [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED +AL  S+++ L +  F V  T  G +G+ +     +D I+LDL L  + G 
Sbjct: 1   MNILVIEDSEALRRSLQVGLGNLGFTVDETGDGSEGLSMALSGNYDLILLDLMLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ALR +   + V ILS  S  +DK+ GL  GADDY++KPF+ EEL AR+ A++RR S
Sbjct: 61  SILQALRSSNNQSRVLILSARSEPQDKINGLMKGADDYLTKPFSFEELHARVLALLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + Q+ +  GD  ++L  KT+  Q H I LT  EY++IE L       L  E+    + 
Sbjct: 121 LQNQQNTLTVGDCVLDLSLKTLHYQQHAIELTRNEYKIIECLFNAPERVLGLELISEAVV 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              D      ++  I  +RKK+     G+  I+   G GYV
Sbjct: 181 GQFDMLSKNALEAHISTIRKKVRQ-FDGELPIKNKRGFGYV 220


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++VY    GE+ ++  +    D I+LDL L  + G E
Sbjct: 4   KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VARQVRKSH-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +QS          I  GDL+++ +A  V  +G +I LT +E++++  L+      +T+E
Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232


>gi|317404886|gb|EFV85256.1| winged helix family Two component Transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 221

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD ++A +I+  L  + F V  V  L +  + +   +   A +LDL L D  G
Sbjct: 1   MRILLVEDDASIASAIQAGLGLQGFVVDAVGSLRQADLAVGTSHA-SACVLDLCLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L   R  +   PV +L+  SSI  +V  L++GADDY+ KPF+ +EL AR++A++RR+
Sbjct: 60  VTLLAKWRARRQDLPVLVLTARSSIAQRVAALRAGADDYVLKPFDLDELAARLQALIRRA 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            GH+   I  G L++ L    V + G R+ L  +E  +++ L       LT +   + LY
Sbjct: 120 AGHSADRIDHGRLTLYLSRGEVLLDGARVTLQRRELALLKTLLQHPGQILTMDQLRDSLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D  E   ++V I KLR+KL     G   IETV G GY L
Sbjct: 180 GFDDRVESNAVNVHIHKLRRKL-----GAGLIETVRGWGYRL 216


>gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+  LA ++  +L+   +       G  G++      +D IILD+ L  + G 
Sbjct: 1   MNLLVIEDEVRLAEALVQILQKNKYAALAAYDGITGLDHALTGIYDVIILDIMLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  KI TPV +L+    + D+V+GL  GADDY++KPF  +EL+ARIRA+ RR R
Sbjct: 61  EVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRR-R 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +   D+S+NL    +      + L  KE++++E L       ++KE  L  +
Sbjct: 120 GELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E E   ++V+I  LRKKLS+    K  I+TV G GY L
Sbjct: 180 WGFDSEAEYNHVEVYISFLRKKLSHIH-SKVGIQTVRGVGYRL 221


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ +LA  ++  L+ E + V     GE+ +   +    D I+LD  L  + G E
Sbjct: 5   RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    S   P+ +L+      D++RGL +GADDY+ KPF   EL ARIRA++RR 
Sbjct: 65  VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRL 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R G A+  +  GD+ ++  A  V+  G  +HL   E+++++          ++E  L+ +
Sbjct: 125 RPGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L NAA   + I TV   GY L  +A
Sbjct: 185 WGSDVYVEARTVDVHIGRLRKAL-NAADAGDPIRTVRSAGYSLDVDA 230


>gi|139438103|ref|ZP_01771656.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC
           25986]
 gi|133776300|gb|EBA40120.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC
           25986]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++AL  +I   L++  ++V     G + ++L     FD ++LDL L  + G 
Sbjct: 7   MRILIVEDERALCATIARSLRNLAYSVDCCHDGREALDLLGVEVFDLVVLDLNLPHVDGM 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR     T V ILS    + DKV GL +GA+DY++KPF+ +EL ARIR++  R  
Sbjct: 67  TVLGELRKTDCETKVLILSARGEVSDKVAGLDAGANDYLTKPFHLDELAARIRSLTLRRF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++    L  +  A+   V    + LT KE  ++E L L +   +++E  + H++D
Sbjct: 127 TQSDVVLTCRKLRFDTKARIASVDSETLSLTRKETGILEYLMLNQGRPVSQEELIEHVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                      V I  LRKKL   A G + I    G GYV+ ++
Sbjct: 187 SSVNSFSNATRVHISSLRKKL-RIALGYDPIRNRIGEGYVMEDS 229


>gi|330466506|ref|YP_004404249.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809477|gb|AEB43649.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 222

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERHLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELASSGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI-ELLSLRKNTTLTKEMFLNHLY 179
             A  ++   DL V+   +T    G  + LT KE+ ++ ELL  R    ++ E  L  ++
Sbjct: 121 PAAPPVLELADLVVDPARRTATRGGAPVELTNKEFGVLCELLKAR-GAVVSSEELLERVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   I+ V +  LR+KL    G    IETV G GY
Sbjct: 180 DANTDPFTTIVRVTVMTLRRKL----GDPPLIETVVGAGY 215


>gi|317405506|gb|EFV85814.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 237

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A ++   L++  F   V   G  G++  +   FDA+ILD+GL  + G  
Sbjct: 12  RILIVEDDHIIAGNLYTFLEARGFLPDVAYSGPAGLQRLEEQRFDAVILDIGLPGMDGHA 71

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL ALR   ++  PV +L+   S+EDK+ G   GADDY++KPF   E+ AR+ A+++R++
Sbjct: 72  VLHALRADRRLPVPVLVLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRAK 131

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G     + V GDL+ +  ++T  + G  +HLT K   ++E L       +++E   + L+
Sbjct: 132 GSTVDTVRVFGDLAYDTRSRTASIGGKPVHLTRKATLILEALLRDPGRVVSREELESQLW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G + P    +   +  LR+ L++A  G + IET+ G G+ L
Sbjct: 192 -GSEPPSSDALRSQVHLLRRALADA--GFDGIETLHGTGWRL 230


>gi|300689792|ref|YP_003750787.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299076852|emb|CBJ49465.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 236

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V     G   +E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQVGHRVLAVHDGVFAVEHLARQSHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    STPV IL+   S++DKV GL +GADDY+ KPF   ELVAR++A++RR  
Sbjct: 61  TLLSQYRARDRSTPVLILTARDSLQDKVGGLNAGADDYLLKPFEMLELVARVQALLRRRG 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +     V G L ++   + + V    + L+ +E+ ++ELL  R+   ++K    +
Sbjct: 121 DNGEPMPRPDTVVGRLRMSGAERRIFVDAAALELSPREFAVLELLMQRQGRVVSKVQLQD 180

Query: 177 HLYD--------GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL          G D      I+V++ ++R+K+  +   +  I TV G GY+L+  A
Sbjct: 181 HLASFGHALGEAGHDVVGDTAIEVYVHRVRRKIEQS---EAEIVTVRGFGYLLQARA 234


>gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23]
 gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23]
 gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R +R
Sbjct: 65  SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L  +
Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N
Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|171058380|ref|YP_001790729.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775825|gb|ACB33964.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LL EDD  LA ++   L++  F V V D G     L     FD  I+DLGL  + G 
Sbjct: 1   MRALLAEDDAILADALSANLQAAGFEVEVADNGAVAEYLLIRQSFDVGIVDLGLPMVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  +R AK   P+ IL+ +  +E +V GL +GADDY++KPF+  EL ARIRA++RRS+
Sbjct: 61  TVVSRVRQAKPKLPLIILTALDGLEHRVAGLNAGADDYLTKPFDFPELEARIRAVLRRSQ 120

Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           G          + +  V   L  + D +   V G  I L+ +E+ +++LL  ++   +TK
Sbjct: 121 GGEPASASTDDSPAATVVAQLQFDRDTRRATVAGQPIELSPREWLLLDLLLSQRRKVITK 180

Query: 172 EMFLNHL-YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E        D  +      ++V+I +LR+KL  +  G   I TV G GY+L
Sbjct: 181 EQIAQAWSADLSESGGPSSLEVYIHRLRRKLEGSGVG---IRTVRGLGYLL 228


>gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 232

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK++A   +  L+   F   +   G  G+E     E+D I+LD+ L    GFE
Sbjct: 3   KILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K   P+ +++        +RGL  GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  ICQEIRKVK-EIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G +Q++I  G LS+N D++ V +    I L  KE++++  L+   N   +K+
Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      +   + V I ++R+K+        YIETVWG GY
Sbjct: 182 TLLDRIWGEESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGY 228


>gi|261250867|ref|ZP_05943441.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260937740|gb|EEX93728.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 218

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L  ++   L+   + V     G    ++     F  IILDL L D  G 
Sbjct: 1   MRILIIEDDLLLGRTLVSSLERCGYTVDWLTEGSGVKQVLSLETFTLIILDLSLPDGDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR AK   P+ ILS   S +D + GL SGAD+YI KPF+ EEL+ARIR IVRR  
Sbjct: 61  TLLKSLRQAKYDLPIIILSARDSNKDIILGLDSGADEYIGKPFSFEELLARIRVIVRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I  G+  +NL+   V+     + LT  E++++  L    +  ++K   L  +  
Sbjct: 121 SSSTHIITKGNFELNLNDYIVKYNDEVLKLTKNEFKILSYLVSNNSLVVSKPQLLQIING 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +      ++V I  LRKKL N     N I+T+ G GY + +
Sbjct: 181 WSETSTENSVEVHIHNLRKKLPN-----NVIKTIRGIGYTIEK 218


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +     V     G+ G  L     +DA+++D  L    G 
Sbjct: 17  MKILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRMLPKRDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  ++D+V GL++G DDY++KP+   EL+ARI  + RR  
Sbjct: 77  SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q      GDL ++  +  V   G  I L  +EY+++E L       +T+ M L H++
Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+     G+  ++TV G GY+++
Sbjct: 197 DYHFDPQTNVIDVHISRLRSKIEKDF-GEPLLKTVRGAGYMMK 238


>gi|28210164|ref|NP_781108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium tetani E88]
 gi|28202600|gb|AAO35045.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium tetani E88]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++IED+ ++   +   LK E + V  T   ++  ++ K +  + ++LD+ L D  GFE
Sbjct: 4   KIIVIEDEFSINDILTFALKEEGYRVKSTFSSQEARKIMKEFRPNLVLLDINLPDESGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   K   P+ +++  + + DKV GL+ GADDYI+KPF+ +E++ R+R  +RR + 
Sbjct: 64  LCKFI-TCKYKIPILMITARNDLVDKVLGLELGADDYITKPFHIKEVMTRVRVALRRVKK 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++      + + +  ++ +NL+++ V      I L  KEY ++  L+  +N   ++E  L
Sbjct: 123 YSVVKENKEFIELNDEVKINLESREVFKNNREIKLKPKEYDLLVFLAQNRNIVFSRETIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++   + E++ +D+ + +LR KL ++  G++ IETV+G GYV+R
Sbjct: 183 DRVWELEYDGEIRTVDIHVRRLRAKL-DSNNGQSIIETVFGVGYVMR 228


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +++ I+L L   N+       GED +E  +   FD I+LD+ L  I GF
Sbjct: 2   IKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVMLPKIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   ++  +  PV  L+  +S+ DKV GL++GADDYI+KPF   EL+ARI  ++R   
Sbjct: 62  TLLE--KIKPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  ++I   D+ +NL   T    G  + LT KE++++  L   KN  LT+E  +  ++ 
Sbjct: 120 KNT-NVINFEDVEINLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E + ID  I KLRKKL      K+ I+TV+  GY L
Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRL 215


>gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
 gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
          Length = 247

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  E + V     G + +E+    +F  I+LD+ L  + G EV
Sbjct: 11  ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
           LR L+  K  TPV +L+   ++ DKV GL +GA DYI+KPF  EEL+ARIR  +      
Sbjct: 71  LRRLQQEK-PTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129

Query: 117 ----RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               RR       +   G L ++     V   G  I LT +E+QM++ L   ++  LT+E
Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + LN +       E  ++DV+I  LR K+  A   K  I+TV G GYV++  A D
Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIK-MIQTVRGVGYVIKSEAPD 243


>gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 5   LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R +R
Sbjct: 65  SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L  +
Sbjct: 124 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N
Sbjct: 184 WGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229


>gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 257

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKF--YEFDAIILDLGLTDI 57
           +R+LL++D+ AL + +++ L  E    +V D+  +G E + KF     D ++LD+ L D+
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV 88

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++R
Sbjct: 89  DGLRILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 148

Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R+       A++L V GDL V+  ++ V      + L+  E++++  L       L++  
Sbjct: 149 RASQQPAPTAETLKV-GDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTE 207

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ +++        I+D++I  LRKK+ +  G +  I TV G GY+LR 
Sbjct: 208 ILDRVWNYDFAGRTSIVDLYISYLRKKIDS--GREPMIHTVRGVGYMLRP 255


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   ++    ++  G L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G++ I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGY 224


>gi|323528170|ref|YP_004230322.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385172|gb|ADX57262.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 231

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ S+   L S    V     GE    + +  ++  +ILD+GL  + G 
Sbjct: 9   MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV +L+   S+E++VRGL  GADDY++KPF   EL AR RA++RR  
Sbjct: 69  EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   SL   G L+ +   +   + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 129 GQEASLAQCGTLTYDSVDRGFTLDGEPLALTPRERSVLEVLMLRNGRAINKETLSEKIFG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL  ++ G   I T+ G GY+L
Sbjct: 189 LDESVNADAIEIYVHRLRKKLERSSVG---IVTLRGLGYLL 226


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  +L+ E F V V + G D ++       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR  + + PV I+S   +  DKV GL+ GADDY++KP++  EL+ARI+A++RR + 
Sbjct: 63  VCRALR-TRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G + ++++   V V G  I L  KE++++E+L       LT+   ++ ++
Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV + +LR KL        ++ TV G GY
Sbjct: 182 GADYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGY 221


>gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 226

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI LIED+  +A  I+  L+   + V V   G  GIEL +   +D +ILD+ L  + G +
Sbjct: 3   RICLIEDEHKVAAFIKNGLEEHEYLVNVATDGARGIELIENNNYDLLILDIMLPVVSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ + +++DKV GL++GADDY+ KPF+  EL+ARI A++RR   
Sbjct: 63  VCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRRQTM 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++   KT    G  I LT KEY ++EL    +   LT++     ++
Sbjct: 123 EKVDAEILKFDDLELDTSGKTATRAGKTIVLTAKEYALLELFMRNQGKILTRQYIAERVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +     IDV++  LR K+     GK  + T  G GYVL++
Sbjct: 183 GIGFDTGTNFIDVYMSFLRNKIEKGFDGK-LLHTAIGMGYVLKK 225


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|126700886|ref|YP_001089783.1| two-component response regulator [Clostridium difficile 630]
 gi|255102435|ref|ZP_05331412.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308339|ref|ZP_05352510.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|296451936|ref|ZP_06893652.1| response regulator [Clostridium difficile NAP08]
 gi|296879670|ref|ZP_06903646.1| response regulator [Clostridium difficile NAP07]
 gi|115252323|emb|CAJ70164.1| Two-component response regulator [Clostridium difficile]
 gi|296259250|gb|EFH06129.1| response regulator [Clostridium difficile NAP08]
 gi|296429339|gb|EFH15210.1| response regulator [Clostridium difficile NAP07]
          Length = 225

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 125/220 (56%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  + +  ++   +  FNVY ++  +D +++ +    D IILD+ L DI G++
Sbjct: 3   NLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGYK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++  K++ P+  LS     E+KVRG  +G DDYI+KP++ +EL  RI A +R+ + 
Sbjct: 63  MCNDIK-EKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELRIYARMRQYKN 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++    L +N++++ V   G  I LT  E++++  L+  K    +K    N ++
Sbjct: 122 ITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYNQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  +   + V I ++RKK+++ +    YI+TVWG+GY
Sbjct: 182 KMPDIGDQHTVQVHIAQMRKKINSLSREHQYIQTVWGKGY 221


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 11/239 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59
           +RILL++D+  L   + L L  E + V V   G  G I+     E D I+LD  L D  G
Sbjct: 12  IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V+ L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 72  VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131

Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +G   S          +  G L++N + + V   G +I L+ KEY+++  L       L 
Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +   +  ++      +  ++DV+I  LR+K+ N     + I TV G G++LR+ +   T
Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVEN-KDLPSLIHTVRGVGFILRDESTSTT 249


>gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104]
 gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium
           104]
          Length = 254

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKF--YEFDAIILDLGLTDI 57
           +R+LL++D+ AL + +++ L  E    +V D+  +G E + KF     D ++LD+ L D+
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEG---WVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDV 85

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++R
Sbjct: 86  DGLRILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLR 145

Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R+       A++L V GDL V+  ++ V      + L+  E++++  L       L++  
Sbjct: 146 RASQQPAPTAETLKV-GDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTE 204

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ +++        I+D++I  LRKK+ +  G +  I TV G GY+LR 
Sbjct: 205 ILDRVWNYDFAGRTSIVDLYISYLRKKIDS--GREPMIHTVRGVGYMLRP 252


>gi|312794869|ref|YP_004027791.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
 gi|312166644|emb|CBW73647.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI
           454]
          Length = 228

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R A   TPV +L+    + D+V+GL SGADDY+ KPF   EL ARIRAI+R
Sbjct: 58  DGMTLLARFRQANRHTPVIVLTARDELNDRVQGLNSGADDYMIKPFEPAELEARIRAIMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G L ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGSHGDMPRPEVSLGGLRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL +    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEHC---RVEIVTVRGFGYLLQE 223


>gi|301166631|emb|CBW26207.1| putative two-component system response regulator [Bacteriovorax
           marinus SJ]
          Length = 224

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD +L  S++  L  E   V          EL    E   IILD  L D  G +
Sbjct: 3   KVLLVEDDDSLGSSLKSYLTGEGHEVVWAQSLSMARELKSDEEI--IILDWMLPDGQGVD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
            L+ LR A+I+ PV +L+  + + DKV GL++GA+DY++KPF   EL+ARIR  +R    
Sbjct: 61  FLKELREAEINKPVIMLTARTDLIDKVIGLEAGANDYMTKPFEPRELIARIRVQIRDHAK 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +  ++  GDL +N + + +   G  I  T  E+  + LL+   N   ++E  LN 
Sbjct: 121 KDHDSSDGVLTRGDLVINQNEREIRWHGEVIEFTKMEFDFLTLLAESPNRAFSREEILNK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   + P  + +D  + ++R+KLS+       IETV G GY  R N
Sbjct: 181 VWGYENYPSTRTVDTHVLQIRQKLSD-----ELIETVRGIGYRFRFN 222


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL L+ E + V     G DG+E      FD IILD+ L  + G E
Sbjct: 5   KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR      PV +L+    I DKV GL  GADDYI+KPF  EEL+ARIR   +  R 
Sbjct: 65  VLRRLR-QNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L +N+           + LT  E+ +++ L + KN  L++E  L  ++
Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  ++DV+I  LR K+ +    K +I TV G GY L++
Sbjct: 184 GYDYTGDTNVVDVYIRYLRSKIDDRFNHK-FIYTVRGVGYQLKD 226


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I    L+++++++ V  +   I  T KE+ +IELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R KL       N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227


>gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
 gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD+  A  I   L    + V     G  G+ + +  ++D +I+D  L ++ G 
Sbjct: 1   MHILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    STPV ILS +  ++D+V GL +G DDY+ KP+   EL+AR++++ RR  
Sbjct: 61  SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H Q ++   DL ++   + V   G +I+L  +E++++E L       +T+ M L  +
Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR K+ +       I T  G GY +
Sbjct: 181 WEYNFDPQTNVIDVHISRLRSKI-DKDFNPPLIHTERGAGYSM 222


>gi|88858419|ref|ZP_01133061.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
 gi|88820036|gb|EAR29849.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata
           D2]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLI+DD AL   +   L ++ FN+ + + G+ G+      +F  I+LD+ L    GF
Sbjct: 1   MQILLIDDDIALCELLNEYLGAQGFNLVIKNDGDAGLRAALADDFALILLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDY++KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKLLRQQKL-TPVIMLTARGEDFDRIFGLELGADDYLAKPFNHRELLARVKAITRRIE 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  +    ++  D+ V   ++ V   GH + LTG EY+++ LL       ++KE    
Sbjct: 120 HITAANKTQNLLWHDIEVKTQSREVYAAGHALLLTGTEYEILHLLLKNAGEIISKEQISE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   R     + ID+ +  +RKK++     +  I+T+ G GY+ 
Sbjct: 180 QVLGRRLAAFDRSIDMHVSNIRKKIAEHISDER-IKTIRGTGYIF 223


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + +  +  GED +   K   FD ++LD+ L  + GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKMDGFTV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+   
Sbjct: 66  CKKVREFS-EVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQQ 124

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + S   ++  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 SNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D     +V+ +DV + +LR+K+ +      +I T  G GY    N 
Sbjct: 185 DYEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPNV 230


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   ++  L    F V +   GE+G++     ++D I+LD+ L    GF 
Sbjct: 4   RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR   IST + +LS      D+V GL  GADDY++KPF+  E+V++I+AI+RR   
Sbjct: 64  VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               ++    G  S+ LD    E  V G  I  T KEY+++E L   K   +++++ L+ 
Sbjct: 124 LSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGYVLRENAKD 227
           L+    + + +I+DV I K+R+KL      K+Y   I+T+ G GY+L +   D
Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKL------KDYGIKIKTIRGIGYMLEDEVHD 230


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   ++  L  +   V     GE+ +E  +  ++D I+LD+ L  + G  
Sbjct: 13  RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ AR++AI+RR+  
Sbjct: 73  VCQQIREFS-NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     ++I  GD+ ++ D++++ +    I+LT KE+ ++E+L++      +++  L 
Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + + +DV + +LR+K+ N      Y+ T WG GY
Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGY 234


>gi|153939321|ref|YP_001389971.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935217|gb|ABS40715.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318056|gb|ADF98433.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 227

 Score =  122 bits (306), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L+IED+ ++   +   L+++ + V    L +D  +   F+  D ++LD+ L D  GF
Sbjct: 3   FKVLVIEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFRPDLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +      + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+T +G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227


>gi|330721725|gb|EGG99721.1| two component transcriptional regulator2C winged helix family
           [gamma proteobacterium IMCC2047]
          Length = 219

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  LA +++  L+ +   V     GE  + +    + D +ILDLGL DI G 
Sbjct: 1   MQILLVEDDYPLAKALQQALQEQQHTVNAVGTGEAALHIIDTEKPDIVILDLGLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      P+ +L+  + ++D++ GL SGADDY++KPF   EL AR+R + RR  
Sbjct: 61  DVLKKARKKHSDLPILLLTARAELDDRITGLDSGADDYLAKPFEMAELFARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S IV  ++ ++ +  +V+  G  + L+ KEY +++ L        T+      LY 
Sbjct: 121 TAHSSEIVIHNVCLDCNNNSVKFNGTELELSRKEYMLLKSLMENAGRIQTRSTLERRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E     ++V +  LRKKL     G N+I+TV G GY
Sbjct: 181 WDEEVASNALEVHVHHLRKKL-----GSNFIKTVRGVGY 214


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +A  +EL LK++ F VY    G + ++     + D  ILD+ L DI G 
Sbjct: 1   MKVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    + P+ +L+   +  DK+ GL  GADDY++KPF   EL+AR++A +RR +
Sbjct: 61  EICQTIR-ENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++++  G L+++ D     +    + LT  E+ ++ LL   K   +T +    
Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179

Query: 177 HLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+  +        I V I  LR+K+ ++A    YI+TVWG GY
Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGY 223


>gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 247

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   +   L+SE + V +   G   +E    +  DA++LD  L D  G 
Sbjct: 21  VRVLVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGFHPDAVVLDWMLPDTDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR       V  L+   ++ED++ G+ +G DDY++KPF  EE++AR+R +VRR  
Sbjct: 81  GVLHALRRRIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAG 140

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SR      +V  DL ++ +A+ V   G  + L+  E++++  L       L+KE  L+ 
Sbjct: 141 MSREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDR 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++         +++++I  LRKK+   AG    I TV G GYVL+++
Sbjct: 201 VWSYDFGGRAHVVELYISYLRKKID--AGQAPLIHTVRGVGYVLKQD 245


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ ED+ A++  +   LK E+++V +   GE+ + +      D ++LD  L  + G E+
Sbjct: 5   VLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVSGIEI 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R   ++   P+ +L+      D++RGL +GADDY++KPF+  EL+AR+RA++RR R
Sbjct: 65  CRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +  I  GD+ ++  A  V      IHL   E+++++          ++E  L+ ++
Sbjct: 125 PGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLDTVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV + +LRK L   +GG++ I TV   GY LR +
Sbjct: 185 GSDVYVEARTVDVHVGRLRKALRQ-SGGEDPIRTVRSAGYALRAD 228


>gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC
           824]
 gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA
           2018]
          Length = 231

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + I+++EDD  + + +++ML+ + +NV     G + +   K  EF  ++LDL L  I G 
Sbjct: 5   INIIVVEDDNDINNMLKIMLERKGYNVVQAYSGTEALLHVKTQEFQLMLLDLMLPGISGD 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ +R    + PV ++S   S + KVR L+ GADDYI+KPF+ +++ ARI + +RR  
Sbjct: 65  ELLQKVRGIS-AMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYI 123

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             G  +S    IV  D+ ++  A  V V G R+ LT +E++++E+L L K    +K    
Sbjct: 124 KFGKDESFNSKIVFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     +   ++V I  LR KL  A   + YIETVWG GY L+
Sbjct: 184 ESVWEDTYMGDDNTLNVHISNLRNKLLKANSKEEYIETVWGMGYRLK 230


>gi|293607417|ref|ZP_06689756.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814261|gb|EFF73403.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 223

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  +   ++  L+   + V       +G        +DA++LDLGL    G 
Sbjct: 1   MRILIIEDDPLIGDGLKSGLRLLGYAVDWFTSSREGDHAMGVVHYDAVVLDLGLPLEDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R A  S PV IL+   +++ ++ GL +GADDY+ KP   +EL AR+RA+ RR  
Sbjct: 61  TLLARWRNAGRSVPVVILTAREAVDSRIAGLDAGADDYLIKPIALDELAARLRAVTRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +   GDL  +     V  +G ++ LT +E  ++EL     +  LT++   + LYD
Sbjct: 121 GKPEPVWRHGDLDYHPALHEVHWKGQKVDLTTREALLLELFLTHPHRVLTRDFIRDKLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++VF+  LRKK+         + TV G GY L
Sbjct: 181 WDAELESNALEVFVHHLRKKIH-----PKIVRTVRGSGYAL 216


>gi|284046586|ref|YP_003396926.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950807|gb|ADB53551.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 224

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  +  L+L++  F V VT  G+ G++  +   F   +LD+ L  I G  
Sbjct: 7   RVLFVEDDPTIRETTALVLETFGFEVRVTADGQAGLDAFRAEPFHVALLDVMLPRIDGIS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R +R      PV +LS  S   D V GL++GADDY++KPF+   L AR+RA++RR+  
Sbjct: 67  LVRMIRETS-PIPVVLLSARSEPLDVVAGLEAGADDYVAKPFDGPVLAARLRAVLRRAER 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  + ++  GDL ++    +  + G  + LT  E +++  L+      L++ + L  ++
Sbjct: 126 QADERRVVTIGDLELDAAGMSARIAGRPVSLTTTEARLLIELAQNAGVVLSRAVLLERVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   + + +++DV I +LR K+     G+  IETV G GY L
Sbjct: 186 EHAWDGDTRLVDVHIQRLRAKI-----GRERIETVRGAGYKL 222


>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
 gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
 gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
          Length = 239

 Score =  122 bits (306), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G       L +N  ++ V +   ++ LT +E+ ++   +   +   ++   L
Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 133/240 (55%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+ E ++V     G +G E+   + +D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + + LR  KI  P+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR  S
Sbjct: 63  ICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 120 RGHAQ-------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
           + +A+              L+  GD+ ++     V V+  ++ +T KE++++  +  R N
Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L++E  L+ +++     E +I+DV I  LR+K+        YI TV G GY   +  K
Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEDPKK 242


>gi|134293532|ref|YP_001117268.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134136689|gb|ABO57803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 231

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   ++  L  E + V     GEDG      +++D ++LD+ L  + GF
Sbjct: 1   MKVLIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D+VRGL+ GADDY++KPF+  EL+ R+RA+ RR+R
Sbjct: 61  GVLRALRGQK-QTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRAR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT +E+Q++ +L+ R    L+K      ++D
Sbjct: 120 VQESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGDVLSKTTIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    +++  I +LR KL      K  + T+ G GYVL
Sbjct: 180 VNFDSNANVVETAIKRLRAKLDGPFTDK-LLHTIRGMGYVL 219


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  +   +   L  E F V+   L EDG  L +       D I+LDL +    
Sbjct: 11  KILVVDDDARIRDLLRRYLTQEGFEVF---LAEDGKALTRILLRESVDLIVLDLMMPGED 67

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 68  GLSICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRR 127

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +    Q ++  G    +L A+T+   G  + LT  E+ M++ L       ++
Sbjct: 128 RPAPEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMS 187

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E           EP  + +DV + +LRK +        YI+TVWG GYV 
Sbjct: 188 REKLAQQARGREFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVF 238


>gi|317406334|gb|EFV86566.1| hypothetical protein HMPREF0005_05179 [Achromobacter xylosoxidans
           C54]
          Length = 222

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL+EDD  L  ++   +      V +V D+    + L + + + A++LDLGL    G
Sbjct: 1   MQVLLVEDDAMLGDALRSSMVGAGLRVDWVRDVPAARLALVE-HGYGAVLLDLGLPGGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ LR    +TPV I++    + ++V+GL +GADDYI KPF  +EL+AR+RA+VRRS
Sbjct: 60  LAVLKHLRARYDATPVLIITARDRLSERVQGLDAGADDYIVKPFQLDELLARLRAVVRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S++   D+ ++   + V   G  + L+  EY+ +  L  R   T+++E     +Y
Sbjct: 120 SNSVVSVLRCRDVQLDPARRVVTRAGAEVVLSASEYRTLLALMERAGQTVSREQLEAAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G    E   + V++ +LR+KL     G + + TV G GY
Sbjct: 180 GGSGTIESNTVAVYVHQLRRKL-----GDDLVATVHGLGY 214


>gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G  G  L      D ++LDLGL DI G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATG--GQALADARGVDLVVLDLGLPDIDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  ARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQTSE 121

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  +   D+ +++ A         + LT KE+ ++ +L     + + +E  +  ++  
Sbjct: 122 PAEGELRAQDIRMDVAAHRAFAGDTELSLTAKEFDLLRVLLREAGSVVARETLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 K +D+ +  LR+KL + A   +YI TV G G+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGF 219


>gi|308176012|ref|YP_003915418.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743475|emb|CBT74447.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  ++  +   L++      + + G+DG  L    + + IILDLGL D  GF 
Sbjct: 3   QILIIEDEPRISSFVAKGLRAAGLTSSIAETGQDGFNLAIEGDHELIILDLGLPDEDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LRVA+I TPV IL+   S+ED V GLQ+GADDY++KPF+ +EL+AR+R  +R    
Sbjct: 63  VLRRLRVAQIDTPVIILTARGSVEDTVAGLQNGADDYMAKPFHFDELLARVRLRLRTEDN 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S +   +L ++L  + V V    + L+ +E+ + E         L++E  L+ ++ 
Sbjct: 123 APEVSSLTHENLHMDLLRRRVTVNEREVDLSAREFALAEAFLRNPGQVLSREQLLSRVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++DV++  LR KL     G    ETV G GY L
Sbjct: 183 YDFDPGSNVVDVYVRYLRNKL-----GSERFETVRGFGYRL 218


>gi|255065068|ref|ZP_05316923.1| QseB protein [Neisseria sicca ATCC 29256]
 gi|255050489|gb|EET45953.1| QseB protein [Neisseria sicca ATCC 29256]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59
           MR+LL EDD  +A +I   LK      Y  D  ++G ++    +     L L    +PG 
Sbjct: 1   MRVLLAEDDNMIAQAIAANLKDSG---YAVDWVKNGSQVSTALQAQNYDLLLLDLGLPGK 57

Query: 60  --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              +VL  +R     TPV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++R
Sbjct: 58  DGLDVLTQIRHEGSQTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  GH+Q+L+  G L++N     VEV+G    + L+ KE+ +++ L +R    L++    
Sbjct: 118 RHSGHSQTLLTNGALTLNPATYQVEVKGENKPVLLSNKEFAVLQALMMRPGIILSRSDLE 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +Y   +E E   +D  I  LRKKL     GK +I+ V G G+++
Sbjct: 178 DKIYGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGVGWLV 218


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L    +++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+T+WG GY
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGY 228


>gi|255036915|ref|YP_003087536.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949671|gb|ACT94371.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K LA SI   L  E F   V +      E    Y++D  I+DL L D  GF
Sbjct: 1   MKILVVEDEKGLAESITDYLSREGFVCEVANTFWQADEKISLYQYDCTIVDLTLPDGNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ L+    +T + I+S  +++EDK++GL+ G+DDY++KPF+  EL AR+++++RR  
Sbjct: 61  DIIQTLKKIAAATGIIIISARNTLEDKLKGLEIGSDDYMTKPFHLSELNARVKSLIRRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + +   D+ VNL A+ V ++     L+ KEY ++       +  LTKE    HL+ 
Sbjct: 121 FGGNNDMTWKDIRVNLPARKVFIKDIETTLSKKEYDLLLYFLSNIDVALTKESIAEHLWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D  + + ++   I  LR+K+    GGK+YI++++G GY
Sbjct: 181 DNMDSADSLDMVYSHIKNLRRKIV-EKGGKDYIQSIYGIGY 220


>gi|300690116|ref|YP_003751111.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07]
 gi|299077176|emb|CBJ49802.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07]
          Length = 243

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  I   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   KVLLIEDDDRLAQLISEYLGNYEFTVAVVRRGDTAVAAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR+RA++RR+  
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDPYDQVAGLEIGADDYVLKPIEPRLLVARVRALLRRAAP 127

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +          +V G+L ++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 AMSTSEPAVPHDDTLVFGELVISPPNRTVTWRGQPVELKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A
Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSA 240


>gi|118591736|ref|ZP_01549132.1| two-component system, regulatory protein [Stappia aggregata IAM
           12614]
 gi|118435729|gb|EAV42374.1| two-component system, regulatory protein [Stappia aggregata IAM
           12614]
          Length = 212

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 105/178 (58%), Gaps = 4/178 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           +D I+LD+ L D  G E+L+ +R     TPV +L+   S++D+V  L SGADDY+ KPF+
Sbjct: 34  YDVIVLDINLPDGLGTELLKEIRARGERTPVLMLTAEFSVDDRVSSLNSGADDYLVKPFD 93

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
             EL ARIRA+ RR +G     +  G L+ N  A+ V   G  I LT +E+ ++E+L   
Sbjct: 94  HRELEARIRALYRREQGDKAEELTLGSLTFNASARVVRQDGSPITLTRREFSLLEILVRN 153

Query: 165 KNTTLTKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  T++KE     ++  +D +  +  +++++ +LRKKLS   GG   IET  G GY L
Sbjct: 154 RGKTVSKERLFEGVFSFQDTDVSMNALELYVARLRKKLS---GGSVRIETQRGLGYKL 208


>gi|332533733|ref|ZP_08409591.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036788|gb|EGI73250.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED +AL  S+++ L +  F V  T  G +G+ +     +D ++LDL L  + G 
Sbjct: 1   MKILVIEDSEALRRSLQVGLSNLGFTVDETGDGSEGLSMALSGNYDLLVLDLMLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ALR +   + V ILS  S  +DK+ GL  GADDY++KPF+ EEL AR+ A++RR S
Sbjct: 61  SILQALRSSNSQSRVLILSARSEPQDKISGLMKGADDYLTKPFSFEELHARVLALLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + Q+ +  GD  ++L  KT+  + H I LT  EY++IE L       L  E+    + 
Sbjct: 121 LQNQQNTLTVGDCVLDLSLKTLHYKQHAIELTPNEYKIIECLFNAPERVLGLELISEAVV 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              D      ++  I  +RKK+     G+  I+   G GYV
Sbjct: 181 GQFDMLSKNALEAHISTIRKKVRQ-FDGELPIKNKRGFGYV 220


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ V   + GE  + L    ++D I+LD+ +  + G E
Sbjct: 6   KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K +TPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCQELRKTK-ATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L+++ DA  V V G  I LT KEY+++  L+   +   ++E 
Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  +++     +++ +D  I +LR+KL+  +      I TVWG GY
Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGY 231


>gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S E +LK   F+V+  + G +G++  +   +D ++LDLGL  + G  
Sbjct: 3   KILIIEDDFMIAESTETLLKLHQFDVHWVNNGIEGLKQLQQQVYDIVLLDLGLPMMDGIL 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS G
Sbjct: 63  VLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS-G 121

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + I T      G L ++L+       G  I L+ +E+ ++  +    N   +K    
Sbjct: 122 LKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDLE 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LYD   +     ++V+I  LR KL     GK++I T+ G GY L
Sbjct: 182 DKLYDFDSDVSSNTVEVYIHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|312888723|ref|ZP_07748290.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298826|gb|EFQ75928.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++ L  +I   L  E             I+    Y +D I+LD+GL D  GF
Sbjct: 1   MKLLVIEDEQKLLENIVTYLNGEGDICESCSTLTAAIDKLSVYNYDCILLDIGLPDGEGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A  +  V I+S  +SI+DK++GL  GADDY++KPF+  EL AR+ AI RR  
Sbjct: 61  AVLDFLRTAMRNEAVLIISARNSIDDKIKGLNIGADDYLTKPFHLAELKARLAAIYRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            ++ +L+V  +++++L  ++V V    + LT KEY M+      K   ++K     HL+ 
Sbjct: 121 SNSSNLLVFNEITIDLLGRSVYVNDTTLILTRKEYDMLLYFIANKGKVVSKNALAEHLWG 180

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D       I   I  LRKK+ +     +Y+++V+G GY
Sbjct: 181 DEMDMHDNFDFIYTHIKNLRKKMLD-LNAHDYLKSVYGIGY 220


>gi|284038331|ref|YP_003388261.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817624|gb|ADB39462.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ LA  I+  L+       +T  G +G++      +D ++LDL L    GF
Sbjct: 1   MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR   ++ PV ILS +S  E  V+GL  GA DY+ KPF+  EL+ARIR + RR+ 
Sbjct: 61  EVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL + L +  V      + LT +E+ ++ELL  R    +TK      ++ 
Sbjct: 121 MGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLELLMRRAGQLVTKNEIAEKVWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +I+V I +LRKK+ +A G    IET+ GRGY L+
Sbjct: 181 MDFDMGSNVIEVHIYQLRKKI-DATGIPGLIETLIGRGYRLK 221


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + +     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L +   A+ V V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + +     ++  I +LR K+         I TVWGRGY L
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKL 231


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L+   + V +   G DG+ +     +D ++LD+ L  I G+
Sbjct: 1   MTILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  EIMRALRTRR-DLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL +++  + V  +G  I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 IRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV I +LR K+ +    K  I TV   GY  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDHPF-EKKLIHTVRSIGYTF 219


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 9/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V+V   GE+ +   +  + D I+LD+ L    G EV
Sbjct: 5   ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 65  CREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHATA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++G   + IV GDL+++ D+  V  +  +I LT +E+++I  L+      +T+E  
Sbjct: 124 PAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      YI T  G GY L+   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYLKAGEED 236


>gi|325525528|gb|EGD03325.1| signal transduction response regulator [Burkholderia sp. TJI49]
          Length = 196

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 3/193 (1%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           GE    + K   +DA++LD+ L  I G EVL  LR    + PV +L+   S++DKV    
Sbjct: 4   GERADTVLKTERYDAVLLDMRLPGISGKEVLARLRRRNDNVPVLMLTAHGSVDDKVDCFG 63

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152
           +GADDY+ KPF   ELVARIRA++RR  G   + +  GDL      +        + L  
Sbjct: 64  AGADDYVVKPFESRELVARIRALIRRQAGVGATQLACGDLVYAFGTREFRCGDAPLALRR 123

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           +E+ ++E L L++N T++K   ++ ++   DEP    ID++I +LRK L   A     I 
Sbjct: 124 REHAILETLMLQQNKTVSKARLMDSVFALDDEPSADAIDIYIHRLRKHL---AASTAEII 180

Query: 213 TVWGRGYVLRENA 225
           T+ G GY+LR  +
Sbjct: 181 TLRGLGYILRAKS 193


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L + + +D +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A+ +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDTK-LIHTLRGVGYVL 220


>gi|311106334|ref|YP_003979187.1| transcriptional regulator QseB 2 [Achromobacter xylosoxidans A8]
 gi|310761023|gb|ADP16472.1| transcriptional regulatory protein QseB 2 [Achromobacter
           xylosoxidans A8]
          Length = 222

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   I   L++    V       +         F+A++LDLGL D  G 
Sbjct: 1   MRVLLVEDDELIGKGIVAGLRAHGIMVQHVCTAVEAEAAQTGNSFNALVLDLGLPDRDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R  +   PV ILS   +IE ++ GL  GADDY++KPF+  EL AR+ A+VRR++
Sbjct: 61  ELLSVVRAIEPCLPVLILSARDAIEHRIAGLHQGADDYMTKPFDLRELAARLHALVRRTQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G L +  ++    ++G  I L+ +E  ++  L+      +  ++    LY 
Sbjct: 121 GRAAQIIAAGPLRLEPESGLAWLEGQAISLSRREVDLLAHLATADARWIAPDLLSERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  LR+KL     G   IET  G GY L
Sbjct: 181 LGEEVSSNALNVHIHNLRRKL-----GAEVIETSRGLGYRL 216


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +        I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 132/227 (58%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           +IL+IEDD+ +   ++L L+ +++ +   + G +   +L K  + D +ILDL L DI G 
Sbjct: 3   KILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVK--QPDLVILDLMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +++R  K   P+ +++  ++ +DK+ GL  GADDYI+KPFN  E+VAR++A +RR +
Sbjct: 61  SICKSIR-KKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYK 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +++     I    L++N  +K V +    I LT  E++++E+L  +K   L+ E   
Sbjct: 120 QYDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELF 179

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++ D         I V +  LR+K+ ++     YI+TVWG GY++
Sbjct: 180 NLIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYII 226


>gi|330957821|gb|EGH58081.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQCCGVLTYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHAVAIVTFRGLGYLL 218


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L A  V   G+ I L+  E+ ++  L L K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYDLK-LIHTIRGLGY 217


>gi|26988153|ref|NP_743578.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982886|gb|AAN67042.1|AE016333_3 transcriptional regulatory protein TctD [Pseudomonas putida KT2440]
 gi|313500352|gb|ADR61718.1| TctD [Pseudomonas putida BIRD-1]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+ L LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218


>gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   +D +ILD+ L +I G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNLPEIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A+ +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDNK-LIHTLRGVGYVL 220


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V       + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 63  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234


>gi|332716740|ref|YP_004444206.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063425|gb|ADY67115.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 217

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   + +    V    L +D         +  I+LD+ L D  G 
Sbjct: 1   MRVLLVEDDHVLGEALRDHVAAAGHAVDWFKLLDDATAATLTMAYGLILLDMRLPDGDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR    STPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 61  TLLQSLRNRDDSTPVIILTAHDQVSDRIAGLNAGADDYLVKPFDLNELSARMLAVSRRYE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I    + +N  A+ + V G    L+ +E+ ++E L       ++K    + LY+
Sbjct: 121 GRSAPVIRLPGIEINQVARNIVVDGTAQTLSAREWAVLEKLVEHPGAVVSKSQLHDTLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E   ++V+I +LRKK+     G + +ETV G GY +R
Sbjct: 181 FGAEIESNTVEVYISRLRKKI-----GHDRVETVRGVGYTIR 217


>gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 124/219 (56%), Gaps = 4/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A+ HS++  L  E F+       ++  +L K  ++  ++LD+ L D  GF 
Sbjct: 3   KILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKDGDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V       KI  PV  LS  S  E  VRGL  GADDYI+KPF  +EL++RI+ ++RR  G
Sbjct: 63  VCNM--AQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
           H Q++I+  ++ V+++   V+ +   I+L+  EY+++ L    +   LT++  L+ +++ 
Sbjct: 121 H-QTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNI 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D      I V+I +LR+K+ +       I+TV G GY
Sbjct: 180 AGDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGY 218


>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 236

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G +G +L +   +D +ILD  L    G 
Sbjct: 7   MRILLVDDEAELTDPLSRVLIREGYIVDAAYHGINGSQLAQIGTYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 67  EICQELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCS 126

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +V  DL ++++ +    QG  I L+ KE Q+++         L+    + 
Sbjct: 127 IEFYNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           HL+    +P   +I   I  LR+K+  A      I TV+G+GY
Sbjct: 187 HLWPNGQQPGSNVIAALIRLLRRKI-EAGNESALIRTVYGKGY 228


>gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 245

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L+   F V   D  E G+ L +  + +    I+LD+ + ++ G
Sbjct: 5   ILVVDDDPVVRELVSGYLQGRGFKV---DTLEHGMALQRQLQDERPALIVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+  
Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKIFVSHAMTVLTRAQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 182 LLEKLHGNSELHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 130/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR + 
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +   T       +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + IDV + +LR+KL+ A+  K  ++TVWG GY
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD A+   + + L+ E   V     G + ++L    + D +ILDL L  + G++
Sbjct: 3   RVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLLP--QADVVILDLMLPQLTGWQ 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+      ++++GL+ GADDY++KPF+  E+VAR+RA++RRS G
Sbjct: 61  VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRS-G 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q L V GDL +    +    +G  ++L+  E+ ++  L+       ++E  L  ++ G
Sbjct: 120 FKQEL-VFGDLILRPRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVW-G 177

Query: 182 RDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            D P V +++DV +  LRKKL   A    YIETV G GY  R
Sbjct: 178 SDFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRFR 219


>gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 246

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +LA  + + L+   ++V V   G   ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  EVLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +V GDL++N+D + V   G  I LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+   A     I T+ G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKIE--ANHPPMIHTIRGAGYVIKP 244


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A ++   L++E F   +   G D +E  +    D ++LDL L  + G E
Sbjct: 5   RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           V R L+ A+   PV +L+      D++ GL  GADDY++KPF+   LVAR+RA++R   R
Sbjct: 65  VCRRLQ-AERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R     ++  G L V+  A+ V ++G ++HLT  E++++  L+    T  ++   L  +
Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +        + +D  +  LR+KL     G   I T  G GY L
Sbjct: 184 WGWTAGAGTRTVDSHVRALRRKL-----GDEIIRTAHGVGYAL 221


>gi|254976866|ref|ZP_05273338.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094253|ref|ZP_05323731.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255316006|ref|ZP_05357589.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518663|ref|ZP_05386339.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651785|ref|ZP_05398687.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684811|ref|YP_003216096.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688469|ref|YP_003219603.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521574|ref|ZP_07407921.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210974|emb|CBA66251.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214486|emb|CBE06969.1| two-component response regulator [Clostridium difficile R20291]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  + +  ++   +  FNVY ++  +D +++ +    D IILD+ L DI G+++
Sbjct: 4   LLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVERIVLDCIILDISLPDIDGYKM 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              ++  K++ P+  LS     E+KVRG  +G DDYI+KP++ +EL  RI A +R+ +  
Sbjct: 64  CNDIK-EKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELRIYARMRQYKNI 122

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    L +N++++ V   G  I LT  E++++  L+  K    +K    N ++ 
Sbjct: 123 TSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYNQVWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D  +   + V I ++RKK+++ +    YI+TVWG+GY
Sbjct: 183 MPDIGDQHTVQVHIAQMRKKINSLSREHQYIQTVWGKGY 221


>gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 230

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  L  ++ + L++  F V     G   +E       D ++LDLGL D+ GF V
Sbjct: 7   VLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRPPDVVVLDLGLPDMDGFTV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR    S PV +LS  +   DKV+ L +GADDY++KPF  EE +AR+RA +RR    
Sbjct: 67  LAGLR-GWTSVPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRRGTAS 125

Query: 123 ---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A++ +V  G L V+L AK V   G  + LT  E+ ++ELL   +   + +   L  +
Sbjct: 126 GIPAEAPVVRAGALEVDLAAKRVTRDGEPVRLTPTEWGVLELLVRSEPNLVGQREILTAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   + V++  LR+KL        ++ T  G GY
Sbjct: 186 WGPTYVNQTNYLRVYLAALRRKLEADPSHPRHLITEAGMGY 226


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   ++  L+ E F V V   G   +   +    D IILD+ L  + G E
Sbjct: 5   RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  +   STP+ +L+      D V GL+ GADDYI KPF+  E+VAR++A +R  
Sbjct: 65  VCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAK 124

Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R         +  +V  DL V  D     V   R+ LT KE+++++LL+  +    ++E+
Sbjct: 125 RILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      + + +DV I  LR+KL  +     YIETV G GY  +E 
Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRFKER 235


>gi|255523314|ref|ZP_05390284.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188247|ref|ZP_06856639.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512968|gb|EET89238.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047373|gb|EFG86815.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 232

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKA-LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++ I DD+  + + I+  L  E F V + + G   +E     E D +ILD+ + ++ GF
Sbjct: 4   KLIYIGDDEVNICNIIKSFLVKEGFEVELFNDGLSVLEAFNTKEPDMLILDIMMPEMDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +   +R  K   P+ I+S   +  DK+ GL  G DDY++KPF+  EL+ARI++I RR  
Sbjct: 64  SLCSLIR-QKSCIPIIIVSAKDTEPDKIAGLTLGCDDYLTKPFSPMELIARIKSIFRRIE 122

Query: 119 --SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              + H +   +I  GD+SVNLD K +   G+ I LTG E+  I  L   KN  +++   
Sbjct: 123 LDKKQHIEDNKVITIGDISVNLDIKEIHYHGNNIGLTGMEFSFIYYLITNKNRAVSRSEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++   ++ E +  D  + ++RKKL N AG    I+TVWG G+ ++
Sbjct: 183 LDKVWGFENDVETRATDDMVKRIRKKLLN-AGSSLKIDTVWGFGFKIQ 229


>gi|295096184|emb|CBK85274.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 3   MRVLVVEDNALLRHHLKVQLQEMGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S PV +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 60  DGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALLR 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  +   +    I LT  EY ++E L       ++K+  +  
Sbjct: 120 RNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 180 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 222


>gi|284029587|ref|YP_003379518.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808880|gb|ADB30719.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 126/218 (57%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD AL+  + ++L++E ++ Y+   G+  +   + ++ D ++LDL L  + G +
Sbjct: 4   RILIVDDDTALSEMLSIVLRNEGYDTYLCATGDKAVPAFREFKPDLLLLDLMLPGMDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR   
Sbjct: 64  VCRAIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARLRRMDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PGPESLTIGDLTIDVAGHSVKRSGETIQLTPLEFDLLVCLASKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEIVVTVRGVGY 220


>gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
 gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
           27755]
          Length = 236

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDDK +   I+ +L++ +++V  T+ G++   L      D +ILDLGL D+ G +
Sbjct: 6   RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLITSRCPDVVILDLGLPDMDGMK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R A  + P+ ++S     +DKV  L  GADDYI+KPF   EL+ARIRA +R  RG
Sbjct: 66  ILKEVR-AWSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIRHFRG 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +++         + G L ++ D   V V+     LT  E++++ LL       LT +  
Sbjct: 125 TSKNQGERQKVTFLNGKLVIDYDKHRVYVEEQDAGLTQNEFRLLSLLGKYAGKVLTYDYM 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++    + + +I+ V +  +R+K+    G   +I T  G GY
Sbjct: 185 MKEIWGPNMKGDNRILRVNMANIRRKIEKNPGQPQFIFTEVGVGY 229


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  IE  + ++FD ++LDL L  IPG  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    IED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRTIRDTS-DVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
               A  ++  GDL +++    + V+G  + LT  E++++  L+        +    E  
Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L + ++G +    + ID  +  LR KL +      ++ TV G GY     AK +  +
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAKTDKSD 238


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  LK E ++      GE+ + L      D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + ISTP+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRQS-ISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     S+   GDL+++ D   V+     I LT +E+++++ L+ ++ T  ++E  L 
Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + ++R+KL        YI T  G GY
Sbjct: 183 KVWGYEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGY 225


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ + + + + L++ENF     +  ++ I++    E + ++LD+ +  I G E 
Sbjct: 5   ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQIDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ ++S  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR +  
Sbjct: 65  CMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQKY 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + + +I  GDL++N D + + V    + LT KE+ ++ELL+  K   L+      
Sbjct: 124 NTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIRKIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V I  LR+K+        YI+T+WG GY
Sbjct: 184 EVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGY 226


>gi|226199397|ref|ZP_03794955.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225928473|gb|EEH24502.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 11/225 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP---GF 60
           +L+EDD+ +A  +   LK++   V   D  +DG         +A  L L    +P   G 
Sbjct: 1   MLVEDDRMIAEGVRKALKADGCAV---DWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 58  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 118 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 178 WGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 217


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +        I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235


>gi|218442075|ref|YP_002380404.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174803|gb|ACK73536.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      +   L      +     GE    L    E+D +ILD  + +I G 
Sbjct: 1   MRILLVEDDLEQLEPLSFALSETGHIIDAVQDGETAQWLINEKEYDLLILDWMIPNISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++    R    ++PV +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ RRS 
Sbjct: 61  QLCTYYRYLGKTSPVLMLTAKDTTLDKVTGLDAGADDYLVKPVDLLELLARVRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DLS++L++  +E     I L+ +E+Q++E         LT+E     L++
Sbjct: 121 LWQGDSLKIEDLSLDLNSLKLERNSVTIELSVREFQLLEYFMRHPQQVLTREQIEQSLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EPE   +   I +LRK+L       ++IETV+G GY L  +AK
Sbjct: 181 WGNEPESNAVSTLIRRLRKRL-QLVEVHHWIETVYGVGYRLNPSAK 225


>gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF]
 gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE]
 gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU]
 gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056]
 gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058]
 gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059]
 gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
 gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii]
 gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2]
 gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
          Length = 254

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 202 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248


>gi|169343156|ref|ZP_02629700.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298794|gb|EDS80869.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E       +   D +EL    + D IILD  L DI GF
Sbjct: 1   MKILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            ++  ++      P+ +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI    + I 
Sbjct: 61  NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + L V GDL++ LD +   ++   I+LT KE++++  L   KN   ++E  LN
Sbjct: 120 SDSKKKVKDLTV-GDLTLFLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY L E
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F V +   G++G++     ++D IILD+ L  + GFE
Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 548 ICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     +++    ++++  A+ V V G  +  T KE+ ++       N  L+KE    
Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +V  + V I KLR+K+        ++ETVWG GY L
Sbjct: 667 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 711


>gi|83718337|ref|YP_439100.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167577524|ref|ZP_02370398.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167615672|ref|ZP_02384307.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257142209|ref|ZP_05590471.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652162|gb|ABC36226.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 219

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L  ++   ++ +     +V +L  D         +D I+LDL L D  G
Sbjct: 1   MRVLLVEDDPWLGEAVRDQIEKDGHPTDFVGNLA-DARRHVAVATYDLILLDLLLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR    + PV IL+ +  +  ++ GL +GADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LDFLRELRAGGSTVPVIILTALDQVASRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  G+LSV+  A++V   G RI LT  E+ ++E L       L+K      LY
Sbjct: 120 SGNPNPLVKLGELSVDTAARSVMRGGARIDLTASEWALLETLIQHPGMLLSKSQLEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              DE     I+V + +LRKKL     G + IETV G GY LR +
Sbjct: 180 SFSDEVGSNTIEVHVSRLRKKL-----GADLIETVRGLGYRLRRD 219


>gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 222

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+L++ED+  L H + + L+     V   D  ED  E   F +    D  ++DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLAVQLREMGHQV---DAAEDAKEADYFLQEHVPDIALVDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   I  P+ +L+     + KV  L++GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGMSLIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ GHA  +I      V+L  + + +   ++ LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGHASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKK+  A      I TV G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIL-ALYPTEVINTVRGQGY 218


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED + +   IE+ L    F+V     G+  +EL + ++ + ++LDL +    G E
Sbjct: 19  KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78

Query: 62  VLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R LR  + ST  V +L+  +   DK+ GL +GADDY++KPF+  ELVAR+  ++RR R
Sbjct: 79  VCRRLR--QFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPR 136

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   S  V G + V+LDA++VEV G+ +  T  E++++  ++       T++      
Sbjct: 137 IPAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRA 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   +DV +  LR+KL  A   +++I TV G GY
Sbjct: 197 WGEEWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGY 237


>gi|255281457|ref|ZP_05346012.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267945|gb|EET61150.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD  L   ++  LK   F V  V  +      L    ++D ++LD+ L D  GF
Sbjct: 3   RILLLEDDANLIDGLQYSLKKNGFEVDTVRSVHAAMQRLADMGKYDLLLLDVTLPDGSGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R      P+  L+      + +RGL  G DDYI+KPF   EL +RIRA++RR+ 
Sbjct: 63  EVCGYVREKNPRIPIIFLTAADEEVNIIRGLDLGGDDYITKPFKLGELCSRIRALLRRA- 121

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A+S     +V GD++V+L    V + G  + LTG EY+++ LL    N  +T+E  LN
Sbjct: 122 GIAESSGDTALVCGDITVDLLGSRVLLGGVNLELTGAEYRLLCLLVRNANRIVTRETILN 181

Query: 177 HLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+DG  D  +   + V++ +LR+K+        ++ TV G GY  RE
Sbjct: 182 ELWDGTGDYVDDNTLSVYVRRLREKVEKEPSRPQHLITVRGFGYQWRE 229


>gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
 gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
          Length = 228

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDK +A ++ L+L++E FNV       + I +     FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++ A+ + PV  L+        V GL  GADDYI KPF   EL ARIR  +R+  G
Sbjct: 63  VCTEIKQAQ-NIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKY-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H+ +     DL V+  +  V+  G  + L+  EY+++ +     N  +T++  L+ L+D 
Sbjct: 121 HSPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E      + V+I +LR+K+ N  G    I TV G GY L
Sbjct: 181 AGEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221


>gi|149923814|ref|ZP_01912205.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149815326|gb|EDM74870.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 231

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD  LA  +        +   +   G + +        D ++LDL L    GFE
Sbjct: 5   RILIAEDDVRLAQLMREAFVRRGYEALLLHGGGEVVPAVWRLRPDLLVLDLMLPGADGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR LR  + + P+ IL+      D+V GL+ GADDYI+KP     L+AR+RA++RRSR 
Sbjct: 65  ILRHLR-PRWTGPILILTARDGDFDQVSGLELGADDYIAKPVATPVLLARVRALLRRSRS 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
           G  ++ +  G+L +   A+ V  QG  + L+  EY+++  L+ R    +T+E     L  
Sbjct: 124 GPREAELELGELRITPSAREVRAQGRLLSLSDSEYELLVFLAARAGEVVTREQLFRELRG 183

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             YDG D    + +D+ + KLR +L     G+  I TV GRGY+ 
Sbjct: 184 IEYDGLD----RSMDLRVSKLRARLREQLEGRAPIRTVHGRGYLF 224


>gi|75520327|sp|Q70FH0|PMRA_PECCC RecName: Full=Transcriptional regulatory protein pmrA
 gi|37495404|emb|CAE47079.1| response regulator pmrA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 222

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALIGSAHYSLVILDLGLPDDDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    ++D+V GL  GADDY++KPF   EL AR+RA++RR++
Sbjct: 61  ALLSRWRKNNYQHPVLILTARDKVDDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    + LT KE+ ++  L L+    + +E+    +Y 
Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDEKPVVLTPKEFAILSRLVLKAGYQVHRELLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRQKI-----GKDRIRTLRGFGYLL 216


>gi|29826613|ref|NP_821247.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29603709|dbj|BAC67782.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 248

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 133/222 (59%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ LA ++ L L +E + V V   G +G+   +  ++  ++LDL L  + G+
Sbjct: 1   MRILVVEDERELAQTLRLGLTAEGYRVDVAHDGREGLWKARTGDYAVVVLDLMLPLLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR   I+TPV +L+      D+   L +GADDY++KPF    LVAR+RA++RR+R
Sbjct: 61  RVCAQLRREGITTPVLVLTAKDGDWDQAEALDTGADDYVTKPFTYLVLVARLRALMRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  GDL +++ A+T    G  + LT +E+ + E+L+ R    +TK   L+H + 
Sbjct: 121 GAASPLLAVGDLVLDVAARTCLRSGVAVPLTPREFAVAEVLARRPGEAVTKSEILHHAWP 180

Query: 181 GRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E + +++V +  LR+K+  A G ++ + TV G GY L
Sbjct: 181 --DEAEDLNLVEVRVSALRRKIDTAFGRQSLL-TVRGVGYRL 219


>gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 228

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+  A  +   L  E F V      ED  +      +  IILD  L    G 
Sbjct: 1   MRILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                LR  +I TPV +L+   ++ D+VRGL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TFCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++  ++ V   G  + LT KEY ++ELL  R    +++      ++ 
Sbjct: 121 QARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWR 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +IDV I  LR+K+ +  G    I TV G G+ L
Sbjct: 181 TGLIALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSL 220


>gi|239815987|ref|YP_002944897.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802564|gb|ACS19631.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 226

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD ++  +++  L     +V +   G   +E  +  E D + LDL L ++ G 
Sbjct: 1   MKLLLVEDDPSMQVTLQRALARSRIDVRICGDGALAVEQWRALEPDVVALDLSLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R A + TPV +L+   ++ D++ GL +GADDY+ KPF+ +EL ARIRA+ RR +
Sbjct: 61  QVLAQARAAGLRTPVLLLTARGTVGDRIMGLNAGADDYLPKPFDLDELEARIRALRRRHQ 120

Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++     G L  + ++  +  +   + LT +E  +++ L ++    ++KE    
Sbjct: 121 NAGADAVLNPQEVGGLRFDPESGAIYHRAGILELTPRELALLKALMMKPGHAVSKERLFE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G  + + + I+V + +LRKKL   AG    + T+ G GY+LR
Sbjct: 181 LVFPGETDVQYEAIEVVVYRLRKKL---AGTGAALMTLRGLGYLLR 223


>gi|146306491|ref|YP_001186956.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574692|gb|ABP84224.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 223

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   LA S+   LK   + V V   G          ++   ILD+GL  + GF
Sbjct: 1   MRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV +L+    ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  AVLARLRDRGQRLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L   GDL  +L A+   ++G  + LT +E  ++E +  R    ++KE     ++ 
Sbjct: 121 LGGEQLQRCGDLVYDLGARRFSMKGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEDASPDAIEIYIHRLRKKLE---GSGVRIVTFRGLGYLL 218


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + + L+ E F V     G   +E  K  E       FD IILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSR-GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R      L V    +V L+ +   V V+   + L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 200 EQLLDQVWGPEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGY 247


>gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 824

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L+IE+D A AH I+  L  + + V V   GE G    + + +D ++++  L  + G 
Sbjct: 1   MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    S P+ +L+  +S  D V  L++G DD++ KPF+  EL ARIRA++R  R
Sbjct: 61  DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+    L ++  ++ V  Q H + L+ KEY ++EL        LT+   L HL+ 
Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              +P    +   I +LR+KL      K  IETV+G GY L+  ++ ++
Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADK-IIETVYGVGYRLKPLSQSQS 228



 Score = 45.8 bits (107), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD    + +  +L S    V   D      E  +    + +ILDL +    G E
Sbjct: 529 QILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVE 588

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R  +   + P+  LS     +      Q+GADDYISKPF + EL+ RI
Sbjct: 589 LCQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRI 641


>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  ++++I+  L    F V       D  ++    +   IILDL L D+ G E+
Sbjct: 5   ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLMLPDMFGSEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR   +  P+ +LS ++   +KV  L  GADDY++KPF  +EL+ARIR+++RR  G 
Sbjct: 65  LKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKNGF 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  G   V+ +   +  QG+ ++LT  EY+++  L      T ++E  ++ ++   
Sbjct: 125 GL-VVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGEE 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +++DV+I +LR+K+         ++T  G GYVL
Sbjct: 184 YFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVL 222


>gi|319763004|ref|YP_004126941.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330825084|ref|YP_004388387.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317117565|gb|ADV00054.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310456|gb|AEB84871.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 224

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL+ ++   L+++ F V                ++ A++LDL L D  G 
Sbjct: 1   MRVLLVEDDAALSEAVCGYLRAKAFVVDAVPSLAQASAALHAAQYAAVLLDLHLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  K    V +L+    + D++ GL +GADDY+ KP++  EL+AR+RA+ RR  
Sbjct: 61  GLLPQVRSLKQRPIVIVLTARDQVSDRIHGLDAGADDYLVKPYDPGELLARLRAVERRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++L  + V   G  I LT KE+ ++ +++       T+E   + LY 
Sbjct: 121 AAHVPVLALGDLQIDLSREQVRRAGVPIALTQKEWALLRVMATHPERLHTRESLQDALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE +   ++VF+ +LR+KL     G+ +IET+ G GY L
Sbjct: 181 FDDETDSNTLEVFVSRLRRKL-----GREHIETLRGLGYRL 216


>gi|152965772|ref|YP_001361556.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151360289|gb|ABS03292.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++   L +E   V +   G  G    + + +D ++LDL L    G+
Sbjct: 1   MRVLLVEDEVLLADTVRRGLAAEGVEVDLAHDGPTGYRRAREHAYDVLVLDLMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A + TPV +L+      D+V     GADDY++KPF+   L+AR+RA+ RR  
Sbjct: 61  EVCRDLRAAGVWTPVLVLTAKDGEYDQVDAFDLGADDYLTKPFSFPVLLARLRALHRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++   + V      + LT +E+ ++E L  R++  + K   L  ++D
Sbjct: 121 PERPVVLRAGDLVLDPATRRVHRGETPLTLTAREFALLEFLLRRRDEVVPKAEILRAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  +++V++  LR+K+ +A   ++ ++TV G GY L
Sbjct: 181 PEVSTDPNVVEVYVGYLRRKV-DAPFARHALQTVRGAGYRL 220


>gi|251797185|ref|YP_003011916.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544811|gb|ACT01830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 219

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 129/219 (58%), Gaps = 7/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IEDD+A++  I+L L+   +       G++   +   +  D  +LD+ L D+ G+E+
Sbjct: 4   IIIIEDDRAISDLIKLNLELAGYVCRQAYSGQEAQSILPDFSPDLALLDISLPDMEGYEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R  ++  PV  L+  +++ DKV+GL+ GADDYI KPF   EL+ARI A++RR  G 
Sbjct: 64  LE--RFKRMEVPVIFLTARNALVDKVKGLKMGADDYIVKPFEAMELLARIEAVLRRY-GR 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G L ++L+ + V+ +G  I LT KEY+++ LL   +N  L++E  L  ++D  
Sbjct: 121 KSDRLNFGGLEIHLEERIVKKEGVIIELTMKEYELLLLLINNRNKALSREKILELVWDYE 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +D+ I K+RKKL    G ++ I+TV+  GY L
Sbjct: 181 YSGETRTVDIHIQKIRKKL----GWEDLIKTVYKFGYRL 215


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  122 bits (305), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ AL   + L L+ E F+V     G   + + +  + D ++LDL + ++ G+E 
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           LRA   AK S TPV +L+      DK+ GL+ GADDY++KPFN  EL+ARIRA++RR++ 
Sbjct: 64  LRAF--AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   D+ ++   +TV V G  + LT  E+ ++  L        ++   L+ + 
Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  LR K+        YIETV+G GY
Sbjct: 182 GDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGY 221


>gi|323693830|ref|ZP_08108022.1| response regulator receiver protein [Clostridium symbiosum
           WAL-14673]
 gi|323502133|gb|EGB18003.1| response regulator receiver protein [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+ L  +I++ L    ++  +   G DG        +D +I+D  L ++ G 
Sbjct: 1   MKILLIEDDEVLCKTIQMSLTKAGYDTEICHTGTDGFLYACSGAYDCLIIDRMLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ALR  KI TP    + +  + D++ GL +GADDYI+KP+  EEL+ARIRA+ RR  
Sbjct: 61  TLLQALRRRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRLG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  +   DL    + + +  Q   + L+ KE  ++E        TL +E+ L +++
Sbjct: 121 RIEEECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +D +I  LR++L         I TV G GY L
Sbjct: 181 GASSEVEDGNLDNYIYFLRRRLRTLNAPVK-ITTVHGVGYRL 221


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E ++V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|26990087|ref|NP_745512.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985016|gb|AAN68976.1|AE016529_7 DNA-binding response regulator CpxR [Pseudomonas putida KT2440]
          Length = 233

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 24/235 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   + L L  E F     D GE+G  L     F  ++LD+ L  I G EV
Sbjct: 4   VLLVDDDRELTEMLSLYLAREGFQATAADTGEEGETLALSGHFQVVVLDVMLPGISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR    
Sbjct: 64  LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPY 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE- 172
                S       + +G L +    +        + LTG E+ ++E L+ +    ++K+ 
Sbjct: 123 LMGETSAPEVPEQVRSGALKMWPGRREARWGAATLELTGSEFSLLEALARQAGQLVSKQD 182

Query: 173 MFLNHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LN L      YD R       IDV +  +R+KL   A G ++I++V G GY+L
Sbjct: 183 LSLNALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 230


>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + +++ L  EN++V   + G+D I+L +    D I+LDL L D+ GF
Sbjct: 1   MKILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    + +I  G + + +  + V +    ++ T  E++++ L+        T+E 
Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++        + +D+ I ++RKKL N       I+T++G GY
Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKLLNHEEA---IKTIYGVGY 223


>gi|288573784|ref|ZP_06392141.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569525|gb|EFC91082.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 222

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           +RIL++EDD  +   I+  L    + V +V D+ E          F  +ILDLGL D  G
Sbjct: 3   IRILIVEDDGMIGEEIQEGLSRRGYTVDWVRDM-ESAATALDLENFSMMILDLGLPDGSG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ +R      PV IL+   ++ +++ GL +GADDY+ KPF  EEL ARIRA+ RR 
Sbjct: 62  LELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG +   I   DL ++   K V   G  + L+  EY ++          L++E     LY
Sbjct: 122 RGDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERLEASLY 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E   I V I  LR+KL     G + ++ V G GY++
Sbjct: 182 GWEKDVESNAIQVHIHNLREKL-----GTDIVKNVRGFGYLM 218


>gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
           BAA-613]
          Length = 219

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 128/221 (57%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+K +   I+L L +  ++      G + + L +   FD I+LD+ L  + G+
Sbjct: 2   IKVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQFFDLILLDIMLPGVDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R   I  PV  ++    ++D+V+GL+ GADDY+ KPF+  ELVAR+ A++RR  
Sbjct: 62  DIMSYIRPMDI--PVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLRRY- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+  GD++V+++A+ V   G  + LT KE+ ++ L    KN  L +E     +++
Sbjct: 119 NKTERLLTAGDVTVDVEARRVTRAGRNVELTNKEFGLLVLFIQNKNVALFRETLYEKVWE 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    + + +D+ + +LR+KL    G +N +  V+  GY L
Sbjct: 179 GEYSGDSRTLDLHVQRLRRKL----GWENNLVAVYKVGYRL 215


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 127/219 (57%), Gaps = 7/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+ EN+ V   + GE+ +++   +E D IILD+ + D+ GF  
Sbjct: 7   VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  K   P+ +L+  S   DKVRGL+ GADDY+ KPF+ +EL+AR+ A++RRS   
Sbjct: 67  CKKIR-EKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSNQA 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++   +++V   A+ V V G RI+L  +EY ++  L   +    ++E   + ++ G 
Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIW-GL 184

Query: 183 D--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  +   + +D  +  LR KL + AG K  I+TVWG GY
Sbjct: 185 DTEKGSYRTVDTHVKTLRFKLKD-AGAK--IKTVWGIGY 220


>gi|15896909|ref|NP_350258.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           acetobutylicum ATCC 824]
 gi|15026780|gb|AAK81598.1|AE007863_1 KDP operon transcriptional regulatory protein KdpE (CheY-like
           receiver domain and HTH-type DNA-binding domain)
           [Clostridium acetobutylicum ATCC 824]
 gi|1747435|gb|AAB39096.1| KdpE [Clostridium acetobutylicum ATCC 824]
 gi|325511085|gb|ADZ22721.1| KDP operon transcriptional regulatory protein KdpE (CheY-like
           receiver domain and HTH-type DNA-binding domain)
           [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK + + I   L ++ +    TD G + I L      D I+LDLGL DI G EV
Sbjct: 7   ILVVEDDKPIRNFITTALSTQGYKYSETDKGNEAIALSMANSPDLIVLDLGLPDIDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
           +  +R      P+ I+S   +   KV  L  GADDYI+KPF   EL+ARIR  +R     
Sbjct: 67  IGKIREWS-KVPIIIVSARENERQKVEALDKGADDYITKPFGIGELLARIRVSLRHVNAG 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +++  +       +LSV+ + + V V G  +HLT  EY+++ LL       LT    +N 
Sbjct: 126 KAKDKSIDFFKVKNLSVDFEKRRVSVNGKEVHLTPIEYKIMFLLCKYSGRVLTHNFIINE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + + VF+  LR+K+        YI T  G GY L
Sbjct: 186 IWGASVGNENQSLRVFMANLRRKIEKDPAQPEYIYTEVGVGYRL 229


>gi|83955132|ref|ZP_00963788.1| two-component transcriptional regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840461|gb|EAP79634.1| two-component transcriptional regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 232

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +RA+R A    PV +L    + +D    L  GADD I  P    E+++R  +I+RR  
Sbjct: 60  EYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVLSRTNSIIRRHY 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   ++ G+L+   D +   V G RI L+ +EY + + L+L  N  ++K+   + +Y 
Sbjct: 120 GHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVISKDAIYDAIYG 179

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
              D+P  K+IDV+ICKLRKKL++A+  G  YIETV GRGY L
Sbjct: 180 SSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 222


>gi|332186432|ref|ZP_08388176.1| response regulator [Sphingomonas sp. S17]
 gi|332013415|gb|EGI55476.1| response regulator [Sphingomonas sp. S17]
          Length = 236

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 124/220 (56%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD A A +I   LK     V     G+ G+EL     FDAI LD  L  + G  +
Sbjct: 16  ILVIEDDGATAAAIIAELKQHGHEVTHASDGDAGLELATREAFDAITLDRMLPGLDGLSL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR   I+ PV +LS +S +++++ GL++G DDY++KPF+  E+  R+  ++RR R  
Sbjct: 76  VARLRERHITIPVLMLSALSDVDERIAGLRAGGDDYLTKPFDFAEMAMRVEVLLRR-REQ 134

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+++++  G +  +L  +TV+V G  + L   E++++E L   +   +T+ +    ++  
Sbjct: 135 AEAVVLRGGGIECDLVRRTVKVDGEPVRLLHMEFRLLEFLMRNQGEVMTRRIIFERVWGY 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +I V I +LRKK+ +     + I+TV G GY+ 
Sbjct: 195 YFDPGANLISVHIARLRKKI-DRPDRSSPIQTVKGEGYLF 233


>gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
 gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein
           [Oxalobacter formigenes HOxBLS]
          Length = 223

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ + +++   L+++      TD G   + L     FD IILD+ L  + G +
Sbjct: 3   KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR     TPV  LS   +++D+++GL +GADDY+ KPF+  EL  RI AI+RR + 
Sbjct: 63  LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRRVKR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  L+   D+ +NLD  TV      + L    +++++LL L+  + +++E   N L+ G
Sbjct: 123 PAFHLLQVADIVMNLDELTVTRADVPVRLNPMMFKILKLLMLKSPSVVSREEMENELW-G 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D P+   +   I  LR  + +   G + ++TV G G+ LRE 
Sbjct: 182 DDRPDSDSLRTHIHNLRAVI-DGPFGTSLLKTVSGFGWTLRET 223


>gi|218680536|ref|ZP_03528433.1| two component transcriptional regulator [Rhizobium etli CIAT 894]
          Length = 228

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  L  S++  L+   + V     G+ G+E  +  +F A++LD+ L  + G 
Sbjct: 11  VRILLVEDDSILGSSLKKALEKHAYGVDWMRDGQSGLEATEHSDFAALVLDINLPLLSGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R    + P+ +L+ + ++  KV GL  GADDY+ KPF+ +EL+AR+RA++RR  
Sbjct: 71  EVLKGIRRKGNTVPILLLTALDNVRRKVEGLDEGADDYLVKPFDLDELLARLRALIRRRD 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +SL+  GD+ V+  A        ++H T KE+ +++LL  R    +TK      LYD
Sbjct: 131 GRTESLLRCGDVEVDPSAMVARKGNIQVHTTAKEFHLLKLLMERSGRYVTKNDIEYALYD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   I+V I  LRKKL     G  +I+++ G GY++
Sbjct: 191 AYSSVESNAIEVTIYNLRKKL-----GTEFIKSIRGIGYMI 226


>gi|187934305|ref|YP_001885328.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187722458|gb|ACD23679.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K++ + I L L+ E +   ++  GED I   +  + + +ILDL L DI G 
Sbjct: 1   MKILVVDDEKSIVNLIRLNLEVEGYEPIISMTGEDAIHKFETEKPELVILDLMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V++  +      PV +L+  S I DK+ GLQ GADDYI KPFN  EL+ RI+A+ +R  
Sbjct: 61  DVIKRFQKIDSEVPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     + I    L +  D + V ++   I +T KE+  + L+    N   T+E  L 
Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D+ I ++RKK+   +   N ++TV+G GY L
Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222


>gi|83944168|ref|ZP_00956624.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36]
 gi|83845035|gb|EAP82916.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36]
          Length = 234

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/163 (39%), Positives = 96/163 (58%), Gaps = 2/163 (1%)

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +RA+R A    PV +L    + +D    L  GADD I  P    E+++R  +I+RR  
Sbjct: 62  EYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVLSRTNSIIRRHY 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   ++ G+L+   D +   V G RI L+ +EY + + L+L  N  ++K+   + +Y 
Sbjct: 122 GHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVISKDAIYDAIYG 181

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
              D+P  K+IDV+ICKLRKKL++A+  G  YIETV GRGY L
Sbjct: 182 SSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 224


>gi|330504045|ref|YP_004380914.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918331|gb|AEB59162.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 236

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL +EDD  LA  ++  L    F+V ++  G +G++L +  +FD I++D+ L    G E
Sbjct: 10  RILAVEDDPLLARHLQSHLVGCGFDVTLSHDGSEGLQLAESEDFDLILMDILLPGTNGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L+ LR  + S PV ++S +   ++++ G   GADDY+ KPF+  EL  R+ AI+RR   
Sbjct: 70  ALQRLRRQR-SVPVLLMSALGDEQNRIAGFSQGADDYLPKPFSLGELSVRVEAILRRVAY 128

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   Q+      L  +     V  +G+ I LT  EY+++ELL   K+  L+K       
Sbjct: 129 ERREPQASAEGNGLQFDEGRSDVAFRGNWIGLTPSEYRVLELLWRHKDEALSKPFLYQQA 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +D+ +  +R+KL         ++TVWG+GYVL
Sbjct: 189 LRRAYAQHDRSLDMHVSHIRRKLQAVGHEATRVDTVWGKGYVL 231


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ + +   Y+ D +ILD+ +    G EV
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKRNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RRS   
Sbjct: 66  CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I    + ++    TV+V G  I LT  E+ ++ LL+       + E    
Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       K + V I  LR+KL     G+  I TVWG GY
Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   + +  D ++LDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  VARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H + +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 122 HGE-VISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +   G   I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220


>gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101]
 gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +++D  L ++ G 
Sbjct: 1   MKLLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRMLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A  +TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+      +  I TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-DRELIHTVRGAGY 219


>gi|188589555|ref|YP_001920458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499836|gb|ACD52972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 226

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K++ + I L L+ E +   ++  GED I   +  + + +ILDL L DI G 
Sbjct: 1   MKILVVDDEKSIVNLIRLNLEVEGYEPIISMTGEDAIHKFETEKPELVILDLMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V++  +      PV +L+  S I DK+ GLQ GADDYI KPFN  EL+ RI+A+ +R  
Sbjct: 61  DVIKRFQKIDSEVPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     + I    L +  D + V ++   I +T KE+  + L+    N   T+E  L 
Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D+ I ++RKK+   +   N ++TV+G GY L
Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  ++  L  E F V     G++ ++       D I+LDL L    G E
Sbjct: 42  KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTDGIE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR R 
Sbjct: 102 ICRKVR-EKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160

Query: 122 HAQSLIVTGDL----SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H +S    GD     S+ +D  +  V  H+  + LT +E++++  ++   N  LT+E  L
Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV I +LR+K+        YI T  G GY +R+   D
Sbjct: 221 QSVWGYDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGYTMRDPGTD 272


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ +A  +   L+ E + V     G   +EL +    D ++LD+ L  + G E
Sbjct: 3   KVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+      DKV GL SGADDY++KPF  EEL+AR+RA++RR+  
Sbjct: 63  VLRRIRKTS-SVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEV 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S++    + ++  A  V V      L+  EY +++     KNT L+++  +  ++  
Sbjct: 122 RGTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
               +   +DV++  LR K+     G+ YI TV G GYV+R +  DE+
Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKT-GEEYISTVRGVGYVMR-DGNDES 227


>gi|222147648|ref|YP_002548605.1| two component response regulator [Agrobacterium vitis S4]
 gi|221734636|gb|ACM35599.1| two component response regulator [Agrobacterium vitis S4]
          Length = 225

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++LIEDD+  A  I   LK   + V     G  G+E  +    D +I+D  L  + G  
Sbjct: 3   KVILIEDDEDTAQDICAELKDYGYAVDWESDGARGLERARNGGADILIVDRMLPGMDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR  ++ TPV ++S +S++ D+VRGL++G DDY++KPF   ELVAR+ A++RR   
Sbjct: 63  VIDTLRREQVRTPVLVISALSAVNDRVRGLRAGGDDYLTKPFAILELVARVEALLRRPAD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++  G L ++L  ++       I L  +E++++E +       LT+ M    ++  
Sbjct: 123 MSAKVLRVGPLELDLLERSACRGEREIELLPREFKLLEYMMRHCEQLLTRGMLFEEVWKY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  P+  +IDV + +LR+K+ +  G    I  V G G+VLR
Sbjct: 183 KFVPDSNLIDVHMGRLRRKIDH-PGDHPMISNVRGEGFVLR 222


>gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 684

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +   L S+++ V     GE+G    + Y +D I+LDL L  + G 
Sbjct: 1   MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R LR +   TPV +L+   +   KV GL +GADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                L+   +L   LD  T EV   G  +HLT KEY ++EL     +   +    ++ L
Sbjct: 121 SALPPLLEWNNL--RLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + P    +   I  LR+KL  A   ++ I+TV+G GY L+
Sbjct: 179 WSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222



 Score = 48.9 bits (115), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +  +++ +L +    VY     +  +E     E + +IL + +    G E
Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + +  R        P+  L+       + +   +GADDYISKP  + EL+ RI
Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRI 508


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E ++V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235


>gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA ++   L +E F V V   G  G+ + +  ++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR     TP+ +L+      D+  GL +GADDY++KPF+   L ARIRA++RR  
Sbjct: 61  RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL+V+  A+ VE  G  + LT KE+ ++E L+L     ++K   L H++D
Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  I++V++  LR+KL +   G+  I TV G GY L  + 
Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-DLPFGRRSITTVRGAGYRLEADG 224


>gi|296444506|ref|ZP_06886471.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296258153|gb|EFH05215.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 225

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+  +A  I  ++    F +  V  LG D +   +   +D ++LD  L D  G
Sbjct: 1   MRILLIEDESEMARLIASLVAHAGFVIDRVGTLG-DALASLRVNAYDLLLLDRRLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R A+    V +++ +  + +K+ GL++GADDY++KPF   EL+ARIRA +RR 
Sbjct: 60  ISLLPEVRAAQPGIRVMMITALDGLTEKISGLEAGADDYLTKPFQGAELIARIRACLRRP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     I  G ++ +LD+  V V G  I LT +E  ++  L  R +    +E  +  +Y
Sbjct: 120 GGDVLPPIRVGAVAFDLDSNEVTVAGRTIILTRREMMLLRSLMQRASRVAARETLIQEIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +E +   +D  + +LRK+L+ A G +  I TV GRGY+L E A+
Sbjct: 180 GVDEEVQANALDSIVSRLRKQLA-AYGARIEIHTVKGRGYLLTEQAR 225


>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 118/218 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++++   +++ L+  N  V     GE+G++L         +LD+ L  I GF+
Sbjct: 3   KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+      DK+ GL+ GADDYI KPFN  E+V RI+A++RR   
Sbjct: 63  VCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLGD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G   ++L ++ V      I +T KEY ++++     N   T++  L+ ++  
Sbjct: 123 EDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWGE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + KIIDV I +LR K+ + A    YIET+WG GY
Sbjct: 183 NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGY 220


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++    +  L+   F+V + + G  G+   K  EFD +ILD+ L  I GFE
Sbjct: 3   RILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR+ A + +   
Sbjct: 63  ILKRVRDVK-DIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    ++  + G L +  +++ V V G  +++  KEY+++  +    N    +E
Sbjct: 122 LKSKYGNENPNETFTIRG-LEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V I ++R+K+        Y+ETVWG GY  R
Sbjct: 181 ELFERIWGFDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRFR 230


>gi|227326776|ref|ZP_03830800.1| DNA-binding transcriptional regulator BasR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
 gi|301069186|dbj|BAJ11972.1| response regulator PmrA [Pectobacterium carotovorum subsp.
           carotovorum]
          Length = 222

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L   + L L  E +        ++   L     +  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDKLLQEGLLLALSHEGYACDCAGTAKEADALISSAHYSLVILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+    + D+V GL  GADDY++KPF   EL AR+RA++RR++
Sbjct: 61  TLLSRWRKNHYQHPVLILTARDKVNDRVSGLDVGADDYLAKPFALTELQARVRALIRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    + LT KE+ ++  L L+  + + +E+    +Y 
Sbjct: 121 GSSNSKIQVDNITLDLNNQQVLLDDKPVVLTPKEFAILSRLVLKAGSQVHREVLHQDIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR K+     GK+ I T+ G GY+L
Sbjct: 181 WNDDPSSNSLEVHIHNLRHKI-----GKDRIRTLRGFGYLL 216


>gi|328944343|ref|ZP_08241807.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491262|gb|EGF23037.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 234

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K LA +I  +L   +++      G+ G+  C+   +DA I+D  L  + G 
Sbjct: 12  MNILVIEDEKNLADAIVRILTDAHYHAEAVYDGKSGLISCQSGLYDAAIVDRMLPGMDGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R +  S P+ IL+  +S +DKV GL +GADDY++KPF   EL+AR+RA+ RR  
Sbjct: 72  DIVKEVRRSGDSMPILILTARTSTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQG 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D S++L    +  + H +HL+GKE++++++L    +  ++K+  L +++ 
Sbjct: 132 DVIIEQMKFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++ ++  LRKKL+     K  I T+   GY L
Sbjct: 192 TTADASENSVEAYVSFLRKKLAY-VHSKVQITTLRMLGYRL 231


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E + VY    GE+ +E  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR--- 119

Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           H Q+            I  G L ++ DA  V  +G  I LT +E++++  L+      +T
Sbjct: 120 HQQTPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 180 REHLLETVWGYDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYLR 231


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ + + I++ L  E F V   D G   ++  K   FD ++LD+ L    G  
Sbjct: 3   KLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDGLS 62

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + + +R  KIS  P+ +L+      D++ GL+ GADDYI KPF+  ELVARI AI+RR  
Sbjct: 63  LCKEIR--KISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVA 120

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +++   +L++N D +TVEV+G  I LT KE+ ++  ++       ++E  
Sbjct: 121 AQPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L +++      +++ +D  I +LR KL N  G K  I TVWG GY
Sbjct: 181 LENVWGYDFYGDLRTVDTHINRLRDKL-NMEGTKQAITTVWGVGY 224


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 17/240 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+ A+   + + L+   + V   + GE+ + L    + D ++LD+ L  + GF V
Sbjct: 25  VMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGFAV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 85  CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV---LRENAK 226
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY    + ENA 
Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGENAP 263


>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I + L    F +     G D IE+      D I+LDL L DI G E
Sbjct: 5   KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R+ +    TP+ +L+  S   DKV GL  GADDYI+KPF   EL AR+R ++RR 
Sbjct: 65  VCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRRV 124

Query: 120 RGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                +         +I   D++++++   V+ Q   I  T  E+++++ L+      L+
Sbjct: 125 MDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + + L  +   +  P+++I+DV I  +RKKLS+      YIET+ G GY ++
Sbjct: 185 RSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR    
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++       K + V I  LR KL      + +I TVWG GY
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGY 227


>gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
          Length = 218

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+ A+   +   L+   + VY    G++  ++ +  EFD  +LD+ L +I G+
Sbjct: 1   MKILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R  +   PV  L+    I D+V GL+SGA+DYI+KPF+ EEL+AR+  ++RR+ 
Sbjct: 61  EVFAYMR--EYDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  L+    + +N   + V  +   + LT KEY+++  L   K   L +E     ++
Sbjct: 119 KSSSNKLLKWKYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKAIILPREKIYQKIW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +EP  + +D+ I ++R KL         + T++G GY+L
Sbjct: 179 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 216


>gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
 gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
          Length = 244

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K L   I+  L    F V     G DG       +F  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  S+I   DL +++  +TV      I LT KE+ +++    R+   L + +  + +
Sbjct: 121 QSDYKSSVIHIADLKMDIAKRTVYRGNTNIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKIDDGFDTK-LIHTVRGMGYRL 222


>gi|209515806|ref|ZP_03264669.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503833|gb|EEA03826.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 228

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV IL+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYLLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL N    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223


>gi|329116852|ref|ZP_08245569.1| putative sensory transduction protein RegX3 [Streptococcus
           parauberis NCFD 2020]
 gi|326907257|gb|EGE54171.1| putative sensory transduction protein RegX3 [Streptococcus
           parauberis NCFD 2020]
          Length = 220

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED++ +A+ ++  L+ EN+ V   + GE  I L + Y    IILD+ L ++ GF
Sbjct: 2   LDILIVEDNQEIANILQEFLRKENYTVATAESGEKAITLYQKYGAKLIILDIMLPEMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R +  +  + I S  +   D ++GL  GADDYI KP++ + L+A+I  I +R  
Sbjct: 62  QVCSKIRESS-NAHILIASAKNQKADNLKGLYLGADDYIGKPYDIDILLAKINGIFKRK- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q   + G L +N   +T+ V  H+++LT KE+++++LL   +  TL K+     ++ 
Sbjct: 120 -YNQEEFILGGLKLNTIMRTLTVNDHQVNLTEKEFELLKLLMENRGVTLKKDYLFTTIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E++ + V I  LR+K+        +I TVWG GY
Sbjct: 179 SDSLSELQTLAVHIRWLREKIEKDPKNPEHIVTVWGIGY 217


>gi|170757250|ref|YP_001780246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122462|gb|ACA46298.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 227

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+ ++   +   L+++ + V    L +D  +   F+  D ++LD+ L D  GF
Sbjct: 3   FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +      + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+T +G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTAFGIGYVMR 227


>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 254

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 19/238 (7%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+  +A ++   L++E + V     G  G+ELC+    D ++LD+ L    G EV 
Sbjct: 21  VVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVC 80

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----- 118
           R ++ A+   PV +L+      DK+ GL  GADDY++KPF+  ELVAR+  +VRR     
Sbjct: 81  RRVQAAR-PVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERAR 139

Query: 119 -------SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                      A    V+ G+L ++   + V   G  +HLT  E+ ++  L+    T LT
Sbjct: 140 ALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLT 199

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +E  L  ++D  D    + +D  +  LR+KL     G + + TV G GY        E
Sbjct: 200 REKLLEEVWDWADASGTRTVDSHVKALRRKL-----GADLVRTVHGVGYAFEPGGVQE 252


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 131/224 (58%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +A  +EL L+ E + V     GE+G+E     +FD ++LD+ L  + G E
Sbjct: 5   QVLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+      DKV GL  GA DYI+KPF  EEL+AR+R ++RR++ 
Sbjct: 65  ICRRVR-KESEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKR 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   S++   +L +N + + V V    + LT KEY ++  L   K   L++E  +  ++
Sbjct: 124 DAGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVW 183

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G D P +  I+DV+I  LR K+ +    + YIETV G GYV++
Sbjct: 184 -GYDYPGDTNIVDVYIRYLRSKIDDEC-KETYIETVRGVGYVIK 225


>gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  +      E +   + + G   +      E DA ILD+ L D+ GF
Sbjct: 1   MRLLIVEDEGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   LR +    PV +L+   S+ D+V+GL +GADDY+ KPF+  EL AR+RA+ RR+ 
Sbjct: 61  ELCARLRQSGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRA- 119

Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  + + V    G L ++  ++ V      ++L+  E+ ++ELL   ++  LT+   L+ 
Sbjct: 120 GIGRDVAVRLQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  R      ++D ++  LR K+     G++ IETV G GY LR
Sbjct: 180 VWGYRYPVTSNVVDQYVRYLRHKV-----GQDLIETVRGVGYRLR 219


>gi|167724100|ref|ZP_02407336.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
          Length = 219

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   ++ +                     +D I+LDL L D  G 
Sbjct: 1   MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 61  DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  G+L+V++ A++V   G R+ LT  E+ ++E L       L+K      LY 
Sbjct: 121 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I+V++ +LRKKL     G   IETV G GY LR +
Sbjct: 181 FSDEVGSNTIEVYVSRLRKKL-----GAELIETVRGLGYRLRRD 219


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 130/237 (54%), Gaps = 13/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L    + + V   G + +E  +  + D I+LD+ +  + G +
Sbjct: 6   KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR      P+ +L+ +  + D+++GL+ GADDY+ KPF+ +EL +RI+AI+RR+  
Sbjct: 66  VCQTLR-ESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124

Query: 120 ------RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  GHA  Q ++  G L +    + V + G RI LTG E+ +++LL  +   T+++
Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  +  Y      +++++DV + +LR K+ +++    YI T WG GY  ++  K
Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFFQKMRK 241


>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 227

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + +L+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G         I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  D   +P  KI+DV I +LR K+   +    YIETVWG GY
Sbjct: 181 LVWGIDFFGDP--KIVDVNIRRLRSKIEENSSKPKYIETVWGTGY 223


>gi|229815822|ref|ZP_04446146.1| hypothetical protein COLINT_02870 [Collinsella intestinalis DSM
           13280]
 gi|229808517|gb|EEP44295.1| hypothetical protein COLINT_02870 [Collinsella intestinalis DSM
           13280]
          Length = 245

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED   LA ++  +L+   +   V  +G DG+ +     +D ++LD+ L D+ G 
Sbjct: 16  MRVLLIEDTPRLAEAVAEILRKSGYGADVAHIGADGLAMALTGAYDVLLLDIMLPDMSGM 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR A    PV +L+    + D+V GL +GADDY+ KPF+  EL+ARIRA+ RR  
Sbjct: 76  DVLRKLREAGSVVPVILLTARQGVGDRVAGLDAGADDYLPKPFHASELLARIRAVTRRPA 135

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + I    L ++++  +V+ +G    + LT KE  ++E    R  + ++K      
Sbjct: 136 TYRPNNAIEACGLVLDVEKLSVQARGGAVAVELTPKEALLLEAFMGRSGSPVSKSDLAVR 195

Query: 178 LYDGRDEPEVKIID----VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+     P V ++D    V +  LR KL         IETV G GY L
Sbjct: 196 LWG----PHVSLVDNRIEVLVHALRGKLEKLE-SPARIETVRGVGYRL 238


>gi|206970362|ref|ZP_03231315.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734939|gb|EDZ52108.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 220

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 9/224 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGFEV 62
           +I+++++ A  I   L  E    ++  L  +  +L   YE  +D IILD     I G E+
Sbjct: 1   MIKNERSSAKKIVSGLTQEGH--FILKLHNENQDLNIAYEQDWDIIILDWDSLSISGPEI 58

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K +TP+ I++   S ED + GLQ+GADDYI KPF KEELVAR++AI+RRS  +
Sbjct: 59  CRQIRLVK-TTPIIIVTNNISSEDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDYN 117

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     DL V+  +  V+  G  + LT +EY ++  L   KNT L++EM LN ++
Sbjct: 118 QQNETNFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++D++I  +RKKL      + YI+T+ GRGY + E
Sbjct: 178 GYDVVVNPNVVDLYIGYVRKKLKCEKKDR-YIQTIHGRGYSMVE 220


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E + V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDGTT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         +  GD+ + +    V V+G  +    KE++++E L   K   LT+   
Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++ ++      + K +DV + ++R K+        Y+ TV G GY + E A
Sbjct: 182 IDRIWGADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDEPA 232


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ EN++V   + GE  ++    Y++D I+LDL +  + G E
Sbjct: 6   RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCEKIRKQK-ATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A        + ++V   L+++ DA  V      I LT KEY+++  L+   +    +E 
Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  +++     +++ +D  + +LR+KL+  +    N I TVWG GY
Sbjct: 185 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGY 231


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  121 bits (304), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++LKSE F  +    G+   +  +    D ++LDL L    G E
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+  S   D V GL+SGADDY+ KPF  +EL+AR+RA +R S  
Sbjct: 64  VCREIREIS-SVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  L+  GD+ V++   TV   G  I LT  E+ ++  L+ +     ++E  L  ++  
Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+       + I TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGY 220


>gi|260576068|ref|ZP_05844062.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021767|gb|EEW25069.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 225

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDD + A  +   L     N +V D+   G DG+       +D +++D  +  I
Sbjct: 1   MRILLIEDDPSAADYVARGLSE---NGHVCDILADGTDGLFQATRESYDVLVVDRMIPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++RALR A   TPV  L+ +  I+D+V GL++G DDY++KPF   EL+AR+ A+ R
Sbjct: 58  DGLSLVRALRAAGRKTPVLFLTALGGIDDRVEGLEAGGDDYLTKPFAFAELMARVNALAR 117

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R      ++L+   DL ++L  +     G +I L  KE+ ++E+L   +   +T+ M L 
Sbjct: 118 RPPVQEVKTLLRVADLELDLMRREARRAGQQIDLLPKEFTLLEVLMRNEGRVVTRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D   +P+  +++  I +LR K+         + TV   GY
Sbjct: 178 RVWDFHFDPKTSVVETHISRLRAKIDRPF-AVALLHTVKNMGY 219


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 127/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D++ +   ++  LK +++ V +   GE+ I+L  K      IILD+ +  + G
Sbjct: 4   IKILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +  L+ +R      PV +L+  S   D+++G   GAD+YISKPF+ + LVAR+ A++RRS
Sbjct: 64  WTALKTIR-EHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + L+  G + ++  A +V V G  I L+ KEY++++     K   L++E  LN+++
Sbjct: 123 GVQKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     + + ID  + KLR KL +      YI+TVWG GY
Sbjct: 183 NYDYFGDARTIDTHVKKLRAKLMDKG---EYIKTVWGMGY 219


>gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 254

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  +++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQVEVVSFGPWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL+ +R  K ST P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR  
Sbjct: 67  VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +    L+V++++ TV  +   I +  KE++++  L+  KN   T+E  L  +
Sbjct: 125 VDNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEV 184

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           + G D P + + +DV I +LR+KL    GG N+ IETVWG GY
Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGY 223


>gi|167909712|ref|ZP_02496803.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
          Length = 246

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGG 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++ +LRKK+  +      I TV G GY L + A
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAA 225


>gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
 gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
          Length = 226

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +   +   L    + V     GE+ +E     ++D I+LDL L  + G 
Sbjct: 1   MRLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 61  EILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 + +G +S +   +    +G ++ LT KE  ++E L L     +++E  + H++D
Sbjct: 121 VQKDVCLESGGISFDTIKREAYAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LR+KL    G    +  V G GY +RE A
Sbjct: 181 ASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKV-GEGYKIREEA 224


>gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +L+    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|154483122|ref|ZP_02025570.1| hypothetical protein EUBVEN_00823 [Eubacterium ventriosum ATCC
           27560]
 gi|149735930|gb|EDM51816.1| hypothetical protein EUBVEN_00823 [Eubacterium ventriosum ATCC
           27560]
          Length = 236

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 18/235 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+K +A  +E +L+S ++ V     G +G+ L K    D I+LDLGL D+ G +V
Sbjct: 6   ILLIEDEKNIADFVEKILRSNDYKVVTASTGGEGLSLIKSRCPDIILLDLGLPDMDGLDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           + ++R   +  P+ +LS  ++  DKV  L  GADDYI+KPF+  EL+ARIR  +R S   
Sbjct: 66  ISSVRSWSL-CPIIVLSARTTDNDKVSSLDLGADDYITKPFSTNELLARIRTSLRHS--- 121

Query: 123 AQSLIVTGD-----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             + +VT D           L ++   + +   G  IHLT  EY+++  ++      +T 
Sbjct: 122 --NRVVTNDSVSEKPYAALGLKIDFMKRIITRDGEPIHLTPVEYKIVAYIAKNSGKVITY 179

Query: 172 EMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              L +++    DE + KI+ V +  +R+K+        YI T  G GY + E++
Sbjct: 180 SSILKNVWGPNMDENDNKILRVNMANIRRKIEPNPAEPTYILTELGVGYRMLEDS 234


>gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator
           [Psychrobacter sp. PRwf-1]
 gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter sp. PRwf-1]
          Length = 244

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K L   I+  L    F V     G DG       +F  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  S+I   DL +++  +TV      I LT KE+ +++L   R+   L + +  + +
Sbjct: 121 QSDYKSSVIHMADLKMDIAKRTVYRGDTNIKLTAKEFALLQLFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKIDDGFDIK-LIHTVRGMGYKL 222


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +LK E F  ++    G +GI+LCK  + D ++LD+ + D+ GF
Sbjct: 9   KILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      PV  LS  S   DK+  L  GADDY++KPF+ +E+  RI+A +RR+ 
Sbjct: 69  EVCKNIRNFSF-VPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  GD+ ++L+   V      + LT KEY ++  ++   N  LTK+M 
Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +++   E     I V I KLR+KL +      YI T  G GY L+
Sbjct: 188 CDEVWNDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKLK 235


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 127/237 (53%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G+D ++    + FD ++LDL L  +PG  
Sbjct: 8   RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPGER 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 68  VCRVIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++    ++  G+L++++    V V    + LT  E++++  LS       ++    E  
Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L + ++G +    + ID  +  LR K+ +      ++ TV G GY   +  K  + +
Sbjct: 187 LGYDFEGYE----RTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQPSQQ 239


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A+ +E  LK E ++V V + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + +        +V  D+ +  +A  ++  G  I LT +E+ +   L+  +   LT+E 
Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++      +V+ +DV + +LR+K+ + +    YI T  G GY + E
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGE 233


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK+L N     + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKEL-NGTTDADPIRTVRSAGYSLDMDA 229


>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
 gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G       L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +  ++ + L +  F+V     G   +        + ++LDLGL D+ GFE
Sbjct: 3   KILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR      PV +LS  +   +KV  L +GADDY++KPF  +EL+AR+RA VRR   
Sbjct: 63  VLAGLR-GWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++   + ++      V+L AK V      +HLT  E+ ++ELL   +   ++++  L+ +
Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +    + E   + V++ +LR+KL        ++ T  G GY    +AK    
Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFEPSAKQRPA 233


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ ++  +   L  E + V +   GEDG+          +++DL L  + GFEV
Sbjct: 16  ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ ++S   S  DK+  L  GADDYI+KPF+  ELVAR+++ +RR   +
Sbjct: 76  CRQVR-QQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134

Query: 123 ----AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                Q  +++ D L++N + + VE  G  + LT KE++++  L+       +KE   N 
Sbjct: 135 NGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNR 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   D  +++ + V I  +R+KL + +    +I+TVWG GY
Sbjct: 195 VWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGY 236


>gi|257056405|ref|YP_003134237.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586277|gb|ACU97410.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 231

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L+ E   V V   G++G E      +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEAPLAEAVARGLRREGMAVDVAFTGDEGHEKATVTRYDVVVLDRDLPGMSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +  +   T V +L+   ++ D+V GL  GADDY++KPF   ELVAR+RA+ RR+ 
Sbjct: 61  DLCREIVNSDELTRVLMLTASGTVSDRVEGLSLGADDYLAKPFAFPELVARVRALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++V GD++++   +TV      + LT KE+ ++E+L   K   ++ E  L  ++D
Sbjct: 121 PATPPVLVAGDVTLDPAKRTVHRGERLVELTRKEFGVLEVLLSAKGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LRKKL    G    IETV G GY
Sbjct: 181 ENADPFTTTVRVTVMTLRKKL----GEPGIIETVVGSGY 215


>gi|239628736|ref|ZP_04671767.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518882|gb|EEQ58748.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK + + +++ LK+  ++  + D G  GI L      D I+LDLGL DI G EV
Sbjct: 6   ILVIEDDKTIQNFMKISLKTRGYSYILADNGLSGISLFYANHPDLILLDLGLPDIDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  + +TPV ++S      +K+  L  GADDY++KPF+ EEL+ARIR  +R    H
Sbjct: 66  LKQIR-QQSNTPVIVVSARGQEREKINALDQGADDYVTKPFSAEELLARIRVGLR----H 120

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S +   D    LD        + + V    IHLT  EY+M+ LL       LT     
Sbjct: 121 KNSFVSRQDQEFELDYFRMDFEKRKIFVHDQEIHLTPLEYKMMVLLVNNSGKVLTHHYIQ 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      + + + VF+  +R+K+ +      +I T  G GY
Sbjct: 181 QEVWGYDTTDDYQSLRVFMANIRRKIEDNTANPRFILTEVGVGY 224


>gi|168177977|ref|ZP_02612641.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670984|gb|EDT82958.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+ ++   +   L+++ + V    L +D  +   F+  D ++LD+ L D  GF
Sbjct: 3   FKVLVVEDEISINDILVSALRADGYKVKGVFLAKDAKDALDFFHPDLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRHIN-DKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVS 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   + + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSDEEFIYINKFVKVNLEGRIVFKDDKEVKLKPQEYELLEFFVKNRNIVFSREILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+T +G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENSASIIDTAFGIGYVMR 227


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E  +   +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    S     DL   LD KT EV+     I LT +E+ ++  L   +N  L +E  + 
Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  ++DV+I  LRKK+ +       I TV G GYVL+
Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A   +  L+   F V + + G+ G+      ++  IILDL L ++ GFE
Sbjct: 3   KILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKRVREEK-NIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY-- 119

Query: 122 HAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             + LI TG           + ++  A+ V V G     T KE+ ++  L+   N   TK
Sbjct: 120 --ERLIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTK 177

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 178 EELFQEIWDMESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRFK 228


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ ++L +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     S +  G L+++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G   +      E D ++LD+ L D+ GF 
Sbjct: 15  RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE+VARIRAI+RR+  
Sbjct: 75  VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRT-- 132

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           HA       ++   DL ++ DA  V   G  + L+  E++++  L L     ++K   L+
Sbjct: 133 HATQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILD 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSN--AAGGKNY---IETVWGRGYVLRE 223
           H+++     +  I++ +I  LR+K+     A G+     I+T  G GY+LRE
Sbjct: 193 HVWEYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYMLRE 244


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +     ++D +ILD+ L  + G 
Sbjct: 1   MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR R
Sbjct: 61  TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q+     LI T   S+N   + V + G  + +LT KE+ ++  L+       ++E  
Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKLS+    K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSEE--KPFLYTVWGVGYKFDED 227


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 16/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR--- 119

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           HAQ+            IV G L +  DA  V+ +G  I LT +E++++  L+      +T
Sbjct: 120 HAQTATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +E  L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR N + E+
Sbjct: 180 REHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLR-NPEQES 237


>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
 gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
          Length = 240

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 7   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 67  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G       L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 127 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 230


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ +   +  + D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-AKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q      + I  G L +N D+ +V   G ++ LT +E++++  L+      +T+E  L
Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+    G    + T  G GY LR    D
Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYLRNPEND 233


>gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900]
          Length = 254

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR   I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 202 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 248


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 20/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ ++  I L L  E F+    + G+  I L + Y+ D I+LD+ L    G++
Sbjct: 6   KILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGYD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREIRKTS-KVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124

Query: 119 ----SRGHAQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                +    + IV G          DL +NL   +V     R+ +  KE ++   L+  
Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N   T+E  L+ ++      + + +DV + +LR+K+++ A  +  + TVWG GY
Sbjct: 185 PNQVFTREQLLDRIWGYEYIGDTRTVDVHVKRLRQKINDHAEWR--LSTVWGVGY 237


>gi|34498090|ref|NP_902305.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34103945|gb|AAQ60305.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 221

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A  I   L++    V                  D +IL+LGL D  G 
Sbjct: 1   MRVLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGLPDENGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR   +  P+ +L+   S+ED+V  L++GADDY+ KPF+ +ELVAR+ A+ RR  
Sbjct: 61  SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G L ++     V +    + LT +E  ++  L       L+ +   + LYD
Sbjct: 121 GRSVDVIEDGRLRLDPARGEVWLDESPVALTRREMALLMALLRADGRILSPDQLKDRLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   ++V IC LR+KL     G N ++TV G GY
Sbjct: 181 YSEEIESNALNVHICHLRRKL-----GPNVVKTVRGLGY 214


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L N     + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKAL-NGTTDADPIRTVRSAGYSLDMDA 229


>gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+     I  +L+   + V   +      EL +  +FD ++ D+ +  + G+
Sbjct: 2   VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR    S P+  ++    I  K +G  SG DDY+ KP N  EL+ RI+A++RR++
Sbjct: 62  QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L++ G+L++N +A T +V    + +T +E+Q++  L    +   ++   +N  +D
Sbjct: 122 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +  ++ +DV+I KLR+K   A G    I+T+ G GY
Sbjct: 182 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 218


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 131/228 (57%), Gaps = 13/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D++A+A  I+   + E + V   D+ +DG+E   F +   +  I+LD+ +  +
Sbjct: 3   IKILVVDDEQAIADIIKFNFEREGYGV---DIAKDGLEALNFVKDNTYSLILLDIMMPKL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+ L+ +R +   TPV +L+      DKV GL+ GADDY+ KPF+  EL+AR++A++R
Sbjct: 60  NGFDTLKEIRKSH-KTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLR 118

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R        G    +I  G+L ++++   V+  G  I LT +E+++++ LS       ++
Sbjct: 119 RFGPPTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSR 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L  +++     +++ +DV I +LR+K+ + +    YI T  G GY
Sbjct: 179 EELLEKVWEYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGY 226


>gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ycbL
 gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 226

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G + L
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  ++
Sbjct: 61  KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I    L++++D  +V   G  + LT  E+Q++ L +       TKE     
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225


>gi|110799909|ref|YP_694689.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206598|ref|ZP_02632603.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210569|ref|ZP_02636194.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168217561|ref|ZP_02643186.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182625212|ref|ZP_02952987.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674556|gb|ABG83543.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661960|gb|EDT14643.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711371|gb|EDT23553.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177909524|gb|EDT71964.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182380359|gb|EDT77838.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E       +   D +EL    + D IILD  L DI GF
Sbjct: 1   MKILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            ++  ++      P+ +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI    + I 
Sbjct: 61  NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + L V GDL++ LD +   ++   I+LT KE++++  L   KN   ++E  LN
Sbjct: 120 SDSKKKVKDLTV-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY L E
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222


>gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 247

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  + + +   L+   F V   + G       +      ++LD+ + ++ G   
Sbjct: 5   ILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELDGISA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR    
Sbjct: 65  LRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRRGSI 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+   L 
Sbjct: 125 APSAPEQRAPYRFGRFEVNFPARELRRDGERIALRSSEFAMLKVFVTHAMTVLTRAQLLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 185 KLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|323527869|ref|YP_004230022.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384871|gb|ADX56962.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 228

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV IL+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL N    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223


>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T17]
          Length = 289

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 105/206 (50%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 1   MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 61  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG 206
              E    I+DV+I  LR K+    G
Sbjct: 181 AAYEARSNIVDVYIRYLRDKIDRPFG 206


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCD-KDIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +   +   I K+R K        N+I TVWG GY
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGY 222


>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
          Length = 239

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G       L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|85713829|ref|ZP_01044819.1| two component transcriptional regulatory protein, winged-helix
           family protein [Nitrobacter sp. Nb-311A]
 gi|85699733|gb|EAQ37600.1| two component transcriptional regulatory protein, winged-helix
           family protein [Nitrobacter sp. Nb-311A]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED + LA  +   L++  + + +     D         + A+ILDLGL D  G 
Sbjct: 1   MRVLIVEDSEELADLLAKGLQAAGYEIDLLTNVADAFSALGTTRYAALILDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K   PV +L+    +ED+V GL+SGADDY+ KPF+ +ELVAR+ A++RR  
Sbjct: 61  SILRELRHRKDPLPVLVLTARGGVEDRVSGLRSGADDYLVKPFSFDELVARLEALLRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   +++ + + +   V     +L+ +E  ++ELL  RK   ++K++  + ++ 
Sbjct: 121 QLLGSSLKLANVTFDSEGRQAFVDMKPQNLSAREIAVLELLLRRKGNVVSKKLLEDQIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     ++V++ +LRK+L +  G K  I T+ G GYV+ E+
Sbjct: 181 LTGDVASNAVEVYVHRLRKQLLD-IGAKVKISTIRGVGYVMMES 223


>gi|330896968|gb|EGH28534.1| two component transcriptional regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330977797|gb|EGH77700.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD+ +A  I   L ++  N+           +    +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPDEDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR+LR    + PV IL+    ++D+V+GL +GADDY+ KPF+  EL AR+  +VRR  
Sbjct: 61  SLLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I  G L+ +   +   + G  I L+ +E  ++  L       L+ E   + +Y 
Sbjct: 121 GRTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             DE E   ++V I  LR+KL     G   IETV G GY L   +  ++C
Sbjct: 181 FTDEVESNALNVHIFHLRRKL-----GGQIIETVRGSGYRLGVASSLQSC 225


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+   +   LK  N+ V   D G D ++  +    D +I+DL L  + G 
Sbjct: 3   MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E  + +R      P+ +L+  SS  DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     L VTG ++++    TV+  G  + LT  E+++++ L    N  L+++  
Sbjct: 123 RVVDLKKIVPELPVTG-VTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      + +I+D+ I  LR KL +       I+T+ G GY
Sbjct: 182 LEQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|300088634|ref|YP_003759156.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528367|gb|ADJ26835.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLI+DD+ L  +           V     G DG        FD IILD+ L D  GF
Sbjct: 1   MKILLIDDDEQLCATFSRAAGEAGHVVECVYTGGDGETFAGNTPFDLIILDIMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR A ++TP+ +L+   + ++K +GL +GADDY++KPF   EL ARI A+ RR R
Sbjct: 61  SVCQDLRKAGVTTPILMLTARGTAQEKAQGLNTGADDYLAKPFEYNELFARICALGRRPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---EMFLNH 177
             A  +I    +++++ A  V ++G  + LT  E++++EL +   N  + +   E +++ 
Sbjct: 121 QMAPLVIEIDGITIDITAHRVSLKGETVELTANEFRVLELFANNPNVIIERVRIEEYIST 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221
            +D   + +  ++DV I +LR+KL  +   G   I+TV G GY L
Sbjct: 181 THD--KDFKSNVVDVIIKRLREKLGWDPQTGP--IQTVRGCGYRL 221


>gi|295678163|ref|YP_003606687.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295438006|gb|ADG17176.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 228

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV IL+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL N    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + +     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L ++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + +     ++  I +LR K+         I TVWGRGY L      E
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKLSPTGAGE 238


>gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii]
          Length = 232

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IED++ LA  ++  L   N+ V +   G  G+ L +  ++D I+LD+ L    GF
Sbjct: 4   LKILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVMLPGRDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      P+ +L+    +ED+VRGLQ GADDY++KPF   EL+AR+ A+ RR  
Sbjct: 64  SVLAELRKGD-RVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQS 122

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + Q+++  GDL ++L  +     G R+ LT KE+ ++ LL  ++   L++    
Sbjct: 123 NSVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLA 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D        +++V + +LR K+ +    K  + TV G GYVL
Sbjct: 183 EQVWDINFNSNTNVVEVAVRRLRGKVDDPFPTK-LLHTVRGMGYVL 227


>gi|261381187|ref|ZP_05985760.1| QseB protein [Neisseria subflava NJ9703]
 gi|284795806|gb|EFC51153.1| QseB protein [Neisseria subflava NJ9703]
          Length = 225

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V    LG +         +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSLGSEVASAVAAQAYDLLLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R    + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+L+  G + +N      EV G    I L+ KE+ +++ L LR    L++    + +
Sbjct: 121 GQAQTLLTNGIIMLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y   +E E   +D  I  LRKKL     GK  I+ V G G+++ +N
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVPQN 221


>gi|168214081|ref|ZP_02639706.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170714439|gb|EDT26621.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E       +   D +EL    + D IILD  L DI GF
Sbjct: 1   MKILVVDDEISILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            ++  ++      P+ +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI    + I 
Sbjct: 61  NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + L V GDL++ LD +   ++   I+LT KE++++  L   KN   ++E  LN
Sbjct: 120 SDSKKKVKDLTV-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY L E
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      ++ I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    S     DL   LD KT EV+   H + LT +E+ ++  L   +N  L +E  + 
Sbjct: 124 IKEEENSSYQIADLY--LDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  ++DV+I  LR+K+ +       I TV G GYVL+
Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRRKI-DCNVDVPLIHTVRGVGYVLK 226


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K +   +   L  E +       G+ G++L    + D ++LDL L  + GF+
Sbjct: 4   RILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R++R    +TPV +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRREM 123

Query: 121 -GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            G+A +  V       G +SV+ D       G  + LT +EY+++  L+ R     ++E 
Sbjct: 124 AGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSREA 183

Query: 174 FLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++  Y+G    +V+ +DV + +LR+K+ +       I T  G+GY+L
Sbjct: 184 LMENVWNYEGY-VGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLL 232


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G +   L K+ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREA--LAKWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++        + +D+ + +LRKKL N+     YI+T++G GY
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGY 219


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A      L+   F+  +   GE+G+ L K  E+  I+LDL L  I GF+
Sbjct: 3   RILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R   +  P+ +++      DK+RG   GADDYI KPFN  ELVAR++A   R   
Sbjct: 63  LCREMR-EFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             SR   +  +    L ++ D++ V   G     T KE+ ++  L+   +   +KE    
Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RIWGYDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRFK 227


>gi|148547607|ref|YP_001267709.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511665|gb|ABQ78525.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 253

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 24/235 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   + L L  E F     D GE+G        F  ++LD+ L  I G EV
Sbjct: 24  VLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLPGISGIEV 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR + H
Sbjct: 84  LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVKPH 142

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE- 172
                        + +G L +    +        + LTG E+ ++E+L+ +    ++K+ 
Sbjct: 143 LMGDTSAPEVPEQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQLVSKQD 202

Query: 173 MFLNHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LN L      YD R       IDV +  +R+KL   A G ++I++V G GY+L
Sbjct: 203 LSLNALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 250


>gi|114565051|ref|YP_752565.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114336344|gb|ABI73726.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 225

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDDK +  +++  LK   + V ++ D GE  +   +  ++D ++LDLGL  + G
Sbjct: 1   MRILLVEDDKMIGDAMQSALKDVAYAVDWICD-GEAALHSLRCQQYDVVLLDLGLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R    +  V IL+   S+ED+V+GL  GADDY+ KPF+  EL+ARIRA+ RR+
Sbjct: 60  LQVMQYIRAQHPALAVIILTARDSLEDRVKGLDLGADDYLVKPFDITELLARIRAVTRRN 119

Query: 120 RGHAQSLIVTGDLSVNL---DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                S +    + +N    +AKT+      I L+ +E+ +++ L +R  +  +K     
Sbjct: 120 ANQHTSELTNNIVWLNPATHEAKTLTQDN--ILLSNREFALLQTLLIRPGSIHSKSDLEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +Y   +E E   ++  I  LRKKL     G   I+ V G G+++ +NA
Sbjct: 178 RIYGWGEEVESNAVEFLIHCLRKKL-----GTETIKNVRGVGWMVSKNA 221


>gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium
           1,231,501]
 gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium
           1,231,501]
          Length = 222

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+ A+   +   L+   + VY    G++  ++ +  EFD  +LD+ L +I G+
Sbjct: 5   MKILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R  +   PV  L+    I D+V GL+SGA+DYI+KPF+ EEL+AR+  ++RR+ 
Sbjct: 65  EVFAYMR--EYDLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  L+    + +N   + V  +   + LT KEY+++  L   K   L +E     ++
Sbjct: 123 KSSSNKLLKWKYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKAIILPREKIYQKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +EP  + +D+ I ++R KL         + T++G GY+L
Sbjct: 183 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 220


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++V +   G DG+       FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +  TPV  L+    I D+++GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLR-KEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   DL +++  + V   G RI LT KE+ ++ L +  ++  L++ +  + ++D
Sbjct: 120 SREEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV + +LR K+ +    K  I +V G GY
Sbjct: 180 MNFDSDTNVVDVAVRRLRLKIDDPFQLK-LIHSVRGIGY 217


>gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V DL   GE+G+ L    ++D +++D  L   
Sbjct: 16  MRLLIIEDDR---ESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKR 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 73  DGLSVIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++    GDL ++  +  V   G  + L  +E++++E L       +T+ M L 
Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRAKIDKGF-DRPLLHTIRGAGYMIRDGIR 241


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  + L L  + F V++   GE G+   +     A +LD+ L  + G E+
Sbjct: 10  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A   TPV  L+      D+V GL+ GADDY++KPF+  EL+AR+RA++RR+ G 
Sbjct: 70  CRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRTAGV 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+     G ++++   +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 130 PAEQPRTLGAVTLDPARRTVTAGGTPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +DV + ++R KL    G  + I T  G GY
Sbjct: 190 AAHAGTRTVDVHVAQVRAKL----GPDSVIRTHRGVGY 223


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ + +L    + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R          +  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 RMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   +++ L  E F V     G + + L K   +D ++LDL L  + G  
Sbjct: 3   KILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDGLT 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           + + +R  K S  PV IL+      D+V GL+ GADDYI KPF+  E+VAR++A++RR  
Sbjct: 63  ICKEIR--KFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMA 120

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + L+   DL +N +++ V V+G  I LT +E+ ++  L+       ++E  
Sbjct: 121 PGTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L +++      +++ +D  I +LR KLS   G +  I TVWG GY
Sbjct: 181 LTNVWGYDYFGDLRTVDTHINRLRDKLS-VNGARQPIATVWGVGY 224


>gi|317401619|gb|EFV82245.1| response regulator protein [Achromobacter xylosoxidans C54]
          Length = 225

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDA+ILDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLVAERRLAVEEFDAVILDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ +K+  L  GADD++ KPF  EEL AR+ A+VR
Sbjct: 59  DGHTLLAKIRARDDRTPVLVLTARDSLAEKIGTLHEGADDFLPKPFVVEELEARLIALVR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G+L      +   V G  + L+ +E+ ++ +L  +    + K+  L+ 
Sbjct: 119 RSRGREHPRLTLGNLVFETSGQKFTVSGQALQLSPREHAVLRVLIQKSGEPINKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     +  ++ I+V + +LRKKL+        I T+ G GY L ENA D
Sbjct: 179 IVTDDADINLEAIEVLVHRLRKKLAETG---VQITTMRGMGYCL-ENAVD 224


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  I + L+ E ++V     GE+ + + +    D +ILD+ +  I G+
Sbjct: 4   ISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKIDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R+ K + P+  LS  +S  DKV GL  GADDY++KPF+  ELVAR+ A +RR  
Sbjct: 64  EVARQIRI-KHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRRFL 122

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q       S++ T  +++NLD + V V G +I LT KE+ ++ LL+       + E 
Sbjct: 123 TLNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYSVEH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++ G        + V I  LRKK+         I+TVWG GY  
Sbjct: 183 IFQQVWTGDYYDGGSTVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTF 230


>gi|254486691|ref|ZP_05099896.1| two component transcriptional regulator, winged helix family
           [Roseobacter sp. GAI101]
 gi|214043560|gb|EEB84198.1| two component transcriptional regulator, winged helix family
           [Roseobacter sp. GAI101]
          Length = 218

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+ ALA  +   L++++ NV      ++        ++D ++LDL L D  G 
Sbjct: 1   MRILLIEDEAALARPLMEHLEADHHNVEWFGTLDEADSAILALDYDVVLLDLQLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R   + TP+ IL+    + D++ GL  GADDY+ KPF+ +E+ ARI  + RRS 
Sbjct: 61  SFLSTVRGRGLRTPIIILTARDKVSDRIDGLNRGADDYVIKPFDLDEVTARIHTVCRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL++ L   +V   G+ + LT +E+ ++++L  RK   + KE     +Y 
Sbjct: 121 DLLTQTISIRDLTICLSDHSVSRAGNPVRLTAREWGVLDVLLRRKTQIVPKETLETAIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +E E   ++  I +LR KL     GK+ I T  G GY L+
Sbjct: 181 YGEEVESNALEAHISRLRTKL-----GKDLIATHRGIGYSLQ 217


>gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis IP 32953]
 gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Pestoides F]
 gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola]
 gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis PB1/+]
 gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
 gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis]
 gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953]
 gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F]
 gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia
           pseudotuberculosis IP 31758]
 gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola]
 gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Pestoides A]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRGQGY 218


>gi|332686801|ref|YP_004456575.1| DNA-binding heavy metal response regulator [Melissococcus plutonius
           ATCC 35311]
 gi|332370810|dbj|BAK21766.1| DNA-binding heavy metal response regulator [Melissococcus plutonius
           ATCC 35311]
          Length = 228

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 129/226 (57%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  +EL L+ E +   V   G  G+E      ++AI+LDL L ++ G EV
Sbjct: 4   ILIIEDEKNLARFVELELEHEGYTAEVHYNGRTGLEAALNNNWNAILLDLMLPELNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------IV 116
            R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA      I 
Sbjct: 64  CRRIRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRIDIE 122

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+ I   DL++  + + V  +   I LT +EY+++  L    N  L +++ LN
Sbjct: 123 GNKNITKQTTITYRDLTIEKENRIVRRESEIIELTKREYELLLALMKNVNVVLARDVLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++DV+I  LR K+ +    ++YI+TV G GYV+R
Sbjct: 183 KVWGYETEVETNVVDVYIRYLRNKI-DLPREESYIQTVRGTGYVMR 227


>gi|332283869|ref|YP_004415780.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
 gi|330427822|gb|AEC19156.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59
           MR+L+IEDD  L H+++  L  +    Y  D   DG ++       +  L L   ++PG 
Sbjct: 1   MRVLVIEDDTTLGHALQEFLVEQG---YAVDWLADGDQVLGAVAGQSYDLLLLDLNLPGH 57

Query: 60  --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              ++L  LR      PV IL+    +ED+V GL +GADDY++KPF+  EL AR+RA  R
Sbjct: 58  SGLDILAKLRAEGEQVPVLILTARDGVEDRVAGLDAGADDYVTKPFDLTELAARVRAFGR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G AQ  I  G L  +   + V   G R+ L+ +E  ++E+L  R    +TK   +N 
Sbjct: 118 RRTGQAQPFIEAGPLLFDTVGREVRGNGERLSLSVREISVLEMLMARAGRVVTKRQIVNS 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L     +     ++V++ +LRK+L    G    I+TV G GY+L
Sbjct: 178 LSAWDADFSENAVEVYVYRLRKRLE---GTGASIQTVRGFGYLL 218


>gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD A+A      L+++ F + +   G+ G+E      +D +++D+ L    GF++
Sbjct: 4   ILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVMLPGKDGFQI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-------I 115
           +R +R  K   P+ ++S      DK+RGL  GADDYISKPF+  ELVAR++A       +
Sbjct: 64  VREVRKKK-DIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARYERL 122

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + ++     S I  G L +  +   V ++G  I LT KE++++  L+  +    +K+   
Sbjct: 123 IAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKDALF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V + +LR+KL        +IETVWG GY L+
Sbjct: 183 ERVWGLDAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRLK 229


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 17/225 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A++  +   L+ E + V V   G  G  L      D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDAAISEPLARALRREGYEVTVRADGP-GALLAGQSGVDLVVLDLGLPGMDGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 62  VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRG-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  T DL   +    ++++ HR       ++LT KE+ ++ +L       +T++  
Sbjct: 120 -------TPDLGNGVHGVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQL 172

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++D       K +D+ I  LRKKL + A    +I TV G G+
Sbjct: 173 MREVWDTTWWSSTKTLDMHISWLRKKLGDEASRPRFITTVRGVGF 217


>gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           MRILL+EDD      ++ +L       Y+ D  EDG E+ ++     ++D +ILD  L  
Sbjct: 1   MRILLVEDDYEQLEPLQGILSEAG---YIVDTAEDG-EIAEWLISQKDYDLLILDWMLPT 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G  + R  R +  + P+ +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ 
Sbjct: 57  ISGLSLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALA 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR        +   DL ++L   TVE +  ++ L+ +E +++E L    N  LT+     
Sbjct: 117 RRVPNWQGDSLRVADLQLHLAYLTVEREQLKVELSPREARLLEYLMRHPNQVLTRSQIEE 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L++   EPE   + V + KLR +L      + +I TV+G GY L
Sbjct: 177 ALWEWGMEPESNALTVLVRKLRHRLQQVDAAE-WIRTVYGMGYRL 220


>gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWS 180

Query: 181 GRDEPEVK--IIDVFICKLRKKL 201
             ++ ++    + ++I  LR+KL
Sbjct: 181 KEEDKDLDEGFVWIYISYLRQKL 203


>gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
 gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
          Length = 219

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +D +ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +  GD+ +N+    V +    + LT +E+ ++ELL+  +   ++ E  
Sbjct: 124 MNGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I K+R+K+        Y++TVWG GY
Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228


>gi|66047192|ref|YP_237033.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257899|gb|AAY38995.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330973017|gb|EGH73083.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 223

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQCCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  121 bits (304), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  L   +   L+ + + +     GE+ ++      FD IILDL L  I G E
Sbjct: 4   KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R     TP+ +L+       K+ GL+ GADDY++KPFN  EL ARI+A++RR++ 
Sbjct: 64  VCQTIRQTS-QTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   D  +N   + V + G  ++LT KE+ ++ LL+       ++E  L  
Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV + +LR+K+ + +    YI T WG GY  R
Sbjct: 183 IWGYEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYFR 227


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  + LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|220910718|ref|YP_002486028.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219867490|gb|ACL47827.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 234

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  LA ++   L S  + V   D G  G+ L +   +D ++LD  L  + G 
Sbjct: 1   MKILLVEDDPDLATALMKGLTSNLYQVDWADDGAAGLALAQVKAYDLVLLDFYLPKLSGL 60

Query: 61  EVLRALR---------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           E+ R +R               P+ +L+G S+   KV  L +GADD++ KP + +EL+AR
Sbjct: 61  ELCRKIRRGSERVTDAAPNQEIPILVLTGESATAQKVLCLDAGADDHVVKPVDLDELLAR 120

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           IRA++RR  G    ++  G+L ++  +  V+ +   + LT KEY ++ELL        + 
Sbjct: 121 IRALLRRGMGQRSPILHWGELQLDPSSYEVKFRQQVVPLTSKEYAVLELLLRHPTQVFSP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++ L+ G D      I  +I  LR+KL    G +  IET  G GY L+  
Sbjct: 181 AHMIDRLWAGDDSRADATIRFYIQTLRQKLKQ-VGAEEIIETKHGLGYRLKPQ 232


>gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 225

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L   I   L+     V     G+D +      ++D +ILD  +  + G 
Sbjct: 1   MRILLLEDDRDLGPWITKGLREAGHVVDHFPDGKDALIAAMGQDYDLLILDRMVPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR +K +TP   L+ +  ++ +V G ++G DDY++KPF   EL AR+ A+ RR  
Sbjct: 61  AVLKSLRASKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRRE 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      S++    L ++L A++ E QG  I L  KE++++E    R    +T+ M L  
Sbjct: 121 GTQDSEPSVLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  I +LR K+      +  I T  G GYV 
Sbjct: 181 VWDMSFDPTTSVVETHISRLRAKVDKPF-DEELIRTRRGEGYVF 223


>gi|330808523|ref|YP_004352985.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376631|gb|AEA67981.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    FN  +   G  G +L    E+  +ILD+ L    G+
Sbjct: 1   MKLLIVEDQTKTGQYLRQGLGEAGFNADLVADGITGQQLVLSGEYALLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++L+A+R A + TPV  L+   +++D+V GL+ GADDY+ KPF   EL+AR+R+++RR S
Sbjct: 61  QILQAVRGAGLDTPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L  + VE  G RI LT KE+ ++E+L  R+   L K +  + ++
Sbjct: 121 STQQETSLQLADLRLDLIRRRVERSGRRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E +
Sbjct: 181 DMNFDSDTNVIEVAIRRLRIKIDDDFPSK-LIHTVRGMGYVLEERS 225


>gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
 gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L +   +D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    +TP  ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 61  SVIGTLRETGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G + ++    GDL ++  +  V+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + T+ G GY++R+  +
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGQ-EVPLLHTIRGAGYMIRDGLR 226


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|270307528|ref|YP_003329586.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270153420|gb|ACZ61258.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 226

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 131/228 (57%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAH--SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+ILLIEDDK +    +I L +  ++ +++ +  G+ G+E+ +  + D ++LDL L D+ 
Sbjct: 1   MKILLIEDDKDIIEYITIALEMGHKDISLFTSMDGKRGLEILETQQPDLVMLDLMLPDMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF +L++++++  +TPV I++  +S  D V+GL  GAD+YI KPF + E++ARI A+VR 
Sbjct: 61  GFNLLKSIKLSS-NTPVIIITARASEIDIVKGLMLGADEYIIKPFGQMEIIARIMAVVRS 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +A   I+ GD+  N    T+      I L+  E  +I  L  +     T E     L
Sbjct: 120 HKSNALDDIIRGDIRFNAFKSTISFYDKVISLSRTEALIINELFNKDEQVTTYEEIGQAL 179

Query: 179 YDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G   P ++  I V+I +LR KLS A+ GK  I T  G GY L  N+
Sbjct: 180 W-GESYPGMQNAIRVYIMRLRTKLSQASSGKVLIRTKPGIGYYLSLNS 226


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 19  MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 76

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 77  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 136

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 137 KKTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 197 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239


>gi|330964534|gb|EGH64794.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 223

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVCIVTFRGLGYLL 218


>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 227

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  +A ++  +L+        T  G + + L +   FD ++LDL L  + G 
Sbjct: 1   MKVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGL 60

Query: 61  EVLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR    + P V +L+   S++D V GL+ GADDY+ KPF    L ARI+A++RR+
Sbjct: 61  EVCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q     G L ++LD +T       + LT KE+ ++E L      T +K+  +   +
Sbjct: 121 SRPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D P  + +   +  +R KL+      + IETV+G G+ L
Sbjct: 181 AWADVPGDESVKTHVKNIRAKLNQTGAPADLIETVYGVGFRL 222


>gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L H +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 7   MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  + S P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 67  DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 125

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A+       I  G+L ++   ++ E +G    LT  E+ ++ELL       +TK+   
Sbjct: 126 DKAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELS 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 186 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGYRIR 232


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +D+ +   ++ L L  E F   V + GE+ + L + +  D I+LD+ L  + G +V
Sbjct: 13  VLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  + S P+ +++  S   D V GL+ GADDY++KPF   ELVARIRA +RR++  
Sbjct: 73  CRTIR-QESSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G AQ+   ++ +  ++V +D   V+V+G  + L  KE+ ++ L        LT+++ L+ 
Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226
           ++      + K +DV + +LR K+       + I TV G GY L R++A+
Sbjct: 192 VWGSDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLERDHAR 241


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL L+S+ ++V+    G++ ++     + D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  QILKQIR-GKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCT 119

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +         +I  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 175 LNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++ +  +     + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FEKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229


>gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct]
          Length = 263

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 27  MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 87  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 146

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 147 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 206

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++   KD+  +Y
Sbjct: 207 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQ---KDKVIKY 255


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          QSL +  DL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VAVDNQEEDTKLQSLQIR-DLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +I++++DD  +   +   L  E F V V    EDG  L +       D I+LDL +    
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIV---AEDGKALNRILLRDTVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR
Sbjct: 67  GLSVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +       +  G  + +L ++T++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV I +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LAQLARGREFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVF 237


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 129/230 (56%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A+ ++  LK E ++V V + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + ++        V  D+ +  +A  ++  G  I LT +E+ +   L+  +   LT+E 
Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++      +V+ +DV + +LR+K+ + +    YI T  G GY + E
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGE 233


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 11/235 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+ A+  S+   L    +NV   + G   +E+ +    + +ILD+ +  + G 
Sbjct: 1   MKVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR       + IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VRRS 
Sbjct: 61  EVCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSA 120

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + Q+ +  GDL++N + + V      I LT  E+ ++ELL       L + 
Sbjct: 121 VESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRN 180

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE A 
Sbjct: 181 TILEEVW-GYDFPTSGNALEVYIGYLRRK-TEQEGESRVIYTVRGVGYVLRETAP 233


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  ++L L+ E ++V +   G +G++      +  ++LD+ L  + G EV
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++   
Sbjct: 66  LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  L+ ++
Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  ++DV+I  +RKKL +    K  I T+ G GY ++
Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+ +L   +   L+ E F V     GE  +E    +E   IILD+ L  + G E
Sbjct: 7   RILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDGTE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A+   P+ +L+      D+V GL+ GADDY++KPF   ELVAR+RAI+RR++ 
Sbjct: 67  VCRRIR-AQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +    L +NL ++ V V G  + LT  E++++  L+       ++   L  +
Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185

Query: 179 Y--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + RDE   + +DV I  LR+K+        +I T  G GYV R
Sbjct: 186 WGDEFRDE---RTVDVHIRHLREKIERDPRNPEFIHTARGVGYVFR 228


>gi|116495160|ref|YP_806894.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191638669|ref|YP_001987835.1| Response regulator [Lactobacillus casei BL23]
 gi|199597204|ref|ZP_03210636.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|227534824|ref|ZP_03964873.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239632042|ref|ZP_04675073.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|258508721|ref|YP_003171472.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539900|ref|YP_003174399.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|301066724|ref|YP_003788747.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116105310|gb|ABJ70452.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712971|emb|CAQ66977.1| Response regulator [Lactobacillus casei BL23]
 gi|199592008|gb|EDZ00083.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|227187580|gb|EEI67647.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526507|gb|EEQ65508.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|257148648|emb|CAR87621.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257151576|emb|CAR90548.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259650027|dbj|BAI42189.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|300439131|gb|ADK18897.1| DNA-binding response regulator, OmpR family [Lactobacillus casei
           str. Zhang]
 gi|327382710|gb|AEA54186.1| DNA-binding response regulator YycF [Lactobacillus casei LC2W]
 gi|327385897|gb|AEA57371.1| DNA-binding response regulator YycF [Lactobacillus casei BD-II]
          Length = 228

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL LK E +   V   G  G+E     ++DAI+LDL L ++ G E
Sbjct: 3   KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+R      +I
Sbjct: 63  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ I   DL +  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV++  +R K+ +  G  +YI+TV G GYV+R
Sbjct: 182 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYVMR 227


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|323439204|gb|EGA96931.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus O11]
 gi|323442418|gb|EGB00047.1| KDP operon transcriptional regulatory protein [Staphylococcus
           aureus O46]
          Length = 231

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ H +++ L  + +NV   +         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++ IV   G LS++  +K+V +    +HLT  E+ ++ELL+  K   LT EM L  +Y
Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLANHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|229552527|ref|ZP_04441252.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314079|gb|EEN80052.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 237

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL LK E +   V   G  G+E     ++DAI+LDL L ++ G E
Sbjct: 12  KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+R      +I
Sbjct: 72  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 130

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ I   DL +  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 131 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV++  +R K+ +  G  +YI+TV G GYV+R
Sbjct: 191 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYVMR 236


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 10  KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   + + L+ E + V  T  G + I L +    D +ILD+ L D+ G  V
Sbjct: 7   ILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLTV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    STP+ +L+  ++  D + GL  GADDY++KPFN +EL+ARIR ++RR    
Sbjct: 67  CQRVR-EFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + L V  G +++N   + V V+G  I LT  EYQ++ +L+ +    +T E  L  ++  
Sbjct: 126 NRPLTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWGN 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + V+I  LR+K+         + T WG GY L
Sbjct: 186 EPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED+  +  +I+  L++E F       G   +     +  D IILD+GL D+ GFE
Sbjct: 4   RIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + S P+  L+  +   D++ GL+ GADDYI+KPF+  E+ AR++A++RR+  
Sbjct: 64  LCKQIRQLR-SVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +    TG  +VN   + +   G  + L+  E+ +++    R     +++  +  +++ 
Sbjct: 123 GNKPSPCTGTFAVNESKRQISYLGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEH 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D    + ID  I  +R KL     GK+ I T  G GY LRE+
Sbjct: 183 PDCSLDRTIDAHIKNIRAKLRTIEPGKDPIVTYRGTGYALRED 225


>gi|158319899|ref|YP_001512406.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140098|gb|ABW18410.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RIL+IEDDK + + I L LK+   N YV D  + GI+ +  FY    D I+LDLGL DI
Sbjct: 5   LRILIIEDDKYILNFISLSLKT---NGYVFDTAKTGIQGMSLFYSNNPDVILLDLGLPDI 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++++R+     P+ I+S     ++K+  L +GADDYI+KPF+  EL+ARIR + R
Sbjct: 62  DGIDIIKSIRMIS-EVPILIVSARGEEKEKISALDAGADDYITKPFHMGELLARIRVVER 120

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + +   Q     +     L+++ + + V V    IHLT  EY+++ LL   K   LT   
Sbjct: 121 KLKKAVQGDNAEIFQLDYLTIDYERRMVLVDHKEIHLTPIEYKLLLLLVENKGKVLTHNY 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++   +  + K I VF+  LR+K+        +I T  G GY
Sbjct: 181 ILKKIWGYGETGDSKSIRVFMANLRRKIEKDKTSPRFIFTEVGVGY 226


>gi|330962432|gb|EGH62692.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M +LL+EDDK +A  +   L ++ FNV   +   G + + L     F+ +ILDLGL D  
Sbjct: 1   MHVLLVEDDKLIAEGVIAGLGAQGFNVEHVINAAGAEAMLLAA--RFEVMILDLGLPDKD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +LR LR      PV IL+   SI D+V GLQ+G DDY+ KPF+  EL AR+  + RR
Sbjct: 59  GLTLLRLLRERSFHLPVLILTARDSIADRVAGLQAGGDDYLLKPFDLRELAARLHTLHRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G + +LI  G L ++   +   + G  I L+ +E  +++ L   K   ++ +   + +
Sbjct: 119 FLGRSTNLIQHGSLGIDPTTRETFLAGEPIDLSRREQSLLKALLDSKGRIVSADQLKDAV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           Y   D+ E   ++V I  LR+KL N     N + TV G GY +   A DE+ E
Sbjct: 179 YGFADDVESNALNVHIHNLRRKLGN-----NIVHTVRGLGYRIGSAATDESDE 226


>gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
 gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
          Length = 226

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR++++EDD  +   +   L  E   V     G + +       +D +ILD     + G 
Sbjct: 1   MRLMVLEDDPEIGQWVYDGLTREGHVVDWLKDGREALAAGSINSYDVLILDRMTPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR AK++TPV  L+ M  ++D+V GL++G DDY++KPF   EL AR+ A+ RRS 
Sbjct: 61  SVLKALRAAKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSS 120

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++    T     D+ ++L  +     G  + L GKE+ ++E L        T+ M L 
Sbjct: 121 FASEQTETTKLNVKDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++   +P   +++  I +LR K+     G   I TV G GYV+ +
Sbjct: 181 KVWNMNFDPTTSVVETHISRLRGKIEKPF-GDTVIRTVRGAGYVIED 226


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|104782714|ref|YP_609212.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95111701|emb|CAK16425.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   G+ G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQAKTGQYLCQGLSEAGFATELATDGDTGQHLALTGDHDLLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+++R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQSVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q + +   DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 NASQDTHLALADLRLDLIRRRAERSGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ ++   K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDSHPTK-LIHTVRGMGYVLEE 223


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I++ LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217]
 gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217]
          Length = 223

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E  +V +   G D +       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ + S++++V GL +GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +++  G L ++L A+ V  + H I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+       + I+TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDRPF-ATDLIKTVRGAGY 219


>gi|120611675|ref|YP_971353.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590139|gb|ABM33579.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 258

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 13/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M++LL+EDD A+  +++  L      V  T LG+    L ++     DA++LDL L  + 
Sbjct: 31  MQLLLVEDDPAMQATLQRSLARRGMEV--TALGDGRAALAQWASRPPDAVVLDLTLPGLD 88

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+  R   + TPV +L+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRR
Sbjct: 89  GLQVLQQARARGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRR 148

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +R  A S +  G +    D+  +   G  + LT +E  ++  L  +    + KE
Sbjct: 149 LGDLSEARPPAPSTVSIGAIRYEKDSGAIYRDGEVMELTPRELALMHALLAQPGHAVAKE 208

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                ++ G+ + + + I+V + +LRKKL   AG    + T+ G GY+L+ +A
Sbjct: 209 RLYELVFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLKADA 258


>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 218

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 132/225 (58%), Gaps = 13/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIP 58
           ++L++EDD ++A  I+L L   N   Y+T+  EDG+   E  +  +FD I+LD+ +  + 
Sbjct: 4   KVLIVEDDLSIARLIKLNL---NLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+++  +R   ++ PV  L+  +S  DKV GL+ GADDY+ KPF   EL+ARI A++RR
Sbjct: 61  GFKLMEKIR--PLNIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    L+   +++VN + + VE+ G+ ++LT KEY +   L   KN  L++E  +  +
Sbjct: 119 Y-GKVHKLLTYKNITVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKV 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + +D+ I  LRKKL    G +  I+TV+  GY L +
Sbjct: 178 WGIDYYGETRTVDMHINALRKKL----GLQEEIKTVYKIGYRLED 218


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISHA 123

Query: 122 HAQSLIVTGDLS-VNLDAKTVEVQ-GHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +  ++ + LD KT EV+ G+ +  LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 IKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+ +       I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKI-DCNVDVPLIHTVRGVGYVLK 226


>gi|153954880|ref|YP_001395645.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855334|ref|YP_002472456.1| hypothetical protein CKR_1991 [Clostridium kluyveri NBRC 12016]
 gi|146347738|gb|EDK34274.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569058|dbj|BAH07042.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK + + I   L S+ +    TD G++ I L      D IILDLGL DI G EV
Sbjct: 7   ILIVEDDKPIRNFIAAALSSQGYKYIETDKGKEAIALSMANNPDIIILDLGLPDIDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    + P+ I+S       KV  L  GADDY++KPF   EL+ARIR  +R S   
Sbjct: 67  ISKIRELS-NIPIIIVSAREKERQKVEALDKGADDYLTKPFGIGELLARIRVSLRHSISN 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A        L V+ D + V V    IHLT  EY+++ELL       LT       
Sbjct: 126 EKENTAMHTFKVKQLFVDFDKRRVTVNDDEIHLTPIEYRIMELLCKYSGKVLTHNFITRE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E + + VF+  LR+KL        YI T  G GY L E
Sbjct: 186 IWGTSLGNETQSLRVFMANLRRKLEKDPSQPEYIYTEVGVGYRLVE 231


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   I + L++E +NV V   G++G+E+    +   +ILD+ L    G ++
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R + I  P+ ++S  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RRS   
Sbjct: 66  CRKIRESYI-IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFYM 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 + H +++I    LS+N +  TV + G+ + LT  EY+++ LL+       + E 
Sbjct: 125 NTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVEK 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++  +       + V I ++R+KL +       I+T+WG GY
Sbjct: 185 IFESVWKQKFYESNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGY 230


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED+ A    +   L++E F V   + GE+ + L      D +ILD  +  + G E
Sbjct: 7   QVLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIE 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  + +   PV +LS  S   D VRGL++GADDY+ KP+N  EL+AR+R  +RR+
Sbjct: 67  VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A +L+   D+ ++ +   V   G  + L   EY+++  L  +     +++  L+H+
Sbjct: 127 RPAAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L+   GG + I TV G GY L
Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALTREGGG-DPIRTVRGAGYAL 228


>gi|330502429|ref|YP_004379298.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328916715|gb|AEB57546.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 230

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+ED   LA S+   LK   + V V   G          ++   ILD+GL  + GF
Sbjct: 8   VRILLVEDHPQLAESVAQALKGAGWTVDVLHDGVAADLALSSEDYALAILDIGLPRLDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    + PV +L+    ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 68  AVLARLRDRGQTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L   GDL  +L A+   ++G  + LT +E  ++E +  R    ++KE     ++ 
Sbjct: 128 LGGEQLQRCGDLVYDLGARRFSLEGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     I+++I +LRKKL  +A     I T  G GY+L
Sbjct: 188 LDEDASPDAIEIYIHRLRKKLEGSA---VRIVTFRGLGYLL 225


>gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
          Length = 234

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|319764977|ref|YP_004128914.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330827171|ref|YP_004390474.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317119538|gb|ADV02027.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329312543|gb|AEB86958.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 225

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   +      V     G     L     FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLCAQLVQAIAGAGHTVESAGDGVQAHYLGDVESFDAVVLDLGLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+   S ++KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRRWRAAGRNMPVLILTARGSWQEKVAGMDAGADDYLAKPFHMEELLARLRALLRRVG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  RK   L++     H+Y 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGRPLTLTSHEFKLLSLLMQRKGEVLSRTELAEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   I+VF+ +LRKKL         IETV G GY L
Sbjct: 181 QDSERDSNTIEVFVGRLRKKLPEGC-----IETVRGLGYRL 216


>gi|295398157|ref|ZP_06808206.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973676|gb|EFG49454.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + +   +E++ V     G++ ++ + +  +   ++LD+ +    G
Sbjct: 1   MKILITDDDKEIVELLTIYATNEDYEVIQAFDGDEALKKIAENPDIAMMVLDIMMPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V++ LR   +  P+ +LS  SS  DK+ GL +GADDY++KPFN  E++ARI++++RR+
Sbjct: 61  ITVIKELRKRDVDMPILLLSAKSSDMDKISGLTTGADDYVTKPFNPLEVMARIKSLLRRA 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   + I  G L +N ++  V+   G +I LT  E+ ++ LL+   N   + +    
Sbjct: 121 STAGDDSATIEVGPLVINKNSHEVKTTDGQQIQLTALEFGILYLLASNPNNVFSADEIFE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++        K + V +  LR K+  A GG   I TVWG GY
Sbjct: 181 RVWQQESVVSAKTVMVHVSHLRDKIGEATGGDKVISTVWGVGY 223


>gi|283771249|ref|ZP_06344138.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283459454|gb|EFC06547.1| two-component system OmpR family KDP operon response regulator KdpE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 231

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A  H +++ L  + +NV   +         +  + D I+LDLGL D  G  
Sbjct: 4   KILIIEDDHATTHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLC 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      P+ ++S     +  ++ L +GA+DY++KPFN +EL ARIR I R ++ 
Sbjct: 64  LISEIR-QHTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIERIAKS 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H ++ IV   G LS++  +K+V +    +HLT  E+ ++ELLS  K   LT EM L  +Y
Sbjct: 123 HQETNIVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGY 219
              ++ E+  + V +  LR+KLS      K+ I+T    GY
Sbjct: 183 GYVNKTEMPSLRVHMTSLRQKLSQCHEDAKDIIKTHPRIGY 223


>gi|269839127|ref|YP_003323819.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790857|gb|ACZ42997.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 231

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+S    V       + +E    +  D I+LDL L D  G E
Sbjct: 8   RVLVVEDEPPILRMLASNLRSHGMQVLTAATLREAMEKHATFRPDVILLDLRLPDGRGEE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R +R+   + P+ +LS       KV  L+ GADDY++KPF  +EL+ARIR  +RR+ G
Sbjct: 68  LIRQVRLTS-TVPIIVLSAYGEEGQKVAALEMGADDYLTKPFGVKELLARIRVALRRAAG 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  +  +  G+L+++L  + V V G ++ LT  EY ++++L++  N  LT    LN ++
Sbjct: 127 KASGEPEVRVGELTLDLANRRVTVDGQQVQLTPTEYALLKVLAVHLNKVLTDSQLLNEVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E   + V++ +LR+KL  AA    Y+ T  G GY L
Sbjct: 187 GQAYGSEPHYLHVYVSRLRRKLGPAA---KYLVTEPGVGYRL 225


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL+ +R  K ST P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR  
Sbjct: 67  VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  +
Sbjct: 125 VDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEV 184

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           + G D P + + +DV I +LR+KL    GG N+ IETVWG GY
Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGY 223


>gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1]
 gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1]
          Length = 254

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  +++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVF 248


>gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V +L   GE+G+ L    ++D +++D  L   
Sbjct: 1   MRLLIIEDDR---ESADYLVKAFREVGHVAELAGDGEEGLSLADGGDYDVLVIDRMLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR   I TPV ILS +  ++D+V+GL++G DDY+ KP++  EL+AR+  + R
Sbjct: 58  DGLSVIGCLRDKGIQTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSR 117

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A+  +   GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 118 RHVGRAEETVYRVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R
Sbjct: 178 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-EQPLLHTIRGAGYMIR 222


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  IARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H + +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 122 HGE-VISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +   G   I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++ +   + + L+ E + +   + GE+ + L    ++D I+LDL L    G 
Sbjct: 11  VKILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K +TPV +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 71  EVCKQLREKK-ATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTA 129

Query: 121 GH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   L+++ DA  V   GH + LT KEY+++  L+   +    +E
Sbjct: 130 NSPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
             L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 190 QLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGY 237


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +K+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  IEVVKEVR-KDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +      +  ++  G L++N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QDQVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 240

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 17/235 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE----FDAIILDLGLTDI 57
           +LL +D+  +   +E+ L++E F V       DGI  L K  E     D  +LD  +  I
Sbjct: 8   VLLADDEVNIVTLLEMELQAEGFTVVT---ATDGISALKKLREPDTPVDLALLDWNMAGI 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++ R LR   +S PV I++    I+D++  L++GADD+ISKPFN  E++AR++A++R
Sbjct: 65  TGLDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIR 124

Query: 118 R--------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R        S   +  L+  G L++N   +T  + G  + LT +E+ +++         L
Sbjct: 125 RATFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQAL 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   + H++      +  ++DVF+  LRKKL  A G +  I+TV G G+ LR N
Sbjct: 185 SRGQLIQHVWGDDYFGDENVVDVFVRYLRKKL-EAGGSERVIQTVRGVGFALRMN 238


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|94312466|ref|YP_585676.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93356318|gb|ABF10407.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 234

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 127/236 (53%), Gaps = 15/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  +E  L      V V   G    +     + D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRQIASGVEAGLSRAGHQVRVVHDGVYATDHLLREQHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    +TPV IL+    +EDK+ GL +GADDY+ KPF   EL AR+R ++RRS+
Sbjct: 61  TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLVKPFALPELEARVRVLLRRSQ 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H ++     +  G L ++ + + + V G  + L+ +E+ ++ELL  R+   ++K    +
Sbjct: 121 -HGEAAPERDVRLGRLRLSGNDRRMFVDGRPLELSPREFAVLELLLQRQGRVVSKAQLQD 179

Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL        +G D      I+V++ ++RKKL +   G   I TV G GY+L+  A
Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLED---GDVEIVTVRGFGYLLQIRA 232


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD A+   +   L  E F V      EDG++ L +    D +ILDL L  + G+
Sbjct: 3   RVLVVDDDPAIREVLAAYLARERFEVLEA---EDGLQALEQAPGADLVILDLMLPGMDGW 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR      P+ +L+     E++VRG + GADDY++KPF+  E+VAR+RA++RR  
Sbjct: 60  RVAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRV- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +V G L +   A+ V ++G  + L+  E+ ++  L+       T+E  L  ++ 
Sbjct: 119 -GLKDELVYGPLVIRPRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E   +++DV +  LRKKL + A    +IETV G GY  RE+
Sbjct: 178 PGFEGVDRVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRFRES 221


>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  ++  + L L+   F V   + G  G+   +    D I+LDLGL D+ G E+
Sbjct: 7   ILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSGAEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121
            R +R    STP+ IL+    +  KV  L +GADDY++KPF+ EEL+ARIR  +R ++ G
Sbjct: 67  ARRVRKTS-STPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQNAG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            AQ++   GD+ ++++ + +      I L+ +E+ ++  L        T++    +++  
Sbjct: 126 SAQTV---GDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              P   ++DV I  +R KL + AGG   I TV G GY ++
Sbjct: 183 ELPPSSNVVDVHIANIRAKLRD-AGGYGLIRTVRGIGYAIK 222


>gi|212712243|ref|ZP_03320371.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
           30120]
 gi|212684989|gb|EEB44517.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
           30120]
          Length = 227

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L+  ++  L +  F V +   G    +L +   +  ++LD+ L  + G 
Sbjct: 6   MRMLLVEDHDELSLWLQKALAASGFAVDIASDGYIADQLLQTENYSLVVLDVSLPRMNGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R     TPV +L+  S + D+V+GL +GADDY++KPF+  EL ARIRA++RRS 
Sbjct: 66  DVLAQMRKRHQETPVLLLTANSDVADRVKGLNAGADDYLTKPFDIAELEARIRALLRRSH 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+       GDL  + +     ++   + LT +EY ++  L  R+   ++K      ++ 
Sbjct: 126 GNINESQCFGDLCFH-EEGYFSLKMEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFS 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE  ++ I++++ ++RKKL   AG    I T+ G GY L +
Sbjct: 185 LSDEANLQSIELYVHRVRKKL---AGSDVNINTLRGLGYRLEQ 224


>gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 231

 Score =  121 bits (303), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  I+  L++++  V V   G +G  L     FD +ILD+ L  + G E+
Sbjct: 9   LLVVEDETKVALFIKKGLETQSLTVTVAADGREGKRLISSERFDLVILDVNLPFVSGLEL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+ +L+ + S  DK+ G ++GADDY++KPF+  ELVAR+RA++RRS   
Sbjct: 69  AEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRRSAPP 128

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q ++   DL ++   K     G  I LT +E+ +++ L   +   +++      ++D
Sbjct: 129 EESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDIAEQVWD 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDV++  LR K+      K  I TV G GYVL+E
Sbjct: 189 VGFDTGTNVIDVYVNYLRNKIDKGEPVK-LIHTVVGFGYVLKE 230


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D++ +   ++  L+   F+V V+      IEL    + D ++LD  L  I G 
Sbjct: 1   MKILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGI 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++L+ +R  +     PV +L+  +  +DK++GL  GADDYI+KPF+ +EL+ARI  ++RR
Sbjct: 61  DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120

Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R    +Q +I  G++ +N D   + V G ++ LT KE+++++LL   +   L ++  L 
Sbjct: 121 YRISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E + +DV I  LRKKL      +N I+T+ G GY ++
Sbjct: 181 KVWGYEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKMK 226


>gi|294085650|ref|YP_003552410.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665225|gb|ADE40326.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 221

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED   LA S+      +  N  + +  +   EL     +D ++LD+ L D  G 
Sbjct: 1   MKILIVEDTAKLAKSLADHFTLQGHNADIAETVKLAEELRSLTHYDIMLLDIMLPDGDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR+LR  KIS P+ +++  S + DKV  L  GADDYI KPF+  EL AR RA++RR  
Sbjct: 61  TFLRSLRSQKISLPIIVMTARSEVSDKVDLLDIGADDYIIKPFDFAELEARCRAVLRRHT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +V GD+++N     ++       L  +E +++E+     +   TKE   + +++
Sbjct: 121 GTTQTQLVFGDIALNPLTAELQTPETSHMLRNRELRLLEIFMNAPDILFTKEQLTDRIFN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +      I+V+I ++RKKL    G   YI+T+ G GY L ++
Sbjct: 181 ISETISENAIEVYIARVRKKL---VGCNVYIQTMRGIGYKLTQS 221


>gi|291563054|emb|CBL41870.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 235

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDDK +++ I+ +L++ N++V V   G +   +      D +ILDLGL D+ G +
Sbjct: 6   RVLVVEDDKRISNFIKTVLEANNYDVIVAQTGAEAYSMVTSQCPDVVILDLGLPDMDGMK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ +R    + PV ++S  +   DKV  L  GADDYI+KPF   EL+ARIR  +R +R 
Sbjct: 66  ILQGVREWS-AMPVIVVSARTHERDKVEALDLGADDYITKPFGTSELLARIRTAIRHTRS 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G    +  +G L+++ D   V + G    LT  EY+++ LL       +T +  
Sbjct: 125 GIPNQPGGQTGVFKSGGLTIDYDKHRVFIDGVDAGLTQNEYKIVSLLGKYAGKVMTYDYI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  ++    + + +I+ V +  +R+K+        YI T  G GY + E
Sbjct: 185 IKEIWGPNMKNDNRILRVNMANIRRKIEKNPAEPQYIFTEVGVGYRIVE 233


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 230

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDK + + I L LK+  +N      G +G+ L    + D ++LDLGL D  G E
Sbjct: 5   RILIIEDDKYILNFISLSLKTSGYNFQCASTGLEGLSLFYSNKPDIVLLDLGLPDSDGIE 64

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +++++R  +IS  P+ ++S      DK+  L SGADDY++KPF+  EL+ARIR + R   
Sbjct: 65  IIKSIR--EISECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMN 122

Query: 118 RSRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R +   +  +   D L+++ + + V V  + IHLT  EY+++ L+   K   LT    L 
Sbjct: 123 RDKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   +  + K I VF+  LR+K+        +I T  G GY
Sbjct: 183 EVWGYGENGDSKSIRVFMASLRRKIEKNTAKPRFILTEVGIGY 225


>gi|291541568|emb|CBL14678.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 233

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   LK+ +++    + G   I     +  D ++LDLGL DI G +V
Sbjct: 6   VLVVEDDRPIRNLIVTTLKAHDYHYLTAENGHSAIIEATSHNPDIVLLDLGLPDIDGTQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           + ++R +  + P+ ++S  S  +DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IESIR-SWSNMPIIVISARSEDKDKITALDAGADDYLTKPFSIEELLARLRVTQRRLLLL 124

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G A S +   G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QASGDADSPVFQNGKLKIDYAAGCAYLNGEELHLTPIEYKLLCLLSHNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + VF+  LRKKL        YI+T  G GY
Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLEPQRDCPQYIQTHIGVGY 227


>gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
 gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
           29473]
          Length = 224

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILL+ED   L+H ++  L    F V   D+  DGIE   L +  ++  ++LD+ L  +
Sbjct: 1   MRILLVEDHPELSHWLQKALTHVGFAV---DVANDGIEADHLLQHEKYALVVLDVALPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+L  LR    + PV +L+  + + D+V+GL SGADDY++KPF  +EL ARIRA++R
Sbjct: 58  NGLELLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  Q  +  G L+ + D     +    + LT +E  ++  L  R+   + K+     
Sbjct: 118 RSVGVTQQALQFGSLTYH-DEGYFLLDNKPLALTPRESAVLTTLMHRRGRPVAKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   DE   + I++++ ++RKKL    G    I T+ G GY L  N
Sbjct: 177 IFTLSDEANPESIELYVHRVRKKLQ---GTDVAIITLRGLGYSLECN 220


>gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
           20583]
 gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +    + + + V     G++ IE  +    D I+LD+ +  + G E
Sbjct: 4   KILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTAP-DIILLDINMPQMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KIS P+  L+     ED+V GL SG DDYI KPF+ +EL ARI A ++R + 
Sbjct: 63  VCRKIR-DKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKREQR 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H+Q+      G+L ++   K V++    I  T  EY++IELLS        KE       
Sbjct: 122 HSQNTEFRFHGELCIDYGQKNVQINEEIIEFTKLEYEIIELLSTHPGQVFDKERIYEITC 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + ++I   I ++RKK+ N +  + YIETVWG GY
Sbjct: 182 GYDAEGDSRVITELIRRIRKKIGNYSDTE-YIETVWGMGY 220


>gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD++LA  IE  L+ E + V      E+G  L     FD IILD+ L D  G++
Sbjct: 3   KLLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINLPDGSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R A    P+  L+ +    + + GL+ G DDYI+KPF     ++RI+A++RRS G
Sbjct: 63  LCKHIR-ATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121

Query: 122 H-AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H A  +I+ +G ++V+  A TVE  G +I L+ +EY+++  L  R  T ++++  L  L 
Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +G +   +   + V+I +LR+K+ +      YI T  G GY
Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGY 222


>gi|332308798|ref|YP_004436648.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176127|gb|AEE25380.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 223

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  +A +I + L +    V       + I       FD  +LD+ L D  G 
Sbjct: 1   MKILLVEDDPIIADAICVYLGNAIMQVTHAATLSEAIHYVAVCSFDICLLDISLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ +R  K++ P+ +L+   +IEDKV+GL  GADDY++KPF+ EEL+ARI+++ RR  
Sbjct: 61  ELIKVVRKKKLALPIILLTAKDAIEDKVQGLNDGADDYVTKPFDFEELMARIKSVYRRFT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G+L  + ++K  ++   R+ L+  E +++       N  L +    ++LY 
Sbjct: 121 HQQNSYLQYGELKYDSNSKVAQLGDKRLALSASELKLLVAFLSNPNRILDENHLKDYLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     ++V +  LRKK+     GKN I T  G G+ L
Sbjct: 181 VNEDVSSNALNVHLFNLRKKV-----GKNIIVTERGLGFRL 216


>gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 244

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 15/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A +I   L +E +   V   G  G+E       DA++LD+ L  I G EV
Sbjct: 17  ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLPGIDGLEV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++ A+   P+ +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 77  CRRIQ-AERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 135

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           AQ+          +V GD+ ++   + V      IHLT  E++++ +L+    T  T+E 
Sbjct: 136 AQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRER 195

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++D  D    + +D  I  LR+KL     G + I TV G GY     A 
Sbjct: 196 LLAEVWDWADASGTRTVDSHIKALRRKL-----GADLIRTVHGVGYAFEPPAS 243


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 3   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR R
Sbjct: 62  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     +I+T++G GY L
Sbjct: 182 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EHIKTIYGVGYKL 223


>gi|209550917|ref|YP_002282834.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536673|gb|ACI56608.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 225

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLTEDNTALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L+++        + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVSFGGISFDLNSRAFSAGATPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218


>gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 231

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L  +I+  L  E    Y+ D  +DG E   + E     +   I D  L 
Sbjct: 1   MRVLLVEDEPDLGAAIQRTLTQE---AYIVDWAKDGREAWGYLESQWTQYTLAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G ++ + LR  +   PV +L+     ED   GL +GADDY+ KPF K EL+AR+RA+
Sbjct: 58  GLSGIDLCQRLRAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            RRS       +  G L+++     V +    QG  + LT KE+Q++E         +++
Sbjct: 118 QRRSPHFQPQQLQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSR 177

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  LN L+    +    ++   + +LR+KL+   G  + IETV+G GY L
Sbjct: 178 DQILNQLWGAEADTISNVVAALMRQLRRKLAE-LGCDDAIETVYGVGYRL 226


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ++   +   L  E ++V      E+ +++      D  I+D+ L  + GFE
Sbjct: 29  KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R LR  +   +TPV  LS      DKV GL+ GADDYI+KPF+  E++ARI+A+ RR 
Sbjct: 89  LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  AQ        IV   L ++++   V+V   ++ LT  E++++  L+  +    ++++
Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 263


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 140/228 (61%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELM---LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           IL+IED+   AH +EL+   L+++ +NV +TD G++G+E C+    D ++LDL L DI G
Sbjct: 5   ILVIEDE---AHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDIDG 61

Query: 60  FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            +V + ++  +   + P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+ARI+ ++R
Sbjct: 62  IDVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLR 121

Query: 118 RSRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS+   +   +I  GD++++ +   V      + LT KE+++++LLS  +   LT++  L
Sbjct: 122 RSKNETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      E + +DV I  LRKK+ +      YIETV G GY L++
Sbjct: 182 DKVWGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229


>gi|17547783|ref|NP_521185.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17430088|emb|CAD16773.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 243

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L +  F V V   G+  +   + +    +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDIAVAAVREHRPALVILDLMLPHMDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVAS 127

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +          +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 AMPAAEPATPRDDTLVFGELAISPPNRTVTWRGQPVELKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +E
Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
 gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
          Length = 232

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+        ++    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPVLQVDKLQLNPGRQEASFDDEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 133/223 (59%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL+ +R  K ST P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR  
Sbjct: 67  VLKWIR--KDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  +
Sbjct: 125 VDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEV 184

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           + G D P + + +DV I +LR+KL    GG N+ IETVWG GY
Sbjct: 185 W-GYDYPGDSRTVDVHIKRLREKLE---GGSNWEIETVWGVGY 223


>gi|152990660|ref|YP_001356382.1| two-component response regulator [Nitratiruptor sp. SB155-2]
 gi|151422521|dbj|BAF70025.1| two-component response regulator [Nitratiruptor sp. SB155-2]
          Length = 222

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           M IL IEDD  +   I+   ++EN +V  T   E+GI   E+   Y  DA+ILD  L D 
Sbjct: 1   MYILCIEDDSEIQKIIKENFRNENIDVEFTYSLEEGIYKLEMNSLY--DAVILDRVLPDG 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L+ +   +I+ P  ILS + S+E+K+ GL  GA DY++KPF+  EL+ R++ I++
Sbjct: 59  DGITLLKYMEQKQINIPCLILSVLGSVENKIEGLSLGAYDYLTKPFDIRELLIRVKNIIK 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++  G++S+NL ++ V V+   I LT +EY++++LL   +N  + K   ++ 
Sbjct: 119 IRYNIQTNIVRIGNVSINLFSRKVYVKDKNIKLTPQEYKILKLLMTNRNKVIEKSEIMDR 178

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L   ++E     I+DV + +LRKKL    G +++I+ +   GYV+
Sbjct: 179 LGIEQNESHNSNIVDVLVYRLRKKL----GKQDFIQNIKKIGYVI 219


>gi|150018489|ref|YP_001310743.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904954|gb|ABR35787.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD  + + +   LK   + + +++ G DG+   +   +D +ILDL L    G E
Sbjct: 4   RISIIEDDLEICNLLREFLKESGYEIKISNTGIDGMRELRTLTYDLVILDLMLPYKSGDE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR    + PV +LS    +  KV  L+ GADDY++KPF+  E++AR+ + +RR   
Sbjct: 64  ILRELRSFS-NIPVIVLSAKDMVHTKVDLLRLGADDYVTKPFDLNEILARVESNLRRCSS 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S++   D+++  + K V V G+ + LT KEY ++ LL        +K      +
Sbjct: 123 DLNIKKSILTYKDITLYEEEKKVIVNGNTLVLTSKEYGILFLLLSHPQKVFSKANLFESI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     E   ++V I  +R KL +A   + YIET+WG GY L+
Sbjct: 183 WNEEYFSEDNTLNVHISNIRNKLKSANANEEYIETIWGMGYKLK 226


>gi|134098396|ref|YP_001104057.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291006902|ref|ZP_06564875.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911019|emb|CAM01132.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 233

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ LA +I   L+ E   V +   GE G E      +D I+LD  L  + G 
Sbjct: 11  VRILVVEDEQPLADAIARGLRREGMAVDIAYDGESGQEKASITRYDVIVLDRDLPGMSGD 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R++  +   T V +L+   ++ D+V GL  GADDY++KPF   EL AR+RA+ RR+ 
Sbjct: 71  ELCRSVVTSGQLTRVIMLTASGTVADRVEGLSLGADDYLAKPFAFAELTARVRALGRRAT 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL+++   +TV   G  I LT KE+ ++E+L       ++ E  L  ++D
Sbjct: 131 PAVPPLLTARDLALDPARRTVSRSGGEIELTRKEFGVLEVLLGAGGAVVSSEELLERVWD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LRKKL    G    I+TV G GY
Sbjct: 191 ENADPFTTTVRVTMMTLRKKL----GEPGVIDTVVGSGY 225


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+ ++A  ++  L+   F V     G  G++L +  +   I+LDL L ++ G E
Sbjct: 4   KIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMNQ 123

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I+ GD+ +  D         R+ LT KE++++  L+  K   LT++  L
Sbjct: 124 QTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +++     + +I+DV I  +R+K+        YI+T+ G GY + E
Sbjct: 184 SAIWNYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEE 231


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L   +   L+ + + V     G  G +  +   +D I++D+GL    G 
Sbjct: 1   MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +++   +  D++ GL +GADDY++KP +  EL AR+RA++RR  
Sbjct: 61  TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L ++  +  V      ++LT KEY ++EL         ++   + HL+ 
Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
             D P  + +   +  LR+KL  AAG  ++IE ++G GY  R N  D   +  ++A
Sbjct: 181 FDDPPLEESVKAHVKGLRQKL-KAAGAVDWIENIYGIGY--RLNPPDSEQKSSDSA 233



 Score = 44.7 bits (104), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 8/125 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDI 57
           + +LL++DD      I L+L+   + +++T +  + +EL         D +ILD+ +   
Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQP--WGIHLTGIN-NPLELWSVLPSTRPDLLILDVEMPQT 436

Query: 58  PGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            G E+ ++LR      S P+  L+     E   +    GADD+++KP    EL+ RI   
Sbjct: 437 SGIELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINR 496

Query: 116 VRRSR 120
           + R+R
Sbjct: 497 LERTR 501


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A   +  L+   F V V + GE G+E     E+   ILDL L  + GFE
Sbjct: 3   KILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKKIREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   + + L+ E F+V   + G  G+++ +    D +ILD+ + ++ G+E
Sbjct: 8   RILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGWE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +  +D V GL+SGADDY++KPFN +EL ARIRA++RR   
Sbjct: 68  VCRRLREFS-QMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++   G++ ++   + V V+G  + LT  EY ++ LL+      L  E  L  ++ 
Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + V+I  LR+K+         + T WG GY L
Sbjct: 187 HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 120/232 (51%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58
           +IL+++DD  +   +   L  E F V    L ED   L +    DA   I+LDL +    
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFEVI---LAEDSKALNRIMLRDAVDLIVLDLMMPGED 68

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY++KPFN  EL+ARI A++RR
Sbjct: 69  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRR 128

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +    Q +I  G  S ++  +T+   G  + LT  E+ M++ L       L+
Sbjct: 129 RPTAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLS 188

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 189 REK-LAQLARGREFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVF 239


>gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia
           pseudotuberculosis YPIII]
 gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis]
 gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia
           pseudotuberculosis]
 gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 223

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRGQGY 218


>gi|29827189|ref|NP_821823.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29604287|dbj|BAC68358.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 228

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  +++L L  E F V + + GE+ +E         I+LD+ +  + G EV
Sbjct: 1   MLVVDDDPGVREALDLGLGLEGFTVRLAEDGENALEQVADRLPSVIVLDVTMPGLSGVEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +++LR    + PVC+LS    ++D+V GL + ADDY+ KPF+  EL AR+ AIVR     
Sbjct: 61  VQSLRAQGRTLPVCMLSARDEVDDRVAGLAARADDYVVKPFSIAELAARLHAIVRLHAIV 120

Query: 120 RGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R H  + +   V GD+++    +     G  +HLT +E+ ++  L+ R    L++   L 
Sbjct: 121 RLHESTAVRPLVIGDVTIEPARRVAARAGRDLHLTTREFDLLLALAHRPGQVLSRAQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    + +  ++DVFI  LRKKL  A G    ++TV G G VLR
Sbjct: 181 QVWGYTWDVDTNVVDVFIGYLRKKL-EADGRPRILQTVRGIGLVLR 225


>gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae]
          Length = 250

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           L+ +   + + ++  L  E F+  +   G   + L +   FD I+LD+ L  + G EV +
Sbjct: 22  LVHNSCXILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCK 81

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122
            LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G   
Sbjct: 82  RLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQE 141

Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A    + G L V  +   V      + LT KE++++  L    N TLT+E  L
Sbjct: 142 GDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 202 ERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 249


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G  G E  +   +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSG 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     ++  DL ++ + +    QG  I L+ KE Q+++         +T    + 
Sbjct: 121 SQTYETTTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIME 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +L+   ++P   +I   I  LR+K+         I TV+G+GY
Sbjct: 181 NLWQEEEQPSSNVIAALIRLLRRKI-EVGKETTLIHTVYGKGY 222


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL +ED+ A+   +   L+ E +NV   + G   ++      FD IILD+GL D  GFE
Sbjct: 6   QILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+  L+      D+V GL+ GADDY +KPF+  E+VARI+AI RR   
Sbjct: 66  VCKQLR-QKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124

Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            AQ++            + +   + N  +  ++  G  + LT  EY+++ LL        
Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  ++H+++  +    + +D  I  LR+KL       + I T  G GY L
Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236


>gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
 gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia
           aldovae ATCC 35236]
          Length = 223

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDTKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   +  E   IDV + +LRKKL     G+  I T+ G+GY    N
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQGYRFDAN 223


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++++A  +  +L+ E F+  +   G D +E       D ++LDL L  + G E
Sbjct: 3   RVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  + + PV +++   S  DKV GL+ GADDYI+KP++  EL+ARIRA++RR   
Sbjct: 63  VCKQLR-GRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGAD 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H+  ++  G + +++D   V V G    L  KE+ ++E L       LT+   ++ 
Sbjct: 122 ADDAHS-PVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        Y+ TV G GY L
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKL 224


>gi|254437616|ref|ZP_05051110.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198253062|gb|EDY77376.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 221

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ LL+ED+  LA++I   +  +   V       D I   +  E+D I+LD+ L D  G 
Sbjct: 1   MKYLLVEDNLELANAICSRIGLDGHTVDHAARMADAIAFAQTGEYDLILLDIMLPDGDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+  R AK  TPV +L+  S + D++  L  GADDY++KPF+  EL AR RA++RR  
Sbjct: 61  SFLKQHRAAKNDTPVIVLTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRAVLRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +Q+ I  GD+  +     + V+G+ I+L  +E +++E+L   K     K+  ++ LY 
Sbjct: 121 GASQTTIKVGDVEFDPVGGHLTVKGNVINLRNRELRLLEILMNAKGQVFHKQKLVDRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V++ +LR+ L    G    I T+ G GY L
Sbjct: 181 YDDDVSENAVEVYVGRLRRHLE---GSAVQITTLRGLGYRL 218


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   + + L+ E F+V   + G  G+++ +    D +ILD+ + ++ G+E
Sbjct: 8   RILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGWE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +  +D V GL+SGADDY++KPFN +EL ARIRA++RR   
Sbjct: 68  VCRRLREFS-QIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++   G++ ++   + V V+G  + LT  EY ++ LL+      L  E  L  ++ 
Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + V+I  LR+K+         + T WG GY L
Sbjct: 187 HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGF 60
           R+L++EDD A+   +E  L  E         GE  +EL      FD ++LD+ L  + G 
Sbjct: 3   RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62

Query: 61  EVLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            V R LR +     + PV +L+        V GL+ GADDYI+KPF+  +L +R+RA +R
Sbjct: 63  SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122

Query: 118 RSRGHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R R +AQ+      L   G L ++L  + V  +G ++ LT +E++++ LL+       ++
Sbjct: 123 RQRMNAQASPEQRKLEFPG-LEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  ++HL+ G    E +  DV I  LR+K+        YI+TV G GY   E
Sbjct: 182 EQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233


>gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 227

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/232 (34%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  +EL LK   F V     G +G+   +  + D ++LDLGL D+ G E
Sbjct: 3   RILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGLPDLDGAE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TP+ +L+   ++E KV  L  GADDY+ KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIR-ATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARIQVQLRHKEG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
               ++  G L +    + V      + L+ KE+ ++ LL  R      +E     ++  
Sbjct: 122 --SEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWGK 179

Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             GRD     ++DV +  LR KL   AG   Y+ TV G GY +R    +E  
Sbjct: 180 PLGRDS---NVLDVHVANLRAKLRE-AGAYGYLRTVRGLGYAVRPGRGEEET 227


>gi|319762606|ref|YP_004126543.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330824696|ref|YP_004387999.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317117167|gb|ADU99655.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310068|gb|AEB84483.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 227

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +  +++  L      V     G   +   + +  DA++LDL L  + G 
Sbjct: 1   MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL   R   + TPV +L+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRRS 
Sbjct: 61  QVLEQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRRSG 120

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A S +  G +S   ++  +   G  + LT +E  ++  L  +    +TKE   
Sbjct: 121 DAMEAKSAASALAMGAISYEKESGIIYAHGAPMDLTPRELALLRALLAQPGHAVTKERLY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++ G+ E + + I+V   +LRKKL   AG    + T+ G GY+L+  A
Sbjct: 181 ELVFPGQSEVQYEAIEVVAYRLRKKL---AGTGVVLMTLRGLGYLLKPEA 227


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E+ L+ ENF N+     G+D ++L K   +D I+LD+ L DI GF
Sbjct: 6   KILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDISGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R    +TP+  +S  S+  DK+ GL  G DDYI+KPFN  E+VARI+ I+RR +
Sbjct: 66  ELCTEIR-KHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124

Query: 121 ----GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                H Q  S    G  ++N ++ T+ V    +  T KE +++       N   T    
Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              ++      E K + + I KLRKKL +       I  + G GY      +D  CE
Sbjct: 185 YEFVWGNDVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPKEDSLCE 241


>gi|319936869|ref|ZP_08011281.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319808137|gb|EFW04709.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+K +   IE+ L  E ++V         +E  + Y+ D +ILD+ + +I G + 
Sbjct: 6   ILVIDDEKEITDLIEIYLSQEGYHVEKRYNALTLLEDIRTYQIDLVILDVMMPEINGIQA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ +R  K + PV I+S  ++  DK+ GL +GADDY+SKPFN  ELVAR+++ +RR +  
Sbjct: 66  LKMIR-EKYNIPVIIVSAKTADNDKIEGLLTGADDYVSKPFNAMELVARVKSQLRRFQVF 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I   DL ++   K+V +    + LT  EY+++ LL+ +  T  + E    
Sbjct: 125 NKPINDSSHIIEASDLIIDTQKKSVTLDNQSLALTRIEYEILVLLASQPGTVFSIEDIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       I V I KLR+K+        +I+TVWG GY
Sbjct: 185 KIWHEKSTNSNNTIMVHIRKLREKIERQPRNPRHIKTVWGIGY 227


>gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica]
          Length = 231

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E  NV +   GE  ++L      D ++LD+ +    G  
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLD-ESIDLLLLDIMMPRKNGIA 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR+    TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRLHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q       + +   +L +N   +        + LTG E+ ++ LL+      +++E  
Sbjct: 121 SEQQQTDNSPATLQVDNLQLNPGRQEASFANQILDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPEREDGQPWFKTLRGRGYLM 227


>gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V G  + LT  EY+++  L       +++   + HLY+
Sbjct: 121 GHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVEHLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKK+       + I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIDC-----DVIQTVRGLGYLL 216


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 7/220 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +++ ++L L   N+       GE G+      +++ I+LDL L  I G EV
Sbjct: 2   ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR+ K  TP+ +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR    
Sbjct: 62  CRQLRLKK-QTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVSNQ 120

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +SL    G++ +++    V+ +   I LT  E+ ++ LL       +TK   LN ++  
Sbjct: 121 NKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  +++V+I  LR KL+    G N IET+ G GY L
Sbjct: 181 EKNVSTNVVEVYIRYLRNKLA----GIN-IETIRGIGYRL 215


>gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
          Length = 234

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 235

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD+ LA  I   L+S    V V   GE G+     + +D I+LDLGL    G 
Sbjct: 7   IHILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGLPGRDGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR      P+ I +      DKV GL+ GADDYI+KP++  EL+ARIRA  RR R
Sbjct: 67  SVCQQLR-GHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMR 125

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      +++  G L +  +A    +   R+ LT  E+ ++  L+      L++E  +  
Sbjct: 126 GQVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMEL 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                D+   + +DV I +LR+KL + +     I TV G GY
Sbjct: 186 ARGSSDDAFDRSVDVHISRLRQKLGDNSRPVKMIRTVRGAGY 227


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 29  HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 89  ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 208 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 243


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 131/228 (57%), Gaps = 14/228 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +ILL+EDD+ ++  I+L L+ E F   V     DGI  C+ +   ++D ++LDL L  + 
Sbjct: 5   KILLVEDDENISKIIKLYLEKEGF---VVSCCYDGIVACETFLKNKYDLVLLDLMLPGLD 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++V + +R     TP+ +L+    +E+KV+GL  GADDY++KPF   EL+ARI A++RR
Sbjct: 62  GYQVCQKIRETS-YTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120

Query: 119 -SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             + H +      + +   +L  ++DA  + +    I++  +E Q+++ L +  N    +
Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  +  ++    E E ++ID++I +LRK+L +       I+TVWG GY
Sbjct: 181 EELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGY 228


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++ + H I + L++  F+      G++ +E  +    D I+LD+ +    GF
Sbjct: 7   LEILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V   +R A+   PV  LS      DKV+GLQ G DDYI KPF+  EL ARI A++RRS 
Sbjct: 67  SVCERVR-AQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSG 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G   ++   G ++++  A++V+V+G  I LT KEY+++      ++  L++E  L  
Sbjct: 126 SISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++       ++ +D  I  LR KL    G  +YI+TVWG GY
Sbjct: 186 IWGMDYLGSLRTVDTHIKTLRMKL----GAGDYIKTVWGIGY 223


>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
 gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 232

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+  +      ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|326317092|ref|YP_004234764.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373928|gb|ADX46197.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 242

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 14/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M++LL+EDD A+  +++  L      V  T LG+    L ++     DA++LDL L  + 
Sbjct: 14  MQLLLVEDDPAMQATLQRSLARRGMEV--TALGDGRAALAQWASRPPDAVVLDLSLPGLD 71

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+  R + + TPV +L+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA+VRR
Sbjct: 72  GLQVLQQARASGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALVRR 131

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A S +  G +    D+  +   G  + LT +E  ++  L  +    + K
Sbjct: 132 LGDLSEARPAAAPSTVSIGAIRYEKDSGAIYRDGEVMELTPRELALMHALLAQPGHAVAK 191

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E     ++ G+ + + + I+V + +LRKKL   AG    + T+ G GY+LR +A
Sbjct: 192 ERLYELVFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLRADA 242


>gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  121 bits (303), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +   ++  L+   +++ V+  G DG+   +   ++ ++LDL L    G E
Sbjct: 4   KILIIEDDLEICSLLKEFLEESGYDIKVSHTGIDGMRELRTLNYNLVLLDLMLPFKSGDE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR      PV ILS    +  KV  L+ GADDY++KPF+  E++ARI + +RR + 
Sbjct: 64  ILRELRSFS-DIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++   D+++N + K V V G+ + LT KEY ++ LL        +K    
Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E   ++V I  +R KL +A   + YIET+WG GY L E
Sbjct: 183 ESIWKEEYFSEDNTLNVHISNIRNKLKSANPNEEYIETIWGMGYKLHE 230


>gi|292670812|ref|ZP_06604238.1| two component response regulator [Selenomonas noxia ATCC 43541]
 gi|292647433|gb|EFF65405.1| two component response regulator [Selenomonas noxia ATCC 43541]
          Length = 225

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL EDD  L   I+ ML+  + +V +VTD G D      + E+D +ILD  +    G
Sbjct: 1   MRVLLAEDDMRLGKLIQYMLEQNDIDVEWVTD-GNDIYSYATYAEYDILILDWMMPGETG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E    LR       + +L+   ++ED+V GL +GADDY+ KPF   EL+AR+RA+ RR+
Sbjct: 60  VEACARLRRNGYDRAILVLTARDAVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRT 119

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ +
Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +     ID ++  LRKKL +AAG  + I+T+ G GY L
Sbjct: 180 WGLESDVSSNNIDSYMKMLRKKL-DAAGEGSVIKTIRGVGYKL 221


>gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115]
 gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 227

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A  +   ++   + V        G+   +    D +ILDLGL D+ G EV
Sbjct: 5   ILVIEDDPDIAQILTTEIEDAGYRVLTAPNRMSGLTCARSEAPDLVILDLGLPDMHGTEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+GM ++  KV  L++GA DY++KPF+ EELVAR+R  +R+   H
Sbjct: 65  ARRLRRTS-RTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLRK---H 120

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q+  V+ G L + L  +    QG  + L+ KE++++ LL+       ++++ +  L+ G
Sbjct: 121 QQAGEVSVGALKLYLQQQVCLYQGREVRLSPKEFELLGLLAEVPGRVYSRDVIVAELWPG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +    +++V +  LR KL    GG   + TV G GY LR+
Sbjct: 181 VVDVGRSVVEVHMANLRSKLRE-VGGAGVLRTVRGVGYALRD 221


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S            +  TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+        Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 129/228 (56%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++ +   +++ L+ EN+ +   D G+D +E     ++D I+LDL L    G 
Sbjct: 7   VKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 67  EVCKGIREKK-ATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 125

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   L+++ DA  V V G  ++LT KEY+++  L+   +    +E
Sbjct: 126 NTAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
             L  ++      +++ +D  I +LR+KL+  +      I TVWG GY
Sbjct: 186 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGY 233


>gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180

Query: 181 GRDEPEVK--IIDVFICKLRKKL 201
             ++ ++    + ++I  LR+KL
Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203


>gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK++ FNV  +   +D   L K  + D +ILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNDGFNVINSYTAKDA--LNKLNDADLVILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ ++ G + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +DV I +LR+KL +    K  I+TVWG GY L E
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSE 218


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G++ ++     E + +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWD-EEPNVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVM 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H       +I  G+L +    + V V G  I LT +E+ + +L +  K     ++  L 
Sbjct: 120 KHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  A+G   +I+T++G GY L
Sbjct: 180 KVWGFEYSGNTRAVDIMVQRLRKKLG-ASG--EHIKTIYGVGYKL 221


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD A+   +   L +E   V     G++   L      D  ++D  L    G  
Sbjct: 3   RVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALLP--RADVAVMDWMLPGAAGPV 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R A +  P+ +L+     EDK+ GL+ G DDY+ KPF+  E+VAR+RA++RR   
Sbjct: 61  LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGV 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    + +  L+++L  +TV V G  + L+  E+ ++  L+L      T+E  L  L+ G
Sbjct: 121 HQD--VRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLW-G 177

Query: 182 RDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            D P   +++DV I  LRKKL +      YIETV G GY  RE  
Sbjct: 178 PDFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRFRERG 222


>gi|255280825|ref|ZP_05345380.1| KDP operon transcriptional regulatory protein KdpE [Bryantella
           formatexigens DSM 14469]
 gi|255268762|gb|EET61967.1| KDP operon transcriptional regulatory protein KdpE [Bryantella
           formatexigens DSM 14469]
          Length = 233

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+ ++       G   I     +  D I+LDLGL D+ G EV
Sbjct: 6   ILVVEDDAPVRNLITTTLKTNDYRYLAAVNGATAILEASSHNPDIILLDLGLPDMDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +  + P+ ++S  S   DK++ L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IENIR-SWSNLPIIVISARSEDTDKIKALDAGADDYLTKPFSVEELLARLRVTQRRLSFM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S+ V G L V+       + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 SAEMLSASSVFVNGKLKVDYVGGCAYLDGQELHLTPIEYKLLCLLSKNVGKVLTHTFLTQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    + +V  + VF+  LRKKL   A    YI+T  G GY
Sbjct: 185 NIWGRSWDNDVASLRVFMATLRKKLEPDADSPQYIQTHIGVGY 227


>gi|186477801|ref|YP_001859271.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184194260|gb|ACC72225.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 228

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV +L+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQSNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL N    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLENC---RVEIVTVRGFGYLLQE 223


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K L   I+  L+ E +  +    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ LR + ++ P+ +L+      DKV GL+ GADDYI+KPF+  ELVAR++A +RR   
Sbjct: 64  VLKTLRQS-MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  Q+ I+   +L +++    VE     I LT +E++++  L L K    ++E  L  +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +++ +DV I +LR+K+ +      +I T  G GY
Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGY 223


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   + + LK + + V     G   +++ + ++ D ++LD+ +  + GF 
Sbjct: 9   KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR   I  P   LS   S+EDKV GL  G DDY++KPF+ EE+VAR+  ++RRS  
Sbjct: 69  LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + IV  DL ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G K  I T+ G GYV+RE
Sbjct: 189 VWSYDFGGDVNVVESYVSYLRRKVDT--GPKRLIHTLRGVGYVMRE 232


>gi|253998110|ref|YP_003050173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
 gi|253984789|gb|ACT49646.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
          Length = 226

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L    F   VTDL +DG++   +     +D IILD+ L   
Sbjct: 1   MRILVVEDEHKTGEYLRKGLTEAGF---VTDLIQDGLDGQHMALAEHYDLIILDVMLPRA 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++++ ALR A   TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++R
Sbjct: 58  SGWQIIAALRKAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R     ++   +L V++  + V+  G +I LT KE+ ++ELL  R+   L++ +  + 
Sbjct: 118 RGRTREADVLQVANLEVDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 178 VWDMNFDSDTNVIEVAMRRLRAKIDDPFEPK-LIHTVRGMGYVL 220


>gi|197336815|ref|YP_002157801.1| transcriptional regulator [Vibrio fischeri MJ11]
 gi|197314067|gb|ACH63516.1| transcriptional regulator [Vibrio fischeri MJ11]
          Length = 228

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED + L  S+ + L +  F V  T  G  G+ +    ++D IILDL L ++ G 
Sbjct: 1   MKILLIEDSEHLRRSLIVGLSNLGFTVDETGDGSKGLSMAITNDYDFIILDLMLPNVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+++R       V ILS  S  ED+V GL SGADDY+ KPF+ +EL ARI  + RR +
Sbjct: 61  TLLKSIRKMGNDVKVIILSAKSQPEDRVEGLMSGADDYLVKPFSFDELHARILTVGRRGQ 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   I  G   ++L  KT+E     I LT  EY++IE L L KN  +T E   +++ 
Sbjct: 121 VKNSDDDISIGLFKLDLAKKTLEFDTKFIDLTKNEYKIIECLFLSKNQVMTTENISDYVV 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D      I+  +  +RKK+  A GG+  ++   G GY + ++A
Sbjct: 181 GSFDSLSKNTIESHLSSVRKKV-KALGGELPVKNKRGFGYYVEKDA 225


>gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 247

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L++EDD  +A  I   L+ E + V ++  G   ++  + ++ D ++LDLGL    G 
Sbjct: 19  VRALVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGLPGQDGI 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    +  V +L+  +   D + GL  GADDY++KPF+  ELVAR+RA+ RR R
Sbjct: 79  EVCRQLRTFSDAY-VVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPR 137

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  +L   G L+++   + V +    + LT  E+ ++ +LS R     ++   +
Sbjct: 138 PIDGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLI 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ G    +  ++DV I  LR+KL + AG   +I TV G GY
Sbjct: 198 DQVWGGTWVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGY 241


>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 132/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++DD  L   +   L+++ F V   + G+  +  L +  EFD ++LD+ +  + G 
Sbjct: 7   KILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMPGMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R AK  TP+ +L+G     D++ GL+ GADDY++KP N  EL ARIRAI+RR++
Sbjct: 67  DVLRNVR-AKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125

Query: 121 -GHAQS-LIVTGDL-SVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G+A +  +V  +L  + LD  A+T  V    + LTG E+  + LL  R   T+TK+   
Sbjct: 126 NGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEMT 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + +   E   + +DV + ++R+KL+ A G  + I++V G GY
Sbjct: 186 EEVLNRPLEAYDRAMDVHVSRIRQKLT-AVGINDVIKSVRGVGY 228


>gi|319796195|ref|YP_004157835.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315598658|gb|ADU39724.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 257

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD+ LA  +          +       +G+   +  ++DA ILD+ L ++ GF 
Sbjct: 25  RILLIDDDEHLAAPLTTYFARFGCTLESAVRPSEGLAKLRAGQYDAAILDVMLPEMDGFA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  +   P+ +L+    + D+V GL+ GADDY+ KPF   ELVAR++ I+RR R 
Sbjct: 85  LCREIR-KESDIPIVMLTARGEVTDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 143

Query: 121 ------GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 GH  +   L V   LS++LD + V  QG R+ LTG E++++ LL+       ++
Sbjct: 144 TPAVANGHGNNGTQLRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAAEPGKVFSR 203

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  LN L     E   + +D+ + +LRKKL       + I+T+   GY L
Sbjct: 204 DDILNRLRGHEAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNAGYAL 249


>gi|209517424|ref|ZP_03266266.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209502191|gb|EEA02205.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 224

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++EDD  +  S+   L+   ++V +V D G  G       E+  ++LDLGL  + G
Sbjct: 1   MRVLIVEDDLQIGQSLLRALQDAEYSVDWVRD-GNAGSAAIAAVEYTLVLLDLGLPGMGG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L++ R      P+ IL+    ++ +V+GL  GADDY+ KPF+  EL+ARIRA++RR 
Sbjct: 60  IELLKSSRDKGSKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S +    L+++LD +T+   G    L+ +E+ ++     R  T L+++     LY
Sbjct: 120 AGFASSRLGNDTLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +DV I  +RKK      G++ I  V G G+ +
Sbjct: 180 GWGKEVESNAVDVLIHGVRKKF-----GQSVIRNVRGLGWTV 216


>gi|73543071|ref|YP_297591.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72120484|gb|AAZ62747.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 15/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  +E  L      V V   G    E     + D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRQIASGVEAGLTRAGHQVRVVHDGVYATEHLLREQHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    +TPV IL+    +EDK+ GL +GADDY+ KPF   EL AR+R ++RRS+
Sbjct: 61  TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLVKPFALPELEARVRVLLRRSQ 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H +++    +  G L ++ + + + + G  + L+ +E+ ++ELL  R+   ++K    +
Sbjct: 121 -HGEAVPDRDVRLGRLRLSGNDRRMFIDGKPLELSPREFAVLELLLQRQGRVVSKAQLQD 179

Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL        +G D      I+V++ ++RKKL  +      I TV G GY+L+  A
Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLEES---DVEIVTVRGFGYLLQARA 232


>gi|158317452|ref|YP_001509960.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112857|gb|ABW15054.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 220

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ ED+  +A  IE  L++  F       G   +E+    E D I+LDLGL D+ GF 
Sbjct: 4   RVLIAEDEYRIASFIEKGLRANGFLPVCVGDGASALEVALRGEVDLIVLDLGLPDMDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A +  PV +L+    + D V  L+ GADDY+SKPF  EEL+ARIR  +R  R 
Sbjct: 64  VLRRLRGAGVDVPVVVLTARDGVRDTVAALEGGADDYMSKPFRFEELLARIRLRLRADRA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++    +S++L  +  +V G  + LT +E+ + E         L +E  L+ ++  
Sbjct: 124 PEATVLRVRGVSLDLRTRRAQVGGRTVDLTAREFVLAETFLRHPGQVLAREQLLSAVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DV++  LR+K+     G + I TV G GY L
Sbjct: 184 DYDPGSNVVDVYVGYLRRKI-----GADCITTVRGMGYRL 218


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + LK + F V   + G+  +E+ +  + +A ILD+ +  + GF
Sbjct: 10  VKVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   +  PV  L+   ++ED++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 70  ELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 129

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S I   DL++N D   V   G  + L+  E+ ++  L L     L+K   L+
Sbjct: 130 VTETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILD 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 190 NVWHYDFGGDGNVVESYISYLRRKVDQ--GEPQLINTVRGVGYVLR 233


>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +I L EDD  +A  I+  L+ + + +     G+  +E      FD +ILD+ +  + G 
Sbjct: 2   FKIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R LR +  + P+ +L+ +S+++DKV GL++GADDY++KPF+ +EL+ARI A++RR  
Sbjct: 62  ELCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRRYS 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                + H   L    ++++N  +K V+  G  I LT KE+ ++EL     N  L+++  
Sbjct: 122 TGTIQKQHQHELTFE-NITLNTYSKEVKRAGINIELTAKEFTLLELFLRNPNRLLSRQYI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +D   +    +IDV++  LR K+      K  I T    GY+L+
Sbjct: 181 AENAWDINFDTGTNVIDVYVNFLRNKIEKGFDRK-VIHTKINMGYILK 227


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ + + ++  ML+ E F V V + G D ++       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R A  S PV +++      DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQIR-ATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G + ++++   V V G+   L  KE++++E+        LT+   ++ ++
Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV + +LR KL        ++ TV G GY L
Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKL 223


>gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
          Length = 234

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 264

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  +  + + E +       G D +     +  D ++LDL L D  GF
Sbjct: 38  VRLLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLMLPDFDGF 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    + PV  L+   +  D++ GL  G DDY+ KPF+ EEL+AR+RA++RR+ 
Sbjct: 98  TVLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTS 157

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  V+   GDL+++ +   V   G    LT  EY+++  L       LTK   L+H
Sbjct: 158 EKPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDH 217

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++        ++++ I +LR+KL   A  +  I TV G GY +R+  +
Sbjct: 218 VWEYDFGGRSNVVELAISRLRRKLDAEA--EPLIHTVRGVGYSVRQAGR 264


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+  +I+  L++E F       G   I     +  D +ILD+GL DI G E+
Sbjct: 5   ILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIGGLEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  L+  +   D++ GL+ GADDYI+KPF+  E+ AR++A++RR+   
Sbjct: 65  CRLIRQTS-SVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTSNP 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             ++   G  SVN   + +   G  + L+  EY+M++    R     ++E  +  +++  
Sbjct: 124 GNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWENP 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + ID  I  +R KL      +  I T  G GY LR++
Sbjct: 184 ECSLDRTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYALRDD 225


>gi|91787344|ref|YP_548296.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91696569|gb|ABE43398.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ AL   +   L+     V   D G         +++DA++LDLGL    G 
Sbjct: 1   MRILLAEDEHALGEWLTKALEQSGNRVDWRDDGRLVERALVDHDYDAVVLDLGLPGRSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR      PV IL+   S+ D+V  L  GADD+++KPF   EL AR+ A+VRR+R
Sbjct: 61  EILRRLRAQDKRLPVLILTARDSLADRVNALNEGADDFLAKPFALAELEARLTALVRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G        G L  +  ++   +    + L+ +E+ +++ L  R    L+++  ++ ++ 
Sbjct: 121 GSEHPRFACGPLLFDTVSRQFTLGSENLPLSPREHALLKALIQRSGEPLSRQQVMDRVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +IDV + +LRK+L ++      I+T  G GYVL
Sbjct: 181 DEEDVQPSVIDVLVHRLRKRLDHSG---VRIQTYRGLGYVL 218


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E F+    + GE  IEL    + D I+LD+ L  + GF 
Sbjct: 4   KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + ISTP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRES-ISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  GDL ++++   V      I LT +E+++++ L+L+     ++E  L
Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +V+ +DV + ++R+K+        YI T  G GY
Sbjct: 183 EKVWGYEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGY 226


>gi|330964376|gb|EGH64636.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+ + PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQNVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218


>gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ +  S+   L++E F       G D       +  D ++LD  +    G  
Sbjct: 6   RVLVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMMPGPAGIR 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R A+  T V +L+    ++D++RG   GADDY++KPF   ELVAR  A++RR RG
Sbjct: 66  LLPVIR-AEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRR-RG 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GDL V+ DA      G  + LT  E+++++LL+  +  TL+K   L  ++ G
Sbjct: 124 RLPQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVW-G 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            D+ +  +++V +  LR+K+   A G   I TV G GY L
Sbjct: 183 YDDYDPNLVEVHLSALRRKME--ARGPRLIHTVRGLGYRL 220


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 128/231 (55%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   LK   + V +   G   +E+      + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 121 GH--AQSLIVTGDLS---VNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
               A+   V   LS   + LDA T EV +G R I LT  E+ ++ LL       L++  
Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++ G D P     ++V+I  LRKK +  +G    I TV G GYV+RE
Sbjct: 181 ILEEVW-GYDFPTSGNALEVYIGYLRKK-TEESGEPRLIHTVRGVGYVMRE 229


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|167033602|ref|YP_001668833.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860090|gb|ABY98497.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +A +++  L +  + V +V D G       +   +D ++LDLGL    G
Sbjct: 1   MRVLLVEDDSMIAQALQDALATAGYAVDWVAD-GPTAEAALRTQAYDQVLLDLGLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+ LR A    P+ I++  + ++D+VRGL  GADD++ KPF   EL+AR+RA++RR 
Sbjct: 60  LQLLQQLRAADNPVPLLIITARAELDDRVRGLDGGADDFLQKPFEMAELLARMRAVMRRK 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G A   +  G +S++L +K   V     + L+ +E+ +++ L +R    L++    + L
Sbjct: 120 GGRATPELGNGTVSLDLVSKCARVMAQPPVQLSNREFALLQALLIRPGAILSRAELEDRL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ++  I  LR+KL     GK+ I  + G G+++
Sbjct: 180 YGWGNEVESNAVEFLIHALRRKL-----GKDVIRNIRGLGWMV 217


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   L+ E ++      GE+ +E    Y+ D I+LDL L    G E
Sbjct: 3   KILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDY++KPF+  EL ARI+A +RRS+ 
Sbjct: 63  VCREIRKTS-SVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + ++         +  G+L+++ DA  V   G  + LT +E++++  LS      +T+E 
Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +       + T  G GY L++N ++
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDNDQE 235


>gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii
           3937]
 gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii
           3937]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L H +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  + S P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A+       +  G+L++    ++ E +G    LT  E+ ++ELL       +TK+   
Sbjct: 120 DKAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCNLTIETVRSVGYRIR 226


>gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               +LI   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N + 
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E +N+     G +G+E+ +  E   ++LD+ +  I G  +
Sbjct: 19  ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIHM 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 79  CMKVREQK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMKM 137

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      ++ I  GD+ +N+    V V    + LT +E+ ++ELL        + E    
Sbjct: 138 SGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIYE 197

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+   A    YI+TVWG GY
Sbjct: 198 KVWNERSFQSDNTVMVHIRKIREKVEENARKPRYIKTVWGVGY 240


>gi|78066346|ref|YP_369115.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967091|gb|ABB08471.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M ILL+EDD  LA ++   L+   +   +  D+    + L   + +DA++LDL L    G
Sbjct: 1   MHILLVEDDVMLADAVCAGLRQNGWRADWSADVPAARLALVG-HGYDAVLLDLQLPGASG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F +L A+R     TPV I++    + D++RGL +GADDY+ KPF  +EL AR+RA+ RRS
Sbjct: 60  FTLLAAMRANYDPTPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G     ++  D+ V+   K V   G  + L+  EY+ +  L  R+   +T+      +Y
Sbjct: 120 QGRVSERLIYRDVHVDPARKEVTRAGEPVALSIHEYRTLLALMERQGRVVTRTQLEERVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E   I V+I +LR+KL     G   I TV G GY + E+
Sbjct: 180 GNDSAIESNTIAVYIHQLRRKL-----GDELIVTVHGFGYRVGES 219


>gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733]
 gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733]
          Length = 218

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+ A+   +   L+   + VY    G++  ++ +  EFD ++LD+ L +I G+
Sbjct: 1   MKILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +   +   PV  L+    + D+V GL+SGA+DYI+KPF+ EEL+AR+  ++RR+ 
Sbjct: 61  EVFAYM--WEYDLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRRNG 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  L+    + +N   + V  +   + LT KEY+++  L   K   L +E     ++
Sbjct: 119 KNDSNKLLKWQYIEINEKTRAVTARNQAVSLTPKEYELLLYLIRNKGIILPREKIYQKIW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +EP  + +D+ I ++R KL         + T++G GY+L
Sbjct: 179 GREEEPNSRTLDLHIQRIRNKLQLGQD----LRTIYGVGYLL 216


>gi|18309218|ref|NP_561152.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18143894|dbj|BAB79942.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E       +   D +EL    + D IILD  L DI GF
Sbjct: 1   MKILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKEKPDIIILDAMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            ++  ++      P+ +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI    + I 
Sbjct: 61  NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + L + GDL++ LD +   ++   I+LT KE++++  L   KN   ++E  LN
Sbjct: 120 SDSKKKVKDLTI-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY L E
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222


>gi|269793614|ref|YP_003313069.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269095799|gb|ACZ20235.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 253

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++A+  ++   L+   F V V   G++ ++    +  D ++ D+ +  + G E+
Sbjct: 23  VLLVDDEEAITGALAPFLERSGFEVRVAHDGQEALDTLDVWHADVVVSDVMMPRLDGREL 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR     TPV +L+ +    ++   L  GADDY++KPFN +EL +RIRA++RRS G 
Sbjct: 83  VRRLRTRDDWTPVVLLTQVGESFERSAALDEGADDYLNKPFNPQELASRIRAVLRRSVGG 142

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + L     +V+GDL V+  A+ V + G  + LT +   +++ L        T+E  L  
Sbjct: 143 EKPLSAADRLVSGDLLVDRTARRVFLAGAEVVLTPRASLLLDYLMTHPRELHTRERLLQA 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+     P  + +D  + ++R+ L + AG   Y+ETV   GY
Sbjct: 203 LWGFDLVPSTRAVDHRVAEIRRVLHDDAGAPRYVETVPNLGY 244


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           MRILL+EDD      ++ +L       Y+ D  EDG E+ ++     ++D +ILD  L  
Sbjct: 1   MRILLVEDDYEQLEPLQGILSEAG---YIVDTAEDG-EIAEWLISQKDYDLLILDWMLPT 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G  + R  R +  + P+ +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ 
Sbjct: 57  ISGLSLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALA 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR        +   DL ++L   TVE +  ++ L+ +E +++E L    N  LT+     
Sbjct: 117 RRVPNWQGDSLRVADLQLHLAYLTVEREQIKVELSPREARLLEYLMRHPNQVLTRSQIEE 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L++   EPE   + V + KLR +L      + +I TV+G GY L
Sbjct: 177 ALWEWGMEPESNALTVLVRKLRHRLQQVDAAE-WIRTVYGMGYRL 220


>gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAMSGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +S+  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KLS   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLSALPGSTMTIETVRSVGYRIR 226


>gi|224823765|ref|ZP_03696874.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604220|gb|EEG10394.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   LA  +   L +  + V V   G +     +   +D ++LDL L  + G 
Sbjct: 1   MRILLVEDQADLARWLARALTASGYVVDVIHDGLNADTALQTEPYDLVVLDLNLPRLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    + PV IL+    + DKV GL+ GADDY+ KPF   EL AR++A++RR +
Sbjct: 61  DVLVRLRARHQTLPVLILTAHGELSDKVEGLELGADDYLVKPFELVELEARLKALLRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +  G L  +   +   +   R+ LT +E+ ++E L  R    + +E   + ++ 
Sbjct: 121 GHDNEPLRCGALVFDKQERLFRLGTERLVLTRREHAVLEALMRRAGQPVNRERLFSQVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE   + I+++I +LRKKL    G    I T+ G GY+L E
Sbjct: 181 LDDEVNPEAIEIYIHRLRKKLE---GSDVAITTLRGLGYLLEE 220


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58
           RILL++D+  LA S+   L+ E  +V V   G    EL +      +D ++LD  L  + 
Sbjct: 3   RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR
Sbjct: 63  GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122

Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + G  + +  +  GDL ++ + +    QG  IHL+ KE++++E         LT E    
Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ G D P   ++   +  L ++     G    I  V+G+GY     A+D
Sbjct: 183 RVWAGEDPPSSNVLAAQVRLL-RRRLRLPGSPELIHAVYGKGYRFGPVAED 232


>gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G+  + +L    +   IILDL + +I G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTNPDIGLIILDLMMPEIDG 60

Query: 60  FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +V++  RV K S  P+ +LS   +  DK++GL +GADDY++KPFN  E++AR+++++RR
Sbjct: 61  MDVIK--RVRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+G   +    ++  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + + 
Sbjct: 119 SQGEVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADD 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 179 IFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++D+  +    EL+ +   ++ Y+ +   DG           FD +ILDL +  + 
Sbjct: 106 KILIVDDEPRIR---ELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMD 162

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G   LR +R   I+TPV IL+      DK+ GL+SGADDY+ KPF+  ELVAR++A++ R
Sbjct: 163 GMTCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      A   +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L
Sbjct: 223 TMPKPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKIL 282

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +++     E + +D  +  LR  L      ++YI TVWG GY    +A
Sbjct: 283 QKVWNYDYFGEDRTVDTHVKMLRGHLGKC---RSYIATVWGIGYKFDPDA 329


>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + LK+  ++V     G   +E       DA++LDLGL D+ G E
Sbjct: 4   RVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGLPDMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR      PV ++S     E+K++ L +GADDYI+KPF+ +EL+AR+ A++RR+  
Sbjct: 64  VIKQLR-GWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRRTPT 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H      ++++ T + +V+L A+    +G  I LT  E+ ++E+L   +   +++   L 
Sbjct: 123 HEPAAADEAVVETEEFTVDLLARKARRRGKSIRLTPTEWHLLEVLIRNRGRLVSQRRLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V++  LR+KL        ++ T  G GY
Sbjct: 183 EVWGSSYGTQTNYLRVYMAHLRRKLEADPSHPRHLITASGMGY 225


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +ILL+ED++ ++  IE+ L  E + V V   G + +E  +  E+  I+LD+ +  + G 
Sbjct: 4   FKILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+  S + DKV GL  GA+DY++KPF  EEL+ARIR   R   
Sbjct: 64  EVCRRIRQFS-CVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKL 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +   D+ ++     V   G  I LT KEY +++ L + KN  LT+E  +  ++
Sbjct: 123 VKSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DVFI  LR K+ N +  K  I T+ G GYV+++N
Sbjct: 183 GYDYVGDTNVVDVFIRYLRSKIDNGSKEK-LITTIRGVGYVIKDN 226


>gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 114/221 (51%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +   L+ +++ V V   GE G    +  +++ I+LDL L  + G 
Sbjct: 1   MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  S  V +L+   ++ DKV GL +GADDY+ KPF  +EL ARIRA+ RR  
Sbjct: 61  SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++            + LT KEY ++E L        T+ M L+ L++
Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    +   I  LR KL  A G    IET++G GY L
Sbjct: 181 LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRL 221


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E ++V V + G DG+        D ++LDL L  + G +
Sbjct: 3   RILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V RALR  + S PV +L+   S  DKV GL+ GADDY++KP++  EL+AR++A++RR   
Sbjct: 63  VCRALR-QRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I  G + ++++  TV V G    L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+        +I TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGY 222


>gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +     IILD+ + D+ GF
Sbjct: 4   VLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQKIR-EKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + ++  D+ ++   +TV VQ   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++    + +   +  FI KLRKK+        YI+TV G GY   + A
Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233


>gi|289677021|ref|ZP_06497911.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD+ +A  I   L ++  N+           +    +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGLPDEDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR+LR    + PV IL+    ++D+V+GL +GADDY+ KPF+  EL AR+  +VRR  
Sbjct: 61  SLLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I  G L+ +   +   + G  I L+ +E  ++  L       L+ E   + +Y 
Sbjct: 121 GRTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             DE E   ++V I  LR+KL     G   IETV G GY L   +  ++C
Sbjct: 181 FTDEVESNALNVHIFHLRRKL-----GVQIIETVRGSGYRLGVASSLQSC 225


>gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180

Query: 181 GRDEPEVK--IIDVFICKLRKKL 201
             ++ ++    + ++I  LR+KL
Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203


>gi|325275459|ref|ZP_08141389.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099410|gb|EGB97326.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+ L LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVALALKSLGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFALGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GQPVAIVTFRGLGYLL 218


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L+   F V     GE+G+      + D ++LDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R  K   P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS+ 
Sbjct: 64  VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         I+ G L +  +       G  I LT KE++++  L  R+   +T+E  
Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN +++     + +I+DV I  LR+K+        YI+TV G GY L
Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKL 230


>gi|218662767|ref|ZP_03518697.1| probable two-component response regulator protein [Rhizobium etli
           IE4771]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+K LA ++   L         T    D +EL +   +DAI+LD  L D  G 
Sbjct: 1   MRILLIEDEKELAEALTAALGKHGIVTDHTVHLADAVELTRQNPYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR     TP+ +L+ +++ +++V GL  GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  RFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y+
Sbjct: 121 SLSELKITAGRMVIDPLHLSVTVGDTPLDLPRRELLVLAALARRKEKTVLRSTLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   +D  I +LRK+L++ AG +  I  + G GY+++E
Sbjct: 181 YEEEIQSNALDAHISRLRKRLAD-AGAEVSIHNIRGVGYLMKE 222


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ +E+ +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  I L L    F+      G    +       D +ILDLGL  + G E
Sbjct: 15  RVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGLPGLDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R A     + +L+   S  D++ GL+ GADDYI+KPFN  ELV RI++++RR R 
Sbjct: 75  VCKRIR-AFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRK 133

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +++     +  G + ++  A  V V+G  + LT  E+++++ L  +    +++   ++
Sbjct: 134 IDETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVS 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D     + +I+DV I  LR+KL   A G ++I+T+ G GY
Sbjct: 194 QVWDTTWVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGY 236


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G++ +      + D +ILD+ L D  GFE
Sbjct: 22  RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR       V  L+   +  DK+ GL  G DDYI+KPF  EEL+AR+RA++RR+R 
Sbjct: 82  VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  L+   D+ ++ DA  V      + L+  E+ ++       N  L++   L
Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   + E  ++D ++  LR+KL     G   I T  G GY LR
Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQ--HGPPLIHTQRGFGYALR 246


>gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
 gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +   ++S N++V     G D +EL K   +D IILD+ +  + G 
Sbjct: 1   MKILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + I+D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+  + + V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             D+   +++ ++I  LR+KL +
Sbjct: 180 DEDDANEEVVWIYISYLRQKLQS 202


>gi|295110799|emb|CBL24752.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 12/221 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNV----YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           IL+I+DD+ +   ++ +LK+E++ V    YV     D   + +F  FD I+LD+ L  + 
Sbjct: 4   ILVIDDDEKILELVQEVLKNEHYIVETRSYV-----DNTNIGEFEGFDLILLDIMLPFLD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+L  ++   I+ PV  LS  SS   KV+GL SGADDYI+KPF+  ELVAR++  +RR
Sbjct: 59  GYEILERIKNI-ITCPVIFLSAKSSEGAKVKGLMSGADDYITKPFSIRELVARVKVALRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  +  + I+   L  N D+ ++++    I LT  E+++ ++L        +K+    +L
Sbjct: 118 NLKNGSNGILINGLVFNQDSNSIKLDNGEILLTKNEFRICKILVQNSGKIFSKDELYEYL 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           YD     +++ I  FI  +RKK      G + I+T+WG GY
Sbjct: 178 YDLDANAQLRTITEFIYSIRKKFKTL--GLDPIKTIWGIGY 216


>gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 66  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L A  V   G+ I L+  E+ ++  L L K   +T+    + ++
Sbjct: 124 QYLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 222


>gi|226312596|ref|YP_002772490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095544|dbj|BAH43986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN--VYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR+LL ED   L   I  MLK +  +   +VT+ G++   L     +D ++LD  +    
Sbjct: 1   MRVLLAEDQLLLGKIIAHMLKEKGGHDVKWVTN-GQEAYNLIIDSYYDVLVLDWMMPQKD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + LR    S  + +L+   ++E+++ GL +GADDY+ KPF  +EL+AR+RA+ RR
Sbjct: 60  GVTLCKELREQGYSGAILMLTAKDTLEERIEGLDAGADDYLVKPFESDELLARLRALSRR 119

Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    Q  +I    + +N   +++   G  I LTGKE+ +++LL   + T LT+++ L+ 
Sbjct: 120 NFAPIQEDIIEVNGIRMNRSKQSITRDGEEIQLTGKEFALLDLLVRNQGTVLTRDLILDR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ G  E     +DV+I  LRKK+ +A   K  I ++ G GYV+ ++
Sbjct: 180 IWGGEMEVASNSVDVYITLLRKKI-DAPSQKPLIRSIRGVGYVIEKS 225


>gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 247

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 14/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L    F V      E+G+ L +  + +    ++LD+ + ++ G
Sbjct: 5   ILIVDDDPVVRDLVSEYLHGRGFQVATL---ENGLALQRRLQRERPALVVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR- 120

Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RG         ++    G   VN  A+ +   G RI L   E+ M+++      T LT+ 
Sbjct: 121 RGSIAPGAPEQRAPYHFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 181 QLLEKLHGNSEAHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVR-AKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|71734320|ref|YP_276098.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257486549|ref|ZP_05640590.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289628131|ref|ZP_06461085.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649903|ref|ZP_06481246.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488665|ref|ZP_07006694.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554873|gb|AAZ34084.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298156738|gb|EFH97829.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330871254|gb|EGH05963.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330889487|gb|EGH22148.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989046|gb|EGH87149.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010032|gb|EGH90088.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|154245228|ref|YP_001416186.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154159313|gb|ABS66529.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ ++      L++  F V       D  E      FDAIILDLGL D  G 
Sbjct: 1   MRILLVEDNERMSALAADALRTAGFAVDAVHAAADAEEAVSTTPFDAIILDLGLPDRDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR   ++ P+ +L+        + GL  GADDY+ KPFN +EL+AR+RA++RR  
Sbjct: 61  DLLDTLRRKGVAQPILVLTARDGAPSVIAGLNGGADDYMRKPFNVDELIARVRALLRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++ ++  A+   V G  + L+ KE   +ELL  R    ++K      LY 
Sbjct: 121 SALGVSLKEGNVELDTIARQARVDGVGLDLSRKEAAALELLMRRTGAVISKPALEETLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I +LRKKL+  AG    I T+ G GY+L
Sbjct: 181 YGEEVSSNAVEVLIHRLRKKLAG-AGAVVEIHTLRGIGYLL 220


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   ++L  + + F V   + GE  +E    Y  + +ILDL L    G+E
Sbjct: 3   KVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ GL+ GADDYISKPF+ +ELV R + ++RR+  
Sbjct: 63  VCREIRKTS-NVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEA 121

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                       H    I   DL ++  + TV   G RI +  KE +++  L+   N   
Sbjct: 122 ACPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            +E  L  ++      E + +DV I ++R+K+ +     ++ I+TVWG GY
Sbjct: 182 NREQLLGQVWGYDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGY 232


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ + ++      D +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++A+R      P+ ++S  ++  DK++GL +GADDY+SKPFN  E++AR+++++RRS
Sbjct: 61  IEVIKAVR-KDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L +  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55
           R+L+++DD  +  ++E  L  E F V     G   I+     +      FD ++LDL L 
Sbjct: 3   RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +V R LR +   TP+ ++S   +  D+V GL+ GADDY+ KPF   ELVAR RA+
Sbjct: 63  GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRAL 122

Query: 116 VRRS-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RRS     R     +I  GDLS+  D   V  +G R++L+ KEY+++E          +
Sbjct: 123 LRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVWS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   ++ ++      + K +DV I  LR+KL        +I TV G GY
Sbjct: 183 RNQLIDQVWGTDYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGY 231


>gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 249

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  LA  +   L +  F V     GEDG+ +     F A+ILD+ L  I G EV
Sbjct: 15  VLLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLPGIDGLEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++ A+  TP+ +L+      D++ GL+ GADDY+ KPF   EL+AR+RAI+RR +  
Sbjct: 75  CRRMK-ARSETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q++      G L ++  +   +V G    LT  ++Q++ +L+      L++E+ ++ L 
Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV I ++R ++ +       I TV G GYV 
Sbjct: 194 GETLEAFDRSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235


>gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180

Query: 181 GRDEPEVK--IIDVFICKLRKKL 201
             ++ ++    + ++I  LR+KL
Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L+ E + V     G   +   + +  D ++LD+ L  + GFE
Sbjct: 4   RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  ALR A+ + P+ +L+  S   D V GL++GADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCAALR-AESNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  I   DL +++    V      I LT  E+ ++  L+   +   ++E  L  ++  
Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGY 220


>gi|188578300|ref|YP_001915229.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188522752|gb|ACD60697.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIPGF 60
           +L+ED+  LA +I   ++      +  D   DG+    + ++  FD ++LD+GL  + G 
Sbjct: 1   MLVEDNADLADAIVRRMRRSG---HAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 58  RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A T+ + G  I L  +EY++ ++L  R    + K+   N L+ 
Sbjct: 118 GKASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I++++ +LR+KL+ A      I TV G GY L E
Sbjct: 178 FDDDAGPNAIELYVGRLRRKLAAA---PLRIVTVRGAGYKLEE 217


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  ++  +++ LK + F+V   D G+  +++   Y+ DA ILD+ +  + GF 
Sbjct: 10  KVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGFS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   ++I   DL+++ D   V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++ ++  LR+K+         I TV G GYVLR+
Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKID--TDDPRLIHTVRGVGYVLRK 232


>gi|261363894|ref|ZP_05976777.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996]
 gi|288567893|gb|EFC89453.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59
           MR+LL EDD  +A ++   LK      Y  D  ++G ++    +     L L    +PG 
Sbjct: 1   MRVLLAEDDNMIAQAVAANLKDSG---YAVDWVKNGSQVSTALQAQNYDLLLLDLGLPGK 57

Query: 60  --FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              +VL  +R     TPV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++R
Sbjct: 58  DGLDVLTQIRHEGSKTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  GH+Q+L+  G L++N     VEV+G    + L+ KE+ +++ L +R    L++    
Sbjct: 118 RHSGHSQTLLTNGALTLNPATYQVEVKGEDKPVLLSNKEFAVLQALMMRPGIILSRSDLE 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +Y   +E E   +D  I  LRKKL     GK +I+ V G G+++
Sbjct: 178 DKIYGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGVGWLV 218


>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
 gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V+    G + +E  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231


>gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + L++  ++V V   G D ++    +  D ++LDLGL D+ G E
Sbjct: 3   RILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHPPDLVVLDLGLPDLDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R LR      P+ +LSG +  +DKV  L +GADDY++KPF  +EL+ARIRA+ RR   
Sbjct: 63  VIRGLR-GWTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAVTRRHTT 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              + G A S    G  +V+L  + V    G  + LT  ++ ++E L       +T+   
Sbjct: 122 ADTADGRAGSQARVGRHTVDLAERIVTRDDGTEVRLTPTQWGVLERLLRHPGKLITQRQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++    + E   +  ++ +LR+KL        ++ T  G GY  R 
Sbjct: 182 LQDVWGPEYQNETGYLRQYMAQLRRKLETDPARPRHLITEPGMGYRYRP 230


>gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESRMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|257484807|ref|ZP_05638848.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011147|gb|EGH91203.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218


>gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri
           93-146]
 gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri
           93-146]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + ++     V   +  ++     +    D  I+DLGL    G 
Sbjct: 1   MRILVVEDNNLLRHHLSVQIRELGHQVDAAENAKEADFFVREQGPDIAIVDLGLPGEDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +I+ P+ +L+   S ++KV  L++GADDY++KPF+ EE++AR++A++RR+ 
Sbjct: 61  SMIRRWRSEQITLPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I       +L  + + V    I LT  EY ++E L       ++K+  +  LY 
Sbjct: 121 GLASQIISMPPFQADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL +     + I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKLQSEYPA-DVITTVRGQGY 218


>gi|256379954|ref|YP_003103614.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924257|gb|ACU39768.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  ++ + L +  + V     G   +      + D ++LDLGL D+ G E
Sbjct: 3   KVLVVDDEPQIVRALRINLSARGYQVLTAHDGAAALRAAAEGKPDVVVLDLGLPDVDGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ +LS  +   DKV  L +GADDY++KPF  +EL+AR+RA VRRS  
Sbjct: 63  VIAGLR-GWTTVPIIVLSARADSTDKVEALDAGADDYVTKPFGMDELLARLRAAVRRSAA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   ++++ TG  +V+L AK V  +   +HLT  E+ ++E+L       + +   L  +
Sbjct: 122 PADAGEAVVRTGAFTVDLVAKKVHREDAEVHLTPTEWGLLEVLVRNPGKLVAQRQLLQEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V++ +LR+KL        ++ T  G GY
Sbjct: 182 WGPAYAKETHYLRVYLAQLRRKLEPEPSRPRHLVTEPGMGY 222


>gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 247

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIPG 59
           IL+++DD  +   +   L+   F V      E G+ L +  + +    ++LD+ + ++ G
Sbjct: 5   ILVVDDDPVVRELVSQYLEGRGFKVATL---EHGMALQRKLQDERPALVVLDIMMPELDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
              LRALRVA    PV +L+  +   D+V GL+ GADDY+ KPF   ELVARIR ++RR 
Sbjct: 62  ISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++    G   VN  A+ +   G RI L   E+ M+++      T LT+  
Sbjct: 122 GSIAPSAPEQRAPYRFGRFEVNFPARELRRDGERITLRSSEFAMLKVFVTHAMTVLTRGQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L+   +    + +DV I +LR+ +        Y++TVWGRGYV 
Sbjct: 182 LLEKLHGNSETHRNRSLDVSIWRLRRLIEVDPSEPRYVQTVWGRGYVF 229


>gi|209548309|ref|YP_002280226.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534065|gb|ACI54000.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+  +  I   L        V   G DG+   +   +D I++D  L  + G 
Sbjct: 1   MRILLIEDDRKTSDYIAKGLSEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR AK+ T    L+ +  ++D+V GL++G DDY++KPF   EL+AR+ A+ RR  
Sbjct: 61  AIIRSLRAAKVGTSALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPP 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++L  +     G  I L  +E+ ++E+L   +   +TK M L  ++
Sbjct: 121 VQEQKTVLKVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+      +  + TV   GY L
Sbjct: 181 DFHFDPKTSVVETHISRLRAKVDRPFQAQ-LLHTVRNTGYSL 221


>gi|53803484|ref|YP_114633.1| DNA binding response regulator KdpE [Methylococcus capsulatus str.
           Bath]
 gi|53757245|gb|AAU91536.1| DNA binding response regulator KdpE [Methylococcus capsulatus str.
           Bath]
          Length = 231

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +   +   L+S+ F VY  D G  GI        + ++LDLGL D  G EV
Sbjct: 8   VLVIEDDPPMRRFLRTSLRSQGFQVYEADTGNRGIIEAGLRRPEVVVLDLGLPDRDGVEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ALR   +  P+ +LS  S+ E K+  L +GADDY++KPF   EL+ARIR  +RRS G 
Sbjct: 68  VKALREWTL-LPIIVLSARSTEEHKIEALDAGADDYLTKPFGIGELLARIRVALRRSAGV 126

Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++       G L ++L  +TV V    I L   EY+++  L+      LT    L  +
Sbjct: 127 TVNVPDEGGAGGGLRIDLLRRTVAVGEREIRLPPTEYRLLAALARHAGKVLTHRQLLLEV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + +++ +LR+KL        Y+ T  G GY L+
Sbjct: 187 WGPSHVEDCHYLRIYMSQLRQKLETDPAKPEYLITESGVGYRLK 230


>gi|148549507|ref|YP_001269609.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148513565|gb|ABQ80425.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+ L LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVALALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  +++ L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDDNLTLTSREQSVLQALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218


>gi|150391046|ref|YP_001321095.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950908|gb|ABR49436.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDDK + + I L LK+  +       G +G+ L   +  D I+LDLGL DI G 
Sbjct: 5   LKLLIIEDDKYILNFISLSLKTSGYAFETARTGLEGMSLFYSHHPDIILLDLGLPDIDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++++R+     P+ I+S      +K+  L  GADDYI+KPF+  EL+ARIR + R+ +
Sbjct: 65  DVIKSIRMIS-QVPILIVSARGQENEKIAALDEGADDYITKPFHMGELMARIRVVQRKLK 123

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q     +     L+++ + + V V  + +H+T  EY+++ LL   K   LT    L 
Sbjct: 124 KAMQPENIEIFQMDYLTIDYEKRIVLVDNNEVHVTPIEYKLLLLLVANKGKVLTHNYILK 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   +  + K I VF+  LR+K+        +I T  G GY
Sbjct: 184 EIWGYGETGDSKSIRVFMANLRRKIEKDKASPRFILTEVGVGY 226


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  L   +  +L  E F V V + GE+G++      FD ++LD+ +  + GF +L 
Sbjct: 1   MVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLT 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS----- 119
            LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+AR+RAI+RR+     
Sbjct: 61  KLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            RG++   +   D+ +    +        + LT  E+ ++E L       ++K      +
Sbjct: 120 QRGNSSDEVHFMDIVLQPGLQQARCGEQLLELTATEFGLLECLLRNPGQIVSKSHLSEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + EP  + ID+ +  LRKKL +   G+   +TV GRGY+  E 
Sbjct: 180 LGKKLEPFDRAIDMHLSNLRKKLPDRTDGQPRFKTVRGRGYLWLEQ 225


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 129/224 (57%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +D+ A+A  I+  LK E +       GE+ +E+ K  E+D +ILD+ +  + GFE
Sbjct: 3   RVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDGFE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            LR LR  K S  PV +L+      D+V GL+ GADDY+ KPF+  EL+AR++A +RR  
Sbjct: 63  TLRELR--KFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRRE 120

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +S+     I  GDL ++L    V+ +G  I LT +E+++++ L+  +    ++E  L
Sbjct: 121 VEVKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      +++ +DV + +LR+K+ +      YI TV G GY
Sbjct: 181 SSVWGYEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGY 224


>gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 21/237 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ L  +I+L L+ E + V     G+  +++ K   F+ IILD+ + +I GF+
Sbjct: 6   RILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDGFQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R+     P+  L+  +S ED++ GL+ GADDY+ KPFN EEL+ R+  +VRR   
Sbjct: 66  VAETIRLQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG-- 123

Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTT 168
                 + GD      S  +  KT+    + +H        LT KE  +++LL  R+N  
Sbjct: 124 ------MKGDDLKELNSYTIGDKTIYFNSYELHHADGTITSLTKKETMLLKLLIERRNEA 177

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++E  L  +++    P  + ID FI   RK          Y  ++ G GY   +N 
Sbjct: 178 VSREQILETVWNYDVYPSTRTIDNFILTFRKYFEPDQKHPIYFHSIRGVGYKFTDNP 234


>gi|329941810|ref|ZP_08291075.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299527|gb|EGG43427.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 217

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 121/211 (57%), Gaps = 4/211 (1%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           LAH++   L +E ++V +   G  G+ + +  E+  ++LDL L  + G++V   LR    
Sbjct: 3   LAHTLRTGLTAEGYSVDLAHDGRQGLWMARTGEYALVVLDLMLPGLNGYKVCAQLRREGN 62

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
           +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+   A  ++  GD
Sbjct: 63  ATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAATVAPPVLAVGD 122

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190
           LS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H +   DE  +  ++
Sbjct: 123 LSLDVAGRVCRRAGTRVDLTPREFAVLELLARRAGQAVSKGDLLYHAWP--DEAVDPNLV 180

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +  LRKK+ + A  +  ++TV G GY L
Sbjct: 181 EARVSSLRKKV-DTAFRRQSLQTVRGTGYRL 210


>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +E  L+ + +       G+  + L +  + D ++LD+ L ++ G EV
Sbjct: 2   VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPELDGLEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R A  +TPV +++  S   DK+ GL+ GADDY++KPF+  E+VAR++A++RR+   
Sbjct: 62  LRRIR-ADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRANPL 120

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +++  G L ++ +     V   R+ LT  E++++E L+       T++  L     
Sbjct: 121 ESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEAALP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E ++IDV +  LRKKL  AAG    +ETV G GY L
Sbjct: 181 DSDALE-RVIDVHLKNLRKKL-EAAGATGLLETVRGVGYRL 219


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I + L S  +       G +   +   ++ D ++LD+ L  + G E
Sbjct: 7   KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R +    PV +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKSS-EIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNY 125

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  +I   DL ++ ++  V  +G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+K+S   GG+N+ IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKIS---GGENWLIETVWGVGY 223


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  L   +   L+   F V     G   +   +    D I+LD+ L D  GFE
Sbjct: 6   RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65

Query: 62  VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V+R LR      A    PV  L+   + ED++ GL++G DDY++KPFN EELV RIRAI+
Sbjct: 66  VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G  A   +V G L ++ D+  V   G  + L+  E+ ++ +L       L+K   L
Sbjct: 126 RRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185

Query: 176 NHLYD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    G D+    I+  +I  LR+K+         I TV G GYVLR
Sbjct: 186 ELVWQYDFGGDD---SIVASYISYLRRKVD--LDEPKLIHTVRGTGYVLR 230


>gi|296131372|ref|YP_003638622.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023187|gb|ADG76423.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD AL  ++EL L    F+V+ T LG   + L + ++ +  I+DLGL D+ G E
Sbjct: 3   RLLLVEDDDALVRTLELTLGVHGFDVHATGLGAQALVLARTFQPEIAIVDLGLPDLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+RALR A    PV +LS   +  DKV  L +GADDY++KPF  +EL+AR+RA +RR   
Sbjct: 63  VVRALR-AWSDVPVLVLSARDAQHDKVGALDAGADDYVTKPFGMDELLARLRAALRRVSP 121

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++++  T  L ++  ++ V   G  +HLT  E+ ++E L       +++   L  ++ 
Sbjct: 122 ADRAIVFRTEHLVIDRASRRVARDGAPVHLTPTEWSLLEALLRFPGRVVSRRELLQDVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   EV  + V++ +LR+KL  +     ++ T  G GY
Sbjct: 182 PQYVQEVTYLRVYVAQLRRKLEESPAAPRHLLTEPGVGY 220


>gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   ++  L+ E +       G +   + +   +  I+LDL L  IPG EV
Sbjct: 7   VLIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLPGIPGEEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R  K +TPV IL+   +I+DKV  L+ GADDY++KPF+ +E+ AR+   +RR+   
Sbjct: 67  LRDIR-KKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R   +      +L +N    TV+V    + H+T +E+ ++ELL        +KE    +
Sbjct: 126 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ +   E K +DV I  +RKK+  A   K YIETVWG GY L
Sbjct: 186 AWEEQYMGETKTLDVHISNIRKKIK-AVTDKEYIETVWGIGYRL 228


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F V     G++ ++       D ++LD+ L D+ GF V
Sbjct: 17  LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTV 76

Query: 63  LRALR------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           +R LR       +    PV  L+      DKV+GL  GADDY++KPF+ EEL+ARIRAI+
Sbjct: 77  VRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAIL 136

Query: 117 RRSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G A    +V  DL+++  A  V   G  + L+  E++++  L       ++K   L
Sbjct: 137 RRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQIL 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222
           +H++      ++ I++ +I  LR+KL +  G G   I TV G GY LR
Sbjct: 197 DHVWAYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYALR 244


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA-------IILDLGL 54
           RIL++ED+  +   I + L+ E + V+  D G  G+ + +  EF+A       +ILD+ L
Sbjct: 20  RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            ++ G ++ R LR    + P+ +LS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCRA 139

Query: 115 IVRRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           ++RR +        S+    D+S+  +   V V+G  + L+ KEY+++EL         +
Sbjct: 140 LLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVWS 199

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 RDQLIEQVWGADFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGY 248


>gi|150378031|ref|YP_001314626.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032578|gb|ABR64693.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 222

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV---YVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDD+ L  +++  +  +   V      D  E  +E   +   D ++LDL L D 
Sbjct: 1   MRVLLVEDDEMLGDAVKTHVHRQGHAVDWALTRDEAEASLEAAPY---DLVLLDLRLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L+ALR  +   PV I++    + D++ GL +GADDY+ KP +  EL ARI A+ R
Sbjct: 58  SGLDILKALRARRDEMPVIIMTAHDQVSDRIAGLNAGADDYLVKPVDLGELQARIHAVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R   H    +  G ++V    + +  Q G  + L+ +E+ +++ L  RK   ++K     
Sbjct: 118 RYGTHKLPDLTIGGVAVYPSERRISAQDGEEVLLSSREWAVLDRLIARKRAIVSKSQIEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            LY    E E   ++V++ +LR+KL     GK+ IETV G GY +  +A
Sbjct: 178 ALYAFGAEVESNTVEVYVSRLRRKL-----GKDAIETVRGVGYRISADA 221


>gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +++ +K+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVREVR-KDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A  ++  G L++N D+  V+ + G  + LT  E+ ++ LL+   N   + +  
Sbjct: 120 EKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224


>gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM
           16841]
 gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii
           A2-165]
 gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 5/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDDK +   I+  L+  N+ V+ T  G + +E  K    D IILDL L  I G E
Sbjct: 3   KVLIIEDDKEICFMIKDHLEKYNYQVFFTFTGANALERVKELTPDLIILDLMLPFISGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-RAIVRRSR 120
           ++R +R    + PV ++S  S   +KV   + GADDY++KPF+ +EL+ARI R ++R  +
Sbjct: 63  LIRTIRKFS-NVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLLRSQK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+LS++  +K V V    I LT KEYQ++ELL+   +   +K+     ++ 
Sbjct: 122 CTPNLCLKFGELSIDTASKIVTVADEIIVLTAKEYQLLELLAKYPDKVFSKQNLYESIWQ 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +  +I+  I  LRKKL  + G +  I+TVWG GY
Sbjct: 182 EPFARDNDVINTHISNLRKKL-RSEGCR--IKTVWGLGY 217


>gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 2/217 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+ VL+
Sbjct: 1   IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGWGVLK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR      
Sbjct: 61  RLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRET 119

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
             +V GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D   +
Sbjct: 120 ERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDMNFD 179

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +++V I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 SDTNVVEVAIRRLRAKVDDAFPVK-LIHTVRGVGYVL 215


>gi|302340428|ref|YP_003805634.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637613|gb|ADK83040.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +  +L  E + V   + GE  +E     +FD ++LDL L  I GF V
Sbjct: 7   ILVVDDEPHILQILHFLLTDEGYQVTTVETGEAAVETADSEDFDLVVLDLALPGIDGFSV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   I  P+ ILS     +  V GL+ GA DY+ KPFN  EL+ R+  ++ R+ G 
Sbjct: 67  CRTLRDKGI--PILILSSHDEDDYVVSGLELGALDYVRKPFNHRELILRVANLIGRNDGE 124

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   IV+  +SVNLD++ V  +G R+ LT  EY ++ LL  +K   +T E  L  ++ G
Sbjct: 125 ERPQGIVSEGVSVNLDSEEVLCRGERVRLTPTEYLLLVLLMKQKGAVVTWEEILREVW-G 183

Query: 182 RDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +E +   ++I V I +LR K+         I   WGRGY
Sbjct: 184 TEEWDGYRQMIKVNIQRLRTKVEQDPHNPRIIVNQWGRGY 223


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ I   +  +N+        ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I   L+ EN  V   + GE+ +E  KF  FD IILD+ L  I GF V
Sbjct: 8   ILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVMLPGIDGFVV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      PV +L+  S   D++ GL  GADDY++KPFN +E + R++ ++RRS  +
Sbjct: 68  CKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRRSAWY 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               I      G+  V L +   +     I LT  E +M+ L   ++   + +++ L ++
Sbjct: 128 RPDPIEEGYRFGENQVYLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKVLLENV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E + +D FI +LRK          Y +TV G GY
Sbjct: 188 WGYASDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGY 228


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L+ E F V     GE+ + L        ++LD  L  + G EV
Sbjct: 9   ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R LR    +  TPV +L+      DKVRGL SGADDYI+KPF+  ELVAR+RA++RR +
Sbjct: 69  CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRAA 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ L+   D+ ++L A  V   G  +HL   E++++           ++E  L+ ++
Sbjct: 129 PGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I +LRK L N    ++ I TV   GY L +N
Sbjct: 189 GHDVYVEPRTVDVHIRRLRKAL-NETDDQDLIRTVRSAGYALDQN 232


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V     G + +E  K  ++D ++LD+ +    G E
Sbjct: 10  KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RRS G
Sbjct: 70  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRS-G 127

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q+ +   +      + V LD++ V V G  ++LT KE+ ++ELL    N   ++   L
Sbjct: 128 KKQAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + +DV + +LR+K+    G   YI T WG GY  +
Sbjct: 188 STIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 234


>gi|159040471|ref|YP_001539724.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919306|gb|ABW00734.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +A  + L L  + F V++   G+ G+   +     A +LD+ L  +PG E+
Sbjct: 11  VLLVEDEATIADLVRLYLNRDGFGVHLERDGDAGLAAARRLRPVACVLDIALPGLPGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  L+      D+V GL+ GADDY++KPF+  ELVAR+RA++RR  G 
Sbjct: 71  CRRLREAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRRVAGP 130

Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G ++++ D +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 131 PPGQPRRVGVVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +  DV + ++R KL +A    + I T  G GY
Sbjct: 191 AVPAGTRTADVHVAQVRAKLGSA----SVIRTHRGVGY 224


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I+L L+S  +   +++ G+    +   Y+ D ++LD+ L    G +
Sbjct: 7   KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R A  +TPV +L+      DKV  L+ GADDYI KPF  +ELVAR++A++RR+  
Sbjct: 67  VLKWIRKAD-NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANS 125

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q L   G L +++ + TV      I +  KE++++  L+  KN   T+E  L  +
Sbjct: 126 ENVSSQVLNFNG-LKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEV 184

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G D P + + +DV + +LR+KL    G    I+TVWG GY
Sbjct: 185 W-GYDYPGDSRTVDVHVKRLREKLHEGNGWD--IQTVWGVGY 223


>gi|332974949|gb|EGK11861.1| two component response regulator IrlR [Psychrobacter sp.
           1501(2011)]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L   I+  L    F V     G DG        ++ II+D+ L DI GF
Sbjct: 1   MKILLVEDEVTLGEYIKKGLTEAGFLVDHKLNGLDGYHALMSETYNVIIMDVMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    +ED+++G++ G DDY++KPF   ELV RI+ ++RR+ 
Sbjct: 61  ELVKNYRAAGHITPVLFLTAKDDLEDRIKGIEIGGDDYLTKPFAFAELVVRIKNLLRRAN 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  + +   DL+++L  +TV   G  I LT KE+ +++ +  R+   L + +  + +
Sbjct: 121 QSEYLNTQLKIADLTLDLAKRTVHRGGVSIQLTSKEFALLQFMLEREGEVLPRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+      K  I TV G GY L
Sbjct: 181 WDMNFDSDTNVIDVAIRRLRVKIDEGFDLK-LIHTVRGMGYKL 222


>gi|296129143|ref|YP_003636393.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020958|gb|ADG74194.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 218

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 8/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+  L  ++   L +E F V     GE G+ +     +D +++D+ L    G+
Sbjct: 1   MRVLVVDDEVGLVRALRRGLTAEGFAVDAAHDGETGLAMAVDGAYDVLVVDVMLPRRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+ ALR   + TPV +LS      D   GL  GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  DVVTALRALDVWTPVLMLSAKDGEHDVADGLDVGADDYLTKPFSFVVLVARLRALVRRPV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G L+++   + V   G  + LT +E  ++E L    +  + K   L+H++D
Sbjct: 121 APRPAVLRAGALTLDPATREVTRDGRPVDLTARETALLEYLLRHADRVVGKIELLDHVFD 180

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G ++P V  ++V++  LR+KL     G++ + TV G GY
Sbjct: 181 TGGEDPNV--VEVYVGYLRRKL-----GRDAVLTVRGTGY 213


>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
 gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQID-SSIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQLH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   I+L L+S  + + + +   D I        D  I D+ L ++ G  
Sbjct: 4   RIYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPELDGIS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    + P+ ILS      DKVRGL SG DDY++KPF   EL AR+R+++RRS+ 
Sbjct: 64  AIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQH 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H++ +I T  L ++     +  QG ++ LT KEYQ++  L   K   + +E  LN+++  
Sbjct: 124 HSK-VIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E + +DV I  LR KL +   G +YI+T+   GY   E+ +
Sbjct: 183 DFVGESRALDVHIRSLRAKLGD--DGHHYIKTIRSVGYRFIEDGQ 225


>gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
 gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           IL++ED+  +   I L L+   FNV     GE+ +E+ + ++  D  +LD+ L  I GFE
Sbjct: 4   ILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       V +L+     ++ ++GL  GADDYI KPF+  EL+ARI++++RR   
Sbjct: 64  VCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRRINL 123

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +   LI +G   +N   +++  +G +I LT  EY ++  L    +  ++++  LN ++
Sbjct: 124 NMKDGDLIHSGPFVLNNLEESLYKKGKKIELTPTEYMILFQLMYNSSKPISRDELLNTIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E E K++DV I ++R+K+        Y+ T+WG+GY+ + + +
Sbjct: 184 GEHYEGETKVVDVNIRRIRQKIELNPSDPQYLLTIWGKGYIWKVSVR 230


>gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               +LI   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N + 
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   +    G +  ++    + D ++LD+ +    GF V
Sbjct: 4   VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R A  + P+  L+   + +DKV+GL  G DDYI KPF  +ELVARI A++RRS  +
Sbjct: 64  CQSIR-AMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V G + ++  A+ V V G  I LT KE++++ L         T+E  L  +
Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D       + +D  I  LR KL   A    +I+TVWG GY
Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGY 221


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L +D++++   +E ++  + ++      G + + + +    D +ILD+ +  + GF
Sbjct: 1   MKIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ ILS    I DK  G ++GADDY+ KPF+  EL  RI A++RR  
Sbjct: 61  DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A     +  I  GDL +        ++G R+ LT KE++++  ++       T++  L
Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++      E+  I VFICK+R+K+        Y++TVWG GY   E 
Sbjct: 181 TYVWGEDYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKFGEK 229


>gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 119/203 (58%), Gaps = 3/203 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVWA 180

Query: 181 GRDEPEVK--IIDVFICKLRKKL 201
             ++ ++    + ++I  LR+KL
Sbjct: 181 NDEDEDLDEGFVWIYISYLRQKL 203


>gi|311696859|gb|ADP99732.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +LIEDD  LA+++  ML+ E   V   D G+  +       FD  ILDL L  + G +++
Sbjct: 1   MLIEDDHLLANTMLGMLRDEQNTVDWLDDGQQALNALLNDSFDLAILDLTLPRVDGLDIV 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R   I TPV IL+    +++K++GL +GADDY++KPF   EL ARIRA+ RR  G  
Sbjct: 61  KKVRSQGIETPVIILTARGDLDEKLQGLNAGADDYLTKPFAMAELKARIRAVTRRGAGFR 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +  G L ++ D+  +++      L   E+Q++  L    +   T+      LY    
Sbjct: 121 TGGLQVGRLILDPDSGQLKLGTETAALPRSEFQILHYLMRHPDQVATRRRLEEQLYGWEQ 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             E   ++V +  LR+++     GK  I TV G GY+L   A  E  
Sbjct: 181 GAESNALEVHVHHLRRRV-----GKQTIRTVRGVGYMLDSKAAAEVS 222


>gi|119490531|ref|ZP_01622973.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453859|gb|EAW35015.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 225

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      I   L      V   + G+    L    ++D +I D  L  + G 
Sbjct: 1   MRILLVEDDIEQLEPIRTALSQAGHIVDGVETGDTAQWLMGETDYDLLIFDWMLPAVSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R  R    + PV +L+   +  DKV GL SGADDY+ KP +  EL+ARIRA+ RRS 
Sbjct: 61  ELCRTYRSMGKTAPVLLLTAKDTTADKVIGLDSGADDYLVKPIDLLELLARIRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL    V+ +  ++ L+ +E Q++E      N  L+++     L++
Sbjct: 121 HWLGDSLKLGDLELNLARLCVQREEKQVQLSVRESQLLEYFLRHPNQVLSRDQIEQSLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + PE   +   + +LR++L       N+IETV+G GY
Sbjct: 181 WDNPPESNAVSTLVRRLRQRLGQVDAA-NWIETVYGLGY 218


>gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   L+     V     G     L +  EFDA +LDLGL    G 
Sbjct: 1   MRILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R      PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  R    +++     H+Y 
Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ +LRKKL   +     IETV G GY L E A 
Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVEGAP 221


>gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+ +A  I   L+S  + V             +    D ++LD GL D  G 
Sbjct: 1   MHVLLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++   R A    PV +L+   +I D++ GL +GADDY+ KPF+ +ELVAR+ A++RR+ 
Sbjct: 61  TLVEEWREAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV G L  +  A+ V  +G  + L+ +E  ++E       + L+     + LY 
Sbjct: 121 GRAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+K++ A      IETV G GY L
Sbjct: 181 LDDEVESNALNVHIHHLRRKVAPA-----VIETVRGLGYRL 216


>gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens
           Pf-5]
 gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 16/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++LL+EDD+ LA  I   L    F V     G+    L  F EF    ++LDL L    G
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTA--LAAFLEFKPKLVVLDLMLPGQSG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R A   TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR 
Sbjct: 66  LHVCREIR-AVADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQ 124

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +L   +  G LS++ +++ V + G  + LT  E++++ LL+     TL+++  LN
Sbjct: 125 VPETTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILN 184

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +    +DG +    + +DV+I KLR KL +       I+TVWG+GY+    A
Sbjct: 185 RMRGIEFDGLN----RSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFNPFA 233


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +   +   L+ E F V     G   +EL K      ++LDL L  + G 
Sbjct: 1   MKVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGL 60

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V R LR    +   P+ +L+  +   DKV GL+ G DDY++KPF  +ELVAR++A++RR
Sbjct: 61  DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S       ++  G L ++LD  TV ++   + LT KE+ +++ L L K   LT+E  L+ 
Sbjct: 121 SEEVQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDR 180

Query: 178 L--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  Y+   E E + +DV + +LR+KL   A     I TV   GY   +++
Sbjct: 181 VWGYERASEIESRTVDVHVRRLREKLGPEAA---RIVTVKSVGYRFNQDS 227


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    S     DL   LD KT EV+     I LT +E+ ++  L   +N  L +E  + 
Sbjct: 124 VKEEQNSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  ++DV+I  LRKK+ +       I TV G GYVL+
Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226


>gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++   L +E F V VT  G  G+       +D I+LDL L    G+
Sbjct: 1   MRVLLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   + TPV +L+      D+      GADDY++KPF+   LVARIRA++RR  
Sbjct: 61  DVLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++  +++V      I LT +EY ++  L       ++K   L++++D
Sbjct: 121 PERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +++V+I  LR+K+ +   G   + TV G GY+L
Sbjct: 181 PAFEGGDNVVEVYIGYLRRKI-DVPFGLQTLATVRGMGYML 220


>gi|242372530|ref|ZP_04818104.1| KDP operon transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
 gi|242349747|gb|EES41348.1| KDP operon transcriptional regulator [Staphylococcus epidermidis
           M23864:W1]
          Length = 232

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/216 (34%), Positives = 120/216 (55%), Gaps = 10/216 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+A+ H I++ L    + V     G +     +    D I+LDLGL DI G  +
Sbjct: 5   LLVVEDDEAILHLIDVALTMNYYKVIKAKNGREAEFRIRTEHPDIILLDLGLPDIDGLSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ LR   + TP+ ++S  +  E  V+ L  GA+DY++KPFN +EL ARIR  +R SR  
Sbjct: 65  IQQLREC-VDTPIIVISARTEEETIVKALDCGANDYMTKPFNIDELQARIRVALRVSRKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+    G L+++ + K+V + G  IHLT  E+Q++E+LS      LT ++ L  L+ 
Sbjct: 124 DTEQNNFENGPLTIDFNGKSVYIMGQSIHLTPNEFQLLEILSRHVGKVLTYQILLKSLFG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
             ++ E+  + V +  LRKKL       NY E + G
Sbjct: 184 YVNKCEMASLRVHMASLRKKL-------NYSENIDG 212


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L   I + L+ E ++V  T  G + I++ +    D +ILD+ L D+ G  V
Sbjct: 7   ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLTV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+ +L+  +  ED + GL  GADDY+ KPFN +EL+ARIRA++RR    
Sbjct: 67  CQKVR-EFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPAT 125

Query: 123 AQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + L V  +L S++   + V V+G  + LT  EYQ++ +L+      +T E  L  ++  
Sbjct: 126 NRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWGS 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +   + V+I  LR+K+         + T WG GY
Sbjct: 186 EPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGY 223


>gi|320546797|ref|ZP_08041105.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448543|gb|EFW89278.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 224

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G +G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVMQVFD-GAEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR   +STPV I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QILKELREKCVSTPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L+ +    T  V G ++ L GKE+ ++      +N  L K    + ++ 
Sbjct: 121 KFNNNTLSYHELTADTSTNTTTVNGEKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  + +++V++ K+RKKL   +   + ++T+   GY+L++
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTSFADS-LQTLRSVGYILKD 222


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE+ + L    + D ++LD+ L  + GF V
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 86  CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 145 SAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|299065501|emb|CBJ36670.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 235

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLARALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++   +     ++V + +LRKKL   AG    I TV G GY+L   A
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222


>gi|291523001|emb|CBK81294.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  + + I   LK+  +       G   +     +  D ++LDLGL D+ G E+
Sbjct: 6   VLVVEDDTPVRNLITTTLKTHEYRYLSAQNGASAVLEALSHNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R +  + P+ ++S  +   DK+  L +GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IRKIR-SWSNMPIIVISARTEDSDKIGALDAGADDYLTKPFSVDELLARLRVTQRRLALM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +   G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 KADTAQETPIFTNGALKIDYAAGCAYIDGAELHLTPIEYKLLCLLSKNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + VF+  LRKKL N   G+ YI+T  G GY
Sbjct: 185 QIWGSSWENDIASLRVFMATLRKKLENGKDGQQYIQTHIGIGY 227


>gi|257438091|ref|ZP_05613846.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
 gi|257199422|gb|EEU97706.1| KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium prausnitzii A2-165]
          Length = 243

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 6/236 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+  +   IE +L++  +   V +    G  L   +  D IILDLGL D  G 
Sbjct: 8   FKVLVVEDEANICSFIETLLETNGYQALVANTCAMGQTLFTSHNPDLIILDLGLPDRDGL 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R +R  K  TP+ +LS  ++ +DK+  L  GA+DYI+KPF   EL+AR+RA +R +R
Sbjct: 68  ELIRFVR-QKFLTPIVVLSARTTEQDKIEALDLGANDYITKPFGTGELLARVRAALRTNR 126

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G    L     L +N + + V V G  I LT  EY ++  LS      +T    +
Sbjct: 127 FGVLGGMPGGLFRAQGLEINYERRKVFVDGAEIKLTQTEYNIVAFLSEHAGRVMTYAAIV 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             ++   D    K + V +  +RKKL +  G   YI    G GY + +   D   E
Sbjct: 187 RAIWGDTDCGSTKKLQVNMANIRKKLGSVPGRNTYILNELGVGYRMIDEDTDARPE 242


>gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016]
 gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 236

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDKALA  IE  L  E ++V       + +E      FD ++LD+ L D  G++
Sbjct: 8   KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   PV  L+      + V GL  GADDYI+KPF  +E V+RI+AI+RR+  
Sbjct: 68  VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     +     + L+A+T+E   +GH + L+ +EY+++ L        +++E  L++L 
Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E  +   + V+I ++R+K+   +    YI+T  G GY
Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGY 227


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 11/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESVT-LLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 63  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 122

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 123 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 183 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E  +V +   G D +       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ + S++++V GL +GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  G L ++L A+ V  +G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+         I+TV G GY
Sbjct: 181 DISFDPMTNVVETHISRLRAKVDKPF-TTELIKTVRGAGY 219


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++L+  +  +L+ E F V + D G   +   + +  D ++LDL L   PG E
Sbjct: 3   RILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R+     PV +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR +G
Sbjct: 63  VIRQIRLNS-QVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRR-QG 120

Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + LI      G + ++++   V V+   + +  KE++++E+L       LT+   ++ 
Sbjct: 121 EGEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+         + TV G GY
Sbjct: 181 VWGSDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGY 222


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK +NF VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGETQLIHTVRGVGYVLR 230


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 227


>gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36]
 gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36]
          Length = 288

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD+ LA  +   L  E+F+V +   GE G+   +  ++D ++LD+ +  + GFE
Sbjct: 64  KLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAIRGNQYDMVLLDVMMPKLNGFE 123

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LRV   + PV +L+      D+V GL+ GADDY+ KPF++ EL+ARIRA++RR   
Sbjct: 124 VLKKLRVDN-NIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLRRIEP 182

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  L+   D+ +N   +    Q   + LT  E  ++E L     T LTK      +
Sbjct: 183 PTTKKTELLTHLDIEINSRTQEAWCQTILLDLTSTELMLLEALISSPGTILTKADLSEQV 242

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +  P  + ID+ +  LRKKL      K  I T+ GRGY+
Sbjct: 243 LGKKLTPFDRSIDMHLSNLRKKLPERKDEKMRIRTLRGRGYM 284


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++++A   +  L+   F V +   GE G +     +FD  ILDL L  I GF 
Sbjct: 3   RILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ I+S      DK+ GL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREKK-NTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 119 --SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S G  ++ +I    + ++  A+ V V     + T KE+ ++  L+   N   TKE   
Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 QKIWNMDSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRFK 228


>gi|242239495|ref|YP_002987676.1| DNA-binding transcriptional regulator PhoP [Dickeya dadantii
           Ech703]
 gi|242131552|gb|ACS85854.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 223

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + +      V      ++       +  D  I+DLGL    G 
Sbjct: 1   MRILVVEDNVLLRHHLTVQMNELGHQVDAAADAKEADYFLHEHAPDIAIVDLGLPVEDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  +   P+ +L+   S ++KV  L++GADDY++KPF+ EE++ARI+A++RR+ 
Sbjct: 61  SLIRRWRARQEKLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVMARIQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      V+L  + + V G  + LT  EY +IE L       ++KE  +  LY 
Sbjct: 121 GLASQVISLPPFEVDLSRRELMVHGAPVKLTAFEYTIIETLIRNIGKVVSKESLMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKKL  AA     I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKL-QAANTNEVITTVRGQGY 218


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+G +L      D +ILDL L  I G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K+  P+ +L+      DKV GL+ GADDY++KPF+  E++AR++AI+RRS  
Sbjct: 64  VCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQA 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R   +  +  GDL V  +        + + LT KE++++  L+  +   LT+
Sbjct: 124 VIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E 
Sbjct: 184 DQLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEEQ 236


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL L  E ++V     G +G++  +   FD IILD+ L  I G E
Sbjct: 5   KILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + P+ +L+    + DKV GL  GA+DY++KPF  EEL+ARIRA ++  R 
Sbjct: 65  VLRKIRQTS-TIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G+L ++ D   V      I LT KE+ ++      KN  LT++  L  ++
Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV+I  LR K+ +    K  I TV G GY+L+
Sbjct: 184 GYDYIGDTNIVDVYIRYLRSKIDDKYNIK-LIHTVRGVGYILK 225


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G   ++  + +   A+I+D+ +  I GF 
Sbjct: 13  RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I  PV  L+    ++DKV GL  GADDYI+KPF+ EE+VAR+R ++RR+ G
Sbjct: 73  LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRA-G 131

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H       S I   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+
Sbjct: 132 HGAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILD 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++      EV +++ ++  LRKK+    G +  I T+ G GYV+R   +
Sbjct: 192 HVWRYDFGGEVGVVETYVSYLRKKVDT--GERRLIHTLRGVGYVMRAPGR 239


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 133/223 (59%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++ +   I + L +E + V     GE+ +   +   +D IILD+ +  + G 
Sbjct: 4   LRVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGI 63

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            V + +R V+K+  P+ +L+  +   D++ GL+ GADDY+ KPF+  ELVARI+A++RR+
Sbjct: 64  AVCQEIRRVSKV--PIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRA 121

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++    ++    + ++L ++ ++V+   + LT KE++++ LL+     + ++E  L 
Sbjct: 122 GTESKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +D  + +LR KL  AAG  N+I+TVWG GY
Sbjct: 182 EVWGFDYYGDVRTVDTHVNRLRDKL-RAAGAPNFIKTVWGVGY 223


>gi|223983544|ref|ZP_03633727.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM
           12042]
 gi|223964472|gb|EEF68801.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM
           12042]
          Length = 237

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 130/229 (56%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ LA  ++  L+   + V     G DG+ L    ++  ++LDL L  + G 
Sbjct: 10  MKLLIVEDEEDLAMGLKRGLRKNGYEVEWIGEGRDGLALALAEDYGCVLLDLNLPGLDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  K    V ILS   S+ DKV+GL  GADDY+ KPF+ EEL+ARIR +  R  
Sbjct: 70  DLLRRLRAEKPQQKVLILSARGSVGDKVKGLDLGADDYLVKPFHFEELLARIRNLTGRRF 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++  +  V V+  R+ LT KE Q++E L+L +   L+ E  ++ ++ 
Sbjct: 130 IRQDVVVCRGSLRIDTGSHQVYVRDQRLKLTAKETQILETLALHEGKRLSAETIISQVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             ++       V +  LR+KL+ AA G+++IE   G GY L+EN  ++ 
Sbjct: 190 EDEDLFSNAFKVHLSSLRRKLA-AASGEDWIECQRGLGYCLKENPNEKA 237


>gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 246

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G D ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKVD--AVHPPMIHTVRGAGYVIKP 244


>gi|229119055|ref|ZP_04248396.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664407|gb|EEL19907.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 4/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I L +K   FNV  TD GE  ++L + +  D IILD+ L  I GF+V
Sbjct: 4   ILVLDDEITIRSFITLKMKHAGFNVLETDTGEKALDLLENHNVDIIILDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     +D+V GL  GADDYI KPF+  ELVAR+++++RR +  
Sbjct: 64  CKQIRKNNEKIGIIMLTSRVQGKDQVHGLTIGADDYIKKPFSINELVARVQSLLRRVKET 123

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +  I +    +N+  + +   G +I LT  EY ++  L       + ++  LN ++ 
Sbjct: 124 KKDMASIHSEPFKLNILQEKLYKDGIKIDLTPTEYIILRYLMENSIKPIPRDELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                + K++DV I +LR+K+  +     ++ TVWG+GY  R N + +
Sbjct: 184 INCLSDTKVVDVNISRLRQKIEPSPSNPQFLLTVWGKGY--RWNGRKQ 229


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L+ E F V+  D GE+ +E+    +    ILD+ +  + G E+
Sbjct: 16  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  L   ++  L+ + + +     GE+ +E  K    D I+LDL L  I G +
Sbjct: 4   KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKIDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+    TP+ +L+       K+ GL+ GADDY++KPFN  EL ARI+A++RR + 
Sbjct: 64  VCQQIRLNS-QTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +    I   D  +N   + V ++G  ++LT KE+ ++ LL+       ++E  L  
Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV I +LR+K+   +    YI T WG GY  R
Sbjct: 183 IWGYEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYFR 227


>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 6   ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E   
Sbjct: 124 MSGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+TVWG GY
Sbjct: 184 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 227


>gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341]
 gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341]
          Length = 228

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F++   + GE G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVS-DEVDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   DL V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LPPKNSDVIECQDLQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSVEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERQDGKARIKTLRGRGYLM 224


>gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
          Length = 221

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 118/201 (58%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +   ++S N++V     G D +EL K   +D IILD+ +  + G 
Sbjct: 1   MKILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + I+D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+  + + V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             D+   +++ ++I  LR+KL
Sbjct: 180 DEDDANEEVVWIYISYLRQKL 200


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   + L L+ E F V +   GE+ ++  K      IILDL L  + G++V
Sbjct: 6   ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R +R  K S  P+ +L+      DKV GL+ GADDY++KPF+  ELVAR++AI+RR+  
Sbjct: 66  CREVR--KFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRATP 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q+    ++    L++N  ++ V V    + LT KE+ ++  L+       T+E  L  
Sbjct: 124 EEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLTA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      +++ +D  I +LR+K+    G   +++T+WG GY
Sbjct: 184 VWGYDYYGDLRTVDTHIKRLREKVER-DGNTPHVKTIWGVGY 224


>gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227]
 gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227]
 gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74]
          Length = 219

 Score =  120 bits (302), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   +    + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|320450615|ref|YP_004202711.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
 gi|320150784|gb|ADW22162.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
          Length = 220

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 10/215 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDI-- 57
           MRIL++ED+  +A  + L+L  E +   +  DL     E     E   ++LD+ L +   
Sbjct: 1   MRILVVEDEPDIAEPVTLLLSREGYEAAWAPDLDSAWEEFLA-AEPALLVLDVMLPEGED 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF   R +R    S  +  L+   S+ED+V GL  G DDY+ KPF  EEL+AR+RA++R
Sbjct: 60  AGFTFARQVREGGYSGSILFLTARDSLEDRVAGLNLGGDDYLVKPFALEELLARVRALLR 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R   H       GDL+V+L A+    +G  I LT KE+ ++E L L  +   T E   + 
Sbjct: 120 RGAQHKGGRFQRGDLAVDLVARKAYWKGEEIGLTLKEFALLETLCLNPDRLFTPEELADR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLS-----NAAGG 207
           L+ GRD   V+++ ++I +LR+KL+       AGG
Sbjct: 180 LFPGRDT-AVRMVRIYIHRLRQKLAPEVVRTGAGG 213


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +D+  +   +E  L  +   V +   G + +EL +  E D ++LD+ + ++ GF
Sbjct: 13  LKILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  +R A+   P+ +L+ +  + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR+ 
Sbjct: 73  AVVERIR-AQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRAN 131

Query: 121 GH----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       A +++V GDLSV+ + +       RI LTG E+ ++ELL  R    ++
Sbjct: 132 TSQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPIS 191

Query: 171 KEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   L  ++  + E   + +++DV I +LR KL +       I T  G GY+ +  A+
Sbjct: 192 RLDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMFQRIAQ 249


>gi|317501873|ref|ZP_07960058.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316896763|gb|EFV18849.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 235

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   +  +LK  ++ V   D G+ G+E+ +    D I+LDLGL DI G  +
Sbjct: 6   VLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMIRSRCPDLILLDLGLPDIDGCSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    STP+ ++S  ++  +KV  L  GADDYI+KPF   EL+ARIRA +R    H
Sbjct: 66  IRDVRTWA-STPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR----H 120

Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +  L+             DL ++   + + ++G+ +HLT  EY+++  L+      +T  
Sbjct: 121 SNRLLTDSTFYIRPYRHKDLILDFSKRLLTIRGNAVHLTPIEYKIVAYLAQNSGKVITYA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L++++    + + KI+ V +  +R+K+        YI T  G GY + E+
Sbjct: 181 SILSNVWGPYADNDNKILRVNMANIRRKIEEDPAQPQYIFTEVGVGYRMAED 232


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +++E +       G++ +  L    +   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  IEVVKEVR-KDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             H  +    ++  G L++N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +A  IEL LK E ++V     G++ ++  + +  D  ILD+ +  + G+EV
Sbjct: 6   ILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKLDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R  +   P+  LS  +S  DK+ GL  GADDY++KPFN  EL+AR+ A +RR    
Sbjct: 66  IRQIR-EQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQM 124

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q        +  G + +  D + V + G  I LT KE+ ++ LL+       + E    
Sbjct: 125 SQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFSTENIFQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 185 HVWGEAYFETSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTF 229


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  +++  L +  + V+    GE+ +E    +  D I+LDLGL  I G E
Sbjct: 7   RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  + + P+ +LS   +  DKV+ L  GADDY+SKPF   E++AR+R  +R S  
Sbjct: 67  VCRKVR-EQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +   G L V+   + V+V+G  + LT  EY +++ L       +T++M L+ +
Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V+I +LR+K+        +I T+ G GY
Sbjct: 186 WGTGYGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGY 226


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   ++L L+ E ++V     GE+G+E  K   +D I+LDL +  + G EV
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+    I +KV  L  GADDY++KPF  EEL ARIR  +R     
Sbjct: 64  CKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 122

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + +  +  D L +NL    +      I LT  EY +   L L K   +++E  LN ++  
Sbjct: 123 SNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E KI+DV+I  LRKK+        +I TV G GYVL++ +
Sbjct: 183 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKKES 224


>gi|28870763|ref|NP_793382.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71737671|ref|YP_275453.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213968943|ref|ZP_03397083.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|289625628|ref|ZP_06458582.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646477|ref|ZP_06477820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298487733|ref|ZP_07005774.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|301382821|ref|ZP_07231239.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062977|ref|ZP_07254518.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302134596|ref|ZP_07260586.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|302187955|ref|ZP_07264628.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
 gi|28854011|gb|AAO57077.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71558224|gb|AAZ37435.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213926242|gb|EEB59797.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|298157825|gb|EFH98904.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323963|gb|EFW80047.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328099|gb|EFW84104.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869074|gb|EGH03783.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330875974|gb|EGH10123.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330876559|gb|EGH10708.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330953840|gb|EGH54100.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
 gi|330986579|gb|EGH84682.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331015882|gb|EGH95938.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 229

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + LK + FNV     G +G+++ + +  DA ILD+ +  + GF
Sbjct: 13  VKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   +  PV  L+   ++E+++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 73  ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG- 131

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G  +S      +   DL++N +   V   G  + L+  E+ ++  L L     L+K   L
Sbjct: 132 GSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKIL 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 192 DNVWHYDFGGDGNVVESYISYLRRKVDTHE--PQLIQTVRGVGYVLR 236


>gi|289678852|ref|ZP_06499742.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
          Length = 236

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 12  MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 72  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 131 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 191 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 229


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 119/233 (51%), Gaps = 17/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + STPV +++    +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRG---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R+            A   +  G ++V L  + V V G  + LT KE+ ++ LL+ R    
Sbjct: 120 RTGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 FRREQIISEVWRTSWEGTGRTLEVHVASLRSKLGMPA----LIETVRGVGYRL 228


>gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-23m63]
 gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08]
 gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07]
 gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08]
 gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL K  E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIELSK-NEPDLIILDIMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +A+R   +  P+  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +    L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFEKLCLYMKERAIKIDGKDIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   + K+R K S     K YI TVWG GY
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 225


>gi|162147357|ref|YP_001601818.1| transcriptional regulatory protein kdpE [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785934|emb|CAP55510.1| putative transcriptional regulatory protein kdpE [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+   +   L ++++ V     G   +   K  E D ++LDLGL D+ G E
Sbjct: 5   RVLVVDDEPAIRRLLRTSLATQDWRVIEAGNGISALAAVKAEEIDVVLLDLGLPDMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+R +R+   + P+ +LS       KV  L  GADDY++KPF   ELVAR+RA +R +  
Sbjct: 65  VIRQIRLVLPTLPIVVLSVRDDERGKVAALDLGADDYVTKPFGMAELVARLRAALRHALQ 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L V+GDLSV+L  + V   G  +HL+ +E+ ++ LL       LT +  L  L+
Sbjct: 125 KEGTIPLYVSGDLSVDLVRRIVTRSGEEVHLSPREWDILRLLIRHAGRVLTHKHILGQLW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +V+ + V+I +LR+KL        +I T  G GY L
Sbjct: 185 GANG--DVQQLRVYIRQLRQKLEINPERPRHIITETGIGYRL 224


>gi|289674703|ref|ZP_06495593.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330898490|gb|EGH29909.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330937668|gb|EGH41572.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950073|gb|EGH50333.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330981459|gb|EGH79562.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 223

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D++ LA  +   L+ E+F V V   G D + L +  + D ++LDLGL  + G E
Sbjct: 18  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR    +  V +L+  S+  D + GL  GADDY++KPF+  ELVARIRA++RR   
Sbjct: 78  VCRQLRTFSDAY-VVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 136

Query: 120 ----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     RG  ++  V G LS+++  + V +    + LT  E+ ++ +LS R     
Sbjct: 137 APVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 196

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +  ++         ++DV +  LR+KL +      Y+ TV G GY
Sbjct: 197 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGY 246


>gi|54302523|ref|YP_132516.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
 gi|46915945|emb|CAG22716.1| putative DNA-binding response regulator [Photobacterium profundum
           SS9]
          Length = 199

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 114/197 (57%), Gaps = 6/197 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           M+IL++ED+  L   I   L+S   N ++ +L  DGI+         +D I+LDLGL  +
Sbjct: 1   MKILVVEDEITLGEQIIDGLES---NGWIAELSSDGIDALYRATSEPWDVIVLDLGLPKL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL+++R   ++TPV ILS  + +  +V GL +GADDY++KPF   EL+AR+RA +R
Sbjct: 58  DGLTVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G+A  +I   +LS++     V  QG  + LT  +++++  L    +  +++   + H
Sbjct: 118 RSTGNASPVIQVQELSLDTRTSNVLWQGQVVDLTALKFKVLSYLMHNTDKVISRTELVEH 177

Query: 178 LYDGRDEPEVKIIDVFI 194
           +Y    + +   I+VFI
Sbjct: 178 IYKQDFDRDSNTIEVFI 194


>gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
          Length = 234

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLQIGQTSLNVGEHEL-ISSNSIRLAGKESRMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E F V +   G  G+++ +    D IILD+ L  + G  
Sbjct: 3   KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L    A  + P+ +LS      DKV GL+ GADDYI+KPF+  EL+AR++A +RR 
Sbjct: 63  VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       I  G L ++ D   V V G +  LT KE++++  L+       +++  L
Sbjct: 123 TTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      + + +DV I  +R+KL    G   +IETV G GY  +E 
Sbjct: 183 EQIWGYEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRFKEG 231


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + LK + FNV     G +G+++ + +  DA ILD+ +  + GF
Sbjct: 9   VKVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   +  PV  L+   ++E+++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 69  ELLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG- 127

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G  +S      +   DL++N +   V   G  + L+  E+ ++  L L     L+K   L
Sbjct: 128 GSVESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKIL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 188 DNVWHYDFGGDGNVVESYISYLRRKVDTHE--PQLIQTVRGVGYVLR 232


>gi|302530944|ref|ZP_07283286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439839|gb|EFL11655.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 250

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G + + + + +  DA++LD+ L D  G 
Sbjct: 24  VRVLVVDDESTLAELVSMALRMEGWEVRSAGTGAEAVRIGRDFRPDAVVLDVMLPDFDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+  R+RA++RR+ 
Sbjct: 84  EVLRRMRAETPYLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAG 143

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G   S +V GDL+++ D++ V   G  + LT  E++++  L       L+K   L+ 
Sbjct: 144 GVSGATGSQLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPRRVLSKAQILDR 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      +  I++++I  LRKK+   A  +  I T+ G GYVL+  A
Sbjct: 204 VWSYDFGGQANIVELYISYLRKKID--ADREPMIHTMRGAGYVLKPAA 249


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G   +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|219523854|gb|ACL14890.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica]
          Length = 224

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L    ++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRLHPKVHLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A    + I TV G+GY+ 
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTVRGQGYLF 221


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K L   I+  L+ E +  +    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ LR + ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLKTLRQS-MTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  Q+ I+   +L +++    VE     I LT +E++++  L L K    ++E  L  +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +++ +DV I +LR+K+ +      +I T  G GY
Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGY 223


>gi|317499546|ref|ZP_07957810.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893200|gb|EFV15418.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 224

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     E   D I+LD+ +  + G
Sbjct: 4   KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIEMKPDIILLDINMPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 61  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +I++++D+  +   +   L  + ++V     GE+ ++L  FY   E   IILD+ L  + 
Sbjct: 12  KIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDL--FYQDHEIGLIILDVMLPKLS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V R +R      P+ IL+  S  +D+++G   G D+YISKPF+ + LVAR++AI+RR
Sbjct: 70  GFDVAREIRETS-KVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRR 128

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S    Q+ L+  G + ++  A TV V G  I L+ KE++++      +   L++E  LN 
Sbjct: 129 SGVEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNS 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D     + + ID  + KLR K+       +YI T+WG GY
Sbjct: 189 VWDYDYFGDARTIDTHVKKLRAKIGEKG---SYIRTIWGMGY 227


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ + +L    +   IILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVIKQVR-KDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G   +    ++  G L++N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TV G GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGY 224


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+LIED+ ++   I+  L+   + + V   G  G++L +  +FD +ILD+ L ++ G +
Sbjct: 3   KIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+  L+ + + E+ V GL+SG DDY+ KPF   ELVAR+++++RRS  
Sbjct: 63  VCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSNN 122

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +    I              DL VN   K V   G  I LT  EY+++          ++
Sbjct: 123 NGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   L+ ++    E    ++DV++  LRKKL N    K  I TV G GYVL++
Sbjct: 183 RAEILDAVWGVNYELGTNVVDVYVNYLRKKLDNQEDNK-LIHTVIGMGYVLKK 234


>gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
 gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756]
          Length = 234

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   ++  L+ E +       G +   + +   +  I+LDL L  IPG EV
Sbjct: 11  VLIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLMLPGIPGEEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R  K +TPV IL+   +I+DKV  L+ GADDY++KPF+ +E+ AR+   +RR+   
Sbjct: 71  LRDIR-KKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 129

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R   +      +L +N    TV+V    + H+T +E+ ++ELL        +KE    +
Sbjct: 130 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ +   E K +DV I  +RKK+  A   K YIETVWG GY L
Sbjct: 190 AWEEQYMGETKTLDVHISNIRKKIK-AVTDKEYIETVWGIGYRL 232


>gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY+++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYLVQKD 224


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +        I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +   L    F V     G+  + +      DA++LD+ +  I G +
Sbjct: 9   RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      PV +LS +  + D++ GL +GADDY+ KPF+  EL  R+RA++RR R 
Sbjct: 69  VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    + ++ DA+TV   G  + LT +E+ ++E+L       LT++  L+ ++  
Sbjct: 129 VPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWGY 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +     +D  +  LR+KL  A      + TV G G+ LR
Sbjct: 189 DFQVRSDAVDTVVSYLRRKL-EADDRPRVLHTVRGVGFALR 228


>gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
 gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 128/226 (56%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL++EDD +A A+  +   ++   + + +D GE G+ +     +DA+++D  L    G
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVSDHASD-GESGLFMASENAYDALVVDRMLPRRDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR 
Sbjct: 64  LSLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q ++   GDL ++  A +V  QG  I L  +E++++E L       +T+ M L ++
Sbjct: 124 GTPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV + +LR K+         + TV G GY+++++
Sbjct: 184 WDYHFDPQTNVIDVHVSRLRSKIEKDF-EPPLLRTVRGAGYMIKDD 228


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L  E F V +   G   +   + +E   I+LDL L    G E
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +  + +LS      DKV GL +GADDY+ KPF   ELVAR++A++RR R 
Sbjct: 73  VCRRIRTFSDAY-ILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + L     L +++ A+TV V  + + LT  E+ ++  L+ R +   ++   +  +
Sbjct: 132 SSLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +  I+DV +  LR+KL + A    +I TV G GY LR +
Sbjct: 192 WGSSWFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSLRSS 237


>gi|282601049|ref|ZP_05980532.2| DNA-binding response regulator DltR [Subdoligranulum variabile DSM
           15176]
 gi|282570439|gb|EFB75974.1| DNA-binding response regulator DltR [Subdoligranulum variabile DSM
           15176]
          Length = 232

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 12/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IEDDK L   +   L+    +      GE G+EL     +DA  LD  L  + G 
Sbjct: 4   VRILIIEDDKNLCQIMRAGLQDAGIDSDFCHDGETGLELLLHNCYDACCLDRMLPSMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R AK+S PV +L+ M  ++DKV GL++GADDY++KPF   ELVAR+ A++RR  
Sbjct: 64  TILKKARAAKVSAPVLMLTAMGGLDDKVDGLEAGADDYLAKPFAMRELVARLHALLRRP- 122

Query: 121 GHAQSLIVTGDLSVN-----LDAKTVEVQGHRIH--LTGKEYQMIELLSLRKNTTLTKEM 173
             +Q++ V     ++     LD   +E+ G + H  L+ KE  ++E+     +   T+E 
Sbjct: 123 --SQAMAVEESNQIHYEDATLDCNQLELCGPKGHCQLSKKEADLLEVFFRYPHQLFTRER 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L+ ++    E E   ++ +I  +RKKL   AG    I T+ G GY L EN  D
Sbjct: 181 LLSRVWGDDTEIEESNLNTYIHFVRKKLKK-AGICLTITTIRGVGYRL-ENIHD 232


>gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDKALA  IE  L  E ++V       + +E      FD ++LD+ L D  G++
Sbjct: 3   KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   PV  L+      + V GL  GADDYI+KPF  +E V+RI+AI+RR+  
Sbjct: 63  VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     +     + L+A+T+E   +GH + L+ +EY+++ L        +++E  L++L 
Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  E  +   + V+I ++R+K+   +    YI+T  G GY
Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGY 222


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 121/220 (55%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD  +     + L+   F+V     G   +   + +  D ++LDL L ++ GF+V
Sbjct: 1   MLLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  +R  +   PV +L+ +   ED++ GL  GADDY+ KPF+  ELV+R+RA++RR   +
Sbjct: 61  LAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+    L V++  + V+     ++LT +E+ ++  L+       ++E  L+ ++
Sbjct: 121 PADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + + + +DV + +LR+KL  +     Y+ETVWG+GY
Sbjct: 181 GLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGY 220


>gi|24214711|ref|NP_712192.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657759|ref|YP_001845.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24195704|gb|AAN49210.1| response regulator containing a signal receiver domain and a
           DNA/RNA polymerase-binding domain [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600999|gb|AAS70482.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 240

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL ED+  +  +I+++L+SE F +     G++ I L K    D ++LD+GL D  GFE+
Sbjct: 22  ILLTEDEPGIRDTIQIVLESEGFKMIYAMTGKECISLLK-ESPDLLVLDVGLPDGSGFEI 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  K S PV +L+   S  D+V GL+ GADDY+ KPF+  ELVARI+A++RR  G+
Sbjct: 81  LKELR-KKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRRYDGN 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           ++      +   + D K +   G  + LT  EY+ + L   R     T+E  ++ ++   
Sbjct: 140 SEK--KQTEFLTDEDRKIIYYYGKSLSLTPYEYKTLLLFLKRPGKIFTREEIMDRVWTEP 197

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E   + +D  I  +R +L       + IET  G+GY L++ 
Sbjct: 198 EESFDRAVDTVIKNIRFRLKEIRPDLDPIETKRGQGYGLKDT 239


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    S     DL   LD KT EV+     I LT +E+ ++  L   +N  L +E  + 
Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  ++DV+I  LRKK+ +       I TV G GYVL+
Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLIHTVRGVGYVLK 226


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LDVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+ V G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENAVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FEKVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229


>gi|229592497|ref|YP_002874616.1| putative two-component system response regulator protein
           [Pseudomonas fluorescens SBW25]
 gi|229364363|emb|CAY52131.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+AL   I + L +E + +     G   +   +   FD ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDRALGQGIRVALGAEGYTLDWLQDGVAALHALRTESFDLLLLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  +   PV IL+      +++ GL +GADDY+ KPF+ EEL AR+RA++RRS+
Sbjct: 61  DLLQQLRAEQHDVPVLILTARDGTAERIAGLDAGADDYLVKPFDVEELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++    +S++   + V  Q   I +T  EYQ++  L +R    +T+E     LY 
Sbjct: 121 GRAQPMLEHAGISLDPATQQVRYQDADIIVTPMEYQLLHQLMVRPGKVVTRERLSRALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D  E   ++V I  LRKKLS        I TV G GYVL
Sbjct: 181 WQDRVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYVL 216


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  + +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWNEGPNVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   I   L+ + F++   + G + +   +    D ++LD+ + D+ GF
Sbjct: 5   MHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  L+  S  ED+++GL+ GADDYI KPF+  EL ARI   +RR R
Sbjct: 65  EVCQRIRQTS-QIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIR 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +  +S I  GD+ ++ D + V +    I+LT +E+ ++  L L +    ++E     L
Sbjct: 124 GLSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++       ++ +D  I  LR KL    G + +I+TVWG GY   E
Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEE 226


>gi|110801905|ref|YP_697561.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682406|gb|ABG85776.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E       +   D +EL      D IILD  L DI GF
Sbjct: 1   MKILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKERPDIIILDAMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
            ++  ++      P+ +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI    + I 
Sbjct: 61  NLIPKIKNID-DIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHIS 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + L + GDL++ LD +   ++   I+LT KE++++  L   KN   ++E  LN
Sbjct: 120 SDSKKKVKDLTI-GDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY L E
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGPC---QNYIKTLYKAGYKLDE 222


>gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 601

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +   L S+++ V     G++G +  + Y +D I+LDL L  + G 
Sbjct: 1   MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R LR +   TP+ +L+   +   KV GL +GADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                L+   +L   LD  T EV   G  +HLT KEY ++EL     +   +    ++ L
Sbjct: 121 SALPPLLEWNNL--RLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + P    +   I  LR+KL  A   ++ I+TV+G GY L+
Sbjct: 179 WSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLK 222


>gi|332526604|ref|ZP_08402711.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332110867|gb|EGJ11044.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 224

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTD--- 56
           MR+LL+EDD+ +  S+   L+ E   V +V D+      L     FD ++LDLGL     
Sbjct: 1   MRLLLVEDDRMIGESLRAALRLEGHAVDWVRDVAAARATLAS-ERFDCVLLDLGLPPGGP 59

Query: 57  -----IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
                  G +VLR LR    +TPV +L+   +  D+VRGL +GADDY+ KPF  +EL AR
Sbjct: 60  PGSPPADGLDVLRELRGRADTTPVIVLTARDASGDRVRGLDAGADDYLVKPFEFDELTAR 119

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           IRA+ RR  G A  L+  G ++++   + V   G  + L+ +E+ ++E L  R    L++
Sbjct: 120 IRAVTRRHGGRAAPLLTHGGVTLDPATRQVTKDGQPVLLSSREFAVLEALMQRPGAVLSR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + LY   D  E   + V++ +LR+KL     G ++I  + G GY L
Sbjct: 180 AQLEDRLYGWGDAVESNAVSVYVHQLRRKL-----GADFIRNMRGVGYFL 224


>gi|295100030|emb|CBK89119.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium
           cylindroides T2-87]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK++ + I   L++ ++     + G++ +   +    D ++LDLGL DI G EV
Sbjct: 6   VLVVEDDKSVRNLIVTTLQANDYPYTSAENGKEALSKIETERPDVLLLDLGLPDIDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ LR    + P+ ++S  S  +DK++ L  GADDY++KPF+ +EL+AR+R   RR    
Sbjct: 66  IKELRTWS-NMPIIVISARSEDKDKIQALDMGADDYLTKPFSVDELLARLRVTQRRLTMI 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   + S+   G L+++  A    V   ++HLT  E++++ LLS      LT       +
Sbjct: 125 SSNVSNSVFHNGKLTIDYSAGCAFVDEQQLHLTPIEFKLLCLLSKNVGKVLTHTYLTKEI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E ++  + VF+  LRKKL       +YI+T  G GY
Sbjct: 185 WGTSWETDMASLRVFMATLRKKLEAKDNSAHYIQTHIGVGY 225


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +    +  L+ E + VY    G +G +L   ++ D IILDL +    G+E
Sbjct: 23  RVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKDGWE 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 83  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQ 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V  +++ LT KE++++ L++       ++   
Sbjct: 142 VPIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E    I+ V + +LR KL        +I TVWG GY    N   ET
Sbjct: 202 LELIWDTEHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPNGGSET 256


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL EDD  L  ++   L++E + V     G+  +       +D I+LD+ L    GF+
Sbjct: 4   RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR ++I  P+ +L+    + DKV GL+SGADDY++KPF   EL+ARI A++RR+  
Sbjct: 64  VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R         G ++V+     V   G  + L+ +EY+++  L      T+T+E  L  +
Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV +  LR+KL        Y++TV G GY L
Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   + D G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LDVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 215

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L     +  ++LD+ +  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V+GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  EVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     ++ 
Sbjct: 121 GLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE   + I+++I +LRKKL    G    I T+ G GY
Sbjct: 180 LNDEVSPESIELYIHRLRKKLQ---GSDVRITTLRGLGY 215


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+ +   + L L++E +++   D G   +E  +   FD +ILDL +  + G+
Sbjct: 1   MKILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR  +   P+ +L+      D+V G   GADDY+ KPF+  EL AR++A++RR  
Sbjct: 61  TVCKVLR-KETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLE 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    + LI     ++N   + V V    + LT KE+ ++ +L+   +   T++  LN +
Sbjct: 120 GEPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     + + +D  I +LR KL +  G  ++I+TV G GY
Sbjct: 180 WEYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGY 220


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F V     G + +E     + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREVR-KQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  GDLS++ +A  V+ +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----ENA 225
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR    ENA
Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYLRHPEQENA 236


>gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
          Length = 230

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD ++A   +  L+  +  V +   G++G+E      FD IILD+ L  + GFE+
Sbjct: 5   VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAALNEPFDLIILDVMLPTMDGFEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R +  
Sbjct: 65  CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   L+   +++V+  A  V V  + +  T KEY+++  L    N    KE     
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  D  EV  + V I ++R+KL  A    + IET+WG GY
Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   ++L L+ E ++V     GE+G+E  K   +D I+LDL +  + G EV
Sbjct: 9   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGEEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+    I +KV  L  GADDY++KPF  EEL ARIR  +R     
Sbjct: 69  CKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 127

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + +  +  D L +NL    +      I LT  EY +   L L K   +++E  LN ++  
Sbjct: 128 SNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E KI+DV+I  LRKK+        +I TV G GYVL++ +
Sbjct: 188 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKKES 229


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E F V     GE+G++L K ++   I+LDL +  + G ++
Sbjct: 6   ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKM 65

Query: 63  LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              +R VA++  P+ +L+  S   DK+ GL  GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  CMKVREVAEM--PIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLK 123

Query: 119 -SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            S  H+ +   +  GDL +N     V V   R+ LT +E+ ++ELL       ++ E   
Sbjct: 124 MSGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I K+R+++   +    YI+TVWG GY
Sbjct: 184 EKVWKEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGY 227


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A +I   L +E +   V   G   ++     + DA++LD+ L  I G EV
Sbjct: 4   ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++ A    PV +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 64  CRRIQ-ADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 122

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           AQ        S I  GD+ V+   + V      IHLT  E+ ++ +L+    T LT+E  
Sbjct: 123 AQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRERL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  I  LR+KL     G + I TV G GY      +D
Sbjct: 183 LAEVWDWVDASGTRTVDSHIKALRRKL-----GADLIRTVHGVGYAFEPPEED 230


>gi|158318678|ref|YP_001511186.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158114083|gb|ABW16280.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 219

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA +I   L+     V     G   +EL   + +D I+LD  L  + G 
Sbjct: 1   MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+  A   T V +L+    I D+V G   GADDY++KPF   ELVAR++A+ RR+R
Sbjct: 61  DVCRAVVAAGGDTRVIMLTAAGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + +++    V   G  + L+ KE+ ++E+L     + ++ E  L   +D
Sbjct: 121 AAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEVLMRADGSVVSAEELLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P    + + +  LR+KL    G    IETV G GY ++
Sbjct: 181 SNVDPFTNAVRMAVMTLRRKL----GPPPLIETVAGVGYRMK 218


>gi|300702737|ref|YP_003744337.1| transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
 gi|299070398|emb|CBJ41693.1| Transcriptional regulatory protein [Ralstonia solanacearum
           CFBP2957]
          Length = 243

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 18/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  +   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127

Query: 119 SRGHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +   A+ ++      V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 AMPAAEPVVPHDDVLVFGELAISPPNRTVIWRGQPVDLKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +E
Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  + L L  + F V++   G  G+   +     A +LD+ L  + G E+
Sbjct: 11  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A   TPV  L+      D++ GL+ GADDY++KPF+  ELVAR+RA++RR+ G 
Sbjct: 71  CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +   G ++++   +TV V G  I LT  E+ ++  L  R     T+   L  ++
Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +DV + ++R KL  AAG    I T  G GY
Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + L+ + F V   + G + +++ + +  DA ILD+ +  + GF
Sbjct: 8   VKVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L  LR   +  PV  L+   ++ED++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 68  ELLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 127

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   + S +   DL++N D   V   G  I L+  E+ ++  L L     L+K   L+
Sbjct: 128 VTADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILD 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 NVWHYDFGGDGNVVESYISYLRRKVD--TGDVPLIHTVRGVGYVLR 231


>gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 225

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 109/224 (48%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   +E  L      +     G D        E+D I+LD     + G 
Sbjct: 1   MRILLLEDDIEIGTWVEDGLSKAGHVIDWVKDGHDAFLNATTREYDVIVLDRMTPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ALR    S PV  L+ + S+ED+V GL +G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  SVLKALRSTNNSVPVLFLTALGSVEDRVEGLDAGGDDYLPKPFAFSELLARVSALGRRPS 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + G   S +      +NL  +     G  + L  KE+++ E     K   LTK M L  
Sbjct: 121 TNSGETTSCLEVEKFQLNLLKQQCTRAGQPVPLNAKEFRLFETFIRNKGRVLTKNMLLEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  I +LR K+         I T+ G GY+L
Sbjct: 181 VWDMNFDPTSSVVETHISRLRSKIEKPF-DIELIRTIRGAGYIL 223


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIED+  LA   +  L+   F V +   G+ G+ L + ++ D ++LDL L  + G +V
Sbjct: 4   VLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDGLDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R  +   P+ +++      D++ GL+ GADDYI KP++  ELVAR+RA++RR   S
Sbjct: 64  AREIR-RQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +Q ++  G+L V+LD  TV+     I LT  E+Q++  L  +     T+   L  + 
Sbjct: 123 SGGSQ-ILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQ 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E   + ID  I  LR K+       +Y+ETV+G GY  R+ 
Sbjct: 182 GVAYEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRFRKG 226


>gi|258513128|ref|YP_003189384.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|258542677|ref|YP_003188110.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633755|dbj|BAH99730.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635031|dbj|BAI01005.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636814|dbj|BAI02783.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638086|dbj|BAI04053.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639867|dbj|BAI05829.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641140|dbj|BAI07100.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642923|dbj|BAI08878.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644195|dbj|BAI10148.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645978|dbj|BAI11926.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647250|dbj|BAI13196.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649031|dbj|BAI14972.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650303|dbj|BAI16242.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652018|dbj|BAI17952.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653294|dbj|BAI19226.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655075|dbj|BAI21002.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
 gi|256656347|dbj|BAI22272.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 223

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +++  ++ +   V      ED        ++D ++LDLGL D  G 
Sbjct: 1   MRILIVEDEHDLGAAVQERVRQDGHAVDWFMTLEDARAAVATVDYDFMLLDLGLPDGNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR +R     T + I +    I D++ GL  GADDYI KP++  ELVARI A+ RR  
Sbjct: 61  DLLREIRRTSFDTAILITTAEDQISDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYV 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+    G++ ++ + ++V      + LT +E+ ++ELLS R     +++     LY
Sbjct: 121 APRRQACYQMGEIVIDRENRSVTRNEMELELTAREWAIMELLSRRPGRIYSRQQIDTALY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +     ++VFI +LRKK+ N       I+TV GRGY L + A
Sbjct: 181 ALDQDVGSNTVEVFISRLRKKVGNTV-----IKTVRGRGYCLADRA 221


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F       GE  +     +  D +ILDL L  + G++
Sbjct: 6   KILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREVRRNN-NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+++   G LS+NL   +V   G  + +  KE +++  L+   N   T+E  
Sbjct: 125 PKADTAADAKTVEYPG-LSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++      + + +DV I +LR+K+ +       I TVWG GY
Sbjct: 184 LDHIWGYEYLGDTRTVDVHIKRLREKIKDHEQWS--IATVWGIGY 226


>gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
 gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
          Length = 230

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DDK +A  +E+ +++E     +   GE+ +  L    +   +ILD+ +  + GF
Sbjct: 3   KILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++A+R    + P+ I+S  +   DK++GL +GADDY++KPFN  E++AR+R+++RRS 
Sbjct: 63  DVVKAVR-KDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSS 121

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +     +I  G L++N D+  V+   G  + LT  E+ ++ LL+   N   + +   
Sbjct: 122 NEVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++        K + V +  LR K+  A  G   I+TVWG GY
Sbjct: 182 ERVWQTESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGY 225


>gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 224

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|294789087|ref|ZP_06754326.1| QseB [Simonsiella muelleri ATCC 29453]
 gi|294482828|gb|EFG30516.1| QseB [Simonsiella muelleri ATCC 29453]
          Length = 221

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  +   +   L   +F       G+ G +      +DA++LDLGL D  G 
Sbjct: 1   MRILIIEDDPLIGDGLYHGLSKLSFTADWFQNGKLGADALNSASYDAVVLDLGLPDCDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R      PV IL+   ++ D++ GL SGADDY+ KPF  +E+ AR+ A++RRS+
Sbjct: 61  VILQTWRQTNHDIPVLILTARDALPDRLAGLNSGADDYLCKPFALDEVAARLVALIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + I  G L+++  AKT  ++G  + LT  EY ++E+L L+ N   ++    + LY 
Sbjct: 121 GRAAADIRCGALTLDTAAKTATLRGQSLPLTRHEYMLLEMLLLQPNFIHSRAQIEDKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E E   I+V +  LRKK+     GK++I      GY
Sbjct: 181 WEQEIESNAIEVHVYNLRKKI-----GKDFIRNHRNLGY 214


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +A  ++  L+ +   V     G++GIE  K    D I+LD+ + DI G+E
Sbjct: 3   KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMP-DLIVLDIMMPDIDGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I  P+  LS   S  D+++G   G DDY+ KPF+ +EL+ARI A +RR + 
Sbjct: 62  VCRKIRDTVIC-PIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++L+   +++++L ++ V V+G+ I LT KE+ ++ELLSL      +KE  
Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   I  +R K+ N      YI+TVWG GY
Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGY 225


>gi|325102980|ref|YP_004272634.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324971828|gb|ADY50812.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ L  +I+L L+ E F V     G+  +++ K  +F+ IILD+ + +I GF+
Sbjct: 6   RILLMEDEEHLLEAIKLNLEMEGFFVRAVTDGKKALKVFKEEKFNLIILDVMVPEIDGFQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V   +R+     P+  L+  ++ ED++ GL+ GADDY++KPFN EEL+ R+  +++RS +
Sbjct: 66  VAETIRLENSEVPIMFLTAKNTSEDRITGLKKGADDYLTKPFNLEELILRVNNLIKRSMK 125

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G     + +   GD ++  ++  ++ + G    LT KE  +++LL  RKN  +++E  L 
Sbjct: 126 GDDLKELNSYKIGDKTIYFNSYELKNEDGTITPLTKKETMLLKLLIERKNEAVSREQILE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++    P  + ID FI   RK          Y  ++ G GY
Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPIYFHSIRGVGY 228


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +++ +K+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVREVR-KDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A  ++  G L++N D+  V+ + G  + LT  E+ ++ LL+   N   + +  
Sbjct: 120 EKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F+V     G D + L +  + D ++LD+ L D+ GF V
Sbjct: 14  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A    PV  L+      DK+ GL  G DDY++KPF+ EE+VARIRA++RR+   
Sbjct: 74  TRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHAL 133

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++  GDL ++ D   V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 134 DEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVW--------GRGYVLR 222
           +     +  I++ +I  LR+K+  A       N I+  W        G GY+LR
Sbjct: 194 EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYMLR 247


>gi|226324237|ref|ZP_03799755.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758]
 gi|225206685|gb|EEG89039.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK + + I + LK E+++  +     +   L      D IILDLGL D  G E
Sbjct: 6   KILIVEDDKYIINFISMSLKKEDYDYVIAKTCGEANALFYANRPDMIILDLGLPDGDGIE 65

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++ +R ++KI  P+ ++S     E+K++ L  GADDY++KPF   EL+ARIR  +R+S 
Sbjct: 66  IIKNVREISKI--PIIVVSARQEEEEKIQALDLGADDYVTKPFYMGELLARIRVALRKSN 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +     L V+ +   V + G  +HLT  EY++++LL   +   LT    L 
Sbjct: 124 QIPEEKKEKIFQCDYLKVDWEKHQVSIDGKEVHLTPMEYKILKLLIDNRGKVLTHNYILG 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++      E   + VF+  LR+K+    G   +I T  G GY  RE A+
Sbjct: 184 QIWGSAQGVEAANLRVFMAALRRKIEKDPGNCRFILTEVGVGYRFRETAE 233


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL L  E + V V   G   +   +    D IILD  L  + G E+
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R LR +    P+ +L+    +   V GL +GADDY+ KPF+ EEL+AR+RA +RRS+  
Sbjct: 64  CRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSKET 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  +++  DLS+N     V      + LT KE+ +++ L       +T++  L  ++  
Sbjct: 124 DSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  +I+V+I  LR KL  A   K  ++TV G GYVLR+
Sbjct: 184 DFMGDSNVIEVYIRYLRLKL-EANNEKRLLQTVRGVGYVLRD 224


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 124/218 (56%), Gaps = 4/218 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++   + E +  +    G++ +E    + FD I+LD+ +    GF+
Sbjct: 3   KILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    +TPV +++      DK+ G   GADDYI+KPF+ +EL+ARI+A+++RS  
Sbjct: 63  TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV GDL VN+ + TV ++G+ + LT KE+ ++  L+   +  L++E  L  ++  
Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + + +D  I  LR++L +    +  I+TVWG GY
Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGY 216


>gi|251779485|ref|ZP_04822405.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083800|gb|EES49690.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K++ + I L L+ E +    +  GED I   +  + + +ILDL L DI G 
Sbjct: 1   MKILVVDDEKSIVNLIRLNLEVEGYEPITSMTGEDAIHKFETEKPELVILDLMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V++  +      PV +L+  S I DK+ GLQ GADDYI KPFN  EL+ RI+A+ +R  
Sbjct: 61  DVIKRFQKIDSEIPVIMLTAKSQINDKLLGLQLGADDYIIKPFNSTELILRIKAVTKRIT 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     + I    L +  D + V ++   I +T KE+  + L+    N   T+E  L 
Sbjct: 121 KKSCSKNNNEIKIEKLKILKDERKVFIEEKEIFMTYKEFDTLLLMMENHNKVFTRENLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D+ I ++RKK+   +   N ++TV+G GY L
Sbjct: 181 RVWGDEYDVNTRAVDILIQRVRKKMGKYS---NKLKTVYGVGYKL 222


>gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
 gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    + V     G DG  L    ++D ++LD+ L  + G+
Sbjct: 20  MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K  T V +L+    +E KVRGL+SGADDY+ KPF   EL+ARIR ++RR  
Sbjct: 80  EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 138

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  S +   DL ++         G RI LT KE+ ++ LL  R    LT+      ++
Sbjct: 139 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  ++DV I +LR K+    G +  I T+ G GYVL
Sbjct: 199 DINFDCDTNVVDVAIRRLRMKVDEPFGDR-LIHTIRGVGYVL 239


>gi|86141861|ref|ZP_01060385.1| two-component system response regulator [Leeuwenhoekiella
           blandensis MED217]
 gi|85831424|gb|EAQ49880.1| two-component system response regulator [Leeuwenhoekiella
           blandensis MED217]
          Length = 227

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 12/222 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           +LL ED+ AL   ++  L++  F V   DL EDG +  K +E   +DA++LD+ +    G
Sbjct: 7   LLLAEDEAALGQIVKESLETRKFTV---DLAEDGEKALKLFEQKSYDALVLDVMMPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F + + +R    S P+  L+  S   D V G   G +DY+ KPF+ EEL+ RI  +V R 
Sbjct: 64  FTLAKEIRAKDDSIPIIFLTAKSQTSDVVEGFSIGGNDYLKKPFSMEELIVRIHNLVARK 123

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  +QS +++ GD   N   +T++ Q    I LT +E  ++  L   KN  L + + LN 
Sbjct: 124 KLQSQSEVLSLGDYKFNFPKQTLQFQAEEAILLTHREAHLLFHLIKNKNQVLDRSLILNK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L++  D    + +DVFI KLRKKL+       +I+ +  RG+
Sbjct: 184 LWNSDDFFAARSMDVFISKLRKKLAK----DEHIQIINVRGF 221


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  ++L L+ E + V +   G +G+E         ++LD+ L  + G EV
Sbjct: 6   ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++   
Sbjct: 66  LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  L+ ++
Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  ++DV+I  +RKKL +    K  I T+ G GY ++
Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227


>gi|317501465|ref|ZP_07959663.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|316897094|gb|EFV19167.1| KDP operon transcriptional regulatory protein KdpE [Lachnospiraceae
           bacterium 8_1_57FAA]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+ ++   V   G+  +     +  D ++LDLGL D+ G EV
Sbjct: 6   ILVVEDDTSIRNLITTTLKTNDYRYVVAMNGKMALMEATSHRPDIVLLDLGLPDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+ARIR   RR    
Sbjct: 66  INNIR-SWSNMPIIVISARSEDNDKIEALDAGADDYLTKPFSVEELLARIRVTQRRISLM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S  V G L ++  A    +    +HLT  EY+++ LLS      LT    + 
Sbjct: 125 TAEMMTADSKFVNGKLKIDYSAGCAFLNDKELHLTPIEYKLLCLLSKNVGKVLTHTFIME 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    E ++  + VF+  LRKKL        YI+T  G GY
Sbjct: 185 NIWGRNWETDIASLRVFMATLRKKLEPTEDSPQYIQTHIGVGY 227


>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G + + + + +  DA++LD+ L D  G 
Sbjct: 24  VRVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVMLPDFSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+  R+RA++RR+ 
Sbjct: 84  EVLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAG 143

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G + S +V GDL+++ D++ V   G  + LT  E++++  L       L+K   L+ 
Sbjct: 144 GVTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDR 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I++++I  LRKK+   A  +  I T+ G GYVL+
Sbjct: 204 VWSYDFGGQANIVELYISYLRKKID--ADREPMIHTMRGAGYVLK 246


>gi|300362057|ref|ZP_07058234.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
 gi|300354676|gb|EFJ70547.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 119/203 (58%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +   +KS N++V     G D +EL K   +D IILD+ +  + G 
Sbjct: 1   MKILLAEDEEQLSRVLVAAMKSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + I+D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+  + + V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNVSEQEL-VSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             ++   +++ ++I  LR+KL +
Sbjct: 180 DENDANEEVVWIYISYLRQKLQS 202


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK +NF VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGDTQLIHTVRGVGYVLR 230


>gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 224

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E ++V     G++ +++      D ++LD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q+          I  GDL ++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLR 231


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGY 227


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E   V V + G  G+E       D ++LD+ L  + G E
Sbjct: 3   RILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARI A++RR   
Sbjct: 63  VCRELR-RESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  GD+ ++ D+  V V+G  + +  KE++++E+L       LT+   ++ +
Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I ++R K+         I T+ G GY
Sbjct: 182 WGADYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGY 222


>gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A   +  L++  ++V V   G+ G++     E+D +ILDL L  + GFE+
Sbjct: 4   ILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
            + +R  K + P+ ++S      DK+RGL  GADD+ISKPF+  ELVAR++A + R  R 
Sbjct: 64  CKQVRKVK-NIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARYDRL 122

Query: 122 HAQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + S  +T    + L        A+ V + G+ +  T KEY ++  L    N   +K   
Sbjct: 123 VSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSKTEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+ +      YIETVWG GY
Sbjct: 183 FEKIWGLDSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGY 227


>gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
 gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
           15053]
          Length = 236

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  + + I   L+S+N+    +  G   +        D I++DLGL D+ G +V
Sbjct: 9   VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAVMSAASGNPDIILMDLGLPDMDGVDV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R   ++ P+ ++S  S  +DKV  L +GADDY++KPF+ EEL+AR+R+ +RR +  
Sbjct: 69  IKKIRTWSVA-PIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRRIQYL 127

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q      S+   G L+++  A TV V    IHL   EY ++ LL+      LT +  L+
Sbjct: 128 TQKGEEEPSVFHNGSLTIDYGAGTVYVGEQEIHLMPLEYSLLCLLAQNVGKVLTYQFILD 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E ++  + V++  LRKK+   +     I+T  G GY
Sbjct: 188 KVWVNAIESDMSSLRVYMASLRKKIEKNSSQPQCIQTHIGIGY 230


>gi|222111264|ref|YP_002553528.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221730708|gb|ACM33528.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +  +++  L      V     G   +   + +  DA++LDL L  + G 
Sbjct: 1   MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   + TPV +L+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS 
Sbjct: 61  QVLQQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSG 120

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           G       A + +V G L    ++  + +    + LT +E  ++  L  +    + KE  
Sbjct: 121 GDTADDKQASNALVMGALRYEKESGAIYLHDAPMDLTPRELALLRTLLTQPGRAVAKERL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++ G+ E + + I+V + ++RKKL   AG    + T+ G GY+L+
Sbjct: 181 YELVFPGQSEVQYEAIEVVVYRVRKKL---AGTGVALMTLRGLGYLLK 225


>gi|121594013|ref|YP_985909.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606093|gb|ABM41833.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +  +++  L      V     G   +   + +  DA++LDL L  + G 
Sbjct: 16  MQLLLVEDDATMQATLQRSLARRGMAVTALADGRAALAEWRAHPPDAVVLDLTLPGLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   + TPV +L+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS 
Sbjct: 76  QVLQQARAGGLRTPVLLLTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSG 135

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           G       A + +V G L    ++  + +    + LT +E  ++  L  +    + KE  
Sbjct: 136 GDAADDKQASNALVMGALRYEKESGAIYLHDAPMDLTPRELALLRTLLAQPGRAVAKERL 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++ G+ E + + I+V + ++RKKL   AG    + T+ G GY+L+ 
Sbjct: 196 YELVFPGQSEVQYEAIEVVVYRVRKKL---AGTGVALMTLRGLGYLLKP 241


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58
           RILL++D+  LA S+   L+ E + V V   G    EL +      ++ ++LD  L ++ 
Sbjct: 3   RILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELS 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR
Sbjct: 63  GLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122

Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + G  + +  +  GDL ++ + +    QG  IHL+ KE++++E         LT +    
Sbjct: 123 TTGTGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ G D P   ++   +  L ++     G    I  V+G+GY     A D
Sbjct: 183 QVWAGEDPPSSNVLAAQVRLL-RRRLRLPGAAELIHAVYGKGYRFGPVAGD 232


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +  +L+ E F+V V   G   I+  + Y  D I+LDL L  I G E
Sbjct: 3   KILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDGLE 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   PV +++  S   DK+ GL+ GADDY++KPF+  ELVAR++A +RR 
Sbjct: 63  VCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRRR 122

Query: 120 RG---HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            G   HA    +  I  G L V      V + G ++ LT KEY+++ LL        +++
Sbjct: 123 TGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSRD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L+ ++      + + +DV I  LR+K+        +IETV G GY  +E A
Sbjct: 183 FLLSTIWGFDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRFKELA 235


>gi|134093799|ref|YP_001098874.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
          Length = 207

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 113/198 (57%), Gaps = 2/198 (1%)

Query: 25  FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           F V +   G DG  +    ++D ++LD+ L D+ G+ ++++LR A    PV  L+    +
Sbjct: 5   FMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGWRIVKSLREAGKQMPVLFLTARGGV 64

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLDAKTVEV 143
           +D+V+GL+ GADDY+ KPF   EL+AR+R ++RR    +QS  +   DL ++L  +    
Sbjct: 65  DDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGSAPSQSERLEVADLILDLPRRKATR 124

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
            G +I LT KE+ ++ELL+ R+   L + +  + ++D   + +   IDV I +LR K+ +
Sbjct: 125 MGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVWDMNFDSDSNAIDVAIRRLRAKIDD 184

Query: 204 AAGGKNYIETVWGRGYVL 221
               K  I TV G GY L
Sbjct: 185 PFEPK-LIHTVRGMGYTL 201


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 121 GHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              Q+ I        V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +A     YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233


>gi|327192961|gb|EGE59877.1| two component transcriptional regulator, winged helix family
           [Rhizobium etli CNPAF512]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+K LA ++   L         T    D +EL +   +DAI+LD  L D  G 
Sbjct: 1   MRILLIEDEKELAEALSAALGKHGIVTDHTAHLADAVELTRQNLYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR     TP+ +L+  +  +++V GL  GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  RFIPELRRTGRDTPIIVLTARNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y+
Sbjct: 121 NLAELKITAGRMVIDPLHLSVTVDDAPLDLPRRELLVLAALAKRKEKTVLRATLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   +D  I +LR++L+  AG +  I  + G GY+LRE
Sbjct: 181 YEEEIQSNALDAHISRLRRRLAE-AGAEVSIHNIRGVGYLLRE 222


>gi|218508571|ref|ZP_03506449.1| probable two-component response regulator protein [Rhizobium etli
           Brasil 5]
          Length = 216

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 110/202 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGAPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L+++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVGFGGISFDLNSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             D+     I+ ++ +LRK+LS
Sbjct: 181 FDDDISANAIEQYVSRLRKRLS 202


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD+ +     L LK  ++ V+    G +GI + +      ++LD+ L  + G+E
Sbjct: 4   KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+     P+  LS    I DKV+GL +GADDY++KPF+  EL ARI+A +RRS  
Sbjct: 64  ICQKIRMLS-EAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R   + +   G+L ++LD+  V  +G+++ L  KE Q++ LL   KN   + E   +
Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++K + V I  LR+K+         I+TV G GY
Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGY 225


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +++E +       G + + +L    +   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  IEVIKEVR-KDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             H  +    ++  G L++N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGY 224


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK++ +NV     G++ ++     + D  ILD+ L D+ GF
Sbjct: 32  MNILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGF 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 92  QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEM 173
            + +     GD+ ++     +  Q H        + LT  E+ ++ LL   +   ++ E 
Sbjct: 151 QYNEGTKDEGDV-IDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEE 209

Query: 174 FLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++     +     + V I  LR+K++   G  ++I+TVWG GY + E
Sbjct: 210 LFHKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V   G  + LT  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|148555862|ref|YP_001263444.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501052|gb|ABQ69306.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 226

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LL+EDD AL   +E  L+    +V V   G   +E      FDA+ILDL L  + G 
Sbjct: 3   LNLLLVEDDAALVAMLERDLREMGHHVSVAMDGRSAVEAVTRDRFDAMILDLMLPTVDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   +  PV ILS +    +KV GL +GADDY+ KP    EL AR+ AI+R  R
Sbjct: 63  SVLQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRR 122

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             AQ    +  GD+ V+         G  + L+  E+ ++  L    ++ +T+ M L  +
Sbjct: 123 QPAQDGDTLRAGDIVVSPARFRAWRDGKAVDLSKIEFNLLLELVRNVDSIVTRAMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    EP   ++DV I +LR KL+ A GG + I TV G GY+L
Sbjct: 183 WGYDFEPATNLVDVHIRRLRAKLT-ANGGGDPISTVRGVGYLL 224


>gi|32487234|emb|CAD91201.1| putative response regulator [Nonomuraea sp. ATCC 39727]
          Length = 217

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   LA S+  +L+ E   V V+  G+D  E     ++D ++LD  +  + G 
Sbjct: 1   MRVLVVEDQVDLADSVARVLRREGMAVDVSHDGDDAQERLSVIDYDVVVLDRDIPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   + V    T V +L+   +  D+V GL  GADDY+ KPF   ELVARIRA+ RR+ 
Sbjct: 61  ELCAEIAVDDRRTRVLMLTASGTTADRVAGLSLGADDYLPKPFAFAELVARIRALGRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++V GDL ++   +     G R+ LT KE  ++E L   +   ++ E  L  ++D
Sbjct: 121 PPAPPILVHGDLRLDPAQRVAIRGGMRLPLTTKELAVLEHLLTARGRVVSAEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +P    +   I +LR KL    G    IETV   GY
Sbjct: 181 EQADPFTTTVKATINRLRSKL----GQPPVIETVPREGY 215


>gi|311109658|ref|YP_003982511.1| transcriptional regulator TctD 4 [Achromobacter xylosoxidans A8]
 gi|310764347|gb|ADP19796.1| transcriptional regulatory protein TctD 4 [Achromobacter
           xylosoxidans A8]
          Length = 225

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDA+ILDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLVAERRLAMEEFDAVILDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ +K+  L  GADD++ KPF  EEL AR+ A++R
Sbjct: 59  DGHALLAKIRARDDRTPVLVLTARDSLAEKIGTLHQGADDFLPKPFVVEELEARLIALIR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G+L     A+   V G  + L+ +E+ ++ +L  +    + K+  L+ 
Sbjct: 119 RSRGREHPRLTLGNLVFETSAQKFTVNGQPLQLSPREHSVLRVLIQKSGEPINKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     +  ++ I+V + +LRKKL++       I T+ G GY L EN  D
Sbjct: 179 ILTDDADINLEAIEVVVHRLRKKLADTG---VQIVTMRGMGYCL-ENLVD 224


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   +++ LK + F+V V   G   ++  + +  D ++LD+ +  + G  
Sbjct: 11  RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   I  P   L+   S+EDKV GL  G DDY++KPF+ EE+VARI  ++RRS G
Sbjct: 71  LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRS-G 129

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q   +T     DL ++ +   V   G  + L+  E+ ++    +     L+K   L+H
Sbjct: 130 FGQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDH 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V +++ ++  LR+K+    G    I T+ G GYVLRE
Sbjct: 190 VWHYDFGGDVNVVESYVSYLRRKVDT--GEPRLIHTLRGVGYVLRE 233


>gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
 gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+ ++   +   L+++ +      L +D  +  + +  D I+LD+ L D  GF
Sbjct: 3   FKVLIVEDEVSINDILVSALRADGYTAKGVFLAKDAQDALEIFHPDLILLDINLPDENGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPFN +E++ R++  +RR  
Sbjct: 63  ELCRYIN-NKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIRRVN 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   + + +   + VNL+ + V      + L  +EY+++E     +N   ++E+ L
Sbjct: 122 KYKEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSREIIL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E EV+ +DV + +LR KL +     + I+TV+G GYV+R
Sbjct: 182 NKVWGFDYEGEVRTVDVHVRRLRSKL-DKENATSIIDTVFGIGYVMR 227


>gi|70728820|ref|YP_258569.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5]
 gi|68343119|gb|AAY90725.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA SI   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESIAQALKSTGLTVDVLHDGVAADLALGSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE   + ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLASQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHAVAIVTFRGLGYLL 218


>gi|146339743|ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|148254517|ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146192549|emb|CAL76554.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS278]
 gi|146406690|gb|ABQ35196.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V DL   GE+G+ + +  ++D +++D  L   
Sbjct: 9   MRLLIIEDDR---ESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKR 65

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++ ALR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 66  DGLSLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 125

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++    GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 126 RHGGPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 186 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-DRPLLHTIRGAGYMIRDGLR 234


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 239


>gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 224

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+     I  +L+   + V   +      +L +  +FD ++ D+ +  + G+
Sbjct: 2   VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR    S P+  ++    I  K +G  SG DDY+ KP N  EL+ RI+A++RR++
Sbjct: 62  QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L++ G+L++N +A T +V    + +T +E+Q++  L    +   ++   +N  +D
Sbjct: 122 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +  ++ +DV+I KLR+K   A G    I+T+ G GY
Sbjct: 182 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 218


>gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +
Sbjct: 3   KALLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R LR A  S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR ++
Sbjct: 63  VCRDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNK 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           G  Q+  +  G LS++   ++V   G  + LT  E++M+  L+ +    LT++  LN + 
Sbjct: 122 GQEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVR 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++G D    + +DV + KLR+KL +       I+T+WG+GY+    A
Sbjct: 182 GIEFNGLD----RSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLFSPKA 227


>gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 220

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|160947486|ref|ZP_02094653.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270]
 gi|158446620|gb|EDP23615.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270]
          Length = 216

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 120/214 (56%), Gaps = 3/214 (1%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +A ++  +LK E ++V   + G+  +   +   +D  +LD+ + ++ GFEV R  R   I
Sbjct: 1   MARALVELLKQEKYDVDHMEDGDSALMALESGIYDIAVLDVMMPEMNGFEVARRARKNGI 60

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
            TP+ +L+  S ++DKV GL SGADDY++KPF  +EL+ARIRA+ RRS    + ++  GD
Sbjct: 61  KTPILMLTAKSQLDDKVEGLDSGADDYLTKPFQTKELLARIRALGRRSSSFQEDILNYGD 120

Query: 132 LSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           L+++     +  +  G  + L+ KE +++E +       +T+E     ++    E E   
Sbjct: 121 LTIDKTTAMLNCDTTGQNVRLSEKELRILEYMFNNNGQIMTREQLAVKIWGFESETEYNN 180

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++V++   RKKL+   G    I+ V G GY LRE
Sbjct: 181 VEVYMSFTRKKLT-FVGSNVEIKAVRGLGYELRE 213


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 17/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ + + +   LK++ F V+    GE  + L +  + D I+LDL L  + G E+
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMDGLEI 64

Query: 63  LRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R  R+ +   P V +L+  +   DKV GL  GADDY++KPF+  ELVAR++AI+RR R 
Sbjct: 65  CR--RLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122

Query: 121 ----GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 A+S ++T  DL +++  + V+ +G  + LT +E+ ++  L+       T+E  L
Sbjct: 123 TSVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLL 182

Query: 176 ----NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                H +DG D    +++DV I  LR+KL +       I+TV G GY
Sbjct: 183 ERVWGHDFDGVD----RVVDVHISLLRRKLEDDPTEPTLIQTVRGVGY 226


>gi|320325554|gb|EFW81616.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327160|gb|EFW83174.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330879271|gb|EGH13420.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGEWQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ +  +A +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 119/232 (51%), Gaps = 17/232 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A SI     +E + V +   G  G+E  K Y  D I+LD+ L  I G E
Sbjct: 11  RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70

Query: 62  VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           V R ++     + P+ +L+      D + GL  GADDY++KPF+  EL+AR++A++RR  
Sbjct: 71  VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                    +   A+  +  GDL ++   + V   G   HLT  E+ ++  L+    T L
Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T+E  L  ++D  D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 191 TREQLLEEVWDWVDASGTRTVDSHVKALRRKL-----GADLIRTVHGVGYSL 237


>gi|163736175|ref|ZP_02143594.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
 gi|161390045|gb|EDQ14395.1| two-component response regulator [Phaeobacter gallaeciensis BS107]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD  +       L +    V   + G + +      ++D ++ D    D+ G   L+
Sbjct: 1   MLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPDLDGLSALK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF   EL+ARI A+ RR R  A 
Sbjct: 61  TLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEAA 120

Query: 124 --QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +    L ++L ++T    G  + L  KE++++E+L   K    T+ M L  ++D 
Sbjct: 121 ETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDI 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +++  + +LR K+     G  +I+TV G GY+ 
Sbjct: 181 NFDPSTSVVETHMSRLRNKIEKPF-GLEFIKTVRGSGYMF 219


>gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++++
Sbjct: 181 EIYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224


>gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 221

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E F V  +   +    L K  E D IILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFEVINSYTAKGA--LSKLNEADLIILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RRS+  
Sbjct: 62  LK--EASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRSKNF 119

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ ++ G + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E + +DV I +LR+KL +    K  I+TVWG GY L E+
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSED 219


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D +ILD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +A  ++   + E + V     G++ + + K    D I+LD+ L    G +
Sbjct: 3   KLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+R 
Sbjct: 63  VCRTVR-QTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q ++   +L ++L++ TVE  G  + LT +E++++  L+  +   LT+E  L 
Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      YI T  G GY LR
Sbjct: 182 SVWGFDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTLR 227


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  +   L+ E + V     GE+ + L    + D ++LD  L  + G EV
Sbjct: 7   ILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLSGIEV 66

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   A    P+ +L+      DK+RGL +GADDY++KPF+  EL+ARIRA++RR +
Sbjct: 67  CRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRVQ 126

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  GD++++L A  V      +HL   E+++++          ++E  LN ++
Sbjct: 127 PVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELLNAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L N     + I TV   GY L
Sbjct: 187 GPDIYVEPRTVDVHIRRLRKAL-NGDNDADIIRTVRAAGYAL 227


>gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   +++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKIDLPYPVK-LIHTVRGIGYV 218


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--KWSEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  + LT +E+ + +L          ++  L
Sbjct: 120 KKKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL ++     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 222


>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
 gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
 gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
          Length = 239

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q+      LI    L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523]
          Length = 228

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D I+LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIIVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 20/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +RIL++ED+  +   ++L L+ E    YV D    GIE  +  E   +  ++LD+ + ++
Sbjct: 4   IRILIVEDEAPMRELLQLYLRKEG---YVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60

Query: 58  PGFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            GFEV R +R  K+S  PV +L+  +   DKV+GL+ GADDY++KPF +EEL+AR+ A++
Sbjct: 61  DGFEVCREIR--KVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVL 118

Query: 117 RR-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR       SRG+  +L   G L +  +A  V      + LT KE+ ++EL  L KN   
Sbjct: 119 RRYGVSEPESRGN--TLFFKG-LVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVF 175

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
           +++  L  ++      + + +D  +  LR KL+ A   G++ I+TVWG GY L
Sbjct: 176 SRDDILELVWGYDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  +   +KS  +       G +     + +  D ++LD  L D+ G  +
Sbjct: 8   ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  +   + PV +L+  +  EDKV GL  GADDYI+KPF+ +ELVARI A++RR +
Sbjct: 68  LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKA 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+SL+  G ++++ ++  V++    I +   E+++++ L    +   ++   L+ ++
Sbjct: 128 PERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + + E + +DV I +LRK L    G +N I TV G GY+L E  K E
Sbjct: 188 SNQLDIEERTVDVHILRLRKALK---GQENLIRTVRGMGYMLSEKDKSE 233


>gi|167033576|ref|YP_001668807.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166860064|gb|ABY98471.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 230

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 21/232 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   + L L  E F     D GE+G        +  ++LD+ L  I G EV
Sbjct: 4   VLLVDDDRELTEMLSLYLAREGFQATAVDTGEEGEAQALSGNYQVVVLDVMLPGISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR    
Sbjct: 64  LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPQ 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
                 A   + TG L +    +        + LTG E+ ++E L+ +    ++K+ + L
Sbjct: 123 QMGEASAPEQLRTGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLVSKQDLSL 182

Query: 176 NHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L      YD R       IDV +  +R+KL   A G ++I++V G GY+L
Sbjct: 183 NALGRPLTRYDRR-------IDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 227


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +     ++D +ILD+ L  + G 
Sbjct: 1   MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR R
Sbjct: 61  TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q+     LI T   S+N   + V + G  + +LT KE+ ++  L        ++E  
Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKLS+    K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSDE--KPFLYTVWGVGYKFDED 227


>gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
 gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
          Length = 232

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  I G 
Sbjct: 7   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGISGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V    DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+ +       ++TV G GY L
Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 228


>gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 239

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L +  ++D +++D  L    G 
Sbjct: 14  MRLLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKRDGL 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    +TP  ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 74  SVIGTLREKGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G + ++    GDL ++  +  V      I L  +E++++E L       +T+ M L +++
Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 194 DYHFDPQTNVIDVHISRLRSKIDKGQ-ERPLLHTIRGAGYMIRDGLR 239


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   L+ E + V     G+  +E     + D I+LD+ L  + G E
Sbjct: 5   KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGVDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  K +   P+ +L+      DKV GL+ GADDY++KPF+  ELVARI+A +RR+
Sbjct: 65  VCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRRN 124

Query: 120 RGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               QS       ++  G L ++++  +V + G ++  T KE+++++LL+       T+E
Sbjct: 125 FKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      + + +DV I  +RKK+    G K ++ETV G GY  RE A
Sbjct: 185 YLLEKIWGYDFAGDTRTVDVHIRHIRKKIEPEQGEK-FVETVRGVGYKFREMA 236


>gi|294638408|ref|ZP_06716644.1| transcriptional activator protein Irlr [Edwardsiella tarda ATCC
           23685]
 gi|291088473|gb|EFE21034.1| transcriptional activator protein Irlr [Edwardsiella tarda ATCC
           23685]
          Length = 187

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 104/181 (57%), Gaps = 1/181 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +TD G  G  L     +D IILD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGKYLSKGLTEAGFVVDLTDNGLTGYHLAMTAGYDLIILDILLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR A    P+ +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DVVRMLRNANQGVPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  +      DL+++L ++ V   G R+ LTGKE+ ++E     +   L + +  + ++
Sbjct: 121 SHIPERQFQVADLTLDLLSRKVTRSGKRLTLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 D 180
           D
Sbjct: 181 D 181


>gi|300775304|ref|ZP_07085166.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506044|gb|EFK37180.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L  +++  L++E+F V   +    G+E    YE+D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEPELKDTVQNFLEAEHFIVEYAENYSAGLEKIISYEYDCILLDIMLPDGNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ ++      PV ILS   S++DKV GL+ GADDY++KPF+  EL+ARI++++RR  
Sbjct: 61  DLLKEIKKMHKKDPVIILSAKDSVDDKVAGLEIGADDYLAKPFHLAELLARIKSVIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
              +++I   ++S++ +++ V+V    + L  KEY ++    +    TL K      ++ 
Sbjct: 121 QDGENIIRYKNISIDPESRIVKVGNGELILNRKEYDLLYYFVIHPEKTLQKTTLAEAIWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D+ + +  I   I  LRKKL       ++ + V+G GY L
Sbjct: 181 DYIDQADSLDFIYSQIKNLRKKLKTLHAEADF-QAVYGIGYKL 222


>gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 249

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD+ LA  +        + +       +G+   +   FDA ILD+ L ++ GF 
Sbjct: 20  RILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGFA 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  +   P+ +L+    + D+V GL+ GADDY+ KPF   ELVAR++ I+RR R 
Sbjct: 80  LCREIR-KESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRS 138

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+     V   LS++LD + V   G R+ LTG E++++ LL+       +++  
Sbjct: 139 TPAAANGNGTQHRVFDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEPGKVFSRDDI 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN L     E   + +D+ + +LRKKL       + I+T+   GY L
Sbjct: 199 LNRLRGHEAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNAGYAL 241


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   + L L+ E F     D GE G+      + D I+LD+ +  + G+  
Sbjct: 4   ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDGYRF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  +   P+  L+  S   D+V GLQ GADDYI KPF+  E+VAR+ A++RR++G 
Sbjct: 64  CMHVR-ERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G + ++  A+ V+V G  + LT KE++++ L    +    T+E  L+ ++  
Sbjct: 123 DVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGI 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + +D  I  LR KL  A     YI+TVWG GY   E 
Sbjct: 183 HYVGSTRTVDTHIKTLRIKLGEAG---QYIQTVWGVGYKFDET 222


>gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ]
 gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ]
          Length = 232

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L +  + V     G +G+ L      D ++LDLGL D+ G E+
Sbjct: 8   ILVIDDEAQIRKFLRISLVAHGYRVLEAGCGREGLTLAAEARPDLLVLDLGLPDMDGKEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           L  LR      PV +LS  +   +KV  L  GA+DY++KPF+  EL+AR+R ++RR  S 
Sbjct: 68  LAELR-RDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASP 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L+V+LD + V++ G  I LT KEY ++ +L+      +T++  L  ++ 
Sbjct: 127 GQGPGTLNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   + V +  LR+KL +      +I T  G GY LRE A 
Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPRFIVTEAGIGYRLREQAP 232


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++ +    D I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222
                +  I++ +I  LRKK+      N  G        IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 239


>gi|296531946|ref|ZP_06894739.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296267727|gb|EFH13559.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+ ++  V       +   L     +  ++LDL L    G + 
Sbjct: 11  ILVVDDDREIRDLLSKFLERQSCRVTAARDAREARRLWPLGRYHLVVLDLMLPGESGLDF 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++   P+ +L+ MS   D++ GL+ GADDY++KPFN  EL+ARIRA++RR+ G 
Sbjct: 71  ARWLR-SQSDVPIVMLTAMSEETDRIVGLELGADDYVAKPFNPRELLARIRAVLRRAHGE 129

Query: 123 --------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A+S+   G +      + + + G  + LTG EY+++ +L  R N  LT++M 
Sbjct: 130 GTTSQEPPAKSIRFAGWVLEPARRRLMNLDGVEVPLTGGEYELLMVLVERPNRVLTRDML 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ L   +  P  + IDV + +LR+KL +       I+TV G GYVL
Sbjct: 190 MDLLRGRQAGPFDRAIDVAVSRLRRKLEDDGRNPTLIKTVRGGGYVL 236


>gi|190893427|ref|YP_001979969.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190698706|gb|ACE92791.1| probable two-component response regulator protein [Rhizobium etli
           CIAT 652]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L ++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVGFGGISFDLTSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218


>gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N++V     GE GIE+     +D ++LDL L    G E
Sbjct: 3   KILIIEDDKNIQRLLGLELRHKNYSVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V R LR      P+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR + R +  
Sbjct: 63  VCRELRKLG-DAPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVVTRNKEN 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +   +  ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 122 SNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMKNKGLSCSREKIIVGVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +   NYI T+ G GY+ +
Sbjct: 182 YDFDGEEKIVDVYINSLRKKIDPKS---NYIHTIRGFGYIFQ 220


>gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 301]
 gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 2457T]
 gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family
           precursor [Shigella flexneri 2002017]
 gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str.
           2457T]
 gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6]
 gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272]
 gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304]
 gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218


>gi|84515095|ref|ZP_01002458.1| Two component Transcriptional regulator, Winged helix family
           [Loktanella vestfoldensis SKA53]
 gi|84511254|gb|EAQ07708.1| Two component Transcriptional regulator, Winged helix family
           [Loktanella vestfoldensis SKA53]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +  ++E  L+     V     G+D + +      DA+ILDL L    G 
Sbjct: 1   MKVLLVEDNHDIGEAVERRLRMAGHVVTWNRTGDDVVAMLDHDPVDAVILDLMLPAADGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R  +   PV +++  + I+DKV  L  GADDY+ KPF+  E+ AR+RA+VRR  
Sbjct: 61  AILRQIRRQQRDLPVLVITARAEIDDKVSLLDLGADDYLVKPFDMREMEARLRALVRRPV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF---LNH 177
           G   S++  GDL ++  ++ V   G  I L  +E+ ++E L  +    +T+E     L+H
Sbjct: 121 GQFTSVLQLGDLELDPASRIVRQAGQLIDLGRREFGLLEALMTQAGRVVTRERLMSRLSH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L DG  E     +++ + +LR+K+   A     + T+ G GY+ R  A  +T
Sbjct: 181 LDDGGSE---NALELLVSRLRRKI---AASNVEVVTMRGVGYMARVVADAQT 226


>gi|119776564|ref|YP_929304.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119769064|gb|ABM01635.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD  L+  ++ +L+ E F + +   G +G+       FD I+LD+ L  + GFEV
Sbjct: 4   LLLVDDDPGLSELLKELLELEGFVLTLAHDGAEGLSKAVSSHFDLILLDVMLPKLNGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L+ LR  K  TPV +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR++ G
Sbjct: 64  LKQLRNHK-QTPVLMLTARGDDIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQPG 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             QS     I  GDL ++   +        I+LTG E+ ++  L+ +    ++KE     
Sbjct: 123 TPQSQPPEEIQLGDLKLDPSRQEAWCAQSLINLTGTEFALLLQLASQAGELVSKETLSET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   R  P  + +D+ +  LRKKL   + G+  ++T+ G+GY+
Sbjct: 183 VLGKRLMPFDRSLDMHLSNLRKKLPERSDGRPRVKTIRGKGYI 225


>gi|257865655|ref|ZP_05645308.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257871990|ref|ZP_05651643.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257799589|gb|EEV28641.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257806154|gb|EEV34976.1| response regulator [Enterococcus casseliflavus EC10]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            LLIEDD  +   +E++L+ E++N      G + + L +    D I+LDLGL DI G E+
Sbjct: 5   FLLIEDDSNIVDFMEVVLQREHYNFTSVGTGMETLMLLQEETIDFILLDLGLPDIDGMEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  +++TP+ ++S     +DKV+ L  GADDY++KPF+  EL ARIR  +R     
Sbjct: 65  LKIIR-KRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKETA 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A S   ++V  +L+++ + K +    + IHLT  EY+++ ++       +T +   + ++
Sbjct: 124 AFSSSPILVNKELTIDFEKKILYKNQNEIHLTKNEYRIMAVMFKNLGKVVTYDTLTSEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            G    + + + V I  +RKK+        Y+ T  G GY LRE
Sbjct: 184 -GPFAADAQTLRVNISNIRKKIETNTLQPEYLITEIGVGYRLRE 226


>gi|284037378|ref|YP_003387308.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816671|gb|ADB38509.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 244

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  +A  I   L      +  T+LG +G+EL     FD  ILDL L D  GFE
Sbjct: 3   RLLLIEDDPDVARLIHDHLHQLPGELTTTELGNEGLELLAMQPFDICILDLLLPDASGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    + P+ ILSG +   DKV GL++GADDY++KPF+  EL+AR+RA++RRS  
Sbjct: 63  ICRRIRQRHPAVPLLILSGRAEERDKVTGLEAGADDYLTKPFSVPELLARLRALLRRSEL 122

Query: 121 ----GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  QS I+    G L + + A+ V V G RI LT KE+ ++ LL+     + +++ 
Sbjct: 123 TGVSKPIQSTILVYQHGALRIEVQARIVTVSGQRIELTPKEFDLLTLLASYPGKSFSRQK 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++    +     +   I +LR K+        YI T WG GY
Sbjct: 183 ILSLVWGYHHDGYEHTVTAHINRLRIKIEPDFTRPIYILTTWGIGY 228


>gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
 gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPRMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218


>gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+     +  +N+        ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|325272287|ref|ZP_08138697.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102580|gb|EGC00017.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD      I   L S    V   D G +G+       +D I LD  L ++ G  
Sbjct: 3   RVLTIEDDAVTGQEIVAELTSHGLEVEWADNGREGLAKAIAGGYDLITLDRMLPEVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++  LR  KI+TP+ ++S +S ++++VRGL++G D  ++KPF  +E+ AR+  ++RR S 
Sbjct: 63  IVTTLRNLKIATPILMISALSDVDERVRGLRAGGDASLTKPFASDEMAARVEVLLRRNSV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L +       + ++L   EY+++E L       +T+ M    ++ 
Sbjct: 123 PMTQTRLQVADLQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   +IDV I +LRKK+ ++ G    I TV G GY + E
Sbjct: 183 YHFDPGTNLIDVHIGRLRKKI-DSPGQSPLIRTVRGSGYAIAE 224


>gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L +E  +V V   G + + L     FD ++LD+ L  + G+ 
Sbjct: 4   RVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++TPV +LS      D+  GL  GAD Y+ KPF+   LVA++RA++RR   
Sbjct: 64  VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G+L ++  ++ V   G  + L+ +EY ++  L+ R    ++KE  L  ++ G
Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVW-G 182

Query: 182 RDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D+   + +++V++  LR+KL+ AAG  + ++TV G GY
Sbjct: 183 EDQFVTRNVVEVYVGYLRRKLA-AAGAGHLVQTVRGHGY 220


>gi|260587288|ref|ZP_05853201.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|331083607|ref|ZP_08332718.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542483|gb|EEX23052.1| KDP operon transcriptional regulatory protein KdpE [Blautia
           hansenii DSM 20583]
 gi|330403818|gb|EGG83370.1| hypothetical protein HMPREF0992_01642 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 231

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD A+ + I   L++  +       GE  I     +  D I+LDLGL D+ G EV
Sbjct: 6   IMVVEDDAAVRNLITTTLETHEYRFQEAATGETAILEVATHNPDVILLDLGLPDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R     TP+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IQKIRTWA-KTPIIVISARSEDIDKIEALDAGADDYLTKPFSVEELLARLRVTFRRLNDM 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S+   GDL ++  A    ++   +HLT  EY+++ LLS      LT       
Sbjct: 125 KSDMVQSSVFQNGDLKIDYAAGCAFMKNTELHLTPIEYKLLCLLSQNVGKVLTHTYITKE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 IWGSAWDNDVASLRVFMATLRKKIEENPSEPKYIQTHVGVGY 226


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL    + D ++LD+ +  + GF V
Sbjct: 15  LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R LR A+ + P+  LS + +I +KV GL  GADDY+SKPF+ +EL ARI  I+ R   R
Sbjct: 75  CRRLR-AESAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVGR 133

Query: 121 GHAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           G A            ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 134 GTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVVP 193

Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 194 RAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++   + + L+ E + V     G  G+        D ++LD+ L ++ GFEV
Sbjct: 8   ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR     TPV +LS      DK+ GL  GADDY+ KPF  +EL+ARI+A++RR   S
Sbjct: 68  LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G      VT GD+SV++ A+TV      + LT +E++++         T T+E  L+  
Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E   + +D F+ +LR K         +  TV G GY
Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGY 228


>gi|325264454|ref|ZP_08131184.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324030116|gb|EGB91401.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 115/209 (55%), Gaps = 2/209 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L  ED+ +++ ++  +L    + V     GE  +E  +  ++D IILD+ +  + G 
Sbjct: 4   MKLLFAEDEISMSEAVVDILTYHKYIVDAVYDGEAALEYARSAQYDGIILDIMMPKMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR     TP+ +L+  + +ED+++GL  GADDY+ KPF   EL+ARIRA++RR  
Sbjct: 64  EVLGCLRREGYRTPILLLTAKAEVEDRIQGLDLGADDYLPKPFAMGELLARIRAMLRRRE 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G++ +N  +  +   G    L   EY+++E L L +   L+ E  L  ++ 
Sbjct: 124 EFTPDIITCGNIYLNQKSYELSGNGQTFVLAKLEYRLMETLLLNQGMYLSSEELLVKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN 209
              E E+  + V+I  LRK+L  AA G N
Sbjct: 184 YETEAELGTVWVYISYLRKRL--AALGAN 210


>gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A ++   L+ +   V       D     +    DA++LD+GL D  G +
Sbjct: 6   RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR A  + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR RA++RR++ 
Sbjct: 66  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQR 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A +       S++   + V +QG  + LT +EYQ++  L  R    L++E  L+
Sbjct: 126 LQPAPTASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D  +  LR KL   A  +++I T  G GY L
Sbjct: 186 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230


>gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS    +  I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224


>gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    + V     G DG  L    ++D ++LD+ L  + G+
Sbjct: 1   MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K  T V +L+    +E KVRGL+SGADDY+ KPF   EL+ARIR ++RR  
Sbjct: 61  EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  S +   DL ++         G RI LT KE+ ++ LL  R    LT+      ++
Sbjct: 120 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  ++DV I +LR K+    G +  I T+ G GYVL
Sbjct: 180 DINFDCDTNVVDVAIRRLRMKVDEPFGDR-LIHTIRGVGYVL 220


>gi|329116733|ref|ZP_08245450.1| putative response regulator ArlR [Streptococcus parauberis NCFD
           2020]
 gi|326907138|gb|EGE54052.1| putative response regulator ArlR [Streptococcus parauberis NCFD
           2020]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD +L++SI   L      + V D G++G+   +   +D I+LDL L +  GF
Sbjct: 2   IKILLVEDDLSLSNSIFDFLDDFADVLQVFD-GDEGLYEAESGVYDLILLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   I T V I++   S++DK  G + GADDY++KPF  EEL  RI+A+++RS 
Sbjct: 61  QVLKELREKDIHTAVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   +L V+ +   V V    + L GKE++++      +N  L K    + ++ 
Sbjct: 121 KLMDSSLYYKNLKVDTERNVVTVDEKEVELLGKEFELLVYFLQNQNVILPKSQIFDRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + +++V++ K+RKKL       + ++T+   GY+L+ N
Sbjct: 181 FDSDTTISVVEVYVSKIRKKLKGTKFVAD-LQTLRSVGYILKTN 223


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  I L+L  E FN    + G    E       D ++LDL L  + G EV
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIR  + R R  
Sbjct: 69  CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++  GD+ +++D +TV+     + +T  E+ ++  L       L+++  L+ ++ G 
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVW-GY 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +    +++V + +LR K  +  G   +I+TV G GY
Sbjct: 186 TDVSDSLVNVHVQRLRAKF-DELGADRFIQTVRGVGY 221


>gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 258

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+     I  +L+   + V   +      +L +  +FD ++ D+ +  + G+
Sbjct: 36  VKILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGY 95

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR    S P+  ++    I  K +G  SG DDY+ KP N  EL+ RI+A++RR++
Sbjct: 96  QFAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAK 155

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L++ G+L++N +A T +V    + +T +E+Q++  L    +   ++   +N  +D
Sbjct: 156 ITADNLLIVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWD 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +  ++ +DV+I KLR+K   A G    I+T+ G GY
Sbjct: 216 LASDTSMRAVDVYITKLREKFKAADGFT--IKTIHGLGY 252


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G + L
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  ++
Sbjct: 61  KIIR-EKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I    L++++D  +V   G  + LT  E+Q++ L +       TK+     
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYRS 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225


>gi|295702415|ref|YP_003595490.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800074|gb|ADF37140.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD +L H I   LK E + V     G++G+ L +   +DA+ILD+ L  + G 
Sbjct: 1   MRVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  K+ T V  L+   S+ED+V+GL  GADDY+ KPF   EL AR+R ++R  +
Sbjct: 61  DILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I  G +S+      V +    + LT KE+Q++E     K   L ++   N ++ 
Sbjct: 121 AE-EGMISYGPISIREANHEVMINESALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLR 222
              +  V ++DV++  LRKKL   N  G   Y+ TV G G++L+
Sbjct: 180 FTSDVGVGVVDVYVHHLRKKLQPFNCDG---YVRTVRGVGFMLK 220


>gi|269217233|ref|ZP_06161087.1| DNA-binding response regulator MtrA [Slackia exigua ATCC 700122]
 gi|269129370|gb|EEZ60455.1| DNA-binding response regulator MtrA [Slackia exigua ATCC 700122]
          Length = 237

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+LI+DD++L   +  +   E ++   +D G  G+E+ +    D ++LD+ L D+ GF+
Sbjct: 3   KIMLIDDDESLRELVGQIAAREGWDYCCSDNGAAGLEMLRRERPDVLVLDVMLPDMNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      PV  LS    I DK  G  SGADDY+ KPF  EELV R++  +     
Sbjct: 63  VCRLIRSEGRRVPVVFLSAKGDIVDKSVGFNSGADDYLVKPFLTEELVLRVKVWLNRRAR 122

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+     GDL V        ++G  + L+ +E++++ LL+    T  T+E  
Sbjct: 123 AAAATDARAKGSFRVGDLEVFFKKYEARLRGEAVALSSREFELLALLASEAGTVFTREQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ L++ R+  +   + V + K+R+K+ +      Y+ TVW  GY L
Sbjct: 183 IDALWEHREAADPNTVTVLVRKIREKIEDDPSKPRYVLTVWRVGYKL 229


>gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus
           GG]
          Length = 266

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++  +  ++L L+ E + +     G+  ++  K   FD ++LD+ L +  GF 
Sbjct: 36  KILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEKNGFN 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ LR  K+ TPV I++     +D+V GL  GADDY+ KPF+   L ARI+A +RR+  
Sbjct: 96  VLKELRQTKM-TPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  + H QS +   DL ++   +TV     R++LT KEY++++LL +      +K+
Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++      +   ++V I +LR K+ +    + YI TVWG GYVL
Sbjct: 215 AIYEKVWGESYIGDENTVNVCIKRLRDKIQDV--NQRYIRTVWGIGYVL 261


>gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L +E F+      G +G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGNMLCEYLTAEGFSTSQVMTGREGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRDR-QIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 119 SRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R  A + + T   GDL +N   ++ E  G    LT  E+ ++ELL       +TK+   
Sbjct: 120 DRSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLALLDGCTLTIETVRSVGYRIR 226


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +IE+ L++E + ++    G + +EL +  E   II+D+ +  + G 
Sbjct: 1   MNILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
                +R  K + PV +LS  S   DK+ GL  GADDYI+KPFN  EL+ARI++ +RR  
Sbjct: 61  RATMKIREEK-NIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFT 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++  TG L+++ ++K + V G  IHLT  +Y++++LL+       + +   
Sbjct: 120 ILGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I K+R+K+        Y++ VWG GY
Sbjct: 180 EKVWNETAFSPENTVAVHIRKIREKIEINPKEPKYLKVVWGIGY 223


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 12  ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIHM 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 72  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 130

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +I        G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 131 NGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 191 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGY 233


>gi|86356687|ref|YP_468579.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86280789|gb|ABC89852.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   +  I            V   G DG+   +   +D I++D  L  + G 
Sbjct: 4   MRILLIEDDIKTSDYIAKGFTEAGHVCDVFGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR AK+ TP   L+ +  ++D+V GL++G DDY++KPF   EL+AR+ A+ RR  
Sbjct: 64  AIIRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPP 123

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++L  +     G  I L  +E+ ++E+L   +   +TK M L  ++
Sbjct: 124 VQEQRTVLKVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+      +  + T+   GY L
Sbjct: 184 DFHFDPKTSVVETHISRLRAKVDKPFQAQ-LLHTIRNTGYSL 224


>gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator
           [Polaromonas naphthalenivorans CJ2]
 gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator,
           winged helix family [Polaromonas naphthalenivorans CJ2]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+   A  +   L    + V V   G DG+      +   +ILD+ L  I GF
Sbjct: 1   MKILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++   PV +L+   + +DKVRG   GADDY+ KPF   EL+AR+RA+++R +
Sbjct: 61  AVLSALRTSR-QIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQ 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++   DL ++         G RI L+ KE+ ++ LL+ R    L++    + ++
Sbjct: 120 PVVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +++V I +LR K+ +    K  I TV G GYVL   A
Sbjct: 180 DIHFDSDTNVVEVAIRRLRAKIDDPFDDK-LIHTVRGVGYVLERRA 224


>gi|302188270|ref|ZP_07264943.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSAGLTVDVLHDGVAADLALNSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFMLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  +A  IE  ++ + F   +   G  G +L   ++F  II D+ L  I G 
Sbjct: 1   MDILIIEDDLRVAQLIERAVREQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R  K   P+ +L+ + + ++KV G  +GADDY+ KPF   EL+ARIRA+++R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   A  ++   DL +NL+ K V+  G  I LT KE+ +++         L++     +
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   +     IDV+I  LRKK+      K  I T  G G++LR
Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKIDKDFNHK-LIHTKPGMGFILR 224


>gi|237803881|ref|ZP_04591466.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025861|gb|EGI05917.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   +++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKIDLPYPVK-LIHTVRGIGYV 218


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 14/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 5   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR+RA +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR--- 120

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           H Q +          I+ G L +  DA  V  +G  I LT +E++++  L+      +T+
Sbjct: 121 HTQIVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   ++
Sbjct: 181 EHLLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 236


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++    +   L+ E + V     G   IEL + +  D ++LDL L  +PG E
Sbjct: 3   RILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR+     PV +L+      DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRRLRLTS-DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREA 121

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                             L+V+G + +++D  TV+V+G  +    KE+ ++E+L      
Sbjct: 122 AVVAGAGAPAPVLDEEDGLLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGR 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LT+   ++ ++      + K +DV + ++R K+         + TV G GY L E
Sbjct: 182 VLTRGQLIDRIWGSDYVGDTKTLDVHVKRVRAKIEADPANPTLLLTVRGLGYKLEE 237


>gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
 gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDD   A  +   L     +    + GE G+E      +D +I+D  L    G 
Sbjct: 2   LKLLIIEDDAEAAAYLAKGLDELGHSADRAEDGEAGLEQAMAGSYDVLIVDRMLPKRDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR A   TPV ILS +  ++D+V+GL++G DDY+ KP+   EL AR+ A+ RR +
Sbjct: 62  SVIESLRSAGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  ++    GDL ++  A +       I L  +E++++E L       +T+ M L ++
Sbjct: 122 ASGDLETTYQVGDLVLDRLAHSCRRGDVEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++   +P+  +IDV I +LR K+      K  ++T+ G GY +RE  +
Sbjct: 182 WEYHFDPQTNVIDVHISRLRAKIDKDF-DKPLLQTIRGAGYSIREQTR 228


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 13/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   +   L+   F+V     G++ ++       D  +LD+ L D+ GF +
Sbjct: 11  VLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFTI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           LR LR      PV  L+    ++DK++GL  G DDYI+KPF+ EE+VARIRA++RR+   
Sbjct: 71  LRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPS 130

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A + ++T GDL +N +   V   G  + L+  E++++  L +     ++K   L+H++D
Sbjct: 131 DADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKN----------YIETVWGRGYVLR 222
                EV I++ +I  LR+K+ +A A G             I T  G GYVLR
Sbjct: 191 YNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVLR 243


>gi|329939961|ref|ZP_08289243.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329300787|gb|EGG44683.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F V     GE+ +   + +   FD ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFEVTHARSGEEALRALVPESAGFDVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +      G+ ++ +  G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 120 TPHTDDTGNVETALRLGAVHIELPTRQVRVDGTPVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWQTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 223


>gi|238926849|ref|ZP_04658609.1| two component response regulator [Selenomonas flueggei ATCC 43531]
 gi|238885381|gb|EEQ49019.1| two component response regulator [Selenomonas flueggei ATCC 43531]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL EDD  L   I+ ML+  + +V +VTD G D      + E+D +ILD  +    G
Sbjct: 1   MRVLLAEDDLRLGKLIQYMLEQNDISVEWVTD-GSDIYAYATYTEYDILILDWMMPGESG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +    LR       + +L+   S+ED+V+GL +GADDY+ KPF   EL+AR+RA+ RRS
Sbjct: 60  VDACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRS 119

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ +
Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +     ID ++  LRKKL +AAG +  I+T+ G GY L
Sbjct: 180 WGLEADVSSNNIDSYMKMLRKKL-DAAGEEASIKTIRGVGYKL 221


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    S     DL   LD KT EV+     I LT +E+ ++  L   +N  L +E  + 
Sbjct: 124 VKEEENSSYQIADLY--LDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  ++DV+I  LRKK+ +       + TV G GYVL+
Sbjct: 182 NVWGFDYYGDTNVVDVYIRYLRKKV-DCNVDVPLVHTVRGVGYVLK 226


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL L+++ ++VY    G++ ++     + D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  QILKQIR-EKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEM 173
            + +       +I  G L +N  +         + LT  E+ ++ LL   +   + ++E+
Sbjct: 120 QYNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           F    ++   +     + V I  LR+K++   G  ++I+TVWG GY + E
Sbjct: 180 FEKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   LK+E +++     GE+ +E  +    D ++LDL L    G E
Sbjct: 3   KILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREIR-KDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     S IV GDL V+ +A     +G  I LT +E++++  L+      +T+E  
Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV I +LR+K+ +     +YI T  G GY L+
Sbjct: 182 LETVWGYDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGYFLK 229


>gi|295106136|emb|CBL03679.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 238

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+   I   LK + + +     G   +        D IILDLGL D  G ++
Sbjct: 13  VLIVEDDNAVKSLIATALKVQGYRLLEAGTGGAALLEATTKNPDVIILDLGLPDADGIDL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R     TP+ ++S  +   DKV  L +GADDY+ KPF+ EEL+AR+R   RR    
Sbjct: 73  IRQVRTWS-HTPIIVVSARTEDADKVAALDAGADDYLIKPFSVEELLARLRVATRRLAAD 131

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +     +   GDL ++  A+TV + G  +HLT  EY+++ LL+      LT    L  
Sbjct: 132 SGTDRDGPVYENGDLRIDYAARTVTLAGEEVHLTPIEYKLLALLARNTGKVLTHNAILKE 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      ++  + VF+  LRKK+        Y++T  G GY
Sbjct: 192 VWGNALASDLPSLRVFMATLRKKIERDPAHPAYLQTHVGIGY 233


>gi|225570581|ref|ZP_03779606.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM
           15053]
 gi|225160594|gb|EEG73213.1| hypothetical protein CLOHYLEM_06683 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  + + ++ +L  E +       G + + L    + D I+LDL L  + G E
Sbjct: 8   KILIIDDDMYIGNMLDELLTREGYFTGRAYSGTEALLLLSREKPDLILLDLMLPGLSGEE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L  L       PV I+S  +S++DKV  L  GA DYI+KPF+ +EL+ARI   +R +  
Sbjct: 68  ILPELE----GIPVIIMSAKTSVDDKVTLLLGGAADYITKPFDTKELLARIAVQLRSTAV 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +V  D++V+  + TV V G  + +T  EY +++LL    +   TK + L H+ +
Sbjct: 124 TSAAHSLVFDDITVDTASHTVHVHGLPVRMTRTEYAILKLLMQNPSQVCTKSVILEHISE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     + V +  +RKKL + AG K+YIE+VWG G+ ++EN
Sbjct: 184 DTPDCTESSLKVHVSNMRKKLQD-AGRKDYIESVWGIGFKMKEN 226


>gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  +    +     V     GEDG+      ++D +++D  L    G 
Sbjct: 13  MRLLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRMLPRRDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR    +TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 73  SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+         I TV G GY++R
Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGF-DVPLIHTVRGAGYMVR 234


>gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 133/233 (57%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A +++ +LKS+ F   V +   D     +   ++ I+LDL L D    
Sbjct: 1   MRVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ L+       + ++S  S+  DK+ G++ GADDY+ KPFN  E+VAR++A +RR++
Sbjct: 61  NEIQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I  G L +      V   G +I LT KE+++++LL+ R +   ++E  L  ++ 
Sbjct: 121 G-IKEVIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIW- 178

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             DE +V  +++DV I  LRKKL     GK++I TV G GY   +    ++ E
Sbjct: 179 -TDEYDVFDRVVDVHINSLRKKL-----GKDWIITVRGVGYKFSKKGDAQSSE 225


>gi|299065376|emb|CBJ36545.1| Transcriptional regulatory protein [Ralstonia solanacearum CMR15]
          Length = 243

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 126/241 (52%), Gaps = 20/241 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L +  F V V   G+  +   + +    +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDIAVAAVREHRPALVILDLMLPHMDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVAS 127

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +  H  +L V G+L ++   +TV  +G  + L   E+ ++ +L+    T L++
Sbjct: 128 VMPAAEPAAPHDDTL-VFGELVISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSR 186

Query: 172 EMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +
Sbjct: 187 DDILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWE 242

Query: 228 E 228
           E
Sbjct: 243 E 243


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A   +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 262

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 119/242 (49%), Gaps = 8/242 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLG-EDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD  +   +   L+ + F+V V   G E  I L      D ++LD+ L    G 
Sbjct: 16  RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R L   K   PV +LS      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR  
Sbjct: 76  SIARRLD-PKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +RG     I  GD +++   +   +    + LT  E+Q+++    R N  + ++  
Sbjct: 135 MEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQI 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           +++L         + IDV I +LR+K+        Y+ T+WG GY+   + +        
Sbjct: 195 MDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRSPRSPDAS 254

Query: 235 TA 236
           TA
Sbjct: 255 TA 256


>gi|207744605|ref|YP_002260997.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|206596011|emb|CAQ62938.1| response regulator protein [Ralstonia solanacearum IPO1609]
          Length = 243

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 127/240 (52%), Gaps = 18/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  +   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +         ++V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 ALPAAEPAVPHDDVLVFGELAISPPNRTVTWRGQLVDLKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +E
Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>gi|167856144|ref|ZP_02478884.1| transcriptional regulatory protein CpxR [Haemophilus parasuis
           29755]
 gi|167852740|gb|EDS24014.1| transcriptional regulatory protein CpxR [Haemophilus parasuis
           29755]
          Length = 241

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 122/236 (51%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +   L  E F+++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   KILLVDDDVDLTELLSESLSLEGFDIHTVHNGQDALTELEIQNYDLILLDVMMPILNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RRS  
Sbjct: 63  TLKQIR-QKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRSIT 121

Query: 122 HAQSLIVTGDLSVN--LDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRK 165
              S+ V     +N   D K ++  G  +H              LTG E+ ++++L    
Sbjct: 122 QKPSIPVETTFVINDDDDRKLLQFGGVELHPGRQQAIYEGKDLDLTGTEFALLQILMRNP 181

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L +E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 GQILLRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E         G+  +   +    D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R +  
Sbjct: 64  VCRQIR-AESGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++   +V   G  + LT  E++++  L+ +     T+E+ L  ++  
Sbjct: 123 RPPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGY 220


>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 231

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 127/226 (56%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + ++ D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPRLSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R L   +    + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR 
Sbjct: 63  VCRKLE-DRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q +I    L++NL  +T+  +G  + LT KE+ ++ LL+       ++E 
Sbjct: 122 PEAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++D       + +D+ + +LRKKL N       I+TV+G GY
Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGNQ---HEVIQTVYGIGY 224


>gi|315650084|ref|ZP_07903162.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315487667|gb|EFU77972.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA S++ + +    +      G +G+EL +   FD ++LDL L  + GF
Sbjct: 1   MNILIVEDEVLLASSLKEIFEECGHSTICAYDGMEGLELARSSHFDILVLDLMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR  K   P+ +L+  S I D+V GL SGAD Y++KPF++ EL+A + A++RR  
Sbjct: 61  QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR-H 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I  G+ ++++D+  +    + I L+ KE+QM+ LL       ++K +FL  +++
Sbjct: 120 GKEVNQISYGNTTLDIDSGELISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWE 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V+I  LRKKL   +   + I +  G GY L
Sbjct: 180 YDSDATENNVEVYIGFLRKKLKTLSSDISIIAS-RGLGYHL 219


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  LK E +++     G DG +       D I+LD+ L  + GF+V
Sbjct: 5   ILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMNGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K S P+ +++      DK+ GL+ GADDYI+KPF+  EL+AR++A +RR+   
Sbjct: 65  CRHIR-EKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSMP 123

Query: 120 -RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A+S LI   +L ++    +V      + LT +EY++++ L+++ N   ++E  L  
Sbjct: 124 NNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLKQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV I +LR+KL + A    YI T  G GY  +
Sbjct: 184 VWGYEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFFK 228


>gi|330992747|ref|ZP_08316691.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
 gi|329760225|gb|EGG76725.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +++  ++ +   V      ED         +D ++LDLGL D  G 
Sbjct: 1   MRILIVEDEHDLGAAVQECVRLDGHAVDWFTTIEDARAALATVAYDFMLLDLGLPDGNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++LR +R       + + +    + D++ GL  GADDYI KP++  ELVARI A+ RR  
Sbjct: 61  DLLREIRRTSSDIAILVTTAEDQVSDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYA 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  AQ  I  GD++++ + ++V   G  ++LT +E+ ++ELLS       +++     
Sbjct: 121 APRRQAQYHI--GDITIDRENRSVSRAGQGLNLTAREWAIMELLSRSPGRIYSRQQIDTA 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY    + +   ++VFI +LR+K+     G   I T+ GRGY L E
Sbjct: 179 LYALDQDVDSNTVEVFISRLRRKV-----GNTVIRTIRGRGYCLDE 219


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A   +       +   +   G+DG++     ++D IILD+ L  + GFE
Sbjct: 3   RILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  ++  P+ I+S  +   DK+RG   GADD+++KPF+  ELVAR +A + R  R
Sbjct: 63  ICKTIR-ERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +   I   D      L++N  +  V V    + LT KE++++  ++   N   +K+  
Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I ++R+KL        +IETVWG GY
Sbjct: 182 FEKIWGLDSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGY 226


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPG 59
           RIL++ED+ A+   + + L+   ++V   + GE  ++  +    EFD  ILD+ +  I G
Sbjct: 3   RILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
             V + LR    +  + +L+  +   DKV GL  GADDY++KPF+  ELVAR+ ++ R  
Sbjct: 63  LTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRV 122

Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                R   + Q  +V+GD  +NL  + ++ +G  I LT  E+Q++E         L + 
Sbjct: 123 AIAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRT 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L H++      E KI+DV I +LR K+ +      +I TVWG GY
Sbjct: 183 NILTHVWGEAYYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGY 229


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL ++     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGDSG---EYIKTIYGVGYKL 221


>gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 255

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 36  MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 96  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 216 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 255


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D +ILD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|15801327|ref|NP_287344.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 EDL933]
 gi|15830856|ref|NP_309629.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. Sakai]
 gi|168749733|ref|ZP_02774755.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756469|ref|ZP_02781476.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762547|ref|ZP_02787554.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770998|ref|ZP_02796005.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776057|ref|ZP_02801064.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782467|ref|ZP_02807474.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787605|ref|ZP_02812612.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|168800458|ref|ZP_02825465.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|195938762|ref|ZP_03084144.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807257|ref|ZP_03249594.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816336|ref|ZP_03257515.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822245|ref|ZP_03262564.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395806|ref|YP_002270047.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328143|ref|ZP_03444225.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254792590|ref|YP_003077427.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. TW14359]
 gi|261227231|ref|ZP_05941512.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258762|ref|ZP_05951295.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. FRIK966]
 gi|291282165|ref|YP_003498983.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|81764773|sp|Q8X738|PHOP_ECO57 RecName: Full=Transcriptional regulatory protein phoP
 gi|12514781|gb|AAG55956.1|AE005328_14 transcriptional regulatory protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13361066|dbj|BAB35025.1| transcriptional regulatory protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768498|gb|EDU32342.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015943|gb|EDU54065.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999973|gb|EDU68959.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356343|gb|EDU74762.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360170|gb|EDU78589.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367118|gb|EDU85534.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372453|gb|EDU90869.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC869]
 gi|189377228|gb|EDU95644.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC508]
 gi|208727058|gb|EDZ76659.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732984|gb|EDZ81672.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737730|gb|EDZ85413.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157206|gb|ACI34639.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           EC4115]
 gi|209772868|gb|ACI84746.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772870|gb|ACI84747.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772872|gb|ACI84748.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772874|gb|ACI84749.1| transcriptional regulatory protein [Escherichia coli]
 gi|209772876|gb|ACI84750.1| transcriptional regulatory protein [Escherichia coli]
 gi|217318570|gb|EEC26996.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591990|gb|ACT71351.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O157:H7 str. TW14359]
 gi|290762038|gb|ADD55999.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Escherichia coli O55:H7 str. CB9615]
 gi|320187857|gb|EFW62527.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. EC1212]
 gi|320637598|gb|EFX07398.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. G5101]
 gi|320643158|gb|EFX12359.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. 493-89]
 gi|320648095|gb|EFX16771.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H- str. H 2687]
 gi|320653928|gb|EFX22002.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320659408|gb|EFX26977.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664545|gb|EFX31696.1| DNA-binding transcriptional regulator PhoP [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326339409|gb|EGD63221.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1044]
 gi|326341468|gb|EGD65259.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7
           str. 1125]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++   R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLICRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   +  E   IDV + +LRKK+  A   +  I TV G+GY+ 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTVRGQGYLF 220


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED + +   I + L+  +++V     G +G+ L     FD IILD+ L  + G +
Sbjct: 4   RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR   I TP+ +L+   S  D+V GL++GADDY++KPF+  EL AR++A +RR   
Sbjct: 64  VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   A   +  G+L ++   + + +    I LT KE+ ++  ++       ++E  
Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++  +       ++  I +LR KL        Y+ TVWG GY
Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGY 228


>gi|312130796|ref|YP_003998136.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311907342|gb|ADQ17783.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+IEDD  L  +I   L++E F+V   D   DG+   +F    ++  IILD+ L   
Sbjct: 1   MNILVIEDDPTLNKNIAEALQAEGFHV---DGVFDGLLAERFLSKKDYHTIILDINLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EVL + R     TPV +L+    +EDKV+G   GADDY++KPF   ELV R++++ +
Sbjct: 58  NGYEVLASFREKDEETPVLLLTAFGELEDKVKGFDLGADDYLTKPFFMRELVLRVQSLTK 117

Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  S    ++++V  D+ V+L  KTVE QG  I LT +E+Q++  L       ++K   +
Sbjct: 118 RKLSGMGRKNVLVFEDIRVDLGRKTVERQGKEIILTPREFQILVRLCQTPGELVSKAELI 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++    E     I+V+I  LR KL      K  I+T  G GY L E+
Sbjct: 178 EEIWGTTLEVNTNTIEVYINFLRNKLDKPF-HKQSIKTKVGYGYYLHED 225


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   ++V +   G++ +   +  + D  +LD+ +  + G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR +    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+R
Sbjct: 61  GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120

Query: 121 GHAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             A      G       DL +++ ++ V      I LT  E+ ++ LL       LT++ 
Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++          ++V+I  LR+K + A G    I TV G GYV+RE+A
Sbjct: 181 ILEEVWGHEFPSSGNALEVYIGYLRRK-TEADGEPRLIHTVRGVGYVMRESA 231


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++ +    D I++D+ L DI GF V
Sbjct: 13  IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 73  TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 132

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 133 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 192

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLR 222
                +  I++ +I  LRKK+      N  G        IET  G GY++R
Sbjct: 193 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 243


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   +       FD +ILDL +  + G  
Sbjct: 3   KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R   I+TPV IL+      DK+ GL+SGADDY+ KPF+  ELVAR+RA++ R+  
Sbjct: 63  CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTMP 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 123 RPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L      ++YI TVWG GY    +A
Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKC---RSYIATVWGIGYKFDPDA 226


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+    + D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDYI KPF+ +EL ARI  I+RR   G
Sbjct: 88  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 SATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|15597719|ref|NP_251213.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107101969|ref|ZP_01365887.1| hypothetical protein PaerPA_01003016 [Pseudomonas aeruginosa PACS2]
 gi|116050466|ref|YP_790715.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984654|ref|YP_001348074.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218891499|ref|YP_002440366.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235520|ref|ZP_04928843.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|254240954|ref|ZP_04934276.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|296389055|ref|ZP_06878530.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107420|ref|ZP_07793610.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948578|gb|AAG05911.1|AE004679_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|5921515|emb|CAB56468.1| czrR protein [Pseudomonas aeruginosa]
 gi|115585687|gb|ABJ11702.1| putative DNA-binding heavy metal response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167451|gb|EAZ52962.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|126194332|gb|EAZ58395.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|150959812|gb|ABR81837.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218771725|emb|CAW27499.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|261411913|gb|ACX81358.1| CzcR [Pseudomonas aeruginosa]
 gi|310880112|gb|EFQ38706.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ +   + ++ +ILD+ L  I G+
Sbjct: 1   MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR LR  + S  V +L+G   + DKVRGL  GADD++ KPF   EL+AR+R+++RR  
Sbjct: 61  DLLRRLR-ERSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHD 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   Q ++   DL ++           RI+LT KE+ ++ LL  R    +T+   ++ ++
Sbjct: 120 QAPMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V IC+LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDNDSNVVEVAICRLRAKIDDGFDLK-LIHTIRGVGYVL 220


>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 249

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   + L L+ E F+V     G +G+     +  D ++LD+ L    GF 
Sbjct: 31  RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A+ + PV +L+   S++D++ GL+SGADDY++KPF   ELVARIR ++RR+R 
Sbjct: 91  FLRDLR-ARDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRARP 149

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL +N  ++     G R+ +    + ++  L+      L K + L+ ++  
Sbjct: 150 DTLGIVRYADLELNETSREARRGGQRLDMRPTTFDLLVFLARHPERVLPKSVILDAVWGP 209

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++++++   R+ L    G    + T+ G GY+L+E 
Sbjct: 210 QFLGSDNVVELYVGYARRAL----GTPPLLHTLRGAGYMLKEQ 248


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E + V     GE+ IE+      + I+LD+ L    GF+
Sbjct: 4   KILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K++ P+ +L+      DKV GL+ GADDY++KPF   EL+ARI+A +RR   
Sbjct: 64  VCKKLR-EKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    Q L+   DL ++L +  V  +G+ + LT +E+++++ L+ +     ++E  L  
Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +++ +DV I +LR+K+ +     +YI+T  G GY    N
Sbjct: 183 VWGYEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ +A  + L L+ E + +     G   + L     +DA+ILDL L  + G E
Sbjct: 6   KILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++ + G       L+++  A+ V ++G  + LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGY 229


>gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
 gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
          Length = 253

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           R+L+ EDD  L  S+E       + V+    GED + E+     +D ++LD+ L    GF
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R + + +PV +L+     E K+RG   GADDY++KPF+ + L AR+ A++ RS+
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +   G++SV+   +TV      I LT  E+ ++      +  T+++E  L  
Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPIGLTDLEFDILTYFIEHRGRTVSREQLLRD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +   + ID  +  LRKK+        Y++TV+G GY
Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDDPAYLQTVYGIGY 235


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 11/238 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRK-KLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR  K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEPKMNE 241


>gi|330825319|ref|YP_004388622.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329310691|gb|AEB85106.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 221

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 117/205 (57%), Gaps = 1/205 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR R
Sbjct: 61  QVLQSLRNRGLQMPVLYLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  ++  +   DL ++L  + V   G RI LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA 204
           D   + +  +I+V + +LR K+   
Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKIDEG 205


>gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 231

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MRILL+ED+  L ++I+  L   N   Y+ D  +DG E     E     +   I D  L 
Sbjct: 1   MRILLVEDENDLGNAIKRALIQHN---YIVDWAQDGEEANDLIEIGLNLYTIGIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G ++++ +R      P+ +L+     EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  KISGIDLIKKIRQQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
            RR        +  G ++++    T+  Q        + LT KE+Q++E      N  +T
Sbjct: 118 QRRFPTINPQKLTVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIIT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  L+ L++  +EP   ++   I  LR+KL   +G +N IETV+G GY
Sbjct: 178 RDQILSQLWEWGNEPMSNVVAAQIRLLRRKLE-PSGMENCIETVYGLGY 225


>gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++   G + ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R     + +D F+ +LR  + + A    ++ETV G GY
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226


>gi|311107856|ref|YP_003980709.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
 gi|310762545|gb|ADP17994.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K LA  +   L   N+ V V   G  G+ L +  ++D ++LD+ L  + GF
Sbjct: 1   MKVLVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPAMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R      PV +L+    +ED+V+GL+ GADDY++KPF   EL+AR+ A+ RRS 
Sbjct: 61  SVLAEIRKTS-RVPVLMLTARDKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRS- 118

Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH      AQ+++    L ++L  +     G R+ LT KE+ ++ LL  ++   L++   
Sbjct: 119 GHGQTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFTLLALLMRKQGEVLSRLEL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++D        +++V I +LR K+ +    K  + TV G GYVL
Sbjct: 179 AEQVWDINFNSNTNVVEVAIRRLRGKV-DEPFDKKLLHTVRGMGYVL 224


>gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 263

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+  A  +    +     V V   GE+G+ L +   +D +++D  L    G 
Sbjct: 38  MRLLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRMLPRRDGL 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 98  ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   +    DL ++  A      G  I L  +E++++E L       +T+ M L +++
Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV + +LR K+         + TV G GY++R+  +
Sbjct: 218 DYHFDPQTNVIDVHVSRLRSKIDKGF-DPPLLHTVRGAGYIIRDGVR 263


>gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC
           14931]
 gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC
           14931]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 120/202 (59%), Gaps = 1/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL ED+K L+ ++   +++  ++V     G++ ++L     +D IILD+ +  + G 
Sbjct: 1   MNILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ LR     T V +L+ M+ I+DKV GL +GADDY++KPF+ +EL+AR+R++ RRS 
Sbjct: 61  EALKQLRQTGNKTYVIMLTAMAEIDDKVTGLDAGADDYLTKPFSLKELLARLRSLERRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   D++++ D + +E   + I L+GKE +++  L       +   + L+  +D
Sbjct: 121 DYQEDVLNFADITLDNDEQRLESH-NSISLSGKETKLLAYLMKNPGKAIESSILLDQGWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             DE +   + ++I  LR+KL 
Sbjct: 180 KDDEADETDLWIYISYLRQKLQ 201


>gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
 gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR S  
Sbjct: 64  CKIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSAD 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           ++ S ++   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  ++ + 
Sbjct: 123 NSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIF 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  +EL L+++ + V+    G+D ++     + D  ILD+ L DI GF
Sbjct: 5   MNILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 65  QILKQIR-QKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCT 123

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEM 173
            + +     GD      L +N  +         + LT  E+ ++ LL   +   + ++E+
Sbjct: 124 QYNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           F    ++   +     + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 184 FEKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233


>gi|329896136|ref|ZP_08271349.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
 gi|328921955|gb|EGG29320.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
          Length = 214

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 120/216 (55%), Gaps = 5/216 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED+ +LA  +   L+ E F V   D G       K    D ++LDLGL D+ G ++L +
Sbjct: 1   MEDEHSLAQGVVSGLEREGFVVDWVDSGRLAETAVKADPPDIMVLDLGLGDMDGLDLLAS 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           +R  K   P+ IL+    ++DKV+GL +GADDY++KPF+  EL AR+R + RR    + S
Sbjct: 61  IRQKKHRFPILILTARGEVDDKVKGLDAGADDYMAKPFDFLELCARLRVLERRLGTASTS 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
            I   ++ ++++   VEV G  + L  +EY +++ L   +   +T++   + LY   DE 
Sbjct: 121 TISISNVVLHINTHQVEVGGKDLDLPRREYMLLKCLMENQGRVVTRDQLESRLYHWGDEI 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++V +  LRKKL +A     +I+T+ G GY +
Sbjct: 181 SSNALEVHVHHLRKKLPDA-----FIKTIRGLGYTV 211


>gi|289643275|ref|ZP_06475400.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506915|gb|EFD27889.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 253

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G++ +      + D ++LD+ L+DI GFE
Sbjct: 13  RVLVVDDEANITDLVRMSLRFHGFDVVTATCGQEAVAAVAEAKPDLMVLDVLLSDIDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR      PV  L+      DK+ GL  G DDY++KPF+ +ELVAR+RA++RR+R 
Sbjct: 73  VCRRLRDVGTDVPVIFLTARDRHADKIAGLTCGGDDYVTKPFSVDELVARVRAVLRRTRR 132

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +   D+ +N D   V   GH I L+  E++++  L       L++   L+ 
Sbjct: 133 DRPSAAAQTLAFADVVLNEDTHEVARAGHPIDLSPTEFKLLRYLLANPRRVLSRVQILDA 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +    ++D ++  LR+KL  A  G   I T  G GY+L
Sbjct: 193 VWNYDFDGAYTVVDQYVSYLRRKL--APYGPPLIHTQRGFGYML 234


>gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 129/222 (58%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+ L     +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARIRA++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G + S ++T G L ++  A+ V      + LT KE+ ++E L++R    ++K   L H++
Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL  AA     I TV G GY L
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRL 217


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++A  + L+L+SE F V V   G + + L +    D ++LD+ L  + G  
Sbjct: 4   RILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLDGVS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ ++S  +   D + GL++GADDY++KPF    L+AR++A +RR   
Sbjct: 64  VCRLIR-EESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L V+ DL+++L A  V+  G  +HLT  E++++ +L+ +     ++E  L  ++  
Sbjct: 123 EHEVLRVS-DLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGY 181

Query: 182 RDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R    + ++++V I +LR K+ +       + TV G GY
Sbjct: 182 RQSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGY 220


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +++ I+L L   N+       GE+ ++  +   FD I+LD+ L  I GF
Sbjct: 2   IKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVMLPKIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   ++  +  PV  L+  +S+ DKV GL++GADDYI+KPF   EL+ARI  ++R   
Sbjct: 62  TLLE--KIKPLGIPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  ++I   D+ +NL+  T    G  + LT KE++++ +L   KN  LT+E  +  ++ 
Sbjct: 120 KNT-NVINFEDVEINLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E + ID  I KLRKKL      K+ I+TV+  GY L
Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRL 215


>gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
 gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ ++  I   L    +       G + + + +  EFD I+LD+ L  + GF+
Sbjct: 3   KILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  +R  +  TPV  L+ M  + D+V+GL+SGA+DYI KPF   EL+ARI  ++RR   
Sbjct: 63  VMEKIR--ETGTPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLRRFNR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++L    D++VN++ ++V      I LT KEY ++ L    +N  L+++  L  +++ 
Sbjct: 121 EQKNLSFR-DITVNMEERSVRRGSEIIDLTPKEYDLLVLFLKHQNVALSRDKILMDVWEC 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E + +D  + +LRKKL    G ++ ++TV+  GY L
Sbjct: 180 SANIETRTVDNHVQRLRKKL----GLEDCLKTVFKVGYRL 215


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G++ +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  + + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR  G
Sbjct: 63  VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRG-G 120

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+ ++      G + ++++   V V G  + L  KE+ ++E L       LT+   ++ 
Sbjct: 121 EAEDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR KL        Y+ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGY 222


>gi|53717517|ref|YP_105500.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53722482|ref|YP_111467.1| two-component response regulator [Burkholderia pseudomallei K96243]
 gi|67640031|ref|ZP_00438853.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819653|ref|YP_335649.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124382891|ref|YP_001024486.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126443643|ref|YP_001063069.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126447886|ref|YP_001078807.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126457711|ref|YP_001076011.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167002751|ref|ZP_02268541.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167744626|ref|ZP_02417400.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167820246|ref|ZP_02451926.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167828621|ref|ZP_02460092.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167850081|ref|ZP_02475589.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167898689|ref|ZP_02486090.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167907033|ref|ZP_02494238.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167915377|ref|ZP_02502468.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167923219|ref|ZP_02510310.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217425234|ref|ZP_03456729.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|254174447|ref|ZP_04881109.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254185252|ref|ZP_04891841.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186777|ref|ZP_04893293.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194369|ref|ZP_04900801.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204224|ref|ZP_04910583.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209196|ref|ZP_04915543.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264284|ref|ZP_04955149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254301543|ref|ZP_04968987.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254355518|ref|ZP_04971798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212896|emb|CAH38932.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52423487|gb|AAU47057.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584126|gb|ABA53600.1| two component response regulator [Burkholderia pseudomallei 1710b]
 gi|124290911|gb|ABN00181.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126223134|gb|ABN86639.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126231479|gb|ABN94892.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240740|gb|ABO03852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745108|gb|EDK52189.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750419|gb|EDK57489.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148023611|gb|EDK82673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157811217|gb|EDO88387.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934461|gb|EDO90131.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695493|gb|EDP85463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651120|gb|EDS83813.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184215844|gb|EDU12825.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217391839|gb|EEC31866.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|238520671|gb|EEP84129.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243061632|gb|EES43818.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254215286|gb|EET04671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 219

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   ++ +                     +D I+LDL L D  G 
Sbjct: 1   MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 61  DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  G+L+V++ A++V   G R+ LT  E+ ++E L       L+K      LY 
Sbjct: 121 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I+V + +LRKKL     G   IETV G GY LR +
Sbjct: 181 FSDEVGSNTIEVHVSRLRKKL-----GAELIETVRGLGYRLRRD 219


>gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           enterocolitica W22703]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE + V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    S P+ +LS  SS EDKV  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IQDLRQWS-SIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +Q   LI   D+SVNL  + V   G  +HLT  E++++  L       +T+   LN ++ 
Sbjct: 127 SQESPLINFSDISVNLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGY 225


>gi|121597839|ref|YP_990168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134284304|ref|ZP_01770993.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|237508768|ref|ZP_04521483.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242310946|ref|ZP_04809963.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|121225637|gb|ABM49168.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|134244344|gb|EBA44453.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|235000973|gb|EEP50397.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242134185|gb|EES20588.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   ++ +                     +D I+LDL L D  G 
Sbjct: 14  MRVLLVEDDPWLGEAVRAQIEKDGHPTDCVASLAHARRHVAVAPYDLILLDLLLPDGRGL 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR  
Sbjct: 74  DFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARRYS 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  G+L+V++ A++V   G R+ LT  E+ ++E L       L+K      LY 
Sbjct: 134 GNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERLYS 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I+V + +LRKKL     G   IETV G GY LR +
Sbjct: 194 FSDEVGSNTIEVHVSRLRKKL-----GAELIETVRGLGYRLRRD 232


>gi|17547654|ref|NP_521056.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17429958|emb|CAD16642.1| putative response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 235

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED+  LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEGELAAWLARALAQSGF---VVERAADGLAAEAFLASGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++   +     ++V + +LRKKL   AG    I TV G GY+L   A
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGSGVQIVTVRGLGYLLEAEA 222


>gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + GFE+
Sbjct: 5   VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R +  
Sbjct: 65  CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   L+   +++V+  A  V V  + +  T KEY+++  L    N    KE     
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  D  EV  + V I ++R+KL  A    + IET+WG GY
Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226


>gi|296115872|ref|ZP_06834496.1| two component response regulator KdpE [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295977560|gb|EFG84314.1| two component response regulator KdpE [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +++  ++ +   V      ED        ++D ++LDLGL D  G 
Sbjct: 1   MRILIVEDEHDLGAAVQERVRLDGHAVDWFMTLEDARAAIATVDYDFMLLDLGLPDGNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           ++LR +R       + I +    I D++ GL  GADDYI KP++  ELVARI A+ R   
Sbjct: 61  DLLRDIRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYA 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             R RGH +     G+++++ ++++V   G  + LT +E+ ++ELLS       +++   
Sbjct: 121 APRQRGHCR----IGEIAIDRESRSVSRDGRVLDLTAREWAIMELLSRNPGRIYSRQQID 176

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             LY    + E   ++VFI +LR+K+ N       I T+ GRGY L E   
Sbjct: 177 TVLYALDQDVESNTVEVFISRLRRKVGNTT-----IRTIRGRGYCLGEKGN 222


>gi|213965336|ref|ZP_03393532.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           amycolatum SK46]
 gi|213951952|gb|EEB63338.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           amycolatum SK46]
          Length = 247

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD A+A ++ + LK+  +   V       +     ++ DA++LDLGL D+ G E
Sbjct: 19  KILIVEDDVAMARTVLVSLKARGYEPRVAQTATRALAAVSEWKPDAVLLDLGLPDVSGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR+LR      PV I+S       K+  L  GADDY++KPF+  EL+AR+R+ +RR+  
Sbjct: 79  VLRSLRRWS-DIPVLIVSARHDEAGKINALNEGADDYVTKPFSMGELLARLRSTMRRASK 137

Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +       G L V+L  + V V    +HLT +E+ ++  L   +   +TK   L 
Sbjct: 138 VVVEEVPKVASADGHLMVDLAKRQVLVADELVHLTPREWDILVYLVQHRGELVTKLELLK 197

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + E E   + V+I +LR K+        Y+ T  G GY
Sbjct: 198 AVWGDQYEKETNYLRVYISQLRHKIEPQQAHNKYLRTEVGVGY 240


>gi|77359802|ref|YP_339377.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874713|emb|CAI85934.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 230

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V D G++     +    D IILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVDVLDRGDEVFTYLESNPVDLIILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKYTTPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           +  A   +  GDL ++  ++ V++ G  I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 NLKATEELQFGDLFIDKTSRIVKLSGAEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              YDG D    + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLD----RTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|296444493|ref|ZP_06886458.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296258140|gb|EFH05202.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 220

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L    + V     GE+   L    +F A++LDLGL  + G 
Sbjct: 1   MRILLVEDDERIAGDIARALVEAGYVVETIGNGEEAWFLGDTEDFAAVLLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV  LS   S  ++V+G+ +GADDY+ KPF  EEL+AR+R+++RRS 
Sbjct: 61  TVLERWREQGRNTPVLALSARGSWSERVQGIDAGADDYLPKPFRMEELMARLRSLIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S+   G +S++  +  +++    + +T  EY++I  L  R+   + +     H+Y 
Sbjct: 121 GRASSVTRNGRVSLDERSMQIKLGDAPVEMTAIEYRLIAYLMHRRGEVVAQSELAEHIY- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G D+ +   I+V I ++RKK+     G  +IET  G GY++
Sbjct: 180 GHDQQQSNAIEVLIGRVRKKI-----GAGFIETRRGFGYLV 215


>gi|291531321|emb|CBK96906.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 227

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L  ED+ ++A ++  +L   N+ V     G D ++  +  ++D IILD+ +    G 
Sbjct: 1   MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    +TP+ +L+  + +ED++ GL  GADDY+ KPF   EL++R+RA++RR  
Sbjct: 61  EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++S+NL +  ++     I L   EY+++ELL L K   L+ +  L  ++ 
Sbjct: 121 RFTPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDILVKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   + V+I  +RK+L+ A G    I      GY L
Sbjct: 181 YESDAESGAVWVYISYVRKRLA-AIGADIEIRAKRSVGYTL 220


>gi|254490751|ref|ZP_05103934.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463923|gb|EEF80189.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 234

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDK L   + ++L    F V  +  G+ G+      +FD I+LD+ L  I G+ 
Sbjct: 10  RILIIEDDKILNKQLRVLLDGAGFEVTQSYDGDAGLLTAVSDQFDLILLDVALPGIDGYN 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR ++  TPV +L+   + E+++ GL++GADDY+SKPFN  EL+ RI AI+RRS  
Sbjct: 70  VLKVLRQSR-ETPVIMLTAHGAEEERIIGLRNGADDYLSKPFNLTELLLRIEAILRRSLR 128

Query: 122 HAQSLIVTGDLS---VNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  +    ++   + LD  T EV   G +I  T  +++++ +L    + TL+K     
Sbjct: 129 QTKPEVSVSHMNRSGLQLDKTTQEVYFDGKKITFTPLQFKLLWILMQHPSQTLSKPQLYR 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +       + +D+ + ++R+KL  A    + ++TV G GY+L
Sbjct: 189 LVLERDFSRYDRSLDMHMSRVRRKLVAAGMPADRLQTVHGTGYIL 233


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++++   I L L +  + V     GE+ ++  K  + D ++LD+ L  I GF
Sbjct: 6   IKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +      T V +L+      DK+ GL+ GADDYI KPFN  EL ARI+A++RR  
Sbjct: 66  EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  ++  ++  G L +++ A  +      I LT  E+ +++     +   L +   LN +
Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + K +DV I +LR+K+ +     +YI+TVWG GY  ++ +
Sbjct: 186 WGENYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYRWQQES 232


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  I L+L  E FN    + G    E       D ++LDL L  + G EV
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIR  + R R  
Sbjct: 69  CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++  GD+ +++D +TV+     + +T  E+ ++  L       L+++  L+ ++ G 
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVW-GY 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +    +++V + +LR K  +  G   +I+TV G GY
Sbjct: 186 TDVSDSLVNVHVQRLRAKF-DELGADRFIQTVRGVGY 221


>gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN]
 gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 121/202 (59%), Gaps = 1/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL ED+K L+ ++   +++  ++V     G++ ++L     +D IILD+ +  + G 
Sbjct: 1   MNILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ LR     T V +L+ M+ I+DKV GL++GADDY++KPF+ +EL+AR+R++ RRS 
Sbjct: 61  EALKQLRQTGNKTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRSLERRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   D++++ D + +E   + I L+GKE +++  L       +   + L+  +D
Sbjct: 121 DYQEDVLNFADITLDNDEQRLESH-NSISLSGKETKLLAYLMKNPGKGIESSILLDQGWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             DE +   + ++I  LR+KL 
Sbjct: 180 KDDEADETDLWIYISYLRQKLQ 201


>gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 236

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E ++V   D+ +DG+E  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKADPSSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   IS P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  KKDGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRS      HA + I    VT  L ++ D + V      +  LT KE+ ++  ++ ++ 
Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|269839100|ref|YP_003323792.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790830|gb|ACZ42970.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   ++ +L +  + V V   GE+G+EL     FDA++LDL +  + G E
Sbjct: 9   RVLVIDDEHEILRILKSVLTNAGYAVSVASSGEEGMELFGLQPFDAVLLDLRMPGLSGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V   LR A+   P+ +LS M    DKVR L +GADDY+ KPF   EL+AR+RA +RR  S
Sbjct: 69  VCAWLR-ARSDVPIIVLSVMGEENDKVRALDTGADDYLVKPFGVAELLARLRAALRRAGS 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  + ++ +GDL+++L+ + V V G  + LT  EY +++ L++     +T  M L  ++
Sbjct: 128 KGQPEMIVRSGDLTIDLERRAVYVAGQLVRLTPTEYDVLKCLAVHGGKVVTHRMLLREVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   +   I ++R+KL +      YI T  G GY L
Sbjct: 188 GSEQPADTSNLRYTITQIRRKLGDDPTHPRYILTEPGVGYRL 229


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 23/235 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58
           +IL+++DD+ +A  I L L  E    Y T +  DG   L  F EF  + I+LD+ L  + 
Sbjct: 5   KILIVDDDENIAELISLYLNKE---CYETQIAADGTSALEAFVEFAPNLILLDVMLPGMD 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++V   +R  + + P+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RR
Sbjct: 62  GYQVCTEIR-KQSNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRR 120

Query: 119 SRG--------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                            H  + +   +L VN+   TV ++G  + +  KE +++  L+ R
Sbjct: 121 CNSRTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASR 180

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N   T+E  L+ L+      + + +DV I +LR+KL++       I TVWG GY
Sbjct: 181 PNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLTDKYNWS--IFTVWGIGY 233


>gi|109453254|gb|ABG34107.1| PhoP [Salmonella enterica subsp. enterica]
          Length = 213

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112]
 gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549]
 gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1]
          Length = 228

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224


>gi|257875264|ref|ZP_05654917.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257809430|gb|EEV38250.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            LLIEDD  +   +E++L+ E++N      G + + L +    D I+LDLGL DI G E+
Sbjct: 5   FLLIEDDSNIVDFMEVVLQREHYNFTSVGTGMEALMLLQEETIDFILLDLGLPDIDGMEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  +++TP+ ++S     +DKV+ L  GADDY++KPF+  EL ARIR  +R     
Sbjct: 65  LKIIR-KRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKETT 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + S   ++V  +L+++ + K +    + IHLT  EY+++ ++       +T +   + ++
Sbjct: 124 SFSSSPILVNKELTIDFEKKILYKNQNEIHLTKNEYRIMAVMFKNLGKVVTYDTLTSEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            G    + + + V I  +RKK+        Y+ T  G GY LRE
Sbjct: 184 -GPFAADAQTLRVNISNIRKKIETNTLQPEYLITEIGVGYRLRE 226


>gi|154503747|ref|ZP_02040807.1| hypothetical protein RUMGNA_01571 [Ruminococcus gnavus ATCC 29149]
 gi|153795847|gb|EDN78267.1| hypothetical protein RUMGNA_01571 [Ruminococcus gnavus ATCC 29149]
          Length = 237

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 15/235 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   +  +LK +++ V   D G++G+ L      D IILDLGL D+ G ++
Sbjct: 6   VLIIEDEKNIQTFVGKILKKQDYRVLYADCGKEGLNLIHSQCPDVIILDLGLPDMNGNDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R    STP+ ++S  S+ ++KV  L  GADDYI+KPF   EL+ARIR  +R    H
Sbjct: 66  IQEVRTW-TSTPIIVISARSAEKEKVLALDQGADDYITKPFGTSELLARIRTSLR----H 120

Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +  L  T           DL ++   + + +    +HLT  EY+++  L+      +T  
Sbjct: 121 SNRLYTTDSLYIRPYRYEDLVLDFSKRELTLDKQPVHLTPIEYKIVSYLAQNSGKVMTYA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +++++    + + KI+ V +  +R+KL        YI T  G GY ++E++ +
Sbjct: 181 AIISNVWGPYADDDNKILRVNMANIRRKLEKDPAQPKYIFTEVGVGYRMQEDSSE 235


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++++   +E+    E         G +G +  K  E+D +ILD  L  + G 
Sbjct: 10  MKVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGV 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R  +   P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARIRA+ RR +
Sbjct: 70  TICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQ 129

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
           G   +      I T D  ++ + + V ++G  + +LT KE+ ++  LS       ++E  
Sbjct: 130 GEKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++      + + +DV I +LR K+   +  K Y+ TVWG GY   E A
Sbjct: 190 LERVWGYDFYGDERTVDVHIKRLRNKI--GSNEKPYLHTVWGVGYKFDETA 238


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+ ++     + L+ E F V     G   +E+ K    D +ILD+ L ++ GFEV
Sbjct: 6   ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+      DK+ GL+ GADDY++KPFN  ELVAR++AI+RR+R  
Sbjct: 66  CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRHQ 125

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q++I  G++ V+     V    + I L  +E++++ +L+      L++E  L   +
Sbjct: 126 THEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLEKAW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LR+KL+++      IETV G GY L
Sbjct: 186 GFDFYGQTRTVDVHIAQLRRKLADSG---VTIETVTGVGYKL 224


>gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 239

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 1/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +DD A+  S+E  L+   F+V + D G   +   +    D ++LD+ + D+ G E
Sbjct: 8   RVLVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDISMPDLSGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR      PV +LS +  + D+V GLQ+G DDY+ KPF  +ELV R+ A++RR   
Sbjct: 68  VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  G L +  +A+   + G  + LT +E+++++  +      LT++  L+ ++  
Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             E     +D F+  LR+KL  A G    + TV G G+VLR +   E
Sbjct: 188 DFEVRTDAVDTFVSYLRRKL-EAGGRPRMLHTVRGVGFVLRPSGPPE 233


>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
 gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G +   L      D ++LDLGL D+ G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATGAEA--LADVRGVDLVVLDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  +   D+ +++ A    V    + LT KE+ ++ +L     + + ++  +  ++  
Sbjct: 122 PAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 K +D+ +  LR+KL + A   +YI TV G G+   ENA+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225


>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
 gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 105/206 (50%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 23  VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 83  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG 206
              E    I+DV+I  LR K+    G
Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFG 228


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  +   +EL L     +V   + GEDG+   +    + ++LDL L  I GFEV
Sbjct: 4   ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A    PV +L+      D V GL +GADDY+ KP     L ARIRA++RR+   
Sbjct: 64  CRGIRAAG-PVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAASS 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              + V  DL ++  + TV  +G  + LT  E +++  LS      L+++  L  +++  
Sbjct: 123 PDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +++D  + +LR K+        Y++TV G GY
Sbjct: 183 YLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGY 219


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD      +E  L +E F V     G++ ++L      D +ILD+ +  + GF 
Sbjct: 6   RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R A  + P+ +L+      DKV G + GADDY++KPF+  ELV R+ AI+RR   
Sbjct: 66  VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S  +  G L +N   +TV V      LT +E+ ++ L++       T+E  L  ++ 
Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G    +   + V I +LR+K+ +      +I+TVWG GY
Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGY 223


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + +E+ +    + I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     +++ +G        IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMIRE 240


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V V   G + +E  K+ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALE--KWKEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G+L +    + + V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D +ILD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-TKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 231

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  L  ++E  L+ E + V +   G  G       + D IILD+ L    GF V
Sbjct: 4   ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLPGRDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR A I+TPV +L+   S  D V GL+ GADDY++KPF+   L+AR+ A++RR+   
Sbjct: 64  CSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRATMA 123

Query: 123 AQSLIVTGDLS--------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +L   G+          ++LD + + +    + L+ +EY+++E L  R N  L+++  
Sbjct: 124 SSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRDQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++    E   + +DV + KLR+KL   A  + +I T+ GRGY
Sbjct: 184 MDEVWSYSSEATSRTVDVHVAKLRQKLGETAIPR-HILTIRGRGY 227


>gi|3401948|dbj|BAA32131.1| Orf3 [Streptomyces griseus]
          Length = 224

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L+   F         +   L     +D ++LD  +      
Sbjct: 1   MRVLLVEDDDDLRDVIGAGLRDGGFAWDCASDWPEADVLLHLSAYDCVVLDRMVPSGDTL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R A  S PV  L+ + S+++++RGL+SGADDY++KPF+  ELV R+R + RR+ 
Sbjct: 61  APLEGRRRAGWSVPVLCLTALDSLDERLRGLESGADDYLAKPFSMRELVLRVRGLSRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   D+ +++    V   G  + L+ KEY +++ L + ++T +T+   L H +D
Sbjct: 121 ARLPSFLGCADVVMDVARHEVRRGGVLLSLSPKEYAVLQQLLVHRDTVVTRTGLLEHCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++D  +  LR+KL    G    + TV G+G++L  +
Sbjct: 181 EMADPVSNVVDAVVAGLRRKL----GSPGLVHTVRGQGFLLSAD 220


>gi|333030607|ref|ZP_08458668.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741204|gb|EGJ71686.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 225

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K L+ ++   L + N+        E+G+E    Y +  I+LDL L D  G 
Sbjct: 1   MKILIIEDEKTLSDNMMRYLTANNYRCEQAFTYEEGLEKISLYSYSCILLDLNLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  KI + V I+S   +++DK+RGL +GADDY++KPF+  EL  RI A++RR  
Sbjct: 61  HLLEEIRNNKIDSGVIIISARGALDDKIRGLMTGADDYLAKPFSLPELSVRIYALLRRRL 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   +  + +  + ++L  KT +V G  ++LT  EY ++  L   KN  ++K     HL 
Sbjct: 121 GTTSTNTLESNGIVIDLLGKTAKVNGESLNLTKTEYNLLLFLIANKNRVISKNAIAEHL- 179

Query: 180 DGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D  ++      I   I  L+ KL+      + I TV+G GY   E
Sbjct: 180 -SGDMADMFNSHNFIYTHIKNLKAKLAQYNVDSS-IRTVYGTGYQWAE 225


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  IEL L+ E +   +   G   +E  +   +  I+LD+ L  + G E
Sbjct: 5   RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    +TPV +L+   +I DKV GL  GA+DY++KPF  EEL+ARIRA +R    
Sbjct: 65  VLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLS 124

Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +  G     DL VN   + ++     I LT +E+ ++  L       +T+E  L 
Sbjct: 125 TSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           H++      +  ++DV+I  +R+KL         I TV G GYV++E+ 
Sbjct: 185 HVWGFDYFGDTNVVDVYIRYMRQKLDKPFDAP-LIHTVRGVGYVMKESV 232


>gi|327482737|gb|AEA86047.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri DSM
           4166]
          Length = 223

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAI-ILDLGLTDI 57
           MRILL+ED   LA S+   L+   + V   DL  DGI  +L    E  A+ ILD+GL  +
Sbjct: 1   MRILLVEDHPQLAESVAQALRGAGWTV---DLLHDGIAADLALASEDYALAILDVGLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL  LR    + PV +L+    + D+V GL  GADDY++KPF   EL AR++A++R
Sbjct: 58  DGFQVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  +     G L  +LDA+   +    + LT +E  ++E L  R    ++K+     
Sbjct: 118 RSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   ++     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 178 VFGLDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYML 218


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 15/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+AL+  I ++L+++ F+      G   +E  +    D ++LDL L  I G +
Sbjct: 4   RILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGIDGIK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +  A+   PV +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R +  
Sbjct: 64  VCKLIS-AESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           HA   +  G++       T++V GHR       + LT  E+ ++  ++ +     ++E  
Sbjct: 123 HAAETLQVGEV-------TIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++  R   + ++++V + +LR K+         I+TV G GY
Sbjct: 176 LEAVWGYRHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGY 220


>gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 236

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 121/236 (51%), Gaps = 20/236 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAAALSAILSRHGFEVTHARSGEEALQALLPDSGAPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV   +R  + +TPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGFEVCGKIR-KRTATPVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119

Query: 118 RS----RGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           R+     GH            +  G +++ L  + V V G  + LT KE+ ++ LL+ R 
Sbjct: 120 RTAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQRP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 GVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 231


>gi|167751597|ref|ZP_02423724.1| hypothetical protein EUBSIR_02598 [Eubacterium siraeum DSM 15702]
 gi|167655405|gb|EDR99534.1| hypothetical protein EUBSIR_02598 [Eubacterium siraeum DSM 15702]
          Length = 233

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+ ++       G   I     +  D ++LDLGL DI G EV
Sbjct: 6   ILVVEDDNSVKNLITTTLKAHDYRYLTAPNGATAILEASSHNPDIVLLDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLNMI 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S+   G L ++  A    +    +HLT  EY+++ LLS      LT      
Sbjct: 125 QNETAAEASVFTNGQLRIDYAAGCAYLGDDELHLTPIEYKLLCLLSRNIGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    + ++  + VF+  LRKKL   A    YI+T  G GY
Sbjct: 185 NIWGSSWDNDIASLRVFMATLRKKLEKDADSPQYIQTHIGVGY 227


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ + +L    + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC
           796-83]
          Length = 219

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   +    + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 219


>gi|115351289|ref|YP_773128.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|172060316|ref|YP_001807968.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115281277|gb|ABI86794.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|171992833|gb|ACB63752.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 241

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 133/238 (55%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L +  F V V   G+  +   + +E   +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDNYEFTVTVVRRGDLAVAAVREHEPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R A  + PV IL+  + + D+V GL++GADDY++KP     LVAR RA++R    
Sbjct: 69  VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRARP 127

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A   ++ G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AATETRAAAPDALIFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K + + ++  L+ E + V V   GE+ + L    +++ +ILDL +  + G 
Sbjct: 4   IRILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DKV GL  GADDYI+KPF+  E++AR+++++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122

Query: 119 ---SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S G +  ++ I   DL+++L    + + G  + LT KE+++++ L+       TK  
Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++++     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGY 228


>gi|255533329|ref|YP_003093701.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346313|gb|ACU05639.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 234

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+ED+  L  +I+L L+ E + V+    G+  +++ K   F+ IILD+ L ++ GF
Sbjct: 5   LRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R+     P+  L+  ++ ED+V GL+ GADDY+ KPFN EEL+ R+  +V+RS 
Sbjct: 65  QVCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKRSM 124

Query: 121 GHAQSL-----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A  L        GD ++  ++  + +  G  + LT KE  +++LL  RKN  +++E  
Sbjct: 125 -KADDLKEINSYKIGDKTIYFNSFELKQDDGVIVPLTKKETMLLKLLIERKNEAVSREQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  +++    P  + ID FI   RK          Y  ++ G GY
Sbjct: 184 LETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPVYFHSIRGVGY 228


>gi|109453258|gb|ABG34109.1| PhoP [Salmonella enterica subsp. enterica]
          Length = 213

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHPLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
           regulates genes involved in folding/degrading
           periplasmic proteins OmpR family protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
 gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 230

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYID-SSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQYH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       ++    L ++   +     G  + LTG E+ ++ LL+      +++E   
Sbjct: 121 SEQQADIGTPILEIDKLQLSPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   R  P  + ID+ I  LR+KL N      + +T+ GRGY++
Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLM 226


>gi|330808062|ref|YP_004352524.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376170|gb|AEA67520.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 223

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSTGLTVDVLHDGVAADLALSSEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGGLVYDLDTRRFTLDDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHAVAIVTFRGLGYLL 218


>gi|325522087|gb|EGD00757.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 153

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L     FD I+LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHENFDLIVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV +L+   ++EDKV GL+ GADDY+ KPF   E +ARIR+++RRS 
Sbjct: 61  EVLKRLREQK-QTPVLLLTAREAVEDKVAGLELGADDYLPKPFAYAEFLARIRSLLRRSP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
            +A+ +++  DL V+L  + V     RI LT +E
Sbjct: 120 RNARDMLLIADLEVDLIKRRVRRGDTRIDLTAQE 153


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  LA  +   L+   + V+  + G   ++L + ++ D ++LD  L  + G E
Sbjct: 12  KILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR +  +TPV +L+  S   D+V GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 72  VLRRLRQSS-ATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRRAEL 130

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R  A   +  G+L +N     V + G  + L+  E+ +++LL        ++
Sbjct: 131 IKLTISADRRVASEELCLGNLRLNPQTHEVTLDGALLDLSPTEFALLQLLLRSPGRAFSR 190

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  L+ G      + +D  + +LRKKL       + IET+WG GY L   A
Sbjct: 191 SYLIETLWSGTYIGGDRSVDNVVLRLRKKLGKLG---DSIETIWGIGYRLHNGA 241


>gi|293395031|ref|ZP_06639318.1| response regulator protein OmpR [Serratia odorifera DSM 4582]
 gi|291422438|gb|EFE95680.1| response regulator protein OmpR [Serratia odorifera DSM 4582]
          Length = 226

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E FN  +   G+ G+E     E+ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLTAEGFNASLVLTGKAGVEGALSGEYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRDVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               ++     +V G+L++N   ++ E +G    LT  E+ ++ELL LR    +  +  L
Sbjct: 120 EQPAAVDDDAPLVLGELALNPSTRSSEWRGQGFDLTASEFNLLELL-LRAPERVVSKDEL 178

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    GR  E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 179 SEKGLGRPREAYDRSVDVHISNIRQKLAALTGNTLSIETVRSIGYRIR 226


>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 813

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL IEDD++LA  +  +L  +++ V +   GE G  L     +D I+LD  L  + G 
Sbjct: 1   MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60

Query: 61  EVLRALRV-------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           E+   LR            TP+ +++G+ +   KV GL +GADDY+ KP + EEL+ARIR
Sbjct: 61  ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR  G    ++  G L +  ++  V     +I L  KEY+++EL         +   
Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ L+     P    +   I  LR+KL   AG  + +ET++  GY L++
Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQ-AGVPDPLETIYKMGYRLKK 229



 Score = 44.3 bits (103), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 24/123 (19%)

Query: 35  DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94
           +GIELC+    D                LR  R+     PV +LS  + +E   RG  +G
Sbjct: 575 NGIELCQVIRND----------------LRWNRL-----PVILLSVHTDLETVQRGFMAG 613

Query: 95  ADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS-VNLDAKTVEVQGHRIHLTGK 153
           ADD++SKP    EL+ R+R+ +++ +     +I   +L+ V+L  K +E     IHL  +
Sbjct: 614 ADDFLSKPVVASELLIRVRSRLKQRK--MWKIIEYDELTGVSLRRKALEDLTRAIHLAQR 671

Query: 154 EYQ 156
           + Q
Sbjct: 672 QGQ 674


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+    + D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDYI KPF+ +EL ARI  I+RR   G
Sbjct: 88  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 SATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + +E+ +    + I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLRE 223
                +  I++ +I  LRKK     +++ +G +      IET  G GY++RE
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIRE 240


>gi|225848698|ref|YP_002728861.1| two-component response regulator [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644366|gb|ACN99416.1| two-component response regulator [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 223

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 130/228 (57%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI----ELCKFYEFDAIILDLGLTD 56
           +++++IEDDK LA  +   L    FN+ V +  ED +    EL K   +D +ILDL L  
Sbjct: 2   IKVIMIEDDKELAELLTQYLAK--FNISVKNF-EDPVKALQELEKNKNYDIMILDLSLPQ 58

Query: 57  IPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           + G EV +  +VAK    P+ I S  S   DK+  L+ GADDY++KP+N  ELVARI+A+
Sbjct: 59  MDGIEVCK--KVAKEEDIPIIISSARSDDTDKIVALEVGADDYLAKPYNPRELVARIQAV 116

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR     ++ IV G+  ++ +  T++  G  ++LT  E++++ +L   K   LT++  L
Sbjct: 117 LRRKEKKPKT-IVCGEFELDEEGFTIKKNGEPLNLTSAEFELLSMLIKNKGRVLTRDYIL 175

Query: 176 N---HL-YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   HL YD  D    + +DV I ++RKK+ +      YI +V G GY
Sbjct: 176 DNTIHLNYDSID----RTVDVIIGRIRKKIGDDPKNPKYIISVRGLGY 219


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +G    ++  G L +N D+  V+ V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGY 224


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   ++  L+ + +       GE+G+       +D IILD+ L  I G E
Sbjct: 4   KILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKINGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  + S P+ +L+      DK+ GL+ GADDY++KPFN  EL AR++AI RR   
Sbjct: 64  VCRQVR-EQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S       +   +L++N + +TV V G   +LT KE+ ++E+L   +    ++E  L  
Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      +++ +DV I +LR+KL         I T WG GY
Sbjct: 183 VWKYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGY 224


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V     GE+G+ +      D +ILDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 63  VCREIRKTS-NVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    + + IV G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY ++
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIK 230


>gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 224

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   +    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 227

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD+ L   +   L+ E   V + TD G++ +      ++D +ILD  ++ + G
Sbjct: 1   MRILLLEDDRQLGPWVAGGLREEGHVVDHFTD-GKEALIAAMGQDYDVLILDRMVSGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL++LR ++  TP   L+ +  ++ +V G  +G DDY++KPF   EL AR+ A+ RR 
Sbjct: 60  LSVLKSLRASEDPTPALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALGRRR 119

Query: 120 RGHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +  S I       G LS++L A+  E QG  I L  KE++++E    R    +T+ M 
Sbjct: 120 DSNGTSTIEPTTLRYGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTRTML 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D   +P   +++  I +LR K+         I T  G GYV 
Sbjct: 180 LEQVWDMSFDPTTSVVETHISRLRSKIDKPF-DDELIRTRRGEGYVF 225


>gi|187776724|ref|ZP_02993197.1| hypothetical protein CLOSPO_00239 [Clostridium sporogenes ATCC
           15579]
 gi|187775383|gb|EDU39185.1| hypothetical protein CLOSPO_00239 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   L ++ F    TD G + I L   Y+ D IILDLGL D+ G EV
Sbjct: 7   ILVVEDDRPIRNFITASLAAQGFKYIETDKGNEAIALSMSYKPDLIILDLGLPDMDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           ++ +R    + P+ I+S   +   KV  L  GADDY++KPF   EL+AR+R  +R +   
Sbjct: 67  VKKVREWS-NIPIIIVSARENERQKVEALDQGADDYLTKPFGIGELLARVRVALRHAITD 125

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G  Q+  +    +L V+ + + V +    IHLT  EY+++ LL       LT    ++ 
Sbjct: 126 KGGNQNRDIFKVKNLIVDFNKRRVVINNEEIHLTPIEYKIMALLCKYPGKVLTHNFIIHD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + + VF+  LR+K+        YI T  G GY L
Sbjct: 186 IWGSAIGNETQSLRVFMASLRRKIEKNPAQPEYIYTEVGVGYRL 229


>gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 231

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L+  + + L+ E + V     G   +   + +  DA++LD+ L D+ G E
Sbjct: 7   RILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR   
Sbjct: 67  VLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 126

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++V GDL +N +++ V   G  I LT  E++++          L+K   L+ +
Sbjct: 127 STIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDRV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  ++++++  LRKK+   AG    I T+ G GYVLR
Sbjct: 187 WNYDFGGQANVVELYVSYLRKKID--AGRPAMIHTMRGAGYVLR 228


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 127/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I   E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIR-KDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +V     + +DA + +V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL+   GG+ + +ETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLN---GGEEWQLETVWGVGY 223


>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 239

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++++ G       L +N  ++ V +   ++ LT +E+ +    +       ++   L
Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGY 229


>gi|307329139|ref|ZP_07608305.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885169|gb|EFN16189.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 221

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 127/219 (57%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+AL  S+   LK+E + V +T  G +G+ L + ++FD I+LD+ L  + G+
Sbjct: 1   MRILVIEDDEALGASLTWGLKAEGYVVCLTADGAEGLWLAQEHDFDLIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   LR A   TP+ +L+ M +  D+  GL  GADDY++KPF+   L+A +RA++RRS 
Sbjct: 61  QICARLREAGKWTPILMLTAMDAPLDQAEGLDLGADDYLTKPFSYPVLLAHLRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + + +G+L+++     V   G  + LT  E  ++E L   +  T++K   L H +D
Sbjct: 121 RERPAQLRSGELTLDPATHAVHFAGRPLALTPGEASVLEYLLRAEGRTVSKAELLEHCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +  +++V I  LR+K        + IETV GRGY
Sbjct: 181 MASRADPAVVEVRIHHLRRKTD-----ASVIETVRGRGY 214


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ + +   ++ D +ILD+ +    G EV
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  + + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RRS   
Sbjct: 66  CQQVR-EENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I    + ++    TV+V G  I LT  E+ ++ LL+       + E    
Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       K + V I  LR+KL     G+  I TVWG GY
Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V V   G + +E  K+ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALE--KWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G+L +    + + V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|77460156|ref|YP_349663.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384159|gb|ABA75672.1| two-component system response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++   V   +       + K  EFD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVNTASKARAILKVAEFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR   +  PV IL+   S+ D+V GLQSGADDY+ KPF+  EL AR++ ++RR  
Sbjct: 61  KLLQQLRQQGLEIPVLILTARDSVTDRVDGLQSGADDYLLKPFDLRELFARLQTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +  ++   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGALTYDPSSRETTLAGRPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR KL     GK  +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRSKL-----GKGIVETVRGLGYRL 216


>gi|332365635|gb|EGJ43394.1| two component response regulator [Streptococcus sanguinis SK355]
          Length = 225

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/222 (37%), Positives = 133/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L  S+  +LK E+F+V     GE+ +E  +  ++D IILD+ +  + GF
Sbjct: 1   MKLLLVEDEADLNRSLTKLLKKEHFSVDSAFDGEEALEFLEMLDYDLIILDIMMPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R A     V +L+   S+EDK+RGL  GADDY+ KPF  EEL+AR+RA++RR +
Sbjct: 61  AFLEKIRQAGKQVIVLVLTARDSLEDKIRGLDLGADDYLVKPFEFEELLARLRALLRRQQ 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I  G++ ++L  K V      + LT KEY+++E L+  ++  L++E   +H++
Sbjct: 121 RELVSQKIDLGEIVLDLTKKAVLKDDQVLELTAKEYEVLEYLARNQDHILSREQIRDHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E E  IIDV I  +R+K+ +    ++ I T  G GYV+
Sbjct: 181 DFDYEGESNIIDVLIKNIRRKI-DQDKKQSIIHTKRGVGYVI 221


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED++ +A  +++ L+ E F     + G    E     ++D ++LD+ L D+ G EV
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R  RV +IS  P+ +L+    +EDKV GL  GADDYI+KPF  +EL+AR+RA +R  + 
Sbjct: 91  CR--RVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKA 148

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      + ++   DL +      V V+G  + LT KEY ++E +   K   LT++  L 
Sbjct: 149 NEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQ 208

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  ++DV+I  LR K+      K YI TV G GY ++
Sbjct: 209 EVWGYDYVGDTNVVDVYIRYLRAKIDERFDDK-YIYTVRGVGYAIK 253


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RIL+ +DDK +   ++  L+ E   +Y+ D   +G E LC F +  ++ +ILDL +  +
Sbjct: 4   IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++R
Sbjct: 61  DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +    ++ +    L+++    TV   G  I+LTGKE ++++  +       T
Sbjct: 120 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           K     +++D     +   + V I KLRKK+   +    +I+TVWG GY
Sbjct: 180 KTQLFRNVWDDNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  +   PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                L    I  GDL +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  A+G   YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLG-ASG--EYIKTIYGVGYKL 222


>gi|124267939|ref|YP_001021943.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
 gi|124260714|gb|ABM95708.1| two-component system response regulator [Methylibium petroleiphilum
           PM1]
          Length = 225

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 113/224 (50%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD+ L   +   L+S  F V + TD G           +DAI+LDLGL    G
Sbjct: 1   MRILIVEDDRLLGDGLAAGLRSLGFAVDWFTD-GAQADAALSHTPYDAIVLDLGLPGRDG 59

Query: 60  FEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              L   R      STPV +L+    I+ ++ GL +GADDY+ KP    EL AR+RA++R
Sbjct: 60  LAWLARWRGPGPLQSTPVLVLTARDGIDHRIAGLDTGADDYLIKPIETTELAARLRAVLR 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G  Q L   G LS    AK V  +G  + LT +E  ++ELL       L K +    
Sbjct: 120 RSQGRPQPLWQHGALSYQPAAKAVLWRGKPVVLTARECALLELLLANPQRVLPKSLITEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   ++V I  LR+K+         + TV G GY L
Sbjct: 180 LYSFEQEIESNALEVHIHHLRRKID-----PKLVRTVRGMGYAL 218


>gi|332976592|gb|EGK13433.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 235

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/226 (38%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L  S+  +L+ E F V     G++G+ L +   +D I+LD+ L +I G 
Sbjct: 12  MKILLIEDDLPLLESLRRILEKE-FEVETAATGDNGLFLAEQNIYDLIVLDIMLPEINGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  +I  PV +L+   S+EDKVRGL  GADDY+ KPF  +EL+ARIRA++RR  
Sbjct: 71  DILTTLRKKEIEVPVLLLTAKDSVEDKVRGLDRGADDYLVKPFEVQELLARIRALLRRRG 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G + ++L  +   V G  + LT KE+ ++E L       LTKE   + ++
Sbjct: 131 AFKPDGILRYGAIRLHLKKQEGYVNGFPLQLTEKEFLLLEFLVQNAKQILTKEQLYDRVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  + I++++I  LRKKLS A G    I T+ G GY+L + +
Sbjct: 191 GFDSLTSLSIVELYIHYLRKKLS-AHGLSGVIHTIRGVGYMLEDRS 235


>gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 254

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ + F   V     D  ++ +  +   F  I+LD  L    
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGF---VVKTAHDATQMDRLLQRELFSLIVLDFMLPVED 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR + I  P+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR
Sbjct: 79  GLSICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRR 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT+
Sbjct: 139 QVREVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTR 198

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 199 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEENPARARYIQTVWGVGYVF 248


>gi|170720246|ref|YP_001747934.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758249|gb|ACA71565.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 223

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHVQLAESVAQALKSHGLTVDVLHDGVAADLALASEEYAVAVLDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFALGEDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GQSVAIVTFRGLGYLL 218


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE G+      + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQT 123

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       A  LI+ G+L +  +   V  Q  R+ LT KE++++  L   K   LT
Sbjct: 124 LSVQPEETEEPDAGELII-GELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++ LN +++     + +I+DV I  LR K+        YI+T+ G GY + E
Sbjct: 183 RDLLLNAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEE 235


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 129/224 (57%), Gaps = 10/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   +   LK   +       G+  ++L      D IILDL L  + G+E
Sbjct: 5   RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  K +   P+ +L+      D V GL+ GADDY+ KPF+  ELVAR+  ++RR+
Sbjct: 65  VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRT 124

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN-- 176
           R   ++  +T GDL ++++ + V ++G+ + L+  E++++ELL+ R   T++++  L   
Sbjct: 125 RMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRI 184

Query: 177 -HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +LY G    + + +DV I +LRKKL +       I+T+ GRGY
Sbjct: 185 WNLYGG----DTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGY 224


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  LK ++F V   +  E      +   +  ++LDL L    G  
Sbjct: 7   KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY++KPFN  EL+ARIRA++RR   
Sbjct: 67  ICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQAK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H       +++++  G  ++NL  + +   G+ I LT  E+ +++ L       L+++  
Sbjct: 127 HIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVF 233


>gi|260589879|ref|ZP_05855792.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260539686|gb|EEX20255.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 243

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+EDDK +   +  +LK  ++NV     G + IE     ++D ++LDL L D+PG 
Sbjct: 21  INILLVEDDKEICFILTELLKRNHYNVSAYHNGIEAIEALSSKKYDLMLLDLMLPDLPGE 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+    S PV ++S  +  E ++  L+SGADDYI+KPF  EE++ARI +++RR  
Sbjct: 81  KILFHLKKHNNSIPVIVISAKNQPEIRINLLRSGADDYITKPFYHEEVLARIESVLRRCS 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+     D+ +N+D   V V    + LT  EY +++LL      T TKE  L  L  
Sbjct: 141 ESPQTEYSFKDIRINVDDHKVLVNNTELSLTTTEYNLLQLLIKHPKQTFTKES-LYQLIW 199

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G+D   +   ++V I KLRKKL +      YI+TVWG GY L 
Sbjct: 200 GKDYISDDNTLNVHISKLRKKLEHIGNQAPYIDTVWGIGYKLH 242


>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
           Et1/99]
 gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
          Length = 233

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q        S  +  D L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQQHQHDNSSPTLEVDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   R  P  + ID+ I  LR+KL        + +T+ GRGY++
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDAHPWFKTLRGRGYLM 229


>gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 231

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   I+ ML+  +  V     G+D  E   + E+D +ILD  +    G 
Sbjct: 7   MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    LR +     + +L+   S+ED+V GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 67  DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 126

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ ++
Sbjct: 127 QKIQHEVDEIGGFRLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ID ++  LRKKL  A+ G+  I+T+ G GY L
Sbjct: 187 GLESDVSSNNIDSYMKMLRKKLDAASEGEA-IKTIRGVGYKL 227


>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
 gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +  L+IED+  +A  +   L+   F V V   G++G+   +      +ILDLGL  + G 
Sbjct: 10  LHALVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGV 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    +  V + +    + D V GL  GADDY++KPF   EL+ARI A++RR R
Sbjct: 70  EVCRQLRTFTNAYIVMVTARADEV-DTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPR 128

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H +++   G+L+++   + V+V+   + LT  E+ ++E L+ R     ++E  
Sbjct: 129 PTPTGESHPRTI---GELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      +  +++V +  LR+KL ++A    +I TV G GY
Sbjct: 186 LTEIWGPDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGY 230


>gi|146284354|ref|YP_001174507.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
 gi|145572559|gb|ABP81665.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
          Length = 271

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYE-FDAIILDLGLTDI 57
           MRILL+ED   LA S+   L+   + V   DL  DGI  +L    E +   ILD+GL  +
Sbjct: 49  MRILLVEDHPQLAESVAQALRGAGWTV---DLLHDGIAADLALASEDYALAILDVGLPRL 105

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL  LR    + PV +L+    + D+V GL  GADDY++KPF   EL AR++A++R
Sbjct: 106 DGFQVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLR 165

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  +     G L  +LDA+   +    + LT +E  ++E L  R    ++K+     
Sbjct: 166 RSVGGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQ 225

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   ++     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 226 VFGLDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYML 266


>gi|91785765|ref|YP_560971.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|187925893|ref|YP_001897535.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296157565|ref|ZP_06840400.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307731487|ref|YP_003908711.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|91689719|gb|ABE32919.1| Two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|187717087|gb|ACD18311.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295892337|gb|EFG72120.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307586022|gb|ADN59420.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV IL+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL +    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLESC---RVEIVTVRGFGYLLQE 223


>gi|27378858|ref|NP_770387.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27352007|dbj|BAC49012.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L+  +   L +  +   +     +  E      + A+ILDLGL D  G 
Sbjct: 1   MRLLIVEDNAELSRLVAAGLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR      PV +L+    ++D+V GL+SGADDY++KPF  EELVAR+ AI+RR  
Sbjct: 61  SVLRELRRQMEPLPVLVLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L  + +++ + +      ++ +E  ++E+L  R+   + K+   +H++ 
Sbjct: 121 QLLGRSLRLANLVYDTESRQIFIDDQPRIISAREASVLEILLRRQGRVVPKKNVEDHIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     ++V++ +LRK+L+   G K  I T+ G GY++ E
Sbjct: 181 LEGEVASNAVEVYVSRLRKQLTE-HGAKVVIHTIRGVGYLMAE 222


>gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
          Length = 234

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 120/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E ++V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLRIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  +A   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|319639384|ref|ZP_07994134.1| BasR protein [Neisseria mucosa C102]
 gi|317399279|gb|EFV79950.1| BasR protein [Neisseria mucosa C102]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G +         +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAQAVSANLKDAGYAVDWVSRGSEVAAAVAAQAYDLLLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R    + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+L+  G +++N      EV G    + L+ KE+ +++ L LR    L++    + +
Sbjct: 121 GQAQTLLTNGIITLNPSTHQAEVVGQEQAVMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y   +E E   +D  I  LRKKL     GK  I+ V G G+++ +N
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221


>gi|170780901|ref|YP_001709233.1| putative turgor pressure regulator [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155469|emb|CAQ00578.1| putative turgor pressure regulator [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 234

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +DD+ +  ++ + L S  +++   + G   +      + D  ++DLG+  + G 
Sbjct: 1   MKILIADDDQQILRALRITLTSLGYDIVTAEDGAAAVRAAVAEKPDLYMIDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV++ALR+   + P+ ++SG S   DKV  L +GADDY++KPF+ +EL+ARIRA+ RR+ 
Sbjct: 61  EVIQALRLWS-TAPILVVSGRSGAADKVEALDAGADDYVTKPFSIDELLARIRALGRRAA 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG + S     D++V+L A+ V     R+ LT  E+Q++ELL    +  ++++  L
Sbjct: 120 ADEDRGASVSF---ADVTVDLAARVVTRGDQRVRLTPTEWQVLELLVRNPDRLVSRQALL 176

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + +++ +LRKKL        ++ T  G GY
Sbjct: 177 TEIWGPTHVNDSGYLRLYVAQLRKKLEPDPAHPRHLLTDPGMGY 220


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 128/228 (56%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   +   L+ E + V  T  G D +E  +    DAIILDL L  + G 
Sbjct: 1   MTILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR    ++  P+ +L+  S   D V GL+ GADDYI+KPF+   L+AR++A+++R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    G +   IV G+L ++    +V V+G  + L+  E+ ++  L+       +++  +
Sbjct: 121 THPPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQII 180

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +  G D P   + +DV I  +RKKL +A   ++YI+TV G GY L+
Sbjct: 181 DAV-KGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQ 224


>gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
 gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
          Length = 268

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MRIL++ED+      +   L    F   VTDL   G DG  +     +D IILD+ L   
Sbjct: 43  MRILVVEDEHKTGEYLRKGLTEAGF---VTDLVHDGLDGQHMALAEHYDLIILDVMLPRA 99

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++++ ALR A   TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++R
Sbjct: 100 SGWQIIAALREAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLR 159

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R     ++   +L +++  + V+  G +I LT KE+ ++ELL  R+   L++ +  + 
Sbjct: 160 RGRTREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQ 219

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   + +  +I+V + +LR K+ +    K  I TV G GYVL
Sbjct: 220 VWDMNFDSDTNVIEVAMRRLRAKIDDPFEPK-LIHTVRGMGYVL 262


>gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 224

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S ++  GDL ++           RI LT KE+ ++ LL       ++    ++ ++
Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 236

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +     +  D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I  GDL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+         I+T  G GYVLR   K
Sbjct: 189 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 235


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 ASVDNQESDENKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 267

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L+  + + L+ E + V     G   +++ + +  DA++LD+ L D+ G E
Sbjct: 43  RILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDGLE 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR   
Sbjct: 103 VLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 162

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S    +V GDL +N +++ V   G  + LT  E++++          L+K   L+ +
Sbjct: 163 STLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDRV 222

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  ++++++  LR+K+    G +  I T+ G GYVLR
Sbjct: 223 WNYDFGGQANVVELYVSYLRRKID--VGRQPMIHTMRGAGYVLR 264


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A      L++  F V +   G +G+ L +  E+  ++LD+ L  I GFE
Sbjct: 3   KILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + R +R +K + PV +++      DK+RGL  GADDY+ KPF+  ELVAR RA ++    
Sbjct: 63  ICREVRKSK-NVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121

Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S G  + + V G L +   ++ V V G  + L  +EY+++  L+   +   ++E 
Sbjct: 122 LSSGASSGAERPIEVKG-LKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRET 180

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++ G D P +   + V + ++R K+        YIETVWG GY
Sbjct: 181 LFERIW-GEDHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGY 226


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K    D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEGP-DVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGKSG---EYIKTIYGVGYKL 221


>gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
 gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L+++++  +    G   +      + D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQALLESVSQKPDIMLLDLGLPDMDGIEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ +EL+AR+R  +RR    
Sbjct: 66  IKKVR-SWSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTLRRLQYM 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    Q+  V GDL ++  +  V ++   +HLT  EY+++ LL+      LT       +
Sbjct: 125 SVSQEQTEFVNGDLRIDYVSGCVYLKEKELHLTSTEYKLLSLLAKNVGKVLTHTYITREI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + +V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 WGSAWDNDVASLRVFMATLRKKIEENPSQPQYIQTHIGIGY 225


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   + L L+ E   V     GE  + L +    D ++LDL L  + G EV
Sbjct: 4   ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R L+  +  TPV +L+  S   D++ GL  GADDY+ KPF+  ELVAR+ A++RR    
Sbjct: 64  CRRLQSDR-RTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQPQ 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    +  I  G L V+   + V+V G  I LT +E+ ++  L+  +    T++  + 
Sbjct: 123 PDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   + V I +LR+K+ +      Y++TVWG GY L
Sbjct: 183 LVWGYTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227


>gi|77457581|ref|YP_347086.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77381584|gb|ABA73097.1| two component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLPLAESVAQALKSTGLTVDVLHDGVAADLALGSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L+ +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLAYDLDTRRFTLGDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I++++ +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYVHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 12/223 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   +   L+ E +NVY T  G DGIEL K  +F  +ILDL L DI G EV
Sbjct: 4   ILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLMLPDIDGEEV 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
            R LR  +IS   + IL+   +++D++ GL  GAD+Y+ KP +  EL AR+ A+ RR  +
Sbjct: 64  CRILR--RISDVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
               +    G+L +  D + V ++  +I LT  E+ ++  L L K   L++E  +  +  
Sbjct: 122 DENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFG 181

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +DG D    + IDV I  +RKK+        YI TV   GY
Sbjct: 182 LDFDGFD----RTIDVHIKNIRKKIEEDTKKPKYIITVTKLGY 220


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D ++LD+ L  + GF V
Sbjct: 13  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I +KV GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 73  CRRLR-AESCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L    ++V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 5   RILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 65  ICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQEA 124

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++L++       G L+++  A+   V    I LT +E+ ++   +       ++   L
Sbjct: 125 MGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++  + +     ++  I +LR K+ +      +I TVWG GY
Sbjct: 185 DKVWGYQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGY 228


>gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22]
 gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322]
 gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8]
 gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG]
 gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11]
 gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis]
 gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22]
 gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322]
 gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8]
 gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG]
 gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11]
 gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62]
 gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + GFE+
Sbjct: 5   VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R +  
Sbjct: 65  CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   L+   +++V+  A  V V  + +  T KEY+++  L    N    KE     
Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  D  EV  + V I ++R+KL  A    + IET+WG GY
Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +K+E +       G + + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  IEVIKEVR-KDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +  +    ++  G L++N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENNVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGY 224


>gi|330990821|ref|ZP_08314777.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
 gi|329762261|gb|EGG78749.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp.
           SXCC-1]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED+  L  +++  +  +   V + T L ED        ++D ++LDLGL D  G
Sbjct: 1   MRILIVEDEYDLGVAVQERVGLDGHAVDWFTTL-EDARAAMATVDYDFMLLDLGLPDGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++LR +R       + I +    I D++ GL  GADDYI KP++  ELVARI A+ RR 
Sbjct: 60  RDLLREVRRTSSDIAILITTAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRY 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R HA   +  G+++++ + ++V   G R+ LT +E+ ++ELLS       +++    
Sbjct: 120 ASPRRHAHCRV--GEITIDRENRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDT 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            LY    + +   ++VFI +LR+K+ N       I T+ GRGY L  +A+D
Sbjct: 178 ALYALDRDVDSNTVEVFISRLRRKVGNTV-----IRTIRGRGYCL--DARD 221


>gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 222

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 1/218 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ LA +++  L+SE F+V V   G  G+ +   +++D I+LD+ L  + G+ V 
Sbjct: 1   MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR A   + + +L+      D+   L +GADD++SKPF+   LVAR+RA+ RR+   A
Sbjct: 61  ARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGRRA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +  GDL V+         G  I LT +E+ ++E L+ R    + K   L  ++D   
Sbjct: 121 PRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDSAF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +  +++V +  +R+K+ +A  G++ +ETV G GY L
Sbjct: 181 DGDPNVVEVHVSAVRRKI-DAPFGRSALETVRGAGYRL 217


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L + ++ +L  E F+V   + G+ G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALN-DEIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR    +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-ENWTTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQHQ 121

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      +I   D+ V    +    QG  + LT  E+ ++   +     TLTKEM    +
Sbjct: 122 SVHKPSDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLGHFAQNPGETLTKEMLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERVDGKPRIKTLRGRGYLM 224


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K+        YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGY 227


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ I +L    +   ++LD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKIVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+   G  ++LT  E+ +  LL+   N   + +  
Sbjct: 120 ENSVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   +    G +  ++      D ++LD+ +    GF V
Sbjct: 4   VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R A  + P+  L+   + EDKV+GL  G DDYI KPF  +ELVARI A++RRS  +
Sbjct: 64  CQSIR-AMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  ++ G + ++  A+ V V G  I LT KE++++ L         ++E  L  +
Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D       + +D  I  LR KL   A   ++I+TVWG GY
Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKDAA--SHIQTVWGVGY 221


>gi|284039402|ref|YP_003389332.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818695|gb|ADB40533.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED+ AL  +++  L+SE + V       +  E    Y++D +++DL L D  G 
Sbjct: 1   MKILLIEDEPALQTAVQHYLESEGYAVTTATTFAEAAEKINDYDYDCVVVDLMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++RAL+  + +  + +++   ++ DK+ GL +GADDY++KPF+  EL AR+R+++RR  
Sbjct: 61  DLVRALKQRQSTAGIIVVTAKDALADKLTGLDAGADDYLTKPFHLPELNARLRSVLRRRL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            + Q+ +  G L++  D + V + G  I LTGKEY+++  L    N  L+K     H++ 
Sbjct: 121 FNGQAQLTAGSLTLWPDQQRVTIDGSDIKLTGKEYELLLFLVTNANRLLSKSAIAEHVWG 180

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D  +  + +   +  LR+KL   AG  +YI+T +G GY+ 
Sbjct: 181 DAMDAADSHEFLYTHVKNLRRKLIT-AGCPDYIQTRYGAGYIF 222


>gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
 gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
          Length = 260

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++   I  +L SE  +    D G D + +     +  IILDL + D+ GF+
Sbjct: 27  RILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLMMDDMDGFQ 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+  LR   I TP+ +LSG  +  DKV  L  GADDYI+KPF+   L A+++A +RRS  
Sbjct: 87  VIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSSL 146

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             GHA  LI  G      D   +  QG  I L+GKE  +++     +N  LTK+    ++
Sbjct: 147 LSGHANELI-AGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  +   I V I +LR K+ ++ G   Y++ + G GY
Sbjct: 206 WND-DFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGY 245


>gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 262

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 128/245 (52%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ +++  + +  K E ++      G + +E+       +D + LDL L  + 
Sbjct: 19  MKLLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLPGMD 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 79  GMQVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 138

Query: 119 SR-------GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163
           +          A+ L       +VT +  +N   +   + GH+I  LT KE+ +++ L+ 
Sbjct: 139 AELGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQ 198

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 199 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 256

Query: 224 NAKDE 228
           +  D+
Sbjct: 257 SGADQ 261


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+   + V   + GE  + L    + D ++LD+ L  + GF V
Sbjct: 26  VLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 86  CRRLR-AESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V  +G RI LT  E+ ++ELL       + +
Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|302866216|ref|YP_003834853.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502774|ref|YP_004081661.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302569075|gb|ADL45277.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409393|gb|ADU07510.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 218

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L +E F V V   G DG++  +  E+DA+ILD+ L  + G+
Sbjct: 1   MRLLVVEDETRLAAALRRGLSAEGFVVDVAATGPDGLDAARHGEYDAMILDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  +   PV +LS      D+  GL  GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  EVVRRLRAEQRWLPVLMLSAKDGEYDQADGLDCGADDYLTKPFSYVVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++   + V      + LT +EY +++ L  R    ++K   L+H++D
Sbjct: 121 PRRPTVLTVGDLRLDPARRRVTRADTEVVLTSREYALLDYLMRRPGEVVSKTELLDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V++  LR+K+     G+  +ETV G GY L
Sbjct: 181 ASVDTAPNAVEVYVGYLRRKI-----GRERLETVRGAGYRL 216


>gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  ++  I+L L+ E + V     G  G+E       D IILD+ L  + G E
Sbjct: 5   KILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR LR      PV +L+    + DKV GL  GADDY++KPF  EEL+ARIR   +  R 
Sbjct: 65  ILRRLRQVS-EIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H +S +I  G+L ++L   TV      I LT KE+ +++LL +     LT++  L  ++
Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV++  LR K+ +    K +I TV G GY L+
Sbjct: 184 GYNYAGDTNIVDVYVRYLRIKIDDRYHQK-FIHTVRGVGYQLK 225


>gi|240145280|ref|ZP_04743881.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82]
 gi|253578070|ref|ZP_04855342.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850388|gb|EES78346.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA]
 gi|257202635|gb|EEV00920.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82]
          Length = 233

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD +L   ++  LK   F+V +V  + E    L +  ++D +ILD+ L D  GF
Sbjct: 4   RILLLEDDVSLIDGLQYSLKKNGFDVDFVRSVQETLTYLSEIEKYDMLILDVTLPDGTGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R      P+  L+        +RGL  G DDYI+KPF   EL +RIRA++RR+ 
Sbjct: 64  EICEKVRKNGSQIPIIFLTASDEEVSIIRGLDCGGDDYITKPFKLGELCSRIRALLRRAG 123

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              Q   +++  GD+ ++L    V ++G  + LT  EY++I LL    N  +T+++ L+ 
Sbjct: 124 LSTQGTGAVMECGDIKIDLLGSRVLLKGKILELTAAEYRLICLLVKNANRIITRDIILDE 183

Query: 178 LYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+D   D  +   + V++ +LR+K+        ++ TV G GY  +E
Sbjct: 184 LWDSTGDYVDNNTLSVYVRRLREKIETDPSHPEHLLTVRGFGYQWKE 230


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  + G 
Sbjct: 11  FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGE 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 71  EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 129

Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V  +G+ + LT  E++++  L        T+E  +
Sbjct: 130 RGKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLV 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 190 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 233


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 237

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ +      ++LDL L    G ++
Sbjct: 11  ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLMLPGRDGIQI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +   P+ +L+  S   D VRGL +GADDY+ KPF   ELVAR+RA +R     
Sbjct: 71  CQDIR-RESGVPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAAQ 129

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  L+   N   ++E  L  ++ 
Sbjct: 130 REEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 190 YTNSADTRLVNVHVQRLRSKVERNADHPQMIITVRGIGY 228


>gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 16/228 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  +   I+  L  EN        G +   +     FD IILD+ L D  GF+
Sbjct: 5   KVLLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIMLDDTDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ ++   I  PV  LSG     DK+  L  GADDYI+KPF+   L+A+I+A +RRS  
Sbjct: 65  LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   I      +N+D   +   G  I L+ KE  +++      N   TKE    
Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184

Query: 177 HLYDGRDEPEVKIID-----VFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++        IID     V+I  LRKK+ + +    YI+TVWG GY
Sbjct: 185 KVWNNT------IIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGY 226


>gi|300855471|ref|YP_003780455.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435586|gb|ADK15353.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 220

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DDK +   I+  L+  +  V +T    + I + +F  +D I+LD+ + +I GFE
Sbjct: 3   KILAVDDDKRILKLIKNALELNHHEV-ITLQDPENIPIEEFCGYDLILLDVMMPEIDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + + +R + + +P+  L+  +     V+GL  G DDYISKPF   EL AR+ A +RR +R
Sbjct: 62  LCQKIR-STVDSPIIFLTAKTDESSIVKGLAFGGDDYISKPFGVMELNARVEAYLRRENR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   +V GD++++ D K + V  + I  T  EY + E L+L +    TK+     +YD
Sbjct: 121 GKSTKKLVYGDITIDFDKKEILVNNNVIAFTKNEYNICEFLALNRGKVFTKQAIFEAIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I  +I  +R K          IETVWG GY+ +
Sbjct: 181 LDSDTQFSVITEYIRLIRNKFKEYNCFP--IETVWGVGYMWK 220


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 122/236 (51%), Gaps = 21/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + + L++E F+V +   G D   L    EFD  +LD+ L D+ GFE
Sbjct: 46  RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR +R  + + PV +L+   S  DK+ GL  GADDY+ KPF   ELVAR +A +RR   
Sbjct: 106 LLRTIRTER-TYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164

Query: 119 --SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             SR  A        +I    L +N DA+TV V    +  T  EY ++  L+  +   + 
Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224

Query: 171 KEMFLNHLYD-----GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++D     G +      + V I  LR+KL + A    +I+ +WG GY +
Sbjct: 225 VEELFRAVWDEEFMAGSN----NTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTI 276


>gi|148654779|ref|YP_001274984.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566889|gb|ABQ89034.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD+ LA  I  +L+ E++ V +   G+ G+E      +   I+D  L +  G 
Sbjct: 1   MKVLLIEDDQRLARLIARVLRDEHYQVDMVHDGDTGLEYALRGVYQVAIIDWMLPERDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + RA+R A++ T + +L+    +EDK+ G  SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SICRAVRAARLPTALLLLTARGQVEDKIVGFDSGADDYLVKPFAFEELLARVRALGRRFS 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    + +  GDL ++L   T       + LT  E+ ++E L       L+++  L+H+
Sbjct: 121 LQPDDSNELRVGDLVLDLRHHTARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + + +++DV+I  LR+KL NA+G ++ I TV G GY L
Sbjct: 181 WSYDHDVQPQMVDVYIAYLRRKL-NASGERDPIVTVRGVGYRL 222


>gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus
           faecalis TX1467]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + GFE+
Sbjct: 5   VLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMDGFEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R +  
Sbjct: 65  CRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   L+   +++V+  A  V V  + +  T KEY+++  L    N    KE     
Sbjct: 124 SNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183

Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  D  EV  + V I ++R+KL  A    + IET+WG GY
Sbjct: 184 VWGFDALDT-EVSTVVVHIKRIREKLKKANLSDSPIETLWGSGY 226


>gi|171316609|ref|ZP_02905824.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171098247|gb|EDT43055.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/238 (33%), Positives = 134/238 (56%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L +  F V V   G+  +   + ++   +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDNYEFTVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R A  + PV IL+  + + D+V GL++GADDY++KP     LVAR RA++R    
Sbjct: 69  VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRARP 127

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A + ++ G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AATETRAAAPAALIFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|159898827|ref|YP_001545074.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891866|gb|ABX04946.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 114/208 (54%), Gaps = 2/208 (0%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
           AH ++L L+   F  Y+   G  G+ L + ++   ++LDL L  + G  V + +R    +
Sbjct: 15  AHWMQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTS-N 73

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HAQSLIVTGD 131
           TP+ +++  SS E+++ GL+ GADDY+ KPFN  ELVAR+RA++RRS+   A  ++  G 
Sbjct: 74  TPIIMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLKRGP 133

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           + ++L+  +  V    + L+  +  ++       N  L++E  L  ++ G      + +D
Sbjct: 134 IELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLD 193

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGY 219
             I +LR+++ +      YI TV+G GY
Sbjct: 194 AHIARLRQRIEHDRTNPQYIVTVYGLGY 221


>gi|254387721|ref|ZP_05002959.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064]
 gi|197701446|gb|EDY47258.1| response regulator receiver [Streptomyces clavuligerus ATCC 27064]
          Length = 217

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ +A  +E+ L+ E   V V   GE  +E    Y++DA++LD  L  + G EV 
Sbjct: 1   MVVEDERYMARVLEIGLRREAIAVDVAHDGEAALERLTVYDYDAVVLDRDLPGVHGDEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +   ++   V +L+    + DKV GL  GADDY++KPF+  ELVAR+RA+ RRS    
Sbjct: 61  RRIVAMRLECRVLMLTAAGRLGDKVEGLGLGADDYLAKPFDFPELVARLRALYRRSPMAH 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             ++   DL+ +   + V   G  + LT KE  ++ELL       L+ E  L+  +D   
Sbjct: 121 APVLTFADLAFDTHRRRVLRAGREVRLTPKELAVLELLMRADGGVLSAEHLLDKAWDAYA 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +P    + + +  LR+KL    G    + T    GY L
Sbjct: 181 DPLTNAVRLVVHTLRRKL----GEPRLVHTAISAGYYL 214


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61
           I+++EDD A++  + L L  E + V      ++ ++  +  + D  I+D+ L   + GF+
Sbjct: 6   IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R L+ ++   +TPV ILS      DKV GL+ G+DDY++KPFN  EL+ARI++I RR 
Sbjct: 66  LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125

Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              AQ        I   DL ++ +   V V G+ + LT  E+ ++  L+  +    ++++
Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+
Sbjct: 186 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 239


>gi|66046603|ref|YP_236444.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257310|gb|AAY38406.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970771|gb|EGH70837.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 229

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218


>gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R +    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I T  G GY+L E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDGFEPK-LIHTARGMGYMLDE 223


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +++ L+ + F+V     GE+ +++ +    DA ILD+ +  + GFE
Sbjct: 7   KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++EDK+ GL  GADDY+ KPF+ EE++ R+R I+RR + 
Sbjct: 67  LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++   DL++N +   V   G  + L+  E+ ++  L L     ++K   L++
Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+  K
Sbjct: 187 VWHYDFGGDGNVVESYISYLRRKIDTQE--PQLIQTVRGVGYVLRQPRK 233


>gi|222107155|ref|YP_002547946.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738334|gb|ACM39230.1| two component response regulator [Agrobacterium vitis S4]
          Length = 220

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 111/219 (50%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +I   + +    V      +D     +   +  I+LDL L D  G 
Sbjct: 1   MRVLLVEDDAVLGQAIRDHVGAAGHAVDWMKGLQDAEACTRTVAYGLILLDLRLPDGNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+ LR     TP+ IL+    I D++ GL SGADDY+ KPFN +EL ARI A+ RR  
Sbjct: 61  DFLKRLREHGDVTPIIILTAHDQISDRIEGLNSGADDYLVKPFNLDELTARISAVARRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G L +N   + +      I L+ +E+ +++ L  R    ++K      LY 
Sbjct: 121 AKPNPIIRIGTLEINPAERRIADGADSISLSSREWAVLDALLARPGAVVSKSRIEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E E   ++V++ +LRKK+     GK+ + TV G GY
Sbjct: 181 FGSEIESNTVEVYVSRLRKKI-----GKDRLLTVRGVGY 214


>gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 229

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD  +   +  +++ + +NV     G +G+   +  +F  I+LDL L  + G 
Sbjct: 4   INILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLMLPGMTGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+++ +R  K   P+ ++S     E K+   + GADDY++KPF+ +EL ARI A +RR  
Sbjct: 64  ELIKKIRKTK-KLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYI 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + +  IV  D+ +N +AK V V G  + LT +E+ ++ELL        +K    
Sbjct: 123 DFNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   ++V I  LR KL+ A+  + YIETVWG GY L+
Sbjct: 183 ESVWGDEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKLK 229


>gi|326791727|ref|YP_004309548.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542491|gb|ADZ84350.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL IEDD  LA SI   LK   +N+  ++ G +G EL K   +D +ILD  L  + G 
Sbjct: 1   MRILCIEDDTELAESICFHLKHVGYNIDCSEDGLEGFELVKTNTYDLVILDRMLPSLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L+ +R   +  PV +++ +  I D+V GL SGADDY+ KPF  EEL+AR+ A+ RR S
Sbjct: 61  SLLKRIRALNLQLPVIMVTALDGIGDRVAGLNSGADDYLVKPFAIEELIARVGALSRRPS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      I   D++++L    +        L+ KE  + +      N  LT+E+ L+ ++
Sbjct: 121 QMINTEQIHFADVTLDLLGLCLTGPLRSCSLSKKEGDLADFFLRHPNEPLTRELLLSKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +D +I  LR++L  A G + +I+T+   GY L
Sbjct: 181 GPDTEVEDGNLDNYIHFLRRRL-KAVGSELHIKTLRSIGYTL 221


>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L+ E F+  V   GE G E      +D I+LD+ +  + G +
Sbjct: 3   KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LRA+R  K +TPV +L+      D++ GL+ GADDY+ KP    E+VAR+RAI+RR++ 
Sbjct: 63  ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 121

Query: 122 --HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNH 177
             +AQ + +T G L++  + +  E  G+ + LT  E+ ++E+L       ++K ++ L  
Sbjct: 122 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 181

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  GR      + IDV +  +R+K+   A G++YI+TV+  GY L
Sbjct: 182 L--GRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQL 224


>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
 gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
          Length = 243

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L  E+F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++ V++ G  I++T  EY ++ L++  KN   T E   
Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGY 239


>gi|149921141|ref|ZP_01909599.1| two-component response regulator [Plesiocystis pacifica SIR-1]
 gi|149818028|gb|EDM77487.1| two-component response regulator [Plesiocystis pacifica SIR-1]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIP--GF 60
           +++EDD+ LA  ++L  + E + V  V  + + G  L +  ++ A+ILD+ L D    GF
Sbjct: 1   MVVEDDRNLATGLKLNFELEGYTVDLVHSIRDAGAHLIESGKYAALILDVMLPDNEEGGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R LR A   TPV +L+    I D+VRGL++GADDY+ KPF  +EL+AR+R+++RR  
Sbjct: 61  VLCRKLRDAGDFTPVLMLTARDRISDRVRGLEAGADDYLVKPFELDELLARVRSLLRRRG 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S G A+ + + GD+ ++  A+     G  + LT  EY ++       N  L+++ 
Sbjct: 121 WEQKSSEGPAERVHI-GDVEIDFAARVTARGGEELKLTALEYDLLRYFIENPNRVLSRQE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++   + P  +++D FI +LRK L  +     Y  +V G GY
Sbjct: 180 LQEKVWKLDNYPNSRMVDNFILRLRKHLEPSPKEPRYFVSVRGAGY 225


>gi|153815040|ref|ZP_01967708.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756]
 gi|331088614|ref|ZP_08337525.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847608|gb|EDK24526.1| hypothetical protein RUMTOR_01257 [Ruminococcus torques ATCC 27756]
 gi|330407571|gb|EGG87071.1| hypothetical protein HMPREF1025_01108 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 126/232 (54%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   +  +LK  ++ V   D G+ G+E+ +    D I+LDLGL D+ G  +
Sbjct: 6   VLIIEDEKNIQTFMGKVLKRHDYQVLYADTGKQGLEMIRSRCPDLILLDLGLPDMDGCSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    STP+ ++S  ++  +KV  L  GADDYI+KPF   EL+ARIRA +R    H
Sbjct: 66  IRDVRTWA-STPIIVISARTAEREKVAALDLGADDYITKPFGTSELLARIRASLR----H 120

Query: 123 AQSLIVTG----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +  L+             DL ++   + + ++G+ +HLT  EY+++  L+      +T  
Sbjct: 121 SNRLLTDSTFYIRPYRHKDLILDFSKRLLTIRGNAVHLTPIEYKIVAYLAQNSGKVITYA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L++++    + + KI+ V +  +R+K+        YI T  G GY + E+
Sbjct: 181 SILSNVWGPYADNDNKILRVNMANIRRKIEEDPAQPQYIFTEVGVGYRMAED 232


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++DDK +   + + L +E + +     G + +E  +    D +ILD+ + ++ G 
Sbjct: 3   VRILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLDGL 62

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV +  R+ K ST P+ + S  ++  DK+ GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 63  EVTK--RIRKNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRS 120

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                S    +I  G L ++  +  V+  +G  I LT  E+ ++ LL+   N   + E  
Sbjct: 121 NYTQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  +   +    K + V I  LR+KL  A  G+  I+TVWG GY
Sbjct: 181 FDRCWKMENFVSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGY 225


>gi|282854823|ref|ZP_06264157.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581969|gb|EFB87352.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924507|gb|EFS88338.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967282|gb|EFT11381.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981749|gb|EFT25842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092512|gb|EFT64488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315102919|gb|EFT74895.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328604|gb|EGE70364.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 243

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R +R+ + + P   L+   +I  ++ GL +G DDYI+KPF+ EE++AR+RA++RR  
Sbjct: 78  EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRALLRRAG 137

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++++I  LRKK+    G    I T+ G GYVL+
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGYVLK 240


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++   TV  +G  I LT KE +++   +L      TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++      +   + V I KLRKK+         I+TVWG GY
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGY 234


>gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 245

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 121/239 (50%), Gaps = 25/239 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M++L+IED+K+++  + +  + E ++V       DGIE    +      +D I LDL L 
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+
Sbjct: 58  KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117

Query: 116 VRRSRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160
            RR+   AQ+               I T    +N + +   + G  I  LT KE++++  
Sbjct: 118 QRRAHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGY 234


>gi|194290021|ref|YP_002005928.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|193223856|emb|CAQ69865.1| Putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  LA S+   L    F V     G     L    ++  +ILDLGL  + G 
Sbjct: 1   MRILLAEDNVMLASSLSQALDQAGFTVDCMHDGHSADTLLSTQDYALLILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +   PV IL+   S+ED+VRGL  GADDY++KPF+  EL AR RA++RR+ 
Sbjct: 61  EVLRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + I  G L  +  ++   + G  + LTG+E  ++E+L LR    + K      ++ 
Sbjct: 121 GHDSTQIAFGPLHYDSVSRAFLLHGQLLPLTGRERAVLEVLLLRDGRAVNKGALSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I T+ G GY+L
Sbjct: 181 IDESVNPDAIEIYVHRLRKKLD---GSGVAIVTLRGLGYLL 218


>gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
          Length = 234

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +E  +  E + V     G++ ++L K   +D +ILD+ +    G 
Sbjct: 2   MKILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R    +T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 62  EALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRSMSRRVA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G  S+N+    + +  + I L GKE +M+E L L    +L+ +    H++ 
Sbjct: 122 TFTPNLLRIGQTSLNVGEHEL-ISSNSIRLAGKESKMMEFLMLNAQKSLSTQEIFRHVW- 179

Query: 181 GRDEPE---VKIIDVFICKLRKKL 201
            +DE E      + ++I  LR+KL
Sbjct: 180 SKDEDEDLDEGFVWIYISYLRQKL 203


>gi|312897337|ref|ZP_07756763.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621555|gb|EFQ05089.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 227

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +IE D   A  I   L +E+++     LG   +       FD I+LD+ L DI G  
Sbjct: 5   QIFIIEGDAKTAAYIRQELATEHYDCTTDTLGLSALNKLAGNRFDLIVLDIRLLDISGLL 64

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + + +R  KIS  PV I+S    I  KV+  + GA+DY++KPFN  EL ARI A++   +
Sbjct: 65  LCKEIR--KISAVPVLIISDCDDITTKVKAFEYGANDYLTKPFNCRELSARIHALLHSGK 122

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    +   DL V+LDA  V ++  RI LT KE+ ++  L   KN  L++   L H
Sbjct: 123 AVCNNFRRTLTLKDLLVDLDAHEVYIKERRISLTKKEFSLLTFLIHNKNIVLSRHSILEH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         ++DV+I  LR KL      ++YI TV G GY++RE
Sbjct: 183 VWGYDFFGTTNVVDVYIRYLRSKLCTDR-HESYITTVRGVGYIVRE 227


>gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1]
 gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1]
          Length = 231

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  LK EN+ V +   G  G+E    ++ D I+LD+ L  + G E
Sbjct: 5   RVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGRWQPDLILLDIMLPGMNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR  +  TPV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RRS+ 
Sbjct: 65  VLAALR-RRDDTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSQS 123

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           HA +        +V   L++     +      R+ LT  E+ ++  L        T+   
Sbjct: 124 HAPAAESLRWAGLVVDPLALTAVVASDSDAPRRLDLTPTEFSLLVTLMRAPTRPFTRLFL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L H     D  E +++D  +  LR+KL  AAG  + +  V   GY  R+
Sbjct: 184 LEHCLPESDALE-RVVDTHVYNLRRKL-EAAGISDVLPAVRSVGYRFRQ 230


>gi|289805396|ref|ZP_06536025.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 175

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 5/174 (2%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL D  G   L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EE
Sbjct: 1   MVLDLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEE 60

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L ARIRA++RR     +S +  G+L++N+        G  + LT KEY ++  L L+  +
Sbjct: 61  LHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGS 120

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +E+  N +Y+  +EP    ++V I  LR K+     GK+ I TV   GY+L
Sbjct: 121 PVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRRFGYML 169


>gi|116253844|ref|YP_769682.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258492|emb|CAK09596.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++ G 
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G ++ +L+++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVGFGGITFDLNSRTFSSGDTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISANAIEQYVSRLRKRLSPYG---LTVKTARGIGYYL 218


>gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 12/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E       +   +   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDRETGRYLEKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+ARI  + RR S
Sbjct: 61  SIVSELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRRKS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAKDET 229
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+  A D+T
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDIPLLHTVRGAGYMLK--APDKT 227


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +E+ L+ E + V     G DG+E      +D ++LD+ +  I G E+
Sbjct: 5   ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + PV +L+  SSI DKV GL  GA+DY++KPF  EEL+AR+RA +R     
Sbjct: 65  LRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATK 124

Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +L V       GDL ++   + V    H I LT +E+ ++  L   +   L++E  L 
Sbjct: 125 DMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++      +  ++DV+I  +R K+         I TV G GYVL+E+
Sbjct: 185 NVWGIDYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVLKES 232


>gi|239940925|ref|ZP_04692862.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239987401|ref|ZP_04708065.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291444359|ref|ZP_06583749.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291347306|gb|EFE74210.1| two component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 219

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  ++  L++  F   V + G+  +       FD ++LD+GL    GF 
Sbjct: 3   RILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A+++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R   R +  
Sbjct: 63  VLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRRRTAAR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++ +G L+++L  +    +   + LT +E+ ++E+        L++E  L+H++ 
Sbjct: 123 APEVTMLRSGTLALDLRTRRARAEDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LR+KL     G   +ETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAERLETVRGMGYRL 218


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RI ++ED++ +A  +++ L+ E F   + + G    E      FD ++LD+ L  + G 
Sbjct: 5   VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R    S P+ +L+    +EDKV GL  GADDY++KPF  EEL+ARIR  +R+  
Sbjct: 65  TICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123

Query: 121 GHAQSLIVTGDLSV-NL----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                + +   L V NL        VEV G  +HLT KEY ++E +   K T LT++  L
Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      +  ++DV+I  LR KL +    K YI TV G GY ++E
Sbjct: 184 EKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEK-YIYTVRGVGYAVKE 230


>gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++   G + ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R     + +D F+ +LR  + + A    ++ETV G GY
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGY 226


>gi|59713394|ref|YP_206169.1| transcriptional regulator [Vibrio fischeri ES114]
 gi|59481642|gb|AAW87281.1| transcriptional regulator [Vibrio fischeri ES114]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED + L  S+ + L +  F V  T  G  G+ +    ++D IILDL L ++ G 
Sbjct: 1   MKILLIEDSEHLRRSLIVGLSNLGFTVDETGDGSKGLSMAITNDYDFIILDLMLPNVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+++R       V ILS  S  ED+V GL SGADDY+ KPF+ +EL ARI  + RR +
Sbjct: 61  TLLKSIRKMGNDVKVIILSAKSQPEDRVEGLMSGADDYLVKPFSFDELHARILTVGRRGQ 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I  G   ++L  KT+E     I LT  EY++IE L L KN  +T E   +++ 
Sbjct: 121 VKNNDDDINIGLFKLDLAKKTLEFDTKFIDLTKNEYKIIECLFLSKNQVMTTENISDYVV 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D      I+  +  +RKK+  A GG+  ++   G GY + ++A
Sbjct: 181 GSFDSLSKNTIESHLSSVRKKVK-ALGGELPVKNKRGFGYYVEKDA 225


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +EL      D ++LD+ L  + GF V
Sbjct: 14  ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGFAV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI +I+RR  RG
Sbjct: 74  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGRG 132

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 133 SATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 192

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 193 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242


>gi|225077278|ref|ZP_03720477.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens
           NRL30031/H210]
 gi|224951422|gb|EEG32631.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens
           NRL30031/H210]
          Length = 225

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G +         +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSRGSEVAAAVAAQAYDLLLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R    + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLAQIRSGGCTIPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+L+  G +++N      EV G    I L+ KE+ +++ L LR    L++    + +
Sbjct: 121 GQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y   +E E   +D  I  LRKKL     GK  I+ V G G+++ +N
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221


>gi|109453246|gb|ABG34103.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453248|gb|ABG34104.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453250|gb|ABG34105.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453252|gb|ABG34106.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453256|gb|ABG34108.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453260|gb|ABG34110.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453262|gb|ABG34111.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453264|gb|ABG34112.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453266|gb|ABG34113.1| PhoP [Salmonella enterica subsp. enterica]
 gi|109453268|gb|ABG34114.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453270|gb|ABG34115.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453272|gb|ABG34116.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453274|gb|ABG34117.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453276|gb|ABG34118.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453278|gb|ABG34119.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453280|gb|ABG34120.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453284|gb|ABG34122.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453286|gb|ABG34123.1| PhoP [Salmonella enterica subsp. salamae]
 gi|109453308|gb|ABG34134.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453310|gb|ABG34135.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453314|gb|ABG34137.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453324|gb|ABG34142.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453328|gb|ABG34144.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453330|gb|ABG34145.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453332|gb|ABG34146.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453334|gb|ABG34147.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453336|gb|ABG34148.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453338|gb|ABG34149.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453340|gb|ABG34150.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453342|gb|ABG34151.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453344|gb|ABG34152.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453346|gb|ABG34153.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453348|gb|ABG34154.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453350|gb|ABG34155.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453352|gb|ABG34156.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453354|gb|ABG34157.1| PhoP [Salmonella enterica subsp. houtenae]
 gi|109453356|gb|ABG34158.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453358|gb|ABG34159.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453360|gb|ABG34160.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453362|gb|ABG34161.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453364|gb|ABG34162.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453366|gb|ABG34163.1| PhoP [Salmonella enterica subsp. indica]
 gi|109453368|gb|ABG34164.1| PhoP [Salmonella bongori]
 gi|109453370|gb|ABG34165.1| PhoP [Salmonella bongori]
 gi|109453372|gb|ABG34166.1| PhoP [Salmonella bongori]
 gi|109453376|gb|ABG34168.1| PhoP [Salmonella bongori]
 gi|109453378|gb|ABG34169.1| PhoP [Salmonella bongori]
          Length = 213

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD  LA  +E  L    + V V   G    E L      D  +LD  L  + G
Sbjct: 1   MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R LR   ++ P+ +L+    + D+V GL +GADDY+ KPF+ +EL+AR+RA+ RR 
Sbjct: 61  VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL V+  A+ V   G  I L+ +E+ ++ LL       +++ M L+ ++
Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  +    +IDV +  +R K+    G +  I T+ G GY
Sbjct: 181 DGETDLRSNVIDVHLAAIRAKIDKPFGTET-ITTLRGVGY 219


>gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 228

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +  +++  L+ E + V+V   G +G+ + +  + D +ILDL L D+ G 
Sbjct: 1   MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLMLPDMKGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R A     + +L+   S+E ++ GL  GADDY+ KPF+  ELVARI+ +VRR  
Sbjct: 61  EICQQIR-AISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMN 119

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q++ +  D  L ++   + V+VQ   +  T  E+ ++ LL   K   LT+E  +N +
Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 180 LGFDFNGYD----RTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGY 220


>gi|291558106|emb|CBL35223.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 227

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 116/203 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L  ED+ ++A ++  +L   N+ V     G D ++  +  ++D IILD+ +    G 
Sbjct: 1   MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    +TP+ +L+  + +ED++ GL  GADDY+ KPF   EL++R+RA++RR  
Sbjct: 61  EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++S+NL +  ++     I L   EY+++ELL L K   L+ +  L  ++ 
Sbjct: 121 RFTPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDILVKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
              + E   + V+I  +RK+L+ 
Sbjct: 181 YESDAESGAVWVYISYVRKRLAT 203


>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
 gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
          Length = 232

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+K +  ++++ L  E+F +     G++ +E+ +  + D +++D+ +  + G +
Sbjct: 3   RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + +R  + + P+  LS     EDK+ GL  GADDYI+KPF+ EE++ARI+A +RR   
Sbjct: 63  ATKEIRKNQ-NIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   Q + + G +++N   K V V G  I LT  EY +++         LT +    
Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181

Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  ++EP      I V I  LR+K+        YI+ VWGRGY
Sbjct: 182 EVW--KEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGY 224


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A  I+  ++   + V     G++G E  K   F  +++D+ + ++ G  
Sbjct: 4   RILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R+     P+ I+S  +    KV+GL  GADDYI+KPF+  EL AR+ + +RR R 
Sbjct: 64  LCKNIRLTS-DVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   L     L +  + K VEV G  IHLT KE++++ L++     T TK    
Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+  +D      + V I +LR+KL       N+IETVWG GY
Sbjct: 183 EILWGEKDVHGNNTVTVHIKELREKLKENIKNPNFIETVWGVGY 226


>gi|332709036|ref|ZP_08429006.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352225|gb|EGJ31795.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           MR+LL+ED+  L  +I+   ++ N   YV DL  +G E   +      ++   I D  L 
Sbjct: 1   MRVLLVEDEPDLGAAIK---RALNIEKYVVDLVVNGTEAWGYLNNHETQYTLAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+LR LR +    P+ +L+    +ED+V GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GLSGLELLRQLRYSNNPLPILMLTAKDRLEDRVMGLDTGADDYLVKPFLMAELLARVRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQGHRIH--LTGKEYQMIELLSLRKNTTLT 170
            RR+       +  GDL ++   +TV      G ++H  LT KE+Q++E      N  +T
Sbjct: 118 HRRTPLLQPQQLQVGDLILDYGNRTVYRLAANGEKLHVPLTNKEFQLLEYFMKHPNQVMT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                N L++   EP   ++   +  LR+KL  +      IETV G GY L
Sbjct: 178 TNQIRNQLWEVNAEPISNVVAAQMRLLRRKLE-SINSSIPIETVHGLGYRL 227


>gi|309777246|ref|ZP_07672209.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915116|gb|EFP60893.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 129/222 (58%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L+IED++ +A  + L LK   +   Y  D GE G  + +   +D I+LD+ L  I G
Sbjct: 6   MRLLIIEDERPIAEVMMLNLKRIGYQCDYAMD-GEQGARMVEKQSYDLILLDIMLPKING 64

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E++  L  +++  PV  ++   S++++V+GL+ GADDY+ KPF  +EL+AR+  ++RR 
Sbjct: 65  YELMEYL--SELEIPVIFITAKGSVQERVKGLRMGADDYLVKPFAIDELLARVDNVLRRY 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q + V  D++++   + V+ +G  I LT KE+ ++  L   KN  L ++     L+
Sbjct: 123 HKSMQEIHVL-DVTIHTATRVVKKKGTVIPLTKKEFDLLLYLVQNKNIALYRDTMYEKLW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D  + + +D+ I +LRKKL+      + I+TV+  GY+L
Sbjct: 182 REEDYEQTRTLDLHIQRLRKKLN----WHSVIQTVYKIGYML 219


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++ L   +    +     V     G +G++L +  ++D +ILD+ L ++ GF
Sbjct: 1   MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  +R      PV +L+   S+ED+V GL+ GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S++  G L+++  A+   V   ++ L  +E+ ++ELL   +N   +++  +  ++ 
Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    ++DV I  LR KL         + TV G GY
Sbjct: 181 KEYDGTSNVVDVHIKYLRDKL-RPFNLDMMVVTVRGVGY 218


>gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IEDD   A+ +   L          D GE G+++    ++D +I+D  L    G 
Sbjct: 2   LQILVIEDDHEAANYLAKGLSELGHRADKADDGETGLQMALDRDYDILIVDRMLPKRDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR +   TPV ILS +  ++D+V GL++G DDY+ KP+   EL AR+ A+ RR +
Sbjct: 62  AVIEELRKSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPK 121

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +Q  +    GDL+++  A +       I L  +E++++E L       +T+ M L ++
Sbjct: 122 SASQVETTYTVGDLTLDRMAHSCRRGDMEIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV I +LR K+         + T+ G GY +R+ A
Sbjct: 182 WEYHFDPQTNVIDVHISRLRGKIDKGF-DVPLLHTIRGAGYTIRDTA 227


>gi|148556617|ref|YP_001264199.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501807|gb|ABQ70061.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           MR+L++ED+  +A  I   L+   F   V D+  D     +     ++DAI+LDLGL D 
Sbjct: 8   MRLLVVEDNDRMAALIADGLRRRGF---VCDIALDLAQADDAMAGAQYDAIVLDLGLPDG 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + L   R  +   P  I +   ++ED+V GL +GADDY+ KP   +EL ARIRA++R
Sbjct: 65  DGIDWLAGRRKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLR 124

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q +I  G L  +  +++  +    + L+ +E  ++ELL  R  T + +++  N 
Sbjct: 125 RPGVRTQPVIEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENA 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LY   D      ++  + +LR+KL  AA     + TV G GY+L++ 
Sbjct: 185 LYSFNDPVTPNAVEAAVSRLRRKLDEAA-MPGTLHTVRGVGYMLKDG 230


>gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 224

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 128/238 (53%), Gaps = 17/238 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   LAH ++  L    F V   DL  DG+    L +   +  ++LD+ L  +
Sbjct: 1   MRLLLVEDHPELAHWLKKALGEAGFAV---DLVGDGVAADHLLQQEAYTLVVLDVSLPRM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+  +S+ D+V+GL  GADDY++KPF   EL AR+RA++R
Sbjct: 58  DGLALLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G  Q +   G+LS + D     +Q   + LT +E  ++  L  R+   ++++     
Sbjct: 118 RSQGQVQDVQRLGNLSWH-DEGYFLLQDKPLALTPREQAVLHTLMQRRGRPVSRQYLYEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           ++   DE     +D+++ ++RKKL   AG    I T+ G GY L        C++ E+
Sbjct: 177 VFTLADEASTDSLDLYVHRIRKKL---AGSDVMIVTLRGLGYSLE-------CQHAES 224


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 123/218 (56%), Gaps = 4/218 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++   + E +  +    G++ +E    + FD I+LD+ +    GF+
Sbjct: 3   KILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    +TPV +++      DK+ G   GADDYI+KPF+ +EL+ARI+A+++RS  
Sbjct: 63  TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV GDL VN+ + TV + G+ + LT KE+ ++  L+   +  L++E  L  ++  
Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + + +D  I  LR++L +    +  I+TVWG GY
Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGY 216


>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++   +++  K  NF V     GE+G+   +    D ++LD+ L  I GF+
Sbjct: 4   KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+      DK++GL+ GADDY+ KPFN  EL+ R ++++RR  G
Sbjct: 64  VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +     +  + +G   + L ++ V  +   I LT KE+ ++++    KN   T++  L+
Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I +LR K+ +      YIETVWG GY  R+
Sbjct: 184 KIWGYDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYRWRK 230


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A +         ++ GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227


>gi|325293818|ref|YP_004279682.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325061671|gb|ADY65362.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 232

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+ED++ L+  +  +L+   + V V   G           FD +ILDL L ++ G 
Sbjct: 7   LRILLVEDNQVLSEGLCALLRGSGYAVDVVSDGASADAAIAAENFDLVILDLNLPEMDGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR++R  +    V IL+   + E+KV+GL  GADDY+ KPF+  E  AR+R ++RR+ 
Sbjct: 67  EVLRSMRSRQDKAAVLILTARGTPEEKVKGLDLGADDYMIKPFDITEFEARVRVLLRRNA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  G +  +L ++T    G  + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 127 GLRSSTLSFGKVLFDLTSRTFSADGRPLDIPAREVALLEVLFMRAGKVVAKEAIVQSLTG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+ ++ +LR++L  A  G   ++T  G GY L
Sbjct: 187 FDDEISGNAIEQYVSRLRRRL--APHGLT-VKTARGIGYYL 224


>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 234

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L+ E F+  V   GE G E      +D I+LD+ +  + G +
Sbjct: 10  KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LRA+R  K +TPV +L+      D++ GL+ GADDY+ KP    E+VAR+RAI+RR++ 
Sbjct: 70  ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 128

Query: 122 --HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNH 177
             +AQ + +T G L++  + +  E  G+ + LT  E+ ++E+L       ++K ++ L  
Sbjct: 129 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 188

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  GR      + IDV +  +R+K+   A G++YI+TV+  GY L
Sbjct: 189 L--GRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQL 231


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E +++     G  G+ + +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQSL-IVTGDLS---VNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++L +  G LS   + +D    EVQ +R  I LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++  + E     ++  I +LR K+ +       I TVWG GY
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGY 229


>gi|219523859|gb|ACL14892.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Hartford]
          Length = 215

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 2   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 59  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 119 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 179 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 214


>gi|187933916|ref|YP_001884616.1| PhoP family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722069|gb|ACD23290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQSINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKSEVKNKTNDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---VGNEDVIKTIYGVGYRL 229


>gi|94313751|ref|YP_586960.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93357603|gb|ABF11691.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 107/221 (48%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++  LK     V       +         +DA++LDLGL D  G 
Sbjct: 1   MRILIVEDDPMLGDGLQRGLKLIGHAVDWFGTAAEADRAIGMMHYDAVVLDLGLPDDDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV +L+   ++  ++ GL +GADDY+ KP   +EL AR+RA+ RR+ 
Sbjct: 61  ALLGRWRQQGRQMPVVVLTARDAVASRISGLDAGADDYLVKPVELDELAARLRAVTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +   G L     A+     G  + LT +E  ++ELL    N  LT+E   + LYD
Sbjct: 121 GMPEPVWRHGPLEYQPAARLALWHGKAVDLTSRESMLLELLLTYPNRVLTREFLRDKLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   ++V I  LRKKL         + T+ G GY L
Sbjct: 181 WDKGSESNTLEVHIHHLRKKLH-----PGIVRTLRGAGYTL 216


>gi|320531577|ref|ZP_08032524.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136213|gb|EFW28214.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 219

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E  +  ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVEINDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVSDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVIEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P      V I  LR+KL    G    I+TV G GY
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGY 215


>gi|313888128|ref|ZP_07821802.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845818|gb|EFR33205.1| response regulator receiver domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 224

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  SI+  L    + V     G++G  +     +D IILD+ L    GF
Sbjct: 1   MKILIVEDEEKLLKSIKEGLVHSGYAVDTALDGDEGSFMAFTNSYDLIILDVNLPGKNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R       V +L+ +S ++D+VRGL  GA+DYI KPF+ EEL ARIR+++RR  
Sbjct: 61  EILEEIRERDREVNVIMLTALSDVDDRVRGLDLGANDYILKPFHFEELKARIRSLLRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S+I    +  +   +T  +    + LT KE  ++E L       +T E  ++H+++
Sbjct: 121 SISDSIIRAHGVEFDTAKRTFAIDKEALKLTAKEAGILEYLFFNLGRYVTAEELMDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++ V +  LRKKL +   GKN I    G+GY++ E
Sbjct: 181 DEVDLFSNVVRVHMSALRKKLKDKL-GKNIIRNEIGKGYIIDE 222


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIR-EQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A +         ++ GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + ++R K+        Y+ TV G GY
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGY 227


>gi|149278618|ref|ZP_01884754.1| two component transcriptional regulator, winged helix family
           protein [Pedobacter sp. BAL39]
 gi|149230613|gb|EDM35996.1| two component transcriptional regulator, winged helix family
           protein [Pedobacter sp. BAL39]
          Length = 234

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+ED+  L  +I+L L+ E + V+    G+  +++ K   F+ IILD+ L ++ GF
Sbjct: 5   LRILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R+     P+  L+  ++ ED+V GL+ GADDY+ KPFN EEL+ R+  +V+RS 
Sbjct: 65  QVCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKRSM 124

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A  L        GD ++  ++  ++   G  + LT KE  +++LL  RKN  +++E  
Sbjct: 125 -KADDLKEINSYKIGDKTIYFNSFELKHDDGVIVPLTKKETMLLKLLIERKNEAVSREQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  +++    P  + ID FI   RK          Y  ++ G GY
Sbjct: 184 LETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPVYFHSIRGVGY 228


>gi|329901628|ref|ZP_08272867.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327549057|gb|EGF33661.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 220

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L IEDD  L  S+   L+ E + V     G  G++    + +D ++LDLGL  I G 
Sbjct: 1   MRLLYIEDDAMLRDSVSKGLQHEGYTVDAVGDGRSGLQAMTTHAYDLLLLDLGLPRIDGN 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV IL+   +I D VR L +GADDY+ KPF+ +EL AR++A++RR  
Sbjct: 61  AVLAALRQRGDTIPVLILTARDAIADCVRSLNAGADDYLVKPFDLQELAARVQALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G L +N     V + G  + L+ +E+ +++ L  R    L+       +Y 
Sbjct: 121 GRADALVRHGALELNTTTHAVTLGGAGVALSAREFAVLQALLERPGAILSVPQLEEKIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V+I  LRKKL     G   I  V G GY++
Sbjct: 181 WGDEIGSNTVEVYIHGLRKKL-----GAGLIGNVRGVGYMM 216


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  IARRLRKTS-AVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQ- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H + +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 122 HGE-VIQIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +   G   I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRD-LDGYGIIRTVRGIGYALK 220


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD ALA  ++     +NF V  T  G++ + L +    D ++LD  +    G 
Sbjct: 4   LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR      + P+ +L+     +D++RGL++GADDY++KPF+  ELVAR+ A++RR
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R   ++  +   D+ ++L +  V+  G  + +   E++++  L        ++E  L++
Sbjct: 124 IRPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E++ +DV I +LRK L N  G  + I TV   GY L
Sbjct: 184 IWGQDSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYAL 226


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 129/228 (56%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++ +   +++ L+ EN+ +   D G+D +      ++D I+LDL L    G 
Sbjct: 5   VKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCKEIREKK-ATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAA 123

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   L+++ DA  V V G  ++LT KEY+++  L+   +    +E
Sbjct: 124 NTMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
             L  ++      +++ +D  I +LR+KL+  +      I TVWG GY
Sbjct: 184 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGY 231


>gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   ++ +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR A+ +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLR-AESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDNK-LIHTLRGVGYVL 220


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G   ++L      D +ILD+ L D+ GFE
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    S PV  L+   +  DK+ GL  G DDY++KPF  +ELVAR+RA++RR+  
Sbjct: 66  VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +   D+ ++ D   V   G  I L+  E+ ++       N  L++  
Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185

Query: 174 FLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ +  YD   EP V  +D ++  LR+KL     G + I T  G GY LR  A
Sbjct: 186 ILDAVWSYDFAGEPTV--VDQYVSYLRRKLGRH--GPSLIHTQRGFGYALRLPA 235


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD A+   + + L+ + F V     G   + L    + D  +LD  L  + G E+
Sbjct: 18  VLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLP--QADVAVLDWMLPGMTGLEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R         P+ +L+     EDK+ GL+ GADDY++KPF+  E+VAR++ ++RR    
Sbjct: 76  ARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRM--G 133

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I  G+L +++ A+   ++G  + L+  E+ ++  L+       T+E  L  ++ G 
Sbjct: 134 VREVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVW-GV 192

Query: 183 DEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D P + +++DV I  LR+KL + A    YIETV G GY  REN +
Sbjct: 193 DYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFRENGQ 237


>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 20  KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 79  TLKELR-QQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 137

Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       S  +  D L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 138 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 197

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 198 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLM 245


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +  +  TD  E   +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKTVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|288960589|ref|YP_003450929.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912897|dbj|BAI74385.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 224

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED + LA +I   L+   + +     G    EL    E+  +ILDL L    G 
Sbjct: 1   MRILVVEDTEDLADAIIQRLRKHGYAIDWAADGYQAEELLAGEEYQLVILDLMLPGPDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR     TPV +++  S ++ KV  L  GADDY+ KPF+  EL AR RA++RR  
Sbjct: 61  TLLRQLRRKGDQTPVLVVTARSRVDTKVDALDLGADDYVVKPFDFRELEARCRALLRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S  V G+L  +   K V V+   + L+ +E++++EL        +TK+  ++ L  
Sbjct: 121 GIATSEQVFGNLVFDTATKKVTVEAQAVDLSAREFRLLELFLSNLKRVMTKDTLIDRLC- 179

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D+P     I++++ +LR+KL  A+     I TV G+GYV
Sbjct: 180 SLDQPVAPNAIELYVSRLRRKLDRAS---VVIRTVHGQGYV 217


>gi|256848291|ref|ZP_05553734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714889|gb|EEU29867.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 222

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 110/179 (61%), Gaps = 1/179 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L+  + + + +  ++V   + G+  ++L K   +D +I D+ +    G 
Sbjct: 1   MRILLAEDEAQLSRVLTMAMTNAGYHVDHAENGQRAVDLAKDNAYDVMIFDIMMPVKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R     T V +L+ MS ++DKV GL +GADDY++KPF+ +EL+AR+R++ RR+ 
Sbjct: 61  EALKEIRATGDRTYVMMLTAMSEVDDKVTGLDAGADDYMTKPFSLKELLARLRSLERRNE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  Q ++  GDL+++ + +T+ V  + I LT KE ++++ L L  N  L+    LNH +
Sbjct: 121 GLDQDVLQFGDLTIDNNQQTL-VSNNSISLTSKEARLLQYLILNANKQLSINELLNHTW 178


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ + +L    E   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ +L+   N   + +  
Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++AL   +   L++E F V     G+D   L      D ++LD  L  + G 
Sbjct: 1   MQVLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGI 60

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ R +R  + +   PV +L+      D+VRGL +GADDYI KPF+  EL+ARIRA++RR
Sbjct: 61  ELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRR 120

Query: 119 SR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++  H    +  GDL ++     V   G  +HL   E++++E L L      ++E  L+ 
Sbjct: 121 AKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +DV + +LRK L N     + I TV G GY   E 
Sbjct: 181 VWGHDVYIDERTVDVHVGRLRKAL-NGPRQADPIRTVRGSGYAFDET 226


>gi|327402556|ref|YP_004343394.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327318064|gb|AEA42556.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   +E+ L+S ++ V + + G++G+     +  D IILDLGL D  G  V
Sbjct: 6   ILIIDDEPHIRKLLEINLESNDYKVSMAETGQEGLLKAVNHPPDLIILDLGLPDKNGHIV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      P+ ILS  +  E  V+ L +GA+DY++KPF  +EL+ARIR+ +R S   
Sbjct: 66  LKELR-EWYGKPIIILSAQNEEESIVKALDNGANDYLTKPFRSQELLARIRSGIRHSE-- 122

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +Q++I T   GD+ ++L A+ V+ +G  + LT  EY ++ LL+      LT +  L  ++
Sbjct: 123 SQTVITTMEFGDIELDLTARVVKKRGQEVKLTFTEYSLLVLLAKYAGKVLTHQFILKEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + E + + VF+ ++RKK+        ++ T    GY
Sbjct: 183 GPGYQMETQYLRVFVAQIRKKIEENPNDPKHLLTESRVGY 222


>gi|310779378|ref|YP_003967711.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748701|gb|ADO83363.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  + + I+ +L+ EN +  V   G++   L     FD IILD+ L D  GF++
Sbjct: 6   ILIVDDDIKICNLIKEVLEPENISTTVATTGKEAQSLLISKTFDLIILDIMLEDTDGFQL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +R ++V KI TP+  L+G     DK+     GADDYI+KPF+   L+AR++A +RR  R 
Sbjct: 66  MRNIQVEKIDTPIIFLTGKQQDYDKILAFGMGADDYITKPFSVSVLIARVKAHLRRGDRV 125

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               L    +V     +NLD   +   G  I L+ KE ++++      N   TK+     
Sbjct: 126 KELQLSSKKLVKEPFILNLDTYQLFKNGKEIFLSAKEIKIMKFFMENPNIIFTKDQLYEK 185

Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    D   V+   V+I  LRKK+ +      Y++T WG GY
Sbjct: 186 IWNDVFIDNNSVR---VYILNLRKKIEDNPQKPKYLKTAWGIGY 226


>gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 219

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 6/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +   L++  F   V   G  GI+     EFD ++LD+GL    GFE
Sbjct: 3   RILIVEDEERIASFVAKGLRAHGFTPTVVADGITGIDYAVSGEFDLVVLDIGLPGADGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE-LVARIRAIVRRSR 120
           VL  LR  +   PV +L+   S+ D V  L+ GA DY+SKPF  +E L      +   S 
Sbjct: 63  VLERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVASE 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GD+ ++L  +   V G  + L+ +E+ + E+L   +   L++E  L+ ++ 
Sbjct: 123 PAADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++DV++  LRKKL     G + + TV G GY
Sbjct: 183 YDFDPGSNVVDVYVGYLRKKL-----GADLVSTVRGVGY 216


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V  +G  + LT  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|37526697|ref|NP_930041.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786129|emb|CAE15181.1| Two-component response regulator PhoP [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 222

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           MRIL++ED+  L H + + L+      ++ D   +  E   +Y    E D  I+DLGL  
Sbjct: 1   MRILIVEDNMLLRHHLTVQLRDTG---HLVDAAANAKE-ADYYLVESEPDIAIVDLGLPG 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G  ++R  R      P+ +L+   S ++KV  L +GADDY++KPF+ EE++AR++A++
Sbjct: 57  EDGLSLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALL 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR+ G    +I      ++L  K   V G  + LT  EY++IE+L    +  +TKE  + 
Sbjct: 117 RRNNGLVSQIIEFPPFKIDLSRKEFTVYGESVKLTAFEYRIIEILMCNSDKVVTKESLMR 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            LY   +  E   IDV I +LRKK+ +    +  I TV G+GY
Sbjct: 177 QLYPDAELREGHSIDVLIGRLRKKILDIWPYEA-IVTVRGQGY 218


>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ +  L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +G    ++  G L +N D+  V+ V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGY 224


>gi|157164687|ref|YP_001466781.1| extracellular solute-binding protein [Campylobacter concisus 13826]
 gi|112800153|gb|EAT97497.1| DNA-binding response regulator [Campylobacter concisus 13826]
          Length = 220

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD+ L   I   L    ++V  T+  +D ++L     FD +ILD+ L    GF
Sbjct: 2   VRILLVEDDETLLDLISEYLGENGYDVTTTNNAKDALDLAYERNFDLLILDVKLPQGDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR   ++TP    + +++I+D  +G +SG DDY+ KPF  +EL+ R++A+++R+ 
Sbjct: 62  SLLSSLRELGVTTPSIFTTSLNTIDDLEKGYKSGCDDYLKKPFELKELLIRMQALIKRNF 121

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H   + + +  DL  +  +KT+   G  ++++ KE  ++ L    K   LTK+   N +
Sbjct: 122 SHQNGEDIKILDDLCFHPQSKTLSKNGENVNISSKESDLLALFLQNKGKILTKDEIFNKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   +EP    + V+I  LR+ L     GK+ I    G GY+
Sbjct: 182 WKFDEEPSELSLRVYIKNLRQIL-----GKDAILNKRGDGYI 218


>gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
 gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   I+  LK   ++V     GE+  +     E+DA++LD+ +  + G 
Sbjct: 1   MRILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIMMPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV +L+   SIED+V GL +GADDY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  TVLKKLRREENALPVLLLTAKDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVLLRKPV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DLS+++D + V      + L+ KEY ++  +       L+++    H++D
Sbjct: 121 TEKSSILNVADLSLHVDTRRVFRGNRELQLSSKEYSLLHYMMQNAGVVLSRDKLEQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +IDV+I  LRKK+      K  I TV G GYVL+++ 
Sbjct: 181 YDFSGGSNVIDVYIRFLRKKVDEGY-DKKLIHTVRGHGYVLKDDT 224


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++   + + L+ E ++V     G  G+        D ++LD+ L ++ GF+
Sbjct: 7   RILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR     TPV +LS      DK+ GL  GADDY+ KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRHP 126

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +  VT GD+ V++  KTV   G  + LT +E++++         T ++E  L+  + 
Sbjct: 127 ASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E   + +D F+ +LR K         +  T+ G GY
Sbjct: 187 FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGY 225


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  ++  ++  L+   +       G  G+ L +    D +ILDLGL D+ G E
Sbjct: 4   RILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +++ KV  L++GADDY++KPF  EELVAR++  +R    
Sbjct: 64  VTRRLR-KNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLR---- 118

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H Q   +I  GDL ++   +    +GH + L+ +E+ ++  L+ +     ++      ++
Sbjct: 119 HQQHGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G       ++DV +  +R KL +   G   I TV G GY L+
Sbjct: 179 SGDLPSNSNVVDVHMANMRSKLRD-LDGYGLIRTVRGIGYALK 220


>gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
 gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
          Length = 232

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 7   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V    DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+ +       ++TV G GY L
Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 228


>gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 219

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+ L     +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G L ++  A+ V      + LT KE+ ++E L  R    ++K   L H++D
Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I++V+I  LR+KL  AA     I TV G GY L
Sbjct: 181 FAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRL 216


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+++D+K ++  ++  L  E F V     GE+G  L  F+E   D +ILDL L  I G
Sbjct: 3   KILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEG--LAAFHEKNPDLVILDLMLPKIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR 
Sbjct: 61  LEVCREIRKTS-HVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQ 119

Query: 120 R--------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +            + IV G L+++ DA  V  +G  I LT +E++++  L+      +T+
Sbjct: 120 QLAPAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV + +LR+K+ +      +I T  G GY ++
Sbjct: 180 EHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIK 230


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED + L+  +  +L+ E F+V +   G  G+     +E   ++LDL L  + G EV
Sbjct: 4   VLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR +  + P+ +++   +  DK+ GL+ GADDY++KP++  EL+ARIRA++RR RG 
Sbjct: 64  CKKLRQSS-TVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        ++  G++ ++++  +V V G  I +  KE+ ++E L   +   LT+   ++
Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV + +LR K+ +     +++ TV G GY
Sbjct: 183 RVWGLDYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGY 225


>gi|37958845|gb|AAP51109.1| putative two-component response regulator [uncultured bacterium]
          Length = 228

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L+     V V           +   FD ++LDLGL D  G 
Sbjct: 1   MRVLVVEDDEGIADGLRTTLRQHGAVVDVAGTVAAAWAALRSEPFDLVLLDLGLPDADGG 60

Query: 61  EVLRALRVAKI------STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            +L  LR A        +TPV I++    +  ++ GL  GADDY+ KPF+  EL AR+RA
Sbjct: 61  TLLARLRAAPADGLPEPTTPVLIMTARDQVASRIAGLDMGADDYVVKPFDSNELAARMRA 120

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + RRSRG A  ++  G+L V+  A+ V   G  + L+ +EY ++  L   +   L++   
Sbjct: 121 LQRRSRGRAHPVLSCGELEVDTAARQVRRAGVVVELSVREYALLLALVEVRPRVLSRTQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              LY      +   I+V +  LR+KL N     + I T+ G GY +
Sbjct: 181 EERLYSFDQALDSNAIEVHVHHLRRKLGN-----DIIRTMRGVGYFI 222


>gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 1   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V    DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQ-PVPLLKTVRGLGYRL 222


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  +   ++  L  E F V     GE G+   +    D +ILD+ L  + G E
Sbjct: 4   RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV +L+     +++VRGL+ GADDY++KPF+ + L AR+RA +RR   
Sbjct: 64  VLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRET 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++  G+L+++    +V   G  I LT +E+++++    +     +K + L+  +  
Sbjct: 124 DAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  +++ ++ +LR+KL    G    I T+ G GYVLR+ 
Sbjct: 184 GYLGDPNVVETYVKQLRQKL-EGDGQTRLIHTIRGVGYVLRQG 225


>gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG
           19424]
 gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A +I   L+++        LG D +   +  + D +ILD+GL D+ GFE
Sbjct: 8   RILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGLPDLSGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+RAI+RR+RG
Sbjct: 68  VCRTLRTFS-DAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +         + + D   +   GH + LT  EY ++  L        ++   ++ ++
Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            G  +   + +D  I  LR KL   +A G   I T  G GY L
Sbjct: 187 AGALDTSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  +   +   L  E F V V    EDG  L +       D I+LDL +    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRLLLRETVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR
Sbjct: 67  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPAQEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGATSGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +SL  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL    G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGVLPGNTMTIETVRSVGYRIR 226


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A      L++ +F V +   G  G+E      FD +ILDL L  I GF 
Sbjct: 3   KILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDGFN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  ++  PV I+S   +  DK+RG   GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  VCRRLR-EELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121

Query: 119 -SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +R   Q +  +  G L++   +  V   G  IHLT +E++++  L   +    ++E   
Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V I ++R+K+        YIETV G GY
Sbjct: 182 ERIWGLDAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGY 225


>gi|219870598|ref|YP_002474973.1| transcriptional regulatory protein CpxR/response regulators
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219690802|gb|ACL32025.1| transcriptional regulatory protein CpxR/response regulators
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 241

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 123/236 (52%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F+++    G+D +   K   +D I+LD+ +  + G E
Sbjct: 3   KILLVDDDVDLTELLSELLSLEGFDIHTVHNGQDALTELKIQSYDLILLDVMMPILNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RRS  
Sbjct: 63  TLKQVR-QKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRSIT 121

Query: 122 HAQSLIVTGDLSVN--LDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRK 165
              S+ V     VN   D K ++  G  +H              LTG E+ ++++L    
Sbjct: 122 QKPSMPVETAFIVNDDDDRKLLQFGGVELHPGRQQAIYEGKDLDLTGTEFALLQILMRNP 181

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L +E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 GQILLRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +   L+ E   V V   GE  +   +    D IILDL L  + G E
Sbjct: 3   KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R    S   P+ +L+      DKV GL+ GADDY++KPF+  ELVARI+A++RR+
Sbjct: 63  LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRRA 122

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 L   +  G+L+++ D   + V G +  +T KE++++  L+       T+E  L 
Sbjct: 123 TRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +DV I  LR+K+    G   YIETV G GY  R+
Sbjct: 183 KIWGYDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKFRD 229


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G   +EL      D +ILD+ L DI GFE
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV  LS  ++  DK+ GL  G DDY++KPF  +EL+AR+RA++RR+  
Sbjct: 66  ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                           D+ ++ DA  V   G  I L+  E+ ++       N  L++   
Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++      E  I+D ++  LR+KL     G + I T  G GYVLR
Sbjct: 186 LDAVWSYDYGGESTIVDQYVSYLRRKLGRH--GPSLIHTQRGFGYVLR 231


>gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
 gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +   L+     V     G+ G  + +   +DA ++D  L  I G 
Sbjct: 1   MKILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R A   TP   LS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR R
Sbjct: 61  TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRR-R 119

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  + Q+    GDL +++  +TV   G ++ L  +E++++E L    +  +T+ M L ++
Sbjct: 120 GPTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR K+      K  ++TV G GY L
Sbjct: 180 WEYHFDPQTNVIDVHISRLRSKIDRDF-DKPLLKTVRGAGYTL 221


>gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10]
 gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Antiqua]
 gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis
           Nepal516]
 gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis FV-1]
 gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92]
 gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003]
 gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10]
 gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis]
 gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516]
 gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua]
 gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92]
 gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125]
 gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis Nepal516]
 gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004]
 gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038]
 gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003]
 gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system
           with PhoQ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 223

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL     G+  I T+  +GY
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHQGE-VITTIRSQGY 218


>gi|332289758|ref|YP_004420610.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
           UMN179]
 gi|330432654|gb|AEC17713.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
           UMN179]
          Length = 239

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 17/235 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD      +  +L  E+F V V   GED +       +D I+LD+ +  + G E
Sbjct: 3   KILLVDDDVEFTSLLAEVLAMESFEVEVVHNGEDALHTLDL-SYDLILLDIMMPKLGGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L+ +R  K +TPV +L+      D++ GL+ GADDY+SKPFN  ELVARI+AI+RR   
Sbjct: 62  TLKQIR-QKYTTPVLMLTARGDDVDRILGLELGADDYLSKPFNDRELVARIKAILRRVTK 120

Query: 119 ------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                       + G  Q  +   D+ +    + V  QG  + LTG E+ ++ +L     
Sbjct: 121 VPTPPNVSHIELNNGDDQKTLYFDDIVLYPGRQQVIYQGKDLELTGTEFALLSMLIRNPG 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L++E+    +   R  P  + ID+ +  LRKKL        + +T+ GRGY+L
Sbjct: 181 HILSRELLSIEILGKRLTPFDRAIDMHMSNLRKKLPPRKDNLPWFKTLRGRGYLL 235


>gi|327399578|ref|YP_004340447.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327182207|gb|AEA34388.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 219

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 116/215 (53%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  +A  +   L   N  +   +   +G++  + +++D +ILDL L ++ G +V R
Sbjct: 1   MIEDDPEIAELLAEYLAKFNMKLVNFESPTEGLKALEGHKYDLLILDLSLPEMDGIDVCR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +    I  P+ + S  +   DKV  L+  ADDY++KP+N  ELVARI+A++RR++   Q
Sbjct: 61  EITQRNIDIPIIVSSARNDDSDKVLALELAADDYLAKPYNPRELVARIKALLRRAKPQGQ 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           S        V  D   +  +G ++ LT  EY+++ LL   KN  L++E  L +      E
Sbjct: 121 SDKSDNSFVVKKDEFAIYFKGEKLDLTTAEYEILALLIDNKNRVLSREFILKNTTTMDYE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +DV I ++RKK+ +      YI+++ G GY
Sbjct: 181 SIDRSVDVIISRIRKKIGDDPREPKYIKSIRGIGY 215


>gi|310826081|ref|YP_003958438.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308737815|gb|ADO35475.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 128/227 (56%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD  L+  I   +          D GE+G+       +D I+LDL L  I G+
Sbjct: 1   MKLLIIEDDPNLSDVIRQCVAPFYQTEQAFD-GEEGLYYASQNIYDLILLDLMLPLIDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  KI TPV IL+   ++ DK +G ++GADDY+ KPF+++EL+ RI AI+RRS 
Sbjct: 60  EVLRQLREQKIYTPVLILTARGTMTDKTKGFRTGADDYLVKPFDRDELLLRIEAILRRST 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           GH   + +   +L V    +TV V G  + L GK+Y ++E L   +   +TK    + ++
Sbjct: 120 GHYDIAALCFKELRVETMTRTVTVAGEALDLRGKQYDILEYLVSHQEQLVTKAQIFDKIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +    +++V++  LR+ LS   G  + ++T+ G GY+L    K
Sbjct: 180 GFTTDTSSNVVEVYVSALRRILS-GCGYDSCLKTIRGVGYMLTSGEK 225


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 119/217 (54%), Gaps = 2/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD +LA  + ++L++E     V   G+  +   + +  D ++LDL L  + G  V
Sbjct: 1   MLVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A  S P+ +L+  S   D V GL +GADDY++KPF   ELVARI+A +RR+   
Sbjct: 61  CRQIR-ATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQL 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + L+  GD+ ++    TV  +G  + LT  E+ ++  L        T+E+ L  ++   
Sbjct: 120 GEPLVF-GDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWGYH 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + K+++V + +LR K+ + A   + I TV G GY
Sbjct: 179 HPGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGY 215


>gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 226

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 112/201 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+K L   +        F+V     GE+G+E  K  E + I+LDL L  I G 
Sbjct: 1   MSLLIIEDNKDLVQVLAEGFAENGFSVERAYTGEEGLEKAKNPECECIVLDLMLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + P+ IL+   S+++KV GL  GADD++ KPF+  EL+AR+R ++RR+ 
Sbjct: 61  EVLERLRSNGATLPIIILTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G ++++  A+   V    + L  +E+ ++ELL   +N   T+E  ++ ++ 
Sbjct: 121 ELQHNLLHCGSMTIDPVARECRVDNTILPLRRREFDILELLLRHENQVFTREKIISQVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              +    ++DV I  LR KL
Sbjct: 181 KEYDGTSNVVDVHIKYLRDKL 201


>gi|253579586|ref|ZP_04856855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849087|gb|EES77048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 224

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     +   D I+LD+ +  + G
Sbjct: 4   KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 61  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYEQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220


>gi|237798700|ref|ZP_04587161.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|237806133|ref|ZP_04592837.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021553|gb|EGI01610.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331027246|gb|EGI07301.1| DNA-binding response regulator TctD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 223

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LK+    V V   G          E+   ILD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKAAGLTVDVLHDGVAADLALSSEEYAVAILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGVLVYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQVAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHSVAIVTFRGLGYLL 218


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++++   I L L   NF        E      K  E D I+LD  L  + G + 
Sbjct: 6   ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGIDF 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ +R    +   PV +L+  +   +K+ G   GADDY++KPF+++EL+ARI+AI+RR +
Sbjct: 66  LKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKK 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G+L V+ D+  V  Q   I L   E++++ LL + KN  L++E+ ++ ++
Sbjct: 126 PDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   E + + IDV + +LR  L  + G +N IET+ G GY L +
Sbjct: 186 NNESEIDARTIDVHVKRLRSTLK-SHGIENSIETIRGAGYKLSD 228


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKIVR-KDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 DNAVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 17  MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R +    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 77  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 136

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 137 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I T  G GY+L E
Sbjct: 197 DMNFDSDTNVIEVAIRRLRAKIDDGFEPK-LIHTARGMGYMLDE 239


>gi|119513152|ref|ZP_01632202.1| OmpR subfamily protein [Nodularia spumigena CCY9414]
 gi|119462202|gb|EAW43189.1| OmpR subfamily protein [Nodularia spumigena CCY9414]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 125/233 (53%), Gaps = 22/233 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LC---KFYEFDAIILDLGLT 55
           MRILL+ED+  L  +I+ +L SE    YV D   DG E  LC   ++ ++   I+D  L 
Sbjct: 1   MRILLVEDEADLGLAIKQVLISER---YVVDWVTDGTEAWLCIESQWTDYTVAIVDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ G ++ + LR+ +   PV +L+ +   E++V GL +GADDY+ KPF  EEL+AR+RA+
Sbjct: 58  EMSGLQLCQKLRLHQNPLPVLMLTALGQPENRVAGLDAGADDYLVKPFVMEELLARLRAL 117

Query: 116 VRRS-RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
            RRS +    +L V G         L VN D  T  V    I LT KE+Q++  L    N
Sbjct: 118 QRRSPQLQPSTLTVAGFTLDTANNVLQVNSDGSTPLV----IPLTTKEFQLLMYLMQNPN 173

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +        L+D  +EP   ++   +  LR+KL+N  G    IETV G GY
Sbjct: 174 RIIPGSKLRQQLWDMDEEPISNVVAAQMRLLRRKLAN-YGCPCPIETVPGAGY 225


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+        I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235


>gi|24375094|ref|NP_719137.1| transcriptional regulatory protein RstA, putative [Shewanella
           oneidensis MR-1]
 gi|113971341|ref|YP_735134.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048578|ref|YP_739128.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|24349856|gb|AAN56581.1|AE015796_3 transcriptional regulatory protein RstA, putative [Shewanella
           oneidensis MR-1]
 gi|113886025|gb|ABI40077.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890020|gb|ABI44071.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 237

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  I G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGIDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L++    ++ 
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN  +DG+D    + IDV I +LRKKL++       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     Y  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +R +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIR-SWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +G  Q   S    G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + V++  LRKK+ +      YI+T  G GY
Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGY 227


>gi|304436456|ref|ZP_07396430.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370502|gb|EFM24153.1| two component response regulator IrlR [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 225

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL EDD  L   I+ ML+  + +V +VTD G D      + E+D +ILD  +    G
Sbjct: 1   MRVLLAEDDLRLGKLIQYMLEQNDISVEWVTD-GSDIYAYATYTEYDILILDWMMPGESG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +    LR       + +L+   S+ED+V+GL +GADDY+ KPF   EL+AR+RA+ RRS
Sbjct: 60  VDACARLRRNGYDRAILMLTARDSVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRS 119

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ +
Sbjct: 120 TQRIQHEVDEIGGFKLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +     ID ++  LRKKL +AAG    I+T+ G GY L
Sbjct: 180 WGLEADVSSNNIDSYMKMLRKKL-DAAGEGASIKTIRGVGYKL 221


>gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 231

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I L +K   FNV  TD GE  +EL + +  D +ILD+ L  I GF V
Sbjct: 4   ILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDGFRV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 64  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 124 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227


>gi|160894157|ref|ZP_02074935.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50]
 gi|156864190|gb|EDO57621.1| hypothetical protein CLOL250_01711 [Clostridium sp. L2-50]
          Length = 233

 Score =  119 bits (298), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+ ++   V   G   I     +  + I+LDLGL D+ G +V
Sbjct: 6   ILVVEDDPSVRNLITTTLKTNDYRYVVAPNGSAAIMEATSHNPEIILLDLGLPDMDGIQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R +  + P+ ++S  S   DK++ L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IQTVR-SWSNVPIIVISARSEDNDKIKALDAGADDYLTKPFSVEELLARLRVTQRRLSLM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S+ V G L V+       +  + +HLT  EY+++ LLS      LT      
Sbjct: 125 TAEMFTASSVFVNGKLKVDYAGGCAYLDENELHLTPIEYKLLCLLSKNVGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    + +V  + VF+  LRKKL        YI+T  G GY
Sbjct: 185 NIWGRSWDNDVASLRVFMATLRKKLEPTEESPQYIQTHIGVGY 227


>gi|260431669|ref|ZP_05785640.1| transcriptional regulatory protein TctD [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260415497|gb|EEX08756.1| transcriptional regulatory protein TctD [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 222

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI +IED++ LA++I   L+       V   G  G    +    D ++LD+ L    G 
Sbjct: 1   MRIAIIEDNEPLANAIAYRLRDRGHAADVLQDGSGGDAFLRQEGADLVVLDINLPGTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRA+R     TPV +L+  S + D+V+GL SGADDY+ KPF  +EL ARIRA+ RR  
Sbjct: 61  EVLRAMRARGDGTPVILLTARSELSDRVKGLDSGADDYLVKPFEMDELEARIRALSRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++   G L+ +   + V  +G  + +  +E  ++E L  R    ++K    +H+Y 
Sbjct: 121 LDFGAVQTIGALAFDRATRQVLAEGAPLDIPRRETAVLECLLDRAGRIVSKAQLTDHVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+  + +LRK+L  AA G   I+T  G GY+L   A
Sbjct: 181 VGADVDDTAIEPHVSRLRKRL--AAHGV-VIKTARGLGYMLETTA 222


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 20/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           ++L+IEDD+ + +++ ++L+++ + +     GE+G++  KF   FD +I+D+ + +I G 
Sbjct: 3   KLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQ--KFDSTFDLLIIDIMMPNISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  K   P+  L+  S   DK+  L +G DDY+ KPF+  EL+ARI+A++RR R
Sbjct: 61  EVCRRIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119

Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +         A S I    L++      V   G ++ LT KEYQ++ LL      T + 
Sbjct: 120 VYDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179

Query: 172 EMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++   +EP  +     I V I  LR KL    G  + I+TVWG+GY   E
Sbjct: 180 QNIFESVW---NEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|170694291|ref|ZP_02885445.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140714|gb|EDT08888.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALTQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R +   TPV IL+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLARFRQSNRHTPVIILTARDELNDRVQGLNSGADDYMLKPFEPTELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H    +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHGDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL +    +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLESC---RVEIVTVRGFGYLLQE 223


>gi|332284606|ref|YP_004416517.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
 gi|330428559|gb|AEC19893.1| two-component response regulatory protein [Pusillimonas sp. T7-7]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+ E + V V + G       K   FD +ILDL L  + G 
Sbjct: 1   MRILIAEDDSILADGLSRSLRYEGYAVDVVNDGSSADSALKLQSFDLLILDLDLPQLHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +   PV IL+   S+E +V+GL  GADDY++KPF   EL AR+RA+ RRS 
Sbjct: 61  AVLRLLRQRQTPLPVLILTAADSVEQRVKGLDLGADDYMAKPFALTELEARVRALTRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++    LS +L+ +   +    + L+ +E  ++E+   R    ++K   ++ L  
Sbjct: 121 GIGATVLRYKQLSFDLNGRIAHISDQPLELSARETSLLEIFLSRCGRMISKNQLVDLLCQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227
             +E     I+V+I +LRKK+   +G +  I TV G GY L  EN  D
Sbjct: 181 WGEEVTPNAIEVYIHRLRKKI-EPSGAR--IVTVRGLGYCLEPENRSD 225


>gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+A+  ++   LK E F V         +E  +  EF  ++LD+ L    G+  
Sbjct: 6   VLLVEDDQAIVENLTGFLKEEGFCVTAVSGQAAAMEALEAREFALVLLDVTLAQGNGYST 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A++ ++   PV  L+ +      V GL  GADDYISKPF   ELV+R+R ++RRS G 
Sbjct: 66  CTAIK-SRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRS-GR 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +Q ++  G+LSV++   TVE +G  I+L+  EY+++ +    +   LT+ + L  ++D  
Sbjct: 124 SQRVMKIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAA 183

Query: 183 DE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E      + V+I +LR+K+ +       + TV G GY L
Sbjct: 184 GEFVNDNTLTVYIKRLREKIEDDPANPQILLTVRGVGYRL 223


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 129/238 (54%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIPG 59
           ILL++D++ +   ++  LK E    Y TDL EDG   ++L +   +D I+LD+ L  + G
Sbjct: 5   ILLVDDEEHILRLLDYHLKKEG---YETDLAEDGRTALKLAESEHYDFILLDIMLPQLDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            EV + +R     TP+ ++S      DKV  L+ GADDY++KPF+  EL+AR++AI+RR 
Sbjct: 62  IEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRRT 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  + G  +       L +  +   V      ++LT KE++++  L    N TLT+
Sbjct: 122 EKTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           E  L  ++      E +++DV I KLR+K+ +      +I+T+ G GY  +E  KDET
Sbjct: 182 ERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKFKE-LKDET 238


>gi|167751398|ref|ZP_02423525.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
 gi|167655644|gb|EDR99773.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
          Length = 227

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L  ED+ ++A ++  +L   N+ V     G D ++  +  ++D IILD+ +    G 
Sbjct: 1   MKLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    +TP+ +L+  + +ED++ GL  GADDY+ KPF   EL++R+RA++RR  
Sbjct: 61  EVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++  G++S+N    + E++G    I L   EY+++ELL L K   L+ E  L  +
Sbjct: 121 RFTPDIMTFGNVSLN--PSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTEDILVKV 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E   + V+I  +RK+L+ A G    I      GY L
Sbjct: 179 WGYESDAESGAVWVYISYVRKRLA-AIGADIEIRAKRSVGYTL 220


>gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC
           BAA-895]
 gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +++N       + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     I+V +  LR+KL     G ++I TV G GY L
Sbjct: 181 WDEDVSSNTIEVHVHHLRRKL-----GSDFIRTVHGIGYTL 216


>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL ED+  L   I   L+   F V     G + + L    +   IILDL +  + GF
Sbjct: 6   VRVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R   I  P+ +L+ + +  DKV     GADDY+ KPF  +EL+ARIRA++RRS+
Sbjct: 66  EVCQRIREQSI-VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQ 124

Query: 121 GHAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q         G+L ++L+A +V   G  + LT  E+ ++  L    N  LT  M L 
Sbjct: 125 WSVQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           H++  +   E + + V+I +LR+KL        ++ T  G GY
Sbjct: 185 HVWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGY 227


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  +   L  E F V   D G  G E      +D I+LDL L  + G +
Sbjct: 4   RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   ++TP+ IL+  +   + V+GL+SGADDYI+KPF   EL+AR+ A++RR+ G
Sbjct: 64  ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S I  G+L +  +   V + G  I L  KE++++  LS +    LT++
Sbjct: 124 GDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K      
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-DSVHIDSIRGVGYKLVVNKKRSASHL 242

Query: 233 L 233
           L
Sbjct: 243 L 243


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 VSVDNQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + +K+E + VY    G+D +++      D  ILD+ + D+ G  +
Sbjct: 4   VLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDGITL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ +LS      DKV GL +GADDY++KPFN  EL+AR++A +RR +  
Sbjct: 64  CMEIR-KKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122

Query: 121 -GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               QS I+   DL++N+D   V +    I LT KE+ ++ELL   K    + E   + L
Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +  ++  +I V I  +R K+        YI+TVWG GY
Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGY 224


>gi|160935360|ref|ZP_02082742.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441718|gb|EDP19418.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 113/202 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K LA ++  M+    +   V+  G +G+EL +   +DAI+LD+ L  + G+
Sbjct: 8   MRILVIEDEKRLAFTLADMIGGAGYYTDVSHDGAEGLELAQTGIYDAIVLDVMLPGMDGY 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  +  TPV +L+  S + D+VRGL +GAD Y++KPF  EE +A +R ++RR  
Sbjct: 68  AVLKNLRSTRNMTPVLMLTARSELSDRVRGLDAGADYYLTKPFATEEFLACLRTVLRRHG 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GDL +      +    + + L+ KE +++ LL    +  L KE  L  ++ 
Sbjct: 128 DIAPDTLTFGDLILTPSMPELICGENSVSLSAKELELMSLLIQNSSQYLPKETLLLKVWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
                    ++ +I  LRKKLS
Sbjct: 188 YDANVNSNSVEAYISFLRKKLS 209


>gi|150392407|ref|YP_001322456.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952269|gb|ABR50797.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 218

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 126/219 (57%), Gaps = 8/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++++   I + L+           G + +E  K   +  IILD+ L ++ GF +
Sbjct: 4   ILIVEDEQSINDLIAMNLELVGHTSTQVYEGNEALEFIKQNTYSLIILDIMLPELDGFSL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +     + PV  L+ M ++ D+V+GL+ GADDYI KPF   EL+ARI A++RR++  
Sbjct: 64  MEYV---PENIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQ-R 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + ++       VNL+++ V V G  I LT +EY+++E+L   +N  L++E  L   ++  
Sbjct: 120 SLNIFSLDSTVVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAWEYD 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +DV I KLRKKL+     +N I+TV+  GY L
Sbjct: 180 YFGETRTVDVHIQKLRKKLN----WENKIKTVYKMGYRL 214


>gi|15923060|ref|NP_370594.1| transcription regulator protein kdpE [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925773|ref|NP_373306.1| hypothetical protein SA0066 [Staphylococcus aureus subsp. aureus
           N315]
 gi|49482312|ref|YP_039536.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57865946|ref|YP_190033.1| DNA-binding response regulator KdeP [Staphylococcus epidermidis
           RP62A]
 gi|148266502|ref|YP_001245445.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392536|ref|YP_001315211.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156978400|ref|YP_001440659.1| hypothetical protein SAHV_0069 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|254663999|ref|ZP_05143471.1| hypothetical protein SauraM_00335 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794422|ref|ZP_05643401.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|258407615|ref|ZP_05680751.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|258419892|ref|ZP_05682854.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|258445150|ref|ZP_05693387.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|258447754|ref|ZP_05695893.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|258452216|ref|ZP_05700230.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258455622|ref|ZP_05703577.1| transcription regulator protein kdpE [Staphylococcus aureus A5937]
 gi|282928323|ref|ZP_06335926.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus A10102]
 gi|295405345|ref|ZP_06815155.1| two-component system [Staphylococcus aureus A8819]
 gi|295426618|ref|ZP_06819257.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297244682|ref|ZP_06928562.1| two-component system [Staphylococcus aureus A8796]
 gi|5360818|dbj|BAA82188.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus
           aureus]
 gi|13699985|dbj|BAB41284.1| kdpE(SCCmec) [Staphylococcus aureus subsp. aureus N315]
 gi|14245837|dbj|BAB56232.1| transcription regulator protein kdpE [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|49240441|emb|CAG39095.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57636604|gb|AAW53392.1| DNA-binding response regulator KdeP [Staphylococcus epidermidis
           RP62A]
 gi|147739571|gb|ABQ47869.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944988|gb|ABR50924.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156720535|dbj|BAF76952.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257788394|gb|EEV26734.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|257840840|gb|EEV65297.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|257844174|gb|EEV68561.1| two component transcriptional regulator [Staphylococcus aureus
           A9719]
 gi|257856058|gb|EEV78977.1| response regulator receiver [Staphylococcus aureus A6300]
 gi|257859036|gb|EEV81900.1| response regulator receiver [Staphylococcus aureus A6224]
 gi|257860053|gb|EEV82887.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257861834|gb|EEV84607.1| transcription regulator protein kdpE [Staphylococcus aureus A5937]
 gi|282589907|gb|EFB94990.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Staphylococcus aureus A10102]
 gi|285815795|gb|ADC36282.1| DNA-binding response regulator KdpE [Staphylococcus aureus
           04-02981]
 gi|294969420|gb|EFG45439.1| two-component system [Staphylococcus aureus A8819]
 gi|295129070|gb|EFG58697.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297178199|gb|EFH37446.1| two-component system [Staphylococcus aureus A8796]
 gi|315129045|gb|EFT85041.1| hypothetical protein CGSSa03_13532 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+A+ H I++ L    + V     G++     +  + D I+LDLGL DI G  +
Sbjct: 5   LLVVEDDEAILHLIDVALTMNYYKVVTAKTGKEADFRLRTEQPDIILLDLGLPDIDGLSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++  R   + TP+ ++S  +  +  V  L  GA+DY++KPFN +EL ARIR  +R SR  
Sbjct: 65  IQQFR-DFVDTPIIVISARTEEQTIVEVLDRGANDYMTKPFNIDELRARIRVALRMSRST 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS    G L+++ DAK+V V    +HLT  E+Q++ +L       LT ++ L  LY 
Sbjct: 124 ETIQSRFTNGPLTIDFDAKSVLVNEQSVHLTPNEFQLLTILCHHVGKVLTYQVLLKSLYG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             +  E+  + V +  LRKKL+
Sbjct: 184 YVNHTEMAALRVHMASLRKKLN 205


>gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 236

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E ++V   D+ +DG+E  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKADPSSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   IS P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  KKDGIEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRS      HA + I    VT  L ++ D + V      +  LT KE+ ++  ++ +  
Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|170690183|ref|ZP_02881350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170144618|gb|EDT12779.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ S+   L +    V     GE    + +  ++  +ILD+GL  + G 
Sbjct: 9   MRVLLVEDNPILSRSLTDALTNAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV IL+   S+E++VRGL  GADDY++KPF   EL AR RA++RR  
Sbjct: 69  EVLRRLRARRNAVPVLILTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G L  +   +   + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 129 GQEASVAQCGTLVYDSVDRGFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL  ++ G   I T+ G GY+L
Sbjct: 189 LDESVNADAIEIYVYRLRKKLERSSVG---IVTLRGLGYLL 226


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 7   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 67  ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 126 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 185

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 186 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 230


>gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
 gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
          Length = 236

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E + V   D+ +DGIE  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWEV---DIAKDGIEAVEMFKAHPDSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  RKDGMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQS----LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRSR     HA +     ++T  L ++ D + V    + +  LT KE+ ++  ++ +  
Sbjct: 119 YRRSRIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|71066151|ref|YP_264878.1| two component heavy metal response transcriptional regulator
           [Psychrobacter arcticus 273-4]
 gi|71039136|gb|AAZ19444.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L   I+  L    F V     G DG       EF  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEQKLGEYIKKGLTETGFIVDHHMTGLDGYHALMTEEFSVVLMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI+ ++RR+ 
Sbjct: 61  ELVQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKNLLRRAN 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  ++I   DL +++  +TV      I LT KE+ +++L   R+   L + +  + +
Sbjct: 121 QSDYKSTVIHIADLKMDIAKRTVYRGETPIKLTAKEFTLLQLFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   + +  IIDV I +LR K+ +    K  I TV G GY L  ++
Sbjct: 181 WDINFDSDTNIIDVAIRRLRIKIDDGFDIK-LIHTVRGMGYRLENSS 226


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  I G 
Sbjct: 4   VKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGISGI 63

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR A    + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR
Sbjct: 64  EVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRR 123

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R   A   +V  D+ ++     V   G  + L   E+++++          ++E  L+ 
Sbjct: 124 VRPALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E + +DV I +LRK + N     + I TV   GY L
Sbjct: 184 VWGHDSDIESRTVDVHIRRLRKAI-NIGDRPDIIRTVRSAGYSL 226


>gi|328725269|ref|XP_003248407.1| PREDICTED: transcriptional activator protein CopR-like, partial
           [Acyrthosiphon pisum]
          Length = 214

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/214 (35%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
           +  +F V V   G DG+ L   +++D  ILD+ L  I G+++L   R A  +TPV  L+ 
Sbjct: 1   RENDFVVDVAANGIDGLHLLLTHDYDLAILDVMLPGINGWKLLEMARQADRATPVMFLTA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-----QSLIVTGDLSVN 135
              +ED+V+GL+ GA+DY+ KPF+  EL+AR R I+RR    A     +S +  G L ++
Sbjct: 61  RDDVEDRVKGLELGAEDYLIKPFSFSELLARARVILRRQTPSAVLSNDESQLQVGGLVLD 120

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
                V  +G+RI LT KE+ ++ LL  R    L++ +    ++D   +PE  +IDV I 
Sbjct: 121 FVKHKVTREGNRIELTQKEFLLLSLLMRRSGEVLSRTVIAEQVWDMNFDPETNVIDVAIR 180

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +LR K+ +    K  + T+ G GYVL E    +T
Sbjct: 181 RLRGKIDDNYAVK-LLHTIRGAGYVLEEKEHADT 213


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL  ++E  LK + + V V   G   ++L + ++ + I+LD+ L  + GFE
Sbjct: 4   KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR  +++TPV +L+  +   D+V GL+ GADDY++KPF+  EL+AR++A++RR R 
Sbjct: 64  LCRRLR-QEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                          ++  +++G+L +NL  + V + G  + +  KE++++  L   +  
Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+++  L  L+      + + +DV I  LR+K+         I TV G GY
Sbjct: 183 VLSRDYLLKELWGWDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGY 234


>gi|293607374|ref|ZP_06689713.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814218|gb|EFF73360.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC
           43553]
          Length = 222

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILL+EDD  L  ++   L ++   V +V  L +  + L   + F A++LDLGL +  G
Sbjct: 1   MRILLVEDDPMLGDALRAGLSNDGATVHWVRALSDAQLALVD-HGFHAVLLDLGLPEGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ALR    +TPV I++    + ++++GL +GADDY+ KPF  +EL+AR+RA++RRS
Sbjct: 60  LTLLKALRGRFDTTPVLIITARDRLSERIQGLDAGADDYLVKPFQLDELLARLRAVLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   D+ +   ++ V   G  + L+  EY  +  L  R   T++++     +Y
Sbjct: 120 SNSVVSALRCRDVVLEPASRLVRQDGREVSLSAHEYHTLLALMQRMGHTVSRDQLEVAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V+I +LR+KL     G   IET  G GY
Sbjct: 180 GSSGTIESNTVAVYIHQLRRKL-----GDGLIETQHGLGY 214


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++ ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +   L  E + V V D G  G  L   + +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + LR+     P+  L+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EMCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S +   +L ++++ +     G  I L+ KE Q++E         LT +    
Sbjct: 121 TLESPAANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQLLTHQQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           HL+   D+P   ++   I  LR+K+ +    +  I TV+ +GY
Sbjct: 181 HLWADSDQPSSNVLAAQIRLLRRKIEDPK-ERQLIHTVYRKGY 222


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V     G++G +L    + D I+LDL L  + G E
Sbjct: 4   KILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             ++          +  G L +         +   + LT KE++++  L+  K+  LT++
Sbjct: 124 VPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEE 234


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q L + GDL +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 VSVDNQESDEKKTQPLQI-GDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4]
          Length = 252

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD +A A+  +   ++     + +D GE G+ +     +D +I+D  L    G
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREAGIMADHASD-GEAGLFMGCENTYDVMIIDRMLPRRDG 86

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  LR   I+TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR 
Sbjct: 87  LSVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 146

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L H+
Sbjct: 147 GTPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHV 206

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR K+      +  ++TV G GY++++ +
Sbjct: 207 WDYHFDPQTNVIDVHVSRLRSKIEKDF-DRPLLKTVRGAGYMIKDES 252


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 217


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ + +L    E   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVR-KDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ + G  I LT  E+ ++ +L+   N   + +  
Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ LK E ++V     GE+ + + K    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 241

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     ++ DL   GE+G+ + +  ++D +++D  L   
Sbjct: 16  MRLLIIEDDR---ESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKR 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 73  DGLSVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++     DL ++  +  V   G  + L  +E++++E L       +T+ M L 
Sbjct: 133 RHGGPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+         + T+ G GY++R+  +
Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-DHPLLHTIRGAGYMIRDGLR 241


>gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
 gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++   +   F V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+  GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  SVLKRLRDTH-ATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LR K+ +A   K  I TV G GY L
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYAL 219


>gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IEDD   A  +   L            G  G+++    ++D +I+D  L  + G 
Sbjct: 2   LRILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRMLPKMDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR     TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI A+ RR +
Sbjct: 62  SVIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPK 121

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +Q  +    GDL+++  A +       I L  +E++++E L       +T+ M L ++
Sbjct: 122 SASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV I +LR K+         + T+ G GY +R+ A
Sbjct: 182 WEYHFDPQTNVIDVHISRLRGKIDKGF-DTPLLHTIRGAGYTIRDAA 227


>gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
 gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
          Length = 228

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 11/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +  +++  L+ E + V+V   G +G+ + +  + D +ILDL L D+ G 
Sbjct: 1   MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLMLPDMKGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R A     + +L+   S+E ++ GL  GADDY+ KPF+  ELVARI+ +VRR  
Sbjct: 61  EICQQIR-AISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRIN 119

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q++ +  D  L ++   + V+VQ   +  T  E+ ++ LL   K   LT+E  +N +
Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 180 LGFDFNGYD----RTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGY 220


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +  ++   L+SE + V     G   +     +   AI+LDL +  + G 
Sbjct: 1   MRVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   ++ D++ GL +GADDY+ KPF+ +EL+AR+RA++RRS 
Sbjct: 61  TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +++   DL+V+  A  V  +GHR + L+  EY ++E+L       + + + +  ++
Sbjct: 121 PGDDTVLRCADLAVDTGAHRVR-RGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                P    ++V++  LR+KL  A G    + TV G GY L E+
Sbjct: 180 GQDFGPSSNSLEVYVRYLRRKL-EAGGEPRLVHTVRGVGYRLDES 223


>gi|92116995|ref|YP_576724.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799889|gb|ABE62264.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 230

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESADYLVKAFREVGHVAELASDGEEGLSLADGGDYDVLVIDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 61  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRRG 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+  +   GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 121 GPAEETVYRVGDLELDRLSHRVVRGEEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+      +  + T+ G GY++R+ 
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMIRDG 224


>gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 223

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA      L    + V + + G     + +   +D ++LD+GL  + GF
Sbjct: 1   MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    S PV I+S    ++ ++ GL  GADD++ KPF   EL AR RA++RR  
Sbjct: 61  EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+L A+   V G  I L+ +E+ ++  L       + KE  +  L D
Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +  +  ++V+I +LR KL +A G   +I TV G GY+L
Sbjct: 181 WKTDISLNAVEVYISRLRSKL-DAHG--IHIRTVRGFGYLL 218


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RIL+ +DDK +   ++  L+ E   +Y+ D   +G E LC F +  ++ +ILDL +  +
Sbjct: 4   IRILIADDDKEIRDLLKRYLERE---LYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++R
Sbjct: 61  DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +    ++ +    L+++    TV   G  I+LTGKE ++++  +       T
Sbjct: 120 RFLVLGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           K     +++D     +   + V I KLRKK+   +    +I+TVWG GY
Sbjct: 180 KTQLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + ++L +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E    +E + V  T  G++ + +      D +ILD  +    G E
Sbjct: 5   KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL +GADDY+ KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  V  +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + E++ +DV I +LRK + +  G  + I TV   GY L  N
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-DVPGADDPIRTVRSAGYALETN 229


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIP 58
           +IL+++D+  +    EL+ +   +  YV +   DG   + L     FD +ILD+ +  + 
Sbjct: 74  KILIVDDEPRIR---ELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMD 130

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G   LR +R   I+TPV IL+      DK+ GL+ GADDY+ KPF+  ELVAR++A++ R
Sbjct: 131 GMTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190

Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   +++    +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L
Sbjct: 191 TMPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKIL 250

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +++     E + +D  +  LR  L    G   YI TVWG GY    +A
Sbjct: 251 QKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 297


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  I   LK E F       G  G+ L +  + DAI+LDL L  I G  
Sbjct: 4   KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R ++   A  +TPV I++      D+V GL+ GADDYI KPF+ +E+VAR++A++RR 
Sbjct: 64  VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR- 122

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R   Q L   +  G +++++       +G    LT KE+ ++  L       L +E  LN
Sbjct: 123 RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++    E   + +DV I +LRKK+  +A    ++ETV   GY  RE  K
Sbjct: 183 TVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229


>gi|297560594|ref|YP_003679568.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296845042|gb|ADH67062.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 254

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  ++E+ L++  +  Y+ D GE  + L   +  D ++LDLGL+ + G EV
Sbjct: 15  VLVVDDDPLIRRTLEVNLRARGYTAYLADTGEHALRLVARHHPDLLLLDLGLSGMDGLEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           LR LR      PV +LSG  +   KV+ L  GADDY+ KPF  +EL AR+RA +RRS   
Sbjct: 75  LRGLR-GWTDVPVVVLSGRDTEPMKVQALDLGADDYVIKPFGMDELFARVRAAMRRSAVP 133

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ + T D +V+L AK V   G  + LT +++ ++E+L+   +  +T +  LN ++  
Sbjct: 134 EYEAAVDTADFTVDLAAKQVLRGGEPVRLTPRQWHIVEVLARNPDRLVTHKHLLNEVWGP 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E   + VF+ K+R++L        Y  T  G GY  R 
Sbjct: 194 AYGRETNYLRVFMTKIRQRLEPDPPRPRYFLTEPGLGYRFRP 235


>gi|163784708|ref|ZP_02179524.1| Two-component response regulator czcR [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159880026|gb|EDP73714.1| Two-component response regulator czcR [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 196

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 117/197 (59%), Gaps = 7/197 (3%)

Query: 26  NVYVTDL---GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           N ++TD    GE+ ++  + Y+++ IILD+ L  I GF +   +R   I TP+ +L+  S
Sbjct: 1   NNFLTDSAFDGEEALDYIENYDYNIIILDIMLPKIDGFRLCEIIRKKNIQTPILMLTAKS 60

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVE 142
           + +DKV+GL  GADDY+SKPF+ EEL+AR++A++RRS  +  +++   + + +++ + V 
Sbjct: 61  ATQDKVKGLNIGADDYLSKPFDMEELIARVKALIRRSSTNKSNVLKINNYTFDIENRIVY 120

Query: 143 VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202
             G +I LT K + +++ L + +   ++ +  +N  +D  D P  + +   I  LRK L 
Sbjct: 121 KNGKKIELTPKLFCILQQLLINRGKIVSYDALMNRCWDITDYPTKETVRANIKLLRKLLE 180

Query: 203 NAAGGKNYIETVWGRGY 219
           +    K+ I+ + G GY
Sbjct: 181 D----KDLIKNIPGVGY 193


>gi|160935144|ref|ZP_02082527.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441875|gb|EDP19572.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK++ + +++ LK+  +   + D G  GI L      D I+LDLGL DI G EV
Sbjct: 6   ILVIEDDKSIQNFMKISLKTRGYAYILADNGLSGISLFYADHPDLILLDLGLPDIDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR +R  K   P+ ++S      +K+  L  GADDY++KPF+ EEL+ARIR  +R    +
Sbjct: 66  LRQIR-QKSDVPIIVVSARGQEREKISALDQGADDYVTKPFSAEELLARIRVGLRHKSST 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H +         ++ + + + V    +HLT  EY+M+ LL       LT       ++
Sbjct: 125 MNHQEQEFCLDYFRLDFEKRKLYVHDQEVHLTPLEYKMMVLLVNNSGKVLTHHYIQQEVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + + VF+  +R+K+ +      +I T  G GY
Sbjct: 185 GYDTTDDYQSLRVFMANIRRKIEDNTANPRFILTEVGVGY 224


>gi|17158742|ref|NP_478253.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134691|dbj|BAB77249.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 245

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 122/247 (49%), Gaps = 22/247 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI-----ILDLGLT 55
           M++LL+ED+  L  SI+  L  E    YV D   DG E   + E D       I D  L 
Sbjct: 1   MKVLLVEDEPDLGASIQRKLSKEK---YVVDWVLDGNEAWIYLEDDLTQYTLAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LR    + PV +L+   S+ DKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GMSGIELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSL--------IVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLS 162
            RRS     SL        +  G L ++    T+  Q        I+LT KE+Q++E L 
Sbjct: 118 QRRSALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLM 177

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R NT +T++  LNHLY    E    ++   I  LR+KLS   G    IETV   GY   
Sbjct: 178 KRPNTVITRDQILNHLYAFSAERVSNVVAAQIRLLRRKLSE-YGCDGLIETVPSMGYRFN 236

Query: 223 ENAKDET 229
               D T
Sbjct: 237 PGNADST 243


>gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I + +D+  + + I+  L  E ++V     G   +E       D +++D+ + +I GF +
Sbjct: 7   IYIADDEINICNIIKSFLVKEGYDVETFTDGRSILEAFNKKPADLLVIDIMMPEIDGFSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  + S P+ I+S   +  DK+ GL  G+DDY++KPF+  EL+ARI++I RR    
Sbjct: 67  CSTIR-RQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIELD 125

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + H  S+  I  GD+ +N+D K  E  G  I LTG E+ ++  L+  KN  +++   L+ 
Sbjct: 126 KMHNDSVREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E +  D  I +LRKKLS+ +G    IETVWG G+ + E
Sbjct: 186 VWGFENYVETRATDDTIKRLRKKLSD-SGSSLKIETVWGFGFKVNE 230


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 125/241 (51%), Gaps = 10/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  +   L  E F V   D G  G E      +D I+LDL L  + G +
Sbjct: 4   RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   ++TP+ IL+  +   + V+GL+SGADDYI+KPF   EL+AR+ A++RR+ G
Sbjct: 64  ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S I  G+L +  +   V + G  I L  KE++++  LS +    LT++
Sbjct: 124 GDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K      
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKL-ELDPDSVHIDSIRGVGYKLVVNKKRSASHL 242

Query: 233 L 233
           L
Sbjct: 243 L 243


>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 244

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A    L L+ + F V V   G   +   +     A++LD+GL+ + G E+
Sbjct: 27  VLVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGLSGMDGIEI 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR A   TPV  ++      D++ GL+ GADDY++KPF+  EL AR+R ++RR+ G 
Sbjct: 87  CRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASGS 146

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + +++  +        + LT  E+ ++  L       L+++  L+ ++   
Sbjct: 147 PATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWGYA 206

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                + +DV + +LR KL    G  + I TV G GY 
Sbjct: 207 AAAGTRTVDVHVAQLRAKL----GDDSPIRTVRGIGYA 240


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  ++  L+   + V V   G+   EL     FDAI+LDL L  + G  
Sbjct: 3   KILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  KISTPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H +S     I   +L ++ + K V      + LT +EY+++   S R    + +E  L 
Sbjct: 123 DHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E +++D+ I  LR+K+         ++TV G GY +
Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGYTM 227


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 66  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + ++
Sbjct: 124 QYLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 222


>gi|241759488|ref|ZP_04757592.1| DNA-binding response regulator [Neisseria flavescens SK114]
 gi|241320270|gb|EER56603.1| DNA-binding response regulator [Neisseria flavescens SK114]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   LK   + V     G +   +     +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAQAVSANLKDTGYAVDWVSRGSEVAAVVAAQAYDLLLLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R    + PV I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  DVLAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G AQ+L+  G +++N      EV G    I L+ KE+ +++ L LR    L++    + +
Sbjct: 121 GQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y   +E E   +D  I  LRKKL     GK  I+ V G G+++ +N
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEAIQNVRGVGWLVAQN 221


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-EKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227


>gi|109453312|gb|ABG34136.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453316|gb|ABG34138.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453318|gb|ABG34139.1| PhoP [Salmonella enterica subsp. diarizonae]
          Length = 213

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 6/206 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN 203
           LY   +  E   IDV + +LRKK+  
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKIQT 203


>gi|111020343|ref|YP_703315.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110819873|gb|ABG95157.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 222

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI ++EDD  + ++I   L  +         G +   L    E D ++LDLGL D  G 
Sbjct: 4   MRIAVVEDDDGVGNAIVAGLTRQAHQPVRMKFGSE--LLLHHGEVDFVLLDLGLPDRDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR LR    + PV IL+        VRGL+ GADDY+ KP    EL ARI  + RRS 
Sbjct: 62  EVLRQLRQVS-AVPVIILTARDDERSVVRGLRGGADDYLVKPARMSELFARIEVVRRRSM 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A   +VTGD+ V+LD++TV V G  + LT KE+ ++E+L       ++++  ++ 
Sbjct: 121 AVEGGAPREVVTGDVRVDLDSRTVTVAGTEVDLTSKEFALLEILLENPGAAVSRQQLMDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +DV I  LR KL         I T+ G GY
Sbjct: 181 VWGDAFVAVSRSLDVHIGTLRAKLDR----PGLISTIRGFGY 218


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|210623054|ref|ZP_03293541.1| hypothetical protein CLOHIR_01491 [Clostridium hiranonis DSM 13275]
 gi|210153857|gb|EEA84863.1| hypothetical protein CLOHIR_01491 [Clostridium hiranonis DSM 13275]
          Length = 237

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I   L ++++ V  +  G++ ++       D ++LDLGL DI G +V
Sbjct: 6   ILVVEDDSTIRKFICTALTTQDYEVIESSTGKEAVQNAIAKSPDVMLLDLGLEDIDGIDV 65

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +R  +IS  P+ ++S      +KV    +GADDYI+KPF+  EL+AR+R  +R    
Sbjct: 66  IKTVR--QISDLPIIVVSAREQDREKVEAFDTGADDYITKPFSIVELLARVRVALRHKEN 123

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +          +     GDL ++ D + V V G  IHLT  EY+++ LL+      LT 
Sbjct: 124 KSVDISMPKEEKEDTFSVGDLFIDYDKRKVTVSGENIHLTPIEYEILSLLARNHGKVLTH 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  ++ G    E K + VF+  +R+K+        YI T  G GY L +
Sbjct: 184 NYIIKKIWGGVIGGETKSLRVFMATIRRKIEKQPANPQYIMTEVGVGYRLND 235


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  ++  L+  ++   + + GE+ + L      D ++LD+ L  I GFEV
Sbjct: 6   ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  ++    P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI++R R
Sbjct: 66  CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              Q    ++V   L V++   +V++ G  I LT  E++++ +L  R+    ++E  L+ 
Sbjct: 126 RGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D       + ID  I +LR+KL        YI+TV G GY L E+ +
Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KYIKTVRGLGYKLEESGE 231


>gi|299139321|ref|ZP_07032496.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598590|gb|EFI54753.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 235

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A ++   +K+  ++V V   GE+G  L        ++LDL L    G E
Sbjct: 9   RVLVVEDDRKMADALVSGIKAAGYDVSVARTGEEGFFLVHKLFPHLLVLDLHLPQRNGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R   +   + IL+  ++ ED+V GL +GADDY+ KPF+  EL+ARI +++RR   
Sbjct: 69  ILQQIRAQALDIRILILTSNNTPEDRVTGLNAGADDYLGKPFSFPELLARIGSLLRRMPL 128

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            A + L+   DL+++ +++T      R+ LT +E+ ++  L+  +   +++EM    ++ 
Sbjct: 129 PASAGLLRIADLALDTESRTASRSEVRLDLTTREFDLLLYLAENRGRAVSREMLAKDVWK 188

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + R  P   +IDV + +LR+K+ +    K  + T+ G G++LRE
Sbjct: 189 ENSRFTPLDNVIDVQMTRLRRKVDDPFTTK-LLHTIRGVGFILRE 232


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           ++L+++DD  +   +   L  E F V V    EDG  L +       D I+LDL +    
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV I +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A  I + L+  N ++   D G+  ++L     +D I+LDL L  + G +
Sbjct: 23  RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR     TP+ +L+  SS  D+V GL+ GADDY+SKPF+  EL AR +A++RR+R 
Sbjct: 83  ICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTRM 142

Query: 121 ------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                       G A+ L + G   +      V + G RI LT +E+ ++   + +    
Sbjct: 143 NRHQENAELEQNGAAEPLKL-GPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRV 201

Query: 169 LTKEMFLNHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +   L+ ++  G D  E   ++  I +LR K+    G   Y+ TVWG GY
Sbjct: 202 FRRSELLDEVWGYGHDGYE-HTVNTHINRLRGKIETDPGNPQYVNTVWGVGY 252


>gi|323143646|ref|ZP_08078320.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066]
 gi|322416579|gb|EFY07239.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K L+++I   L SEN+        E+       Y++D ++LDL L    G 
Sbjct: 1   MKLLIIEDEKELSNNIVTYLSSENYVCEQAFTYEEAQIKLDLYDYDCVLLDLMLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR +R       V I+S   S++DKV+GL+ GADDY+ KPF+  EL  RI AI+RR  
Sbjct: 61  DILRDIRRRHNPAGVIIVSAKDSLDDKVKGLEIGADDYLPKPFHLAELSMRIYAIIRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH--- 177
             + + + + ++ ++L  KTV++    I LT  EY+++      KN  ++K     H   
Sbjct: 121 FASNNTLYSNNIEIDLLGKTVKINDQSILLTRTEYELLLFFISNKNRVVSKASIAEHISG 180

Query: 178 ----LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               L D  D      I   I  L+ KL+  +G K+ I+TV+G GY   EN
Sbjct: 181 EMSDLLDNHD-----FIYSHIKNLKAKLA-KSGIKSCIKTVYGAGYKWTEN 225


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +   + + L+ E   V     GE+G+       +D ++LDL L    G EV
Sbjct: 11  VLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TPV +++  +   D + GL++GADDY++KPF  EEL ARIRA+ RR+ G 
Sbjct: 71  CREIRRVS-TTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  IV GDL +      V   G  + LT  E+ ++  L+  +    ++E  L  ++  
Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + +++DV + +LRKK+         + TV G GY L E
Sbjct: 190 DYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRLPE 231


>gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +  +L++E F V   + G + + +        +ILD+ + ++ G E
Sbjct: 4   KILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ +R  +  TPV ILS   ++ DK  G     DDY+SKPF+  E+  R++A+++R R 
Sbjct: 64  FLKKIR-PQFDTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 AQ ++  G+L +N D+  +   G  I LT +E++++ +L       L++E  L 
Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D     ++ +I+VF+ +LR+K+        Y++TVWG GY
Sbjct: 183 LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGY 225


>gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 226

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 1   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V    DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+ +       ++TV G GY L
Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKI-DEGHPVPLLKTVRGLGYRL 222


>gi|325288450|ref|YP_004264631.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963851|gb|ADY54630.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 223

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/229 (36%), Positives = 130/229 (56%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA ++  +LK   + V +   GE G ++ +   +D IILD  L +  G 
Sbjct: 1   MRLLLVEDEEKLAEALAYILKKNKYGVDIAYDGETGQDMAESGVYDLIILDWMLPERDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR+ KI   + +L+   S++D+V GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  TVLKNLRLKKIDIAIILLTAKDSVQDRVIGLDSGADDYLVKPFASEELLARIRALSRR-- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG------HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +  L+    LS+  D     +QG       +I LT KE  +++LL       LTKE  
Sbjct: 119 -KSNVLLPNEKLSLG-DIVFDPLQGEIICGEEKIKLTLKESLLLDLLLRHAGQVLTKEQI 176

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++    E E   ++++I  LR+K+ + +     IET+ G GY L+E
Sbjct: 177 LDRVWGLDSEVETGTVELYIHYLRRKIPSDS---IRIETIRGIGYSLKE 222


>gi|320539293|ref|ZP_08038963.1| putative DNA-binding response regulator in two-component regulatory
           system with CpxA [Serratia symbiotica str. Tucson]
 gi|320030685|gb|EFW12694.1| putative DNA-binding response regulator in two-component regulatory
           system with CpxA [Serratia symbiotica str. Tucson]
          Length = 237

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FN+ V   GE  + L      + ++LD+ +    G +
Sbjct: 4   KILLVDDDRELTLLLKELLEMEGFNITVAHDGEQALSLLD-SSINLLLLDIMMPKKNGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 63  TLKELRQHH-HTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q         +L V G L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 122 NEQQQHVDTNAPTLDVDG-LQLNTGRQEASFDGKVLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +   R  P  + ID+ I  LR+KL N   G  + +T+ GRGY++
Sbjct: 181 LLSQEVLGKRLTPFDRAIDMHISNLRRKLPNRKDGHPWFKTLRGRGYLM 229


>gi|291617790|ref|YP_003520532.1| BasR [Pantoea ananatis LMG 20103]
 gi|291152820|gb|ADD77404.1| BasR [Pantoea ananatis LMG 20103]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 20/238 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L L+   +         DG+   +  E       +  ++LD+G
Sbjct: 1   MKILIVEDDALLLQGLVLALEGAGYVC-------DGVSTVRSAEAHLASGLYSLVVLDIG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G  +L+ LR  K   PV IL+   +IE+++ GL +GADDY+ KPF  +EL+ARIR
Sbjct: 54  LPDEDGLHLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR      S +  G+LS+++  + + +    + LT KE+ ++  L L+    + +E+
Sbjct: 114 ALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHREL 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
               +Y+  +EP    ++V I  LR K+     GK  I TV G GY L +  A++E+ 
Sbjct: 174 LYQDIYNFDNEPSTNTLEVHIHNLRDKV-----GKATIRTVRGFGYALSQPRAENESS 226


>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
 gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
          Length = 242

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+  +      ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
 gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K +   +   L    + V     GE+ +E     E+D I+LDL L  + G 
Sbjct: 14  LRLLIVEDEKQICDMVAKGLYDAGYEVDTCYDGEEALECILSEEYDLIVLDLNLPGVDGM 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 74  EILKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 + +G +  +   +    +G ++ LT KE  ++E L L     +++E  + H++D
Sbjct: 134 VQKDVCLESGGIKFDTIKREAYAKGEKVPLTRKENGILEYLLLNLGRPVSQEELMEHVWD 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LR+KL    G    +  V G GY +RE +
Sbjct: 194 ASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKV-GEGYKIREES 237


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           ++L+++DD  +   +   L  E F V V    EDG  L +       D I+LDL +    
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV I +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 13/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  I   L + N++V     G++ +++    + D ++LD+ L    GFEV
Sbjct: 10  ILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTKPDLVLLDIMLPGKDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R A    P+ +++      D+V GL+ GA+DYI+KP     LVARI+++++ +   
Sbjct: 70  CKEVR-ASYPNPILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLKNTAAA 128

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S I  G LS++  A++V V G  + L+  EY +  +L+      +++E  +  +
Sbjct: 129 DKSDVASTINIGGLSIDNTARSVHVNGVPLSLSSSEYNVFWVLANNAGEPISRENLIKAI 188

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               Y+G D    + ID+ + +LRKK+ + +     I TVWG+GY+L
Sbjct: 189 RKIQYNGYD----RSIDIVVSRLRKKIGDDSSAPTRIVTVWGKGYML 231


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE+G+EL    + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELLS-NDIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLR-ENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQSS 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G     I   D+ +    +    QG  + LT  E+ ++         TLTKE   
Sbjct: 122 ANGKQGKNSDCIEYQDIQIYPGKQEAYCQGELMVLTTTEFALLSHFVQNPGQTLTKEALS 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   R     + ID+ +  LRKKL     GK+ I+T+ GRGY+L E
Sbjct: 182 LDVLGKRLAAFDRAIDMHVSNLRKKLPERKDGKSRIKTLRGRGYLLVE 229


>gi|308234600|ref|ZP_07665337.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
          Length = 223

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K LA +I  +L   +++      G+ G+  C+   +DA I+D  L  + G 
Sbjct: 1   MNILVIEDEKNLADAIVRILTDAHYHAEAVYDGKSGLISCQSGLYDAAIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R +  S P+ IL+  +  +DKV GL +GADDY++KPF   EL+AR+RA+ RR  
Sbjct: 61  DIVKEVRRSGDSMPILILTARTFTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D S++L    +  + H +HL+GKE++++++L    +  ++K+  L +++ 
Sbjct: 121 DVIIEQMKFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++ ++  LRKKL+     K  I T+   GY L
Sbjct: 181 TTADASENSVEAYVSFLRKKLAY-VHSKVQITTLRMLGYRL 220


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL+  I ++LK+E F+      G+  ++     + D ++LDL L    G  
Sbjct: 4   RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKDGTV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ +L+  S   D V GL++GADDY+SKPF  +ELVARIR  +RR   
Sbjct: 64  VCREIR-RESGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ +    L++E+ L  ++  
Sbjct: 123 PEPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+ +       + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGY 220


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V     G++G EL    + D I+LDL L  + G E
Sbjct: 3   KILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+  
Sbjct: 63  VTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTES 122

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             ++          +  GDL +  ++         + LT KE++++  L+  K    +++
Sbjct: 123 RKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSRD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ +++     E +I+DV +  LR+K+        YI+T+ G GY + EN K
Sbjct: 183 QLLDAVWNYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKM-ENMK 235


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   +   L+ E ++V     G++ +E+        IILDL L D+ G EV
Sbjct: 4   ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  S   D++RGL  GADDY+ KPF+  ELVAR+RA++RR+  +
Sbjct: 64  CVQIR-KESRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGDY 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
           +     +  GDL+++++ K V   G  + +T  EY+++  L      T  +E  +  +  
Sbjct: 123 STLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVMG 182

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++G D    + ID  I  LR+K+        YI+TV+G GY
Sbjct: 183 FDFEGYD----RTIDTHIKNLRQKIEADPKQPEYIKTVYGLGY 221


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR 
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 118

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|154500840|ref|ZP_02038878.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
           29799]
 gi|150270340|gb|EDM97666.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+ ++       GE  +     +  + I+LDLGL D+ G EV
Sbjct: 6   ILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVMEASSHNPEIILLDLGLPDMDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IHKVR-SWSNMPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAAL 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +  ++   G L V+  A    + G  +HLT  EY+++ LL       LT      
Sbjct: 125 QIGTINTDAVFTNGKLKVDYAAGCAFLDGEELHLTPSEYKLLCLLCKNVGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+    + +V  + VF+  LRKKL        YI+T  G GY
Sbjct: 185 QLWGRSWDNDVASLRVFMATLRKKLEKEPQSPQYIQTHIGVGY 227


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 15/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEF--DAIILDLGLTDIP 58
           +IL+++DD+ +   I++ L+S     Y T+   DG      FYE+  D ++LD+ L  + 
Sbjct: 7   KILIVDDDENICEIIKMYLESSG---YSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R  +  TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR
Sbjct: 64  GIDVLKWIR-KECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L 
Sbjct: 123 YNVENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLC 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            ++ G D P + + +DV I +LR+KL    GG N+ IETVWG GY
Sbjct: 183 EVW-GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGY 223


>gi|152966752|ref|YP_001362536.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361269|gb|ABS04272.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 220

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+  +A  +E  L++  +   +   G    +L     FD +ILD+GL  + GF V
Sbjct: 4   ILIAEDETRIAAFVEKGLRANGYATTIATDGRTAHDLAGTGLFDLLILDIGLPVVDGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  + + PV IL+   ++ D V GL  GADDY++KPF  EEL+ARIR  +R  R  
Sbjct: 64  LRRLRAERHALPVIILTARDAVADTVAGLDGGADDYVTKPFRFEELLARIRLRLRDDRAA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +++  G+L ++L ++T  V G  + L+ +E+ + E         L++E  L+ ++   
Sbjct: 124 EVTVLAAGELQLDLLSRTAAVAGRSVALSSREFSLAEAFLRHPGQVLSREQLLSSVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +P   ++DV++  LRKKL     G    ET+ G GY L
Sbjct: 184 FDPGSNVVDVYVRYLRKKL-----GAGRFETIRGMGYRL 217


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I++    ++D ++LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQLREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  + G    I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGY 233


>gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   I+ ML+  +  V     G+D  E   + E+D +ILD  +    G 
Sbjct: 1   MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    LR +     + +L+   S+ED+V GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ ++
Sbjct: 121 QKIQHEVDEIGGFRLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +     ID ++  LRKKL  A+ G+  I+T+ G GY L
Sbjct: 181 GLESDVSSNNIDSYMKMLRKKLDAASEGEA-IKTIRGVGYKL 221


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 227

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  LK + + + + + G+DG+ L    ++  I+LD  L  + G 
Sbjct: 1   MRILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A   TPV ILS + S+ ++V+GL+ G+DDY+ KPF   EL+ RI  +++R  
Sbjct: 61  TVLTTLRNAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++    +++   DL + L ++ V    + + L  KE++++  L       +++ +    
Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D + +P+  +IDV + +LRKK+    G  + +ETV G GY + E  
Sbjct: 181 VWDYQFDPQTNVIDVHMARLRKKVE-FDGLPSLLETVRGVGYRMVEQG 227


>gi|121606759|ref|YP_984088.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595728|gb|ABM39167.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 230

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 13/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   L+   + V V           +   FD ++LDLGL D  G 
Sbjct: 1   MRILVVEDDAGIAVGLRTNLQQRGYAVDVCGTLASAWAALRSEPFDLVLLDLGLPDGEGG 60

Query: 61  EVLRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            +L  +R +  +        TP+ IL+    + D++ GL  GADDY+ KPF+ +EL AR+
Sbjct: 61  RLLERVRQSPSAAGSLPDTLTPILILTARDQVADRISGLNLGADDYLVKPFDLDELEARM 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA++RR+ G A  L+  GDL ++  A +V   G  + LT +E+ ++ LL   +   L+++
Sbjct: 121 RALLRRAAGRAHPLLAHGDLVIDPAAHSVLRAGQPVELTPREFALLLLLLESRGRVLSRQ 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                LY   D      ++V +  +R+KL     G++ I+TV G GY +
Sbjct: 181 QLEARLYSWDDGVGSNAVEVHVHHVRRKL-----GESLIQTVRGVGYFI 224


>gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 223

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  I      E  +V     G   +       +D +++D  L ++ G 
Sbjct: 1   MKILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR A+++TP   L+ +  +ED++ GL++G DDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L +++
Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +++  I +LR K+         I TV G GY
Sbjct: 181 DIHFDPGTNVVETHISRLRAKVDKPF-DHELIRTVRGAGY 219


>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
          Length = 267

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 38  KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 96

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 97  TLKELR-QQYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 155

Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       S  +  D L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 156 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 215

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 216 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLM 263


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +  GD+ +N+    V +    + LT +E+ ++ELL+  +   ++ E  
Sbjct: 124 MNGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I K+R+K+        Y++TVWG GY
Sbjct: 184 YERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGY 228


>gi|116878444|ref|YP_356197.2| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|114843080|gb|ABA88027.2| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +A  +   L+ E + V     GE  +EL  + +   +ILDL L  I G EV
Sbjct: 6   ILLVEDELHIARGLIFNLEQEGYRVIHVSSGEQALELAPWSQCLLVILDLMLPGISGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ IL+ +   +D++ GL++GADDY++KPF+  E + R+R +V RS  +
Sbjct: 66  CQQLRAQDPRLPILILTALGKEQDRIAGLEAGADDYLTKPFSLTEFLLRVRGMVNRSSWY 125

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+     GD +V L     E     I LT  E +M+++    + + LT+E  L  
Sbjct: 126 RSTPAAEECFRFGDNAVYLQDHRAETPRGDIDLTELEVRMLQIFFDHEGSILTREKLLAS 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + E + +D FI +LRK          +  TV G+GY
Sbjct: 186 VWGLAPDTETRTLDNFIVRLRKYFEPTPARPRHFLTVRGKGY 227


>gi|119775831|ref|YP_928571.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768331|gb|ABM00902.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 233

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/235 (33%), Positives = 127/235 (54%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA S++  L  E F V+    G+D  EL    +FD I+ D+ L    GFE
Sbjct: 6   QLLLIEDDYQLARSVKRFLTKEGFEVHHFVNGDDLAELIASNQFDLILCDVMLPGTNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + ++LR +  + P   ++ +S +ED+++G   GADDYI KP     LVARI+A ++R + 
Sbjct: 66  IAKSLRQS-FNGPFIFMTALSDVEDQLQGFNLGADDYICKPVPPPLLVARIKANLQRHKP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             ++   I  G+L ++   +TV V G  + L+  E+ ++ +L   +   +++E       
Sbjct: 125 QVKTTEKIHYGNLEIDKQRRTVLVGGGLLPLSRYEFDLLWILLEHREEQVSREYLFTKTV 184

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              Y+G D    + +D  I +LRKKL      +  I T WG+GY+L E  KD  C
Sbjct: 185 GREYNGID----RTVDGRISRLRKKLETNKKVRCRIYTSWGQGYMLSE--KDLNC 233


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           M++L+++DDK +   + +   +E ++V     G++ ++ + +  +   IILD+ +    G
Sbjct: 1   MKLLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V++ LR  ++  P+ +LS  S+  DK+ GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  LTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRS 120

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               Q     I  G L ++ ++  V+ + G  I LT  E+ ++ LL+   N   + +   
Sbjct: 121 GASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++        K + V +  LR K+  A GG   I TVWG GY + E
Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKISE 228


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +L+ E F   + + G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR AK S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-AKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G + +++D  TV V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 226


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 65

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 66  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + ++
Sbjct: 124 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 184 NINFDTDTNFIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 222


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L+ E + V     GE+ + +    + D ++LD  L  + G E+
Sbjct: 14  VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R   A    P+ +L+      DK+RGL +GADDY++KPF+  EL+AR+RA++RR++
Sbjct: 74  CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQ 133

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I  GD+S++L +  V   G  IHL   E+++++       T  ++E  L+ ++
Sbjct: 134 PVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L N     + I TV   GY L
Sbjct: 194 GPDIYVEPRTVDVHIRRLRKAL-NCDTEADIIRTVRAAGYAL 234


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60
           RIL++ED+ AL+  +   L++E F V   + G++  I L +    D +ILD  L  + G 
Sbjct: 29  RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMP-DLVILDWMLPGVSGL 87

Query: 61  EVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ R +R   A  S PV +L+      ++VRGL  GADDY+ KPF+  EL+AR+R+++RR
Sbjct: 88  EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R     +++  GDL ++     V   G  +HL   E++++E L  R     ++   L+ 
Sbjct: 148 ARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDS 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E + + +DV + +LRK L+ A G ++ I TV G GY   E 
Sbjct: 208 VWGLSAEIDERTVDVHVGRLRKALT-APGERDPIRTVRGAGYSFDET 253


>gi|330447755|ref|ZP_08311403.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491946|dbj|GAA05900.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G 
Sbjct: 5   IKILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVSWSPHLVLLDLGLPDADGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR  +R   
Sbjct: 65  DFTKELRTWT-ETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIRVALRLHS 123

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +  S ++    GD+ ++L  +TV   G  I LT KEY+++ LL+      LT +  L  
Sbjct: 124 HNTASDVIQYRFGDVVLDLAMQTVTHHGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G        + + I +LR K+ ++     YI T  G GY L
Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIESSPAQPKYIITENGVGYRL 227


>gi|116255578|ref|YP_771411.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260226|emb|CAK03330.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 230

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V          +       D I+LDLGL D PG 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVQEAPNASAARQSVTDDMPDLIVLDLGLPDTPGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G+ I L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGNEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V++ +LR+K+       +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLRE 228


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56
           +IL+ +D+  +   I L LK ENF V      EDG++     E     F   ++D+ + +
Sbjct: 7   KILVADDEPKMRELIALYLKRENFEVTAV---EDGMKALAELEEKGDVFSLFMIDVMMPN 63

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF + R +R      PV  ++      +++ G + GADDYI KPF+  E+ AR++A++
Sbjct: 64  MDGFALCREIRSFS-DKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVL 122

Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R+     + LI TG + +N++ + V V G +I+LT KE+ ++  L   K   L++E   
Sbjct: 123 KRANPVQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHIT 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++D     + + +D  I KLR+KL   AG  N I+T+WG GY    N
Sbjct: 183 RKVWDYDYFGDQRTVDTHIKKLREKLGEKAG--NEIKTIWGVGYKFEVN 229


>gi|254447845|ref|ZP_05061310.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198262625|gb|EDY86905.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 233

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L++DD  L   +E  L  E FN+ V +  E  +EL      DA++LD+ +  + G +V
Sbjct: 7   IVLVDDDAELTELLEEFLVGEGFNIQVINDPEQALEL-NLERVDALVLDIMMPKLSGLDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L++LR +   TP+ +L+G     D++ GL+ GADDY+ KP N  EL AR+RA++RR    
Sbjct: 66  LQSLR-SHSDTPIIMLTGRGDDIDRIIGLEMGADDYMGKPCNPRELSARLRAVLRRAQMT 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +A++L + G + VN   +    +G  + LT  E+ ++ELL       ++KE   
Sbjct: 125 ADSSQQNAETLQLHG-IEVNRGQRDARFEGESLGLTSAEFSVLELLMRSSGEIVSKETLT 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      P  + IDV + ++R+KLS   G ++ I+T  GRGY++
Sbjct: 184 EKVLQRPLMPYDRSIDVHVSRVRQKLSKYLGDQDIIKTARGRGYMM 229


>gi|146307260|ref|YP_001187725.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|330503403|ref|YP_004380272.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina NK-01]
 gi|145575461|gb|ABP84993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
 gi|328917689|gb|AEB58520.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina NK-01]
          Length = 225

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGTYLQQGLTEAGFNVDRVMTGTDALQHALSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRMLRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221


>gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
 gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 81/237 (34%), Positives = 130/237 (54%), Gaps = 21/237 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-------ELCKFYEFDA----II 49
           M+IL+IEDD  +   ++  LK+E    Y T+L EDG        EL K +  +A    +I
Sbjct: 1   MKILVIEDDPRVHGFLQRGLKAEG---YQTELAEDGATGLGLARELHKAFRDNAEKSLVI 57

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LD+ + ++ G EV + LR      P+ +L+ ++  +D+V GL++GADDY+ KPF+ EEL+
Sbjct: 58  LDIMMPEMNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELL 117

Query: 110 ARIRAIVRRS-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           ARI  + RR      +  A+ L V  DL ++LD+  V      I LT KE  ++EL+   
Sbjct: 118 ARIEGLARRGLVAPDKQRAKQLSVA-DLHLDLDSMRVFRGDEEISLTAKELALLELMMRS 176

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++E  L++++   ++P   I+DV+I +LR K+ +       I T  G GY L
Sbjct: 177 VGRLFSRERILSNVWGLNEDPLTNIVDVYIRRLRNKI-DTDNKPQLIHTQRGLGYRL 232


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E + V+VT  G+  ++  +  + D ++LDL L +I G +
Sbjct: 5   KILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGLD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R        P+ +L+      D++ GL+ GADDY++KPF+  ELVAR++AI+RR+
Sbjct: 65  ICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRRT 124

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               Q      I  G++ ++L+   V +   +++ T KE++++ LL+      LT+   L
Sbjct: 125 GSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223
             ++      + + +DV I + R+KL+N  A    YIETV G GY  +E
Sbjct: 185 KEIWGYGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRFKE 233


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   + L L  E F     D GE+ I L   ++ D  ++D+ +  + GF+ 
Sbjct: 4   ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + PV  L+  S  +D++ GL  G DDY+SKPF+K EL+ARI+A++RR+   
Sbjct: 64  VKKLRETS-TLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQR 122

Query: 123 AQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +++I   D         + +N  A++V+V    I LT KE+ ++  L   +    T+E 
Sbjct: 123 NRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++    E   + +D  I  LR KL       N I+TVWG GY L
Sbjct: 183 LLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKL 227


>gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 236

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  +   L+ E F   V   G   +   + +    I++D+ L D  G 
Sbjct: 2   LRVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR +    PV  L+   + EDK+ GL  G DDY++KPF+ EEL+ARIRA++RR+ 
Sbjct: 62  DATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTA 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+   VT  DL ++ DA  V   G  + LT  E++++  L       L+K   L+H++
Sbjct: 122 HPAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +        ++  +I  LR+K+       + I+TV   GYV+R
Sbjct: 182 EYDFGGSDAVVQTYISYLRRKIDVFE--PSLIQTVPRIGYVVR 222


>gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 226

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAISGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +SL  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL    G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALPGNTMTIETVRSVGYRIR 226


>gi|224080365|ref|XP_002335626.1| predicted protein [Populus trichocarpa]
 gi|222834447|gb|EEE72924.1| predicted protein [Populus trichocarpa]
          Length = 175

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 105/174 (60%), Gaps = 6/174 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL++ED + LA ++   L+SE    Y  D   DG+   KF   Y +DAIILDL L  +
Sbjct: 1   MRILIVEDSQTLAEALSQSLQSEG---YACDTAADGVSALKFLASYRYDAIILDLMLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VLRAL     + PV +LS    ++D+VR L +GADDY++KPF   EL+AR+RA+VR
Sbjct: 58  DGFGVLRALSREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R       ++  GDL V+  ++    +   + LT KEY +++LL  R+  TL++
Sbjct: 118 RPPQRDVPVLRHGDLEVDPRSRIARFKCIDLGLTPKEYGLLDLLLRRRGATLSR 171


>gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 234

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  LA  I   L+ E + V   + GE+ +E  K  +FD IILD+ L  I GFE
Sbjct: 7   QILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      PV +L+  S+  D++ GL +GADDY+ KPFN +E + R+  ++RRS  
Sbjct: 67  VCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSAW 126

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +      GD  V L +     +   I LT  E +M+ L   R+   + + + L  
Sbjct: 127 YRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILES 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    + E + +D FI +LRK          + +TV G GY    N 
Sbjct: 187 VWGYSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRNP 234


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   +   L+   + V   + GE+ + +    + D I+LD+ L  + GF V
Sbjct: 26  VLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 86  CRRLR-AESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V   G+RI LT  E+ ++ELL       + +
Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
 gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
          Length = 226

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A+ +   L  E   V      ED ++      +DAIILD  L  + G 
Sbjct: 1   MRLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQAGEVAYDAIILDWALPGMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   + TPV +L+   ++ ++V GL++GADDY+ KPF  EEL+AR+ A+ RRS 
Sbjct: 61  ALLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  QS    G  ++++DA  + +      + LTG+E+ ++  L+ R     T+   L  +
Sbjct: 121 GQTQSW---GGGAIHIDARRRMLTCGDREVALTGREFALLGELASRAGEVHTRSSLLAKV 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +    I+DV++  +R KL+        I+ V G G+ L
Sbjct: 178 WGPSFDGPPNIVDVYVGYVRTKLTEVGAEGVTIQAVRGVGFRL 220


>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 120/217 (55%), Gaps = 2/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK L   +E  LK EN+NV     G + + +   +  D II D+ +  + G+E 
Sbjct: 4   ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIMMPHMDGYEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR + I+ P+ +++   +IEDK RG   G DDY+ KP N +E++ R+ A++RRS   
Sbjct: 64  TEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIV 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +V G+++++ +  TV  +G  I L  KE+ ++  L        T++  ++ ++   
Sbjct: 124 NEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGMD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E + + +DV I +LR+K  + +  +  I TV G GY
Sbjct: 184 AETDERTVDVHIKRLREKFGDFSEFE--IITVRGLGY 218


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+ E + ++  + G++ +E+ K  +   I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYD 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R   +  +TP+ +++      DKV GL+ GADDYI+KPF+  EL+ARI+A++RR+
Sbjct: 65  VCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRT 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +     G L ++ +   V   G ++ LT KE+Q++E+L   K   LT+E  L+ 
Sbjct: 125 LLKSTEEPFKFEG-LKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      E + +DV I  LR+K+ +      YIET+ G GY
Sbjct: 184 IWGYEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGY 225


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVE--KWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRV 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G+L +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  + H I  + +           G + +   +   FD IILDL L  + G E
Sbjct: 3   KILISEDDADINHLIRSICEKNGLQTAQAFSGTEALLRLELESFDMIILDLMLPGMTGEE 62

Query: 62  VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L+ +R  K    PV +LS  SS+ DKV+ L  GADDY++KPF  EEL+ARI A +RR++
Sbjct: 63  LLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRRAQ 122

Query: 121 GHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     D+S     +   A+   V G  + LT  EY ++ LL+       ++E   
Sbjct: 123 RMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRETLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ G    E   ++V +  LRKK++       YI+TVWG G+
Sbjct: 183 ERVWQGGYYGEDNTVNVHVSNLRKKIAACDADNEYIKTVWGIGF 226


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A      L+   F+V ++  G +G+   +  EFD IILD+ L  + G E
Sbjct: 3   RILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +L++++  K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR++A +     
Sbjct: 63  ILKSMKEDK-DIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121

Query: 118 -RSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            + R +A     QS+ + G L +  D++ V V    ++L  KE+ ++  L+   N    +
Sbjct: 122 LKERFNAGIKKRQSITIRG-LKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++      +   + V I ++R+K         YIETVWG GY  R
Sbjct: 181 EELFERIWGLESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRFR 231


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +A  IE+ L++EN+ VY +   +  +E  +  + D  ILD+ L DI GF+
Sbjct: 4   KVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K + PV +L+      D + GL  GADDY++KPF    L+AR++A +RR   
Sbjct: 64  ICKKIR-EKYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYKK 122

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN-TT 168
                    S G    +  +  L +N+ A    V G  + LT  E+++++ L  +K    
Sbjct: 123 YNSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLAV 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++E+F +   D   +     I V I  LR+K+ +      YI+T+WG GY
Sbjct: 183 MSEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGY 233


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 131/223 (58%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++ ++N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S I+ G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      +IET+ G GY
Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226


>gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CMR15]
          Length = 226

 Score =  119 bits (297), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 1   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARGGEPALLLLDLMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + V    DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQ-PVPLLKTVRGLGYRL 222


>gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17]
 gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++L+EDD+  A  +   L      V     G   +      +FDA+ILD  +  + G 
Sbjct: 3   LHLILVEDDRDYAAGLADDLTRLGHRVEHVGDGRQALAALDREQFDAVILDRMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   ++ PV +L+ +S   DKV GL++GADDY+ KP   EEL ARI A++R  R
Sbjct: 63  SVVETLRERGLTVPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGRR 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G + + I  GD+ V+  +      G  I L   E +++  L+      LT+ M +  
Sbjct: 123 WTVGESDT-IRAGDIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIER 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    EPE  ++DV+I +LR KL+  AGG + IETV G GY L+
Sbjct: 182 VWGYEFEPETNVVDVYIRRLRVKLTE-AGGSDPIETVRGIGYSLK 225


>gi|304392945|ref|ZP_07374876.1| response regulator MprA [Ahrensia sp. R2A130]
 gi|303294943|gb|EFL89312.1| response regulator MprA [Ahrensia sp. R2A130]
          Length = 229

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD   A ++  M +       V D  E  I   + +  + I+LD  L    G 
Sbjct: 1   MTILIVEDDSVTAQAMAEMAEELGHEAVVVDSFEACISAVEQHAPELILLDRMLPSGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  LR+      V ++S +    ++V GL+ GADDY++KPF+  EL AR++A++RR+ 
Sbjct: 61  DAIAKLRLKGAGCLVMVVSALGRASNRVEGLEKGADDYLAKPFDPLELRARMKALLRRNA 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    LIV  DL + L A+TV   G  I ++ KE+++I   +   N  +T++M L H+
Sbjct: 121 VQSTDNDLIVFHDLEIRLKARTVHRAGCHIAVSPKEFELICYFASNANEAVTRKMLLEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P+  ++DV + +LR+KL    G    I T+ G GY+ 
Sbjct: 181 WKLNFDPQTNVVDVHVGRLRRKL-EFDGLPPLIHTIRGEGYLF 222


>gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 224

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ +PF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 127/222 (57%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   ++  L  + F V     GE+ I++  F+E      I+LD+ +  +
Sbjct: 4   LKILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDI--FFEQKDIALILLDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EVL+ +R      P+ +L+     +D+++G + G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWEVLKTIRKYS-QVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   A+ +I  G + ++  A  VE+ G  + L+ KE++++   +  +   L++E  LN+
Sbjct: 121 RSSPGAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     + + ID  + KLR KL        YI+T+WG GY
Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGY 219


>gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
 gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
           SKA14]
          Length = 237

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   +++ L+++ + V     G++G++L    + D +ILD+GL D+ G E
Sbjct: 14  RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VL  LR      PV +L+  +   +KVR L +GA+DY++KPF  +EL+AR+RA++R RS 
Sbjct: 74  VLEQLRQWS-QVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRTRSV 132

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  V   G L V+L  + V + G  + LT KEY ++ LL       +T+   L  +
Sbjct: 133 PSDGTPPVFDDGHLHVDLVRREVALDGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEI 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    + +   + + + KLR KL ++A    Y+ T  G G
Sbjct: 193 WGPTHQQDTHYLRILVGKLRHKLGDSALDSRYLFTEPGVG 232


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A    +   L++E + V   + G++G+ L +    D I+LD  L ++ G EV
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++      + P+ +LS  S   DKVRGL++GADDY++KP++ +EL+AR++A +RR+R
Sbjct: 66  CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  + +   D+ +N +   V   G  + L   EY+++  L  +      +E  L+H++
Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV + +LRK L+ A GG + I T+ G GY  
Sbjct: 186 -GRDAFVDTRTVDVHVGRLRKALT-AEGGSDPIRTIRGTGYAF 226


>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + +E+ LK+E ++V+    GE+ +++ +  E   ++LD+ + D+ GFEV
Sbjct: 5   ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + + P+ +LS      DK++G+ +GADDY+ KPFN  EL  RIRA+ RR+   
Sbjct: 65  CSKVR-ERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRI-------HLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + V+ D+ + +++  ++   H+I        LT +E++++ LL+  +    + E   
Sbjct: 124 NTKIQVSDDI-IRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V + +LR KL     G   I TVWG GY
Sbjct: 183 EKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGY 226


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + LK + F+VY  + G + + + +    DA I+D+ +  + GF
Sbjct: 7   VKVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 67  ELLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 126

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +   DL++N D   V   G  + L+  E+ ++  L   +   L+K   L+
Sbjct: 127 AVDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKID--TGDTPLIHTVRGVGYVLR 230


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++ ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226


>gi|167755206|ref|ZP_02427333.1| hypothetical protein CLORAM_00711 [Clostridium ramosum DSM 1402]
 gi|237734955|ref|ZP_04565436.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705256|gb|EDS19835.1| hypothetical protein CLORAM_00711 [Clostridium ramosum DSM 1402]
 gi|229381731|gb|EEO31822.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 236

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+A+   +   L + ++       G+  +        + I+LDLGL D+ G E+
Sbjct: 6   ILVVEDDRAVRSLVTTTLDTHDYKYITAQNGQQALLEIVSRRPNIILLDLGLPDMDGIEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R   I  P+ ++S  S  + K+  L +GADDY++KPF+ +EL+AR+RA +RR +  
Sbjct: 66  IKKVRSWSI-VPIIVISARSEDKSKIEALDTGADDYLTKPFSIDELLARLRATMRRLKYL 124

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            H +    +   GDL VN D+    +    +HLT  EY+++ LL+   +  LT    L  
Sbjct: 125 EHQEIEDVVFTNGDLKVNFDSGCAYLNDQELHLTPIEYKLLCLLAKNIDKVLTHNYILKE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + +V  + VF+  LRKK+ +      YI+T  G GY
Sbjct: 185 VWGDVIQSDVPSLRVFMATLRKKIESDTTNPKYIQTHVGVGY 226


>gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
           27755]
 gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
           27755]
          Length = 228

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K +  +I   L    + V     GE+ +E      +D ++LDL L  + G 
Sbjct: 3   LRLLIVEDEKQICDAIAKSLYDAGYEVDTCYDGEEALECILTENYDLVVLDLNLPGMDGM 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR +   T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 63  EILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 + +GD+  +   +    +  +I LT KE  ++E L L     +++E  + H++D
Sbjct: 123 VQKDVCLESGDIKFDTIKREAYAKEIKISLTRKEKGILEYLLLNLGRPVSQEELMEHVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LR+KL  A  G + I    G GY +RE +
Sbjct: 183 ASVDSFSGAIRVHMSSLRRKL-KAVLGHDVIMNKVGEGYKIREES 226


>gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               +LI   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N + 
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++ ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226


>gi|71279233|ref|YP_269868.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71144973|gb|AAZ25446.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 238

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ L+  +   L SE F+V     G+   +  K +  D IILD+ L    GF 
Sbjct: 10  KILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGFG 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +L+  S+  D+V GL+ GADDY+ KP     L+AR+ A++RR   
Sbjct: 70  VCRDLR-PEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGDL 128

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR----KNTTLTKEM 173
             QS     I  G L +N  ++ V +Q   + LT +E+ ++ LL+ +    +N     + 
Sbjct: 129 PNQSEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDYIYKA 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +   YDG D    + +DV I +LRKKL ++      I+T+WG+GY+   +A
Sbjct: 189 VIGREYDGLD----RSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDA 236


>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   + + L+ E++ V     G + ++  + +  D ++LD+ + ++ GF
Sbjct: 11  MTILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGF 70

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E L+A+R  ++ST PV +L+   S +DK+RGL  GADDYI+KPF+  EL++RIRA++RRS
Sbjct: 71  ETLKAIR--EVSTVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRS 128

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++V  DL ++   + V V+G ++ L   EY+++  L       +T E  L
Sbjct: 129 LMSPPARKTEIVVDEDLQIDFARREVMVRGKKVVLRPTEYRLLYHLVSNAGRLMTHETLL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      E   + ++I  LR+KL        YI T  G GY  +E
Sbjct: 189 SKVWGREYRDEAHYLRLYITYLRQKLEEDPAHPKYILTERGIGYRFKE 236


>gi|291532494|emb|CBL05607.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 232

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   LK +N+  +V   G   +      + D ++LDLGL D+ G E+
Sbjct: 6   ILIVEDDAAVRNLISTTLKMQNYKFHVATTGSQALLEAVSNQPDIMLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R +  + P+ ++S      DK+  L +GADDYI+KPF+ EE +AR+R  +RR    
Sbjct: 66  ITKVR-SWSNMPIIVISARCEDRDKIEALDAGADDYITKPFSVEEFLARLRVTIRRINYV 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S+ V G+L ++  +     +G  +HLT  EY+++ LL+      LT       
Sbjct: 125 QTPHKENSIFVNGELKIDYVSGCAYCRGKELHLTPIEYKLLCLLAKNIGKVLTHTYITRE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +  V  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 VWGNAWDNNVASLRVFMATLRKKIEIDTANPEYIQTHIGIGY 226


>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 231

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D  G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDASGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++ A    YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGY 227


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V    I LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|34496048|ref|NP_900263.1| two-component system response regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34101902|gb|AAQ58269.1| probable two-component system response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  L  +++  LK+E           D   L +   FD ++LDL L D  G 
Sbjct: 1   MHLLIIEDDLDLGRALQAALKAEAATTEWARKLADADALFEPDRFDCVLLDLSLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LRA R  +I+ PV +++  + + DK+ GL  GADDY+ KPF   E+V+R+RA+ RRS 
Sbjct: 61  ELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G LS+   A    + G  + L+ +E++++  L+   +  ++K +    L  
Sbjct: 121 RQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLEP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D  +   I+V +  LR+K+     G   I TV G GY
Sbjct: 181 LGDVVDGATIEVHLSNLRRKI-----GAERIRTVRGVGY 214


>gi|114331551|ref|YP_747773.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308565|gb|ABI59808.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 223

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  I+  L +  + V V +         +   FD +++D+GL D+ G 
Sbjct: 1   MRILVVEDDSLVASGIKQGLINAGYTVDVANTAGSAEIHLRDENFDLVVVDIGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  ++  PV +L+   S+ED + GL  GADDY+ KPF   EL ARIRA++RR+ 
Sbjct: 61  MLVQRLRNRQMRLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
             A + +    L +N  + T  + G  + LT +E+ ++E+L +     ++K+  L  L  
Sbjct: 121 SVASTELRHDQLILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D    P    I+V + +LR K+  A GG   I TV G GY
Sbjct: 181 WDKNITPNA--IEVHVSRLRAKI--ALGGIG-IRTVRGIGY 216


>gi|291535476|emb|CBL08588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     +   D I+LD+ +  + G
Sbjct: 4   KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 61  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220


>gi|109453282|gb|ABG34121.1| PhoP [Salmonella enterica subsp. salamae]
          Length = 213

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAPEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|53721033|ref|YP_110019.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|53723986|ref|YP_104431.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|67643062|ref|ZP_00441811.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76812001|ref|YP_331624.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|83718982|ref|YP_443831.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|121598557|ref|YP_994665.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124383773|ref|YP_001027599.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126438840|ref|YP_001060997.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126449609|ref|YP_001082503.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126453172|ref|YP_001068297.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134281503|ref|ZP_01768211.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167001286|ref|ZP_02267085.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|167564650|ref|ZP_02357566.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167571791|ref|ZP_02364665.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
 gi|167582868|ref|ZP_02375742.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167621009|ref|ZP_02389640.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|167721860|ref|ZP_02405096.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167740829|ref|ZP_02413603.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167818044|ref|ZP_02449724.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167826409|ref|ZP_02457880.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167838457|ref|ZP_02465316.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
 gi|167847925|ref|ZP_02473433.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167896484|ref|ZP_02483886.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167904883|ref|ZP_02492088.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167913163|ref|ZP_02500254.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167921101|ref|ZP_02508192.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217424117|ref|ZP_03455617.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226193064|ref|ZP_03788674.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237814384|ref|YP_002898835.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242315780|ref|ZP_04814796.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254174982|ref|ZP_04881643.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254184057|ref|ZP_04890648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254186523|ref|ZP_04893040.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194795|ref|ZP_04901226.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254201504|ref|ZP_04907868.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254206843|ref|ZP_04913194.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254260172|ref|ZP_04951226.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254298671|ref|ZP_04966122.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254357398|ref|ZP_04973672.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52211447|emb|CAH37438.1| putative two-component response regulator [Burkholderia
           pseudomallei K96243]
 gi|52427409|gb|AAU48002.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76581454|gb|ABA50929.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
 gi|83652807|gb|ABC36870.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|121227367|gb|ABM49885.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|124291793|gb|ABN01062.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126218333|gb|ABN81839.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226814|gb|ABN90354.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126242479|gb|ABO05572.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134247170|gb|EBA47256.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147747398|gb|EDK54474.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147752385|gb|EDK59451.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148026462|gb|EDK84547.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157808737|gb|EDO85907.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157934208|gb|EDO89878.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160696027|gb|EDP85997.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169651545|gb|EDS84238.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184214589|gb|EDU11632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217393180|gb|EEC33202.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225934664|gb|EEH30641.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237503655|gb|ACQ95973.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238524308|gb|EEP87741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242139019|gb|EES25421.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|243062907|gb|EES45093.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254218861|gb|EET08245.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R     TPV +L+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H+   +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL      +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223


>gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 228

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           ++IL+++D+  L  ++   L  +NF+V     G + +++      E + I+LDL L DI 
Sbjct: 4   IKILVVDDEIKLLQTVTEFLTLQNFSVMQASSGSEALKIFTENKKEIELILLDLMLPDIS 63

Query: 59  GFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           G+ VLR +R  KIS  PV ILS  S + D++ G + GADDYI+KPF+   +   I A+++
Sbjct: 64  GYSVLREIR--KISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLK 121

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G  ++++  G + +    + V  +   + +T +EY+++      K T L++E  LN 
Sbjct: 122 RA-GKMKNILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D     +V+ +D  + ++RKKL +     NYI TV+G GY+  + A
Sbjct: 181 VWDYDYAGDVRTVDTLVKQIRKKLGDDC---NYIHTVYGIGYLFEDKA 225


>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 235

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED+  +   I+L L+SE F V+  D  + G+        D ++LDLGL D  G + 
Sbjct: 8   IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
           +R LR A    PV +LS  ++  DKV  L +GADDY++KPF   EL+AR+RA + RRSR 
Sbjct: 68  IRDLR-AWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRS 126

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +   G + V+L  +TVE  G  +HLT  EY+++  L    +  LT    L +++ 
Sbjct: 127 AGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +   + V++  LRKK+ +      ++ T  G GY
Sbjct: 187 PGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGY 225


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ +  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 75  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E   
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+T+WG GY
Sbjct: 193 ERVWKEKAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGY 236


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ +DD  +   I L  + +   +     G + +E+ +  + D +ILD+ +  + GF
Sbjct: 33  MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R +R  K  TP+ +L+      D+V GL+ GADDY++KPF+  E+VARIRAI+RR +
Sbjct: 93  EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A    V   L+++LD + V V G ++    KE+ ++  L     +  ++E 
Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      +V+ IDV I K+R++L       + I+TVWG GY
Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLP--YDCIQTVWGIGY 255


>gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB056]
 gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB059]
 gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
          Length = 223

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEEYEPK-LIHTIRGLGY 217


>gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
 gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
          Length = 222

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   L+  ++  L S  F V +   G    +L +   +  ++LD+ L  + G 
Sbjct: 1   MRILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      PV +L+  S + D+V+GL +GADDY++KPF+  EL ARIRA++RRS+
Sbjct: 61  EVLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G        G L  + +   + V    + LT +E+ ++  L  R+   ++K      ++ 
Sbjct: 121 GQVNEPQRFGSLCYHEEGYFL-VDKEPLALTPREFAVLNTLFHRRGRPVSKTQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE  ++ I++++ ++RKKL+   G    I T+ G GY L +
Sbjct: 180 LSDEANLQSIELYVHRVRKKLT---GTDVNINTLRGLGYRLEQ 219


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 118/235 (50%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +N L  GR+     + IDV + +LR+ L        Y++TVWG GYV   +   E
Sbjct: 186 MN-LARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDGDGE 239


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE F+V   + GE+ I L      D IILD  +  + G E
Sbjct: 7   QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  + +   PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  +    ++  D++++ +   V    + + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L+ + GG + I TV G GY L
Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALT-SHGGDDPIRTVRGAGYAL 228


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|226946942|ref|YP_002802015.1| response regulator TctD [Azotobacter vinelandii DJ]
 gi|226721869|gb|ACO81040.1| response regulator TctD [Azotobacter vinelandii DJ]
          Length = 223

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   LA S+   L++    V V   G          +F  ++LD+GL  + GF
Sbjct: 1   MRILLVEDHAPLADSVAQALRATGLTVDVLHDGVAADLALSSEDFTLVVLDVGLPRLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR      PV +L+  + ++D+V+GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRERGNRVPVLMLTARAEVKDRVQGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G+L  +L      + G  ++LT +E  ++  L  R    ++KE   + ++ 
Sbjct: 121 LGGERQQRCGELVYDLATGRFALAGEPLNLTAREQAVLSALIARPGRVMSKEQLASQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+++I +LR+KL  A+G +  I T  G GY+L
Sbjct: 181 LDDEVSPDAIEIYIHRLRRKL-EASGVR--IVTFRGLGYLL 218


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++ ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGY 226


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +
Sbjct: 3   RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR RG
Sbjct: 63  VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RG 120

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             ++          ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+
Sbjct: 121 VTETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++ ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 181 GQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGY 228


>gi|328950079|ref|YP_004367414.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450403|gb|AEB11304.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIP- 58
           MRILL+ED+  +A  +  +L  E + V +  DL E         E D  ILD+ L +   
Sbjct: 1   MRILLVEDEPTVAEPLRALLTREGYAVTWAPDL-EAAWRALTDGEPDLAILDVMLPEDEN 59

Query: 59  -GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF   + LR A    P+  L+   ++ED+V GL  G DDY+ KPF   EL+AR+RA++R
Sbjct: 60  GGFVFAQQLREAGYQGPILFLTARDALEDRVAGLDLGGDDYLVKPFALRELLARVRALLR 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     QS +V G L V+L A+ V   G  + LT KE+ ++E  +L    T T E  L  
Sbjct: 120 REAQTKQSRLVRGPLEVDLAARRVRYDGRSVVLTEKEFALLEHFALYPEKTFTVEELLER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + G      +I+ V++ +LR+KL+        IETV G GY L
Sbjct: 180 CFPGTTS-GPRIVRVYVHRLRQKLA-----PQVIETVPG-GYRL 216


>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
 gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
          Length = 243

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIR-EKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++ V++ G  I++T  EY ++ L++  KN   T E   
Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGY 239


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I+  L ++N+N+ V   G +GI+      FD I+LD+ + ++ GFEV
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+  L+ +   +D+++G   G DDYI+KPF+   L+ R++A++RRS   
Sbjct: 65  AKMLRNHS-NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + +   +L+V+ D     V    I LT KE+++++LL   +   LT+E+ +  ++  
Sbjct: 124 SWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  LRKKL+       YI+TV G GY + E
Sbjct: 184 DYSGETRMIDTHIKNLRKKLNLP-----YIKTVKGIGYKIDE 220


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +  +I + +K++ ++VYV + G  G+EL +  +    I+D+ +  + G  +
Sbjct: 5   ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 65  TMKLR-ENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQI 123

Query: 119 ---SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               +G  +     L+  GDL +N + K V ++   +HLT KE++++ELL  +     + 
Sbjct: 124 LRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFSA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E    ++++  +      I V I KLRKK+        YI+ VWG GY
Sbjct: 184 EQIYENVWE-EEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGY 230


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +
Sbjct: 3   RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR RG
Sbjct: 63  VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RG 120

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             ++          ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+
Sbjct: 121 VTETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++ ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 181 GQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGY 228


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    + +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR++A++RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKVV 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  HA+ ++  G   +NL  + +  +G  + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ L        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|300087596|ref|YP_003758118.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527329|gb|ADJ25797.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 224

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPG 59
           MRILL+ED+  LA  ++  L  +   + +   GE G+   +  EFD +ILD+ L  ++ G
Sbjct: 1   MRILLVEDNLKLARLLKQGLGDDGHVIELAHEGESGLLYAETSEFDLLILDVMLPGELTG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V R LR   I+TP+ +L+  + I  +V GL +GADDY+ KPF+  EL A IRA+ RR 
Sbjct: 61  TDVCRILRKQGIATPIFLLTAKTRIGHRVEGLDAGADDYLCKPFSITELKALIRALQRRQ 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +    ++++     V   G  ++LT   Y+ +          LT+ M   H++
Sbjct: 121 AAGGQATVEIAGVTIDTVTHEVTTDGKPVNLTAMAYRALNYFINNPERVLTRAMIEEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG  +     ++  + +LR++L   A  K  ++T++G GY LR
Sbjct: 181 DGEADLGPGAVESLVKRLRQRLGWDA-RKGPLQTIYGEGYRLR 222


>gi|238759460|ref|ZP_04620624.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
 gi|238702357|gb|EEP94910.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
          Length = 242

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G+ GI       + A+ILD+ L D+ G 
Sbjct: 16  MKILLVDDDIELGTMLREYLSGEGFNAELVLTGKAGITAALSGNYSALILDIMLPDMSGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 76  EVLQQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 134

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H       +S+I  G L +N   ++ E +G    LT  E+ ++ELL       +TK+  
Sbjct: 135 EHPDVVFSDKSVITQGALILNPSTRSSEWRGKSFDLTASEFNLLELLLRSPERVVTKDEL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 195 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 242


>gi|227549025|ref|ZP_03979074.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078879|gb|EEI16842.1| possible response regulator [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 225

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD+ +A  I   L S  +   V D G       +  ++D ++LDLGL  + G +
Sbjct: 3   RILIAEDDRGIADFIIRGLSSAGYACDVVDSGPAAFSSARTGDYDLMVLDLGLPHMDGAD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-AIVRRSR 120
           VL  LR  + + P+ +L+  ++IED++R L+ GADDY+ KPF   EL+AR+R  +  R+ 
Sbjct: 63  VLEQLRALRETLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARVRLRLADRAA 122

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S       +  GDL+++L  + V+V      L+ +E  ++E L       L++   
Sbjct: 123 SSEDSPTDGGFRLSRGDLTLDLRTQRVKVGSTWKDLSRREVGLLETLMRHPGQILSRAQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++    +P   ++DVF+  LRKK+     G   +ET+ G GY L
Sbjct: 183 LSMVWGMDFDPGSNVVDVFVRALRKKI-----GAEKVETIRGSGYRL 224


>gi|319794112|ref|YP_004155752.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596575|gb|ADU37641.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 226

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD ++  +++  L     +V V   G + +   +  E D + LDL L ++ G 
Sbjct: 1   MKLLLVEDDPSMQITLQRTLGRRRIDVRVCGDGAEAVAQWRAIEPDVVALDLSLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV +L+   ++ D++ GL +GADDY+ KPF+ +EL ARIRA+ RRS+
Sbjct: 61  QVLAQARAEGLRTPVLLLTARGTVGDRIVGLNAGADDYLPKPFDLDELEARIRALRRRSQ 120

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +     G L    D   +  +   + LT +E  +++ L ++    +TKE    
Sbjct: 121 SAGPDTGLNPQEIGGLRFEPDNGAIYNRADLLELTPRELALMKALMMKPGHAVTKERLFE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ G  + + + I+V + +LRKKL    G    + T+ G GY+LR
Sbjct: 181 LVFPGETDVQYEAIEVVVYRLRKKL---VGTGAVLMTMRGLGYLLR 223


>gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
 gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYID-SSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQDH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       ++    L +N   +     G  + LTG E+ ++ LL+      +++E   
Sbjct: 121 SEQQADSGTPVLEVDKLQLNPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   R  P  + ID+ I  LR+KL N      + +T+ GRGY++
Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLM 226


>gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
 gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 120/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ LA  +   L    ++V     G+D +   +  E   ++LD+ L  + GF V
Sbjct: 4   ILLVEDNEELAGLLRDFLVDRGYSVLRAARGDDAVRYAERGEVRLVLLDIMLPGMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R +R ++ + PV I+S  S  ++K+ G + GADDY+ KP + E L A++ A+++RS R 
Sbjct: 64  CRQIRKSQ-NVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKRSGRA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L+V+G++++N  A+TV ++G  + L  KEY+++ L       TL KE    +++  
Sbjct: 123 QEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVWGT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + + V I  LR K+         I TVWG GY
Sbjct: 183 DSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGY 220


>gi|218516673|ref|ZP_03513513.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 225

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD + LDL L ++ G 
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVFLDLNLPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L ++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVGFGGISFDLTSRTFSAGSTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISSNAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218


>gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218]
          Length = 219

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ A++ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--KWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|159035749|ref|YP_001535002.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914584|gb|ABV96011.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 224

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 122/218 (55%), Gaps = 6/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD+ +  +I+  L +    V       DG+      + D +ILDL L D+ G  V
Sbjct: 1   MLVIEDDRDIREAIDDSLSATGHVVRPCGTALDGLRELASRQSDVVILDLHLPDLDGATV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R A  + PV + +   +  + +R L++GADDY+ KP++ E+L ARI A++RR  G 
Sbjct: 61  LSLIR-ADSAVPVVVATACDTESEIIRLLRAGADDYVVKPYSVEQLEARIAAVLRRGAGQ 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY--D 180
           A +++  G L ++ +A+   + G R+ L+  E+ ++  L+ R    +T+   L+H++  +
Sbjct: 120 AATVLTIGGLHLDAEARIASLDGVRLQLSRLEFDLLTYLAQRAGKVVTRRQLLDHVWRSE 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           GR    ++ +DV +  LR+KL  +A    Y+ TV G G
Sbjct: 180 GR---SLETVDVHVTWLRRKLGESASTPRYLHTVRGVG 214


>gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++   L  E F V V   G  G  L     +D I+LD+ L    G+
Sbjct: 1   MRVLLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR   +  PV +L+      D+V     GADDY++KPF+   LVAR+RA+ RR  
Sbjct: 61  DVLAGLRRDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +++  G L+++  A+ V ++G   I LT KE+ ++  L+ R     +K   L++++
Sbjct: 121 PERPTVLDVGGLTID-PARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E    +++V++  LR+K+ +A  G   +ETV G GY L E A+
Sbjct: 180 GADFEGNDNVVEVYVGYLRRKI-DAPFGTASLETVRGHGYRLVEAAE 225


>gi|297518770|ref|ZP_06937156.1| DNA-binding transcriptional activator CusR [Escherichia coli OP50]
          Length = 194

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/193 (33%), Positives = 109/193 (56%), Gaps = 1/193 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDV 192
           D   + +   IDV
Sbjct: 181 DMNFDSDTNAIDV 193


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   + L L+ E ++V ++  GE+ +      + D ++LD+ L  + G++
Sbjct: 5   KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++  S   DKV GL+ GADDYI KPF+ +E++ARI+A+VRR+  
Sbjct: 65  VCREIR-KKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQ 123

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + V       LSVN+    ++V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SPAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      + + IDV I +LR+KL   +  K  ++TVWG GY    + +D
Sbjct: 184 VWGFEYYGDSRTIDVHIKRLREKLEGVS-DKWELKTVWGVGYKFETDEED 232


>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 237

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E F++     G  G+ + +   +DA+ILDL L  I G E
Sbjct: 6   RILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQSL-IVTGDLSVN-LD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++L +  G LS++ LD    ++ V +    + LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++  + E     ++  I +LR KL         I TVWG GY
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGY 229


>gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 240

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  +   L+ E F   V   G   +   + +    I++D+ L D  G 
Sbjct: 6   LRVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR +    PV  L+   + EDK+ GL  G DDY++KPF+ EEL+ARIRA++RR+ 
Sbjct: 66  DATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTA 125

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+   VT  DL ++ DA  V   G  + LT  E++++  L       L+K   L+H++
Sbjct: 126 HPAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +        ++  +I  LR+K+       + I+TV   GYV+R
Sbjct: 186 EYDFGGSDAVVQTYISYLRRKIDVFE--PSLIQTVPRIGYVVR 226


>gi|238025728|ref|YP_002909959.1| putative two-component response regulator [Burkholderia glumae
           BGR1]
 gi|330815016|ref|YP_004358721.1| Putative two-component response regulator [Burkholderia gladioli
           BSR3]
 gi|237874922|gb|ACR27255.1| Putative two-component response regulator [Burkholderia glumae
           BGR1]
 gi|327367409|gb|AEA58765.1| Putative two-component response regulator [Burkholderia gladioli
           BSR3]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R     TPV +L+    + D+V+GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLSRFRQTNRHTPVIVLTARDELNDRVQGLNSGADDYMLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H+   +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL      +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+K +   +E+ LK+E +NV+    GE  +E+    E   ++LD+ +  + G EV
Sbjct: 5   ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K + P+ +LS  +   DK++G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CRRVR-EKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               Q+L   I    + ++     V +  + + LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR KL     G   I TVWG GY
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGY 226


>gi|330992698|ref|ZP_08316642.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760176|gb|EGG76676.1| Transcriptional activator protein CopR [Gluconacetobacter sp.
           SXCC-1]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 3/218 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD A    +   L+    +V     G DG        +D IILD  L  + G  +L 
Sbjct: 1   MVEDDPATTDYVRQGLRENGIDVVCVADGNDGSRQALSQPWDIIILDRMLPGLDGLAILM 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R   I+TPV  L+ M  +  +V GL+ GADDY+ KPF   ELVAR++ ++R +     
Sbjct: 61  RMRSHAITTPVLFLTTMDGVPSRVAGLRHGADDYMVKPFALRELVARVQVLLRHASPVRH 120

Query: 125 SLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           + ++T  D+ +NL    V   G ++ L  +E +++E       T L+++M L  ++    
Sbjct: 121 ATVMTVADVELNLLTLAVTRNGEKVFLQPQELKLLEYFMRNAGTVLSRQMLLKDVWHMDF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                I++  +C+LR+KL  +  G++ I TV G GYV+
Sbjct: 181 PVRTNIVETHVCRLREKLGQS--GQSLIHTVRGSGYVM 216


>gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
 gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
          Length = 230

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRH-- 118

Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H  + +V         DL +++  +     G  + LT KEY ++ELL  +    L++  
Sbjct: 119 -HISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTT 177

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 178 IASLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 234

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +   LKSE F V +   G+  I+     EF+  ILD+ L D+ G E
Sbjct: 3   KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  K S PV +L+   +  DKV     GADDYI KPF+  EL AR++A++RR+ G
Sbjct: 63  VLQYIR-RKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++++  G L +N D   V+V+G+ I L  KE+ +++ L+ R N  +T  
Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++      +   + V I +LR K+         ++TV G GY L
Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230


>gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
 gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
          Length = 227

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++     ++  L    + V ++  G D + L    ++D I+LD+ L  + G+
Sbjct: 1   MKLLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIMLPKLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR + I TPV ILS    +ED+V+GL+ GA+DY+ KPF   EL+AR++  +R   
Sbjct: 61  QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S++   DLS++L  +        I LT KE+ ++E L  ++   +T+    + +
Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +ID  + +LR K+      K  I+TV G GY L
Sbjct: 181 WDMNFDSDTNVIDAAVKRLRSKIDKPYQIK-LIQTVRGMGYKL 222


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+      D ++LD+ L  + GF V
Sbjct: 13  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 73  CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A          Q ++  GDL V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 NAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 119/232 (51%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           ++++++DD  +   +   L  E + V+V    ED   + +      FD I+LDL L    
Sbjct: 8   KLMVVDDDARIRDLLRRYLSQEGYEVFV---AEDSKAMSRIMVKERFDLIVLDLMLPGED 64

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + LR +K  TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 65  GLSICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRR 124

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +       +V G  S++L  + +   G  I LT  E+ M++ L       L+
Sbjct: 125 QPSPELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLS 184

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  L  GRD E   + +DV I +LRK +   A    YI+TVWG GYV 
Sbjct: 185 RDR-LAELARGRDYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVF 235


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +   +   G + +++ K      I+LD+ L  + G++
Sbjct: 14  KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 73

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +   STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 74  VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V GD+S++ D   V   G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 134 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I  +R+K+ +      YIET+ G GY
Sbjct: 194 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGY 234


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L + G +S++  A+ V +    I  T K+  ++       N  L KE  
Sbjct: 122 LLGNVSKQRDTLYIHG-ISIDQRARKVFINNEEIAFTTKD--LLTFFVTNPNQVLNKEQL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 179 FERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGY 223


>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 239

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A ++   L+ +   V       D     +    DA++LD+GL D  G +
Sbjct: 11  RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A  + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR RA++RR + 
Sbjct: 71  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQR 130

Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   +        S++   + V +QG  + LT +EYQ++  L  R    L++E  L+
Sbjct: 131 LQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLD 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D  +  LR KL   A  +++I T  G GY L
Sbjct: 191 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S            G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 9/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           +L+++D+++L   +EL+  +   N     L  DG E  +  E      IILD+ L D  G
Sbjct: 34  VLVVDDEESL---LELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDG 90

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F + R LR   I TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVARI+A++RR+
Sbjct: 91  FTLCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRT 150

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q +   G + ++     V   G R+ LT  E++++  L+       T++  L+ ++
Sbjct: 151 EGRRQQI---GPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV +  LR+KL        +I TV G GY L
Sbjct: 208 GEEAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKL 249


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLN 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227


>gi|227113940|ref|ZP_03827596.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 220

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   ++  L    FN+     G+ G    K   +DA++LDL L  + G 
Sbjct: 1   MRVLLIEDDRLIGDGLKAGLIKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A    PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G +S+   +++V +    + L  +E  ++EL  L  +  LT+      LY 
Sbjct: 121 GQLQPALTHGAVSLEPGSRSVTLNSEPLILKSRELALLELFLLNPSRVLTRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY+L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGVGYIL 216


>gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 218

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD+A+++ I + L    +    T  G +   L K   FD I++D+ L  I GF
Sbjct: 3   INILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFNLIKQESFDLILMDIMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R+  ++ PV  L+  + + DK+ GL+SGA+DYI KPF   EL+ARI  ++RR  
Sbjct: 63  ELMK--RIKSLNVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I    L +  D + ++     I LT KE+++I LL   KN  L++E  L  ++ 
Sbjct: 121 KN-NNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I K+RKKL  A      I+TV+  GY L E
Sbjct: 180 YEYMGETRTIDTHIQKIRKKLDIAEN----IKTVYKIGYRLEE 218


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L+ E ++V VT+ G + +E       D ++LDL L  +PG E
Sbjct: 3   RILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + S PV +L+   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRQLR-TRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+ +  G + +++D   V V+G R+ L  KE++++ELL       LT+   ++ +
Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+        ++ TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGY 222


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +       G D +   + Y  D ++LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R +R +  + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 120 -RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            R  A +     ++   DL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 130 ARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALR 237


>gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 222

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 22/232 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ L+ ++  +LK  N+ V     GE G  + +   +D IILD  L    G 
Sbjct: 1   MRLLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCKEGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   I TPV +L+   ++E+++ GL +GADDY+ KPF+  EL+AR+RA+ RR  
Sbjct: 61  EILKELRNQGIGTPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRR-- 118

Query: 121 GHAQSLIVTGD----LSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +++ + GD      + LD +  EV   G  I LT KE  ++EL        +T+E  
Sbjct: 119 ---RNVQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQI 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           L+ ++    + E   +++++  LRKKL       N+    IET+ G GY L+
Sbjct: 176 LDRVWGLDSDVETGTVEIYVHYLRKKL-------NFRDISIETIRGVGYCLK 220


>gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
 gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
          Length = 231

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L +E + +     GE+   L    + D I+LDLGL DI G 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGLPDISGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L   R   +  P+ +LS  +     V+ L+ GADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHKL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + +   GDLSV+L  + V+V    + L+ KEY+++ +L       +T +  L H+
Sbjct: 126 QQQGERPIFQVGDLSVDLVKRIVKVADKEVKLSPKEYEILRVLVQHAGKVITHQHILKHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + G    +V+ + V++ +LR+K+        YI T  G GY LRE
Sbjct: 186 WGGST--DVQYLRVYVRQLRQKIEATPDQPQYILTETGVGYRLRE 228


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 122/219 (55%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+++DD ALA  + ++L++E   V +V D G   +   +    D ++LD+ L  I G 
Sbjct: 6   RVLVVDDDLALAEMLGIVLRNEGLEVDHVAD-GSGALAAFRETRPDVVLLDVMLPGIDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A+   P+ +L+  +   D V GL+SGADDY+ KPF  +EL+AR+RA +RR  
Sbjct: 65  EVCRRIR-AESGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGD 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++   +V+ +G  + LT  E+ ++  L+ +     T+E+ L  ++ 
Sbjct: 124 DVEPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 184 YRHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGY 222


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +L H I+  L+ +++ VY TD G+  + L +  + D IILDL L D+ G +
Sbjct: 5   KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  S  +D V GL  GADDY+ KPF+  EL+AR+ +++RRS+ 
Sbjct: 65  VCKTIR-KKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123

Query: 122 -----HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  + +   G+ LS++ +   V V+G  + LT  E++++E L+       ++   +
Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N +     E   + IDV I  +R+K+ +     ++I TV+G GY  +E
Sbjct: 184 NLIQGDDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKFQE 231


>gi|218460851|ref|ZP_03500942.1| two-component transcriptional regulator [Rhizobium etli Kim 5]
          Length = 121

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 69/82 (84%)

Query: 1  MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
          MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1  MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61 EVLRALRVAKISTPVCILSGMS 82
          EVLR LR++K+ TP+ ILSGM+
Sbjct: 61 EVLRTLRLSKVKTPILILSGMA 82


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  IE+ L +EN+ VY    G D +      EFD  ILD+ L  + GF 
Sbjct: 4   KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  LCQKIR-EKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122

Query: 122 HAQSLIVTGDLS-------VNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++ SL    +LS       + L+ +T E  + G  + LT  E+ ++ +L   K + +  E
Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182

Query: 173 MFLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + ++  +DE   K    I V I  LR+KL +      YI+T+WG GY
Sbjct: 183 NLFHAIW--KDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGY 230


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 19/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +E  LK   + V     GE G +       D I+LDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ- 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRI--------------HLTGKEYQMIELLSLRKNT 167
               L          D+ ++ + G +I               LT KE++++  L+  K  
Sbjct: 123 ----LTAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGR 178

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LT++  L+ +++     + +I+DV +  LR+K+        YI+T+ G GY L E
Sbjct: 179 VLTRDQLLSAVWNYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEE 234


>gi|148546876|ref|YP_001266978.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510934|gb|ABQ77794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497928|gb|ADR59294.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|313144025|ref|ZP_07806218.1| two-component regulator [Helicobacter cinaedi CCUG 18818]
 gi|313129056|gb|EFR46673.1| two-component regulator [Helicobacter cinaedi CCUG 18818]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 16/222 (7%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGE---DGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IEDD AL  SIE ML   N + Y TD+ E   DG        +D ++ D  L D  G 
Sbjct: 1   MVIEDDSALCKSIEDML---NGHSYQTDIAENLKDGEYFISIRNYDLVLSDWDLPDGCGV 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  ++     TPV I+S  SS+E+++   + GADD++SKPFN E L+ RI+A   R R
Sbjct: 58  DIISQVKEKSPRTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQA---RLR 114

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I   DL +N D + +  +G  I + GK ++++  L+  ++  ++KE  L+ ++ 
Sbjct: 115 FWGSSVIEIEDLVINPDEEKITYKGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW- 173

Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EPE+    +I+V I ++R+K+         IETV  RGY
Sbjct: 174 --EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 212


>gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED+  +   I    K  N+ VY    G+D +      + + IILD+ + ++ G+EV R 
Sbjct: 1   MEDEIRIREVIADYFKQNNWEVYEAGNGKDALLWFDSVQPELIILDIMMPELDGWEVCRQ 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           +R ++   P+ +L+  S  +DK+ G + GADDY++KPF+ + L+AR  A+++R  GH Q 
Sbjct: 61  VR-SRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHVQP 119

Query: 126 ---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  G   +N  A  +EV    + LT KEY+++ LL   K   ++++  LN ++   
Sbjct: 120 ESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWGIN 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E + +++D  I KLR KL   +    +I TV+G GY   E
Sbjct: 180 FEGDTRVVDTHIKKLRSKLGRES---RHIRTVFGTGYRFEE 217


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 131/236 (55%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ +E  +    D I+LD+ L  + G +
Sbjct: 4   KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR   
Sbjct: 64  VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123

Query: 119 ---SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S+G  +     I+ G+L +  +      +  ++ LT KE++++  L   K   LT++
Sbjct: 124 SSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   +E
Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 235

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           ++IL++EDDK ++  I  +L+ E + +     G + ++   F  EF  I+LDL +  + G
Sbjct: 7   IKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FE++R +R  K + P+ ++S  ++  DK+  +  GADDYI KPF+  E V RI+A++RR 
Sbjct: 67  FEIIRRVR-QKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRY 125

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +S I   DL V+++A T+      I +T  E+++++L  L  N   TK  
Sbjct: 126 IYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++          + V I +LR K+ + A    YI TVWG GY L E
Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKLGE 235


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V + G   +        D ++LDL L  + G E+
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSGTEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +ALR  + S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKALR-TRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A+      ++  G + ++++   V V G +I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKL 226


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  +E+ LK+EN+N++    G+D ++  +  + D  ILD+ L D+ GF +
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVDGFSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K + PV +L+      DK+ GL  GADDYI+KPF   EL+AR++A +RR    
Sbjct: 65  CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I    L +++D     +   ++ LT  E+ ++ +L   +   ++ E   
Sbjct: 124 NSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         + V I  LR+K+ ++A    YI+TVWG GY
Sbjct: 184 SEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGY 228


>gi|327394208|dbj|BAK11630.1| transcriptional regulatory protein BasR/PmrA BasR [Pantoea ananatis
           AJ13355]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 128/238 (53%), Gaps = 20/238 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L L+   +         DG+   +  E       +  ++LD+G
Sbjct: 1   MKILIVEDDALLLQGLVLALEGAGYVC-------DGVSTVRSAEAHLASGLYSLVLLDIG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G  +L+ LR  K   PV IL+   +IE+++ GL +GADDY+ KPF  +EL+ARIR
Sbjct: 54  LPDEDGLHLLQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR      S +  G+LS+++  + + +    + LT KE+ ++  L L+    + +E+
Sbjct: 114 ALIRRHVNQGDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHREL 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
               +Y+  +EP    ++V I  LR K+     GK  I TV G GY L +  A++E+ 
Sbjct: 174 LYQDIYNFDNEPSTNTLEVHIHNLRDKV-----GKATIRTVRGFGYALSQPRAENESS 226


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S            G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|84394086|ref|ZP_00992821.1| putative two-component response regulator [Vibrio splendidus 12B01]
 gi|84375277|gb|EAP92189.1| putative two-component response regulator [Vibrio splendidus 12B01]
          Length = 243

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +  NV   +  E   +L    +FD ++LD GL D  G + 
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K+ 
Sbjct: 132 ESVTQEAMTTESIMNFGGLIIQPERHQVSLNNRDVPLTATEFTLLHFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 192 LLDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|120599950|ref|YP_964524.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146292114|ref|YP_001182538.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560043|gb|ABM25970.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563804|gb|ABP74739.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425410|gb|ADV53484.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 237

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSTEDQIKGLELGADDYVVKPVDPALLVARIHNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L++    ++ 
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDDKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN  +DG+D    + IDV I +LRKKL++       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G + +        D I+LD+ L D  GF V
Sbjct: 10  VLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFAV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ G 
Sbjct: 70  TRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGGP 129

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A     +  +   DL V+ +  TV   G  + L+  E++++  L       L K   L  
Sbjct: 130 APVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQE 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + +I+D +I  LR+K+     G   I TV G GY LR
Sbjct: 190 VWQYGFAGDTRIVDTYIKNLRRKIDQE--GPPLIHTVRGVGYCLR 232


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ 
Sbjct: 63  SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++      + +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 122 GESEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 220


>gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSG 141

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKID--AVHPPMIHTVRGAGYVIKP 244


>gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
 gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K +  ++   L    + V     GE+ +E      +D I+LDL L  + G 
Sbjct: 3   LRLLIVEDEKQICDAVAKSLYDAGYEVDTCYDGEEALEYILTENYDLIVLDLNLPGMDGM 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR +   T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 63  EILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 + +GD+  +   +    +  +I LT KE  ++E L L     +++E  + H++D
Sbjct: 123 VQKDVCLESGDIMFDTIKREAYAKETKISLTRKEKGILEYLLLNLGRPVSQEELMEHVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LR+KL  A  G + I    G GY +RE +
Sbjct: 183 ASVDSFSGAIRVHMSSLRRKL-KAVLGYDAIMNKVGEGYKIREES 226


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 121 GHAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              Q+ I        V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|21885924|emb|CAD29778.1| putative transcriptional regulator [Arthrobacter sp. C2-2]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 124/219 (56%), Gaps = 10/219 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  L   I  +L ++++ V +   G+ G+ L    ++  +++D GL  + G E
Sbjct: 8   RLLLVEDDPVLGPLIAELL-ADDYEVQLATDGQKGLHLGLTGDWAVLVVDRGLPVLDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L ALR   + TP  IL+ + +  +K+ GL +GA+DY++KPF+  EL AR+RA+  R+  
Sbjct: 67  LLAALRRQGVGTPALILTALGATAEKIEGLDAGANDYMTKPFDAGELRARLRAMT-RTFA 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A + +  GD  +   ++ +    G RI LT KE +++ LL+   +   T+   ++ L+ 
Sbjct: 126 AAPTQLAIGDWMLEPASRLLRSDYGDRIELTAKESELLALLAGEPDRVFTRPELMDALFH 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +D P V  ID ++  LR+K+S     K  + TV G GY
Sbjct: 186 PQDSPGV--IDTYVHYLRRKVS-----KTVVRTVHGVGY 217


>gi|323699757|ref|ZP_08111669.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459689|gb|EGB15554.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 240

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+DD+ L   +   + +    V     G DG+++     FDAI+LD+ L DI G  +
Sbjct: 10  VLMIDDDENLCGVVSDFMGAYGLEVQYALDGNDGLQMALSSAFDAILLDMMLPDIDGLTI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      PV I+S  + + DK+ GL+ GADDY+ K F   EL+AR+RA++RRSR  
Sbjct: 70  LKQLRAKAPKLPVIIISAQTDVSDKIVGLEMGADDYVPKTFAPRELLARLRAVLRRSRTS 129

Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+ +          +V   L ++      ++ G  + L+  E+Q++  ++       +++
Sbjct: 130 AEDMVEEESCDGETVVIHGLMLDSTRMQADLNGKTLDLSTIEFQLLYRMASHPGRVFSRD 189

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ ++ GR+     + +D+ I  LR+KL ++    +Y+ TV G GY+ 
Sbjct: 190 QLISDIF-GREYCIFDRSVDMHISSLRRKLGDSPRTPSYLRTVRGSGYMF 238


>gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CRIIRQSS-DVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
               +LI   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N + 
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIF 182

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++G D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 GIDFNGYD----RTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGY 222


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   +++ L+ EN+ +   D G   +E+    E+D I+LD+ +  + G 
Sbjct: 5   VRILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR  
Sbjct: 65  EVCKEIREKK-ATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSS 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    + +IV   L+++ DA  V  +G  I+LT KEY+++  L+   +    +E
Sbjct: 124 STTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 184 QLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGY 231


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK ++F VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKID--TGETQLIHTVRGVGYVLR 230


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   L SE +N  +T  G   + +   Y+ D I++D+ L  + G E 
Sbjct: 14  VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      DKV GL +GADDY++KPF+  ELVAR +A++RR    
Sbjct: 74  TKRITAAR-PVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++    L+++   + V + G  +HLT  E+ ++  L+ +    LT+E  
Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  +  LR KL     G   I TV G GY     A
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSEMIRTVHGVGYAFEPPA 238


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 125/231 (54%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L    + V     G D +E+ +      I+LDL L  + GF+
Sbjct: 10  RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIE--DKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VL  LR  + +  V +L   +  E  D++RGL  GADDY++KPF+  ELV R+ AI+RR+
Sbjct: 70  VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A  +    +V G L ++  A TV V G  + LT  E++++  L+ R+     +   L
Sbjct: 130 -GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +++   + + + +D+ + +LR KL  AAG    IETV G GY LR +A 
Sbjct: 189 ETVWEAAPDIQTRTVDMHVQRLRSKL-GAAG--ELIETVRGFGYRLRASAP 236


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  +A  + L ++ E + V +   GE+G+      E D +I+D+ L ++ G 
Sbjct: 1   MHVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R      P+ IL+G    +D VRGL +GADDY+ KPF  +EL+AR+++++RRS 
Sbjct: 61  DICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSF 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +A S      G+ S++ +     + G  I    +E +++ LL   K  TL++E  L+ +
Sbjct: 121 PYAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + + + +DV + ++R+KL       + + TV G GY
Sbjct: 181 WGKDFDGDPRTVDVHMKRIREKLRTFESDWSLV-TVRGVGY 220


>gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 228

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD+++A  ++  L+ E+F V     GE G        +  +++DL L  + GF
Sbjct: 1   MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
            +   +R A    P+ ++S   +  DKV+    GADDY++KPF+  EL AR++A +R   
Sbjct: 61  ALCEKIR-ASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    +  +   D+ +++  + V  +G +I LT KE++++  L+       TKE     
Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++G D  + + + V +  +R KL +      YIETVWG GY
Sbjct: 180 VWNG-DGFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGY 220


>gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8]
 gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 114/218 (52%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +   +   L+ E F V     G + +E       D ++LD GL D+ G E
Sbjct: 3   RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALERVGEEGADVVVLDRGLPDMEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR      PV +L+G +  E +V GL  GADDY+ KPF+  EL+ARI+A++RR+  
Sbjct: 63  VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +     G L V+L  +   ++G  + L+  E  ++ + +       T+   L  ++  
Sbjct: 123 EGRRRF--GPLEVDLGGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E   +++D ++  LRKKL +      +IETV G GY
Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGY 218


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ +LA  +  +L+ E F V V   G   +E  +    D ++LDL L  + G +
Sbjct: 3   RVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+   S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKRLRMTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAE 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++ +G + ++++  TV V+G  + L  KE+ ++E L       LT+   +
Sbjct: 122 AEAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 DRVWGSDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGY 225


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++DD  L   ++  L+ +    Y+     DG ++ K  +   F  I+LDL L +  
Sbjct: 24  RILVVDDDARLRTLLQRFLEDDG---YIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +   LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR
Sbjct: 81  GISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 140

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT+
Sbjct: 141 QTRELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTR 200

Query: 172 EMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 201 DKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 250


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +   +   G + +++ K      I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +   STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 65  VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V GD+S++ D   V   G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 125 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I  +R+K+ +      YIET+ G GY
Sbjct: 185 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGY 225


>gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD  +A ++  +L    F+      G   +E    ++ D ++LDLGL D  GF
Sbjct: 1   MLLLIVEDDDHVASALAAVLGRHGFDTERARTGAQALEALS-HDPDLVLLDLGLPDTDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R  +   P+ +++  +    ++ GL  GADDY+ KP++  EL+ARI A+ RRS 
Sbjct: 60  DLCRRMR-QRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRSA 118

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++   T   G +SV++D++   V G  + LT KE+ ++ +L+ +     ++   L+ 
Sbjct: 119 PRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILSE 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +   + ++V +  LR KL    G  + ++TV G GY LR 
Sbjct: 179 VWSTHWQGSQRTLEVHVASLRTKL----GLPDAVQTVRGVGYRLRP 220


>gi|329113654|ref|ZP_08242430.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001]
 gi|326697014|gb|EGE48679.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +++  ++ +   V      ED        ++D ++LDLGL D  G 
Sbjct: 1   MRILIVEDEHDLGAAVQERVRQDGHAVDWFMTLEDARAAVATVDYDFMLLDLGLPDGNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++LR +R     T + I +    I D++ GL  GADDYI KP++  ELVARI A+ RR  
Sbjct: 61  DLLREIRRTSFDTAILITTAEDQISDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYV 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+    G++ ++ + ++V      + LT +E+ ++ELLS R     ++      LY
Sbjct: 121 TPRRQACYQIGEIVIDRENRSVMRNEMELELTAREWAIMELLSRRPGRIYSRHQIDTALY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +     ++VFI +LRKK+ N       I+TV GRGY L + A
Sbjct: 181 ALDQDVGSNTVEVFISRLRKKVGNTV-----IKTVRGRGYCLADRA 221


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L   +   L+   F V     G   +   +      I+LD+ L D  GFE
Sbjct: 6   RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65

Query: 62  VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V+R LR      A    PV  L+   + ED++ GL++G DDY++KPFN EELV RIRAI+
Sbjct: 66  VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G      +V G L ++ D+  V   G  + L+  E+ ++ +L       L+K   L
Sbjct: 126 RRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185

Query: 176 NHLYD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++    G D+    I+  +I  LR+K+         I TV G GYVLR +
Sbjct: 186 ELVWQYDFGGDD---SIVASYISYLRRKVD--LDEPKLIHTVRGTGYVLRRH 232


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217


>gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 226

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD   A  +   L+    +V     G DG+ L    E+DA+I+D  L  + G 
Sbjct: 1   MKLLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++ A R A  +TPV ILS    ++D+V GL++G DDY++KP+   EL+ARI A+ RR  
Sbjct: 61  GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R  + +L V  DL ++     V  +   I L  +E+++++ L       +T+ M L  +
Sbjct: 121 TRDSSDTLAV-ADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +P+  +IDV I +LR K+         + TV G GYVL +
Sbjct: 180 WGYHFDPQTNVIDVHISRLRSKIDRDF-DTPLLHTVRGAGYVLSD 223


>gi|188588682|ref|YP_001919802.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188498963|gb|ACD52099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 231

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQSINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKNEIKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRL 229


>gi|154506203|ref|ZP_02042941.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149]
 gi|210612116|ref|ZP_03289175.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787]
 gi|225027853|ref|ZP_03717045.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353]
 gi|257414190|ref|ZP_04745516.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
 gi|153793702|gb|EDN76122.1| hypothetical protein RUMGNA_03745 [Ruminococcus gnavus ATCC 29149]
 gi|210151719|gb|EEA82726.1| hypothetical protein CLONEX_01374 [Clostridium nexile DSM 1787]
 gi|224954800|gb|EEG36009.1| hypothetical protein EUBHAL_02113 [Eubacterium hallii DSM 3353]
 gi|257200898|gb|EEU99182.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
           intestinalis L1-82]
          Length = 245

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     +   D I+LD+ +  + G
Sbjct: 25  KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 82  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 140

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 141 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQ 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 201 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 241


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  LK E + V+    G + +++ +    D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +        I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  118 bits (296), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V+    GE+ ++  +    D IILDL L  I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         S I  G L+++ +A  V   G +I LT +E++++  L+      +T+E 
Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLR 230


>gi|297156215|gb|ADI05927.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 125/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +++  L++  + V V   G  G+ + +   + AI+LD+ L  + G+
Sbjct: 1   MRLLVVEDEEGLAIALKRGLEAAGYAVDVAHDGLIGLHMARQNPYQAIVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR   I TP+ +L+  +   D+   L +GADD+++KPF+   L AR+RA++RR  
Sbjct: 61  RVCARLRAEDIETPILMLTAKNGEYDEAEALDTGADDFLAKPFSYVVLEARLRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  GDL ++   ++      +  LT KE+ ++E L+ R    + K   ++ ++ 
Sbjct: 121 ARTRTVLRIGDLWIDPAGRSSGRGDVQFRLTAKEFAVLECLARRAGEVVPKIDIVDQVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E ++ I++V++  LR+K+     G+  IETV G GY
Sbjct: 181 ADFEGDLNIVEVYVSALRRKIDTPF-GRASIETVRGIGY 218


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A      L+ + F   +   G +G+      +FD I+LDL L  I G+E
Sbjct: 4   KILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + R +R  K   P+ +++      DK+RGL  GADDYISKPF+  ELVAR++A + +  R
Sbjct: 64  ICRKIR-GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               S++ +     G + +N     V +  H +    KEY+++  L    +   +KE   
Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      ++K + V I +LR+K+        YI+TVWG GY
Sbjct: 183 ERIWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGY 226


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E + V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
           V RA+R  ++S  P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R 
Sbjct: 64  VCRAIR--RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   DLS+++    V+ +G  I LT  E+ ++  L+       ++E  L  ++
Sbjct: 122 DSQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 GYRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGY 221


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD  ++  + ++L+SE ++V V   G + + L +    D ++LD+ L  + G 
Sbjct: 1   MRILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  +   P+ ++S  +   D + GL++GADDY++KPF    L+AR++  +RR  
Sbjct: 61  SVCRLLR-EESDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ L V  DLS++L A  V+     +HLT  E+ ++ +L+ +     ++E  L  ++ 
Sbjct: 120 NESEILKV-ADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V I +LR K+         + TV G GY
Sbjct: 179 YRHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGY 217


>gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ + + I   L +  +       G++ + +   +  D I+LDLGL D+ G EV
Sbjct: 6   ILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L ++R    STP+ ++S  S   +KV+ L  GADDYI+KPF   EL+ARIR  +R S   
Sbjct: 66  LTSVREWS-STPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTAIRHSLKI 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  ++    DL+++ D   + V   ++HLT  E+++I LL+      LT +  +  
Sbjct: 125 SKTNQGANIFKASDLTIDYDKHMLLVGDEKVHLTQIEFKLISLLAQHAGKVLTYDYMIKK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++        +I+ V +  +R+K+    G   YI T  G GY + E   + T
Sbjct: 185 IWGPYAGSNNQILRVNMANIRRKIEQNPGDPKYIFTEVGIGYRMIEEEGEST 236


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA ++   L+ E ++V V   G  G++  +  + D ++LD+ L  + GF V
Sbjct: 4   VLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +L+      D++ GL+ GADDY+ KPF+  E +AR+RAI+RRS   
Sbjct: 64  CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122

Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S++      G + V+  ++     G  ++L  KE+ ++  L   +   LT+++ L  +
Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      + + +DV I  LR+K+    G   YI+TV G GY     + D
Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFEPPSDD 231


>gi|261823721|ref|YP_003261827.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|261607734|gb|ACX90220.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 220

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   ++  L    F +     G+ G    K   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDRLIGDGLKAGLTKLGFTIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A    PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G +S+   +++V +    + L  +E  ++EL  L  N  LT+      LY 
Sbjct: 121 GQLQPELTHGSVSLEPGSRSVTLNCEPLILKSRELALLELFLLNPNRVLTRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY+L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSGFIRTVHGIGYIL 216


>gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup]
 gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD    H +E        +V V   G+ G  L     +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLK 222


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 11  ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 71  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 129

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V G ++ LT KE+ ++ LL+         E 
Sbjct: 130 TLNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 190 IFQHVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 237


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ +  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 75  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E   
Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+T+WG GY
Sbjct: 193 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGY 236


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+ +  + D ++LD+ +  + G+ 
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 68  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             H    +  +I  GDL ++ + + V  +  RI LTG E+ ++ELL  R     ++   L
Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235


>gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           + +  +FD ++LDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G ++ L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E ++V   D+ +DG+E  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKKAPDSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  KKDGMEVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRS      HA + I    VT  L ++ D + V      +  LT KE+ ++  ++ +  
Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 25/248 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M++L+IED+K+++  + +  + E ++V       DGIE    +      +D I LDL L 
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+
Sbjct: 58  KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117

Query: 116 VRRSRGHAQSL--------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160
            RR+   AQ                I T    +N + +   + G  I  LT KE++++  
Sbjct: 118 QRRAHTEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L+ +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY 
Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYK 235

Query: 221 LRENAKDE 228
             ++  D+
Sbjct: 236 FDDSEVDK 243


>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD+ LA  +   L +E + V       +G +  +   FDA+ILD+ L D  GFE
Sbjct: 4   RLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPDGDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR R 
Sbjct: 64  LCRQIRTHS-RVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ +  G L ++  ++ V + G    LT  ++ ++   +      L++E  ++ L  G
Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMD-LVKG 181

Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            D +   + IDV + +LR  + +       + T+ G GYV    A+++  E
Sbjct: 182 EDLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF---AREQDAE 229


>gi|124003241|ref|ZP_01688091.1| RprY [Microscilla marina ATCC 23134]
 gi|123991339|gb|EAY30770.1| RprY [Microscilla marina ATCC 23134]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD  L + ++  L+ ENF+V++   GE G E  +   +D  +LD+ +    GF
Sbjct: 7   IRVLLVEDDLNLGNLLQDYLEMENFDVHLCRDGEAGFEAFEAGTYDICLLDVMMPKKDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + ++    + P+  L+  S  EDK+ G   GADDYI+KPF++EELV RI A+++R++
Sbjct: 67  TLAKQIKEKNQAVPILFLTAKSLKEDKINGFTIGADDYITKPFDEEELVLRIHAVLKRTQ 126

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           G      + ++    G  + +     + +      +T +E +++ LL L KN  L +E  
Sbjct: 127 GDPMAQKNDETKFKIGKYTFDYANHALSIDDDVRRITKRESEILRLLYLYKNRILKREEA 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++   D    +  DVFI KLRK L   +  K  IE V G G++L
Sbjct: 187 LVSIWGENDYFHGRSFDVFITKLRKYLKKDSNVK--IENVHGVGFML 231


>gi|104783276|ref|YP_609774.1| DNA-binding response regulator TctD [Pseudomonas entomophila L48]
 gi|95112263|emb|CAK16990.1| putative DNA-binding response regulator TctD [Pseudomonas
           entomophila L48]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA S+   LKS+   V V   G          ++   +LD+GL  + GF
Sbjct: 1   MRVLLVEDHLQLAESVAQALKSQGLTVDVLHDGVAADLALASEDYAVAVLDVGLPRLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV +L+  S ++D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  EVLARLRGRGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L  +LD +   +    + LT +E  ++E L  R    ++KE     ++ 
Sbjct: 121 LGGERQQRCGPLVYDLDTRRFTLGDEPLTLTQREQSVLEALIARPGRVMSKEQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+++I +LRKKL    G    I T  G GY+L
Sbjct: 181 LDEEASPDAIEIYIHRLRKKLD---GHPVAIVTFRGLGYLL 218


>gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +++ +K+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVREVR-KDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++  G L +N D+  V  + G  + LT  E+ ++ LL+   N   + +  
Sbjct: 120 EKDMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  IETVWG GY
Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGY 224


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD  ++ ++ L L  +   V     GED + + +    D ++LDL L  + G 
Sbjct: 3   VRVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LRV +   PV I++  +  +D + GL++GADDY++KP    EL ARIRA++RR+ 
Sbjct: 63  SVCHELRV-RGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  GDL ++   +TV   G +I LT  E++++  L+  +   +T+E  L+ ++ 
Sbjct: 122 PVRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIW- 180

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           GRD     +++DV I +LR+K+         + TV G GY
Sbjct: 181 GRDYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGY 220


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  +LVAR++A++RR+ 
Sbjct: 65  EVCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAY 123

Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V   G  + LT  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 119/238 (50%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +N L  GR+     + IDV + +LR+ L        Y++TVWG GYV      D  CE
Sbjct: 186 MN-LARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF---VPDGDCE 239


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D I+LD+ L  + GF V
Sbjct: 15  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 75  CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A          Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243


>gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V DL   GE+G+ L    ++D +++D  L   
Sbjct: 16  MRLLIIEDDR---ESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKR 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 73  DGLSVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++    GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 133 RHGGPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRGKIDKGF-DRPLLHTIRGAGYMIRDGIR 241


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++++    + V V G  + LT +E+ + +L          ++  L
Sbjct: 119 KKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL ++     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221


>gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 222

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 7/219 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD A+  ++   L +E F V     G D  E  K +  D ++LD  L    G +
Sbjct: 6   RVLVVEDDAAIRAAVVSTLTAERFVVRGLASGVDLEEEVKGFLPDLVVLDWMLPGPSGIQ 65

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  A R+ + S   V +L+   ++ED++RG   G DDYI KPF   ELVAR+ A++RR R
Sbjct: 66  L--AERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVLRR-R 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  GDL V+ D+      G ++ LT  E+Q++  L+  +  TL+K   L  ++ 
Sbjct: 123 GRLASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVW- 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D+ +  +++V I  LRKK+   A G   + TV G GY
Sbjct: 182 GYDQTDPNLVEVHISALRKKME--ARGPRLLHTVRGLGY 218


>gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 224

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V + + G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|328479685|gb|EGF48847.1| OmpR family DNA-binding response regulator [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL LK E +   V   G  G+E     ++DAI+LDL L ++ G E
Sbjct: 3   KILIIEDEKNLARFVELELKHEGYETEVHFNGRTGLEAALAEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AI 115
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+R      +I
Sbjct: 63  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALLRRISI 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ I   DL +  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 EGENNTAKQTTIKYRDLVIEKENRVVRRGDDIIELTKREYELLLTLMENVNVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++    + E  ++DV++  +R K+ +  G  +YI+TV G GYV
Sbjct: 182 SKVWGYNSDVETNVVDVYVRYIRNKI-DRPGEPSYIQTVRGTGYV 225


>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  ++L L+ E ++V ++  G +G+ +     +D +ILD+ L  + G E
Sbjct: 12  RILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGME 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VLR +R    S PV +L+    + DKV GL  GA DYI+KPF  EEL+ARIR + +    
Sbjct: 72  VLRRIRQVS-SLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      ++  G L+++ +   V      + LT KE+++++ L L KN  +T+E  L  +
Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  ++DV+I  LR K+      K  I TV G GY +++
Sbjct: 191 WGYDYLGDTNVVDVYIRYLRNKIDQRFEDK-LIYTVRGMGYQIKD 234


>gi|291560891|emb|CBL39691.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 224

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     +   D I+LD+ +  + G
Sbjct: 4   KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 61  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 120 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 180 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 220


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E + +Y    G++ + +   ++ D +ILD+ +    G EV
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RRS   
Sbjct: 66  CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      +I    + ++    TV+V G  I LT  E+ ++ LL+       + E    
Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       K + V I  LR+KL     G+  I TVWG GY
Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGY 227


>gi|226323728|ref|ZP_03799246.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
 gi|225207912|gb|EEG90266.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +E ++ S        + G D + + K + FD I++D+ L D+ GFE
Sbjct: 4   KILIVDDDPAICKLLEKVMHSNELETTTVNCGMDALSILKNHTFDLILMDIMLGDMEGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   ISTPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKRLRNQGISTPVMIVSGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G  S +         G  + L+ KE  ++ L         TK+M   H+
Sbjct: 124 LVLDNSDTLECGPFSYDTTTMRFYKNGEELILSSKESALLLLFMKHPQQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   I V+I +LR K+ +      YI T+ G GY
Sbjct: 184 WGNTVAVDDNAIMVYINRLRGKIEDDRQNPAYILTIRGLGY 224


>gi|220904946|ref|YP_002480258.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869245|gb|ACL49580.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 247

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/224 (36%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDKA+   +   L+S          G + I        D I+LDLGL D+ G +
Sbjct: 15  RILVIEDDKAIRALVTAALESRAMACITAGTGREAIAEASRAGPDVILLDLGLPDMDGTD 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---RR 118
           ++R +R   +  P+ +LS  S  +DKV  L +GADDY++KPF+ +EL+AR+RA +   R 
Sbjct: 75  IIRTVRQWSM-VPIIVLSARSEDDDKVAALDAGADDYLTKPFSIDELLARLRAALRRGRY 133

Query: 119 SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            RG+     S    G L ++  A +  V G  IHL   EY+++ LL+      LT +  L
Sbjct: 134 ERGNPDRDASFFENGPLRIDFAAGSASVNGQEIHLAPMEYKLLCLLARNAGKVLTHKTIL 193

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++       +  + VF+  LRKKL NAA   +YI T  G GY
Sbjct: 194 QAVWGSSLPQNLPSLRVFMATLRKKLENAAPRCDYIHTHVGVGY 237


>gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 597

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  ++  I   L +  + V +   GE G+E     ++  I+LD+ +  + G 
Sbjct: 1   MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR +   TP+ +L+  +S ED + GL +GADDY++KPF+ E+L+ARIRA++RR  
Sbjct: 61  SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S++  G L  +     V  Q   I+L+ KEY ++EL         ++   ++ L+
Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + P    +   I  LR+KL+ A   +  IET++  GY L+
Sbjct: 181 MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLK 223



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD     ++  +L+     V      +   ++      D ++LDL +    G E
Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLE 536

Query: 62  VLRALRV-AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  +K +  P+ +++  +      +   +GADD+ISKP    E++AR+   + RS
Sbjct: 537 LCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERS 596

Query: 120 R 120
           R
Sbjct: 597 R 597


>gi|324999757|ref|ZP_08120869.1| two-component system response regulator [Pseudonocardia sp. P1]
          Length = 251

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR++++ED+ A+A ++   L+ +   V V   G++G E      +D  +LD  L    G 
Sbjct: 20  MRVIVVEDEPAMADAVARGLRRDGIAVDVAYDGDEGSEKLSVTRYDVAVLDRDLPGRSGD 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   L  A   T V +L+   ++ DKV GL  GADDY++KPF+  ELVAR+RA+ RR+ 
Sbjct: 80  ELCDELVAAGGLTRVLMLTASGTLADKVEGLSRGADDYLAKPFDFPELVARVRALGRRAT 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++   +TV   G  + LT KE+ ++E+L       ++ E  L  ++D
Sbjct: 140 PAVPPTLAAGDLVLDPARRTVGRSGRPVELTRKEFGVLEVLLAAGGAVVSSEELLERVWD 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LRKKL   A     I+TV G GY
Sbjct: 200 ENADPFTTTVRVTVMTLRKKLGEPA----LIDTVVGAGY 234


>gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD  +   ++  L+ E   V     G + + +  +  + D ++LD GL D+ G 
Sbjct: 3   RILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGLPDLEGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR      PV +L+G +  + +V GL  GADDY+ KPF+ +EL+ARI+A++RRS 
Sbjct: 63  EVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRSG 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L ++L+A+   + G  + L+  E  ++ +L+       T+E  L  ++ 
Sbjct: 123 KEGRRYF--GPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E   +++D +I  LRKKL +      +IETV G GY
Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGY 219


>gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 246

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 19/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A +I   L++E F V     G   +   + ++ + ++LD+ L    G E
Sbjct: 20  RVLVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   RG    L   GDL ++   + V VQ   +HLT  E+ ++  L+      L++
Sbjct: 139 ATLAATAPRGATLRL---GDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSR 195

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++D  D    + +D  I  LR+K+     G + I TV G GY L   A+
Sbjct: 196 EQLLAEVWDWADASGTRTVDSHIKALRRKI-----GADRIRTVHGVGYALETPAQ 245


>gi|271964343|ref|YP_003338539.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270507518|gb|ACZ85796.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 116/226 (51%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD  +  ++   L      V     G  G+        D ++LDLGL D+ G E
Sbjct: 3   QLLLVEDDAQVRSALTRALTERGHAVASASAGMPGLTRAVADRPDLVVLDLGLPDLDGCE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR A  + PV + +      + VR L +GADDY+ KPF+   L ARIRA++RR R 
Sbjct: 63  VLRMLR-AVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
                + +V G L +   A+   + G  + LT KE+ ++  L++R    ++K   L  + 
Sbjct: 122 ADEGTAPVVVGGLHIEPAAREATLDGTPLGLTPKEFDLLHYLAVRPGQVVSKRELLTEVW 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              Y G D    K +DV +  LR+KL  +A   +Y++TV G G  L
Sbjct: 182 RMAYGGAD----KTVDVHLSWLRRKLGESAQRPHYLQTVHGVGVKL 223


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RIL+ +DDK +   ++  L+ E   +Y+ D   +G E LC F +  ++ +ILDL +  +
Sbjct: 4   IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNQNNYNLVILDLMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++R
Sbjct: 61  DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +    ++ +    L+++    TV   G  I+LTGKE ++++  +       T
Sbjct: 120 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           K     +++D     +   + V I KLRKK+   +    +I+TVWG GY
Sbjct: 180 KTQIFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 228


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD ++   I   L +E +NV   + G +GI+  K   +D IILD+ + ++ G+ V
Sbjct: 5   ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLDGYGV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + +R    S P+  L+ ++   D+++G +   DDYI+KPF+   LV R+ AI+RRS + 
Sbjct: 65  CKMIRKTS-SVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + + I    L +NLD  + E+ G  I LT KE+ +++ L  +    +T+E  L+ ++  
Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +I+D  I  +RKK++       YI+TV G GY L +N
Sbjct: 184 DYYGDTRIVDAHIKNIRKKITLP-----YIKTVKGIGYTLDKN 221


>gi|117921622|ref|YP_870814.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613954|gb|ABK49408.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGLDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L++    ++ 
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN  +DG+D    + IDV I +LRKKL++       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234


>gi|309780386|ref|ZP_07675137.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921089|gb|EFP66735.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V+V   G    E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L   R     TPV IL+    + DKV GL +GADDY+ KPF   ELVAR+ A++RR  
Sbjct: 61  TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   A+  I+ G L ++   + + V    + L+ +E+ ++ELL LR+   ++K    +
Sbjct: 121 DPTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQD 180

Query: 177 HLYD-----GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL       G    +V     I+V++ ++R+K+ ++   +  I TV G GY+L+  A
Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHS---EAEIVTVRGFGYLLQARA 234


>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
 gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
          Length = 242

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVR-KDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   +     ++  G L +N D+  V+ V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGY 224


>gi|302866110|ref|YP_003834747.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502668|ref|YP_004081555.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568969|gb|ADL45171.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315409287|gb|ADU07404.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E      +D +ILD  L  + G 
Sbjct: 1   MRVLVVEDERNLADAIARGLRKRGMAVDVAYDGDAGHEAAFVTRYDVVILDRDLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   L  +   T V +L+   ++ D+V GLQ GADDY++KPF  +ELVAR++A+ RR+ 
Sbjct: 61  RICADLAASGALTRVLMLTASVTVADRVEGLQLGADDYLAKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   + V   G  + LT KE+ ++  L   +   ++ E  L  ++D
Sbjct: 121 PAAPPVLEVADLVLDPARRVVSRGGVPLDLTNKEFGVLAELLKARGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   I+ V +  LRKKL    G    I+TV G GY
Sbjct: 181 ANTDPFTTIVRVTVMTLRKKL----GDPPLIDTVVGAGY 215


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++IED+  +    +  L+ E + VY    G +G  + + Y+ D IILDL +    G+E
Sbjct: 4   RIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQYS-NVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I   DL ++   + V V GH I LT KE++++ +++       ++   
Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  +++   E     + V + +LR+KL        +I TVWG GY    +  +ET
Sbjct: 183 LEQIWNFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFEPDGGNET 237


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  I G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R    + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V   G  + LT  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYE--FDAIILDLGLTDIP 58
           R+L++ED+  LA  +  +L+ E + V   ++ EDG + L  F++   D ++LDL L  +P
Sbjct: 3   RVLIVEDEPDLADPLAYLLRREGYEV---EIAEDGALALSAFHDRGADIVLLDLMLPGMP 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R LR++    P+ +L+   S  D V GL+ GADDY++KP++  EL+AR+RA++RR
Sbjct: 60  GTEVCRQLRLSS-HVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRR 118

Query: 119 SRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  L    +  G +++++D  TV V G+ I++  KE++++E+L       LT+   
Sbjct: 119 RTPDDADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV I ++R ++  +      + TV G GY
Sbjct: 179 IDRVWGTDYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGY 223


>gi|323140432|ref|ZP_08075361.1| KDP operon transcriptional regulatory protein KdpE
           [Phascolarctobacterium sp. YIT 12067]
 gi|322415117|gb|EFY05907.1| KDP operon transcriptional regulatory protein KdpE
           [Phascolarctobacterium sp. YIT 12067]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL++ED+  +   I+  L+  ++ V   +    G+ +   Y  D I+LDLGL D  G 
Sbjct: 6   FKILIVEDEANILSFIKANLEISDYQVICAETCALGMMMYASYHPDLIVLDLGLPDRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A  + P+ +LS  S   DKV  L  GA+DYI+KPF  EEL+ARIRA++R  R
Sbjct: 66  SLIQDVREAD-TVPIIVLSARSGEMDKVEALDLGANDYITKPFGTEELMARIRAVLRSHR 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+        DL ++ D + V V G+ I LT  EY ++  LS+     LT    
Sbjct: 125 YSEKNEGNHIGKFQFQDLMIDYDKRQVLVDGNEIDLTQTEYNILTFLSIHAGKVLTYAAI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  ++   D   VK + V +  +RKK+    G K YI    G GY  R  A+DE
Sbjct: 185 IQAVWGYSDYGSVKKLQVNMKNIRKKMGVTPGEKRYIVNELGVGY--RMLAEDE 236


>gi|313498672|gb|ADR60038.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 230

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 21/232 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   + L L  E F       GE+G  L     F  ++LD+ L  I G EV
Sbjct: 4   VLLVDDDRELTEMLSLYLAREGFQATAAGTGEEGEPLALSGHFQVVVLDVMLPGISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR +  
Sbjct: 64  LRRVR-ARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVQPQ 122

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
                +T      G L +    +        + LTG E+ ++E L+ +    ++K+ + L
Sbjct: 123 LMGEAITPEHVRSGALKMWPGRREAHWGDATLELTGSEFSLLEALARQAGQLISKQDLSL 182

Query: 176 NHL------YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L      YD R       IDV +  +R KL   A G ++I++V G GY+L
Sbjct: 183 NALGRPLTRYDRR-------IDVHVSSIRHKLGPRADGSSWIQSVRGMGYML 227


>gi|297537805|ref|YP_003673574.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257152|gb|ADI28997.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 226

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +E       + V V   GE   +L  + E+D I+LDLGL  + GF
Sbjct: 1   MRLLLVEDDLILKDGLERSFVKSGYAVDVICDGEGANKLLTYQEYDVIVLDLGLPKLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    +TPV IL+ +   +++V+GL  GADDY++KPF   EL AR+RA++RR  
Sbjct: 61  EVLKRLRARGSNTPVLILTALEDTQNRVKGLDLGADDYLTKPFELAELEARVRALIRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G L+ +   +        + L+ +E  ++ELL L+    ++K   + HL  
Sbjct: 121 SGGSAKISFGGLTFDTSNRQCMAGDIALSLSAREMALLELLMLKAAKVVSKTKIMEHLCS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V + +LRKKL+        I T+ G GY+L
Sbjct: 181 WDEEISENAVEVIVSRLRKKLNVF---DIEIRTIRGLGYLL 218


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K ++  I   L++ENF+V     G +     +   F   ILD+ L DI GF+
Sbjct: 3   KILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  K   P+ +L+  S   DK+ GL  GADDYI+KPF   E++AR++A +RRS  
Sbjct: 63  LCKIIR-KKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLNH 177
             G  Q+ ++  +L ++++ +   +Q   + LT  E+ +++LL  RK   + ++EMF   
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +         I V +  LR+K+ +     +YI+TVWG GY
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGY 223


>gi|269125937|ref|YP_003299307.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310895|gb|ACY97269.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 217

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ +   V V   G   +E     E+D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERVLADAIATGLRRQAHAVDVAYDGAGALERTSVNEYDVVVLDRDLPKVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L   +    + +L+    +ED+V GL  GADDY++KPF   ELVAR++A+ RR+ 
Sbjct: 61  DVCRDLAGRRYPARILMLTAAGDLEDRVAGLNLGADDYLAKPFAFAELVARVQALGRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++   + V   G  I LT KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 PPLPPVLERAGITLDPARREVHRDGRPIELTRKEFAVLEVLMRAEGAVVSSERLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL    G    IETV G GY L
Sbjct: 181 EHIDPFTNVVRVTMMTLRKKL----GEPQVIETVPGVGYRL 217


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA ++   L+ E + V +   G  G++  +  + D ++LD+ L  + GF V
Sbjct: 4   VLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +L+      D++ GL+ GADDYISKPF+  E +AR+RAI+RRS   
Sbjct: 64  CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122

Query: 123 AQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S++      G + V+  ++     G  ++L  KE+ ++  L   +   LT+++ L  +
Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV I  LR+K+        YI+TV G GY
Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGY 223


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++A+   ++  L+   ++V +   G   ++L +  ++DA++LDL L ++ G  
Sbjct: 3   RILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDGMS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R   I  PV +++      D++ GL+ GADDYI+KPF+  E++AR++A++RR   
Sbjct: 63  VLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYHE 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R      +   DL ++   K V+  G  + LT +EY+++   + R    + +E  L
Sbjct: 123 QSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      + +++D+ I  LR+K+         ++TV G GY + +
Sbjct: 183 TSVWGYDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGYTMSD 230


>gi|322434235|ref|YP_004216447.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161962|gb|ADW67667.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 243

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 17/234 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +  +++    SE + V V   G +   +C+  +  A++LDL L  I G ++
Sbjct: 4   ILVVEDDVRIQKALQRQFSSEGYAVRVVSEGTEAARVCREIKPVAVVLDLMLPGISGRDI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++   + TPV ILS +S + DKV  L+ GADDY++KPF+  EL+AR++A +RR+   
Sbjct: 64  CRQIKTDSVDTPVIILSAISEVADKVLLLEIGADDYVTKPFSPRELLARVQAAIRRAART 123

Query: 123 AQ-----------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
            +                 +L V G ++ +L    V+ +G  + LT  E++++       
Sbjct: 124 VEAQASAHAAGGAAADAEPALCVFGSVTADLLKMEVKREGVEVTLTAHEFKLLRYFLTHV 183

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  +T+E  L  ++     P  +I+D  + KLR+KL        +  TV G GY
Sbjct: 184 DRVITREELLQDVWGYNFFPTTRIVDNQVLKLRQKLEADPAHPVHFRTVHGIGY 237


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++AL   +   L++E + V     G++   L K    D +ILD  L  + G E+
Sbjct: 6   ILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGLSGIEL 65

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL AR+RA++RR+
Sbjct: 66  CRRLR-ARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLRRA 124

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +++ GDL V+ + K V   G  + L   EY+++E L  R     ++E  LN +
Sbjct: 125 LPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLLNGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +   + + +DV + +LRK L N     + I TV G GY L
Sbjct: 185 WGSQIYIDERTVDVHVGRLRKAL-NRGHETDPIRTVRGAGYAL 226


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L+ E + +     GE+ +EL    E+D I+LD+ +  + G E+
Sbjct: 7   LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVEM 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR  K +TPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR+   
Sbjct: 67  CQELRKKK-ATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASAT 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++V G L+++ DA  V V    I LT KEY+++  L+   +   ++E  
Sbjct: 126 KFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
           L  +++     +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGY 231


>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 246

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+V +   G D +   +  + D +ILDL L  I G E
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 73  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRT 131

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            A                 G LS+++  + V +    + LT  E+ ++  LS R     +
Sbjct: 132 VATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFS 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  ++         ++DV I  LR+KLS+   G  Y+ TV G GY
Sbjct: 192 RRQLLEAVWGDSWGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGY 240


>gi|88860970|ref|ZP_01135605.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88816898|gb|EAR26718.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 245

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 135/239 (56%), Gaps = 21/239 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  I+  L+ +++ V V + G+  +++ +    D +ILD  L  + G +V
Sbjct: 11  ILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLDGIDV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116
           L+A+R A  +T + + +    + D+V GL+ GADDY++KP     L  +IR       I+
Sbjct: 71  LKAVRPAFANTIIMVTARDEEL-DEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQTIM 129

Query: 117 RRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RS+      G +      GD S++  A++VE+    + ++  E+ ++ LL+ R   T+T
Sbjct: 130 KRSQDIESEVGRSSDSFQYGDFSIDKQARSVELNNKIVDISSNEFDLLWLLAERAGNTVT 189

Query: 171 KEMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++  +  L    YDG D    + +D+ + KLRKKL++       I+TVWG+GY+L ++A
Sbjct: 190 RDELIQALRGFDYDGFD----RTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGYLLVKSA 244


>gi|299067888|emb|CBJ39101.1| putative response regulator, CheY family [Ralstonia solanacearum
           CMR15]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +   L+   + V     G              +D +ILD+GL  +
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VR
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +L+  G L+ +   +   ++   + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVELSARELGLLEILLSRAGRLVSKEQLVDH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    +E     I+V++ +LRKK+         I TV G GY L
Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++    E F V++   G D  ++ +  + D +ILDL L    G EV
Sbjct: 18  VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++   P+ +L+    I+D+V GL +GADDY++KPF   EL+AR RA++RR   +
Sbjct: 78  TRRLRRSR-DLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++    +++N     V      I  T +E+ ++E   +     L+++M ++ ++   
Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWGYD 196

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  I++V+I  LR+KL +       ++TV G GY LR
Sbjct: 197 YMGDDNIVEVYIRHLREKLHDTP--PRLLQTVRGVGYTLR 234


>gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L + ++  L  E   V     G+ G+   +   + AIILD+ L    G 
Sbjct: 1   MRILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLLPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+   +I+D+VRGL SGADDY+ KPF   EL+AR+RA++RR+ 
Sbjct: 61  EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++ L    V   G +I LT   + ++E L    N  L+ +M  NH++ 
Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+V+I +LR+K+ +    K  +ETV G GY LR
Sbjct: 181 YDTPGTPNAIEVYIRRLRRKIDDPFEIK-LVETVRGAGYRLR 221


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 20/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           ++L+IEDD  + +++ ++L+++ + +     GE+G++  KF   FD +I+D+ + +I G 
Sbjct: 3   KLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQ--KFDSTFDLLIIDIMMPNISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R  K   P+  L+  S   DK+  L +G DDY+ KPF+  EL+ARI+A++RR R
Sbjct: 61  DVCRKIR-EKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCR 119

Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +         A S I    L+++     V   G ++ LT KEYQ++ LL      T + 
Sbjct: 120 VYDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFST 179

Query: 172 EMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++   +EP  +     I V I  LR KL    G  + I+TVWG+GY   E
Sbjct: 180 QNIFESVW---NEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   + L +   +DA++LDL L ++ G E
Sbjct: 6   KILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   ++ GL+ GADDY+ KPF+ +EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQEA 125

Query: 122 HAQSLIVTGDL----SVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++ + G L     +++D  A+ V + G  I LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++  + E     ++  I +LR K+ + A     I TVWG+GY
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGY 229


>gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074]
 gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S + T G L V+  A+ V+  G  + LT KE+ ++E L LR    ++K   L H++
Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL     G   I TV G GY L
Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAQAIRTVRGMGYRL 217


>gi|257791289|ref|YP_003181895.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490425|ref|ZP_07948908.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325831281|ref|ZP_08164573.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
 gi|257475186|gb|ACV55506.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910469|gb|EFV32095.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325486882|gb|EGC89329.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1]
          Length = 223

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 114/220 (51%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD A+  S+  +L+SE +     D  +  +EL +   FD  ++D+ L    GF
Sbjct: 1   MRMLLVEDDAAIVASLTDLLRSEGYETRCADGQDAAVELLRSERFDLALVDVALAQGNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  A +    +  V  L+        V GL  GADDYI+KPF   EL++RIR+++RR+ 
Sbjct: 61  AVCAAAKACDPAPAVIFLTASDDEFSTVAGLDMGADDYIAKPFRARELLSRIRSVLRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A SL+  GD+ ++     V   G  + LT  EY+++ L +  +   +T+E   N ++D
Sbjct: 121 A-ASSLLRLGDVEIDAGTACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWD 179

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E      + V++ +LR K+ +       I TV G GY
Sbjct: 180 SAGEYVSDNTLSVYVKRLRDKVEDDPAEPRLILTVRGLGY 219


>gi|207721946|ref|YP_002252384.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206587118|emb|CAQ17702.1| response regulator protein [Ralstonia solanacearum MolK2]
          Length = 243

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 18/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  +   L +    V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   KVLLIEDDDRLAQLVSEYLGNYELTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 127

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +         ++V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 ALPAAEPAVPHDDVLVFGELAISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +E
Sbjct: 188 DILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 243


>gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 234

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  LA  I   L+ E + +   + GE+ +E  K  +FD IILD+ L  I GFE
Sbjct: 7   QILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      PV +L+  S+  D++ GL +GADDY+ KPFN +E + R+  ++RRS  
Sbjct: 67  VCERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSAW 126

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +      GD  V L +     +   I LT  E +M+ L   R+   + + + L  
Sbjct: 127 YRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILES 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    + E + +D FI +LRK          + +TV G GY    N 
Sbjct: 187 VWGYSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRNP 234


>gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 237

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   +++ L+++ + V     G++G++L    + D +ILD+GL D+ G E
Sbjct: 14  RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VL  LR      PV +L+  +   +KVR L +GA+DY++KPF  +EL+AR+RA++R RS 
Sbjct: 74  VLEQLRQWS-QVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLRTRSV 132

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  V   G L V+L  + V + G  + LT KEY ++ LL       +T+   L  +
Sbjct: 133 PSDGTPPVFDDGHLHVDLVRREVALDGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEI 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    + +   + + + KLR KL ++A    Y+ T  G G
Sbjct: 193 WGPTHQHDTHYLRILVGKLRHKLGDSALDSRYLFTEPGVG 232


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +L   +   L+ E + V     GE+ + L    + D +ILD  L  + G EV
Sbjct: 5   VLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLSGIEV 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +L+      D++RGL +GADDY+SKPF+  EL+AR++A++RR++
Sbjct: 65  CRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALLRRAQ 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+  +   D+ ++L A  V   G  IHL   E+++++ L        ++E  LN ++
Sbjct: 125 PTSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L N     + I TV   GY L  N 
Sbjct: 185 GPDIYVEPRTVDVHIRRLRKAL-NGEASTDLIRTVRAAGYALDTNP 229


>gi|331268666|ref|YP_004395158.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329125216|gb|AEB75161.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 233

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD  +A  I   L  EN++V  +  G +G++     ++D +ILD+ L ++ GF 
Sbjct: 4   RVLVIEDDIEIASIIRKHLTRENYDVNWSSTGSEGLKDFNKDKYDLVILDIMLPEMDGFM 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R +G
Sbjct: 64  VCKNIRLIS-NVPILILSAKKQELDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 ---HAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +Q   V      L +  D   V V    I LT KE+ ++ L++  +N   TK+   
Sbjct: 123 DNKKSQKQDVWSYKQGLKIIKDEMRVTVNDDEIELTAKEFALLVLMAQNENKVFTKKDLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++   +      I V I +LR+K+        YI+TVWG GY
Sbjct: 183 ENIWHQNNLEGNNTITVHIKELRQKIKEDVKHPQYIQTVWGTGY 226


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A  +   L ++ + V     G +G+E  K   +D +I+D+ L  + G+ 
Sbjct: 4   RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMDGYS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + +++R      P+ I+S  +   DK++GL+ GADDY++KPF+  E+ ARI +++RR + 
Sbjct: 64  LCQSIRWVS-DVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122

Query: 121 ---GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 Q  I    G LS+N + K   +    ++LT  E+ ++ +L+       TK+   
Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            H++   D      I V I +LR KL   +    +IET WG GY
Sbjct: 183 EHIWHEEDIESSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGY 226


>gi|238026960|ref|YP_002911191.1| osmolarity response regulator [Burkholderia glumae BGR1]
 gi|237876154|gb|ACR28487.1| Hypothetical protein bglu_1g13360 [Burkholderia glumae BGR1]
          Length = 244

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)

Query: 23  ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNVYV    E+   + K +    FD ++LDL L    G  + R LR +   TP+ +L+
Sbjct: 32  QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
                 D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+
Sbjct: 89  AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189
            S+NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + 
Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +DV I +LRK +    G   +I+TVWG GYV 
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|171915205|ref|ZP_02930675.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Verrucomicrobium spinosum DSM 4136]
          Length = 235

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/205 (35%), Positives = 116/205 (56%), Gaps = 1/205 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  L   + L L+S+ + V+    G  G+    F   D I+LDLGL D+ G E
Sbjct: 11  RALVVDDEVQLRRLLRLALESKGYEVFEAGTGSLGLSEAAFRHPDVILLDLGLPDMDGLE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR     TPV +LS       KV  L++GADDY++KPF+  EL AR+ AI RR + 
Sbjct: 71  VLKRLR-EWTETPVLVLSVRDQEAIKVAALENGADDYVTKPFSTAELAARLGAIQRRRKT 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G L ++L A+ V++ G  + LT  EY +++LL+      +T++  L  ++  
Sbjct: 130 PEEPSLELGKLFLDLAAREVKLAGAELKLTPIEYNLLKLLARNLGRVITQKQILKDVWGP 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAG 206
               + + + V++  LRKKL +AAG
Sbjct: 190 NATEQAQYLRVYVAHLRKKLGDAAG 214


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E   +DV I +LR K+ +    K  I TV G GY L+  A
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPFENK-LIMTVRGMGYRLQAEA 222


>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  +   +   L  E F + +    EDG  L +       D I+LDL +    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMI---AEDGKALNRILLRETVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPQEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ + +  +  +L  E + V V D G   +        D ++LDL L  + G E
Sbjct: 3   RILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LRV K S P+ +L+   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRELRV-KSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G   +S++  G + ++++   V V+G  + +  KE++++E+L       +T+   ++ 
Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+         + TV G GY
Sbjct: 182 IWGEDYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGY 223


>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 247

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 140 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D+K +   +    K  NF V     GE  ++  +  EFD I+LD+ +    GF+
Sbjct: 3   KVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI AI+RR   
Sbjct: 63  VCRQVRTFS-NVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  + +  +L ++L+  TV++    I LT KE +++  L+  +N   T+E  L+ +
Sbjct: 122 KNDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +D  I +LR KL N    K  I+T+WG GY
Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGY 222


>gi|167766452|ref|ZP_02438505.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1]
 gi|167711861|gb|EDS22440.1| hypothetical protein CLOSS21_00958 [Clostridium sp. SS2/1]
          Length = 245

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++DDK L   ++++    N   Y T    DG+E     +   D I+LD+ +  + G
Sbjct: 25  KILVVDDDKEL---VKMLCSYFNMKQYETITATDGMEALNKIKMKPDIILLDINMPRMDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R +K+  P+  L+     +DK+ GL SG DDYI+KPF+  EL ARI   ++R 
Sbjct: 82  IEVCRLIR-SKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKRE 140

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H Q        ++ ++   K V + GHR+  T  EYQ+IE LS+       KE     
Sbjct: 141 ERHQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQ 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     E + + I   + ++RKK+++ +  K YIETVWG GY
Sbjct: 201 VCGYDAEGDSRTITELVRRIRKKIADYS-EKEYIETVWGIGY 241


>gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E ++V   D+ +DG+E  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWDV---DIAKDGVEAVEMFKANPSSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  KKDGMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQSLI----VTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRS      HA + I    VT  L ++ D + V      +  LT KE+ ++  ++ +  
Sbjct: 119 YRRSHLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51]
 gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L++D++++  ++E +++   +     D G + +E+      D +ILD+ L  + GF
Sbjct: 1   MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R      P+  LS    I DK  G + G DDY+ KPF+  EL  RI+A++RR  
Sbjct: 61  AVCEKIRSFS-DVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPH 119

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  ++  ++  GDL + L+   V   G ++ LT KE++++  L+  +    T+E  
Sbjct: 120 RLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++    E +   + VFI ++R+K+        YI TVWG GY  +
Sbjct: 180 LDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKFK 227


>gi|330819658|ref|YP_004348520.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327371653|gb|AEA63008.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 220

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  +   +E  L+ E F V +V D G+      +   +  ++LDLGL    G
Sbjct: 1   MRVLLVEDDPLIGSGLEEGLRHEGFAVDWVRD-GDAASLALRTTPYGLMLLDLGLPGRDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L +LR    + P  +++   ++ D++ GL +GADDY+ KPF  EEL+ARIRA+ RR 
Sbjct: 60  LSLLSSLRRRDDALPAIVITARDALSDRIAGLDAGADDYLVKPFALEELLARIRAVNRRH 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+ +  G L ++     V + G  + L+ KE+ M+  L +     +++E F   LY
Sbjct: 120 SGRAQTTLSAGALRLDPVRHQVWLGGDEVTLSPKEFVMLHELMVDPGAVISREQFEERLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E E   + V I  LRKKL + A     I TV G GY + E A
Sbjct: 180 SWGEEIESNAVQVHIHNLRKKLGHVA-----ILTVRGVGYRISEAA 220


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227


>gi|190895522|ref|YP_001985814.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
 gi|190699467|gb|ACE93551.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
          Length = 230

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V      E   +       D ++LDLGL D PG 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVQEVPNAESARQSVADDMPDLVVLDLGLPDTPGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWRDGGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V+I ++R+K+        YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYIRQIRQKIEKIPDQPYYITTETGVGYRLRE 228


>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
 gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   +   L  E F+V   + G+    L      D I+LDL +    G  
Sbjct: 10  KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPT 129

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     +++  G  + +L A+T+        LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 190 -LAQLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDDKA+A ++ L+L+SE F V       D I      +FD  ++D+ L D  GF V
Sbjct: 4   IFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISLPDGNGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              ++  K   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S   
Sbjct: 64  CTEIK-EKQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGSS 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S  + G L V+  +  V+ +G  I L+  EY+++ +      + +T+   L+ L+D  
Sbjct: 123 PSSFEICG-LHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELWDAA 181

Query: 183 DE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E      + V+I +LR+K+ N       I TV G GY L
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  LK E FNV     G++ I++    + D ++LD+ L +  G EV
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 65  CREIR-KKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNIA 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   + I  G L++  DA  V  +   I LT +E++++  L       +T+E  L
Sbjct: 124 PAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYLR 230


>gi|284029345|ref|YP_003379276.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808638|gb|ADB30477.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 226

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED++ L  ++   L    + V     G + +E      +D  ILD+ L D  G ++ R
Sbjct: 1   MVEDEEGLVSALRSGLGRAGYAVDTALTGAEAVEKLATTAYDLAILDITLPDTNGLDLCR 60

Query: 65  ALRVAKISTP------VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           A+R  +I         V +L+  +S+ D+VRGL  GADDY++KPF   EL+ARIRA++RR
Sbjct: 61  AVRRGEIEVASGRELRVLMLTARASLADRVRGLDEGADDYLTKPFALVELLARIRALLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  + +  G+L ++         G  + LT KE+ ++  L  R    ++ E  L H+
Sbjct: 121 DVTNGTTQLHVGELVLDSSRHLATRGGRELSLTLKEFGVLRYLMSRPGHVVSAEELLEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P  + + V +  LR+KL+   G +  +ETV GRGY LR
Sbjct: 181 WDENADPFTQSVRVTVGTLRRKLTQ-EGEEPLLETVIGRGYRLR 223


>gi|217978955|ref|YP_002363102.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504331|gb|ACK51740.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 230

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+ A+   +   L+++ F +                + D IILDLGL D PG E+
Sbjct: 8   ILIIDDEPAIRKLLRTGLQTQGFRISDAPSARLARAALAESKPDLIILDLGLPDTPGLEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR  R  ++  PV +LS  +     V+ L+ GADDY++KPF   EL+ARIR  +R    +
Sbjct: 68  LRGWREQRLDVPVVVLSSRTDEAGIVQALELGADDYVTKPFGMNELLARIRVALRHRLQQ 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +   GDL+V+L  + V V G  + L+ KEY ++ LL       LT    L  ++ 
Sbjct: 128 QGERPVFEIGDLTVDLVRRIVRVGGREVKLSPKEYDLLRLLVQHAGRVLTHHFMLREIWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P+   + V++ +LR+KL        YI T  G GY L+
Sbjct: 188 DAQDPQY--LRVYVRQLRQKLEQNPEQPKYILTETGVGYRLQ 227


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S I+ G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      +IET+ G GY
Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226


>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+++A  +   L++++F V      E+  E  +    D +ILD+ +    GF  
Sbjct: 6   ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R AK   P+  LS  S+  DK+RGL  G DDYI K  +  E+VAR++A++RRS  +
Sbjct: 66  CRRIR-AKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASN 124

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L++NL  + + V G  + LT KEY++++L         + +  L+ L+
Sbjct: 125 QPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  +     + V + +LR+K+        YI  VWG GY
Sbjct: 185 DGVGDKHT--VRVHLSRLREKIEANPNDPQYIVNVWGIGY 222


>gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 236

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V     G D +     +  D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +  I++ +I  LR+K+         I+T  G GYVLR   K
Sbjct: 189 EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLRTAEK 235


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 19/232 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           I +++D+K +   IE+ LK E +N   T    DG+ L    EF  D ++LD+ +  + G 
Sbjct: 4   IFIVDDEKRIRDLIEMYLKKEGYNT-TTFESADGV-LSAIREFMPDLLVLDIMMQGLDGL 61

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++ + +R  KIS  P+  +S  S   D++ GL+ GADDY++KPF+  ELV RI+ I++R 
Sbjct: 62  DLCKEIR--KISEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRT 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S  H   ++ T DL + +  + V+  G  I LT KEY+++E L    N  L++E  + 
Sbjct: 120 TKSSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIE 179

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    YDG D    + +D  I +LRKKL  A   +  I+TVWG GY + +N
Sbjct: 180 SIWGYDYDGYD----RNVDDTIKRLRKKLKTAK-SRVVIKTVWGYGYRIDDN 226


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 227


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|330898407|gb|EGH29826.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+ D+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVQDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR A+   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLR-ARQDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKVDLPYPVK-LIHTVRGIGYV 218


>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     Y  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +R +R +  + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIR-SWSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +G  Q   S    G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +V  + V++  LRKK+ +      YI+T  G GY
Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGY 227


>gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 224

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + L L+SE   +   +  + G+      + D +ILDLGL D  G   
Sbjct: 4   ILIVEDEKEIRRFVRLALESEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPDGDGNAF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +R +R    S PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  R 
Sbjct: 64  IREVRQWS-SMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVALRRHQRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L+  G++SV+L A+ V   G  +HLT  E++++ LL       LT+   LN ++  
Sbjct: 123 QPEPLVQFGEVSVDLAARHVLRSGEEVHLTPTEFRLLSLLLNNAGKMLTQRQLLNQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL        ++ T  G GY
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPTHLLTETGIGY 220


>gi|329905993|ref|ZP_08274314.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547381|gb|EGF32210.1| Two-component system response regulator QseB [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 219

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  + ++ L+   + V      +      + +++  ++LDLGL    G 
Sbjct: 1   MRLLLVEDDPQLGRATQIGLEQAGYAVDWVQSADSARTAVRLHQYGCLLLDLGLPGEDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV I++    I D++ GL +GADD+I KPF+ +EL ARIRA  RR+ 
Sbjct: 61  SVLRKLRAGGFAQPVLIVTARDQISDRISGLDTGADDFIIKPFDLDELAARIRAASRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  GD+++++ A+ V   G  + LT KE+ ++ LL       L +E     LY 
Sbjct: 121 GRSVDAICHGDIAIDVSARQVRQHGQPVALTAKEFGILLLLVEHAGQVLAREQLEETLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I V I  LRKKL     GK  I TV   GY +
Sbjct: 181 WGEEIESNAIQVHIHHLRKKL-----GKALIRTVHAVGYTI 216


>gi|319403893|emb|CBI77479.1| two-component response regulator [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 228

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G    +   +D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHTADIAYDGDTGYTFAETVNYDVMVIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY++KPF   EL+AR+  + RR  
Sbjct: 61  SIVTELRAKGIETPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGDKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPEK 226


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E +++ V   G + + + +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K+  LT+E+ L+ +
Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE F+V   + GE+ I L      D IILD  +  + G E
Sbjct: 7   QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  + +   PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  +    ++  D++++ +   V    + + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L+ + GG + I TV G GY L
Sbjct: 187 W-GRDIYVDTRTVDVHIARLRKALT-SHGGDDPIRTVRGAGYAL 228


>gi|115351977|ref|YP_773816.1| osmolarity response regulator [Burkholderia ambifaria AMMD]
 gi|121601171|ref|YP_993296.1| osmolarity response regulator [Burkholderia mallei SAVP1]
 gi|124384064|ref|YP_001029261.1| osmolarity response regulator [Burkholderia mallei NCTC 10229]
 gi|126439716|ref|YP_001059384.1| osmolarity response regulator [Burkholderia pseudomallei 668]
 gi|126448269|ref|YP_001080804.1| osmolarity response regulator [Burkholderia mallei NCTC 10247]
 gi|126455359|ref|YP_001066655.1| osmolarity response regulator [Burkholderia pseudomallei 1106a]
 gi|134276984|ref|ZP_01763699.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|134295968|ref|YP_001119703.1| osmolarity response regulator [Burkholderia vietnamiensis G4]
 gi|161524506|ref|YP_001579518.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|170699751|ref|ZP_02890785.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171320810|ref|ZP_02909815.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060899|ref|YP_001808551.1| osmolarity response regulator [Burkholderia ambifaria MC40-6]
 gi|217421794|ref|ZP_03453298.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221209186|ref|ZP_03582178.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|221215040|ref|ZP_03588007.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|226197493|ref|ZP_03793070.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812712|ref|YP_002897163.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238562218|ref|ZP_00440797.2| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242317900|ref|ZP_04816916.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|251766642|ref|ZP_02264532.2| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254178039|ref|ZP_04884694.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|254179405|ref|ZP_04886004.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|254198234|ref|ZP_04904656.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|254206419|ref|ZP_04912771.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|254252143|ref|ZP_04945461.1| Response regulator [Burkholderia dolosa AUO158]
 gi|254260987|ref|ZP_04952041.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
 gi|254297288|ref|ZP_04964741.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|254358171|ref|ZP_04974444.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|115281965|gb|ABI87482.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|121229981|gb|ABM52499.1| DNA-binding response regulator RisA [Burkholderia mallei SAVP1]
 gi|124292084|gb|ABN01353.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10229]
 gi|124894752|gb|EAY68632.1| Response regulator [Burkholderia dolosa AUO158]
 gi|126219209|gb|ABN82715.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 668]
 gi|126229001|gb|ABN92541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106a]
 gi|126241139|gb|ABO04232.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10247]
 gi|134139125|gb|ABO54868.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|134250634|gb|EBA50713.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|147753862|gb|EDK60927.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|148027298|gb|EDK85319.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|157807187|gb|EDO84357.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|160341935|gb|ABX15021.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|160699078|gb|EDP89048.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|169654975|gb|EDS87668.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|170135342|gb|EDT03636.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093932|gb|EDT39048.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171993416|gb|ACB64335.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|184209945|gb|EDU06988.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|217395536|gb|EEC35554.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221164976|gb|EED97455.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|221170924|gb|EEE03379.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|225930872|gb|EEH26882.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506008|gb|ACQ98326.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238523088|gb|EEP86529.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242141139|gb|EES27541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|243065036|gb|EES47222.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254219676|gb|EET09060.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
          Length = 244

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)

Query: 23  ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNVYV    E+   + K +    FD ++LDL L    G  + R LR +   TP+ +L+
Sbjct: 32  QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
                 D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+
Sbjct: 89  AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189
            S+NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + 
Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +DV I +LRK +    G   +I+TVWG GYV 
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG- 59
           MRIL++EDD  LA  +   L    +   V   G   +E  +   +D ++LDL L  I G 
Sbjct: 1   MRILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGG 60

Query: 60  -FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
             EV R +R      P+ +L+ + S+  KV GL +GADDY+ KPF+  EL+AR+RA++RR
Sbjct: 61  GMEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRR 120

Query: 119 S-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + R  A  L   G L ++   +T    G  I LT KEY ++E L       ++    ++H
Sbjct: 121 APRADAPVLEAAGVL-LDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDH 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D   +    ++  +I  LR KL+   G    IET  G GY++
Sbjct: 180 AWDTNYQGVSNVVQTYIRYLRVKLAE-PGLPEVIETRRGYGYLI 222


>gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 233

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ ++ + +   LK+  +       G+  I     +  D ++LDLGL D+ G EV
Sbjct: 6   VLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHNPDIVLLDLGLPDMDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116
           ++ +R +  S P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R       ++
Sbjct: 66  IKKIR-SWSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLTMM 124

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +R      S+ + G+L ++  A    +    +HLT  EY+++ LLS      LT      
Sbjct: 125 QRFSPTEASVFINGELRIDYAAGCAYINSEELHLTPIEYKLLCLLSKNTGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++    + ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 NIWGSNWDNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 37  ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGFAV 96

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI +I+RR  RG
Sbjct: 97  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGRG 155

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 156 SATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVPR 215

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 216 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR   
Sbjct: 63  ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 217


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +A  ++  L+ +   V     G++GIE  K    D I+LD+ + DI G+E
Sbjct: 3   KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEMP-DLIVLDIMMPDIDGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R   I  P+  LS   S  D+++G   G DDY+ KPF+ +EL+ARI A +RR + 
Sbjct: 62  VCRKIRDTVIC-PIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++L+   +++++L ++ V V+G+ I LT KE+ ++ELLSL      +KE  
Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   I  +R K+        YI+TVWG GY
Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGY 225


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K+ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--KWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+V   GE+ ++       D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         S I  GDL ++ +A  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR N ++E
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235


>gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 223

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M  L+++DD  +A ++   L S+ + V V   G DG+        D I+LD+ L    G+
Sbjct: 1   MHALVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIMLPGHNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR   I TPV +L+      D+   L +GADDY+ KPF+   L A +RA++RR  
Sbjct: 61  VVVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL V+    TV      I LT +E+ ++E L    +T ++K   +  ++D
Sbjct: 121 RERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V++  LRK++ +   GK  IETV G GY LR
Sbjct: 181 ENFDGDANIVEVYVGYLRKRI-DTPFGKRSIETVRGAGYRLR 221


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S I+ G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      +IET+ G GY
Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226


>gi|15890951|ref|NP_356623.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15159265|gb|AAK89408.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 217

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L  ++   + +    V +   LG D +       +  I+LD+ L D  G
Sbjct: 1   MRVLLVEDDYVLGEALRDHVAAAGHAVDWFKTLG-DAMAATLTMGYGLILLDMRLPDGEG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L++LR    +TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  ITLLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVSRRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +  +I    + +N  A+ + V G    L+ +E+ ++E L       ++K    + LY
Sbjct: 120 EGRSAPVIRLPGIEINQVARNITVDGTAQTLSAREWAVLEKLVEHPGAVVSKAQLHDTLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   E E   ++V+I +LRKK+     G + +ETV G GY ++
Sbjct: 180 EFGAEIESNTVEVYISRLRKKI-----GHDRVETVRGVGYTIK 217


>gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 230

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + LKS  ++V     G D +        DA++LDLGL D+ G E
Sbjct: 3   RILVVDDEPQILRALRINLKSRTYDVETVANGVDALASAARRLPDAVLLDLGLPDMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+  LR    + P+ +LSG +  ++K+  L +GADD+++KPF  EEL+AR+RA++RR + 
Sbjct: 63  VILGLR-GWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRRHQQ 121

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G   S +  G   ++L A +V   G  + LT  E+ ++E+L       ++    
Sbjct: 122 ANAGATGAETSSVRLGSCDIDLVAHSVARGGDPVRLTRTEWALLEVLLRHPGQLVSTSRL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      E   +   + +LR+KL +      ++ T +G GY
Sbjct: 182 LADVWGNSHTGEAGYLRFHMARLRRKLEDDPQNPRHLMTEYGTGY 226


>gi|167969026|ref|ZP_02551303.1| putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium tuberculosis H37Ra]
 gi|215444716|ref|ZP_03431468.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T85]
          Length = 195

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 1/182 (0%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           ++DA++LD+ L  I GFEV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPF
Sbjct: 8   DYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPF 67

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           N +EL AR+RA+ RR        +  GDL ++     V      I L+ KE+ ++E L  
Sbjct: 68  NLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIR 127

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R     T+   L   +D   E    I+DV+I  LR K+    G  + +ET+ G GY LR+
Sbjct: 128 RPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRK 186

Query: 224 NA 225
           + 
Sbjct: 187 DG 188


>gi|32267196|ref|NP_861228.1| hypothetical protein HH1697 [Helicobacter hepaticus ATCC 51449]
 gi|32263249|gb|AAP78294.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 226

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L  +I  ML   ++   + +  +DG        +D ++ D  L+D  G 
Sbjct: 1   MRILVIEDDPTLCKNIAEMLNERSYQTDIAENLKDGEYFISIRNYDLVLADWDLSDGCGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  ++     TPV I+S  +S E+++R  + GADD++SKPF+ E L+ RI+A   R R
Sbjct: 61  DIIAQVKEKSPRTPVIIISAQTSAENEIRAFKEGADDFVSKPFSLEVLLIRIQA---RLR 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I   DL +N D + +  +G  I + GK ++++  L+  ++  ++KE  L+ ++ 
Sbjct: 118 FWGSSVIEIEDLVINPDEEKITYRGQEIEVKGKPFEVLTHLARHRDQIVSKEQLLDAIW- 176

Query: 181 GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +EPE+    +I+V I ++R+K+         IETV  RGY
Sbjct: 177 --EEPELVTPNVIEVAINQIRQKMDKPL-NIGTIETVRRRGY 215


>gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia
           glossinidia endosymbiont of Glossina brevipalpis]
 gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           ++LL++DDK L   ++ +L+ E F + V   GE    L K  +  D ++LD+ +    G 
Sbjct: 3   KLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQA--LSKLNDTIDLLLLDIIMPKKNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+ +R  K   P+ +L+   S  DK+ GL+ GADDYISKPFNK ELVARI+AI+RRS 
Sbjct: 61  DTLKEIRKNKQHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAILRRSY 120

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q      S I    L++N   +        ++LTG E+ ++ LL+      +++E  
Sbjct: 121 LFNQKILDNKSTIFVDLLNINPGRQEAYFNNIYLNLTGTEFSLLFLLAKNLGNVVSREYL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   +  P  + ID+ I  LRKKL +    + + +T+ G+GY++
Sbjct: 181 SKEILGKKLNPFDRAIDMHISNLRKKLPSRKDSRPWFKTLRGKGYLM 227


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR--- 120

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           H+Q           S +  G L ++ DA     +G  I LT +E++++  L+      +T
Sbjct: 121 HSQVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 181 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|330817288|ref|YP_004360993.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
 gi|327369681|gb|AEA61037.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
          Length = 244

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)

Query: 23  ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNVYV    E+   + K +    FD ++LDL L    G  + R LR +   TP+ +L+
Sbjct: 32  QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
                 D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+
Sbjct: 89  AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189
            S+NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + 
Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +DV I +LRK +    G   +I+TVWG GYV 
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 236

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 120/236 (50%), Gaps = 21/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ L  +I+L L+ E + V     G+  ++  K   F+ IILD+ + +I GF+
Sbjct: 6   RILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDGFQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R+     P+  L+  ++ ED++ GL+ GADDY+ KPFN EEL+ R+  +VRR   
Sbjct: 66  VAETIRLENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRRG-- 123

Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIH--------LTGKEYQMIELLSLRKNTT 168
                 + GD      S  +  KT+      +H        LT KE  +++LL  R+N  
Sbjct: 124 ------MKGDDLKELNSYQIGDKTIYFNSFELHHADGTITALTKKETMLLKLLIERRNEA 177

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++E  L  +++    P  + ID FI   RK          Y  ++ G GY   +N
Sbjct: 178 VSREQILETVWNYDVYPSTRTIDNFILTFRKYFEPDQKNPIYFHSIRGVGYKFTDN 233


>gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661]
 gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F+V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLID-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDHLRLNPGRQEASFDSLTLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+++LA  +  +L+ E F+V +   G   +        D ++LDL L  + G +V
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKRLRAVS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGET 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++ +G + ++++  TV V G  I +  KE+ ++E L       LT+   ++ ++
Sbjct: 123 IEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV I +LR K+        ++ TV G GY
Sbjct: 183 GADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGY 222


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++ED+ ++   I L L+   + V   + GED + L   +  D ++LDL L  I G 
Sbjct: 6   VKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + IL+      DK+ GL+ GADDY+ KPFN  EL+ARI+A++RR  
Sbjct: 66  EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   ++    G L ++  A  +      + LT  EY ++++        L +E  LN +
Sbjct: 126 RYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I +LR+K+ +      YI+T+WG GY
Sbjct: 186 WGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGY 226


>gi|309782919|ref|ZP_07677639.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA]
 gi|308918343|gb|EFP64020.1| DNA-binding response regulator TctD [Ralstonia sp. 5_7_47FAA]
          Length = 233

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     ++V + +LRKKL   AG    I TV G GY+L
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218


>gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 120/239 (50%), Gaps = 25/239 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M++L+IED+K+++  + +  + E ++V       DGIE    +      +D I LDL L 
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDV---SFAYDGIEAVDMFNEDPESWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+
Sbjct: 58  KKDGMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117

Query: 116 VRRSRGHAQ--------------SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIEL 160
            RR+   AQ                I T    +N + +   + G  I  LT KE++++  
Sbjct: 118 QRRAHTEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNA 177

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 178 LAQKPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGY 234


>gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 225

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  ++  L +  F V V   G    +      FD ++LD+GL  + GF+
Sbjct: 4   RILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A  + PV IL+   S+ D V GL  GADDY++KPF  EEL+AR++  + R+R 
Sbjct: 64  VLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERAR- 122

Query: 122 HAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    V     + LD +T  V + GH + L+ +E+ + E         L+++  L  ++
Sbjct: 123 PAPDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVW 182

Query: 180 DGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                       ++DV++  LR+KL     G ++I TV G GY L
Sbjct: 183 GSEYSAAATSSNVVDVYVRYLRRKL-----GPDWIATVRGAGYRL 222


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + I + L  + +N+     G++ ++  K + F  IILD+ + ++ G+E
Sbjct: 4   KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R   ++ P+ +L+  +   DKV+GL  GADDY++KPF  EEL+AR+ A++RR+  
Sbjct: 64  VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +   +L +++D   V VQ + +HLT KE+++++LL L       ++  L  +
Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I  +R KL         IETVWG GY L+E
Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228


>gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 216

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 212


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 128/223 (57%), Gaps = 10/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   +   L  E + V     G + +E+  FYE      +ILD+ +  +
Sbjct: 4   VKILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEI--FYEDKEIALVILDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V R +R +   TPV +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWQVCREIRQSS-QTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS    A+ +I  G + +N  A  V+ +G +I L+ KE++++      +   L++E  LN
Sbjct: 121 RSHVLGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++     + + ID  + KLR KL +     NYI+T+WG GY
Sbjct: 181 NVWNYDYFGDARTIDTHVKKLRNKLGDKG---NYIKTIWGMGY 220


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S I+ G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      +IET+ G GY
Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226


>gi|78066718|ref|YP_369487.1| osmolarity response regulator [Burkholderia sp. 383]
 gi|107028883|ref|YP_625978.1| osmolarity response regulator [Burkholderia cenocepacia AU 1054]
 gi|116689959|ref|YP_835582.1| osmolarity response regulator [Burkholderia cenocepacia HI2424]
 gi|170733298|ref|YP_001765245.1| osmolarity response regulator [Burkholderia cenocepacia MC0-3]
 gi|254247957|ref|ZP_04941278.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|77967463|gb|ABB08843.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
 gi|105898047|gb|ABF81005.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648048|gb|ABK08689.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124872733|gb|EAY64449.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|169816540|gb|ACA91123.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|325523540|gb|EGD01847.1| osmolarity response regulator [Burkholderia sp. TJI49]
          Length = 244

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)

Query: 23  ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNVYV    E+   + K +    FD ++LDL L    G  + R LR +   TP+ +L+
Sbjct: 32  QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
                 D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+
Sbjct: 89  AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189
            S+NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + 
Sbjct: 149 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 206

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +DV I +LRK +    G   +I+TVWG GYV 
Sbjct: 207 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ + +L    + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR  +   P+ +L+  ++  DK++GL +GADDY+++PFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V   + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           V R  R+ K+ +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR  
Sbjct: 65  VCR--RIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ +I   +L +++++  + V+G  +    KE +++  L+   N   T++  
Sbjct: 123 VTTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      + + IDV + +LR+KL+ A+  K  ++TVWG GY
Sbjct: 183 LDEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226


>gi|307727553|ref|YP_003910766.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307588078|gb|ADN61475.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ S+   L S    V     GE    + +  ++  +ILD+GL  + G 
Sbjct: 9   MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV +L+   S+E++VRGL  GADDY++KPF   EL AR RA++RR  
Sbjct: 69  EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGH 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +    G L  +   ++  + G  + LT +E  ++E+L LR    + KE     ++ 
Sbjct: 129 GQEATRAQCGTLVYDSVDRSFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL  ++ G   I T+ G GY+L
Sbjct: 189 LDESVNADAIEIYVHRLRKKLERSSVG---IVTLRGLGYLL 226


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ + + V     G + IE+   +E D I+LD+ L    G E
Sbjct: 5   KILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR++ 
Sbjct: 65  VCREVR-KKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  G L +  DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR NA  E 
Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYLR-NADQEN 235


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           ++L+++DD  +   +   L  E F+V      EDG  L +       D I+LDL +    
Sbjct: 10  KVLVVDDDARIRDLLHRYLTQEGFDVMA---AEDGKALNRLLLRETVDIIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGDLSV--------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD  V        +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPAQEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVF 237


>gi|33594059|ref|NP_881703.1| putative two-component system response regulator [Bordetella
           pertussis Tohama I]
 gi|33564133|emb|CAE43405.1| putative two-component system response regulator [Bordetella
           pertussis Tohama I]
 gi|332383476|gb|AEE68323.1| putative two-component system response regulator [Bordetella
           pertussis CS]
          Length = 236

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            R+L++EDD  +A ++   L+   F       G   + L   + FDA++LD+GL  + G 
Sbjct: 10  FRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHPFDAMVLDVGLPGMDGH 69

Query: 61  EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL ALRV +  + PV +L+    ++DK+ G   GADDY++KPF   E+ AR+ A+++RS
Sbjct: 70  AVLHALRVERRAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRS 129

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG    SL   G L  +   + V V G  +HLT K   ++E+L       +++E   N L
Sbjct: 130 RGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLENAL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G D P    +   +  LR+ L++A  G + IETV G G+ L
Sbjct: 190 W-GDDPPSSDALRSQVHLLRRALADA--GFDGIETVHGTGWRL 229


>gi|27378242|ref|NP_769771.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351389|dbj|BAC48396.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 247

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     ++ D    GE+G+ + +  ++D +++D  L   
Sbjct: 22  MRLLIIEDDR---ESADYLVKAFREVGHIADHAPDGEEGLAMAENGDYDVLVVDRMLPKR 78

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++ ALR    + PV ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + R
Sbjct: 79  DGLSLIGALRDKGNTAPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSR 138

Query: 118 RSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A+ +L   GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 139 RRGGPAEDTLYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLE 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  +
Sbjct: 199 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMIRDGIR 247


>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
 gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 4   KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 64  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172
           ++  +I   +  +LS N   L+ +T E  + G  + LT  E+ ++  LLS   N    +E
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F     D         I V I  LR+KL++ +    YI+T+WG GY
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 229


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++A+A  +E+ LKSEN+NV     G+D ++  +  + D  ILD+ L DI GF
Sbjct: 3   INILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  DICQKIR-ENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVT 121

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + Q       ++I+ G L V+ +     +    + LT  E+ ++ +L   +   +  E 
Sbjct: 122 KYNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEK 181

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++  +        I V I  LR K++++A    YI+TVWG GY
Sbjct: 182 LFEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGY 228


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 17/234 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIPG 59
           IL+++D+ ++   +   L    + VY      DG+E L  FY+   D IILD+ +  + G
Sbjct: 8   ILVVDDEASIRRVLSTRLSKIGYQVYT---AADGVEALDVFYDQRPDLIILDVMMPKLDG 64

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V +A+R A    P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R+I+RR 
Sbjct: 65  YGVCQAVRKAS-RVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRM 123

Query: 120 RG------HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   H QS  +I  G ++V+ + + V     RI LT  E+ ++ELL+      +++
Sbjct: 124 ETTKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISR 183

Query: 172 EMFLNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             FL+ ++    E  V  +++D+ I  LR+KL +++G    I TV G GY L+ 
Sbjct: 184 SEFLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTLKP 237


>gi|53719705|ref|YP_108691.1| osmolarity response regulator [Burkholderia pseudomallei K96243]
 gi|53723644|ref|YP_103129.1| osmolarity response regulator [Burkholderia mallei ATCC 23344]
 gi|76812107|ref|YP_333899.1| osmolarity response regulator [Burkholderia pseudomallei 1710b]
 gi|83719808|ref|YP_442618.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|167563113|ref|ZP_02356029.1| osmolarity response regulator [Burkholderia oklahomensis EO147]
 gi|167570297|ref|ZP_02363171.1| osmolarity response regulator [Burkholderia oklahomensis C6786]
 gi|167581552|ref|ZP_02374426.1| osmolarity response regulator [Burkholderia thailandensis TXDOH]
 gi|167586924|ref|ZP_02379312.1| osmolarity response regulator [Burkholderia ubonensis Bu]
 gi|167619667|ref|ZP_02388298.1| osmolarity response regulator [Burkholderia thailandensis Bt4]
 gi|167720066|ref|ZP_02403302.1| osmolarity response regulator [Burkholderia pseudomallei DM98]
 gi|167739078|ref|ZP_02411852.1| osmolarity response regulator [Burkholderia pseudomallei 14]
 gi|167816290|ref|ZP_02447970.1| osmolarity response regulator [Burkholderia pseudomallei 91]
 gi|167824672|ref|ZP_02456143.1| osmolarity response regulator [Burkholderia pseudomallei 9]
 gi|167836959|ref|ZP_02463842.1| osmolarity response regulator [Burkholderia thailandensis MSMB43]
 gi|167846202|ref|ZP_02471710.1| osmolarity response regulator [Burkholderia pseudomallei B7210]
 gi|167894783|ref|ZP_02482185.1| osmolarity response regulator [Burkholderia pseudomallei 7894]
 gi|167903182|ref|ZP_02490387.1| osmolarity response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911414|ref|ZP_02498505.1| osmolarity response regulator [Burkholderia pseudomallei 112]
 gi|167919428|ref|ZP_02506519.1| osmolarity response regulator [Burkholderia pseudomallei BCC215]
 gi|189350738|ref|YP_001946366.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|206560374|ref|YP_002231138.1| osmolarity response regulator [Burkholderia cenocepacia J2315]
 gi|221198232|ref|ZP_03571278.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
 gi|254189208|ref|ZP_04895719.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254200083|ref|ZP_04906449.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|257138831|ref|ZP_05587093.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|52210119|emb|CAH36097.1| oxidative stress related two component system, transcriptional
           regulator [Burkholderia pseudomallei K96243]
 gi|52427067|gb|AAU47660.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           23344]
 gi|76581560|gb|ABA51035.1| RisA protein [Burkholderia pseudomallei 1710b]
 gi|83653633|gb|ABC37696.1| DNA-binding response regulator RisA [Burkholderia thailandensis
           E264]
 gi|147749679|gb|EDK56753.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|157936887|gb|EDO92557.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|189334760|dbj|BAG43830.1| two-component system osmolarityresponse regulator [Burkholderia
           multivorans ATCC 17616]
 gi|198036415|emb|CAR52311.1| oxidative stress related two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|221182164|gb|EEE14565.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
          Length = 241

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 18/212 (8%)

Query: 23  ENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNVYV    E+   + K +    FD ++LDL L    G  + R LR +   TP+ +L+
Sbjct: 29  QGFNVYV---AENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLT 85

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
                 D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+
Sbjct: 86  AKGEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGE 145

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KI 189
            S+NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + 
Sbjct: 146 FSLNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRS 203

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +DV I +LRK +    G   +I+TVWG GYV 
Sbjct: 204 LDVQISRLRKLIEPDPGSPRFIQTVWGLGYVF 235


>gi|312796438|ref|YP_004029360.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
 gi|312168213|emb|CBW75216.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
          Length = 241

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 111/209 (53%), Gaps = 12/209 (5%)

Query: 23  ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+   
Sbjct: 29  QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 88

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134
              D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+ ++
Sbjct: 89  EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPSELPGAPSETAEVFEFGEFAL 148

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192
           NL  +T+   G  I LT  E+ ++++ + +    L++E  +  L  GR E EV  + +DV
Sbjct: 149 NLATRTLTKNGQEIPLTTGEFSVLKVFARQPRQPLSREKLM-ELARGR-EYEVFDRSLDV 206

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            I +LRK +    G   +I+TVWG GYV 
Sbjct: 207 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 235


>gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 227

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED+      +   L    F V +V D G  G       ++D IILD+ L    G
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFTVDWVAD-GVTGQHRALTEDYDLIILDVMLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + VL+ LR    ST V +L+    ++DKVRGL+ G DDY+ KPF+  EL+AR+R+I+RR 
Sbjct: 60  WTVLKNLRRTH-STSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRG 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +   +L ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++
Sbjct: 119 QPRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENA 225
           D   + +  ++D  I +LR K+ +     NY    I TV G GYVL E  
Sbjct: 179 DMNFDSDTNVVDAAIRRLRAKVDD-----NYEPRLIHTVRGMGYVLEERG 223


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD ALA  ++     +NF V  T  G++ + L +    D ++LD  +    G 
Sbjct: 4   LRLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGI 63

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR      + P+ +L+     +D++RGL++GADDY++KPF+  ELVAR+ A++RR
Sbjct: 64  EVCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRR 123

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            R   ++  +   D+ ++L +  V+  G  + +   E++++  L        ++E  L++
Sbjct: 124 IRPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDY 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E++ +DV I +LRK L N  G  + I TV   GY L
Sbjct: 184 IWGQDSDIELRTVDVHIRRLRKAL-NRDGLPDLIRTVRSAGYAL 226


>gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 233

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ A+   + + L +E + V     G    E     + D ++LDLGL D  G 
Sbjct: 6   LKILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDKPDIVVLDLGLPDTDGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
            +L+  R   IS P+ ILS  +     VR L+ GADDYI KPF  +EL AR+R  +R R 
Sbjct: 66  TLLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVALRHRL 125

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   Q  L   G L+V+L  + V++ G  I L+ KEY ++ LL       LT    L+ +
Sbjct: 126 QQQGQKPLFQCGGLTVDLVRRIVKLNGEEIKLSPKEYDILSLLVQHAGKVLTHHFILSQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + +++ +LR+K+  +    +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228


>gi|325277133|ref|ZP_08142779.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097710|gb|EGB95910.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221


>gi|241664447|ref|YP_002982807.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|240866474|gb|ACS64135.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 233

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLALTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     ++V + +LRKKL   AG    I TV G GY+L
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218


>gi|6117972|gb|AAF03932.1|AF139908_2 LisR [Listeria monocytogenes]
          Length = 226

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  IEL L+ EN+   V + G  G+EL    E+DAI+LDL L  + G E
Sbjct: 3   RILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNEEWDAILLDLMLPHLNGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++    +        +GADDYI KPF  EEL+AR+R+++RR   
Sbjct: 63  VCRRVRQVK-QTPIIMITARDLLSIVYPDWITGADDYIVKPFAIEELLARLRSLLRRVEN 121

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             QS   T     +L V  + + V+     I LT +EY+++  L    N  LT+E+ LN 
Sbjct: 122 AEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYELLLTLMENVNIVLTREVLLNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    E E  ++DV++  LR K+ +    ++YI+TV G GYV+R
Sbjct: 182 VWGYETEVETNVVDVYVRYLRNKIDH-PDEESYIQTVRGTGYVMR 225


>gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+ +I   L  EN  V     G    ++ K   FD +ILD+ L    G+++
Sbjct: 4   ILLVEDDAILSRNISDALLEENMQVEFAYDGNIAEKMLKKTNFDCVILDVNLPGKNGYKI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R     TPV +L+    +EDK++G   GADDY++KPF   EL+ RI+++++RS   
Sbjct: 64  CKNFRSYNTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLLKRSENL 123

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     +L+V  D+ +N  +K V  QG  + LT +E+Q++  L   K   ++K+  +  
Sbjct: 124 GKNEFENNLLVADDIVINNASKKVTRQGKEVQLTPREFQILLKLVECKGELVSKQDLVKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +     I+V+I  LR KL +   GK  I+T  G GY
Sbjct: 184 IWGNIVDANTNTIEVYINFLRGKL-DKPFGKQSIKTKIGYGY 224


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 12/233 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +D+  +   +E  L  +   V     G + +EL +  E D ++LD+ + ++ GF
Sbjct: 9   LKILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  +R A+   PV +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARI+ ++RR+ 
Sbjct: 69  AVLERIR-AQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRAS 127

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      + ++I  GDLSV+ + +     G RI LTG E+ ++ELL  R    + +
Sbjct: 128 QGQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINR 187

Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              L  ++  + E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 188 LDMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMFQ 240


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L  E + V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 10  RILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 70  ICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 129

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++L++       G L+++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 130 MGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++  + +     ++  I +LR K+         I TVWG GY
Sbjct: 190 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGY 233


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+   +   LK  N+ V   D G D ++  +    D +I+DL L  + G 
Sbjct: 3   MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E  + +R      P+ +L+  SS  DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     L VTG ++++    TV+     + LT  E+++++ L    N  L+++  
Sbjct: 123 RVVDLKKIVPELPVTG-VTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      + +I+D+ I  LR KL +       I+T+ G GY
Sbjct: 182 LEQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S            G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G ++++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|187930279|ref|YP_001900766.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187727169|gb|ACD28334.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 233

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED++ LA  +   L    F   V +   DG+    F    EFDA++LDL L   
Sbjct: 1   MRILLVEDEEELAAWLARALAQSGF---VIERAADGVIAEAFLGSGEFDAVVLDLRLPRK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF VL  +R     TPV IL+   +++++VRGL +GADD+++KPF   EL AR+ A++R
Sbjct: 58  DGFAVLADMRARDDRTPVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG A   +  G L  +   K   + G  + LT +E+  +  L  +    ++K    + 
Sbjct: 118 RSRGRAFPRLRCGPLEFDTGRKAFLLSGEPLSLTPREHAALSALLHKTGQPISKVHLFDK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     ++V + +LRKKL   AG    I TV G GY+L
Sbjct: 178 VFNLDSDSSPDAVEVVVHRLRKKL---AGTGVQIVTVRGLGYLL 218


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWN-EQPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  +   PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                L    I  G+L +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  A+G   YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLG-ASG--EYIKTIYGVGYKL 221


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + + LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR SR
Sbjct: 75  ICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134

Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +Q + V   G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV   + +D
Sbjct: 195 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEED 247


>gi|319938367|ref|ZP_08012762.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
 gi|319806455|gb|EFW03119.1| winged helix family Two component transcriptional regulator
           [Coprobacillus sp. 29_1]
          Length = 221

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 80/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  + + I+  L+  ++N +    G +   L     +D I+LDL L  I G E
Sbjct: 5   RILIVEDDSEINNMIKEFLEGYDYNCHQAFSGSECKLLTHMESYDLILLDLMLPGISGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ L  AK S  V +LS  S IE KV  L+ GA+DYI KPF+  EL+ARI+  +R+   
Sbjct: 65  LIQEL--AKTS-KVIVLSAKSGIESKVNLLELGANDYICKPFDIHELLARIKVQLRQYEP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + LI   D +++LD  T+   G  I LT  E+++IEL         TKE    ++++ 
Sbjct: 122 KQRQLIYK-DWTIDLDLMTLNAAGQSIDLTSLEFKIIELFMRYPQKVFTKENIYEYVWED 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 K I V I  +R KL  + G  +YI+TVWG G+ L
Sbjct: 181 DYVVGDKTIHVHISNIRTKL-KSTGTDHYIQTVWGMGFKL 219


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RIL+ +DDK +   ++  L+ E   +Y+ D   +G E LC F +  ++ +ILDL +  +
Sbjct: 33  IRILIADDDKEIRDLLKRYLERE---LYMVDTAINGEEALCLFNKNNYNLVILDLMMPKV 89

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++R
Sbjct: 90  DGIEVCRKLR-DTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMR 148

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +    ++ +    L+++    TV   G  I+LTGKE ++++  +       T
Sbjct: 149 RFLVLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFT 208

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           K     +++D     +   + V I KLRKK+   +    +I+TVWG GY
Sbjct: 209 KTQLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGY 257


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E+      D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLR-QRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121

Query: 122 HAQ-SLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + S  V  +  V +D +   V V+G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I +LR K+ +       I TV G GY
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGY 222


>gi|17545269|ref|NP_518671.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17427560|emb|CAD14078.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 232

 Score =  118 bits (295), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +   L+   + V     G              +D +ILD+GL  +
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VR
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +L+  G L+ +   +   ++   + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    +E     I+V++ +LRKK+         I TV G GY L
Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   + + G + +   +    D ++LDL L  + G E+
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R AK + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKTIR-AKSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVV 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A  ++  G + +++   TV V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 ADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGY 225


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  + G E
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESLSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK ++     ++ I TV   GY L
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYAL 227


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  +   +   L  E F + +    EDG  L +       D I+LDL +    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMI---AEDGKALNRILLRETVDLIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237


>gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD  LA  +E  L    + V V   G    + L     FD  +LD  L  + G
Sbjct: 1   MRILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R LR   ++ P+ +L+    + D++ GL +GADDY+ KPF+ +EL+AR+RA+ RR 
Sbjct: 61  VTVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL V+  A+ V   G  I L+ +E+ ++ LL+      +T+   L+ ++
Sbjct: 121 GLGGEAPVQIGDLVVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  +    +IDV +  +R K+     G + I T+ G GY L
Sbjct: 181 DGETDLRSNVIDVHLAAIRGKIDKPF-GTDTITTLRGVGYRL 221


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V V   G + ++L +  E D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R  K  TPV +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VLRQIR-TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121

Query: 120 -RGHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             G +  +  +GD     L+++ DA  V   G  I LT +E++++  LS      +T++ 
Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + ++R+K+         + T  G GY L+
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLK 230


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 54  KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 114 ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 172

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 173 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 232

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 233 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGY 277


>gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 205

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 116/203 (57%), Gaps = 8/203 (3%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           G  G+EL    ++D I+LD+ L ++ G EVLR LR    + PV +L+   ++ D+V GL 
Sbjct: 6   GRTGLELALQEKWDLILLDIMLPELSGLEVLRRLRQNNPTVPVILLTARDAVPDRVSGLD 65

Query: 93  SGADDYISKPFNKEELVARIRAIVR----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRI 148
            GA+DY++KPF  EEL+ARIR ++R    +++   +  +   DL +NL ++ V   G  +
Sbjct: 66  QGANDYVTKPFAIEELLARIRNLLRITEQQNQPENEQTLHVDDLDMNLKSREVRRNGQWV 125

Query: 149 HLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK 208
            LT KE+ +++ L   K    T+E  ++ ++      +  I+DV+I  LR+K+     GK
Sbjct: 126 ELTPKEFDLLQYLMEHKGEVRTREDIISDVWGYDFVGDTNIVDVYIRYLRQKIEKGFKGK 185

Query: 209 NYIETVWGRGYVLRENAKDETCE 231
             I T+ G GY+L+ +   E CE
Sbjct: 186 -LIHTIRGIGYLLKGS---EDCE 204


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E +   + + G   ++L +   +D I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R   I TP+ ++S  S   DKV  L+ GADDY++KPF+  ELVAR++AI+RR   
Sbjct: 64  VCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRRTDK 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S   A+      +L +  +   +      ++LT KE++++  L    N TLT+
Sbjct: 124 EDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMTLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E 
Sbjct: 184 ERLLERIWGYDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKFKEK 236


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 13/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L  +I+  L  E    Y+ D  ++G E  ++ E     +   I D  L 
Sbjct: 1   MRVLLVEDEPDLGKAIKRTLNQEK---YIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LR      PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GLSGLELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTV---EVQGHR--IHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +   +L+++   +TV    ++G +  I LT KE+Q++E L    N  +T
Sbjct: 118 QRRSPQLQPEQLTVVNLTLDYGTRTVYHFNLKGEKQIISLTNKEFQLLEYLMRHPNQIVT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   N +++   +    ++   +  LR+KL +     N I TV G GY L
Sbjct: 178 SDRIRNQIWEADADAFSNVVAAQMRLLRRKLESVGCAANLIGTVHGVGYRL 228


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 126/230 (54%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +L   +   LK   F+V     G+  +++    + D ++LD+ L +  G +
Sbjct: 3   KVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K   P+ +L+ +    DKV GL+ GADDY++KPF+  E++AR+ A++RR   
Sbjct: 63  VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   S  H+QS    G L+++ D   V+  G  + LT KEY+++  ++ R+   L+
Sbjct: 123 KTQTEKEQSVKHSQSY---GRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLS 179

Query: 171 KEMFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L+ ++      P+ +++D+ +  LR K+        Y++TV G GY
Sbjct: 180 RETILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGY 229


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 226

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 115/201 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L   ++   +  ++ V     GE G+   +  EFD I+LD+ L  + GF
Sbjct: 1   MKLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R     TPV +L+   +++D+V GL  GADDY+ KPF+ +EL+AR+ A++RR  
Sbjct: 61  ELIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+  G L+++  A+   V   ++ L  +E+ ++ELL   +N   T++  ++H++ 
Sbjct: 121 EQRRPLLKCGPLTLDPVARECCVGETKVPLRRREFDILELLMRYENQVFTRDKIISHVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              +    ++DV +  LR KL
Sbjct: 181 KEYDGTSNVVDVHVKYLRDKL 201


>gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1]
 gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1]
          Length = 221

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ EDD  L  +I  +++ E   V   D G+  +E   F  +D +ILD  + ++ G 
Sbjct: 1   MKILIAEDDNRLRKNIVHIIQKEFHQVDAVDNGQHALEYILFQTYDLVILDWMMPELSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R       + IL+      D + GL +GADDY+ KPF  EEL+ARIRAI+RR  
Sbjct: 61  DVCKEARRNGYEGGILILTAKDDSNDIILGLDAGADDYVVKPFKMEELLARIRAILRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL + LD++T+      I LT  E+ ++E L + K   LT+E     ++ 
Sbjct: 121 KSIHQIIQIDDLKLYLDSRTLYKDNQEILLTKNEFLLLEYLFINKGIVLTREQIYTQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E     +D  +  +RKK+ +    K+ IE + G GY +R
Sbjct: 181 FDHEMTNNNLDALVKLVRKKI-DYNRSKSIIENIRGIGYRVR 221


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E + V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
           V RA+R  ++S  P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R 
Sbjct: 64  VCRAIR--RVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   DLS+++    V+ +G  I LT  E+ ++  L+       ++E  L  ++
Sbjct: 122 DSQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             R   + ++++V + +LR K+         + TV G GY
Sbjct: 182 GYRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGY 221


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   +E+ +    + +ILD+ L    G++
Sbjct: 8   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R  KIS  PV +LS      DKV GL+ GADDY+ KPF  +ELVAR++A++RR  
Sbjct: 68  VCREIR--KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYE 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  IV  +L +N    T++V G  +    KE +++  L+   N   T+E  +  +
Sbjct: 126 HKDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           +      + + +DV I +LR+KL +   G+N+ ++TVWG GY
Sbjct: 186 WGYDFYGDSRTVDVHIKRLREKLDSE--GQNWQLKTVWGVGY 225


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +   + L+L  E + V   + G++ + L    E D  +LD+ + ++ GF  
Sbjct: 87  ILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLAS-AEVDLYLLDVNMPELSGFMA 145

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
              +R  + + P+  L+  S   DKV G  +GADDYI KPF+  EL+ R++AI+RRS RG
Sbjct: 146 GSEIR-KQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSARG 204

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A      +S I  GDL ++L+ ++V  QG  I LT  E++++ELL   K    + E   
Sbjct: 205 TAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENIY 264

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  D      I V I  +RKKL + +    YI+T WGRGY
Sbjct: 265 QSIWE-EDAVGDSAIMVHIKNIRKKLEDDSRNPRYIKTAWGRGY 307


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K + +SI  +LK E +       G + +++ +    D I+LD+ +  + G  
Sbjct: 5   KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  LR  K   PV ILS  +   DKV GL  GADDYI KP+N  EL+AR++A +RR R 
Sbjct: 65  ALMKLR-EKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +            IV G L ++   + + V+G  +HLT  EY+++ELL          E
Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183

Query: 173 MFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +++    +  V+  + V I  +R+K+   A    Y++ VWG GY + +  K
Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEKYGK 238


>gi|116493100|ref|YP_804835.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103250|gb|ABJ68393.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 240

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           MRIL+IED+K+++  + +  K E +NV     G   IE  K    ++D ++LDL L    
Sbjct: 1   MRILMIEDNKSVSDMMGMFFKKERWNVTFVYDGLKAIETFKTDPEQWDIVLLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   LR    S P+ +L+   S  D+V GL+ GAD+YI+KPF+   L+ARI+A+ RR
Sbjct: 61  GMEVAAELRRTSQSIPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALYRR 120

Query: 119 --------SRG--HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
                   ++G  +A+  + T  L ++   + V +    I  LT KE+ +++ L+ +   
Sbjct: 121 VSMSRETMTQGAQNAKFDVRTAHLKISTSTREVYLDEKLISDLTPKEFDLLKTLAQKPMQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++E  L  ++D     + + +D  I KLR+KL   A G   ++TVWG GY   ++  D
Sbjct: 181 VFSREQLLQIVWDYEYYGDERTVDAHIKKLRQKLE--AVGPQVVQTVWGVGYKFDDSKID 238

Query: 228 E 228
           E
Sbjct: 239 E 239


>gi|187479378|ref|YP_787403.1| two-component response regulator [Bordetella avium 197N]
 gi|115423965|emb|CAJ50518.1| two-component response regulator [Bordetella avium 197N]
          Length = 217

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 104/186 (55%), Gaps = 3/186 (1%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           E+DAI++DL L D  G  +LR +R     TPV +L+   +++D+VRGL  GADD+++KPF
Sbjct: 33  EYDAIVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPF 92

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
             EEL AR+ A+VRRSRG     +  G LS + +++   + G  + LT +E+  +  L  
Sbjct: 93  ALEELEARLTALVRRSRGRQHPRLQCGSLSYDGESRAFTLDGSLLFLTPREHAALAALLT 152

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R    + K      ++    E     I+V + +LRKKL   AG    I TV G GY+L  
Sbjct: 153 RSGYPVDKAQLFGKVFTHDSEANPDAIEVVLHRLRKKL---AGSDVRIVTVRGLGYMLES 209

Query: 224 NAKDET 229
            A++ +
Sbjct: 210 VARESS 215


>gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 227

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  +E  LK   F V     G +G+   +  + D ++LDLGL D+ G E
Sbjct: 3   RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TP+ +L+   +++ KV  L  GADDY+ KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIR-ATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G L +    + V  +   + L+ KE+ ++ LL  R      +      ++  
Sbjct: 122 --SEVLAVGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               +  ++DV +  LR KL   AG   Y+ TV G GY +R   ++E
Sbjct: 180 PLGKDSNVLDVHMANLRAKLRE-AGAYGYLRTVRGVGYAVRPGRREE 225


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + ++     E D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWA-EEPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L +    + V V G  I LT +E+ + +L +        ++  L 
Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  A+G  + I+T++G GY L
Sbjct: 180 KVWGFEYTGNTRAVDIMVQRLRKKLG-ASG--DSIKTIYGVGYKL 221


>gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8]
 gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  +E  LK   F V     G +G+   +  + D ++LDLGL D+ G E
Sbjct: 3   RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TP+ +L+   +++ KV  L  GADDY+ KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIR-ATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G L +    + V  +   + L+ KE+ ++ LL  R      +      ++  
Sbjct: 122 --SEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               +  ++DV +  LR KL   AG   Y+ TV G GY +R   ++E
Sbjct: 180 PLGKDSNVLDVHMANLRAKLRE-AGAYGYLRTVRGVGYAVRPGRREE 225


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  LK E ++V + + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVR-AKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       S +   D+ +  DA  ++  G  I LT +E+ +   L+      LT+E  
Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      +V+ +DV + +LR+K+   +    YI T  G GY + E
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGE 232


>gi|315127257|ref|YP_004069260.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas sp. SM9913]
 gi|315015771|gb|ADT69109.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas sp. SM9913]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V + G++          D IILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVDVLERGDEVFPYLSENHVDLIILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKYTLPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             +++  +  GDLS++  ++ V++ G  I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 SVKAIEELQFGDLSIDKTSRIVKLSGVEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              YDG D    + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GREYDGLD----RTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K +  ++   L+ E + V     G++ +E  + + FD IILDL L  + G  
Sbjct: 7   RILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-NVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            A+  +     G L +++    V V+   I LT  E++++  L+       T+    E  
Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           L + ++G +    + ID  +  LR KL +      ++ TV G GY     A   T 
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPAGASTS 237


>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++   +++  K  NF V     GE+G+   +    D ++LD+ L  I GF+
Sbjct: 4   KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+      DK++GL+ GADDY+ KPFN  EL+ R ++++RR  G
Sbjct: 64  VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              S      + +G   + L ++ V  +   I LT KE+ ++++    KN   T++  L+
Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I +LR K+ +      +IETVWG GY  R+
Sbjct: 184 KIWGYDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYRWRK 230


>gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K++   I   LK++ +NVY    GE+ I L + ++ D ++LDL +  + G EV
Sbjct: 6   IVVVDDEKSILKYISQQLKAKGYNVYPGMNGEEAISLVEQHDPDLLLLDLKMPVMNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR      P+ ++S    +E  V  L SGADDY+ KPF++EEL AR++  +RR+   
Sbjct: 66  CKRLREWS-KVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAEER 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                QS+   G L++N   + V +    + LT  EY ++E L       +T +M LN +
Sbjct: 125 PSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLNRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + + V+I +LR+KL     G  +I T  G GY
Sbjct: 185 WGPEYTEENEYLRVYIGRLRRKLDPGPNGPKFIVTEQGVGY 225


>gi|254426228|ref|ZP_05039945.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188651|gb|EDX83616.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD A    + + L      V   +  ++   L    ++D +ILD  L  + G 
Sbjct: 1   MIILIVEDDPAQLRPLCIALSESGHLVDGVENAQEAQWLVSHKDYDLLILDWMLPVLSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R      PV +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ RRS 
Sbjct: 61  SLCQHYRTLGKIAPVMMLTAKDTTADKVVGLDAGADDYLVKPVDIPELLARVRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +N    T+E Q   I L+ +E+ ++E L  R    +T++     L+ 
Sbjct: 121 QWHGDRLSLGDLYLNTSTLTLERQKSCIRLSSREFHLMEYLMRRSGQVITRDNIEQTLWI 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              EPE   +   I +LR++L N  G K++++TV+G GY L+
Sbjct: 181 WGTEPESNAVTALIWRLRQRL-NELGAKSWLKTVYGTGYRLQ 221


>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    G++ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-QKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++ ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGY 226


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +   L+ E F V     GE+ ++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIR-EHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                +     + +D +++   G  + LT  E+ ++E+L        +KE    +    +
Sbjct: 124 PAQRPIIEHQGILVD-ESLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGRK 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + IDV I  LR KL +   G+  I+TV G GY+ 
Sbjct: 183 YTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMF 221


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D   +   I   L+   + V     G +G+ + +    D ++LD+ +  + GF  
Sbjct: 5   ILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLDGFGF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+A R  +   PV +L+      DKV GL+ GADDY++KPF+ +ELVARIRA++RR+   
Sbjct: 65  LQAYR-REHQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRRTAAA 123

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q      +  G+L +N   + V V    I+LT  E+ ++ LL        T+E  L HL
Sbjct: 124 RQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQLLEHL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E   + IDV I  LR+K+        YIETV+G GY  R
Sbjct: 184 QGNSYEGVERTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYRCR 227


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DDK + +SI L L+ E +       G + +E  +  E   I++D+ +  + G   
Sbjct: 5   VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLDGLSA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ ILS  S   DK+ GL  GADDYI+KPFN  EL+AR+R+ +RR    
Sbjct: 65  TLKIRQEK-NIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYTKL 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-KEMFLN 176
            +      L++TG L ++  A TV V G  + LT  EY++++ L +     L+  +++ N
Sbjct: 124 GAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIYEN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +D    PE   + V I +LR+K+        YI+ VWG GY++ +
Sbjct: 184 VWHDTPFAPE-NTVAVHIRRLREKIEINPKEPKYIKVVWGSGYLVEK 229


>gi|291525415|emb|CBK91002.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528479|emb|CBK94065.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 217

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K ++  I L L    ++      G +  ++ +   FD IILD+ L  + GF
Sbjct: 2   IEILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVMLPKLNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  ++   +  PV  L+  ++++D++RGL SGA+DY+ KPF   EL+AR+  ++RR  
Sbjct: 62  ELMEYIK--PLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q L    D++++   + V   G  I LT KE++++ELL   KN TL +E     ++ 
Sbjct: 120 KMEQQLTFK-DIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +D+ I +LRKKL       + ++TV+  GY L E
Sbjct: 179 SEYSVESRTLDLHIQRLRKKLDIG----DSLKTVFKAGYRLEE 217


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 82  CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 140

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A          Q ++  GDL V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 141 NAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 200

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 201 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 241

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   +   L+  +F V       +  +      +  ++LDL L    G EV
Sbjct: 9   LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR ++ + P+ +L+ MS   D++ GL+SGADDY++KPFN  EL+ARIRA++RR+   
Sbjct: 69  ARWLR-SQDNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVDV 127

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + +   G     +  + +   G  + LTG EY ++  L  R N  LT++M 
Sbjct: 128 EDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDML 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  L   +  P  + IDV I +LR+KL +       I+TV G GYVL
Sbjct: 188 LELLRGRQAGPFDRAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVL 234


>gi|85059060|ref|YP_454762.1| DNA-binding transcriptional regulator PhoP [Sodalis glossinidius
           str. 'morsitans']
 gi|84779580|dbj|BAE74357.1| two-component response regulator protein [Sodalis glossinidius str.
           'morsitans']
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L H + + ++     V       +       +  D  I+DLGL D  G 
Sbjct: 1   MRVLVIEDNSLLRHHLMVQMREMGHQVDAAADAREADYFLNEHPPDIAIVDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R  ++  P+ +L+     +DKV  L++GADDY++KPF+ EE+VAR++A++RR+ 
Sbjct: 61  NLIRRWRSHQVKIPLLVLTAREGWQDKVTVLEAGADDYVTKPFHLEEVVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I      ++L  + + +    I LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQVIELPPFLIDLSRRELMINEVNIRLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E   IDV + +LRKK+  A      I TV G+GY
Sbjct: 181 DAELRESHTIDVLMGRLRKKMQ-ANYPYEVITTVRGQGY 218


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD  ++  +   L++  F+V+ +   E  +++      D +I+D  L  + G  + +
Sbjct: 1   MVEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTK 60

Query: 65  ALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            LR      KI  P+ +L+  S   D ++G  SG DDYI+KPF+  EL+AR+ A++RRS 
Sbjct: 61  TLRNRADTQKI--PIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRST 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A SLI +  +S+N    T+++ G  ++L  + Y +++ L    N  L++   L+  + 
Sbjct: 119 DGAGSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E + +DV+I +LRKKL   +G    I+T+ G GYV
Sbjct: 179 RSVYVEERTVDVYIVRLRKKLE-PSGKSAVIKTIHGVGYV 217


>gi|241766536|ref|ZP_04764398.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363231|gb|EER58800.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 229

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +  +++  L      +     G   +        DA++LDL L  + G 
Sbjct: 5   MQLLLVEDDPTMQVTLQRALARRGMEITAVGDGPAALNQWVARPPDAVVLDLTLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+RA++RRS 
Sbjct: 65  QVLQQARARGLRTPVLILTARGTVGDRVLGLNAGADDYLPKPFDLDELEARLRALLRRSS 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+  +  G +  + D+  +   G  + LT +E  ++  L ++    +TKE     
Sbjct: 125 DATPSAEHSVQIGAIRYDKDSGALYRNGEVMELTPRELALMHALLVQPGHAVTKERLYEL 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ G+ + + + I+V + +LRKKL   AG    + T+ G GY+LR +
Sbjct: 185 VFPGQLDVQYEAIEVVVYRLRKKL---AGTGLTLMTLRGLGYLLRAD 228


>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 225

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G +   L      D ++LDLGL D+ G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATGAEA--LADVRGVDLVVLDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +   D+ +++ A    V    + LT KE+ ++ +L     + + ++  +  ++  
Sbjct: 122 PVEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 K +D+ +  LR+KL + A   +YI TV G G+   ENA+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225


>gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
 gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
          Length = 228

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LAPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID+ +  LRKKL +   GK  I+T+ GRGY++
Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPDRPDGKARIKTLRGRGYLM 224


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD+A+A  I      E F+V  T  GE  + L +    D ++LD  +  +PG EV
Sbjct: 6   LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEV 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    S   P+ +L+     ED++RGL++GADDY++KPF+  ELVAR+ A++RR R
Sbjct: 66  CRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLR 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++   D+ ++  A  V   G  + +   E++++           ++   L+ ++
Sbjct: 126 PALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E++ +DV I +LRK + N  G  + I TV   GY L
Sbjct: 186 GQDSDIELRTVDVHIRRLRKAI-NLPGTSDIIRTVRSAGYAL 226


>gi|78064733|ref|YP_367502.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|107024522|ref|YP_622849.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115350122|ref|YP_771961.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116688099|ref|YP_833722.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134294208|ref|YP_001117943.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|161523255|ref|YP_001578267.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|167587959|ref|ZP_02380347.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
 gi|170699024|ref|ZP_02890081.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170731448|ref|YP_001763395.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171315856|ref|ZP_02905087.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172059140|ref|YP_001806792.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|189351972|ref|YP_001947600.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|206558411|ref|YP_002229171.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|221202212|ref|ZP_03575247.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221208727|ref|ZP_03581726.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221214321|ref|ZP_03587293.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|254246669|ref|ZP_04939990.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|254251001|ref|ZP_04944319.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|77965478|gb|ABB06858.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
 gi|105894711|gb|ABF77876.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115280110|gb|ABI85627.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116646188|gb|ABK06829.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124871445|gb|EAY63161.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124893610|gb|EAY67490.1| Signal transduction histidine kinase [Burkholderia dolosa AUO158]
 gi|134137365|gb|ABO53108.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|160340684|gb|ABX13770.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|169814690|gb|ACA89273.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170136060|gb|EDT04331.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171099045|gb|EDT43830.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171991657|gb|ACB62576.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|189335994|dbj|BAG45064.1| signal transduction response regulator [Burkholderia multivorans
           ATCC 17616]
 gi|198034448|emb|CAR50313.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|221165976|gb|EED98450.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221171359|gb|EEE03807.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221178006|gb|EEE10418.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|325523588|gb|EGD01882.1| two-component regulatory system, response regulator protein
           [Burkholderia sp. TJI49]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LLIEDD+ +A  I+  L+   F V   D+  DGI   +       + +ILDLGL  I
Sbjct: 1   MRLLLIEDDRPIARGIQSSLEQAGFTV---DMVHDGIFAEQALAQNRHELVILDLGLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L   R     TPV +L+    + D+++GL SGADDY+ KPF   EL ARIRA++R
Sbjct: 58  DGMTLLTRFRQTNRHTPVIVLTARDELNDRIQGLNSGADDYMLKPFEPAELEARIRAVMR 117

Query: 118 RSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RS  H+   +  +  G + ++   + +      + L+ +E+ ++E+L LR    ++K   
Sbjct: 118 RSGPHSDMPRPEVSLGGVRLSGVDRRIFNDDKPLELSPREFAVLEMLLLRHGRVVSKAQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +HL     +     I+V++ ++RKKL      +  I TV G GY+L+E
Sbjct: 178 QDHLTHFGGDLGDTAIEVYVHRVRKKLEQC---RVEIVTVRGFGYLLQE 223


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA ++   L+ E + V V   G  G+E  +    D I+LD+ L  + GF V
Sbjct: 4   ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR  +   P+ +L+      D++ GL+ GADDYISKPF+  E +ARIRAI+RRS   
Sbjct: 64  CRILR-QESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQ 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   + ++  G L V+  ++        + L  KE+ ++  L   +   L++++ L  +
Sbjct: 123 PRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV I  LR+K+        YI+TV G GY
Sbjct: 183 WGPDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGY 223


>gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   ++  +  EN N  V   G+DGI L    ++  I+LD+ +  + GFE
Sbjct: 3   KILIIDDDKELCELLQRSVLVENINADVCHSGKDGIFLLSTKQYQLIVLDIMMPGLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  +R  K + P+ +L+  S    KVRGL++GADDY++KPF+ +E VAR+ +++RRS  
Sbjct: 63  TMERIR-EKSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQ 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +        L+  G L +NLD  +V  +     L  KE++++  L+  +   LTK+   
Sbjct: 122 FSVIDDTFGQLVYKG-LEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++     +   I V I KLRKK+   +   + I+TV G GY
Sbjct: 181 EAVWNEEYCFDDANIMVMISKLRKKIEPDSDKPSIIQTVKGMGY 224


>gi|260682198|ref|YP_003213483.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CD196]
 gi|260685797|ref|YP_003216930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile R20291]
 gi|260208361|emb|CBA60855.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CD196]
 gi|260211813|emb|CBE02200.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile R20291]
          Length = 220

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 19/224 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++L+ED+          LK++   V +   G+ GIEL K  E D IILD+ +  + GFEV
Sbjct: 4   VMLLEDE----------LKAKGHEVLIAYDGQAGIELSK-QEPDLIILDIMMPKMNGFEV 52

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +A+R   +  P+  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR +  
Sbjct: 53  CQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKRS 111

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +S +  G L + +  + +++ G  I LT  EY ++ELL+L      ++E   
Sbjct: 112 QYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQIY 171

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++    E +   +   + K+R K S     K YI TVWG GY
Sbjct: 172 EKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGY 215


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ 
Sbjct: 63  SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++      + +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 122 GESEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 220


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 75  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      +S+   GD+ +N+  + V +    + LT +E++++ELL+  +   L      
Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+TVWG GY
Sbjct: 193 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 236


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRR--- 120

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           H+Q           S +  G L ++ DA     +G  I LT +E++++  L+      +T
Sbjct: 121 HSQVSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 181 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLR 232


>gi|146283048|ref|YP_001173201.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145571253|gb|ABP80359.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
          Length = 225

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           L +   FD +ILDLGL D  G 
Sbjct: 1   MHVLLAEDDALIASGIVAGLNAQGLIVDHAATAAAAEALLRAAHFDVLILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR   +  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  ALLRRLRQQGLELPVLVLTARDAVSDRVTGLQAGADDYLLKPFDLRELAARLHTLMRRMS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G LS +       + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLSYDPSRCEARLDGRLVDLSRREQALLQALLNNQGRVLSSEQLKDAVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ E   ++V I  LR+KL     G   +ETV G GY L
Sbjct: 181 FADDVESNALNVHIHHLRRKL-----GSGIVETVRGLGYRL 216


>gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021]
 gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  + +V  QG  I L  +E++++E L       +T+ M L +++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+         + T+ G GY+++++
Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDD 228


>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
 gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
          Length = 242

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRVR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|148254885|ref|YP_001239470.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
 gi|146407058|gb|ABQ35564.1| putative two-component response regulator [Bradyrhizobium sp.
           BTAi1]
          Length = 224

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L+  +   L    + V       D  +      + A+ILDLGL D  G 
Sbjct: 1   MRLLIVEDNVELSKLLSQGLGRAGYEVDAVSSAADARDALSGIRYAAMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR      PV +L+    ++D+V GL+SGADDY+ KPF  EELVAR+ AI+RR  
Sbjct: 61  AVLTALRRGSDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLEAILRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+L  + +++   V G     + +E  ++E+L  R+   + K+   +H++ 
Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVAGTPRTFSARELSVLEILLRRQGRVVPKKAVEDHIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V++ +LRK+LS   G    I T+ G GY++
Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLSE-YGATVVIHTIRGVGYMM 220


>gi|332525381|ref|ZP_08401542.1| two-component system response regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332108651|gb|EGJ09875.1| two-component system response regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 229

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  ++   L+     V +   G+      +   +DA++LDLGL    G 
Sbjct: 5   MRLLIVEDDPDLGDALRAGLRQAGHAVDLFPDGQQADAALRGAPYDAVVLDLGLPGTDGV 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   + +PV IL+    IE ++ GL SGADDY+ KP    EL AR+RA+ RRS 
Sbjct: 65  TWLRRWRERGLDSPVLILTARDGIEQRIEGLDSGADDYLVKPIAIAELAARLRAMARRSA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +QS+   G L  +  +K V  +G  + L G+E  ++E+L +     L+K      LYD
Sbjct: 125 GRSQSVWTHGALRYDPASKQVHWRGQPVELRGRELALLEVLLMNPQRVLSKVQLQEKLYD 184

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            G  EPE   ++V I  LR+K++        + TV G GY L     DE 
Sbjct: 185 WGGAEPESNALEVHIHHLRRKIA-----PGIVRTVRGVGYALGAADGDEA 229


>gi|331013564|gb|EGH93620.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 164

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 1/162 (0%)

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS G
Sbjct: 1   MIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 60

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY  
Sbjct: 61  FIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPD 120

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 121 DDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 161


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +   L    FNV   D GE+ ++L      DA++LDL L    G EV
Sbjct: 6   ILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGKDGNEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RA+R  +     P+ +L+  S  +D V GL+ GADDY++KPF+   L+AR+ A +RR+ 
Sbjct: 66  CRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRRTP 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I    + ++     V V G  IHLT  E+ ++ LL+ R     +++  
Sbjct: 126 EPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQQI 185

Query: 175 LNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ +  YD    P  + +DV I  LRKKL +A      IETV G GY +RE
Sbjct: 186 IDQVRGYDYSITP--RAVDVQIFGLRKKLGSAG---TCIETVRGIGYRIRE 231


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I   +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 6   KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    S P+ +L+  +    KVRGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 66  TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  H+Q L   G L+++LD+++V  Q     L  KE+ ++   +  +   LTK+   
Sbjct: 125 FNTTGDHSQPLTYQG-LTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKK+   +G   YI+TV G GY
Sbjct: 184 EEVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGY 227


>gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27]
 gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +   +   L+ E F V     G + ++       D ++LD GL D+ G E
Sbjct: 3   RVLLVEDDSQVGELVRRFLEREGFAVAWVRFGREALKRVGKEGADVVVLDRGLPDMEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR      PV +L+G +  E +V GL  GADDY+ KPF+  EL+ARI+A++RR+  
Sbjct: 63  VLKGLRSLDPLLPVLLLTGRADEESRVEGLLEGADDYLGKPFSLRELLARIKALLRRAGK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +     G L V+L+ +   ++G  + L+  E  ++ + +       T+   L  ++  
Sbjct: 123 EGRRRF--GPLEVDLEGRRAYLEGEPLRLSPTEMNLLLVFAQAPGRVFTRGELLERVWGP 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E   +++D ++  LRKKL +      +IETV G GY
Sbjct: 181 EFEGSERVVDAYVRLLRKKLRDDPEAPRFIETVVGLGY 218


>gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
 gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE + +  +    +LD+ L D+ G 
Sbjct: 4   KILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDMSGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  EDK+ G  SGADDYI KPF+ +EL+ R+ A++RR +
Sbjct: 64  EVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRVK 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    ++LD + +   G  I LT  E+ +++ L +    +L+++  L 
Sbjct: 124 KEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQILT 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 184 EVWGNNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 230


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   + L L+ + + V   + GE  +E+      D ++LDL L  I G E
Sbjct: 5   KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V RA+R       TP+ +LS      D + GL+ GADDYI+KPF+ + L+ARIR+++RR 
Sbjct: 65  VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124

Query: 120 RGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  A      +++ V+G ++++    TVEV G +I LT  E+ ++  L+ R     T+  
Sbjct: 125 QAKAAPPDPGRTIAVSG-ITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ +         + +DV I  LRKKL +      YIETV G GY  RE
Sbjct: 184 IVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230


>gi|33595492|ref|NP_883135.1| putative two-component system response regulator [Bordetella
           parapertussis 12822]
 gi|33599877|ref|NP_887437.1| putative two-component system response regulator [Bordetella
           bronchiseptica RB50]
 gi|33565570|emb|CAE40212.1| putative two-component system response regulator [Bordetella
           parapertussis]
 gi|33567474|emb|CAE31387.1| putative two-component system response regulator [Bordetella
           bronchiseptica RB50]
          Length = 236

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            R+L++EDD  +A ++   L+   F       G   + L   + FDA++LD+GL  + G 
Sbjct: 10  FRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHAFDAMVLDVGLPGMDGH 69

Query: 61  EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL ALRV +  + PV +L+    ++DK+ G   GADDY++KPF   E+ AR+ A+++RS
Sbjct: 70  AVLHALRVERRAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRS 129

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG    SL   G L  +   + V V G  +HLT K   ++E+L       +++E   N L
Sbjct: 130 RGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLENAL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G D P    +   +  LR+ L++A  G + IETV G G+ L
Sbjct: 190 W-GDDPPSSDALRSQVHLLRRALADA--GFDGIETVHGTGWRL 229


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L H ++  L  EN    +   G++GI   K  E+  +ILD+ +  + GF+
Sbjct: 4   KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  +R      PV +L+  S    KV GL+SGADDY++KPF+ +E +AR+ +++RR   
Sbjct: 64  VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S       +   +L+++L++++V  +   + L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 182

Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    EP V     I   I KLRKK+ +      YI+TV G GY
Sbjct: 183 KVW---QEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGY 225


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  +      ++  +ILD+ L  + G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K STP+ +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   GH I LT KEY+++  L+   +   ++E 
Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  +A     I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKL 234


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGY 228


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +   ++L L S N+ +   + G+D  +  +  + D  ILDL L  + G++
Sbjct: 3   RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +L+ +R +K S    PV ILS      DK+ GL  GADDY++KPF+  EL ARIR+++RR
Sbjct: 63  ILKFIR-SKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+   + + + G L ++LD + V ++   + LT KE+++++ L+  +   +++E  +N +
Sbjct: 122 SKKDERLIQIHG-LCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  LRKKL N     ++I++V   GY L
Sbjct: 181 WGYDFIGESRTLDVHINSLRKKLGNEYA--HWIQSVRQVGYRL 221


>gi|315660023|ref|ZP_07912881.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
 gi|315494924|gb|EFU83261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590]
          Length = 223

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 129/223 (57%), Gaps = 11/223 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+IEDD  +AH + L L   +    +   G++ IE  +  +FD I+LDL L ++ G EVL
Sbjct: 6   LIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSGEEVL 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             ++ A  ++ V ++S  + +E+KVR L SGADDY++KPF+ +EL ARI   +R  +   
Sbjct: 66  SYIK-AHANSRVIVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLRNLQQMP 124

Query: 124 QS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF---LNHL 178
           +   ++   DL+++   + V+V+   +++T  EY ++ L  L     ++K+     +  +
Sbjct: 125 RQGDILTWRDLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQKIYENIQGI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y G D      ++V I  +RKKL+ A   ++YI+TVWG G++L
Sbjct: 185 YLGDDNT----VNVHISNIRKKLA-AFSDESYIKTVWGIGFML 222


>gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 236

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +  S+EL L  E F V       +G+ L      D +ILD+ L    G+ 
Sbjct: 15  RLLLVEDDPGIRESLELGLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILLPGSDGYR 74

Query: 62  VLRALRVA---KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           VL A+R     K    V  L+ + +IED+VRGL+ GADDY+ KPF+  ELVARI A+ RR
Sbjct: 75  VLEAIRTPHNPKREVAVLFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWRR 134

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +L    D+ +  D +     G  + L  KE+ ++++L   +   +++E  +  L
Sbjct: 135 LQRPVTAL-CAADVRLYPDKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRL 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  R +P    ++V +  LR+ L    G    I TV G GY+L E
Sbjct: 194 WGERVDP--NTLEVHVSSLRRAL----GDPPMIRTVRGYGYLLDE 232


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++ +   + + L+   F V   + G   +E+    ++  I+LDL L ++ G 
Sbjct: 4   VKILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGR 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EV   LR  K  TPV +L+      +++ G + GADDY+ KPF+  ELV R++A+++R  
Sbjct: 64  EVCAQLRKQK-DTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVH 122

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +G A+     +     L++NL+++ V   G  + LT KEY+++  L+ R     T+E  L
Sbjct: 123 QGPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             +++ +   + + +D  I +LR+KL  A+      I TVWG GY
Sbjct: 183 RDVWNYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGY 227


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|297561828|ref|YP_003680802.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846276|gb|ADH68296.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 217

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++ + L+ E   V V   G+  +E     ++D ++LD  L    G 
Sbjct: 1   MRVLVVEDERVLADTVAVGLRREAMAVDVVYDGDAALEYTAVNDYDVVVLDRDLPGTHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RAL     +  + +L+    ++DKV GL  GADDY++KPF   EL+AR+ A+ RRS 
Sbjct: 61  DVARALVRESYNGRILMLTASDGVQDKVEGLTIGADDYLAKPFAFAELIARVHALGRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++     V   G  + LT KE+ ++++L   + T ++ E  L   +D
Sbjct: 121 PPLPPVLERHGITLDPANHRVHRDGREVTLTPKEFAVLQVLMRAQGTVVSAEGLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL    G    I+TV G GY L
Sbjct: 181 ENADPFTNVVRVTVMTLRKKL----GDPPVIQTVPGAGYRL 217


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ ED++ +A  + + L+ E ++V     G++ + + +    D IILD+ +  + G+
Sbjct: 4   ISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A+ + P+  LS  +S  DKV GL  G DDYI+KPF   ELVAR+ A +RRS 
Sbjct: 64  EVTRQVR-AQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRRSM 122

Query: 121 --GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              H Q     S++  G++ ++ D +TV + G  I LT KE+ ++ LL+       + E 
Sbjct: 123 KLNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYSVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++         + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWNDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD AL+  I ++L SE+F  VY  D G    E+ +  + D I+LDL L  + G 
Sbjct: 4   RILVVDDDAALSEMIGIILASEDFEPVYCYD-GSSAREVFRASDPDLILLDLMLPGMDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +V + +R A+   PV +L+  S   D VRGL++GADDY+ KPF   ELVAR++A +R   
Sbjct: 63  QVCQQIR-AESDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMD 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  Q  I  GD+ +++   TV   G  I LT  E+ ++  L+   +   +++  L  ++
Sbjct: 122 RGVTQE-ITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + ++++V + +LR K+         + TV G GY
Sbjct: 181 GYPHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGY 220


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score =  118 bits (295), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR   
Sbjct: 63  ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GITYIKTVKGIGY 217


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  ML+ E F   V   G D +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +ALR ++ + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKALR-SRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + G  +S   ++  G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 ATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+ +      ++ TV G GY
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGY 225


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++A  I++ LK   + +     G + ++  +   FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R A+   P+ IL+     ED V G + GADDYI+KPF   EL+AR+ +I+RR  G
Sbjct: 80  ACERIR-AQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  G+L ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+         I TV G GY L E
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKLAE 244


>gi|255524527|ref|ZP_05391482.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186025|ref|ZP_06854430.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255511823|gb|EET88108.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049293|gb|EFG88722.1| subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 220

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DDK +   I+  L+  N  V      ED   + KF E+D I+LD+ +  I GF+
Sbjct: 3   KILAVDDDKRILKLIKNALEINNHEVVTLQNAED-TPIEKFCEYDLILLDVMMPGIDGFK 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           +   +R + + +P+  L+  +     V+GL  G DDYISKPF   EL AR+ A +RR +R
Sbjct: 62  LCEKIRNS-VDSPIIFLTAKTEESAIVKGLALGGDDYISKPFGVMELNARVEAYLRRQNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   ++  +++++ D K + + G+ ++ T  EY + E L+L +    TK+     +YD
Sbjct: 121 GKSTRKLIYENITIDFDKKEISIGGNAVNFTKNEYNICEYLALNRGKVFTKQAIFESIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I  +I  +R K          IETVWG GY+ +
Sbjct: 181 LDSDTQFSVITEYIRLIRNKFKKFDCSP--IETVWGVGYMWK 220


>gi|297563700|ref|YP_003682674.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848148|gb|ADH70168.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 218

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ ALA ++   L+ E   V V   G+ G+E+   + +D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEPALAETVAEGLRGEGMAVDVCHDGDTGLEMACVHGYDVIVLDRDLPVLHGD 60

Query: 61  EVL-RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V  R +    +   V +L+    ++D+V GL  GADDY++KPF   EL+AR+RA+ RRS
Sbjct: 61  QVCARVVEAPGVEARVLMLTAAGGLDDRVEGLDLGADDYLAKPFAYAELLARVRALGRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  A+  +    L V+ + +T   +G  + L+ KE  ++E L       ++    +  ++
Sbjct: 121 RPGARPRLSRAGLVVDTNRRTAFREGRELSLSPKELGVLEELLRADGAPVSTTHLVEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 DAHLDPFSGVLKVVVHGLRRKL----GDPPVIRTVPGHGY 216


>gi|254391808|ref|ZP_05007003.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|326443845|ref|ZP_08218579.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705490|gb|EDY51302.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
          Length = 233

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ +             F  I+LDLGL
Sbjct: 1   MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 60

Query: 55  TDIPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
            D  G++V   LR  KI STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI 
Sbjct: 61  PDQDGYQVCGKLR--KITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIH 118

Query: 114 AIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           A+ RR      +   A   +  G +++ L  + V V G  + LT KE+ ++ LL+ R   
Sbjct: 119 AVSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGV 178

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E  ++ ++    E   + ++V +  LR KL   A     +ETV G GY L
Sbjct: 179 VFRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LVETVRGVGYRL 228


>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
 gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
          Length = 238

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 11  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 71  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129

Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172
           ++  +I   +  +LS N   L+ +T E  + G  + LT  E+ ++  LLS   N    +E
Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F     D         I V I  LR+KL++ +    YI+T+WG GY
Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 236


>gi|148273939|ref|YP_001223500.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831869|emb|CAN02839.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 234

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +DD+ +  ++ + L S  +++   + G   +      + D  ++DLG+  + G 
Sbjct: 1   MKILIADDDQQILRALRITLTSLGYDIVTAEDGAAAVRAAVAEKPDLYMIDLGMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ALR+   + P+ ++SG S   DKV  L +GADDY++KPF+ +EL+ARIRA+ RR+ 
Sbjct: 61  EVIQALRLWS-TAPILVVSGRSGAADKVEALDAGADDYVTKPFSIDELLARIRALGRRAA 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   D++V+L A+ V     R+ LT  E+Q++ELL    +  ++++  L  +
Sbjct: 120 ADEDRSATVSFADVTVDLAARVVTRGDQRVRLTPTEWQVLELLVRNPDRLVSRQTLLTEI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   + +++ +LRKKL        ++ T  G GY
Sbjct: 180 WGPTHLNDSGYLRLYVAQLRKKLEPDPTHPRHLLTDPGMGY 220


>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
 gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +A  + L +   + +V V + G  G+E      +D +ILDL L    G E
Sbjct: 4   QVLVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLPGADGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + R LR     TP+ +L+  S+  D+V GL+ GADDY++KPF+  EL AR++AI R    
Sbjct: 64  ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    L +++D + V V+G  I LT KE+Q++   +       ++   L
Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++          +   I +LR K+        YI+TVWG GY
Sbjct: 184 DQVWGYSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGY 227


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E+      D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 71  VCQELR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I  GDL ++ + + V  +G RI LTG E+ ++EL+  R     ++   L
Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLFQ 238


>gi|251778829|ref|ZP_04821749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083144|gb|EES49034.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 231

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQGINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKNEVKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRL 229


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  + L    ++  I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKL 234


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89]
 gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88]
 gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli S88]
 gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489]
          Length = 223

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 216


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPAFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I   +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 4   KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    S P+ +L+  +    KVRGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 64  TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  H+Q L   G L+++LD+++V  Q     L  KE+ ++   +  +   LTK+   
Sbjct: 123 FNTTGDHSQPLTYQG-LTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKK+   +G   YI+TV G GY
Sbjct: 182 EEVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGY 225


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +    K E+F+V  T  GE+ + + +    D ++LD  +  + G E
Sbjct: 5   KMLLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGIE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK ++     ++ I TV   GY L
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYAL 227


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 82  WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPAFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241


>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++  +   G DG+       FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +  TPV  L+    I D+++GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLR-KETDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   DL +++  + V   G RI LT KE+ ++ L +  ++  L++ +  + ++D
Sbjct: 120 IREEEQLHIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV + +LR K+ +    K  I +V G GY
Sbjct: 180 MNFDSDTNVVDVAVRRLRLKVDDPFQLK-LIHSVRGIGY 217


>gi|289756681|ref|ZP_06516059.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional
           regulatory protein TCRA [Mycobacterium tuberculosis T85]
 gi|289712245|gb|EFD76257.1| LOW QUALITY PROTEIN: two component DNA binding transcriptional
           regulatory protein TCRA [Mycobacterium tuberculosis T85]
          Length = 211

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 1/182 (0%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           ++DA++LD+ L  I GFEV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPF
Sbjct: 24  DYDAVVLDVMLPGIDGFEVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPF 83

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           N +EL AR+RA+ RR        +  GDL ++     V      I L+ KE+ ++E L  
Sbjct: 84  NLDELFARLRALSRRGPIPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIR 143

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R     T+   L   +D   E    I+DV+I  LR K+    G  + +ET+ G GY LR+
Sbjct: 144 RPGIVHTRAQLLERCWDAAYEARSNIVDVYIRYLRDKIDRPFGVTS-LETIRGAGYRLRK 202

Query: 224 NA 225
           + 
Sbjct: 203 DG 204


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+I++++DDK +   + + LK+E +       G++ + ++    +   +ILD+ +  I G
Sbjct: 1   MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPGITG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ ++S  +   DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKELR-KDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    S    ++  G L +N D+  V+ + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +   L    F+V   D GE  + L     F+A+ILDL L  I G EV
Sbjct: 5   ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNLPGIDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R ++ A+ + P+ +L+      D++ GL+ GADDY+ KPF   EL+AR+RA++RR +  
Sbjct: 65  CRHVK-AQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQTS 123

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            HA S  +  G L ++  A    V G    LT  ++Q++ +L+      L+++  ++ L 
Sbjct: 124 PHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDALR 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV + ++R ++ +       I TV G GYV 
Sbjct: 184 GEALEAFDRSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E ++V V + GE  ++L    + D I+LDL L +  G E
Sbjct: 5   KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVRAQK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       S +V  D+ +  +A  ++  G  + LT +E+ +   L+  +   LT+E  
Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      +V+ +DV + +LR+K+   +    YI T  G GY + E
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGE 232


>gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
 gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     Q+L V  DL +++  +     G  + LT KEY ++ELL  +    L++    
Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 126/235 (53%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+    + D ++LD+ +  + G+ 
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 68  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A        +I  GD+ ++ + + V  +  RI LTG E+ ++ELL  R     ++   L
Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +   + E
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRIVQGE 241


>gi|15894784|ref|NP_348133.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024453|gb|AAK79473.1|AE007661_3 Response regulator (CheY-like receiver domain and a HTH)
           [Clostridium acetobutylicum ATCC 824]
 gi|3025460|gb|AAC12853.1| PhoP [Clostridium acetobutylicum ATCC 824]
          Length = 217

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD A+++ I+L L    +       GE  ++L +   FD I+LD+ L  I GF
Sbjct: 2   INILIIEDDAAISNLIKLNLNMAGYISEAVYNGEAALDLIEGRNFDLILLDIMLPKIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + ++   I  PV  L+  +S+ DKV GL+ GADDYI+KPF+  EL+ARI  ++R   
Sbjct: 62  SLFQKIKYKGI--PVIFLTAKTSVTDKVSGLRMGADDYITKPFDGMELLARIDNVLRHYD 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +SL    D+ V L+   ++  G  I LT KE+++   L   KN  LT+E     L+ 
Sbjct: 120 KNEKSLKFE-DIEVQLEEMRLKKNGQIIDLTVKEFELAAYLIKNKNIVLTRERIAEELWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + + ID +I K+RKKL      K+ ++T++  GY L E
Sbjct: 179 YDYLGDCRTIDNYIQKIRKKLD----WKDKVKTIFKMGYRLEE 217


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   + + L+   + V     G++ +      + D I+LD+GL ++ GF
Sbjct: 1   MKILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R  +   P+  L+      D + GL+ GADDY++KPF+  ELVARIR I++RS 
Sbjct: 61  EVCRRIR-QRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  A + +  G+LS++  A   ++ G  I LT +E  ++ LL        ++   ++ ++
Sbjct: 120 KAQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   + +D  +  LR KL   AGG + IETV   G  LR
Sbjct: 180 GAGSQVSDRTLDSHLRNLRAKLEQ-AGGNDLIETVHAVGIRLR 221


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK +   + L    E F V + + G++G+        + +ILD+ L    G++
Sbjct: 6   KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R      P+ +L+  S   DKV GL+ GADDY+ KPF+ +EL+AR++A++RR   
Sbjct: 66  ICREIRRMS-DIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++IV  +L ++ +   V+ Q   + L  KE++++  L+   N   T+E  L  ++
Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +DV + +LR+K+  +      I TVWG GY
Sbjct: 185 GFDYYGDSRTVDVHVNRLREKIG-SENDPWKISTVWGVGY 223


>gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
 gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium
           botulinum BKT015925]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +  +I+  L++ +FNV       + + +    +FD IILD+ + ++ G E
Sbjct: 4   KILVIDDNEDICTTIKSYLENYDFNVKTVTSCRNALNILN-EKFDLIILDIMMPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K+S P+  +S     EDK++    G DDYI+KPF+ +EL ARI + +RR   
Sbjct: 63  FCSIIR-KKVSCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHLRREER 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     ++ +G++ ++  A  +  +G ++ LT KEY M++ L L KN   +KE  L+++
Sbjct: 122 IKSKEVYILSSGNIILDAVAHDILCKGEKLKLTNKEYNMVKFLMLNKNIVFSKEKLLDNV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E  ++ +   I  +RKK+ N     +YI T++G+GY
Sbjct: 182 WGMDSESYLETVTESIKNIRKKIKNIDKDNSYISTIYGQGY 222


>gi|302542071|ref|ZP_07294413.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459689|gb|EFL22782.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 238

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F++     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAAALTAVLSRHGFDITHARSGEEALKALLPGAGAPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV   +R    +TPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGFEVCGRIR-KLTATPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119

Query: 118 R-----SRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           R     S G A         Q  +  G +++ L  + V V G  + LT KE+ ++ LL+ 
Sbjct: 120 RTLPSDSGGGAGTEDSGEGPQPPLRLGPVTIELPTRQVSVDGATVSLTRKEFDLLALLAQ 179

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R      +E  ++ ++    E   + ++V I  LR KL   A     IETV G GY L
Sbjct: 180 RPGVVFRREQIISEVWRTSWEGTGRTLEVHIASLRSKLHMPA----LIETVRGVGYRL 233


>gi|294815494|ref|ZP_06774137.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328093|gb|EFG09736.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 307

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 19/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ +             F  I+LDLGL
Sbjct: 75  MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 134

Query: 55  TDIPGFEVLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
            D  G++V   LR  KI STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI 
Sbjct: 135 PDQDGYQVCGKLR--KITSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIH 192

Query: 114 AIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           A+ RR      +   A   +  G +++ L  + V V G  + LT KE+ ++ LL+ R   
Sbjct: 193 AVSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGV 252

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E  ++ ++    E   + ++V +  LR KL   A     +ETV G GY L
Sbjct: 253 VFRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LVETVRGVGYRL 302


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  LK E ++      GE+ + L      D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + ISTP+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRQS-ISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q        +   GDL++++D   ++     I LT +E+++++ L+ ++ T  ++E  
Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      +V+ +DV + ++R+KL        YI T  G GY
Sbjct: 183 LEKVWGYEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGY 227


>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
 gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 21  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 81  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172
           ++  +I   +  +LS N   L+ +T E  + G  + LT  E+ ++  LLS   N    +E
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F     D         I V I  LR+KL++ +    YI+T+WG GY
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246


>gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 129/227 (56%), Gaps = 14/227 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + ++ D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPKLSGYD 62

Query: 62  VLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R+     P + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR
Sbjct: 63  VCR--RLGDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSR 120

Query: 121 ----GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  Q+L    I    L++NL  +T+  +G  + LT KE+ ++ LL+       ++E
Sbjct: 121 TPEAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  ++D       + +D+ + +LRKKL N       I+TV+G GY
Sbjct: 181 ALLEQVWDMDFAGGTRTVDIHVQRLRKKLGNQ---HEVIQTVYGIGY 224


>gi|182419360|ref|ZP_02950612.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237666528|ref|ZP_04526513.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376691|gb|EDT74263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237657727|gb|EEP55282.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K++ + I + L+ E + V ++  G D IE  +    + +ILD+ L DI G 
Sbjct: 1   MKILVVDDEKSIVNLIRMNLELEGYQVVISMNGIDAIEKFETERPELVILDIMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R  +      PV +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI+AI +R  
Sbjct: 61  EVIRKFQKIDSEIPVIMLTANSQINDKLLGLQLGADDYITKPFNSIELMLRIKAITKRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 + +     + G + V  D + V + G  I  T KE+  + L+    N   T+E 
Sbjct: 121 KKYNGKKENNNEFKIKG-IRVLKDERKVFIDGEEIIATYKEFDTLVLMMENCNKVFTREK 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++    E   + +D+ I +LRKKL   +     ++T++G GY
Sbjct: 180 LLKRVWGYEFEGNTRAVDILIQRLRKKLGVYS---ECLKTIYGVGY 222


>gi|116625937|ref|YP_828093.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229099|gb|ABJ87808.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 242

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ LA  ++  +        +   G +G+E  +  EFD I+LD+ L  + G 
Sbjct: 17  MRILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVMLPKLDGI 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +I TP+ +L+ + + +D   GL +GADDY++KPF+ + L+AR+RA+ RR +
Sbjct: 77  SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSFKVLLARLRALSRRRQ 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+L+   DL+++     V+  G  + L+  E+ ++E+L       +T+   ++ ++ 
Sbjct: 137 ADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   +DVFI +LR K+   AG    + TV G GY LRE
Sbjct: 197 HERDVQSNTLDVFIRQLRTKI-EPAGTTKLLHTVRGIGYTLRE 238


>gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus 10329]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     Q+L V  DL +++  +     G  + LT KEY ++ELL  +    L++    
Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  +I   L+ + + V +   G     +     +D IILDL L  + G 
Sbjct: 1   MRLLVVEDEITLCETIAKGLRLDGYEVDICYDGGTAWNMAMDESYDLIILDLNLPVMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R     T V ILS    ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 61  EVLHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+LS++  ++T   +G ++ LT KE  ++E L L +   + +E  + H++D
Sbjct: 121 VQNNVILSCGELSLDTKSRTAMARGEKLPLTRKELGLLEYLLLHQERPVPQEELIQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     I V I  LRKKL  AA G + I    G+GYV+
Sbjct: 181 SSVDSFSNSIRVHISALRKKL-RAALGYDPIANRIGQGYVI 220


>gi|108801194|ref|YP_641391.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870326|ref|YP_940278.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437173|ref|YP_001072864.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771613|gb|ABG10335.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696415|gb|ABL93488.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126236973|gb|ABO00374.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++++ L    + V     G + +     ++ D I+LDLGL D+ G E
Sbjct: 3   RVLVVDDEPQILRALKINLSVRGYEVTTAATGAEALRSAADHKPDVIVLDLGLPDMSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL----VARIRAIVR 117
           VL  LR   +S PV +LS  +   DKV  L +GADDY++KPF  +E      A +R   +
Sbjct: 63  VLAGLR-GWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRATK 121

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S G  + ++VTG  +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  
Sbjct: 122 ESDGD-EPVVVTGSFTVDLAAKRVVKNGAEVHLTPTEWGMLEMLVRHRGKLVGREELLKE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E   + V++ +LR+KL +      ++ T  G GY  ++
Sbjct: 181 VWGPAYAKETHYLRVYLAQLRRKLEDDPSRPRHLLTEAGMGYRFQQ 226


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++L+IED++ +   ++  L++  + V V + G+ G+E       D   I+LD+ L DI G
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+
Sbjct: 63  WSLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRT 121

Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G ++    T    +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN 
Sbjct: 122 YGASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 VWGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 222


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGY 238


>gi|42523998|ref|NP_969378.1| putative 2-component transcriptional regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576206|emb|CAE80371.1| putative 2-component transcriptional regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 202

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 8/201 (3%)

Query: 31  DLGEDGIELCKFY---EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDK 87
           DL E G     +    ++D +ILD+ L D  G +  R +R      P+ +L+ +S+ +DK
Sbjct: 2   DLAESGSAAESYMAQGDYDLVILDVMLPDQSGIDTARHIRRDGYEGPILMLTALSTTKDK 61

Query: 88  VRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVT-GDLSVNLDAKTVEV 143
           V GL +GADDY++KP++ +EL AR+RA++RR   S+G A S I+   DL ++L  +    
Sbjct: 62  VHGLDAGADDYLTKPYSFDELHARVRALLRRKAPSQGGATSNILKYADLELDLIQRKARR 121

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
               I LT KE+ ++E         L +     H++D   + E  +IDV+I  LRKK+ +
Sbjct: 122 NSQEISLTSKEFALLEYFMRNPERPLGRVSIAEHVWDIHFDSESNVIDVYINLLRKKI-D 180

Query: 204 AAGGKNYIETVWGRGYVLREN 224
               K  I TV G GYVL+EN
Sbjct: 181 VPFPKRLIHTVVGTGYVLKEN 201


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   +E+ +    + +ILD+ L    G++
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R  KIS  PV +LS      DKV GL+ GADDY+ KPF  +ELVAR++A++RR  
Sbjct: 66  VCREIR--KISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYE 123

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  IV  +L +N    T++V G  +    KE +++  L+   N   T+E  +  +
Sbjct: 124 HKDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           +      + + +DV I +LR+KL +   G+N+ ++TVWG GY
Sbjct: 184 WGYDFYGDSRTVDVHIKRLREKLDSE--GQNWQLKTVWGVGY 223


>gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1]
 gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI1]
          Length = 223

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     E D  ILD+ L    G  
Sbjct: 4   KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+G  +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E+  
Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227


>gi|326799960|ref|YP_004317779.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326550724|gb|ADZ79109.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 225

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ L  +I   L  E F +         ++  + Y++D I+LD+ L    G 
Sbjct: 1   MKILIIEDEEDLLDAITSSLLKEYFLIESASDYHTAMDKIQMYDYDCILLDIMLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+ ++ S  V I+S   S++DK++GL+ GADDY++KPF+  EL ARI+A++RR +
Sbjct: 61  QLLEQLKQSEKSENVIIISAKDSLDDKLKGLELGADDYLTKPFHIAELNARIKAVLRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
              +  I T ++ ++L+ + + V G  + L  KE+ ++    L  N  +TK     H++ 
Sbjct: 121 LDGKHTIETRNVVLDLNERQLLVNGEAVALNRKEFDILNYFLLNTNRLVTKSALAEHVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D  D+ + +  I   I  LRKKL  A      IE+V+G GY + E
Sbjct: 181 DNIDQADNLDFIYYQIKNLRKKLQQANAAIE-IESVYGVGYKMVE 224


>gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
 gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
           dadantii 3937]
          Length = 231

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD   A  +E  LK +NF V +   G +G+++ +  + D I+LD+ L  + G E
Sbjct: 5   RILIIEDDTDAAGVLEAYLKRDNFQVLLAGDGVNGLDMAQRLKPDLILLDVMLPGMNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR  K   PV +++ M    DK+  L+ GADDY++KP++  E+VAR++A++RR+ G
Sbjct: 65  VLTALR-RKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCG 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEV---QGHR--IHLTGKEYQMIELLSLRKNTTLTKEM 173
                +SL   G L V+LDA    V   QG R  + LT  E+ ++  L   +    +++ 
Sbjct: 124 VMTPGRSLTF-GSLEVDLDAMVATVADAQGQRQLLDLTPTEFSLLATLLRAQTRAFSRQE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L       D  E +++D  I  LRKKL  A G    + TV   GY  R+
Sbjct: 183 LLEACLPDSDALE-RVVDTHIYNLRKKL-EAVGIGGVLLTVRAVGYRFRQ 230


>gi|253989214|ref|YP_003040570.1| DNA-binding transcriptional regulator PhoP [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780664|emb|CAQ83826.1| two-component response regulator phop [Photorhabdus asymbiotica]
          Length = 222

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           MRIL++ED+  L H + + L+      ++ D   +  E   +Y    E D  I+DLGL  
Sbjct: 1   MRILIVEDNMLLRHHLTVQLRDTG---HLVDAAANAKE-ADYYLAESEPDIAIVDLGLPG 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G  ++R  R      P+ +L+   S ++KV  L +GADDY++KPF+ EE++AR++A++
Sbjct: 57  EDGLSLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALL 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR+ G    +I      ++L  K + + G  + LT  EY+++E+L    +  +TKE  + 
Sbjct: 117 RRNNGLVSQIIEFPPFRIDLSRKELTIYGESVKLTAFEYKIVEILMCNSDKIVTKESLMR 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            LY   +  E   IDV I +LRKK+ +    +  I TV  +GY
Sbjct: 177 QLYSDAELREGHSIDVLIGRLRKKIQDVWPYEA-IVTVRSQGY 218


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL+ LR  +KI  PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR 
Sbjct: 61  SVLQVLRQFSKI--PVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + ++
Sbjct: 119 QYLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 179 NINFDTDTNNIDVAVRRLRSKIDEGYEPK-LIHTIRGLGY 217


>gi|295428068|ref|ZP_06820700.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128426|gb|EFG58060.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|323439506|gb|EGA97227.1| respiratory response protein, SrrA [Staphylococcus aureus O11]
 gi|323441526|gb|EGA99177.1| respiratory response protein, SrrA [Staphylococcus aureus O46]
          Length = 222

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 10/222 (4%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77
           + L+ E+F ++    G++  EL     +  I+LDL L ++ G +V   LR  K  TP+ +
Sbjct: 1   MYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLREHK-QTPIIM 59

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVT 129
           L+      ++V G +SGADDYI KPF+  E+V R++A++RR        S  HA+ +I  
Sbjct: 60  LTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEF 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
             L ++ DA  V      ++LT KEY+++  L+   N    +E  L  ++      +++ 
Sbjct: 120 KHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVWHYEFYGDLRT 179

Query: 190 IDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETC 230
           +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 180 VDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 221


>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 232

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       S  +  D L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDNETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 228


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 119 KKTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 233

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD A+   I+  LK EN  +     GE+   L +   FD +ILD+ L D  GF+
Sbjct: 5   KVLLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLGDTDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R      P+  LSG     DK+  L  GADDYI+KPF+   LVA+I+A +RR   
Sbjct: 65  VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124

Query: 120 -RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + H  SL  I+ G   +N +   +      + L+ KE  +++      N   +K+    
Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     +  I+ V++  LRKKL +      + +TVWG GY
Sbjct: 185 KVWNNSIVDDNTIM-VYMRHLRKKLEDDPKNPKFFQTVWGIGY 226


>gi|238923307|ref|YP_002936822.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238874981|gb|ACR74688.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 218

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K ++  I L L    ++      G +  ++ +   FD IILD+ L  + GF
Sbjct: 3   IEILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVMLPKLNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  ++   +  PV  L+  ++++D++RGL SGA+DY+ KPF   EL+AR+  ++RR  
Sbjct: 63  ELMEYIK--PLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q L    D++++   + V   G  I LT KE++++ELL   KN TL +E     ++ 
Sbjct: 121 KMEQQLTFK-DIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +D+ I +LRKKL       + ++TV+  GY L E
Sbjct: 180 SEYSVESRTLDLHIQRLRKKLDIG----DSLKTVFKAGYRLEE 218


>gi|90580521|ref|ZP_01236327.1| DNA-binding response regulator [Vibrio angustum S14]
 gi|90438430|gb|EAS63615.1| DNA-binding response regulator [Vibrio angustum S14]
          Length = 235

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G E
Sbjct: 6   KILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVTWNPHLVLLDLGLPDADGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR +  R   
Sbjct: 66  FTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIR-VALRLHS 123

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H+ +  V+    GD+ +++  +TV   G  I LT KEY+++ LL+      LT +  L  
Sbjct: 124 HSTATEVSQYRFGDVLLDMAMQTVMFNGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G        + + I +LR K+  +     YI T  G GY L
Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIEKSPAQPQYIITENGVGYRL 227


>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 245

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA------IILDLGLT 55
           R+L++EDDK++  ++   L +E + V     G++  E   F +FD       I+LDL L 
Sbjct: 14  RLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEA-EARVFSQFDTRKKIDLIVLDLMLP 72

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ G E+ R +R   I TP+ I+S   S  D+V GL+ GADDY+ KPF   EL+AR RAI
Sbjct: 73  NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132

Query: 116 VRRSRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RRS  +      +  ++   ++S+      V      I+L  KEY+++EL         
Sbjct: 133 LRRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  L  ++      + K +DV I  +R+K+ + A   +YI TV G GY
Sbjct: 193 SRDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGY 242


>gi|319794193|ref|YP_004155833.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596656|gb|ADU37722.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+ED+  +A     ++++   + +V D   D      F    E+DAI+LDL L D 
Sbjct: 1   MRILLVEDELDMA---SWLIRALTQSGFVADHAPDARTAEAFMAGTEYDAIVLDLRLPDK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL  +R A   TPV IL+   +++D+VRGL  GADD+++KPF   EL AR+ A+VR
Sbjct: 58  HGLSVLADMRDADDRTPVLILTAQGALQDRVRGLNLGADDFLTKPFELVELEARLAALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +    LS + ++    ++G  + LT +E   +  L +R    + K      
Sbjct: 118 RSRGKQHPRLQCASLSYDSESHAFTLRGTLLSLTPREQAALTALLMRSGAPVGKSQLFAK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          I+V + +LR+KL+++      I TV G GY+L
Sbjct: 178 VFTNDSTAGPDAIEVVLHRLRRKLADS---DVRIVTVRGLGYML 218


>gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +EL L  E ++V + + G  G +     EFD +ILDL L  I G E
Sbjct: 4   RILIIEDELKIARFLELELVHEGYDVVLENDGRSGCDKALAEEFDLLILDLMLPCISGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  +   P+ IL+    + DKV GL +GA+DY++KPF  EEL+AR+R I++R   
Sbjct: 64  VCRRIR-RQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYGT 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +  +  +++  G L+++ D   V      I LT KE+Q++  L   +   +T+E  L +
Sbjct: 123 INVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILEN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++         + DV+I  LR K+ +  G K  I T+ G GY
Sbjct: 183 IWGIDYMGLTNVTDVYIRYLRTKIDDKYGVK-LIHTIRGMGY 223


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 15/228 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56
           +IL+IED++++++ +E  L  E +NV+      DG+   K +E      D ++LD  +  
Sbjct: 16  QILIIEDEESISNLLETELSFEGYNVFS---AADGMSGLKIFEEKQEYLDVVLLDWMIPK 72

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR ++      PV  ++    + DKV GL +GADDY++KPFN EEL+AR+R I 
Sbjct: 73  LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R++   A  +   G +S+N    TVE Q     LT +E+ ++  L   +   ++++  L 
Sbjct: 133 RKNTQPA--IYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      ++  +D ++  LRKKL      KN IET+ G GY L ++
Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLD-----KNMIETIRGLGYRLNKD 233


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE+ +EL      D ++LD+ L  + GF V
Sbjct: 34  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGFAV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 94  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 152

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  G+L V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 153 SASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 212

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 213 AEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 262


>gi|241664806|ref|YP_002983166.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|240866833|gb|ACS64494.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 236

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V+V   G    E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVHVVHDGVFATEQLTRQTHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L   R     TPV IL+    + DKV GL +GADDY+ KPF   ELVAR+ A++RR  
Sbjct: 61  TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRN 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   A+  I+ G L ++   + + V    + L+ +E+ ++ELL LR+   ++K     
Sbjct: 121 DSTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQE 180

Query: 177 HLYD-----GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL       G    +V     I+V++ ++R+K+ ++   +  I TV G GY+L+  A
Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHS---EAEIVTVRGFGYLLQARA 234


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 253


>gi|86360536|ref|YP_472424.1| two-component response regulator [Rhizobium etli CFN 42]
 gi|86284638|gb|ABC93697.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CFN 42]
          Length = 230

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V      E   +       D ++LDLGL D PG 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVREAPNAESARQSVADDMPDLVVLDLGLPDTPGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L       LT +  L  +
Sbjct: 126 QQQGERAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLVQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V+I ++R+K+       +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYIRQIRQKVEKIPDQPHYITTETGVGYRLRE 228


>gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 226

 Score =  117 bits (294), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G+      ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVNGAISGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPIIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +S+  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL   AG    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALAGNMMTIETVRSVGYRIR 226


>gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 223

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD A+  S+E  L+ + ++V     G   +     +  DA++LD+ + +  G 
Sbjct: 1   MRILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEPNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RALR A   TP+ +L+    + D+V GL +GADDY++KPF  EEL AR+RA++RRS 
Sbjct: 61  EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRS- 119

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             AQS ++T  D+ ++L    VE  G R+ LT  E  ++EL        L++      ++
Sbjct: 120 -GAQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                P+   + V+I  LR KL  A GG   I+TV G GYVLRE
Sbjct: 179 GYDFGPQSNALWVYISYLRGKL-EADGGARLIQTVRGLGYVLRE 221


>gi|218676350|ref|YP_002395169.1| putative two-component response regulator [Vibrio splendidus LGP32]
 gi|218324618|emb|CAV26167.1| putative two-component response regulator [Vibrio splendidus LGP32]
          Length = 243

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  LA  +++ LK +  NV   +  E   +L    +FD ++LD GL D  G + 
Sbjct: 12  MLLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K+ 
Sbjct: 132 ESVTQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 192 LLDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|332142206|ref|YP_004427944.1| transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552228|gb|AEA98946.1| transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 236

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 124/213 (58%), Gaps = 6/213 (2%)

Query: 20  LKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
           L+ + F+V+    GE+ +  L    ++D ++LD+ +  + G +VLRA+R  K  TP+ +L
Sbjct: 25  LEGDGFSVHAIHSGEEAVNTLLNSNQYDTVVLDIMMPGMSGLDVLRAVRAEK-QTPILML 83

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HAQSLIVT--GDLSVN 135
           +G     D++ GL+ GADDY+ KP N  EL ARIRAI+RR++   A + ++T    +S++
Sbjct: 84  TGRGDDIDRIVGLEMGADDYLPKPCNPRELGARIRAIIRRTQQLKAPATVITELHGISLD 143

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
           + A+T  V+G  I LTG E+  + LL  R   T++K+     +     E   + +DV I 
Sbjct: 144 IGARTASVKGRPITLTGAEFNALCLLMERAGQTISKQEMTQEVLSRPLEAYDRAMDVHIS 203

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++R+KLS A G  + I+++   GY +  + + +
Sbjct: 204 RIRQKLS-AVGVNSVIKSIRKVGYQMLTSPQSQ 235


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + L +E + +V   D  E   ++    + + +ILD+ + ++ G
Sbjct: 13  MKILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDG 72

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK+RGL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 73  MQVVKELR-KESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 131

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  A S    ++    L +N D+  V+ V G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 132 KMQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEI 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 192 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGY 236


>gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
 gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TMA 21]
          Length = 228

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQSG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 130/223 (58%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E++AR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S I+ G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYIL-GNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      +IET+ G GY
Sbjct: 184 RIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGY 226


>gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +I+D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WNYDFGGQANIVELYISYLRKKID--AVHPPMIHTVRGAGYVIKP 244


>gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 238

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 115/215 (53%), Gaps = 8/215 (3%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S++  L+   F+V   D G   +        DA+ILD+ +  + G  V+ ALR      P
Sbjct: 22  SLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIP 81

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LI 127
           +C+LS  SS+ D++ GL++GADDY++KPF   EL+AR++A++RR    +++       +I
Sbjct: 82  ICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYGVI 141

Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187
               L V++  + V V    I LT +E++++  L+      L++   L  ++      + 
Sbjct: 142 HVDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADT 201

Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 202 NVVDVFVGYLRKKL-ELKGRHRLIHTVRGYGFVLR 235


>gi|34540512|ref|NP_904991.1| DNA-binding response regulator [Porphyromonas gingivalis W83]
 gi|34396825|gb|AAQ65890.1| DNA-binding response regulator [Porphyromonas gingivalis W83]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L  +I+  L  E + V       +G++    Y++D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEPDLRETIQKFLLGERYIVETAATMNEGLDKVLVYDYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ L+    +  + I+S   +IEDKV+G++ GADDY++KPF+  EL  RI+ ++RR  
Sbjct: 61  TLLKELKKRGKTENLIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNVRIKGLIRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            H    I  G++S+  D   V V+GH + L  KEY ++  L  R N  + K      ++ 
Sbjct: 121 AHGAMEIKLGNVSLVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D  D+ +    +   I  LRK++ N AG    I++V+G GY L E  +D
Sbjct: 181 DYIDQADNYDFVYAQIKNLRKQM-NDAGATIEIKSVYGFGYKLIEREED 228


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +    ++ GED  +      FD ++LD+ L  I GFEV
Sbjct: 6   LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  +I    P+ +L+      DK+ G + G DDY+ KPF+  EL  RIRA+++R R
Sbjct: 66  CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  +  G L V++   +V + G  + LT  E++++  L  RK    ++EM L+ 
Sbjct: 126 RQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D       + ID  I +LR+KL  +      I+TV G GY   E   D
Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGESG---RQIKTVRGLGYKFDEEGDD 232


>gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52]
 gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
 gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395]
 gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae 12129(1)]
 gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC9]
 gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae B33]
 gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae BX 330286]
 gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae MJ-1236]
 gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
 gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholera CIRS 101]
 gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae RC27]
 gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae INDRE 91/1]
 gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
 gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae LMA3894-4]
          Length = 228

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224


>gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus
           ATCC 19977]
 gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium
           abscessus]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L +  + V     G   +      + + +ILDLGL D+ G E
Sbjct: 3   RVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMDGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VL  LR      PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR + 
Sbjct: 63  VLAGLR-GWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGTP 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ ++ T    V+L +  V   G  +HLT  E+ M+ +L   +   + ++  L+ ++ 
Sbjct: 122 DSAEPVVHTETFDVDLSSHKVIRDGREVHLTPTEWSMLAVLVRNRGKLVGQKELLHEVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E   + V++ +LR+KL        ++ T  G GY  +E
Sbjct: 182 PAYSSETHYLRVYLAQLRRKLEIDPAHPKHLLTEAGMGYRFQE 224


>gi|154246206|ref|YP_001417164.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160291|gb|ABS67507.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 221

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD++LA  ++  L S  + V +  D+  D + L     ++ ++LDLGL +  G
Sbjct: 1   MRILIVEDDRSLASGLKRSLTSLGYAVDHEADVA-DAVGLATREAYNLVVLDLGLPNGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRA+R   + TPV IL+    + +KV+ L  GADDY+ KPF   E  AR+RA+VRR 
Sbjct: 60  YDVLRAIRRNGLKTPVMILTARDHVSEKVKALDLGADDYVHKPFALAEFEARVRALVRRG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +  ++  G L  +   +   ++G  + L  +E  ++ LL L+    + K   ++ ++
Sbjct: 120 FGVSDVVLEFGPLQFDTAQQVARLEGSPLDLRRRELAVLHLLLLQAGKLVPKARLISEVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D      ++++I +LRKKL   AGG   I TV G GY+L
Sbjct: 180 GLDDAVGPNALELYIARLRKKL--GAGGLR-IRTVRGLGYML 218


>gi|168704577|ref|ZP_02736854.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 228

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 103/200 (51%), Gaps = 2/200 (1%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L+ E F V                ++D ++LD GL    G  +L+ LR A   TPV +L+
Sbjct: 22  LREEGFTVESAADARAAWHALATADWDVVLLDRGLPGEDGLSLLKRLRAAGRFTPVLMLT 81

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAK 139
              ++ D+V GL +GADDY++KPF  +EL+AR+RA+ RR      + +   D+ V+L  +
Sbjct: 82  ARDAVPDRVAGLDAGADDYLTKPFAFDELLARVRALARRPAAVTGTTLSHADVRVDLATQ 141

Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199
             E  GH++ LT KEY ++ L        LT+     H++D R +     ++V +  LR+
Sbjct: 142 RAERAGHKLDLTAKEYALLVLFLRHPGQVLTRTRIYEHVWDERYDGTSNTLEVHVKDLRR 201

Query: 200 KLSNAAGGKNYIETVWGRGY 219
           KL     G   I T+  RGY
Sbjct: 202 KLEGH--GPRLIHTLRNRGY 219


>gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTPYALLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   I   LK  +F++     G+  +EL    +FD +I+D  L  + G +
Sbjct: 3   RILLIEDEDNIRKIIAYDLKKADFDIVECADGKTAVELAMKEDFDVLIIDWMLPHVSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ LR   I     +L+      D +   + G DDYI+KPF+  EL+AR+ A ++R   
Sbjct: 63  IVKKLRNEHIDAIFIMLTARDDETDILYAFEQGVDDYITKPFSPRELLARVNAHLKRQSR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDLS+++  +   +  H + LT KE+ ++E     K+  L+++  LN ++  
Sbjct: 123 KQEKRLAVGDLSMDMKRREAYIGDHMMTLTKKEFDLLEYFIQNKDIVLSRDSILNDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + +I+DV + KLR KL+     + +I++  G GY+L E
Sbjct: 183 DYDGDTRIVDVHVFKLRNKLN---ASRVHIKSSRGVGYLLEE 221


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  + + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 119 --SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S G    L+++ G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 PGSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGY 225


>gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+A      L  E F V ++  G  G+E      FD I+LDL L  I GF 
Sbjct: 3   KILIIEDDTAIAAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLMLPGIDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R LR   +  P+ +++      DK+RGL  GADDYI KPF+   LVAR++A       
Sbjct: 63  VCRRLR-ESLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R++   A   I  G + +N D   V V    I L  KEY+++  ++   +  L +E   
Sbjct: 122 LRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V I +LR K+    G   YI+TV G GY
Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGY 225


>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 112/218 (51%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ALA  +      E + V     G+ G+EL      D ++LD+ L  + G+ 
Sbjct: 3   KILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  A R    S P+ +L+      D VRGL+ GADDY+ KPF+  EL+AR+RA +RR R 
Sbjct: 63  ICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRRHRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +     GD  ++ D+  +  +G  + LT KEYQ++E L +     LT++  +  ++  
Sbjct: 123 EDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTRQGIMASVWGS 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +D  +  LR K+        ++ T+   GY
Sbjct: 183 SVMVTQRSVDRCVTTLRGKIEKEPSRPRHLLTIRDVGY 220


>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
 gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   I L L S  + V   D   D +EL K       I DL L  + G +
Sbjct: 4   RIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS      DKV GL SG+DDY++KPF   EL AR+R+++RR   
Sbjct: 64  AIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR--- 120

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H  S +I T  L V+   + +++ G ++ LT KEYQ++  L   K+  + +E  LN ++ 
Sbjct: 121 HVTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                E + +DV I  LR KL++   G  YI+T+   GY   E   D
Sbjct: 181 YDFIGESRALDVHIRALRSKLND--DGHKYIKTIRSVGYRFYEEGDD 225


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 131/223 (58%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++    T    +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 221


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GADTIRTVHGVGYAF 235


>gi|325528614|gb|EGD05708.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 241

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L S  F V V   G+  +   + +    +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDSYEFAVTVVRRGDLAVAAVREHRPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A    PV IL+  + + D++ GL++GADDY++KP     LVAR RA++RR   
Sbjct: 69  VCRRIR-AFTHVPVLILTARADVYDQIAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AETGPRPAAPEALVFGELTISPPNRTVTWRGQPVDLKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + +E ++  V   G   ++  K    D +I+D+ L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA    PV IL+   +  DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 74  TKRI-VADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 133 KVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSETIRTVHGVGYAF 234


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +   +  E D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    PV  L+      DKV GL  G DDY++KPF+ +E+VARIRA++RR+  
Sbjct: 69  ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I   DL ++ DA  V   G  I L+  E++++  L +  N  L+K   L+H++
Sbjct: 129 GEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GY++R
Sbjct: 189 EYDFNGDASIVESYISYLRRKVDRPE-WPALIQTKRGVGYLMR 230


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ + +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKVVR-KDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q     ++  G L +N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENSVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G   I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGY 224


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V+    GE+ +E  K  + D I+LDL L  + G +
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R     TP+ ++S   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  + +  ++ G+L +N         G ++ LT +E++++  L+      +T+E  
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY +
Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|293402081|ref|ZP_06646220.1| KDP operon transcriptional regulatory protein KdpE
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304473|gb|EFE45723.1| KDP operon transcriptional regulatory protein KdpE
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 227

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDDK++   + + L+++++ V   + G +GI L      D I+LDLGL DI G E
Sbjct: 4   KILLIEDDKSIQRFLRISLETKDYKVISAETGIEGISLYMTDNPDLILLDLGLPDIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R A+    + ++S     ++KV  L  GADDYI+KPF+  EL+AR+R  +R+   
Sbjct: 64  VLSQIR-AQSEVAILVVSARGQEQEKVEALDHGADDYITKPFHINELLARVRVALRKKTS 122

Query: 122 HA-QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ + T D L ++ +   V V+   IH+T  EY+++ LL       LT    +  ++
Sbjct: 123 DVIKTKVFTMDTLKIDFEKYKVYVEDKEIHMTPIEYKLLVLLVENAGKVLTHSFIIRKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + + VF+  +R+K+   +    YI T  G GY   E+
Sbjct: 183 GYSTTEDSQSLRVFMANIRRKIEKDSAHPRYIITEVGVGYRFVES 227


>gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042]
          Length = 239

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LISTIRGMGY 232


>gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+ +   I   L  E + V  T  G   IE  +  +F  +ILD+ L  I G+
Sbjct: 5   IKILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIMLPKIGGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R  K +TPV ILS      DK+ GL  GADDY++KPF   EL AR++A +RR  
Sbjct: 65  EVLQKIR-EKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFL 123

Query: 119 ---SRGHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   Q+ IV   D+ ++++   V+V G+ + LT KE+++++L         TK   
Sbjct: 124 KFSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++      +   + V I +LR+K+        YI+T+WG GY L E
Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKLVE 232


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   I+  L+ E + V     G   ++L +  + D IILD+ L +  G  V
Sbjct: 4   VLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  + +   P+ ++S      DK+ GL+ GADDY++KPF+  ELVAR++A +RRS 
Sbjct: 64  CRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSE 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +V G+L ++ D   +E+ G + +LT KE+++I  L+ +     +++ 
Sbjct: 124 EVETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDY 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++      + + +DV I  +R+KL      + YIETV G GY  +E++
Sbjct: 184 LLEQIWGYDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRFKESS 235


>gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD   A  +E  LK EN+ V +   G  G++  + ++ D I+LD+ L  + G E
Sbjct: 5   RILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARRWQPDLILLDIMLPGMNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR  +  TPV +++ MS   D++  L+ GADDY+ KP++  E+VAR++A++RRS+ 
Sbjct: 65  VLAALR-RRDDTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSQN 123

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A    ++    L V+  A T  ++       R+ LT  E+ ++  L        T+   
Sbjct: 124 SAPVTEILRWAGLVVDPIALTAVIECDSGTSRRLDLTPTEFSLLVTLMRAPTRPFTRLFL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L H     D  E +++D  +  LR+KL  AAG  + +  V   GY  R+
Sbjct: 184 LEHCLPESDALE-RVVDTHVYNLRRKL-EAAGISDVLPAVRSVGYRFRQ 230


>gi|227540357|ref|ZP_03970406.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227239681|gb|EEI89696.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 223

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  S++  L++E + V V       +     Y +D I+LD+ L    G 
Sbjct: 1   MKILIVEDELELQRSVQEFLEAEQYVVEVASDYSSALSKINLYTYDCILLDINLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  K      I+S   SI+DK+RGL  GADDY++KPF+  EL ARI+A++RR +
Sbjct: 61  TLLDELR-GKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N D +++ V    +H + KE+ +     L KN  +TK     H++ 
Sbjct: 120 LAGNPVVQLNNLQINYDTRSICVDDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVW- 178

Query: 181 GRDEPEVKIIDVF---ICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D      +D     I  +RKKL         I+ ++G GY
Sbjct: 179 GDDSDMADNLDFIYSQIKNIRKKLKEHHAQLE-IQAIYGVGY 219


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  LK+  +  ++   G + + + K  + + I+LDL +  + GF+
Sbjct: 5   KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGMDGFD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + ++  K   +T + +L+      DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +  +  L V+ +   V++QG+++ LT KE++++++L   K   L +EM L+
Sbjct: 125 ASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+        +IET+ G GY
Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGY 227


>gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis EO147]
 gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 4/233 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDELKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG+ I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
              + +  ++D  I ++R K+      K  I TV G GYVL +  + E+CE L
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQDYEPK-LIHTVRGMGYVLEQ--RGESCESL 229


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L H ++  L  EN    +   G++GI   K  E+  +ILD+ +  + GF+
Sbjct: 31  KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  +R      PV +L+  S    KV GL+SGADDY++KPF+ +E +AR+ +++RR   
Sbjct: 91  VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 149

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S       +   +L+++L++++V  +   + L  KE+ ++   +  +   LTK+    
Sbjct: 150 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 209

Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    EP V     I   I KLRKK+ +      YI+TV G GY
Sbjct: 210 KVW---QEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGY 252


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G+ G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKINGLE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R +     PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGGND 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL ARIRA++RR   
Sbjct: 63  VCKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   A+ ++  G + +++D   V V    + L  KE+ ++E L   +   LT+   ++
Sbjct: 122 ADSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV + +LR K+ +     + + TV G GY L
Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKL 226


>gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71]
          Length = 219

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  +   
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDSR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL     G ++I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGE 218


>gi|331002058|ref|ZP_08325578.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411854|gb|EGG91259.1| hypothetical protein HMPREF0491_00440 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 223

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 118/202 (58%), Gaps = 2/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L+ +     + + + V     GE  +EL     FD +I D+ +  + G 
Sbjct: 1   MRILLAEDEVGLSRAYATAFRMQGYEVVQAFDGERALELASSEIFDLMIFDIMMPKMTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVL+ +R A  ST + IL+ MS + DK+ GL  GAD+Y++KP +  EL+ARIR++ RR  
Sbjct: 61  EVLKKIRDAGNSTYIIILTAMSELNDKIEGLDLGADEYLTKPIDLGELLARIRSLERRID 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++++  G + +N+  + +  + + I L GKE +++E+L L KN  L+ +   NH++
Sbjct: 121 KNFNENILTFGSVKLNVAEQELSAK-NSIILAGKETKLMEVLMLNKNKKLSTDYIYNHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKL 201
              ++ +   + ++I  L++KL
Sbjct: 180 SKDEDSDAGYVWIYISYLKQKL 201


>gi|329116124|ref|ZP_08244841.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           parauberis NCFD 2020]
 gi|326906529|gb|EGE53443.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           parauberis NCFD 2020]
          Length = 222

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 8/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+I+DD  L   I  +L  +N+ V  T L  + I+L K   +D IILD+ + DI GF
Sbjct: 1   MRILVIDDDIDLLKMIRTIL-CKNYQV-DTFLMPNPIDLNKLKVYDLIILDVTMPDISGF 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+  R   I +P+ +L+     +DK+ G   GADDYI+KPF+  EL AR+ A +RR R
Sbjct: 59  EFLKKYRDI-IDSPILLLTAKDFEKDKIEGFALGADDYITKPFSINELRARVEAHIRRER 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
                 I+   +S +L ++ V      ++LT  EY + ELL   K    +KE     L  
Sbjct: 118 REKHVRIIDSMVSCDLQSRQVFCFDSEVNLTSSEYAICELLLKNKGQVFSKEKIYIKLYG 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           YDG  +    I +  I  +RKK ++   G N I+T+WG GY
Sbjct: 178 YDGNGDSNTSITER-IKLIRKKFTSL--GINPIKTIWGVGY 215


>gi|308187241|ref|YP_003931372.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1]
 gi|308057751|gb|ADO09923.1| Transcriptional regulatory protein basR/pmrA [Pantoea vagans C9-1]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L L+ E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDALLLQGLMLALEGEGYVC-------DGVTRVRDAEAHFASGLYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  LR  K  TPV IL+   +I +++ GL +GADDY+ KPF+ +EL+ARIR
Sbjct: 54  LPDEDGLHFLIRLRRQKKMTPVLILTARDTISERIAGLDAGADDYLIKPFSLDELLARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR      S +  G L++++  + + +    + LT KE+ ++  L L+    + +E+
Sbjct: 114 ALIRRHVNQGDSHVRVGALALDMTHRQITLSDVLLDLTPKEFAILSRLMLKAGNPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +Y+   EP    ++V I  LR K+     GK+ I TV G GY L
Sbjct: 174 LYQDIYNWETEPSTNTLEVHIHNLRDKI-----GKSAIRTVRGFGYAL 216


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 60  YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L
Sbjct: 120 KKTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 EKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|188994617|ref|YP_001928869.1| probable two component system response regulator [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594297|dbj|BAG33272.1| probable two component system response regulator [Porphyromonas
           gingivalis ATCC 33277]
          Length = 245

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L  +I+  L  E + V       +G++    Y++D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEPDLRETIQKFLLGERYIVETAATMNEGLDKVLVYDYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ L+    +  + I+S   +IEDKV+G++ GADDY++KPF+  EL ARI+ ++RR  
Sbjct: 61  TLLKELKKRGKTENLIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNARIKGLIRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            H    I  G++S+  D   V V+GH + L  KEY ++  L  R N  + K      ++ 
Sbjct: 121 AHGAMEIKLGNVSLVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D  D+ +    +   I  LRK++ N AG    I++V+G GY L E
Sbjct: 181 DYIDQADNYDFVYAQIKNLRKQM-NDAGATIEIKSVYGFGYKLIE 224


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            RIL+ +D++ +   +   L+ E +       G + IE  K   F  ++LD+ + ++ G 
Sbjct: 6   FRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGL 65

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
                +R+ + S  P+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI A +RR+
Sbjct: 66  TA--CMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRT 123

Query: 120 RGHAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++    T D   LS++++ + V V+G  ++LT KE+ ++ L         ++E  L+
Sbjct: 124 HSFSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++       ++ +D  I  LR KL  A G   YI+TVWG GY    N 
Sbjct: 184 QIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D I+LD+ L  + GF V
Sbjct: 13  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 73  CRRLR-AESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A          Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|313884593|ref|ZP_07818354.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620377|gb|EFR31805.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 237

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 125/239 (52%), Gaps = 13/239 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL+IED+++++  +E+  ++EN+     + G +G E  K     +D +ILDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMEMFFENENYTATFKNDGLEGFEAYKAEPKHWDIVILDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R     TP+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMQICRQIRKISAETPIIMLTARDSESDQVIGLEMGADDYVTKPFSPMTLLARMKALHRR 120

Query: 119 SR--------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTL 169
           ++          A+  + T  L +N   +        I +LT KE+ ++   +       
Sbjct: 121 AQIVPSDQHEADAEFDVTTDHLKINTATREARYNDQVIENLTPKEFDLLVTFAKSPKRVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++  L  L++     + + +D  I KLR+K+     G   I+TVWG GY  +E    E
Sbjct: 181 SRDDLLTSLWEDPFYGDERTVDAHIKKLRQKIE--VVGPQLIQTVWGVGYKYQEPGDQE 237


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+V   GE+ ++       D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     S I  GDL ++ +A  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR N ++E
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235


>gi|325912950|ref|ZP_08175324.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
 gi|325477764|gb|EGC80902.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 60-B]
          Length = 245

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 18  VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 75

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 76  SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 134

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 135 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 195 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 241


>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
 gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L  E + V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 11  RILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 71  ICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 130

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++L++ G       L+++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 131 MGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++  + +     ++  I +LR K+         I TVWG GY
Sbjct: 191 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGY 234


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L  + + V   D G+    L     FD ++LD+ +    G  
Sbjct: 30  RILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMPGEDGLS 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL ARI A++RR R 
Sbjct: 90  LCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQRM 149

Query: 121 --GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              H   L     I  G  S++L  + +   G  I LT  E+ +++ L+      L ++ 
Sbjct: 150 LGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRDR 209

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  L  GRD E   + IDV + +LR+ + +      YI+TVWG GYVL
Sbjct: 210 LIE-LSRGRDHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVL 257


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E +  +    G   ++  K    D ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  +   P+ +L+  S   D V+GL+SGADDY+ KPFN +ELVAR+R  +R +  
Sbjct: 64  ICARIR-EESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++    V     +I+LT  E++++  L+++     T+EM L  ++  
Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + + ++++V + +LR K+         + TV G GY
Sbjct: 183 HYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGY 220


>gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|319762980|ref|YP_004126917.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330825060|ref|YP_004388363.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317117541|gb|ADV00030.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329310432|gb|AEB84847.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED++ L   +   L+     V   D G          ++DA++LDLGL    G 
Sbjct: 1   MRILLAEDERPLGEWLAKALEQGGCRVDWCDDGRLVERALAERDYDALVLDLGLPGRDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR      PV +L+   ++ ++VR L  GADD+++KPF   EL AR+ A+VRR+R
Sbjct: 61  TILRRLRARDERIPVLVLTARDTLGERVRSLNEGADDFLAKPFELAELEARLTALVRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L  +   +   +    + L+ +E+ +++ L  R    LT++  ++ ++ 
Sbjct: 121 GSEHPRLACGPLQFDTVTRQFTLSAEPLQLSPREHALLKALVQRSGEPLTRQQAMDRVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +IDV + +LRK+L    G    I T  G GYVL
Sbjct: 181 DDEDVQPSVIDVLLHRLRKRLE---GSGVRIHTYRGLGYVL 218


>gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus
           thiooxidans]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+   A  ++       + V V D G DG  L +  E++ I+LDL L    G+
Sbjct: 1   MKILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+ + ++  +V GL+ GADDY+ KPF   EL+ARI +I+RRS 
Sbjct: 61  WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I   DL ++L    +      I+L  +E++++  L       LT+      ++D
Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  ++DV I +LR+K+ +    K  I T+ G GYVL
Sbjct: 181 MHFESDSNVVDVAIRRLRRKVDDPFPDK-LIHTLRGVGYVL 220


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S++  G ++++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|221065578|ref|ZP_03541683.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710601|gb|EED65969.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 222

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD+ +  +I   L+ E  +V                 F A+ILDLGL D  G 
Sbjct: 1   MRVLCVEDDELIGQAIRAGLRREGIDVVHVTTAMQAEAAVTQEAFHALILDLGLPDKEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R  + S P+ I+S   +IE ++ GL  GADDY+ KPF+  EL  R+ A++RR++
Sbjct: 61  ELLKIIRAIEPSMPILIVSARDAIEHRLMGLHQGADDYLIKPFDLRELAVRVHALLRRTQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  G L +        +    + L+ +E  +I  L+  +N+ +  E+    L+ 
Sbjct: 121 GRSSQWIHAGPLRLEPATGQAWLHEQAVQLSRREIDLIAHLANARNSWMRSEVLNERLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V I  +RKKL N A     IE   G GY L
Sbjct: 181 LHEEVGSNALNVHIHNIRKKLGNEA-----IENSRGLGYRL 216


>gi|315653104|ref|ZP_07906029.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|315489469|gb|EFU79106.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 245

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 18  VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 75

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 76  SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 134

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 135 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 195 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 241


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             +  +     GDL +++    + V+G  + LT  E++++  L+        +    E  
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L + ++G +    + ID  +  LR KL +      ++ TV G GY     A+ E  +
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQPEKAD 238


>gi|109453374|gb|ABG34167.1| PhoP [Salmonella bongori]
          Length = 213

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGAD+Y++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADEYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|186475768|ref|YP_001857238.1| osmolarity response regulator [Burkholderia phymatum STM815]
 gi|184192227|gb|ACC70192.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 244

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 23  ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+   
Sbjct: 32  QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 91

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134
              D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+ ++
Sbjct: 92  EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETSEVFEFGEFAL 151

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192
           NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + +DV
Sbjct: 152 NLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            I +LRK +    G   +I+TVWG GYV 
Sbjct: 210 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|57234870|ref|YP_181048.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225318|gb|AAW40375.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 225

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++L IEDDK +  S+ L+ KS   +       LG+ GIE     +FD  I+DLGL DI 
Sbjct: 1   MKLLFIEDDKKIVESVFLLFKSFWPDMETKAVHLGKTGIEAVYKDDFDIAIIDLGLPDID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VL+ +R A  S P+ IL+  ++ ++     + GADDYI+KPF   EL+AR++++++R
Sbjct: 61  GINVLKQIR-AFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKR 119

Query: 119 SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +Q L I  G        K +  + +R++LT  E Q++ +L  +  +T++       
Sbjct: 120 LNKTSQDLGIKYGHWRFGNSLKEISYKNNRVNLTVTEGQLLHILLSKTGSTVSYADISKS 179

Query: 178 LYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ GR+E   K  I   I ++R+KLS   G K +I  + G GY + E
Sbjct: 180 IW-GRNEYYAKETIKTHIMRIRQKLSRIDGAKEFIINIPGVGYQITE 225


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  + G E
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESLSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E++ +DV I +LRK ++     ++ I TV   GY L
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYAL 227


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
 gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +     IILD+ + D+ GF
Sbjct: 4   VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQEIR-KKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G   + ++  D+ ++   +TV +Q   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      +   I  FI KLRKK+        YI+TV G GY
Sbjct: 183 YTQVWAEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGY 227


>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+L+ED+  +A  IE  L+     V V   G  G EL +   FD +ILD+ +  + G E
Sbjct: 3   KIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI+A++RRS+
Sbjct: 63  LCRMYRQRFGYHSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLRRSK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V GDL ++   +        I LT KEY+++E   L +   L++   L  ++D
Sbjct: 123 EVPVQQLVCGDLILDCTLRRARRGNMDIDLTVKEYRLLEYFLLHQRAVLSRLTLLRDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV++  LR K+      K  I TV G GY++ +
Sbjct: 183 KNFDTNTNVVDVYVNYLRAKIDKGFEDK-LIHTVVGVGYMMTD 224


>gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ L + + +D +ILD+ L  I G+
Sbjct: 1   MRILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  +R    ST V +L+    + DK+RGL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  GVLGQIR-QDSSTRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSE 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++   DL ++           RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QAPVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL E
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFERK-LIHTLRGVGYVLEE 222


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIQWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219


>gi|285019588|ref|YP_003377299.1| two component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283474806|emb|CBA17305.1| probable two component system regulatory protein [Xanthomonas
           albilineans]
          Length = 241

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 122/219 (55%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   +++ L+++ + V     G +G+     +  + ++LD+GL D  G  
Sbjct: 14  RILVIDDEPQIRRFLDISLRAQGYRVQQAATGGEGLAQLAAHGAELVVLDVGLPDQDGHS 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VLR LR    S PV +L+  +   +KV+ L +GA+DY++KPF  +EL+ARIR ++R   +
Sbjct: 74  VLRELRQWS-SVPVIMLTVRAGEAEKVQALDAGANDYVTKPFGVQELMARIRVLLRMQPT 132

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ +   G L +++  + V ++G  + L+ KEY ++ LL       +T+   L  L+
Sbjct: 133 TGEAEPVFDDGHLHIHIGLREVRLEGEPLPLSRKEYALLALLLRHSGRVVTQPQLLRELW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
               + +   + + + KLR+KL ++A    YI T  G G
Sbjct: 193 GPTHQDDTHYLRILVGKLRQKLGDSAVAPRYIATEPGVG 231


>gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 224

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +   + ++L+   ++      G +G+ L    E   I+LDL L  + G  V
Sbjct: 4   ILIIEDDAGINDMLRVLLRQNGYDTISAYSGTEGL-LAHGEEVSLILLDLMLPGLSGEAV 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
           ++ L+  K + PV + S +  +  KV     GADDY++KPF+ EEL+ARI A +R     
Sbjct: 63  IKGLKEKK-NVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLPE 121

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +++G    ++   D+ +N    TV   G  + L+  E+ ++EL       T TK    + 
Sbjct: 122 QTKG---DVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDT 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D  +  +   ++V I KLRKKL   +  ++YIETVWG GY LR+
Sbjct: 179 VWDYENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRLRK 224


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++ L+ED++++   +E  LK E F   V+  GE+ +   K  E D ++LD  L D+ G +
Sbjct: 4   KVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLSGID 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R+L+  K     P+ +L+     EDKV  L +GADDYI+KPF   ELVARI A++RRS
Sbjct: 64  ICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRS 123

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A+   V  DL ++   + V     +I L   EY+M++          +++  L ++
Sbjct: 124 KPRVAEDKAVYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK + N  G K  I TV   GY L
Sbjct: 184 WPDNINVENRTVDVHIRRLRKAI-NLDGTKELIRTVRSAGYSL 225


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  I G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKIFGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R    + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V   G  + LT  E++++  L        T+E  +
Sbjct: 124 RGEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 6   ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 66  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    ++ I  GD+ VN+  + V +    + LT +E++++ELL   +   L      
Sbjct: 124 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+TVWG GY
Sbjct: 184 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 227


>gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
 gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +VL  LR + I+TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     Q+L V  DL +++  +     G  + LT KEY ++ELL  +    L++    
Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++D   + +  +IDV + +LR K+ +    +  I TV G GY L E+
Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227


>gi|329920981|ref|ZP_08277509.1| response regulator receiver domain protein [Lactobacillus iners
           SPIN 1401G]
 gi|328935257|gb|EGG31737.1| response regulator receiver domain protein [Lactobacillus iners
           SPIN 1401G]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 2   VKVLVVDDDKEIVELLSIYLKNENYDPIVACDGREA--LTKFRMDPSITCIILDIMMPEM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 60  SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225


>gi|309806615|ref|ZP_07700611.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|312870847|ref|ZP_07730952.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 3008A-a]
 gi|312873582|ref|ZP_07733629.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|312875747|ref|ZP_07735742.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|308166920|gb|EFO69103.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|311088739|gb|EFQ47188.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|311090835|gb|EFQ49232.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|311093537|gb|EFQ51876.1| response regulator receiver domain protein [Lactobacillus iners
           LEAF 3008A-a]
          Length = 229

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 2   VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 60  SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225


>gi|126173246|ref|YP_001049395.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999605|ref|YP_001365286.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874224|ref|YP_001553540.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974443|ref|YP_002359194.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410397|ref|ZP_07392015.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304489|ref|ZP_07584239.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996451|gb|ABN60526.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364223|gb|ABS07223.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859746|gb|ABX48280.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499578|gb|ACK47771.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350881|gb|EFM15281.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911891|gb|EFN42315.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266458|gb|ADT93311.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 237

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             Q+    +  G LS++     + +    I LT  E++++ LL+ +    L++    ++ 
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLNETEIDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN  +DG+D    + IDV I +LRKKL++       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEA 234


>gi|332662904|ref|YP_004445692.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331718|gb|AEE48819.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  I   L+  +F  +V       ++L        +I DL +  + G E
Sbjct: 3   KILIIEDEAQIAGLISQTLQEMSFKTFVALDSSTALDLFDLISPQLVITDLVMPQVSGHE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K S P+ +L+ + S ED V+GL +GADDY+ KPF   EL AR+RA++RRS  
Sbjct: 63  LCAQIRNRKRSIPILMLTALGSTEDIVKGLDNGADDYMVKPFRIPELQARVRALLRRSAS 122

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  + I    DL +N D K V      I LT  E++++E L   K     +   L  ++ 
Sbjct: 123 NTTAQISRLADLVLNHDTKEVSRNNESIKLTATEFRLLEYLMSHKGRLKARMEILEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   ++DV++  LR K+ +    K  + T  G+G++L+E
Sbjct: 183 INFDPGTNVVDVYVSYLRNKI-DKPFEKKLLHTQIGQGFILKE 224


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  + + L++E F     D G       + +  D I+LDL L  + G  
Sbjct: 6   RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+      D++ GL+ GADDY+ KP+N  E+VAR++A +RR+  
Sbjct: 66  VCRQLR-AFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L ++         G  + LT  E++++  L+ +    L++   L+HL+D 
Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHDD 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 + ID  +  LR+KL  AA G++ I +V+G GY   E   
Sbjct: 185 GRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEEPPP 229


>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
           coli EC4100B]
          Length = 260

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSSLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K L   ++  L++    V     G DG+ L K  + + I+LD+ + ++ GFE
Sbjct: 3   KILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAK-KQPELIVLDIMMPEMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  ++  P+  LS   +  DK+R L  G DDYISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRKIR-DELLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +   +L ++L   +V++ G  I L+ +EY ++ELL+L      ++E  
Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    E +   +   I K+RKK S  +    YI TVWG GY
Sbjct: 181 YERVWGYDLEGDSYTVVEHIRKIRKKFSEVSPDTEYISTVWGIGY 225


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A      L+  +F V +   G+ G+      +FD I+LDL L  + GF 
Sbjct: 3   KILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLMLPGVDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K  TP+ ++S      DK+RGL  GADDY+ KPF+  ELVAR++A + R   
Sbjct: 63  ICRRIREKK-ETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I    L ++ DA+ V ++G    L  KE+ ++  ++   N    KE  
Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      +   + V + +LR+K+        YIETVWG GY
Sbjct: 182 FERVWGLDAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGY 226


>gi|309805459|ref|ZP_07699506.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 09V1-c]
 gi|309808223|ref|ZP_07702132.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 01V1-a]
 gi|309810118|ref|ZP_07703964.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|312872201|ref|ZP_07732274.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|325911586|ref|ZP_08173994.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 143-D]
 gi|308165277|gb|EFO67513.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 09V1-c]
 gi|308168511|gb|EFO70620.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169617|gb|EFO71664.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           SPIN 2503V10-D]
 gi|311092285|gb|EFQ50656.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           LEAF 2062A-h1]
 gi|325476572|gb|EGC79730.1| putative sensory transduction protein RegX3 [Lactobacillus iners
           UPII 143-D]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 7   VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 65  SGLDLIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 123

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 124 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 184 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 230


>gi|194291209|ref|YP_002007116.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|193225044|emb|CAQ71055.1| putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  +E  L      V V   G    E     + D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRQIASGVEAGLSRAGHQVRVVHDGVYATEHLLREQHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    +TPV IL+    +EDK+ GL +GADDY+ KPF   EL AR+R ++RRS+
Sbjct: 61  TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLIKPFALPELEARVRVLLRRSQ 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H ++     +  G L ++ + + + +    + L+ +E+ ++ELL  R+   ++K    +
Sbjct: 121 -HGEAAPERDVRLGRLRLSGNDRRMFIDARPLELSPREFAVLELLLQRQGRVVSKAQLQD 179

Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL        +G D      I+V++ ++RKKL ++      I TV G GY+L+  A
Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLEDS---DVEIVTVRGFGYLLQIRA 232


>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 126/226 (55%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + +  D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPRLSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R L   +    + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR 
Sbjct: 63  VCRKLE-NRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q+ I    L +NL  +TV  +G  + LT KE+ +I LL+       ++E 
Sbjct: 122 VENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREA 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++D       + +D+ + +LRKKL +     + I+TV+G GY
Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGDL---HDVIQTVYGIGY 224


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  L  + +L L+   ++V     G  G E  +       +LD+ L ++ G E
Sbjct: 6   RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      PV +LS  +   D V+GL++GADDY+ KPF+   LVARIR++VRR R 
Sbjct: 66  LCRRIRGCS-HVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A ++   GDL V+LD+  V   G  + LT  E +++   + +    LT+   L  +
Sbjct: 125 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D     + +++DV + +LR K+     G+  +ETV G GY L
Sbjct: 185 WDYAWGGDTRVVDVHVQRLRAKI-----GRERVETVRGFGYKL 222


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 121/231 (52%), Gaps = 17/231 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G EV
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++R  RGH
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR--RGH 120

Query: 123 --------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                          + L+  G + ++++  TV V G  + +  KE+ ++E L       
Sbjct: 121 DSGAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LT+   ++ ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 181 LTRGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGY 231


>gi|146282793|ref|YP_001172946.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145570998|gb|ABP80104.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 225

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 15/226 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD+ L   +   L  E F  +    G+   +    Y+  A++LD+ L D  G E+
Sbjct: 4   LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L+ LR      PV +LSG     D++ GL+ GADDY++KP +  EL AR+RA++RRS+  
Sbjct: 64  LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH---- 177
            A S +  GDLS +       V GH + LT  E +++E L  +    + K+    H    
Sbjct: 124 AAPSQLELGDLSYSPARGVASVGGHDVSLTLSEGRILEALLAQAGEPIDKQALAQHALGR 183

Query: 178 ---LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              LYD       + +D+ +  LR+KL   A G   I  +  RGY+
Sbjct: 184 KLTLYD-------RSLDMHVSNLRRKLGPHADGSPRIVALRSRGYL 222


>gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 239

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 114/215 (53%), Gaps = 8/215 (3%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S++  L+   F+V   D G   +        DA+ILD+ +  + G  V+ ALR      P
Sbjct: 23  SLQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIP 82

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LI 127
           +C+LS  SS+ D++ GL++GADDY++KPF   ELVAR++A++RR     +        +I
Sbjct: 83  ICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFGVI 142

Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187
               LSV++  + V V    + LT +E++++  L+      L++   L  ++      + 
Sbjct: 143 HVDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADT 202

Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 203 NVVDVFVGYLRKKL-ELKGRHRLIHTVRGYGFVLR 236


>gi|326773027|ref|ZP_08232311.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505]
 gi|326637659|gb|EGE38561.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505]
          Length = 219

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E     ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVAVNDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVRDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P      V I  LR+KL    G    I+TV G GY
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGY 215


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I  +EDD A+  +++  L  E + V        G+EL +   FD ++LD+ L D  G+E
Sbjct: 3   KICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  L+      + V GL  GADDYI+KPF   EL++R+ +++RR+
Sbjct: 63  ICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRA 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  A++ I   DLS+N  A  V      + LTG EY+++ +L+  +N  +T++     +
Sbjct: 123 GKKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAI 182

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D G +      + V+I +LR+KL +       I T+ G GY L E
Sbjct: 183 WDLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKLGE 228


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR 
Sbjct: 59  YELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRV 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I  G++++    + V V G  + LT +E+ + +L          ++  L
Sbjct: 119 NKKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++        + +D+ + +LRKKL ++     YI+T++G GY L
Sbjct: 179 EKVWGFEYIGNTRAVDIMVQRLRKKLGSSG---EYIKTIYGVGYKL 221


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 12/223 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   +   L+ E F VY  + G++ I+  +    D ++LD+ + ++ GF  
Sbjct: 7   ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDEMDGFTA 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A    P+ +L+     +DKV GLQ GADDYI KPF+  ELVARI   +RR++G 
Sbjct: 67  CKEIR-AFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQG- 124

Query: 123 AQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q +  TG    +L +    + V V G  I LT KEY ++  L   +    T+E   + L
Sbjct: 125 IQQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRL 184

Query: 179 YDGRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G D  +  ++ +D  I  LR KL  A     +I+TVWG GY
Sbjct: 185 W-GMDTQQGTLRTVDTHIKTLRLKLKPA---DRFIKTVWGVGY 223


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 13/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +D++ +   +E  L      V + + G   +E  +  E D ++LD+ + ++ GF
Sbjct: 10  LKILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V   +R A+   P+ +L+ +  + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR  
Sbjct: 70  AVTERIR-AQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVS 128

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     G    ++V GDLS++ + +       RI LTG E+ ++ELL  R    ++
Sbjct: 129 SVQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPIS 188

Query: 171 KEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   L  ++  + E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 189 RLDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMFQ 242


>gi|304440456|ref|ZP_07400345.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371208|gb|EFM24825.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 130/232 (56%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDDK +   I L L+ EN+ V+  + GE  +E+      D II+DL + ++ G + 
Sbjct: 6   ILVAEDDKEIRDLIGLYLERENYRVFYAEDGEKCLEIFDREHIDLIIMDLMMPNVSGEDA 65

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  LR+ + S  P+ ILS  S   +K+ GL  GADDY++KPFN  EL+AR+ + +RR++ 
Sbjct: 66  I--LRIRENSYVPIIILSAKSQEFEKIIGLNIGADDYMTKPFNPSELMARVASQLRRTKK 123

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   S++  G+L ++ + KT+ +   +I LT  EY ++E +    N   + +     +
Sbjct: 124 YVKESASIVEIGNLKLDKNQKTIFLNNKKIDLTNIEYLILEFMMSNPNVVFSIDKIYEEV 183

Query: 179 YDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +   +EP +  K + V I ++R+K+        Y++  WG GY+  +  K++
Sbjct: 184 W---NEPAIDPKTVTVHIRRIREKIEADPQNPIYLKVKWGMGYIFVDPRKND 232


>gi|300715798|ref|YP_003740601.1| two component transcriptional regulator, winged helix family
           [Erwinia billingiae Eb661]
 gi|299061634|emb|CAX58749.1| Two component transcriptional regulator, winged helix family
           [Erwinia billingiae Eb661]
          Length = 222

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  ++   LK   + V     G + I       +D ++LDL L    GF
Sbjct: 1   MRILLVEDDAIMGEAVVEALKEARYAVDWLRSGTEAIATLAIPRYDLVLLDLRLPGNDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR      P+ I++   ++ED++RGL +GADD++  PF+    +ARIRA++RR  
Sbjct: 61  SVISSLRDKGNMLPLLIITARDALEDRLRGLDAGADDFVIAPFDMTAWLARIRAVMRRKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           GH   ++  G   + LD  + E     +G    L+ +E+ +++ L +R  T L++     
Sbjct: 121 GHCGPVLSNG--IIRLDPASHEACDVEKGEVYRLSNREFALLQALLIRPGTLLSRSELEE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +Y   +E E   ++ FI  LRKK      G   I+ V G G+ +  NA
Sbjct: 179 KIYGWGEEIESNAVEFFIHALRKKF-----GSKAIKNVRGVGWKVSGNA 222


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+I++++DDK +   + + LK+E +       G++ + ++    +   +ILD+ +  + G
Sbjct: 1   MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMTG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ ++S  +   DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKELR-KDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    S    ++  G L +N D+  V+ + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGY 224


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  IEL LK+EN+NV+     ++ +   +    D  ILD+ + +I GF
Sbjct: 13  LNILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L+ +R    + PV +L+      DK+ G   GADDYI+KPF   ELVAR++A +RR  
Sbjct: 73  TILQKIR-ETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFT 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+ H  ++   G L +N + + V +   ++ LT  E+ ++  LS  +   ++ E 
Sbjct: 132 LYNQSSKPHEDTIDFAG-LMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEE 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++  +       + V I  LR+K+ ++     +I+TVWG GY +
Sbjct: 191 LFQEIWGEKYFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTI 238


>gi|49081882|gb|AAT50341.1| PA2479 [synthetic construct]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   L +   FD ++LDLGL D  G 
Sbjct: 1   MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   +  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  + RRS 
Sbjct: 61  RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL NA      ++TV G GY L
Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S  +C L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAHQSPAIC-LTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219


>gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC
           33200]
 gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC
           33200]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 117/203 (57%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +   ++S N+ V     G D +EL +   +D IILD+ +  + G 
Sbjct: 1   MKILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + ++D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+ A+   V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNV-AEQELVSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             DE    ++ ++I  LR+KL +
Sbjct: 180 DDDETSEDVVWIYISYLRQKLQS 202


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  L  +I   L+ E + V   + G+  +EL +    D ++LD+ L +I G EV
Sbjct: 4   VLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAE-ENPDIVVLDILLPEIDGLEV 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  + S P+ +L+  +   D++ GL+ GADDY++KPF+  EL+ARI+A++RR    
Sbjct: 63  CRRLR-QRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +   +  +V+GDL ++     V+  G  I LT +E+ ++  L + K    + 
Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181

Query: 172 EMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L  ++ G DE  +V+ + V I  LR+K+ +       IETV G GY
Sbjct: 182 ERLLEEVW-GYDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGY 229


>gi|209549806|ref|YP_002281723.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535562|gb|ACI55497.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA ++   L         T    D +EL +   +DAI+LD  L D  G 
Sbjct: 1   MRILLIEDERELAKALSAALGKHGIVTDHTMHLADAVELTRQNLYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR     TP+ +L+ ++  +++V GL  G+DDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  SFIPQLRRTGKDTPIIVLTALNEPKERVEGLDLGSDDYLGKPFLVEELMARLRAVLRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y+
Sbjct: 121 NLAELKITAGRMVIDPLHLSVTVDDAPLDLPRRELLVLAALAKRKEKTVLRATLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   +D  I +LR++L+  AG +  I  + G GY+L+E
Sbjct: 181 YEEEIQSNALDAHISRLRRRLAE-AGAEVSIHNIRGVGYLLKE 222


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  +   L+   +    ++ GED  E      F+ I+LD+ L  I GF+V
Sbjct: 6   ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  +I    P+ +L+      DK+ G + G DDY+ KPF+  EL  RIRA+++R R
Sbjct: 66  CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  + +G L V++    V + G  + LT  E++++  L  RK    ++EM L+ 
Sbjct: 126 RQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D       + ID  + +LR+KL    G K  I+TV G GY   E+ 
Sbjct: 186 VWDVDRTINTRTIDTHVTRLREKLGT-VGAK--IKTVRGLGYKFEEDG 230


>gi|325264690|ref|ZP_08131419.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029982|gb|EGB91268.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++I+DD ++ + +E +L  E   V     G + +   +    D I+LDL L  + G EV
Sbjct: 7   IMIIDDDVSIGNMLEEVLIREGCRVSRAYSGTEALLFLESNRPDLILLDLMLPGLNGEEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++      PV ++S  + + DKV  L  GA DYI+KPF+ +EL+ARI   +R + G 
Sbjct: 67  LPEIK----GIPVIVISAKAEVSDKVELLLGGAADYITKPFDIQELLARIAVQLRNASGA 122

Query: 123 AQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q  ++   +L+++L A TV V G  +HLT  E+ +++LL    +  + K + L  + + 
Sbjct: 123 GQPPVLNWEELTMDLAAHTVSVGGREVHLTKTEFAILKLLMQNPSQVIPKSVMLERISED 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     + V I  LR+KL + AG K+YIE VWG G+ L+E
Sbjct: 183 TPDCVESSLKVHISNLRRKLRD-AGEKDYIEAVWGIGFKLKE 223


>gi|313107372|ref|ZP_07793563.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880065|gb|EFQ38659.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   L +   FD ++LDLGL D  G 
Sbjct: 1   MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   +  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  + RRS 
Sbjct: 61  RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQTGADDYLLKPFDLRELGARLHTLQRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL NA      ++TV G GY L
Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216


>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 253

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++A+A  +   L+ E +   V   G  G+E  +    D +ILD+ L  + GF++
Sbjct: 19  ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGFDL 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R  R    +TPV  LS     ED+V GL++G DDY+ KPF+  E + R+  ++RR RG 
Sbjct: 79  CRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRR-RGW 137

Query: 122 ---HAQSLIVT------GDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTK 171
              H  S   +      G  +V+  + T  +   R   L+ +E ++++LLS R+   +++
Sbjct: 138 GGEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  L+ ++     P  + +D F+ +LR+          Y  TVWG GY
Sbjct: 198 DDILDAVWGDDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGY 245


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +   K     D ++LD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R  ++  P+ +LS  ++  DK++GL +GADDY++KPFN  E++ARI++++RRS
Sbjct: 61  NQVVKEVR-KEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   Q+ +  G L +  ++  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 NYMTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++        K + V +  LR K+  A GG+  I+TVWG GY + E
Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGE 228


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-RIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   IDV + +LR K+      K  I T+ G GY
Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEGYELK-LIHTIRGLGY 217


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  +      ++  +ILD+ L  + G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K STP+ +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   GH I LT KEY+++  L+   +   ++E 
Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  ++     I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKL 234


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58
           RIL+++DD +LA  I +ML+SE+   Y   L  DG + L  F+E   D ++LDL L  + 
Sbjct: 4   RILVVDDDASLAEMIGIMLESES---YTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R ++   P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR
Sbjct: 61  GVEICRLIR-SESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ +
Sbjct: 120 TNPGAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 180 WGYQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   ++L L+ E ++V     GE+GIE  K   +D I+LDL +    G EV
Sbjct: 4   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+      +KV  L  GADDY++KPF  EEL ARIR  +R     
Sbjct: 64  CKIIRKTS-NIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 122

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  D L ++L   ++      I LT  EY +   L L K   +++E  LN ++  
Sbjct: 123 TNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E KI+DV+I  LRKK+        +I TV G GYVL++
Sbjct: 183 DYMGEEKIVDVYINALRKKIDYDEN--KFIHTVRGFGYVLKK 222


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G+ G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKINGLE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R +     PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G +G ++   Y+ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V  +++ LT KE++++ +++       ++   
Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D++ LA  +   L+ E+F V V   G D + L +  + D ++LDLGL  + G E
Sbjct: 19  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  S+  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRELRTFSDAY-VVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 137

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                      G      V G L +++  + V +    + LT  E+ ++ +LS R     
Sbjct: 138 APVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 197

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +  ++         ++DV +  LR+KL +      Y+ TV G GY
Sbjct: 198 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGY 247


>gi|254500884|ref|ZP_05113035.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222436955|gb|EEE43634.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 112/205 (54%), Gaps = 4/205 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L+ED+  LA  I   L+    +V V   G+D     +    D +ILD+ L    G 
Sbjct: 1   MRIALVEDNVNLAKGIAYQLRDAGHSVDVLHHGDDADTFLRQETGDLVILDINLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR      PV +L+  S  +D+V+GL +GADDY+ KPF  EEL ARIRA+ RR+ 
Sbjct: 61  DLLADLRERSDPRPVILLTARSETQDRVKGLDAGADDYLVKPFEMEELAARIRALGRRNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHL--TGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + SL+  G L    DA ++++    + L    +E  ++  L      TL+K   L+ L
Sbjct: 121 AVSPSLVNVGPL--KFDAGSMQLFDGDVALEVPRRELSLLSALIQANGRTLSKASLLDQL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203
           Y    E + K+I+V++ +LRK+LS+
Sbjct: 179 YGAGSETDEKVIEVYVSRLRKRLSS 203


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S  +C L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 82  WQVLRALRTAHQSPAIC-LTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYMVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219


>gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +   +D +I+D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDIPLLHTVRGAGYMLKAPDK 226


>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K++A ++    K E + V     GE+ +E  K ++ D +ILD+ +  + G+E
Sbjct: 4   KILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLTGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +    + +L+  + I DKV GL+ GADDY++KPF+  ELVAR +A+VRR   
Sbjct: 64  VCRKLENRR-GMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A   I  G + VNL  +T+ V    + LT KE+ +I LL        T+E  L+ 
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +D+ + +LRKK+  A      ++TV+G GY
Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEAE--PYLLQTVYGVGY 222


>gi|91783509|ref|YP_558715.1| osmolarity response regulator [Burkholderia xenovorans LB400]
 gi|170692385|ref|ZP_02883548.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187923869|ref|YP_001895511.1| osmolarity response regulator [Burkholderia phytofirmans PsJN]
 gi|209520706|ref|ZP_03269456.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295676509|ref|YP_003605033.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|296157818|ref|ZP_06840652.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307729628|ref|YP_003906852.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526056|ref|YP_004228209.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|91687463|gb|ABE30663.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170142815|gb|EDT10980.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187715063|gb|ACD16287.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|209498868|gb|EDZ98973.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436352|gb|ADG15522.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295892064|gb|EFG71848.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307584163|gb|ADN57561.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383058|gb|ADX55149.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 110/209 (52%), Gaps = 12/209 (5%)

Query: 23  ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+   
Sbjct: 32  QGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAKG 91

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSV 134
              D++ GL+ GADDY+ KPFN  ELVARI A++RR        +      +   G+ ++
Sbjct: 92  EDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEFAL 151

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV--KIIDV 192
           NL  +T+   G  I LT  E+ ++++ +      L++E  +  L  GR E EV  + +DV
Sbjct: 152 NLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLM-ELARGR-EYEVFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            I +LRK +    G   +I+TVWG GYV 
Sbjct: 210 QISRLRKLIEPDPGSPRFIQTVWGLGYVF 238


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M+IL+++D+ ++ + I + L+ E + V       DG E+ + +    D +ILD+ L D  
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLT---AADGREVLERWNEGPDVLILDVMLPDTD 57

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR
Sbjct: 58  GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117

Query: 119 SRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +      +  +I  G++++    + V V    I LT +E+ + +L          ++  
Sbjct: 118 VKKKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDEL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 178 LEKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 9/225 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  + R
Sbjct: 1   MVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLSICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR      
Sbjct: 61  RLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVREVP 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  +N 
Sbjct: 121 GAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKLMN- 179

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 180 LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVF 224


>gi|295090361|emb|CBK76468.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           ++ILL+EDD  L  SI+  L    ++V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 2   IKILLMEDDLDLCQSIQQELMKNGYSVDCCNDGEIAMLYALNTDYGYDLAIVDRMLPVID 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++A+R   I  PV I++GMS+++D+V GL  GADDY+ KPF+  EL+AR+RA+ RR
Sbjct: 62  GLTIIKAMRRKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELMARVRALTRR 121

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   ++  ++  DL ++   + +   G  + LT +E +++ +L  +  T  ++E  +  
Sbjct: 122 PQQIQETEALSYADLHLDYPNRKIVCNGQDLVLTAREAELLSVLMKQPKTAFSREQLVLK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    + E   +D +I  LRK+L         I+T++G GY L ++
Sbjct: 182 VWGSNADIEPGNVDNYISFLRKRLRELHSSCE-IKTIYGAGYRLEKS 227


>gi|300692435|ref|YP_003753430.1| response regulator, cheY family [Ralstonia solanacearum PSI07]
 gi|299079495|emb|CBJ52171.1| putative response regulator, CheY family [Ralstonia solanacearum
           PSI07]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +   L+   + V     G              +D +ILD+GL  +
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAGYAVDQAADGAAADAALSAQTAQTYDLLILDVGLPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VR
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +L+  G L+ +   +   ++   + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIRDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    +E     I+V++ +LRKK+         I TV G GY L
Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221


>gi|307245489|ref|ZP_07527576.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306853548|gb|EFM85766.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F ++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 H--AQSLIVT---------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           +  +   ++T               GD+ ++   +    +G  + LTG E+ ++++L   
Sbjct: 122 NILSNPDVITYSNQSPKENSKQLSFGDVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GADTIRTVHGVGYAF 235


>gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 254

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   I+  L+   + + +   G +G E      F A+ILD+ L  + GFE
Sbjct: 21  RLLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVMLPGMDGFE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R A  + PV +L+      D++ GL+ GADDY+ K F+  EL+AR+RA+ RRS  
Sbjct: 81  VLKQIRRAS-NVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             ++        IV  DL VN  ++T  +    + LT  EY ++  L+  K    ++E  
Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ + +   +   + IDV I  LRKKL +      +I TV   GY+L   A+
Sbjct: 200 LDEIAERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYMLMNPAE 251


>gi|312198458|ref|YP_004018519.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229794|gb|ADP82649.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 8/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  ++  I L L  E F V V   G  G+   +     A++LD+ L  + G +V
Sbjct: 1   MLVVEDEPHISDLIRLYLTREGFGVEVRQDGAAGLTAARELAPVALVLDVRLPGLDGRDV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LRALR  +  TPV  ++      D++ GL+ GADDY+ KPF+  ELVAR+RA++RR+   
Sbjct: 61  LRALRAEENWTPVLFVTARDDEVDRILGLELGADDYLVKPFSPRELVARLRAVLRRAGPQ 120

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A       +  G + ++LD + V   G  + LT  E+ ++  L  R     T+E  L+ +
Sbjct: 121 AAQPATRTLRAGAVELDLDRRQVAAAGVPVALTATEFDLLAALLARPGLVYTRERLLSQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +        + +DV + ++R KL    G  + I TV G GY
Sbjct: 181 WGYHAAAGTRTVDVHVAQVRAKL----GDVSPIRTVRGVGY 217


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 131/223 (58%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++    T    +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 221


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  +E+ LK+EN+N++    G+D ++     + D  ILD+ L D+ GF +
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVDGFSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + PV +L+      DK+ GL  GADDYI+KPF   EL+AR++A +RR   +
Sbjct: 65  CRQIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S       +I    L ++++     +   ++ LT  E+ ++ +L   +   ++ E   
Sbjct: 124 NSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++ D         + V I  LR+K+ ++     YI+TVWG GY
Sbjct: 184 NEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGY 228


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 18  KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 78  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             +  +     GDL +++    + V+G  + LT  E++++  L+        +    E  
Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L + ++G +    + ID  +  LR KL +      ++ TV G GY     A+ +  +
Sbjct: 197 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQSDKAD 249


>gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +   +  ++K   +       G + +   +  ++D ++LDL L  I G 
Sbjct: 5   INILVVEDDNDINQMLCKIIKKSKYYAIPAYSGTEALLYLENKQWDLVLLDLMLPGISGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVL+ +R    STPV I+S  +  + K+  L+ GADDYISKPF+ EE+ ARI A++R   
Sbjct: 65  EVLKQVR-EHSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQ 123

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R +  +   +V  D+ +N+D++ V V    + LT +E+++++LL        +K   
Sbjct: 124 KSEREKNTSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++ +   +   ++V +  LR KL+       YIET+WG GY L+
Sbjct: 184 FETVWEDKFHGDENTVNVHMSNLRNKLAQNNATDTYIETIWGIGYRLK 231


>gi|119715476|ref|YP_922441.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536137|gb|ABL80754.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +A  +   L+ E ++V   D G+  ++       + +ILDLGL DI G E
Sbjct: 8   RVLVVEDEEDIAFPLVRTLEREGYDVSWVDSGQKALDTMATAP-EVVILDLGLPDIDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R  R A     + I++  +   D+V GL  GADDY++KPF   EL AR+RA++RR S 
Sbjct: 67  VCRRAREAGFEGAIMIVTARAGELDRVVGLDYGADDYLAKPFGLAELQARVRALLRRTSS 126

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +     D L +++DA+ V      + LTGKE++++ +L+  ++  +++   +  ++
Sbjct: 127 GSATAEGAKPDGLRIDVDARRVYAGDEEVPLTGKEFEVLNILAANRDKVVSRGRLMADVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D       K +DV I +LR+KL +  G  + +  V G G+ L     D
Sbjct: 187 DENWYGSTKTLDVTIGRLRQKLES-VGVTDRVVAVRGVGFRLEGGTPD 233


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L    F V     G + + +    + D I+LD+ +  + GF+ 
Sbjct: 6   ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLDGFQF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++  R  + +TPV +L+   +  DKV GL+ GADDY++KPF   ELVAR+RA++RRS   
Sbjct: 66  MQTFR-KRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSPD 124

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A    +L+  GDL++N   + V V    + LT  E+ ++  L        ++E  L  L 
Sbjct: 125 ALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERLQ 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  LRKKL        Y+ETV+G GY
Sbjct: 185 GNDYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGY 224


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LD+ L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR AK S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKQLR-AKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      ++  G + ++++   V V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + K +DV + +LR K+    G   ++ TV G GY L E
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229


>gi|119899090|ref|YP_934303.1| two component system transcriptional regulatory protein [Azoarcus
           sp. BH72]
 gi|119671503|emb|CAL95416.1| two component system transcriptional regulatory protein [Azoarcus
           sp. BH72]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +   L+ EN+ V+  D G+  +      + D I+LDLGL D+ G EV
Sbjct: 5   VLVVEDEPQIRRLVRNALEGENYRVFTVDSGKRSLIEAGTRKADLIVLDLGLPDLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R      PV ILS     +DK+R L  GADDY++KPF   EL+AR+RA+VRR   H
Sbjct: 65  LRGIREWS-HVPVLILSARGEEDDKIRALDEGADDYLAKPFGVGELLARVRALVRRHVKH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             S   +  G++  +   +TV   G  +HLT  EY+++ +L+      LT    +  ++ 
Sbjct: 124 EDSSGRLNFGEVEADFVRRTVVRNGEAVHLTKIEYRLLTVLAANAGKVLTHNHLMREVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++ +LR+KL        +  T  G GY
Sbjct: 184 PAYVDSNHYLRIYVGRLRQKLEADPAQPLHFLTETGVGY 222


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + + LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR SR
Sbjct: 75  ICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134

Query: 121 ----GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +Q + V   G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 195 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241


>gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
 gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
 gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51]
 gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio
           cholerae TM 11079-80]
 gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LTPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 224


>gi|329851780|ref|ZP_08266461.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328839629|gb|EGF89202.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 219

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L  ++   L   +   +V  L +  +       +D I+LDLGL D  G 
Sbjct: 1   MRLLLIEDDAMLGSAVRDGLTPHHAVDWVRTLADAALARSTT-AYDLILLDLGLPDGSGL 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  LR +  STPV IL+   ++  ++ GL SGADDY+ KPF+ +EL+AR RA++RR+ 
Sbjct: 60  AWLTQLRRSGDSTPVLILTARDAVGHRIEGLDSGADDYLVKPFDLDELIARCRALLRRAS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H     V   +  +  A+ +      +HL+ +E  + E L   +   ++K      LYD
Sbjct: 120 EHVALREVAPGVDYDPQARRILYHHQPVHLSAREMAVFERLVAARGGIVSKGQIEESLYD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++V I  +R KLS     ++ I+TV G GY L
Sbjct: 180 WSRDIDSNTVEVHISSIRHKLS-----RDVIQTVRGMGYRL 215


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 82  WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241


>gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED       ++  L+   F V VT+ G DG+       +  +ILD+ L  + G+
Sbjct: 1   MRILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR AK + PV  L+   +++D+++GL+ GA+DY+ KPF+  EL+AR++  ++ ++
Sbjct: 61  EILKILRTAK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I   DL ++L    VE  G +I LT +E+ ++    L  +  L + +  + ++ 
Sbjct: 120 -PASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  IIDV I +LRKK+ +    K  IET+ G GY L
Sbjct: 179 IDFESDTNIIDVAIRRLRKKIDDEFDVK-LIETIRGMGYRL 218


>gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida
           FTG]
 gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida
           FTG]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+ +    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDISMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK++      N+I+T+ G GY ++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP----NFIQTIRGVGYFVQKD 224


>gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627]
 gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-KTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  ++ V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   +DV I +LR K+ +    K  I T+ G GY L
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFNEK-LIATIRGMGYSL 218


>gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 14/226 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A  +   L  E F   +   G DG+   + ++ D ++LD  L D  G +
Sbjct: 5   RILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +  A+ + P+ +L+  S I DK+ GL+ GADDYI+KPF+  E+V RIR I+RR   
Sbjct: 65  ICKQV-TAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +  A S+I   D+ V+   + V  +G  + LT KE+ ++  L   +    T+   
Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++ G D P +++ +D  I +LRKKL  A    + I TV+G GY
Sbjct: 184 LESVW-GYDFPGDMRTVDTHIQRLRKKLDAA----DLITTVFGIGY 224


>gi|118444074|ref|YP_877404.1| two-component response regulator [Clostridium novyi NT]
 gi|118134530|gb|ABK61574.1| two-component response regulator [Clostridium novyi NT]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   IE+ L+ EN+ V     G D + +        IILD  L DI GF
Sbjct: 1   MKILVVDDEISILQLIEMTLELENYEVMTAKTGLDALNILSKENIQLIILDAMLPDINGF 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++   ++  IS  P+ +L+  + I DK+ GLQ GADDYI+KPFN  EL+ RI+   +R 
Sbjct: 61  NLIP--KIKNISDIPIIMLTAKNDINDKILGLQLGADDYITKPFNSTELILRIKIASKRV 118

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    + ++ I+ G L +    + + +    + LT KE++++  L   K    ++E  L+
Sbjct: 119 KKDIVNEKNEIILGSLRILKKERKLIINSTEVTLTYKEFEVLSYLCENKEKVFSREELLS 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E   + +D+ I +LRKKL      +NYI+T++  GY
Sbjct: 179 KVWGYDFEGTTRAVDILIQRLRKKLGKC---QNYIKTLYKAGY 218


>gi|32035357|ref|ZP_00135346.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208111|ref|YP_001053336.1| transcriptional regulatory protein CpxR [Actinobacillus
           pleuropneumoniae L20]
 gi|126096903|gb|ABN73731.1| transcriptional regulatory protein CpxR [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F ++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
           +  S   +I   + S   ++K +   G  +H              LTG E+ ++++L   
Sbjct: 122 NILSNPDVITYSNQSPEKNSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  ++  L+ E ++V V   GE+G+        D I+LD  L  + G EV
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R      + P+ +L+      D+VRGL +GADDY++KPF+  EL ARIRA++RR R
Sbjct: 65  CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +   D+ ++  A  V   G  +HL   E+++++          ++E  L+ ++
Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV + +LRK L N  G  N I TV   GY L  N
Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEGTVNPIRTVRSAGYSLDLN 228


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58
           RIL+++DD +LA  I +ML+SE+   Y   L  DG + L  F+E   D ++LDL L  + 
Sbjct: 17  RILVVDDDASLAEMIGIMLESES---YTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLD 73

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R ++   P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR
Sbjct: 74  GVEICRLIR-SESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 132

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ +
Sbjct: 133 TNPGAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 193 WGYQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 239


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+ +D+  +   I   L  E++ V   + GE  +++  FY   E   IILD+ +  + 
Sbjct: 5   KILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDM--FYMDSEISLIILDVMMPKVD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF VL+ +R    S PV +L+      D + G + GAD+YI+KPF+ + L+AR+ A++RR
Sbjct: 63  GFAVLKEIRETS-SIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRR 121

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S   +  + ++  G + +++DA      G+ + L+ KE++++      +   L++E  LN
Sbjct: 122 STDDSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++D     + + ID  + KLR KL +     NYI+T+WG GY    +AK
Sbjct: 182 HVWDYDYFGDARTIDTHVKKLRSKLDDKG---NYIKTIWGMGYKFEVDAK 228


>gi|258620439|ref|ZP_05715477.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
 gi|258587318|gb|EEW12029.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM573]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F++   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVT-DQIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LAPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERLDGKARIKTLRGRGYLM 224


>gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A  +   L+ E   V     G D +       +D +ILD  L  + G 
Sbjct: 1   MRILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAVGETYDVVILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A    PV  L+ +  ++D+V GL +G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  AIIKEIRSAGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPH 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    L V GDL ++L ++ V   G  I L  +E++++E+L   +   +T+ M L  +
Sbjct: 121 TIGEETRLKV-GDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +P+  +++  I +LR K+         I T+ G GY + + A
Sbjct: 180 WSFHFDPKTSVVETHISRLRAKIDKPY-DTELIHTIRGCGYTVNDGA 225


>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V     G D ++  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLR 231


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++  L+     +  +  G D +E  K  ++D I+LDL L  I GFEV
Sbjct: 4   ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ ILS       K++GL+ GADDYI+KPFN  EL AR+ AI+RR    
Sbjct: 64  CKKVRETS-DVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEKS 122

Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +     GD+++N   + V      I+LT KE+ ++ LL    N   ++E  L  ++ 
Sbjct: 123 KKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +DV I KLR+K+ + +    +I T WG GY  +
Sbjct: 183 YEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYFQ 224


>gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 18/226 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   + +MLK++N +      G + +E+ K  + D I+LD+ +  + G   
Sbjct: 6   VLIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVMMPRMDGMMA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R   ++ P+ ILS      DK+ GL  GADDYI+KPFN   L+A+IR+ +RR    
Sbjct: 66  CMKIR-ESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124

Query: 119 -SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            S  H   SLI   D+ +N+D  TV++    I+LT  E++++  L+  K+  L+ +    
Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184

Query: 177 HLYDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++   +EP +   + + V I +LR+KL      K+YI+TVWG GY
Sbjct: 185 NVW---EEPYMEFDRTVTVHIRRLRQKLK-----KDYIKTVWGVGY 222


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +A  IEL LK+EN+NV+    G+D +   +    D  ILD+ L DI GFE+
Sbjct: 6   VLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDIDGFEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R+   + PV +L+   S  DK+ GL  GADDYI KPF   EL+AR++A +RR    
Sbjct: 66  LKQIRLTH-NFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFTRY 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  + +  +    L +N            I LT  E+ ++ +L+  +   ++ E   
Sbjct: 125 NDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVISSENLF 184

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  +  +     + V I  LR+KL    G K  I+TVWG GY + E
Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|207728005|ref|YP_002256399.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207742406|ref|YP_002258798.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|300705088|ref|YP_003746691.1| response regulator, chey family [Ralstonia solanacearum CFBP2957]
 gi|206591249|emb|CAQ56861.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593796|emb|CAQ60723.1| response regulator protein [Ralstonia solanacearum IPO1609]
 gi|299072752|emb|CBJ44105.1| putative response regulator, CheY family [Ralstonia solanacearum
           CFBP2957]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRIL+ EDD  LA  +   L+   + V     G              +D +ILD+GL  +
Sbjct: 1   MRILIAEDDATLADGLTRSLRQAGYAVDRAADGAAADAALSAQTAQTYDLLILDVGLPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VR
Sbjct: 61  SGLEVLKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++H
Sbjct: 121 RGTGGGATLVRHGPLAFDQVGRIAYIHDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    +E     I+V++ +LRKK+         I TV G GY L
Sbjct: 181 LCGWGEEVSNNAIEVYVHRLRKKIEVDG---IRIATVRGLGYCL 221


>gi|171780277|ref|ZP_02921181.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281625|gb|EDT47060.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/228 (38%), Positives = 134/228 (58%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E ++V V   G  G++     +FD I+LDL L D+ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR+ K  T + +++   SI D V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 64  ITRRLRLEK-DTSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDA 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKT-VEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            S+   +     G L + L+ +    V+G   I LT +EY ++ +L    N  +T+E  L
Sbjct: 123 NSKQDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++    + E  ++DV+I  LR K+ +  G ++YI+TV G GY++RE
Sbjct: 183 ASVWRYDTDIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYIIRE 229


>gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|332880617|ref|ZP_08448291.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332681605|gb|EGJ54528.1| response regulator receiver domain protein [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L +++   L  E F V   +     +E    Y++D I+LD+ L    G 
Sbjct: 1   MKILLIEDEEELRNTVREYLTREKFIVECAEDYASAMEKVNDYDYDCILLDIMLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  L+  +    V I+S   SIEDKV GL  GADDY++KPF+  EL AR+++++RR +
Sbjct: 61  SVLAHLKRMRKQESVIIISAKDSIEDKVEGLNLGADDYLAKPFHLAELNARVKSLLRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + IV G+L++  D + V V G+ ++L  KE+ ++       N  + +      ++ 
Sbjct: 121 AGGDTSIVLGNLTLVPDTRKVTVDGNELNLNRKEFDLLYYFISNPNRLINRMALAESVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D+ + +  I   +  LRKK+  AAG +  I+ V+G GY L
Sbjct: 181 DHIDQADSLDFIYSQVKNLRKKMK-AAGTQAEIKAVYGFGYKL 222


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG-S 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           H Q         +I   DL +    + V V    + LT KE++++ L++       ++  
Sbjct: 122 HVQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 182 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
 gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR   
Sbjct: 63  ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 217


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD A++  + ++L++E F  V VTD G   +   +  + D ++LDL L  + G 
Sbjct: 4   KILVVDDDPAISEMLTIVLEAEGFEAVPVTD-GGAAVGAFRDQDPDLVLLDLMLPGMSGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  + + P+ +L+  +   D V GL+SGADDYI+KPF   EL+ARIRA +R++ 
Sbjct: 63  DICKEIR-KESNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL V++    V   G  I LT  E+ ++  L+ +     T+E  L  ++ 
Sbjct: 122 EEPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R+  + ++++V + +LR K+ +       I TV G GY
Sbjct: 182 YRNASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGY 220


>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 21  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 81  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172
           ++  +I   +  +LS N   L+ +T E  + G  + LT  E+ ++  LLS   N    +E
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F     D         I V I  LR+KL++ +    YI+T+WG GY
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 246


>gi|226199479|ref|ZP_03795037.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225928555|gb|EEH24584.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 218

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 104/181 (57%), Gaps = 3/181 (1%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           FD +ILDLGL  + G EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF 
Sbjct: 16  FDLLILDLGLPRMSGLEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFA 75

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
             EL AR+RA+ RR  G   +++  G LS +   +        + L+ +E  ++E+L  R
Sbjct: 76  LNELEARVRALTRRGAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQR 135

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++KE  ++HL +  +E     I+V++ +LRKK+  +      I TV G GY L + 
Sbjct: 136 IGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKA 192

Query: 225 A 225
           A
Sbjct: 193 A 193


>gi|171777476|ref|ZP_02919212.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283254|gb|EDT48678.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+K +A +I+ +L++  + V +   GE  ++      +D ++LD+ L    G  VL+
Sbjct: 1   MVEDEKGIAEAIQAILENHRYEVDLVFDGESALDYILTGLYDLVLLDIMLPKFDGVSVLK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R   +  P+  L+  S +ED+V GL  GADDY+ KPF  EEL+ARIR   R+S     
Sbjct: 61  RVRQMGMEVPIIFLTAKSQLEDRVLGLDLGADDYMIKPFEAEELLARIRLRTRQSSITQV 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           + +  G+L +NLD + + V    + L+ KE+ ++E         + K   +  ++   DE
Sbjct: 121 NHLKFGNLILNLDTRELSVAEREVKLSNKEFLLMETFLRNSKKIIPKNQLILKVWGPLDE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   ++VFI  LRKKL   A     I+T  G GY L +  K+
Sbjct: 181 SDYNQLEVFISFLRKKLRFLAASA-VIKTTKGVGYSLEDGEKE 222


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K L   ++  L    + V     G DG+ L K  + D I+LD+ + ++ GFE
Sbjct: 3   KILIIDDEKELVALLQDELTERGYQVLAAHNGADGVTLSK-KQPDLIVLDIMMPEMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  ++  P+  LS   +  DK+R L  G DDYISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRKIR-DEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +   +LS++L   +V++ G  I L+ +E  ++ELL+L      ++E  
Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    + +   +   I K+RKK +  +    YI TVWG GY
Sbjct: 181 YERVWGYDSDGDSYTVVEHIRKIRKKFALVSADTEYISTVWGIGY 225


>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +  +++    +E + V++   G  G+  CK      ++LDL L  + G EV
Sbjct: 4   ILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLPGLSGREV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + ++     TPV ILS +S + DKV  L++GADDY++KPF+  EL+AR++A +RR+R  
Sbjct: 64  CKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTRRT 123

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q   +  G+++V+     V   G  + LT  E++++          + ++  L+ ++  
Sbjct: 124 VQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +D  I KLR+KL        +  TV G GY
Sbjct: 184 NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGY 221


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE+G+ L    + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLN-DQIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-ETWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRRTQSS 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I   D+      +    QG  I LT  E+ ++         TLTKE    
Sbjct: 122 NNKAAKNSDCIEYQDIQAFPGKQEAYCQGELIDLTTTEFALLAHFIQHPGDTLTKEALSL 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +   R     + ID+ +  LRKKL   A GK+ I+T+ GRGY+L E
Sbjct: 182 DVLGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTIRGRGYLLVE 228


>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
 gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L++E + V    LG + + L   +E D I+LDLGL D+ G E+
Sbjct: 8   ILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLPDMDGEEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LRAL +  +   V +LS  +   DKV  L  GA DY++KPF+  EL ARIR  +RR  G 
Sbjct: 68  LRALPMW-VRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRRGGGD 126

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +S     V G+L ++++A T  +    +HLT  E++++  L+      +T    L  ++
Sbjct: 127 GESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHGQLLKAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + + +   + + I KLR+K+        Y+ T  G GY
Sbjct: 187 GKQSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGY 226


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V   + G +G+ + +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  G++ +N+    V V+   + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K         YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGY 227


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 117/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  +   +   L  E F V V    EDG  L +       + I+LDL +    
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMV---AEDGKALNRILLRETVELIVLDLMMPGED 66

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 67  GLSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRR 126

Query: 119 SRGHAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     +GD         + +L  + ++  G  + LT  E+ M++ L       L+
Sbjct: 127 RPPQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLS 186

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  L  GR+ EP  + +DV + +LRK +   A    YI+TVWG GYV 
Sbjct: 187 REK-LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G  G E  +   +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS- 119

Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G       TG     DL ++ + +    QG  I L+ KE Q+++         +T    +
Sbjct: 120 GSQTYETTTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIM 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +L+   ++P   +I   I  LR+K+         I TV+G+GY
Sbjct: 180 ENLWQEEEQPSSNVIAALIRLLRRKI-EVGRETALIHTVYGKGY 222


>gi|15597675|ref|NP_251169.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107101924|ref|ZP_01365842.1| hypothetical protein PaerPA_01002970 [Pseudomonas aeruginosa PACS2]
 gi|116050423|ref|YP_790758.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891541|ref|YP_002440408.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235479|ref|ZP_04928802.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719]
 gi|254240911|ref|ZP_04934233.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192]
 gi|296389103|ref|ZP_06878578.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|9948530|gb|AAG05867.1|AE004675_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585644|gb|ABJ11659.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167410|gb|EAZ52921.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719]
 gi|126194289|gb|EAZ58352.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192]
 gi|218771767|emb|CAW27544.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   L +   FD ++LDLGL D  G 
Sbjct: 1   MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   +  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  + RRS 
Sbjct: 61  RLLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL NA      ++TV G GY L
Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216


>gi|327481131|gb|AEA84441.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 225

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 15/226 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD+ L   +   L  E F  +    G+   +    Y+  A++LD+ L D  G E+
Sbjct: 4   LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L+ LR      PV +LSG     D++ GL+ GADDY++KP +  EL AR+RA++RRS+  
Sbjct: 64  LKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSQPA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH---- 177
            A S +  GDLS +       V GH + LT  E +++E L  +    + K+    H    
Sbjct: 124 AAPSQLELGDLSYSPARGIASVGGHDVSLTLSEGRILEALLAQAGEPIDKQALAQHALGR 183

Query: 178 ---LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              LYD       + +D+ +  LR+KL   A G   I  +  RGY+
Sbjct: 184 KLTLYD-------RSLDMHVSNLRRKLGPHADGSPRIVALRSRGYL 222


>gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD A+   ++  L +E   V     G    E       D  I+D  L  + G +
Sbjct: 3   QVLIVDDDPAILEILQAYLVAEGHTVLSASDGFGARE--GLPRADLAIIDWMLPGVSGMD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R  R A +  P+ +L+     EDK+RGL  G DDY+ KPF+  E++AR+RA++RR   
Sbjct: 61  LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRV-- 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDLS++L + T  + G  + L+  E+ ++  L+       T+E  L  ++  
Sbjct: 119 GVREEVSIGDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWGS 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++DV I  LRKKL + +    +IETV G GY  RE 
Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRFREE 221


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224


>gi|171060117|ref|YP_001792466.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777562|gb|ACB35701.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 213

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 12/222 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +++  L++   +VY   L    +   +   FD  ++DL L D  G 
Sbjct: 1   MRVLLLEDDIDLGQAVDDHLEAAGHSVYWCKL----VSQVRNVTFDLALVDLNLPDGDGV 56

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R  R A   TPV +L+    + D++RGLQ+GADDY+ KPF+ +E++ARI A++RRS 
Sbjct: 57  DLVRYWRQAGRLTPVIMLTARDQVSDRIRGLQAGADDYLVKPFDLDEMLARIDAVLRRSS 116

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLNHLY 179
              +  +   D  V+L+ + V  QG  + LT  E+ ++  L+ R      + E+ +    
Sbjct: 117 PSPR--LQVHDNVVDLEQRQVLHQGQPLDLTAMEWAVLRCLASRPGRIFNRGEIDVALAA 174

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG+   +   ++V + +LRKKL     G + I T  G GY L
Sbjct: 175 DGQPSSDSNTLEVIVSRLRKKL-----GADVISTHRGMGYRL 211


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAF 235


>gi|319790209|ref|YP_004151842.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317114711|gb|ADU97201.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 212

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 16/222 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+I L+EDD ++ + ++ +L SE F+V      E  +     Y  EFD +ILD+ L    
Sbjct: 1   MKIALVEDDLSILNLLKRVLLSEGFSVREFSTAEAFMNAVFEYGEEFDLVILDVMLPGTD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G      LR    S P+ +L+ +S  E+KV+GL SGADDY++KPF  +EL+ARIRA++RR
Sbjct: 61  GVTACSFLRERGFSAPILMLTALSEEEEKVKGLDSGADDYLTKPFGIKELLARIRALLRR 120

Query: 119 S-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S RG       T +       + V V+G  + LT KE +++++L   +   ++KE  +  
Sbjct: 121 SERGF------TREGEFRFTDEGVVVEGREVKLTRKEKEILKVLVENRGKAVSKEEIVAK 174

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G ++   +++DV +  LR KL       + I+TVWG GY
Sbjct: 175 VWKG-EQVNKRVVDVHVKHLRDKLG------DRIKTVWGVGY 209


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  + + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 119 --SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S G    L+++ G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 PGSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+    G   ++ TV G GY
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGY 225


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V     GE+ ++L     ++ +ILDL +  I G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++++    L++++    V V    I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++D     +   + V I KLRKK+        +I+TVWG GY
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGY 228


>gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
 gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 3   LKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 63  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRH-- 120

Query: 121 GHAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H  + +V         DL +++  +     G  + LT KEY ++ELL  +    L++  
Sbjct: 121 -HISAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTT 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 180 IASLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 229


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L    + V V   G +G+   + +  D I+LD+ +  + G E 
Sbjct: 4   ILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGLEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           LR  R A   TPV  L+   +  DKV GL+ GADDY++KPF+  EL+ARIRA++RR+   
Sbjct: 64  LRKYR-ADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGEK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L ++  ++T  V+G R+ LT  E+++++L         T+   L HL + 
Sbjct: 123 PTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHLQED 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E + +DV +  +R K+    G    IETV+G GY L
Sbjct: 183 SVGSE-RTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRL 221


>gi|319898567|ref|YP_004158660.1| two-component response regulator [Bartonella clarridgeiae 73]
 gi|319402531|emb|CBI76074.1| two-component response regulator [Bartonella clarridgeiae 73]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +  ++D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETIDYDVMVVDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +S ++D++ GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPDK 226


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +E  L+ E F       G   + L +    D ++LD+ L ++ G EV
Sbjct: 14  VLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDGLEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           LR +R +   TPV +++  +   DK+ GL+ GADDY++KPF+  E+VAR++A++RR    
Sbjct: 74  LRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  G L ++ +     + G R+ LT  E++++E L+       ++   L     
Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAALP 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E +++DV +  LR+KL  AAGG   +ETV G GY L
Sbjct: 193 DSDALE-RVVDVHLKNLRRKL-EAAGGAGLLETVRGVGYRL 231


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I++ +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V G ++ LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 233

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +  +I+  L+  ++ V     G + +       FD IILD+ +  I G E
Sbjct: 5   KILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNNFDLIILDIMMEGIDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  ++  P+  +S  +  EDK++ L  G DDYISKPF+ +EL ARI   +RR   
Sbjct: 65  LCSMIR-DRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREER 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++HLT KEY++I+LL L KN   +KE     +
Sbjct: 124 IRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIIKLLMLNKNMVFSKERIFESV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +++ +   I  +RKK+ +     +YI+T++G GY
Sbjct: 184 WGLDSESQLETVTESIKNIRKKIRSLDPEHSYIKTLYGLGY 224


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   I+   + E F       G   +E+C+   FD II+D+ + ++ GF 
Sbjct: 3   RLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
            +R +R    STPV +LS      DK+ G + G DDY+ KPF+ +EL+ R+ AI++RS  
Sbjct: 63  AVREIRKTS-STPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G AQ  +VT G L+V+   + V + G R+ +T KEY +   L   K   LT+E  +N ++
Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +D  I  LRK L   +G    I T+ G GY
Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGEYSGT---ITTLRGVGY 218


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   +   L+ E + V     GE  ++L    + D +I+D+ +  + G E 
Sbjct: 6   ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +++ K+  P+ ILS    + DK+ G + G DDY +KPF+  EL  R++A++RRS+  
Sbjct: 66  SQKIKM-KVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++   +  +    + V + G  + LT KE+ M+ L++   N   ++   L  +
Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   E +   + V I +LR+K+   A     I+TVWG GY
Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGY 225


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDYI KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
             +  +     GDL +++    + V+G+ + LT  E++++  L+        +    E  
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L + ++G +    + ID  +  LR KL +      ++ TV G GY     A+
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQ 233


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +EL L++E F V     GE  + +   +E   ++LD+ +  + G 
Sbjct: 7   IRILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+       V +L+    I+D+V+GL  GADDY+ KPF+ EEL+ARI+A +R   
Sbjct: 67  EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +  QG  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E  I++V+I  LR+KL +       I T+ G GY
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDKE--HRVIRTLRGAGY 223


>gi|312130354|ref|YP_003997694.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906900|gb|ADQ17341.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 227

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+    + I+  L+  N  V +   G+ G+ L +  E+  II D+ L +I G 
Sbjct: 4   LKILLIEDEVKTLNLIKEGLEENNAQVDIAYDGQMGLTLAERNEYSLIISDIILPEINGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+ + + ED + GL SGADDY+SKPF   EL ARIRA+ RR  
Sbjct: 64  TLCKTLRDNGNHTPILLLTALGTTEDIITGLDSGADDYLSKPFEFSELRARIRALTRRGN 123

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q  +++   DL +N+D K V+     I LT KE+ ++E         ++K      +
Sbjct: 124 AVIQKSNILRVADLELNVDTKAVKRGDKEITLTAKEFSLLEFFMSNVGRVISKVELAEKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +    +I+V++  LRKK+      K  I T  G GYV++
Sbjct: 184 WDITFDTGTNVIEVYVNFLRKKIDKDFDVK-LIHTQIGMGYVMK 226


>gi|239627972|ref|ZP_04671003.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518118|gb|EEQ57984.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 219

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 13/224 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +RIL+++D+K +   I++ L +  +        +DGI   K  E   FD I+LD+ L   
Sbjct: 2   IRILIVDDEKPICDLIDMNLSASGYQCAAV---QDGIAALKMIEEEAFDLILLDIMLPGA 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++++  +R   +  PV  ++    ++D+V+GL+ GADDY+ KPF+  EL AR+ A++R
Sbjct: 59  DGYDIMEYIR--PLGIPVIFITAKHEVKDRVKGLRLGADDYLVKPFDVVELTARVEAVLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     + L+  GD++V+++A+ V   G  + LT KE+ ++ L    KN  L +E     
Sbjct: 117 RY-NKTEHLLSAGDVTVDVEARMVTKAGRPVVLTNKEFGLLVLFIRNKNVALFRETLYEK 175

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++G    + + +D+ + +LR+KL    G +N +  V+  GY L
Sbjct: 176 VWEGEYSGDSRTLDLHVQRLRRKL----GWENSLVAVYKVGYRL 215


>gi|146341626|ref|YP_001206674.1| putative two-component response regulator (QseB/CopT-like)
           [Bradyrhizobium sp. ORS278]
 gi|146194432|emb|CAL78457.1| putative two-component response regulator (QseB/CopT-like)
           [Bradyrhizobium sp. ORS278]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L+  +   L S  + V       D  +      + A+ILDLGL D  G 
Sbjct: 1   MRLLVVEDNNELSKLLSQGLASAFYQVDTVSSAADARDALNDISYAAMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV +L+    ++D+V GL+SGADDY+ KPF  EELVAR++AI+RR  
Sbjct: 61  SVLTELRRRGDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLQAILRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+L  + +++   V G    L+ +E  ++E+L  R+   + K+   +H++ 
Sbjct: 121 QLLGRSLELGNLVYDTESRQTFVGGAPRTLSARELSVLEILLRRQGRVVPKKAVEDHIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V++ +LRK+L+   G    I T+ G GY++
Sbjct: 181 LTGEVGSNAVEVYVSRLRKQLAE-YGATVVIHTIRGVGYMM 220


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   I + L +E + V     GE+ +   K   +D I+LD+ +  + G 
Sbjct: 4   LRVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKMDGI 63

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            V + +R V+K+  P+ +L+  +   D++ GL+ GADDY+ KPF+  ELVARI+A++RR 
Sbjct: 64  TVCQEIRKVSKV--PIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRV 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  GH   L+    + ++L ++ V V+   I LT KE++++ LL+     + ++E 
Sbjct: 122 GTEEKKEGH---LLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQ 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      +V+ +D  + +LR KL  AAG  N+I+TVWG GY
Sbjct: 179 LLEEVWGFDYYGDVRTVDTHVNRLRDKL-RAAGAGNFIKTVWGVGY 223


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60
           ++L++ED++ +   + + LK   +       GED  + L +       +LD+ L  I GF
Sbjct: 3   KVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       + +L+  +   DKV GL +GADDY++KPF+  EL AR+ A+ RR+ 
Sbjct: 63  EVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRTG 122

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G  +      I      +N   +T+E  G R+ LT  EY +++L        L++E  L+
Sbjct: 123 GEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEILD 182

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G+D   E+KI+DV I +LR K+ +      Y+ TVWG GY
Sbjct: 183 AVW-GKDYFGELKIVDVNIRRLRIKIEDNPTKPTYVNTVWGYGY 225


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   ++  L+   + V V   GE+ ++  K  + D I+LD+ L    G E
Sbjct: 4   RVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS  
Sbjct: 64  VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +      IV G + +  D   V      + LT KE++++  L  R+   +T+E  
Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN +++     + +I+DV I  LR KL        +I+TV G GY L
Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKL 230


>gi|309803486|ref|ZP_07697579.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164370|gb|EFO66624.1| response regulator receiver domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 229

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 2   VKVLVVDDDKEIVELLSIYLKNENYDPVVACDGREA--LTKFRMDPSITCIILDIMMPEM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + ++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 60  SGLDFIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 118

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 119 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 178

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 179 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 225


>gi|307249832|ref|ZP_07531808.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858134|gb|EFM90214.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F ++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
           +  S   +I   + S   ++K +   G  +H              LTG E+ ++++L   
Sbjct: 122 NILSNPDVITYSNQSPKENSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 4   KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 64  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 HAQSLI---VTGDLSVN---LDAKTVE--VQGHRIHLTGKEYQMIE-LLSLRKNTTLTKE 172
           ++  +I   +  +LS N   L+ +T E  + G  + LT  E+ ++  +LS   N    +E
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +F     D         I V I  LR+KL++ +    YI+T+WG GY
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGY 229


>gi|302540139|ref|ZP_07292481.1| two-component system response regulator [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457757|gb|EFL20850.1| two-component system response regulator [Streptomyces
           himastatinicus ATCC 53653]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  LA ++   L      V      +D + L    +F  ++LDLGL D+ G 
Sbjct: 1   MHVLLVEDDDRLAAALTSALDRLGHQVVRAGRADDALRLKDGADF--VLLDLGLPDMDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR LR A  + PV +++  ++  D +R L+ GADDY+ KPF   EL+AR+ A+VRR  
Sbjct: 59  EALRRLRRAS-AVPVIVVTARAAERDVLRSLRGGADDYLVKPFRTAELIARMEAVVRRGT 117

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++  G + ++L  + +EV GH + LT +E+ ++ LL+       ++E  L+ 
Sbjct: 118 RPLTAAGPVVAVGGVRIDLATRQLEVDGHPVALTRREFDVLALLAREPGVVRSREEILDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +DV I  +R K     G    +ET+ G GY L
Sbjct: 178 IWGDLLLSASRSLDVHIAGIRSK----TGRPELVETLRGTGYRL 217


>gi|86358186|ref|YP_470078.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86282288|gb|ABC91351.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 223

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTD----LGEDGIELCKFYEFDAIILDLGLTD 56
           MRILLIED++ LA ++   L        VTD    LG D +EL +   +DAI+LD  L D
Sbjct: 1   MRILLIEDERELAGALSAALGKHGI---VTDHTMHLG-DAVELTRQNHYDAILLDRRLPD 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G   +  LR     TP+ +L+ ++  + +V GL  GADDY+ KPF  EEL+AR+RA++
Sbjct: 57  GEGLRFIPELRRTGRDTPIIVLTALNEPKQRVEGLDLGADDYLGKPFLVEELMARLRAVL 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR    ++  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +     
Sbjct: 117 RRQPNLSELKITAGRMVIDPLHLSVTVGDTPLDLPRRELLVLAALAKRKEKTVLRSTLEA 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +Y+  ++ +   +D  I +LRK+L++ AG +  I  + G GY++RE
Sbjct: 177 AVYNYEEKIQSNALDAHISRLRKRLTD-AGAEVSIHNIRGVGYLMRE 222


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M+ILLIED++    +IE + +      YV D    G DG+ L     +  IILD+ L  +
Sbjct: 23  MKILLIEDNQ---KTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGL 79

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R
Sbjct: 80  DGWQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + 
Sbjct: 139 QHVPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASE 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 198 VWGINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241


>gi|187930616|ref|YP_001901103.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187727506|gb|ACD28671.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 236

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+A+A  I   L      V V   G    E       D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRAIASGIHAGLTQAGHRVQVVHDGVFATEQLARQTHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L   R     TPV IL+    + DKV GL +GADDY+ KPF   ELVAR+ A++RR  
Sbjct: 61  TLLSQFRARDRVTPVLILTARDGLLDKVNGLNAGADDYLLKPFEMLELVARVGALLRRRG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   A+  I+ G L ++   + + V    + L+ +E+ ++ELL LR+   ++K    +
Sbjct: 121 DPTEPAARPDILVGRLRMSGVERRIFVDAAPLELSPREFAVLELLMLRQGRVVSKVQLQD 180

Query: 177 HLYD-----GRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL       G    +V     I+V++ ++R+K+ ++   +  I TV G GY+L+  A
Sbjct: 181 HLASFGHAIGEASHDVVGDTAIEVYVHRVRRKIEHS---EAEIVTVRGFGYLLQARA 234


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/240 (31%), Positives = 128/240 (53%), Gaps = 16/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIP 58
           ++LL++D++ +   ++  L  E    Y T+L EDG   ++L     +D I+LD+ L  + 
Sbjct: 4   QVLLVDDEEHILRLLDYHLHKEG---YETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR
Sbjct: 61  GIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRR 120

Query: 119 SRGH----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +             A+   +  D  +  +   V      ++LT KE++++  L    N T
Sbjct: 121 TDKEDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMT 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LT+E  L  ++      E +++DV I KLR+K+ +       I+T+ G GY  +E   +E
Sbjct: 181 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQFKEKQDEE 240


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++L   +   L++E F V V   GE+          D ++LD  +  + G E
Sbjct: 5   RILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 65  LCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ +
Sbjct: 125 KPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 185 WGHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 228


>gi|188996091|ref|YP_001930342.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931158|gb|ACD65788.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           + +++IEDDK LA  +   L   N +V   +  +  +E L K   +D +ILDL L +I G
Sbjct: 2   INVIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEIDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + L   + + P+ I S  S   DK+  L+ GADDY++KP+N  ELVARI+A++RR 
Sbjct: 62  IDICKML-AKEGNIPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRRK 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL-NHL 178
               + +I  G+  ++ +   ++  G  ++LT  EY+++ +L   K   LT++  L N +
Sbjct: 121 NKAVEKVIKCGEFELDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGRVLTRDYILDNSI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y   D  + + +DV I ++RKK+ +      YI +V G GY
Sbjct: 181 YLNYDSID-RTVDVIIGRIRKKIGDDPKNPKYIISVRGFGY 220


>gi|329571904|gb|EGG53582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1467]
          Length = 209

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 9/203 (4%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           G++G EL    ++D IILD+ L  + G E+ +ALR  KI TP+ IL+      DK+ GL+
Sbjct: 7   GKNGFELALSNQYDFIILDVMLPGMDGLEITKALRREKIDTPILILTAKDEQVDKIIGLE 66

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRG---------HAQSLIVTGDLSVNLDAKTVEV 143
            GADDY++KPF+  E++AR++AI RR +            ++ +V G++ V+     V V
Sbjct: 67  IGADDYLTKPFSPREVLARMKAIFRRLKPTTTEPLQEDTPKAPLVIGEIRVDEQNYEVFV 126

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
           +   I LT KE++++     RK+  + +E  L  ++      + +I+DV I  LR K+  
Sbjct: 127 RNQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQYDFAGQSRIVDVHISHLRDKIEP 186

Query: 204 AAGGKNYIETVWGRGYVLRENAK 226
                 Y+ TV G GY  +E  +
Sbjct: 187 DPKRPVYLVTVRGFGYRFQEPKR 209


>gi|304396273|ref|ZP_07378155.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356642|gb|EFM21007.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 226

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 19/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           M+IL++EDD  L   + L L+ E +         DG+   +  E       +  ++LDLG
Sbjct: 1   MKILIVEDDALLLQGLILALEGEGYVC-------DGVTRVRDAEAHFASGLYSLVVLDLG 53

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L D  G   L  LR  K  TPV IL+   +I +++ GL +GADDY+ KPF+ +EL+ARIR
Sbjct: 54  LPDEDGLHFLIRLRRQKKMTPVLILTARDTINERIAGLDAGADDYLIKPFSLDELLARIR 113

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR      S +  G L++++  + + +    + LT KE+ ++  L L+    + +E+
Sbjct: 114 ALIRRHVNQGDSHVRVGALALDMTHRQIMLNDVLLDLTPKEFAILSRLMLKAGNPVHREI 173

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +Y+   EP    ++V I  LR K+     GK+ I TV G GY L
Sbjct: 174 LYQDIYNWETEPSTNTLEVHIHNLRDKI-----GKSAIRTVRGFGYAL 216


>gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus
           ST398]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF
Sbjct: 2   VQCLVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR  
Sbjct: 62  QLCNTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H+ S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++ 
Sbjct: 121 IHSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E + + +DV I +LR++L         IETV G+GY
Sbjct: 181 YDYEGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|126657526|ref|ZP_01728682.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126621230|gb|EAZ91943.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 222

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 8/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  ++  L++  F V V    +   E+    EFD I+LDLGL    GF 
Sbjct: 3   RILIAEDEPRIAAFLKKGLEANGFTVEVASDAKMASEMVFSQEFDLILLDLGLPLKDGFI 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   ++ P+ IL+    I+DKV GL+ GADDY++KPF  EEL+ARIR  ++    
Sbjct: 63  LLEELRGQGLTLPIIILTARDDIKDKVAGLEGGADDYVTKPFRFEELLARIRLRLKNRVD 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q+ + +G + +NL ++ V +    + ++  E+ ++E+L   K   +T++  L+H+
Sbjct: 123 NFIPIQTELKSGKIVLNLRSRQVYLDNQLVEISNTEFTLLEILISHKGQVMTRQQLLDHV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    +P   I+DV+I  LRKK+     GKN I T+ G GY
Sbjct: 183 WGYSYDPGSNIVDVYIGYLRKKV-----GKNTIATIRGIGY 218


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 13  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDGIS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR      P+ +L+      D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 73  ICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  H   ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 133 ELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 192

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 193 MN-LARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 239


>gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 231

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L   +   L  E F       G+ G E      +DA+ILD+ L  + G E
Sbjct: 6   RILLIDDDADLGSMLTEYLAGEGFETTTILNGDTGAEAALSGAYDAVILDVMLPGLGGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R A    P+ +L+      D++ GL+ GADDY+ KP    ELVAR+RA++RR   
Sbjct: 66  VLRRVRQAS-RIPIIMLTAKGDHVDRIVGLEMGADDYVPKPCYPRELVARLRAVLRRMAD 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R   ++L V G L +    + V   G  + LT  E+ ++E+L    +  ++K+    
Sbjct: 125 AGERPPGETL-VQGKLKLLPPQRKVSWDGKPLDLTVSEFNLLEILLHEGDRVVSKDELSE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  EP  + +DV +  LR+KL  AAG +  IETV G GY +R +
Sbjct: 184 RALGRPREPYDRSVDVHVSNLRQKLHAAAGDEICIETVRGIGYRVRRS 231


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +    + + + V     G + ++    +  D I+LD+ +  I GFE
Sbjct: 4   KILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQSS-HNPDLILLDVNMPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R   +S P+  L+     +D+++GL  G DDYI KPF+ +EL AR+ A +RR   
Sbjct: 63  VCRMIR-DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           R  +Q++ + G L+++   ++V   G  ++LT  E+ ++ELLS+      T+E   + + 
Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            YDG  + +  I+   I ++R K+S A   K YIETVWG GY
Sbjct: 182 GYDG--DGDSSIVTEHIRRIRAKMS-AVSEKQYIETVWGVGY 220


>gi|303249652|ref|ZP_07335857.1| transcriptional regulatory protein CpxR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252184|ref|ZP_07534082.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254443|ref|ZP_07536280.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307256654|ref|ZP_07538433.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307258902|ref|ZP_07540633.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261089|ref|ZP_07542768.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263271|ref|ZP_07544889.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|302651464|gb|EFL81615.1| transcriptional regulatory protein CpxR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860328|gb|EFM92343.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862584|gb|EFM94541.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864702|gb|EFM96606.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866926|gb|EFM98783.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869221|gb|EFN01019.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306871333|gb|EFN03059.1| Transcriptional regulatory protein cpxR [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 242

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 124/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F ++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
           +  S   +I   + S   ++K +   G  +H              LTG E+ ++++L   
Sbjct: 122 NILSNPDVITYSNQSPEENSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 73  AKMIR-SQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDQ 131

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++ +   ++ V+ DA  V V    I LT KE+++++LL   K   +T+E  +  ++  
Sbjct: 132 STENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  +RKKL  +     YI+TV G GY + E
Sbjct: 192 EYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 19  MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 78

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 79  MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 137

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 138 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 198 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 242


>gi|167572481|ref|ZP_02365355.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 240

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIHEYLDSYEFSVTVVRRGDLAVAAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR++ 
Sbjct: 69  VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GAPVDTPASEALVFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|167646385|ref|YP_001684048.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167348815|gb|ABZ71550.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 234

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  L   I   L+ E F V   +  E+G+E      +D I+LDLGL D  G 
Sbjct: 4   MRLLLIEDNARLGELIAEGLEREGFVVDWRETLEEGLEARGLAPYDLILLDLGLPDGDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  + + P+ IL+    + +K+ GL  GADDY+ KPF+  EL AR RA++RR  
Sbjct: 64  DLVRRLRRDRDAVPIMILTARGGLGEKIAGLDVGADDYLVKPFDIAELAARCRALLRRPG 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+++++  A+++ V G  + +T +E  ++E L  R    + K    + LY 
Sbjct: 124 ACLGVVLSAGNIALDTAARSLVVAGASVSITPRELALLEHLLRRAGQVVPKASLEDQLYA 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++V + +LRK+L+  AG    + T  G GY L
Sbjct: 184 MDREVTPNALEVAVSRLRKRLAG-AGADVVLRTAHGVGYAL 223


>gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFE 61
           +L++EDD  +   +E   + E++ V   + GE  ++  K   + D ++LD+ L +  GFE
Sbjct: 11  MLIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   +    S PV +++     E K++G   GADDYI+KPFN EEL AR++AI++R+  
Sbjct: 71  VLEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMP 130

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++   +   GD+ VN         G  ++ T  E+ ++  L   K  T+T++  L  +
Sbjct: 131 PAEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDV 190

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + G DE  + + ID  +  +RKK+        YIETV+G GY   E
Sbjct: 191 W-GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDE 235


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++DDK + + I++ L++E +N+     G + + +    +FD +ILD+ +  + G 
Sbjct: 3   INILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                +R    + P+  LS      DK++GL  GADDY+SKPF   EL+AR++A +RR +
Sbjct: 63  SACIKIR-ENYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYK 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S++   DL++N D   V V+G ++ LT KE+ ++E L+  +    +    +
Sbjct: 122 KFNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFS----V 177

Query: 176 NHLYDGRDEPEVKIID----VFICKLRKKLSNAAGGKNYIETVWGRGY 219
             LY+   + E  + D    V I  LR+K+        Y++TVWG GY
Sbjct: 178 QKLYEIIWKEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGY 225


>gi|220935053|ref|YP_002513952.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996363|gb|ACL72965.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 244

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I++ L+S+ +   +   G +G+ L      D ++LDLGL D  G E
Sbjct: 16  RILVVDDEPQIRKFIDISLRSQGYATLLAGTGREGLTLLASKGADLVVLDLGLPDKDGKE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR      PV +L+  S  E+KV  L +GA+DY++KPF  EEL+ARIRA +R    
Sbjct: 76  VLKELRRWS-RVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGVEELMARIRAFLRTLGS 134

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A+   V  D  + ++L  + V V G  + L+ KE+ ++ LL+ +    +T+   L  ++
Sbjct: 135 GAEEDPVYDDGVVRIDLAQREVTVHGQVVTLSRKEFSLLSLLARQPGRLITQTQILREVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
               E +   + + + KLR KL + A    YI T  G G
Sbjct: 195 GPTHEEDAHYLRILVGKLRNKLGDDASAPRYIVTEPGVG 233


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIP 58
           RILL+ED++ +A  +   L    F V   DL  DG   + L      D ++LD  L  + 
Sbjct: 17  RILLVEDEQTIAGVVRDYLVQAGFQV---DLAADGFTALRLAAERHPDLVLLDRMLPGLD 73

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R LR   +S PV +L+ + + +D++ GL+ GADDYI+KPF+  ELV R+R+++RR
Sbjct: 74  GVEVCRRLR-QTMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRR 132

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S      +  +      +N  A+TV   G  + LT +E+ ++     R N   ++E  + 
Sbjct: 133 SVQEFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIR 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ G D  ++  + V + +LR+K+         ++TVWG GY L
Sbjct: 193 AVW-GWDFGDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRL 236


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              ++V +I+  P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR   
Sbjct: 75  --CMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    ++ I  GD+ VN+  + V +    + LT +E++++ELL   +   L      
Sbjct: 133 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I K+R+K+        YI+TVWG GY
Sbjct: 193 ERVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGY 236


>gi|229590929|ref|YP_002873048.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362795|emb|CAY49705.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++LL+EDD+ LA  I   L    F V V   G+    L  F EF    ++LDL L    G
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVRVEHRGDKA--LAAFLEFKPKIVVLDLMLPGQSG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR 
Sbjct: 66  LHVCRGIRTVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQ 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +  G L+++   + V +   +I LT  E++++ LL+    T L+++  LN 
Sbjct: 125 APEPTVRGALAFGRLAIDRSCRVVSLGDEQIDLTTMEFELLWLLASNSGTILSRDDILNR 184

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +DG +    + +DV+I KLR KL++       I+T+WG+GY+    A
Sbjct: 185 MRGIAFDGLN----RSVDVYISKLRGKLNDNPREPVCIKTIWGKGYLFNPFA 232


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +A  + L L+ E + +     G   +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + E     ++  I +LR K+       + I TVWG+GY
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGY 227


>gi|311747539|ref|ZP_07721324.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
 gi|126575520|gb|EAZ79830.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1]
          Length = 227

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L  +I   L  +       +   D  +    Y +D IILDL L D  G 
Sbjct: 1   MKILLVEDNPELTENISNYLADQGMLCESANTLFDAQDKILSYGYDCIILDLMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  ++  K+   + I+S   S++DK+ GL  GADDY++KPF+  EL+AR++AI RR++
Sbjct: 61  TLLELIKSRKMEISILIISAKGSLDDKLSGLDLGADDYLAKPFHLAELLARLKAIYRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                 +V  ++++      V V    + LT KEY ++      K+  + K    +HL+ 
Sbjct: 121 MQGFDEVVYNEITIINSQLQVLVNNQLLDLTKKEYDLLLFFLTNKDRVVGKNAIAHHLWG 180

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D+      +   +  LRKK+S AAGG++YI TV+G GY
Sbjct: 181 DYTDDLSNFDFVYQHVKNLRKKIS-AAGGRDYIRTVYGLGY 220


>gi|94314250|ref|YP_587459.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
 gi|93358102|gb|ABF12190.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 225

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DD+  A  +   L+ E ++V  T    D       Y F  +ILD  L    G 
Sbjct: 1   MRILLVDDDQKAARLLARGLQEEGYDVE-TAHSVDVAAAHNCYAFSLLILDWMLPGKSGV 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR   + TP+ +L+   +I D++ GL +GADDY++KPF  EEL+A +RA++RR  
Sbjct: 60  EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++   + V   G R+ LT KEY ++ LL       +++     H++ 
Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   +IDV +  LR+KL +  G    I+TV G+G+
Sbjct: 180 ADLIAIDNLIDVHMKNLRRKL-DPPGMAALIQTVRGQGF 217


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 118/224 (52%), Gaps = 11/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +   ++L L+ E F V   D G   ++L +    D  ILD+ +  + GFE+
Sbjct: 5   ILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLNGFEL 64

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            RALR  K S  P+ ILS  S   DK+ GL  GADDYI+KPFN  E+VAR++A +RR+  
Sbjct: 65  TRALR--KFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRASR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMFLNH 177
               ++   +L+++     +   G +I LT  EY+++ LL        TK    E  + +
Sbjct: 123 SGSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIGN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++G D   +    V I KLR K+ +      YI TV G GY L
Sbjct: 183 YFEGDDNTMM----VHISKLRDKIEDDPKSPRYIITVRGLGYKL 222


>gi|288906017|ref|YP_003431239.1| two-component response regulator, CovR family [Streptococcus
           gallolyticus UCN34]
 gi|306832036|ref|ZP_07465191.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978984|ref|YP_004288700.1| putative two-component response regulator, CovR [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288732743|emb|CBI14317.1| putative two-component response regulator, CovR family
           [Streptococcus gallolyticus UCN34]
 gi|304425962|gb|EFM29079.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178912|emb|CBZ48956.1| putative two-component response regulator, CovR [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 134/228 (58%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E ++V V   G  G++     +FD I+LDL L D+ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR+ K  T + +++   SI D V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 64  ITRRLRLEK-ETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKT-VEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            S+    S    G L + L+ +    V+G   I LT +EY ++ +L    N  +T+E  L
Sbjct: 123 ESKREQDSQGKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++    + E  ++DV+I  LR K+ +  G ++YI+TV G GY++RE
Sbjct: 183 ASVWRYDTDIETNVVDVYIRYLRGKV-DIPGKESYIQTVRGMGYIIRE 229


>gi|283781851|ref|YP_003372606.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283440304|gb|ADB18746.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L SE + +       +G+++      D I+LDLGL D  G EV
Sbjct: 13  VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  LR    ++P+ ILS       K++ L  GADDY++KPF+  EL+AR+R  +R S   
Sbjct: 73  LEQLR-EWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRT 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +    GDL V+  ++ V  +   +HLT  EY+++  +       LT    L  ++ 
Sbjct: 132 GTEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D  E   + VF+  LR+K+        YI T  G GY  R
Sbjct: 192 PQDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRFR 233


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK     V V   G  G ++ +   FD +ILD+ +  I G E
Sbjct: 4   KILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKINGLE 63

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      +PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 64  LCRLYRQTFGYQSPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 124 EVTSNLLTCDNLILDCNTRRAKRGNIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 184 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 223


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +   L+ E + V     G  G+EL +    D I+LD+ L  + G E
Sbjct: 3   KILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNGLE 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R +    A  + PV +LS  +   D+V GL+ GADDYI+KPF+  ELVARI+A +RR 
Sbjct: 63  VCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRRI 122

Query: 119 --SRGHAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               G  +  +  G L      ++ +   V V G ++ LT KE++++  L+ +     ++
Sbjct: 123 QKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      + + +DV I  +R+KL   +     IETV G GY  RE
Sbjct: 183 EQLLEQVWGYDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCFRE 234


>gi|116328024|ref|YP_797744.1| sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331523|ref|YP_801241.1| sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120768|gb|ABJ78811.1| Sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116125212|gb|ABJ76483.1| Sensor protein of a two-component response regulator [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 222

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL ED+  +  +I ++L+SE F +     G++ + L K    D ++LD+GL D  GFE+
Sbjct: 4   ILLTEDEPGIRDTIRVVLESEGFKMISAMTGKECLSLLK-ESPDLLVLDVGLPDGNGFEI 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  K S PV +L+   S  D+V GL+ GADDY+ KPF+  ELVARI+A++RR  G 
Sbjct: 63  LKELR-KKNSIPVILLTARESELDRVLGLELGADDYMVKPFSPRELVARIKAVLRRYDGS 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           ++      +   + D K +   G  + LT  EY+ + L   R     T+E  ++ ++   
Sbjct: 122 SEK--KRTEFLTDEDRKIIYYYGKSLTLTPYEYKTLLLFLKRPGKIFTREEIMDSVWTEP 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +E   + +D  I  +R +L       + IET   +GY L+E
Sbjct: 180 EESFDRAVDTVIKNIRSRLKEIRPDTDPIETRRAQGYGLKE 220


>gi|86359177|ref|YP_471069.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86283279|gb|ABC92342.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+ ALA  +  +L+     V V   G     +     FD +ILDL L ++   
Sbjct: 1   MRILLTEDNIALADGLSAILRGTGHAVDVVHDGASANAVIAAENFDLVILDLNLPEMDWL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRA+R  +    V IL+   + E++V+GL  GADDY+ KPF+  E  AR+R ++RR  
Sbjct: 61  DVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +S +L+++T       + +  +E  ++E+L +R    + KE  +  L  
Sbjct: 121 GLRSATVGFGGISFDLNSRTFSSGDTPLDIPARELGLLEILFMRAGKVVAKEAIIQSLTA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+ ++ +LRK+LS        ++T  G GY L
Sbjct: 181 FDDDISANAIEQYVSRLRKRLSPHG---LTVKTARGIGYYL 218


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  ++  L+   F+V +   G+ G++       D I+LDL L  + G EV
Sbjct: 5   VLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR  +I+ P+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR  G 
Sbjct: 65  CKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSGP 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ +   G+L V  +     +    +  T KE++++  L   KN  LT++  
Sbjct: 125 VVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV I  LR K+   +    YI+T+ G GY   E  K
Sbjct: 185 LSAVWNYDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFEEPKK 236


>gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +  ML    +       G +G+   +  ++D +ILDL L    G  
Sbjct: 5   KILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYKSGDA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR    S PV ++S   ++++K+     GADDY++KPF+ +E++ R+ A++RR   
Sbjct: 65  VLQELRSFS-SLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++  G L+V+ ++KT  V G  + LT KEY ++ELL    +   +K      
Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     E   ++V +  LR KL  A     YI+TVWG GY
Sbjct: 184 IWNEEYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGY 225


>gi|294651275|ref|ZP_06728601.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822841|gb|EFF81718.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 131/227 (57%), Gaps = 14/227 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F+V   + G DG+ L     FD ++LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQFHQFDVEWVNNGVDGLALLGKQAFDLVLLDLGLPLMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  + + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RR   
Sbjct: 63  ILKQIR-QRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGNT 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++G+ Q L+ +GDL ++++  +   +G +I L+ +E+ ++  +    N   +K   
Sbjct: 122 VMNQNKGNTQ-LLKSGDLILDVEQHSATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + LYD   E     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 181 EDKLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  ++V   D G+  +      + D I+LD+GL DI GF V
Sbjct: 15  VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ RIRAI+RRS   
Sbjct: 75  TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  +   DL ++     V   G  I L+  E++++  L  +    + K+  L+ 
Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + +I+D ++  LR+K+         I+TV G GY L
Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKIDRFE--PQLIQTVRGVGYCL 236


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 82  WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 241


>gi|218437686|ref|YP_002376015.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170414|gb|ACK69147.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +   L      V   + GE    L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDPTQLKPLHGALSKVGHIVDGVEDGETAQWLMTQRDYDLLILDWMLPAVSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R    + PV  L+   +I DKV  L  GADDYI KPF+  EL+AR+RA+ RRS 
Sbjct: 61  SLCQQYRQLGKNAPVLFLTAKDAILDKVSALDVGADDYIVKPFSLLELLARVRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++L + TV+ Q   + L+ +E Q++E +       LT +     L++
Sbjct: 121 HWQGDILSLGDLELHLHSLTVKRQNLEVQLSARECQLLEYMLRHPRQILTHDQIEQALWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P+ K I + + +LR++L      +++++TV+G GY L
Sbjct: 181 WTTQPDSKAITMLVHRLRQRL-QMVQAQDWLQTVYGAGYRL 220


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVRGMGYRLQ 219


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 129/232 (55%), Gaps = 18/232 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   I  +L +E ++V     G + I+  ++++   +ILD+ +  + G+E 
Sbjct: 8   VLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYET 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR  +   PV +L+  S   DKV GL++GADDY++KPF + EL+AR+ AI+RRS  +
Sbjct: 68  LDILR-KQSGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126

Query: 123 ---AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
               Q+   + D        +++N  +K V V  + + LT KE++M+EL         ++
Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186

Query: 172 EMFLNHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L  ++ G D      + +D  +  LR KL +A+    +I+TVWG GY L
Sbjct: 187 EQLLEAIW-GMDYLSASSRTVDTHVKTLRLKLRDASA---HIQTVWGIGYKL 234


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR RG 
Sbjct: 64  CKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RGV 121

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            ++          ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+ 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ ++      + K +DV + +LR K+        Y+ TV G GY
Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGY 228


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A +I   L++E   V    LG + ++  +    D +ILD+GL DI GFEV
Sbjct: 6   VLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPDISGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R++R      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+R I+RR++G 
Sbjct: 66  CRSMRTFS-DVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKGA 124

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + S   +       D   + D   +  +G  + LT  EY+++ LL         +   ++
Sbjct: 125 SDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLMD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D  +  LR KL   A   + I T  G GY L
Sbjct: 185 LVWHDSLDTVDRTVDTHVKTLRAKLREIAPAGDPIRTHRGMGYSL 229


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ +A  +   L    +  ++   G +G+ L + +  D +ILD+ L ++ G+
Sbjct: 1   MNILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ LR      PV  L+   S+ D+V+GL+ GADDY+ KPF+  EL+AR++ ++RRS 
Sbjct: 61  QVIQTLRQFS-EVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L ++L    V    + I LT KEY ++  L+  +   +T+    + +++
Sbjct: 120 AKVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV + +LR K+ +A   K  I T+ G GY L  N 
Sbjct: 180 INFDTDTNVVDVAVRRLRAKIDDAYQPK-LIHTIRGMGYKLDTNT 223


>gi|13473757|ref|NP_105325.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14024508|dbj|BAB51111.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDD+  A  I   L       +V DL   G D +       +D I+ D  +  +
Sbjct: 1   MRLLLVEDDQKTADYIVRGLTEAG---HVCDLLRNGHDALFAATSGSYDVIVADRMIPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++A R A + TP   L+ +  I+D+V GL++G DDY+ KPF   EL+ARI A+ R
Sbjct: 58  DGLSMVKAARAAGVRTPAIFLTSIGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGR 117

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     Q  ++   DL ++L  + V  QG  I L  +E+ ++E+L   +   +T+ M L 
Sbjct: 118 RPAAQEQKTVLRVADLEMDLIMRRVTRQGQPIDLQPREFSLLEVLMRGEGRVITRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   +P+  +++  I +LR K+      +  I T+   GY L
Sbjct: 178 RVWDFHFDPKTSVVETHISRLRAKVDKPFEAQ-LIHTIRNTGYSL 221


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 18/235 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58
           +IL+++D+K ++  I+  L  E    Y T    DG E L ++ EF  D IILDL L ++ 
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEG---YETATAFDGREALVQYAEFQPDLIILDLMLPELD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR
Sbjct: 60  GLEVAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      S  +A S I  G+L +  DA   + +G  I LT +E++++  L+     
Sbjct: 119 TENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQ 178

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +T+E  L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY ++
Sbjct: 179 VMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMK 233


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224


>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+   +    +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDSKEPKFIQNVWGVGY 228


>gi|158340334|ref|YP_001521690.1| two-component response regulator [Acaryochloris marina MBIC11017]
 gi|158310575|gb|ABW32189.1| two-component response regulator [Acaryochloris marina MBIC11017]
          Length = 673

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 118/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED + + + +  +    N+ V V   GE G +    +E+D II+D+    I G 
Sbjct: 1   MKILLVEDQENIINELLNIFSQYNYIVDVVRDGELGWKYSTAFEYDLIIIDIITPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+   S+  K+ GL +GADDY+ +P+++ EL++RIRA++RR  
Sbjct: 61  SLCKKLRTEGYFTPILLLTEQGSLTAKINGLDAGADDYLVQPYHQAELISRIRALIRRCS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N     V      + LT  EY+++ LL        + E  ++ L+ 
Sbjct: 121 TSPLPILSWENLLLNQSTCEVNYDELPLKLTNTEYELLALLMRDSQHVFSCEELIDRLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P    +   I +LR+KLS A   K+ I TV GRGY L+
Sbjct: 181 SEDFPSPATVRSHIRRLRQKLSEAGAPKDLISTVHGRGYYLK 222



 Score = 38.1 bits (87), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELCKFYEFDAIILDLGLTDIP 58
           + +++I+ D+    SI  ++K + +    T L +D     + +    DA+I++     I 
Sbjct: 538 VHVIIIDSDEDWLCSIPNVIKQKGYTA--TTLADDSQFWTVLEVIHPDALIIEYKSPQID 595

Query: 59  GFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             E+ R +R        P+ +L     +E++    Q GADD + KP +  EL  RI   +
Sbjct: 596 STEICRLIRNHPYWNYLPILLLVDGLKVENQNLLYQVGADDILFKPISSNELANRISHRL 655

Query: 117 RRSRGHAQ 124
           +R + +A+
Sbjct: 656 KRMQDYAE 663


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G++ +E  +    D +ILD+ L DI G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDGP-DVLILDVMLPDIDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI----RAIV 116
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R+    R + 
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVT 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +R       +I  G++ V    + V V G  + LT +E+ + +L          +E  L 
Sbjct: 120 KREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  A+G   +I+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLK-ASG--EHIKTIYGVGYKL 221


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +   I+  L+ E F V     G+  +++ K    D I+LD+ L    G  
Sbjct: 3   KILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDGLS 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L    A  S P+ +LS      DKV GL+ GADDYI+KPF+  EL+ARI+A +RR 
Sbjct: 63  VCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRRQ 122

Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q L     I  G L ++ D   V   G +  LT KE++++  L+       T++  
Sbjct: 123 TVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDFL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      + + +DV I  +R+KL        +IETV G GY  +E
Sbjct: 183 LEQIWGYDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRFKE 231


>gi|325066792|ref|ZP_08125465.1| two-component system, regulatory protein [Actinomyces oris K20]
          Length = 219

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E     ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVAVNDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVRDYPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P      V I  LR+KL    G    I+TV G GY
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGY 215


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   ++V     G + +   +  E D ++LD+ +  + GFEV
Sbjct: 16  LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLDGFEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR      PV  L+   ++EDKV GLQ+G DDY++KPF+ +ELVAR+RA++RRS GH
Sbjct: 76  VRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRS-GH 134

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +      +++   DL +N D+  V   G  + L+  E++++  L       ++K   L+
Sbjct: 135 REQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLLS 194

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +++ ++  LR+K+    G    + TV G GYVLR
Sbjct: 195 AVWNYDFAGDAGVVESYVSYLRRKVDT--GEPKLLHTVRGVGYVLR 238


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL+ED+K ++  I   L++ENF+V    D  E  +++ +   F   ILD+ L DI GF
Sbjct: 3   KILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQ-NSFSLAILDVMLPDITGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + +R  K   P+ +L+  S   DK+ GL  GADDYI+KPF   E++AR++A +RRS 
Sbjct: 62  DLCKIIR-KKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRST 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEMFLN 176
              G  Q+ ++  +L ++++ +   +Q   + LT  E+ +++LL  RK   + ++EMF  
Sbjct: 121 QYNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +         I V +  LR+K+ +     +YI+TVWG GY
Sbjct: 181 VWGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGY 223


>gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 224

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLTRLR-KTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFETK-LIHTLRGVGYVL 220


>gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFE 61
           +L++EDD  +   +E   + E++ V   + GE  ++  K   + D ++LD+ L +  GFE
Sbjct: 1   MLIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   +    S PV +++     E K++G   GADDYI+KPFN EEL AR++AI++R+  
Sbjct: 61  VLEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMP 120

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++   +   GD+ VN         G  ++ T  E+ ++  L   K  T+T++  L  +
Sbjct: 121 PAEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDV 180

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + G DE  + + ID  +  +RKK+        YIETV+G GY   E
Sbjct: 181 W-GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDE 225


>gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA----IILDLGLTDI 57
           R+L+I+DD  L   ++  +K E     +T  G DG  L K  E +     +ILD+ L  I
Sbjct: 4   RVLIIDDDAELCALMKKCIKQEGLEADITYTGRDG--LTKIAEQNGAYCLVILDVMLPGI 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL  +R   +  P+ +L+      DKV GL+ GADDY++KPF+  EL+ARI +++R
Sbjct: 62  NGFQVLSEIRKGSM-VPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIR 120

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R     QS    ++   ++ ++ + +TV V G  ++LTGKE+ ++  L+  K    TK+ 
Sbjct: 121 RYTTFNQSTQLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++G    +   I  FI KLRKK+        YI TV G GY
Sbjct: 181 IYTQVWEGEYAFDDNNIMSFISKLRKKIEPDVEHPFYILTVHGVGY 226


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEF--DAIILDLGLTDIP 58
           RIL+++DD +LA  I +ML+SE+   Y   L  DG + L  F+E   D ++LDL L  + 
Sbjct: 4   RILVVDDDASLAEMIGIMLESES---YTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R ++   P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR
Sbjct: 61  GVEICRLIR-SESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ +
Sbjct: 120 TNPGAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 180 WGYQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL +D++++       L+ E + V     G+D ++L   Y    I+LD+ +    G+ V
Sbjct: 4   ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDGWHV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +RV++  TP+ +L+ +    D++ GL  GADDY+ KPF+ +ELV R+  I+RR    
Sbjct: 64  AEQVRVSR-DTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYRT 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    SLI  G+L ++ D + VE     I LT KEY ++ LLS       +K   + 
Sbjct: 123 GGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLIE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++    + +   ++V I +LR+K+        +I TVWG GY   E  +DE+
Sbjct: 183 KVWGYEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRF-EGERDES 234


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  +   +E  L     +V     G  G+   +   FDA++LD+ +  + G E
Sbjct: 4   RVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK   PV +L+      D+V GL+ GADDY+ KPF+  EL+AR+RA++RRS+ 
Sbjct: 64  VCKRIR-AKSRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRRSQP 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A +  + +G +S+++  + V V+   + LTG E+ ++  L  R    + ++  L     
Sbjct: 123 SAVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVALVRRAGRVVPRDALLGEA-- 180

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           GR +  V  + +DV I  LR+KL +   G   I+TV G GYV 
Sbjct: 181 GRSDTVVGERTVDVHISHLRQKLGDV--GTRLIKTVRGVGYVF 221


>gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 214

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 127/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V VT  G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVTSDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 4   KILVIDDDKELCALIKQSVAVESIDADHCYSGTDGLAMLQKNDYQLILLDVMMPGLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R  K S P+ +L+  +    K+RGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 64  TMEKIR-QKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  H+Q L   G L++++D+++V  Q     L  KE+ ++   +  +   LTK+   
Sbjct: 123 FNTTGDHSQPLTYQG-LTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKK+ + +    YI+TV G GY
Sbjct: 182 EEVWGESYVYDDSNIMAIISRLRKKIESDSSAPYYIQTVKGIGY 225


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 129/239 (53%), Gaps = 14/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +  ++   L+ EN+ V     G+  +E  + + FD +ILDL L  + G  
Sbjct: 7   RILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDVS-NVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++    ++  G L++++    + ++G  + LT  E++++  L+       ++    E  
Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231
           L + ++G +    + ID  +  LR KL +     +++ TV G GY      NA  +T E
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFEAAPNAYSDTAE 240


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+S  F V+    G+ G+EL    + D ++LDL L  + G +
Sbjct: 5   RLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGMSGLD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V + L+    +  TPV +L+      D++ GL+ GADDY+ KPF+  ELV RI+A+++R 
Sbjct: 65  VCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKRG 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    ++      LS++ +A  VE+ G  + LT  E++++  L   +    T++  L
Sbjct: 125 APFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++    E   + +D  + +LR+K+ + AG   YIET+ G GY  RE
Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGDYAG---YIETIRGVGYRFRE 229


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +       L++  F V     G   ++  + +  D I+LD  L  I G E
Sbjct: 41  RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R ++   P+ +L+ M S ++++ GL++GADDYISKPF+  ELV R+++I+RRS G
Sbjct: 101 VCRRIR-SRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    G+ +++  A ++   G  + LT +E+ ++  L        ++E  L  ++
Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G +  ++  + V + +LR+K+         + TVWG GY L
Sbjct: 220 -GWEFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  IE+ LK+E F +Y +  G+D     +  + +  ILD+ L DI GF
Sbjct: 13  MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 73  TLCQRIR-ENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L +++D     +   +I LT KE+ ++ +L   +   ++ E 
Sbjct: 132 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 191

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + ++ D         + V I  LR+K+  +A    YI+TVWG GY
Sbjct: 192 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 238


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD A++  + + L+   + V+    G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +T  PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V +  LR KL        YI+TV+G GY L     +ET E
Sbjct: 183 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNSEETAE 239


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61
           IL+++D+  L   +++ L +  + V     G+  IE+ +   +D +ILD+ L   + GFE
Sbjct: 6   ILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+G +  +D++RG  +GADDY++KPF+ EEL+ R++AI+RRS  
Sbjct: 66  VCKRIREFS-DIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSHP 124

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +   GDL +N   K V V+G  + LT  EYQ++  L       +T E  L  
Sbjct: 125 SEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLTR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E+  +  +I  LRKK+ +  G   YI    G GY L
Sbjct: 185 VWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228


>gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
 gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     Q+L V  DL +++  +     G  + LT KEY ++ELL  +    L++    
Sbjct: 121 AAQVVASPQTLRV-ADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++D   + +  +IDV + +LR K+ +    +  I TV G GY L E+
Sbjct: 180 SLVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227


>gi|320547404|ref|ZP_08041692.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320447949|gb|EFW88704.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/228 (38%), Positives = 134/228 (58%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E ++V V   G  G++     +FD I+LDL L D+ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR+ K  T + +++   SI D V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 64  ITRRLRLEK-ETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQEA 122

Query: 122 HA----QSLIVTGDLSVNLDAKT-VEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++    +     G L + L+ +    V+G   I LT +EY ++ +L    N  +T+E  L
Sbjct: 123 NSEHDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++    + E  ++DV+I  LR K+ +  G ++YI+TV G GY++RE
Sbjct: 183 ASVWRYDTDIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYIIRE 229


>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V       + +        D ++LD+ L D+ GFE
Sbjct: 4   RLLVVDDEATVRELLSAALRFAGFRVTSAATAREAVAAATAEPPDLVLLDVMLPDMDGFE 63

Query: 62  VLRALRVAK----ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V+R LR          PV  L+      DKV GL  GADDY++KPF+  EL+ARIRAI+R
Sbjct: 64  VVRRLRERHPGHGAPVPVLFLTARDRQSDKVTGLSLGADDYVTKPFDLAELIARIRAILR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G    ++  G L+++ +   V   G  I L+  E++++  L       ++K   L+ 
Sbjct: 124 RTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSATEFRLLRYLMENAGRVVSKGQILDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  I+D +I  LR+K+  A      I TV G GYVLRE
Sbjct: 184 VWRDDFGGDAGIVDTYISYLRRKVDTAE--PKLIHTVHGVGYVLRE 227


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+V +   G   +E       D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQDA 122

Query: 119 SRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S  HA     + ++  G + ++++  TV V G  + +  KE+ ++E L       LT+  
Sbjct: 123 SSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + +LR K+         + TV G GY
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGY 228


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++LA  ++  L+ E + V     G + + L    EFD IILDL L  + G+E
Sbjct: 8   RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  ++ +D+++GL++GADDY++KPF+ +EL+ R++ +++R + 
Sbjct: 68  VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQW 127

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      + ++  G+ +VN      + +     LT +E  +++ L   +   ++++  L 
Sbjct: 128 YQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++      + + +D FI +LRK          +I +V   GY
Sbjct: 188 NVWQVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGY 230


>gi|167574670|ref|ZP_02367544.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 219

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L  ++ + ++ +     +V +L  D         +D I+LDL L D  G
Sbjct: 1   MRVLLVEDDPWLGEAVRVQIEKDGHPADFVGNLA-DARRHIAVATYDLILLDLLLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  G+L+++    +V+    R+ LT  E+ ++E L       L+K      LY
Sbjct: 120 SGNPNPLVKLGELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              DE     I+V + +LRKKL     G + IETV G GY LR +
Sbjct: 180 SFNDEVGSNTIEVHVSRLRKKL-----GADMIETVRGLGYRLRRD 219


>gi|332639095|ref|ZP_08417958.1| two component transcriptional regulator, winged helix family
           protein [Weissella cibaria KACC 11862]
          Length = 220

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 123/219 (56%), Gaps = 7/219 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R LLI DD    + +  M     +++     GE+ + +    + D ++LD+ L  + G++
Sbjct: 3   RTLLIVDDSVRINQLVKMSLQSLYDIRQAYTGEEAVAILAAAKIDLVLLDITLPGMSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +  A++  PV  L+  + ++D V+GLQ GADDYI+KPF+ E L AR+  ++RR+ G
Sbjct: 63  VLPYVIDAQV--PVIFLTAKTEVDDVVQGLQLGADDYITKPFHLEVLKARVETVLRRTDG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G+L+VN+  +TV+  G  I LT KE++++      +   LT++     L+D 
Sbjct: 121 QTDEILHYGELTVNVPQQTVQRDGQTIDLTHKEFELLVYFIRNQGVNLTRDALYQALWDF 180

Query: 182 RDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D+  + + +D+ + +LRKKL  A    + I TV+  GY
Sbjct: 181 ADDANDTRTVDLHVQRLRKKLQLA----DDIVTVFKVGY 215


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           ++L+I+DDK L   ++  ++ EN +      G +G+++ K  +    F  IILD+ +  +
Sbjct: 3   QVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMPYM 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL+ +R    + PV +L+  S+ EDKV GL+ GADDY++KPF+  EL AR+ +++R
Sbjct: 63  DGFQVLKKIREVS-NIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIR 121

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R      +       I   D++++   ++V V+G  + LTGKE+ ++  L+  K    TK
Sbjct: 122 RYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTK 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +++     +   I  FI KLRKK+        Y+ TV G GY   + A
Sbjct: 182 KQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 130/219 (59%), Gaps = 8/219 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   ++L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    L ++  A+ V V+G +++LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPSSNDI----LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +D  I  LR+KL      ++ I+TV G GY
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDCIKTVRGYGY 211


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +A  + L L+ E + +     G+  +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + E     ++  I +LR K+       + I TVWG+GY
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGY 227


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 14/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L+   F       G   + L +    D ++LDL L DI G +
Sbjct: 4   RILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDIDGAD 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + RA+R      + P+ +L+      D++ GL+ GADDYI+KPFN  E+VAR+RA++RR+
Sbjct: 64  LTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL-LSLRKNTTLTKEMF- 174
            G       L+  G + ++ D   V V G  ++LT  E+ ++ + LSL  +    +E+  
Sbjct: 124 SGGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELIE 183

Query: 175 --LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + + Y+G +    + ID  I  LR+KL +   G   IETV+G GY L+
Sbjct: 184 EGVGYEYEGME----RTIDSHIKNLRRKLESVDAGIR-IETVYGVGYRLK 228


>gi|121606713|ref|YP_984042.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595682|gb|ABM39121.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 255

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+DD  LA  +  +L  +   +        G+      + D ++LDL L D  G +V
Sbjct: 31  VLMIDDDAELAGMVGELLLGQGMQLRSAATAALGLAALAQRQPDVLLLDLMLPDANGLDV 90

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +    PV +L+      D+V GL+ GADDY+ KPF+  ELVARIRA+ RR +  
Sbjct: 91  CRRLRESGNDLPVLMLTARGDPFDRVLGLELGADDYLGKPFDPRELVARIRALARRGQSA 150

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S  +    LS++L A+        + LT  E++++  L+ +   ++++E     +  G
Sbjct: 151 RRSTQLRFNGLSLDLLARRATCPAGALALTSSEFKLLLALASQPGASVSREALCAAVQPG 210

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              P  + +DV + +LRKKL+ AAG + +IETV G GYV 
Sbjct: 211 SYMPLDRAVDVQVARLRKKLA-AAGEREWIETVRGEGYVF 249


>gi|319791294|ref|YP_004152934.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593757|gb|ADU34823.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD  +A  ++  L +E + V +   G +G+ L +  +   ++LDL L  + G 
Sbjct: 1   MNILVVEDDARVADFLQRGLGAEGYRVQLARTGPEGLALARGSDLSLLLLDLMLPGLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + LR      PV +L+ +S+ +DKV GL+ GADDY++KPF  EEL+ARI A++RR  
Sbjct: 61  ELCQTLRAEGHHVPVLMLTALSNTQDKVSGLRLGADDYLTKPFAFEELLARIEALLRRGR 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  A +L V  DL ++ +  +V   G  + LT KE   +ELL        ++E  L++
Sbjct: 121 EMRPRATTLQV-ADLVLDRERMSVTRAGKPVALTAKELAFLELLMTAPGRVYSRERILSN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   ++P   I+DV++ +LR K+ +       ++TV G GY L
Sbjct: 180 VWGTNEDPLTNIVDVYVRRLRGKIDDGH-PVALLQTVRGLGYRL 222


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V+    G + +E  +  + + I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A          I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 123 VAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +IE+ LK+E++ VY    G + + +   YE   +I+D+ +  + G 
Sbjct: 1   MNILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEALLVFDNYEIHLVIIDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
                +R  K + PV +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++++RR  
Sbjct: 61  RATMKIR-EKYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYV 119

Query: 119 SRGH--AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           S G   AQS +  TG L ++ DAK V++    + LT  EY++++ L        + +   
Sbjct: 120 SLGSFVAQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I ++R+K+        Y++ VWG GY
Sbjct: 180 EQVWNEPSFSPENTVAVHIRRIREKIEINPKDPKYLKVVWGIGY 223


>gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           2457T]
 gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           301]
 gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073]
 gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82]
 gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
 gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218]
 gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272]
 gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei DM98]
 gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 14]
 gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 91]
 gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 9]
 gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei B7210]
 gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 7894]
 gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 112]
 gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei BCC215]
 gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
 gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG+ I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  ++D  I ++R K+      K  I TV G GYVL +  + E CE
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQDYEPK-LIHTVRGMGYVLEQ--RGEPCE 227


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G +          D ++LD+ L D  G E
Sbjct: 7   RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R   +  PV  L+      DK+ GL  G DDY++KPF+ +ELVARIRA++RR+R 
Sbjct: 67  LCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTRR 126

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +   DL+++    +V   G  + L   EY+++  L +  N  L++E  L+
Sbjct: 127 EQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D        ++D ++  LR+KL  A  G   I T  G GY LR+ 
Sbjct: 187 AVWDTDYRGGATVVDQYVSYLRRKL--APYGPPLIHTQRGFGYALRDG 232


>gi|149194607|ref|ZP_01871703.1| DNA-binding response regulator [Caminibacter mediatlanticus TB-2]
 gi|149135351|gb|EDM23831.1| DNA-binding response regulator [Caminibacter mediatlanticus TB-2]
          Length = 215

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 8/218 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD  +   I   LK+  F V  TD   + +++ K YE   IILDL L  + GF+
Sbjct: 3   KILLIEDDLEMQEEISEYLKNFGFEVDFTDNPIEALKIFKNYEL--IILDLMLPKMDGFD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ ++ + I  PV I S    I +K+ G + GADDY++KP+   ELV RI A+++R   
Sbjct: 61  VLKEIKKSDI--PVIISSARGDIGNKITGFELGADDYLAKPYEPRELVLRINALLKRKNS 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++I   D +++ + + V++  + I  T  EY++   L   +   +++E  L H    
Sbjct: 119 ---TIIKISDFTIDKEKREVKIDNYPIPFTQIEYEIFYYLIKNRGKVISREQIL-HSTSL 174

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + + + ID+ I  +R K+ +      YI++VWG GY
Sbjct: 175 HPDTQNRTIDMHISNIRHKIGDEPKNPKYIKSVWGIGY 212


>gi|317497206|ref|ZP_07955530.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895451|gb|EFV17609.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 237

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ ED++ + + I  +LK+  +   +   G   I+  + Y  D I+LDLGL D+ G +V
Sbjct: 8   VLIAEDEENIGNFISTILKTNGYKPIIATTGNQAIQCAESYCPDVILLDLGLPDMDGIDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   + TP+ ++S  +   +KV+ L +GADDYI+KPF  +EL+ARIR  +R  R  
Sbjct: 68  ISEIRKWAV-TPIIVISARNRESEKVKALDAGADDYITKPFGNQELLARIRTALRHRRQP 126

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   T     G L ++ D + V +    I LT  EY+++ LL+      +T E  +  
Sbjct: 127 MGAETKTPMYHAGQLKIDFDKRRVFLGEEEIRLTQIEYKLVSLLAENAGKVITYESIIKD 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +   +I+ V +  +R+K+        Y+ T  G GY + EN
Sbjct: 187 IWGPHADTNNRILRVNMANIRRKIEKNPAVPKYVFTEVGVGYRMLEN 233


>gi|255531237|ref|YP_003091609.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344221|gb|ACU03547.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 224

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN---VYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M++LL+ED+  L   +E   +S  F+          ED I   ++   D ++LD+ L D 
Sbjct: 1   MKLLLVEDEPVLVEEMEQYFRSHGFSCDQAVSFSQAEDKILNSRY---DVVVLDITLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +++  +R     T + ILS  +S+ DK+ GL  GADDY++KPF  EEL ARI A+ R
Sbjct: 58  TGMDLIADIRQRDAETGIVILSARNSLSDKLEGLDLGADDYLTKPFFLEELSARINALYR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        I+  D ++   AK     G  + LT KE++M+    + KN  L+K     H
Sbjct: 118 RKTLRGTVEILFDDFTIEPLAKLFFYLGEPVSLTKKEFEMLVYFVVNKNRVLSKASISEH 177

Query: 178 LYDGRDEPEVKIIDVF--ICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+    +  V    ++  +  LRKKL+  + GK+YI+TV+G GY
Sbjct: 178 LWGDHFDQHVNFDTLYMHLTNLRKKLTRLS-GKHYIKTVYGIGY 220


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L+ + + V     G + ++  +    D ++LDL + ++ GFE
Sbjct: 6   KILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPEMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    +TPV IL+    +EDK  G   G DDY++KPF+  EL  R++A++RR  G
Sbjct: 66  VCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVSG 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G L +N   + V + G  ++LT KE+ ++ +L+       +++  L
Sbjct: 126 EELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      +   + V I ++R+K+        Y+ TVWG GY
Sbjct: 186 DMVWGNEYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGY 229


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +  +L+ E F V +   G++ +      E D ++LDL L  + G EV
Sbjct: 4   VLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+ K S PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR R H
Sbjct: 64  CKNIRL-KSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGR-H 121

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             S         ++  G + ++++   V V G  + +  KE+ ++E L   +   LT+  
Sbjct: 122 DDSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV I +LR K+        ++ TV G GY
Sbjct: 182 LIDRVWGSDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGY 227


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   + + LK + F V   + G + +++ + +  DA ILD+ +  + GF
Sbjct: 14  IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + +PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 74  ELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 133

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL++N +   V   G  I L+  E+ ++  L L     L+K   L++
Sbjct: 134 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 194 VWHYDFGGDGNVVESYISYLRRKVDTQE--PQLIQTVRGVGYVLR 236


>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
 gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
          Length = 229

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +   +E+ L    +       GE G+ L    ++D I+LDL L  + G E
Sbjct: 3   QILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR+ K +TPV +L+  S   D+V GL+ GADDY++KPF+  EL+ARI+A++RRS  
Sbjct: 63  VCKKLRIKK-NTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRRSDA 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 ++ +L   G L +++D + V     +I L+ KE++++ L++       ++   L
Sbjct: 122 PKVEENNSTTLNFEG-LFIDIDKRKVLHNKQKIDLSPKEFELLVLMASNPGRNYSRTELL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++    E     ++  I +LR K+ +      YI T WG GY   E
Sbjct: 181 NIIWGYNFEGYEHTVNSHINRLRAKIESNMAQPMYILTTWGVGYKFNE 228


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A SI   L +E F V V   G   ++    ++ D ++LD+ L    G E
Sbjct: 19  RVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLPGFDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 79  VCRRIQ-AQRPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRRVER 137

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A   +  G+L ++   + V +    +HLT  E+ ++  L+ +    LT+E  
Sbjct: 138 AQQAARTPALGSLRFGELEIDHVQRRVRLGSGDVHLTPTEFDLLACLAAQPRAVLTREQL 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR+K+     G ++I TV G GY L
Sbjct: 198 LAEVWDWTDASGTRTVDSHVKALRRKI-----GASWIRTVHGVGYAL 239


>gi|285018543|ref|YP_003376254.1| two-component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473761|emb|CBA16264.1| probable two-component system regulatory protein [Xanthomonas
           albilineans]
          Length = 234

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTD-LGEDGIELCKFYEFDAIILDLGLTDIP 58
           MRIL+ EDD ++A ++ + +++  +   +V+D    D   L + Y    ++LDLGL    
Sbjct: 1   MRILVAEDDTSIAVALRDSLVECGHVVDHVSDGTAADHALLAESYHL--LVLDLGLPRQD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ LR  +   PV +++   ++ED++  L  GADDY+ KPF   E +AR RA++RR
Sbjct: 59  GLQVLQRLRERRDEIPVLVVTARDAVEDRIHALDQGADDYLIKPFELSEFLARTRALLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S       +V G L +NL  + V +Q   + LT +E+ ++E L LR    +++      L
Sbjct: 119 SSSGGVPELVLGQLRINLAGRRVWLQDQPLDLTAREFALLETLLLRSGRVVSRGQLTEAL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D + E     +D+ + +LR+KL     G   I T+ G GY+L E+
Sbjct: 179 CDWQHEITDNGLDISMHRLRRKLHGTGVG---IRTIRGLGYMLEES 221


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           ++L+I+DDK L   ++  ++ EN +      G +G+++ K  +    F  IILD+ +  +
Sbjct: 3   QVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMPYM 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL+ +R    + PV +L+  S+ EDKV GL+ GADDY++KPF+  EL AR+ +++R
Sbjct: 63  NGFQVLKKIREVS-NIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSLIR 121

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R      +       I   D++++   ++V V+G  + LTGKE+ ++  L+  K    TK
Sbjct: 122 RYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIFTK 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +++     +   I  FI KLRKK+        Y+ TV G GY   + A
Sbjct: 182 KQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  IE+ LK+E F +Y +  G+D     +  + +  ILD+ L DI GF
Sbjct: 3   MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  TLCQRIR-ENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L +++D     +   +I LT KE+ ++ +L   +   ++ E 
Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + ++ D         + V I  LR+K+  +A    YI+TVWG GY
Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD AL     ++L SE + V   + G + +E     E D ++LD+ +  + GFE
Sbjct: 4   KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           VL+ +R  +   PV +L+  S   DKV GL+ GADDYI+KPF+ +EL+ARI+AI+    R
Sbjct: 64  VLKKIR-ERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G    ++  G L ++ +A TV   G  + LT  E++++ LL  R     T+      
Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  G      + IDV I +LR K+         I+TV   GY
Sbjct: 183 VSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGY 224


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +A  +E  L  E ++V V   G       +   FD I+LD+ L    G 
Sbjct: 2   IRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A + TP+ +L+  +   +KV GL+ GADDY++KPF  +EL ARI+A++RR+ 
Sbjct: 62  EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G       + GD+ V+     + ++G  + LT  E++++++    +   L+++  +   +
Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            GRD     +I+D  I  LR+K+ +      Y+  V G GY
Sbjct: 182 -GRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGY 221


>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 249

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 27/247 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGIDGLQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 65  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGNA 124

Query: 120 ----------------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
                                 RG    L V G L +++ A+        + LT  E+ +
Sbjct: 125 GYGGAPAAPAAPGSARPAGPAERGGGGQLAVAG-LRMDVQARRAWRGERELELTRTEFDL 183

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +ELL+      L      + ++     P  K + V++  LR+KL +A G    I TV G 
Sbjct: 184 LELLARNSGIVLDHTTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DAPGAPALIHTVRGV 242

Query: 218 GYVLREN 224
           GYVLRE+
Sbjct: 243 GYVLRED 249


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E       D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLR-QRGNVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++++   V V+G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I +LR K+   +     I TV G GY
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGY 222


>gi|259501353|ref|ZP_05744255.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302190926|ref|ZP_07267180.1| two-component system response regulator [Lactobacillus iners AB-1]
 gi|259167206|gb|EEW51701.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
          Length = 245

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           +++L+++DDK +   + + LK+EN++  V   G +   L KF        IILD+ + ++
Sbjct: 18  VKVLVVDDDKEIVELLSIYLKNENYDPIVACDGREA--LTKFRMDPSITCIILDIMMPEM 75

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + ++ +R      P+ ++S  +   DK++GL +GADDY++KPFN  E++ARIR+++R
Sbjct: 76  SGLDFIKEVR-KDSEVPILVVSARTKDLDKIQGLLTGADDYVTKPFNPLEVMARIRSLIR 134

Query: 118 RSRGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RS  +  S    LI  G L +N D+  V+ + G +I+LT  E+ ++ LL+       +  
Sbjct: 135 RSEKNIVSDMPDLIEVGPLVINKDSHVVKTLTGVKINLTVLEFGILYLLASHPGRVFSAN 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++        K + V +  LR K+  A  G   ++TVWG GY
Sbjct: 195 EIFERVWKQESIVSTKTVMVHVSHLRDKIQEATAGSEVVQTVWGVGY 241


>gi|167765983|ref|ZP_02438036.1| hypothetical protein CLOSS21_00474 [Clostridium sp. SS2/1]
 gi|167712340|gb|EDS22919.1| hypothetical protein CLOSS21_00474 [Clostridium sp. SS2/1]
 gi|291558777|emb|CBL37577.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 237

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ ED++ + + I  +LK+  +   +   G   I+  + Y  D I+LDLGL D+ G +V
Sbjct: 8   VLIAEDEENIGNFISAILKTNGYKPIIATTGNQAIQCAESYCPDVILLDLGLPDMDGIDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   + TP+ ++S  +   +KV+ L +GADDYI+KPF  +EL+ARIR  +R  R  
Sbjct: 68  ISEIRKWAV-TPIIVISARNRESEKVKALDAGADDYITKPFGNQELLARIRTALRHRRQP 126

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   T     G L ++ D + V +    I LT  EY+++ LL+      +T E  +  
Sbjct: 127 MGAETKTPMYHAGQLKIDFDKRRVFLGEEEIRLTQIEYKLVSLLAENAGKVITYESIIKD 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +   +I+ V +  +R+K+        Y+ T  G GY + EN
Sbjct: 187 IWGPHADTNNRILRVNMANIRRKIEKNPAVPKYVFTEVGVGYRMLEN 233


>gi|148263293|ref|YP_001229999.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396793|gb|ABQ25426.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 235

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L +  F+++  + G   +      + D I+LDLGL D+ G E
Sbjct: 12  RILVVDDEMAIQRFLRTALDTGEFSLHQAENGHAALAAAVAIKPDVILLDLGLPDMDGVE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV+ L +GADDY++KPF   EL ARIR  +RRS  
Sbjct: 72  VIRRIREWS-QVPILVLSVREREDDKVKALDAGADDYLTKPFGIGELTARIRVTLRRSMQ 130

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +    +L V+L  + V V+G  + LT  EY+++ LL       LT    L  ++ 
Sbjct: 131 QVPEPVYRINELEVDLPRRRVTVRGEEVQLTPTEYELLRLLVTHAGKVLTHSQILRQIWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  ++ V I  LR K+        YI T  G GY LR+  
Sbjct: 191 VAYVEQPHVLRVNISNLRHKIETDPSRPRYILTEPGVGYRLRDTP 235


>gi|332535140|ref|ZP_08410949.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035410|gb|EGI71909.1| two component transcriptional regulator, winged helix family
           protein [Pseudoalteromonas haloplanktis ANT/505]
          Length = 227

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LL+EDD  LA +I   L+ E+        G  G+ L +  ++  IILD+ +  + G 
Sbjct: 2   INVLLVEDDIDLATTIVDYLEIESIECDHASNGVMGLNLIERNQYQMIILDVNMPKMDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + ++LR   I  PV +L+   S+++K+ G  +G+DDY+ KPF  +ELVAR++ + +R  
Sbjct: 62  TMCKSLREQGIDIPVLMLTARDSLDNKLEGFAAGSDDYLVKPFAMKELVARVQVLAKRKS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + L    +L++NL A T  V  H + L+   ++++E+L   +   +T+++ +  ++ 
Sbjct: 122 GEVKRLTF-ANLTLNLTAHTATVAAHSLKLSPITFKLLEVLVREQQKPVTRQVIMQAIW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G D+P+   + V I  LRK+L   A  +  +ET+   G+ L+   K+ET
Sbjct: 180 GDDQPDSNSLKVHIHHLRKQLEQ-AHCQAVLETIPSVGFALK--LKNET 225


>gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
          Length = 224

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ +     ++ IILD+ L +I G+
Sbjct: 1   MRILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDLPEIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL ++R     TPV +L+    + DK++G  SGADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  GVLASIR-RNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGE 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  A  ++   DL ++         G RI LT KE+ ++ LL  R    L++   ++ ++
Sbjct: 120 QVSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFENK-LIHTLRGVGYVL 220


>gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  + +V  QG  I L  +E++++E L       +T+ M L +++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKD 227
           D   +P+  +IDV + +LR K+         + T+ G GY+++ E A D
Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDERAAD 232


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  IE+ L +E + V   D G D + +    + D ++LD+ +  + G EV
Sbjct: 6   ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            RA+R  + + P+ +LS  S   DK+ GL++GADDY++KPFN  ELVAR++A +RR    
Sbjct: 66  CRAIRRER-NVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYLSL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G L ++   ++V   G  I LT  E+ ++ LL+       + E  
Sbjct: 125 NPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSEEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I +LR+K+ +       I TVWG GY
Sbjct: 185 FERVWKEHYFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGY 229


>gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 246

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L+EDD +LA      L    + V + + G+  +EL +    + ++LD+ L    GF+V
Sbjct: 14  IMLVEDDMSLAEWFGDYLTEHGYLVTLVNRGDAAVELIRTDLPELVVLDIMLPVKDGFDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R A    P+ +++      D++ GL+ GADDY++KP     L++RI+A++RRS   
Sbjct: 74  CKEAR-AFYQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNTP 132

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            Q          LI  G L ++  ++ V++ G  I ++  E+ ++  L+      +++  
Sbjct: 133 NQPNAETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRTE 192

Query: 174 FLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             N L    YDG D    + ID+FI +LRKKL + A     I+TVWG+GY+L  +A
Sbjct: 193 LFNQLRGSEYDGFD----RSIDIFISRLRKKLGDDANHPYRIKTVWGKGYLLAADA 244


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+ A+   I + LK   + V   + G + ++  +   FD ++LD+ + ++ GF 
Sbjct: 3   KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V    R       + +L+  +  EDKV GL  GADDYI+KPF+  EL+ARI++++RR   
Sbjct: 63  VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R      +V+G   ++L AK V+  G  + +T  EY ++      ++  ++++  L+ 
Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV I +LR+K+        +IET+WG GY  R
Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWR 227


>gi|315659913|ref|ZP_07912772.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315495201|gb|EFU83537.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 233

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+ H I++ L    + V     G+D     +    D I+LDLGL DI GF +
Sbjct: 6   LLVVEDDAAILHLIDVTLTMNYYKVITARNGKDAAFRIRTEHPDVILLDLGLPDIDGFTL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R   I TP+ ++S  +  +  V  L  GA+DY+ KPFN +EL ARIR  +R S+  
Sbjct: 66  IKQIR-TDIDTPIIVISARTEEQTIVNALDCGANDYMIKPFNVDELQARIRVALRVSKKT 124

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++    G L+V+ +AK V +    IHLT  E+Q++++LS      LT ++ L  ++ 
Sbjct: 125 TTEENNFKNGPLTVDFNAKMVYINDQPIHLTPNEFQLLKILSHHVGKVLTYQVLLKSIFG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLRE 223
             ++ E+  + V +  LRKKL+    +A   K  I T    GY ++ 
Sbjct: 185 YVNKCEMASLRVHMASLRKKLNYSEDDAHMDKKLIITHPRIGYQMQH 231


>gi|152988285|ref|YP_001348119.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150963443|gb|ABR85468.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   L +   FD ++LDLGL D  G 
Sbjct: 1   MHVLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR      PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  + RRS 
Sbjct: 61  RLLQRLRQQGFDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   + G  I L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRCVNVIEHGRLSYDPSTRETWLDGRPIELSRREQALLQALLNNRGRILSGEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL NA      ++TV G GY L
Sbjct: 181 FGDEVESNALNVHIHHLRRKLGNA-----IVQTVRGLGYRL 216


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E + V V + G D +        D ++LDL L  + G +
Sbjct: 3   RILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLSGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR  + + PV +L+   S  DKV GL+ GADDY++KP++  EL+ARI+A++RR   
Sbjct: 63  VCRALR-QRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + L  T   G + ++++   V V G    L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+        +I TV G GY
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGY 222


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A  ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+ +      ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKL 226


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +    +S  F V     G +G+E+    +   ++LDL L  + G +
Sbjct: 5   RILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGMSGLD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+    +   PV +L+      D++ GL+ GADDY+ KPF+  ELV RIRA+++R+
Sbjct: 65  VCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKRA 124

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +G A+    S      L+++LDA  VEV G    LT  E++++  L   +    T++  L
Sbjct: 125 QGVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           N ++    E   + +D  + +LR+K+   A     IET+ G GY  +E 
Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGGYAA---MIETIRGVGYRFKEQ 230


>gi|115523953|ref|YP_780864.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517900|gb|ABJ05884.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V DL   GE+G+ L    ++D +++D  L   
Sbjct: 1   MRLLIIEDDR---ESADYLVKAFREVGHVADLAADGEEGLSLADSGDYDVLVIDRMLPKR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 58  DGLSVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 117

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G   ++    GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 118 RHGGPVEETSYKVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  
Sbjct: 178 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMVRDGG 225


>gi|319405330|emb|CBI78948.1| two-component response regulator [Bartonella sp. AR 15-3]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYALAETVNYDVMVIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIVTELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+ +   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRRDKNIMLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLKAPEK 226


>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  L   +   L ++ F +     G DG+ L    + D ++LD+ L DI G E
Sbjct: 4   RVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDCDIVVLDIMLPDISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR A+   PV +L+      D++ G + GADDYI KP N  ELVAR++A++RR   
Sbjct: 64  VLRELR-AETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIAW 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    +    GDL V    + +      + LT  EY+++++L     + + K   +  
Sbjct: 123 DQKTEVNAARTYGDLRVEPGHRRIYQNDVAMELTATEYEVLQVLLAHAGSVVRKTDLMQW 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               R E   + +D+ I  LRKKL N    +  IETV G GY  R
Sbjct: 183 ALGRRLEAYDRTLDMHISNLRKKLGNDDPPR--IETVRGLGYSYR 225


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   + L L+   +       G + I   +   +D I+LD+ + +  G+E
Sbjct: 3   KLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGWE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R  K+S  PV +L+  +   D V+GL+ GADDYISKPF+++EL+ARI A++RRS 
Sbjct: 63  VCRQIR--KMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I    L  +  +  V  Q   + +T KE+ M+ L     N   ++E  L  ++ 
Sbjct: 121 QNQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
              E E + ID  I  +R KL NA     ++++TVWG GY
Sbjct: 181 YEVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGY 220


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 14/228 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++H I++ L    + + V + G +G E+     FD IILD+ L ++ G  
Sbjct: 5   KVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDGIA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR     TP+ +++  S   DKV GL+SGADDYI+KPF   E +AR++AI+RR   
Sbjct: 65  ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
                    D      L ++   + V +   R+ LT KE+ ++ L++     + ++    
Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+   + + G +      ++  I +LR K+       N+I T WG GY
Sbjct: 185 ELIWGYDFSGYEH----TVNAHINRLRAKIEKDPNNPNFILTTWGVGY 228


>gi|295091538|emb|CBK77645.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61
           +LL+EDD +L   ++  L    F+V +    E+    L    ++D +ILD+ L D  GF+
Sbjct: 4   LLLLEDDISLIDGLQYSLNKNGFHVDIARTVEEAKNSLTDINKYDLLILDVTLPDGTGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+  L+      + +RGL  G DDY++KPF   EL +RIRA++RR+  
Sbjct: 64  VCEKVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRALLRRAGV 123

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +Q   +++  GD+S++L A  V + G  + LT  EY+++ LL    N  +++++ LN L
Sbjct: 124 SSQDKTNILKCGDISIDLLASRVLLNGRILELTNAEYRLLCLLVRNANRVVSRDIILNDL 183

Query: 179 YDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DG     +   + V+I +LR+K+   A    ++ TV G GY  +E
Sbjct: 184 WDGTGNFVDDNTLSVYIRRLREKVEIDASHPQHLITVRGFGYQWKE 229


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  ++L    ++  I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RR+  
Sbjct: 67  VCNRLRQVK-ATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKL 234


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAF 235


>gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 245

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  +EL L      V V   G+DG+       +D I+LD+ L    GF+
Sbjct: 8   RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  K  TP+ +++  +   DKV GL+ GADDYI+KPF+  E++AR++A+ RR   
Sbjct: 68  ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127

Query: 119 ---SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              ++G A  + I  G + V  + + V V+G  + LT KE++++ L +       +++  
Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++  +       ++  I +LR K+        Y++TVWG GY   E
Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236


>gi|83747390|ref|ZP_00944430.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551]
 gi|83725977|gb|EAP73115.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551]
          Length = 645

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 128/241 (53%), Gaps = 20/241 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  +   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 411 KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 470

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A    PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 471 VCRRIR-AFSRVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 529

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +  H   ++V G+L+++   +TV  +G  + L   E+ ++ +L+    T L++
Sbjct: 530 ALPAAEPAVPH-DDVLVFGELAISPPNRTVTWRGQLVDLKTAEFNLLLILARAAGTVLSR 588

Query: 172 EMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  L  L    +DG D    + +D  I +LR++  +A+   + I+T+WGRGY+   +A +
Sbjct: 589 DDILKQLRGIEFDGLD----RTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWE 644

Query: 228 E 228
           E
Sbjct: 645 E 645


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+  +I+  L++E F       GE  +        D IILD+GL D+ G E
Sbjct: 4   RVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPDMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +  STPV  L+  +   D+V GL+ GADDY++KPF+  EL AR+RA++RR+  
Sbjct: 64  LCKEIRKSH-STPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTHV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                       VN   + +   G  + L+  EY++++    R     +++  +  +++ 
Sbjct: 123 RDHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWEQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    + +D  I  +R KL   A   + I T  G GY LREN
Sbjct: 183 PETSLDRTVDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R      PV IL+     ED+VRGL+ GADDY+ KPF++ ELV+RIRA++RR    
Sbjct: 69  LRRIRSFS-QVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHYTQ 127

Query: 123 ---AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D LS++   + V V G R++L   EY+++  L       LT EM L+ +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + ++I  LR+K+        YI T  G GY
Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPKYILTERGVGY 228


>gi|296447598|ref|ZP_06889519.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254913|gb|EFH02019.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+ED  + AH +   L    + V       D ++     ++ A +LD  L D  G 
Sbjct: 1   MHILLVEDRNSFAHLVTRHLARSGYTVDHVGTIRDALKALSDRDYSATLLDRKLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ ++  +  T V +L+ M ++ DK+ GL SGADDY+ KPF+ EE++ARIRA +RRS 
Sbjct: 61  SIIKEIKRRRNDTRVLLLTAMDAVGDKIEGLDSGADDYLVKPFDLEEMMARIRACLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++  G LS +  ++T  V+   + L  +E  ++E L  R    +  E  +  ++ 
Sbjct: 121 SEPQPMVTVGALSFDCGSRTAAVRDRPVLLHKRELALLEALVQRAGVVVRHEALIASIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ +   + + + +LR +L     G   I T  G GY+L
Sbjct: 181 VDDDIQPHALTLLVARLRARLEQLDAGVG-IHTARGVGYLL 220


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +   +E+ L +E + V     G++ +++ +  + D ++LD+ +  + G E
Sbjct: 10  KILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K + P+ +LS  S   DK++GL +GADDY++KPFN  E   R++A++RRS  
Sbjct: 70  VCKKVRQNK-NMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      LI  G L+++     V   G  I LT +E+ ++ L++  K    + E  
Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  +       + V I +LR KL     G+  I TVWG GY
Sbjct: 189 FEKVWKEKYFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGY 233


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  ++  L+   +       GE+ ++  + +  + ++LD+ L  I GFEV
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGIDGFEV 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  V     P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+R + Q ++ +G + +++      + G  + LT  E++++ LL  RK    T+E+ L+ 
Sbjct: 126 RNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D       + ID  + +LR+KL +A     +I TV G GY   EN  +
Sbjct: 186 VWDVDKSINTRTIDTHVTRLREKLGDAG---RFIRTVRGLGYKFDENGDN 232


>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++   + L L+ + + V   + GE  +EL +   FD ++LDL L  I GF V
Sbjct: 4   ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R       + +++  +  +DK+ GL  GADDY+ KPF+ +EL  RI +++RR    
Sbjct: 64  CQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRRINVG 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      L+++G+  ++L           + LT  E+ ++  L    N   T++  L+
Sbjct: 124 DEAASKMTDLLISGNFKMDLKNNKFYSSDEIVKLTPTEFSLLHFLMEHPNDLFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E+K++DV I ++R+K+        Y+ T WGRGY+ + N
Sbjct: 184 AVWGENYVGELKVVDVNIRRIRQKIEKDPSSPMYLCTEWGRGYLWKVN 231


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LD+ L  + G +V
Sbjct: 1   MLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR AK S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 61  CKQLR-AKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      ++  G + ++++   V V G  + L  KE+ ++E L       LT+   ++
Sbjct: 120 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + K +DV + +LR K+    G   ++ TV G GY L E
Sbjct: 180 RVWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 226


>gi|297202817|ref|ZP_06920214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148214|gb|EFH28896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPESDGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +      G   + +V G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 120 TAHEDAPGGGDTGLVLGAVRIELPTRQVTVDGTVVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LIETVRGVGYRL 223


>gi|296394075|ref|YP_003658959.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181222|gb|ADG98128.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 241

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  + + L+ E +   V   G   I+L +    D ++LD+ L D+ G E
Sbjct: 17  RVLVVDDEQALAELVSMALRREGWEPAVAFDGAGAIKLARDAAPDVVVLDVMLPDMSGLE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + P+ +L+   ++ED++ GL +G DDY++KPF+ EEL+ R+RA++RR+ G
Sbjct: 77  VLLRLREMYPALPLLLLTAKDAVEDRIAGLTAGGDDYVTKPFSLEELMLRVRALLRRA-G 135

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A     + IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 136 MAGEDSDARIVVGDLVLDEDSHEVSRGGDPIVLTATEFELLRFMMRNAKRVLSKNQILDR 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I+++++  LRKK+      +  I T+ G GYVL+
Sbjct: 196 VWSYDFGGRSNIVELYVSYLRKKIDTER--EPMIHTLRGVGYVLK 238


>gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
 gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
          Length = 228

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVT-DQIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LSPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERLDGKARIKTLRGRGYLM 224


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++   TV  +G  I LT KE +++   +       TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++      +   + V I KLRKK+         I+TVWG GY
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGY 234


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +   ++   + E ++V   + G+ G++L    +   I+LDL L  + G+E+
Sbjct: 7   ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K+  P+ +L+      D V GL+ GADDY++KPF+ +EL+AR+ A +RR R  
Sbjct: 67  CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--YD 180
             ++   GD   +  A+T+   G  + L+ KE+ ++  L       L+++  ++ +  YD
Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R  P  + ID F+  LR K+         ++TV   GY
Sbjct: 187 SRVTP--RSIDRFVNALRNKIEPDPAEPRILKTVREFGY 223


>gi|226195970|ref|ZP_03791556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|225931863|gb|EEH27864.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
          Length = 217

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 5/166 (3%)

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR
Sbjct: 57  GLDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVSAVARR 116

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G+   L+  G+L+V++ A++V   G R+ LT  E+ ++E L       L+K      L
Sbjct: 117 YSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQLEERL 176

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           Y   DE     I+V + +LRKKL     G   IETV G GY LR +
Sbjct: 177 YSFSDEVGSNTIEVHVSRLRKKL-----GAELIETVRGLGYRLRRD 217


>gi|238783795|ref|ZP_04627814.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
 gi|238715346|gb|EEQ07339.1| Two-component response regulator of virulence determinant [Yersinia
           bercovieri ATCC 43970]
          Length = 218

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 7/217 (3%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIPGFEV 62
           +ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL    G  +
Sbjct: 1   MEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGLSL 57

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++RR+ G 
Sbjct: 58  IRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGL 117

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A  +I      ++L  + + V   +I LT  EY +IE L       ++KE  +  LY   
Sbjct: 118 ASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGRVVSKETLMLQLYPDA 177

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  E   IDV + +LRKKL     G+  I T+ G+GY
Sbjct: 178 ELRESHTIDVLMGRLRKKLQAEHEGE-VITTIRGQGY 213


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAF 235


>gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046]
 gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|289549427|ref|YP_003470331.1| DNA-binding response regulator KdpE [Staphylococcus lugdunensis
           HKU09-01]
 gi|289178959|gb|ADC86204.1| DNA-binding response regulator KdpE [Staphylococcus lugdunensis
           HKU09-01]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+ H I++ L    + V     G+D     +    D I+LDLGL DI GF +
Sbjct: 5   LLVVEDDAAILHLIDVTLTMNYYKVITARNGKDAAFRIRTEHPDVILLDLGLPDIDGFTL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R   I TP+ ++S  +  +  V  L  GA+DY+ KPFN +EL ARIR  +R S+  
Sbjct: 65  IKQIR-TDIDTPIIVISARTEEQTIVNALDCGANDYMIKPFNVDELQARIRVALRVSKKT 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++    G L+V+ +AK V +    IHLT  E+Q++++LS      LT ++ L  ++ 
Sbjct: 124 TTEENNFKNGPLTVDFNAKMVYINDQPIHLTPNEFQLLKILSHHVGKVLTYQVLLKSIFG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLRE 223
             ++ E+  + V +  LRKKL+    +A   K  I T    GY ++ 
Sbjct: 184 YVNKCEMASLRVHMASLRKKLNYSEDDAHMDKKLIITHPRIGYQMQH 230


>gi|268319166|ref|YP_003292822.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262397541|emb|CAX66555.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 221

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 117/203 (57%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED++ L+  +   ++S N+ V     G D +EL +   +D IILD+ +  + G 
Sbjct: 1   MKILIAEDEEQLSRVLVAAMQSVNYGVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + ++D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+ A+   V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNV-AEQELVSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             DE    ++ ++I  LR+KL +
Sbjct: 180 DDDEASEDVVWIYISYLRQKLQS 202


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|320533794|ref|ZP_08034390.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133999|gb|EFW26351.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D+  +  S+   L+   + V +   G + ++L   Y+ D I+ D+ +  + G E+
Sbjct: 13  VLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDGREL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R A   TP+ +L+ + +  ++V  L  GADDY+SKPF+  EL +RIRA++RR+RG 
Sbjct: 73  VRRVRAAGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           AQ L     ++ G+L +   ++ V + G  + LT K   +++ L         +E  L  
Sbjct: 133 AQPLTSAPRLMAGELVLERTSRRVTLAGREVTLTPKATMLLDYLMSHPGELHAREELLAS 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+        + +D  + ++R+ L + A    YIETV   GY  R   +
Sbjct: 193 LWGIDFATSTRAVDHRVREIRQALGDDAAHPTYIETVPSVGYRFRAEVR 241


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+   I   L +      +   G++ +EL +  ++DA++LD+ +  + GF 
Sbjct: 3   RILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDGFG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R  + S P+  L+ +   E+ +RG   GADDY++KPF+   L+A+++A++RRSRG
Sbjct: 63  VCRAVR-RQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +++ G + V+  A+     G  I L+ +EY+++  L   +   L++   L+ ++ 
Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E + + +DV +  LR  L  A  GK  I+TV+  GY L E 
Sbjct: 182 LDFEGDDRAVDVRVRSLRAALGKA--GKQ-IKTVFKAGYRLEEG 222


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + L +E +  V   D  E   ++    + + +ILD+ + ++ G
Sbjct: 1   MKILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK+RGL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELR-KESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  A S    ++    L +N D+  V+ + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  I+TVWG GY
Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGY 224


>gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
 gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 127/231 (54%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  +EL L++E ++V     G++ +E  +    D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVMLPDIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +LR +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 60  TILRKIR-EKYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYT 118

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE- 172
                 +  ++++I    L +N ++         + LT  E++++ +L   +   ++ + 
Sbjct: 119 QYNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQR 178

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +F    ++   +     + V I  LR+KLS   G  + I+TVWG GY + E
Sbjct: 179 LFEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIEE 229


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ EN+ +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TPV +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGIREKK-ATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  +   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGY 231


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++++   ++L+L  E F  V     GE  +   K + +D I+LD+ L D+ G+
Sbjct: 5   RILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDIMLPDMTGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ +A+R      P+  LS  +S  DK+ G   G DDYI+KPFN  E+VARI+  + R  
Sbjct: 65  EICQAIR-KTTDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + ++  G  ++NL +  + V G  + L+G+ Y ++       N   TKE    
Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H++      +   + V I KLR+K+        YI+TV G GY L   A ++
Sbjct: 184 HVWKDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKLVPAAGNQ 235


>gi|256825944|ref|YP_003149904.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689337|gb|ACV07139.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  I+  L++  +   V   G  G+ L     FD ++LDLGL  + G ++
Sbjct: 4   ILIIEDNDRIASFIDKGLRAAGYQTEVVGDGRTGLTLAMHGGFDLVVLDLGLPGMDGTDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  LR   +S PV +L+   ++ED V  L+ GA+DY++KPF   EL+AR+R  +  +   
Sbjct: 64  LENLRGQGVSVPVVVLTARDTVEDTVSALEGGANDYMTKPFQFAELLARVRVRLADTTEV 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH--LTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+  +V     + LD +T EV+G  +   LT +E+ ++          L+++  L  +
Sbjct: 124 PTAKDGMVVEAGGLALDHRTREVRGDGVQTSLTSREFGLLATFMRHPGQVLSRQQLLAEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   ++DV + +LR K+     G ++IETV G GY  R
Sbjct: 184 WGVDHDPHSNVVDVCVRQLRTKV-----GSDHIETVRGVGYRFR 222


>gi|225017481|ref|ZP_03706673.1| hypothetical protein CLOSTMETH_01408 [Clostridium methylpentosum
           DSM 5476]
 gi|224949720|gb|EEG30929.1| hypothetical protein CLOSTMETH_01408 [Clostridium methylpentosum
           DSM 5476]
          Length = 233

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 127/221 (57%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD A+A+ I + L    ++      G     L +   +D I+LD+ L +I G+
Sbjct: 16  IKILIVEDDAAIANLIRVSLTDAGYSCQNAPDGITASNLIERNRYDLILLDIMLPEINGY 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  +R     TPV  L+  S + ++V+GL  GA+DYI+KPF   EL+ARI  ++RR  
Sbjct: 76  ELMEYIRPT--GTPVIFLTARSEVRERVKGLHLGAEDYITKPFEIIELLARIEVVLRRYN 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++  G++ ++ +++ V   G +I LT KEY+++ L    KN  L +E+    +++
Sbjct: 134 KFSR-MLTEGEVQIDTESRLVHKNGKKIDLTIKEYELLLLFVRNKNIALFREVIFERVWE 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + +D+ + +LRKKL    G +  I++V+  GY L
Sbjct: 193 SDYLGDSRTVDLHVQRLRKKL----GWEKKIKSVYKVGYRL 229


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++ + V V   G +G+       FD ++LD+ + ++ GFEV
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            + +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  AKMIR-SQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDN 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++  
Sbjct: 125 NVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKVDE 221


>gi|331088816|ref|ZP_08337726.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407339|gb|EGG86842.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L    + V V + GE+ +++     +D I+LDL L  + G 
Sbjct: 1   MRLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S I DK+ GL +GA+DY+ KPF+ +EL AR+R++ RR  
Sbjct: 61  EILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    +  ++  +    + + + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     I V +  LR+KL  A  G + I    G GY +  ++K
Sbjct: 181 SSVDSFSGSIRVHMSSLRRKLK-AGLGYDPIVNRIGEGYKIGGDSK 225


>gi|331701207|ref|YP_004398166.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128550|gb|AEB73103.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 242

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 22/236 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE----FDAIILDLGLT 55
           M++L+IED+K+++  +++  + E ++V +     DGIE + KF E    +D I LDL L 
Sbjct: 1   MKLLMIEDNKSVSEMMQMFFQKEGWDVTI---AYDGIEAMDKFNEDPDSWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R    + P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+
Sbjct: 58  KKDGMEVAKEIRAKSQTVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKAL 117

Query: 116 VRRSRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163
            RR+    +             + T    +N   + V +   RI  LT KE+++++ L+ 
Sbjct: 118 QRRAHTETEEESEDEKAKNVFDVQTDHFKLNSSTREVYLDDKRISDLTPKEFELLKTLAQ 177

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     ++E  L  +++     + + +D  + KLR+K+     G   I+TVWG GY
Sbjct: 178 KPRQVFSREQLLETVWNYEYYGDERTVDAHVKKLRQKIEKV--GTQVIQTVWGVGY 231


>gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 236

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 127/233 (54%), Gaps = 19/233 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++IL++EDD ++A  +++    E + V   D+ +DG+E  + ++     +D + LDL L 
Sbjct: 2   LKILMVEDDNSVAEMMKMFFSKEQWEV---DIAKDGVEAVEMFKAHPDSYDIVTLDLNLP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+
Sbjct: 59  KKDGMEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKAL 118

Query: 116 VRRSR----GHAQS----LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
            RRS      HA +     ++T  L ++ D + V    + +  LT KE+ ++  ++ +  
Sbjct: 119 YRRSHIEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPK 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY
Sbjct: 179 QVFSRDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGY 229


>gi|226315214|ref|YP_002775110.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098164|dbj|BAH46606.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 225

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +A  +++ L    + V   +   + I     ++ D ++LDL L D  G +
Sbjct: 3   RILLIEDEMPIARLVQVYLGRAGYEVKWNEGNHEAIPTFLSWKPDLVLLDLMLPDHDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R    S PV I++   ++ DK++GL  GADDYI+KPF+ EE++AR++A++RRS  
Sbjct: 63  ILDQIRQYG-SCPVIIITARGTVPDKLQGLAQGADDYIAKPFDPEEVLARVQAVLRRSSY 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +++  I  G LS+++ A+   +    + L  +++Q++  L+   N   +++  L+ ++ 
Sbjct: 122 ISEADTIRLGTLSIDVTAQNALIGKTPLALMPRDWQLLVFLARHPNQCFSRDQLLDQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  + +LRK L      +  I T+ G GY LR
Sbjct: 182 MDFEGGDRSVDTAVKRLRKSLLPWPTSEGEISTIRGMGYSLR 223


>gi|169795540|ref|YP_001713333.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           baumannii AYE]
 gi|169148467|emb|CAM86333.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           baumannii AYE]
          Length = 238

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGRE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDITQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATELGVG 228


>gi|71907213|ref|YP_284800.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71846834|gb|AAZ46330.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  ++  L+   + V V    E+        +FD  ++D+GL    G 
Sbjct: 1   MRILIVEDDNLVAQGLKQGLQQLGYTVDVARSAEEAEAFAVGEDFDITLVDIGLPKADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +R LR      P  IL+   S++D ++GL +GADDY++KP+   E+ ARIRA++RRS 
Sbjct: 61  HFIRQLRTRGNRLPALILTARDSMDDTIKGLDAGADDYMTKPYRLPEVAARIRALIRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    + ++  + T  + G  + LT +E+ ++E+L +     ++K+  +  L  
Sbjct: 121 AVVDACLHHDGIRMDTRSHTATLNGEPLDLTNREWAILEMLLMASPAVVSKDKLVQGLAG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +     I+V + +LR+KL+    G   I TV G GY
Sbjct: 181 WDKDITPNAIEVHVSRLRQKLTT---GTIVIRTVRGIGY 216


>gi|288918473|ref|ZP_06412824.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350113|gb|EFC84339.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA +I   L+     V     G   +EL   + +D I+LD  L  + G 
Sbjct: 1   MRILVVEDEVILAEAIAEGLRQRAMAVDTCGDGASALELAALHPYDVIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+  A   T V +L+    + D+V G   GADDY++KPF   ELVAR++A+ RR+R
Sbjct: 61  DVCRAVVAAGGDTRVIMLTASGDVADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + +++    V   G  I L+ KE+ ++E+L       ++ E  L   +D
Sbjct: 121 AAVPPVLRRAGVELDVPRHQVSRDGRFILLSRKEFAVLEVLMRADGAVVSAEELLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + + +  LR+KL    G    IETV G GY L
Sbjct: 181 SNVDPFTNAVRMAVMTLRRKL----GSPPLIETVAGVGYRL 217


>gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
 gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
 gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E F +   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVT-DQIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNA 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +
Sbjct: 122 LAPKHTDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLTHFVQSPGETLTKEMLSIEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERLDGKARIKTLRGRGYLM 224


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 42  MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 101

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 102 MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 160

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 161 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 220

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 221 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 265


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I  G+L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|206559716|ref|YP_002230480.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035757|emb|CAR51648.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 241

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L    F V V   G+  +   + ++   +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDGYEFAVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-------EELVARIRA 114
           V R +R A  + PV IL+  + + D+V GL++GADDY++KP            L+ R + 
Sbjct: 69  VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AAADTPAVAPDALVFGELTISPPNRTVTWRGEPVELKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L+ E F+V V   G + +E  K +    I+LD+ L    G EV
Sbjct: 6   ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR++  
Sbjct: 66  CREVR-KEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQRS 124

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A+        I  G LS+  DA  V  +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 125 AEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHLLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +V+ +DV + +LR+K+ +      +I T  G GY  R+
Sbjct: 185 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYFRQ 231


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I+  L+ E + V  +  GED +   K   +D ++LD+ L  I GF V
Sbjct: 6   ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKIDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+AR+RA +RR   S
Sbjct: 66  CKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTALS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G L++N +   V+  G  + LT +EY++++ L  +K    ++E  L  ++
Sbjct: 125 SVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 185 GYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK++ + +E  L+ + + V   + G   +   K    + +ILD+ L +  G  +
Sbjct: 2   IYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEKDGITI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ +L+  +   DKV GL  GADDYI+KPF+  EL++R++A++RRS+  
Sbjct: 62  LKEIREFS-DIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSKKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   ++ +N+  ++V+V G +I LT KE++M+ L        +T++ FL  ++   
Sbjct: 121 DTDHISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL NA     YIETV   GY   E
Sbjct: 181 YEGETRTVDVHIASLRAKLKNAG---KYIETVRNLGYKFGE 218


>gi|163814485|ref|ZP_02205874.1| hypothetical protein COPEUT_00636 [Coprococcus eutactus ATCC 27759]
 gi|158450120|gb|EDP27115.1| hypothetical protein COPEUT_00636 [Coprococcus eutactus ATCC 27759]
          Length = 236

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ + + ++ ++++  +   +      G+ +   +  D +ILDLGL D  G  
Sbjct: 7   KVLIIEDEQNINNLLDTLMQANGYQTIIATSCGSGLMMYASHRPDIVILDLGLPDKDGIA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L  +R     TPV +LS  S  +DKV  L  GA+DY++KPF  EELVAR+R+ +R +  
Sbjct: 67  FLTEIRKTDF-TPVIVLSARSDEKDKVEALNLGANDYVTKPFGSEELVARVRSALRTALY 125

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + H   L      +GDL ++ +A+ V +    I LT  EY +++LLS      LT    +
Sbjct: 126 QAHDSELPTGRFQSGDLLIDYEARRVFIGSDEIKLTQTEYNIVDLLSRHPGKMLTYSFIV 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   D    K + V +  +RKK     G K+YI    G GY
Sbjct: 186 KEVWGYNDAGSTKRLQVNMANIRKKFGVKPGKKSYIINELGVGY 229


>gi|332668144|ref|YP_004450932.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336958|gb|AEE54059.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD +L   +  +L+SE ++V +   G+ G+E  K   FD  ILD+ L D  GF+V
Sbjct: 7   VLIVEDDLSLGFLLMELLESEGYSVKLARNGQTGLEQFKKQAFDLCILDVMLGDTDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+     P   L+     ED+++G   GA+DYI+KPF +EEL+ +I  I+RRS   
Sbjct: 67  AKQIRLENTQIPFLFLTARVLKEDRLKGYALGAEDYITKPFEEEELLCKIAVILRRSLHQ 126

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+    GD   +   + +  Q     +T KE +++ LL L +N  L ++  +  +
Sbjct: 127 TVEEPQAQFSIGDYYFDYTKQELVYQNQIERITEKENEVLRLLCLHQNNILRRDDAVERI 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           Y  +D    +  DVFI +LRK L N    +  IE V+  G++L+
Sbjct: 187 YGEKDYFLGRSFDVFISRLRKMLRNDP--RISIENVFKVGFILK 228


>gi|325962049|ref|YP_004239955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468136|gb|ADX71821.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 222

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 115/222 (51%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD A+A ++   + S          G D   L +   F  I+LDLGL D+ G 
Sbjct: 1   MDVLIVEDDDAMASALGAAVVSAGHTSARVSRGADA--LLEHRRFGVILLDLGLPDMDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR LR      P+ IL+        V GL+SGADDY+ KP    EL+ARI A+ RR+ 
Sbjct: 59  EVLRKLRQVT-DVPILILTARDDERSVVLGLRSGADDYLVKPVKLVELLARIEAVTRRAG 117

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G+AQ  IV G+L V+L+ +   +  H + LT  E+ ++ LL+    + +T+E  L+ 
Sbjct: 118 RAPGNAQRRIVLGELEVDLERRLAVLGAHVLPLTATEFDLLALLASHAGSVVTREQILDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+        + +DV +  LR KL        +I  V G GY
Sbjct: 178 LWGDAFLASSRSLDVHLTGLRSKLQL----PGFIINVRGVGY 215


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 21  RVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQ-ARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 245


>gi|237747235|ref|ZP_04577715.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229378586|gb|EEO28677.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL +ED+  +   ++L L++EN+ V+  D  + G+        D ++LDLGL D  G 
Sbjct: 5   IRILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR A  S P+ +LS  S+  DK+  L +GADDY+ KPF   EL+AR+RA +RR +
Sbjct: 65  EFITDLR-AWSSIPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLRRQQ 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I   D+ ++   + VE  G  IHLT  EY+++  ++ + +  +T +  L  +
Sbjct: 124 PGTPNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLLKAI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      ++  I V +  LRKK+   A    ++ T  G GY
Sbjct: 184 WGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGY 224


>gi|209546223|ref|YP_002278113.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209539080|gb|ACI59013.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V          +       D I+LDLGL DI G 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVQEAANAAGARQSVADSLPDLIVLDLGLPDISGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+A R   +S P+ ILS  +     V  L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQAWRDEGLSIPIVILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  I L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGQDIKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V+I +LR+K+       +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYIRQLRQKVEQIPDQPHYITTETGVGYRLRE 228


>gi|75762016|ref|ZP_00741930.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490502|gb|EAO53804.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 207

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 112/205 (54%), Gaps = 9/205 (4%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           GE  ++       D IILDL L  + G EV + LR+ ++ TP+ +L+      DKV GL+
Sbjct: 3   GEMALQKATTERPDLIILDLMLPKMDGMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLE 62

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSR---------GHAQSLIVTGDLSVNLDAKTVEV 143
            GADDY++KPF+  E+VAR++AI+RR++            +  I   +L +  +      
Sbjct: 63  LGADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAYF 122

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
           QG ++ LT KE++++  L+  K+  LT++  L+ +++     + +I+DV I  LR K+  
Sbjct: 123 QGRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLRDKIEQ 182

Query: 204 AAGGKNYIETVWGRGYVLRENAKDE 228
                 YI+T+ G GY L E   +E
Sbjct: 183 NTKKPTYIKTIRGLGYKLEEPKGNE 207


>gi|329908873|ref|ZP_08274974.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546575|gb|EGF31550.1| two component transcriptional regulator, winged helix family
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED   L  ++   L  +   V       D     +   +D I+LDL L D  G 
Sbjct: 1   MRILLIEDHAGLGQAVREQLAEDGHAVDWMQRLADADASLRSTSYDLILLDLILPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + LR  R    +TPV IL+    I D++ GL +GADDY+ KPF+  EL ARI A+ RR  
Sbjct: 61  DFLRKRRAGGDTTPVIILTARDQISDRIAGLNAGADDYLVKPFDLFELSARIAAVARRYG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+    +  G+L VNL  ++V+  G  + LT +E+ + E L  R    L+K      LY 
Sbjct: 121 GNPNPQVHLGELQVNLSDRSVQRAGVVVELTAREWALFEALLQRPGALLSKPQLEERLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V I  LRKKL     G   I TV G GY L
Sbjct: 181 FGAEIESNTIEVHISHLRKKL-----GYQVIATVRGVGYRL 216


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +   L+ E F V     G D +     ++ D ++LD+ +  + G+E
Sbjct: 5   KILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  + + P+  L+  +   DK+ GL  G+DDY++KPF+  EL+ RIRAI+RR   
Sbjct: 65  VCRKIR-EQSNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L +N   +TVE +G  I LT KE+ ++ LL+   N   T++  +  
Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D     +  I+   + +LR+K+        YI+T+ G GY
Sbjct: 184 IWDTEYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGY 225


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ LA  I+  L++  F+  V   GE  +     +    ++LDL L DI G EV
Sbjct: 4   VLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPDISGTEV 63

Query: 63  LRALRVAKISTPVCI--LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   ++  V +  L+      D+VRG + GADDY++KPF+  ELV RI+AI+RR  
Sbjct: 64  CRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILRRGT 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G L++++      V+G  + LT  E++++E +  R     T+E  L  +
Sbjct: 124 PAKEGAAPLTLGPLTLDVATHRFYVEGKEVLLTALEFRLLEHMMTRLGRVQTREQLLEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + ID  + +LR KL  A   + ++ETV G GY
Sbjct: 184 WGLSSNLETRTIDTHVMRLRDKLGPA---RAHLETVRGVGY 221


>gi|153947537|ref|YP_001400292.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959032|gb|ABS46493.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   ++  L  E F       G+ GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S+I  G L++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 120 EQPNLSATESSIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRIR 227


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   +   L+ E + V     GE+ + +    + D +ILD+ +  + G E 
Sbjct: 5   ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLDGLEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + ++ A    P+ ILS    + DK+ G + G DDY +KPF+  EL  R++A++RRS+G 
Sbjct: 65  CQKIKGAA-DVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKGV 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q ++    + + L  + V +    I LT KE+ ++ L++   N   ++   L  
Sbjct: 124 TDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLEQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++ R E +   + V I +LR+K+         I+TVWG GY
Sbjct: 184 IWESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGY 225


>gi|313200933|ref|YP_004039591.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440249|gb|ADQ84355.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 211

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 116/215 (53%), Gaps = 8/215 (3%)

Query: 12  LAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70
           +  S++  L+   + V +V D G   +      ++D ++LD+GL  + G  +L  LR  +
Sbjct: 2   IGESLQAGLRDAGYAVDWVRD-GNHAMPALAHEKYDLLLLDIGLPGMDGISILTTLRTMR 60

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTG 130
              PV +++   ++ED+++GL  GADDY+ KPF   EL+AR+RA++RR  G    L+  G
Sbjct: 61  NPVPVMVITARDALEDRIQGLDIGADDYLVKPFELAELMARMRAVIRRHAGDGMPLLSNG 120

Query: 131 DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
            L++N   + V +     H LT +EY ++E L +R    L++      +Y   +E E   
Sbjct: 121 WLTLNPITREVAMASGICHTLTKREYTLLETLLIRPGAILSRSELETRVYGWGEEVESNA 180

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           I+  I  LRKKL NA      I+ + G G+++ +N
Sbjct: 181 IEFLIHSLRKKLGNAT-----IKNIRGVGWMISKN 210


>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 236

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 130/228 (57%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K ++  ++  L+ E++++     G++G+E     E D I+LD+ L  + GF
Sbjct: 5   VHILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPSMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R  K +TP+ +L+      DKV GL+ GADDYI+KPF+  E+VAR++A VRR  
Sbjct: 65  EICKQIRKTK-NTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANVRRVE 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +   A  L+   D+ +++    V V+G  I +T +E+++++ L+  ++   ++E  L
Sbjct: 124 MIENSAVASQLLKFKDIEIDVSKYIVRVRGEEIKITFREFELLKFLAQHRDQVYSREQLL 183

Query: 176 N----HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + Y G D    + +DV + +LR+K+        ++ T  G GY
Sbjct: 184 TIVWEYEYIGVDSE--RTVDVTVRRLREKIEIDPSNPEFVITKRGVGY 229


>gi|302336274|ref|YP_003801481.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320114|gb|ADK68601.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 130/232 (56%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +EL L+ E + V     G  G+E     ++D ++LD+ L  + G E
Sbjct: 3   RILVVEDEEKIARFVELELRHEGYEVDKAADGRSGVEAALSSDYDLVLLDVLLPQLNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR LR  K  TPV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  ++ R  
Sbjct: 63  VLRRLRRQK-DTPVILLTARDAVMDKVAGLDAGADDYITKPFAIEELLARIRVTLKHRES 121

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF-- 174
           G     + + +    ++++ D   V VQG  + LT +E++++  L   K   LT+     
Sbjct: 122 GQLPSTSSATLAACGVTLDPDRHEVLVQGEPVALTNREFEVLHALMAHKGVVLTRARLAS 181

Query: 175 --LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L + Y G    E   +DV I  LR K+ +  G K  + TV G GYV+RE+
Sbjct: 182 EALGYEYVG----ETNNVDVHIAHLRSKIDDRFGIK-LLTTVRGVGYVVRES 228


>gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
 gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +  +L+ + F V     G +G      Y +D I+LDL L  I G E+
Sbjct: 6   ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLMLPGITGEEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + PV ++S  ++  DK+  L+ GADD+I KPF+ +E+ AR+ A +RR    
Sbjct: 66  IGEIRATK-TMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQF 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G + +L+   +L ++ DA  V V G  + LT +E+ ++ELL        T+      +
Sbjct: 125 SSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +   ++V +  LR KL+ A     YI+TVWG G+ + E
Sbjct: 185 WEEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKMAE 229


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 7   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 67  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+     + IDV + +LR+ L        Y++TVWG GYV 
Sbjct: 187 MN-LARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 233


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +  ++   L  E + V     GE  +EL +    D +ILD+ L  + G EV
Sbjct: 11  ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L   + +  + +L+   ++ D+V GL+ GADDY+ KPF  EEL+AR++A++RR    
Sbjct: 71  CRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRK--- 127

Query: 123 AQSLIVTGDL--SVNLDAKTVEVQGHR----IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q   V G+L    +L+  T   Q HR    I L+  EY+++ L        LT+ + + 
Sbjct: 128 -QPTEVHGELLCFADLELDTATRQAHRGQRMIDLSTTEYELLTLFLRNPRVVLTRGLLME 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E    +++V+I  LR KL    G +  ++T+ G GYVLR
Sbjct: 187 RIWGNDFEGSPNVLEVYIGHLRNKLER-EGEQRLLQTIRGTGYVLR 231


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G  G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKINGLE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R +     PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLILDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|332828645|gb|EGK01341.1| hypothetical protein HMPREF9455_02369 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+  L  SI   L SE+F+V          E    Y++D +++D+ L    G 
Sbjct: 1   MNLLIIEDEIDLLESITEFLVSESFSVQSVTTYSMAEEKVALYDYDCVVVDINLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R L+       V I+S  +S++DK+ GL  GADDY++KPF+  EL ARI++I+RR  
Sbjct: 61  DIIRKLKSKNKDAGVIIISAKNSLDDKLTGLDIGADDYLTKPFHLSELNARIKSIIRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +     +L+V  D + + V    + LT KEY ++    + ++  L+KE    HL+ 
Sbjct: 121 FKGSNEKKFNELTVQFDNRRLFVNEKEVVLTRKEYDLLLYFIMNEDKVLSKEDIAEHLW- 179

Query: 181 GRD----EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G D          I   I  LRKKL +  G K+YI+TV+G GY   E
Sbjct: 180 GDDMSLTADSFDFIYNHIKNLRKKLID-NGCKDYIKTVYGIGYKFSE 225


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +   L+ E F+V     GE  ++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIR-EHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    + V+   +        + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMF 224


>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
 gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L  E FNV   + GE G++     E D I+LD+ +  + G + 
Sbjct: 4   ILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALS-AEIDLILLDVMMPKLNGIDT 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR  +  TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARI+AI+RR+   
Sbjct: 63  LKKLR-EQWDTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRRTSAT 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +   I   DL +          G ++ LT  E+ ++        +TLTKE     +
Sbjct: 122 KAPKSSDCIEYQDLKIYPGRLEAYCAGTQLDLTATEFALLSHFMQNPGSTLTKETLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL   A GK+ I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTLRGRGYLM 224


>gi|117924809|ref|YP_865426.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608565|gb|ABK44020.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 250

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   +   L+  +F V + D G    ++ +  + D ++LDL L D  G +
Sbjct: 6   QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A+ + P+ ILS      D++ GL+ GADDY+SKPF+  EL+ARI++++RR+R 
Sbjct: 66  LCRELR-ARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARS 124

Query: 122 HAQSLIVTGD-LSVNLDAKTVE--------VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             ++++   +  S +    TV+          G+++ LTG E+ ++ +     N  L+++
Sbjct: 125 LPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVLSRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+  Y    EP  + ID+ + +LRK+L + A   + I+TV   GYV 
Sbjct: 185 QILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVF 233


>gi|319780627|ref|YP_004140103.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166515|gb|ADV10053.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDD   A  I   L       +V DL   G DG+      ++D I+ D  +  +
Sbjct: 1   MRLLLVEDDHRTADYIVRGLTEAG---HVCDLLRNGHDGLFAATRGKYDVIVADRMIPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++A+R A + TP   L+ +  I+D+V GL++G DDY+ KPF   EL+ARI A+ R
Sbjct: 58  DGLSMVKAVRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGR 117

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     Q  ++   DL ++L  + V  +G  I L  +E+ ++E+L   +   +T+ M L 
Sbjct: 118 RPAAQEQKTVLRVADLEMDLIMRRVTRRGQPIDLQPREFSLLEVLMRGEGRVITRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   +P   +++  I +LR K+         I TV   GY L
Sbjct: 178 RVWDFHFDPRTSVVETHISRLRAKVDKPF-ETQLIHTVRNTGYSL 221


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 73  AKMIR-SQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDQ 131

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++ +   ++ V+ DA  V +    I LT KE+++++LL   K   +T+E  +  ++  
Sbjct: 132 STENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  +RKKL  +     YI+TV G GY + E
Sbjct: 192 EYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228


>gi|218665330|ref|YP_002424618.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|218517543|gb|ACK78129.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 236

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L+   F V     G     L      D I+LDLGL    G +
Sbjct: 8   QILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQIESLLAEAPVDLIVLDLGLPHEDGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY++KPF+  ELVARI+AI+RR RG
Sbjct: 68  ICRRLRQHH-DVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILRRVRG 126

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A +    G  SV++  + +   G  + LT  E+Q +  L   +   LT+E  +
Sbjct: 127 ADRPPGMATAPFQCGPFSVDMSRQEILRDGKALSLTSAEFQTLATLIQHEGQPLTREKLM 186

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  GR  E + + ID+ I +LR+ L  + G   +I TVWG GY+ 
Sbjct: 187 -WLTRGRQLENDDRSIDMQISRLRRLLDGSPGQPRHIRTVWGHGYLF 232


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+  +   I + L+ + + V     G   + L +          FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSR-GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR    +  S  V    D+S+  +   V V+G  I+L+ KEY+++EL         ++
Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGY 247


>gi|113868143|ref|YP_726632.1| response regulator [Ralstonia eutropha H16]
 gi|113526919|emb|CAJ93264.1| response regulator involved in heavy metal response, OmpR-family
           [Ralstonia eutropha H16]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           M++LL+ED+     +++ + +  + N YV D    G DG+ L     +DAI+LD+ L  +
Sbjct: 1   MKLLLVEDE---IKTVDYLRRGLSENGYVVDTAHNGVDGLHLACTEPYDAIVLDVMLPAL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VL++LR  +  TPV +L+    ++D++    +GADDY+SKPF+  EL+AR+  + R
Sbjct: 58  DGVSVLKSLRREQ-QTPVLMLTARDDLDDRLNAFDAGADDYLSKPFSFLELLARLNVLTR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R    S +  GDL ++L ++       R+ L+ +E+ ++ +L+ R+   ++K      
Sbjct: 117 RGRQTEPSQLTVGDLRIDLLSRRATRGTRRLELSAREFTLLSVLARRQAQIVSKTAITEL 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +    +++V + +LR KL +  G    + T+ G GYVL
Sbjct: 177 VWDISFDCNTNVVEVAVKRLRAKL-DWPGEAKLLHTIRGMGYVL 219


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 125/233 (53%), Gaps = 17/233 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   I + L +E FNV   + G + +E+ K  E   ++LD+ +  + G   
Sbjct: 6   VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K +TP+ +LS      DK+ GL +GADDYISKPFN  EL+AR+++ +RR    
Sbjct: 66  CMKIREDK-NTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124

Query: 119 -SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE---- 172
            S   + S  I  G++++N D   V++    + LT +E+ ++ LLS  K    + E    
Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184

Query: 173 -MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    YD  +      + V I K+R+K+        YI+TVWG GY + +N
Sbjct: 185 SVWHEEFYDCHN-----TVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232


>gi|294650744|ref|ZP_06728095.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823390|gb|EFF82242.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 243

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   IE  LK E   V     G+  IE+      D I+LD+ L ++ G+EV
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R  K  TPV +L+ +    DKV  L+ GADD++ KPFN  E+VAR++A++RR++ +
Sbjct: 75  LNKIR-QKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQQN 133

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEM 173
            Q+L   I+  ++ +N D  +V V  HR      ++LT  EY+++ L+    +   T+  
Sbjct: 134 TQALNKNIIYKNIEINTDIHSVYV--HRDTQKVLLNLTLTEYKILLLMIDHPHKVFTRSE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +NH     D  E + +D  + KLRKKL    G ++ +  V G GY L
Sbjct: 192 LMNHCLPDSDALE-RTVDSHVSKLRKKLEE-QGLQHMLINVRGVGYRL 237


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD ++A  +   L  E +++     GE+G+   K + +D +++DL +  + G EV
Sbjct: 5   ILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    + P+ I+S   S  DK  GL  GADDY++KPF+  E+ ARI++ +RRS  +
Sbjct: 65  IRRIRTHS-AVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTY 123

Query: 123 AQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+           ++  G L ++ D   V    + I LT KE  +++L     N   TK 
Sbjct: 124 ARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTKA 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++      +  +I+V I +LR+K+        +I+T+WG GY
Sbjct: 184 QLYGFIWKDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGY 230


>gi|167565375|ref|ZP_02358291.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 134/237 (56%), Gaps = 15/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVAAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR++ 
Sbjct: 69  VCRRIR-AFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GAPVDTPGSEALVFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EDL933]
 gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227]
 gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. Sakai]
 gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11]
 gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a]
 gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026]
 gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str.
           REL606]
 gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. TW14359]
 gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11]
 gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli ED1a]
 gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli UMN026]
 gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli B str. REL606]
 gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O157:H7 str. TW14359]
 gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. 493-89]
 gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. H 2687]
 gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180]
 gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74]
 gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
          Length = 223

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|24379132|ref|NP_721087.1| putative response regulator SpaR [Streptococcus mutans UA159]
 gi|290580858|ref|YP_003485250.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377036|gb|AAN58393.1|AE014909_9 putative response regulator SpaR [Streptococcus mutans UA159]
 gi|254997757|dbj|BAH88358.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 4/218 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D++ +   I+  L+ +N+ V  T +  + ++  K  ++D I+LD+ + D+ G  
Sbjct: 3   RILVIDDEEDILALIKNTLQLQNYLVK-TFVSANQVDRSKLADYDLILLDIMMPDVDGLS 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R   +  P+  L+  S   D V GL  GADDYI KPF  +EL+AR+ A +RR R 
Sbjct: 62  FCRDIR-NLVDCPILFLTAKSQEADVVTGLSYGADDYICKPFGVQELLARVDAHLRRERR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V   +  +L AK V  +G ++ LT  EY++ ELL+ R+    +K+   ++LY  
Sbjct: 121 EHHASLVLEPIRFDLSAKRVTAKGKKLDLTKSEYEICELLAKRRGQVFSKDQLYDYLYTY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +      I   I  +R K      G   IETVWG GY
Sbjct: 181 EERGTPAAIAEHIKNIRAKFRTI--GLEPIETVWGIGY 216


>gi|15893581|ref|NP_346930.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023129|gb|AAK78270.1|AE007542_7 Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507701|gb|ADZ19337.1| Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 235

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D++++   +  +LK E F NV  +  G DG++ C+    + IILD+ L DI GF
Sbjct: 8   KILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------ 114
           EV R +R    S P+  LS  S   DK+ GL  GADDYI+KPF+ +E+  R++A      
Sbjct: 68  EVFRQIRNFS-SVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +V++S  + +++I T   +++ +   +        L  KE  +++ L   KN  L+KE  
Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +N +++         I V I KLR+KL +      YI TV G GY L+
Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLK 234


>gi|83026425|gb|ABB96249.1| cell cycle transcriptional regulator [Azospirillum brasilense]
          Length = 264

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 22/231 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKS----------ENFNVYVTDLGEDGIELCKFYEFDAIIL 50
           MR +L+E +  +A ++   L                  + D G DG+       +DAI+L
Sbjct: 1   MRAVLVEPNPLIADALGRQLGMGKIRYDRQDWAGLEELLRDQGADGLG------YDAIVL 54

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
             G  D P    + ALR  ++   +  L     +   V  L +GADD + KP    E+ A
Sbjct: 55  --GSVDDPA-RCVAALRAHQVGAAILCLLDRRCVATTVELLHAGADDVLVKPVVSAEVRA 111

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RI    RRSRG   + +  G L+V LD +  EV G R+ L+ +E+ ++ +L+      ++
Sbjct: 112 RIEVARRRSRGLLSNAVRVGQLTVFLDGRDPEVAGERLRLSQREHAILGVLAAHHRRVVS 171

Query: 171 KEMFLNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           KE   + +Y   G D P  K+IDV+ICKLRKK++ A GG  YIETV+GRGY
Sbjct: 172 KEHIYDEVYGLSGAD-PLDKVIDVYICKLRKKIAEATGGARYIETVYGRGY 221


>gi|87120094|ref|ZP_01075990.1| response regulator protein [Marinomonas sp. MED121]
 gi|86164796|gb|EAQ66065.1| response regulator protein [Marinomonas sp. MED121]
          Length = 243

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 17/235 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLI+DD++LA  ++  L   +  +   +    G +L +  +  AIILD+ L +  GF
Sbjct: 3   VKILLIDDDESLADLLKQYLARYDMQLVSANCPSLGYQLLEKEQPQAIILDVMLPEEDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K   P+ +L+    + D+V GL+ GADDY+ KPF   ELVAR++ I+RR  
Sbjct: 63  EVCKHVR-RKSDIPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRRLE 121

Query: 121 GHAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             +Q            ++    + +N + + V++   R+ LT  EY+++ L++    T  
Sbjct: 122 KQSQKENQTDASSAEHILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQTVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-----NYIETVWGRGY 219
           +++  LNHL     E   + +D+ I +LR+K   A         ++I+TVWG GY
Sbjct: 182 SRDDILNHLKGVEIELFSRSVDIAISRLRQKFKAATPDDHHVSVDFIKTVWGAGY 236


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLID-NSIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q      S  +  D L +N   +        + LTG E+ ++ LL+      +++E  
Sbjct: 121 SEQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 227


>gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11]
 gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11]
          Length = 239

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 232


>gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 241

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A ++   L +E F+V V   GE  +        D ++LD  L  + G E
Sbjct: 20  RVLVVEDDETIARAVRHRLAAEGFDVQVVGDGEGALAAYARSGPDVVVLDRLLPGLDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+ +    D + GL  GADDY++KPF+  ELVAR+ A++RR   
Sbjct: 80  VCRRMQAAR-PVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVER 138

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +Q      +I  GD+ ++   + V V+G    LT  E+ ++  L+ R      +E  LN
Sbjct: 139 ASQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLLN 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   +    + +D  +  LR+KL     G   + TV G GY L
Sbjct: 199 DIWGFSEAAATRTVDSHVRALRRKL-----GPGVVRTVHGVGYAL 238


>gi|260461766|ref|ZP_05810012.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319785311|ref|YP_004144787.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259032407|gb|EEW33672.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317171199|gb|ADV14737.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 371

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED +    ++ E M+   +   +  DL E          +  ++LD+ L D  G
Sbjct: 1   MRILLIEDSEDFGSAVREHMIADGHAVEWAKDLSEARYHASGI-PYGLVLLDINLPDGNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR +R  + STPV I++   ++ED++ GL +GA DY+ KPF+  EL ARI A+  RS
Sbjct: 60  LDYLREMRKGRDSTPVIIVTARHTVEDRIEGLNAGAADYLVKPFDPRELSARIHAVA-RS 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+       G LS+N   + V + G  ++LT +E+ +++ +  R    + K      L 
Sbjct: 119 HGNFPKPYSVGALSINAAERRVALDGQPVNLTAREWAILDCVLSRPGAVVLKRKIEEELL 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               E E   ++V++ +LRKK+     G++ I T+ G GY   E +++
Sbjct: 179 SLGSESESNTVEVYVSRLRKKI-----GRDRIATLRGLGYSFVEESRN 221


>gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O127:H6 str. E2348/69]
 gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 223

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+  +   I + L+ + + V     G   + L +          FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSR-GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR    +  S  V    D+S+  +   V V+G  I+L+ KEY+++EL         ++
Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGY 247


>gi|148360632|ref|YP_001251839.1| two component response regulator [Legionella pneumophila str.
           Corby]
 gi|148282405|gb|ABQ56493.1| two component response regulator [Legionella pneumophila str.
           Corby]
          Length = 223

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F       G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+AR+++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KESPILLKINDLTINLQKHTAIRGDKKLPLTAKEFMLLTFMLKRSGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    IIDV I +LR+K+ N    K  I TV G GYVL
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVL 220


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ + H + + L+ E + V     G + +E  +  ++  +I+DL + +I G++V
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ +L+      D+V G + GADDY+ KPF+ +ELVAR++A++RRSRG+
Sbjct: 64  CRDVR-ERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S ++ G L +  D   V +   +I  T +E++++  L+   +   ++E  +  ++
Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 + + +D  + K+R+KL++    ++ + TVWG GY     A +E
Sbjct: 183 GYDFYGDARTVDTHVKKIREKLADPK-VRSMLATVWGVGYKFDPEAANE 230


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G ++++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|224823724|ref|ZP_03696833.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224604179|gb|EEG10353.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 220

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A  ++  L    F V     G+ G+       FDA+ILDLGL  + G 
Sbjct: 1   MRILLIEDDDMIADGLKAGLGQLGFVVDWFRDGKSGLAALSGAPFDAVILDLGLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL A R A  S PV IL+   ++ ++++GL +GADDY+ KPF   E+ AR+RA++RR  
Sbjct: 61  EVLAAWRRAGRSEPVLILTARDALPERLKGLDAGADDYLVKPFALAEVAARLRALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  L + G LS +  A+   + G  + LT +E  ++ELL + K   L + +    LY 
Sbjct: 121 GQSGPLYLHGALSFDPVARRATLSGEPLELTARELALLELLLVSKGRVLPRSLIEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   ++V +  LRKKL     G  +I+TV G GY L
Sbjct: 181 WDQELDSNAVEVHVHHLRKKL-----GSGFIKTVRGIGYTL 216


>gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 251

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 27  MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 147 TPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDF-SQPLLKTIRGAGYMIKDEG 251


>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EC4024]
 gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. EC1212]
 gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. G5101]
 gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1125]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK+EN+NV+     ++ +   +    D  ILD+ +  I GF
Sbjct: 1   MNILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ +R    + PV +L+      DK+ G   GADDYI+KPF   EL+AR++A +RR  
Sbjct: 61  TVLQKIR-ETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFT 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+ H  ++   G L +N + + V +   ++ LT  E+ ++  L   +   ++ E 
Sbjct: 120 LYNQSSKPHENTIDFAG-LMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEE 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++  +       + V I  LR+K+ ++     +I+TVWG GY +
Sbjct: 179 LFQEIWGEKYFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTI 226


>gi|294085303|ref|YP_003552063.1| response regulator protein [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664878|gb|ADE39979.1| response regulator protein [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 221

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 115/202 (56%), Gaps = 1/202 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ LA ++   LK     V +T  GE G+   K  +FD  ILD+ L    G 
Sbjct: 1   MRILIIEDNETLATALSHRLKDNGHAVNMTHDGETGLAFLKQEDFDLAILDINLPLRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R   ++TPV IL+   + ++++ GL +GADDY+ KPF  +EL AR+RA++RR R
Sbjct: 61  DLLCQARRDNVTTPVLILTARDTTQERIIGLDTGADDYLVKPFEMDELDARVRALLRRQR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q   + G L  +    +V  +G  + L  +E  + E L  R    ++K   L+++Y 
Sbjct: 121 NNNQHEQI-GKLVFDRRGHSVSFEGKDLGLPRREISIFECLFDRSGRFVSKANLLDYVYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
              +    +I+V++ +LRK+L+
Sbjct: 180 IGADVNESVIEVYVSRLRKRLT 201


>gi|114327401|ref|YP_744558.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315575|gb|ABI61635.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 255

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+   F V       +         F  ++LDL L    G ++
Sbjct: 23  ILIVDDDREIRELLARFLEKNRFRVTAVRDSREARRAWVNGHFQLLVLDLMLPGEGGLDL 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +  P+ +L+ M    D++ GL+ GADDY++KPFN  EL+ARIRA++RR+ G 
Sbjct: 83  ARWVRSQSL-VPIVMLTAMGEETDRIVGLEIGADDYVAKPFNPRELLARIRAVLRRTEGE 141

Query: 123 AQSLIVTGDLSVNLDAKTVE--------VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +++      S       +E         QG  + LTG EY ++  L  R N  LT++M 
Sbjct: 142 LRTVETANQKSRRFAGWVLEPARRRLINPQGAEVPLTGGEYDLLSALVDRPNRVLTRDML 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ L   +  P  + IDV I +LR+KL +       I+TV   GYVL
Sbjct: 202 LDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRQSQLIKTVRSGGYVL 248


>gi|297518448|ref|ZP_06936834.1| DNA-binding transcriptional regulator PhoP [Escherichia coli OP50]
          Length = 213

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 118/217 (54%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A   +  I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPQEVITTV 213


>gi|109453288|gb|ABG34124.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453290|gb|ABG34125.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453292|gb|ABG34126.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453294|gb|ABG34127.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453296|gb|ABG34128.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453298|gb|ABG34129.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453302|gb|ABG34131.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453306|gb|ABG34133.1| PhoP [Salmonella enterica subsp. arizonae]
          Length = 213

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 117/217 (53%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIIDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +  PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|326386033|ref|ZP_08207657.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326209258|gb|EGD60051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 258

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD   A  I   L++E+  V     G   ++      FDA  +D  L  + G  
Sbjct: 32  QILVVEDDTETAALIRTALEAEHHTVVHLADGRTALDRLAAERFDAATVDRMLPGLDGLT 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R  +I+TPV ++S +  +++++ GL++G DDY++KPF+  E+V RI  ++RR+R 
Sbjct: 92  LVARMRARQITTPVLVISALGDVDERIAGLRAGGDDYLAKPFSPAEMVTRIEVLLRRARD 151

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           + +   +  G L ++L  +   V G  + L  KE++++E L       + +++    ++ 
Sbjct: 152 YPEDGFLRAGPLELDLVKRKAWVMGEAVELLNKEFRLLEFLVRHAGHVVARQVIFEQVWG 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +I+V I +LR+KL   A     IET+ G GY L
Sbjct: 212 RYFEASDNLINVHIARLRRKLER-ADWPAPIETIKGEGYRL 251


>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ ++   +++  K   F V     GE  +E  +       ILD+ L  + GF+
Sbjct: 3   KVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVMLPGMDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               LR       + +L+  S   DK+ G   GADDY+ KPFN +EL+AR+ A++RR   
Sbjct: 63  TCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRRIGL 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + S   ++V+G+  ++  A  V      + LT KEY ++++    +   L +   LN +
Sbjct: 123 QSDSKNEVLVSGEFKIDEGAMKVYRSEQELELTPKEYMLMKIFIENQGKALNRNELLNLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + KI+DV I +LR+K+   +    YIETVWG GY  R+
Sbjct: 183 WGYSYPGDAKIVDVNIRRLREKIEENSSKPKYIETVWGVGYRWRK 227


>gi|198282255|ref|YP_002218576.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|198246776|gb|ACH82369.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 234

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L+   F V     G     L      D I+LDLGL    G +
Sbjct: 6   QILVVDDDLRLRGLVESHLQGFGFGVRGMSDGRQIESLLAEAPVDLIVLDLGLPHEDGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY++KPF+  ELVARI+AI+RR RG
Sbjct: 66  ICRRLRQHH-DVPILMLTARGDEVDRILGLEMGADDYLAKPFHPRELVARIQAILRRVRG 124

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A +    G  SV++  + +   G  + LT  E+Q +  L   +   LT+E  +
Sbjct: 125 ADRPPGMATAPFQCGPFSVDMSRQEILRDGKALSLTSAEFQTLATLIQHEGQPLTREKLM 184

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  GR  E + + ID+ I +LR+ L  + G   +I TVWG GY+ 
Sbjct: 185 -WLTRGRQLENDDRSIDMQISRLRRLLDGSPGQPRHIRTVWGHGYLF 230


>gi|160897044|ref|YP_001562626.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160362628|gb|ABX34241.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 224

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 128/226 (56%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKF----YEFDAIILDLGLT 55
           MR+LL+EDD  +  +++ +L+ E   V +V D  +    LC      + +D ++LDLGL 
Sbjct: 1   MRLLLVEDDAMIGEAVQTLLRGEGHAVDWVRDGLQADAALCPGPGGGHGYDMVLLDLGLP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +VLR LR  +  TPV + +   ++ D++ GL +GADDY+ KP++ +EL+AR+RA+
Sbjct: 61  GQDGLQVLRHLRGRRDRTPVLVATARDAVRDRIAGLDAGADDYVVKPYDLDELLARLRAL 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            RR+ G +  L     + +N   +   V G  + L+G+E+ ++E L  R  +TL+++   
Sbjct: 121 ARRASGGSDPLYEREGVRLNPATREASVDGRDVVLSGREWAVLETLLARPGSTLSRQQIE 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LY   DE     I+V+I  LRKKL     G   I  V G GY++
Sbjct: 181 DKLYGWGDEVSSNAIEVYIHGLRKKL-----GAGLILNVRGVGYMV 221


>gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+ +   I   L  E +    T  G   +E  +  EF  +ILD+ L  + G+
Sbjct: 5   IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K +TPV ILS      DK+ GL  GADDY++KPF   EL AR++A +RR  
Sbjct: 65  EVLQKIR-EKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYL 123

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +        +I   ++ +N+D   V+V  + + LT KE+++++L         TK   
Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++      +   + V I +LR+K+       +YI+T+WG GY L E
Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVE 232


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|315924292|ref|ZP_07920515.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622363|gb|EFV02321.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 204

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 115/204 (56%), Gaps = 4/204 (1%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
           M K +N +  V + GE+G+       +D I+LD+ L    G E+L+ +R   I+TPV +L
Sbjct: 1   MCKIQNIDCDVANDGEEGLLFALNPIYDVIVLDIMLPLKSGLEILKEIRDRDITTPVLML 60

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-LIVTGDLSVNLD 137
           +   +++DKV+GL  GADDY+ KPF+ +EL ARIRA+ RR     +   I   ++S N  
Sbjct: 61  TAKGTVDDKVKGLDLGADDYLVKPFSAKELFARIRALSRRPDNEIKGECIDFENISFNTK 120

Query: 138 AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKL 197
             T++ +     L+ KE +++E+L  R N   T+E  L+ ++    E     I++++  L
Sbjct: 121 KNTLQTESEEYKLSVKEAKILEMLIKRPNQVFTREQILDRVWGFDKEVNENNIEIYVHNL 180

Query: 198 RKKLSNAAGGKNYIETVWGRGYVL 221
           RKKL++       I+T+ G GY +
Sbjct: 181 RKKLADTNVK---IDTIRGVGYTM 201


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 18/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD AL+  I   L+ + + V V   GE  +E  +    D ++LD  L  I G EV
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGISGLEV 65

Query: 63  LRALR-VAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   K +T P+ +LS      D +RGL +GADDY+ KPF+ E L AR++A++RR  
Sbjct: 66  CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR-- 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK-------EYQMIELLSLRKNTTLTKEM 173
                 +   D ++  D   ++   H++  +G+       EY+++E   L      ++E 
Sbjct: 124 ------LPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREE 177

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L H ++     E++ +DV I +LR+ L N    ++ I TV  RGY L
Sbjct: 178 LLKHAWERSSFVELRTVDVHIRRLRQTL-NEGDEQDLIRTVRARGYAL 224


>gi|288573461|ref|ZP_06391818.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569202|gb|EFC90759.1| two component transcriptional regulator, winged helix family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 5/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++   +   LK   F+V   D G+D +++      D ++LDL L  + G+E
Sbjct: 7   RILLVEDESSIVDVVSQALKRHGFDVMTADNGDDALDMLYPVLPDLVLLDLMLPGMDGWE 66

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R +  S   P+ +++      D V+GL+ GADDYI KPF+  EL+AR+++++RR+
Sbjct: 67  VCRRIRSSPESRALPIIMMTARRDERDLVQGLELGADDYIRKPFSLVELMARVKSLIRRT 126

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    +  +  GDL ++L+ +  + +G  I+L+  EY+++  L+ R    + +E  L+ +
Sbjct: 127 QLVQTKPTVSVGDLEIDLEGQIAKFKGEEINLSLTEYRLLRTLAERPGQVVPRERLLSLI 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLRENAKDETCE 231
           + G    + + +DV I +LRKKL+ A G     I  + GRGY +     DE  E
Sbjct: 187 W-GVYGGDTRTVDVHISRLRKKLAQAGGDSAPTITALRGRGYRIIVEESDEKPE 239


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E + V     G++ I +L    +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+R +R      PV +LS  +   DK++GL  GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  LAVVREVR-KDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   ++     I  G L +  D+  VE V G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QHDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  + GG+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGY 224


>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
 gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       S  +  D L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 228


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L   ++  L +E F+V     G  G +L    +FD  +LD+ +  + G E
Sbjct: 3   KILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R +    PV +L+      D+  GL+ GADDY+ KP    EL ARIRAI+RR++ 
Sbjct: 63  TLGLIRKSS-QIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAKP 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +SL     +  GDL++  + + VE+ G+ I+LT  E+ ++E+L+      ++K+    
Sbjct: 122 TQESLQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELAK 181

Query: 177 HLYDGRDEPEVKI---IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               G  +P  +    IDV +  +R+K+     G++ I+TV+  GY L
Sbjct: 182 L---GMGKPLARFDRSIDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQL 226


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 15/226 (6%)

Query: 8   DDKALAHSIELM-LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           DD+A    + LM L+   + V   + GE+ + L    + D ++LD+ L  + GF V R L
Sbjct: 2   DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAVCRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQS 125
           R A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG A +
Sbjct: 62  R-AESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSASA 120

Query: 126 ----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +   L
Sbjct: 121 EPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAEIL 180

Query: 176 NHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 181 EQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 226


>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
 gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
 gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
           8739]
 gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
 gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
 gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
 gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
 gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
 gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
 gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli W]
 gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
           dysenteriae CDC 74-1112]
 gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
           flexneri CDC 796-83]
 gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
 gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|332188505|ref|ZP_08390226.1| response regulator [Sphingomonas sp. S17]
 gi|332011463|gb|EGI53547.1| response regulator [Sphingomonas sp. S17]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+     V     G + +        DA++LDLGL D  G  +
Sbjct: 5   ILVVDDEVAIRRLLRNTLEQAGHQVVEARDGREALARAAADHPDAVLLDLGLPDRDGLSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR  +    V ++S   + E+KV  L  GADDY++KPF+ EEL+AR+R  +R +R  
Sbjct: 65  IPLLR-GQGERVVLVVSAREATEEKVAALDLGADDYVTKPFDSEELLARLRVALRHARAA 123

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++ TGDL++NLD + V   G   HLT KEY ++ +L+      +T +  ++  + 
Sbjct: 124 EAAPRIVKTGDLAINLDRRLVTRGGEEQHLTRKEYDVLAMLARHPGRVVTHDKIIDAAWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G ++P +  + + +  LR+KL       + I    G GY LR
Sbjct: 184 GDEDPRIDYLRIVVRNLRQKLEAPQPVGSVIANELGVGYRLR 225


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ + +L    + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V+ ++   I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 17/238 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 1   MLLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR     TP+ +L+ +   +D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 61  CRVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPD 120

Query: 121 -----GHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                G A         Q  I    L +++ A+        + LT  E++++ELL     
Sbjct: 121 GMAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNAG 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L      + ++     P  K + V++  LR+KL +  G    I TV G GYVLRE+
Sbjct: 181 IVLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPQLIHTVRGVGYVLRED 237


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V   + G +G+ + +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  G++ +N+    V V+   + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++ R       + V I K+R+K         YI+TVWG GY
Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGY 227


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFF 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   ++  N+N  + + G + +   K    D IILD+G+ ++ GFEV
Sbjct: 4   ILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  LS      D++ GL+ G DDY++KPF+  ELVARI AI++R+ G 
Sbjct: 64  CREIR-KHSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTNGP 122

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S +  G + ++   ++V   G  + LT  E+++++L   R   T +++  ++
Sbjct: 123 KITGEAKPSQLQAGGVQLDPSYRSVAYNGQPVELTSIEFEILKLFLDRPRMTFSRDRIID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R KL+  AG  N IETV   G+ L
Sbjct: 183 LAYPPNIHVSDRTIDSHIRNVRSKLTT-AGAPNLIETVHAVGFRL 226


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALREHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   TPV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V      I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VSVFTRLSING-LDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E   +DV I +LR K+ +    K  I TV G GY L+  A
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLITTVRGMGYRLQAEA 222


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   V   G+  +   + ++ D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A  S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ATSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGEA 122

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A+        ++  G + ++++  TV V G  + +  KE+ ++E L       LT+   +
Sbjct: 123 AEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 183 DRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGY 226


>gi|255292688|dbj|BAH89795.1| two component response regulator [uncultured bacterium]
          Length = 219

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 115/224 (51%), Gaps = 11/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVT--DLGEDGIELCKFYEFDAIILDLGLTDI 57
           MRILLIEDD  L  ++   + ++  +V +VT  D   D +    +      ++      I
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAAADAMSTTSYDLLLLDLMLPDGRGI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF  L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ R
Sbjct: 61  -GF--LKGLRTRGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLSELSARIGSVAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K      
Sbjct: 118 RYSGNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEK 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY    E E   I+V + +LRKKL +A      IET  G GY L
Sbjct: 178 LYAFDAEVESNTIEVHVSRLRKKLGSA-----IIETERGMGYRL 216


>gi|241203510|ref|YP_002974606.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857400|gb|ACS55067.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+  +  I            V   G DG+   +   +D I++D  L  + G 
Sbjct: 5   MRILLIEDDRKTSDYIAKGFSEAGHVCDVVGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR AK+ T    L+ +  ++D+V GL++G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 65  AIVRSLRAAKVGTSALFLTSIGGVDDRVEGLEAGGDDYLVKPFAFSELMARVNALGRRPP 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++L  +     G  I L  +E+ ++E+L   +   +TK M L  ++
Sbjct: 125 VQEQRTVLKVADLELDLIRREARRAGQVIELQPREFTLLEVLMRGEGRVITKTMLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+         + TV   GY L
Sbjct: 185 DFHFDPKTSVVETHISRLRAKVDKPF-QVQLLHTVRNTGYSL 225


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAII 49
           R+L++EDD+ +  +++  L+ E F+V     G D +   +               F  ++
Sbjct: 4   RLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVV 63

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LDL L  + G +V RALR A   TP+ ++S   S  D+V GL+ GADDY+ KPF   ELV
Sbjct: 64  LDLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELV 123

Query: 110 ARIRAIVRR--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           AR RA++RR  S+G A+ ++   ++ +  +   V   G  ++L+ KEY+++EL       
Sbjct: 124 ARCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRR 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  L H++      + K +DV I  LR+K+        ++ TV G GY
Sbjct: 184 VWSRDKLLEHVWGVDYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGY 235


>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD---- 56
           +RILL+ED+  LA ++  +L+ +    +V D   DG+        D    DL L D    
Sbjct: 3   LRILLVEDEPDLAEALVALLEQQG---HVVDHCSDGLSAWTLLSGDLARYDLALVDWMLP 59

Query: 57  -IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ R LR A  + PV +L+      D+V GL +GADDY+SKPF  EEL+AR+RA+
Sbjct: 60  QLSGVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRAL 119

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTK 171
            RR  G+ +  +  G   ++     + VQ      R+ L+ KE Q++          L+ 
Sbjct: 120 QRRHPGYREPQLQVGSYRLDPSRSELTVQAATGAVRVPLSAKELQLLTYFMEHSGDILSG 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               N L+D   +P   ++   +  LR+KL++  G  + I TV  RGY
Sbjct: 180 SRLRNQLWDLHQDPVSNVVAAQVRLLRRKLAD-HGLPSPITTVPSRGY 226


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A+ +   L ++ FNV       D + +      DA+ILD+ L  + G+ +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR +R      PV  L+   S+EDK+ GL  G DDY++KPF+ EE+VAR+R I+RR   S
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  +S  +V  D+ +N +   V   G  + L+  E+ ++    +     L+K   L H+
Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILEHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      ++ +++ ++  LR+K+    G K  ++T+ G GYVLRE
Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKIDT--GEKKMLQTLRGVGYVLRE 238


>gi|315641787|ref|ZP_07896791.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482462|gb|EFU73001.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           +++ ++EDD  L+ +I  +++   E   VY    G +G+   +   +D +ILDL L ++ 
Sbjct: 8   IKLSVVEDDAVLSENILEIIEPLGEVTQVYT---GSEGLFELETNIYDLVILDLMLPEMN 64

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EVL   R   I TP  IL+   ++EDK+ G + GADDY++KPF +EEL  R++++++R
Sbjct: 65  GYEVLAQARKQNIQTPNLILTAKDALEDKITGFEKGADDYLTKPFYREELPMRVKSLLKR 124

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G   ++ +V  DL+ +L+ K V   G  + + GKE++++      +   LTKE   + 
Sbjct: 125 SLGLFDENSLVYRDLTCSLNTKEVTYNGEVLPIQGKEFELLVYFIQNQRVILTKEQIFDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++       + +++V++  LRK L      K+ ++T+   GY+L
Sbjct: 185 IWGFDSATTLTVVEVYMSNLRKHLRTTGIDKD-LQTLRNVGYML 227


>gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +   ++  L SE + V     G +G +L K  EF+ I+LD+ L    G E
Sbjct: 3   KILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTKLAKSGEFNLILLDIMLPYKSGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV ILS    +  K+  L+ GADDYI+KPF+  E+ AR+   +RR+  
Sbjct: 63  ILKEIRTWG-DVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMFL 175
             +   ++   DL V  + K V V G  + LT KEY M+ELL    N   +K    E   
Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N  Y G D      +   +  LR KL        YIETVWG GY L
Sbjct: 182 NEEYLGDDNA----VKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD ++A  +   L+ E F+V     G  G  L    + D ++LD+ L  + G EV
Sbjct: 8   VLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R   +  P+ +L+      D+VRGLQ GADDYI KPF+ +ELVARI+AI+RR +  
Sbjct: 68  CELIRRESV-VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126

Query: 123 AQSLIVTGD------LSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +GD       S+ +D  A+ V  +  ++ L+ +E++++ LL       L++   
Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      + K +DV+I  LR+K+        YI+TV G GY
Sbjct: 187 LDRIWGEDWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGY 231


>gi|166030486|ref|ZP_02233315.1| hypothetical protein DORFOR_00147 [Dorea formicigenerans ATCC
           27755]
 gi|166029738|gb|EDR48495.1| hypothetical protein DORFOR_00147 [Dorea formicigenerans ATCC
           27755]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     +  D ++LDLGL DI G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKTHEYRYLTAPDGQSAILETSSHNPDIVLLDLGLPDIDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLSMM 124

Query: 119 -SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                A++++ V G L V+  A    +    +HLT  EY+++ LL+      LT      
Sbjct: 125 QKVSPAEAVVFVNGKLRVDYAAGCAYLNEEELHLTPIEYKLLCLLTRNIGKVLTHTFLTQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 SIWGSSWDNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A  ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+ +      ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKL 226


>gi|156740251|ref|YP_001430380.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231579|gb|ABU56362.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+ LA  I  +L+ E+  V V   G+ G E      ++  I+D  L    G 
Sbjct: 1   MKILLIEDDQRLARLIARVLRDEHHQVDVVHDGDAGQEHALRGIYEVAIIDWMLPGRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + RA+R A++ T + +L+    IEDK+ G  SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SICRAVRAARLPTALLLLTARGQIEDKMVGFDSGADDYLVKPFAFEELLARVRALGRRFT 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +  +  GDL ++L   T       + LT  E+ ++E L       L+++  L+++
Sbjct: 121 LQPDDRDELRVGDLVLDLRHHTARRGARPLDLTPTEWNLLEYLMRNAGQALSRQQILDYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + + +++DV+I  LR+KL NA G ++ I TV G GY L E+
Sbjct: 181 WSYEHDVQPQMVDVYIAYLRRKL-NAPGERDPIVTVRGVGYRLEES 225


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   + + L++  FNV   D  +         + D ++LD  +    G E
Sbjct: 12  RILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGTTGLE 71

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +LR L+  +++  TP+ +L+  +  + K+ GL SGADDYI KPF+  EL++R+ A++RR 
Sbjct: 72  LLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRRI 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   +  I  G+L  +     V + G  I+L   EY++++     +    ++   L+++
Sbjct: 132 GREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDYV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G    + + +DV I +LRK +S  AG +NY++TV G GY
Sbjct: 192 WGGNVYLDERTVDVHIRRLRKAIS-VAGHENYVQTVRGAGY 231


>gi|299769533|ref|YP_003731559.1| response regulator [Acinetobacter sp. DR1]
 gi|298699621|gb|ADI90186.1| response regulator [Acinetobacter sp. DR1]
          Length = 238

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ I   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHIYDDGYLKVDVTQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
 gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +A  +EL LK+EN+ V+     ++ +E     E D  ILD+ L D  G  
Sbjct: 4   KVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDASGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 REIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGY 227


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D+  +   +   L+ EN+       G++ ++L +   F  ++LD+ + ++ G 
Sbjct: 6   FKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGL 65

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
                +R+ + S  P+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI A +RRS
Sbjct: 66  TA--CMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRS 123

Query: 120 RGHA--QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 QS  +T G L ++ ++++V V G  I LT KE+ ++ L     +   ++E  L+
Sbjct: 124 HRFTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++       ++ +D  I  LR KL  A G    I+TVWG GY   E
Sbjct: 184 QIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I+  L ++N+ + V   G +GI+      FD I+LD+ + ++ GFEV
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + LR  + + P+  L+ +   +D+++G   G DDYI+KPF+   L+ R++A++RRS   
Sbjct: 65  AKMLR-NQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + +   +L+V+ D     V    I LT KE+++++LL   +   LT+E+ +  ++  
Sbjct: 124 NWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  LRKKL+       YI+TV G GY + E
Sbjct: 184 DYSGETRMIDTHIKNLRKKLNLP-----YIKTVKGIGYKIDE 220


>gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22]
 gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
 gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22]
 gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
          Length = 239

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 232


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   ++++L+ E + V     G  G+E  K   ++ I+LDL L DI G +
Sbjct: 4   KILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPDIAGEQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + +A+R      P+ ILS   S+ DKV  L+ GADDYI+KPF   EL+ARI+AI+RR   
Sbjct: 64  LCKAIR-KNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +     S++   +  ++++   V+     I+ T KE+++   L   K   ++++  +
Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N L+ G+D      + IDV I  +R+K+   + G  Y++T+ G GY L E
Sbjct: 183 NELW-GKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLEE 231


>gi|225871922|ref|YP_002753376.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225793413|gb|ACO33503.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 234

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL++DD AL   +E  L  E + V     GE  +EL +    D ++LDL L    G 
Sbjct: 1   MQVLLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL ALR      PV +L+G S +  +VR L  GADD + KPF+  EL AR RA++RR  
Sbjct: 61  EVLAALRARHAEVPVLVLTGRSEVASRVRCLDLGADDCLLKPFSLAELKARCRALLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   DL VN    TV+  G  + LT  EY ++E L L +   +++   L  ++ 
Sbjct: 121 GTAHLVLRHEDLEVNRVEHTVQRGGREVALTRTEYALLECLMLHRGRPVSRARLLEEVWH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    I+DV++  LR+KL +  G    I+TV G GY +
Sbjct: 181 ESAENGTNIVDVYVNYLRRKLGD-EGPAPLIQTVRGLGYAV 220


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 22/237 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDIP 58
           RIL+++D+ A+  +++   +S  F  Y T++  DGI+     + Y  D ++LD+ +  + 
Sbjct: 9   RILIVDDEPAVREALQ---RSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMD 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G    R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RR
Sbjct: 66  GLTAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 125

Query: 119 SR-------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           S              GH   ++   DL ++L  + V      + LT  E+ ++ELL    
Sbjct: 126 SSYASAAGDTASGDDGH--EILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHP 183

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              LT+E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 184 RQVLTREQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 239


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ L   +   L ++ F V     G+DG+ L      D ++LD+ L DI G E
Sbjct: 4   RVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIMLPDISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR AK   PV +L+      D++ G + GADDYI KP N  EL+AR++A++RR   
Sbjct: 64  VLRQLR-AKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVAW 122

Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  +      GDL V    + +      + LT  EY+++++L     + + K   +  
Sbjct: 123 DQEVGMDDSRAYGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLMQW 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               R E   + +D+ I  LRKKL N    +  IETV G GY  R
Sbjct: 183 ALGRRLEAYDRTLDMHISNLRKKLGNDDPPR--IETVRGLGYSYR 225


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ + + + L L+   +       G + I+L K    D ++LD+ + ++ G E 
Sbjct: 4   ILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDGLET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R +R    + P+ +L+  +   D ++G   GADDY++KPF++  L+AR+ A+ RR +  
Sbjct: 64  CRKIREFS-NVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQIQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    ++ GD  +++D+ T++ +G  + LT KE+ ++E L        T++  L   +D 
Sbjct: 123 HGAKEVIRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVAWDI 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
               E++ +D  +  LR+KL  A+   + ++ TVWG GY
Sbjct: 183 NASTEIRTVDSHVRNLREKLKGASFPIEEHLATVWGIGY 221


>gi|296119479|ref|ZP_06838037.1| DNA-binding response regulator PrrA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967362|gb|EFG80629.1| DNA-binding response regulator PrrA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 228

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 127/230 (55%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A  I+  L++E++   + D G   + L +   +  I+LDL L  + G +
Sbjct: 3   RILIVEDDQDIASFIKRGLEAESYACDIADNGALALGLAQSNTYQLIVLDLSLPLLDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR A +  P+ +L+  ++++D++R L+ GA+DY+ KPF   EL+AR+R  ++ S  
Sbjct: 63  VLTKLRDAGVDVPIIVLTARTALKDRIRVLEGGANDYMPKPFQFAELLARVRLRLQASAT 122

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A++           +  G+L++++    V+V G    L+ +E  ++E         L++
Sbjct: 123 TAEAESPAAAKEYGTLHHGELTLDMRQHRVKVDGKWKDLSRRELGLLETFMRHPRMVLSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L+H++    +P   ++DV+I  LRKK+     G   +ET+ G GY L
Sbjct: 183 AQLLSHVWGLDFDPGSNVVDVYIATLRKKI-----GAQRLETIRGAGYRL 227


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +A  IEL LK+EN+ V+    G   +E  K  + D  ILD+ L DI GFE+
Sbjct: 6   VLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDIDGFEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R    + PV +L+  ++  DK+ GL  GADDYI KPF   EL+AR++A +RR    
Sbjct: 66  LKEIR-KDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFIRY 124

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + G  QS    L + G L +N +          + LT  E+ ++ +L+  K   ++ E  
Sbjct: 125 NDGSGQSSEDTLEIAG-LVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVISSENL 183

Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +  +     + V I  LR+KL    G K  I+TVWG GY + E
Sbjct: 184 FEQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   ++  L+   F V     GE+G+ L +    D I+LD+ L DI GF+V
Sbjct: 12  VLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFDV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      PV  L+   +  D V GL  G DDY++KPF+ E L+AR+RA++RR +  
Sbjct: 72  CRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKRD 131

Query: 121 -GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              AQS   ++   DL ++    TV   G  I L+  E++++  +       LT+   L 
Sbjct: 132 PNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLLE 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++      + +I++ ++  LR+KL     G N I T  G GY LR    D+
Sbjct: 192 NVWGWDYAGQSQIVETYVSYLRRKLDPF--GPNLIHTQRGVGYALRVKEDDK 241


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|260776875|ref|ZP_05885769.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606541|gb|EEX32815.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++  A  +          + V + G+ G+      ++D II D  + ++ G 
Sbjct: 1   MKLLLVEDNQEQADFLRQSFSQSGHQIDVVENGKLGLISVMQSDYDVIITDRMMPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++A+R +   TP+ ILS + S+E++V GL++G DDY+ KPF   EL+AR+  +  R+ 
Sbjct: 61  QMVKAIRSSGKETPILILSALDSVEERVNGLRNGCDDYLVKPFAFSELLARVELLALRAN 120

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++      ++V  DL ++L ++  +     I    +E+Q+++ L       +T+ M L 
Sbjct: 121 SNSDKTDSQVLVIDDLELDLLSRQAKRGDTVISFNNREFQILQYLMNNAGRVITRAMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    +P+  +IDV I +LRKK+ +  G    + TV G GY+L+
Sbjct: 181 KVWSFSFDPQTNVIDVHISRLRKKI-DLDGHTPLLHTVRGAGYILQ 225


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A   +PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTAH-QSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQ 219


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK++ + I++ L++E +N+     G + + L     FD IILD+ +  + G   
Sbjct: 5   ILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLDGISA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R    + P+  LS       K+ GL  GADDYI+KPF   EL+AR++A +RR +  
Sbjct: 65  CLKIR-EDYTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRRYKKF 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S I   +L++N D   V V+G +I LT KE+ ++E L+  +    + +     
Sbjct: 124 NVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQKLYET 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++ +       I V I  LR+K+        YI+TVWG GY
Sbjct: 184 IWNEQFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGY 225


>gi|238791834|ref|ZP_04635471.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
 gi|238728938|gb|EEQ20455.1| Two-component response regulator of virulence determinant [Yersinia
           intermedia ATCC 29909]
          Length = 223

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DL L   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLSLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   +  E   IDV + +LRKKL     G+  I T+ G+ Y
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQRY 218


>gi|325122687|gb|ADY82210.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 238

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ I   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHIYDDGYLKVDVTQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LITTIRGMGY 253


>gi|259417907|ref|ZP_05741826.1| DNA-binding response regulator [Silicibacter sp. TrichCH4B]
 gi|259346813|gb|EEW58627.1| DNA-binding response regulator [Silicibacter sp. TrichCH4B]
          Length = 221

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           MR LL+ED+  LA+++   L     + +V D   D     +     E+D I+LD+ L D 
Sbjct: 1   MRYLLVEDNDQLANAV---LDRLTLDGHVVDRAPDLGTADDFIATTEYDMILLDIMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + L+A R A+ +TPV +L+  S + D+V  L  GADDYI KPF+  EL AR RA+ R
Sbjct: 58  DGRQFLQAHRTAQRNTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A +L   GD+  +  A T+ V G  + L  +E ++ E+     +   +K   ++ 
Sbjct: 118 RRSGGASNLHKYGDVVFDPLACTLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+    +     I+V++ +LRK L    G +  I TV G GY L
Sbjct: 178 LFSYDVDASENAIEVYVGRLRKHLE---GAQAQIVTVRGLGYRL 218


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 75  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +A     I TVWG GY
Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGY 240


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + I L+EDD  + + +   LK E +   + D  EDG +L +    D  ILD+ L  + G+
Sbjct: 3   VHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R  +   P+ I+S      DK+ GL+ G DDY++KPF+  EL+AR++ + +RS 
Sbjct: 63  EFCKKIR-NESDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRST 121

Query: 121 GHAQSLIVTGDLSVNL-----DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H Q  I    + V+      + + V  +G     T KEY M+ LL+   N   ++E  L
Sbjct: 122 SHRQDEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++        + +D  I ++RKK+ N       +ETVWG GY LR++
Sbjct: 182 MKIWGNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKD 225


>gi|293396538|ref|ZP_06640814.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291420802|gb|EFE94055.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 204

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 4/192 (2%)

Query: 31  DLGEDGIELCKF---YEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDK 87
           D  ED  E   F   +  D  I+DLGL    G  ++R  R  ++  P+ +L+   S +DK
Sbjct: 9   DAAEDAKEADYFLQEHAPDIAIVDLGLPGEDGMSLIRRWRAHQVKLPILVLTARESWQDK 68

Query: 88  VRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHR 147
           V  L++GADDY++KPF+ EE++AR++A++RR+ G A  +IV     ++L  + + V    
Sbjct: 69  VAVLEAGADDYVTKPFHLEEVIARMQALMRRNSGLASQVIVLPPFQIDLSRRELSVNDRP 128

Query: 148 IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG 207
           I LT  EY +IE L       ++K+  +  LY   +  E   IDV + +LRKKL  A   
Sbjct: 129 IKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKL-QAEYP 187

Query: 208 KNYIETVWGRGY 219
           +  I TV G+GY
Sbjct: 188 QEVITTVRGQGY 199


>gi|284035398|ref|YP_003385328.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814691|gb|ADB36529.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ LA SI   +  + +         +  E    Y +D +I+DL L D  GF
Sbjct: 1   MKVLVVEDEQGLAESITEYMVKDGYVCETASTFREAEEKIHLYTYDCVIVDLTLPDGNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++ AL+    +T V I+S   ++EDK+RGL+ G+DDY++KPF+  EL AR+++++RR +
Sbjct: 61  QIIEALKRLIATTGVIIISARDALEDKLRGLEIGSDDYLTKPFHLSELNARVKSLLRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + I   ++ V    + V V GH   L+ KEY ++       +  LTK     HL+ 
Sbjct: 121 FGGHTEIRFREIVVVPHNRNVYVNGHLTTLSRKEYDLLLYFLSNVDVALTKASIAEHLWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D  +   ++   I  LR+KL    G  +Y+++++G GY
Sbjct: 181 DNIDSADSFDMVYSHIKNLRRKLLE-KGAADYVQSIYGIGY 220


>gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 239

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLIERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++LI  G  S+NL  + +      I LT  E+ +++ L L     L+++  
Sbjct: 127 EVPGAPAAEENLIEFGRFSLNLATREMSEGDKTISLTSGEFAVLKALVLHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMIELDAASPRYIQTVWGLGYVF 233


>gi|241894797|ref|ZP_04782093.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241872009|gb|EER75760.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 271

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 18/243 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+ +++  + +  K E ++V     GE+G++L  F E    +DA+ILDL L  
Sbjct: 30  MKLLMIEDNTSVSEMMGMFYKKEKWDVTNAYDGEEGLKL--FNENAQTWDAVILDLNLPK 87

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V   +R      P+ +L+   S  D+V G   GADDY++KPF+   L+ARI+AI 
Sbjct: 88  VDGMQVAMKIREVSAEVPLIMLTARDSDSDQVLGFDVGADDYVTKPFSPITLIARIKAIH 147

Query: 117 RRSR----GHAQSLIVTGDL---SVNLDAKTVEVQGHRI---HLTGKEYQMIELLSLRKN 166
           RR+      H + +I   D+   +  L+++T E   + +    LT KE+ ++ +LS ++ 
Sbjct: 148 RRAMMQPVSHEEGVIDDFDVQTRTFKLNSRTREAYLNDVLIPDLTPKEFDLLRVLSKKQR 207

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +++  L  ++D     + + +D  + KLR+K+     G   I+TVWG GY   ++  
Sbjct: 208 QVFSRDQLLQLVWDYEYFGDERTVDAHVKKLRQKIEKV--GPQVIQTVWGVGYKFDDSNV 265

Query: 227 DET 229
            ET
Sbjct: 266 PET 268


>gi|225569040|ref|ZP_03778065.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM
           15053]
 gi|225161839|gb|EEG74458.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM
           15053]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK + + I + LK E +  YV    E+   L      D I+LDLGL D  G EV
Sbjct: 7   ILIVEDDKYILNFISMTLKKEGYGYYVARTVEEAQSLFYANRPDMILLDLGLPDGDGMEV 66

Query: 63  LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +R +R V++I  P+ ++S     ++K+  L +GADDY++KPF   EL+AR+R  +R+   
Sbjct: 67  IRNVREVSEI--PIIVVSARQEEKEKIEALDAGADDYVTKPFYMGELMARVRVGMRKLGN 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G   ++ V  +L V+   + V V G  +HLT  EY+++ LL   +   LT    +  
Sbjct: 125 IRAGETDTVFVKEELLVDYGKRKVTVGGEEVHLTPIEYKILLLLIANQGKVLTHNYIIRE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +   + VF+  LR+K+        +I T  G GY
Sbjct: 185 IWGYSGEIDAGNLRVFMATLRRKIEKDPADPRFILTEIGVGY 226


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++       L+   F V + D G +G+EL +    D +ILDL L  + G EV
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR       + +L+  S   D+V GL+ GADDY+ KPF+  ELVAR+ AI+RR R  
Sbjct: 65  AARLR-QDSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRST 123

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  T     + ++ D + V V    I LT  E+ ++  L+ R    L++E  L+ ++
Sbjct: 124 TPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   +++DV++ ++R+KL  A  G + I+TV G GY
Sbjct: 184 GNDFYGTDRVVDVYVGQVRRKL-EAVAGVSLIQTVRGVGY 222


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 58  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 117

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 118 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 176

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 177 ALNSTLEISG-LRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 235

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 236 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 273


>gi|330888203|gb|EGH20864.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330988448|gb|EGH86551.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 230

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + GH + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|323698056|ref|ZP_08109968.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323457988|gb|EGB13853.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 232

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ L   +   L   +F       G   +E  +      I+LD+ +    G EV
Sbjct: 7   ILIIDDDQKLRDLVAEYLGEYDFPTATLPSGMKAVETIRSLNPSVIVLDVMMPGKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR +RV + +TPV +L+      D++ GL+ GADDY++KPFN  EL+ARI+A++RR    
Sbjct: 67  LRDIRV-EFATPVIMLTAKGEDTDRIVGLELGADDYMAKPFNPRELLARIKAVLRRVEAC 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R    + I  G L +NL  + +E+ G  + L   E+++++ L    +  L+++  ++ 
Sbjct: 126 EERRAEITAIHAGGLVLNLARQVLEIDGGEVELAPTEFRLLKALMGHADRALSRDELMDM 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D       + IDV + KLR  L         I TVWG GY+ 
Sbjct: 186 AWDKDFAAYDRSIDVHVSKLRSLLKPYPAHAKRIRTVWGTGYMF 229


>gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 231

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I L ++   FNV  TD GE  +EL +    D +ILD+ L  I GF V
Sbjct: 4   ILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 64  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 124 KKELELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227


>gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1044]
          Length = 233

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 11  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 71  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 130 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 189 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 226


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  116 bits (291), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 130/223 (58%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIR-EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++    T    +S+N+  + V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGEK---RKLIKTVWGIGYKL 221


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ AL   +   L+       +   G + +   +      IILD+ L D  GF +
Sbjct: 33  VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVARI+A++RR+ G 
Sbjct: 93  CRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGR 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY--D 180
            Q +   G + ++     V   G R+ LT  E++++  L+       +++  L+ ++  D
Sbjct: 153 RQQV---GPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGED 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P  + +DV +  LR+KL        +I TV G GY L
Sbjct: 210 AFGDP--RTVDVHVRHLREKLERNPSQPEWILTVRGHGYKL 248


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|289551804|ref|YP_003472708.1| predicted transcriptional regulator [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181335|gb|ADC88580.1| predicted transcriptional regulator [Staphylococcus lugdunensis
           HKU09-01]
          Length = 223

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 129/223 (57%), Gaps = 11/223 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+IEDD  +AH + L L   +    +   G++ IE  +  +FD I+LDL L ++ G EVL
Sbjct: 6   LIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSGEEVL 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             ++ A  ++ V ++S  + +E+KVR L SGADDY++KPF+ +EL ARI   +R  +   
Sbjct: 66  SYIK-AHANSRVVVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLRNLQQMP 124

Query: 124 QS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF---LNHL 178
           +   ++   +L+++   + V+V+   +++T  EY ++ L  L     ++K+     +  +
Sbjct: 125 RQGDILTWRNLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQKIYENIQGI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y G D      ++V I  +RKKL+ A   ++YI+TVWG G++L
Sbjct: 185 YLGDDNT----VNVHISNIRKKLA-AFSDESYIKTVWGIGFML 222


>gi|260549372|ref|ZP_05823591.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260407481|gb|EEX00955.1| response regulator [Acinetobacter sp. RUH2624]
          Length = 238

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ I   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHIYDDGYLKVDVTQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   + L L  E +NV +   G   +        D ++LD+ +  + G+E
Sbjct: 5   KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK +TP+ +L+      DKV GL+ GADDYI KPF+ +E+ ARI+A++RRS  
Sbjct: 65  VCRKIR-AKDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  V    +L ++++   ++V+G  +    KE +++  L+   N   T++  L+ ++
Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + IDV + +LR+KL  A+   N ++TVWG GY
Sbjct: 184 GFEYYGDSRTIDVHVKRLREKLEGASDKWN-LKTVWGVGY 222


>gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 18/231 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A   +  L + +F V + + G+ G+E+    E+D I+LDL L  + G+E
Sbjct: 3   RILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLMLPSMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A  + P+ I+S      DK+RG   GADDYI KPF   ELVAR++A + R   
Sbjct: 63  VCRRIREAS-NVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLSRYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +  H   L + G + +   ++ V V    +  T KEY ++  L    N    KE
Sbjct: 122 LVGQGHNGQHRDELRLNG-IRIEKQSRRVFVNEREVSFTAKEYDLLFYLVTHPNRVFRKE 180

Query: 173 MFLNHLYD----GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++     G D   V    V I KLR+K+        Y+ET+WG GY
Sbjct: 181 DLFEQIWGMDAIGSDHATVT---VHISKLREKIERDPSKPQYVETIWGVGY 228


>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
 gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
          Length = 266

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 122/235 (51%), Gaps = 9/235 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD+ ++  +   L+   F+V   D G  G  L   Y  D I+LDL L ++ G  +
Sbjct: 5   ILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + LR  +   S P+ +L+ +   +DKV G  SGADDY++KPF+ EEL AR++A++RRS 
Sbjct: 65  CQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G+   ++  G L++  +        H + LT  E++++  L  R   T+   +
Sbjct: 125 RAPIGTSGNHHEILSYGPLTLVPERFEAIWFDHPVRLTHLEFELLHCLLQRHGQTVAPSL 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++    + +++ I V +  LR KL        +I+TV+G GY L     D+
Sbjct: 185 ILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPTGDQ 239


>gi|312796926|ref|YP_004029848.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
 gi|312168701|emb|CBW75704.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+LIED+K +   +   L+++   V+  D G  G+        D +I+DLGL D  G +V
Sbjct: 8   IVLIEDEKQIRRFVGTSLQAQGMTVFDADTGRQGLVEAATRRADLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
           +R LR      P+ +LS  S  E KV  L +GADDY++KPF   EL+ARIRA + RR+RG
Sbjct: 68  IRELR-GWTDLPIIVLSARSQEEQKVAALDAGADDYLTKPFGVSELLARIRAQLRRRNRG 126

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G + V+L A+ V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GQDDMPQVQFGGIVVDLSARRVTRNGEVVHLTPIEYRLLVTLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPSHVESHHYLRIYMGHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|312112485|ref|YP_003990801.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217586|gb|ADP76190.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +  +I+  L+  ++ V     G + + +     FD IILD+ +  I G E
Sbjct: 5   KILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALRIIN-NNFDLIILDIMMEGIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  ++  P+  +S  +  EDK++ L  G DDYISKPF+ +EL ARI   +RR   
Sbjct: 64  LCSMIR-DRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREER 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++HLT KEY++++LL L KN   +KE     +
Sbjct: 123 IRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIMKLLMLNKNMVFSKERIFESV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E +++ +   I  +RKK+ +     +YI+T++G GY
Sbjct: 183 WGLDSESQLETVTESIKNIRKKIRSLDPEHSYIKTLYGLGY 223


>gi|89072466|ref|ZP_01159045.1| DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051998|gb|EAR57450.1| DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G E
Sbjct: 6   KILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVSWNPHLVLLDLGLPDADGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR +  R   
Sbjct: 66  FTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIR-VALRLHS 123

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H  +  V+    GD+ +++  +TV   G  I LT KEY+++ LL+      LT +  L  
Sbjct: 124 HNTATEVSQYRFGDVLLDMAMQTVMYNGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G        + + I +LR K+  +     YI T  G GY L
Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIEKSPAQPQYIITENGVGYRL 227


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVR-KDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    +    ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A  G+  IETVWG GY
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGY 224


>gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + +++ K +  D ++LD+ +    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKMAKDFRPDVLVLDVMIPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  EVLGRIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +V GDL +NLD + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WNYDFGGQANIVELYISYLRKKVD--AVHPPMIHTVRGAGYVIKP 244


>gi|315651479|ref|ZP_07904502.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
 gi|315486299|gb|EFU76658.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K L   +   LK+    V     GE GI+L +  + D IILD+ +    GFE
Sbjct: 3   RILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLAR-KQPDLIILDIMMPKADGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  A+R   +  P+  LS   S  DK++GL  G DDYI KPF  +EL+A+I A +RR + 
Sbjct: 62  VCNAIR-DDVLCPIIFLSARQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H ++ +  G+LS+N+   TV++  + + LT  EY ++E L+L      ++E  
Sbjct: 121 SQYINAEHKRNKLYFGELSINIKECTVKIGSNDLLLTRLEYNIVEFLALHAGQIFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    + +   +   I K+R K         YI TVWG GY
Sbjct: 181 YEKIWGYDSDGDSSTVVEHIKKIRAKFIEGGSDTEYISTVWGIGY 225


>gi|317047328|ref|YP_004114976.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948945|gb|ADU68420.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 224

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + L L+ E   +   +  + G+      + D +ILDLGL D  G + 
Sbjct: 4   ILIVEDEKEIRRFVRLALEGEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPDGDGNDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    S PV +LS  +  +DK+  L +GADDY++KPF   EL+AR+R  +RR +G 
Sbjct: 64  IREVRQWS-SMPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRRHQGS 122

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +++ G+++V+L A+ V   G  +HLT  E++++ LL       LT+   LN ++  
Sbjct: 123 QPDPVLSFGEVTVDLAARRVLRSGEEVHLTPTEFRLLSLLLNNAGKVLTQRQLLNQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL       N++ T  G GY
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPNHLLTETGIGY 220


>gi|256391218|ref|YP_003112782.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256357444|gb|ACU70941.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L  ++ + L +  + V V   G  G+ +      D ++LDLGL D+ G +
Sbjct: 3   RLLVVDDEAQLLVAVRINLSARGYEVSVAPDGTTGLAVAARRPPDLVVLDLGLPDMDGVQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ +LSG +   DKV  L +GADD+++KPF+ +EL AR+R+++RR+  
Sbjct: 63  VIDGLR-GWTTVPILVLSGRTESWDKVEALDAGADDFVTKPFDMDELAARVRSLLRRAEP 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQ-------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +  +I  G   V+L A+TV+            + LT  E+ ++E+L    +  ++ +
Sbjct: 122 ENATGPVIQVGHHLVDLAARTVKRAPGAPSDVPESVRLTRTEWAVLEMLLRHPDRLVSSK 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L H++    EPE   +  ++ +LR+KL         + T  G GY
Sbjct: 182 QLLAHVWGTEHEPEGSYLRFYLARLRQKLEPEPSTPRQLLTEPGMGY 228


>gi|226330037|ref|ZP_03805555.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
 gi|225200832|gb|EEG83186.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   + L L+SE F VY  +  + G+      + D +ILDLGL D  G   
Sbjct: 6   ILIIEDEKEILRFVRLALESEGFRVYEANECQRGLIEAASRKPDLVILDLGLPDKDGLCF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           ++  R    STP+ +LS   S +DKV+ L +GADDY++KPF   EL+ARIRA +RR  + 
Sbjct: 66  IQDFRQWS-STPIIVLSARDSEQDKVKALDAGADDYLTKPFGISELLARIRASLRRFVKQ 124

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             QS   T GD++++   + V  Q   +HLT  E++++  L       LT+   + H++ 
Sbjct: 125 ETQSTQFTFGDITIDWVNRIVTRQNDPVHLTPTEFRLLSELVNNSGKVLTQRHLMQHVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 185 PNFVEHSHYLRIYMGHLRQKLETDPACPVHLMTETGIGY 223


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + + + +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + F+V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + LR   +   P+ +L+   +++D+++GL +GADDY+ KPF   ELVARI AI+RRS
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  +  +   DLS +LD   V   G  + L     +++ +L  R    + +E     L+
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQSLKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G D P+   +   + +LR+ L +       + T+ G GY L E+A
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVL-DKPFPTPLLHTIHGVGYRLAESA 224


>gi|325678480|ref|ZP_08158095.1| KDP operon transcriptional regulatory protein KdpE [Ruminococcus
           albus 8]
 gi|324109791|gb|EGC03992.1| KDP operon transcriptional regulatory protein KdpE [Ruminococcus
           albus 8]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I   LK  ++       G + + L   ++ D IILDLGL DI G EV
Sbjct: 6   VLVVEDDKPIRNLITTTLKMNDYRFITAVRGREAVMLSASHKPDIIILDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +  +R      P+ I+S  S   DK+  L  GADDY++KPF+ +EL+AR+R I RR   S
Sbjct: 66  IEHIRTWS-DVPIIIVSARSEDRDKITALDKGADDYLTKPFSVDELLARLRVIQRRLMKS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + +  V G L ++  +  V +    +HLT  EY+++ LL+      LT +  +  ++
Sbjct: 125 ENISVTEFVNGRLRIDYASGCVHLDDEELHLTPIEYKLLCLLAKNVGKVLTHKYIIQSVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +     + VF+  LRKKLS+++  +  I+T  G GY
Sbjct: 185 GTPADNSEASLRVFMATLRKKLSDSS--QALIQTHIGIGY 222


>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
 gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G ++++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L  E + V   + G  G  L     +D +ILD  L    G +
Sbjct: 4   RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR  R    +TPV  L+   ++ ++V GL +GADDY++KPF  +EL+AR+RA++RR  G
Sbjct: 64  LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRP-G 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A  +++   D+  +L+ + V   G  + LT KE+ ++          L++    + ++D
Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +     ++V + +LR KL   A G   I+T+ GRGYVL   + DE
Sbjct: 183 DSYDGLSNTLEVHVKELRHKLE--ACGPRVIQTLRGRGYVLETTSDDE 228


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LLIEDD A+   ++  ++ E + V     G +G+   +   FD +++D  L ++ G 
Sbjct: 36  VKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPEMDGL 95

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+ ++S      DKV GLQ GADDYI+KPF+ EEL AR+ + +RR R
Sbjct: 96  TVCQNIRWES-DVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWR 153

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        Q+    G L ++   + V +    I LT KE+ +++LL+   + T TK+ 
Sbjct: 154 RYNKQEEVEEQTAYANG-LIIDWQREIVSINQQEIALTQKEFALVKLLAKNPSQTFTKKE 212

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++      +   + V I  LR+KL+++     +I+TVWGRGY
Sbjct: 213 LYQYIWQQATLEDTHTVTVHIKALREKLNDSVRHPYFIQTVWGRGY 258


>gi|42523251|ref|NP_968631.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus
           HD100]
 gi|39575456|emb|CAE79624.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus
           HD100]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+ ++   + + L++  + V     G DG+        D ++LDLGL D+ G  
Sbjct: 7   KVLVIDDEASIRKLLRVSLEANAYQVEEAPSGRDGLAAAASLRPDLVLLDLGLPDMTGLH 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV +L+   S  DK+  L  GADDYI+KPF+  EL+ R+R  +R S  
Sbjct: 67  VLSELR-SWSKVPVIVLTVQDSDNDKIAALDGGADDYITKPFSVPELLVRMRVALRHSPQ 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +A  ++ +V+G L V++   TV V+G  + LT  E+ ++++L   K+  +T  M LN ++
Sbjct: 126 NAAEKTEMVSGPLKVDVPGHTVTVEGELVKLTATEFNILKVLIKNKDKVVTHRMLLNEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + V++  LRKKL         I T  G GY L
Sbjct: 186 GPNSVEHTHYLRVYVGGLRKKLHIREELAEIIVTEAGVGYRL 227


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RI++++DD  +   +   L  E F V    L ED   L +       D I+LDL L    
Sbjct: 11  RIVVVDDDARIRDLLRRYLSQEGFEVL---LAEDAKALNRVLTRDTVDLIVLDLMLPGED 67

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 68  GLSICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRR 127

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +      ++  G    +L  + +   G +I LT  E+ M++ L       L+
Sbjct: 128 RPAPEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLS 187

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  L  GR+ EP  + +DV I +LRK L        YI+TVWG GYV 
Sbjct: 188 RDK-LAQLARGREFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVF 238


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
 gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F+V   + GE+G+ L      D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLT-DGIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKRLR-ENWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQTS 121

Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +        I   D+ V    +    QG ++ LT  E+ ++         TLTKE   
Sbjct: 122 SSNKASKSSDCIEYQDIQVYPGKQEAFCQGKQLDLTTTEFALLTHFVQNPGETLTKEALS 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   R     + ID+ +  LRKKL   A GK+ I+T+ GRGY+L E
Sbjct: 182 LDVLGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTLRGRGYLLVE 229


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 237

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++L L+ E +++     G  G+ + +   +DA+ILDL L  I G E
Sbjct: 6   KILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++L +         L+++  A+ V +    I LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++  + E     ++  I +LR K+         I TVWG GY
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGY 229


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR  RG
Sbjct: 86  CRRLR-AESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  G+L V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 145 SANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 254


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ +   +   L+   F V V   G +G+     +E D ++LD+ +  I G E
Sbjct: 7   RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR      P+ +L+ +   E+++ GLQ GADDY++KPF+ +EL  R+ +++RR+R 
Sbjct: 67  VCKRLRQVS-QVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARM 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A +++V GDL + + A+T  + G  + LT +E+ ++           ++   L  
Sbjct: 126 PRPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   D  +   + V + +LR+K+         + TVWG GY
Sbjct: 186 VWSW-DFGDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGY 226


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +   I+  L+ E ++V     G++ +   K  +   IILD+ + ++ G EV
Sbjct: 8   ILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEALIQSK-RQPSLIILDVMMPEMDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + LR      P+  LS   S  D+++GL +G DDY+ KPF+  EL ARI A +RR  R 
Sbjct: 67  CKQLR-ETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRREQRI 125

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H Q    ++    L+++     V   GH + LT KE+Q++ELL++ +    ++E     L
Sbjct: 126 HTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQIYEKL 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + +   I   I K+R KL+  A  +++I+TVWG GY
Sbjct: 186 WGLDADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGY 226


>gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
 gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
           25986]
          Length = 259

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 127/262 (48%), Gaps = 47/262 (17%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  + L L+ E + V     G   ++L     +D I+LD+ L  + G E
Sbjct: 3   RILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLALERNYDLILLDVLLPQLNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K   PV +++   ++ DKV GL +GADDY++KPF  EEL ARIR  ++RS  
Sbjct: 63  VLRRVRKHK-DVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVALKRSEA 121

Query: 122 -------------------------------------HAQSLIVTGDLSVNLDAKTVEVQ 144
                                                 + + +  G ++++ D + V V 
Sbjct: 122 VRAASGVGGIGTGAAGGTGVGATAMPPVSDSTQVSASLSPATLAVGSVALDPDRREVTVG 181

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMF----LNHLYDGRDEPEVKIIDVFICKLRKK 200
           G  I LT +E+ ++ LL     T LT+E      L + Y G    +   +DV I  LR K
Sbjct: 182 GSPIALTAREFDVLALLMAHAETVLTRERIAHEALGYEYMG----DTNNVDVHIAHLRAK 237

Query: 201 LSNAAGGKNYIETVWGRGYVLR 222
           + + AGG   I+TV G GYV R
Sbjct: 238 IED-AGGARIIQTVRGVGYVCR 258


>gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+      +   L    + V     G  G    +  ++D +ILD+ L    G+
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K  TPV  L+    + D+V+GL+ GADDY++KPF+  EL+AR+R+I+RR +
Sbjct: 61  TLLQNLR-RKRCTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L  +    Q   I LT KE+ ++ LL  ++   L +    + ++D
Sbjct: 120 PREFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ +A   K  I TV G GYVL
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKIDDAYEPK-LIHTVRGMGYVL 219


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 20  ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 80  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 138

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV+V G +I LT KE+ ++ LL+         E 
Sbjct: 139 TLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVEN 198

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 199 IFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 246


>gi|213158519|ref|YP_002319817.1| two-component system regulatory protein KdpE [Acinetobacter
           baumannii AB0057]
 gi|215483027|ref|YP_002325232.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB307-0294]
 gi|301344997|ref|ZP_07225738.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB056]
 gi|301510123|ref|ZP_07235360.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB058]
 gi|301596364|ref|ZP_07241372.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB059]
 gi|332850695|ref|ZP_08432942.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6013150]
 gi|332867025|ref|ZP_08437322.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6013113]
 gi|213057679|gb|ACJ42581.1| two-component system regulatory protein KdpE [Acinetobacter
           baumannii AB0057]
 gi|213987400|gb|ACJ57699.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB307-0294]
 gi|332730532|gb|EGJ61848.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6013150]
 gi|332734218|gb|EGJ65347.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6013113]
          Length = 238

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGRE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDITQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 267

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IEDD+ +   I  ++    +       G + +       +D +++DL L  + G 
Sbjct: 42  LRILIIEDDEDINRLICNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLPGLSGE 101

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +   +   P+ I+S     + K+  L++GADDYI+KPF+ EE+ ARI + +RR R
Sbjct: 102 DILKIV-TKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYR 160

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +L+   D+ ++ DAK V V G+ + LT +EY+++ LL    N   TK     
Sbjct: 161 DIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFE 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +   I+V +  +R KLS A   + YIETVWG GY L+
Sbjct: 221 SVWNEPFYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKLK 266


>gi|229917890|ref|YP_002886536.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469319|gb|ACQ71091.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 224

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL EDD+ L   +   L    + V     GE+ ++       D +I D+ +  + G E+
Sbjct: 4   ILLAEDDETLGGLLVDYLTVAGYRVLHAKDGEEALDWLDREPIDLLITDVMMPRLDGREL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR A  + PV +L+ + ++ DK RG  +GADDY+ KP + EEL  RI A++RR+R H
Sbjct: 64  TGQLRDAGYTLPVLMLTVLDAMNDKKRGFHAGADDYVVKPIDLEELELRIEALLRRARIH 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   D  ++    T+E     I L  KE++++  L+   N   T++  L+ ++   
Sbjct: 124 HSHQIQLNDCVLDETTMTLETTSETIELPRKEFELLYFLATHLNQVFTRQQLLDRIWGYE 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E E + +DV I +LR +L      +  I TVWG GY L
Sbjct: 184 TESETRTVDVHINRLRARLKPIDAFQ--ISTVWGLGYRL 220


>gi|308187698|ref|YP_003931829.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058208|gb|ADO10380.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  GI+     EF A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLSQYLIAEGFDAQLVLTGSAGIQGALSGEFTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-QNSRIPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A+  +  GDL++N   +  E QG    LT  E+ +++LL    +  ++K+   
Sbjct: 120 EQVPQPDAKEPLRWGDLTLNPATRMSEWQGKTFDLTASEFNLLDLLLRAPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KLS        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLSALTADSINIETVRSIGYRIR 226


>gi|229829767|ref|ZP_04455836.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
 gi|229791756|gb|EEP27870.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++A   +  L+   F+V +   G  G++     ++D  ILDL L    GFE
Sbjct: 3   KVLIIEDERSIAELEKDYLELSEFSVDIETDGAAGLKKALEGDYDIFILDLMLPGADGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R  K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R SR
Sbjct: 63  ICQKIREVK-DRPILMVSARKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYSR 121

Query: 121 GHAQSLI------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S I      + G L ++   + V + G     T KEY+++  L+   N   +K+  
Sbjct: 122 LVGASPIKNDCLEIRG-LKIDKSDRRVWINGEERTFTAKEYELLLFLAEHPNHVFSKDEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++     EV  + V I ++R+K+   +    YIET+WG GY  R
Sbjct: 181 FREIWNMSSNGEVATVTVHIKRIREKIEMDSSKPQYIETIWGVGYRFR 228


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 114/210 (54%), Gaps = 6/210 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   ++  L+ E + V V   GE+ + +      D I+LDL L  + GFE
Sbjct: 3   RVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      DK+ GL+ GADDY++KPFN  EL AR++AI+RRS+ 
Sbjct: 63  VCRNIRKTS-DVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQS 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +       +I   DL ++L    V V+   + LT KE+ ++ L++       ++E  L 
Sbjct: 122 SSGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAG 206
           H++      + + +DV I  LR+K+    G
Sbjct: 182 HVWGYDYYGDARTVDVHIRHLREKIEPDPG 211


>gi|153854044|ref|ZP_01995377.1| hypothetical protein DORLON_01368 [Dorea longicatena DSM 13814]
 gi|149753426|gb|EDM63357.1| hypothetical protein DORLON_01368 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     +  D ++LDLGL DI G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAILETSSHNPDIVLLDLGLPDIDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLSMM 124

Query: 119 -SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                A++++ V G L V+  A    +    +HLT  EY+++ LL+      LT      
Sbjct: 125 QKVSPAEAVVFVNGKLRVDYAAGCAYLNEEELHLTPIEYKLLCLLTRNIGKVLTHTFLTQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 SIWGSSWDNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227


>gi|15614827|ref|NP_243130.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174883|dbj|BAB05983.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 109/218 (50%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I + +    + V     G   ++  K   FD ++LD+ L D+ GF 
Sbjct: 4   RVLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  +    + +L+ +   E  VRGL  GADDYI KPF  +EL ARI +++RR  G
Sbjct: 64  LIAQLRHLQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVLRRKGG 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A        L VN  A  +   G  + LT  EY+++  L      T T+E  L+  +D 
Sbjct: 124 LASRKGEEKQLKVNEKAHDISFAGQSLGLTKTEYRVLHRLLSNPGRTYTREQLLDLAWDR 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + E   + +D  I  +R KL         I+TVWG GY
Sbjct: 184 QVEIYDRNVDAHIKNIRDKLEKVGADSTVIQTVWGVGY 221


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++ED+K L   I   L    + V   + GE  +++     +D I+LDL L  + G 
Sbjct: 21  LKLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLPGMDGM 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S I DKV GL SGA+DY+ KPF+ +EL AR+R++ RR  
Sbjct: 81  EILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRKF 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L  +   +    + + + LT KE  ++E L L +   +++E  + H++D
Sbjct: 141 VQKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVWD 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +     I V +  LRKKL  A  G + I    G GY
Sbjct: 201 SSVDSFSGSIRVHMSSLRKKL-KAGLGYDPIVNKIGEGY 238


>gi|302529147|ref|ZP_07281489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438042|gb|EFL09858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD A+   ++  L+     V       DG    +    D ++LDLGL D+ G E
Sbjct: 3   KVLVVEDDAAIGSVLDSALRGHGHTVQWC---RDGRSALRETAADLVLLDLGLPDVDGVE 59

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A     + IL+  +   D V GL++GADDY++KP    EL+AR+RA +RR   
Sbjct: 60  VCRRLRSALPGAVLVILTARADEMDVVVGLEAGADDYLTKPIRLAELLARVRAHLRRGAP 119

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A S  V   G L V++ ++ V + G  + L  +E+ ++  L+++    ++++  ++ ++
Sbjct: 120 AAPSTPVVRIGALEVDIASRRVSLGGREVVLRAREFDLLARLAVQPGQAVSRDTLMSDVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGK---NYIETVWGRGYVL 221
           D       K +DV I  LR+KL++AA        I T+ G GY L
Sbjct: 180 DSHWHGSTKTLDVHIAALRRKLASAAESPYEVPRIATLRGHGYRL 224


>gi|237712060|ref|ZP_04542541.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|265751762|ref|ZP_06087555.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|229453381|gb|EEO59102.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236554|gb|EEZ22024.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+++L+ SI   L SE +        +D       YE+D ++LDL L    G 
Sbjct: 1   MKILIIEDERSLSDSIVAYLSSEKYLCEQAFTYDDAKMKVNLYEYDCVLLDLMLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR +R  +    V I+S   S+ DKV+GL+ GADDY++KPF+  EL  RI AI+RR  
Sbjct: 61  DILRDIRKQRNPVGVIIVSAKDSLGDKVKGLEIGADDYLAKPFHLPELSMRIYAIIRRKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
             A +++ +  + ++L  K+  V    I LT  EY+++      K+  ++K     HL  
Sbjct: 121 FAANNILESNGVRIDLLNKSAVVNETPIELTKSEYELLLFFIGNKDRVISKSAMAEHLSG 180

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D  D  +   +   I  L+ KL+ AAG K+ I+ V+G GY   E
Sbjct: 181 EMADMMDNHD--FVYTHIKNLKAKLA-AAGCKDCIKNVYGTGYKWTE 224


>gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
 gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A +++  ++ E FN+ + +  E+  ++    E+D I+LD+ L D  G+E 
Sbjct: 4   ILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVMLPDGNGYEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR     TPV  L+      + V GL  G DDYI+KPF   EL++RI AI+RR   S
Sbjct: 64  LKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKGKS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + ++   ++S++     V      I LT  EY+++ +L   KN  L++   L  L+
Sbjct: 124 QDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILEKLW 183

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   D      + V+I +LR+K+ + +    YI TV G GY
Sbjct: 184 DVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGY 224


>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  I+  L +  + V V           +   FD  ++D+GL DI G 
Sbjct: 1   MRILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  K+  PV +L+   S+ED + GL  GADDY++KPF   EL+ARIRA++RR+ 
Sbjct: 61  TLVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
               + +    L +N  + T  +    + LT +E+ ++E L +     ++K+  L +L  
Sbjct: 121 SITSTELQHDRLVLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D    P    I+V + +LR K+   A G   I TV G GY
Sbjct: 181 WDKNITPNA--IEVHVSRLRAKI---APGGIEIRTVRGIGY 216


>gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli]
          Length = 239

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 232


>gi|332759462|gb|EGJ89770.1| sensor protein phoQ [Shigella flexneri 2747-71]
          Length = 709

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 6/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKL 201
           LY   +  E   IDV + +LRKK 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKF 201


>gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   ++ +LK   + V     G + + L +   FD I+LDL L  + G E
Sbjct: 3   KILIVEDDPKINKMVQTLLKKNEYEVVAAFSGTEALLLLEKESFDLILLDLMLPGLSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           +L  +   +   P+  +S    +  K+  ++ GADDYI+KPFN EEL+ RI A++RR ++
Sbjct: 63  ILVKIN-EQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      ++    DL ++ +   V +    I LT KEY ++ELL        TK+     
Sbjct: 122 GMTIDKTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFES 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + +++ V +  LR KL +   G+ YI+TVWG GY +++N
Sbjct: 182 VWSEEYIMDERVVTVHVSNLRNKLKH---GEEYIKTVWGIGYKMQDN 225


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V+    G + +E  +  + + I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        + I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 123 VAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235


>gi|315501605|ref|YP_004080492.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315408224|gb|ADU06341.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + L++  ++V V D G   ++    +  D ++LDLGL D+ G +
Sbjct: 3   RILVVDDEPQILRALRINLRARGYDVEVADSGAAALKAAAGHPPDLVVLDLGLPDLDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V+R LR    + P+ +LSG +  EDKV  L +GADDY++KPF  +EL+ARIRA+ RR   
Sbjct: 63  VIRGLR-GWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRRLAP 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +  G  +V+L  +TV    G  + LT  ++ M+E L       +++   L+ +
Sbjct: 122 ATPAVPALRIGRNTVDLADRTVTRDDGVEVKLTPTQWAMLEKLLRNPGKLVSQRQLLHDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   +  ++ +LR+KL +      ++ T  G GY  R 
Sbjct: 182 WGPEYHHETNYLRQYMAQLRRKLEDDPARPRHLITEPGMGYRYRP 226


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT-----T 168
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+           
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++++ +  Y+G +      + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGN-----TVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|206563997|ref|YP_002234760.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198040037|emb|CAR56018.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  I++    + D++ GL SGADDY+ KPF  +EL+ARIRA+ RR  
Sbjct: 61  SVLAALRRRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVSRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V + G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPVKHLVWLDGDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL+  +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + ++T GDL ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYAL 225


>gi|317497326|ref|ZP_07955649.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895395|gb|EFV17554.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           M+ILL+EDD  L  +I++ L+ EN+ V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 1   MKILLLEDDLELCKNIKISLEKENYMVDCCNDGETAMLYALNTDYAYDIAIVDRMLPIID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++++R   IS P+ I++ MS+++++V GL  GADDY+ KPF+ +EL+AR+RA+ RR
Sbjct: 61  GLTIIKSMRRKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +  GDL+ + D++T+    + + LT KE ++  +      T  ++E  +  
Sbjct: 121 PANIQLSSKLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++    E E   +D +I  LRK+L         I TV+G GY L +    ETC
Sbjct: 181 IWGSSSEVETGNVDSYISFLRKRLKELKSSCK-ITTVYGAGYKLEK----ETC 228


>gi|226953156|ref|ZP_03823620.1| response regulator [Acinetobacter sp. ATCC 27244]
 gi|226836086|gb|EEH68469.1| response regulator [Acinetobacter sp. ATCC 27244]
          Length = 243

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 126/228 (55%), Gaps = 14/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   IE  LK E   V     G+  IE+      D I+LD+ L ++ G+EV
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R  K  TPV +L+ +    DKV  L+ GADD++ KPFN  E+VAR++A++RR++ +
Sbjct: 75  LNKIR-QKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQQN 133

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEM 173
            Q+L   I+  ++ +N D  +V V  HR      ++LT  EY+++ L+    +   T+  
Sbjct: 134 TQALNKNIIYKNIEINTDIHSVYV--HRDTQKVLLNLTLTEYKILLLIIDHPHKVFTRSE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +NH     D  E + +D  + KLRKKL    G ++ +  V G GY L
Sbjct: 192 LMNHCLPDSDALE-RTVDSHVSKLRKKLEE-QGLQHMLINVRGVGYRL 237


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 129/222 (58%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  SKMIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++  
Sbjct: 125 NVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 221


>gi|153820201|ref|ZP_01972868.1| transcriptional regulator CpxR [Vibrio cholerae NCTC 8457]
 gi|126509256|gb|EAZ71850.1| transcriptional regulator CpxR [Vibrio cholerae NCTC 8457]
          Length = 224

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LLI+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E L
Sbjct: 1   LLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMETL 59

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           + LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++   
Sbjct: 60  KRLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNGL 118

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    + 
Sbjct: 119 TPKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEVL 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 179 GKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 220


>gi|160897958|ref|YP_001563540.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160363542|gb|ABX35155.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+  +++  L      V     G   +      E DA++LDL L  + G 
Sbjct: 13  MQLLLVEDDNAMRTTLQRTLIRRGIQVETAADGPSALAQWLVREPDAVVLDLSLPGLDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV IL+   ++ D+V GL +GADDY++KPF+ +EL AR+RA++RRS 
Sbjct: 73  QVLERARGQGLRTPVLILTARGTVGDRVLGLNAGADDYLAKPFDLDELEARLRALLRRSS 132

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G L  +  +  +   G  + LT +E  ++  L  R    + KE   
Sbjct: 133 DSFAPKPPPETIAMGALRYDKTSGAIHRDGEIMELTPRELALMHALLARPGHAVAKERLF 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ G  + + + ++V   +LRKKLS   G    + T+ G GY+L+
Sbjct: 193 ALVFPGESDVQYEAVEVVAYRLRKKLS---GTGVQLVTLRGLGYLLK 236


>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 257

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 3/181 (1%)

Query: 46  DAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK 105
           D +ILDL L D  G E    L+      PV +L+    + DKV GL+ GADDY+ KPF  
Sbjct: 77  DLVILDLMLPDGDGLEFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFET 136

Query: 106 EELVARIRAIVRRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
            EL+ARI+A +R + G   A  L+  G+L ++L  +TV+V G  ++LT KE+Q++  L+ 
Sbjct: 137 SELLARIKARLRANPGAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLAE 196

Query: 164 RKNTTLTKEMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +N  +T+E     L+ D +     ++IDV I  LR+K+        +I TV GRGY   
Sbjct: 197 NRNHLVTREEIRKRLWRDSKIYSWSRVIDVHIQHLRQKVEETPSQPRHIVTVPGRGYRFM 256

Query: 223 E 223
           E
Sbjct: 257 E 257


>gi|319786103|ref|YP_004145578.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464615|gb|ADV26347.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A ++   L+     V     G  G+ L   ++FDAI+LDL L  + G 
Sbjct: 1   MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHDFDAIVLDLNLPGMDGI 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  A+  TPV +L+   S+E+K+ G  SGADDY+ KPF  +E+  R+ A+ RR 
Sbjct: 61  EVCRKLRNEARKQTPVLMLTARDSLENKLAGFDSGADDYLIKPFALQEVEVRLNALARRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    ++ TGDL  NLD   V  +G  + L     ++++ L       +T++     ++
Sbjct: 121 KGVQTRVLNTGDLEYNLDTLEVRREGRLLQLNPTALKILQALMEASPAVVTRQELETRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G + P+   + V I  LR  + +      YI+T  G GY
Sbjct: 181 -GEELPDSDSLRVHIHGLR-AVVDKPFATPYIQTRHGIGY 218


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 129/222 (58%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  SKMIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++  
Sbjct: 125 NVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 221


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           +IL++EDD  ++  +  +++   + V     G + +  C   E  D ++LDL L  + G 
Sbjct: 9   KILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEAL-FCMERELPDCVLLDLMLPGMTGE 67

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            VL  +R   K   PV ILS   S++DKV+ L+ GADDYI+KPF+ EE++AR+ A +RR 
Sbjct: 68  AVLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRY 127

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              AQ++          +LS+   ++ VEV G  + LT  EY ++ LL        ++E 
Sbjct: 128 TKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREH 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++ G    E   ++V +  LRKK+  A   ++YI+TVWG G+ L
Sbjct: 188 LYEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKL 235


>gi|309778273|ref|ZP_07673202.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308913961|gb|EFP59772.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           M+ILL+EDD  L  +I++ L+ EN+ V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 1   MKILLLEDDLELCKNIKISLEKENYMVDCCNDGETAMLYALNTDYAYDLAIVDRMLPIID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++++R   IS P+ I++ MS+++++V GL  GADDY+ KPF+ +EL+AR+RA+ RR
Sbjct: 61  GLTIIKSMRRKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +  GDL+ + D++T+    + + LT KE ++  +      T  ++E  +  
Sbjct: 121 PANIQLSSKLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++    E E   +D +I  LRK+L         I TV+G GY L +    ETC
Sbjct: 181 IWGSSSEVETGNVDSYISFLRKRLKELKSSCK-ITTVYGAGYKLEK----ETC 228


>gi|229014970|ref|ZP_04172051.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746320|gb|EEL96242.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 207

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/195 (35%), Positives = 109/195 (55%), Gaps = 10/195 (5%)

Query: 34  EDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRG 90
           ED IE  K  E   FD IILD+ + ++ G +    +R  + + P+ +LS  S   DK++G
Sbjct: 12  EDAIEALKQLEEKEFDLIILDIMMPNMDGIKACMKIREER-TIPIIMLSAKSEDMDKIQG 70

Query: 91  LQSGADDYISKPFNKEELVARIRAIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQ 144
           L SGADDY+SKPFN  EL+AR+++ +RR           +++I  G+L++N DA+ V V+
Sbjct: 71  LTSGADDYLSKPFNPLELIARVKSQLRRYTKYNTETNKNKNIIEIGNLTLNTDARQVWVR 130

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
           G    LT KE+ ++ELL+  K   L+ E     ++          + V I ++R K+   
Sbjct: 131 GKETRLTPKEFDILELLARNKGMVLSIEKIYEAVWKENFYKSDNNVMVHITRIRDKIEED 190

Query: 205 AGGKNYIETVWGRGY 219
           +    YI+TVWG GY
Sbjct: 191 SKHPIYIKTVWGVGY 205


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 13/231 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           IL+ EDD+    ++   L++ ++ V     G+  ++  +      D ++LD+ +  + GF
Sbjct: 10  ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V + LR A  + P+ + + + S  D+V GL+ GA+DYI KPF+ +EL+ARIR+I+RR+ 
Sbjct: 70  QVCQRLR-ATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAA 128

Query: 120 --RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             + H      +S I  G   ++   +   ++GH + LT  E+++IELL+ R     ++ 
Sbjct: 129 RRQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRG 188

Query: 173 MFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  L  YD     + K +DV I +LR KL+       YI T+ GRGY+ 
Sbjct: 189 DILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239


>gi|113869616|ref|YP_728105.1| response regulator [Ralstonia eutropha H16]
 gi|113528392|emb|CAJ94737.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 15/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  +E  L      + V   G    E     + D +ILDLGL  I G 
Sbjct: 1   MRILLIEDDRQIASGVEAGLSRAGHQMRVVHDGVYATEHLLREQHDLVILDLGLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R    +TPV IL+    +EDK+ GL +GADDY+ KPF   EL AR+R ++RRS+
Sbjct: 61  TLLARYRARNRTTPVIILTARDELEDKLSGLNAGADDYLIKPFALPELEARVRVLLRRSQ 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H ++     +  G L ++ + + + +    + L+ +E+ ++ELL  R+   ++K    +
Sbjct: 121 -HGEAAPERDVRLGRLRLSGNDRRMFIDARPLELSPREFAVLELLLQRQGRVVSKAQLQD 179

Query: 177 HLY-------DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           HL        +G D      I+V++ ++RKKL ++      I TV G GY+L+  A
Sbjct: 180 HLATFAHPAGEGGDTVGDTAIEVYVHRVRKKLEDS---DVEIVTVRGFGYLLQIRA 232


>gi|119775932|ref|YP_928672.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768432|gb|ABM01003.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LK+   +V +   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 8   RVLLVEDDVRLANLIVDYLKANGMHVELERRGDTVLTRLLNYKPDIILLDIMLPGMDGLT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 68  LIEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRHSA 126

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G LS++   +T+ +   ++ LT  E++++ LL+ +    L+++    +L
Sbjct: 127 PPKQESHCLNFGKLSIDPHTQTIRLNDQQVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 186

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 187 LNIDFDGKD----RKIDVRISRLRKKLDDNLETPFRIKTVWGQGYLFAPEA 233


>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ + F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QQHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       S  +  D L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLM 228


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +E  L    + V     G D +   + +  D ++LD+ L D+ GFE
Sbjct: 12  RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR   + TPV  L+  + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+ G
Sbjct: 72  VTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRT-G 130

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           H            ++   DL ++  A  V   G  I L+  E++++  L    N  L+K 
Sbjct: 131 HDVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKS 190

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + +I++ ++  LR+K+ +       I T  G GY LR
Sbjct: 191 QILDRVWGYDFSGDGRIVETYVRYLRRKIDHL--DPPLIHTQRGVGYCLR 238


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 129/225 (57%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V   + GE+G++     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 62  VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           V R  R+ K+ +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR  
Sbjct: 65  VCR--RIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCT 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  
Sbjct: 123 TTTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      + + IDV + +LR+KL+ A+  K  ++TVWG GY
Sbjct: 183 LDEVWGFEYYGDSRTIDVHVKRLREKLAGAS-DKWELKTVWGVGY 226


>gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B]
 gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B]
          Length = 218

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IEDD+A+++ I++ L    +       G +   L K   FD I++D+ L  + GF
Sbjct: 3   INVLIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFNLLKEESFDLILMDIMLPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  ++  ++ PV  L+  + + DKV GL+SGA+DYI KPF   EL+ARI  ++RR  
Sbjct: 63  ELMK--KIKDLNIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I  G+L +  + ++++     I LT KE++++ LL   KN  L++E  L  ++ 
Sbjct: 121 KNSNC-IEFGNLKIYEEERSIKKDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I KLRKKL  A      I+TV+  GY L E
Sbjct: 180 YEYMGETRTIDNHIQKLRKKLDIADN----IKTVYKIGYRLEE 218


>gi|134097593|ref|YP_001103254.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133910216|emb|CAM00329.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 122/217 (56%), Gaps = 3/217 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++D+  +  ++   L +E  +V V   G + + L     FD ++LD+ L  + G+ VL
Sbjct: 1   MVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYRVL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR   ++TPV +LS      D+  GL  GAD Y+ KPF+   LVA++RA++RR     
Sbjct: 61  ERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEAAG 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           +  +  G+L ++  ++ V   G  + L+ +EY ++  L+ R    ++KE  L  ++ G D
Sbjct: 121 RGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVW-GED 179

Query: 184 EPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   + +++V++  LR+KL+ AAG  + ++TV G GY
Sbjct: 180 QFVTRNVVEVYVGYLRRKLA-AAGAGHLVQTVRGHGY 215


>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + F+V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + LR   +   P+ +L+   +++D+++GL +GADDY+ KPF   ELVARI AI+RRS
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  +  +   DLS +LD   V   G  + L     +++ +L  R    + +E     L+
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQALKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G D P+   +   + +LR+ L +       + T+ G GY L E+A
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVL-DKPFPTPLLHTIHGVGYRLAESA 224


>gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   IE+ LK+E F +     G + +E+ +  E   IILD+ + ++ G +
Sbjct: 5   KILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIMMPEMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
               +R  K + P+ +LS  +   DK+ GL +GADDY++KPFN  EL+AR+++ +RR ++
Sbjct: 65  ACMKIREEK-NMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123

Query: 121 GHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  +   TG      DL +N+    V++ G  I LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183

Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  D  D P    + V + K+R+K+        YI+TVWG GY
Sbjct: 184 YQKVWKEDFFDSPNT--VMVHVRKIREKIEKDPRNPQYIKTVWGVGY 228


>gi|91782863|ref|YP_558069.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91686817|gb|ABE30017.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED+      +   L    F V +V D G  G       ++D IILD+ L    G
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFIVDWVAD-GVTGQHRALTEDYDLIILDVMLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + VL+ LR    ST V +L+    ++DKVRGL+ G DDY+ KPF+  EL+AR+R+I+RR 
Sbjct: 60  WTVLKNLRRTH-STSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRG 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +   +L ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++
Sbjct: 119 QPRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRE 223
           D   + +  ++D  I +LR K+ +     NY    I TV G GYVL E
Sbjct: 179 DMNFDSDTNVVDAAIRRLRAKVDD-----NYEPRLIHTVRGMGYVLEE 221


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   +   L+   + V     GE  + L +    D ++LDL L D  G+ +
Sbjct: 4   ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGYSI 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ LR        P+ +L+      D++ GL+ GADDYI KPFN  E+VAR+RA++RR  
Sbjct: 64  VQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRRGA 123

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
           G  Q    +  G +S++LDA    + G  + LT  E+ ++ L         T+    E  
Sbjct: 124 GPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIEQG 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L + Y G +    + +D  I  LRKK+         IETV+G GY LR+
Sbjct: 184 LGYAYAGME----RTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRLRQ 228


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 21  RILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 81  VCRRVQ-ARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 245


>gi|288961137|ref|YP_003451476.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
 gi|288913445|dbj|BAI74932.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L +  + V   + G DGI  C     D +ILDLGL D+ G E
Sbjct: 8   RILVVDDEPQIRKFLRISLSANGYEVVEAENGRDGIGACAERRPDLVILDLGLPDLDGQE 67

Query: 62  VLRAL-RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V+ A+ R A +  P+ +LS  +   DKV  L  GA DY+ KPF   EL+AR+RA++R+  
Sbjct: 68  VISAIHRTAPV--PIIVLSVRAQEYDKVEALDRGAVDYVVKPFGVGELMARVRAVLRQRP 125

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+  + +  G L ++L  + VE  G  +HL+ KEY+++ +L+   +  LT    L  +
Sbjct: 126 ADAEPPTSVTAGTLVIDLARRIVERGGAEVHLSRKEYELLAMLARHADHVLTHADLLREV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V++ +LR+KL +       I T  G GY  R
Sbjct: 186 WGPAHVHDTAYLRVYVKQLRQKLEDDPNLPVLIVTEPGVGYRFR 229


>gi|218508024|ref|ZP_03505902.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli Brasil 5]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELML-KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+K LA ++   L K      +   LG D  EL +   +DAI+LD  L D  G
Sbjct: 1   MRILLIEDEKELAEALTAALGKYGIVTDHTAHLG-DAAELTRQNPYDAILLDRRLPDGEG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              +  LR     TP+ +L+ ++  +++V GL  GADDY+ KPF  EEL+AR+RA++RR 
Sbjct: 60  LRFIPELRRTGKDTPIIVLTALNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y
Sbjct: 120 ANLAELKITAGRMVIDPLHLSVTVDDAPLDLPRRELLVLVALAKRKEKTVLRATLEAAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  +E +   +D  I +LR +L+  AG +  I  + G  Y+LRE+
Sbjct: 180 NYEEEIQSNALDAHISRLRTRLAE-AGAEVSIHNIRGVSYLLRED 223


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 128/226 (56%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +   K     D ++LD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R  ++  P+ +LS  ++  DK++GL +GADDY++KPFN  E++ARI++++RRS
Sbjct: 61  IQVVKEVR-KELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119

Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +A +L     +  G L +  ++  V  + G  I LT  E+ ++ LL+   N   + + 
Sbjct: 120 -NYATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADE 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 179 IFERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|94970126|ref|YP_592174.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552176|gb|ABF42100.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++EDD A+   ++  L    + V V   G    +L      D +I+DLGL DI G 
Sbjct: 11  VRLLVVEDDLAIQEFLKRALVEAGYQVDVAADGRTAEKLATEGIHDGLIIDLGLPDIDGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN-KEELVARIRAIVRRS 119
           +++   R    S PV ILS   S++++VRGL+ G DDY++KPF   E L      + R S
Sbjct: 71  DLIARTRAQGNSAPVLILSARRSVDERVRGLEQGGDDYLTKPFALSELLARLRNLLRRAS 130

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G H  + +   DL ++L  +  +   + + LT +E+ ++E L       +T+ M L+H+
Sbjct: 131 PGQHESTRLRIADLELDLVRREAKRGANVLQLTPQEFALLEYLCRNTGRVVTRTMILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  R +P   ++DV I +LR K+   A  K  I T+ G GYVL+++
Sbjct: 191 WKMRIDPATNVVDVHIYRLRSKVDRDA-PKALIHTIRGVGYVLKDS 235


>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
 gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
          Length = 260

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|167618487|ref|ZP_02387118.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           Bt4]
 gi|257139729|ref|ZP_05587991.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L +++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|83719874|ref|YP_441579.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
 gi|83653699|gb|ABC37762.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 10  VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 70  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 128

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L +++
Sbjct: 129 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 189 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 230


>gi|302335993|ref|YP_003801200.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319833|gb|ADK68320.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL +D++ L+ ++  +L+   + V  +  GED +       +D +ILD+ +  + G  
Sbjct: 5   RLLLADDERELSQALVAILRHAGYEVDASPDGEDALYKLNVNGYDLVILDIMMPKVDGLT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV +L+  + I+D+V GL +GA+DY+ KPF  +EL+ARIR + R S G
Sbjct: 65  VLRTLREEGHEVPVLLLTARAEIDDRVCGLDAGANDYLVKPFAAKELLARIRVLTRTSPG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +SL   GDL+V+ +   +   G  + LT  E +++ LL  R +   T E     ++  
Sbjct: 125 AVRSLPSFGDLAVDEENSRLTCGGDSVSLTATELRIMRLLVERGDGLTTVEQIRRDVWGL 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + E   + V +  LRKKL    G +  I    G GY L
Sbjct: 185 LSDTEQSAVWVNVSNLRKKLRR-VGSRVRIAAARGLGYRL 223


>gi|264676960|ref|YP_003276866.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207472|gb|ACY31570.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+A +I   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 1   MQVLLLEDDPAIARTICYALEREGIAVTHSLLIADARQQWSRTAFDVLLMDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRSR
Sbjct: 61  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSR 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A    +   L ++   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 121 QFQPAAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  I  LR KL      +  I T  G GY L +
Sbjct: 181 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQ 225


>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
 gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 184

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/181 (35%), Positives = 109/181 (60%), Gaps = 6/181 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178

Query: 179 Y 179
           +
Sbjct: 179 W 179


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL+++D+  +   + + LK E F+++    G++ I   +     +D IILD+ + D+ GF
Sbjct: 7   ILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R    + P+ +LS   ++ED+V GL  GADDY++KPF  EEL+AR++A++RR  
Sbjct: 67  EVCKIVREYS-TIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRRVT 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++     L     LS+  + ++V V    + LT KE++++  L+L      T++  L
Sbjct: 126 TIEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRDDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++        + +D  +  +R KL  A    N I TVWG GY
Sbjct: 186 YLIWGEDYVGAQRTVDSHMKNIRSKLYAAGLKNNRIITVWGVGY 229


>gi|271968029|ref|YP_003342225.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270511204|gb|ACZ89482.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 215

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ LA +I   L+ E   V V   G   +E   + ++D I+LD  L  + G EV
Sbjct: 1   MLVVEDERVLADAIATGLRREAMAVDVAYDGAGALERTGYIDYDVIVLDRDLPVVHGDEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L   + ++ + +L+    ++DKV GL  GADDY++KPF   ELVAR+RA+ RRS   
Sbjct: 61  CRRLVAERTASRILMLTASGDVDDKVEGLGLGADDYLAKPFVFIELVARVRALGRRSAPA 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++    + ++   + V   G  I LT KE+ ++E L   +   +++E  L+  +D  
Sbjct: 121 LPPVLERAGVRLDPGKRLVTRDGEEIALTKKEFAVLEELMRAEGAVVSQEDLLDKAWDEN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +P   ++ V +  LRKKL    G    IETV G GY L
Sbjct: 181 IDPFTNVVRVTMMTLRKKL----GEPQVIETVPGVGYKL 215


>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
           27126]
          Length = 237

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 127/226 (56%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           IL+I+DD  L   +   L S  + V V + GE+G+ E      +D I+LD+ +  + GF+
Sbjct: 10  ILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVMMPKMDGFD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LRV+  STPV +L+      D++ GL+ GADDY+ KPFN  ELVARI+AIVRR   
Sbjct: 70  VLKKLRVSH-STPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHNL 128

Query: 119 -SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            S G A  Q L V G + ++  ++  +V    + LT  E+ ++ LL L     +TKE   
Sbjct: 129 SSTGGAVEQDLFVNG-IFLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     +   + ID+ +  LRKK+S  A  +  I+T+ G GY+L
Sbjct: 188 LKILGKPLQAFDRSIDMHVSNLRKKISAVAVDEK-IKTIRGVGYML 232


>gi|3724162|emb|CAA09795.1| PhoP protein [Yersinia enterocolitica]
          Length = 200

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 112/203 (55%), Gaps = 6/203 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL   
Sbjct: 1   MRVLVVEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++ARI+A++R
Sbjct: 58  DGLSLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      ++L  + + V   +I LT  EY +IE L       ++K+  +  
Sbjct: 118 RNIGLASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKK 200
           LY   +  E   IDV + +LRKK
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKK 200


>gi|307942343|ref|ZP_07657694.1| two component transcriptional regulator [Roseibium sp. TrichSKD4]
 gi|307774629|gb|EFO33839.1| two component transcriptional regulator [Roseibium sp. TrichSKD4]
          Length = 220

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LLIED+  LA +I   L  +   V +     D    C   E+D I+LD+ L D  G 
Sbjct: 1   MRFLLIEDNVQLASAIVERLSLDGHVVDLAPCLADARAHCATAEYDLILLDIMLPDGDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R  + +TPV +L+  S + D+V  L  GADDYI KPF+  E  AR RA++RR  
Sbjct: 61  TFLADHRGRENATPVIVLTARSEVSDRVGVLDLGADDYIVKPFDFSEFEARCRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I  GDL  +  A T++V G +I L  +E ++ E+         +K   ++ L+ 
Sbjct: 121 GASGNRISRGDLKFDTLAGTLQVAGEQIQLRNRELRLFEIFINAPGQIFSKSKLVDRLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     I+V++ +LRK LS +A     I TV G GY L
Sbjct: 181 YDEDVSENAIEVYVGRLRKHLSASAAN---IVTVRGLGYKL 218


>gi|307128989|ref|YP_003881005.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
 gi|306526518|gb|ADM96448.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V +   G DG+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVIEDDAGTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHGYDAIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++ GL+ GADDY+ KPF+  ELV R+R ++RR  
Sbjct: 61  QIIEMLR-KKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRMRTLLRRGA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  V  DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYVVADLQLDVLRRKATRQDTAIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV + +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKIDKPFDVK-LIHTVRGIGYV 218


>gi|167761502|ref|ZP_02433629.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704]
 gi|167661168|gb|EDS05298.1| hypothetical protein CLOSCI_03912 [Clostridium scindens ATCC 35704]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +   I  +L++ ++ V   + G     L   Y+ D IILDLGL D+ G E
Sbjct: 7   KILLVEDDGNIRTVIAALLETSDYQVIQAETGAMAETLFSSYQPDLIILDLGLPDMDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  +R   + TPV +LS  ++ +DKVR L  GA+DY++KPF+  EL+AR+R  +R  R 
Sbjct: 67  FISFVRKESL-TPVIVLSARTNDDDKVRALDEGANDYVTKPFSSAELLARVRTTLRNYRH 125

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      G       + ++ DA+ + V G  I L+  EY ++ LLS      +T    +
Sbjct: 126 SSIEGKFPGGKFKLRKMEIDYDARQIFVCGEEIKLSQTEYNIVALLSEHCGKMMTYSSII 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   +E   K + V +  +R+K     G   YI    G GY
Sbjct: 186 KAVWGYSNEGSTKKLQVNMANIRRKFGVKPGESWYITNELGVGY 229


>gi|152994343|ref|YP_001339178.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835267|gb|ABR69243.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 221

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +++H I   L        + D GED ++L K   FD I+LD  +  I G 
Sbjct: 1   MRILVVEDDASVSHWISSKLHVSGHTCKLVDNGEDALKLVKEEVFDVILLDRIIPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L       PV ILS      D++ GL++GADDY+ KPF+  EL+ R+  +  R++
Sbjct: 61  QLLGLLEDLP-HPPVLILSANDQTSDRIEGLRAGADDYLGKPFDFTELLLRLERLYCRTK 119

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A S  I   D+ +NL+   V   G RI LT KE++++ +L+     T+T+ M L   +
Sbjct: 120 KVASSNFIKIKDMMINLELHEVTRSGQRIDLTNKEFKLLYVLAEHPGQTVTRSMLLEKAW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P+  I+DV + KLR KL +       I T+   GY L
Sbjct: 180 GYHFDPQTNILDVHLSKLRHKL-DGDSKNPIIRTIRSVGYAL 220


>gi|120435181|ref|YP_860867.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577331|emb|CAL65800.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K +  ++E  L  +N+ V      +  +     Y++D I+LD+ L D  G 
Sbjct: 1   MKILIIEDEKDMLQNMEDTLLKQNYIVETASDLDSAMSKVGVYDYDCILLDINLPDGSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  L+  K +  V I+S  +S++D+++GL +GADDYI+KPF+  EL AR++A++RR +
Sbjct: 61  EILNFLKENKKTEGVIIVSARNSLDDRIQGLDTGADDYIAKPFHMAELNARVKALLRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                L   G+L ++ +  T   +   + L  KE+ ++  L+  +N  ++K     H++ 
Sbjct: 121 FDGSVLFNIGNLHIDSEKHTSYTEFGEMELNRKEFDILTYLATNQNRLVSKSALAEHVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D+ +  + I   I  LRKKL +    +  I+ ++G GY L
Sbjct: 181 DHIDQADNFEFIYSQIKNLRKKLKDVM-AEVEIKAIYGIGYKL 222


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 129/222 (58%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 73  SKMIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++  
Sbjct: 132 NVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 192 DYFGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 228


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+++LA  +  +L+ E F V V   G   +   +  + D ++LDL L  + G +V
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G 
Sbjct: 64  CKRLRKVS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG-GE 121

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            Q          ++  G + ++++  TV V G  I +  KE+ ++E L       LT+  
Sbjct: 122 PQVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 182 LIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGY 227


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   + + LK + F V+  + G + + + +    DA I+D+ +  + GF
Sbjct: 7   VKVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 67  ELLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGA 126

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +  + I   DL++N D   V   G  + L+  E+ ++  L   K   L+K   L+
Sbjct: 127 NVDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKID--TGDTQLIHTVRGVGYVLR 230


>gi|218551104|ref|YP_002384895.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii
           ATCC 35469]
 gi|218358645|emb|CAQ91295.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia fergusonii ATCC 35469]
 gi|324111467|gb|EGC05448.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325499383|gb|EGC97242.1| DNA-binding transcriptional regulator CpxR [Escherichia fergusonii
           ECD227]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNSSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 232


>gi|325686293|gb|EGD28332.1| phosphate regulon response regulator [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   D G+   +       D +ILDL L D  G E+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV + S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+KL  A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQKLGEAG---KHIETVRGVGYRYHE 223


>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD+ LA      L+S   +V V   GE+ I   +  + D ++LDL L    G  V
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLMLPGADGLTV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A    P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR    
Sbjct: 71  CREVRSA-YKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R ++ + +  G L ++  A+ V + G  + LT  EY ++ LL+    T L++E     
Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    YDG+D    + IDV I ++R K+ +       I+TV  +GY+ 
Sbjct: 190 LRGIQYDGQD----RSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233


>gi|50084599|ref|YP_046109.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
 gi|6127220|gb|AAF04314.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
 gi|49530575|emb|CAG68287.1| putative 2-component regulatory protein [Acinetobacter sp. ADP1]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 17/234 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL IEDD  +  +   +L+ E F V     G + ++      +  ++LDLGL ++ G 
Sbjct: 2   IKILYIEDDVMIGKTTYQLLRHEKFEVDWAKTGLEALDFLFRQTYHLVLLDLGLPELEGL 61

Query: 61  EVLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           +VL+ +R    + KI+  V I+S      DK++GL+ GADDYI KP++ +ELVARI +++
Sbjct: 62  DVLKHIRKKIELNKIA--VIIISARDQSRDKIQGLKLGADDYIVKPYDFDELVARIESVL 119

Query: 117 RRSRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R  RG+  SL       G + +  +   +   G  I+L+ KE+ ++E + +  N   +K+
Sbjct: 120 R--RGNYASLNELNFNVGQVQLFPNTHRILKDGQPINLSTKEWSILEPMMMYPNQIFSKQ 177

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           M    LYD  DE     I+V I  LR+KL     GK++I  V G GY +    K
Sbjct: 178 MLEEKLYDCDDEINSNTIEVHIHNLRQKL-----GKDFIRNVRGLGYCVETQEK 226


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGGND 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL ARIRA++RR   
Sbjct: 63  VCKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S       +  G + +++D   V V G ++ L  KE+ ++E L   +   LT+   ++
Sbjct: 122 AESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV + +LR K+ +       + TV G GY L
Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKL 226


>gi|170782486|ref|YP_001710819.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157055|emb|CAQ02228.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 120/219 (54%), Gaps = 7/219 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+A+  ++   L +E F V     G +  E  K +  D ++LD  L    G +
Sbjct: 20  RVLVVEDDQAIRAAVVSTLTAERFVVRGLASGVELEEEVKGFLPDLVVLDWMLPGPSGIQ 79

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  A R+ + S   V +L+   ++ED++RG   G DDYI KPF   ELVAR+ A++RR R
Sbjct: 80  L--AERIRRWSDAGVIMLTARDAVEDRLRGFGHGVDDYIVKPFALAELVARVGAVLRR-R 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S++  GDL V+ DA      G  + LT  E+Q++  L+  +  TL+K   L  ++ 
Sbjct: 137 GRLASVVEIGDLLVDPDAGLARRGGEPLELTSIEFQLLAYLAAHRGRTLSKTQLLTQVW- 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D  +  +++V I  LRKK+   A G   + TV G GY
Sbjct: 196 GYDHADPNLVEVHISALRKKME--AHGPRLLHTVRGLGY 232


>gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+  +A  IE  LKS  +     +   + +       F+ +ILDLGL    G EV
Sbjct: 4   ILIAEDEPRIASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGLPGRDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           L  LR      PV IL+    I+DK+ GL+ GADDY++KPF  EEL+AR+R  +R  S G
Sbjct: 64  LADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVSIG 123

Query: 122 HAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +     +V LD +T   +V    I L  +E+ + E         L+++  L+ ++
Sbjct: 124 TPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P   I+DV++  LRKKL N+      IETV G GY L+
Sbjct: 184 GYDYDPGSNIVDVYVGYLRKKLGNS-----LIETVRGVGYRLK 221


>gi|77460442|ref|YP_349949.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384445|gb|ABA75958.1| putative two-component response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 240

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD  L   +   L    F V     G +G+ + +   FD +++D+ L  + G  
Sbjct: 10  RILSIEDDPVLGAYVHEHLGRSGFQVTWCQNGSEGLSIARRQPFDVVLMDILLPGLDGLN 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR +  STPV ++S + +  D++ G + GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  VLTQLRQSH-STPVLLMSALGAEADRISGFRLGADDYLPKPFSMAELHVRIEAILRRVAL 128

Query: 119 -SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             R  A + +V  G L  + +   V        LT  EY+++E L+      L+K     
Sbjct: 129 DRRPTAVAAVVPVGGLRFDDEQCEVFYLDQPAGLTRSEYRLLETLNRNDEEVLSKAFLYQ 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           H+         + +D+ I ++R+KL +    +  + TVWG+GYVL  +A DE+ 
Sbjct: 189 HVLQRGYAAHDRSLDMHISQIRRKLKSVGYTEREVRTVWGKGYVL--SAVDESV 240


>gi|49474036|ref|YP_032078.1| two-component response regulator [Bartonella quintana str.
           Toulouse]
 gi|49239540|emb|CAF25897.1| Two-component response regulator [Bartonella quintana str.
           Toulouse]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +E        +V V   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDKNIVLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLK 222


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA-IILDLGLTDIPGF 60
           +IL+++DD A+   +   L  E + +       DG+           ++LDL L ++ G 
Sbjct: 3   KILIVDDDPAIREILRAYLSHEGYEL---SEAADGVSALALAPAADLVVLDLMLPEMDGL 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+     E++VRG + GADDY++KPF+  ELVAR+RA++RRS 
Sbjct: 60  EVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H +  +V GDL +   ++ V + G  + L+  E+ ++  L+       ++E  L  ++ 
Sbjct: 120 IHDR--LVYGDLEIVPGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVW- 176

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G D   V +++DV +  LRK+L +      +IETV G GY  +E 
Sbjct: 177 GSDFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRFKET 221


>gi|308177403|ref|YP_003916809.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307744866|emb|CBT75838.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+A+AH++   ++S          G D   L   +    I+LDLGL D+ G 
Sbjct: 1   MQLLIVEDDQAVAHALIDAVRSAGHQAEHVSRGADA--LLNHHNAQVILLDLGLPDMDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV ILS  +     VRGL+ GADD++ KP     L+AR+ A+ RR++
Sbjct: 59  EVLRKLRQVS-EVPVVILSARNDERSVVRGLRQGADDFLVKPIGLTVLLARLEAVARRAK 117

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +  TG LSV+       + G  + LT KE+ ++ LL+    + +T+E  L+H
Sbjct: 118 VEVAERAGVFNTGGLSVDASKHEASLDGRDLKLTAKEFDLLALLAQYAGSVVTREQILDH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+        + +DV +  LR KL+        I  V G GY L
Sbjct: 178 LWGDAFIAVSRSLDVHLTGLRAKLAT----PGLIVNVRGVGYRL 217


>gi|258654780|ref|YP_003203936.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558005|gb|ACV80947.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++EDD  L   I   L+     V V+  G     +   +  D  +LD+ L    G 
Sbjct: 6   VRILVVEDDDLLRAVIAESLRDAGHLVEVSADGMAAAAVADSFRPDLAVLDVMLPHWSGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ RALR      PV  ++ +  ++D++ G  +GADDY+ KPF   EL+AR+ A++RRS 
Sbjct: 66  ELARALR-GGTDVPVIFVTALDGVDDRLAGFDAGADDYLVKPFAVAELLARVSAVLRRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  LI  GDL V+ DA  V+  G  I LT  E +++  L+  +   L+K   L  ++ 
Sbjct: 125 RLSAQLIEVGDLIVDDDAGVVQRAGQEIDLTATERRLLLYLARHRGRVLSKTQILTQVW- 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G D  +  +++ FI  LR+KL     G   I TV G GY L
Sbjct: 184 GYDAYDPNLVEAFISGLRRKLDQH--GPRLIHTVRGVGYRL 222


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 127/228 (55%), Gaps = 15/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F+V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ R +R  KIS TPV +L+    +ED+++GL  GADDYI KPF+  E+VARI+A++RR+
Sbjct: 61  EICREIR--KISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRT 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
                  A S+     L+++     V  Q   I LT  E++++  L+       ++    
Sbjct: 119 HIETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLV 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   H + G DE   ++ID  I KLR+KL    G    I TV+G GY
Sbjct: 179 QIVQGHDFGG-DE---RVIDAHIKKLRQKLEGVPGDPKIILTVYGVGY 222


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   + L+L+ E F+V     G + ++L +   FD  ILD+ +  + G EV
Sbjct: 5   ILIVDDEEEMLSMLTLILE-EEFSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLDGMEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L  L   +   PV +LS  +   D+V GL+ GADDYI+KPF   ELVAR+++++RR+   
Sbjct: 64  LHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAGSG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +  + G + ++   +T       + LT  E+ ++  L+       ++E  +  ++
Sbjct: 124 PGMGGAEPMPG-IRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERIW 182

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G D P EV+ +D  +  LR+KL  A    + I+TVWG GY  R
Sbjct: 183 -GWDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYKWR 225


>gi|315652037|ref|ZP_07905038.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
 gi|315485684|gb|EFU76065.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
          Length = 220

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ + + +   L+  N+ V     GE+ + L    ++D +ILDL +  + G 
Sbjct: 1   MRILICEDEEDILNGLAKGLRKLNYYVDTAVDGEEALSLYFESKYDLVILDLNMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+A+R     + V ILS   ++ DKV GL  GA+DY+ KPF+ +EL ARIRA+ R S 
Sbjct: 61  EVLKAIREDDADSKVIILSARDTLNDKVLGLDLGANDYLVKPFHFKELEARIRALFRTSY 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 I   + ++ + L+ K VE  G  I LT KEY + E L L K   ++    L H 
Sbjct: 121 NKNDDCIRLDSQNIILCLNKKQVEKDGEVISLTPKEYAIFEYLCLNKGRLVSAGELLEHN 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            D        +I V I  +R+KL     G + I+T  G GY +
Sbjct: 181 IDMNGNDASNVIKVHIAAIRRKL-----GSDAIKTNRGMGYTV 218


>gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 13/231 (5%)

Query: 3   ILLIEDDKALAHSIELM-LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           I ++EDD ++   IEL+ LK+ N++V       D     K      I+LD+ L D  G  
Sbjct: 4   IYVVEDDVSI-QEIELIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNA 62

Query: 62  VLRALRV-AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  A+ S  P+ +L+  ++  D +RGL +GADDYI KPF+  EL++RIRA++RR+
Sbjct: 63  ITRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 122

Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  AQ      S+   G + ++     V V    ++LT KEY ++  L L +    T++M
Sbjct: 123 QTPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRDM 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  ++    E E + +D+ I  LR+KL +AA    Y++TV G GY ++ N
Sbjct: 183 LMQAVWGFDYEGESRTVDMHIKTLRQKLGDAAC---YVQTVRGVGYCVKSN 230


>gi|302524204|ref|ZP_07276546.1| two-component system response regulator [Streptomyces sp. AA4]
 gi|302433099|gb|EFL04915.1| two-component system response regulator [Streptomyces sp. AA4]
          Length = 215

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 13/220 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ LA  +  +L  E +   V   G+ G+ L        +ILD  L  + G  V
Sbjct: 1   MLLVEDDRDLAGMLVELLAGEGYETEVAHDGQRGLHLGLTGRHAVVILDRRLPVVDGLSV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   +   V +LS +  + D+V GL +GADDY+ KPF  +EL+AR+RA+ RR   H
Sbjct: 61  LAQLRRRAVPARVLVLSALGELADRVHGLDTGADDYLVKPFETDELLARVRALCRRDSEH 120

Query: 123 AQSLIVTGDLSVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A+SL +    +  LD +  EV   +G R+ L+G+E++++  L+ R      +      ++
Sbjct: 121 AESLPLG---AAALDLQRHEVVLPRGERVTLSGREFELLRTLAQRPKAIHPRASLRAGVF 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +     I+D ++  LR+KL     G+  ++TV G GY
Sbjct: 178 T--ESAAESIVDTYVYYLRRKL-----GRGVVKTVHGLGY 210


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G   +        D I+LD+ L D  GF +
Sbjct: 13  VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+   
Sbjct: 73  TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132

Query: 123 AQSLIVTGDL---SVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A +  V   L    ++LD  T EV+  G  + L+  E++++          L K   L  
Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + +I+D ++  LR+KL +  G    + TV G GY LR
Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDH-GGAPALLHTVRGVGYCLR 236


>gi|300771171|ref|ZP_07081047.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761841|gb|EFK58661.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  S++  L++E + V V             Y +D I+LD+ L    G 
Sbjct: 1   MKILIVEDELELQRSVQEFLEAEQYVVEVASDYSSASSKINLYTYDCILLDINLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  K      I+S   SI+DK+RGL  GADDY++KPF+  EL ARI+A++RR +
Sbjct: 61  TLLDELR-GKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N D +++ V    +H + KE+ +     L KN  +TK     H++ 
Sbjct: 120 LAGNPVVQLNNLQINYDTRSICVNDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVW- 178

Query: 181 GRDEPEVKIIDVF---ICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D      +D     I  +RKKL         I+ ++G GY
Sbjct: 179 GDDSDMADNLDFIYSQIKNIRKKLKEHHAQLE-IQAIYGIGY 219


>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
 gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
          Length = 242

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R  AQ +   I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ +WG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPEFIQNIWGVGY 238


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +LK E ++V +   G  G E      +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR+ 
Sbjct: 61  EICQELRRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRA- 119

Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G       TG     DL ++ + +    QG  I L+ KE Q+++         LT    L
Sbjct: 120 GSPSHETTTGRLTVADLELDSENQVAYRQGRIIELSQKESQLLQYFMENTGHLLTHAQIL 179

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +L+    ++P   +I   I  LR+K+         I TV+G+GY
Sbjct: 180 QNLWQQDHEQPNSNVIAALIRLLRRKI-EVGKETPLIHTVYGKGY 223


>gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  +EL L+S+ ++++    G++ ++     + D  +LD+ L DI GF
Sbjct: 1   MNILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R  K + PV +L+      DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  EILKRIR-EKYTFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL-TKEM 173
            +         +I  G L +N  +         + LT  E+ ++ LL   +   + ++E+
Sbjct: 120 QYNDVGKNEGDIIDFGALFLNRTSHECVYYDKELTLTPIEFDILWLLCENRGRVISSEEL 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           F     +   +     + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FRTVWKEQYYKNSNNTVMVHIRHLREKMSEPTGKSDFIKTVWGVGYKVEE 229


>gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L ++         G +G+E      FD ++LD+GL  I GFE
Sbjct: 3   RILIVEDEDRIAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGLPTIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV +L+   S+ D V  L+ GADDY++KPF   EL ARI   +R+   
Sbjct: 63  VLDQLRAQGSRMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLRQQDN 122

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  + +G ++++L  + + V G    L+ +E+ + E+L       L++   L+  +
Sbjct: 123 TDAEVGELRSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLAW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +P   ++DV++  LRKKL +A      +ETV G GY
Sbjct: 183 GMDFDPGSNVVDVYVGYLRKKLGSA-----RVETVRGMGY 217


>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 246

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 127/236 (53%), Gaps = 10/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +RILL++D+  L   +++ L+ E ++V V   G  G+   +     D I+LD  L D  G
Sbjct: 9   IRILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFSG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V  L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 69  IDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G     +  G+LS+N   + V      I L+ KEY+++  L   +   LT+
Sbjct: 129 ITFSAINGDGPQPETLKVGNLSMNTSTRDVSRGDRLIQLSVKEYELLNFLMRGQGKVLTR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +  ++      +  ++DV+I  LR+KL  +      I TV G G++LRE  +D
Sbjct: 189 ADIMRGVWGENFYGDDNLLDVYIRYLRQKL-ESKDLPTLIHTVRGVGFILREEIQD 243


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +++L+++D+  +   +   L  + F V     GE+ I++  F+E      I+LD+ +  +
Sbjct: 4   LKVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDI--FFEQKDIALILLDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+ +L+     +D+++G   G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWEVCRTIRKYS-QVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   +Q +I  G + ++  A  V V G  + L+ KE+++I   +  +   L++E  LN+
Sbjct: 121 RSSTMSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     + + ID  + KLR KL +     +YI+T+WG GY
Sbjct: 181 VWNYDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGY 219


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +   IE+ L++ENF V+     +D + L K   FD  I+D+ L D  GFE
Sbjct: 4   KILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPDGNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+  +   D+V GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  LCKLIR-EKYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQH 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +       +++L+V G L +N  +    + G  I LT  E+ ++ LL   +    + +  
Sbjct: 123 YDGKENNTSETLMVMG-LFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADEL 181

Query: 175 LNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++  +     +  + V I  +R+KL +      +++TVWG GY++
Sbjct: 182 FQQIWGEKYFKNSRNTVMVQIRHIREKLYDTGNKPKFVKTVWGVGYII 229


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 122/222 (54%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   ++  L  + F+V     GE+ ++L  F+E      IILD+ +  +
Sbjct: 12  LKILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDL--FFEQKDIALIILDVMMPKM 69

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E  R +R      P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+R
Sbjct: 70  DGWETCRTIRKYS-QVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILR 128

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   +  LI  G + ++  A  V + G  I L+ KE++++      +   L++E  LN+
Sbjct: 129 RSNAVSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNN 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     + + ID  + KLR K+       +YI T+WG GY
Sbjct: 189 VWNYDYFGDARTIDTHVKKLRSKMGEKG---DYIRTIWGMGY 227


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 11/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  ++  +   L+ E + V +   G  G+   +    D ++LDL L  +PG EV
Sbjct: 8   ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLPKLPGIEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            RALR+     PV +L+ +    D++ GL  GADDY+SKPF+  ELV R+ A++RR+ R 
Sbjct: 68  CRALRIES-EVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVRT 126

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A       +  G+L ++  ++   ++G +++LT +E+ ++E L        ++   L  
Sbjct: 127 EAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLER 186

Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D    D+     + V + +LR+K+ +A      + TVWG GY
Sbjct: 187 VWDWTFGDQ---STVTVHVRRLREKIEDAPAQPKRLVTVWGVGY 227


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E     +FD + LD+ +  + GF+
Sbjct: 22  RILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDGFD 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R AK   P+ I++     +D V+G + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 82  ACERIR-AKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDM 140

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  L+  GDL ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 141 QKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFRE 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E  ++DV + +LR+K+         I TV G GY L
Sbjct: 201 VWGYEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKL 244


>gi|77460250|ref|YP_349757.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384253|gb|ABA75766.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 241

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           LR  R    + PV +LS  +S   KV+ L  GA+DY++KPF  +E +AR+RA++R++  G
Sbjct: 67  LREFR-EWATAPVLVLSVRASEGQKVQALDGGANDYVTKPFGIQEFLARVRALLRQAPAG 125

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            AQ   +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EAQQAALNFGPLTVDLAYRRVLLDGVEVGLTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                +   + + +  LR+KL++      +I T  G GY L +N    T E
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRLLDNQVPSTIE 236


>gi|269795816|ref|YP_003315271.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098001|gb|ACZ22437.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 214

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 4/218 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED++ +A ++   L+ E+  V V   G   IE  +  ++D ++LD  +  + G +V R
Sbjct: 1   MVEDEQLIAEAVATGLRRESIAVDVVGDGRTAIEKIEVNDYDVVVLDRDIPGMHGDDVCR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +  +  ST V +L+  S + D+V GL+ GADDY++KPF   ELVAR+RA+ RR+R  A 
Sbjct: 61  WVSASGSSTRVLMLTASSELRDRVEGLELGADDYLAKPFAFTELVARVRALGRRARPAAP 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
            ++    L ++   + V   G +I L+ KE+ ++E L       ++ E  L  ++D   +
Sbjct: 121 PVLERSGLRLDPARREVVRDGQQIVLSKKEFGVLEELMRADGAVVSAETLLEKVWDENID 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           P   ++   I ++R+KL    G    +ETV G GY +R
Sbjct: 181 PFTGVVRFVIKQVRRKL----GEPGLVETVIGSGYRVR 214


>gi|254786893|ref|YP_003074322.1| response regulator receiver domain-containing protein
           [Teredinibacter turnerae T7901]
 gi|237684839|gb|ACR12103.1| response regulator receiver domain protein [Teredinibacter turnerae
           T7901]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED++ LA S+   L+ ++F+    + G+  +ELC+   +DA+ILD+ +  I G 
Sbjct: 1   MIVLLVEDNRDLAASVLDYLELQDFDCDYAERGDHALELCRDNTYDAMILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + PV +L+   +++DK+ G  +GADDY+ KPF+  EL AR+RAI +R  
Sbjct: 61  SLCKTLREHGNNAPVIMLTARDTLDDKLAGFDAGADDYLVKPFDLPELAARLRAITKRKV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL V  DL VNLD   V  QG  I L+   ++++  L       L++    N L+ 
Sbjct: 121 SSGSSLKV-ADLEVNLDNHQVTRQGKLIDLSPACWKLLVALIQASPRVLSRFELENVLWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               P+ + +   +  LR KL +       I T+ G G  LR+N
Sbjct: 180 DS-PPDSEALKSHLYTLR-KLVDKPFENPLIHTLRGVGVALRDN 221


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I L LK E + V     G + I +    +   ++LD+ +  + G EV
Sbjct: 6   ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTMDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K + PV  LS  S+  DKV GL +GADDYI+KPF+  ELVAR++A +RR    
Sbjct: 66  CRRIR-EKFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTYF 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  H   + + G L ++  ++TV + G  I+LT  EY ++ L++  +N   T E  
Sbjct: 125 NQVPSEVHENKIQIRG-LEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  R       + V I +LR K+         I+ VWG GY
Sbjct: 184 YESVWRERAHESNNTVMVHIARLRNKIEENPKESTIIQNVWGVGY 228


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  ++  ++L L+ E + +     G +G++     ++D I+LD+ L  + G E
Sbjct: 8   RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGME 67

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R+ +IS  P+ +L+      D V GL +GADDYI+KPF  EEL+ARIR  ++R +
Sbjct: 68  VCR--RIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKK 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H+ ++ + G L ++LD   V      I LT  E+ +++     KN  L ++  LN 
Sbjct: 126 LEIEHSNTISIKG-LELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  ++DV++  LR K+ N    + +I T+ G GY+L++
Sbjct: 185 VWGFDYLGDTNVVDVYVRYLRTKIDNKYNER-FIYTIRGVGYLLKD 229


>gi|171059251|ref|YP_001791600.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776696|gb|ACB34835.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 222

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+ A+  S++   +     V     G   ++  +  + D ++LDL L  + G 
Sbjct: 1   MKLLLIEDNLAMQTSLQRAFERRGMQVVTCADGARALDRWQASQPDVVLLDLSLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   + TPV IL+   ++ D+V GL +GADDY++KPF+ +EL AR++A+VRR  
Sbjct: 61  EVLTRARAEGLRTPVIILTARGAVGDRVLGLNTGADDYLAKPFDLDELEARVKALVRRQP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                      L V+  +  V  QG  + L  +E  ++  L  R    + KE     ++ 
Sbjct: 121 SERHDTPEYCGLRVDAQSGAVYFQGQALELAPRESALLRALLARPGQAVAKERLFELVFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  + +   I+V   +LRK+L+        + T+ G GY+L
Sbjct: 181 GEADVQPDAIEVVAYRLRKRLATTGA---RLVTLRGLGYLL 218


>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 234

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L  +I+  L  +    Y+ D   DG +   + E     +  +ILD  L 
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLNQQK---YLVDWVMDGNDAWTYLENSSAQYTVVILDWMLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            I G E+ + LR      P+ +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+
Sbjct: 58  GISGLELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +  G+ +++    TV  Q        I LT KE+Q++E      +  +T
Sbjct: 118 QRRSPHLQPQQLTVGNFTLDYGNSTVVRQNTTGEQQSIPLTNKEFQLLEYFMNHPHQIVT 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   N +++   E    ++   I  LR+KL+ +    N IET+ G GY L+
Sbjct: 178 TEQIRNQIWEVNAESSSNVVAAQIRLLRRKLT-SNDCPNPIETLHGMGYRLK 228


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   + + LK + F V   + G + +++ + +  DA ILD+ +  + GF
Sbjct: 9   IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + +PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 69  ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL++N +   V   G  I L+  E+ ++  L L     L+K   L++
Sbjct: 129 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 189 VWHYDFGGDGNVVESYISYLRRKVDTQ--DPQLIQTVRGVGYVLR 231


>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + LK + FNV   + G + + + +    +A ILD+ +  + GFE+
Sbjct: 11  VLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVMMPGMDGFEL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR    
Sbjct: 71  LAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGAG 130

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ + +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L+++
Sbjct: 131 QDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDNV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 191 WHYDFGGDGNVVESYISYLRRKID--TGDSPLIHTVRGVGYVLR 232


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +A  + L L+ E + +     G+  +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  + E     ++  I +LR K+       + I TVWG+GY
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGY 227


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E   +DV I +LR K+ +    K  I TV G GY L+  A
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPFENK-LIMTVRGMGYRLQAEA 222


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  + ++  PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      +I+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSN 230


>gi|24379372|ref|NP_721327.1| putative response regulator [Streptococcus mutans UA159]
 gi|290580626|ref|YP_003485018.1| putative response regulator [Streptococcus mutans NN2025]
 gi|24377300|gb|AAN58633.1|AE014933_7 putative response regulator [Streptococcus mutans UA159]
 gi|254997525|dbj|BAH88126.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 114/205 (55%), Gaps = 3/205 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL ED++ L+      LK + + V     G+D IE      +D  ILD+ +    G 
Sbjct: 3   LTILLAEDEEQLSRVYTAALKHQGYQVDQVYNGQDAIEKAHENAYDVFILDIMMPIKTGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR +R +   T   +L+ MS IEDKV GL++GADDY++KP + +EL+AR+ ++ RR  
Sbjct: 63  EALREIRASGDHTHAIMLTAMSEIEDKVTGLEAGADDYLTKPISLKELLARLASLERRLD 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++L A+   V G+ I L GKE +++    L  N +L+ +    H++ 
Sbjct: 123 RFTDKVLTFGSVKLDL-AQQEMVSGNSIRLAGKESKLMAFFMLNPNKSLSTKEIFQHVWA 181

Query: 181 GRDEPEVK--IIDVFICKLRKKLSN 203
             D+PE+    + ++I  LR+KL +
Sbjct: 182 KDDDPEIDEGYVFIYISYLRQKLKS 206


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ ED+ AL+  ++  L+ E + V V   G++ + +    + D ++ D  +  + G EV
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R LR A+  T   P+ +L+  S   D++RGL +GADDY+ KPF+  ELVARIRA++RR 
Sbjct: 67  TRRLR-AQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRI 125

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R G ++  +  G++ ++  +  V+  G  +HL   EY++++ L        ++E  L+ +
Sbjct: 126 RPGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLDAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L NA    + I TV   GY L
Sbjct: 186 WGNDVYVEARTVDVHIGRLRKAL-NADTDYDPIRTVRSAGYSL 227


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R      PV IL+     ED+VRGL+ GADDY+ KPF++ EL++RIRA++RR    
Sbjct: 69  LRRIRSFS-QVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127

Query: 123 ---AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D LS++   + V V G R++L   EY+++  L       LT EM L+ +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + ++I  LR+K+        YI T  G GY
Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGY 228


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I  G+L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|323499146|ref|ZP_08104124.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315779|gb|EGA68812.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 243

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D   L K    D ++LD GL D  G + 
Sbjct: 12  ILLVEDDDDLADLVQMHLKFQGHQVARVTSIADAKALHKDQNLDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +   PV +L+   S  DKV GL++G DDYI+KPF+  E  AR+R I+RR    
Sbjct: 72  CHYLRQQQEWLPVLMLTARDSEMDKVDGLEAGVDDYITKPFSVLEFQARVRNILRRFNHK 131

Query: 123 AQSLIVTGDLSVNL---------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+S++    ++ N+         D   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AESVVEPEHVNANMRFGSLIIAPDLHQVCLNNKEVSLTATEFSLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H++          +   + +LR KL  +    ++I+TVWG GY
Sbjct: 192 LLDHVWHTNHSGYHHTVCSTVNRLRSKLCLSDSDHHFIQTVWGVGY 237


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F   +   GE+G        +D IILDL L    G E
Sbjct: 3   RILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLPGADGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R++R A++  P+ I+S      DK+RG   GADD+++KPF+  EL+AR +A + R   
Sbjct: 63  VCRSIR-AQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +R      I   +L+++  A+ V V G+ + LT +E+ ++  ++   N   +K     
Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+      ++  + V I ++R+K+        +IETVWG GY
Sbjct: 182 RLWGFDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGY 224


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +LK E F V++   G   ++     + D I+LDL L  + G EV
Sbjct: 4   VLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +++   S  DKV GL+ GADDY++KP+   EL+ARIRA++RR  G 
Sbjct: 64  CRQLRQTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRG-GE 121

Query: 123 AQ-------SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +        L++  D + ++++   V V G ++ +  KE+ ++E L       LT+   
Sbjct: 122 VEVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV I +LR K+         + TV G GY
Sbjct: 182 IDRVWGADYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGY 226


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|326772524|ref|ZP_08231808.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinomyces viscosus C505]
 gi|326637156|gb|EGE38058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Actinomyces viscosus C505]
          Length = 242

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D+  +  S+   L+   + V +   G + +++   Y+ D I+ D+ +  + G E+
Sbjct: 13  VLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEAMDILASYQVDIIVSDVLMPRMDGREL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R     TP+ +L+ + +  ++V  L  GADDY+SKPF+  EL +RIRA++RR+RG 
Sbjct: 73  VRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           AQ L     +  G+L +   ++ V + G  + LT K   +++ L        T++  L  
Sbjct: 133 AQPLTSASRLTAGELLLERTSRRVTLSGREVTLTPKATMLLDYLMSHPGELHTRDALLAS 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+        + +D  I ++R+ L + A    YIETV   GY  R   +
Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDAANPTYIETVPSVGYRFRAEVR 241


>gi|241205230|ref|YP_002976326.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859120|gb|ACS56787.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA ++   L         T    D +EL +   +DAI+LD  L D  G 
Sbjct: 1   MRILLIEDERELAEALSAALGKHGIVTDHTMHLADAVELTRQNLYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR     TP+ +L+ ++  ++++ GL  GADDY+ KPF  EEL+AR+RA++RRS 
Sbjct: 61  SFIPDLRRTGKDTPIIVLTALNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVLRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G + ++    +V V    + L  +E  ++  L+ R   T+ +      +Y+
Sbjct: 121 ELAELKITAGRMVIDPLHLSVTVDAVPLDLPRRELLVLAALARRNEKTVLRSTLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   +D  I +LRK+L +A  G   I  + G GY+++E
Sbjct: 181 YEEEIQSNALDAHISRLRKRLIDAGAGV-AIHNIRGVGYLMKE 222


>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD A+   +   L+   +  Y    G + +   +  + + IILDL L  + G +V
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGEQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  ++  K + PV  LS     + K+  L++GADDY++KPF+ EEL+ARI  I+RR   +
Sbjct: 65  LAEIKKTK-NVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYEN 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  + SL+  GDL+++       ++  ++ LT  E+ ++++L        TK+M    L+
Sbjct: 124 QYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQLW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   E     I+V I  LRKK++     K+YI+TVWG G+
Sbjct: 184 NEALEGSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGF 223


>gi|291549941|emb|CBL26203.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     +  D ++LDLGL DI G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKTHEYRYLTAPDGQSAILETSSHNPDIVLLDLGLPDIDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLSMM 124

Query: 119 -SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                A++++ V G L V+  A    +    +HLT  EY+++ LL+      LT      
Sbjct: 125 QKVSPAEAVVFVNGKLRVDYAAGCAYLNEEELHLTPIEYKLLCLLTRNIGKVLTHTFLTQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 SIWGSSWNNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227


>gi|196228340|ref|ZP_03127207.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227743|gb|EDY22246.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 241

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 5/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+ D      I   L    + V   D G DG+E+ +      II ++GL  + G E+
Sbjct: 22  VLVIDSDPQCVEQITASLAEAGYEVVTADNGPDGLEMARHLRPALIITEVGLDGLSGLEL 81

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   A     V +L+   S  D++ G + G DDY++KPF+  ELV R++A+ RR+ 
Sbjct: 82  CRVLRGDAATEGIHVIMLTERQSELDRILGFEFGTDDYVAKPFSVRELVLRVKAVQRRAG 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++++  G ++V+       V G  I LT  E++++  L+ R N   T++  L  ++ 
Sbjct: 142 GSKRNVVKAGPIAVDHSRCCALVNGAAIDLTPTEFKLLATLAERPNVVQTRDKLLTEVWG 201

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  E + +D ++ +LR KL  A     +I+TV+G GY
Sbjct: 202 NENAIENRSVDTYLRRLRNKLGEAG---QHIKTVYGFGY 237


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG  I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 SSDAPVLRVANLELDLVQRKARRQGSTILLTSKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  ++D  I ++R K+      K  I TV G GYVL +  + E CE
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQDYEPK-LIHTVRGMGYVLEQ--RGEPCE 227


>gi|78061300|ref|YP_371208.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969185|gb|ABB10564.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++++D+ + H + + LK+E  +V     G  G+        D I+ D  L DI G E+
Sbjct: 8   IVIVDEDRFIRHFVRVALKAERMHVCEAATGAAGVAAVGARRPDLIVADTNLHDIGGTEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +RALR    + P+ +LS +S+  DKV  L +GADDY++KPF   EL+ARIRA +RR  G 
Sbjct: 68  IRALRACS-AAPLIVLSALSAESDKVAALDAGADDYLTKPFGAAELIARIRAHLRRQAGG 126

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +  GD++V+L  + V   G R+HL+  E++++  L+      LT +  L+ ++
Sbjct: 127 GRIDAVRVCFGDVTVDLADRQVLRGGARVHLSPIEFRLLAALAHHAGRLLTHDRLLSEVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   + V++  LR+KL        YI T  G GY L
Sbjct: 187 GATHGKDAHYLRVYVGHLRRKLERDPRRPAYILTETGVGYRL 228


>gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 233

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L++ED+  LA  +   L+ + F V +   G + +   +  + D ++LDLGL  + G E
Sbjct: 5   RALVVEDEPELARLVGSYLERDGFAVTIVHDGLEAVARSREVDPDVVVLDLGLPGLDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR       V +L+  S   D + GL  GADDY++KPF+  ELVAR++A++RR R 
Sbjct: 65  VCRRLRTFSDGY-VVMLTARSDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRP 123

Query: 121 -GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            GH    A   +  GDL++ L  + V ++   + LT  E+ ++  L+ R     ++   +
Sbjct: 124 LGHMDADAGEALSFGDLTIELAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLI 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      +  ++DV +  LR KL ++A    Y+ TV G GY +   A
Sbjct: 184 DAVWGPAWVGDEHLVDVHVGHLRHKLGDSAAEGRYVRTVRGIGYRMGRGA 233


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF V
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+   
Sbjct: 77  ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAI 136

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H++
Sbjct: 137 ENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-----IETVWGRGYVLRE 223
           +     +  I++ +I  LR+K+    G         I+T  G GY+LRE
Sbjct: 197 EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLRE 245


>gi|322391334|ref|ZP_08064804.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris
           ATCC 700780]
 gi|321145760|gb|EFX41151.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris
           ATCC 700780]
          Length = 228

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 130/220 (59%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   I+ +L+ E + V + +  E+ ++LC F  FD I+LD+ +  + G E
Sbjct: 4   KILVVDDDLAILRLIKKVLEYEKYEVVIRNNIEE-VDLCDFTGFDLILLDI-MMPVNGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +I+ P+C ++     ED V G+ +GADDYI KPF+ +EL+AR++  +RR   
Sbjct: 62  ICQMIR-EQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREER 120

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +++  I +G L +  D+K + +   +I LT +E+ ++ LL+   +   + E   N+LY
Sbjct: 121 TKETVHQIKSGKLILYTDSKELFINDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E  ++ +  +I K+R+KL       N I+T++G GY
Sbjct: 181 PQSSEALLRSVSEYIYKIRQKLK--PYQLNPIKTLYGGGY 218


>gi|319763684|ref|YP_004127621.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330824053|ref|YP_004387356.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118245|gb|ADV00734.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329309425|gb|AEB83840.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   I++ L+S+ +   + + G  G+ L      D ++LDLGL D  G E
Sbjct: 11  RVLVIDDEPQIRKFIDISLRSQGYATLLAETGLQGLALLASQGADIVVLDLGLPDRDGKE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV +L+  S  E+KV  L +GA+DY++KPF   EL+ARIRA +R +  
Sbjct: 71  VLEELRQWS-RVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGIGELMARIRAFLRTTAL 129

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    +   G L ++L  + V ++G  + LT KE+ ++ LL+ +    +T+   L  ++
Sbjct: 130 SGEEGPVYDDGTLCIDLARRKVHLRGQAVALTRKEFALLALLARQPGRLVTQTQLLREMW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
               + +   + V + KLR KL + A    YI T  G G
Sbjct: 190 GPTHQEDAHYLRVLVGKLRHKLGDDASAPRYIVTEPGVG 228


>gi|268611925|ref|ZP_06145652.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Ruminococcus flavefaciens FD-1]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I   LK  ++       G + I L   ++ D IILDLGL DI G EV
Sbjct: 6   VLVVEDDKPIRNLITTTLKMNDYRYITAVKGNEAIMLSASHKPDIIILDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +  +R      P+ I+S  S   DK+  L  GADDY++KPF+ +EL+AR+R I RR   S
Sbjct: 66  IEHIRTWS-DVPIIIVSARSEDRDKITALDKGADDYLTKPFSVDELLARLRVIQRRLMKS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + +  V G L ++  +  V +    +HLT  EY+++ LL+      LT +  +  ++
Sbjct: 125 ENISVTEFVNGRLRIDYVSGCVHLDDEELHLTPIEYKLLCLLAKNVGKVLTHKYIIQSVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +     + VF+  LRKKLS+++  +  I+T  G GY
Sbjct: 185 GTPADNSEASLRVFMATLRKKLSDSS--QALIQTHIGIGY 222


>gi|296130171|ref|YP_003637421.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296021986|gb|ADG75222.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 227

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 125/218 (57%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L+SE F+    + G++ + + +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMIGIVLRSEGFDPVFCEDGDEALGVFRATQPDLVLLDLMLPGKDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+ +L+  S   D V GL+SGADDYISKPF  +ELVAR+RA +RRS  
Sbjct: 64  VCRQIR-GESGVPIVMLTAKSDTIDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL++++    VE  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEHLTIGDLTIDVPGHRVERAGRTISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIETDPARPEIVVTVRGVGY 220


>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 250

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D++ +   + L LK ENF    T L G + + L K + FD I+LD+ L DI GFE
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPDIDGFE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +RR   
Sbjct: 77  LCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQQM 135

Query: 120 --RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             R H +  S +     S+      + V G  +H T KE +++  L    N   T E   
Sbjct: 136 LIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQLY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 196 EQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + V+ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  116 bits (290), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   +NV   + GE+ +E       D ++LD+ L  + GF V
Sbjct: 12  ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFAV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A+   P+  LS + SI ++V GL  GADDY+ KPF+ +EL ARI  I+RR   G
Sbjct: 72  CRRLR-AESCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGSG 130

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 131 SATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVPR 190

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 191 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGY 240


>gi|313123613|ref|YP_004033872.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280176|gb|ADQ60895.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 225

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   D G+   +       D +ILDL L D  G E+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV + S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 RKKEDKIDKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+KL  A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQKLGEAG---KHIETVRGVGYRYHE 223


>gi|313105813|ref|ZP_07792076.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|310878578|gb|EFQ37172.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 253

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 24  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 84  ILRQLRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 142

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 143 ERGGAPGRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 202

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 203 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 249


>gi|167760489|ref|ZP_02432616.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704]
 gi|167661855|gb|EDS05985.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           ++LL+EDD +L   +   LK   F++ V    E+  + L +  ++D +ILD+ L D  GF
Sbjct: 3   KLLLLEDDISLIDGLSYSLKKNGFDIDVVRTVEEAKQHLTQIEKYDLLILDVTLPDGTGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R      P+  L+      + +RGL  G DDY++KPF   EL +RIRA++RR+ 
Sbjct: 63  EICERVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRALLRRAG 122

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             AQ   +++  GD+ ++L    V + G  + LT  EY+++ LL    N  +++E+ LN 
Sbjct: 123 ISAQDKTNILECGDILIDLLGSRVLLNGKVLDLTSAEYRLLCLLVRNANRIVSREIILND 182

Query: 178 LY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ D  +  +   + V+I +LR+K+   A    ++ TV G GY  +E
Sbjct: 183 LWDDAGNFVDDNTLSVYIRRLREKVEADASHPQHLITVRGFGYQWKE 229


>gi|54022631|ref|YP_116873.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014139|dbj|BAD55509.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 238

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/213 (32%), Positives = 113/213 (53%), Gaps = 6/213 (2%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           S+E  L+   F+V V   G   +        DA++LD+ +  + G  V+ ALR      P
Sbjct: 24  SVERGLRLSGFHVLVARDGAAALRSVNADCPDAVVLDMNMPVLDGAGVVTALRALGNDVP 83

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-----SRGHAQSLIVT 129
           +C+LS  +S++D++ GL+SGADDY+ KPF   ELVARI+A++RR     +       I  
Sbjct: 84  ICVLSARASVDDRISGLESGADDYLVKPFVLAELVARIKALLRRRTDAPAAAATPGAITV 143

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G L V+       + G  I LT +E++++  L+      L++E  L  ++      +  +
Sbjct: 144 GPLEVDEAGYRALLHGREIELTKREFELLSTLARNAGVVLSRERLLELVWGYDFAADTNV 203

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +DVF+  LR+KL  A G    + T+ G G+VLR
Sbjct: 204 VDVFVGYLRRKL-EADGTPRLLHTIRGVGFVLR 235


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+++DD+A+  S+    +S  ++ Y  D   DG+E          DA+I+D+ +  +
Sbjct: 3   MHILVVDDDRAVRESLA---RSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E  R LR      P+ +L+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ R
Sbjct: 60  DGLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTR 119

Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RSR       A   +   DL+++  ++ V     RI LT  E+ ++ +        L + 
Sbjct: 120 RSRPEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERS 179

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE
Sbjct: 180 WLLHEVW-GFDFPTTANSLEVYIGYLRRK-TEHDGEPRLIHTVRGVGYVLRE 229


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G++ +E     ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  ++     I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGY 231


>gi|166032195|ref|ZP_02235024.1| hypothetical protein DORFOR_01898 [Dorea formicigenerans ATCC
           27755]
 gi|226325708|ref|ZP_03801226.1| hypothetical protein COPCOM_03521 [Coprococcus comes ATCC 27758]
 gi|166027918|gb|EDR46675.1| hypothetical protein DORFOR_01898 [Dorea formicigenerans ATCC
           27755]
 gi|225205832|gb|EEG88186.1| hypothetical protein COPCOM_03521 [Coprococcus comes ATCC 27758]
          Length = 227

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++   + + ++V + + G D +E     + D I+LD+ +  I G E
Sbjct: 7   RILIVDDDIELLKMLKNYFEIKRYDVMMAEDGTDALEKI-HKKPDIILLDINMPKIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K++ P+  L+     +D+V GL SG DDYI KPF+ +EL ARI A ++R   
Sbjct: 66  VCRRIR-GKVTCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELDARIIAHLKREER 124

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H         GDLS++  AK V++  + + LT  EY +IE LS+       +E     + 
Sbjct: 125 HKGKSEYRFHGDLSIDYGAKRVQIGENDLELTKLEYAIIEFLSMNPGQVFDRERIYEKVC 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + +++   I ++RKKL+     + YIETVWG GY
Sbjct: 185 GYDAEGDSRVVTELIRRVRKKLAEYTQTE-YIETVWGMGY 223


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 6   ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  SKMIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++  
Sbjct: 125 NVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 221


>gi|26250678|ref|NP_756718.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           CFT073]
 gi|110644249|ref|YP_671979.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 536]
 gi|191172709|ref|ZP_03034247.1| transcriptional regulatory protein CpxR [Escherichia coli F11]
 gi|215489244|ref|YP_002331675.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218692197|ref|YP_002400409.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ED1a]
 gi|227885347|ref|ZP_04003152.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972]
 gi|300975749|ref|ZP_07173165.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300986009|ref|ZP_07177684.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301048722|ref|ZP_07195731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306813823|ref|ZP_07447999.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101]
 gi|312969335|ref|ZP_07783537.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75]
 gi|331649764|ref|ZP_08350844.1| transcriptional regulatory protein CpxR [Escherichia coli M605]
 gi|26111109|gb|AAN83292.1|AE016770_92 Transcriptional Regulatory protein cpxR [Escherichia coli CFT073]
 gi|110345841|gb|ABG72078.1| transcriptional regulatory protein CpxR [Escherichia coli 536]
 gi|190907013|gb|EDV66614.1| transcriptional regulatory protein CpxR [Escherichia coli F11]
 gi|215267316|emb|CAS11765.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218429761|emb|CAR10585.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli ED1a]
 gi|222035625|emb|CAP78370.1| Transcriptional regulatory protein cpxR [Escherichia coli LF82]
 gi|227837723|gb|EEJ48189.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 83972]
 gi|300299468|gb|EFJ55853.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300306467|gb|EFJ60987.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300410237|gb|EFJ93775.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305852821|gb|EFM53268.1| DNA-binding transcriptional regulator CpxR [Escherichia coli NC101]
 gi|307556055|gb|ADN48830.1| transcriptional regulatory protein CpxR [Escherichia coli ABU
           83972]
 gi|312285882|gb|EFR13800.1| transcriptional regulatory protein cpxR [Escherichia coli 2362-75]
 gi|312948488|gb|ADR29315.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315292748|gb|EFU52100.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|324006816|gb|EGB76035.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324012550|gb|EGB81769.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|331041397|gb|EGI13547.1| transcriptional regulatory protein CpxR [Escherichia coli M605]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|238796000|ref|ZP_04639512.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
 gi|238720205|gb|EEQ12009.1| Two-component response regulator of virulence determinant [Yersinia
           mollaretii ATCC 43969]
          Length = 218

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIPGFEV 62
           +ED+  L H + + ++     V   D  ED  E   F   +  D  I+DLGL    G  +
Sbjct: 1   MEDNALLRHHLTVQMREMGHQV---DAAEDAKEADYFLQEHAPDIAIIDLGLPGEDGLSL 57

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R  R  + + P+ +L+   S +DKV  L++GADDY++KPF+ EE++AR++A++RR+ G 
Sbjct: 58  IRRWRSHQANLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGL 117

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A  +I      ++L  + + V   +I LT  EY +IE L       ++KE  +  LY   
Sbjct: 118 ASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGKVVSKETLMLQLYPDA 177

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  E   IDV + +LRKKL     G+  I T+ G+GY    N
Sbjct: 178 ELRESHTIDVLMGRLRKKLLAEHEGE-VITTIRGQGYRFDAN 218


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E ++  V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA    PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VADRPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   +TV + G  +HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D  D    + +D  +  LR KL     G + I TV G GY     +  E
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GPDMIRTVHGVGYAFEPPSDGE 242


>gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989]
 gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli 55989]
 gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431]
          Length = 223

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 TLNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIP 58
           R+L++EDD ++  +++  L++E F+V     G + +    +      D I+LDL L  + 
Sbjct: 17  RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V R LR   I+TP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 77  GLDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRR 136

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++   Q      +++   +L +  +   V   G  + L+ KEY+++EL         +++
Sbjct: 137 TQQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRD 196

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  ++      + K +DV I  LR+K+ +      +I TV G GY
Sbjct: 197 QLLEKVWGIDFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGY 243


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+   ++L L+ +   V+  + GE GIE+   +  D ++LDL L  + GFE 
Sbjct: 4   VLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMDGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R A    P+ +L+  +   D V GL++GADDY++KP     L ARIRA++RR+   
Sbjct: 64  CRRMRAAG-PVPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A +    GDL ++  A  V  +G  + LT  E +++  LS       +++  L+ 
Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++D     + +++D  + +LR K+ +      +++TV G GY
Sbjct: 183 VWDHDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGY 224


>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +      +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
 gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
           [Dechloromonas aromatica RCB]
          Length = 226

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ A++ ++   L+S+ F      LG   + L      D ++LD+GL D+ GF
Sbjct: 1   MKILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V RALR      PV  L+  S   D++ GL+ G DDY++KPF+  E+V+RIRAI+RR  
Sbjct: 61  DVCRALRRYS-DVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLN 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R  A         +V+ D   +   GH ++LT  EY ++ LL  R    L++   + 
Sbjct: 120 PEPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIME 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E   + +D  I  LR KL      ++ I T  G GY
Sbjct: 180 SVWQDGGESLERTVDTHIKTLRGKLRGLRPDEDVIVTHRGLGY 222


>gi|260768061|ref|ZP_05876995.1| two component transcriptional regulator winged helix family protein
           [Vibrio furnissii CIP 102972]
 gi|260616091|gb|EEX41276.1| two component transcriptional regulator winged helix family protein
           [Vibrio furnissii CIP 102972]
          Length = 229

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ LL+EDD  LA ++   +  E  +      G+ G  L     +D I+LDL L  I G 
Sbjct: 2   LKALLVEDDLDLATALVDYMSLEAIDCDFAADGQVGYNLIMANRYDVIVLDLNLPKIEGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R   I TPV +L+   +++DK++G   GADDY+ KPF  EEL+AR++ + +R  
Sbjct: 62  VVCERIRERGIETPVLMLTARDTLDDKLQGFSHGADDYLVKPFAMEELMARVQVLAKRRS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L V  DL +++  + V   G  I L+    +++ELL     + +++E  + +++ 
Sbjct: 122 GQVSKLRV-ADLVLDIAQRKVTRAGQEIKLSPIAIKILELLMREYPSGVSREKIVLNVW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G D+P+   + V +  LRK++ + AG +  I T+ G G+ ++    DET 
Sbjct: 180 GDDQPDSNSLKVHMFNLRKQI-DKAGLEPLIHTLPGYGFAIQRQGNDETA 228


>gi|188578223|ref|YP_001915152.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188522675|gb|ACD60620.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 203

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 96/179 (53%), Gaps = 5/179 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
            D +ILDLGL  + G EV+R  R   + TP+ +LS      D+  G   GADDY+ KPF+
Sbjct: 16  MDLVILDLGLPRMDGIEVIRTARARAVDTPILVLSARERAADRALGPDVGADDYLGKPFD 75

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
             EL+AR RA++RRS G  Q  +  G L ++    +V   G  + LT +E+ ++ LL  +
Sbjct: 76  TNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQ 135

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   + +E    HLY   ++     +DV + +LR+KLS A      I  + G GY L E
Sbjct: 136 RGRPIGRERIQQHLYGWDEDVASNAVDVHVHQLRRKLSAA-----VIRIIRGIGYALDE 189


>gi|49475273|ref|YP_033314.1| two-component response regulator [Bartonella henselae str.
           Houston-1]
 gi|49238079|emb|CAF27286.1| Two-component response regulator [Bartonella henselae str.
           Houston-1]
          Length = 228

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +E   +    +V V   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGRYLEKAFEEAGHSVDVAYDGETGYALAETENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNETPALILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      K++    + T+ G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLYTIRGAGYMLK 222


>gi|86146719|ref|ZP_01065040.1| putative two-component response regulator [Vibrio sp. MED222]
 gi|85835566|gb|EAQ53703.1| putative two-component response regulator [Vibrio sp. MED222]
          Length = 243

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+EDD  LA  +++ LK +  +V   +  E    L    +FD ++LD GL D  G 
Sbjct: 10  VNILLVEDDDDLAELVQMHLKFQGHHVERANTIEKAQGLYLDGQFDLVVLDRGLPDGDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +  R LR  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR  
Sbjct: 70  DFCRMLRQQEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLS 129

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K
Sbjct: 130 HVESATQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSK 189

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  L H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 190 DELLEHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 124/236 (52%), Gaps = 15/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           +R+L+++D++ +   I L L+ E F V   + GE GI        D IILD+ +   I G
Sbjct: 17  LRVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDG 76

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            EV R LR    +   P+ +L+    + D++ GL++GADDY++KPF+ +EL+ RIRAI+R
Sbjct: 77  LEVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILR 136

Query: 118 RSRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
           R +G  +S           ++   DL +N   + V   G  I LT  EY ++ L      
Sbjct: 137 R-QGRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPR 195

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L ++  L  ++      E  II+V++  LR+K+ ++      I+TV   GYVL+
Sbjct: 196 QVLDRQTILQRVWGYEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVLK 251


>gi|284044693|ref|YP_003395033.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948914|gb|ADB51658.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 229

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  ++  L+ E ++V     G   ++    +  D +ILDLGL  + G +
Sbjct: 9   RVLVVEDDDEIAQVLQRSLRMEGYDVRTAGDGVSALDEAHSFLPDLVILDLGLPKLDGID 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   ++E +V GL +GADDY+ KPF ++EL+AR+RA++RR   
Sbjct: 69  VARTLRRGD-DVPILMLTARDALESRVEGLDAGADDYLVKPFERQELLARLRALLRRRPP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V GDL +N D   V      I LT +E++++E L   +   ++++  L+ ++  
Sbjct: 128 RGSAPLVVGDLRLNPDTHEVHRGERSIELTQREFELLEYLMRNERIVISRQRLLDEVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   I+VF+  LR+KL  A G    + T+ G GYVLR
Sbjct: 188 DPFSTTNTIEVFVSNLRRKL-EADGEPRLLHTIRGAGYVLR 227


>gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635]
 gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635]
          Length = 224

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 120/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + Y    GE  ++L +    D +++D+ +  + GF++ 
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIVVVDIMMDGMDGFQLC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 65  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 124 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWGYDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 184 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
 gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
          Length = 238

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE + V+ +D  + G+      + D IILDLGL D  G   
Sbjct: 17  ILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           ++ LR    + P+ +LS  +S EDKV  L +GADDY+SKPF   EL+AR+R  +RR S G
Sbjct: 77  IQDLRQWS-AIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 135

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A+S +V   D+SV+L  + V   G  +HLT  E++++  L       +T+   L  ++ 
Sbjct: 136 SAESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLTQVWG 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 196 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGY 234


>gi|229106169|ref|ZP_04236718.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677245|gb|EEL31573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 233

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++E+D  +   I L +K   FNV  TD GE  +EL +    D +ILD+ L  I GF V
Sbjct: 6   ILVLENDITIRSFITLNMKRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 66  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 125

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 126 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 186 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 229


>gi|255654686|ref|ZP_05400095.1| two component transcriptional regulator [Clostridium difficile
           QCD-23m63]
          Length = 228

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           M+ILL+EDD  L  +I++ L+ EN+ V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 1   MKILLLEDDLELCKNIKISLEKENYMVDCCNDGETAMLYALNTDYAYDLAIVDRMLPIID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++++R   IS P+ I++ MS+++++V GL  GADDY+ KPF+ +EL+AR+RA+ RR
Sbjct: 61  GLTIIKSMRRKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +  GDL+ + D++T+    + + LT KE ++  +      T  ++E  +  
Sbjct: 121 PANIQLSSKLEYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++    E E   +D +I  LRK+L         I TV+G GY L +    ETC
Sbjct: 181 IWGSSSEVETGNVDSYISFLRKRLKELKSSCK-ITTVYGAGYKLEK----ETC 228


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +    +  G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 119 ---SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S G+    IVT  D+++N+    V++    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I KLR+K+        YI+TVWG GY
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGY 228


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   I   L+  N+ V   D G D +E+ +    D +I+DL L  + G E 
Sbjct: 5   ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R      P+ +L+  +S  DK+ GL+ GADDYI+KPF+ +EL++RI+ I+RR+   
Sbjct: 65  TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   +++++     V+    +I LT  E++++  L    N  L+++  L  
Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + +I+D+ I  LR KL N       I+T+ G GY
Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGY 226


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+      K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDEPFPEK-LIATIRGMGY 253


>gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 225

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 118/224 (52%), Gaps = 17/224 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA----IILDLGLTD-I 57
           +L++EDD A+A  + +    E   V V   GED +       FDA    +ILDL L   +
Sbjct: 5   VLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALS-----AFDASVTLVILDLNLPGRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV RA+R  + + P+ +LS   +  D+V GL+ GADDY++KPF+  EL+AR+RAI R
Sbjct: 60  DGLEVARAIR-HRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIER 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R   +  S        V+ D +  +V   G  + LT +E+ ++        T LT+   L
Sbjct: 119 RVEANPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + +DV + +LRKKL    GG   I TVWG GY
Sbjct: 179 DGVWGPEWYGDDRTVDVHVLQLRKKL----GGAIAISTVWGVGY 218


>gi|118588829|ref|ZP_01546237.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Stappia aggregata IAM 12614]
 gi|118438815|gb|EAV45448.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Stappia aggregata IAM 12614]
          Length = 218

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  L  +I   +  +   V +V  L E  + L     ++ I+LDL L D  G
Sbjct: 1   MRVLLIEDDAILGEAIHDHVVMQGHGVDWVKRLDEAALALDAV-PYELILLDLNLPDGLG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L+ LR      PV I++    +  ++ GL SGADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LNFLKTLRRGGNQVPVIIVTAQDQVAMRIEGLDSGADDYLVKPFDLAELRARLSAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G        GD++++L  K+ E  G  + LT +E+ ++E L   +   ++K      LY
Sbjct: 120 AGAPNPETTLGDITLDLTRKSAERAGKPVDLTSREWAVLERLLRHRGGIVSKSDIEESLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E   ++V++ +LRKK+     G + + TV G GY
Sbjct: 180 AFGAEVESNTVEVYVSRLRKKI-----GADAVTTVRGLGY 214


>gi|33152529|ref|NP_873882.1| transcriptional regulatory protein CpxR [Haemophilus ducreyi
           35000HP]
 gi|33148752|gb|AAP96271.1| transcriptional regulatory protein CpxR [Haemophilus ducreyi
           35000HP]
          Length = 240

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 16/235 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F+++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLVDDDLELTELLAELLSLEGFHIHCVHNGQDALTELELQSYDLILLDVMMPILNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K + PV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKYAIPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTVA 121

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHR---------IHLTGKEYQMIELLSLRKN 166
              S +VT       D +  L    VE+   R         + LTG E+ ++++L     
Sbjct: 122 PNLSDVVTPSNHSPEDSNKQLSFGGVELHPGRQQAIFEDQDLDLTGTEFALLQMLMHNPG 181

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 QILSRELLSLEVLGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 236


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + IE  +    D IILDL L  + G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 228

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L+  I  ML    ++       E    L     +  I+LD+ L D  GFE
Sbjct: 5   RILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINLPDGTGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    PV   S  ++ +D++     G DDY+ KP++ +EL++R+ A++RR+ G
Sbjct: 65  ICRQLREAS-HVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAYG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD+ +N  ++TV   G  + L  +E+ ++  L   KNT + K+  ++ ++ 
Sbjct: 124 GEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E   + V I  LR+KL +      YI+TVW  GY+L +
Sbjct: 184 AFSEVEPSTLTVHIRWLREKLEDDPAAPVYIKTVWRLGYMLED 226


>gi|52140505|ref|YP_086323.1| response regulator [Bacillus cereus E33L]
 gi|51973974|gb|AAU15524.1| response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  L  E + V     GE+ ++       D IILD+ L D+ GF+
Sbjct: 4   KILVVDDEPDILTFIEDSLVMEGYEVRSALNGEEALKQLD-SSVDLIILDVMLPDMNGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+  LS   S   ++ GL  G DDYISKPF+ +EL ARI A +RR+  
Sbjct: 63  VCEKMR-ESYPCPILFLSADGSERSRIEGLLIGGDDYISKPFSLKELKARIIANLRRTTE 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++L+  GDL ++L +  + +   +IH T KEY+++++L+L     LTKE     
Sbjct: 122 LQMMGQKNLLRYGDLVIDLQSYEILLGKEKIHFTKKEYEVVKMLALHAGQVLTKEQLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +V  +   I K+R KLS       YI+TVWG GY
Sbjct: 182 IWGYDSESDVSTVVEHIKKIRTKLSVYDREYTYIQTVWGIGY 223


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  115 bits (289), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 18  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 78  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 197 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 243


>gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  ++  +   L+   + V+    G   ++  +  + D I+LD+ L    G 
Sbjct: 1   MKILLVEDDLEISKLLAEFLQENGYEVFCQYDGLHVLDCLRENKIDLILLDIMLPYRNGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A+R    + P+ ++S   + ++KV  L+ GADDYI+KPF+ EE++ARI + +RR +
Sbjct: 61  TVLTAVRECS-TVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQ 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  GDL ++L+  T  +QG  + LT KE+ ++ELL    +   +K      +
Sbjct: 120 FQKDNPTHLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++     E   ++V I  LR KL      K++I+TVWG GY L + A+D
Sbjct: 180 WNAEYISEDNTLNVHISNLRNKLKAVCPDKDFIDTVWGIGYRLHK-ARD 227


>gi|262195106|ref|YP_003266315.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262078453|gb|ACY14422.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 234

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A +I   LK   F V +   G  G+E  +   FD ++LDL L    G  
Sbjct: 8   RILVVEDDAPTASAIVRALKGAGFEVELAVDGILGLEAIRRARFDLVVLDLRLPRAHGLA 67

Query: 62  VLRALRVAK------ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           +L ALR A+        + V ++S  + +  ++R  + GADD++ KPF  EEL+ARIR  
Sbjct: 68  LLEALRGAEGRARHNRDSCVLVISASTELASRLRSFELGADDFVPKPFWTEELLARIRRR 127

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + R    A++  + G L+V+  A+ V V G  + LTG E+ ++ +L   +   +++    
Sbjct: 128 LGRPDAVARNSEI-GILTVDPRARQVRVAGREVALTGAEFDLLCVLVRARGGAVSRAQLA 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     +   + +D  + +LR+KL +A G   Y+ TVWG GY L E
Sbjct: 187 EEVLAADADGRGRTVDSHVARLRRKLGDAGG---YVRTVWGIGYRLSE 231


>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++  AQ +   I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
 gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    G++ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRAR-EKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 123 AQSLIVTGDL----SVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  T ++    S+ +D K   V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  R       + V + +LR K+     G   I TVWG GY
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGY 226


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L++E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 7   IRVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+  + +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A VR   
Sbjct: 67  EVCRMLKKME-NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G   ++   K ++ +G  + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 126 PNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E  I++V++  LR+KL +       I T+ G GY
Sbjct: 186 YDFAGEENIVEVYVRSLREKLKDK--DHQIIRTLRGAGY 222


>gi|29829025|ref|NP_823659.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606131|dbj|BAC70194.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFAVTHARNGEEALQALVPESSGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +        A++ +  G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 120 NAHEEGGAAAETALRLGSVHIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 223


>gi|90423350|ref|YP_531720.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105364|gb|ABD87401.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+L+IEDD+    S + ++K+     +V D    GE+G+ L    ++D +++D  L   
Sbjct: 16  MRLLIIEDDR---ESADYLVKAFREVGHVADHAADGEEGLALADSGDYDVLVIDRMLPKR 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + R
Sbjct: 73  DGLSVIGTLRDNGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSR 132

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A ++    GDL ++  +  V      + L  +E++++E L       +T+ M L 
Sbjct: 133 RHGGPAEETSYKVGDLELDRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++D   +P+  +IDV I +LR K+      +  + T+ G GY++R+  
Sbjct: 193 NVWDYHFDPQTNVIDVHISRLRSKIDKGF-ERPLLHTIRGAGYMIRDGG 240


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 TLNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 246

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+V +   G D +   +  + D +ILDL L  I G E
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 73  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRT 131

Query: 122 HAQSLIVT-----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            A  +              G L++++  + V +    + LT  E+ ++  LS R     +
Sbjct: 132 VATPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFS 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  ++         ++DV I  LR+KL++      Y+ TV G GY
Sbjct: 192 RRQLLEAVWGDSWGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGY 240


>gi|332877104|ref|ZP_08444855.1| putative response regulator ArlR [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332684994|gb|EGJ57840.1| putative response regulator ArlR [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ L+ SI   L  E +         D       YE+D I+LDL L    G 
Sbjct: 1   MKILIIEDERKLSDSIVAYLSGEKYLCEQAFTYTDARMKVNLYEYDCILLDLMLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R  +    V I+S   S++DKV+GL+ GADDY++KPF+  EL  RI AI+RR  
Sbjct: 61  DLLHEIRKQRNPVGVIIVSAKDSLDDKVKGLEIGADDYLAKPFHLPELSMRIYAIIRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
             A +++ +  + +NL  K+  V    + LT  EY+++  L   KN  ++K     HL  
Sbjct: 121 FSANNILESNGVCINLLNKSAAVGDTPVELTKSEYELLLFLIGNKNRVISKSAMAEHLSG 180

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D  D  +   +   I  L+ KL+ +AG K+ I+ V+G GY   E
Sbjct: 181 DMADMMDNHD--FVYTHIKNLKAKLA-SAGCKDCIKNVYGTGYKWAE 224


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+K +   I   LK   ++V   D GE  +  C+  + D  +LD+ L  I G EV
Sbjct: 6   IYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGIDGLEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++ +      P+ +L+  +   DKV GL+ GA+DYI+KPF+  EL+ARI+ I RR  
Sbjct: 66  CRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFRRQA 125

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++    I  G +++++    V  +   I +T KE+++++LL L K   L++E+ L  
Sbjct: 126 DSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      E + +DV I  LR+K+ +      YIETV G GY
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGY 227


>gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4]
 gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4]
          Length = 229

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD      +   L  E F+V  TD G  G+        D I+LD+ +  + G +
Sbjct: 3   RVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMNGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R +    P+ +L+     +D++ GL  GADDY+SKP +  ELVAR+RAI+RR+  
Sbjct: 63  VLQNIRKSS-EIPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRRTGK 121

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H    + +G+L +   ++   + G  + LTG EY ++ELL       ++K      
Sbjct: 122 TPPEHPSQPLKSGELVLYPTSRQAHINGEALALTGTEYNLLELLVRNGGKVVSKHDISQS 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     P  + IDV +  +R+KL      +++I++V G+GY+L +++
Sbjct: 182 VFGRPLTPFDRRIDVHLSSIRQKLGLRKDRQSWIQSVRGQGYILLQDS 229


>gi|160894924|ref|ZP_02075698.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
 gi|156863355|gb|EDO56786.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50]
          Length = 226

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 16/224 (7%)

Query: 3   ILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL+ED+  +A  I + M +SE    +  D G++ + L   +E+D  +LD+ L    GFE
Sbjct: 9   ILLVEDEAGIAEGIMDYMKESEITFTWAAD-GDEALALVYEHEYDLALLDVMLPGADGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R AK   P+  L+     ED++ G   G DDY+ KPF+  EL A+I++ +RRS+G
Sbjct: 68  ICRAIR-AKSYVPIIFLTARGREEDRLYGYDLGCDDYVVKPFSMAELQAKIQSFLRRSKG 126

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
                 +I  GD+ +  D   VE  G  + L  KEY M++ L   K   +T++  L  L 
Sbjct: 127 LWTKNQVIQVGDIKMYPDRLLVEAAGEEVRLAPKEYAMLKYLMEHKGMIVTRDDMLVRLW 186

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              YDG D    +++D  + KLRK L ++      I+TV+ +GY
Sbjct: 187 GYDYDGGD----RVVDNHVKKLRKALGDSG---KLIKTVFAKGY 223


>gi|116048852|ref|YP_792347.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296390718|ref|ZP_06880193.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|115584073|gb|ABJ10088.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 239

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQLRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 129 ERGGAPGRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 235


>gi|315498131|ref|YP_004086935.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416143|gb|ADU12784.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 234

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +   + + L S ++ V   + G +GI L    + DA++LDLGL DI G E
Sbjct: 7   KVLVIEDDPQIRKFLTITLTSHDYTVIPAETGREGIRLATSVKPDAVLLDLGLPDIDGTE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+ ++R +    P+ ++S     E+KV+    GA+D+++KPF   EL+AR+RA +R S  
Sbjct: 67  VIGSIR-SWSKMPILVVSVRDQEEEKVKAFDLGANDFVTKPFGTAELMARLRASLRDSIV 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  GDL ++L A  V V+   I L+ KE+ ++++L+      LT +  +  ++
Sbjct: 126 ASVEDTRVEVGDLCIDLAAHKVSVRDTPIKLSPKEFALLKVLATHAGKLLTHKYLMQKVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 + + + ++I +LR+KL       ++I    G GY L   A+
Sbjct: 186 GEAQADDNQYLRIYIAQLRQKLEIDPARDHFIVNEPGIGYRLETPAR 232


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 75  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +A     I TVWG GY
Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGY 240


>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
 gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++     + D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GADMIRTVHGVGYAF 235


>gi|146306762|ref|YP_001187227.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145574963|gb|ABP84495.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL +EDD  LA  ++  L +  F+V ++  G +G+ L +  +FD I++D+ L    G +
Sbjct: 10  RILAVEDDPLLASHLQSHLVARGFDVTLSHDGSEGLRLAEREDFDLILMDILLPGTNGLD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L+ LR  + S PV ++S +   ++++ G   GADDY+ KPF+  EL  R+ AI+RR   
Sbjct: 70  ALQQLRRRR-SVPVLLMSALGDEQNRIAGFSQGADDYLPKPFSLGELSVRVEAILRRVAY 128

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   Q  +    L  +     V   G  + LT  EY+++ELL   ++  L+K       
Sbjct: 129 ERREPQPGVGDDALQFDDGRSDVAYAGQWLGLTPSEYRVLELLWRHQDEALSKPFLYQQA 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    + +D+ +  +R+KL         ++TVWG+GY+L +
Sbjct: 189 LRRAYAQHDRSLDMHVSHIRRKLQAVGYEAMRVDTVWGKGYILAQ 233


>gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567]
 gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +DD ALA  I ++L  E +N    + G    E    +  D ++LDL L    G EV   +
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLMLPGKSGIEVCEQI 71

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIRA + R R   Q +
Sbjct: 72  RSSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARL-RPRESRQLV 129

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  GD  +++D +T++ +G  + +T  E+ ++  L  R    ++++  L  ++ G  +  
Sbjct: 130 VRVGDTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVW-GYSDVS 188

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++V + +LR K ++  G +  I+TV G GY
Sbjct: 189 DSLVNVHVQRLRAKFTD-IGAEQVIQTVRGVGY 220


>gi|291535233|emb|CBL08345.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI--ELCKFYEFDAIILDLGLTDIP 58
           M+ILL+EDD  L  +I++ L+ EN+ V   + GE  +   L   Y +D  I+D  L  I 
Sbjct: 1   MKILLLEDDLELCKNIKISLEKENYMVDCCNDGETAMLYALNTDYAYDLAIVDRMLPIID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +++++R   IS P+ I++ MS+++++V GL  GADDY+ KPF+ +EL+AR+RA+ RR
Sbjct: 61  GLTIIKSMRRKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +  GDL+ + D++T+    + I LT KE ++  +      T  ++E  +  
Sbjct: 121 PANIQLSSKLQYGDLTFDKDSRTLSTPVNSILLTSKETELTFVFMQNPETLFSREQLILK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++    E E   +D +I  LRK+L         I TV+G GY L +    ETC
Sbjct: 181 IWGSSSEVETGNVDSYISFLRKRLKELKSSCK-ITTVYGAGYKLEK----ETC 228


>gi|163858931|ref|YP_001633229.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262659|emb|CAP44962.1| two-component response regulator [Bordetella petrii]
          Length = 186

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 110/182 (60%), Gaps = 6/182 (3%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           ++D IILD+ L D+ GFEVL+ +R +  + PV +L+  +S+ED+VRGL+ GADDY++KPF
Sbjct: 2   QYDLIILDINLPDMEGFEVLQRIRQSD-AVPVMMLTARTSLEDRVRGLEQGADDYLAKPF 60

Query: 104 NKEELVARIRAIVRRSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159
              EL AR++A+ RR  G+      +++   DL ++L  + V     RI LT KE+ ++ 
Sbjct: 61  ALSELQARVQALRRRGSGNESRRGPNVLRVADLELDLLRRRVVRGNARIDLTAKEFNLLT 120

Query: 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +L  R+   +++ +   H++D        +++V + +LR K+ +    K  + T+ G GY
Sbjct: 121 ILMRRQGEVVSRLVLAEHVWDMNFNSNTNVVEVAVRRLRSKIDDPFDAK-LLHTIRGMGY 179

Query: 220 VL 221
           ++
Sbjct: 180 LI 181


>gi|163748748|ref|ZP_02156000.1| transcriptional regulatory protein CpxR [Shewanella benthica KT99]
 gi|161331522|gb|EDQ02327.1| transcriptional regulatory protein CpxR [Shewanella benthica KT99]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 113/200 (56%), Gaps = 5/200 (2%)

Query: 25  FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           F + +   G+ G+EL    ++D I+LD+ L  + GFEVL++LR  K  TPV +L+     
Sbjct: 26  FELTLAHDGQSGLELALDKDYDLILLDVMLPKLNGFEVLKSLRANK-QTPVLMLTARGDE 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR----GHAQSLIVTGDLSVNLDAKT 140
            D+V GL+ GADDY+ KPFN  ELVARI+AI+RRS         S+   GD++++   + 
Sbjct: 85  IDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRSHILPNDKQPSVYEYGDITLDPSRQE 144

Query: 141 VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200
           V  Q   + LTG E+ ++  +       ++KE     + + +  P  + +D+ +  LRKK
Sbjct: 145 VYCQEQLLILTGTEFGLLFEMIQNAGDLISKESLSEKVLNKKLMPFDRSLDMHLSNLRKK 204

Query: 201 LSNAAGGKNYIETVWGRGYV 220
           L     G+  ++T+ G+GY+
Sbjct: 205 LPERMDGRPRVKTIRGKGYI 224


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  +   P+ +L+G  + E +++G + G DDYI+KPF+    + R+ A++RR   
Sbjct: 63  ICKIMR-GQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 217


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 117/224 (52%), Gaps = 10/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++  L   ++ V     GED +E       + ++LD+ +  + G E
Sbjct: 5   KILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGMGGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             RA+R +    PV ILS  ++ +DKV  L +GADDY++KPF  EEL+ARIRA +RRS  
Sbjct: 65  TCRAIR-SGTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRRSPS 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G       + +L ++ DA+ V   G  + LT KE++M+  L       +T    L  
Sbjct: 124 GPDGGPHGFTAS-NLEIDFDARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQA 182

Query: 178 LY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  D  DEPE   + VFI +LRKK+        +I T    GY
Sbjct: 183 VWGPDYGDEPEY--LRVFINQLRKKIEANPSKPKFILTEPWVGY 224


>gi|226951618|ref|ZP_03822082.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
 gi|226837648|gb|EEH70031.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 130/227 (57%), Gaps = 14/227 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F+V   + G DG+ L     FD ++LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQFHQFDVEWVNNGVDGLALLGKQAFDLVLLDLGLPLMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R  + + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RR   
Sbjct: 63  ILKQIR-QRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGNT 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++G+ Q L+ +GDL ++++      +G +I L+ +E+ ++  +    N   +K   
Sbjct: 122 VMNQNKGNTQ-LLKSGDLILDVEQHLATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + LYD   E     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 181 EDKLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D+  +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  + G 
Sbjct: 5   FKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R +  + P+ +L+     E+K+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIRESS-NVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V  +G  + +T  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  LA  +   L+   F  +V+  GED +       FD ++LD+ L  I GFEV
Sbjct: 6   LLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  ++    P+ +L+      D++ G + G DDY+ KPF+  EL+ RIRAI +R R
Sbjct: 66  CRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKRDR 125

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            H   +   +  G L V+L    V ++G  + LT  E++++  L  RK    ++E  L+ 
Sbjct: 126 RHGGRVPEQLRAGTLDVDLVRHLVTLEGRELLLTLMEFKLLAALLKRKGEAQSREKLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D       + ID  I +LR+KL         I+TV G GY   + A
Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGETG---RMIKTVRGFGYKFEDEA 230


>gi|78066488|ref|YP_369257.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967233|gb|ABB08613.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MRILL+EDD  +  ++   LK  +   Y TD   DG+     +    +D ++LDLGL   
Sbjct: 1   MRILLVEDDPMIGEAVHAALKDAS---YATDWVTDGVRALTAFAAQPYDLVLLDLGLPGR 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VL A+R    S P+ I++    ++D++ GL  GADDYI KPF   EL+ARIR  +R
Sbjct: 58  DGLDVLAAIRAKDASAPLLIVTARDGLDDRLAGLDGGADDYIVKPFEMAELLARIRVAIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  G A  L+  G +S++   +   V GH  + L+ +E+ ++  L +R    L++    +
Sbjct: 118 RRAGSAAPLLSNGIVSLDPATREASVDGHAPVPLSNREFALLRALLVRPGAILSRRELED 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LY   +E E   ++  I  LR+KL     G   I+ V G G+++
Sbjct: 178 RLYGWGEEVESNAVEFLIHSLRRKL-----GSTVIKNVRGAGWMV 217


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  I+   + E + V     G++ I L K   +D I+LD+ +  + GFE
Sbjct: 4   KILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            LR +R      PV +L+      DKV GL+ GADDY+ KPF+  EL+AR++A++RR   
Sbjct: 64  ALREIRKTS-DVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    S++   DL ++L+   V      I LT +E+++++ L+       ++E  L  
Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +++ +DV + +LR+K+ +   G  YI+T  G GY  
Sbjct: 183 VWEYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGYFF 226


>gi|239501472|ref|ZP_04660782.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           baumannii AB900]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V V+   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDVTQRLVWVEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|238855525|ref|ZP_04645829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|260665399|ref|ZP_05866246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934342|ref|ZP_06339611.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|313471862|ref|ZP_07812354.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|238831858|gb|EEQ24191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|239529223|gb|EEQ68224.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|260560667|gb|EEX26644.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301592|gb|EFA93867.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 20/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYE----FDAIILDLGLT 55
           + IL++EDD ++A  +EL  K E +NV   D+  DG+E   KF E    +D I LDL L 
Sbjct: 3   LNILMVEDDSSVAEMMELFFKKEQWNV---DIARDGVEAVDKFKERPDYYDMITLDLNLP 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V + +R    S P+ +L+   S  D+V GL+ GAD+Y++KPF+   L+ARI+A+
Sbjct: 60  KKDGIQVAKEVRAISESIPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKAL 119

Query: 116 VRRS---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
            RR+         +      IVT  L ++   + V     +I  LT KE+ ++  ++ + 
Sbjct: 120 HRRAALENTDNDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++  L  ++      E + +D  I KLR+KL     G   I+TVWG GY
Sbjct: 180 KQVFSRDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEV--GPQIIQTVWGVGY 231


>gi|85814041|emb|CAF31457.2| putative two-component system response regulator [Micromonospora
           echinospora]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 114/227 (50%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  +   +   L+     V       DG+        D ++LDLGL D+ G E
Sbjct: 3   RLLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALDNRPDLVVLDLGLPDLDGRE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR A    PV + +      + VR L +GADDY+ KPF   +L AR+RA++RR+  
Sbjct: 63  LLRMLR-AVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRAAS 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +V G L V+  ++ V + G  + LT +E+ ++  L+ R    +TK   L  +
Sbjct: 122 VAGADDSALVVGGLRVDPRSRQVTLDGAPVELTPREFDLLHHLAARPGEVVTKRELLTDV 181

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               Y G D    K +DV +  LR+KL   A    Y+ TV G G  L
Sbjct: 182 WQIPYGGAD----KTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 121/231 (52%), Gaps = 13/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL I+D++ +   I+  L+ E + V     G + +   K    D +ILDL L  + G 
Sbjct: 1   MKILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R A    P+ +L+   S +DKV G   GADDY++KPF+  EL  R++AI+RR++
Sbjct: 61  EICRKIR-ALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTK 119

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----E 172
                    +   GDL ++  +  V+ +G  ++LT  EY+++ ++    N   T+    E
Sbjct: 120 NDLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + +DG D    + ID  I  LR+K+ +      YI+TV+G GY   E
Sbjct: 180 KAFGYDFDGFD----RTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGE 226


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAF 235


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|332670978|ref|YP_004453986.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340016|gb|AEE46599.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/218 (35%), Positives = 124/218 (56%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L+SE F     + G++ +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMIGIVLRSEGFEPVFCEDGDEALATFRATQPDLVLLDLMLPGRDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDYISKPF  +ELVAR+RA +RRS  
Sbjct: 64  VCRQIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GD+S+++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEHLSIGDVSIDVPGHRVARAGRPISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+ N       + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIENDPEQPEIVVTVRGVGY 220


>gi|255527737|ref|ZP_05394592.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187215|ref|ZP_06855612.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296187220|ref|ZP_06855617.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508577|gb|EET84962.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048250|gb|EFG87687.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296048255|gb|EFG87692.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ +   I  +L +++  VY    G   +E+   Y FD ++LD+ + DI G+
Sbjct: 4   IRILIVEDEEPIRKLIYKILSTQDMLVYQAQNGSQALEMINKYSFDLVLLDILMDDISGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R   +  P+  LSG    ED ++GL  GAD YI+KPF+   L A++++ ++R +
Sbjct: 64  DVAREIRKHNLQLPIIFLSGKKDDEDIIKGLDIGADSYITKPFSPSVLSAQVKSKIKRRK 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++IV      +L+          + L+ KE ++++      N   +KE   
Sbjct: 124 EILHENTDSNIIVHFPFKYDLNTYKFYKNDIELKLSSKETKLMKFFMEHPNQVFSKEQLY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ G +  +  I+ V+I  LR K+ +      +I+TVWG GY
Sbjct: 184 QSVWQGNNSDDNSIM-VYIKYLRNKIEDIPRKPKHIKTVWGIGY 226


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   +   L+   F V       DG+   K    D +ILD+ L D  G  
Sbjct: 17  RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R A    P+ +L+    + D++ GL+ GADDY+ KPF   ELVARI+A++RR +R
Sbjct: 77  VCREVR-ADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
             A++L + G L VN   ++V +    + LT  E++++  L+  +   ++++  L+    
Sbjct: 136 DDAEALRL-GALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRG 194

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +D  D    + ID+ + +LR+KL +      +I TV G GY
Sbjct: 195 IDWDAYD----RSIDILVSRLRQKLGDDPKRPTFIRTVRGVGY 233


>gi|152993671|ref|YP_001359392.1| two-component response regulator [Sulfurovum sp. NBC37-1]
 gi|151425532|dbj|BAF73035.1| two-component response regulator [Sulfurovum sp. NBC37-1]
          Length = 222

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++IEDD  LA  +   L   +  V   +    G+ L   ++FD IILDL L  + G EV+
Sbjct: 1   MIIEDDPELALILTNYLTKYDMEVIGAEDPYIGLSLLTQHDFDLIILDLTLPGMDGLEVI 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             +R    + P+ I S    I DKV G++ GADDY+ KP++  ELV RI+ I+RR+    
Sbjct: 61  PKIREIT-NIPIIISSARDDITDKVIGMERGADDYMPKPYDPRELVTRIKTILRRTHSVD 119

Query: 124 QSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      ++ V +  A T+  +GH + LT  EY ++ +L   KN ++++E  L       
Sbjct: 120 EKKEKKEEIFVADPQAHTITFRGHLLDLTAAEYDVLGMLIQHKNGSVSREQLLYESEHID 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D+  +K IDV I ++R+K++       YI+ + G GY+L +
Sbjct: 180 DDSSIKNIDVIISRIRQKIAKIDPDHIYIKPIRGVGYLLTD 220


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +    +  L+ E + VY    G++G EL   ++ D IILDL +    G+E
Sbjct: 4   RILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKNGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  K + P+ +L+      +++ GL  GADDY++KPF+  ELV RI+ I RR   
Sbjct: 64  LCEEIR-QKSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     LI   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++    E     + V + +LR+KL        +I T+WG GY    N ++ET
Sbjct: 183 LELIWGFEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPNERNET 237


>gi|331001856|ref|ZP_08325377.1| hypothetical protein HMPREF0491_00239 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412179|gb|EGG91573.1| hypothetical protein HMPREF0491_00239 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K L   +   LK+    V     GE GI+L +  + D IILD+ +    GFE
Sbjct: 3   RILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLAR-KQPDLIILDIMMPKADGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  A+R   +  P+  LS   S  DK++GL  G DDYI KPF  +EL+A+I A +RR + 
Sbjct: 62  VCNAIR-DDVLCPIIFLSAGQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANLRREKR 120

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H ++ +  G+LS+N+   TV++  + + LT  EY ++E L+L      ++E  
Sbjct: 121 SQYINAEHKRNKLYFGELSINIKECTVKIGSNDLLLTRLEYNIVEFLALHAGQIFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++    + +   +   I K+R K         YI TVWG GY
Sbjct: 181 YEKIWGYDSDGDSSTVVEHIKKIRAKFIEGGSDTEYISTVWGIGY 225


>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
 gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
          Length = 245

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 80  VCRRVQ-AHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAS 245


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
             L  ++      E +++DV I KLR+K+ +        E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQLFE 223


>gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 12/237 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L S+ F V       +  +     +FD I+LD+ L D  G ++
Sbjct: 7   ILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRLGSGQFDLIVLDVMLPDGSGLDI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K  TP+ +L+ +    D++ GL+ GADDY+ KPFN  EL+ARIRA++RRS   
Sbjct: 67  CRGLRDRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRRSTPE 126

Query: 123 AQSLIVTGDL----SVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +    S  L+ +T +V   +G  + LTG E+ ++++   R    L+++  L
Sbjct: 127 EAPAPPRARIYRFASYRLEPETRKVTDARGVAVDLTGAEFDLLQVFLDRPGRLLSRDQLL 186

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           + L  GR+ +P  + +DV + +LR+K S+   G  + +TV   GY L   A+ ET E
Sbjct: 187 D-LTQGRERDPLERSVDVLVSRLRRKFSDTGDGPLF-KTVRNGGYQL--TARVETVE 239


>gi|325678742|ref|ZP_08158349.1| KDP operon transcriptional regulatory protein KdpE [Ruminococcus
           albus 8]
 gi|324109568|gb|EGC03777.1| KDP operon transcriptional regulatory protein KdpE [Ruminococcus
           albus 8]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I   LK  ++       G + + L   ++ D IILDLGL DI G EV
Sbjct: 6   VLVVEDDKPIRNLITTTLKMNDYRFITAVRGREAVMLSASHKPDIIILDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
           +  +R      P+ I+S  S   DK+  L  GADDY++KPF+ +EL+AR+R I R   RS
Sbjct: 66  IEHIRTWS-DVPIIIVSARSEDRDKITALDKGADDYLTKPFSVDELLARLRVIQRRLMRS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + +  V G L ++  +  V +    +HLT  EY+++ LL+      LT +  +  ++
Sbjct: 125 ENVSVTEFVNGRLRIDYVSGCVHLDDEELHLTPIEYKLLCLLAKNVGKVLTHKYIIQSVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +     + VF+  LRKKLS+++  +  I+T  G GY
Sbjct: 185 GTPADNSEASLRVFMATLRKKLSDSS--QALIQTHIGIGY 222


>gi|193077711|gb|ABO12564.2| hypothetical protein A1S_2137 [Acinetobacter baumannii ATCC 17978]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ I   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHIYDDGYLKVDVTQRLVWIEQQPITLTRKEFQLLALLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 9/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +   + L L+ + F V   + G   + L + +  D  ILD+ +  + GFE+
Sbjct: 5   ILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMNGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR      P+ ILS  S   DK+ GL  GADDYI+KPFN  E+VAR++A +RR+  +
Sbjct: 65  TRALRKYS-EIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAARN 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMFLNHL 178
           +  +I   +LS++  A  +   G  I LT  EY+++ LL        TK    E  + + 
Sbjct: 124 SSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIGNY 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++G D      + V I KLR+K+ +      YI TV G GY L
Sbjct: 184 FEGDD----NTMMVHISKLREKIEDDPRNPRYIITVRGLGYKL 222


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCRQVRDKK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGY 233


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +A      L+   F   +   GEDG+      EFD I+LDL L    GF+
Sbjct: 3   KILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K   P+ +++      DK++G   GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  LCKEIRSNK-EIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121

Query: 119 --SRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             S G   ++    +V   L +    + V V    + L  KE++++  L+   N   +K 
Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + L+ ++      +V  + V I ++R K+   +    +IETVWG GY
Sbjct: 182 ILLDRIWGMDSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGY 228


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF V
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+   
Sbjct: 77  ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAI 136

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H++
Sbjct: 137 ENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-----IETVWGRGYVLRE 223
           +     +  I++ +I  LR+K+    G         I+T  G GY+LRE
Sbjct: 197 EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLRE 245


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|254420510|ref|ZP_05034234.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186687|gb|EDX81663.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L   +   L  + F   V D   D     +      +D I+LDLGL D 
Sbjct: 7   MRLLLVEDTARLGDLLREGLSRDGF---VVDWRRDIAGATDAVASAAYDLILLDLGLPDG 63

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + +RALR A   TP+ +L+    +ED+V GL +GADDY+ KPF+  EL AR RAI+R
Sbjct: 64  DGLDWVRALRRAADLTPILVLTARGGLEDRVTGLDAGADDYLVKPFDAAELSARCRAILR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       ++  G L  ++ A+        I L+ +E  ++E L  R  + +T+      
Sbjct: 124 RPGRRMAPVLQVGGLRFDVAARQAAHGDVPIDLSRREGDLLETLMRRAGSVVTRGSLEES 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LY   +      +++ + +LR+KL + AG    + TV G GY++R+
Sbjct: 184 LYAFNEPVTPNAVEMAVSRLRRKLDD-AGCTGVLHTVRGLGYLMRD 228


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 119 ---SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S G+    IVT  D+++N+    V +    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I KLR+K+        YI+TVWG GY
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGY 228


>gi|164688779|ref|ZP_02212807.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
 gi|164602255|gb|EDQ95720.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM
           16795]
          Length = 216

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 13/226 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M+IL++ED+  +   I + L+   + V+     EDGI   KF E    D I+LD+ +  I
Sbjct: 1   MKILVVEDEAPIRDLISINLQLVGYEVFT---AEDGIIAEKFLENQKVDLILLDVMIPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF ++   ++ K +TPV  ++   S+ D+V+GL+ GA+DYI KPF   EL+AR+  ++R
Sbjct: 58  DGFSLIE--KIKKHNTPVIFVTAKESVLDRVKGLRLGAEDYIIKPFETIELLARVEVVLR 115

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R   + Q+ I   ++ V+ + + V +    ++LT KEY+++ LL   KN  L+++  L  
Sbjct: 116 RYNKNKQT-IKFKNIEVDTEQRIVNLNNKEVYLTVKEYELLVLLLQNKNRALSRDQILER 174

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E + +D+ I ++R+KL      KN I+TV+  GY L E
Sbjct: 175 VWRFEYGGETRTVDIHIQRIREKLD----LKNNIKTVFKVGYRLEE 216


>gi|42519461|ref|NP_965391.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583749|gb|AAS09357.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|329667017|gb|AEB92965.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 221

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 117/203 (57%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED++ L+  +   ++S N+ V     G D +EL +   +D IILD+ +  + G 
Sbjct: 1   MKILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + ++D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRDD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDL++N+ A+   V  + I L  KE Q++  L L +    +    L H++ 
Sbjct: 121 QYTPNEVEVGDLALNV-AEQELVSHNSIRLGSKETQLLNYLMLNEGKEFSTSDLLAHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             +E    ++ ++I  LR+KL +
Sbjct: 180 DDEEASEDVVWIYISYLRQKLQS 202


>gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 219

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDDK++ + +E  L+ + + V     G + ++  +    D +ILD+ L +  G  +
Sbjct: 2   IYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIMLPEKDGLSI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + PV +L+  +   DKV GL  GADDYI+KPF+  EL++R++A++RRS+  
Sbjct: 62  LKEIREFS-NLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSKKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +   ++S+N   + V+V   +I LT KE++M+ LL       +++E FL  ++   
Sbjct: 121 DKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL        YI TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRSKLKETG---KYIHTVRNLGYKLGE 218


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 124/249 (49%), Gaps = 39/249 (15%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+ + I   L +E   VY  + G   + L + ++   IILD  L  + G  
Sbjct: 3   RVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R+  +  P+ +L+  +   D++ GL+ GADDYISKPF+  EL+AR+RAI+RR   
Sbjct: 63  VCRRVRLNYL-MPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILRRVDL 121

Query: 119 ------------------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
                                   +    Q  I+ G L ++ +A+  ++ G  I LT +E
Sbjct: 122 DQRLAQTLQQARTEPPVAQISPTITPTPVQPPIIRGPLEIDPNARIAKLHGESILLTPRE 181

Query: 155 YQMIELLSLRKNTTLTKEMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY 210
           Y+++ LL+       ++E  L  L    YDG D    + +D  + +LRKKL    G    
Sbjct: 182 YELLILLASHPGRAFSREFLLQQLWGYDYDGFD----RTVDTHVTRLRKKL---GGVGEK 234

Query: 211 IETVWGRGY 219
           I TVW  GY
Sbjct: 235 IVTVWSVGY 243


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 120/238 (50%), Gaps = 17/238 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 1   MLLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 61  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPA 120

Query: 121 ---GHAQSLIVTGD-----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
              G A+ +   G            L ++L A+ V      + LT  E++++ELL     
Sbjct: 121 LAAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNAG 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L      + ++     P  K + V++  LR+KL +       I TV G GYVLRE+
Sbjct: 181 IVLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPDAPQLIHTVRGVGYVLRED 237


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F V     G   +E+   ++ DA ILD+ +  + GFE
Sbjct: 7   KVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMPGMDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 67  LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+     +++   DL +N D   V   G  + L+  E+ ++  L L     L+K   L+
Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR+
Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKIDT--GDVPLIHTVRGVGYVLRK 231


>gi|167566116|ref|ZP_02359032.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
          Length = 219

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+EDD  L  ++ + ++ +     +V +L  D         +D I+LDL L D  G
Sbjct: 1   MRVLLVEDDPWLGEAVRVQIEKDGHPADFVGNLA-DARRHIAVATYDLILLDLLLPDGRG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR    + PV IL+ +  + +++ GL +GADDY+ KPF+  EL AR+ A+ RR 
Sbjct: 60  LDFLRELREGGSTVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+   L+  G+L+++    +V+    R+ LT  E+ ++E L       L+K      LY
Sbjct: 120 SGNPNPLVKLGELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              DE     I+V + +LRKKL     G + IETV G GY LR +
Sbjct: 180 SFNDEVGSNTIEVHVSRLRKKL-----GADMIETVRGLGYRLRRD 219


>gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 241

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 17/234 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120

Query: 119 S--RGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
               G  ++L          + T  + ++   + V    +R+  LT KE+ ++  ++ + 
Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++E  L  ++      E + +D  I KLR+KL  +  G   I+TVWG GY
Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEKS--GPQIIQTVWGVGY 232


>gi|308051430|ref|YP_003914996.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307633620|gb|ADN77922.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +      + + V   + G+ G+ L     +  I+LD  L  + G 
Sbjct: 1   MKILIIEDDATNRQYLSKGFSEQGYVVDCAEDGQQGLMLATSESYRLIVLDRMLPKLEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR    +TPV ILS +  ++++++GL++G DDY+ KPF+  EL+ R + ++ R  
Sbjct: 61  ALLAALRATGNTTPVVILSALGDVDERIKGLRAGGDDYMVKPFSFAELLIRAQRLMERPS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ S +   +L ++L A    V  H + L  KE+Q++  L   +   LT+ +    ++
Sbjct: 121 NDSRPSQLSLANLHLDLLAHKARVDDHTMTLQPKEFQLLRFLLEHQGQLLTRTLLFESVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P   +IDV I +LRKKL   AG + +IETV G GY
Sbjct: 181 DYHFDPGTNVIDVHIARLRKKLQE-AGARVHIETVRGAGY 219


>gi|184158657|ref|YP_001846996.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332874352|ref|ZP_08442263.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6014059]
 gi|183210251|gb|ACC57649.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322507532|gb|ADX02986.1| kdpE [Acinetobacter baumannii 1656-2]
 gi|323518572|gb|ADX92953.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332737431|gb|EGJ68347.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter
           baumannii 6014059]
          Length = 238

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ I   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHIYDDGYLKVDVTQRLVWIEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|110680627|ref|YP_683634.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456743|gb|ABG32948.1| two-component response regulator, putative [Roseobacter
           denitrificans OCh 114]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA ++   L    F V       +  E+    E+D  +LDLGL D  G 
Sbjct: 1   MRVLLVEDHPQLADAVRDALVRAGFAVDHAGTAAEAREMSSLAEYDIALLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR    + PV +L+    + D++ GL  GADDY+ KP    ELVAR RA++RR  
Sbjct: 61  ALLPTLR-RDGTVPVIVLTAREQLTDRLSGLDGGADDYVVKPVEMPELVARCRAVLRRPG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++  GDL+++  A +V V G  + L  +E  ++E L         + +    +Y 
Sbjct: 120 DRSGTVLNHGDLALDTAALSVTVAGTGVPLGRREVAVLEHLMRAAGRVSARRVLEEAVYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+  I +LR+ L+ A  G N + TV G G++L
Sbjct: 180 FDDEVSPNAIEASISRLRRTLAMAGSGANIV-TVRGIGWML 219


>gi|99082573|ref|YP_614727.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99038853|gb|ABF65465.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 242

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           MR LL+ED+  LA+++   L     + +V D   D     +     E+D I+LD+ L D 
Sbjct: 22  MRYLLVEDNDQLANAV---LDRLTLDGHVVDRAPDLGTADDFMATTEYDMILLDIMLPDG 78

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G + L+A R A+  TPV +L+  S + D+V  L  GADDYI KPF+  EL AR RA+ R
Sbjct: 79  DGRQFLQAHRAAQRDTPVIVLTARSEVSDRVSVLDLGADDYIVKPFDFSELEARCRAVQR 138

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G A ++   GD+  +  A T+ V G  + L  +E ++ E+     +   +K   ++ 
Sbjct: 139 RRSGGASNIHSFGDVVFDPLACTLTVNGREVRLRNRELRLFEIFIAAPDQVFSKSKLVDR 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+    +     I+V++ +LRK L    G +  I TV G GY L
Sbjct: 199 LFSYDVDASENAIEVYVGRLRKHLE---GARAQIVTVRGLGYRL 239


>gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RI L+EDDKA+A ++ L+L+SE F V +    GE    L     FD  ++D+ L D  GF
Sbjct: 3   RIFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNL-FDLALVDIALPDGNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIRA +R+  
Sbjct: 62  TVCTEIK-ERYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+  V G L V+  +  V   G  I L+  EY+++ +        +T+   L+ L+D
Sbjct: 121 RAGQAFEVCG-LCVDTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWD 179

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E      + V+I +LR+K+ N       I TV G GY L  N
Sbjct: 180 AAGEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRLGGN 224


>gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
 gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
          Length = 226

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 113/228 (49%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ LA  I+  L  E F+ Y     ED     K ++   I+LD+ L    G+  
Sbjct: 4   ILLVEDNQELAKLIQAFLCKEGFSYYYASSAEDAFVWLKVHQPQVIVLDIMLPGSDGYAF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R      P+ ++S  S+  DK+ G + GADDY+ KP + + L A+IRAI+ R    
Sbjct: 64  CQSVRQTS-DVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSKD 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTG-------KEYQMIELLSLRKNTTLTKEMFL 175
            QS     D  +N  A  ++V GH+++L         KEY ++ L       TL K+   
Sbjct: 123 KQS-----DQIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLF 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++    E E + + V I  LR K+   +     I+TVWG GY   E
Sbjct: 178 NEIWGMDSESENQTLTVHIKMLRSKIEKDSRNPQRIQTVWGIGYRYEE 225


>gi|312887240|ref|ZP_07746844.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300552|gb|EFQ77617.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVT--DLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+IL+IED++ L+ SIE    SE  N+  T  D     +     Y +D I+LD+ L    
Sbjct: 1   MKILIIEDEQGLSESIESYF-SEAGNICETAKDFAS-AMAKVSMYSYDCILLDINLPGGS 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L+ L+       V I+S  +S++DK+ GL  GADDY+ KPF+  EL AR+ AI+RR
Sbjct: 59  GMNILKYLKENHNPDGVLIISAKNSLDDKLAGLDLGADDYLVKPFHLSELKARVTAIIRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   ++S++L AK V+V    +  T KEY ++      K   ++K     HL
Sbjct: 119 KTFSGSNVLTFNEISIDLLAKEVKVNNQLVKFTRKEYALLLYFFANKGKVVSKNAIAEHL 178

Query: 179 Y-DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + D  D  +    I   +  +RKKL   AG K+YI+  +G GY L +
Sbjct: 179 WGDTADMADNFDFIYSHLKNVRKKLEE-AGAKDYIKASYGMGYKLTD 224


>gi|306834174|ref|ZP_07467294.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423747|gb|EFM26893.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/229 (37%), Positives = 133/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E ++V V   G  G++     +FD I+LDL L D+ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYSVVVETNGRLGLQTALDDDFDLILLDLMLPDMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R LR+ K  T + +++   SI D V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 64  ITRRLRLEK-ETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +G+     + G L +N   ++       I LT +EY ++ +L    N  +T+E  
Sbjct: 123 EFKREQGNQGKEGLLG-LRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREEL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L +++    + E  ++DV+I  LR K+ +  G ++YI+TV G GY++RE
Sbjct: 182 LANVWRYDTDIETNVVDVYIRYLRGKV-DIPGKESYIQTVRGMGYIIRE 229


>gi|256375858|ref|YP_003099518.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920161|gb|ACU35672.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 243

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E + V     G   + + + +  DA++LD+ L D  G 
Sbjct: 18  VRVLVVDDESTLAELMTMALRMEKWEVRTALDGTSAVRVAREFRPDAVVLDVMLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R    + PV  L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 78  EVLRRMRTEAPTLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 137

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A + +V GDL ++ + + V     ++ LT  E++++  L       L+K   L+ 
Sbjct: 138 VTESGAGTELVVGDLVLDEETREVRRGDDQVELTATEFELLRFLMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I++++I  LRKK+    G    I T+ G GYVL+
Sbjct: 198 VWSYDFGGQANIVELYISYLRKKID--VGRAPMIHTMRGAGYVLK 240


>gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
 gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  ++   E  L +      +   G   + L +   FD I+LDL L D  G+E
Sbjct: 5   RILIVEDDADISMIEEAYLNTAGLETKIVSEGSQVVPLLEKERFDLILLDLMLPDKSGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           + + +R  K+  P+ +++  +   DK+RG  +GADDYISKPF+  ELVAR+ A +R   R
Sbjct: 65  ICKEIR-DKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123

Query: 119 SR-GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           SR G A+        IV GDL +  +   V      I    +E+++++ L++  N   +K
Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++      +   + V I ++R+K+ + +     +ETVWG GY L
Sbjct: 184 EQLFEKIWGYDYVGDSATVMVHINRIREKIEDDSRKPKILETVWGAGYRL 233


>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 229

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 IDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A++ TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RRS
Sbjct: 61  TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +   +  K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKRS-DKPLLHTVHGVGYRLPEG 223


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  LA  +E  L    +  +++   ED +E      FD ++LD+ L  + GFE+
Sbjct: 6   ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  ++    P+ +++      D++ G + G DDY+ KPF+  EL  RIRAI++R R
Sbjct: 66  CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  + L+  GDL ++L    V + G  + +T  E++++  L  RK    ++E  L+ 
Sbjct: 126 RQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++D       + ID  I ++R+KL         I+TV G GY   E   D+  E
Sbjct: 186 VWDVDKSINTRTIDTHITRIREKLGETG---RMIKTVRGLGYKFEEKESDDHAE 236


>gi|307825786|ref|ZP_07656002.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307733094|gb|EFO03955.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  LA   +  L+ + F V VT  GE G  L    ++  +ILD+ L DI G E
Sbjct: 3   KILIIDDDVELAGLFKDYLEQDGFAVDVTHQGESGRRLALSGDYQLVILDIMLPDIKGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R+     PV + +      D++ GL+SGADDY+ KP    EL ARIRAI+RR++ 
Sbjct: 63  VLMRIRMES-RIPVLMFTARGDDVDRIIGLESGADDYVPKPCTPRELAARIRAILRRTQS 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + ++    IV G L +  + +        + LT  E+ ++E L++     +TK   L+ 
Sbjct: 122 VSDAVGNGPIVAGPLKIWSEKRKASWFDQDMDLTSTEFNLLETLAMNVGRIVTKNE-LSE 180

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              GR      + IDV +  +R+KL     G++YI+TV G+GY L
Sbjct: 181 KALGRPLARFDRSIDVHMSSIRQKLGCQNDGRSYIQTVRGQGYQL 225


>gi|152986647|ref|YP_001349071.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           aeruginosa PA7]
 gi|150961805|gb|ABR83830.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           aeruginosa PA7]
          Length = 244

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   I++ L+S+ +   +   G +G+ L      D ++LDLGL D+ G +
Sbjct: 16  RVLVVDDEPQIRKFIDISLRSQGYATLLAGTGREGLTLLASRGADLVVLDLGLPDMDGKD 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VL+ LR      PV +L+  S  ++KV  L +GA+DY++KPF+ EEL+ARIRA +R  + 
Sbjct: 76  VLKELRQWS-RVPVIVLTVRSGEDEKVALLDAGANDYVTKPFSVEELMARIRAFLRTVAT 134

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S I   G L ++L  + V V G  + L+ KE+ ++ LL  +    +T+   L  ++
Sbjct: 135 GTDDSPIYDDGILRIDLAQREVAVHGEAVTLSRKEFSLLALLVRQPGRLVTQAQILREMW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
               E +   + + + KLR KL + A    YI T  G G
Sbjct: 195 GPTHEEDTHYLRILVGKLRHKLGDDASAPRYIVTEPGVG 233


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L+   F       G   + L +    D ++LDL L D+ G +
Sbjct: 4   RILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVDGAD 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R      S P+ +L+      D++ GL+ GADDYI+KPFN  E+VAR+RA++RR+
Sbjct: 64  LTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123

Query: 120 RGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----E 172
            G +    V    G L ++LD     V    I+LT  E++++ +L        T+    E
Sbjct: 124 GGGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELIE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + Y+G +    + ID  I  LR+KL +AAG    IETV+G GY L
Sbjct: 184 QGPGYDYEGME----RTIDSHIKNLRRKL-DAAGAGVRIETVYGVGYRL 227


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+A+  S+   L    + V +   GE+ ++L      D  ILD+ +    G 
Sbjct: 1   MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V R LR      P+ +L+   S+E++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 61  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  +  +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LR+K + A      I TV G GY LRE A 
Sbjct: 181 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEANNETRLIHTVRGVGYALRETAP 231


>gi|303247581|ref|ZP_07333852.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491061|gb|EFL50955.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++EDD +A A+ ++ + +S     +V D G + +       +DA+++D  L  + G
Sbjct: 1   MRVLIVEDDLEAAAYMVKGLKESGYVADHVAD-GREALYRVAGETYDALVVDRMLPGVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++R +R A   TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+ A++RR 
Sbjct: 60  LTIVRTMRTAGNHTPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRG 119

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     + +   DL ++L A+TV   G  I L  KE+ ++E L       +T+ M L ++
Sbjct: 120 RAEVPDTTLKVADLEMDLVARTVRRAGKAIELKPKEFALLEYLMRHAGHVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV I +LR+K+ +    K  + T+ G GY LR++
Sbjct: 180 WDYSFDPQTNVIDVHISRLRQKI-DKGHDKPLLSTIRGAGYSLRDS 224


>gi|283787411|ref|YP_003367276.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950865|emb|CBG90542.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQSSDNSSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|255318228|ref|ZP_05359466.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|255304700|gb|EET83879.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
          Length = 223

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S + +LK   F+V+  + G DG++  +   ++ ++LDLGL  + G  
Sbjct: 3   KILIIEDDFMIAESTKTLLKLHQFDVHWVNNGIDGLKQLQQQNYNIVLLDLGLPMMDGML 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRSGL 122

Query: 122 HAQSLIVTGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   LS     ++L+          I L+ +E+ ++  L +  +   +K    +
Sbjct: 123 KNTVTDINKKLSHSGLELDLEQHIACFNDEPIELSNREWSILTALLMHPSKIFSKNDLED 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     ++V+I  LR KL     GK++I T+ G GY L
Sbjct: 183 KLYDFDSDVSSNTVEVYIHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|123440486|ref|YP_001004480.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|332159711|ref|YP_004296288.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|122087447|emb|CAL10228.1| two component system response regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|318603811|emb|CBY25309.1| copper-sensing two-component system response regulator CpxR
           [Yersinia enterocolitica subsp. palearctica Y11]
 gi|325663941|gb|ADZ40585.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330858935|emb|CBX69297.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L        ++  + +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIM-MPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  ++  L+ +   V V   G  G +L   +++D +I D+ L  + G 
Sbjct: 1   MKILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPLLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R+AK   PV +L+ + + +DKV G  +GADDY+ KPF+  EL+ RIRA++ R  
Sbjct: 61  ELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120

Query: 121 GHAQSL-IVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G   S+  VT   DL +N   K+V   G  I LT KE +++E +    +  LT+      
Sbjct: 121 GTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEIAEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     IDV+I  LRKK+      K  I T  G G++ 
Sbjct: 181 VWNTHFDTGTNFIDVYINYLRKKIDKDFSDK-LIHTRPGLGFIF 223


>gi|251788984|ref|YP_003003705.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247537605|gb|ACT06226.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 224

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   LAH ++  L    F V   DL  DG+   +L +   +  ++LD+ L  +
Sbjct: 1   MRLLLVEDHPELAHWLKKALSEVGFAV---DLVGDGVAADQLLQQEAYTLVVLDVSLPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  LR    + PV +L+  + + D+V+GL  GADDY++KPF   EL AR+RA++R
Sbjct: 58  DGLALLARLRKRGQNLPVLLLTARAEVADRVKGLNLGADDYLTKPFELAELEARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G  Q +   G LS + D     +Q   + LT +E  ++  L  R+   ++++     
Sbjct: 118 RSQGQIQEVQRLGALSWH-DEGYFLLQEKPLALTPREQAVLHTLMQRRGRPVSRQYLYEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   DE     +D+++ ++RKKL   AG    I T+ G GY L
Sbjct: 177 VFTLADEASPDSLDLYVHRIRKKL---AGSDVMIVTLRGLGYSL 217


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA ++   L+ E + V     G  G++L +  + D +ILD+ L  + GF V
Sbjct: 4   ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR  + + P+ +L+      D++ GL+ GADDY+ KPF+  EL+AR+RAI+RR+   
Sbjct: 64  CRILR-RETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDRQ 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  + L+   +L V+  ++ V    + I L  KE+ ++  L   +   L++++ L  +
Sbjct: 123 PTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLERV 182

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G D P + + +DV +  LR+K+        YI+TV G GY
Sbjct: 183 W-GYDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGY 223


>gi|120597698|ref|YP_962272.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146294165|ref|YP_001184589.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557791|gb|ABM23718.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145565855|gb|ABP76790.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319427508|gb|ADV55582.1| KDP operon signal transduction regulator, KdpE [Shewanella
           putrefaciens 200]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++I++I+D+  +   + + L SE ++V   + G+ G+      + + +ILDLGL D+ G 
Sbjct: 3   IKIVVIDDETQIRRMLRIALASEGYDVTEAENGQQGLSAVARQQPELVILDLGLPDMEGH 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL+ LR       V +LS  +  ++KV  L +GA DY++KPF+ EEL+AR+RAI+R   
Sbjct: 63  QVLQELR-GWSDVAVIVLSVRNQDKEKVAALDAGAQDYVTKPFSVEELLARVRAILRDHI 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++  G L ++L  + V+V    I LT KEY ++  L+   N  +T+   L  ++
Sbjct: 122 KPEKLPILDDGKLQIDLSRRLVKVDNQVIELTPKEYAVLSKLASSPNCVVTQTQLLKEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   + + +  LR+KL ++     Y+ T  G GY L
Sbjct: 182 GPAHTEDTHYLRIVVSHLRQKLGDSPSEPQYMRTEPGVGYRL 223


>gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
 gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 10/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           IL+++DD A+    ++++K    N Y+T     G E   F E    + IILDL L  + G
Sbjct: 5   ILIVDDDMAIN---DMLVKYLRKNGYITYSAYSGTEALLFLEKQKVNLIILDLMLPGLSG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +VL  ++  K + PV  LS     + K+  L++GADDY++KPF+ EEL+ARI  I+RR 
Sbjct: 62  EQVLAEIKKTK-NVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRI 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++  + SL+  GDL+++       ++  ++ LT  E+ ++++L        TK+M   
Sbjct: 121 YENQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L++   E     I+V I  LRKK++     K+YI+TVWG G+
Sbjct: 181 QLWNETLEGTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGF 223


>gi|54296742|ref|YP_123111.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
 gi|296106303|ref|YP_003618003.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Legionella pneumophila
           2300/99 Alcoy]
 gi|53750527|emb|CAH11929.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
 gi|295648204|gb|ADG24051.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Legionella pneumophila
           2300/99 Alcoy]
          Length = 223

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F       G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+AR+++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KESPILLKINDLTLNLQKHTAIRGDKKLPLTAKEFMLLTFMLKRSGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    IIDV I +LR+K+ N    K  I TV G GYVL
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVL 220


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ + H + + L+ E + V     G + +E  +  ++  +I+DL + +I G++V
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ +L+      D+V G + GADDY+ KPF+ +ELVAR++A++RRSRG+
Sbjct: 64  CRDVR-ERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S ++ G L +  D   V +   +I  T +E++++  L+   +   ++E  +  ++
Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 + + +D  + K+R+KL++    ++ + TVWG GY     A +E
Sbjct: 183 GYDFYGDARTVDTHVKKIREKLADPK-VRSMLATVWGVGYKFDPEAVNE 230


>gi|220919080|ref|YP_002494384.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956934|gb|ACL67318.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 227

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +A  +   L  E   V V   G    E      +D ++LD  L D+ G 
Sbjct: 1   MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   + TPV +L+   S  +KV GL++GADDY+ KPF+ +EL+ARI A+ R  R
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHR--R 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G ++++   + + V      LT +EY ++  L+      L++   +  ++ 
Sbjct: 119 GGATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    ++DV++  LR KL         IE+V G GY L
Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRL 219


>gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8]
 gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8]
          Length = 233

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 17/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +
Sbjct: 3   KALLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR   
Sbjct: 63  VCRDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRR--- 118

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H+Q       +  G L ++   + V   G  + LT  E++M+  L+ +    LT++  LN
Sbjct: 119 HSQLDEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLN 178

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +    ++G D    + +DV + KLR+KL +       I+TVWG+GY+    A
Sbjct: 179 AVRGIEFNGLD----RSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLFSPKA 227


>gi|299782927|gb|ADJ40925.1| Two-component response regulator [Lactobacillus fermentum CECT
           5716]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 19/243 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           M+IL+IED++++   + +  K E ++      GE+ +E  KF     +++ ++LDL L  
Sbjct: 1   MKILMIEDNRSVCEMMSMFFKKEKWDTTFAYDGEEAVE--KFAAEADDWEMVLLDLNLPK 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  KDGMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALR 118

Query: 117 RRSR-----GHAQSLIVTGDLSVN---LDAKTVE--VQGHRI-HLTGKEYQMIELLSLRK 165
           RR +       A+ +    D+  +   L++KT E  + G+ I +LT KE+ +++ L+ + 
Sbjct: 119 RRVQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKP 178

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 179 KQVFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSE 236

Query: 226 KDE 228
            D+
Sbjct: 237 ADD 239


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 13/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           +IL+ ED+ A+   + + L    ++V   D GE  ++  K+ E    FD  ILD+ +  I
Sbjct: 3   KILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQ--KYEENNGDFDVAILDVMMPGI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+V + LR       + +LS  +   DKV GL  GADDY++KPF+  EL+AR+ ++ R
Sbjct: 61  DGFQVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYR 120

Query: 118 R---SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R   ++ H+++     + +G+ ++NL  + +   G  I LT  E+Q++E         L 
Sbjct: 121 RVALAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALD 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   LNH++      E KI+DV I +LR K+ +      +I TVWG GY
Sbjct: 181 RIDILNHVWGDAYVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGY 229


>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +E  L    + V     G DG+   + +  D ++LD+ L D+ GFE
Sbjct: 12  RILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR   + TP+  L+  + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+ G
Sbjct: 72  ITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRT-G 130

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           H            ++  GDL ++  A  V   G  I L+  E++++ LL       L+K 
Sbjct: 131 HDVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKS 190

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + +I++ ++  LR+K+ +       I T  G GY LR
Sbjct: 191 RILDRVWGFDFSGDGRIVETYVRYLRRKIDHLD--PPLIHTERGVGYCLR 238


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E ++V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|120555780|ref|YP_960131.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325629|gb|ABM19944.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 222

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 7/222 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  L   +   L S+ F+V     G DG+ L    + D ++LD+ L DI G +VLR
Sbjct: 1   MIEDDDELRELLARYLASQGFSVREAANGRDGLALALGQDCDIVVLDIMLPDINGLDVLR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----SR 120
            LR  K   PV +L+      D++ G + GADDYI KP N  ELVAR++A++RR     +
Sbjct: 61  QLR-GKTHLPVILLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIAWDQK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +    GDL V    + +      + LTG EY+++++L     + + K   +     
Sbjct: 120 TEVDASRTYGDLRVEPGQRRIYQNDAPVELTGTEYEVLQVLLAHAGSVVRKTDLMQWALG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R E   + +D+ I  LRKKL N    +  IETV G GY  R
Sbjct: 180 RRLEAYDRTLDMHISNLRKKLGNDDPPR--IETVRGLGYSYR 219


>gi|91213453|ref|YP_543439.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UTI89]
 gi|117626180|ref|YP_859503.1| DNA-binding transcriptional regulator CpxR [Escherichia coli APEC
           O1]
 gi|218560980|ref|YP_002393893.1| DNA-binding transcriptional regulator CpxR [Escherichia coli S88]
 gi|237702944|ref|ZP_04533425.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA]
 gi|331660467|ref|ZP_08361401.1| transcriptional regulatory protein CpxR [Escherichia coli TA206]
 gi|331685652|ref|ZP_08386235.1| transcriptional regulatory protein CpxR [Escherichia coli H299]
 gi|91075027|gb|ABE09908.1| transcriptional regulatory protein CpxR [Escherichia coli UTI89]
 gi|115515304|gb|ABJ03379.1| transcriptional regulatory protein CpxR [Escherichia coli APEC O1]
 gi|218367749|emb|CAR05543.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli S88]
 gi|226902881|gb|EEH89140.1| transcriptional regulatory protein CpxR [Escherichia sp. 3_2_53FAA]
 gi|281180983|dbj|BAI57313.1| two-component response regulator [Escherichia coli SE15]
 gi|294490068|gb|ADE88824.1| transcriptional regulatory protein CpxR [Escherichia coli IHE3034]
 gi|307628987|gb|ADN73291.1| DNA-binding transcriptional regulator CpxR [Escherichia coli UM146]
 gi|315289598|gb|EFU48991.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315300224|gb|EFU59461.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|323949403|gb|EGB45292.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954316|gb|EGB50101.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|331052416|gb|EGI24453.1| transcriptional regulatory protein CpxR [Escherichia coli TA206]
 gi|331077123|gb|EGI48338.1| transcriptional regulatory protein CpxR [Escherichia coli H299]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALSLNPGRQEATFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 220

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  LA  +   L+   F+V   D     + + K   FD +ILDL L  + G E
Sbjct: 3   KILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEPFDLVILDLTLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A+R  +   P+ I S  S + DKV+ L+ GADDYI KP++  EL ARI +++RR   
Sbjct: 63  VCEAIR-ERQDIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVLRRYEA 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +Q    +  D   ++ +  +  +G  I LT  E+ ++  +  ++   +++E  ++++  
Sbjct: 122 KSQQKEESKSDFKCDMSSMMITYRGRNIDLTNAEFGILSYMIAKQGLVVSREDLIHNVNA 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   K IDV + ++R KL    G K+ IE+V G GY L
Sbjct: 182 INEDSSNKSIDVMVGRIRNKL----GDKSLIESVRGVGYKL 218


>gi|256850876|ref|ZP_05556265.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661087|ref|ZP_05862001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282932666|ref|ZP_06338079.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297205750|ref|ZP_06923145.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615938|gb|EEU21126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548024|gb|EEX24000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303176|gb|EFA95365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297148876|gb|EFH29174.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 20/234 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYE----FDAIILDLGLT 55
           + IL++EDD ++A  +EL  K E +NV   D+  DG+E   KF E    +D I LDL L 
Sbjct: 3   LNILMVEDDSSVAEMMELFFKKEQWNV---DIARDGLEAVDKFKERPDYYDMITLDLNLP 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V + +R    S P+ +L+   S  D+V GL+ GAD+Y++KPF+   L+ARI+A+
Sbjct: 60  KKDGIQVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKAL 119

Query: 116 VRRS---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
            RR+         +      IVT  L ++   + V     +I  LT KE+ ++  ++ + 
Sbjct: 120 HRRAALENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++  L  ++      E + +D  I KLR+KL     G   I+TVWG GY
Sbjct: 180 KQVFSRDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEV--GPQIIQTVWGVGY 231


>gi|197106109|ref|YP_002131486.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479529|gb|ACG79057.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  +  ++   L++  + V V   GE  +        DAIILDLGL D+ G E
Sbjct: 5   RLLLVDDEPQIVRALLPALQAAGYAVEVAGTGEAALTCLAAEPCDAIILDLGLPDMDGKE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V+  +R      P+ +LS      +K+  L +GADD+++KP    EL+AR+RA +R R R
Sbjct: 65  VIARIREWS-EAPILVLSARDLESEKIAALDAGADDFVNKPVGVGELLARLRASLRGRER 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q++  +GDL+++   + V VQG  + LT +EY ++ +L+      +T    +  ++
Sbjct: 124 RFASQAMFRSGDLAIDFARRRVTVQGEEVRLTPREYDLLRILARHAGRPVTHRQVIAAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + + + V + +LR+KL         + T  G GY L
Sbjct: 184 GAGAQVDAQFVRVLVAQLRQKLEAEPSAPRLLMTEPGLGYRL 225


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 TLNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|169343719|ref|ZP_02864718.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298279|gb|EDS80369.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 232

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GIE+ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIEIFKEFNPTLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +  ++ G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 15/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEF--DAIILDLGLTDIP 58
           +IL+++DD+ +   I++ L+S     Y T+   DG      F+E+  D ++LD+ L  + 
Sbjct: 7   KILIVDDDENICEIIKMYLESSG---YSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R  +  TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR
Sbjct: 64  GIDVLKWIR-KESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L 
Sbjct: 123 YNVENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLC 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            ++ G D P + + +DV I +LR+KL    GG N+ IETVWG GY
Sbjct: 183 EVW-GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGY 223


>gi|329736414|gb|EGG72683.1| putative KDP operon transcriptional regulatory protein KdpE
           [Staphylococcus epidermidis VCU045]
          Length = 237

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 68/202 (33%), Positives = 116/202 (57%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD A++H I++ L    + V    +G++     +    D I+LDLGL DI G ++
Sbjct: 5   LLVIEDDDAISHLIDVALTMNYYKVIKAKVGKEANFRIRTEHPDIILLDLGLPDIDGLKL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R   + TP+ ++S  +  E  V+ L  GA+DY++KPFN +EL ARIR  +R ++  
Sbjct: 65  IQQIR-EYVDTPIIVISARTEEETIVKALDYGANDYMTKPFNIDELKARIRVALRVTKKL 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q     G L ++ +AK V +    IHLT  E+Q++++LS      LT ++ L  L+ 
Sbjct: 124 DTVQDNFENGPLKIDFNAKMVYINNQSIHLTPYEFQLLDILSQHVGKVLTYQILLKALFG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLS 202
             ++ E+  + V +  LRKKL+
Sbjct: 184 YVNKCEMASLRVHMASLRKKLN 205


>gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 245

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 82  WQVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPVFTRLTING-LDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVQGMGYRLQ 241


>gi|329946281|ref|ZP_08293875.1| putative response regulator MprA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527573|gb|EGF54568.1| putative response regulator MprA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 242

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D+  +  S+   L+   + V +   G + ++L   Y+ D I+ D+ +  + G E+
Sbjct: 13  VLLVDDEAPIRRSLGPYLERSGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDGREL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R     TP+ +L+ + +  +++  L  GADDY+SKPF+  EL +RI A++RR+RG 
Sbjct: 73  VRRVRAGGAWTPIILLTQVDASYERISALDDGADDYLSKPFDPAELASRICAVLRRTRGM 132

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           AQ L     +V G+L +   ++ V + G  + LT K   +++ L        T+E  L  
Sbjct: 133 AQPLTSASRLVAGELVLERTSRRVTLAGREVALTPKATVLLDYLMSHPGELHTREDLLAS 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+        + +D  I ++R+ L + A    YIETV   GY  R   +
Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDAANPTYIETVPSVGYRFRAGVR 241


>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 245

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 80  VCRRVQ-AHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|226308089|ref|YP_002768049.1| two-component response regulator CseB [Rhodococcus erythropolis
           PR4]
 gi|226187206|dbj|BAH35310.1| putative two-component response regulator CseB [Rhodococcus
           erythropolis PR4]
          Length = 225

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 9/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +  + +L L+   F V     G  G++L    + D  +LD+ L D+ G  +
Sbjct: 6   ILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDLAVDAKPDIAVLDVMLPDLNGISL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  ++S PV +LS      D V GL++GADDY++KPF+   LVARIR+++RR   H
Sbjct: 66  CRRIR-EELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVESH 124

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + ++  GDL ++ +  TV   G  + LT  E +++ ++        ++   L+ ++
Sbjct: 125 SGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLIMVSVPRKVWSRSELLSDVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     + +I+DV I +LR K+     G   I TV G GY +
Sbjct: 185 DYDWGGDTRIVDVHIQRLRTKI-----GSEQIRTVRGFGYTM 221


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 10/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF---DAIILDLGLTDIP 58
           R+L+++DD  +A  ++  L++  F+V   D   DG+   +  E    D ++LDL L  I 
Sbjct: 54  RVLVVDDDPTVAEVVDRYLRNAGFDV---DRAADGLTALRMAETTVPDLVVLDLMLPGID 110

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R LR  +   PV +L+      D+V GL++GADDY++KPF+  EL  R+R+++RR
Sbjct: 111 GIEVCRRLREQR-PVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRR 169

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +     A   +  G L V+  A+TV   G  + LT +E+ ++  L        T+   L 
Sbjct: 170 AAEPPRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLE 229

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G    +   + V I +LR+K+ +       + TVWG GY
Sbjct: 230 QVW-GWSYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGY 271


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+A+  S+   L    + V +   GE+ ++L      D  ILD+ +    G 
Sbjct: 4   MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V R LR      P+ +L+   S+E++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 64  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  +  +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LR+K + A      I TV G GY LRE A 
Sbjct: 184 LEEVW-GYDFPTSGNALEVYIGYLRRK-TEANNETRLIHTVRGVGYALRETAP 234


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K++A  ++  L+ E F+V     G + +E  K  + D ++LD+ L    G EV
Sbjct: 5   ILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +   P+ +L+   S  DKV GL+ GADDY+ KPF+  EL+AR++A +RR +  
Sbjct: 65  CREVR-KQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQVA 123

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A      Q  I  G+LS+  +A  V+ +G  + LT +E+++I  L       +T+E  L 
Sbjct: 124 ADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +V+ +DV + +LR+K+ +     N+I T  G GY L
Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGYFL 228


>gi|88809226|ref|ZP_01124735.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88787168|gb|EAR18326.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +   L  ++      + G + + L +   FD ++LD  L D  G E
Sbjct: 8   QLLIVDDDPELLQFLLEELSQDSIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR +  +TPV +L+    +ED+V+ L  GADDYI+KPF   EL AR+RA +RRSR 
Sbjct: 68  ICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSRY 127

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL +NL  +TV      + LT +E+ ++  L   + T   +E  L+ 
Sbjct: 128 PSVERPSEQLTLGDLRINLMTRTVRRGERDVSLTQREFDLLAFLVKHQGTVQPREQILDS 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +   +DV++  LR+KL  A   K  + TV G G++ R
Sbjct: 188 VWGAPFVGDPNTLDVYMGYLRRKLEGAELPK-LLHTVRGVGFMAR 231


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K L   +   LK E  +V     G++ + L +  ++D II+D+ L +  G+ 
Sbjct: 5   RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ IL+  S   DK+ G   G DDY++KPF+ +ELVAR++A+++RS  
Sbjct: 65  ICKRIR-EKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++LIV G L V+     V +QG R+ LT KEY ++ +    +N  L++E+ L+ ++
Sbjct: 124 QLSTETLIVQG-LKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +++ +D  + +LR KL         I+TV G GY
Sbjct: 183 GYDYYGDLRTVDTHVKRLRHKLKEMG---EQIKTVRGLGY 219


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD ++     L L+   F V     G  G+   +    D I+LD+ L  + G +
Sbjct: 37  RVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLDGLQ 96

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +  + P+ +L+  +   D V GL+ GADDY+ KPF+  ELVAR+R+++RR+  
Sbjct: 97  VCREIRRSN-AVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVA 155

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G L ++  A      GH + LT  E++++  L+ R     T+E+ L  +++
Sbjct: 156 APEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVWE 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +++DV + +LR K+ +       I TV G GY L
Sbjct: 216 QGYLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 7/222 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++IEDD ++A      L+ + F   +   G +G+      +FD I+LDL L  I G+E+ 
Sbjct: 1   MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYEIC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRGH 122
           R +R  K   P+ +++      DK+RGL  GADDYISKPF+  ELVAR++A + +  R  
Sbjct: 61  RKIR-GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLT 119

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             S++ +     G + +N     V +  H +    KEY+++  L    +   +KE     
Sbjct: 120 TGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      ++K + V I +LR+K+        YI+TVWG GY
Sbjct: 180 IWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGTGY 221


>gi|260221284|emb|CBA29695.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 226

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG--IELC-KFYEFDAIILDLGLTDI 57
           M ILL ED+ +L   +   L+     V   D   DG  +EL     ++DA++LDLGL   
Sbjct: 1   MHILLAEDEHSLGEWLSKALEQSGHKV---DWRNDGRLVELALGDTDYDALVLDLGLPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR++R      PV +L+   S+ ++V  L  GADD++ KPF   EL AR+ A+VR
Sbjct: 58  SGTDILRSIRSRDNRLPVLVLTARDSLTERVNTLNQGADDFLPKPFALAELEARLTALVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RG        G L+ +   +   + G  + L+ +E+ +++ L +R    L+++  ++ 
Sbjct: 118 RARGSEHPRFAAGPLNFDTVTRQFTLHGAMLALSPREHALLKALIMRSGEPLSRQQVMDR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++    + +   ID+ + +LRK+L ++     +I T  G GYVL  +   ++
Sbjct: 178 IFSDESDVQPSAIDMLLHRLRKRLEHSG---VHIHTYRGLGYVLESDTPSQS 226


>gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 216

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLTAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTKET 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 ETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 212


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E+      D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLR-QRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++++   V V G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV I +LR K+ +       I TV G GY
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGY 222


>gi|293607635|ref|ZP_06689969.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292814068|gb|EFF73215.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 237

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A ++   L++  F   V   G   +E  K   FDA+ILD+GL  + G  
Sbjct: 12  RVLIVEDDHIIAGNLYSFLEARGFLPDVAYTGHAALERVKAQRFDALILDIGLPGMDGNA 71

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL  LR   ++  PV +L+   S+EDK+ G   GADDY++KPF   E+ AR+ A+++RSR
Sbjct: 72  VLHTLRNDMRVDVPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRSR 131

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   +++   G L  +  +++V V G  +HLT K   ++E L       + +E   + L+
Sbjct: 132 GATVEAVREFGPLKYDTRSRSVVVNGQPVHLTRKASLIMEALMRDPGRVVAREELESLLW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G + P    +   +  LR+ L++A  G + IET+ G G+ L  N 
Sbjct: 192 -GNEPPSSDALRSQVHLLRRALADA--GFDGIETLHGTGWRLTLNG 234


>gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 247

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +LA  + + L+   ++V V   G + +++ + Y  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R+   + P   L+   +++D+V GL +G DDY++KPF+ EE++ R+  IV+R+ 
Sbjct: 82  ELLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAG 141

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+  + +  GDL +N D + V      + LT  E++++  L       ++K   L+ +
Sbjct: 142 VIAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +V I++++I  LRKK+   A     I TV G GY+L+
Sbjct: 202 WNYDFGGQVNIVELYISYLRKKIE--ANHPPMIHTVRGAGYILK 243


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  +   L+ E +   VT  G +G+E  +    D I+LDL L  + G E
Sbjct: 3   KVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGTE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V  ALR +  +   PV +L+      D+V G + GADDYI KPF+  EL+ RIRAI+RRS
Sbjct: 63  VCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRS 122

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +    I  G + ++  +  V V G  I LT  EY+++  L+      + +E+ L 
Sbjct: 123 SQEPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +D  + +LR KL +A      I+TV G GY L E
Sbjct: 183 DVWGYNFVGDTRTVDTHVTRLRNKLGDAG---EMIKTVRGFGYKLEE 226


>gi|222056071|ref|YP_002538433.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565360|gb|ACM21332.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 232

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   ++  L +  F+++  D G   +        D I+LDLGL D+ G E
Sbjct: 10  RILIVDDEPAIQRFLQTALDTGEFSLHKADDGHSALAAAVATRPDIILLDLGLPDMDGVE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV+ L +GADDY++KPF   EL+AR+R  +RRS  
Sbjct: 70  VIRRVREWS-QVPIIVLSVREREDDKVKALDAGADDYVTKPFGIPELLARMRVALRRSLQ 128

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +  +G L V+L  + V+VQ   + +T  EY ++ LL       LT    L  ++ 
Sbjct: 129 EVVEPVFRSGGLEVDLHLRKVKVQEEDVQVTPTEYDLLRLLVTHAGRVLTHAHLLKQIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++ V I  LR K+        YI T  G GY L+
Sbjct: 189 VGYVEQPHVLRVNISNLRHKIEKDPSRPRYIITEPGVGYRLK 230


>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 298

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 3/181 (1%)

Query: 46  DAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK 105
           D +ILDL L D  G E    L+      PV +L+    + DKV GL+ GADDY+ KPF  
Sbjct: 118 DLVILDLMLPDGDGLEFCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFET 177

Query: 106 EELVARIRAIVRRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
            EL+ARI+A +R + G   A  L+  G+L ++L  +TV+V G  ++LT KE+Q++  L  
Sbjct: 178 SELLARIKARLRANPGAGTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLME 237

Query: 164 RKNTTLTKEMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +N  +T+E     L+ D +     ++IDV I  LR+K+       ++I TV GRGY   
Sbjct: 238 NRNHLVTREEIRKRLWRDSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFM 297

Query: 223 E 223
           E
Sbjct: 298 E 298


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 18/232 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGVS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR  G
Sbjct: 72  LCRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRF-G 129

Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           H           A   +  GDL V+ +   V  +G RI LT  E +++   S    T L+
Sbjct: 130 HAGGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLS 189

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 190 RDQLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLR 236


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  + +V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 216 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 253


>gi|160936956|ref|ZP_02084320.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440146|gb|EDP17893.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC
           BAA-613]
          Length = 221

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+KA+++ I+  L    ++      GE  +E+ +   FD +ILDL L  + G +
Sbjct: 3   RILIAEDNKAISNLIKTHLSFAGYDTSQVYDGEFALEILEAEPFDLLILDLMLPKVSGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L   RV     P+ +++ +  +  KV+ LQ GADDYI+KPF+  +L+AR+ A++RR R 
Sbjct: 63  ILA--RVKDCQMPIIVVTALDDLSSKVQCLQVGADDYITKPFDSMDLLARVGAVLRRCRR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              SL V  ++SV+ D   V   G  I LT KE+ ++  L    +  LT++  L+ ++  
Sbjct: 121 RPMSLNVR-NISVDPDQHRVLKDGKEIELTPKEFDLLYYLCSNCDKVLTRKEILSDVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E + +D+ I +LRKKL         I+T+   GY+L+
Sbjct: 180 NYVGETRTVDIHIQRLRKKLDWEGA----IQTITKVGYLLK 216


>gi|330997603|ref|ZP_08321449.1| putative transcriptional activator protein IrlR [Paraprevotella
           xylaniphila YIT 11841]
 gi|329570314|gb|EGG52049.1| putative transcriptional activator protein IrlR [Paraprevotella
           xylaniphila YIT 11841]
          Length = 227

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L +++   L  E F V   +     +E    Y++D ++LD+ L    G 
Sbjct: 1   MKILLIEDEEELRNTVREYLTREKFIVECAEDYASAMEKVNDYDYDCVLLDIMLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  L+  +    V I+S   SIEDKV GL  GADDY++KPF+  EL AR+++++RR +
Sbjct: 61  SILAHLKRTRKQESVIIISAKDSIEDKVEGLDLGADDYLAKPFHLAELNARVKSLLRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + IV G+L++  D +   V G+ ++L  KE+ ++       N  + +      ++ 
Sbjct: 121 AGGDTSIVLGNLTLVPDTRKATVDGNELNLNRKEFDLLYYFISNPNRLINRMALAESVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D+ + +  I   +  LRKK+  AAG +  I+ V+G GY L
Sbjct: 181 DHIDQADSLDFIYSQVKNLRKKMK-AAGAQAEIKAVYGFGYKL 222


>gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 258

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I   L+ E + +   + GE+ +E  +  +FD IILD+ L  I GFEV
Sbjct: 8   ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVMLPGIGGFEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      PV +L+  S+  D++ GL +GADDY+ KPFN +E + R+  ++RRS  +
Sbjct: 68  CQKIRALDSRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGMLRRSAWY 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +      GD  V L +     +   I LT  E +M+ L   R+   + +   L  +
Sbjct: 128 RPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREAEAIPRGEILESV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E + +D FI +LRK          + +TV G GY
Sbjct: 188 WGYATDAETRTLDNFIVRLRKYFEPEPSRPVFFQTVRGVGY 228


>gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K-12 substr. W3110]
 gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
 gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW
 gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K12 substr. W3110]
 gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. DH10B]
 gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
          Length = 223

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  + +V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|85712340|ref|ZP_01043390.1| DNA-binding response regulator [Idiomarina baltica OS145]
 gi|85693783|gb|EAQ31731.1| DNA-binding response regulator [Idiomarina baltica OS145]
          Length = 228

 Score =  115 bits (288), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+ A+A  +   L+   +NV     G+ GI+L    +F+ I+LDL L D  G  V
Sbjct: 7   ILLIEDNLAIARQVVDFLEGLGWNVDFASSGQLGIKLALNAQFNVILLDLNLPDTDGLAV 66

Query: 63  LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +A++  A+ + P+ +++   + EDK +G   GADDY++KP++  EL  R  A+ RR   
Sbjct: 67  CQAIKEQAQRNQPILMVTARDAFEDKAKGFGHGADDYLTKPYDLRELALRCEALSRRPEL 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H  SL++ G L V++ A T   Q   I LTG   +++  L +     +++   ++ ++ G
Sbjct: 127 HRDSLLIEGGLRVDMRAMTAHWQQTPIPLTGIGLKLLSELLVAHPYPVSRSNLISAIW-G 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            D PE   +   I  LRK L + + G+  + T+   GY L+
Sbjct: 186 ADPPESNALKSHIYSLRKVLEHVS-GRQLLFTISNVGYQLK 225


>gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
          Length = 223

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSQSVSRDNICITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   LK E F V++ + G+ GI +CK  + D +ILD+ +  + G E
Sbjct: 3   KILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDGIE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   +R  K   +  +C L+  +    ++ GL +GADDYISKP     L++R+ A++RR 
Sbjct: 63  VCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRRK 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                    T DL +N +   V   G  +HL  KE++++ LL+ R      +++ L  ++
Sbjct: 123 ESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + IDV + KLR+K+     G +YI+TV G GY  R
Sbjct: 183 GTDIIVGDRTIDVHVRKLREKI-----GDDYIQTVKGIGYKFR 220


>gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39]
 gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI39]
          Length = 223

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 124/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHY 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 TLNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 216


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G ++++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ IE       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR  G
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRM-G 122

Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            + S+  T            G L V+ + + V   G RI LT  E+ ++ELL       +
Sbjct: 123 PSISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVV 182

Query: 170 TKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 183 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F V V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  +   PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G 
Sbjct: 64  CKQLR-TRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G + +++D  TV V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKL 227


>gi|260554600|ref|ZP_05826821.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411142|gb|EEX04439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 238

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSTVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDVTQRLVWIEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D+K +   +    K  NF V     GED ++  +  +FD ++LD+ +    GF+
Sbjct: 3   KVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI AI+RR   
Sbjct: 63  VCREVRKFS-NVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++ +    +L ++L+  TV++    I LT KE +++  L+  +N   T+E  L+ +
Sbjct: 122 KNDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +D  I +LR K+ N    K  I+T+WG GY
Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGY 222


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ + + I   LK+EN+N+     G+D +E      F  IILDL L  I G E
Sbjct: 5   KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKYD-NTFQLIILDLMLPYIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R    + PV ILS  +   D+V GL  GADDY+ KPF+  EL AR++A +RR   
Sbjct: 64  VLRKIR-ENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYIY 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +  H ++  +T   S+ LD    +   +   ++LT KE+++++      +   TK    
Sbjct: 123 YNNVHDKNPTLTYK-SLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N +++     +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 182 NGVWENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKLGE 229


>gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 216

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GITYIKTVKGIGY 212


>gi|184154873|ref|YP_001843213.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260663097|ref|ZP_05863989.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183226217|dbj|BAG26733.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260552289|gb|EEX25340.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 19/243 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           M+IL+IED++++   + +  K E ++      GE+ +E  KF     +++ ++LDL L  
Sbjct: 1   MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVE--KFAAEADDWEMVLLDLNLPK 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  KDGMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALR 118

Query: 117 RRSR-----GHAQSLIVTGDLSVN---LDAKTVE--VQGHRI-HLTGKEYQMIELLSLRK 165
           RR +       A+ +    D+  +   L++KT E  + G+ I +LT KE+ +++ L+ + 
Sbjct: 119 RRVQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKP 178

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 179 KQVFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSE 236

Query: 226 KDE 228
            D+
Sbjct: 237 ADD 239


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 226


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +    K +N+     + G+  +   K    D I+LDL L D+ G E
Sbjct: 5   KILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDVDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R A  S P+ +L+  S   D+++GL+ GADDYI KPF+ +E++ARI+A++RR+  
Sbjct: 65  LCKKIR-AFSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTSQ 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++I   +  ++ D     + G  I  T  E+++  L         T+E  +N++Y  
Sbjct: 124 PKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYSD 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   + ID  I  +RKK+++   G N I  V+  GY  +E
Sbjct: 184 TTDISDRNIDTHIKNIRKKINDIQAGLNPIAAVYSVGYKFKE 225


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 119 ---SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S G+    IVT  D+++N+    V++    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I KLR+K+        YI+TVWG GY
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGY 228


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+G+ +      D I+LD  + ++ G EV
Sbjct: 8   VLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    S P+ +LS  S   DKVRGL++GADDY+ KP++  ELVAR+R  +RRSR
Sbjct: 68  CRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRSR 127

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  L +  GD+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 -GRDIYVDTRTVDVHIGRLRKALTQ-FGGDDPVRTVRGAGYAL 228


>gi|126444717|ref|YP_001061957.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126224208|gb|ABN87713.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 220

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDGALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|315638148|ref|ZP_07893330.1| DNA-binding response regulator [Campylobacter upsaliensis JV21]
 gi|315481684|gb|EFU72306.1| DNA-binding response regulator [Campylobacter upsaliensis JV21]
          Length = 223

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE------DGIELCKFYEFDAIILDLGL 54
           M++L+IEDD   A  +   L    FN+ +T+         DG++      +D +ILDL L
Sbjct: 2   MKVLMIEDDADFAQLLSEYLV--QFNINITNYESPKNALNDGLD-----GYDCLILDLTL 54

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G EV + +R AK   P+ I S    + DKV GLQ GADDY+ KP++ +E+ ARI +
Sbjct: 55  PGIDGLEVCKEIR-AKSHIPIIISSARGDLSDKVMGLQIGADDYLPKPYDPKEMYARIIS 113

Query: 115 IVRRSRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +VRRS+   ++    V  D  V+     +   G  + LT  EY+++E L  +   ++++E
Sbjct: 114 LVRRSKRIEENTKESVNSDFKVDKRRHEISCNGRPLTLTPAEYEILEYLISQHGLSISRE 173

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++H    RD  + K +DV I +LR K+ + +    YI +V G GY L
Sbjct: 174 QLVSHCKSLRDR-DSKSLDVIIGRLRTKIGDNSRAPKYIFSVRGIGYKL 221


>gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora
           inyonensis]
          Length = 231

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  +   +   L+     V       DG+        D ++LDLGL D+ G E
Sbjct: 3   RLLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALENRPDLVVLDLGLPDLDGRE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR A    PV + +      + VR L +GADDY+ KPF   +L AR+RA++RR   
Sbjct: 63  LLRMLR-AVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G     +V G L V+  A+ V + G  + LT +E+ ++  L+ R    +TK   +  +
Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               Y G D    K +DV +  LR+KL   A    Y+ TV G G  L
Sbjct: 182 WQIPYGGAD----KTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 236

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 17/232 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED   LA +I+  L+++++ V+    G+  + +      D +ILD  L ++ G EV
Sbjct: 4   ILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKERPDLVILDWMLPELDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R     TPV +L+  S   D+V GL+ GADDY++KPF+  EL+AR+RA++RR+   
Sbjct: 64  LRRMRQVA-PTPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLRRTELL 122

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       AQ L+  G LS+NL+     ++G  + L+  E+ ++ LL         
Sbjct: 123 EQMLRADRTLAAAQVLVYEG-LSLNLEIHQAMLEGVELDLSPNEFALLHLLLRNPGRAFH 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   L+ ++        + +D  + +LR+KL       + IETVWG GY  R
Sbjct: 182 RPYLLDLVWQSEANVTERAVDTTVKRLRQKLGMLG---DCIETVWGIGYRWR 230


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IED+KA++  I+  L+ + + VY    GE+G+ L K  + D ++LD+ L    G E
Sbjct: 3   RIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ I+S  +   DKV  L+ GADDY++KPF   E++AR++A +RR   
Sbjct: 63  ICKEIRQTK-EVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMT 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +V  +L ++L    V      I LT +E+++++ L   K    ++E  L
Sbjct: 122 EGNKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +V+ +DV I +LR+K+ + A    Y+ T  G GY  R
Sbjct: 182 EKVWGYEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYFR 228


>gi|226361427|ref|YP_002779205.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226239912|dbj|BAH50260.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 219

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I ++EDD  +  ++   L +          G D   L      DA+ILDLGL D  G 
Sbjct: 1   MQIAVVEDDDGVGDALVEALGTHGHEAVRMRRGSD--LLLGHRGMDAVILDLGLPDADGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR A    PV IL+        VRGL+ GADDY+ KP    EL+AR+  + +R R
Sbjct: 59  QVLRQLR-AVSDVPVVILTARDDERSVVRGLRGGADDYLVKPARLAELLARLDVVTQRRR 117

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+  +  GD+ V+L A+ VEV G  + LT KE++++E+L  R    ++++  ++ 
Sbjct: 118 ATGPSAEQTVTEGDVVVDLAAREVEVGGAPVTLTAKEFELLEVLVTRPGAAVSRQQLMDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +DV +  LR KL    G    I T+ G GY
Sbjct: 178 VWGDAYVAISRTLDVHMTGLRAKL----GRPGLISTIRGYGY 215


>gi|134096807|ref|YP_001102468.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909430|emb|CAL99542.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 219

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 9/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  L  + +L L+   ++V     G  G E  +       +LD+ L ++ G E+
Sbjct: 1   MLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIEL 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      PV +LS  +   D V+GL++GADDY+ KPF+   LVARIR++VRR R  
Sbjct: 61  CRRIRGCS-HVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRRE 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL V+LD+  V   G  + LT  E +++   + +    LT+   L  ++
Sbjct: 120 PAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     + +++DV + +LR K+     G+  +ETV G GY L
Sbjct: 180 DYAWGGDTRVVDVHVQRLRAKI-----GRERVETVRGFGYKL 216


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 17/229 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD +L   + L L+    +V     G   +        D I+LD+GL ++ GF
Sbjct: 1   MKILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR A+   PV  L+      D++ GL+ GADDY++KPF+  E+VAR+ AI+RRS 
Sbjct: 61  EVCRRLR-ARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSG 119

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  RGH       G L+++ +A+     G  + LTG E+QM++ L        T+ 
Sbjct: 120 TPARDDTRGH-------GALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRA 172

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++    +   + +D  +  LR+KL++ AG  + IETV  +G  L
Sbjct: 173 ELAAAVWGAGAQQSDRTMDSHLRNLRRKLAD-AGIPDAIETVHAQGMRL 220


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 13/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++++++EDDK L   +E+ L+   ++V   + G D IE  K    + +ILD+ L D+ G+
Sbjct: 5   VKLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  K    + +L+ +   +DK+ G ++GADDY++KPF+ EEL+ARI+A++RR  
Sbjct: 65  EVAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
                 I  G L +  + +TV   G  + L+  E+ ++  L+  K+  ++KE  L+ +  
Sbjct: 125 ISISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWG 184

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y G D      ++V++  +RKKLS        I+T+ G GY L
Sbjct: 185 IDYYGSD----NTVEVYVNYIRKKLS-----PELIKTIRGVGYKL 220


>gi|269837967|ref|YP_003320195.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787230|gb|ACZ39373.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           IL++ED+  L   IE +L++ ++ V     G D +E+         ++  L   DI GF+
Sbjct: 10  ILVVEDEPRLVRLIESILRTADYRVLTAATGADALEMVALEAPDLILLDLLLPGDIDGFD 69

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  RV + S  P+ +L+  +   DK+RG + GADDY++KPF+ +EL+AR++A++RRSR
Sbjct: 70  VCR--RVREFSDVPIIMLTARTQETDKLRGFELGADDYVTKPFSAKELLARVQAVLRRSR 127

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A   + +  GDL ++L A  V   G  IHLT  E++++  L+ R    +  +  L  +
Sbjct: 128 GFAAGPARLTVGDLVIDLAAHRVTRGGEDIHLTPTEFRLLVALARRPGRVIPHDQLLTEV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      EV+ +  ++  LR+KL        ++ T  G GYVL
Sbjct: 188 WGAEYRDEVEYLRTYMRYLRQKLERNPTRPTHLLTEPGVGYVL 230


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 3/218 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+  A SI+L L+ + F   +   G   +ELC+    D +ILD  L  + G E
Sbjct: 3   RILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDGAE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  + P+ +L+  ++  DK+ GL+ GADDY++KPF+  ELVAR+ A++RR+  
Sbjct: 63  ICRRLRAAG-NIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVLRRA-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                     ++++ +  T+   G  I LT  E++++E L        ++   L  ++  
Sbjct: 120 APAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E   + +DV I  LR+K+ +       I T++G GY
Sbjct: 180 DYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGY 217


>gi|16767325|ref|NP_462940.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56415905|ref|YP_152980.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182520|ref|YP_218937.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161505430|ref|YP_001572542.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161617190|ref|YP_001591155.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167551449|ref|ZP_02345204.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167991591|ref|ZP_02572690.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232999|ref|ZP_02658057.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237683|ref|ZP_02662741.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168244188|ref|ZP_02669120.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168263040|ref|ZP_02685013.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168467400|ref|ZP_02701237.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821593|ref|ZP_02833593.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194442670|ref|YP_002043284.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451391|ref|YP_002048063.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472068|ref|ZP_03078052.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736327|ref|YP_002116983.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250942|ref|YP_002148990.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264290|ref|ZP_03164364.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364834|ref|YP_002144471.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198245082|ref|YP_002217986.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200388103|ref|ZP_03214715.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930324|ref|ZP_03221301.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354363|ref|YP_002228164.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859247|ref|YP_002245898.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224585872|ref|YP_002639671.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912204|ref|ZP_04656041.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422624|gb|AAL22899.1| response reguator in two-component regulatory system with CpxA
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56130162|gb|AAV79668.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|62130153|gb|AAX67856.1| response reguator in two-component regulatory system with CpxA,
           regulates expression of protein folding and degrading
           factors (OmpR family) [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160866777|gb|ABX23400.1| hypothetical protein SARI_03585 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366554|gb|ABX70322.1| hypothetical protein SPAB_05031 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401333|gb|ACF61555.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409695|gb|ACF69914.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458432|gb|EDX47271.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711829|gb|ACF91050.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630213|gb|EDX48853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096311|emb|CAR61912.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197214645|gb|ACH52042.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242545|gb|EDY25165.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289336|gb|EDY28701.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939598|gb|ACH76931.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605201|gb|EDZ03746.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320728|gb|EDZ05930.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274144|emb|CAR39155.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323751|gb|EDZ11590.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330025|gb|EDZ16789.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332758|gb|EDZ19522.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205336884|gb|EDZ23648.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205341789|gb|EDZ28553.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348222|gb|EDZ34853.1| transcriptional regulatory protein CpxR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206711050|emb|CAR35422.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224470400|gb|ACN48230.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|261249176|emb|CBG27037.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267996354|gb|ACY91239.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160567|emb|CBW20097.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312915175|dbj|BAJ39149.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088470|emb|CBY98229.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225352|gb|EFX50410.1| Copper-sensing two-component system response regulator CpxR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322613178|gb|EFY10122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322619195|gb|EFY16078.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322626061|gb|EFY22873.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626479|gb|EFY23285.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632408|gb|EFY29156.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635110|gb|EFY31831.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642687|gb|EFY39277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647976|gb|EFY44448.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322650726|gb|EFY47127.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652909|gb|EFY49246.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657224|gb|EFY53504.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662288|gb|EFY58503.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666823|gb|EFY62999.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672093|gb|EFY68208.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675815|gb|EFY71887.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681769|gb|EFY77795.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684036|gb|EFY80045.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|322717018|gb|EFZ08589.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
 gi|323132404|gb|ADX19834.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323193308|gb|EFZ78523.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197665|gb|EFZ82798.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323200761|gb|EFZ85832.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207234|gb|EFZ92186.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323211436|gb|EFZ96277.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323218518|gb|EGA03226.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220999|gb|EGA05431.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225975|gb|EGA10194.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231655|gb|EGA15767.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236096|gb|EGA20174.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239482|gb|EGA23531.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243924|gb|EGA27935.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249287|gb|EGA33204.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250470|gb|EGA34353.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258924|gb|EGA42576.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260169|gb|EGA43792.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265288|gb|EGA48785.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270510|gb|EGA53956.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326625777|gb|EGE32122.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326629490|gb|EGE35833.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332990888|gb|AEF09871.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ +A  I+  L  E + V     G +G+E      +D I++D  + ++ G  
Sbjct: 4   QILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R+     P+ ++S  S+  DKV GLQ  ADDY++KPF+ EEL AR+R+ +RR + 
Sbjct: 64  MIEHIRLQS-DVPIIMISAKSNESDKVTGLQD-ADDYLAKPFSLEELKARVRSQIRRWQR 121

Query: 122 H-----AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +     A+ ++  V G L ++   + V ++   + LT KE+ ++++L+       TKE  
Sbjct: 122 YNRVFTAEDMVSYVRG-LKIDWVKECVYIEEVEVSLTQKEFALLKVLAQNPFELFTKEAL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             H++   +  +   + V I  LR+KL +      YI+TVWG+GY
Sbjct: 181 YTHVWHQVELDQTHTVTVHIKALREKLQDPVKSPKYIQTVWGKGY 225


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ + +L    +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R  +   PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVR-KESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +    I  G L +  D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+ +A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGY 224


>gi|91779051|ref|YP_554259.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691711|gb|ABE34909.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 223

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ S+   L S    V     GE    + +  ++  +ILD+GL  + G 
Sbjct: 1   MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV +L+   S+E++VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G        G L  +   +   + G  + LT +E  ++E+L LR    + K+     ++ 
Sbjct: 121 GQEPLHAQCGTLLYDSVDRGFTLDGELLALTPRERSVLEVLILRNGRAINKDTLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL +++ G   I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRKKLEHSSVG---IVTLRGLGYLL 218


>gi|53725411|ref|YP_103471.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121601439|ref|YP_992428.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124384159|ref|YP_001026769.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126451092|ref|YP_001079946.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|126455264|ref|YP_001065533.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|134283888|ref|ZP_01770584.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|226195325|ref|ZP_03790914.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811540|ref|YP_002895991.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238562097|ref|ZP_04609887.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242317232|ref|ZP_04816248.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|251767304|ref|ZP_02266740.2| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254181223|ref|ZP_04887820.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|254195197|ref|ZP_04901626.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|254260507|ref|ZP_04951561.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
 gi|254359896|ref|ZP_04976166.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|52428834|gb|AAU49427.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121230249|gb|ABM52767.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124292179|gb|ABN01448.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126228906|gb|ABN92446.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|126243962|gb|ABO07055.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|134244677|gb|EBA44775.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|148029136|gb|EDK87041.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|169651945|gb|EDS84638.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|184211761|gb|EDU08804.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|225932527|gb|EEH28525.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503786|gb|ACQ96104.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238523332|gb|EEP86771.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242140471|gb|EES26873.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|243063242|gb|EES45428.1| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254219196|gb|EET08580.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
          Length = 234

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 10  VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 70  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQA 128

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 129 GAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 189 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 230


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +EL L  E + V     G  G+E+ +   FD IILD+ L  + G E
Sbjct: 5   KILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+    + DKV GL  GA+DYI+KPF  EEL+ARIR+ + +++ 
Sbjct: 65  VLRKIR-HNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSAL-KTKN 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H  S    + +G L +++D   V      + LT KE+ ++       +  LT++  L  +
Sbjct: 123 HGISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I+DV+I  LR K+ +    K  I T+ G GY+L+
Sbjct: 183 WGYDYMGDTNIVDVYIRYLRSKIDDKY-NKKIIYTIRGVGYLLK 225


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y+ D +ILDL L    G E
Sbjct: 31  KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKDGLE 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 91  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++  A   I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 210 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGYYVKQPTEE 265


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L+ + F+V                 +D I+LDL L    G  
Sbjct: 8   RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLPGEDGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A+   PV +L+      D++ GL+ GADDY++KPFN  ELVARI+A++RR   
Sbjct: 68  ICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQPH 127

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G + VNL  + +   G  I LT  E+ ++++L       L+++  
Sbjct: 128 TLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDKL 187

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  L  GR+     + IDV + +LRK + +      YI+TVWG GYV 
Sbjct: 188 M-ELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 234


>gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   + ++L  + +++     G++ + L     F  I+LD+ +  + GF 
Sbjct: 9   KILIADDDAEILDILSILLSGDGYDITTASNGDEVVSLAD-ESFSLIVLDVNMPKLSGFL 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K   P+  L+  +   DK  G  +G DDY+SKPF+  E + R++A++RR   
Sbjct: 68  ACSEIR-KKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQ 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +       +  +++  D+ +N D KTV V G  I LT  EY ++ELL+L +    + E  
Sbjct: 127 YGSIPTQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENI 186

Query: 175 LNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++ D         I V I  LRKK+        YI+T WGRGY +
Sbjct: 187 YSSIWNDSYIGASDNAIMVHIKNLRKKIEKNPKEPKYIKTSWGRGYYI 234


>gi|157147296|ref|YP_001454615.1| DNA-binding transcriptional regulator CpxR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084501|gb|ABV14179.1| hypothetical protein CKO_03088 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|149278733|ref|ZP_01884868.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149230352|gb|EDM35736.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K LA  I   L  E + +          E      +D I+LDLGL D  GF
Sbjct: 1   MNILIIEDEKNLALEISAFLSKEGYRIDHAWRKASAEEKIFVNTYDFILLDLGLPDGDGF 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +L+ L+ +      V IL+    +ED+++GL+ GADDY+ KPF+  EL+AR+ AI+RR 
Sbjct: 61  NLLQQLKSIGGREDAVIILTARGEVEDRIKGLEEGADDYLPKPFSLTELLARMHAIIRRK 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +      +++    V  +  +I+LTGKE+++   L L KN  +++     H++
Sbjct: 121 HKLELNEVNVNGFMLDIRNHKVSFEHQKINLTGKEFEIFNYLVLNKNRVISRLNLTEHVW 180

Query: 180 DGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   +   +DV +  LRKKLS A     + ETV   GY
Sbjct: 181 GDILEVNSDSNFVDVHVKNLRKKLS-AHAPIEWFETVRSIGY 221


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF V
Sbjct: 17  LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFTV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+   
Sbjct: 77  ARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAI 136

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H++
Sbjct: 137 ENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKN-----YIETVWGRGYVLRE 223
           +     +  I++ +I  LR+K+    G         I+T  G GY+LRE
Sbjct: 197 EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLRE 245


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 128/229 (55%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     G++ ++L     +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLDGFE 63

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           V +++R  + ST P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR S
Sbjct: 64  VCQSIR--EFSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAS 121

Query: 120 RGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            G A +        +I  GDL ++   + + + G   +LT KE+ M+ LL        ++
Sbjct: 122 IGMAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSR 181

Query: 172 EMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  L+ ++ G D P + + +DV + +LR+K+        Y+ T WG GY
Sbjct: 182 EDLLHTIW-GTDYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229


>gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
 gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM
           16047]
          Length = 221

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 117/203 (57%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  L   +   +K   ++V   D G   +E  K   +D IILD+ +  + G 
Sbjct: 1   MRILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHAKESSYDVIILDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T V +L+  + ++D+V GL SGADDYI+KPF+ +EL+AR+R+  RR+ 
Sbjct: 61  TALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLRSKERRAD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  GDLS+N+  + + +  + I L+G E Q++    L +   L+ +  L+H++ 
Sbjct: 121 DYTPNELKVGDLSLNVSEQEL-ISHNSIRLSGIETQLMNYFLLNEGKELSTDELLSHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
             ++    ++ +++  LR+KL +
Sbjct: 180 NDEDANADVVWIYVSYLRQKLQS 202


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ AL+  +   L++E F V   + G++          D ++LD  L  + G E
Sbjct: 25  RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   P+ +L+      +K+RGL +GADDYI KPF+  EL+AR+RA++RRS
Sbjct: 85  ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRS 144

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      L+  GDLS++ +   V      +HL   E+++++ L  R     ++   L+ +
Sbjct: 145 RPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDGV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + +DV + +LRK LS     ++ I TV G GY   E+
Sbjct: 205 WGEAAEIDERTVDVHVGRLRKALS-IGEEQDPIRTVRGAGYSFDEH 249


>gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +I++ L+ E  NV  +  G + +E+    +   ++LD+ +  + G   
Sbjct: 8   VLVVDDEKEIRDAIDIYLRGEGINVIKSGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R ++ + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 68  CLKIRESR-NIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +R + Q LIV  DL+++   K V ++G  I LT  EY+++ LL+       + +     
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 178 LYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +EP  K    + V I ++R+K+   +    YI+ VWG GY
Sbjct: 187 VW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGY 228


>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 241

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQENPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIA 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + +I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPAQQEEMIEFGEFSLNLATREMFHGDESIALTSGEFAVLKVLVNHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ +  +I+  L+  ++ V     G + +++    +FD I+LD+ +  I G E
Sbjct: 5   KILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMMN-NDFDLIVLDIMMEGIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R  ++  P+  +S  +  EDKV+ L  G DDYI+KPF+ +EL ARI   +RR   
Sbjct: 64  LCRLIR-ERVDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLRREER 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++  T KEY++++LL L +    +KE     +
Sbjct: 123 IRSNERYLLSSKNMTIDLLANEVFCKGKKLPFTKKEYEIVKLLMLNQKIVFSKERIFERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    E ++  +   I  +RKK+       +YI+T++G GY
Sbjct: 183 WGIDSESQLDTVAESIKNIRKKIKAVDPDTSYIQTLYGLGY 223


>gi|224825186|ref|ZP_03698292.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224602857|gb|EEG09034.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD  +   +   L++E F V+  D G  G+      + + +I+DLGL D+ G E
Sbjct: 5   RLLIIEDDPQIRRFLRAALEAEGFAVFEADSGGRGLIEAATRQPELVIVDLGLPDMDGRE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR    + P+ +LS     E+KV  L  GADDY+ KPF   EL+AR+RA +RR   
Sbjct: 65  VIRELR-GWSAVPIVVLSARHQEEEKVAALDQGADDYLVKPFGVPELLARLRAQLRRGAT 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  QS I  G + V+L  + V   G  +HLT  EY+++  L   +   LT    L   +
Sbjct: 124 AAAGQSRISFGQVCVDLPQRRVSRAGTEVHLTPVEYRLLSALIKGQGRVLTHRQLLLDTW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL +      ++ T  G GY L+
Sbjct: 184 GPDYVERPHYLRIYMGHLRQKLEDDPSQPKHLLTELGVGYRLQ 226


>gi|188587672|ref|YP_001919525.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188497953|gb|ACD51089.1| DNA-binding response regulator [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+ED+  ++++I +    E F++     G D I+    Y +D +ILDL L ++ G 
Sbjct: 2   ISILLVEDNIEISNNI-VEYFGEEFDIRAVYDGSDAIQYLNTYSYDVVILDLMLPEVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
            VL  +    ++T V IL+    + DK++    GA+DY++KPF  EEL ARI AI++   
Sbjct: 61  SVLSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    +++   ++ +++ AKTV +    + L  K Y+++E L + K   L KE   +++ 
Sbjct: 121 KIKKSNILEFKNMQIDMKAKTVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNIC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +II+V+I +LRK+LS     + Y+ T  G GY+L E+
Sbjct: 181 GYNSDAATEIIEVYISRLRKQLSKYNYDR-YLVTKRGMGYLLDES 224


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR+   + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR RG 
Sbjct: 64  CKELRLVS-NVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR-RGD 121

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            ++          ++  G + +++D+ TV V G  +++  KE+ ++E L       LT+ 
Sbjct: 122 TEAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGY 228


>gi|332761097|gb|EGJ91384.1| transcriptional regulatory protein phoP [Shigella flexneri K-671]
          Length = 263

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 6/204 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ ++     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQIQDAGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+   S +DKV  L +GADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + +    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKL 201
           LY   +  E   IDV + +LRKK 
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKF 201


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G++ +++     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V+G  I LT KEY ++  L+   +    +E
Sbjct: 124 QTSEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGY 231


>gi|227514441|ref|ZP_03944490.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087191|gb|EEI22503.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 250

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 133/243 (54%), Gaps = 19/243 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           M+IL+IED++++   + +  K E ++      GE+ +E  KF     +++ ++LDL L  
Sbjct: 11  MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVE--KFAAEADDWEMVLLDLNLPK 68

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 69  KDGMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALR 128

Query: 117 RRSR-----GHAQSLIVTGDLSVN---LDAKTVE--VQGHRI-HLTGKEYQMIELLSLRK 165
           RR +       A+ +    D+  +   L++KT E  + G+ I +LT KE+ +++ L+ + 
Sbjct: 129 RRVQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKP 188

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 189 KQVFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSE 246

Query: 226 KDE 228
            D+
Sbjct: 247 ADD 249


>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
 gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
          Length = 248

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+LL++DD  L   +   L+ + F V  V D       L + + FD I+LDL L    G 
Sbjct: 11  RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREH-FDLIVLDLMLPGEDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A+   P+ +L+      D++ GL+ GADDY+ KPFN  ELVARI+A++RR  
Sbjct: 70  AICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQ- 128

Query: 121 GHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            H+          ++V G + VNL  + +   G  I LT  E+ ++++L       L+++
Sbjct: 129 PHSLPGAPTPEDEIVVFGRVRVNLGTRALTRDGEEIQLTTGEFSLLKVLLQHPRQPLSRD 188

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  L  GR+     + IDV + +LRK + +      YI+TVWG GYV 
Sbjct: 189 KLME-LARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 237


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  + + + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR LR A  S PV +L+     ED+++GL+ GADDYI KPF+  ELV+RIRA++RR    
Sbjct: 69  LRRLRQAS-SVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127

Query: 120 RGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D L ++   + V V G R++L   EY+++  L       +T E  L+ +
Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + ++I  LR+K+        YI T  G GY
Sbjct: 188 WGPEYRDETHYLRLYITYLRQKIEEDPANPKYILTERGIGY 228


>gi|53717560|ref|YP_105537.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53721677|ref|YP_110662.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67639687|ref|ZP_00438526.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819632|ref|YP_337359.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124383153|ref|YP_001023876.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126447427|ref|YP_001078753.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126458475|ref|YP_001074902.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278880|ref|ZP_01765593.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722822|ref|ZP_02406058.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167741803|ref|ZP_02414577.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167818985|ref|ZP_02450665.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167827365|ref|ZP_02458836.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167848846|ref|ZP_02474354.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167897444|ref|ZP_02484846.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167905799|ref|ZP_02493004.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167914106|ref|ZP_02501197.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167922015|ref|ZP_02509106.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217418866|ref|ZP_03450373.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194866|ref|ZP_03790457.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237510584|ref|ZP_04523299.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242313496|ref|ZP_04812513.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254179219|ref|ZP_04885871.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254183005|ref|ZP_04889597.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189661|ref|ZP_04896170.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192765|ref|ZP_04899200.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204353|ref|ZP_04910710.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209237|ref|ZP_04915584.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264557|ref|ZP_04955422.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299935|ref|ZP_04967381.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254356523|ref|ZP_04972798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212091|emb|CAH38100.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52423530|gb|AAU47100.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584105|gb|ABA53579.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124291173|gb|ABN00443.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126232243|gb|ABN95656.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240281|gb|ABO03393.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134249299|gb|EBA49380.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147744776|gb|EDK51859.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750460|gb|EDK57530.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148025550|gb|EDK83673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157810251|gb|EDO87421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937338|gb|EDO93008.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694546|gb|EDP84556.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169649519|gb|EDS82212.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213538|gb|EDU10581.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398170|gb|EEC38185.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225932671|gb|EEH28667.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|235002789|gb|EEP52213.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238520280|gb|EEP83741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136735|gb|EES23138.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215559|gb|EET04944.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|300933852|ref|ZP_07149108.1| two-component system response regulator KdpE [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 24/234 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ALA+++ + L++  ++V V       I+L   +   A++LDLGL D+ G +
Sbjct: 5   KILMVEDDAALANAVLVTLRARGYDVKVATTASAAIKLASEWHPQALLLDLGLPDMSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV------------ 109
           VLRALR +    PV ++S       K+  L  GADDY++KPF+  EL+            
Sbjct: 65  VLRALR-SWSDVPVLVVSARHDEAGKINALDEGADDYVTKPFSVGELLARLRAALRRAPN 123

Query: 110 --ARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
             A    +V+ S G  Q          +L  K V V GH +HLT +E+ ++E +   +  
Sbjct: 124 EEAPETPVVKTSDGRVQ---------FDLPEKRVTVDGHEVHLTPREWGIVEHMIRHQGR 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +TK   L  ++    + E   + V++ +LR KL        Y  T  G GY L
Sbjct: 175 LVTKVELLQSVWGASYKKETNYLRVYMSQLRSKLEQDPANPQYFTTELGVGYRL 228


>gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15]
          Length = 239

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 123/219 (56%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +        + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGFSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +   +DV I +LR K+ +    K  I T+ G GY
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGY 232


>gi|260771913|ref|ZP_05880831.1| DNA-binding response regulator KdpE [Vibrio metschnikovii CIP
           69.14]
 gi|260613205|gb|EEX38406.1| DNA-binding response regulator KdpE [Vibrio metschnikovii CIP
           69.14]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++I+D+  +   + + L SE + +   + G  GI +   ++ + ++LDLGL D+ G 
Sbjct: 3   MKIVVIDDEAQIRRMLRVALGSEGYEIIEAENGNIGISMVARHQPNLVVLDLGLPDLDGQ 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL+ LR +  S P+ +LS  +   +KV+ L +GA DY++KPF+  EL+ARIR  +R + 
Sbjct: 63  DVLKELR-SWSSIPIIVLSVRNKDNEKVKALDNGAQDYVTKPFSVVELLARIRVCLRDNI 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   Q+++  G L ++L  + V      + LT KEY ++ +L+   N  +T+   L  ++
Sbjct: 122 KPEQQAVLDDGSLKIDLTRRVVMFDNELVELTPKEYGVLSILASSPNCVITQTQLLREIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +   + + I  LR+KL + +    Y+ T  G GY
Sbjct: 182 GPGHSQDTHYLRIVISHLRQKLGDESLNPKYLRTEPGVGY 221


>gi|167580382|ref|ZP_02373256.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           TXDOH]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 248

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDY-SQPLLKTIRGAGYMIKDEG 248


>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 226

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++L L+ E ++VY      + ++    Y  D ++LD+ +  + G +
Sbjct: 6   KILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKLS-YSPDIVLLDINMDGMNGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           +  ++R   IS P+  L+   S +DK+ GL +G DDYI+KPF+  EL+ARI A +RR  R
Sbjct: 65  LCVSIR-DFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRREQR 123

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H ++    + DL ++   +++ ++GH+I L+ KE+++I+LLS        +E    +++
Sbjct: 124 SHNKTKSKFSEDLIIDYSDRSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREKIYENIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +  +I   I K+R K  N    K YI TVWG GY
Sbjct: 184 GIDGNGDSVVIKEHIRKIRLKF-NEFTDKGYITTVWGVGY 222


>gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
 gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N+ V     GE GIE+     +D ++LDL L    G E
Sbjct: 6   KILIIEDDKNIQRLLALELRHKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V + LR     TP+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R +  
Sbjct: 66  VCQELRKLA-DTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +   +  ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 125 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+ + +    YI T+ G GY+ +
Sbjct: 185 YDFDGEEKIVDVYINSLRKKIDSKS---KYIHTIRGFGYIFQ 223


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|154483201|ref|ZP_02025649.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
           27560]
 gi|149736009|gb|EDM51895.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
           27560]
          Length = 233

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     +  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLLMM 124

Query: 119 -SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                A++++ V G L V+  A    +    +HLT  EY+++ LL+      LT      
Sbjct: 125 QKVSPAEAVVFVNGKLRVDYAAGCAYLNEEELHLTPIEYKLLCLLTRNIGKVLTHTFLTQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + ++  + VF+  LRKK+        YI+T  G GY
Sbjct: 185 SIWGSSWDNDIASLRVFMATLRKKIEKEPNSPQYIQTHIGVGY 227


>gi|108760068|ref|YP_634130.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622]
 gi|108463948|gb|ABF89133.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622]
          Length = 231

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 113/219 (51%), Gaps = 5/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  I   LK   F V +   G   +E+ +    D ++LDL L    GFE
Sbjct: 8   RILVVEDDAPIAAGIVRGLKLAGFQVVLATDGVLALEMAEREHPDLVVLDLNLPGQDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L A R  ++  PV +L+    +E ++R    GA DY+ KPF  EELVARIRA +     
Sbjct: 68  LLEAWRF-RLRVPVIVLTARQELEARLRSFGLGAVDYLPKPFWMEELVARIRARLLLQEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++   D+S++LDA+    +G   +  T  E+ ++  L+ R    LT+     H   
Sbjct: 127 RPRRVLHWDDVSLDLDAREASREGTGALPFTRHEFDVLAYLAERPGRALTRAQIAQHALP 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E + + +D  I ++RKKL  A      I+T WG GY
Sbjct: 187 PSEERDDRTVDSHIARIRKKLGPAGA---RIQTSWGIGY 222


>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 236

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++ ++    V +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEMQ-SRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GDL ++   + V ++  +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEE 233


>gi|256042377|ref|XP_002569366.1| sensor histidine kinase/response regulator [Schistosoma mansoni]
 gi|227277727|emb|CAY18622.1| two-component system sensor histidine kinase/response regulator
           (intestinal bacteria-bacteroides thetaiotaomicron),
           putative [Schistosoma mansoni]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L+  +   L+S  + V        G EL      DA++LDL L D  G ++
Sbjct: 8   ILLIDDDMRLSAMVADYLRSHGYQVSTAASLTAGRELLGRQAMDALVLDLMLPDGDGLDL 67

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR +    S PV +LS      D++ GL+ GADDY+ KPF   ELVAR++ ++RR R
Sbjct: 68  CRELRASPRTRSLPVLMLSARGEPTDRIVGLEVGADDYLPKPFEPRELVARLQTVLRRRR 127

Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + TG      LS++   ++V+  G  + LTG E+ ++ LL+       +++  L
Sbjct: 128 APGPG-VATGSLEFEGLSIDAARRSVQRHGEVVELTGTEFDLLHLLAREPGRVFSRDDIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L     E   + +D+ + +LRKKL       + I+T+   GY L
Sbjct: 187 NQLRGHEAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNVGYSL 228


>gi|227497827|ref|ZP_03928012.1| two-component system regulatory protein [Actinomyces urogenitalis
           DSM 15434]
 gi|226832749|gb|EEH65132.1| two-component system regulatory protein [Actinomyces urogenitalis
           DSM 15434]
          Length = 219

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L+ E+  V V   GED ++     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEVFLADAVARGLRHESMAVDVVYDGEDALDRISMTDYDVVVLDRDLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + L +    T V +L+   +++DKV GL+ GADDY+ KPF   ELVARIRA+ RR  
Sbjct: 61  DVCKELTLTCPGTRVLMLTAARTLDDKVSGLEMGADDYLVKPFEFPELVARIRALERRIA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++    +S++     V   G  + L+ KE+ ++ +L       L+ E  L   +D
Sbjct: 121 PARQPVLEGYGVSLDPFRHEVTRDGRFVRLSPKEFAVLAVLMEADGGVLSGETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               P    I V I  LR++L    G    I+TV GRGY
Sbjct: 181 ENANPLTNAIRVTISHLRRRL----GEPWVIQTVPGRGY 215


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++  G+  ++  A ++   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL         I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   ++  L++  + V  +  G DG    K ++ D I+LD  L +I G +
Sbjct: 3   KILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGID 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ +R  +     PV +L+  +  EDK+ GL+ GADDYI+KPF+ +E++ARI +++RR 
Sbjct: 63  LLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRY 122

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  +     ++   D+ VN++   V   G  I LT KE+Q+++LL   K   LT+   L+
Sbjct: 123 KYTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E + +DV I  LRKK+ +       IETV G GY ++
Sbjct: 183 KIWGYDYYGETRTLDVHIRHLRKKIGD--NDSKLIETVRGVGYKIK 226


>gi|146299380|ref|YP_001193971.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146153798|gb|ABQ04652.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED+K LA  +   L    +   + +   D +E     ++DA++LDLGL D  GF
Sbjct: 5   MNVLIVEDNKELAVEVYDFLSKAGYICKIANNCADALEEFGSNDYDAMLLDLGLPDGDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K    V +L+    ++D++ GL  GADDY++KPF   EL AR+ A++RR  
Sbjct: 65  EVLQTIRKTKSKIAVIVLTARGELDDRINGLHLGADDYLTKPFALTELAARLFAVIRRIH 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +      + L    V      + LT KE+ + + L L KN  +T+     H++ 
Sbjct: 125 GFTLNNLSIHGFLLQLQDYKVSFNEVPLSLTKKEFDIFQYLVLNKNRVITRLQLTEHIWG 184

Query: 181 GRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E   +   IDV +  LRKKL       ++ ETV   GY + E
Sbjct: 185 DILEINSDSNFIDVHVRNLRKKLDKHT-SIDWFETVRNVGYRINE 228


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 18/229 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK-------EYQMIELLSLRKNTTLTKEM 173
             +  L +  +  + LD +T     H++H  G+       E++++     +     ++E 
Sbjct: 129 PSSVGLTLEFE-DIRLDPET-----HKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQ 182

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++ GRD   + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 183 LLDRVW-GRDIYVDSRTVDVHVGRLRKALC-VHGGEDPVRTVRGAGYAL 229


>gi|315179762|gb|ADT86676.1| two-component response regulator [Vibrio furnissii NCTC 11218]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ LL+EDD  LA ++   +  E  +      G+ G  L     +D I+LDL L  I G 
Sbjct: 2   LKALLVEDDLDLATALVDYMSLEAIDCDFAADGQVGYNLIMANRYDVIVLDLNLPKIEGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R   I TPV +L+   +++DK++G   GADDY+ KPF  EEL+AR++ + +R  
Sbjct: 62  VVCERIRERGIETPVLMLTARDTLDDKLQGFSHGADDYLVKPFAMEELMARVQVLAKRRS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L V  DL +++  + V   G  I L+    +++ELL     + +++E    +++ 
Sbjct: 122 GQVSKLRV-ADLVLDMAQRKVTRAGQEIKLSPIAIKILELLMREYPSGVSREKIALNVW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G D+P+   + V +  LRK++ + AG +  I T+ G G+ ++    DET 
Sbjct: 180 GDDQPDSNSLKVHMFNLRKQI-DKAGLEPLIHTLPGYGFAIQRQGNDETA 228


>gi|239939366|ref|ZP_04691303.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239985844|ref|ZP_04706508.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291442799|ref|ZP_06582189.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
 gi|291345746|gb|EFE72650.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
          Length = 219

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 11/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDIP 58
           RIL+ ED+  +A  +E  L+      YVT +  DG+   E  +  +FD +ILDLGL    
Sbjct: 3   RILIAEDEVRIASFVEKGLRRSG---YVTRVVADGVAAYEHARGRDFDLLILDLGLPGDD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VLR LR A+I+ PV IL+    + D V GL+SGADDY+ KPF  +EL+AR+R  +RR
Sbjct: 60  GLAVLRKLRKARITLPVVILTARDGVSDIVAGLESGADDYMVKPFAFDELLARVRLRLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  L+  GDL ++L  +  +       L+ +E+ + E+L    +  LT+E  L+ +
Sbjct: 120 EEPPENFLLRVGDLLLDLRTRRAQAGERVTDLSAREFALAEILMRNPDRVLTREQLLSQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV+I  LR+K+     G   +ETV G GY LR
Sbjct: 180 WGFDYDPGSNIVDVYIRYLRRKI-----GAERVETVRGVGYRLR 218


>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 256

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 15/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  +   L+ E   V V   GE  ++L +  + D +ILD+ L  + G +
Sbjct: 4   RVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLSGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TPV  LS     E++V GL+ G DDY+ KPF+  EL+ R++ ++ R   
Sbjct: 64  VCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRLEW 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRI---------------HLTGKEYQMIELLSLRKN 166
             ++     +  V +    +   GH++                L  +E  ++ LL+ R  
Sbjct: 124 GQEAYFRRAERGVEVAPAGLSFGGHQVDFRTWNATLADGRVEPLGEREIGILRLLAERAG 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++++  L+ ++ G   P  + +D FI +LRK          Y+ TVWG GY
Sbjct: 184 EVVSRDEILDRVWGGDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGY 236


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-------KFYEFDAIILDLGL 54
           RIL++ED+  +   + L L+ E ++V     G   + L        +  +F  +ILDL L
Sbjct: 20  RILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R +R    S P+ ILS  +S  D+V GL+ GADDY++KPF+  EL+AR RA
Sbjct: 80  PQVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRA 139

Query: 115 IVRRSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R ++     T    D+++  +   V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGY 247


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+ 
Sbjct: 60  WQVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQH 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 119 VPVFTRLTING-LDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 178 GINFDSETNTVDVAIRRLRAKVDDPF-EKKLIMTVQGMGYRLQ 219


>gi|49082112|gb|AAT50456.1| PA0929 [synthetic construct]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGGYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQLRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 129 ERGGAPGRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 235


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 15/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F+V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ R +R  KIS TPV +L+    +ED+++GL  GADDYI KPF+  E+VARI+A++RR+
Sbjct: 61  EICREIR--KISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRT 118

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
                  A S+     L+++     V +Q   I LT  E++++  L+       ++    
Sbjct: 119 HIETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLV 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   H + G DE   ++ID  I KLR+KL         I TV+G GY
Sbjct: 179 QIVQGHDFGG-DE---RVIDAHIKKLRQKLERVPSDPKIILTVYGVGY 222


>gi|15596126|ref|NP_249620.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100385|ref|ZP_01364303.1| hypothetical protein PaerPA_01001410 [Pseudomonas aeruginosa PACS2]
 gi|218893102|ref|YP_002441971.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|254245213|ref|ZP_04938535.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|9946833|gb|AAG04318.1|AE004527_5 two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|126198591|gb|EAZ62654.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|218773330|emb|CAW29142.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
          Length = 239

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGGYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQLRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 129 ERGGAPGRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 235


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 38  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 98  VCRRVQ-AHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 156

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 157 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 216

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 217 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 263


>gi|260469831|ref|ZP_05813985.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259028402|gb|EEW29724.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL---GEDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDD   A  I   L       +V DL   G D +       +D I+ D  +  +
Sbjct: 1   MRLLLVEDDHRTADYIVRGLTEAG---HVCDLLRNGHDALFAATSGTYDVIVADRMIPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +++A+R A + TP   L+ +  I+D+V GL++G DDY+ KPF   EL+ARI A+ R
Sbjct: 58  DGLSLVKAIRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGR 117

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     Q  ++   DL ++L  + V  QG  I L  +E+ ++E+L   +   +T+ M L 
Sbjct: 118 RPAAQEQKTVLRVADLEMDLIMRRVVRQGRPIDLQPREFSLLEVLMRGEGRVITRTMLLE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D   +P   +++  I +LR K+         I TV   GY L
Sbjct: 178 RVWDFHFDPRTSVVETHISRLRAKIDKPF-ETQLIHTVRNTGYSL 221


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   + + L+ E +++  +  GE  ++L    ++D I+LD+ L  + G EV
Sbjct: 7   ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K +TPV +L+      ++V G + GADDY+ KPF+  E++ R++AI+RRS   
Sbjct: 67  CARLRQFK-TTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSAT 125

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E  
Sbjct: 126 AFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREEL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
           L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L
Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKL 233


>gi|145222854|ref|YP_001133532.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315443319|ref|YP_004076198.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145215340|gb|ABP44744.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261622|gb|ADT98363.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 249

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E +++     G   I L +    D ++LD+ L D+ G 
Sbjct: 24  IRVLVVDDEAVLAELMSMALRYEGWDISTAGDGATAIALARQNPPDVVVLDVMLPDMSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           EVLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 84  EVLRTLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 143

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           V  + G A+  +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L
Sbjct: 144 VATATGGAK--LVVGDLVLDEDSHEVTRGGDLITLTATEFELLRFMMRNARCVLSKAQIL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         I+++++  LRKK+ +  G +  I T+ G GYVL+
Sbjct: 202 DRVWSYDFGGRSNIVELYVSYLRKKIDS--GREPMIHTLRGAGYVLK 246


>gi|148259863|ref|YP_001233990.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326403209|ref|YP_004283290.1| two component transcriptional regulator [Acidiphilium multivorum
           AIU301]
 gi|146401544|gb|ABQ30071.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325050070|dbj|BAJ80408.1| two component transcriptional regulator [Acidiphilium multivorum
           AIU301]
          Length = 231

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++DD  L   ++  L    F V V +      E  +  + D ++LD+ + +  G E+
Sbjct: 8   ILLVDDDARLRALMQRYLVENGFRVTVAESAAAARETLRVVDPDMMVLDVMMPEETGLEL 67

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +LR  +    P+ +L+   + ED++ G ++GADDY+ KPF+  EL+ RIRA++RR+  
Sbjct: 68  IESLRADRAPDLPILLLTARGAPEDRIAGFEAGADDYLGKPFDPRELLLRIRAMLRRAAP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            AQ+       + + D    E+   R  + LTG E  ++ +L+ R +  L++E     L 
Sbjct: 128 PAQAAGPVRLGAASFDPARGELSTERGPVRLTGGEASLLAVLAARAHEVLSREALAEIL- 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G DE   + IDV + +LR+K+        Y++TV GRGYVL+  
Sbjct: 187 -GMDEAGERAIDVQVTRLRRKIEPDPREPRYLQTVRGRGYVLKPG 230


>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 244

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +ILL++DD+ L   +   L+ E F V     G    E L +  EFD ++LD+ +  + G 
Sbjct: 7   KILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VLR++R AK   P+ +L+G     D++ GL+ GADDY+ KP N  EL ARI+AI+RR+ 
Sbjct: 67  DVLRSVR-AKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 120 ----RGHAQSLIVTGDL-SVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                G A   IV   L  + LD   +T  V    + LT  E+  + LL  R   T+TK+
Sbjct: 126 NSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITKQ 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +   E   + +DV I ++R+KLS + G  + I+++ G GY +
Sbjct: 186 DMTQEVLNRPLEAYDRAMDVHISRIRQKLS-SQGINDVIKSIRGVGYQM 233


>gi|53718811|ref|YP_107797.1| two-component system, regulatory protein KdpE [Burkholderia
           pseudomallei K96243]
 gi|76811337|ref|YP_332807.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
           1710b]
 gi|167718797|ref|ZP_02402033.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei DM98]
 gi|167814991|ref|ZP_02446671.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 91]
 gi|167823404|ref|ZP_02454875.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 9]
 gi|167844953|ref|ZP_02470461.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei B7210]
 gi|167893496|ref|ZP_02480898.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 7894]
 gi|167901949|ref|ZP_02489154.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910181|ref|ZP_02497272.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 112]
 gi|167918213|ref|ZP_02505304.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei BCC215]
 gi|254175503|ref|ZP_04882163.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           10399]
 gi|254207477|ref|ZP_04913827.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
 gi|284159939|ref|YP_001058295.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 668]
 gi|288553010|ref|ZP_03450883.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 576]
 gi|52209225|emb|CAH35170.1| two-component system, regulatory protein KdpE [Burkholderia
           pseudomallei K96243]
 gi|76580790|gb|ABA50265.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
           1710b]
 gi|147751371|gb|EDK58438.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
 gi|160696547|gb|EDP86517.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           10399]
 gi|283775091|gb|ABN83417.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 668]
 gi|288279717|gb|EEC36697.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 576]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQA 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|116490563|ref|YP_810107.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|116091288|gb|ABJ56442.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPGF 60
           IL+IED+ A+   ++  LK E++ V     GE G+ + +      + ++LD  L    G 
Sbjct: 6   ILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +++  S I DKV  L SGADDYI+KPF  EEL+AR+R  +R   
Sbjct: 66  EVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQN 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L    +L ++LDA  V   G  I LT +E+Q++  L    + TLT++  L++++ 
Sbjct: 126 KPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENADKTLTRDDLLDNVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +    DV+I  LR+K+ +    K  I TV   GYVLR
Sbjct: 186 VDFNGQYNTADVYIRYLRQKIDDHFYPK-LIHTVRSVGYVLR 226


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++ED+  L   ++  L+SE ++V     GE+   L     +D  ILD  +  I G E
Sbjct: 4   KIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKISGIE 63

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR      + P+ +L+      D+VRGL +GADDY++KPF+ +EL+ARI+A++RR+
Sbjct: 64  LCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRRA 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S ++V+G++ ++  A  V      + L   EY+M+E+        L++   L+ +
Sbjct: 124 APERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E + + +DV I +LRK L       + I TV G GYV 
Sbjct: 184 WGQSSEVDERTVDVHIGRLRKSLIR-GNESDPIRTVRGAGYVF 225


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  IVKEIRKTS-HTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|15888321|ref|NP_354002.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155989|gb|AAK86787.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 252

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD +A A+  +   ++     + +D GE G+ +     +D +++D  L    G
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREAGIVADHASD-GESGLFMGCENAYDVLVIDRMLPRRDG 86

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+ARI  + RR 
Sbjct: 87  LSVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRK 146

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 147 GKPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENV 206

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR K+      K  ++T+ G GY++++  
Sbjct: 207 WDYHFDPQTNVIDVHVSRLRSKIEKDF-EKPLLKTIRGAGYMMKDEG 252


>gi|17548121|ref|NP_521523.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17430428|emb|CAD16901.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 221

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  +   +E  L+   + V +V D G   +++     +D ++LDLGL    G
Sbjct: 1   MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRD-GRTAVDVSAHQHYDLLLLDLGLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR      PV IL+   +++++VRGL  GADDY+ KPF   EL+AR+RA++RR 
Sbjct: 60  HAVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A  ++  G LS  LD  T EV+   G  + L+G+E+ +++ L LR    L++     
Sbjct: 120 GGAASPVLSNGVLS--LDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +Y    E     ++  I  LRKKL     G   I+ V G G+++
Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GAESIKNVRGVGWMV 217


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+ +++  +EL    E  N      G +G E  K    D +ILD  L  + G 
Sbjct: 1   MRILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   S  D+V G + GADDY++KPF+   L+ARI+A+ RR +
Sbjct: 61  ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  LI T   +VN + + +   G  +  LT KE+ ++           ++E  L  
Sbjct: 121 KPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++  +   + + +DV I +LRKK+    GG     TVWG GY   E+ 
Sbjct: 181 VWGYQFYGDERTVDVHIKRLRKKID---GGDKLFHTVWGVGYKFEEHT 225


>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
 gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   ++L L+S  + V + D   D I        D  I D+ L  + G  
Sbjct: 4   RIYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVMLPQMDGIT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS   S  DK+ GL SG+DDY++KPF   EL AR+R ++RR + 
Sbjct: 64  AVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQP 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++S I T  LS++     V+     I LT KEYQ++  L   K   + ++  LN+++  
Sbjct: 124 KSKS-IQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY--VLRENAKD 227
               E + +DV I  LRKKL +   G+ YI+TV   GY  V +E+  D
Sbjct: 183 DFIGESRALDVHIRSLRKKLDD--NGEKYIKTVRSVGYRFVEKEDTHD 228


>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59
           +R+LL++D+  L   + + L+ E + V + + G  G I L      D ++LD  L D  G
Sbjct: 8   LRLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R +R   +S PV +L+G   ++DKV  L +G DDY+ KPF+ EEL+AR+RA+ RRS
Sbjct: 68  LDICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRS 127

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  GDL +N     V      I L+ KEYQ++  L    N   ++   
Sbjct: 128 NALQPQASEPDVLRIGDLELNQANHDVRRGSRSIQLSNKEYQLLVFLMRSPNKVQSRLEI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++      +  ++DV+I  LR+K+ +    K  I TV G G+++R
Sbjct: 188 LHGVWGESFYGDDNLLDVYIRYLRQKVESPDEPK-LIHTVRGVGFMMR 234


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++       L+   F V + D G +G+EL +    D +ILDL L  + G EV
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +    + +L+  S   D+V GL+ GADDY+ KPF+  ELVARI AI+RR R  
Sbjct: 65  AARLR-QESDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRSA 123

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  T     L ++ + + V V    I LT  E+ ++  L+ R    L++E  L+ ++
Sbjct: 124 SPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   +++DV++ ++R+KL  A  G   I+TV G GY
Sbjct: 184 GDNFYGTDRVVDVYVGQVRRKL-EAVAGVPLIQTVRGVGY 222


>gi|2952236|gb|AAC05479.1| response regulator SokA [Caulobacter crescentus CB15]
          Length = 73

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 60/65 (92%)

Query: 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           ELLSLRK TTLTKEMFLNHLY G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRG
Sbjct: 1   ELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRG 60

Query: 219 YVLRE 223
           YVLR+
Sbjct: 61  YVLRD 65


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L LK + + V     GE+G+EL     +D ++LDL L    G E
Sbjct: 6   KILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           + +  R     TP+ I +   ++ DKV  L  GA+DYI KPF  EEL+ARIR + R R  
Sbjct: 66  LCQEFRKL-TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNREN 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +    ++ ++L  K V +    I LT  E+ ++E     +  + ++E  L  ++ 
Sbjct: 125 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 185 YDFDGEEKIVDVYINSLRKKMDTES---KYIHTIRGFGYIFQ 223


>gi|271499378|ref|YP_003332403.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342933|gb|ACZ75698.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 226

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L +E F+      G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGNMLCEYLTAEGFSTSQVMTGKEGIDGAMSSQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R    + P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRNH-AIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +      +  GDL V    ++ E +G    LT  E+ ++ELL    +  +TK+   
Sbjct: 120 DKSEKSEDAGTVSYGDLVVCPSTRSSEWRGKAFDLTASEFNLLELLMRSSSRVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+        IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLAALDECNLTIETVRSVGYRIR 226


>gi|257870716|ref|ZP_05650369.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
 gi|257804880|gb|EEV33702.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
          Length = 217

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED++A+ + +   L  + +       G+   +  + +E D I+LD+ L +I G 
Sbjct: 1   MDVLIVEDNQAINNLLVKSLAKKGYRTIPIFDGKSAADYIENHEVDLILLDIMLPEISGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++      +   PV  L+  +++ DKVRGL+ GA+DYI+KPF  EEL AR+  ++RR +
Sbjct: 61  ELIDYF--VEFDIPVIFLTAKNTLHDKVRGLKLGAEDYITKPFELEELFARVETVLRRRK 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S I   ++ +  + ++V      I LT KEYQ+   L   +   L +E     +++
Sbjct: 119 KSSVSEINWHNIRIEDEKRSVFFNNELIALTPKEYQLFIYLVQNRGIILERETIYQRIWE 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              EP+ + +D+ I ++RKKL      +N + T++G GY+L E
Sbjct: 179 SPSEPDSRTLDLHIQRIRKKLH----LENELRTIYGVGYLLEE 217


>gi|238764462|ref|ZP_04625410.1| Transcriptional regulator in 2-component system [Yersinia
           kristensenii ATCC 33638]
 gi|238697274|gb|EEP90043.1| Transcriptional regulator in 2-component system [Yersinia
           kristensenii ATCC 33638]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L        ++  + +    G E
Sbjct: 3   KILLVDDDRELTALLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIM-MPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNVDQGAPILDVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQVR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+V +   G   +E       D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR A  S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDV 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G  + ++  G + ++++   V V G  + +  KE+ ++E L       LT+  
Sbjct: 123 SAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGY 228


>gi|239928546|ref|ZP_04685499.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291436871|ref|ZP_06576261.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291339766|gb|EFE66722.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPEGNGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGRIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + G A++ +  G + + L  + V V    + LT KE+ ++ LL+ R      +E 
Sbjct: 120 TVHEETTGAAEAELRLGPVRIELPTRQVSVNDSVVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LIETVRGVGYRL 223


>gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
 gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix
           family [Acidobacterium capsulatum ATCC 51196]
          Length = 231

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   +   L+S ++ ++    G + +++        +I DL + ++ G 
Sbjct: 1   MRILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYLEVNPALVITDLAMPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R  + STPV ++S  +   +K+R L  GADDYI+KPF  +EL+AR+R  +RR+ 
Sbjct: 61  ALTREIR-QRASTPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRRAS 119

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A+  I  GD  +N +   V ++G  I LT KE+ ++   +      LT +  
Sbjct: 120 ERESEVDYARPFITAGDFEINTERHIVRLRGEEIRLTPKEFDLLLQFARNPERVLTHKTL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L  ++      + + + V + +LRKK+    G   YI+T    GY
Sbjct: 180 LKAIWGPAGIDQQESLRVLVGQLRKKIERGPGTPQYIQTEPWIGY 224


>gi|218680187|ref|ZP_03528084.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           etli CIAT 894]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V          +       D I+LDLGL D  G 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVQEAPNAASARQSVADGTPDLIVLDLGLPDTSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V  L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWREEGLSVPVIILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  I L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGQEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V++ +LR+K+       +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYVRQLRQKVEKIPDQPHYITTETGVGYRLRE 228


>gi|183985285|ref|YP_001853576.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
 gi|183178611|gb|ACC43721.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
          Length = 235

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G EV
Sbjct: 12  VLVVDDEPVLAEMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDVMLPDMSGLEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----VR 117
           L  LR    + PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     V 
Sbjct: 72  LHRLRKENPALPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 131

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                AQ  +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 132 TVDSGAQ--LVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDR 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 190 VWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 232


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 130/231 (56%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ ++   +E  L    F V     GE+ +++ +  E D IILD+ +  + G++
Sbjct: 7   KILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGYQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V ++LR  +   P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +RIR I+RR ++
Sbjct: 67  VCQSLR-QESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H+       +I  G L ++ + + V     RI LT  E+ ++ELL  R    +++  FL
Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185

Query: 176 NHLY----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    DG+   + +++DV + +LR KL       + I +V G GY ++
Sbjct: 186 QKVWGYSPDGK--IDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAIQ 234


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR   
Sbjct: 63  ICKIMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL        YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLEIP-----YIKTVKGIGY 217


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K  + D IILD+ +  + G E 
Sbjct: 6   ILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  EL+ARI++ +RR + H
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYK-H 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S  V  +  + +D   V V  HR       I LT +E+ ++ +L++ +   L+ +   
Sbjct: 124 LNSRSVRNENEIQIDELIVNVASHRVTVAGEEIKLTPREFALLHMLAINRGLVLSMDKIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I KLR+K+        YI+TVWG GY
Sbjct: 184 TEVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGY 227


>gi|270291051|ref|ZP_06197274.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304385329|ref|ZP_07367674.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270280447|gb|EFA26282.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304328536|gb|EFL95757.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 240

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M+IL+IED+K+++  + +  K E + V     G   +E+ K    ++D ++LDL L    
Sbjct: 1   MQILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEIFKADPQQWDIVLLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   LR    + P+ +L+   S  D+V GL+ GAD+YI+KPF+   L+ARI+A+ RR
Sbjct: 61  GMEVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALHRR 120

Query: 119 -------SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
                  S    Q+    + T  L ++   + V + G  I  LT KE+ +++ L+ +   
Sbjct: 121 VLMNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKPMQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++E  L  ++D     + + +D  I KLR+KL   A G   ++TVWG GY   ++  D
Sbjct: 181 VFSREQLLQMVWDYEYYGDERTVDAHIKKLRQKLE--AVGPQVVQTVWGVGYKFDDSKID 238

Query: 228 E 228
           E
Sbjct: 239 E 239


>gi|297563434|ref|YP_003682408.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847882|gb|ADH69902.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 225

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 14/227 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   L++ +F+V      E  +        D ++LDLGL D  G 
Sbjct: 4   MRILVVEDDDRVARGLVTALRAASFDVQRVATAERALSAPPA---DVVLLDLGLPDADGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---- 116
           ++LR LR  +  T +  ++  S   D+VRGL++GADDY+ KPF   EL+ARI A++    
Sbjct: 61  DLLRKLR-DRPQTAIIAVTARSEERDRVRGLRAGADDYVVKPFGVAELLARIDAVLRRTR 119

Query: 117 --RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             R      +  +  G+L+V+  ++   V G  + LT KE+ ++ LL+ R  + + ++  
Sbjct: 120 AARAEAAEEEPAVRIGELTVDPGSRAASVGGAELQLTRKEFDLLALLASRSPSVVARDQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++    E   + +D  I  LR KL  A      I TV G GY+L
Sbjct: 180 LDQVWGTAWETSSRTLDTHIGSLRAKLGRAV----QIRTVRGVGYLL 222


>gi|225575342|ref|ZP_03783952.1| hypothetical protein RUMHYD_03432 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037439|gb|EEG47685.1| hypothetical protein RUMHYD_03432 [Blautia hydrogenotrophica DSM
           10507]
          Length = 215

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 122/219 (55%), Gaps = 9/219 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++   I+  L +          G + I + K + FD ++LD+ L DI G++V
Sbjct: 4   ILIVEDEASINELIKRTLNAAGHRCLQAYKGMEAISMGKSHTFDLVLLDVNLPDISGWKV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             +L     +TPV  ++    + DK+RGL  GA DYI KPF  EELVAR+  ++RR +  
Sbjct: 64  KESLG----NTPVIYVTARDELGDKIRGLNGGAQDYIVKPFAMEELVARVHVVLRRFQKD 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +   + G   V LD+  V+V G  + LT +E++++  L + KN  L+++  L+  +   
Sbjct: 120 EKLFRLHGT-EVFLDSCQVKVDGETVALTYQEFELLRTLIIHKNIALSRDQLLDMAWGMD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + +DV I ++RKKL      +N I+TV+ RGY L
Sbjct: 179 FLGDARTVDVHIQRIRKKLHL----ENDIKTVYKRGYRL 213


>gi|146301656|ref|YP_001196247.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156074|gb|ABQ06928.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 230

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD  +A  I   L+   + V     G + +      +FD IILD+ L DI GFE
Sbjct: 3   KVLLVEDDPRVASFILRGLEENLYQVKTVSKGYEAVNEVMENDFDIIILDIMLPDITGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  KI  P+ ILS + +  +KV+GLQSGADDY++KPF  EEL+ARI A +RR+  
Sbjct: 63  VCEILRNRKIIVPILILSALDTPHEKVKGLQSGADDYLAKPFLFEELLARINAQLRRAEF 122

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  L       + +N+  ++    G  ++L+ +E +++      +   L++      ++
Sbjct: 123 SSGILDFQSYAGIEINMKEQSASRDGKELNLSSRELKLLIFFMKNREKALSRIAIAEAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLRE 223
           +   +     +DV+I  LR K+      KN+    I TV G GY+L++
Sbjct: 183 NLELDMNSNTVDVYINYLRNKVD-----KNFSEPLIHTVKGTGYMLKK 225


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 11/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSEN-FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL ++DD+ + H I    + E+ F V     GE+ +++      D +ILD+ L  + G E
Sbjct: 15  ILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGLDGME 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  + + P+ +LS      DKV GL+ GADDY++KPF+  EL+AR++A  RR   
Sbjct: 75  TCRRIR-QQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRRVER 133

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + +     +G LS+N     V + G ++ L+ KE+Q++  L+   N  L++E     +
Sbjct: 134 MKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLYQKI 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G++  ++  + V I  +RKKL     G++ I+T+WG GY
Sbjct: 194 W-GQEFGDLNTVTVHIKNIRKKL-----GRDCIKTIWGVGY 228


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPGF 60
           +L+++D+ ++   +E       F+V   D G    E  K    ++D ++LDL L  + G 
Sbjct: 4   VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ +L+      D V GL+ GADDY++KPF+  ELVAR RA++RR+ 
Sbjct: 64  EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123

Query: 121 GHAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +         ++  G++ +++    V V+G  +  T KE+++++         L+++
Sbjct: 124 SREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L+ ++      + +I+DV +  LR+K+ + +    YI TV G GY   E  
Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTEGT 236


>gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 248

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDY-SQPLLKTIRGAGYMIKDEG 248


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L    +NV     GE+ I L    + + +ILD+ L  + G+ 
Sbjct: 9   KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDGYT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K + P+ +L+    I D+V GL+ GADDY+ KPF  +EL AR+R+++RRS  
Sbjct: 69  VCSELR-KKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +     + L   G+L++N   + V     R+ LTG E+ ++ELL       L++   L+
Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187

Query: 177 HLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E   + +++DV I +LR KL    G  + I T  G GY+ ++
Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMFQK 236


>gi|52784114|ref|YP_089943.1| YcbL [Bacillus licheniformis ATCC 14580]
 gi|52346616|gb|AAU39250.1| YcbL [Bacillus licheniformis ATCC 14580]
          Length = 201

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 110/197 (55%), Gaps = 7/197 (3%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           GE+G+ L +   +DAI+LD+ L  + G + L+ +R  +   PV ++S      DK  GL 
Sbjct: 5   GEEGVRLFQQGNYDAILLDIMLPKLNGMDFLKMIR-EQSKVPVLMISAKDGDVDKALGLG 63

Query: 93  SGADDYISKPFNKEELVARIRAIVRRSRGHA------QSLIVTGDLSVNLDAKTVEVQGH 146
            GADDYI+KPF+  EL ARI+A +RR+  ++      Q ++   +L+V+++  +V+  G 
Sbjct: 64  FGADDYIAKPFSMIELTARIKAAIRRATQYSVSEPANQKILRVHELTVDIENVSVQKNGE 123

Query: 147 RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG 206
            + LT  E++M+ L         TKE     +++     +  II+V + +LR+K+ +   
Sbjct: 124 PLQLTSTEWKMLTLFVTNPKKVFTKEQIYRSVWNDDYFGDQNIINVHMRRLREKIEDDPS 183

Query: 207 GKNYIETVWGRGYVLRE 223
              YI+T+WG GY L E
Sbjct: 184 SPQYIKTLWGIGYKLAE 200


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 128/222 (57%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ +   I++ L+S  ++  +   G+        Y+ D ++LD+ L  + G +
Sbjct: 7   KILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R     TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKWIR-KDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L  ++
Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            G D P + + +DV I +LR+KL    G +N+ IETVWG GY
Sbjct: 186 -GYDYPGDSRTVDVHIKRLREKLQ---GDQNWQIETVWGVGY 223


>gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 241

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 17/234 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +++   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRR 120

Query: 119 S--RGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
               G  ++L          + T  + ++   + V    +R+  LT KE+ ++  ++ + 
Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++E  L  ++      E + +D  I KLR+KL  +  G   I+TVWG GY
Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEKS--GPQIIQTVWGVGY 232


>gi|167836011|ref|ZP_02462894.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           thailandensis MSMB43]
          Length = 232

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQS 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVRFGDVSVDLALRRVWRGGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|307131849|ref|YP_003883865.1| transcriptional regulatory protein tctD [Dickeya dadantii 3937]
 gi|306529378|gb|ADM99308.1| Transcriptional regulatory protein tctD [Dickeya dadantii 3937]
          Length = 224

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 11/235 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LAH +E  L    F V     G    +L     +  ++LD+ L  + G 
Sbjct: 1   MRLLLVEDHPELAHWLEKALSEAGFAVDRVGDGVAADQLLLQESYALVVLDVSLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR    + PV +L+  +S+ D+VRGL  GADDY++KPF   EL AR+RA++RRS+
Sbjct: 61  ALLARLRKRGQNLPVLLLTARASVADRVRGLNLGADDYLTKPFELAELEARLRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q +   GDL  + D     +Q   + LT +E  ++  L  R+   ++++     ++ 
Sbjct: 121 GQIQEVQRLGDLCWH-DEGYFLLQEKPLALTPREQAVLHTLMQRRGRPVSRQYLYEQVFT 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             D+     +D+++ ++RKKL    G    I T+ G GY L        C++ E+
Sbjct: 180 LTDDASPDSLDLYVHRIRKKL---VGSDVMIVTLRGLGYSL-------ECQHAES 224


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|167622871|ref|YP_001673165.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352893|gb|ABZ75506.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 237

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDFLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPSLLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            AQ     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PAQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|154509392|ref|ZP_02045034.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799026|gb|EDN81446.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC
           17982]
          Length = 219

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L++  F   +   G + +E         ++LD+GL DI GFEV
Sbjct: 4   ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+AR+R  +R     
Sbjct: 64  LEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREETST 123

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++ +T G L ++L  +   V    + L+ +E+ ++E         L++E  L+ ++  
Sbjct: 124 SSAMTLTRGSLVLDLKTRRARVGAEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVWGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    ++DV++  LR+K+     GK+Y ETV G GY L
Sbjct: 184 DFDGASNVVDVYLSYLRQKI-----GKDYFETVRGMGYRL 218


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+  +   ++  L+  N+ V  +  G DG    K  + D I+LD  L +I G E
Sbjct: 4   KVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNISGIE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           VLR +R  K   + PV +L+  +   DKV GL+ GADDYI+KPF+ +EL+ARI +++RR 
Sbjct: 64  VLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLRRY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S G   +++ TG+L ++L    V     +I LT KE+++++LL   K   L++   L
Sbjct: 124 NLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNYLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      E + +DV I  LRKK+ +    + YIET+ G GY
Sbjct: 184 DKIWGYEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGY 227


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+S+ ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + ++T GDL ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYAL 225


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D I+LD+ +  + G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVDGIQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+      D++ GL +GADDY++KPF+ EE+ AR+RA++RR    
Sbjct: 65  CRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAPV 124

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         + +   DL ++  A+ V   G  + LT  E+ ++ELL+      L    
Sbjct: 125 PEPTTEGTVFDATLAVADLRLDPSARRVWRGGTELELTRTEFDLLELLARNAGIVLDHGT 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++     P  K + V+I  LR+K+ +  G    I TV G GY LRE
Sbjct: 185 IYSRIWGYDFGPGSKNLAVYIGYLRRKV-DQTGLTPLIHTVRGVGYTLRE 233


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 126/228 (55%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E F ++  D GE  +E  K +  D ++LDL L  I G EV
Sbjct: 6   ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGIDGLEV 65

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R L+ +K +T   P+ +L+      D VRGL+ GADDY++KPF+   ++AR+RA++RR+
Sbjct: 66  ARVLK-SKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRRN 124

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+  V G + ++   + V V G +I LT  E+ ++  L+ R     T+   +
Sbjct: 125 AAEPDDGIQAREVHG-IGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +         + +DV I  LRKKL   A GK  IETV G GY L+E
Sbjct: 184 SAVRGEGFAVTDRSVDVQIVGLRKKL--GASGK-VIETVRGVGYRLKE 228


>gi|15642901|ref|NP_227942.1| response regulator [Thermotoga maritima MSB8]
 gi|4980618|gb|AAD35220.1|AE001698_9 response regulator [Thermotoga maritima MSB8]
          Length = 220

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
            +I +++DDK +   + E + +      ++T  GED   L     F  ++LD+ L D  G
Sbjct: 3   WKIAVVDDDKNILKKVSEKLQQLGRVKTFLT--GEDF--LNDEEAFHVVVLDVMLPDYSG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+ R ++  +  T V +L+ +S  E  ++G ++GADDY++KPFN E L+AR++  + R 
Sbjct: 59  YEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + L   GDL ++    TV ++G RIHL  KE++++  L+      +T+E  L   +
Sbjct: 119 K---KGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFW 175

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    P  +++D  I ++RK + +      YI+T+WG GY+ 
Sbjct: 176 EDPVSP--RVVDTVIKRIRKAIEDDPNRPRYIKTIWGVGYMF 215


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 8/208 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLS 202
           L  ++      +V+ +DV I +LR+KL 
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKLK 210


>gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IEDD+ +   +  ++    +       G + +       +D +++DL L  + G 
Sbjct: 5   LRILIIEDDEDINRLLCNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLPGLSGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +   +   P+ I+S     + K+  L++GADDYI+KPF+ EE+ ARI + +RR R
Sbjct: 65  DILKIV-TKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYR 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +L+   D+ ++ DAK V V G+ + LT +EY+++ LL    N   TK     
Sbjct: 124 DIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +   I+V +  +R KLS A   + YIETVWG GY L+
Sbjct: 184 SVWNEPFYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKLK 229


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 17  KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 77  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 196 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 247


>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
 gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  IE+ LK+EN+ V+      + +E       D  ILD+ L DI GF 
Sbjct: 4   KILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDISGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + PV +L+   +  DK+ GL  GADDYI+KPF   E+VAR+++ +RR + 
Sbjct: 64  LCQKIR-ERYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  +L       I+  +L++++      +    I LT  E+ ++++L   +   ++ E  
Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182

Query: 175 LNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + ++  +DE   K    I V I +LR+KL +      YI+T+WG GY + E
Sbjct: 183 FHRIW--KDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIEE 232


>gi|149926517|ref|ZP_01914778.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Limnobacter sp. MED105]
 gi|149824880|gb|EDM84094.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Limnobacter sp. MED105]
          Length = 221

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   ++  LK  ++ V     GE  +   K   +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGEEVQDALKDASYAVDWVKNGETALSALKTQHYDLLLLDLGLPQRDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A+R +    P  I+S    + D+++GL  GADDY+ KPF   EL ARIRA+VRR  
Sbjct: 61  DVLKAIRASNNPIPALIVSARDQLSDRIQGLDHGADDYLLKPFEMAELFARIRAVVRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVE---VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A  ++  G L  NLD  T +   V    + L+ +EY ++  L +R    L++    + 
Sbjct: 121 GGAAPVLGNGIL--NLDPSTRQAWRVDLEPVQLSNREYALLHALLIRPGAILSRADLEDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y   +E E   I+  I  LRKKL     G + I+ V G G++++++
Sbjct: 179 VYGWGEEVESNAIEFLIHALRKKL-----GADSIKNVRGVGWMVQKS 220


>gi|116250926|ref|YP_766764.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255574|emb|CAK06654.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   +  I            V   G DG+   +   +D I++D  L  + G 
Sbjct: 5   MRILLIEDDTKTSDYIAKGFSEAGHVCDVVGDGRDGLFQAQREAYDVIVVDRMLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR AK+ T    L+ +  ++D+V GL++G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 65  AIVRSLRAAKVGTSALFLTSIGGVDDRVEGLEAGGDDYLVKPFAFSELMARVNALGRRPP 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++L  +     G  I L  +E+ ++E+L   +   +TK M L  ++
Sbjct: 125 VQEQRTVLKVADLELDLIRREARRAGQVIELQPREFTLLEVLMRGEGRVITKTMLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+         + TV   GY L
Sbjct: 185 DFHFDPKTSVVETHISRLRAKVDKPF-QIQLLHTVRNTGYSL 225


>gi|16331910|ref|NP_442638.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001828|dbj|BAA10709.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L  ++E  L+ EN   YV D  +DG     + +     +   I D  + 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRREN---YVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LR  + S P+ +L+    I D+V GL +GADDY+ KPF   EL+AR+R++
Sbjct: 58  GLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDA-KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            RRS       +  G   ++      V  +  RI LT KE+Q++E         L+ E  
Sbjct: 118 QRRSPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQI 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N L+    E    ++   +  LR+KL   + G N IETV+G GY
Sbjct: 178 KNQLWALSAESTSNVVAAQVRLLRRKLEEYSHG-NLIETVYGLGY 221


>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
 gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
          Length = 222

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ +  + G++
Sbjct: 3   RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  +  TPV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S ++ G   + LDA TV    H + L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSSLIIGQTKLELDAYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IITVRGLGY 218


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G+  +        D I+LD+ L D  GF +
Sbjct: 16  VLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGFRL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+   
Sbjct: 76  TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 135

Query: 123 AQSLIVTGDL---SVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A +  V   L    ++LD  T EV+  G  + L+  E++++          L K   L  
Sbjct: 136 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + +I+D ++  LR+KL +  G    + TV G GY LR
Sbjct: 196 VWRYDFSGDTRIVDTYVKNLRRKLDH-GGAPALLHTVRGVGYCLR 239


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + +     G  G+ + +   +DA+ILDL L  I G +
Sbjct: 6   RILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ ++S  SS   +V GL+ GADDY++KPF+  EL AR++A+ RR   
Sbjct: 66  ICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQEA 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++L +         L+++  A+ V +    I LT +E+ ++   +   +   ++   L
Sbjct: 126 MSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++  + +     ++  I +LR K+        YI TVWG GY
Sbjct: 186 DQVWGYQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGY 229


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ N       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IED++A+++ I++ L    +       G + + L K   FD I++D+ L  + GF
Sbjct: 3   INILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R+  ++ PV  L+  + + DKV GL++GA+DYI KPF   EL+ARI  ++RR  
Sbjct: 63  ELMK--RIKDLNIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I    L +  D + ++     I LT KE++++ LL   KN  L++E  L  ++ 
Sbjct: 121 KNSNC-IEFKSLQIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I K+RKKL+ A      I+TV+  GY L E
Sbjct: 180 YEYMGETRTIDTHIQKVRKKLNIADN----IKTVYKIGYRLEE 218


>gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 226

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+K +   I  +L    + V     G +GI   K   +D I+LD+ L    G E+
Sbjct: 4   ILLIEDNKDVNRMISEVLFDAGYQVKSAYTGIEGINEIKNSNYDLILLDIMLPYKSGDEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           L+ +R     TPV ++S    +  K+  L+ GADDYI+KPF+  E++ARI A +RR   +
Sbjct: 64  LKEMRNFS-DTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHKQ 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H   +I   D+ ++ ++K V V G  I LT KEY ++E+L   +    TK      ++ 
Sbjct: 123 VHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   +   +  LR KL  A   + YIETVWG GY L
Sbjct: 183 EEYLGDDNAVKTHVSNLRSKLQKANEHEKYIETVWGLGYRL 223


>gi|254390368|ref|ZP_05005585.1| transcriptional regulatory protein cutR [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813847|ref|ZP_06772490.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326442265|ref|ZP_08216999.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197704072|gb|EDY49884.1| transcriptional regulatory protein cutR [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326446|gb|EFG08089.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 217

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ALA  +   L+   F V     G++ +E    Y++D ++LD  L  + G 
Sbjct: 1   MRILVAEDERALAALVATGLRRAGFAVDTVHRGDEALEWLGLYDYDVVVLDRDLPGLHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RAL  A   T + +L+  ++  ++V GL  GADDY+ KPF+  ELV+R+RA+ RRS 
Sbjct: 61  EVARALVAAAARTRILMLTAATAARERVAGLDLGADDYLGKPFDFPELVSRVRALRRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+    + ++   +  E +G  + L+ KE+ +++LL      T++ E  L   +D
Sbjct: 121 RPVPPLLERRGIRLDPARRAAEREGRALDLSPKEFSVLQLLLEADGATVSAEELLERAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V + KLR KL    G    I TV G GY L
Sbjct: 181 VHTDPFTGAVRVCMSKLRAKL----GEPPLIGTVQGVGYRL 217


>gi|30750127|pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
           Thermotoga Maritima OmprPHOB HOMOLOG
          Length = 220

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 10/220 (4%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
            +I +++DDK +   + E + +      ++T  GED   L     F  ++LD+ L D  G
Sbjct: 3   WKIAVVDDDKNILKKVSEKLQQLGRVKTFLT--GEDF--LNDEEAFHVVVLDVXLPDYSG 58

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+ R ++  +  T V +L+ +S  E  ++G ++GADDY++KPFN E L+AR++  + R 
Sbjct: 59  YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + L   GDL ++    TV ++G RIHL  KE++++  L+      +T+E  L   +
Sbjct: 119 K---KGLYDFGDLKIDATGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFW 175

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    P  +++D  I ++RK + +      YI+T+WG GY
Sbjct: 176 EDPVSP--RVVDTVIKRIRKAIEDDPNRPRYIKTIWGVGY 213


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I+  L  E ++V     G   +E+ +   +D +ILD+ L  + G+ 
Sbjct: 3   KILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  PV +L+  S   D++ G +  AD+YI+KPFN   LVARI+AI RR+  
Sbjct: 63  VCREIRRESM-VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRRA-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+ ++  ++ VE++G  + LT KE++M+      +   L++E  LN ++  
Sbjct: 120 GKPDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +V+ +D  + +LRKK+     G+ YI+T+ G GY   E 
Sbjct: 180 DYFGDVRTVDTHVKRLRKKI-----GEIYIQTIRGFGYRFEEG 217


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 17/229 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + ++L++E + V   + GE  I + K  + D IILD+ +  + GF+
Sbjct: 4   KILIVDDNQEIREVVSVLLENEGYEVQEAEDGE--IAIAKAKDMDLIILDVMMPKMDGFK 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R +R    + P+  L+  +  +DK  G  SG DDY++KPF+  EL+AR++A++RR   
Sbjct: 62  ACRQIREVS-NAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 120

Query: 119 SRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +G  + L    IV  DL ++ ++  ++  G  ++LT  EYQ++ LL+       + +  
Sbjct: 121 YKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQEL 180

Query: 175 LNHLYDGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++ G   P +      I V I  LRKKL        YI+TVWG+GY
Sbjct: 181 YEAIWKG---PYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGY 226


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ + +L    +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R  +   PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVR-KESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +    I  G L +  D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+ +A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGY 224


>gi|238750821|ref|ZP_04612319.1| Transcriptional regulator in 2-component system [Yersinia rohdei
           ATCC 43380]
 gi|238710965|gb|EEQ03185.1| Transcriptional regulator in 2-component system [Yersinia rohdei
           ATCC 43380]
          Length = 264

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L        ++  + +    G E
Sbjct: 35  KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDIM-MPRKNGIE 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 94  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 152

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 153 SEQQQNVDQGAPILDVDCLQLNPGRQEATFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 212

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 213 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 260


>gi|284005888|ref|YP_003391707.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
 gi|283821072|gb|ADB42908.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 226

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  L  +I   L+ E + V   D    G      YE+D +++D+ L    G 
Sbjct: 1   MKLLLIEDEPVLQQTIRTYLEREGYRVTTADTFLQGSRRANDYEYDCLLVDITLPGGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R ++  +  T + I+S   +++D++ GL  GADDY++KPF+  EL +R+++++RR  
Sbjct: 61  DIIREVKQLQPQTGIIIISAKDALDDRITGLDLGADDYLTKPFHLSELNSRLKSVLRRRL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G L+++   + V++QG  + +TGK+Y ++  L   KN  L+K     H++ 
Sbjct: 121 FAGSQIITFGALTIDPQPQQVQIQGQPVEMTGKQYDLLLYLISNKNRLLSKAAIAEHVWG 180

Query: 181 GRDEPEVKIIDVFICK----LRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E+     FI +    LRKKL  AAG  +YI+T +G GY+ 
Sbjct: 181 --DSMELADSHDFIYQHVKNLRKKLL-AAGCPDYIKTRYGAGYLF 222


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 17/231 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G EV
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++R  RGH
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLR--RGH 120

Query: 123 --------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                         A+ ++  G + ++++  TV V    + +  KE+ ++E L       
Sbjct: 121 DSGAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LT+   ++ ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 181 LTRGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGY 231


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G 
Sbjct: 5   FRILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAV 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E
Sbjct: 124 PTTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
             L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 184 QLLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+K +   +   L+ E F V +   G + +++ +  + D I+LDL L  + G+EV
Sbjct: 5   ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R  K +TP+ +L+      DK+ GL+ GADDYI+KPF+  EL  RI+A++RRSR H
Sbjct: 65  MKKIR-QKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q   V+  +LS+N +     +    + LT  E++++ LL+       ++   L  ++  
Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E   + ID  I  LR K+      +  I+TV+G GY L
Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 18/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD AL+  I   L+ + + V V   GE  +E  +    D ++LD  L  I G EV
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGISGLEV 65

Query: 63  LRALR-VAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   K +T P+ +LS      D +RGL +GADDY+ KPF+ E L AR++A++RR  
Sbjct: 66  CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR-- 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK-------EYQMIELLSLRKNTTLTKEM 173
                 +   D ++  D   ++   H++   G+       EY+++E   L      ++E 
Sbjct: 124 ------LPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREE 177

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L H ++     E++ +DV I +LR+ L N    ++ I TV  RGY L
Sbjct: 178 LLKHAWERSSFVELRTVDVHIRRLRQTL-NEGDEQDIIRTVRARGYAL 224


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 114/207 (55%), Gaps = 9/207 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIR-AKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    + +NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKK 200
            L+ ++      + + +DV I +LR+K
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREK 211


>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 222

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   ++  L +E +   V   G+  + L   Y +D I+LD  L D+ G 
Sbjct: 1   MRILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + +R  +   P+ +L+     ED++ G Q G DDYI KPFN  EL+ RI+AI++R+ 
Sbjct: 61  EICKQIR-QQSDIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKRTI 119

Query: 120 RGHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   Q LI  G D  +N  +  ++V+G  + LT  EY+++  LS       T+E  L + 
Sbjct: 120 KKDNQDLIKFGTDFELNTLSHQLKVKGQEVPLTNTEYKILLALSSHPQKVYTREELLAYA 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            DG  E   ++ID  I  LR K+   +     I TV+G GY
Sbjct: 180 VDGYVEKFDRVIDSHIKNLRHKIEIDS----IILTVYGVGY 216


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
 gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
           [Jonquetella anthropi E3_33 E1]
          Length = 237

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   LK   +       G+ G+EL      D ++LDL L  + G+EV
Sbjct: 6   ILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLPGLEGWEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R A  +  TPV +++      + V GL +GADDYI KPF+  EL+AR+ A +RR  
Sbjct: 66  CRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRRRS 125

Query: 121 GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q    T D  + LD +T  V + G    L+  E+Q++ELL+ R    ++++     +
Sbjct: 126 MARQDAEETKDERIVLDQETGVVRIDGWEAELSPTEFQILELLASRPGRPVSRDRITAVV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G D  E + +D  + +LRKKLS    G   I T+  RGY L
Sbjct: 186 W-GLDPAESRALDTHLSRLRKKLSGCPDGPE-ITTLRSRGYRL 226


>gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +++ V     GE  +E    +  D ++LD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNLPDTTGFI 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++ ++ S  + +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEMQ-SRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A S    +V GDL ++   + V +    I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   E E +++DV I ++RKK+         I+T+ G GY+     K+
Sbjct: 184 WDYDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFDRRVKE 232


>gi|74231708|gb|ABA00873.1| NsuR [Streptococcus uberis]
          Length = 232

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   +  +L+ +N+NV      +  IE+  F  FD I+LD+ + DI G +
Sbjct: 3   KILVIDDDFEILKLMRTILEMKNYNVTTYQEVKLPIEMSDFKGFDLILLDVMMPDIDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   +S+P+  +S   S +D V GL  G DDYI+KPF+  +LVA++ A ++R   
Sbjct: 63  ICKQIR-ESVSSPIIFVSAKDSEDDIVSGLNLGGDDYITKPFSVNQLVAKVAAHLKREER 121

Query: 122 HAQSL----IVTGDLSVN--LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H  S     +V   L +   L  K V + G  I LT +EY +++LL+ +KN   T+E   
Sbjct: 122 HRNSKSNENVVRELLPITFYLQEKIVCINGEVISLTCREYDILDLLASKKNKVYTREEIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +YD   +   + I  ++ ++R K S    G N I+T+ G GY
Sbjct: 182 KRVYDEESDALFRSISEYVYQIRVKFS--PYGINPIKTIRGIGY 223


>gi|73541031|ref|YP_295551.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72118444|gb|AAZ60707.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 249

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+   + V     G +G        +DA +LDLGL    G 
Sbjct: 27  MRILIVEDDPMLGDGLLHGLQLVGYVVDWFTTGAEGDHALGMVHYDAAVLDLGLPGDDGM 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R      PV +L+   +IE ++ GL SGADDY+ KP + +EL AR+RA+ RR+ 
Sbjct: 87  TWLRRWRERGCQIPVLVLTARDAIESRISGLDSGADDYLVKPISLDELAARLRAMTRRAA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++  +   G L  +  AK     G  + LT +E  ++ELL    N  LT++   + LYD
Sbjct: 147 GNSAPVWRHGALEFHPAAKQALWHGKPVDLTSREAMLLELLLAHPNRLLTRDFLRDKLYD 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   E   ++V I  LR+K+         + T  G GY L
Sbjct: 207 WQGGLESNTLEVHIHHLRRKIH-----PKIVRTFRGAGYTL 242


>gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 231

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 4/213 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +DD ALA  I ++L  E +N    + G    E    +  D ++LDL L    G EV   +
Sbjct: 12  DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLMLPGKSGIEVCEQI 71

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIRA + R R   Q +
Sbjct: 72  RSSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARL-RPRESRQLV 129

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  GD  +++D +T++ +G  + +T  E+ ++  L  R    ++++  L  ++ G  +  
Sbjct: 130 VRVGDTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVW-GYSDVS 188

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++V + +LR K ++  G +  I+TV G GY
Sbjct: 189 DSLVNVHVQRLRAKFTD-IGAEQVIQTVRGVGY 220


>gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541]
 gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F V ++  G++G       E+  I+LD+ L    GF 
Sbjct: 3   KILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + RA+R  ++  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVR-RELDIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A S++  G L +      V V GH + L  +E++++  L+       +KE   
Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++D      V  + V + +LR+K+        +++TVWG GY     A
Sbjct: 182 DRVWDLDAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFNSEA 231


>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEADPKEPKFIQNVWGVGY 238


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  + + LK+E F   V   G + ++L + ++FD  +LD+ L D  GF 
Sbjct: 4   KILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCSGFH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R +  + PV +L+      DK+ GL  GADDYI+KPFN  E+ AR++A +RR   
Sbjct: 64  LCEEIR-SHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+    ++I    L +N       + G +++LT  E+ ++++L   +   ++ +    
Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V I ++R+K+        +I+TVWG GY
Sbjct: 183 SIWKEKYFESNNTVMVHIRRIREKMHEQPRNPKFIKTVWGMGY 225


>gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 243

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 125/247 (50%), Gaps = 23/247 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+ ++A  + +  + E + V     GE+G  L KF E    FD I LDL L  
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEG--LAKFKEAPDSFDIITLDLNLPK 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  MDGMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVE--------------VQGHRIH-LTGKEYQMIELL 161
           RR+   A++           D   VE              + G +I  LT KE+ ++  L
Sbjct: 119 RRAEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTL 178

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           S       ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY  
Sbjct: 179 SKSPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKF 236

Query: 222 RENAKDE 228
            ++  D+
Sbjct: 237 DDSGLDQ 243


>gi|119471563|ref|ZP_01613977.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
 gi|119445506|gb|EAW26792.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
          Length = 234

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + +  +V   G++ +   K    + ++LD+ L    G  V
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSQVKTLNPNIVLLDIMLPGQDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR +  + P+ +L+      D+V GL+ GA DYI KP     L+ARI+A +R+S   
Sbjct: 67  CRELR-SFYNAPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQSSEP 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S I  G L++N +++ V+  G  ++++  EY ++  L+      ++++     
Sbjct: 126 NKLEKVESTISVGSLNINTESRNVKFNGQDVNISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                YDG D    + +DV I  LRKK S+       I+T+WGRGY+L   A
Sbjct: 186 TKGREYDGLD----RSVDVLISALRKKFSDDPQNPEKIKTIWGRGYLLVSTA 233


>gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 239

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED++++   I + LK   F       GE+ +E + +       +LD+ L  I GF
Sbjct: 3   KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+       + +L+      DKV GL  GADDY+ KPF+ +EL+ARI A++RR +
Sbjct: 63  EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G A++ + +G   + LD K        I LT KE+++I+L     +  ++++ 
Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            LN ++      ++KI+DV I ++R+K+ N       +E VWG GY  R   ++E
Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWRGGVENE 237


>gi|254239280|ref|ZP_04932603.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|126171211|gb|EAZ56722.1| two-component response regulator [Pseudomonas aeruginosa C3719]
          Length = 239

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQLRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 SRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            RG A       +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 129 ERGGAPDRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 235


>gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 241

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD  L   +   L+ E F  ++VTD GE G+        D  ILD+ L +  GF
Sbjct: 7   RILVVDDDGELGELLRTYLEREGFACLHVTD-GETGLREALSGRQDLAILDVMLPEKSGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R A+   PV +L+      D+V GL+ GADDYI KPF   EL AR+RA++RR+ 
Sbjct: 66  DVLREIR-ARSDLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLRRTD 124

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +         +  GDL + L ++TV V G  + LTG E++++  L       ++ E 
Sbjct: 125 RKEEDPAPEDADRLSVGDLELCLLSRTVRVGGQSVSLTGTEFRLLRALLASAGFLVSLES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R     + + V +  LR+KL     G   I TV G GYVL
Sbjct: 185 LSPEVLGRRHSAFDRSLGVHLSNLRRKLGPYPDGMERIRTVRGEGYVL 232


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 42  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 102 VCRRVQ-AHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 160

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 161 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 220

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 221 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 267


>gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 243

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   IE  LK E   V     G+  IE+      D +ILD+ + ++ G+EV
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQPIDLVILDIKMPELSGWEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R  K +TPV +L+ +    DKV  L+ GADD++ KPFN  E+VAR++A++RR++ +
Sbjct: 75  LNKIR-QKAATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQQN 133

Query: 123 AQSL---IVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+    ++  ++ VN +  T  +    Q   ++LT  EY+++ L+    +   T+   +
Sbjct: 134 QQTPNRNLIYKNIEVNTEIHTAYIHSGDQKQTLNLTLTEYKILLLMLPHPHKVFTRSELM 193

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N     RD  E + +D  + KLRKK+ +  G +N +  V G GY L
Sbjct: 194 NQCLPDRDALE-RTVDSHVSKLRKKIED-LGLRNMLINVRGVGYRL 237


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 121 GHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q  +V        G + ++ + +TV V G ++ LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A   +  L +  F V     G  G+ + +  ++D I+LD+ L  + GF 
Sbjct: 3   KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K   PV +++      D +RGL  GADDYI KPFN  ELVAR+R+ + R   
Sbjct: 63  VCRELRRYK-EVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    Q ++ +G L + LDA  V +    +  T +E++++  L+   N   ++E   
Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I ++R+K+        Y+ET+ G GY  R
Sbjct: 182 ERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  R+ K++  P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R  
Sbjct: 64  AIK--RIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVS 121

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K           
Sbjct: 122 TSVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 182 RVWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|157158031|ref|YP_001464487.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           E24377A]
 gi|157080061|gb|ABV19769.1| transcriptional regulatory protein QseB [Escherichia coli E24377A]
          Length = 215

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF     +  + A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFA----LIGLEALMRRTN 116

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 117 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V +  LR+KL     G ++I TV G GY L E 
Sbjct: 177 WDEEVTSNAVEVHVHHLRRKL-----GSDFIRTVHGIGYTLGEK 215


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+K ++  ++  L+ E++ V+    G++G+E+ +  + D ++LDL +  I G 
Sbjct: 7   IKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 67  DLIKEIR-NKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 125

Query: 121 GHA---QSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
            +      +I T D  L ++L+       G  I LT  E+Q+I+ L    N   T+    
Sbjct: 126 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+     YD  D    + ID  I  +R+K+ +     +YI+T++G GY
Sbjct: 186 EITFGFDYDAYD----RAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGY 229


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A      L+  +F V +   G +G+E     E+  I+LDL L D+ GFE
Sbjct: 3   KILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ +++   +  DK+RGL  G DDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQIREKK-DIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +  D      L ++   + V V       T KE+ ++  L+   N   +K+   
Sbjct: 122 LVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++     ++  + V I K+R+K+        YIETVWG GY  R
Sbjct: 182 SKIWNMDSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRFR 228


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ +A  +   L    F V +   G   +EL    + D +ILD  L  + G E
Sbjct: 33  RILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDGVE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR   +S PV +++ + + +D++ GL+ GADDY++KPF+  ELV R+++++RRS  
Sbjct: 93  VCRRLR-QTMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRRSIK 151

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L ++  ++TV   G  + LT +E+ ++  +  R N   ++E  +  ++
Sbjct: 152 EFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELIKAVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G D  ++  + V + +LR+K+         ++TVWG GY
Sbjct: 212 -GWDFGDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGY 250


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  + + + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR LR A  S PV +L+     ED+++GL+ GADDYI KPF+  ELV+RIRA++RR    
Sbjct: 69  LRRLRQAS-SVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127

Query: 120 RGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D L ++   + V V G R++L   EY+++  L       +T E  L+ +
Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + +++  LR+K+        YI T  G GY
Sbjct: 188 WGPEYRDETHYLRLYVTYLRQKIEEDPANPKYILTERGIGY 228


>gi|254296317|ref|ZP_04963774.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157805706|gb|EDO82876.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
          Length = 210

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 5/167 (2%)

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR
Sbjct: 49  GIDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR 108

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +
Sbjct: 109 QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKM 168

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           Y   +E     ++V+I  LRKKL     G + I  V G GY++ + A
Sbjct: 169 YGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMVVKEA 210


>gi|307709734|ref|ZP_07646185.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis
           SK564]
 gi|307619436|gb|EFN98561.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis
           SK564]
          Length = 228

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 129/221 (58%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   I+ +L+ E + V + +  E+ I+LC F  FD I+LD+ +  + G E
Sbjct: 4   KILVVDDDLAILRLIKKVLEYEKYEVVIRNKIEE-IDLCDFTGFDLILLDI-MMPVSGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  +I+ P+C ++     ED V G+ +GADDYI KPF+ +EL+AR++  +RR   
Sbjct: 62  ICQMIR-EQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREER 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G+    I  G L +  D+K + V   +I LT +E+ ++ LL+   +   + E   N+L
Sbjct: 121 IKGNVHQ-IKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E  ++ +  +I ++R+KL       N I+T++G GY
Sbjct: 180 YPQSSEALLRSVSEYIYQIRQKLK--PYQLNPIKTLYGGGY 218


>gi|295094617|emb|CBK83708.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ + + ++ ++++  +   +      G+ +   +  D +ILDLGL D  G  
Sbjct: 7   KVLIIEDEQNINNLLDTLMQANGYQTIIATSCGSGLMMYASHRPDIVILDLGLPDKDGIS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
            L  +R     TPV +LS  S  +DKV  L  GA+DY++KPF  EELVAR+R+ +R    
Sbjct: 67  FLTEIRKTDF-TPVIVLSARSDEKDKVEALNLGANDYVTKPFGSEELVARVRSALRTVLY 125

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + H   L      TGDL ++ +A+ V +    I LT  EY +++LLS      LT    +
Sbjct: 126 QAHDSELPTGKFQTGDLLIDYEARRVFIGDEEIKLTQTEYNIVDLLSRHPGKMLTYSFIV 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   D    K + V +  +RKK     G K++I    G GY
Sbjct: 186 KEVWGYNDMGSTKRLQVNMANIRKKFGVKPGKKSFIINELGVGY 229


>gi|289167181|ref|YP_003445448.1| response regulator [Streptococcus mitis B6]
 gi|288906746|emb|CBJ21580.1| response regulator [Streptococcus mitis B6]
          Length = 228

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 129/221 (58%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   I+ +L+ E + V + +  E+ I+LC F  FD I+LD+ +  + G E
Sbjct: 4   KILVVDDDLAILRLIKKVLEYEKYEVVIRNKIEE-IDLCDFIGFDLILLDI-MMPVSGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  +I+ P+C ++     ED V G+ +GADDYI KPF+ +EL+AR++  +RR   
Sbjct: 62  ICQMIR-EQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREER 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G+    I  G L +  D+K + V   +I LT +E+ ++ LL+   +   + E   N+L
Sbjct: 121 IKGNVHQ-IKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E  ++ +  +I ++R+KL       N I+T++G GY
Sbjct: 180 YPQSSEALLRSVSEYIYQIRQKLK--PYQLNPIKTLYGGGY 218


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|86160274|ref|YP_467059.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776785|gb|ABC83622.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 227

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +A  +   L  E   V V   G    E      +D ++LD  L D+ G 
Sbjct: 1   MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLGAREQATSIAYDVVLLDWSLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   + TPV +L+   S  +KV GL++GADDY+ KPF+ +EL+ARI A+ R  R
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELLARIEALHR--R 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G ++++   + + V      LT +EY ++  L+      L++   +  ++ 
Sbjct: 119 GGATDVSALGPVTLDARRRALVVGARSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    ++DV++  LR KL         IE+V G GY L
Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRL 219


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ + +L    +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R  +   PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVR-KESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             + ++     I  G L +  D+  V+ ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+ +A  G+  I+TVWG GY
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGY 224


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  IVKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 239

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ +  + G++
Sbjct: 20  RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  +  TPV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 80  LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 139

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S ++ G   + LDA TV    H + L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 140 NYSSSLIIGQTKLELDAYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 199

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 200 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IITVRGLGY 235


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           RIL+++D++A+   ++  L+   +        E+  +  +  E  D IILD  L D+ G 
Sbjct: 3   RILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMSGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR   I+ P+  L+ +    ++V  L+ GADDYI+KPF   EL ARIRA++RR +
Sbjct: 63  DICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRYQ 122

Query: 121 --GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             G+ +     ++  G + ++L   TV V G  + LT KE+Q++  L+   +  +T++  
Sbjct: 123 LSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+H++  +   + +++DV I  LR K+         I+TV G GY L
Sbjct: 183 LDHIWGFKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+  +   I+  L++  F V V D GED +        D  ILD+ L  I G EV
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGIDGLEV 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+      + P+ +L+  S   DKV GL+ GADDYI+KPF+  ELVAR++A+ RR  
Sbjct: 66  CRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFRRVN 125

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +    ++  G+++++ + + V      + +  KE++++++L L K   L++E  L+ 
Sbjct: 126 TATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E + +DV I  LR+K+ +      YIETV G GY   +   D
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRFTDKNPD 235


>gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RILL+EDD  +   +   L+ E   V+    G  G  L + +E    D ++LD GL D+ 
Sbjct: 3   RILLVEDDPQVGELVRRYLEKEGMEVFWARSG--GEALGRVFEGERPDLVVLDRGLPDME 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVL+ LR      PV +L+G +  + +V GL  GADDY+ KPF+ +EL+ARI+A++RR
Sbjct: 61  GLEVLKELRELDPLLPVLLLTGRADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    +     G L ++L+A+   ++G  + L+  E  ++  L        T+E  L  +
Sbjct: 121 AGKEGRRRF--GPLELDLEARQAFLEGEPLKLSPTEMNLLLTLVQAPGRVYTREELLERV 178

Query: 179 YDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G D P   +++D +I  LRKKL + A    +IETV G GY
Sbjct: 179 W-GPDFPGSERVVDAYIRLLRKKLKDDAQAPRFIETVVGMGY 219


>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 225

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + +E    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-RESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +LS   N   ++E  ++++   
Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILSRNPNRIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 226


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 130/228 (57%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+K ++  ++  L+ E++ V+    G++G+E+ +  + D ++LDL +  I G 
Sbjct: 4   IKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 64  DLIKEIR-NKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122

Query: 121 GHA---QSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
            +      +I T D  L ++L+       G  I LT  E+Q+I+ L    N   T+    
Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+     YD  D    + ID  I  +R+K+ +     +YI+T++G GY
Sbjct: 183 EITFGFDYDAYD----RAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGY 226


>gi|320335876|ref|YP_004172587.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319757165|gb|ADV68922.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 221

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A+ + + L    F V   D    G+   +    D I+LDLGL D  G +V
Sbjct: 6   ILVIEDDHDIANVLRMDLADAGFEVKHADAAMTGLIKAREDNPDLILLDLGLPDFDGGDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + PV +L+   ++++KVR L  GADDY+ KPF+ +EL+ARI+  +R+    
Sbjct: 66  VQRLR-KNSTVPVIVLTARDTVDEKVRLLSLGADDYVIKPFHPDELLARIKVQLRQRGSE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +L   GDL ++   + V  QG  + L+ KE+ ++ LL  +     +++     ++ GR
Sbjct: 125 TLTL---GDLQLDPQKRLVLFQGEELRLSPKEFDILALLMRQPGRVYSRQEIGQEIWQGR 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++DV +  LR KL +   G   + TV G GY LR
Sbjct: 182 LPEGSNVVDVHMANLRAKLRDLE-GYGLLRTVRGVGYALR 220


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  +   + L L++  F+V   D G    +L K    D  I D+ + ++ GFE
Sbjct: 4   KILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+   S P+  LS M++  DK+ GL  GADDYI+KPFN  E+VAR+++ +RR   
Sbjct: 64  LTKRVRITS-SIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122

Query: 119 --SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S  H    L+  G+L+++    T++  G  I LT  E++++  L  +     TK    
Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +     E +   + V I KLR+KL + +    Y++TV G GY
Sbjct: 183 ERINGEYFENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGY 226


>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 226

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M+ILLIED++     +   L       YV D   DG E  +F     +  IILD+ L  +
Sbjct: 1   MKILLIEDNQKTRDWVSQGLSEAG---YVVDQASDGKEGLRFALQESYALIILDIMLPGL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++VL+ALR A   TPV  L+   ++ED+V+GL+S A+DY+ KPF+  EL+AR+RA +R
Sbjct: 58  DGWQVLKALRTAN-QTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H   L ++G L ++   ++V   G  I LT KE+ ++ LL+ R    + + +  + 
Sbjct: 117 NHSPHHTYLKISG-LEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASE 175

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++    + E   +DV I +LR K+ +    K  I TV G GY  R +   E 
Sbjct: 176 VWGINFDSETNTVDVAIRRLRSKVDDPFDVK-LIGTVRGMGYRFRADEHHEA 226


>gi|255283852|ref|ZP_05348407.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255265573|gb|EET58778.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 240

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/195 (36%), Positives = 108/195 (55%), Gaps = 1/195 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK L  S++  L+ + + V V   GE+G+ L K    D ++LD  L  + G 
Sbjct: 15  MRILMIEDDKKLCASVKFQLEKQGYAVDVCHDGEEGLFLMKERAHDCVLLDRMLPGMDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R++ + TPV +L+ +  ++DKV GL  GADDYI KPF  EEL ARIR+ +RR  
Sbjct: 75  SVLKNARISGVRTPVILLTALGDLQDKVAGLDMGADDYIVKPFAFEELTARIRSTLRRPL 134

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 I++ GD+S +   KT+        L+ +E  ++EL       TL + + L  ++
Sbjct: 135 VWTDEHILSYGDISYDSAQKTLSRYDVSCSLSRREGDLMELFLRNPAQTLPRLLILTRVW 194

Query: 180 DGRDEPEVKIIDVFI 194
               E E   +D +I
Sbjct: 195 GPDAEIEDGNLDNYI 209


>gi|242278412|ref|YP_002990541.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242121306|gb|ACS79002.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  +   +   L  E ++++     ++G++     E+D I+LD+ L DI G  
Sbjct: 3   KILLIDDDPEMGELLSTYLDGEGYSLHHKCTAKEGLKAFGSDEYDLILLDIVLPDISGLN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R+   + PV +L+G     D+V GL+ GADDYI KPF   EL+AR+RA +RR   
Sbjct: 63  VLEKIRLDS-TVPVIMLTGKGDEVDRVVGLEMGADDYICKPFPLRELLARMRASLRRCSM 121

Query: 122 HAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             QS  +T         G+L +NLD+  + V+G   H T  E+ ++E L+      + ++
Sbjct: 122 TPQSHSITPSSRGKLKVGELDINLDSHAIMVKGIETHFTAAEFSIVEHLAASCGKLIERD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +        + +  +++V +  LR+K+ ++      I+T+ GRGY++
Sbjct: 182 ELMEIALGRSADFDDYVLNVHMSNLRRKIGDSVS----IKTIRGRGYMM 226


>gi|117620485|ref|YP_855300.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561892|gb|ABK38840.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 226

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F       G+ G++      + A++LD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLSGEGFATTHVLTGKSGVQHALSGNYAAVVLDIMLPDLNGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  EVLRQIR-RDSRIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRVE 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G  Q L + G+L ++  ++    Q   + LT  E+ ++ELL       ++K+  
Sbjct: 120 PAPANPGKVQGLRL-GELVLSPASRQCHWQAQPLELTATEFNLLELLLRSPERVVSKDEL 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H      EP  + +DV IC +R+KL   AG    IETV   GY L
Sbjct: 179 SLHGLGRPREPYDRSVDVHICNIRQKLQALAGEAVGIETVRSIGYRL 225


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+   +   LK   F       GE G++  K  + D I+LD  L  I G E 
Sbjct: 5   VLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGIDGIEF 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +R LR  +   + PV +L+     ED V+GL  GADDY++KPF+  EL+ARIRA++RR  
Sbjct: 65  IRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRCQ 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    Q L  +G+L ++  +  V V   RI L   E++++            +   L+
Sbjct: 125 PDSSDEGQQL-QSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++      E + +DV I +LRK L  ++G  + I+TV G GY
Sbjct: 184 YVWGDTVYIEERTVDVHIRRLRKAL-ESSGHDHLIQTVRGVGY 225


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+ E + +   + GE  ++     ++  I+LD+ L  + G E
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K STPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQTK-STPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV  +L +  DA  V   G  I LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKL 234


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I L L+ E + V     G + ++  K      ++LD+ L  I G++
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R    S P+ +L+      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRKVS-SIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEH 124

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +L +   +L +N    T+ ++G+ I L  KE +++  L+   N   T+E  L H++
Sbjct: 125 KEVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +DV + ++R+K+ +  G    ++TVWG GY
Sbjct: 185 GFDFYGDSRTVDVHVKRVREKI-DLDGQPWQLKTVWGVGY 223


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  115 bits (287), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K +  ++   L+ E + V     G+  +E  + + FD IILDL L  + G  
Sbjct: 7   RILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-NVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
            ++  +     G L +++    V V+   I LT  E++++  L+       T+    E  
Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L + ++G +    + ID  +  LR KL +      ++ TV G GY
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGY 226


>gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
 gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
          Length = 233

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N+ V     GE GIE+     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLALELRYKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V + LR     TP+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R +  
Sbjct: 72  VCQELRKLA-DTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +   +  ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 131 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+ + +    YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKIDSKS---KYIHTIRGFGYIFQ 229


>gi|222102784|ref|YP_002539823.1| two component response regulator [Agrobacterium vitis S4]
 gi|221739385|gb|ACM40118.1| two component response regulator [Agrobacterium vitis S4]
          Length = 228

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  L   +   L  E F V+    G+ G+        D ++LD+ +  + G +V
Sbjct: 4   VLLIDDDTELTTILSEYLTGEGFTVFAVVNGKQGLAEIAARRIDMVVLDIMMPQMNGIDV 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           L+  R+ ++S  PV +L+      D++ GL  GADDY++KP +  ELVAR+RAI+RR   
Sbjct: 64  LQ--RIRRVSEVPVLMLTARGDDVDRISGLNLGADDYVAKPCSSGELVARLRAILRRVGP 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      + +GDL +N   +T E +G    LTG E+ ++E+L +R    L    F++  
Sbjct: 122 DKDVETEQLRSGDLVLNPANRTAEWRGLPFELTGTEFILLEVL-VRNAGQLISRQFISKQ 180

Query: 179 YDGRDEPEVKI---IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             GR  P V     IDV I  +R+KL     G+++I++V G+GY L
Sbjct: 181 AFGR--PLVAFDRRIDVHISSVRQKLGRREDGQSWIQSVRGQGYQL 224


>gi|126665458|ref|ZP_01736440.1| probable two-component response regulator [Marinobacter sp. ELB17]
 gi|126630086|gb|EBA00702.1| probable two-component response regulator [Marinobacter sp. ELB17]
          Length = 228

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  ++  ML+++   V   + G+  +       FD  ILDL L  + G 
Sbjct: 1   MRILLVEDDHLLGSTLLGMLRADQHTVDWLNDGQQALNALVDEHFDLAILDLTLPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R  R      P+ IL+  + +E+K++GL +GADDY++KPF   EL ARIRA+ RR  
Sbjct: 61  DIVRHTRQQGNQLPIIILTARAELEEKLQGLDAGADDYLTKPFAMAELKARIRAVTRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++ G L+++  +  +        L   E+Q+++ +    +   T+      LY 
Sbjct: 121 STNGDQLIVGQLTLDPASAQLTCGTGTATLPRSEFQILQYMMRHPDQVATRRRLEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
                E   ++V I  LR+++     GK  I T+ G GY L   A     E L
Sbjct: 181 WEPGAESNALEVHIHHLRRRV-----GKATIRTIRGVGYFLDSQAASGVPECL 228


>gi|331002395|ref|ZP_08325913.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410211|gb|EGG89645.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 220

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED++ + + +   L+  N+ V     GE+ + L    E+D IILDL +  + G 
Sbjct: 1   MRLLICEDEEDILNGLAKGLRKLNYYVDTAMDGEEALSLYFESEYDLIILDLNMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R     + V ILS   ++ DKV GL  GA+DY+ KPF+  EL ARIR ++R   
Sbjct: 61  EVLKTIREDNAESKVIILSARDTLNDKVLGLDLGANDYLVKPFHFRELEARIRVLLRNNY 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S       I + D+++ L  K V+  G  I LT KEY + E L + K   ++    L H 
Sbjct: 121 STNDDTIRIESQDITLYLSKKQVQKGGEIIPLTPKEYSIFEYLCINKGNLISTGELLEHN 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            D        +I V I  +RKKL     G + I+T  G GY + +
Sbjct: 181 IDMNANDASTVIKVHIAAIRKKL-----GSDVIKTNRGMGYTIND 220


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|260430399|ref|ZP_05784372.1| DNA-binding response regulator [Citreicella sp. SE45]
 gi|260418428|gb|EEX11685.1| DNA-binding response regulator [Citreicella sp. SE45]
          Length = 223

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRI +IED++ALAH I   L+    +V   DL  DG E   F      D ++LDL L  +
Sbjct: 1   MRIAVIEDNEALAHGIAFRLRDRGHSV---DLLNDGAEADAFLAQEGADLVVLDLNLPHM 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLRA+R     TPV +L+  S   ++V GL +GADDY++KPF  +EL AR+RA+ R
Sbjct: 58  DGLAVLRAMRRRGDGTPVILLTARSETAERVAGLDAGADDYLTKPFEMDELEARLRAMAR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      +    G L  + +A+ +   G  + +  KE   +E L  R    ++K   ++H
Sbjct: 118 RKDLEFAARERLGALIFDRNARQLFQDGTPLDIPRKEIATLECLLERSGRIVSKAQLISH 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +Y    + +   I+  + +LRK+L         I+T  G GY+L  N
Sbjct: 178 VYGTGSDTDETAIEPHVSRLRKRLEPFG---IRIKTARGLGYMLDVN 221


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   ++V     GE+ +EL      D ++LD+ L  + GF V
Sbjct: 27  ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDGFAV 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  P+  LS + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 87  CRRIRGESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 145

Query: 123 A------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           A            Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 146 ASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVVP 205

Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 238

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD AL   +   L  E + V     GE G+       +   +LD+ L  + GFE
Sbjct: 3   RLLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPRLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R  + S PV +L+      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR   
Sbjct: 63  VLKRIR-QESSLPVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILRRTDP 121

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            SR  + + I+   DLS+N   + V   G  + LT  E+ +++ L+    T + ++    
Sbjct: 122 DSRPASGARILEIDDLSINPANREVRRGGVPVELTAAEFLLLKTLAEAPGTLVGRDELTR 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   R  P  + ID+ +  LR+KL     G   I TV G GY
Sbjct: 182 IVLHRRLTPFDRAIDMHVSNLRRKLGEKPDGSPRIRTVRGSGY 224


>gi|298486538|ref|ZP_07004598.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159015|gb|EFI00076.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 230

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + GH + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G 
Sbjct: 10  FRILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 70  EVCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAV 128

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E
Sbjct: 129 PTTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDRE 188

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
             L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 189 QLLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 236


>gi|116513986|ref|YP_812892.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093301|gb|ABJ58454.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325125674|gb|ADY85004.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal precursor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 225

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   + G+   +       D +ILDL L D  G E+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFEDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV I S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LHRLRSTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+KL  A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQKLGEAG---KHIETVRGVGYRYHE 223


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I++ LK E ++    + GE+ + +    + D IILD+ +  + G E
Sbjct: 5   RILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKVNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  +   P+ +LS  S   DK+ GL +GADDY++KPFN  ELVAR+R+ +RR + 
Sbjct: 65  ACLKIREER-EMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123

Query: 122 H-----AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                  + L+V  D       +S+NL+   V   G  I LT  E+ ++ LL   +    
Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + E   N ++          + V I K+R+K+        +I+TVWG GY
Sbjct: 184 SIENIYNSVWKQEFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGY 233


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPGF 60
           +L+++D+ ++   +E       F+V   D G    E  K    ++D ++LDL L  + G 
Sbjct: 4   VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ +L+      D V GL+ GADDY++KPF+  ELVAR RA++RR+ 
Sbjct: 64  EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123

Query: 121 GH---AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                AQ      ++  G++ +++    V V+G  +  T KE+++++         L+++
Sbjct: 124 SREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L+ ++      + +I+DV +  LR+K+ + +    YI TV G GY   E  
Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTEGT 236


>gi|127514245|ref|YP_001095442.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639540|gb|ABO25183.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 227

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 2/201 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +   L+S+   V     GE G+ L     FDAI+LDL L  + G+ 
Sbjct: 5   QILIIEDNADVAGVLGDYLESQGAQVDYASNGELGLRLATEGHFDAIVLDLMLPKMDGYA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +ALR    S P+ +L+ +   +D ++G  SGADDY++KPF+ +EL  R+ A+++R  G
Sbjct: 65  VAKALRQQGSSVPILMLTALDDKQDLLQGFHSGADDYLTKPFDLDELHVRLLALIKRQLG 124

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ     G L++N+   T    G ++ LT   YQ++ LL  R    + +E  + HL+ 
Sbjct: 125 RVAQGCQQCGPLTLNIAEHTAYRDGKKLQLTPSCYQILHLLISRAPNVVKREEIVQHLW- 183

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
           G + P   I+   + +LR ++
Sbjct: 184 GEEPPNSDILRSHMYQLRNQV 204


>gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 250

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 20/235 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L++ED+ +++  + +  K EN++      G D + +  F E    +D +ILDL L  
Sbjct: 1   MKLLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAM--FNEEPDAWDMVILDLNLPG 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V   +R      P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  LDGMQVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRSRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLR 164
           RRS    Q             + T    +N + +   + G+ I  LT KE+ ++ +L+ +
Sbjct: 119 RRSETAGQPASSEPQVHEDFDVQTRTFKLNSNTREAYLNGNLIQDLTPKEFDLLRVLAKK 178

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    ++E  L  ++D     + + +D  + KLR+K+     G   I+TVWG GY
Sbjct: 179 QRQVFSREQLLQLVWDYEYFGDERTVDAHVKKLRQKIEKV--GPQVIQTVWGVGY 231


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + LK+E +       G + +   +   + + +ILD+ + ++ G
Sbjct: 1   MKILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVKILR-KESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++    L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 TMQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGY 224


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A++ TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RRS
Sbjct: 61  TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-DKPLLHTVHGVGYRLAEG 223


>gi|325262963|ref|ZP_08129699.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032057|gb|EGB93336.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 215

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 120/219 (54%), Gaps = 9/219 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK++   I   ++           G + ++  +    D I+LD+ L DI GFE+
Sbjct: 4   ILIVEDDKSINELIRRTVRMTGHRGLPVHDGREALKAVEQKVPDLILLDMNLPDISGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+  +      PV  ++    I D+VRGL  GADDYI KPF  EELVARI+A +RR +  
Sbjct: 64  LKQWK----QIPVICVTARGEIGDRVRGLNGGADDYIVKPFAVEELVARIQAAMRR-QNK 118

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q+L   G + V+     V  +G  + LT +EY+++++L   KN  L+++  L+  +   
Sbjct: 119 EQTLYQLGSVEVDTSQAVVRKEGIPVELTTREYELLKVLLENKNIALSRDRLLDLAWGMD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + +DV I +LR+KL    G + YI T++  GY L
Sbjct: 179 YCGDDRTVDVHIRRLRQKL----GLEEYIRTIFKYGYRL 213


>gi|299531523|ref|ZP_07044929.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298720486|gb|EFI61437.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 227

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+A +I   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 1   MQVLLLEDDPAIARTICYALEREGIAVTHSLLIADARQQWSRTAFDVLLMDVGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRSR
Sbjct: 61  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSR 120

Query: 121 GHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +       ++ +D   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 121 QFQPTAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  I  LR KL      +  I T  G GY L +
Sbjct: 181 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQ 225


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|157960706|ref|YP_001500740.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845706|gb|ABV86205.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 237

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDFLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            AQ     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PAQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|299069918|emb|CBJ41202.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum CMR15]
          Length = 234

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 5/187 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           FD ++LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+
Sbjct: 45  FDLMLLDLGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFD 104

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
            +EL AR+ A++RR  G A  L+  G++ +N   + V   G  I L+G+E+ ++  L  R
Sbjct: 105 LQELAARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSR 164

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   
Sbjct: 165 PGKVWSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPRE 219

Query: 225 AKDETCE 231
           A     E
Sbjct: 220 APTPPAE 226


>gi|224282831|ref|ZP_03646153.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 224

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 14/225 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E ++  V   G   ++  K    D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            + VA    PV IL+   +  DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RI-VADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERAKV 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSETIRTVHGVGYAF 219


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|307728697|ref|YP_003905921.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307583232|gb|ADN56630.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 224

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 5/177 (2%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           + A +LDLGL    G EVL ++R A I+ PV +L+   ++ D+VRGL  GADDY+ KP +
Sbjct: 45  YAAAVLDLGLPRKDGIEVLSSIRRAGITLPVLVLTARDTVPDRVRGLDIGADDYVVKPVD 104

Query: 105 KEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
            +EL AR+RA+VRR+ G +Q  +   ++++    ++V      + L+ +E+ +++ L L 
Sbjct: 105 LQELAARLRALVRRAHGVSQETLRVQNVALEPATRSVYRNEEPVTLSSREFDLLQTLMLN 164

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E     +Y    E E   ++V I +LR KL     G + I+TV G GYVL
Sbjct: 165 AGRVLSREQLEQAIYGWGQEIESNAVEVHIHRLRTKL-----GSDLIKTVRGVGYVL 216


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E +       G   +   +    D ++LDL L    G +
Sbjct: 17  RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  + + P+ +L+      D V+GL++GADDY++KPF   ELVAR+RA +RR   
Sbjct: 77  ICQDIR-TQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++L + GD+ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++ 
Sbjct: 136 GQAENLSI-GDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R   + ++++V + +LR K+         + TV G GY
Sbjct: 195 YRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGY 233


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGY 231


>gi|283796675|ref|ZP_06345828.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           M62/1]
 gi|291076100|gb|EFE13464.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           M62/1]
          Length = 236

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+ED+  +   I   L S ++ + +   G+D + +      D I+LDLGL DI G 
Sbjct: 5   ISILLVEDEPNICGFITAALASHDYKITLAHTGKDALSIITSLCPDLILLDLGLPDIDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E++R +R    S P+ ++S  +  ++KV  L  GADDY++KP    EL+ARIR  +R S 
Sbjct: 65  EIIRQVRTWA-SIPIIVISARTQEQEKVTALDLGADDYLTKPIGTSELLARIRTAMRHSN 123

Query: 120 RGHAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +  SL+        DL ++ +   V + G+ IHLT  E+++I LL+      +T +  
Sbjct: 124 KLNTDSLLYKRPFQAKDLIIDFEKHLVTLNGNEIHLTQNEFKIISLLAKNSGRVMTYDSI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++    + +  I+ V +  +R+KL        YI T  G GY + E+
Sbjct: 184 IENIWGPYADGDNSILRVNMAHIRRKLEKNPAEPEYIFTEIGIGYRMIED 233


>gi|209809156|ref|YP_002264694.1| putative two-component response regulator [Aliivibrio salmonicida
           LFI1238]
 gi|208010718|emb|CAQ81108.1| putative two-component response regulator [Aliivibrio salmonicida
           LFI1238]
          Length = 228

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED + L  S+ + L +  F +  T  G  G+ +    ++D IILDL L ++ G 
Sbjct: 1   MNILLIEDSEHLRRSLVVGLSNLGFTIDETGDGSKGLSMAITNDYDFIILDLMLPNVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L+++R       V ILS  S  ED+V GL SGADDY+ KPF+ +EL ARI  + RR  
Sbjct: 61  TLLKSIRKMGNDVKVIILSAKSLPEDRVEGLLSGADDYLVKPFSFDELHARILTVGRRGI 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     + + G   ++L  K  E +G  + LT  EY++IE L L KN  +T E   N++
Sbjct: 121 VKNSDDDVNLAG-FRLDLAKKEFEFEGTLVELTKNEYKIIECLFLSKNQVMTTENISNYV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               D      I+  +  +RKK+    GG+  I+   G GY L  N
Sbjct: 180 VGSFDSLSKNTIESHLSSVRKKVK-LLGGEVPIKNKRGFGYYLDRN 224


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++A+   +++ LK   + V     GE+ + +      D  ++D GL D+ G E
Sbjct: 5   KILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDMEGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR      PV +L+   + EDK+  L +GADDY+ KPF   EL+ARIR  +R  +R
Sbjct: 65  VLRRLREWS-QMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    L+++L  + VE+ G  + LT  EY +++ L+      +T+   L H++ 
Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVW- 182

Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +P+     + V+I  LRKKL +       I T  G GY L
Sbjct: 183 GDVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRL 225


>gi|154487500|ref|ZP_02028907.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
 gi|154084018|gb|EDN83063.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
          Length = 224

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 113/225 (50%), Gaps = 14/225 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAF 219


>gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 248

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 123/218 (56%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F  ++   G+  +E  + Y  D ++LDL L    G +
Sbjct: 27  RILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLMLPGKDGID 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R A+   P+ +L+      D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 87  VCKEIR-AESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            AQ  +  GDL++++    V   G RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWGY 205

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+ +       + TV G GY
Sbjct: 206 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGY 243


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   LK+E + +     G+  +E    ++ D ++LDL L  I G E
Sbjct: 3   KILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VCRQIR-KDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            A+           ++I  GDL ++ D       G  + LT +E++++  LS   N  +T
Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+         + T  G GY ++
Sbjct: 182 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGYFVK 233


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA+ I+  L+ E + V +   G+  IE+   ++   +ILDL L  + G+E
Sbjct: 3   RILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+ K + P+ ILS      DKV+GL  GADDYI+KPF   EL+AR+ A +RRS+ 
Sbjct: 63  ICQNIRI-KSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +I   ++ +      VE  G  + L+  E++++  LS       ++E     +
Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      ++  + V I +LR+K+ +      YI TVWG GY
Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGY 222


>gi|134102881|ref|YP_001108542.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915504|emb|CAM05617.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 228

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F   V   G   +   +  + D ++LDL L  + G +
Sbjct: 7   RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCKAIRTESV-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDA 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 EPAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGY 223


>gi|311104682|ref|YP_003977535.1| transcriptional regulator OmpR 2 [Achromobacter xylosoxidans A8]
 gi|310759371|gb|ADP14820.1| transcriptional regulatory protein OmpR 2 [Achromobacter
           xylosoxidans A8]
          Length = 244

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 114/211 (54%), Gaps = 16/211 (7%)

Query: 23  ENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNV+V    ED  E+ K ++   FD ++LDL L    G  + R LR    +TP+ +L+
Sbjct: 32  QGFNVFV---AEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
             +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G 
Sbjct: 89  AKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGP 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKII 190
            ++NL  +T+   G ++ +T  E+ ++++ +      L+++  +  L  GR+ E   + +
Sbjct: 149 YTLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLM-ELARGREYEAFDRSL 207

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LRK +        +I+TVWG GYV 
Sbjct: 208 DVQISRLRKLIEPNPSKPVFIQTVWGLGYVF 238


>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 230

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++A ++    K E + V     GE+ +E    +  D +ILD+ +  + G+E
Sbjct: 4   RILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLTGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +    + +L+  + I DKV GL+ GADDY++KPF+  ELVAR +A+VRR   
Sbjct: 64  VCRKLENRR-GMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A   I  G + VNL  +T+ V    + LT KE+ +I LL        T+E  L+ 
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +D+ + +LRKK+  A      ++TV+G GY
Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEAE--PYLLQTVYGVGY 222


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLR-EKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++    V  +G  I LT KE +++   +       TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++      +   + V I KLRKK+         I+TVWG GY
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGY 234


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +E+ LK+EN+ VY      + +E  +  E D  ILD+ L  + GF 
Sbjct: 4   KILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  ICQKIR-ERYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122

Query: 122 HAQSLIV----TGDLS---VNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRK-NTTLTK 171
           ++    V    T  LS   + LD KT E  + G  + LT  E+ +++LL  +  N    +
Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+F +   D         I V I  LR+KL +      YI+T+WG GY
Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGY 230


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---------YEFDAIILDL 52
           RIL++ED+  +   I L L+ E +++   + G   + L +           EFD +ILDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR   +   + S+    D+ +      V V    I L+ KEY+++EL         
Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++E  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 SREQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGY 249


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++A  I++ LK   + +     G + ++     +FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  +   P+ IL+     +D V G + GADDYI+KPF   EL+AR+ AI+RR  G
Sbjct: 80  ACQRIR-ERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  G++ ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+         I TV G GY + E
Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKMAE 244


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +  ++++ GED ++      FD I+LD+ L  I GFEV
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  ++    P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R   Q ++  G L V++    + + G  + LT  E++++  L  RK    ++E  L+ 
Sbjct: 126 RQRAGLQEVLSAGGLDVDITRHQITLDGKGVILTLMEFKLLVALLKRKGQAQSREALLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D       + ID  I +LR+KL         I+TV G GY   E  +
Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KMIKTVRGLGYKFDEPGE 231


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  +  S+   L+   F V+     EDG+ L K    D ++LD+ L  + G + 
Sbjct: 5   ILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMDGLDA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R  ++  PV  ++      D+V GL+ GADDYI+KPF+   L+ARI+A++RR  G 
Sbjct: 65  LRRFR-EEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSGG 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q L++ G+L ++  A TV   G  + L+ +E+ ++  L+L     +  +  L
Sbjct: 124 EERKPAEPQPLLI-GELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E +++ V I  LR+KL +     +YI TV G GY L
Sbjct: 183 ARVWGAEFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKL 228


>gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
 gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           R+L++ED+ ++   + L LK   + V      E  +EL  K    DA +LD+ L  + G 
Sbjct: 3   RVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +   +R       + I+S      DK+RGL  GADDYI+KPF+  ELVAR+ A+ RR  
Sbjct: 63  SLCETIRRDDNDIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALTRRIK 122

Query: 120 RGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RG +          +V+G   ++  ++ +   G  I LT  E+Q++EL      T L +E
Sbjct: 123 RGSSSPKAAEEPEQLVSGPFVLDEKSRVLYKAGKPIDLTQVEFQIMELFFRNPATALVRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +VKI+DV I +LR K+ +      +I TVWG GY  R NA
Sbjct: 183 KILEGVWGENYFGDVKIVDVNIRRLRMKIEDEPSNPQHILTVWGYGY--RWNA 233


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++A+   ++  L+ E +NV +   G +G+E  + Y  D I+LDL L  + GF V
Sbjct: 15  ILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMNGFSV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
             A+R  +   P+ +L+ +     +++G  + ADDYI+KPF+   +V  I A++RR+   
Sbjct: 75  CEAIR-KESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQG 133

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++   DL+++ D+ TV V+   + LT +E+++++LL   +    T+E  L+ ++
Sbjct: 134 AGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSIW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLREN 224
                 + KI++  I  +RKKL     G +YIET+ G GY + +EN
Sbjct: 194 GYDYFGDEKIVNTHIKNIRKKL-----GVDYIETIRGAGYKIEKEN 234


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR  + 
Sbjct: 71  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKE 129

Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           HA  +  TG     DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 HAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V+    GE+ +E  K  + D I+LDL L  + G +
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R     TP+ ++S   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  + +  ++ G+L +N           ++ LT +E++++  L+      +T+E  
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY +
Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|308186053|ref|YP_003930184.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
 gi|308056563|gb|ADO08735.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
          Length = 224

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   + L L++E+  V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 4   VLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGLIEAATRKPDLVILDLGLPDGDGTDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +R LR    + PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  G 
Sbjct: 64  IRDLRQWS-AIPVIVLSARSDEQDKIAALDAGADDYLTKPFGVGELLARVRVALRRHGGQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ I   D+SV+  A+ V+  G  IHLT  E++++ +L       LT+   L+ ++  
Sbjct: 123 QPEARIQFADVSVDFAARRVQRGGSEIHLTPIEFRLLSILLNNAGKVLTQRQLLSQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL        ++ T  G GY
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTRPAHLLTETGIGY 220


>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 124/230 (53%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++ ++    V +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEMQ-SRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GDL ++   + V ++  +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEE 233


>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 384

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L  E + VY    G+D +EL K    DA+ILD  L DI G ++
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225

Query: 63  LRALRVAKISTPVCIL-SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R LR  ++  PV I+ +G     D+V GL++GADDY+ KPFN  EL+AR+ A +RR   
Sbjct: 226 CRRLR--ELINPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTS 283

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++T  D+++    +        + LT  E+ ++ L        L KE+ L  ++ 
Sbjct: 284 SPEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWG 343

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++ I++V+I  LR+KL   +     I TV G GY+  + 
Sbjct: 344 HNFTGDLNIVEVYIGYLRRKLQKPS----LIHTVRGVGYLFEQQ 383


>gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 216

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 212


>gi|255531093|ref|YP_003091465.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344077|gb|ACU03403.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 225

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+K L   +   L  E + +          E      +D I+LDLGL    GF
Sbjct: 1   MNILIVEDEKNLGLEMADFLGKEGYTIEHAWKKASAEEKIFVNSYDFILLDLGLPGGDGF 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+L  L+ +      V IL+    ++D+++GL++GADDY++KPF+  EL+AR+ AI+RR 
Sbjct: 61  ELLHQLKKMPGREDAVIILTARGEVDDRIKGLEAGADDYLAKPFSLTELLARMHAIIRRK 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   D  +++    V  +G R++LT KE+++   L L KN  +++     H++
Sbjct: 121 HKLERNEVNVHDFILDIKNHQVSFEGKRVNLTNKEFEIFNYLVLNKNRVISRVNLTEHVW 180

Query: 180 DGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   +   +DV +  LRKKL+ A    N+ ETV   GY
Sbjct: 181 GDILEVNSDSNFVDVHVKNLRKKLT-AYATINWFETVRSIGY 221


>gi|241666669|ref|YP_002984753.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862126|gb|ACS59791.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 230

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V          +       D I+LDLGL D  G 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVREAPNAAAARQSVADDMPDLIVLDLGLPDTSGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQVWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V+G  I L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVEGAEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V++ +LR+K+       +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLRE 228


>gi|28379053|ref|NP_785945.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557185|ref|YP_003063602.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308181246|ref|YP_003925374.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271891|emb|CAD64796.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046112|gb|ACT62905.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308046737|gb|ADN99280.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+K+++  + +  K E ++ +    G + +E+  F E    +D + LDL L  
Sbjct: 1   MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEM--FNEDVDGWDMVTLDLNLPG 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +V   +R A  + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  KDGMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRS-------RGHAQSLIVTGDLSVN---LDAKTVE--VQGHRIH-LTGKEYQMIELLSL 163
           RR+            S + + D+  +   L+ KT E  +   +I  LT KE+ +++ L+ 
Sbjct: 119 RRADLAKTTPADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIQDLTPKEFDLLKTLAQ 178

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++D     + + +D  I KLR+K+  A  G   I+TVWG GY   +
Sbjct: 179 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDD 236

Query: 224 NAKD 227
           +  D
Sbjct: 237 SGVD 240


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|314934896|ref|ZP_07842255.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87]
 gi|313652826|gb|EFS16589.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87]
          Length = 233

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 115/204 (56%), Gaps = 3/204 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+A+ H I++ L    + V     G +     +    D I+LDLGL DI G  +
Sbjct: 5   LLVVEDDEAILHLIDVALTMSYYKVIKAKTGREADFRIRTEHPDIILLDLGLPDIDGLSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ LR   + TP+ ++S  +  E  V+ L  GA+DY++KPFN +EL ARIR  +R S+  
Sbjct: 65  IKRLREC-VDTPIIVISARTEEETIVKALDYGANDYMTKPFNIDELQARIRVALRVSKRP 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+    G L ++    +V + G  IHLT  E+Q++E+LS      LT ++ L  L+ 
Sbjct: 124 DTMQNNFENGPLIIDFSGNSVYMMGQAIHLTPYEFQLLEILSQHVGKVLTYQVLLKALFG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA 204
             ++ ++  + V +  LRKKL+N+
Sbjct: 184 YVNKCDMSSLRVHMASLRKKLNNS 207


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDDK +A      L++  F V +   G  G +       D I+LD+ L    GF+
Sbjct: 3   KVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ ++S      DK+RGL  GADDYI KPF+  ELVAR+++ + R   
Sbjct: 63  VCREIRAEK-DIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQ 121

Query: 119 --SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +R  ++  ++  G+L ++L +  V +Q   I L  KE++++  L+       +K+   
Sbjct: 122 LTNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I ++R+K+   +    YIETVWG GY  R
Sbjct: 182 ERVWGEDSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRFR 228


>gi|197285555|ref|YP_002151427.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis HI4320]
 gi|227356052|ref|ZP_03840443.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis ATCC 29906]
 gi|194683042|emb|CAR43534.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis HI4320]
 gi|227163829|gb|EEI48737.1| swarming motility regulation two-component system, response
           regulator [Proteus mirabilis ATCC 29906]
          Length = 221

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M ILL+EDD  L  ++   L+   F   +V  L +  ++L +   FD ++LDLGL D  G
Sbjct: 1   MNILLVEDDLQLGKALCRGLEIAGFQPCWVRLLADARVQLNQ-KAFDLMLLDLGLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L ALR +    P+ IL+  + I++ V+ L SGADD++ KPF   EL++R++A+ RR 
Sbjct: 60  QDELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRM 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +  +   GDL +N     V + G  + L+GKEYQ++  L    +  + K      L+
Sbjct: 120 AGFSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D+ E   ++V +  LR+K+     GK  I TV G GY+L++
Sbjct: 180 GLDDKIESNSLEVHMHNLRRKI-----GKERIITVRGIGYLLKK 218


>gi|52840952|ref|YP_094751.1| two component response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54293699|ref|YP_126114.1| hypothetical protein lpl0752 [Legionella pneumophila str. Lens]
 gi|52628063|gb|AAU26804.1| two component response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53753531|emb|CAH14986.1| hypothetical protein lpl0752 [Legionella pneumophila str. Lens]
 gi|307609509|emb|CBW99007.1| hypothetical protein LPW_07921 [Legionella pneumophila 130b]
          Length = 223

 Score =  115 bits (287), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F+      G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFHADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+ARI++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARIKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KENPILLKIDDLTLNLQKHTAIRGEKKLPLTAKEFMLLTFMLKRNGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    IIDV I +LR+K+ N    K  I TV G GYVL
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVL 220


>gi|299822847|ref|ZP_07054733.1| response regulator [Listeria grayi DSM 20601]
 gi|299816376|gb|EFI83614.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   +EL    E         G++G++     +++ +I+DL L  + G 
Sbjct: 1   MKLLMIEDNHSVCEMMELFFMKETITATFIHDGQEGLDRFLEEDWEFVIIDLMLPSLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R A    P+ IL+   S  D+V GL+ GADDY+ KPF+   L+ARI+A+ RR  
Sbjct: 61  TICKKIREAS-DVPIIILTAKESESDQVLGLEMGADDYVIKPFSPITLLARIKAVKRRHH 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   S+I T D  V+L  + V   G  +  LT KE+ ++           ++E  L
Sbjct: 120 KVEGSQPSSIIRTKDFVVDLQTREVLHLGKPLGALTPKEFDLLYFFLQHPRQVFSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++  +   + + +DV I +LR+K++N    ++Y+ T+WG GY   E A D+
Sbjct: 180 EQVWGYQFYGDERTVDVHIKRLRQKIANQK--QHYLFTIWGVGYKFEEVADDQ 230


>gi|260588929|ref|ZP_05854842.1| transcriptional activator protein Irlr [Blautia hansenii DSM 20583]
 gi|331083346|ref|ZP_08332459.1| hypothetical protein HMPREF0992_01383 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540708|gb|EEX21277.1| transcriptional activator protein Irlr [Blautia hansenii DSM 20583]
 gi|330404427|gb|EGG83972.1| hypothetical protein HMPREF0992_01383 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 220

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K ++  I+L LK   +       GE   ++ +   +D I+LD+ +  I GF
Sbjct: 2   VNILIVEDEKPISDLIKLSLKGAGYFCSCVYDGETAADMIEENRYDLILLDIMIPYIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  ++   I  PV  ++ M+SI+D+V+GL+ GA+DYI KPF   EL+AR+  ++RR  
Sbjct: 62  ELLEYIKPFDI--PVIFITAMNSIDDRVKGLKMGAEDYIVKPFEVVELLARVEVVLRRFH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  + +   L++NL    V      + LT KEY ++ L +   N  L +E     ++ 
Sbjct: 120 KTSDIIQINDKLTINLKQHVVRYDEQEVALTPKEYDLLVLFAQNPNVALYRETIYERVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G  E   K +D+ + +LR+K    A  ++ I+ V   GY L   A
Sbjct: 180 GNLEYTSKTVDLHVQRLRRK----AHLEDMIKAVNKVGYRLEMRA 220


>gi|152987017|ref|YP_001349316.1| two-component response regulator PfeR [Pseudomonas aeruginosa PA7]
 gi|150962175|gb|ABR84200.1| two-component response regulator PfeR [Pseudomonas aeruginosa PA7]
          Length = 240

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  L   ++   +   F+V V   G  G+E      FD ++LD+ L  + G  
Sbjct: 14  RLLLVEDDPRLREDLDAHFRQRGFHVTVCGDGSHGLEAAGREAFDLVLLDIMLPGLDGLA 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  + +TPV ++S + + +D++ G   GADDY+ KPF+  EL AR  A++RR R 
Sbjct: 74  LLESLRREQ-ATPVMLMSALGAEQDRISGFTRGADDYLPKPFSLAELDARTDALLRRVRL 132

Query: 122 HAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF----L 175
             Q      D  +  D +  EV  +G    LT  EY+++ +L       L+K       L
Sbjct: 133 DRQPPAPRQDTRLAFDEQAREVFHEGLPAGLTPSEYRLLAILREHAGEALSKPFLYRSVL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  Y   D    + +DV +C LR+KL+  A     I+ V G+GY+L E  +
Sbjct: 193 HRNYTRLD----RGLDVHVCNLRRKLAAIAVRHLQIQAVRGQGYLLVETER 239


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ L  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVMLPGMDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR    
Sbjct: 66  CRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 119 ---------SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     RG A+  L+V GDL V+ +   V   G  + LT  E +++   S    T 
Sbjct: 125 GGAESPDPEGRGQAERGLLVFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY L+
Sbjct: 185 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLK 233


>gi|313204020|ref|YP_004042677.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
 gi|312443336|gb|ADQ79692.1| two component transcriptional regulator, winged helix family
           [Paludibacter propionicigenes WB4]
          Length = 231

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+I+D+  +   +E+ L + +++  +    ++GI     +  D I+LDLGL D  G 
Sbjct: 5   MNILIIDDEVQIQKLLEITLNNNDYHTLIASTAKEGISTAVIHPPDLIVLDLGLPDEDGQ 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR   +   + ILS  SS ED +R L +GA+DY++KPF   EL+ARIR  +R+++
Sbjct: 65  SVLIKLREWYLGA-IIILSVRSSEEDIIRALDNGANDYLTKPFRTGELLARIRTALRQTQ 123

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +  D LS++L ++TV +    + LT  EY ++ LL+      LT +  L  ++
Sbjct: 124 LNPTVQKLEFDNLSIDLTSRTVTLDNESLKLTATEYSLLTLLAKNDGKVLTHQYILKQIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + + VF+ +LRKK+        +I T  G GY
Sbjct: 184 GPGYTQQSQYLRVFVGQLRKKIEPNPNNPKFILTESGIGY 223


>gi|254467591|ref|ZP_05081000.1| two-component response regulator [Rhodobacterales bacterium Y4I]
 gi|206684339|gb|EDZ44823.1| two-component response regulator [Rhodobacterales bacterium Y4I]
          Length = 223

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      ++  L+ E     +   G +G+      E+D +I+D  L  + G 
Sbjct: 1   MKILVIEDDATTGPYVQAGLREEGHTADLVTDGREGLLQATAAEYDVLIIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A + TP  +L+ +S + D++ GL++GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  SLIKTLRGAGVRTPAIMLTALSGVNDRIDGLEAGADDYLVKPFAFGELAARVAALARRPG 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++  GDL ++L  + V   G  I L  +E++++E L  RK    T+ M L  ++
Sbjct: 121 LQEQETVLRAGDLEMDLIRRKVTRAGQEIDLLPREFRLLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   +P+  +++  I +LR K+     G   IETV G GY
Sbjct: 181 DISFDPQTNVVETHISRLRAKVDKPF-GTELIETVRGAGY 219


>gi|194366239|ref|YP_002028849.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349043|gb|ACF52166.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 224

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  LA +++  L+ E + V + +      E   +   D ++LD  L D  G 
Sbjct: 1   MHILLIEDEAELAATLKSALQRERYVVDLANTLALAREAALYGSHDLVLLDRTLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      P+ +LS +  + D++ GL  GADDY++KPF  EEL ARIRA  RR  
Sbjct: 61  GLISLLRERNPGVPIIVLSALGQLPDRIAGLDEGADDYLAKPFALEELFARIRAAGRRPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G L  +  +    V G R+ L  +E +++  L+ R   T+ +E     +Y 
Sbjct: 121 GMQVELVSIGRLVFDPASGEASVGGQRLELPRREIRVLTALARRLGRTVLRESIEMAVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D      +D  + +LR+KL++ A  +  I  + G GY++RE
Sbjct: 181 FDDGIHSNTLDSHVSRLRRKLAD-ADARVEIHAIRGVGYLMRE 222


>gi|187934991|ref|YP_001884341.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
 gi|187723144|gb|ACD24365.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund
           17B]
          Length = 227

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILLIED+  ++ +I     +E FN+     G D I+    Y +D +ILDL L ++ G 
Sbjct: 2   ISILLIEDNIEISRNIVEYFGNE-FNIKAVYDGSDAIQYLDTYSYDIVILDLMLPEVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +    ++T V IL+    + DK++    GA+DY++KPF  EEL ARI AI++   
Sbjct: 61  SVLSYMSKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKSMG 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +S I+   ++ +++  K V +    + L  K Y+++E L + K   L KE   +++ 
Sbjct: 121 KIKKSNILEFKNMQIDMKVKKVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNIC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   +II+V+I +LRK+LS     K Y+ T  G GY+L E+  D
Sbjct: 181 GYNSDAATEIIEVYISRLRKQLSKYDYDK-YLVTKRGMGYLLDESIGD 227


>gi|167562133|ref|ZP_02355049.1| DNA-binding response regulator KdpE [Burkholderia oklahomensis
           EO147]
          Length = 232

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPLVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLAALVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRL 228


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+K + +SI  +LK E + V     G + + L +    D I+LD+ +  + G   
Sbjct: 12  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR  K   PV ILS  +   DKV GL  GADDY+ KP+N  EL+AR++A +RR R  
Sbjct: 72  LMKLR-EKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 130

Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              L       I+ G L ++   + V V+G  + LT  EY+++ELL        + E   
Sbjct: 131 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 190

Query: 176 NHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       V+  + V I  +R+K+   A    Y++ VWG GY
Sbjct: 191 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGY 235


>gi|254228780|ref|ZP_04922203.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396500|ref|YP_003288353.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151938727|gb|EDN57562.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262340094|gb|ACY53888.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 243

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKAQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++ +           G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGY 237


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +EL L ++ F+V      +D ++L +   FD +ILD+ L D+ GF 
Sbjct: 4   KIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLEDMDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E++AR++  +RRS+ 
Sbjct: 64  VCKKIR-EKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + ++  +  D + ++    ++ + H+       I LT  E+++I  L   +   ++ E  
Sbjct: 123 YNKTEKIKDDETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  +       +   I ++R K++++     +I+TVWG GY
Sbjct: 183 FENIWKEKYLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGY 227


>gi|300813010|ref|ZP_07093393.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300495980|gb|EFK31119.1| putative DNA-binding response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 225

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + I  +EDD+++       L+S NF V   D G+   +  +    D +ILDL L D  G 
Sbjct: 2   IEIWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALENSRPDLVILDLMLPDEDGS 61

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++L  LR    +   PV I S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR
Sbjct: 62  KILHRLRSTSATEDLPVIIASAKAAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +
Sbjct: 122 TNRKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     E + +DV +  LR KL  A     +IETV G GY   E
Sbjct: 182 WETGFYGETRTVDVHVRTLRHKLGEAG---KHIETVRGVGYRYHE 223


>gi|190149943|ref|YP_001968468.1| CpxR family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915074|gb|ACE61326.1| transcriptional regulatory protein CpxR [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 242

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 123/237 (51%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +  +L  E F ++    G+D +   +   +D I+LD+ +  +   E
Sbjct: 3   RILLVDDDIELTELLAELLSLEGFEIHCVHNGQDALTELELQSYDLILLDVMMPVLNSIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKHSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
           +  S   +I   + S   ++K +   G  +H              LTG E+ ++++L   
Sbjct: 122 NILSNPDVITYSNQSPEENSKQLSFGGVELHPGRQQAIFEGRDLDLTGTEFALLQMLMRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|197124306|ref|YP_002136257.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174155|gb|ACG75128.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 227

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +A  +   L  E   V V   G    E      +D ++LD  L D+ G 
Sbjct: 1   MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   + TPV +L+   S  +KV GL++GADDY+ KPF+ +EL+ARI A+ R  R
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHR--R 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G ++++   + + V      LT +EY ++  L+      L++   +  ++ 
Sbjct: 119 GGATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    ++DV++  LR KL         IE+V G GY L
Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAVGVRIESVRGVGYRL 219


>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  114 bits (286), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E ++V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1]
 gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1]
          Length = 227

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE G+EL     +D I+LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ I++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +   +  D+ ++L AK V +Q   ++LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKID---VDNKYIHTIRGFGYMFQ 223


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
           protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 225

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 128/223 (57%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++  L+ E F  Y    G + ++  +  + D +ILDL L D  GFE
Sbjct: 4   KILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDTDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +    +   + + IL+   + EDK+ GL+ GADDYI+KPFN  EL+AR++A++RR + 
Sbjct: 64  LCKLF--SSTDSMLLILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRRRKK 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + S   +  G+L ++     V ++G  + LT KE+ +++ L  ++   +++E  ++ +Y
Sbjct: 122 LSLSGETLRVGELEIHTGEMKVLLKGRLVDLTPKEFLILKKLLSKRGKVVSREEIVSEIY 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGY 219
            G      +I+D +I ++R KL      ++Y   I+TV G GY
Sbjct: 182 SGDIPYYERIVDTYIYRIRTKLMEIE--RSYAERIKTVRGFGY 222


>gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
 gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
          Length = 246

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K L   I   L    + V V + GE+ +++     +D I+LDL L  + G 
Sbjct: 21  VRLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGM 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S I DK+ GL +GA+DY+ KPF+ +EL AR+R++ RR  
Sbjct: 81  EILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRKF 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    +  ++  +    + + + LT KE  ++E L L +   +++E  + H++D
Sbjct: 141 IQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVWD 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     I V +  LR+KL  A  G + I    G GY +  ++K
Sbjct: 201 SSVDSFSGSIRVHMSSLRRKLK-AGLGYDPIVNRIGEGYKIGGDSK 245


>gi|157371577|ref|YP_001479566.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157323341|gb|ABV42438.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 224

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L+H ++  L    F V V   G     L     +  ++LD+ L  + G 
Sbjct: 1   MRLLLVEDHPELSHWLQKALTGVGFAVDVAPDGLAADHLLLNESYALVVLDVALPRLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR      PV +L+  + + D+V+GL  GADDY++KPF  +EL ARIRA++RRS 
Sbjct: 61  ELLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G L+ + D    ++    + LT +E  ++  L  R+   + K+     ++ 
Sbjct: 121 GVTQQALQYGALTYH-DEGYFQLDDKPLQLTPRELAVLTALIHRRGRPVAKQQLFEQVFT 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE   + I++++ +LRKKL    G    I T+ G GY L
Sbjct: 180 LSDEANPESIELYVHRLRKKLQ---GSNVAIITLRGLGYSL 217


>gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 12/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +I++ L+ E  NV     G + +E+    +   ++LD+ +  + G   
Sbjct: 8   VLVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R ++ + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 68  CLKIRESR-NIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +R + Q LIV  DL+++   K V ++G  I LT  EY+++ LL+       + +     
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 178 LYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +EP  K    + V I ++R+K+   +    YI+ VWG GY
Sbjct: 187 VW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGY 228


>gi|260583849|ref|ZP_05851597.1| nisin biosynthesis regulatory protein NisR [Granulicatella elegans
           ATCC 700633]
 gi|260158475|gb|EEW93543.1| nisin biosynthesis regulatory protein NisR [Granulicatella elegans
           ATCC 700633]
          Length = 233

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 127/221 (57%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+++DD A+   I+ +L+S+NF V   T + E  I++C F  +D IILD+ +    G 
Sbjct: 14  KVLVVDDDIAILRLIKNVLESKNFVVDTRTTIPE--IDICHFIGYDLIILDIMMPH-DGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + +R   I  P+  L+  +  ED V G+QSGADDYI+KPF+  ELVAR++  +RR  
Sbjct: 71  EICKYIR-EFIPVPIIFLTAKNLEEDIVYGIQSGADDYITKPFSIPELVARVQMHIRREV 129

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++  ++  G L+++   + + +    I  T +E+Q+I LLS   N   + E   ++L
Sbjct: 130 RNNNSSEILQFGALAIDKTKEELRIADIHIPTTKREFQLILLLSSNPNRIFSNEELFDYL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E + + I  ++ ++R+KL       N I+T+WG GY
Sbjct: 190 YPHDSETQGRSITEYVYQIRQKLKPYE--INPIKTIWGGGY 228


>gi|255034266|ref|YP_003084887.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254947022|gb|ACT91722.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+     SI   L+   + V +   G  G +L +   +  II D+ +  I G 
Sbjct: 1   MKLLLIEDEPKTLQSIRQGLEENGYEVDIAYDGLIGKQLARGNVYQLIISDIIIPGINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +R     TP+ +L+ + + +DKV GL +GADDY+ KPF  +EL+AR+RA+ +R  
Sbjct: 61  ELCREIRSWGDETPILMLTALGTTDDKVTGLDAGADDYLVKPFEFKELLARVRALTKRGT 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   ++   DL V+LDAKTV   G++I+LT +E+ ++  L   +   ++K      +
Sbjct: 121 TVSHTAQVLRFADLEVSLDAKTVYRSGNKINLTAREFNLLVYLIRNQGRVISKVEIAEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +    +I+V++  LRKK+      K  I T +G GYVL+
Sbjct: 181 WDIGFDTGTNVIEVYVNYLRKKIDKDYPVK-LIHTQFGMGYVLK 223


>gi|30248676|ref|NP_840746.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30180271|emb|CAD84578.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding domain [Nitrosomonas
           europaea ATCC 19718]
          Length = 228

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ +D +   + I   L      V   D G + +       +DAI+LD  L  + G 
Sbjct: 5   MRVLVADDHEETLNFIRRGLTQAGHIVSTVDNGREALFRATEESYDAIVLDRMLPGLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   I TPV +L+ M+ I D+V GL++GADDY+ KPF   EL AR+  I+RR  
Sbjct: 65  SILKMLRAGGIRTPVLLLTAMTRIADRVEGLENGADDYLVKPFAFSELHARLNVIIRRPA 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   D+ ++L  +     G RI L  +E  M+E+L    +  +TK M L  ++
Sbjct: 125 VLEPETSLRVLDIELDLGKRIARRGGRRIDLQPRELLMLEVLLRNPHRVMTKTMLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  I++  I +LR KL NA   ++ I TV G GY++R
Sbjct: 185 DFDFDPQTNIVETHISRLRAKL-NADFDQDAIITVRGAGYMIR 226


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+++DD+A+  S+    +S  ++ Y  D   DG+E          DA+I+D+ +  +
Sbjct: 3   MHILVVDDDRAVRESLA---RSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ R
Sbjct: 60  DGLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTR 119

Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RSR       A   +   DL+++   + V     RI LT  E+ ++ +        L + 
Sbjct: 120 RSRPEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERS 179

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE
Sbjct: 180 WLLHEVW-GFDFPTTANSLEVYIGYLRRK-TEHDGEARLIHTVRGVGYVLRE 229


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA+ I+  L  E + V +   G+  IE+   ++   +ILDL L  + G+E
Sbjct: 3   RILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+ K + P+ ILS      DKV+GL  GADDYI+KPF   EL+AR+ A +RRS+ 
Sbjct: 63  ICQNIRI-KSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +I   ++ +      VE  G  + L+  E++++  LS       ++E     +
Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      ++  + V I +LR+K+ +      YI TVWG GY
Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGY 222


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++++A  IE+ LK+E F +Y    G+D +   +  + +  ILD+ L DI GF
Sbjct: 3   INILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R  K + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  TICQKIR-EKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L ++++     +   ++ LT  E+ ++ +L   +   ++ E 
Sbjct: 122 KYNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEE 181

Query: 174 FLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + ++ D         + V I  LR+KL ++A    YI+TVWG GY
Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGY 228


>gi|300690088|ref|YP_003751083.1| response regulator (OmpR family) in two-component regulatory system
           with KdpD, regulation of potassium translocation
           [Ralstonia solanacearum PSI07]
 gi|299077148|emb|CBJ49771.1| response regulator (OmpR family) in two-component regulatory system
           with KdpD, regulation of potassium translocation
           [Ralstonia solanacearum PSI07]
          Length = 234

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L++E   V+  D  E G+      + DA+ILDLGL D  G  +
Sbjct: 12  VLVIDDEPHIRRFVRAALEAEGCEVFEADRVERGLIEAGTRQPDAVILDLGLPDGDGMSL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   EL+AR+R ++RR   R
Sbjct: 72  IRDLRTWT-EVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+I  GD+ V+L  + V   G  +HLT  EY+++ +L  R+ T +T    L  ++
Sbjct: 131 GEDGGSVIAFGDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGY 230


>gi|238760430|ref|ZP_04621568.1| Transcriptional regulator in 2-component system [Yersinia aldovae
           ATCC 35236]
 gi|238701325|gb|EEP93904.1| Transcriptional regulator in 2-component system [Yersinia aldovae
           ATCC 35236]
          Length = 264

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L        ++  + +    G E
Sbjct: 35  KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIM-MPRKNGIE 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 94  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 152

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 153 SEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 212

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 213 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 260


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   +   L  + + V     GE+ +++  +  + D IILD+ +  + G
Sbjct: 10  LKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPKMDG 69

Query: 60  FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +E  R +R  KIS  P+ +L+  S   D++ G + G D+YISKPF+   LVAR+ AI+RR
Sbjct: 70  WEACREIR--KISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRR 127

Query: 119 SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    Q  I   GD+ +N  A  V V+G  I L+ KE++++      K   L++E  LN+
Sbjct: 128 TNNIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     + + ID  + KLR KL     GK YI T+WG GY    N
Sbjct: 188 VWNYDYFGDARTIDTHVKKLRNKLGEC--GK-YIVTIWGMGYKFEVN 231


>gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDDK L   I ++LK     V       + + L     F+ I+LD+ L D  G E
Sbjct: 3   RILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINLPDRSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  ++   + +D V G  +G DDYI+KPF+ E +  RI+A++RR+  
Sbjct: 63  LCNEIR-KKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S+  +G++S+N +   V      + LT  EY+++ LL+      LT+++ L  L+ G
Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLW-G 180

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            DE  V    + V + +LR+K+ +      YI+TV+G GY   E    E+C
Sbjct: 181 TDEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGE----ESC 227


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  I   L++ +F       G   I L +    D +ILDL L    G +
Sbjct: 5   RILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLPGRDGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +++      D++ GL++GADDY+ KPF+  ELVAR++A++RRS G
Sbjct: 65  ICRELR-GFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAVLRRS-G 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L     L  +  +      G  + LT  E+++++ L  R    LT+E  +NHLY+ 
Sbjct: 123 KPPPL---PGLLTDPASYRAYCNGIPLDLTPVEFRLLDALLARPGQALTREQLMNHLYED 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + +D  +  LR+KL  AA G++ I +++G GY L
Sbjct: 180 HRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCL 219


>gi|22125379|ref|NP_668802.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45442400|ref|NP_993939.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597038|ref|YP_071229.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808182|ref|YP_652098.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|108811547|ref|YP_647314.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145599382|ref|YP_001163458.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149365137|ref|ZP_01887172.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162419859|ref|YP_001607146.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165926850|ref|ZP_02222682.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936048|ref|ZP_02224618.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011209|ref|ZP_02232107.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212464|ref|ZP_02238499.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398895|ref|ZP_02304419.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422720|ref|ZP_02314473.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424434|ref|ZP_02316187.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023666|ref|YP_001720171.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896121|ref|YP_001873233.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930047|ref|YP_002347922.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|229838590|ref|ZP_04458749.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895658|ref|ZP_04510829.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|229899156|ref|ZP_04514299.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901816|ref|ZP_04516938.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|270490006|ref|ZP_06207080.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504751|ref|YP_003568813.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|21958263|gb|AAM85053.1|AE013751_5 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45437265|gb|AAS62816.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590320|emb|CAH21957.1| putative two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775195|gb|ABG17714.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780095|gb|ABG14153.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|115348658|emb|CAL21602.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|145211078|gb|ABP40485.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149291550|gb|EDM41624.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162352674|gb|ABX86622.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165916193|gb|EDR34800.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921201|gb|EDR38425.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989887|gb|EDR42188.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206395|gb|EDR50875.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958427|gb|EDR55448.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051399|gb|EDR62807.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056316|gb|EDR66085.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750200|gb|ACA67718.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699147|gb|ACC89776.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681745|gb|EEO77839.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|229687558|gb|EEO79631.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694956|gb|EEO85003.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701464|gb|EEO89492.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|262362813|gb|ACY59534.1| putative two-component system response regulator [Yersinia pestis
           D106004]
 gi|262366737|gb|ACY63294.1| putative two-component system response regulator [Yersinia pestis
           D182038]
 gi|270338510|gb|EFA49287.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355210|gb|ADE65551.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|320014446|gb|ADV98017.1| putative two-component system response regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 227

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   ++  L  E F       G+ GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I  G L++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 120 EQPTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRIR 227


>gi|197303422|ref|ZP_03168461.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC
           29176]
 gi|197297420|gb|EDY31981.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC
           29176]
          Length = 220

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED+K L  ++   L S  + V     GE+ ++     E+D I+LDL L  + G ++LR 
Sbjct: 1   MEDEKELCDTVAKSLYSAGYEVDTCYDGEEALDYVLTEEYDLIVLDLNLPGMDGMDILRE 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR+    T V ILS  S I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR       
Sbjct: 61  LRMKNEETKVLILSARSQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFIQKDV 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
            +  GD+  +   +     G  + LT KE  ++E + L +   +++E  + H++D   + 
Sbjct: 121 CLSYGDIRFDTKKREACANGEPVSLTRKENGILEYMLLNQGRPVSQEELIEHVWDASVDS 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               I V +  LR+KL  A    + I    G GY L    K
Sbjct: 181 FSGSIRVHVSSLRRKL-KAVLSYDPIVNKIGEGYRLERKEK 220


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++   L+++++ V+    G + +        D I+LD+ +  + G  V
Sbjct: 10  LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPALDGLAV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR A   TP+  L+  ++ +D++ GL +GADDY+ KP++  EL ARIRA++RR+R  
Sbjct: 70  CRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTRDV 129

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   DL+++ +A    V+G R I  +  E+ ++ LL       LT+E+  + ++  
Sbjct: 130 GGDRLAFADLTLD-EATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWGY 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              P    +DV++  LR+KL  A G    + TV G GY LR
Sbjct: 189 DFGPSSNSVDVYVRYLRRKL-EADGEPRLVHTVRGIGYQLR 228


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 208

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 97/180 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL  ED+ AL       LK+E F V     G + ++     ++D +ILD+ +  I G 
Sbjct: 1   MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV +L+   ++ D+V GL +GADDY++KPF   EL ARIRA++RR+ 
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +        DL+V    + V   G  I L+ +E+ ++E L   K   L++    N ++D
Sbjct: 121 DNKTDTASMADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 18/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--------------KFYEFDA 47
           ++LL+ED++ +  ++ L L  E F V V D G+  +E+                  +   
Sbjct: 19  KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           IILDL L  + G ++ R +R   I  P+ ILS   +  D+V GL+ GADDY++KPF   E
Sbjct: 79  IILDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRE 138

Query: 108 LVARIRAIVRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           L+AR RA++RR     + + +S++   D++++ D   V +    + L+ KE++++ELL  
Sbjct: 139 LIARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLS 198

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     ++   ++ ++      + K +DV I  LR+KL    G   Y++TV G GY L
Sbjct: 199 QPKRVWSRNQIIDQVWGYDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256


>gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16]
 gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A +I   L+++        LG   +E  +    D +ILD+GL D+ GFE
Sbjct: 8   RILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALERMRAGAADLVILDVGLPDLSGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV  L+      D++ GL+ GADDY+ KPF+  EL AR+RAI+RR+RG
Sbjct: 68  VCRTLRTFS-NAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+S  V G  + + D   +  +G  + LT  EY ++  L        ++   +  
Sbjct: 127 GGATAAKSDEVAG-FTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMEC 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVL 221
           +++   +   + +D  I  LR KL  A A G   I T  G GY L
Sbjct: 186 VWEDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSL 230


>gi|33598295|ref|NP_885938.1| two component response regulator [Bordetella parapertussis 12822]
 gi|33566853|emb|CAE39068.1| two component response regulator [Bordetella parapertussis]
          Length = 217

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 3/178 (1%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           E+DA+++DL L D  G  +LR +R     TPV +L+   +++D+VRGL  GADD+++KPF
Sbjct: 33  EYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPF 92

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
             EEL AR+ A+VRRSRG     +  G LS + +++   + G  + LT +E+  +  L  
Sbjct: 93  ALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLT 152

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R    + K      ++    E     I+V + +LRKKL+   G    I TV G GY+L
Sbjct: 153 RSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML 207


>gi|182435928|ref|YP_001823647.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776552|ref|ZP_08235817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464444|dbj|BAG18964.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656885|gb|EGE41731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 220

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGAYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN-KEELVARIRAIVRRS 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+    +      + RR 
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L V+  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 121 AGTAAPVLTVGALRVDTAARRVIRGEDEITLTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL     G + I TV G GY L
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKL-----GASAIRTVRGAGYRL 217


>gi|56477307|ref|YP_158896.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
 gi|56313350|emb|CAI07995.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
          Length = 227

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + + V     G  G+ L    ++D I+LD+ L  + G+
Sbjct: 1   MRILVIEDNRDILVNVLDYLQLKGYIVDCAQDGLSGLHLAVTEQYDLIVLDIMLPGVDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + LR  A   TP+ +L+   +++D++RGL +GADDY+ KPF   ELVARI AI+RRS
Sbjct: 61  QVCKRLREDAGRDTPIIMLTARDALDDRLRGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    L+  GDLS+++D       G  + L     +++E+L  R    + ++     L+
Sbjct: 121 QGSRTRLLQVGDLSLDVDTLQATRGGRALKLNPIGLKLLEILMRRSPAVVRRDTLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G + PE   +   I +LR+ L +    K  + T+   GY L E +
Sbjct: 181 -GENLPESDSLRSHIHQLRQVL-DKPFAKPLLHTIHSVGYRLSERS 224


>gi|33603205|ref|NP_890765.1| two component response regulator [Bordetella bronchiseptica RB50]
 gi|33568836|emb|CAE34594.1| two component response regulator [Bordetella bronchiseptica RB50]
          Length = 217

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 3/178 (1%)

Query: 44  EFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           E+DA+++DL L D  G  +LR +R     TPV +L+   +++D+VRGL  GADD+++KPF
Sbjct: 33  EYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTAQGALQDRVRGLNLGADDFLTKPF 92

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
             EEL AR+ A+VRRSRG     +  G LS + +++   + G  + LT +E+  +  L  
Sbjct: 93  ALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAALLT 152

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R    + K      ++    E     I+V + +LRKKL+   G    I TV G GY+L
Sbjct: 153 RSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLT---GSDVRIVTVRGLGYML 207


>gi|87119833|ref|ZP_01075730.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86165309|gb|EAQ66577.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 220

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L   I+  L  E + V     G+ G+      +FD ++LDL L  + G 
Sbjct: 1   MRVLLVEDDELLGKGIKKSLTREGYQVDWLMDGKQGLAALNTEQFDLLLLDLNLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R  +++TPV IL+   S++DK++GL  GADDY+ KPF   EL AR+RA+ RR  
Sbjct: 61  DILSAIRKQQLNTPVLILTANDSLDDKIQGLDLGADDYLPKPFEIAELKARMRALSRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH++  I  G L +N  +  V + G  + L  +E+ ++          L++    + +Y 
Sbjct: 121 GHSEPTIQFGRLHINPASMQVTLDGKDLTLGRREFTLLMEFVNHPGQILSRAKLEDVVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + E   I+V I  LRKK+        +I+TV G GY
Sbjct: 181 WDGDVESNSIEVHIHHLRKKVY-----PEFIKTVRGMGY 214


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +EL L+ +   V     G   +   +    D +ILDL L    G +V
Sbjct: 4   ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR+ + +TP+ +L+ +    D V GL  GADDY++KPF   EL+AR+RA++RR+ G 
Sbjct: 64  CRALRL-RHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASGP 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-DG 181
               +V GD+ ++ +A+TV +    + L  +E+ ++  L  +    ++++  L  ++ D 
Sbjct: 123 PVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCDH 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   + +DV + +LR+KL  +   +  IE++ G GY L
Sbjct: 183 EIDEASRTLDVHVNRLRQKLQKS---RVRIESIRGIGYRL 219


>gi|218886719|ref|YP_002436040.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757673|gb|ACL08572.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 278

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 124/264 (46%), Gaps = 30/264 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DDK L   +   L  E   V     G  G+      ++DA +LD+ L D  GF+
Sbjct: 3   RVLLIDDDKELCALLTEYLAPEGLAVEPCHTGGQGLARALSGDYDAALLDVALPDASGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R ++ + PV +L+G     D++ GL+ GADDY+ KPF   EL+AR+RA++RR+R 
Sbjct: 63  VLGTIR-SRSALPVLMLTGRGDDVDRIVGLEMGADDYVPKPFVPRELLARLRAVLRRTRV 121

Query: 122 HAQSL-----------------------------IVTGDLSVNLDAKTVEVQGHRIHLTG 152
           H                                 +  G ++V+  A+T    G  + LT 
Sbjct: 122 HGMGAAAGMAGAGTGAGSGGVGCIGGVGPYRKRNLSFGGITVDRSARTALRDGAPLPLTP 181

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
            EY ++ LL   +  T+ ++     +      P  + IDV +  LRKKL     G+  + 
Sbjct: 182 VEYAILVLLLEAEGATVARDDISRGVLGREILPFDRSIDVHVSNLRKKLGPCDDGQPRVG 241

Query: 213 TVWGRGYVLRENAKDETCEYLETA 236
           TV G GY  R +  + T   L+ A
Sbjct: 242 TVRGSGYYFRVSPTESTFGGLDAA 265


>gi|166710635|ref|ZP_02241842.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 122/219 (55%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+++ + V      E+G+ L      + ++LD+GL D  G EV
Sbjct: 1   MLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGHEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIRA++R++   
Sbjct: 61  LREIRQWS-NVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGAG 119

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  L+
Sbjct: 120 STVEESVFDDGRLHIHLGLREVTLNGEAVPLSRKEYALVALLLKHAGRVVTQPQLLRELW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
               E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 180 GPTHEEDTHYLRILVGKLRQKLQDDAAAPHYIVTEPGVG 218


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+K + +SI  +LK E + V     G + + L +    D I+LD+ +  + G   
Sbjct: 11  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR  K   PV ILS  +   DKV GL  GADDY+ KP+N  EL+AR++A +RR R  
Sbjct: 71  LMKLR-EKYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 129

Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              L       I+ G L ++   + V V+G  + LT  EY+++ELL        + E   
Sbjct: 130 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 189

Query: 176 NHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       V+  + V I  +R+K+   A    Y++ VWG GY
Sbjct: 190 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGY 234


>gi|288940893|ref|YP_003443133.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288896265|gb|ADC62101.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 236

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++ +   + + L+S+ + V   +    G+EL      D I+LDLGL D  G  
Sbjct: 9   RLLIIDDEEQIRRFLRISLRSQGYQVIEAETAGKGLELAATQTPDLIVLDLGLPDADGKS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV ILS  SS  +KV  L +GA+DY++KPF  +E +AR+RA++R  R 
Sbjct: 69  VLNELRHWS-TVPVMILSVRSSESEKVAVLDAGANDYVTKPFGIQEFLARVRALLRLPRA 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +   G L ++L  + V V G  +HLT KE+ + ++L       +T+   L  +
Sbjct: 128 TERPDAGIYDDGYLHIDLIKRIVSVMGEEVHLTRKEFAIFKMLVSNPGQVITQTQLLREI 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   +  FI ++R+KL        Y+ T  G GY
Sbjct: 188 WGPTHAGDTHYLRNFIGRIRQKLREDTDEPRYLRTEPGVGY 228


>gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   LK+  F       G+D  +     + D I+LD+ L    G  +
Sbjct: 2   IYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIMLPGSDGLAI 61

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  L     +   PV + +   +  DKV+GL  GADDY+ KPF   E+++RI+A++RRS 
Sbjct: 62  LEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLRRSE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +GH   ++  G+LS+++    V+     IHLT KE++++ LL    N   T++  L  ++
Sbjct: 122 KGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLKQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I  LR KL +A    +YI+T+ G GY L ++
Sbjct: 182 GDDFLGETRTVDVHIGTLRTKLGDAG---HYIQTIRGVGYRLEDD 223


>gi|317049050|ref|YP_004116698.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950667|gb|ADU70142.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 226

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  G+E      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSQYLIAEGFDAQLVLTGSAGVEGALSGNYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-QNSRLPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A     + ++  GDLS+N   +  E QG    LT  E+ +++LL    +  ++K+   
Sbjct: 120 DQAPLPDKKEVLRWGDLSLNPATRITEWQGKAFDLTASEFNLLDLLMRAPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KL+        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLAALTADSVNIETVRSIGYRIR 226


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L++E F+V     G   + +C     D ++LD+ L    G E
Sbjct: 5   RVLVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVMLPGFDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V R ++ ++   PV +L+  +   D + GL  GADDY+SKPF+   LVAR+ A++RR+ R
Sbjct: 65  VCRRVQASR-PVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADR 123

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H      +  +  GDL V+L  + V      IHLT  E+ ++   + R    + +E  L
Sbjct: 124 AHEAVPAERGGLAVGDLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIARESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 184 AEVWGWGDGAGSRTVDSHVKALRRKL-----GGDLIRTVHGVGYAL 224


>gi|163744528|ref|ZP_02151888.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
 gi|161381346|gb|EDQ05755.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD   A  I   LK+          G+ G       +FD I++D  L  + G 
Sbjct: 1   MRVLVVEDDGETAEYICTSLKALGHVTKHASDGKQGFLDALDNDFDVIVVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R A + TP+  LS +  + D+V GL++GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKSVRGANVDTPILFLSALGGLNDRVNGLEAGADDYLVKPFAFSELSARLTALARRPP 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +   DL ++L   TV   G  I +  +E++++  L       +T+ M L  ++
Sbjct: 121 MQAEETRLQVADLEIDLIRHTVCRSGQEIAVQPREFRLLSYLMKNAERVVTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +    +  I TV G GY L
Sbjct: 181 DFHFDPNTNVVETHISRLRNKI-DKPFDQPLIHTVRGAGYSL 221


>gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 249

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E +++     G   I   +    D ++LD+ L D+ G 
Sbjct: 24  IRVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVMLPDMSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           +VLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 84  DVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 143

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           V    G A+  IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L
Sbjct: 144 VTSEDGGAK--IVVGDLVLDEDSHEVTRGGDPIALTATEFELLRFMMRNAKRVLSKAQIL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         I+++++  LRKK+ +  G +  I T+ G GYVLR
Sbjct: 202 DRVWSYDFGGRSNIVELYVSYLRKKIDS--GREPMIHTLRGAGYVLR 246


>gi|91223230|ref|ZP_01258496.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
 gi|91192043|gb|EAS78306.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
          Length = 243

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKTQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++ +           G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGY 237


>gi|293397258|ref|ZP_06641530.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
 gi|291420176|gb|EFE93433.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
          Length = 229

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 116/219 (52%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLSF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  ++ EDKV  L +GADDY+SKPF   EL+AR+R  +RR    
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKVSALDAGADDYLSKPFGIGELLARVRVALRRHASS 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q   L+   +++V+L  + V   G  +HLT  E++++  L       LT+   LNH++ 
Sbjct: 127 QQENPLVTFSEITVDLINRRVLRSGEELHLTPIEFRLLTELLANAGKVLTQRQLLNHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL +      ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLESDPARPRHLLTETGVGY 225


>gi|288918060|ref|ZP_06412418.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350578|gb|EFC84797.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 242

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 132/223 (59%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED++ LA  +  +L    + V +   G+ G+ L   + ++ I++D GL  + G E
Sbjct: 24  RVLLVEDEQELATLVAGVLHGAGYAVDLAGDGQRGLHLGLTHHYEVIVVDRGLPVVDGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLRA R   + TPV +L+  S++ D+V GL +GA+DY+ KPF+  EL+AR+RA+ RR + 
Sbjct: 84  VLRAWRRCGVGTPVLVLTARSAVADRVEGLDAGAEDYLGKPFDLSELLARLRALRRRGQP 143

Query: 121 -GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A++L + G   ++L ++TVE   G  + L+G+E  ++ LL+ R      ++     +
Sbjct: 144 DAAAEALALPGGRRLDLASRTVEGTDGAVVALSGRECALLALLAGRPEQVFERQTLGERV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G  +P   I+DV++  LR+KL     G++ + TV G GY L
Sbjct: 204 F-GDADP--AIVDVYVHYLRRKL-----GRSVVRTVRGVGYRL 238


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|289677045|ref|ZP_06497935.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 157

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS G  QS I  G L 
Sbjct: 6   PILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLL 65

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++L+ K   +    + LT  EY+++E L L     + KE  +  LY   DE +  +I+V 
Sbjct: 66  LDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDERDPNVIEVL 125

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +LR+KL  +   K  IETV G GY+  E
Sbjct: 126 VGRLRRKLDGSVAFKP-IETVRGMGYLFNE 154


>gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 245

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAAR-PVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 251

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 27  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 87  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 147 TPEQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDF-SQPLLKTIRGAGYMIKDEG 251


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +    D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 7/218 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ +   I+  L ++ + V V   G +G++    + FD I+LD+ + ++ GFEV
Sbjct: 5   ILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + + P+ +L+ +   +D+++G   G DDYI+KPF+    + R+ A++RRS G 
Sbjct: 65  ANIIR-NQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYGE 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +   ++ V+ D   V V    I LT KE+++++LL   K   +T+E  +  ++  
Sbjct: 124 RTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E +IID  I  +RKKL+       YI+TV G GY
Sbjct: 184 EPYGETRIIDTHIKNIRKKLNTP-----YIKTVKGIGY 216


>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
          Length = 239

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++DDK L   +E  L  + F V      +    L +   F  ++LDL L    G 
Sbjct: 6   VKVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR  
Sbjct: 66  SICRRLRQKENQIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRQS 125

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++LI  G  ++NL  + +    + + LT  E+ +++ L       L+++ 
Sbjct: 126 KEVPGAPSAEENLIKFGKFTLNLATREMSEGDNTVSLTSGEFAVLKALVSHPREPLSRDK 185

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 186 LMN-LARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVF 233


>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 231

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 227


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V  +  GE+ +   K  +FD I++D+ +  I GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    +TP+  L+   + +DK++G  SG DDYI+KPF+  EL  R+ AI+RRS  
Sbjct: 64  AIKVIR-KFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+      I LT KE+ ++ LL+  K            
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KL++      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G++ +++     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QTSEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGY 231


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GFE 61
           IL+++D+  L   +      E   V     G   IE      FD ++LD+ L   P G+E
Sbjct: 25  ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGYE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR  +   P+ +L+ + S  D V GL++GADDY++KPF   EL +RIRA++RR+  
Sbjct: 85  VCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAGP 144

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G +  L+  G ++++   + V + G  +H+T  E++++E L         ++  L  
Sbjct: 145 RPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLRA 204

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + IDV +  LR+KL        +I TV G GY L+
Sbjct: 205 IWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRLQ 249


>gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSK-PMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +   +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSKYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 239

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 127/242 (52%), Gaps = 24/242 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ L  ++   L      V     GE    L +   FD +ILDLGL  + G EV
Sbjct: 4   LLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVSGMEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR    + PV +L+    +ED+V+GL +GADDY++KPF+  EL AR+ A++RR+R  
Sbjct: 64  LRWLRKRLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLRRARLP 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G +  L+  G   + +DA+  +       + LT +E+ ++ LL       +++E   +
Sbjct: 124 AFGGSLELVTDGARRLRVDARLPQAWLGDEALELTQREWALLSLLVTNAGQVISRE---D 180

Query: 177 HLYDGRDEP------------EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L   + EP                ++V+I +LR+KL+++  G N I  V G GY+L  +
Sbjct: 181 VLCAWQSEPGDGTSTGASAGVGSNALEVYIHRLRRKLADS--GLN-IRNVRGLGYMLESS 237

Query: 225 AK 226
           A 
Sbjct: 238 AP 239


>gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR
 gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122]
          Length = 224

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 5   LVVDDDSRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVIDIMMDGMDGFQLC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 65  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 124 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWGYDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 184 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|304322337|ref|YP_003855980.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303301239|gb|ADM10838.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 225

 Score =  114 bits (286), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+  A  I   LK E F V     G DG+        D +++D  L  + G  
Sbjct: 3   RILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQATESPPDLVVVDRMLPGLDGVS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V++ALR A +  PV  L+ M ++ED+V GL++G DDY+ KPF+  EL AR+  ++RR   
Sbjct: 63  VIKALRAAGVKIPVLFLTAMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRRPPL 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L   G ++V+   + V      + L  +EYQ++E L L K+  +T+ M L  ++
Sbjct: 123 KDEITRLEARG-VTVDRLTRRVTAGSQTVDLQPREYQLLEYLLLHKDQIVTRTMLLEEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   I++  + +LR KLS  AG    I TV G GYV+
Sbjct: 182 SFHFDPGTNIVETHLSRLRAKLSE-AGTSALIRTVRGAGYVI 222


>gi|315223364|ref|ZP_07865223.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
 gi|314946695|gb|EFS98684.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
          Length = 223

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K L  ++   L+ E+F V        G+     Y++D I+LD+ L +  G 
Sbjct: 1   MKILIIEDEKELRLTLRQFLEQEHFLVETAKDYPSGLAKLADYDYDCILLDIMLPNGSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  K +  V I+S   S+EDKV GL+ GADDY++KPF+  EL+AR+++I+RR  
Sbjct: 61  QLLDELRAMKKNHSVLIISAKDSVEDKVLGLEKGADDYLAKPFHLAELLARVKSIIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-----KNTTLTKEMFL 175
              + +I   ++ +  + +TV+V    + L  KEY ++    +R     + TTL + ++ 
Sbjct: 121 QQGEEVITLKNVQLFPETRTVKVGNTTLTLNRKEYDLLYYFIIRPERLVEKTTLAEAVWG 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ D  D   +  I   I  LRKKL  A    + ++ V+G GY L
Sbjct: 181 DYI-DQVD--SLDFIYSQIKNLRKKLKTAEAEID-LQAVYGIGYKL 222


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S+      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ +++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE 238


>gi|32477260|ref|NP_870254.1| two-component response regulator [Rhodopirellula baltica SH 1]
 gi|32447811|emb|CAD77329.1| probable two-component response regulator [Rhodopirellula baltica
           SH 1]
 gi|327541221|gb|EGF27765.1| two-component response regulator [Rhodopirellula baltica WH47]
          Length = 237

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA  +   L    F+V + + G+   +      FDAI+LD+GL  + G +
Sbjct: 15  RLLLVEDDTHLAAMVSDFLHENGFHVEIENDGKLAAQRIVHDRFDAIVLDIGLPSMNGID 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R  + S P+ +L+      D+V  L+ GADD++SKP     L+AR++  +R+S  
Sbjct: 75  VCRSVR-NQFSGPIIVLTARGEEIDEVVALEVGADDFMSKPVRPRALLARLKNHLRKSDA 133

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT-KEMFLNHL 178
               +  I+ GDL V    + V + G  + +T  E+ +IE L+LR  + +  K+++++ L
Sbjct: 134 QLTDEDRIIVGDLVVTPARRQVTIAGDPVDMTTAEFDLIEYLALRAGSVVARKDIYVDLL 193

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              YDG D    + ID+ + ++R+KL +       I++V G GY++
Sbjct: 194 GLPYDGLD----RSIDLRVSRVRRKLGDDPNQPTRIKSVRGVGYLM 235


>gi|238783966|ref|ZP_04627982.1| Transcriptional regulator in 2-component system [Yersinia
           bercovieri ATCC 43970]
 gi|238798834|ref|ZP_04642303.1| Transcriptional regulator in 2-component system [Yersinia
           mollaretii ATCC 43969]
 gi|238715074|gb|EEQ07070.1| Transcriptional regulator in 2-component system [Yersinia
           bercovieri ATCC 43970]
 gi|238717342|gb|EEQ09189.1| Transcriptional regulator in 2-component system [Yersinia
           mollaretii ATCC 43969]
          Length = 232

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L        ++  + +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDIM-MPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V           L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|312961275|ref|ZP_07775780.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
 gi|311284933|gb|EFQ63509.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
          Length = 235

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++LL+EDD+ LA  I   L    F V V   G++   L  F +F    ++LDL L    G
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVRVVHRGDEA--LAAFLDFKPKIVVLDLMLPGQSG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR 
Sbjct: 66  LHVCREIRSVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQ 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +  G L+++   + V +    I LT  E++++ LL+    T L+++  LN 
Sbjct: 125 APEPTVRGALAFGRLAIDRSCRVVSLGEDTIDLTTMEFELLWLLASNAGTLLSRDDILNR 184

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +DG +    + +DV+I KLR KL++       I+TVWG+GY+    A
Sbjct: 185 MRGIAFDGLN----RSVDVYISKLRGKLNDNPREPVCIKTVWGKGYLFNPFA 232


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +   + L L+ + F+V      E   E  +      I+LD  L    G  
Sbjct: 12  RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R+LR A+   S P+ +L+      D+V GL+SGADDY+SKPF+  EL AR++A++RRS
Sbjct: 72  WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G    + +  G+L V++ A  V +    + +   E++M+ L +   +   ++E  L+H+
Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  +   E + +DV I +LR+ L+   G  N IETV G GY
Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAK-VGYANIIETVRGEGY 231


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 12/221 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++ED+  + + ++L L  E ++V   + GE  I+L  FYE  FD +ILD+ L    G
Sbjct: 3   KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKL--FYEKPFDLVILDIMLPKKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + VLR ++    S PV ILS     ED++ G + G D+YI+KPFN + L+ARI+ +++ +
Sbjct: 61  WSVLREIKKYS-SVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +I  G +++N  + TV V+G  + L  KEY+++  L       L+++  L  ++
Sbjct: 120 SNNTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVW 179

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G D P   + ID  I  LRKKL     G   I+TV G GY
Sbjct: 180 -GYDFPGSDRTIDTHIKNLRKKL-----GDECIKTVRGIGY 214


>gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7]
 gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7]
          Length = 236

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+    I+D+ +  + G E+
Sbjct: 6   ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVMDGIEM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R      P+  LS  S   DK+ GL  G DDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMKIR-ENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKY 124

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A +  V G L ++LD K V V G  + +T  E +++ELL  +     + 
Sbjct: 125 LNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFSS 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E    +++        + + V +  LR+K+        Y++ VWG GY
Sbjct: 185 EQIYENVWH-EAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGY 231


>gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 237

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R ++++D++ALA  +   L+ + F  +V   G   +++ +  + D ++LDLGL  + G E
Sbjct: 8   RAVVVDDEQALARLVAGYLERDGFETHVCHDGVGALQVLREVDPDVVVLDLGLPGLDGVE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR       V +L+  +   D + GL  GADDY++KPF+  EL+AR+  ++RR R 
Sbjct: 68  VCRQLRTFS-DCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPRR 126

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +  G L+V+ DA+ V V G  + LT  E+ ++  L+ R    L++   
Sbjct: 127 TPGPAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRAL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  ++      +  ++DV +  +R+KL ++A  + ++ TV G GY
Sbjct: 187 IEAVWGAGWVGDEHLVDVHVLHVRQKLGDSAEQQRFVRTVRGVGY 231


>gi|241666518|ref|YP_002984602.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240861975|gb|ACS59640.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 224

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+  +A ++   L   +  + +V+ L  D   +     +DA++LD  L D  G
Sbjct: 1   MRILLIEDEPQMAVALRGALTRHDMVMDHVSTLC-DAEMVIGDGAYDAVLLDRQLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E++  +R   ++ P+ +++    + D++ GL++GADDY++KPF  +EL+AR+RA++RRS
Sbjct: 60  LELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVMRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI  G LS +     + V G R+ +  +E  ++E L  R    + +   +  ++
Sbjct: 120 ETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMVPRPALMEAVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              DE +   +D  I +LR+KL+ +  G   I  + G GY+LRE +
Sbjct: 180 GFDDEIQSNALDSHISRLRRKLAASQAGV-VINVIRGVGYLLREAS 224


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    +NV     GE+ + L K    + I+LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR  R
Sbjct: 71  VCQEIR-KESDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129

Query: 121 GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H    I T      G L+++++ + V    +RI LTG E+ ++ELL  +     ++   
Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189

Query: 175 LNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E  V  +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 239


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT-----T 168
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+           
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++++ +  Y+G +      + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGN-----TVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|27379913|ref|NP_771442.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27353066|dbj|BAC50067.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A ++   LK  +  V       D  E        A++LD  L D  G 
Sbjct: 1   MRILLVEDEAEMAGALASALKRYDMVVDHAPTLADAEEAISADVHVAVLLDRQLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      P+ +L+    + D++ GL SGADDY++KPF  EEL+AR+RA++RR  
Sbjct: 61  ALIPKLRARADGVPIIVLTARGELADRIAGLDSGADDYLAKPFAVEELLARLRAVMRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G L+ ++  +   + G    L  +E  ++E L  R   T+ +      +Y+
Sbjct: 121 GLTPDVIRAGRLAFDVGHREASIDGQPFELPRRELLVLEALIRRIGRTVIRSALEEAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +   +D  I +LR+KL+ A  G   I  + G GY+L++
Sbjct: 181 FDDEIQSNALDTHISRLRRKLAEADAGIE-IHGIRGVGYLLKK 222


>gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 239

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++LI  G  ++NL  + +      I LT  E+ +++ L       L+++  
Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVF 233


>gi|304398321|ref|ZP_07380195.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354187|gb|EFM18560.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 226

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  GI+     EF A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLSQYLIAEGFDAQLVLTGSAGIQGALSGEFTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-QNSRIPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A+  +  G+L++N   +  E QG    LT  E+ +++LL    +  ++K+   
Sbjct: 120 EQVPQPDAREPLRWGELTLNPATRMSEWQGRAFDLTASEFNLLDLLLRAPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KLS        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLSALTADSINIETVRSIGYRIR 226


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A      L+  ++   +   G++G+E  K   +  ++LDL L D+ G+E
Sbjct: 3   RILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDGYE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------ 114
           + R +R +++I  P+ +++  +   D +RGL  GADDYI+KPFN  +L+AR++A      
Sbjct: 63  ICRQIREISEI--PIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFD 120

Query: 115 -IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +V R +   + + + G L +    + V V      LT KE+ ++  ++   N   +KE 
Sbjct: 121 RLVSRGQNKEEDMRIRG-LHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEH 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      +V  + V I +LR+K+       +YIETVWG GY
Sbjct: 180 LLEQVWGFDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGY 225


>gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 246

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ +LA  + +  +   +   +   G + +   +    D ++LD  L    G 
Sbjct: 22  IKVLVVDDEPSLAELVAMGTRMLGWEATMAHDGPEAVATARSLAPDVLVLDWMLPGFDGP 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV  L+   ++ED++ GL +GADDY++KPF+ EE++ R+  +V RS 
Sbjct: 82  EVLRKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDYVAKPFSLEEVLIRLHRLVERSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +V GDL +N D+  V   G  I LT  E+ ++  L       ++K   L+++
Sbjct: 142 AATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFDLLSYLMNNARRVVSKSQILDNV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    + +  I++++I  LRKK+   A  +  I TV G GYVL+  A
Sbjct: 202 WHYDFDGQANIVELYISYLRKKIDVDA--EPMIHTVRGVGYVLKPAA 246


>gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 236

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +   P+ +L+  S   D V+GL +GADDY+ KPF   EL+ARIRA +R     
Sbjct: 70  CQDIR-RESGVPIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|271499431|ref|YP_003332456.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342986|gb|ACZ75751.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD   A  +E  LK +NF V +   G  G+E+    + D I+LD+ L  + G E
Sbjct: 5   RILIIEDDTDAASVLEAYLKRDNFQVLLAGDGVGGLEMALRVKPDLILLDVMLPGLNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR  K   PV +++ M    DK+  L+ GADDY++KP++  E+VAR++A++RR+ G
Sbjct: 65  VLAALR-RKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTSG 123

Query: 122 --HAQSLIVTGDLSVNLD---AKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  G L V+ D   A   + QGH   + LT  E+ ++  L   +    +++  
Sbjct: 124 VMTPGRTLSFGPLVVDQDAMLAAVTDTQGHSQPLELTPTEFSLLTTLLRAQTRAFSRQEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L       D  E +++D  I  LRKKL  A G    + TV   GY  R+
Sbjct: 184 LEACLPESDALE-RVVDTHIYNLRKKL-EAVGISGVLLTVRAVGYRFRQ 230


>gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD+ L   +   L  E+F V  T+  E+G         D ++LD+ +  + G E
Sbjct: 3   RVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRHDIVVLDIMMPRMSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R 
Sbjct: 63  VLRRIR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
                  + +I  GDL++    +    QG  + LTG E+ ++E L+      ++K+ + +
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 182 NAL--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYLL 226


>gi|163867922|ref|YP_001609126.1| two-component response regulator [Bartonella tribocorum CIP 105476]
 gi|161017573|emb|CAK01131.1| two-component response regulator [Bartonella tribocorum CIP 105476]
          Length = 228

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E        ++ V   G+ G  L     +D +++D  L    G 
Sbjct: 1   MKILVIEDDRETGRYLEKAFLEVGHSIDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++GADDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIITELRAKGNETPVLILSALGQVNDRVTGLRAGADDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++    +L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVSNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+      K++    + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIE-----KDFDVPLLHTVRGAGYMLK 222


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    + V+    G++G+++    E   D IILDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K S     P+ +L+      D+V GL+ GADDYISKPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAV 123

Query: 116 VRR----SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR    ++  +QS  +T G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E     + +      + + IDV I +LR  + +       I TV G GY
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233


>gi|329941681|ref|ZP_08290946.1| putative two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299398|gb|EGG43298.1| putative two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 223

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 128/222 (57%), Gaps = 11/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ LA  +   L+ E + V V   G+ G+ L    E+D +++D  L  + G +
Sbjct: 8   RLLLVEDDRELADMLSGTLRDEGYAVDVATDGQRGLHLGLSREYDVLVVDRRLPALDGLD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   + TPV +L+GM ++ D++ GL +GADDY+ KPF+ +EL AR+RA+ RR+  
Sbjct: 68  LLGRLRSRAVRTPVLMLTGMGAVNDRIDGLDAGADDYLVKPFDLDELSARLRALCRRAHD 127

Query: 122 HAQSL-IVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  L I +G L V    + VE+  G ++ L  +E+ ++ +L+   +  L++      ++
Sbjct: 128 TADVLSIGSGRLFVG--RREVELADGEQVPLAAREFALLWVLASHPDAVLSRAQLRRLVF 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ P   I+D ++  LR+KL     G+  + TV G GY L
Sbjct: 186 --QEAPASSIVDTYVYYLRRKL-----GRKVVRTVRGAGYRL 220


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++DDK +   + L L+ + ++V +   G+D +   K    D ++LD+ L    G+
Sbjct: 7   LKVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGW 66

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V R +R  KIS  P+ +++      DKV GL+ GADDYI KPF+ +E++ARI A+ RR 
Sbjct: 67  QVCREIR--KISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRV 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  +    LSVN+D+  ++V G  I    KE +++  L+   N   T++  L
Sbjct: 125 GTGISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + IDV I +LR+KL   +  K  ++TVWG GY
Sbjct: 185 DEVWGFEYYGDSRTIDVHIKRLREKLEGIS-DKWSLKTVWGVGY 227


>gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
 gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
          Length = 224

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S        + G   +E       D ++LD+ L    G E+
Sbjct: 2   IFCVEDDSNIRELVVYTLESTGLKARGFEEGSSFLEALALETPDLVLLDIMLPGEDGMEL 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +  +   PV +++   +  DKV GL +GADDY++KPF   ELV+RI+A++RRS 
Sbjct: 62  LKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLRRSA 121

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  IV G++ +NL    V   G  I LT KEY++++ L    N  LT++  L  
Sbjct: 122 REGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E + +DV +  LR+KL +A      IETV G GY +RE
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGSAG---ERIETVRGVGYRMRE 224


>gi|118586833|ref|ZP_01544268.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889967|ref|ZP_06553053.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
 gi|118432753|gb|EAV39484.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480409|gb|EFD89047.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
          Length = 228

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPGF 60
           IL+IED+ A+   ++  LK E++ V     GE G+ + +      + ++LD  L    G 
Sbjct: 6   ILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +++  S I DKV  L SGADDYI+KPF  EEL+AR+R  +R   
Sbjct: 66  EVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQN 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L    +L ++LDA  V   G  I LT +E+Q++  L      TLT++  L++++ 
Sbjct: 126 KPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENAGKTLTRDDLLDNVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +    DV+I  LR+K+ +    K  I TV   GYVLR
Sbjct: 186 VDFNGQYNTADVYIRYLRQKIDDHFYPK-LIHTVRSVGYVLR 226


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  + H +   +++  F+V     G   +E+ + +  D ++LDL +  I GFE
Sbjct: 5   RILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGIDGFE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+    +   PV +L+      D++ GL+ GADDY+ KPF+  EL+ RIRAI+RRS
Sbjct: 65  VCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRRS 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A  + +  +  LSV+ +   + V G    LT  E++++          LT++  L+ 
Sbjct: 125 ATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  + E   + +D  + +LR+KL   A   + +ETV G GY  R
Sbjct: 185 VWAYQFEGYARTVDTHVRRLRRKLGPHA---DRVETVRGVGYRFR 226


>gi|311898800|dbj|BAJ31208.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 217

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   GE  ++     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLAEAVATGLRREAMAVDVVYDGEAALQRIAVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    ++T V +L+    I D+V GL+ GADDY+ KPF   ELVAR+RA+ RR+ 
Sbjct: 61  DVCRRVVEQGLATRVIMLTASGDISDRVEGLEIGADDYLPKPFAFSELVARVRALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    +S++   + V   G  + L  KE+ ++E+L       ++ E  L   +D
Sbjct: 121 VPLPPVLERAGISLDPGRREVIRDGRPVQLAPKEFAVLEVLMRAGGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 EHTDPFTNVVRVTVMTLRRKL----GDPPVIVTVPGSGY 215


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++++  +  +L  E ++V V   G   +     +  D ++LDL L    G E
Sbjct: 3   RILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGASGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR AK   P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR+  
Sbjct: 63  VCRQLR-AKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     ++  G + ++++     V+G  + L  KE++++E+L       +T+   ++ +
Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+         + TV G GY
Sbjct: 182 WGQDYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGY 222


>gi|225574206|ref|ZP_03782816.1| hypothetical protein RUMHYD_02270 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038574|gb|EEG48820.1| hypothetical protein RUMHYD_02270 [Blautia hydrogenotrophica DSM
           10507]
          Length = 241

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 118/238 (49%), Gaps = 18/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVT------------DLGEDGIELCKFYEFDAII 49
           R+ L+EDD+ L   +   LK   F + V                  G  L K YE   ++
Sbjct: 3   RLFLLEDDEDLIEGLTYTLKKNQFELDVARTVHSARRLLADQKNTAGCSLPKPYEL--LL 60

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LD+ L D  GFE+   LR     TP+  L+        +RGL SG DDYI+KPF   EL 
Sbjct: 61  LDVSLPDGTGFEICEELRKTGNLTPIIFLTAADEETSIIRGLDSGGDDYITKPFRIGELC 120

Query: 110 ARIRAIVRRSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
           +RIRA++RRS   + S   L+++G L+++L A    + G  + LTG EY+++ LL     
Sbjct: 121 SRIRALLRRSSHFSHSNPDLLLSGPLTIDLLASKTTLNGVPLELTGAEYRLLCLLVKNSG 180

Query: 167 TTLTKEMFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L +   L+ L+DG     +   + V+I +LR+KL        ++ TV G GY  +E
Sbjct: 181 RILARSTILDVLWDGNGSFIDDNTLSVYIRRLREKLEQDPSHPEHLITVRGFGYQWKE 238


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++A  IEL L++EN++++    G+D +E  +   +D  ILD+ + D+ GF +
Sbjct: 5   ILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLDGFSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      PV +L+  S+  DK+ GL  GADDY++KPFN  EL AR++  +RR   +
Sbjct: 65  LKKIR-KHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYLRY 123

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+            L +N       +    ++LT  E+ ++  L  ++   +T E    
Sbjct: 124 NQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEELFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +       +   + +LR+K+   A    +I+TVWG GY +
Sbjct: 184 AVWQEKYLDNNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTI 228


>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 240

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 14/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD+ LA      L+S    V V   GE+ I   +  + D ++LDL L    G  V
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLMLPGADGLTV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A    P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR    
Sbjct: 71  CREVRSA-YKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R ++ + +  G L ++  A+ V + G  + LT  EY ++ LL+    T L++E     
Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L    YDG+D    + IDV I ++R K+ +       I+TV  +GY+ 
Sbjct: 190 LRGIQYDGQD----RSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGY 231


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ ++A      L+   F V ++  G++G+E     ++D ++LDL L  + G+E
Sbjct: 3   KVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ ++S   +  DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRRIRATK-EIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDR 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A      + +I   +L ++  ++ V   G    LT KE+ ++  L+   N    KE   
Sbjct: 122 LAGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I  +R+K+   +    +IET+WG GY  R
Sbjct: 182 KEVWGLESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRFR 228


>gi|302558018|ref|ZP_07310360.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302475636|gb|EFL38729.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           +R+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 2   VRLLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPEGEGFGVVLLDLGLPDQD 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  +  TPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 62  GYEVCGKIR-KRTGTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 120

Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S      G  ++ +  G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 121 SVPEEATGSTETELRLGPVRIELPTRQVTVNGAPVQLTRKEFDLLALLAQRPGVVFRREQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 181 IISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LIETVRGVGYRL 224


>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 230

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   ++  L +  + V V   G++ ++       D I+LDLGL D+ G +
Sbjct: 5   RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TP+ +LS      +K+     GADDY++KPF   EL AR+R  +R +  
Sbjct: 65  VIRELR-GWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAAQ 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  Q+ + +G L V++ A TV + G  + LT KE+ ++ +L       LT    L  ++
Sbjct: 124 QASEQTHLKSGALEVDVLAHTVTLNGAAVKLTPKEFDLLAILVRNAGRLLTHRQLLAAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +++ + VF+ +LR+KL  +     +I T  G GY L+
Sbjct: 184 GAAHTEDLQYLRVFVGQLRQKLKASPDAPEFIVTEPGIGYRLQ 226


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+++A      L+   F   +   G  G++L    EFD I+LD+ L    GF+
Sbjct: 3   KILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  K   P+ +++       K++GL  GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  VCQEIRAVK-EIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +  + +S I+ G + + L A+ V +  + +    KE++++  L+   N   +K+
Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      +   I V I ++R+K+   +    YIETVWG GY
Sbjct: 182 TLLDRIWGEESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGY 228


>gi|167760456|ref|ZP_02432583.1| hypothetical protein CLOSCI_02830 [Clostridium scindens ATCC 35704]
 gi|167661955|gb|EDS06085.1| hypothetical protein CLOSCI_02830 [Clostridium scindens ATCC 35704]
          Length = 227

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ + + +  ++KS  F V     G   +E      +  I+LD+ L D+ GF+
Sbjct: 4   KVLVVDDDETVLNMLYKIMKSNGFLVETESSGIVALEKIHAETYSLILLDINLQDMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+++R A I+TPV I+SG     D + GL  GADDYI+KPFN   L A+ +A++RRS+G
Sbjct: 64  LLQSVRQAGITTPVIIISGRKEDYDTLYGLDLGADDYITKPFNPIILAAKAKALLRRSQG 123

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +L+  G    N         G  I L+ KE  +I L     N   +K+     +
Sbjct: 124 SLGTNPTLLSAGPFEYNTVTMRFYKNGEEIILSSKENAIIRLFMDNVNRVFSKDALYEMV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D  D  +   I V++ +LRKKL        YI TV G GY
Sbjct: 184 WDN-DIVDDSTIVVYMNRLRKKLEEDFSNPKYILTVRGLGY 223


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++L   +   L++E F V V   G++          D ++LD  +  + G E+
Sbjct: 11  ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIEL 70

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 71  CRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRAK 130

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H   ++V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ ++
Sbjct: 131 PTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 191 GHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 233


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  +I++  ++E + V+  + G++ + +    E   I++D+ +  + G + 
Sbjct: 11  ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDGIQT 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R LR   I  PV +L+  S   DKV GL  GADDY++KPFN  EL+AR ++ +RR    
Sbjct: 71  VRKLREDSI-IPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVRF 129

Query: 119 --SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               G     ++T D L ++ +AK V+V G ++ LT KE++++++L L K    + E   
Sbjct: 130 GGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETIY 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I  LR+K+        +I+ VWG+GY
Sbjct: 190 RKVWGEEPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGY 233


>gi|327190898|gb|EGE57954.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli
           CNPAF512]
          Length = 230

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V          +       D ++LDLGL D PG 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLTAQGYEVREAPNAASARQSVADDMPDLVVLDLGLPDTPGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V+I ++R+K+        +I T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYIRQIRQKIEKIPDQPYFITTETGVGYRLRE 228


>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++A+ + ++L+   E F +V+    G D + L +  +FD IILD+ L D+ G 
Sbjct: 5   RILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILDIMLPDLSGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ RA+R      P+  +S  SS  DK+ G   G DDYI+KPFN  E+VAR++A ++R  
Sbjct: 65  EMCRAIRKG-CDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++     ++  G   +NL A  + V+G  +  + + Y+++       N   TKE   
Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V I K+R+K+        Y++T+ G GY L
Sbjct: 184 YQVWGEDQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKL 229


>gi|169633265|ref|YP_001707001.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           baumannii SDF]
 gi|169152057|emb|CAP00941.1| regulator of kdp operon (transcriptional effector) [Acinetobacter
           baumannii]
          Length = 238

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDVMQRLVWIEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 13/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +       L+   F+V     G   + L +      I+LDL L  + G +V
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMDGLDV 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RALR   ++   P+ +L+      D++ GL+ GADDYI+KPF+  ELVAR+RA++RR  
Sbjct: 65  TRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRIE 124

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH Q   +I  G L+++L+ + V      I LT  E++++ +L+       T+   L+ +
Sbjct: 125 GHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQLLDRI 184

Query: 179 YD----GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLRE 223
           Y+    G D    + ID  I  LR+K+  +  G    I TV+G GY   E
Sbjct: 185 YNTNYIGFD----RTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKFAE 230


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+S+ ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + ++T GDL ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYAL 225


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   + L L+ E ++V  T  G D I+  + ++ D ++LD+ L  + G++
Sbjct: 5   KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   PV +++      DKV GL+ GADDYI KPF+ +E+VARI+A++RR  G
Sbjct: 65  VCREIR-KKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSG 123

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +      +L VNL    + V G  +    KE +++  L+   N   T++  L+ +
Sbjct: 124 AENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV I +LR+KL   +   + ++TVWG GY
Sbjct: 184 WGFEYYGDSRTVDVHIKRLREKLEGKSDQWS-LKTVWGVGY 223


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   +   G + +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  + + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G
Sbjct: 63  VCKQLR-QRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG-G 120

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++ L+      G + ++++   V V G  + L  KE+ ++E L       LT+   ++ 
Sbjct: 121 ESEELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGY 222


>gi|223982492|ref|ZP_03632731.1| hypothetical protein HOLDEFILI_00005 [Holdemania filiformis DSM
           12042]
 gi|223965517|gb|EEF69790.1| hypothetical protein HOLDEFILI_00005 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  + + I  +L +E F        +  + L     +D ++LDLGL D  G +
Sbjct: 7   RILIVEDDPQIRNFISYVLSAEGFASDNAATAQSAMTLLAANVYDLMLLDLGLPDYDGMD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V+R +R      P+ ++S     ++K + L +GADDY++KPF+  EL+ARIR  +R    
Sbjct: 67  VIRKVREWS-EIPILVVSARDQDQEKAQALDAGADDYLTKPFSTTELMARIRVAIRHAFR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++    Q ++   +LS++L+ + V ++G  +HLT  EY ++ L        LT    ++ 
Sbjct: 126 QNTAAVQKVLTVRELSLDLEKRQVTLRGQPLHLTPMEYNLLSLFLRNSGKVLTTRYLISA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +   +  LR+K+        YI T  G GY L E 
Sbjct: 186 IWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLVEQ 232


>gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 18/233 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           IL+++DD+ +    EL+      N   T L  +G ++    E    D I+LDL L    G
Sbjct: 7   ILIVDDDREIR---ELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDG 63

Query: 60  FEVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
             + R LR  K  T PV +L+  +   D++ GL+ GADDY+SKPF   EL ARIR+++RR
Sbjct: 64  LTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRR 123

Query: 119 SR--------GHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +R              +V GD  ++  A+  ++ QG  + L+G EY+++ +        L
Sbjct: 124 ARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVL 183

Query: 170 TKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T++  LN L  GRD +P  + ID+ I +LR++L + A    YI+T+   GYV 
Sbjct: 184 TRDQLLN-LTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235


>gi|304395690|ref|ZP_07377573.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356984|gb|EFM21348.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 224

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   + L L++E+  V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 4   VLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGLIEAATRKPDLVILDLGLPDGDGTDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  G 
Sbjct: 64  IRDLRQWS-AIPVIVLSARSDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRRHSGQ 122

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                V   D+SV+  A+ V+  G+ IHLT  E++++ +L       LT+   L+ ++  
Sbjct: 123 QPDARVHFADVSVDFAARRVQRGGNEIHLTPIEFRLLSILLNNAGKVLTQRQLLSQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL        ++ T  G GY
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPAHLLTETGIGY 220


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V + LR     A+I  PV +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++R
Sbjct: 63  VCQRLRRDERTAEI--PVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+    Q+     ++  G L++  +       G  + LT  E++++  L  R   T++  
Sbjct: 121 RTDRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 181 EILREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|309775903|ref|ZP_07670896.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916325|gb|EFP62072.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 231

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL I+DD  L  S     K  N+ +      ++G++  +   +D IILDL L D+ G+EV
Sbjct: 4   ILFIDDDDMLLESAWRFFKGINYQMDKAANAKEGLKRMQSRSYDCIILDLKLPDLDGYEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R+   STP+ ILS  + ++ +++GL+ GADDY+ KPF+ +EL+ RI+  ++ SR  
Sbjct: 64  LRQMRL-HTSTPIIILSNYTEVDRRIQGLRMGADDYVCKPFSFDELLLRIQLRIQDSRKR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  G+L ++   + V  QG+ I     E++++ LL+ +     T E   + ++   
Sbjct: 123 TAVVLNYGELIIDTGTQKVTYQGNTIFFNRTEFEILSLLASQPGRIYTYEQIYDAVWKEP 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                  +   + ++R KL    G + YI TV G+GY+    A+ + C
Sbjct: 183 LNESRHTLQARVAEVRIKLLTLTGLQ-YIITVRGKGYLF--TAEPQKC 227


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   +   +   +DA+ILDL L  + G E
Sbjct: 6   KILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQEA 125

Query: 122 HAQSL-IVTGDLSVN-LD----AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++ +  G +S++ LD    A+ V + G  I LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + ++  + E     ++  I +LR K+         I TVWG+GY    N  +
Sbjct: 186 DRVWGYQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATNKPE 237


>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 226

 Score =  114 bits (286), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+ A++ ++   L++E F      LG + + L      D ++LD+GL DI GF
Sbjct: 1   MRILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR      PV  L+  S   D++ GL+ GADDY++KPF+  E+V+R+RAI+RRSR
Sbjct: 61  DVCRLLR-RNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRSR 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +      +   +V+ +   V   G  ++LT  EY ++ LL  R    L++   + +
Sbjct: 120 PELRNGAGATASARFTVDGEGLRVAYHGVWLNLTRYEYLLLTLLLARPGRILSRGQIMEN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E   + +D  +  LR KL      +  I T  G GY
Sbjct: 180 VWQDSGESLERTVDTHVKTLRGKLRAVRADEEPILTHRGLGY 221


>gi|332993151|gb|AEF03206.1| response regulator receiver domain-containing protein [Alteromonas
           sp. SN2]
          Length = 229

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+ED++A+A+ I   L+   ++V     G+ G+ L   + FD +ILDL L DI G 
Sbjct: 5   LRVLLVEDNQAIANQIIGFLQGHGWDVDYAATGKLGVTLALEHTFDVVILDLNLPDIDGL 64

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            V   ++  A  + P+ +L+   + EDKV+G   GADDY++KPF+  EL  R  A+ RRS
Sbjct: 65  RVCEKIKYHASANIPILMLTARDAFEDKVKGFGKGADDYLTKPFDLRELALRCEAMSRRS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             H  +L+  G LS  LD ++ EV      I +T   ++++  L       +++   + H
Sbjct: 125 ELHQNTLVSHGALS--LDTRSFEVLWNNENIKVTKVGFKLLHKLLNEIPYPVSRSELIEH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++ G + PE   +   I  LRK  +    GK  + T+   GY L+
Sbjct: 183 VW-GDEPPESNALKSHIYALRKA-TEQVTGKPILHTISNIGYQLK 225


>gi|182440354|ref|YP_001828073.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326781022|ref|ZP_08240287.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178468870|dbj|BAG23390.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326661355|gb|EGE46201.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 215

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 123/219 (56%), Gaps = 5/219 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++ ED++ +A  +E  L+   +   V   G    E  +  +FD +ILDLGL    G  VL
Sbjct: 1   MIAEDEERIAAFVEKGLRRSGYVTRVVADGLSAYEHARGRDFDLLILDLGLPGDDGLTVL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR A+IS PV IL+   S+ D V GL+SGADDY+ KPF  +EL+AR+R  +RR     
Sbjct: 61  RKLRKARISLPVVILTARDSVSDIVAGLESGADDYMVKPFAFDELLARVRLRLRREEPAE 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             L+  GDL ++L  +  +V      L+ +E+ + E+L    +  L++E  L+ ++    
Sbjct: 121 NFLLRVGDLILDLRTRRAQVGDRVSDLSAREFALAEILMRNPDRVLSREQLLSQVWGFDY 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +P   I+DV+I  LR+K+     G + ++TV G GY LR
Sbjct: 181 DPGSNIVDVYIRYLRRKI-----GADRVQTVRGVGYRLR 214


>gi|116252719|ref|YP_768557.1| two component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257367|emb|CAK08462.1| putative two component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA ++   L         T    D +EL +   +DAI+LD  L D  G 
Sbjct: 1   MRILLIEDERELAEALSAALGKHGIVTDHTVHLVDAVELTRQNLYDAILLDRRLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +  LR     TP+ +L+  +  ++++ GL  GADDY+ KPF  EEL+AR+RA++RRS 
Sbjct: 61  SFIPELRRTGKDTPIIVLTARNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVLRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y+
Sbjct: 121 ELAELKITAGRMVIDPLHLSVTVDAVPLDLPRRELLVLAALARRKEQTVLRSTLEAAVYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   +D  I +LRK+L +   G   I  + G GY+++E
Sbjct: 181 YEEEIQSNALDAHISRLRKRLIDVGAGVA-IHNIRGVGYLMKE 222


>gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 124/236 (52%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           + LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +
Sbjct: 3   KALLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR   
Sbjct: 63  VCRDLR-AFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRR--- 118

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H+Q       +  G L ++   + V   G  + LT  E++M+  L+ +    LT++  LN
Sbjct: 119 HSQLEEPPERLEFGPLVIDRRTRAVVHGGVEVDLTTMEFEMLWALASQAGQVLTRDDLLN 178

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +    ++G D    + +DV + KLR+KL +       I+TVWG+GY+    A ++
Sbjct: 179 AVRGIEFNGLD----RSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLFSPKAHED 230


>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
 gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
          Length = 247

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE  +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  +S  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIR-EKHSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 140 NQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 243


>gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
 gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
          Length = 250

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+    I+D+ +  + G E+
Sbjct: 20  ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVMDGIEM 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R      P+  LS  S   DK+ GL  G DDY++KPF   EL+AR+ + +RR    
Sbjct: 80  TMKIR-ENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKY 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A +  V G L ++LD K V V G  + +T  E +++ELL  +     + 
Sbjct: 139 LNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFSS 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E    +++        + + V +  LR+K+        Y++ VWG GY
Sbjct: 199 EQIYENVWH-EAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGY 245


>gi|166365093|ref|YP_001657366.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087466|dbj|BAG02174.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 108/206 (52%), Gaps = 11/206 (5%)

Query: 28  YVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALR--------VAKISTPVC 76
           YV D+  DG E   + E   +D ++LD+ L  + G  + + LR         A  + PV 
Sbjct: 16  YVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGTLLCQRLRRAESHHPVSANATVPVL 75

Query: 77  ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNL 136
           +L+   ++ DK+ GL +GADDY++KPF+  EL+ARIRA++RR    +  L+  G L +N 
Sbjct: 76  LLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIRALIRRGSSTSSVLLSWGGLQLNP 135

Query: 137 DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICK 196
                   G  + LT KE+ ++ELL       L++   +  ++   D P  + +   I  
Sbjct: 136 STHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRSGIIERVWSLDDSPAEETVTSHIRG 195

Query: 197 LRKKLSNAAGGKNYIETVWGRGYVLR 222
           LR KL +    +++IETV G GY L+
Sbjct: 196 LRHKLKSLGAPEDFIETVHGLGYRLK 221


>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
 gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G D +   +  E D  ILD+ L DI GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL S ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIR-EKFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  I         D + + +          G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  R       +   I +LR+K+   +    +I+TVWG GY +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230


>gi|168205907|ref|ZP_02631912.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662604|gb|EDT15287.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKDFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +  ++ G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ LKSE +N      G + I++ +  + D +ILD+ + ++ G E 
Sbjct: 6   ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +LS  S   DK+ GL  GADDY+SKPFN  ELVAR+++ +RR    
Sbjct: 66  CLKIREMK-EMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYKF 124

Query: 123 A----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +++I   DL++NLD   V++    + LT  E+ ++ LLS  +    + E
Sbjct: 125 KNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSIE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++         + V I K+R+K+ +      +I+TVWG GY
Sbjct: 185 NIYESVWNQEFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGY 231


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDFEPK-LIHTVVGVGYMM 223


>gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
 gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++LI  G  ++NL  + +      I LT  E+ +++ L       L+++  
Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMIEIDAANPRYIQTVWGLGYVF 233


>gi|152983865|ref|YP_001349929.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150959023|gb|ABR81048.1| two-component response regulator [Pseudomonas aeruginosa PA7]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     GE+G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFRHLNGSGFEVTWCRDGEEGLAAARNGAYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQLREEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G A +      L    D   V + G    LT  EY+++E     +  TLTK   
Sbjct: 129 ERGQPPGRASAPQARAALQFAADVCDVSLGGTFADLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQQVLHRGHTQHDRSLDMHVSHLRRKLQRLGYHGHQLHTVWGKGYVL 235


>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL S ADDYI+KPFN  ELVAR++A +R+   
Sbjct: 64  ICQKIR-EKFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLELVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  I         D + + +          G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  R       +   I +LR+K+   +    +I+TVWG GY +
Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230


>gi|127511829|ref|YP_001093026.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126637124|gb|ABO22767.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 237

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++   + + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPQAESHCLSFGKLSIDPHTQAIRLGDLEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|293609424|ref|ZP_06691726.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827876|gb|EFF86239.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLEALATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDVMQRLVWIEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIQPRYIATEPGVG 228


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 12/221 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++ED+  + + ++L L  E ++V   + GE  I+L  FYE  FD +ILD+ L    G
Sbjct: 3   KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKL--FYEKPFDLVILDIMLPKKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + VLR ++    S PV ILS     ED++ G + G D+YI+KPFN + L+ARI+A+++ +
Sbjct: 61  WSVLREIKKYS-SVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +I  G + +N  + TV V G  + L  KEY+++  L       L+++  L  ++
Sbjct: 120 SNNTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVW 179

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G D P   + ID  I  LRKKL     G+  I+TV G GY
Sbjct: 180 -GYDFPGSDRTIDTHIKNLRKKL-----GEECIKTVRGIGY 214


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 120/233 (51%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  I + L+ E ++V     GE+ + + +    D +ILD+ +  + G+
Sbjct: 4   ISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +RV K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIRV-KYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRRFL 122

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q       S++  G + +NL+ + + V G +I LT KE+ ++ LL        + E 
Sbjct: 123 TLNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYSVEN 182

Query: 174 FLNHL-----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  +     YDG        + V I  LRKK+         I+TVWG GY  
Sbjct: 183 ILQQVWADDYYDGGST-----VAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTF 230


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L++ED+  L   +   L+   F V   + G+ G  L +  E   D ++LD  L  + G 
Sbjct: 9   VLVVEDEAPLVTLLRYNLEKSGFRV--DEAGDGGEALGRINEAMPDLVLLDWMLPTMSGI 66

Query: 61  EVLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           EV R LR  K ST   PV +L+  +  +D VRGL++GADDYI+KPF+ E L+ARIRA++R
Sbjct: 67  EVCRQLR-RKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLR 125

Query: 118 RS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS    A++ +V  DL ++     V   G  +HL   E++++E          ++E  LN
Sbjct: 126 RSGTAPARAPLVFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLN 185

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ GRD   E + +DV I +LRK + NA    + + TV   GY L
Sbjct: 186 AVW-GRDIHVEPRTVDVHIRRLRKSI-NAETDIDLVRTVRAAGYAL 229


>gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299]
 gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300]
 gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           132]
 gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754]
 gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819]
 gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796]
 gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR
 gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR
 gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR
 gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR
 gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR
 gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR
 gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR
 gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR
 gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR
 gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR
 gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315]
 gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781]
 gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus
           aureus A9763]
 gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299]
 gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115]
 gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300]
 gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus
           A6224]
 gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948]
 gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus
           A5937]
 gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3]
 gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30]
 gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus D139]
 gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A10102]
 gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator
           [Staphylococcus aureus A9765]
 gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117]
 gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus
           aureus subsp. aureus H19]
 gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus 04-02981]
 gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754]
 gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819]
 gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796]
 gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21172]
 gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21189]
 gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus
           21193]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF
Sbjct: 2   VQCLVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR  
Sbjct: 62  QLCNTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++ S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++ 
Sbjct: 121 INSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E + + +DV I +LR++L         IETV G+GY
Sbjct: 181 YDYEGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +    D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDAATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 15/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED + LA  IE  L +  + V +   G   ++L    + D ++LD  L  + G EV
Sbjct: 4   ILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR LR  +  TPV +L+  S   D+V GL+ GADDY++KPF+  EL+AR+RA++RR+   
Sbjct: 64  LRRLR-QESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTDLV 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  R  +   +  G L+++       + G  + LT  E++++ LL         + 
Sbjct: 123 RQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFGRS 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++  +   E + +D  + +LRKKL         IETVWG GY LR
Sbjct: 183 YLLDTIWGDQFVGE-RSVDNAVLRLRKKLGPLG---EAIETVWGVGYRLR 228


>gi|256395278|ref|YP_003116842.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256361504|gb|ACU75001.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 244

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  L   +   L+ E ++      G + +     Y+ DA++LD+ L D+ G E
Sbjct: 16  RFLVVDDEPDLVEVVCGALRHEGWDAVGAHDGREAVSAAATYQPDAVVLDMMLPDMDGME 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +  ++    V  L+   ++ED++ G+ +G DDY++KPF+ +E+V R+R++VRR+  
Sbjct: 76  VMRRIHTSRPEVRVLFLTARDAVEDRIAGIAAGGDDYVAKPFSLDEVVVRLRSLVRRTAR 135

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +   +V GDL ++  A+ V   G  I L+ KE+ ++  L       L+K   L
Sbjct: 136 GRTGRVASPDCLVVGDLVLDEAAREVTRGGEPIDLSPKEFSLLWFLMRHPRQVLSKSQIL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++      +  +++++I  LRKK+   AG    I TV G GYV++  A 
Sbjct: 196 AEVWSYDYGGQAHVVELYISYLRKKID--AGRPAMIHTVRGAGYVIKAAAP 244


>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIR-EKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 140 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +       + V I +LR K+        +I+ VWG GY
Sbjct: 200 ESVWKEKAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 243


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LDL L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A+ RR+ 
Sbjct: 64  CRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRTG 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R   +     G + V++DA    V G  + LT  E++++ +L  R     ++E  L  
Sbjct: 124 AGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLED 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   E E + +D  + +LR+KL +   G++ +ETV G GY L
Sbjct: 184 VWEMSSEVETRTVDTHVKRLREKLGS---GRDLLETVRGIGYRL 224


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +   L++  F V     G DG+E  + +    ++LDL L  + GF+
Sbjct: 5   RILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGMSGFD 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+   A    PV +L+      D++ GL+ GADDY+ KPF+  ELV RIRA+++R 
Sbjct: 65  VCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKRV 124

Query: 120 RGHAQSLIVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G AQ     G  +V+   LD  A  VEV G    LT  E++++  L   +    T++  
Sbjct: 125 TG-AQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRDQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LN ++    E   + +D  + +LR+K+   A     IET+ G GY  +E
Sbjct: 184 LNTVWGYEFEGYARTVDTHVRRLRQKIGRFAA---MIETIRGVGYRFKE 229


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGLPDMDGQQV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           LR  R    + PV +LS  +S   KV  L SGA+DY++KPF  +E +AR+RA++R++  G
Sbjct: 70  LREFREWS-TVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAPAG 128

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            AQ   ++ G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 129 EAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 189 PTHTEDSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  +ILDL L  I G 
Sbjct: 5   FKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV   +R    +  + +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+ 
Sbjct: 65  EVCSKIREFS-NVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAY 123

Query: 120 RGH---AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RG    A+ LI+  GDL V++    V   G  + LT  E++++  L        T+E  +
Sbjct: 124 RGKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    E   + +D +I  +R+K+ +     NYI TV+G GY
Sbjct: 184 EQAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGY 227


>gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 14  LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQLC 73

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 74  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 132

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 133 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWGYDY 192

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 193 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 227


>gi|238898864|ref|YP_002924546.1| response regulator in two-component regulatory system with CpxA
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|229466624|gb|ACQ68398.1| response regulator in two-component regulatory system with CpxA
           [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+D+K L  S++ +L+ E+F + V    ++   L      + +++D  +  + G +
Sbjct: 5   KILLIDDNKELTTSLKSLLEMESFELIVAHDAKEAFSLLD-NSINMVLIDTAIPKMNGID 63

Query: 62  VLRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L+ LR  KI   PV IL    S  D +  L+ GADDY++KPFN  EL+ARIRA++RR+ 
Sbjct: 64  ILKELR--KIYEMPVIILGKTDSNLDLILSLELGADDYLAKPFNNRELIARIRAVLRRTA 121

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + +S++   DL +NL  +     G  + LTG E+ +  LL+      ++KE
Sbjct: 122 SKEKEEIKINPESIVNIDDLQLNLGKQEARFSGQVLDLTGTEFSLSYLLAKNVGQVVSKE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   R  P  + ID+ I  LR+KL        + +T+ GRGY++   A
Sbjct: 182 QISQSVLGKRLAPFDRAIDMHISNLRRKLPERKDRYPWFKTLRGRGYLMVSEA 234


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  + + P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKSA 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+ ++      +NL  + +   G  + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N L  GRD   + + IDV + +LR+ L        YI+TVWG GYV   +  D
Sbjct: 187 MN-LARGRDYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVFVPDGSD 239


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L +E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + I++ GD+ ++ D   V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 ASPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ GRD   + + +DV I +LR KL N  G  + I TV G GY L E 
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLINPGGEPDPIRTVRGAGYALDER 228


>gi|78061618|ref|YP_371526.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969503|gb|ABB10882.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  I++    + D++ GL SGADDY+ KPF  +EL+ARIRA+ RR  
Sbjct: 61  SVLAALRRRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +V G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLVIGPLRLDPVKHLVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGYRIGDGA 220


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 129/232 (55%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DDK LA  +   L +E + +     GEDGIE  K + +D ++LD+ +  I GFE 
Sbjct: 6   ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGFET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R + I  PV +L+      D++ GL+ GADDY++KP++  EL+ARI+A++RR    
Sbjct: 66  LKRIRESSI-VPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELD 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
              +     ++    + +N D   V   G  I +T  E++++ +L  R    + KE ++L
Sbjct: 125 KNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLYL 184

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  GR+     + ID+ +  +R+KL      ++ I+T+ G GY+  + ++
Sbjct: 185 EVL--GREIMAYDRSIDMHVSNVRRKLGGTT-EQSKIQTIRGIGYMFVDPSQ 233


>gi|322514420|ref|ZP_08067463.1| transcriptional regulatory protein CpxR [Actinobacillus ureae ATCC
           25976]
 gi|322119668|gb|EFX91726.1| transcriptional regulatory protein CpxR [Actinobacillus ureae ATCC
           25976]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 19/237 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ DD  L   +  +L  E F+++    G+D +   +   +D I+LD+ +  + G E
Sbjct: 3   RILLV-DDVELTELLAELLSLEGFDIHCVHNGQDALTELELQAYDLILLDVMMPVLNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K STPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 62  TLKQLR-QKYSTPVLMLSARDDEIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTVS 120

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
              ++  +I + + S   ++K +   G  +H              LTG E+ ++++L   
Sbjct: 121 TSLNSADVITSANQSPEENSKQLSFGGVELHPGRQQAIFEGCDLDLTGTEFALLQMLMRN 180

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 181 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237


>gi|313238135|emb|CBY13233.1| unnamed protein product [Oikopleura dioica]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD+ LA  I   L    + V +   G DG+       + A+ILD+ L  + GF 
Sbjct: 8   KLLVIDDDRKLAGLIRDYLTPMGYEVEMRHTGPDGLAEAVEGNYQAVILDVMLPGMDGFG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR  K   PV +L+ +    D++ GL+ GADDY+ K F+  EL+AR+RA+ RR+R 
Sbjct: 68  VLRELR-KKSDVPVLMLTALGEEADRIVGLEIGADDYLPKTFSSRELLARLRAVTRRTRI 126

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +V G L +  +  TV +    + LT  E+ ++  L   K    T+E+ +  
Sbjct: 127 REDAGAVRELVAGPLRLCEETHTVILDDAPVDLTALEFAILAALLKSKGRVKTREILIEE 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   R +   + IDV +  LR+KL + A    +I T+ G GY L E
Sbjct: 187 VSARRFDVFDRSIDVHVSSLRRKLGDDAKSPRFIRTIRGVGYSLTE 232


>gi|332652639|ref|ZP_08418384.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517785|gb|EGJ47388.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 11/216 (5%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L+ +   V +        +L +   FD  +LD+ L D  G ++    R A+  
Sbjct: 14  GQAVKSALEQDGHAVALAHNAAQAQKLWQAVRFDLCLLDIRLPDGSGLDLCAGFRQAR-D 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV  L+   + ED VRG Q G DDY++KPF  E L  R+ A++RR+ G    +I   +L
Sbjct: 73  TPVIFLTANDADEDVVRGFQMGGDDYVTKPFAPEVLRQRVLAVLRRT-GSGAQIIRYQEL 131

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID- 191
            ++L+ +TV  QG  IHLT  E++++E L+  +   LT+ M L  ++D     E   ID 
Sbjct: 132 EIDLERQTVRRQGETIHLTATEWKLLERLARSRGRVLTRTMLLEQIWD----VEGSFIDE 187

Query: 192 ----VFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               V I +LR+KL        Y+ TV+G GY   E
Sbjct: 188 NTLSVHIRRLRQKLEPDPKNPRYVVTVFGLGYTFGE 223


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E+
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLSGIEL 64

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R LR A+  T   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR+RA++RR+
Sbjct: 65  CRRLR-ARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRRA 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H  +L+  GD+ ++ + K V   G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LRK L N     + I TV G GY   E
Sbjct: 184 WGQDVYIDERTVDVHVGRLRKAL-NRPRQPDPIRTVRGSGYSFNE 227


>gi|226362561|ref|YP_002780339.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226241046|dbj|BAH51394.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 222

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI ++EDD  + +++   L  +         G +   L    E + ++LDLGL D  G 
Sbjct: 4   MRIAVVEDDDGVGNALVAGLTRQAHQPVRMKFGSE--LLLHHGEVELVLLDLGLPDKDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      PV IL+        VRGL+ GADDY+ KP    EL ARI  + RR  
Sbjct: 62  EVLRQLRQVS-DIPVIILTARDDERSVVRGLRGGADDYLVKPARMAELFARIEVVRRRNL 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +RG A   +VTGD+ V+L++ TV V G  + LT KE+ ++E+L       ++++  ++ 
Sbjct: 121 AARGGAPRTVVTGDVRVDLESHTVTVAGTDVDLTSKEFALLEILLENPGAAVSRQQLMDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +DV I  LR KL+        + T+ G GY
Sbjct: 181 VWGDAFVAVSRTLDVHIGTLRAKLNR----PGLVSTIRGFGY 218


>gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQLC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 65  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 124 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWGYDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 184 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|312197786|ref|YP_004017847.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229122|gb|ADP81977.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + H++E  L+S    V +   G D + + +   FD ++LDLGL D  GFEV
Sbjct: 4   LLVVEDDETIGHALEASLRSHRHAVTLATTGADAVAVGERASFDLVLLDLGLPDRDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     T + IL+      D V GL++GADDY+ KPF   EL ARIRA +RR    
Sbjct: 64  CRDLRSRLPGTVIVILTARDEEIDVVVGLEAGADDYLVKPFRSAELAARIRAHLRRGDAS 123

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A+++  +V G L V+  A+   +    I L  +E+ ++  L+      LT+++ +  ++D
Sbjct: 124 AEAVGQLVVGGLRVDGPARRAWLAEVEIVLRAREFDLLARLASEPGRVLTRDVLMRDVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVL 221
                  K +DV +  LR KL+ AA         I TV GRGY L
Sbjct: 184 EHWFGSTKTLDVHVSALRAKLAAAADQALAVAPEIVTVRGRGYRL 228


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT-----T 168
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+           
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++++ +  Y+G +      + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGN-----TVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD+ +   I+  L ++ + V V   G +G+       FD ++LD+ + ++ GFEV +
Sbjct: 1   MIEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D ++LD+ +  + G  
Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 167

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 168 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 227

Query: 121 GHAQSLIVTGD--------LSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLT 170
             A     +GD          + +D  T EV +G R + LT  E+ ++ELL       LT
Sbjct: 228 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 287

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 288 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 338


>gi|309812003|ref|ZP_07705769.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434061|gb|EFP57927.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 242

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ L  S+      + + V     G   + L +    D ++LD+GL D  GF+
Sbjct: 17  RVLIVDDEEGLLASLSAAFTFQGWQVLTATTGSQAVALARRESPDVVVLDIGLPDTDGFD 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  +R       V  L+   ++ED+V G++ GADDY++KPF+ EE++ R  A++RRS  
Sbjct: 77  VLARIRSILPEAGVIFLTARDALEDRVSGIRQGADDYLTKPFSLEEVIVRAEALMRRSGM 136

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +G  + L+V  DL +N     V   G  I LT  E+ +   L+       +K+  L  
Sbjct: 137 VAQGQGEHLVVD-DLVINTLTYEVSRAGEPIRLTATEFALARHLAQNARRVCSKQELLAA 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    +    +++++I  LRKK+  +      I TV G GY +R  A
Sbjct: 196 VWGEDFQGGEHVVELYISYLRKKIDGSH--PALIHTVRGLGYTMRPAA 241


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  +   +++ L+ E + +     G + IE     ++D I+LDL +  I G E
Sbjct: 6   RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++LIV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  ++     I TVWG GY
Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGY 231


>gi|262279528|ref|ZP_06057313.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259879|gb|EEY78612.1| KDP operon transcriptional regulatory protein kdpE [Acinetobacter
           calcoaceticus RUH2202]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 122/218 (55%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D+  +   +++ L+++ +   + + G  G+E       D +ILDLGL D+ G E
Sbjct: 12  RIVIIDDEPQIRKFLDIALRTQKYKTTLCETGYKGLETLATQGADLVILDLGLPDLDGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  + PV +LS  +   +KV  L +GA+DY++KPF+ +EL+ARIR I+R    
Sbjct: 72  VLQELR-SWSNVPVIVLSVRADEYEKVALLDAGANDYMTKPFSVQELLARIRVILRNQPI 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L V++  + V ++   I LT KE+Q++ LL   +   LT+   L  L+ 
Sbjct: 131 QQEAHVYDDGYLKVDVMQRLVWIEQQPITLTRKEFQLLTLLMRYQGQLLTQPQLLKELWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              + +   + + + KLR KL + A    YI T  G G
Sbjct: 191 PTHQEDTHYLRILVGKLRSKLGDNAIHPRYIATEPGVG 228


>gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 214

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + +E    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-RESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  ++++   
Sbjct: 124 QRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|296156679|ref|ZP_06839517.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893278|gb|EFG73058.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ S+   L S    V     GE    + +  ++  +ILD+GL  + G 
Sbjct: 1   MRVLLVEDNPILSRSLTDALTSAKLTVDCMHDGESADHVLRTQDYALVILDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + + PV +L+   S+E++VRGL  GADDY++KPF   EL AR RA++RRS 
Sbjct: 61  EVLRRLRARRNAVPVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G        G L  +   +   + G  + LT +E  ++E+L LR    + K+     ++ 
Sbjct: 121 GQEPLHAQCGTLLYDSVDRGFTLDGEALALTPRERSVLEVLILRNGRAINKDTLSEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LR+KL  ++ G   I T+ G GY+L
Sbjct: 181 LDESVNADAIEIYVHRLRRKLERSSVG---IVTLRGLGYLL 218


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ L   +   L++E F V     G++     +    D ++LD  +  + G E
Sbjct: 4   RILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLSGIE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      D+VRGL +GADDYI KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  V  +G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LRK + N     + I TV G GY   E
Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAI-NRPRRPDPIRTVRGSGYSFDE 227


>gi|256790279|ref|ZP_05528710.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289774154|ref|ZP_06533532.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289704353|gb|EFD71782.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  +   L+ E ++V      +  +   + +  DA++LD+ L D  G 
Sbjct: 16  VRVLVVDDEPDLAEVVTGALRYEGWDVRAAASADAAVREARAFRPDAVVLDIMLPDRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VLR LR  +    V  L+   ++ED++ G+ +G DDY++KPF+  ELVAR+  ++RR  
Sbjct: 76  SVLRDLRAEQPHVCVLFLTARDAVEDRITGITAGGDDYVTKPFSLGELVARLHGLLRRAG 135

Query: 119 -SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +R  A  SL+V GDL ++ DA  V   G  I L+  E+Q++  L       L+K   L+
Sbjct: 136 MTRERATDSLLVVGDLELDEDAHEVTRGGDLIDLSPTEFQLLRCLMRHARQVLSKTQLLD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++         ++++++  LRKK+ +  G    I TV G GYVL+   +
Sbjct: 196 LVWSYDFGGRAHVVELYVSYLRKKIDS--GRAPMIHTVRGAGYVLKPAPQ 243


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++L   +   L++E F V V   G++          D ++LD  +  + G E+
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIEL 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 66  CRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRAK 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H   ++V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ ++
Sbjct: 126 PTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 186 GHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 228


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A    +   LK+E + V V   GE G+ + +    D I+LD  L  + G EV
Sbjct: 6   VLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHVSGIEV 65

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   DKVRGL++GADDY+ KP+   EL+AR+R  +RR R
Sbjct: 66  CRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVR 125

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++T  D++++ D   V      + L   E++++     +    L++E  L+ ++
Sbjct: 126 PSKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQVW 185

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 186 -GRDVYVDTRTVDVHVGRLRKVLTQ-HGGDDPVRTVRGAGYAL 226


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L++E F V     GE+ + +      D ++LD  L ++ G EV
Sbjct: 8   VLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIEV 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRAR 127

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  L +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV I +LRK LS   GG++ + TV G GY L
Sbjct: 188 -GRDIYVDTRTVDVHIGRLRKALSQ-HGGQDLLRTVRGAGYAL 228


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 17/235 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 15  VLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDGLQV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ G+
Sbjct: 75  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRT-GN 133

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTL 169
           A      +    +G +SV      ++VQ  R       + LT  E+ ++ELL       L
Sbjct: 134 ASLDAPKEEPSPSGQVSVA--GLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVL 191

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + ++     P  K + V++  LR+KL +  G    I TV G GYVLRE+
Sbjct: 192 DHTTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DQPGAPALIHTVRGVGYVLRED 245


>gi|332528510|ref|ZP_08404498.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332042021|gb|EGI78359.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD+ L   + +  +     +  +   ++G+   +   FDA+ILD+ L  + GFE
Sbjct: 3   RVLLLDDDEQLGPPLTVYCQRFELALAQSLRPDEGLARLRTEHFDAVILDVMLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   P+ +L+    + D+V GL+ GADDY+ KPF   ELVAR++ ++RR  G
Sbjct: 63  VCRTLR-KESDIPIIMLTARGDVMDRVVGLELGADDYLPKPFEPRELVARVQTMLRRRHG 121

Query: 122 H--AQSLIVTGDLSV------NLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 ++  G+ SV       LDA  ++V  QG  + LTG E++++ LL+       ++
Sbjct: 122 QNGPPVMVTAGEPSVLSFEGLTLDAARRSVLRQGQAVELTGTEFELLHLLARESGRVFSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  L  L     E   + +D+ + +LRKKL       + I+T+   GY L
Sbjct: 182 DDILTQLRGHDAELYTRAVDIVVSRLRKKLEPL----DCIKTLRNAGYTL 227


>gi|229488630|ref|ZP_04382496.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229324134|gb|EEN89889.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 9/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +  + +L L+   F V     G  G+++    + D  +LD+ L D+ G  +
Sbjct: 6   ILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDMAVDAKPDIAVLDVMLPDLNGISL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  ++S PV +LS      D V GL++GADDY++KPF+   LVARIR+++RR   H
Sbjct: 66  CRRIR-EELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVESH 124

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + ++  GDL ++ +  TV   G  + LT  E +++ ++        ++   L+ ++
Sbjct: 125 SGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLVMVSVPRKVWSRSELLSDVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     + +I+DV + +LR K+     G   I TV G GY +
Sbjct: 185 DYDWGGDTRIVDVHVQRLRTKI-----GSEQIRTVRGFGYTM 221


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           +L++ED+++LA  +  +L+ E F   V     DG E  + ++    D ++LDL L  + G
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVV---TDGAEALRHFDSAGADIVLLDLMLPGMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +V + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR 
Sbjct: 61  TDVCKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G    ++  G + ++++   V V G  + L  KE+ ++E L       LT+  
Sbjct: 120 ADTAGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 180 LIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKL 227


>gi|194289457|ref|YP_002005364.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424]
 gi|193223292|emb|CAQ69297.1| putative response regulator, CheY family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L+  ++ V     G D         +DA++LDLGL    G 
Sbjct: 1   MRLLIVEDDPMLGDGLRRGLQLLDYAVDWFRNGTDADHALGLAHYDAVVLDLGLPGEDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV +L+   +++ ++ GL +GADDY+ KP   +EL AR+RA+ RR+ 
Sbjct: 61  TLLARWRARGSRIPVIVLTARDAVDSRIGGLDAGADDYLVKPVALDELAARLRAVTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +   G L+ +  A+    QG  + LT +E  ++ELL    N  LT+E+  + LYD
Sbjct: 121 GMSAPVWQHGALTFHPAARQAYWQGKPVELTSREAMLLELLLAHPNRLLTREILRDKLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   E   ++V I  LR+K+         + T  G GY L
Sbjct: 181 WQGGIESNALEVHIHHLRRKIH-----PKIVRTFRGAGYTL 216


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L++E + +Y     ED +   +    D  +LD+ +  I GFE
Sbjct: 25  KILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKINGFE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV +L+      DK++GL  GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 85  ICKMIR-EKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + Q     ++I    L ++ D+  V +    + LT  E+ ++  L   +   +T E    
Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 204 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 250


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ +E       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR  G
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRM-G 122

Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S+  T            G L V+ + + V   G RI LT  E+ ++ELL       +
Sbjct: 123 PTVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVV 182

Query: 170 TKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 183 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51]
 gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L +D++++   +E ++  + ++      G + + + +    D +ILD+ +  + GF
Sbjct: 1   MKIMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAENPDLVILDVMMPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ ILS    I DK  G ++GADDY+ KPF+  EL  RI A++RR  
Sbjct: 61  DVCTQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALLRRRE 120

Query: 121 ------GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 G A+   I  GDL +        ++G R+ LT KE++++  ++       T+E 
Sbjct: 121 HQTGGAGEAEKESIKLGDLEILFKRYEARLKGKRVELTPKEFKILAYMAGHPGEVFTREQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L +++      E+  I VFI K+R+K+        Y++TVWG GY   E 
Sbjct: 181 LLTYVWGEDYVGELTGIAVFIRKIREKIEEDPSKPKYLQTVWGVGYKFGEK 231


>gi|91975146|ref|YP_567805.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gi|91681602|gb|ABE37904.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 7/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V     G+  +EL K      IILDLGL DI G 
Sbjct: 6   LKILIVDDEPPIRKLLRMGLGTQGYEVLEASNGKIALELLKQGPA-LIILDLGLPDIQGH 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR +R    S P+ +LS       KV  L  GADDY++KPF  +EL+AR+RA +R   
Sbjct: 65  ELLRMIRGRNDSVPIVVLSSRGDEAGKVEALDLGADDYLTKPFGMDELLARMRAALRHQL 124

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + H +  +  +GDLSV+L  + V+V    + L+ KEY ++ +L       LT +  L  L
Sbjct: 125 QVHGERPVFRSGDLSVDLVRRLVKVGDRDVKLSPKEYDLLRILVQHAGKVLTHKFLLGEL 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +D     + + + V++ +LR+K+        ++ T  G GY LR  A D+  +
Sbjct: 185 WDPLT--DAQYLRVYVRQLRQKIEADPERPQFVLTETGIGYRLR--APDDPAK 233


>gi|320107952|ref|YP_004183542.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926473|gb|ADV83548.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A ++   ++   + V      E+G  L    + + ++LDL L    G +
Sbjct: 7   KILIIEDDRKMAAALVAGMEPAGYEVATASSAEEGFFLVHTLQPNLLLLDLTLPHRSGLD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R   +   V +L+  +++ED+V GL SGADDY+ KPF+  EL+ARI+A++RR+  
Sbjct: 67  ILKQIRREGLDLRVLVLTSHNTVEDRVEGLSSGADDYLGKPFSFPELMARIQALLRRTLP 126

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I  GDL ++  +K       R+ LT +E+ ++  L+  +  T+++EM    ++ 
Sbjct: 127 TPDTSAIQIGDLEIDAKSKVAHRASVRLELTPREFDLLLYLAENQGRTVSREMLAKDVWQ 186

Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              R  P   +IDV + +LRKKL +    K  ++T+ G G+ LRE
Sbjct: 187 ESSRFTPIDNVIDVQVARLRKKLDDPYPTK-LLQTIRGVGFSLRE 230


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L+ E F V   + GE  + L K      +ILDL L  I G E
Sbjct: 6   KILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPRISGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+  S  EDK+ GL  GADDY++KPF+  ELV R++A++RR+  
Sbjct: 66  ICNKIRAVS-DVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +       L   GDL V +    V+  G  ++LT  E++++  L        ++E  + 
Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +    E   + ID +I  +R+K+ +      YI TV+G GY
Sbjct: 185 KAFGEDYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGY 227


>gi|312870288|ref|ZP_07730416.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
 gi|311094172|gb|EFQ52488.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 22/242 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M IL+IED+ ++   + + LK +N+     +   DG+E  + +     ++D I+LDL L 
Sbjct: 1   MNILMIEDNHSVCEMMAMFLKKQNWQY---EFAYDGVEAEEKFNAAPDKWDVILLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+
Sbjct: 58  KKDGMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKT-----------VEVQGHRI-HLTGKEYQMIELLSL 163
            RRS+   Q     G    + D KT           V +   +I  LT KE+ +++ L+ 
Sbjct: 118 YRRSQLAKQPAEQPGTADRDFDVKTKNFRMNTKTREVFLYDQQIDDLTPKEFDLLKTLAS 177

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     T+E  L  ++D     + + +D  I KLR+KL +   G   I+TVWG GY   +
Sbjct: 178 KPRQVFTREQLLQLVWDYEYYGDERTVDAHIKKLRQKLEDL--GPQVIKTVWGVGYKFDD 235

Query: 224 NA 225
            A
Sbjct: 236 EA 237


>gi|317052735|ref|YP_004113851.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316947819|gb|ADU67295.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 3/205 (1%)

Query: 2   RILLIEDDKALAHSIEL-MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILLIED + L   +E  +++   F V   D   D + + +  E D I+LDL L  + G 
Sbjct: 3   RILLIEDQEELRELVEYNLVRDGQFQVESVDNANDALMMLEDIEVDLILLDLMLPGLSGL 62

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E LR L+  V +   PV I+S  S  +D V GL  GADDYI+KPF+ + L A++ A++RR
Sbjct: 63  EFLRILKNSVERSEIPVIIISAKSGEQDIVTGLSLGADDYITKPFSMKVLKAKVDAVLRR 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H    +  G +S++++     V G+ + LT KE++++ L   R      +   L+ +
Sbjct: 123 ALHHDNRTVAYGSISIDMETHKAYVDGNEVVLTMKEFELLHLFLKRPKKVFHRNQLLSSI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203
           +    E   + +D  I  LRKKL +
Sbjct: 183 WGYDSEVYTRTVDAHISSLRKKLGD 207


>gi|227824850|ref|ZP_03989682.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905349|gb|EEH91267.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 111/201 (55%), Gaps = 2/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL ED+KA++ +I  +L    + V     G + +E      +D +I D+ +    G 
Sbjct: 1   MNILLAEDEKAMSMAISAVLTHSGYTVDTVQNGAEAVEAAAQKPYDCLIFDIMMPIKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R +   TP   L+  S ++D++ GL +GADDY++KPF   EL+ARIR++ RR +
Sbjct: 61  TALSEIRQSGNETPAIFLTAKSEVDDRIMGLDAGADDYLTKPFAMGELLARIRSMTRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L  TG L++ +    +      + L+ KE  +++LL L +  TL+ E+ L+H++ 
Sbjct: 121 KDREDL-TTGTLTLKVGEGELSCTSS-VRLSAKETALMKLLMLNEGKTLSTELLLSHVWQ 178

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             +E    ++ ++I  LR+KL
Sbjct: 179 DEEEKGPGVVWIYISYLREKL 199


>gi|167841171|ref|ZP_02467855.1| response regulator [Burkholderia thailandensis MSMB43]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD A+A ++   L+S  F+V V   G  G++      +DAI+LD+ L  + G 
Sbjct: 1   MKVLVIEDDAAIAANVYDYLESRGFHVDVARSGPAGLQFALADAWDAILLDISLPGMDGL 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR  A   TPV +L+   +++DK+ G + GADDY+ KPF+ +E+ AR+ A+++R 
Sbjct: 61  TLCRKLREEAHRDTPVLMLTARDALDDKLSGFEHGADDYLVKPFSLKEVAARLDALIKRY 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG  A   +   D+ ++L    VE  G  I L  K   ++ +L L      T+      +
Sbjct: 121 RGRVAVPELRFADVRLDLGTLAVERAGRPIKLQPKCLHLLRILMLSPARVFTRAELETEV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + G + P    +   I  LRK L+   G    IETV G GY L     D
Sbjct: 181 W-GDELPGSDTLRAHIYMLRKALTR-PGEAELIETVHGLGYRLMAGDTD 227


>gi|157369487|ref|YP_001477476.1| DNA-binding transcriptional activator KdpE [Serratia proteamaculans
           568]
 gi|157321251|gb|ABV40348.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  ++ EDK+  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGS 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q   L+   +++V+L  + V  QG  +HLT  E++++  L       LT+   L+H++ 
Sbjct: 127 LQESPLVSFSEITVDLINRRVLRQGEDLHLTPIEFRLLAELLANSGKVLTQRQLLSHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEADPARPKHLLTETGVGY 225


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDFEPK-LIRTVVGVGYMM 223


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D ++LD+ +  + G  
Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 165

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 166 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 225

Query: 121 GHAQSLIVTGD--------LSVNLDAKTVEV-QGHR-IHLTGKEYQMIELLSLRKNTTLT 170
             A     +GD          + +D  T EV +G R + LT  E+ ++ELL       LT
Sbjct: 226 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 285

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 286 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 336


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDFEPK-LIHTVVGVGYMM 223


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  + + L+ E + V     G++ I++ +    D +ILD+ +  + GFEV
Sbjct: 6   ILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKMDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  K + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRRIR-EKHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRRFMKL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    S +  G L+++ + +TV + G  I LT KE++++ LL+   N     E    
Sbjct: 125 NQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRAEDIFQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V I  LRKKL         I+TVWG GY
Sbjct: 185 KVWGDAYYEGGNTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGY 227


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ LK + F V     G + +++ + +  DA ILD+ +  + GF 
Sbjct: 9   RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   +++D++ GL  GADDY++KPF+ EE+V R++ I+RR   
Sbjct: 69  LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I   DL+++ ++  V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  +++ ++  LR+K+       + I+TV G GYVLR
Sbjct: 189 WNYDFGGDGNVVESYVSYLRRKVDKDE--PHLIQTVRGVGYVLR 230


>gi|21230181|ref|NP_636098.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21111717|gb|AAM40022.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   +++ L+++ + V      E+G+        + ++LD+GL D  G E
Sbjct: 12  RVLIIDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLATLAGQGAELVVLDIGLPDRDGHE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIRA++R++  
Sbjct: 72  VLREIRQWS-SVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 131 GNTVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQLLREV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 191 WGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVG 230


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   ++  L+ E + V     G+  +      +++ +ILD+ L D  G E
Sbjct: 6   RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+   S  DKV GL+ GADDYI+KPF   EL+AR++A +RR   
Sbjct: 66  VCRTIREI-TNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124

Query: 119 --SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             S G A+S  ++  GDL ++ D   V  +   + LT  E++++ LL+       TK+  
Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N ++ G D  E    + V I +LR K+ +      +IETVWG GY
Sbjct: 185 FNKVW-GDDYLEADNNVMVHIRRLRTKIEDDPKNPEFIETVWGIGY 229


>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 244

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +ILL++DD+ L   +   L++E F V     G+   E L +  EFD ++LD+ +  + G 
Sbjct: 7   KILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIMMPGMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR++R AK   P+ +L+G     D++ GL+ GADDY+ KP N  EL ARI+AI+RR+ 
Sbjct: 67  DVLRSVR-AKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125

Query: 121 GH------AQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + ++ T    + LD   +T  V    + LT  E+  + LL  R   T++K+
Sbjct: 126 NSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQTISKQ 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + +   E   + +DV I ++R+KLS + G  + I+++ G GY
Sbjct: 186 DMTQEVLNRPLEAYDRAMDVHISRIRQKLS-SEGINDVIKSIRGVGY 231


>gi|328542159|ref|YP_004302268.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326411909|gb|ADZ68972.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L+ED++ L   IE  L  +   V V + GED          D  I+D+ L  + G 
Sbjct: 1   MRIALVEDNRNLCRGIENALLDQGHAVDVLNNGEDADRFLATQGADLAIVDVNLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR+ K + PV IL+      DKV GL +GADDY+ KPF+  EL+ARIRA+ RR +
Sbjct: 61  QVVRNLRLRKSAMPVLILTARGDTGDKVAGLDAGADDYLVKPFDMAELLARIRALSRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  V G L+ N  A+ +      + L  +E  + E L       +TKE     LY 
Sbjct: 121 TLKPVEEVIGSLTYNRAARKLCGTRGTLDLPRREMALFECLLDNAGRVVTKETIAETLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   +++ + +LR+KL +       I T  G GY+L
Sbjct: 181 SGSDIEPNAVELLVSRLRRKLHDTG---VEIRTARGLGYLL 218


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +   V   G  G+   +  + D I+LDL L  + G EV
Sbjct: 4   VLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ A+++   PV +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RR  
Sbjct: 64  CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+   ++ G L ++++   V V G  + LT  E++++  L+ R     ++E+ L +++
Sbjct: 124 PAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +D  + +LR KL  AAG    I+TV G GY L E+
Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKL-GAAG--ELIKTVRGFGYKLEES 225


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL++ED+++L+  +  +L  E F+V V     DGI     ++    D ++LDL L    
Sbjct: 3   QILMVEDEESLSDPLAYLLGREGFDVTVV---ADGIRAVAEFDRAGADLVLLDLMLPGQS 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R  + + P+ +L+   +  DKV GL+ GADDY++KP++  ELVARIRA++RR
Sbjct: 60  GTEVCKQIR-QRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRR 118

Query: 119 SRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            R   + LI +    G + ++++   V V G  + +  KE++++E+L       LT+   
Sbjct: 119 -RAEPEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV + +LR K+        +I TV G GY
Sbjct: 178 IDRVWGSDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGY 222


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  L   +   L++E + V   + GE+ +   +   FD ++LD+ L  + GFE 
Sbjct: 6   ILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGFEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R A    P+  LS      DK+RGL  G DDY++KPF+  E+VAR++A++RR R  
Sbjct: 66  CRAIR-AFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRPS 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+     G L+++     V   G  + +T KE +++  L+       ++E   + ++   
Sbjct: 125 AEQWRF-GPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWGDF 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +P  + + V I ++R+K+        +I+TV G GY
Sbjct: 184 GDP--RTVTVHINRIREKIEADPSRPQFIQTVRGLGY 218


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +     G + +E     ++D I+LDL +    G E
Sbjct: 6   KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR  K +TPV +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCRELRERK-ATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ +IV   L+++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGY 231


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 228


>gi|315127778|ref|YP_004069781.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016292|gb|ADT69630.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L ++ F++     G+ G+EL    ++  I+LD+ L  I GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLSAQGFSIQTAHDGQQGLELALQNDYALILLDVMLPSIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ LR +K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQSKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +    +    +++N  A+   V    + LTG EY+++ LL       ++KE  
Sbjct: 120 HINSVSNNNNKKLSLNGITINFAAREASVNNTTLTLTGTEYEILALLVKHAPDVISKEQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R     + ID+ +  +RKK++    G+  I+T+ G GYV 
Sbjct: 180 SEEVLGRRLASFDRSIDMHVSNIRKKIAEHIAGEK-IKTIRGTGYVF 225


>gi|268608799|ref|ZP_06142526.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +IEDDK ++  +  +LK   ++      G   ++L K   FD +++DL L  + G  +
Sbjct: 5   IAIIEDDKDISSILANILKKNGYSYKQAYDGSQAMKLLKNESFDIVLMDLMLPYVNGETL 64

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  LR  KIS TPV ++S  S +E K+  L+ GADDYI KPF+  E++ RI  ++RR + 
Sbjct: 65  IYELR--KISDTPVIVISAKSMMETKLEVLRLGADDYIIKPFDINEVIVRIEVVLRRVQT 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++ +G L + L     E +G  + LT KE  ++EL       T TK      +++
Sbjct: 123 TKEKDVLESGGLKLILTENRAEYEGKPVQLTAKEMSLLELFMKNPKKTYTKAELYESVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E   I+V +  LR KL   + G+ +IETVWG GY LR
Sbjct: 183 DVYYYEDNTINVHVSNLRNKLKKVS-GREHIETVWGIGYRLR 223


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +   +   L+ E F V     G  G+ +      D ++LDL L  + G +
Sbjct: 3   RILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDGCD 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L+   ++   PV +L+      D++ GL  GADDY+ KPF+  ELV RIRAI+RR 
Sbjct: 63  VCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRRG 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           SR    + +  G L ++++A  V + G  + LT  E++++E L        T+E  LN +
Sbjct: 123 SRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E   + +D  + +LR KL   A     +ETV G GY LR
Sbjct: 183 WGYSFEGYARTVDTHVRRLRAKLGEEAAA---LETVRGVGYRLR 223


>gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
 gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
          Length = 246

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K L   I   L    + V V + GE+ +++     +D I+LDL L  + G 
Sbjct: 21  VRLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGM 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S I DK+ GL +GA+DY+ KPF+ +EL AR+R++ RR  
Sbjct: 81  EILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRKF 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    +  ++  +    + + + LT KE  ++E L L +   +++E  + H++D
Sbjct: 141 IQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVWD 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                    I V +  LR+KL  A  G + I    G GY +  ++K
Sbjct: 201 SSVNSFSGSIRVHMSSLRRKLK-AGLGYDPIVNRIGEGYKIGGDSK 245


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++++ED++AL   ++  L  E + V     GE+   L +    D I+LD  L  + G E+
Sbjct: 46  VMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLSGIEL 105

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +++      D++RGL  GADDY++KPF+  EL+ARIRA++RR R
Sbjct: 106 CRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMRRIR 165

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + L+  GD+ ++  A  V      +HL   EY++++ L        ++E  L+ ++
Sbjct: 166 PALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLDTVW 225

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV + +LRK L N  G K+ I TV   GY L E 
Sbjct: 226 GSDVYVEARTVDVHVGRLRKAL-NDKGEKDPIRTVRSAGYSLDEQ 269


>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
 gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L   +E  L+ EN   YV D  +DG     + +     +   I D  + 
Sbjct: 1   MRLLLVEDEPDLGMVLEKALRREN---YVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LR  + S P+ +L+    I D+V GL +GADDY+ KPF   EL+AR+R++
Sbjct: 58  GLSGLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSL 117

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKT---VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            RRS       +  GD    LD  T   V     +I LT KE+Q++E         L+ E
Sbjct: 118 QRRSPELQPQQLQVGDW--RLDYGTFVVVTPDKQQISLTAKEFQLLEYFMKHPQQILSSE 175

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              N L+    E    ++   +  LR+KL   + G N IETV+G GY
Sbjct: 176 QIKNQLWALSAESTSNVVAAQVRLLRRKLGEYSHG-NLIETVYGLGY 221


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +  I+DK++G  SGADDY++KPF+ EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +       G  I LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++    + +++ I V I  LR KL        +I+TV+G GY L
Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCL 229


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I  +L+ E + V     G++ I   +   FD IILD+ L DI G +
Sbjct: 5   KILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDIDGID 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   + T +  L+  +   DK+ GL+ GADDYI+KPF+  EL AR++A +R+ + 
Sbjct: 65  VCRKIRDKFLGT-IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQK- 122

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              SL +  D       + +N ++  V V   RI L+ KE+Q++  +    N  LT+E  
Sbjct: 123 RLNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            N ++   D  ++  + V I KLR+K+    G   +I+TVWG GY
Sbjct: 183 YNSVWGFGDFGDINTVTVHIKKLREKI---PGCDRFIKTVWGIGY 224


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +   I    K E ++V+  + G   +EL +    D I+LD+ + ++ G+ V
Sbjct: 5   ILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K   P+ +++  +  ED++ G + GAD+Y++KP +   LVAR  A+++R+   
Sbjct: 65  CRRIR-EKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTERT 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    L+  G+LSVN +A TV V G  I+L+ KEY ++  L       L+++  LN ++
Sbjct: 124 VGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +++ +D  I KLR KL +A      I TV   GY     A
Sbjct: 184 GYEYLGDLRTVDTHIKKLRAKLGDAG---KLIATVIRSGYRFESEA 226


>gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVIEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L+ E F+V   + G+ G+EL + +    IILD+ L  + GFEV
Sbjct: 6   ILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPALDGFEV 65

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  +    + PV +L+      D+V GL  GADDY+ KPF+  EL+ RI+AI+RR  
Sbjct: 66  SRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRRGG 125

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+S L+    + +  DA T       + LT  E++++E L     T  T+E  LN+++
Sbjct: 126 RVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNNVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E   + +D  + +LR KL  AA     +ETV G GY +RE
Sbjct: 186 GYSFEGYARTVDTHVRRLRSKLGEAAAA---LETVRGVGYRIRE 226


>gi|251789641|ref|YP_003004362.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247538262|gb|ACT06883.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 227

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD AL H +   L +   +  +   G + ++  +   +D ++LD  L  + GF
Sbjct: 1   MRVLVVDDDSALCHWLGAKLHAHGHSCRLIHDGAEALQAIEQEVYDVVLLDRMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            VLRAL+  +   PV +LS +    D+V GL+ GA+DY+ KPFN  EL  R+  IV R  
Sbjct: 61  SVLRALQ-GRPHPPVMLLSALDRDVDRVMGLELGAEDYLGKPFNLNELRLRLDIIVGRDK 119

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R H Q  ++T  DL V+   ++V   G RI LT KE +++ +L       +++ + L  +
Sbjct: 120 RRHEQRQVLTFADLKVDCLQRSVWRGGKRIELTDKEIKLLMILMEHPGKVISRTLLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  + +P+  +IDV + KLR K+         I+T+   GY L E  K
Sbjct: 180 WGYQFDPQTNLIDVHLSKLRAKIDKGF-SLPLIKTLRSVGYCLGEIEK 226


>gi|114326850|ref|YP_744007.1| two-component response regulator kdpE [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315024|gb|ABI61084.1| two-component response regulator kdpE [Granulibacter bethesdensis
           CGDNIH1]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   +   L ++++ +     G   ++     + D ++LDLGL D+ G EV
Sbjct: 6   VLIVDDEPAIRRLLRTTLGTQSWRITEAASGAGAMQALAEQKPDLVLLDLGLPDMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + PV ILS   +   KV   + GADDY++KPF   ELVAR+R  +R S   
Sbjct: 66  LQHIRKTAPTLPVVILSARDNERGKVAAFEMGADDYVTKPFGMAELVARLRTALRHSLQT 125

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +L   V+GDLSV+L  + V   G  I L+ +E+ ++ +L       LT +  ++ L+ 
Sbjct: 126 EGTLPVFVSGDLSVDLVRRHVFKGGDEIKLSPREWDILRMLVQHAGKVLTHQHIMSKLWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +   +V+ + V+I ++R+KL +      YI T  G GY L E
Sbjct: 186 AQG--DVQQLRVYIRQIRQKLESNPEQPRYIVTETGIGYRLVE 226


>gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 25/238 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +++   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-----------------LTGKEYQMIELL 161
                Q      DL  N+ +   +++ + I                  LT KE+ ++  +
Sbjct: 121 VMLEGQP----RDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTM 176

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + +     ++E  L  ++      E + +D  I KLR+KL  +  G   I+TVWG GY
Sbjct: 177 AQKPKQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEKS--GPQIIQTVWGVGY 232


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 9/235 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L  +I   L+ E ++V V D GE  +E   F   D +ILD+ L  + GF+V
Sbjct: 4   ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR--------A 114
            R LR  + + P+ IL+   +  D+V GL+ GADDY++KPF+  EL+AR++         
Sbjct: 64  CRQLR-EQSTVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRRELL 122

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G +  ++  G L ++L+ + V  +G  + L  +E+ ++  L+  +      E  
Sbjct: 123 ARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++      + + + V +  LR+KL +       IETV G GY L   +   T
Sbjct: 183 LRAVWGYDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRLTARSPQAT 237


>gi|154687499|ref|YP_001422660.1| SpaR [Bacillus amyloliquefaciens FZB42]
 gi|154353350|gb|ABS75429.1| SpaR [Bacillus amyloliquefaciens FZB42]
          Length = 220

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 117/219 (53%), Gaps = 7/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL I+D+K +   I  +L+ +   V + +  ED   L  F  +D I+LD+ +    G E+
Sbjct: 4   ILAIDDEKDILVLIRNILQRDQHTVTILEKAEDQ-SLDFFQGYDLILLDVMMPGTDGIEL 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R   + +P+  L+  S  E  V+GL +GADDYI+KPF  +EL+AR+ A VRR R  
Sbjct: 63  CRRIR-PLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVQELMARVNAHVRRERRE 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +++G    + D K V +   ++ LT  EY+++E L+  KN T ++E     +Y 
Sbjct: 122 KHQTKRLISG-FMFDFDNKEVWIDDRKLPLTKNEYKIVECLAQHKNRTFSREQIYEEVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +     I  FI  +RKK      G + I+TVWG GY
Sbjct: 181 LDGDALYSTITEFIRTIRKKCKEH--GADPIKTVWGVGY 217


>gi|329114976|ref|ZP_08243731.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
 gi|326695419|gb|EGE47105.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
          Length = 249

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+++ L++E FNV     GE  ++    Y  D  +LD+ +  + G E+
Sbjct: 21  IALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALQGLTAYPVDLAVLDIKMPRMDGMEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR  + + PV  LS  +   D++ GL+ GADDYI+KPF++  L+ RIRA++RR   S
Sbjct: 81  LQRLRT-RSNLPVIFLSSKNEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNEVS 139

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  A        +V G+LS++        +G  + LT  E+ +++ L+ R     +++  
Sbjct: 140 RAEANGEPTGGALVRGNLSLDELRHKCTWKGEDVPLTVTEFLLVKTLAQRPGLVKSRDQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  Y      + + ID  I ++RKK        N IET++G GY  RE+
Sbjct: 200 IDAAYGDTVYVDDRTIDSHIKRVRKKFRQVDDEFNQIETLYGIGYRYRED 249


>gi|213963214|ref|ZP_03391471.1| two-component system response regulator [Capnocytophaga sputigena
           Capno]
 gi|213954076|gb|EEB65401.1| two-component system response regulator [Capnocytophaga sputigena
           Capno]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K L  ++   L+ E+F V        G+     Y++D I+LD+ L +  G 
Sbjct: 1   MKILIIEDEKELRLTLRQFLEQEHFLVETAKDYTSGLSKLADYDYDCILLDIMLPNGSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+  K +  V I+S   S+EDKV GL+ GADDY++KPF+  EL+AR+++I+RR  
Sbjct: 61  QLLDELKAMKKNHSVLIISAKDSVEDKVLGLEKGADDYLAKPFHLAELLARVKSIIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ +  + +TV+V    + L  KEY ++    +R +  L ++M L     
Sbjct: 121 QQGEEVITLKNVRLFPETRTVKVGEETLSLNRKEYDLLYYFMIRPD-KLVEKMTLAEAVW 179

Query: 181 GRDEPEVKIIDVF---ICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    +V  +D     I  LRKKL  A    + ++ V+G GY L
Sbjct: 180 GDYIDQVDSLDFIYSQIKNLRKKLKTAEAEID-LQAVYGIGYKL 222


>gi|160933606|ref|ZP_02080994.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
 gi|156867483|gb|EDO60855.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/200 (32%), Positives = 115/200 (57%), Gaps = 5/200 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A +IE+ +    +   +   G   ++    +++D ++LD+ L  + GFEV
Sbjct: 15  ILIVEDDPNIARTIEVTISLVGYECRICGDGAAAVQEVLEHDYDLVLLDVMLPGMDGFEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           ++  ++    TPV  L+ +  + DKV+GL+ GA+DYI KPF   EL+ARI  ++RRS +G
Sbjct: 75  IQ--KIQSKGTPVIFLTALQDVTDKVKGLRLGAEDYIVKPFEAVELLARIEVVLRRSHKG 132

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  IV  D+++++D   V   G  + LT KE+ ++       +  +T+E  L  ++  
Sbjct: 133 RVQ--IVYDDITIDMDRHLVTKAGEPVALTPKEFSLLAFFMENVDVAVTRERLLAAVWGY 190

Query: 182 RDEPEVKIIDVFICKLRKKL 201
             + E + +D+ + +LRKKL
Sbjct: 191 EFQGESRTVDIHVQQLRKKL 210


>gi|73748148|ref|YP_307387.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|147668775|ref|YP_001213593.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|73659864|emb|CAI82471.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|146269723|gb|ABQ16715.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++L IEDDK +  SI L+ KS   +       LG+ GIE     +FD  I+DLGL DI 
Sbjct: 1   MKLLFIEDDKKIVESIFLLFKSFWPDMETKAVHLGKTGIETAYKEDFDIAIIDLGLPDID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VL+ +R A  S P+ IL+  ++ ++     + GADDYI+KPF   EL+AR++++++R
Sbjct: 61  GINVLKQIR-AFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKR 119

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +Q L V  G        K +     R++LT  E Q++ +L  +  +T++       
Sbjct: 120 LSRASQDLGVKYGHWKFGTSLKEISYNNIRVNLTVTEGQLLHILLTKAGSTVSYADISKS 179

Query: 178 LYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ GR+E   K  I   I ++R+KLS     K +I  + G GY + E
Sbjct: 180 IW-GRNEYYAKETIKTHIMRIRQKLSRIDNSKEFIINIPGVGYQIVE 225


>gi|190572473|ref|YP_001970318.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010395|emb|CAQ44003.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 120/217 (55%), Gaps = 4/217 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+D+  +   +++ L+++ + V     G++G++L    + D +ILD+GL D+ G EVL 
Sbjct: 1   MIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHEVLE 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRGHA 123
            LR      PV +L+  +   +KVR L +GA+DY++KPF  +EL+AR+RA++R RS    
Sbjct: 61  QLRQWS-QVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRTRSVPSD 119

Query: 124 QSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  V   G L V+L  + V + G  + LT KEY ++ LL       +T+   L  ++  
Sbjct: 120 GTPPVFDDGHLHVDLVRREVALDGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGP 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
             + +   + + + KLR KL ++A    Y+ T  G G
Sbjct: 180 THQHDTHYLRILVGKLRHKLGDSALDSRYLFTEPGVG 216


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           R+L++EDD  +  +I   L SE F V     G   +E  K        D ++LDL L  +
Sbjct: 13  RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V R +R    STP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++R
Sbjct: 73  SGLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLR 132

Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RS  +    A+ ++   ++++  +   V   G  ++L+ KEY+++E+         +++ 
Sbjct: 133 RSARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDK 192

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      + K +DV I  LR+KL        YI TV G GY
Sbjct: 193 LLERVWGIDFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGY 238


>gi|121586615|ref|ZP_01676400.1| transcriptional regulator CpxR [Vibrio cholerae 2740-80]
 gi|121549174|gb|EAX59207.1| transcriptional regulator CpxR [Vibrio cholerae 2740-80]
          Length = 223

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 115/221 (52%), Gaps = 6/221 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +I+DD  L   +  +L+ E F +   + GE G+      E D I+LD+ +  + G E L+
Sbjct: 1   MIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVS-DEIDLILLDVMMPKLNGMETLK 59

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--- 121
            LR  K +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++    
Sbjct: 60  RLR-EKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNGLT 118

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   D+ V    +    QG  + LT  E+ ++         TLTKEM    +  
Sbjct: 119 PKNSDVIECQDIQVYPGKQEAYCQGQLLELTTTEFALLTHFVQSPGATLTKEMLSIEVLG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  + ID+ +  LRKKL     GK  I+T+ GRGY++
Sbjct: 179 KHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGYLM 219


>gi|110613524|gb|ABG78576.1| membrane sensor protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A]
          Length = 205

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 112/209 (53%), Gaps = 7/209 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIPGFEVLRALRVAK 70
           H +++ L+     V   D  ED  E   +   +  D  I+DLGL D  G  ++R  R + 
Sbjct: 1   HHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSSD 57

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTG 130
           +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++RR+ G A  +I   
Sbjct: 58  VSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIP 117

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
              V+L  + + V    I LT  EY ++E L       ++K+  +  LY   +  E   I
Sbjct: 118 PFQVDLSRRELSVNEQVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTI 177

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DV + +LRKK+  A    + I TV G+GY
Sbjct: 178 DVLMGRLRKKI-QAQYPHDVITTVRGQGY 205


>gi|75907851|ref|YP_322147.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701576|gb|ABA21252.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 613

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 1/232 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   A  +  +L +E + V +   G++G+ L     FD I+LDL +  + G 
Sbjct: 1   MKILLVEDDVITATLLREVLTAEYYTVELATDGQNGLTLATLSNFDLILLDLLIPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   I  P+ +L+      D V+GL +GADDY++KP++  EL+ARIRA++RR +
Sbjct: 61  NLCRQLRAQGIQKPILLLTAKDQSADVVKGLDAGADDYVTKPYDISELLARIRALLRRGK 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +L+   +L VN+ +  V  +G  I L+ KEY ++ L         ++   ++ L+
Sbjct: 121 TELIPNLLSWENLDVNVISAEVTYKGQPISLSPKEYSLLGLFLRNPQRIFSRSEIIDRLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                P    +   I  LR+KL         +ETV+G GY L+   + +  E
Sbjct: 181 SIDATPSEGAVTNLIKDLRQKLKMVGMSAELLETVYGLGYRLKMPPQTQDGE 232



 Score = 42.0 bits (97), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++I+DD  +   +  +LK     V      +   E       D +++DL +    G +
Sbjct: 486 KVMVIDDDPVMLDILSNLLKPWGLAVKTLQNPQKFWETLITTTPDLLMIDLEMPTYSGID 545

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R      + P+ +++  + I+   +   +GADD+I KP    EL+ R+   + RS
Sbjct: 546 LCRVVRQDSHWGNVPILVVTVHTDIKSIQQVFAAGADDFIGKPVVGPELITRVINRINRS 605

Query: 120 R 120
           R
Sbjct: 606 R 606


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++N+ V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +   P+ +L+G+ + E++++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIIR-GQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   +L +N  A    V G ++ LT KE+++I  L   +   L++   LN +
Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +V++ID  I  LRKKL        YI+TV G GY
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLCIP-----YIKTVKGIGY 217


>gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
 gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++DD  + +  +  L  E F +     G + ++L    E D IILD+ L D+ GFEV
Sbjct: 6   ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+  LSG     D++ G + G DDYI+KPF+   LVA++++ +RR +  
Sbjct: 66  CRIIRT-KTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKEL 124

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + S         ++ G+L+++ D   V  +G  I L  KE+Q++  L+       + E  
Sbjct: 125 SGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + ++      +++ + V I  LRKK+        YI TV G GY
Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGY 229


>gi|116669432|ref|YP_830365.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609541|gb|ABK02265.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 250

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 121/242 (50%), Gaps = 28/242 (11%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+IEDD  +   + ++L    F+V V   G  G+   K      I LDLGL DI GFEV 
Sbjct: 8   LVIEDDHDIRELVRVVLVQAGFDVQVASSGAAGVVAAKELNPAVITLDLGLPDIDGFEVA 67

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R +R    +  + +L+  +   D + GL+SGADDY++KPF   EL AR+ A++RR R   
Sbjct: 68  RQIREFSDAY-IVMLTARAEELDTLIGLESGADDYLTKPFRPRELRARVAAMMRRPRSTS 126

Query: 121 -----GHAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                G A ++  TG       L  + +A+TV V G  +HLT  E+ ++  L        
Sbjct: 127 DSSAAGKAPAVADTGRTLTHNGLEFSYEARTVSVDGRELHLTRTEFDLLHALLEAGRMVR 186

Query: 170 TKEMFLNHLYDGRDEP----------EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           TK   +  L   RDEP          + + ++V +  LRKKL ++     +++TV G GY
Sbjct: 187 TKSELVRRL---RDEPYDVGGYISEADERSVEVHMGNLRKKLGDSPQNPRWLQTVRGVGY 243

Query: 220 VL 221
            L
Sbjct: 244 RL 245


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 10/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E F V     G   IE+C+  +FD II+D+ + ++ GF 
Sbjct: 3   RILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K  TP+ +LS      DK+ G + G+DDY+ KPF+ +EL+ R+ A+++RS+G
Sbjct: 63  ACREIRKFK-KTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 V  D      LSV+  A+ V + G RI +T KEY++   +   K   LT+E  +
Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + + +D  I  LRK L   +     I T+ G GY
Sbjct: 182 SEVWGYDFFGDERTLDTHIKLLRKSLGEYS---RCIVTLRGVGY 222


>gi|157267313|gb|ABV26370.1| RppA [Proteus mirabilis]
          Length = 221

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  L  ++   L+   F      L  D         FD ++LDLGL D  G 
Sbjct: 1   MNILLVEDDLQLGKALCRGLEIAGFQPCWVRLLTDARVQLNQKAFDLMLLDLGLPDGDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L ALR +    P+ IL+  + I++ V+ L SGADD++ KPF   EL++R++A+ RR  
Sbjct: 61  DELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRMA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +   GDL +N     V + G  + L+GKEYQ++  L    +  + K      L+ 
Sbjct: 121 GFSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+ E   ++V +  LR+K+     GK  I TV G GY+L++
Sbjct: 181 LDDKIESNSLEVHMHNLRRKI-----GKERIITVRGIGYLLKK 218


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     GE+ +E       D ++LD+ +  + G+ V
Sbjct: 14  ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDGYGV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR  + 
Sbjct: 74  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 132

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H         +I   DL ++ + + V   G RI LTG E+ ++ELL  R     ++   L
Sbjct: 133 HGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEIL 192

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 193 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 241


>gi|78065965|ref|YP_368734.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966710|gb|ABB08090.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 241

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L    F V V   G+  +   + ++   +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDGYEFAVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-------EELVARIRA 114
           V R +R A  + PV IL+    + D+V GL++GADDY++KP            L+ R + 
Sbjct: 69  VCRRIR-AFTNVPVLILTARLDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            V  +       +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AVAEAPVATPEALVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K ++ D IILD+ +  + G + 
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  ELVARI++ +RR +  
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + QS+     I   +L +N+ +  V V G  I LT +E+ ++  L++ +   L+ +    
Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++         + V I KLR+K+        YI+TVWG GY
Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGY 227


>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + V     G + IE L         +LD+ L D  G 
Sbjct: 3   KILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +  V +L+  S  +DK+ G QSGADDYI KPF+ +EL+ R++A++RR +
Sbjct: 63  EICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALIRRVK 122

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + S    +I T    ++ + + +      + LT  E+ +++ L    + +L+++  L 
Sbjct: 123 KDSDSKKNNMINTPPFLLDPNKRKLYKNEVEVDLTPTEFSIVKYLMTNDSQSLSRDQILE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++   D  + KI+DV I ++R K+ +      +I+TVWG GY  R +
Sbjct: 183 EVWGSADLYDYKIVDVNIRRIRNKIEDDPSKPKFIQTVWGYGYSFRRD 230


>gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 246

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQAAR-PVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 241


>gi|134101321|ref|YP_001106982.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008141|ref|ZP_06566114.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913944|emb|CAM04057.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED   +  ++   L++    V +   G    E+ + +  D ++LDL L    GF 
Sbjct: 4   RVLVVEDSAPIREAVAAGLRTAGHTVELRPDGRGVEEVVRTFRPDVVVLDLMLPGRDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +     V IL+   S+ D++RGL+SGADDY+ KPF+  ELVAR+ A++RR  G
Sbjct: 64  VLETLR-SGADLGVVILTARDSVPDRLRGLRSGADDYVVKPFDTAELVARVEAVLRRM-G 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +   DL ++ DA      G  + LT  E++++  L  ++   ++K      ++  
Sbjct: 122 RVAATVEVDDLVIDQDAGVAVRAGSVLALTATEWRLLCYLVAQRGRVVSKLQIFTGVWGY 181

Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + ++ +++V +  LR+KL     G+  + TV GRGY LR
Sbjct: 182 QSLDVDLNLVEVHVSALRRKLEQH--GRRLVHTVRGRGYALR 221


>gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 125/222 (56%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +E +L +  ++V     G +G    + Y++D ++LDL L  + G  +
Sbjct: 6   ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLEQYQYDLVLLDLMLPGVTGEAL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R +  + P+ I+S  +S+ D++  L+ GADD+I KPF+  E++AR+ A +RR+   
Sbjct: 66  VAQIRRSS-TVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAVAF 124

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +++     ++ +GDL ++ D+  V ++   + LT +E++++ LL        T+E     
Sbjct: 125 SEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFTQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++     E   ++V I  +R KL+      +YI+TVWG G+
Sbjct: 185 VWEDAFLGEDNTVNVHISNIRSKLAKIDPDTSYIKTVWGIGF 226


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ LK+E + V     G + ++L +  + D IILD+ +  + G + 
Sbjct: 6   ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGIDA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + +TP+ +LS      DK+ GL  GADDY++KPFN  EL+AR++A +RR    
Sbjct: 66  CIKIR-EQYNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTKL 124

Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  H  S ++  D L++NL+   V   G  I+LT  E  +++LL + K      E     
Sbjct: 125 NTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I KLR+K+       +YI TVWG GY   E
Sbjct: 185 VWGQEYFDNNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKFGE 230


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L LK + + V     GE+G+EL     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           + +  R     TP+ I +   ++ DKV  L  GA+DYI KPF  EEL+ARIR + R R  
Sbjct: 72  LCQEFR-KLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRET 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +    ++ ++L  K V +    I LT  E+ ++E     +  + ++E  L  ++ 
Sbjct: 131 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKMDTES---KYIHTIRGFGYIFQ 229


>gi|283833495|ref|ZP_06353236.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC
           29220]
 gi|291071158|gb|EFE09267.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC
           29220]
          Length = 206

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRHHLKVQLQDLGHQV---DDAEDAKEADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R   +S P+ +L+     +DKV  L +GADDY++KPF+ EE+ AR++A++R
Sbjct: 58  DGLSLIRRWRSNDVSLPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQIISLPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNA 204
           LY   +  E   IDV + +LRKK   A
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKNPGA 204


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  I L L+++ + V+    GE+ +   +  + D  +LD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R  K + PV +L+      DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  EILKRIR-EKYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +     + GD+       +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 175 LNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++ +   +     + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FRKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 229


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 8/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DDK +   ++   + E F VY    G +G+ L +    D  +LD+ L  + GFE
Sbjct: 4   RIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           + R LR  + + P+ +L+      DK+ GL+ GADDY+ KPF+  E+VAR++AI+RRS +
Sbjct: 64  ICRKLR-KEGNIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G      +I  G L+++     V++    + LT  E++++ LL+       ++   + H+
Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E   + +D  +  LR+KL +A     YI+TV+G GY
Sbjct: 183 QGYSFEGYERTVDAHVKNLRRKLGDA----QYIQTVYGIGY 219


>gi|83717997|ref|YP_439386.1| response regulator [Burkholderia thailandensis E264]
 gi|257142507|ref|ZP_05590769.1| response regulator [Burkholderia thailandensis E264]
 gi|83651822|gb|ABC35886.1| response regulator [Burkholderia thailandensis E264]
          Length = 229

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  +A ++   L+S  + V     G  G++L     +DAI+LDL L  + G 
Sbjct: 1   MRVLVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSLPGMDGL 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR   +  TPV +L+   +++DK+ G   GADDY+ KPF+ +E+ AR+ A+++R 
Sbjct: 61  TLCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRY 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG   Q+ +   D+ ++L   TVE  G  + +  K   ++ +L    N  +        +
Sbjct: 121 RGQVTQAALCRADVRLDLQTLTVERAGRAVKMPPKCLHLLRILMQTPNRVIGHAELEAEI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G   P+   +   +  LR+ L+ A G  + IETV G GY L
Sbjct: 181 W-GDALPDSDTLRAHVYTLRRALT-AQGEPDLIETVHGLGYRL 221


>gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDSASFGSLVIDRAAMTVTKNGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|288916412|ref|ZP_06410790.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288352183|gb|EFC86382.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 218

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  LA ++   L+ E F V V   GE  ++     +++ ++LD  L  +PG 
Sbjct: 1   MRVLLVEDDAPLADAVARGLRRERFAVDVVHDGEGALDRLGVVDYEIVVLDRNLPGLPGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +   +    + +L+    + ++V GL  GADDY+ KPF+  ELVARIRA+ RR+ 
Sbjct: 61  AVCERIVGERRPARILMLTASDDVSERVEGLMLGADDYLPKPFDMRELVARIRALGRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   D++++   +T       + LT +E+ ++E L L     L+ E  +  ++D
Sbjct: 121 RAAPPVLRWRDITLDSARRTALRADRDLRLTNREFALLETLMLADGAVLSAEQLMESVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +     + V +  LR+KL    G    I T+   GY L
Sbjct: 181 DRLDAFSNAVRVTVLTLRRKL----GDPPVIMTIPAAGYRL 217


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IEDD  +   ++L L+ E + V +   GE G+     ++ D I+LD+ L  I G+
Sbjct: 5   INVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPKIDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  + + PV +++G     DK++GL+ GADDY+ KPF+ +E++AR++A++RR+ 
Sbjct: 65  EVCREIRKDR-NVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTN 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  + + + G L +N+   T+  +   I L  KE +++  L   KN   T++  L+ 
Sbjct: 124 PYFGTNEEIALFG-LKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E + + IDV I ++R+K+   +G  + ++T+ G GY    N
Sbjct: 183 VWGYDYEGDPRTIDVHIKRIREKIGEGSGEWS-LKTIRGVGYKFEVN 228


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   IE+ LK + F V+    G + +++    +    ILD+ +  + G EV
Sbjct: 6   ILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  + + PV  LS  ++  DKV GL +GADDYI+KPF+  ELVAR++A +RR    
Sbjct: 66  CRRIR-EQYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTYF 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  H   + + G L ++  ++ V + G  I+LT  EY ++ L++  +N   T E  
Sbjct: 125 NQVPSEVHKNKIQIRG-LEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  R       + V I +LR K+         I+ VWG GY
Sbjct: 184 YESIWRERAHESNNTVMVHIARLRNKIEEDPKKSTIIQNVWGVGY 228


>gi|212638130|ref|YP_002314650.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559610|gb|ACJ32665.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL EDD  L   I  +LK +   +V     GED  +      +D IILD  L +  G
Sbjct: 4   MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR       + +L+   +++D+V GL++GADDY+ KPF  +EL+AR++A+ RR+
Sbjct: 64  VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q  IV  G   VN  + T+   G +I LT +E+Q+++LL   +   LT+++ L+ +
Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  +K ID  +  LRKK+ +    +  I+TV G GY +
Sbjct: 184 WGYDADVSMKTIDATVKLLRKKIGDEQ--QQLIKTVRGVGYTI 224


>gi|328469306|gb|EGF40252.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 243

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +   V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHQVSRESSVAAGRNAYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQQQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKNVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGY 237


>gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 239

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  I+ ML+   +        +D  E+    + D I+LD+ L D  GF  
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPDGTGFSF 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR      P+   S  +S +DKV GL  G DDYI+KP++ +EL++RIR+I+RR+ G 
Sbjct: 71  CKELRHTS-QVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGV 129

Query: 122 ---HAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               ++ L +  D   + +N  A+TV      + +  KE+ ++  ++  +   LTKE  +
Sbjct: 130 DDNKSEMLTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIM 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++    + E   + V +  LR+KL         I TVWG GYVL
Sbjct: 190 SAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|300768408|ref|ZP_07078309.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494023|gb|EFK29190.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 242

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 131/244 (53%), Gaps = 21/244 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+K+++  + +  K E ++ +    G + +E+  F E    +D + LDL L  
Sbjct: 1   MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEM--FNEDVDGWDMVTLDLNLPG 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G +V   +R A  + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  KDGMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRS-------RGHAQSLIVTGDLSVN---LDAKTVE--VQGHRIH-LTGKEYQMIELLSL 163
           RR+            S + + D+  +   L+ KT E  +   +I  LT KE+ +++ L+ 
Sbjct: 119 RRADLAKTTLADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIRDLTPKEFDLLKTLAQ 178

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++D     + + +D  I KLR+K+  A  G   I+TVWG GY   +
Sbjct: 179 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDD 236

Query: 224 NAKD 227
           +  D
Sbjct: 237 SGVD 240


>gi|50954148|ref|YP_061436.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950630|gb|AAT88331.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 271

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L  E++ V     G+  ++  + +  D ++LD+ L DI G 
Sbjct: 45  IRVLVVDDEHTLTDLLAMALHYEDWEVKTASNGQQALQFSREFRPDVVVLDIMLPDIDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R      PV  L+   +++D++ GL +G DDY++KPF+ EELVAR+R ++RRSR
Sbjct: 105 QVLSRMRADGNEAPVLFLTAKDALDDRIAGLTAGGDDYVTKPFSLEELVARLRGLLRRSR 164

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++V GDL ++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 165 AAVADQDDPVLVVGDLVLDEDSYEVHRDGEPIQLTATEFELLRFLMRNPRRVLSKAQILD 224

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++         +++++I  LRKK+   AG    I TV G GY+++
Sbjct: 225 RVWSYDFGGSSSVVELYISYLRKKID--AGRTPMIHTVRGAGYMVK 268


>gi|15598400|ref|NP_251894.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102734|ref|ZP_01366652.1| hypothetical protein PaerPA_01003801 [Pseudomonas aeruginosa PACS2]
 gi|116051194|ref|YP_789975.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890603|ref|YP_002439467.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254236166|ref|ZP_04929489.1| hypothetical protein PACG_02131 [Pseudomonas aeruginosa C3719]
 gi|254241892|ref|ZP_04935214.1| hypothetical protein PA2G_02613 [Pseudomonas aeruginosa 2192]
 gi|296388309|ref|ZP_06877784.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313108521|ref|ZP_07794522.1| putative transcriptional regulator in 2-component system
           [Pseudomonas aeruginosa 39016]
 gi|9949324|gb|AAG06592.1|AE004744_7 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115586415|gb|ABJ12430.1| putative transcriptional regulator in 2-component system
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126168097|gb|EAZ53608.1| hypothetical protein PACG_02131 [Pseudomonas aeruginosa C3719]
 gi|126195270|gb|EAZ59333.1| hypothetical protein PA2G_02613 [Pseudomonas aeruginosa 2192]
 gi|218770826|emb|CAW26591.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310881024|gb|EFQ39618.1| putative transcriptional regulator in 2-component system
           [Pseudomonas aeruginosa 39016]
          Length = 225

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 15/225 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD+ L   +   L  E F+V  +  G            DA++LD+ L D  G E+
Sbjct: 4   LLLIDDDRELCELLGTWLVQEGFSVRASHDGAQARRALAEQTPDAVVLDVMLPDGSGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L+ LR      PV +LS      D++ GL+ GADDY++KP +  EL AR+RA++RR+   
Sbjct: 64  LKQLRGDHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRTHPA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN----- 176
              + +  GDLS+NL     ++ G  I LT  E +++E L  +    L K+         
Sbjct: 124 QPSAQMQLGDLSLNLTRGVAQIDGQEISLTLSESRILEALLRQPGEPLDKQALAQLALGR 183

Query: 177 --HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              LYD       + +D+ +  LRKKL +   G   I  + GRGY
Sbjct: 184 KLTLYD-------RSLDMHVSNLRKKLGSHPDGSPRILALRGRGY 221


>gi|326789239|ref|YP_004307060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540003|gb|ADZ81862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 9/219 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   +   L       Y    G + +EL K    D +ILD+ L  + GF V
Sbjct: 4   ILVVEDEIAINELVRRNLGLVGHTCYSAMNGLEALELIKSKNVDLVILDIMLPKLDGFGV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++     TP  +L+  S++ED+V+GL  GADDYI KPF   EL+AR+ A++RR+R  
Sbjct: 64  LEQMK----DTPTILLTAKSNVEDRVKGLVMGADDYIIKPFEMLELLARVEAVLRRTRKE 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +    ++ V   ++ + ++G  +  T KEY+++E+L   +N  L++E  L  ++   
Sbjct: 120 -EDVFEVKEVKVEFGSRKIYLRGKLVDCTPKEYELLEVLIKNRNVALSREKLLEMIWGYD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +DV I +LRKKL      +  I TV+  GY L
Sbjct: 179 YMGETRTVDVHIQRLRKKLEL----EGQIATVYKLGYRL 213


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++   + L L+     V     GE+G+ L   +  + ++LDL L  I G +
Sbjct: 3   RVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGINGVQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      D V GL++GADDYI KP   E + ARI+A++RR +G
Sbjct: 63  VCRRIRETS-QVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKG 121

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 V   G+L+++    TV   G R+ L   E +++  LS       +++  L +++
Sbjct: 122 PGGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     + +++D  + +LR K+ +  G   YI+TV G GY
Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGY 221


>gi|254522399|ref|ZP_05134454.1| two-component response regulator [Stenotrophomonas sp. SKA14]
 gi|219719990|gb|EED38515.1| two-component response regulator [Stenotrophomonas sp. SKA14]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  LA +++  L+ E + V + +      E   +   D ++LD  L D  G 
Sbjct: 1   MHILLIEDEAELAATLKSALQRERYVVDLANTLALAREAALYGSHDLVLLDRTLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      P+ +LS +  + D++ GL  GADDY++KPF  EEL ARIRA  RR  
Sbjct: 61  GLIPVLRGHNPGVPIIVLSALGQLPDRIAGLDEGADDYLAKPFALEELFARIRAAGRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L  +  +    V G R+ L  +E +++  L+ R   T+ +E     +Y 
Sbjct: 121 GMQVEPVSIGRLLFDPASGEATVGGQRLELPRREIRVLAALARRLGRTVLRESIEMAVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D      +D  + +LR+KL++A  G   I  + G GY++RE 
Sbjct: 181 FDDGIHSNTLDSHVSRLRRKLADADAGVE-IHAIRGVGYLMRET 223


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+++DD+A+  S+    +S  ++ Y  D   DG+E          DA+I+D+ +  +
Sbjct: 3   MHILVVDDDRAVRESLA---RSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E  R LR      P+ +L+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ R
Sbjct: 60  DGLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTR 119

Query: 118 RSR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RSR       A   +   DL+++   + +     RI LT  E+ ++ +        L + 
Sbjct: 120 RSRPEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERW 179

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE
Sbjct: 180 WLLHEVW-GFDFPTTANSLEVYIGYLRRK-TEHDGEPRLIHTVRGVGYVLRE 229


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N++V     GE GIE+     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V + LR     TP+ I++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R +  
Sbjct: 72  VCQELRKLA-ETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +   +  ++ +++ AK V +    + LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKIDPKS---YYIHTIRGFGYIFQ 229


>gi|88800403|ref|ZP_01115968.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
 gi|88776850|gb|EAR08060.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain [Reinekea
           sp. MED297]
          Length = 224

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 119/217 (54%), Gaps = 2/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED++ LA      LK+  + V + D G+   +  + +E D ++LDL L  + G E+
Sbjct: 4   IVIVEDERQLAELERDYLKAAGYEVTLFDRGDTAQQWLETHEPDLLVLDLMLPGLDGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + P+ + +      D++ GL+ GADDY+ KPF+  ELVAR++ I+RR+   
Sbjct: 64  CRNLR-RRSTVPIIMTTARVEEVDRLIGLEIGADDYLCKPFSLRELVARVKVILRRTHPE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +    + +N     VE+  H + LT  E +++ LL        +++  ++H+Y+ R
Sbjct: 123 AAPPVSLNPI-LNEALAMVELGSHSVELTQVEVRLLALLQNHPRRIFSRDQIIDHIYEDR 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + +D  I KLR+KL   +   ++I +V+G GY
Sbjct: 182 RIVSDRTVDSHIKKLRRKLQQLSEDHDFIHSVYGAGY 218


>gi|325571287|ref|ZP_08146787.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325155763|gb|EGC67959.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G+E    +  ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEAVFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 120

Query: 119 SR---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           S            A   IVT    +N   +   + G  I  LT KE+ ++  L+ +    
Sbjct: 121 SELVEKTTPEASDATFDIVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 181 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGY 229


>gi|299133242|ref|ZP_07026437.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298593379|gb|EFI53579.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 219

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR LLIEDDK +  +I+  L+   + V +V D+ E  +   +   +   +LDLGL  I G
Sbjct: 1   MRTLLIEDDKMIGEAIKQALQDVAYAVDWVRDV-ETALLAVRSERYAIALLDLGLPVIDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + LR LR  +I+ PV +++   ++E +++GL  GADDY++KPF   EL+AR+RA++RR 
Sbjct: 60  RQFLRDLRSRQIALPVIVVTAQDNVESRIQGLDLGADDYMTKPFEMRELLARMRAVLRRE 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +  G L ++         G    LT +E+ ++  L +R    +++      +Y
Sbjct: 120 GSGATSQLSNGTLHLDPATHEATYNGKTASLTSREFSLLYALLVRPGVIVSRSDLEKEIY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E E   I+ FI  +R+K        + I  V G G+++
Sbjct: 180 GWNEEVESNAIEFFIHSVRRKFD-----ASIIRNVRGIGWMV 216


>gi|167569384|ref|ZP_02362258.1| DNA-binding response regulator KdpE [Burkholderia oklahomensis
           C6786]
          Length = 234

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 10  VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 70  IRELR-GWSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 128

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+S +V  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 129 GAAESPLVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 189 GPTHVESHHYLRIYMAHLRQKLEVDPAQPQHIVTETGVGYRL 230


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  +Y ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
 gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
          Length = 230

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   ++ +L+ E F+V   + G+ G+E       D I+LD+ +  + G E
Sbjct: 3   KILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKVD-NSIDLILLDVMMPVMNGTE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR A  STPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRA++RR++ 
Sbjct: 62  MLRRLREAH-STPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRRTQA 120

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +       L+   D+++    + V  Q   I +TG E  ++     R    ++KE   
Sbjct: 121 SNEKATEKSDLLTYQDITIYPGRQEVVCQEIPIEMTGTELSLLSYFIQRPGQIISKESLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +   R     + ID+ +  +RKKL     GK  I+T+ G+GY+L E A
Sbjct: 181 LDVLGKRLARFDRAIDMHVSNIRKKLPERLDGKPRIKTLRGKGYLLVEEA 230


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I L L +E   +   D G   +   +    D ++LD+ +  + G++ 
Sbjct: 9   VLVVDDEPRMRELIRLYLAAECTVLEAGD-GLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  + + PV +L+    + D+V+GL+ GADDYI+KPF+  EL AR++A++RRS G 
Sbjct: 68  LQRIR-EESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I  G L++    +T    G  + LT KE+ ++ LL+       ++E  L+ ++ 
Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + + +D  I  LR KL   AG    I TVWG GY   E
Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT-----T 168
                     +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+           
Sbjct: 123 TLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVEN 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++++ +  Y+G +      + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGN-----TVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+++   +   L++ENF V           + +      +ILD+ + +  GFE+
Sbjct: 23  VLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIMMPEQNGFEL 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R AK + P+  LS  S   DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 83  CRRIR-AKSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q    ++  G + +NL  + V V+  ++ LT KEY+++ L +       + E  L   +
Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  +     I V + +LR+K+ +      Y+  VWG GY
Sbjct: 202 DGVGDKHT--IRVHLSRLREKIESDPNHPQYLVNVWGVGY 239


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              ++     +I T   ++N   + V + G  + +LT KE+ ++  L   +    ++E  
Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|303242550|ref|ZP_07329028.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302589912|gb|EFL59682.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 220

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 121/217 (55%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  +   L++E++ V V + GE  ++L + Y    ++LD+ L  + GF V
Sbjct: 4   ILIVEDNKEIAGLLCDFLRAESYTVSVCENGEKALQLYEKYGARLVVLDIMLPGMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    +TP+ I+S  S   DK+ GL  GADDYI KP++ + L+A+I  I +R   +
Sbjct: 64  CSKIRKTS-NTPIIIVSAKSEKYDKLNGLILGADDYIEKPYDIDILLAKISGIFKRR--Y 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   ++ G+L +N   K   +    + +T KE++++ LL   K  TL KE   N ++   
Sbjct: 121 ALDEVIEGNLRLNRAEKAAYLDDVPLEMTAKEFELLLLLVENKGKTLKKEYIFNQIWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E + + V I  LR+K+ +      +I+TVWG GY
Sbjct: 181 SFSEQQTLTVHIKWLRQKIEHNPKEPQHIQTVWGVGY 217


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ ++   +E  L+   + V  TD G+  +   +      ++LD+ L D+ GFE
Sbjct: 13  RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+  L+  +  +D+++GL  G DDY+SKPF+ EE++ RI AI+RR+  
Sbjct: 73  VTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTAP 132

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S++   DL ++  A  V   G  I L+  E++++  L       ++K   L+
Sbjct: 133 VDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQILD 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           H++      + +II+ ++  LR+K+         I+TV G GY LR
Sbjct: 193 HVWSYDFAGDARIIETYVRYLRRKIDCFE--PPLIQTVRGVGYCLR 236


>gi|238751695|ref|ZP_04613184.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
           43380]
 gi|238710105|gb|EEQ02334.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
           43380]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L+H ++  L    F V V + G     L +   +  ++LD+ L  + G 
Sbjct: 1   MRLLLVEDHPELSHWLQKALTHAGFAVDVINDGLAADHLLQNENYALVVLDVALPRLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR    + PV +L+  + + D+V+GL  GADDY++KPF  +EL ARIRA++RRS 
Sbjct: 61  DLLARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSI 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GDL+ + D     +    + LT +E  ++  L  R+   + K+     ++ 
Sbjct: 121 GETGQAVEFGDLTYH-DEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQVFT 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+   + I++++ ++RKKL    G    I+T+ G GY L
Sbjct: 180 LSDDANPESIELYVHRVRKKLQ---GSNVSIQTLRGLGYSL 217


>gi|167577808|ref|ZP_02370682.1| response regulator [Burkholderia thailandensis TXDOH]
 gi|167615936|ref|ZP_02384571.1| response regulator [Burkholderia thailandensis Bt4]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  +A ++   L+S  + V     G  G++L     +DAI+LDL L  + G 
Sbjct: 1   MRVLVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSLPGMDGL 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR   +  TPV +L+   +++DK+ G   GADDY+ KPF+ +E+ AR+ A+++R 
Sbjct: 61  TLCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRY 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG   Q+ +   D+ ++L   TVE  G  + +  K   ++ +L    N  +        +
Sbjct: 121 RGQVTQAALCRADVRLDLQTLTVERAGRPVKMPPKCLHLLRILMQTPNRVIGHAELEAEI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G   P+   +   +  LR+ L+ A G  + IETV G GY L
Sbjct: 181 W-GDALPDSDTLRAHVYTLRRALT-AQGEPDLIETVHGLGYRL 221


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ +E       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR   
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + ++  G L V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|66769829|ref|YP_244591.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188993044|ref|YP_001905054.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris str. B100]
 gi|66575161|gb|AAY50571.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734804|emb|CAP53014.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 271

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   +++ L+++ + V      E+G+        + ++LD+GL D  G E
Sbjct: 45  RVLIIDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLATLAGQGAELVVLDIGLPDRDGHE 104

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIRA++R++  
Sbjct: 105 VLREIRQWS-SVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 163

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 164 GNTVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQLLREV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 224 WGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVG 263


>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +  +    ILD+ L  I G+E
Sbjct: 5   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ RIR+++RR   
Sbjct: 65  VCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRVNL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   +  I  G  ++++ AK+       I +T  E+ ++E     K   +T++  
Sbjct: 125 TNSQDKEKTRKTITDGPFTLDIYAKSFFKNDKEIDVTPTEFTILENFINNKGKAMTRDEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +      + KI+DV I ++R K+ +      YIETVWG GY
Sbjct: 185 MAMTWGNNYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGY 229


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|238923173|ref|YP_002936686.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238925077|ref|YP_002938594.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238874845|gb|ACR74552.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|238876753|gb|ACR76460.1| two component transcriptional regulator, winged helix family
           [Eubacterium rectale ATCC 33656]
 gi|291535286|emb|CBL08398.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD +L   +   LK   F+V V   + E    L +   +D +ILD+ L D  GF
Sbjct: 3   RILLLEDDVSLIDGLVYSLKKNEFDVEVARTVCEAKQYLSELDRYDLLILDVTLPDGTGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V   +R      P+  L+        +RGL SG DDYI+KPF   EL +RIRA++RR  
Sbjct: 63  DVCERVRKENQQIPIIFLTASDEEVSIIRGLDSGGDDYITKPFKLGELCSRIRALLRRAG 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S+    + +  GD++++L      ++G  + LT  EY+++ LL    N  +T+++ LN 
Sbjct: 123 VSKSEKNTSMECGDITIDLLGSRATLKGKALDLTSAEYRLLCLLVRNANRVVTRDIILNE 182

Query: 178 LYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+D      +   + V++ +LR+K+        ++ T+ G GY  +E
Sbjct: 183 LWDDTGNFVDDNTLSVYVRRLREKVETNPSHPEHLITIRGFGYQWKE 229


>gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 10/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ L  +  L+L+ + F V     G +G++  +   FD  ++D+ +  + G   
Sbjct: 10  VLLVEDDEMLRETTALVLERQGFTVSTASDGVEGLDALRRETFDVAVVDVMMPRMDGITF 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      P+ +L+      D++ G Q G DDY++KPF+ E L AR+RA++RR    
Sbjct: 70  ARKVREGS-DLPIVLLTARDLPHDQLAGFQVGVDDYVTKPFDGEVLAARLRAVLRRVDTV 128

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + I   DLSVN D   V+  G  I L+  E++++E+L   +   L++   L  +
Sbjct: 129 PEEPATATIRVADLSVNRDGMVVKRAGETISLSATEFRLLEVLLDHRGRVLSRHQLLEMV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D     +  +++V + +LR+K+     G   I TV G GY L
Sbjct: 189 WDIGSWGDTHVVEVTVQRLRRKI-----GAERIVTVRGAGYKL 226


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 24/244 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RILL+ED+  +A  +   L  E + V     G++     K++E  +D IILDL L  + G
Sbjct: 3   RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEA--FNKYFENDYDLIILDLMLPGLDG 60

Query: 60  FEVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117
            EV R +R  + +  PV +L+  S   +K+ GL+ GADDY++KPF+  EL+AR++A +R 
Sbjct: 61  LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120

Query: 118 ------------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159
                               R  ++ +   G LS+  +     ++   + LT KE++++ 
Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180

Query: 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++       LT+E  L  ++      + + +DV I  LR+K+S A G  + +ETV G GY
Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240

Query: 220 VLRE 223
            L+E
Sbjct: 241 RLKE 244


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 126/238 (52%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+  +   +   L    FNV   D GE+ +       FD I+LD+ L  I G 
Sbjct: 4   LHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGISGL 63

Query: 61  EVLRALRVAK----ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           EV +++R  +      +P+ +++     ED + GL+ GADDYI+KPF+ + LVAR++A+V
Sbjct: 64  EVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVV 123

Query: 117 RRSR---GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RR +    H+ S  I   +L ++     V  QG  I LT  E+ ++ LL+ +     T++
Sbjct: 124 RRGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQ 183

Query: 173 MFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++ +  YD    P  + IDV I  LRKKL  A      IETV G GY  ++  +++
Sbjct: 184 QIIDAVRGYDFLVTP--RAIDVQIFGLRKKLGAAG---QSIETVRGIGYKFKDPQEED 236


>gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ + + I   LK E +++     G++ +E      F+ +ILDL L  + G E
Sbjct: 5   KILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEKYN-NSFNLVILDLMLPYVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R    + PV ILS M    D++ GL  GADDY+ KPF+  ELVAR++A +RR   
Sbjct: 64  VLRQIRTVN-NAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYVY 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     SL+    L ++     V  +   ++LT  E+++++      +   TK    N+
Sbjct: 123 YNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFNN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 183 VWKNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKLGE 228


>gi|221211696|ref|ZP_03584675.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD1]
 gi|221169057|gb|EEE01525.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD1]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRQPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGTVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|221369256|ref|YP_002520352.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332560858|ref|ZP_08415176.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|221162308|gb|ACM03279.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332274656|gb|EGJ19972.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD+  A  +   L +E ++V +V D G D +       +D +++D  +  + G
Sbjct: 5   MKILLAEDDRQTADYLRQGLLAEGYSVDHVPD-GRDALVQATLQPYDLLVVDRMMPGLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ALR A+I  P+ IL+ M  + D+V GLQ+GADDY+ KPF   EL AR+ A+ RR 
Sbjct: 64  LSLVKALRSAQIKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRP 123

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+ L+  GDL+++   +TV   G  I L  +E++++E L        T+ M L  
Sbjct: 124 ALAEGARDLLRVGDLTLDTVRRTVSRGGTEIDLQPREFRLLEHLMRAAGRVQTRTMLLEA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P   +++  + +LR K+      K  + TV G GY+L+
Sbjct: 184 VWDFHFDPGTSVVETHMSRLRAKIDRPF-DKPLLHTVRGAGYMLK 227


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  +   +   L     +V     G  G+   +   +DA++LD+ +  + G E
Sbjct: 4   RVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R AK   P+ +L+      D+V GL+ GADDY++KPF+  EL+AR+RA++RR++ 
Sbjct: 64  VCKRIR-AKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQP 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A +  +    +S+++  + V+V G  + LTG E++++  L  R    + ++  L     
Sbjct: 123 TAVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEA-- 180

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           GR +  V  + +DV I  LR+KL +  G    I+TV G GYV 
Sbjct: 181 GRSDTVVGERTVDVHISHLRQKLGDEGG--RLIKTVRGVGYVF 221


>gi|150014934|ref|YP_001307188.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901399|gb|ABR32232.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  ++ +I    + E   +     G D +E    Y +D +ILDL L ++ G 
Sbjct: 2   IKVLLVEDNIEISQNIVEYFRDE-LEIKAVYNGSDAMECLSIYNYDIVILDLMLPEVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +    ++T V IL+    + DK++    GA+DY++KPF  EEL ARI +I+ +S 
Sbjct: 61  SVLSHISKNCLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARINSIL-KSM 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +  +L+   D+ +++  K V +  + + L  K Y+++E + + K   L KE   +++
Sbjct: 120 GKVKRANLLEFKDMKIDMKVKKVYIGTNELELNEKLYKLLEYMVINKGVLLFKEQIFDNV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                +   +II+V+I +LRK+L     GK Y+ T  G GY+L E+ +D
Sbjct: 180 CGYNSDAATEIIEVYISRLRKQLGTFGYGK-YLITKRGMGYLLDESIED 227


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G+DG++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGAIQKLNFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR    
Sbjct: 65  CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V + ++R K+     G+  I TVWG GY
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGY 226


>gi|209809014|ref|YP_002264552.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208010576|emb|CAQ80951.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+      ++  L    + V ++  G DG+     Y++D IILD+ L  + G+
Sbjct: 1   MKLLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVMLPKLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+ LR  + STP+ +L+    ++D+V+G + GA+DY+ KPF   EL ARI   +R   
Sbjct: 61  QILQTLRNCENSTPIIMLTAKDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQT 120

Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  H Q +  +V  DL ++L   T       I LT KE+ ++EL   ++   L++    +
Sbjct: 121 ANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFSLLELFMRKQGEVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   + +  +IDV + +LR K+         I TV G GY + E
Sbjct: 181 LIWDMNFDSDTNVIDVAVKRLRAKIDKPYDTP-LIHTVRGMGYKMDE 226


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 117/230 (50%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---------YEFDAIILDL 52
           RIL++ED+  +   I L L+ E + +   + G   + L +           EFD ++LDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR   +   + S+    D+++      V V    I L+ KEY+++EL         
Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGY 249


>gi|116255736|ref|YP_771569.1| putative two-component response regulator [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115260384|emb|CAK03488.1| putative two-component response regulator [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 127/226 (56%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+  +A ++   L   +  + +V+ L +  + +     +DA++LD  L D  G
Sbjct: 1   MRILLIEDEPQMAVALRGALTRHDMVMDHVSTLCDAELVIGD-GAYDAVLLDRQLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E++  +R   ++ P+ +++    + D++ GL++GADDY++KPF  +EL+AR+RA++RRS
Sbjct: 60  LELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVMRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI  G LS +     + V G R+ +  +E  ++E L  R    + +   +  ++
Sbjct: 120 ETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMVPRPALMEAVF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              DE +   +D  I +LR+KL+ +  G   I  + G GY+LRE +
Sbjct: 180 GFDDEIQSNALDSHISRLRRKLAASQAGV-VINVIRGVGYLLREAS 224


>gi|16762375|ref|NP_457992.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29143863|ref|NP_807205.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213052748|ref|ZP_03345626.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426105|ref|ZP_03358855.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581244|ref|ZP_03363070.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213620677|ref|ZP_03373460.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213648768|ref|ZP_03378821.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289807544|ref|ZP_06538173.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|289825991|ref|ZP_06545150.1| DNA-binding transcriptional regulator CpxR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300970|pir||AC0943 two-component response regulatory protein STY3812 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16504679|emb|CAD09565.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139499|gb|AAO71065.1| two-component response regulatory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   +  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGNELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+IED+K ++  ++L L+ E ++V   D+  DGI   K +    ++ I+LDL L  + 
Sbjct: 3   KILIIEDEKKISRYLQLELEHEGYSV---DIASDGIMALKLFGENFYNIILLDLMLPKLS 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R +R  K   PV +L+       K+  L  GADDYI+KPF   EL+ARIR  +R 
Sbjct: 60  GEEVCRRIR-KKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRH 118

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++  +    +I    + ++L+ K V VQ   I LT  E+ ++  L L +   L++E  LN
Sbjct: 119 NKEFSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILN 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++        KI+DV+I  LRKK+      K  I TV G GY+L++ +
Sbjct: 179 NIWGYDYNGGEKIVDVYIKSLRKKVDFRE--KKLIHTVRGFGYMLKKES 225


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L SE ++  +   G   ++L   Y  D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + V     P+ +L+      DKV GL +GADDY++KPF+  ELVAR +A++RR    
Sbjct: 74  TKRI-VTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++    L+++   + V ++G  IHLT  E+ ++  L+ +    LT+E  
Sbjct: 133 KVIAKNSENEKVLEFHGLTIDPAQRLVVLRGEEIHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSEMIRTVHGVGYAF 234


>gi|239820125|ref|YP_002947310.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239804978|gb|ACS22044.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +   LK+E F V     G  G+EL +  +   +ILDL L  I G E+
Sbjct: 5   ILIVEDDPRVADFLVRGLKAEGFAVTHARTGPQGLELARRGDLALLILDLMLPGINGLEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R     TPV +L+ MS+ EDKV GL+ GADDY++KPF+ EEL+ARI A++RR R  
Sbjct: 65  CQTFRAEGGQTPVLMLTAMSTTEDKVNGLRLGADDYLTKPFDFEELLARIEALLRRGRDL 124

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +      +L ++ +   VE  G  I LT KE   +ELL        ++E  L  ++ 
Sbjct: 125 RLRVTTLRVANLVLDRERMRVERAGQPITLTAKELAFLELLMSAPGRVYSRERILATVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++P   I+DV++ +LR K+ +       ++TV G GY + E A
Sbjct: 185 THEDPLTNIVDVYVRRLRMKI-DGDHAVQLLQTVRGLGYRISETA 228


>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAAR-PVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 240


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    ++V+   LG++G++L   K  + D ++LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRR----SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR    ++  +QS  +T G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 IRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLN 183

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E     + +      + + IDV I +LR  + +       I TV G GY
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233


>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
          Length = 223

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +   ++  L+ + + V+  + G + IE       D ++LD+ + +  GFE
Sbjct: 3   KILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQAS-KSPDLMLLDVNMPEADGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V R +R   +S P+  L+     EDK++G  SG DDYI KPF+ +EL ARI A +RR  R
Sbjct: 62  VCRKVR-DHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRRDHR 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A S +   GD  VN   KTV  +  ++ LT KEY +IELLSL       KE     ++
Sbjct: 121 STAASNVRFFGDTVVNYTEKTVSCKDEQLDLTKKEYGIIELLSLNAGQVFDKERIYEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E +  +I   I ++R KL   +   +++ TVWG GY
Sbjct: 181 GYDAEGDSSVIAEHIRRIRAKLGKYS-EDSHLGTVWGMGY 219


>gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +I++IED+ ++   +   LK E + V      ++  E  + ++ + ++LD+ L D  GF
Sbjct: 3   FKIIVIEDEFSINDILTFALKGEGYKVKSASSSKEAREFLQDFKPNLVLLDINLPDESGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           E+ + +  A    P+ +L+  + I DKV GL+ GADDYI+KPF+ +E++ R++  +R   
Sbjct: 63  ELCKFIN-ANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALRRVD 121

Query: 118 --RSRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             R+  +    I   D + + L+ + V   G  I L  KEY ++      KN   T+E  
Sbjct: 122 KYRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTREEI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++      E++ +D+ + +LR KL N   G+++IETV+G GYV+R
Sbjct: 182 LDKVWGIDYCGEIRTVDIHVRRLRAKL-NLDSGQSFIETVFGVGYVMR 228


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGY 231


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G + ++ + +TV V G +I LT KE+ ++ LL+         E 
Sbjct: 123 TLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|171743213|ref|ZP_02919020.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
 gi|171278827|gb|EDT46488.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 14/226 (6%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  
Sbjct: 1   MVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEAT 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----- 118
           + + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR     
Sbjct: 61  KRI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAK 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L
Sbjct: 120 VIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 180 EEVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAF 220


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T
Sbjct: 122 IETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 115/218 (52%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ALA  I ++L++E +NV     G+  +E     + D ++LD+ L  + G E
Sbjct: 4   KVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+ +L+  S   D V GL++GADDY+ KPF  +EL+AR++A +R    
Sbjct: 64  ICSLIR-QKSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDL V++    V   G  I LT  E+ ++  L        ++E  L  ++  
Sbjct: 123 TTEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGY 220


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D++ LA  I+  L+      +V+  GE+ +   +    D ++LDL L D+ G +V
Sbjct: 4   VLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSGIDV 63

Query: 63  LRALRVAKISTPVCI--LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR +  S  V I  L+      D++RG + GADDY+ KPF+  ELV R++AI+RR  
Sbjct: 64  CRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILRRGA 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +  G L +++ +    V+   + LT  E++++E L  R     T+E  L  +
Sbjct: 124 PTAGGTAPLALGPLRLDVASHRFFVEDREVALTALEFRLLEHLLARLGRVQTREQLLEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + ID  + +LR KL  A   +  +ETV G GY + + A
Sbjct: 184 WGLSSSLETRTIDTHVMRLRDKLGPA---RALLETVRGVGYRMLDPA 227


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  + + L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKLAV 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 118/232 (50%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + V+    GE+ IE       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR  G
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRM-G 122

Query: 122 HAQSLIVT------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S+  T            G L V+ + + V   G RI LT  E+ ++ELL       +
Sbjct: 123 PTVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVV 182

Query: 170 TKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 183 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +   L+S  + V     G++ + + +  E   IILDL L  I G EV
Sbjct: 8   ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDGLEV 67

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+   +    P+ +L+ +    DK+ GL+ GADDYI+KPF+  E+VAR+RA++RR  
Sbjct: 68  CRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRRVE 127

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +      S+    DL ++     V + G R+ LT KEY+++++ +       ++E  
Sbjct: 128 DRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSREHL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGY 219
           L  ++      + + +DV +C LR+KL  A      YIETV G GY
Sbjct: 188 LEKVWGYDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGY 233


>gi|258545920|ref|ZP_05706154.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
 gi|258518798|gb|EEV87657.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 115/230 (50%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ +  ++   LK   + V     G   +       +D I+LDLGL    G 
Sbjct: 1   MRILLAEDDRMIGEAVHAGLKDAAYAVDWVKDGAMALRAAASENYDLILLDLGLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    +TPV IL+    ++ ++RGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  DVLAELR-QNAATPVLILTARDDLDSRLRGLDGGADDYLIKPFELAELLARMRAVLRRHG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H+ +  +   + + L+  T E + H       LT +EY ++  L  R    L++    +
Sbjct: 120 QHSANNELDNGI-ITLNPATHEARRHDNGETRQLTAREYTILHALMQRPGHILSRAELED 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             Y   +E E   ID  I  LRKKL     G + I  V G G+ +   AK
Sbjct: 179 KTYGWGEEVESNAIDYLIHALRKKL-----GADSIRNVRGVGWCVAREAK 223


>gi|258541387|ref|YP_003186820.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632465|dbj|BAH98440.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635522|dbj|BAI01491.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638577|dbj|BAI04539.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641631|dbj|BAI07586.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644686|dbj|BAI10634.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647741|dbj|BAI13682.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650794|dbj|BAI16728.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653785|dbj|BAI19712.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
           3283-12]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+++ L++E FNV     GE  ++    Y  D  +LD+ +  + G E+
Sbjct: 9   IALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALQGLTAYPVDLAVLDIKMPRMDGMEL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR  + + PV  LS  +   D++ GL+ GADDYI+KPF++  L+ RIRA++RR   S
Sbjct: 69  LQRLR-TRSNLPVIFLSSKNEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNEVS 127

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  A        +V G+LS++        +G  + LT  E+ +++ L+ R     +++  
Sbjct: 128 RAEANGEPTGGALVRGNLSLDELRHKCTWKGEDVPLTVTEFLLVKTLAQRPGLVKSRDQL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  Y      + + ID  I ++RKK        N IET++G GY  RE+
Sbjct: 188 IDAAYGDTVYVDDRTIDSHIKRVRKKFRQVDDEFNQIETLYGIGYRYRED 237


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L+ EN+ +     G + +EL     +D I+LD+ + +  G 
Sbjct: 5   IRILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +A+R  K +TPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCQAIREKK-ATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTS 123

Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      ++ L+V   L+++ DA  V      ++LT KEY+++  L+        +
Sbjct: 124 TQSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
           E  L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 184 EQLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGY 232


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+  +   I+  L++  F V V D GED +E       D  ILD+ L  I G EV
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGIDGLEV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+      + P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+AR++A+ RR  
Sbjct: 66  CRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFRRVN 125

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +    ++  G++ ++   + V      + +  KE++++++L L K   L++E  L+ 
Sbjct: 126 TTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E + +DV I  LR+K+ +      YIETV G GY   +   D
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRFTDKNPD 235


>gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48]
 gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48]
          Length = 226

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L+++  +     LG   +E  +    D +ILD+GL DI GFE 
Sbjct: 4   ILIVEDESAIADTLVYALQADGHSTEWVSLGSAAVEQQRLRPADLVILDIGLPDISGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  LS   +  D+V GL+ GADDY+ KPF+  E+ AR+RAI++R    
Sbjct: 64  CRQLRRFS-EVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAPR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +       ++  A  +  +G  + LT  E+++++ L  +     ++E  L+ L    
Sbjct: 123 PEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGLGVAS 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    + ID  I  LR KL   A     I+T  G GY
Sbjct: 183 DVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGY 219


>gi|115359104|ref|YP_776242.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|170701807|ref|ZP_02892740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171317681|ref|ZP_02906865.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172063886|ref|YP_001811537.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|115284392|gb|ABI89908.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|170133286|gb|EDT01681.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171097156|gb|EDT42007.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171996403|gb|ACB67321.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 220

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTAYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR    + P  I++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SVLASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGYRIGDGA 220


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    ++V+   LG++G++L   K  + D ++LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRR----SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR    ++  +QS  +T G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 IRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLN 183

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E     + +      + + IDV I +LR  + +       I TV G GY
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 127/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|167585929|ref|ZP_02378317.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  ++KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGAVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        YI T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEYIVTETGVGYRL 228


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RILL+EDD  + +++   L    + V   D   DG E   KFYE  +  +ILD+ L  +
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQV---DACTDGNEAYTKFYENTYQLVILDIMLPGM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+LR  R AK  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++R
Sbjct: 60  NGHELLREFR-AKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   A+ + V G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ 
Sbjct: 119 RSGALAKEIRV-GRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E +   +   I  LR KL      +N I+T+ G GY L E+
Sbjct: 178 IWGYDFESDGSTVHTHIKNLRAKLP-----ENIIKTIRGVGYRLEES 219


>gi|94972216|ref|YP_594256.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554267|gb|ABF44182.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 223

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--P 58
           MR+L++EDD  +A  +   L+ + + V      E+G  L   +  D +ILD+ L +    
Sbjct: 1   MRLLIVEDDPHIAELLRDGLREDGYAVDHAASAEEGFALAGLFPHDLLILDVMLPEGIDA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+ + + LR      P+  L+   ++ED+V GL++G DDY+ KPF   EL AR+RA++RR
Sbjct: 61  GYRLGQRLREVGNLAPILYLTARGTVEDRVTGLEAGGDDYLIKPFAFRELRARVRALLRR 120

Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + G+A  +L ++G   ++L AK V   G R  LT KEY ++ELL+     T T++  +  
Sbjct: 121 AGGYAHNTLPLSGGFMLDLTAKEVYRSGTRCDLTRKEYALLELLAHHPGRTFTRDEIIER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+DG +  E K+IDV++  +R+K       +  I TV G GY L
Sbjct: 181 LWDGEEGVEPKVIDVYVSSIRRKTE-----EGLIGTVRGVGYRL 219


>gi|326790336|ref|YP_004308157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541100|gb|ADZ82959.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  ++ +I   LK E+F +     GED +   + + +D +ILDL L    G 
Sbjct: 2   IKVLLVEDNHKISDNIYTYLK-EDFQIDQVYTGEDALLHLEAFSYDLVILDLMLPGKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  ++  K    V IL+    + DK+R  Q GA+DY++KPF  EEL AR+  I++R  
Sbjct: 61  SVLAEVQNKKRQLGVIILTAKEDLGDKLRAFQLGAEDYLTKPFFMEELKARMYVILKRLG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +V  DL ++L  K+V ++  +I L  + + ++E L L K+  L KE     + 
Sbjct: 121 KMTEENTLVFKDLHLDLKQKSVWIKDEKIELNERLFHLLEYLMLNKDILLFKEQIFERIC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +II+V++  LRKKLS   G   Y+ T  G GY+L + 
Sbjct: 181 GYDSDASTEIIEVYMSHLRKKLS-PFGYDVYVVTKRGMGYMLEDK 224


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+ +  E D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 10/208 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL ED+K L+ ++  +L   N + Y TD+  DG++  +  E   +D ++ D+ +   
Sbjct: 1   MRLLLAEDEKELSTAVATIL---NASGYETDIVSDGVQAVEAAERNSYDCMVFDIMMPGK 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L  +R     TPV +L+  S ++D++ GL +GADDY++KPF  +EL+ARIR++ R
Sbjct: 58  DGITALSEIREKGDVTPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSVTR 117

Query: 118 RS-RGHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R+       L+   +L  N   +T EV+G + I L+ KE +++    L     LT E   
Sbjct: 118 RNGETFTPHLLTFANLEFN--TETQEVKGENTIRLSSKEGKLLRYFLLNPEKELTTETVF 175

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSN 203
            H+++  +E    I+ V+I  LR+KL +
Sbjct: 176 THVWNDAEEETTSIVWVYISYLRQKLDS 203


>gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 250

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D++ +   + L LK ENF    T L G + + L K + FD I+LD+ L DI GFE
Sbjct: 17  ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPDIDGFE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +R    
Sbjct: 77  LCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRGQSM 135

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R    S +     S+      + V G  +H T KE +++  L    N   T E   
Sbjct: 136 LLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQLY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 196 EQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248


>gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
 gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
           15053]
          Length = 217

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +++ I+  L    +  +    G    ++ +   +D ++LD+ L +I G+E
Sbjct: 3   KILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRYDLVLLDIMLPEINGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   +  PV  L+  S + DKV+GL+SGA+DYI+KPF   EL+AR+  ++RR  G
Sbjct: 63  LLEYIR--PLGIPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVLRRY-G 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +   D++V+  ++TV+  G  + LT KEY+++ L +  +N  L ++     ++  
Sbjct: 120 KTQRTVTLFDITVDTLSRTVKRNGETVALTAKEYELLLLFAQNRNVALYRDFLYERVWGE 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D+ + ++RKKL    G ++ I  V+  GY L
Sbjct: 180 TYLGDSRTVDLHVQRMRKKL----GLEHKIVPVYKVGYRL 215


>gi|154495976|ref|ZP_02034672.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
 gi|150274859|gb|EDN01915.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC
           29799]
          Length = 223

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 9/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI-ILDLGLTDIPGFE 61
           IL++EDD+++   +    +S  + V   + GE   E  +  +   + ILD+ L  + G E
Sbjct: 5   ILVVEDDESIREMLRYYFQSVGYTVRAYESGEAMFEGEQGQDCPVLCILDIMLPGMDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR LR  +   S PV +L+  ++  D+V GL++GADDY+ KPF   EL AR++A++RR+
Sbjct: 65  ILRRLRADRDRESVPVILLTARTAEMDRVNGLEAGADDYVVKPFGIMELQARVKAVLRRT 124

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R    + LI  GDL ++  A+ V   G ++ LT KE++++ LL+  +   LT++  L  +
Sbjct: 125 RREEDNRLIRCGDLEIDPAARVVRRGGEQVDLTFKEFELLRLLATHRGVALTRDEILQSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D     E + +D+ +  LR+KL     G+ YI TV G GY
Sbjct: 185 WDYDYTGETRTVDMHVKTLRQKL-----GEEYITTVRGVGY 220


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L ++ + + V + GE   E+ K +  D +I D+ + ++ G  
Sbjct: 4   RILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + LR A+   P+ +LS       KV+ L  GADDYI+KPFN  EL+ARIRA +RR+  
Sbjct: 64  LCKELR-ARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAPV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GD  ++  A  V+V+G  + LT KE+ ++  L+      +     L+ ++ 
Sbjct: 123 AEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + + + VF+ +LRKK+      K YI T    GY
Sbjct: 183 ADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGY 221


>gi|84685172|ref|ZP_01013071.1| DNA-binding response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666904|gb|EAQ13375.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654]
          Length = 242

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 127/228 (55%), Gaps = 20/228 (8%)

Query: 1   MRILLIEDDKALAHSIELMLK----SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR+L++ED   LA ++         + +    VT+  ED + + ++   DA++LD+ L D
Sbjct: 20  MRVLMVEDATDLAETVSARFARVGIACDLAATVTE-AEDHLAVQRY---DALVLDINLPD 75

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G ++LR LR     TPV +L+ + S++++V  L   ADDY+ KPF++ EL AR+RA+V
Sbjct: 76  GSGTDLLRRLRTGGNRTPVLMLTALVSVDNRVDALDLRADDYLVKPFDQRELEARLRALV 135

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR        I  G LS +    +  + G ++ LT +E  ++ELL       L+KE    
Sbjct: 136 RREAAQKSDTIQLGALSYSPSQMSATLDGEKVTLTRREAALLELLVRFPEQYLSKE---- 191

Query: 177 HLYDGR---DEPEVKI--IDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            LYDG    D+ +V +  I+++I +LRK+L+ ++ G   IET  G GY
Sbjct: 192 RLYDGLFAFDDADVGLNAIELYIARLRKRLAGSSVG---IETQRGVGY 236


>gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++DD  + + +    ++E+         E+     +  + D I+LD+ L D  G 
Sbjct: 1   MKVLIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIMLPDANGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R      P+  L+   S  D + GL+ GADDY++KPFN   LVARI+A++RR+ 
Sbjct: 61  DLVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTE 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +  +  GD  VNL + TV   G    LT +E+++++LL+       T+E  L+ +
Sbjct: 121 ISGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +DV I KLR+K+     G+ +I+TV G GY
Sbjct: 181 WGMDFFGDFRTVDVHISKLREKV-----GEGFIKTVRGVGY 216


>gi|163750074|ref|ZP_02157317.1| transcriptional regulatory protein RstA, putative [Shewanella
           benthica KT99]
 gi|161330131|gb|EDQ01113.1| transcriptional regulatory protein RstA, putative [Shewanella
           benthica KT99]
          Length = 237

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 18/234 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   L     + P+ ++S +SS ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKLP-DYFAGPILLMSALSSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  S    G LS++   + + +    + LT  E++++ LL+ +    L+++   
Sbjct: 128 PPKVESHGLSF---GKLSIDPHTQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIY 184

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +L    +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 185 QYLLNIDFDGKD----RKIDVRISRLRKKLGDNIDTPFRIKTVWGQGYLFAPEA 234


>gi|158423564|ref|YP_001524856.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330453|dbj|BAF87938.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 222

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +  +L+ +NF V V   GE          +D +ILDL L  + G 
Sbjct: 1   MRLLLVEDNLELAEWLAKILRRDNFVVDVLHDGEAADHALSLETYDLVILDLTLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR    + PV IL+  +S++ +V GL  GADDY++KPF+  EL ARIR  +RRS 
Sbjct: 61  HLLRRLRGRNDAVPVIILTANASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +I  G L+ +   +   +    + LT +E+ ++E L ++   T++K      ++ 
Sbjct: 121 RRADPIITCGGLAFDTKTRQFRLGEAPLSLTPREHAVLEALLVKTGQTVSKAQLSQTIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D  +   I++++ +LR+KL    G    I T+ G GY+LR
Sbjct: 181 LDDLADPSAIEIYVHRLRRKLE---GSDVSIVTLRGLGYLLR 219


>gi|139439274|ref|ZP_01772716.1| Hypothetical protein COLAER_01732 [Collinsella aerofaciens ATCC
           25986]
 gi|133775298|gb|EBA39118.1| Hypothetical protein COLAER_01732 [Collinsella aerofaciens ATCC
           25986]
          Length = 203

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 107/181 (59%), Gaps = 9/181 (4%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL D+ G +V+ ++R A    P+ ++S  S   DK+R L +GADDY++KPF+ EE
Sbjct: 21  VLLDLGLPDMDGVKVVESVR-AWSGMPIIVVSARSEDADKIRALDAGADDYLTKPFSVEE 79

Query: 108 LVARIRAIVRRSRGHAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
           L+ARIR  +RR   +AQ+  V       TG+L ++ DA    + G  +HLT  EY+++ L
Sbjct: 80  LLARIRTTLRR-LSYAQTGGVVSEGSFDTGELHIDFDAGIATMDGEELHLTPIEYKLLCL 138

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L+   +  LT +  L+ ++    + ++  + VF+  LRKK+ +      YI+T  G GY 
Sbjct: 139 LAHNADKVLTHQFILHEIWGTATKSDLASLRVFMGTLRKKIESDPAHPRYIQTHVGIGYR 198

Query: 221 L 221
           L
Sbjct: 199 L 199


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY------EFDAIILDLGLT 55
           RILL+EDDK++  ++   L SE F V      +DG+    F       + D IILDL L 
Sbjct: 13  RILLVEDDKSIRLTVSETLSSEGFRVSSF---KDGLSALDFINNDIKKDVDLIILDLMLP 69

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ R +R  +  TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA+
Sbjct: 70  GLNGLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRAL 129

Query: 116 VRRSRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RRS+ +      + ++I    + + L+   V      I L+ KE++++EL         
Sbjct: 130 IRRSKRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVW 189

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++ L  +++     + K +DV +  LR+KL        +++TV G GY
Sbjct: 190 SRDLILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGY 239


>gi|77465251|ref|YP_354754.1| two-component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126464714|ref|YP_001045827.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|77389669|gb|ABA80853.1| Two-component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126106525|gb|ABN79055.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD+  A  +   L +E ++V +V D G D +       +D +++D  +  + G
Sbjct: 1   MKILLAEDDRQTADYLRQGLLAEGYSVDHVPD-GRDALVQATLQPYDLLVVDRMMPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ALR A+I  P+ IL+ M  + D+V GLQ+GADDY+ KPF   EL AR+ A+ RR 
Sbjct: 60  LSLVKALRSAQIKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRP 119

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+ L+  GDL+++   +TV   G  I L  +E++++E L        T+ M L  
Sbjct: 120 ALAEGARDLLRVGDLTLDTVRRTVSRGGTEIDLQPREFRLLEHLMRAAGRVQTRTMLLEA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P   +++  + +LR K+      K  + TV G GY+L+
Sbjct: 180 VWDFHFDPGTSVVETHMSRLRAKIDRPF-DKPLLHTVRGAGYMLK 223


>gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23]
 gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23]
 gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W]
 gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II]
          Length = 242

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 126/245 (51%), Gaps = 22/245 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+ ++A  + +  + E + V     GE+G  L KF E    FD I LDL L  
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEG--LAKFKEAPDSFDIITLDLNLPK 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  MDGMQVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRSR-----GHAQSL--------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLS 162
           RR+      G  Q+         + T    ++   +   + G +I  LT KE+ ++  LS
Sbjct: 119 RRAEVGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLS 178

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   
Sbjct: 179 KSPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKVEKV--GPQIIQTVWGVGYKFD 236

Query: 223 ENAKD 227
           ++  D
Sbjct: 237 DSGLD 241


>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 240


>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +I + L++E + V+    G + I+L + +    II+D+ +  + G 
Sbjct: 1   MNILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
                +R   +  P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR  
Sbjct: 61  TATMKIRQDNM-IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYT 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   + ++  TG L ++ + K + V    +HLT  +Y++++LL+       T E   
Sbjct: 120 TFGSLERSSAVFQTGGLVIDDEQKVITVDKQEVHLTPVQYKILKLLTANAGRVFTIEEIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++ R       + V I K+R+K+        Y++ VWG GY
Sbjct: 180 EKVWNVRAINPENTVSVHIRKIREKIEINPKEPKYLKVVWGVGY 223


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + D +ILD+ + ++ G
Sbjct: 1   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|194289106|ref|YP_002005013.1| response regulator (ompr family) in two-component regulatory system
           with kdpd, regulation of potassium translocation
           [Cupriavidus taiwanensis LMG 19424]
 gi|193222941|emb|CAQ68946.1| response regulator (OmpR family) in two-component regulatory system
           with KdpD, regulation of potassium translocation
           [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +   +   L+SE   V+  +  + G+        D +ILDLGL D  G ++
Sbjct: 9   VLLVEDEPHIRRFVRSTLESEGCTVHEAESLKRGLIEAGTRRPDLVILDLGLPDGDGVQL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  +R      P+ +LS  S   DK+  L +GADDY++KPF   ELVAR+R ++RR +R 
Sbjct: 69  ISEMRTWA-DAPILVLSARSGETDKIGALDAGADDYLTKPFGVGELVARLRVLLRRHART 127

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           HA+  S I+ GD+ V+L ++ V   GH +HLT  EY+++ +L   +   +T    L  ++
Sbjct: 128 HARGASQIMFGDVHVDLASRVVTRSGHAVHLTPIEYRLLAVLIAHRGKVMTHRELLREVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + + V++  LR KL        ++ T  G GY
Sbjct: 188 GPSHAESSQYLRVYMGHLRHKLEADPARPAHLLTEIGLGY 227


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  L   +   L++E FNV+    G +G+ + +  + D I+LD+ + ++ G + 
Sbjct: 5   ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           +RA    +  TP+ +L+      DK+ GL+ GADDYI+KPFN  E++AR+RA++RRS + 
Sbjct: 65  MRAWN-KEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+ ++  G++ +   A T+ V    + LT  E++++  L        ++   L+    
Sbjct: 124 QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E   + IDV I  LR K+        YIETV+G GY
Sbjct: 184 QAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGY 222


>gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 125/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+++ + V     GE+G+ L      + ++LD+GL D  G E
Sbjct: 12  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIR+++R++  
Sbjct: 72  VLREIRQWS-NVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQAGA 130

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 131 GSTVEESVFDDGRLHIHLGLREVTLHGEAVPLSRKEYALLALLLKHAGRVVTQPQLLREV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL +AA   +YI T  G G
Sbjct: 191 WGPTHEEDTHYLRILVGKLRQKLQDAAADPHYIVTEPGVG 230


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F   +   G +G+ L    ++  I++DL L  + GFE
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  K   P+ I+S  +   DK+R    GADDYI+KPF+  ELVAR +A + R + 
Sbjct: 64  LCRQIRKNK-EVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122

Query: 121 --GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             G  +++    I    L ++  A+ V V+   +  T +E+ ++E L+   N   +K   
Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V + KLR+KL   +    YIETVWG GY
Sbjct: 183 FERIWGMDSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGY 227


>gi|294651309|ref|ZP_06728630.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822781|gb|EFF81663.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 234

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 120/218 (55%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   +++ L+++ + V V + G  G+E+      D +ILDLGL D+ G +V
Sbjct: 11  ILIIDDEPQIRKFLDIALRAQGYRVQVAENGMKGLEILATRGADLLILDLGLPDMDGHDV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR      PV +LS       K++ L +GA+DY++KPF+ +EL AR+R + R     
Sbjct: 71  LKELRQWS-DVPVIVLSARPDENQKIKLLDAGANDYVTKPFSIQELCARMRVLFRNKAPT 129

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++   G L V++    V V+   I LT KE Q++ LL   +   +T++  +  L+ 
Sbjct: 130 LEQKTVFNDGKLFVDIAEHIVRVENEEIILTKKELQLLALLIRHQGKIVTQKQIMTELWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              E +   + + + KLR K+ ++A   +YI T+ G G
Sbjct: 190 VSHEEDTHYLRILVKKLRTKIGDSALAPSYIFTIAGVG 227


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  I   L+ E F   V   G DG+E       D I+LDL L  + G EV
Sbjct: 4   VLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLGTEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + +R +  +   PV +L+      DKV G + GADDY+ KPF+  EL+ R++A++RRS 
Sbjct: 64  CKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRRSK 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  A + +  G + ++++   V V G  I+ TG E++++  L+ R     ++++ L  +
Sbjct: 124 TRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDVLLRDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +D  I +LR KL  A    + I+TV G GY L
Sbjct: 184 WGYNFVDDSRTVDTHITRLRTKLGEAG---DLIKTVRGFGYKL 223


>gi|312130843|ref|YP_003998183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311907389|gb|ADQ17830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 226

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + +  +++ + V      ++G+ L   +  D I+LDLGL D+ G E+
Sbjct: 6   LLIIDDEPQIRRLLSINFQNQEYKVIEAATADEGLRLAASHLPDLILLDLGLPDLSGHEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR    + P+ IL+  +  ED V  L +GA+DY+ KPF   EL+AR+R+ +R +   
Sbjct: 66  LKQLR-EWYTKPILILTVENKEEDIVVALDNGANDYLCKPFRVGELLARVRSALRMNTTE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + S+I  G L V+L  +T  + G  + LT  E+ ++ LL+      LT +  L  ++   
Sbjct: 125 SSSIIQLGALEVDLVGQTTRLDGEILKLTSTEFTLLALLAKHAGRVLTHQFLLKEVWGVG 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + E + + VF+ +LRKK+         + TV G GY L
Sbjct: 185 YQTETQYLRVFVAQLRKKIEKDPNHPLRLVTVSGVGYRL 223


>gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 229

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++L++ED+      ++  L    + V +V D G DG+       +D I+LD+ L  + G
Sbjct: 1   MKLLIVEDEVKAGEYLQKGLVESGYVVDWVRD-GVDGLYHATSEPYDLILLDIMLPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           ++VL  LR + I TPV +L+    IED+VRG + GA+DY+ KP+   EL+ARI+ + R  
Sbjct: 60  WQVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHH 119

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R +  +Q+L +  DL +++  +     G  I LT KEY ++ELL  ++   L++   
Sbjct: 120 TSSRVQTSSQTLQI-ADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTI 178

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++D   + +  +IDV I +LR K+ +       I T+ G GY L
Sbjct: 179 ASLVWDMNFDSDTNVIDVAIKRLRNKV-DKPFETPLIHTIRGMGYKL 224


>gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700]
 gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F + V + G++ + L   + +D I+LD+ +  + G E
Sbjct: 3   KILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALLD-HSYDLILLDIMMPILNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R    STPV +L+      D++ GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 62  TLKQIR-KDFSTPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAILRRT-A 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR--------IHLTGKEYQMIELLSLRKNTTLTKEM 173
            A S+    DL     A  +   G +        + LTG E+ ++  L +     LT+E 
Sbjct: 120 QANSVKDPADLDKVEFAGILLYPGRQQALFGSKDLELTGTEFTLLLKLIMNPGLILTREE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +      P  + ID+ +  LRKKL N      + +T+ GRGY+L
Sbjct: 180 LSQEVLGKPLTPFDRAIDMHMSNLRKKLPNRPDDLPWFKTLRGRGYLL 227


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E
Sbjct: 4   RILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   PV +L+      ++VRGL +GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H  +L+  GD+ ++ +   V   G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 184 WGQDVYIDERTVDVHVGRLRKAI-NRGRQPDPIRTVRGAGYSFNE 227


>gi|332534920|ref|ZP_08410740.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035655|gb|EGI72145.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 230

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V D G++     +    D +ILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVEVLDRGDEVFNYLENNTPDLMILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKFTLPILMLTAKGEDFDQVLGLELGADDYVIKPAEPRVLLARINALLRRGQP 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             +S   +  GDL ++  ++ V++    I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 IVKSSEELQFGDLVIDKTSRIVKLSDSEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              YDG D    + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLD----RTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 222

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ +  + G++
Sbjct: 3   RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  +  TPV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S ++ G   + LD  TV    H + L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEQTEDFQ--IMTVRGLGY 218


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 130/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIR-KNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 121 -GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V   + G  G       ++D I+LD+ L    G+
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    ST V +L+    ++DKVRGL  G DDY+ KPF+  EL+AR+R+I+RR +
Sbjct: 61  TVLKNLRRTH-STSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++L  +     G  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 TRDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  ++D  I +LR K+ +    K  I TV G GYVL E    +
Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDNYEPK-LIHTVRGMGYVLEERGPSQ 226


>gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016]
 gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       D        +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S  
Sbjct: 63  VCTEIKEMQ-DLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTALRKSGR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++  + G + V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 122 SPRAFEICG-VHVDMASGVVKKNGSEVFLSALEYRLLLVFINNPKSIVTRSRLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E      + V+I +LR+K+ N       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|158319660|ref|YP_001512167.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139859|gb|ABW18171.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 12/229 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED++ ++  I + L+ + +       G++ + L   +  D I++DLGL D  G EV
Sbjct: 7   IMIVEDEEPISEFISIKLELQGYRTLKAYNGQEAMSLAASHCPDLILMDLGLPDKDGMEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R   +  P+ I+S     +  V  L +GADDYI+KPFN   LVAR+R  +R  RGH
Sbjct: 67  LKFIRGWSL-VPIIIISARHEEKFIVSALDNGADDYITKPFNNAILVARVRTALR--RGH 123

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +            DL ++ D + V V G+ +HLT  EY++I LLSL   T +T E  
Sbjct: 124 IAKIKNSNMNKSFSLDDLYIDYDKRIVTVAGNPVHLTPIEYRIIVLLSLNAGTVVTHEFL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              L+ G    + K + V +  LR+K+        YI T  G GY + E
Sbjct: 184 SRELW-GPYVNKSKALRVNVANLRRKIEKNTAEPQYILTEMGVGYRMLE 231


>gi|108798318|ref|YP_638515.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867415|ref|YP_937367.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433983|ref|YP_001069674.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768737|gb|ABG07459.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693504|gb|ABL90577.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233783|gb|ABN97183.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVVGDGTQALSAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLR-ADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  GD+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAELLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGY 223


>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 244


>gi|310826637|ref|YP_003958994.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738371|gb|ADO36031.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 3/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD ++     +   S  + VY      + ++  +    D I+LD+ L D+ GFEV
Sbjct: 4   LLIVDDDASILEVTRIYFTSRGYKVYTAQNAGECLKTSEHMPLDCIVLDVALPDMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              ++  K + P+  +S  +  + ++ G  SG DDY+ KPF+  EL  RI A +R+  G 
Sbjct: 64  CEEVK-KKTNVPIIFVSNYAEEDKRINGFVSGGDDYVIKPFSLRELELRICARIRQQEGK 122

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G LS+N  A++V  +   I LT  E+ ++  L+  +N   +++     ++ 
Sbjct: 123 TKCSETLDFGKLSINKAARSVAYKEDMISLTAAEFDILFFLANHENQVFSQKDIFERVWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             D      + V + ++R+KL++ +    YI+TVWG+GY    + K E 
Sbjct: 183 LPDLGNAHTVQVHVAQIRRKLNSFSEDHQYIQTVWGKGYKFVADKKAEA 231


>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
 gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  ++TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-AKPLLQTVHGVGYRLAEG 223


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  +I    + + + V     G   +E       DAI+LD+ + ++ G EV
Sbjct: 14  LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TPV +L+   ++ D+V GL +GADDY+ KPF   EL AR+RA++RRS   
Sbjct: 74  CRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSEYD 133

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +V  DL ++ +++     G  I LT  E+ ++ELL       L +E+  + ++
Sbjct: 134 PVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDRIW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                PE   ++VF+  +R+K +   G    ++TV G GY LR  A
Sbjct: 194 GYELGPESNSLEVFVSCIRRK-TEGGGEPRLVQTVRGFGYTLRVPA 238


>gi|226349583|ref|YP_002776697.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226245498|dbj|BAH55845.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 224

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++   L ++   V V   G  G+       FD ++LD+ L    G+
Sbjct: 1   MRVLLVEDETRLAETVRRGLVADGCTVQVEHDGVAGLAAAVGGGFDVVVLDIMLPGKHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R +R  ++ TPV +LS      D       GADDY+ KPF+   L+AR+RA+VRR  
Sbjct: 61  DVVREMRRQQVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLIARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS++   + V     R+ LT +EY ++E L     + +TK   L  ++D
Sbjct: 121 PPRPPVLSVAGLSLDPAMRRVTRGETRLQLTPREYSVLEFLMRHAGSVVTKHDILQAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V+I  LR+K+ +A  G   I+TV G GY +
Sbjct: 181 ANYEGDDNIVEVYIGYLRRKI-DAPFGTTSIDTVRGVGYSM 220


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL +DD  L+  I+     E + V     G + +EL      D +ILD+ + ++ GF
Sbjct: 2   VKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E L+ +R  K S PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR S
Sbjct: 62  ETLKQIR-NKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAS 120

Query: 120 RGHAQSLIVTGDLS---VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +          DLS   +    +TV ++G  + LT  EY ++E + +     LTK+    
Sbjct: 121 QEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +     + +D+ I  LRKK+ N   G   I+TV G GY+   N +
Sbjct: 181 KALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSNEQ 230


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  ++  ++  L++  F+V     G   + + +    D ++LDL L  + G E
Sbjct: 57  RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A    PV +L+  +   D++ GL+ GADDY++KPF+  EL  R+++++RR+  
Sbjct: 117 VFRRLR-AHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G L V+  A+T    G  + LT +E+ ++  L  R     T+   L H
Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G    +   + V I +LR+K+ +       + TVWG GY
Sbjct: 236 VW-GWSYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGY 276


>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
 gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+K + + I  +L   N+ V     G++ +EL      D I+LDLGL D+ G EV
Sbjct: 7   VLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGLPDMDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ ++S      +KV  L  GADDYI+KPF   EL+ARIR  +R  +  
Sbjct: 67  LKTIR-GWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQVT 125

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++   GDL+++ D + V +  + +H T  EY+++E+L+      +T +  +  +
Sbjct: 126 VDVPERTIFSVGDLTIDFDKRLVTLNNNPVHFTPIEYKILEILTQYPGKVVTYDQIIKDI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G    E + + V +  +R+K+        YI T  G GY
Sbjct: 186 W-GPYTNENQTLRVNMANIRRKIEKNPAEPKYILTEVGVGY 225


>gi|153835992|ref|ZP_01988659.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149750746|gb|EDM61491.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 243

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +   V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHQVSRESSVAAGRNAYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQQQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A         +  +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPERAEEGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSFSDSEHHFIQTVWGVGY 237


>gi|161524170|ref|YP_001579182.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351073|ref|YP_001946701.1| two-component system signal transduction response regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160341599|gb|ABX14685.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189335095|dbj|BAG44165.1| two-component system signal transduction response regulator
           [Burkholderia multivorans ATCC 17616]
          Length = 232

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRQPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 LGGANESPKVSFGTVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
 gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
          Length = 228

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L    +  L    F V V   G + +   +  + D +ILD+ L    GF V
Sbjct: 4   ILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQSLQPDLMILDVMLPGKDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+ +L+      D+V GL+ GADDY+ KP     LVARI AI+RR + H
Sbjct: 64  CREVR-DKHSLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAILRRHKPH 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178
            Q   +V G L ++  ++ V +    I LT  E++++ LL+      L ++     +   
Sbjct: 123 RQHEELVFGQLKIDKTSRLVFLNQEEITLTSHEFELLWLLASNAGEVLNRDYVHQQMIGR 182

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            YDG D    + +DV I +LRKKL +       I+TVWG+GY+   +A
Sbjct: 183 EYDGLD----RTVDVRISRLRKKLLDNTDKPYRIKTVWGQGYLFVSDA 226


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ + + ++  +L+ E F+V + + G D +        D ++LDL L  + G E
Sbjct: 3   RVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ ++S   +  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQTS-SVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVA 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G + +++D   V V G    L  KE++++E         LT+   ++ +
Sbjct: 122 EDDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + K +DV + +LR K+         + TV G GY
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGY 222


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 120/233 (51%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +DD+A+  S+   L    + V +   G + +E+      D  ILD+ +    G 
Sbjct: 1   MKILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR      P+ +L+   ++ ++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 61  EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   +   +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++ G D P     ++V+I  LRKK +   G    I TV G GYVLRE A 
Sbjct: 181 LEEVW-GYDFPTSGNALEVYIGYLRKK-TEQDGESRLIHTVRGVGYVLRETAP 231


>gi|260466893|ref|ZP_05813076.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029289|gb|EEW30582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 243

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 12/237 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  + F V V     +  +     +FD I+LD+ L D  G ++
Sbjct: 8   ILVVDDDREIRTLLGRYLDGQGFRVSVAADRRECEQKLGLGQFDLIVLDVMLPDGSGLDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR  K   PV +L+ +    D++ GL+ GADDY+ KPFN  EL ARIRA++RRS   
Sbjct: 68  CRALRDRKPHIPVILLTALKEDVDRIIGLELGADDYLGKPFNPRELTARIRAVLRRSTPE 127

Query: 123 AQSLIVTGDL----SVNLDAKTVEV---QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +    S  L+  T +V   QG  + LTG E+ ++++   R    L+++  L
Sbjct: 128 DAPAPPRARIYRFASYRLEPDTRKVTDAQGAAVDLTGAEFDLLQVFLDRPGRLLSRDQLL 187

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           + L  GR+ +P  + +DV + +LR+K ++   G  + +TV   GY L   A+ ET E
Sbjct: 188 D-LTQGRERDPLERSVDVLMSRLRRKFTDTGDGPLF-KTVRNGGYQL--TARVETVE 240


>gi|238759013|ref|ZP_04620184.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
           35236]
 gi|238702824|gb|EEP95370.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
           35236]
          Length = 221

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 116/218 (53%), Gaps = 4/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+ED   L+H ++  L    F V V + G     L +   +  ++LD+ L  + G E+L
Sbjct: 1   MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYALVVLDVALPRLNGLELL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR    + PV +L+  + + D+V+GL  GADDY++KPF  +EL ARIRA++RRS G  
Sbjct: 61  ARLRKRGQTLPVLLLTARTEVADRVKGLNQGADDYLTKPFELDELEARIRALLRRSIGET 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              I  GDL+ + D     +    + LT +E  ++  L  R+   + K+     ++   D
Sbjct: 121 TQTIQFGDLTYH-DEGYFLLSNKPLALTPRESAVLTSLIHRRGRPVAKQQLFEQIFTLAD 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   + I++++ ++RKKL    G    I+T+ G GY L
Sbjct: 180 EANPESIELYVHRVRKKLY---GSNVVIQTLRGLGYSL 214


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I++ LK   + +     G + ++     +FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  +   P+ IL+     +D V G + GADDYI+KPF   EL+AR+ AI+RR  G
Sbjct: 80  ACQRIR-ERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  G++ ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+ +       I TV G GY + E
Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKMAE 244


>gi|308447709|ref|XP_003087498.1| hypothetical protein CRE_07193 [Caenorhabditis remanei]
 gi|308255092|gb|EFO99044.1| hypothetical protein CRE_07193 [Caenorhabditis remanei]
          Length = 199

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 102/185 (55%), Gaps = 9/185 (4%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           F  I+LD  L    G  + R LR + I TPV +L+   S  D++ GL++GADDY+ KPFN
Sbjct: 10  FSLIVLDFMLPVEDGLSICRRLRSSNIDTPVIMLTARGSDSDRIAGLEAGADDYLPKPFN 69

Query: 105 KEELVARIRAIVRR-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
             EL+ARIRA++RR       +      ++  G  S++L  +T+  +G  + LT  E+ +
Sbjct: 70  PNELLARIRAVLRRQVREVPGAPSQNVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAV 129

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWG 216
           ++ L       LT++  +N L  GR+   + + IDV + +LR+ +        YI+TVWG
Sbjct: 130 LKALVQHPREPLTRDKLMN-LARGREWGAMERSIDVQVSRLRRLIEENPARARYIQTVWG 188

Query: 217 RGYVL 221
            GYV 
Sbjct: 189 VGYVF 193


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++L L+   + V      ++  + C  + FD I+LD  L D  G +
Sbjct: 3   RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEA-DGCLEHGFDLILLDRNLPDGRGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR      P+  L+   +  D + G ++G DDYI+KPF+ E L  RI A++RRS  
Sbjct: 62  YCRELR-KSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +     GD+SV+ +   V +    I L+  EY+++ELL   K   LT++M +  
Sbjct: 121 ALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 178 LYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D  +   +   ++V I +LR+K+   AG   Y+ TV+G GY   E 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTFGET 228


>gi|270262846|ref|ZP_06191117.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043530|gb|EFA16623.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 224

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MR+LL+ED   L+H ++  L    F V   D+  DG+    L     +  ++LD+ L  +
Sbjct: 1   MRLLLVEDHPELSHWLQKALTGAGFAV---DIAPDGLAADHLLLNERYALVVLDVALPRL 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  LR      PV +L+  + + D+V+GL  GADDY++KPF  +EL ARIRA++R
Sbjct: 58  NGLDLLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS G  Q  +  G L+ + D    ++    + LT +E  ++  L  R+   + K+     
Sbjct: 118 RSVGVTQQALQYGALTYH-DEGYFQLDDKPLSLTPRELAVLTALIHRRGRPVAKQQLFEQ 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   DE   + I++++ +LRKKL    G    I T+ G GY L
Sbjct: 177 VFTLSDEANPESIELYVHRLRKKLQ---GSNVAIVTLRGLGYSL 217


>gi|268680710|ref|YP_003305141.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618741|gb|ACZ13106.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 225

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDIPGF 60
           +L+IEDD  LA  +   LK   +N+YVT+  +   GI      ++D +ILDL L  + G 
Sbjct: 5   LLMIEDDTELAEILSNFLK--RYNIYVTNYEDPYLGISALNLKKYDLLILDLSLPGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R +K   P+ I S  S +EDK+ GL+ GADDY+ KP+  +EL ARI +++RR  
Sbjct: 63  EICKEIR-SKSDIPIIISSARSDLEDKIVGLELGADDYLPKPYEPKELYARIMSVLRRYK 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  H ++ +    L +  ++ T+  QG  + LT  E+ ++  L  + N  +++   L 
Sbjct: 122 KSNNPHEETPMA---LQLKEESHTIFFQGTPLTLTPAEFDVLAHLIKKNNCVVSRAELLG 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +E E + +DV I ++R KL  ++     I ++ G GY L+
Sbjct: 179 SALSLNEENESRSLDVLISRIRTKLGESSKEPKLIHSIRGIGYRLQ 224


>gi|209517560|ref|ZP_03266399.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501973|gb|EEA01990.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 232

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L++E   VY  + G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRTALEAEGITVYDAETGKQGLVEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +   +KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNHG 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++S  V  G+++V+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GASESPQVRFGEVTVDLALRQVTRDGAAVHLTPIEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR KL        +I T  G GY L
Sbjct: 187 GPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRL 228


>gi|159185258|ref|NP_355482.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159140519|gb|AAK88267.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 213

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 1/188 (0%)

Query: 35  DGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94
           D   L +   +D ++LD  L D  G  ++ +LR +K S P+ +L+ + +++ +V GL +G
Sbjct: 24  DADALARDGSYDVLVLDRRLPDGEGLNLVASLRRSKNSVPILVLTALGNVDHRVDGLDAG 83

Query: 95  ADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
           ADDY++KPF  EEL+AR+RA+ RR    A      G+L ++  +  V V G  I L  +E
Sbjct: 84  ADDYLAKPFAIEELLARLRALHRRGPSLADKYTRFGNLGIDPRSNEVSVAGSSIELRRRE 143

Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           Y ++E L  R N  +T+   +  +Y   DE E   +D  I ++RKKL+ A      I  V
Sbjct: 144 YLVLEALMRRPNRIVTRSSLIEAVYTLDDEIESNALDAHISRIRKKLAQAEATVE-IRAV 202

Query: 215 WGRGYVLR 222
              GY++R
Sbjct: 203 RNIGYLVR 210


>gi|119484322|ref|ZP_01618939.1| OmpR subfamily protein [Lyngbya sp. PCC 8106]
 gi|119457796|gb|EAW38919.1| OmpR subfamily protein [Lyngbya sp. PCC 8106]
          Length = 234

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MRILL ED+  L  +++ +L SE    YV D   DG +   + E     +   I D  L 
Sbjct: 1   MRILLAEDETDLGLAVKQVLVSEK---YVVDWVIDGTQAWDYLESQWTDYTVAIFDWLLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LRV +   P+ +L+ +   E++V+GL +GADDY+ KPF  EEL+AR+RA+
Sbjct: 58  GLSGLELCQRLRVHQNPLPILMLTALGQSENRVKGLDAGADDYLVKPFVMEELLARLRAL 117

Query: 116 VRRSRGHAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            RRS       +  G  S++     L  K  EV    I LT KE+Q++  L   ++  + 
Sbjct: 118 QRRSPQLQPPSLTIGTFSLDYANNALCVKGSEVSPTVIPLTIKEFQILAYLMQNRDRIIP 177

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + L+D  +EP   ++   +  LR+KL+ + G    IET+ G+GY
Sbjct: 178 GSKIRHQLWDFNEEPISNVVAAQMRLLRRKLA-SYGCDCPIETIPGQGY 225


>gi|221068907|ref|ZP_03545012.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713930|gb|EED69298.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 235

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD A+A ++   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 9   MHVLLLEDDPAIARTVCYALEREGIAVTHSLLIADARQQWSRTTFDVLLMDVGLPDGNGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRS+
Sbjct: 69  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSK 128

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A    +   L ++   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 129 QFQPAAPAQLAKALQIDEQGQRALIHSRALDLTRREYQLLQSLVNAAGRILSRDALLEQI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  I  LR KL      +  I T  G GY L +
Sbjct: 189 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQ 233


>gi|238855538|ref|ZP_04645841.1| transcriptional activator protein CopR [Lactobacillus jensenii
           269-3]
 gi|282932316|ref|ZP_06337751.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|238831822|gb|EEQ24156.1| transcriptional activator protein CopR [Lactobacillus jensenii
           269-3]
 gi|281303537|gb|EFA95704.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
          Length = 223

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 121/201 (60%), Gaps = 2/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L H + + + S+ ++V  T  G++ +E+ +   +D +I D+ +    G 
Sbjct: 1   MRILLAEDEKQLNHVLTVAMTSQGYDVDSTFNGQEAVEMAQQKAYDVMIFDIMMPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ +R +   T + +L+  S I+DKV+GL  GADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TAVKEIRASGDKTYIVMLTAKSEIDDKVKGLDDGADDYLTKPFSLKELLARLRSKERRED 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +   +L ++++ + +  + + + L+ KE ++++ L L K+  L+ +   +H++ 
Sbjct: 121 NYNTKKMQLANLFLDVENQEISSR-NSVRLSTKETELLQYLLLNKDKFLSTQTIFSHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             +E E  I+ +++  LR+KL
Sbjct: 180 DSEENE-NIVWIYVSYLREKL 199


>gi|126728826|ref|ZP_01744641.1| two component response regulator [Sagittula stellata E-37]
 gi|126710756|gb|EBA09807.1| two component response regulator [Sagittula stellata E-37]
          Length = 249

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 115/224 (51%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MRI +IED++ALAH I   L+    +V   DL  DG E   F      D ++LDL L  +
Sbjct: 27  MRIAVIEDNEALAHGIAFRLRDRGHSV---DLLHDGTEADAFLAQEGADLVVLDLNLPGM 83

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLRALR     TPV +L+  S   ++V GL +GADDY++KPF  +EL AR+RA+ R
Sbjct: 84  DGLSVLRALRRRNDGTPVILLTARSETAERVAGLDAGADDYLTKPFEMDELEARLRAMAR 143

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      +    G L  +   + +      + +  +E   +E L  R+   ++K   ++H
Sbjct: 144 RKNIEFAARDKLGPLVFDRTGRQLMQDEQALDIPRREIATLECLLERRGRLVSKAQLISH 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +Y    + E   I+  + +LRK+L         I+T  G GY+L
Sbjct: 204 VYGIGSDAEDSAIEPHVSRLRKRLEPFG---IRIKTARGLGYML 244


>gi|332534928|ref|ZP_08410748.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035663|gb|EGI72153.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 234

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + +  +V   G++ +   K    + ++LD+ L    G  V
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSKVKTLNPNIVLLDIMLPGQDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +  ++P+ +L+      D+V GL+ GA DYI KP     L+ARI+A +R++   
Sbjct: 67  CRELR-SFYNSPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQNNEP 125

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +QS+I  G LS+N +++ V +    I+++  EY ++  L+      ++++     
Sbjct: 126 NKPQVSQSIIQVGALSINTESRNVTLNEQDINISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                YDG D    + +DV I  LRKK ++       I+T+WGRGY+L   A
Sbjct: 186 TKGREYDGLD----RSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLLVSTA 233


>gi|322377607|ref|ZP_08052097.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334]
 gi|321281372|gb|EFX58382.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 128/221 (57%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   I+ +L+ E + V + +  E+ I+LC F  FD I+LD+ +  + G E
Sbjct: 4   KILVVDDDLAILRLIKKVLEYEKYEVVIRNKIEE-IDLCDFTGFDLILLDI-MMPVSGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  +I+ P+C ++     ED V G+ +GADDYI KPF+ +EL+AR++  +RR   
Sbjct: 62  ICQMIR-EQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREER 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G+    I  G L +  D+K + V   +I LT +E+ ++  L+   +   + E   N+L
Sbjct: 121 IKGNVHQ-IKIGKLILYTDSKELFVNDDKIALTRREFDIVNFLASNPSKIYSIEEIYNYL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E  ++ +  +I ++R+KL       N I+T++G GY
Sbjct: 180 YPQSSEALLRSVSEYIYQIRQKLK--PYQLNPIKTLYGGGY 218


>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+ E F +     G  G+ L +   + AI+LD+ L    G+
Sbjct: 1   MRILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   LR     TP+ +L+      D+  GL  GADDY++KPF+   L+AR+RA+VRR  
Sbjct: 61  QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL +   A         + LT KE+ ++E L+ R    ++K   +  ++D
Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    +++V+I  LR+K+ +   G+  I T+ G GY+L  + 
Sbjct: 181 TAYDGGANLVEVYIRSLRRKI-DVPYGRQSIRTIRGAGYLLARDG 224


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE  G  I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 226


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++L L+   + V      ++  + C  + FD I+LD  L D  G +
Sbjct: 3   RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEA-DGCLEHGFDLILLDRNLPDGRGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR      P+  L+   +  D + G ++G DDYI+KPF+ E L  RI A++RRS  
Sbjct: 62  YCRELR-KSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +     GD+SV+ +   V +    I L+  EY+++ELL   K   LT++M +  
Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 178 LYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D  +   +   ++V I +LR+K+   AG   Y+ TV+G GY   E 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTFGET 228


>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 276

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED++ LA ++   L+ +   V V   G  G++L +   FDA++LD+ L  + GF
Sbjct: 1   MHVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
           E+ R LR      P+ IL+   ++ D+VRGL SGADDY+ KPF   EL AR+RA+  R  
Sbjct: 61  EICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRALGRRAP 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++  G +  +    TV V G  + L  +E  ++ELL        +++  L+ ++
Sbjct: 121 RPPDPPVVEVGPVRFHPATGTVTVAGRPVELRPRERALLELLLRNPGRLFSRDEILDRVW 180

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R+ P   ++DV +C+LR+KL  A+     IE+V G GY L
Sbjct: 181 GFDREPPASNVVDVHVCQLRRKLGPAS---RLIESVRGYGYRL 220


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K ++ D IILD+ +  + G + 
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  ELVARI++ +RR +  
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + QS+     I   +L +N+ +  V V G  I LT +E+ ++  L++ +   L+ +    
Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++         + V I KLR+K+        YI+TVWG GY
Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGY 227


>gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSK-PMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I   +L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|332187093|ref|ZP_08388833.1| response regulator [Sphingomonas sp. S17]
 gi|332012793|gb|EGI54858.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD   A +I   L++   ++ +   G + + L     FD  +LD  +    G 
Sbjct: 1   MRILLAEDDAVTAENIGAGLRAAGHHIRIASTGHEALTLLNAEPFDLAVLDRLMPQGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL A+R      PV +L+ + +IED+V GL+ GADDY+ KPF   EL ARI A+ RR  
Sbjct: 61  GVLAAIRQRDRHLPVLMLTALGAIEDRVEGLEEGADDYLVKPFALPELTARINALGRRRA 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++  G L+++L  + V      I +  +E++++E L   +   +T+ M L
Sbjct: 121 VAKEEDGPEVILRWGGLTLDLLDRQVRWHEAVILVQPREFRLLEELLRAQGRIVTRTMLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++    +P   I++  + +LR +L+  AG  + I TV G GY +R+ 
Sbjct: 181 ESVWKLHFDPRTNIVETHLSRLRTRLAE-AGCADAIVTVRGAGYRMRDG 228


>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
 gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
          Length = 225

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 222

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ +  + G++
Sbjct: 3   RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIMMPKMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  +  TPV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S ++ G   + LD  TV    H + L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IMTVRGLGY 218


>gi|239813055|ref|YP_002941965.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239799632|gb|ACS16699.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 229

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIP 58
           MRILL+EDD  L   +   L      V V+   ED   L +   FDA++LDL L  T  P
Sbjct: 1   MRILLVEDDAVLRDVMLRSLADAGHRVDVSTNIEDADHLWRVQPFDAVLLDLNLPATASP 60

Query: 59  ------GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
                 G   LR  R     TPV +L+     E+++ GL +GADDY+ KPF+  E+ AR+
Sbjct: 61  TSGLASGLNALRQARARGDRTPVLVLTARGRTEERIAGLDAGADDYLGKPFDLAEVEARL 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA+VRR++G  + +++ G L ++  A+        + L  +E++++  L      T++K 
Sbjct: 121 RALVRRAKG-TEDIVLLGQLKLDRKARRFSTASGPLDLPAREFEVLWELMSPPGRTVSKR 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + L    +      ++ FI +LRKKL+ +  G   I T+ G GY+L
Sbjct: 180 ALSDKLSSFDESLGDNALEAFISRLRKKLAGSGAG---IRTLRGIGYLL 225


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 119 --SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             + G   S +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++++   +   L+   + V   + G+  + + +   +D  +LD+ +  + G+E+
Sbjct: 8   ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV  LS   S  DKV GL+ GADDY++KPF   EL+AR+RA++RR +  
Sbjct: 68  CRNLRT-RTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A+ +    I  G ++++      E     I LT +E++++  L        ++E  L   
Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E K +D  I +LR KL+ A      IETV G GY  R
Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFR 230


>gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 216

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++   +L +N  A    V G++I LT KE++++  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL     G  YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKL-----GIPYIKTVKGIGY 212


>gi|220919853|ref|YP_002495156.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219952273|gb|ACL62664.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 231

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ LA  +   L +E + V       +G +  +   FDA+ILD+ L D  GFE
Sbjct: 4   RLLIIDDDRRLAAMVSEYLSAEGYAVASRFTAREGHDALRRERFDAVILDVMLPDCDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR R 
Sbjct: 64  LCRQIRTHS-GVPILMLTAKGDDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +L+  G L ++  ++ V + G    LT  ++ ++   +      L++E  ++ +  
Sbjct: 123 PQEAALLDFGRLQIDPSSRVVRLDGVERRLTSHQFDLLLAFATNAGRVLSRERLMDLVKG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   + IDV + +LR  + +       + T+ G GYV 
Sbjct: 183 EELDALDRSIDVHVSRLRAVIEDDPRHPRRLITIRGAGYVF 223


>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016]
 gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A   +  L+ E F V +   G  G+      +FD +ILD+ L  I G+ 
Sbjct: 3   KILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIMLPKINGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +LR+++  K   PV ++S      DK++G   GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 63  ILRSIQDKK-DIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 118 -RSRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +S+ + +   LI+ G L +  D++ V V G  I L  KE+ ++  ++   N    +E  
Sbjct: 122 IKSKFNLKHNKLIIRG-LEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNREEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++      +   + V I ++R+K+        YIETVWG GY LR
Sbjct: 181 FEKIWGLGSMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRLR 228


>gi|110800300|ref|YP_696779.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674947|gb|ABG83934.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 232

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|108800890|ref|YP_641087.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870030|ref|YP_939982.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436516|ref|YP_001072207.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771309|gb|ABG10031.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696119|gb|ABL93192.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126236316|gb|ABN99716.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 254

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 130/230 (56%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E +++     G   I L +    D ++LD+ L D+ G 
Sbjct: 29  VRVLVVDDEPVLAELVSMALRYEGWDIATAGDGATAIALARENPPDVVVLDVMLPDMSGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+ 
Sbjct: 89  DVLAKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 148

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G A+  IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+
Sbjct: 149 VSESGGAK--IVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNSKRVLSKAQILD 206

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++         I+++++  LRKK+   +G +  I T+ G GYVL+  A+
Sbjct: 207 RVWSYDFGGRSNIVELYVSYLRKKID--SGREPMIHTLRGAGYVLKPAAR 254


>gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 227

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 ANDSAAFGSLLIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 222

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ +  + G++
Sbjct: 3   RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +LR  +  TPV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S ++ G   + LD  TV    H + L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSSLMIGQTKLELDTYTVLQDQHSLILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IMTVRGLGY 218


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+L++ED++ +   I + LK   F V   + GE+ + + +  +  D ++LD+ L  I G+
Sbjct: 3   RVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGIDGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R    S  V +L+  S   DKV GL  GADDYI KPF+  EL+ARI AI+RR  
Sbjct: 63  KVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRIN 122

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++ +G   ++L++K    +   I LT  E+ +IEL    +   L++   L+
Sbjct: 123 NVNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      ++K++DV + ++R+K+ N +    YI TV G GY
Sbjct: 183 SVWGSDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGY 225


>gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 224

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 5/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +I+DDK +   +   ++ E +NV   D  ED +E     + D +ILD+ +  + G+E+
Sbjct: 5   IYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMDGYEL 64

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            + +R  KIS  P+ I+S      DK+ GL+ G+DDYI+KPF+  EL+AR++++ RR + 
Sbjct: 65  CKEIR--KISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKM 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S  I   D+ +  D + V   G  +  T  E+++I+ L+   N   T+E  L  ++ 
Sbjct: 123 PKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E + +D  + ++RKKL  + G +  I T+WG GY
Sbjct: 183 YDSFTETRAVDDMVKRVRKKLQ-SYGCEFNISTIWGYGY 220


>gi|239816306|ref|YP_002945216.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802883|gb|ACS19950.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 221

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L   +   L+     V   D G       +  + DA++LDLGL  + G 
Sbjct: 1   MRILLAEDEHTLGTWLCKALEHAGIQVEWVDDGRLADRALQQRDHDALVLDLGLPGMDGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      P  IL+   S+ ++V  L +GADD+++KPF   EL AR+ A+VRR+R
Sbjct: 61  TVLQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L+ +   +   + G  + L+ +E  ++  L  R    L+K+  L+ ++ 
Sbjct: 121 GVEHPRLACGPLAYDGARRQFVLGGEALALSPREQAVLRALVQRSGEPLSKQQILDRVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE  ++ ++V + +LRK+L    G    I T+ G GYVL
Sbjct: 181 DDDEVHLEAVEVLVYRLRKRLD---GSGVRIVTLRGLGYVL 218


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+  +   + L L+ E + +     G   +EL +  +       FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR    + P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   S   +  +    D+S+      V V+G  I+L+ KE++++EL         ++
Sbjct: 140 LLRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGY 247


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA  I   L+ E F + V   G  G++  +  + D I+LDL L  + G EV
Sbjct: 4   VLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ +    S P+ +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RRS 
Sbjct: 64  CRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRSS 123

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + I  G+L ++ +   V V G  + LT  EY+++  L+ R     ++E+ L ++
Sbjct: 124 EQTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  + +LR KL +A      I+TV G GY + E
Sbjct: 184 WGYSYVGDTRTVDTHLTRLRTKLGSAG---ELIKTVRGFGYKIEE 225


>gi|254822466|ref|ZP_05227467.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 234

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     GE  I   +    D ++LD+ L D+ G 
Sbjct: 9   INVLVVDDEPVLAEMVSMALRYEGWNISTAGDGESAIAAARNQRPDVVVLDVMLPDMSGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 69  DVLHKLRGEIPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           V      AQ  +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L
Sbjct: 129 VTTVDSGAQ--LVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         I++++I  LRKK+ N  G    I T+ G GYVL+
Sbjct: 187 DRVWSYDFGGRSNIVELYISYLRKKIDN--GRDPMIHTLRGAGYVLK 231


>gi|41406357|ref|NP_959193.1| hypothetical protein MAP0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118466148|ref|YP_879593.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|41394705|gb|AAS02576.1| hypothetical protein MAP_0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118167435|gb|ABK68332.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 246

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G 
Sbjct: 21  INVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 81  DVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 140

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           V      AQ  +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L
Sbjct: 141 VTTVDSGAQ--LVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQIL 198

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 199 DRVWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 243


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  L +  +  + LD +T +V   G  + L   E++++     +     ++E  L+ +
Sbjct: 129 PSSVGLTLEFE-DIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 187

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 188 W-GRDIYVDSRTVDVHVGRLRKALC-LHGGEDPVRTVRGAGYAL 229


>gi|119715846|ref|YP_922811.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536507|gb|ABL81124.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 232

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK LA ++   L+SE   V V   G DG        +DA+++D+ L  + G 
Sbjct: 1   MRILVVEDDKQLAAALRRGLESEGHAVDVALTGTDGEWYASENTYDAMVVDVMLPGLTGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +    R +   TP+ +L+  S  E + R L +GADD++SKPF+   L AR+RA++RR  
Sbjct: 61  ALCARRRESGDWTPILMLTARSGPEQEARALDAGADDFLSKPFSFMVLTARLRALLRRDS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++     V      I LT K++ ++E +    +  L+K M L H++D
Sbjct: 121 RERPTVLEVGDLRLDPALHRVWRGDTSIDLTPKQFSLLEFMMRHADHILSKSMILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    I++V++ +LR+++ +    ++ ++TV   GY
Sbjct: 181 FSYDGHPNIVEVYVRQLRQRI-DEPFQRSSLQTVRLVGY 218


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V   +I LT KE+ ++ LL+       + E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 127/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 130/230 (56%), Gaps = 14/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           M+IL+++D++ +A  I+  L+ E F    T++  +G+E+    E    D IILDL L  I
Sbjct: 1   MKILIVDDEEDIAGLIQFHLEEEGFQ---TEVCHNGMEVLPRLEKNLPDGIILDLMLPGI 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++ + ++      P+ +++  +   D V GL+ GADDYI KPFN  ELVAR+R++ R
Sbjct: 58  GGMDLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTR 117

Query: 118 RSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+   +Q +   I TG + +N  A  V V+G  I LT  E+++++L +       +++  
Sbjct: 118 RTTDPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKL 177

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++ G+D     + +DV I +LR KL +    K  +ET+ G GY  R+
Sbjct: 178 LDRIW-GKDVFVTDRTVDVNIKRLRDKLLSE---KERLETIRGVGYRFRD 223


>gi|109453320|gb|ABG34140.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453322|gb|ABG34141.1| PhoP [Salmonella enterica subsp. diarizonae]
 gi|109453326|gb|ABG34143.1| PhoP [Salmonella enterica subsp. diarizonae]
          Length = 213

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/217 (34%), Positives = 117/217 (53%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L   +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRLLLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + +   L+   + V     G + +      EFD I+LDL L  + G E
Sbjct: 3   KILVVEDDLNINNMLREALEEAGYEVVQAYSGTEAMLNVGMTEFDLILLDLMLPGMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L+     K  TPV +LS    ++ KV  L  GADDYI+KPF  +EL+ RI   +RR   
Sbjct: 63  FLKLFN-KKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S+      +   DL +N  +  V + G+ I LT +EY+++ELL L  N   +K+  
Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            N+ ++     E K I+V I  +R KL       +YI+TVWG G+ L
Sbjct: 182 YNYAWEEYFIGEDKTINVHISNIRMKLKKVTED-DYIDTVWGIGFKL 227


>gi|73541975|ref|YP_296495.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72119388|gb|AAZ61651.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 231

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +   +   L++E   V   D  + G+      + D +ILDLGL D  G ++
Sbjct: 9   VLLVEDEPHIRRFVRAALQAEGCTVREADSLKRGLIEAGTRQPDLVILDLGLPDGDGVDL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
           +R +R      PV +LS  S+ EDK+  L +GADDY++KPF   ELVAR+R ++R   RS
Sbjct: 69  IREVRTWT-EVPVLVLSARSAEEDKIGALDAGADDYLTKPFGVGELVARLRVLLRRHARS 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  + I  G++ V+L  + V   G  +HLT  EY+++ +L   +   +T    L  ++
Sbjct: 128 NPHGSAQIAFGEVQVDLANRMVTRAGEPVHLTPIEYRLLSVLIAHRGKVMTHRELLREVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + + V++  LR KL        ++ T  G GY
Sbjct: 188 GPSHSESSQYLRVYMGHLRHKLEADPAQPAHLLTEVGVGY 227


>gi|300789808|ref|YP_003770099.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799322|gb|ADJ49697.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 6   RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 66  VCKAIR-AESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V  +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 125 EPAESLTIGDLAIDVPGHEVTREGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGY 222


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 119/219 (54%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I +ML+SE++  +    G   +   +      ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLMLPGLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R +R A+   PV +L+  +  +D V GL++GADDY++KPF  +EL+AR+R  +RR + 
Sbjct: 64  ICRLIR-AESDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGTE 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GD+ +++    V   G  + LT  E+ ++  L+   +   T+E  L  ++ 
Sbjct: 123 AGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   + ++++V + +LR K+         + TV G GY
Sbjct: 183 HQHAADTRLVNVHVQRLRSKVEKDPEHPTIVVTVRGVGY 221


>gi|209963769|ref|YP_002296684.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum
           centenum SW]
 gi|209957235|gb|ACI97871.1| KDP operon transcriptional regulatory protein KdpE [Rhodospirillum
           centenum SW]
          Length = 227

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L +    V   + G + + L +    D +ILDLGL D+ G E
Sbjct: 3   RILVVDDEAQIRRFLRISLAANGHAVLEAETGAEAVALVRAEAPDLVILDLGLPDMDGQE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V+ A+R + ++  P+ +LS  +   DKV  L  GA+DY++KPF   EL+AR+R  +RR+ 
Sbjct: 63  VVSAIREIGRV--PILVLSVRTGETDKVEALDRGAEDYVAKPFGIAELMARVRVALRRAP 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + +++V G + ++LD + VE  G  + L+ +E  ++ +L+   +  LT +  L  ++
Sbjct: 121 QDPRPAVVVAGGVMIDLDRRVVERDGGEVRLSRREQDLLFVLARSADHVLTHQQILREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +   + V++ +LR+KL    G    I T  G GY LR +
Sbjct: 181 GPAHVEDTAYLRVYVNQLRQKLEPDPGQPALIVTEPGVGYRLRTD 225


>gi|148269933|ref|YP_001244393.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288618|ref|YP_001738856.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735477|gb|ABQ46817.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176121|gb|ACB09173.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 220

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 123/220 (55%), Gaps = 10/220 (4%)

Query: 3   ILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           I +++DDK +  ++ E + +      ++T  GED +   +   F  ++LD+ L D  G+E
Sbjct: 5   IAVVDDDKNILKTVSEKLQQLGQVKTFLT--GEDFLNDEEV--FHVVVLDVMLPDYSGYE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R ++  +  T V +L+ +S  E  ++G ++GADDY++KPFN E L+ R++  + R + 
Sbjct: 61  ICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLVRVKRFLEREK- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L   GDL ++    TV ++G RIHL  KE++++  L+      +T+E  L   ++ 
Sbjct: 120 --KGLYDFGDLKIDASGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFWED 177

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              P  +++D  I ++RK + +      YI+T+WG GY+ 
Sbjct: 178 PVSP--RVVDTVIKRIRKAIEDDPNRPRYIKTIWGVGYMF 215


>gi|325292356|ref|YP_004278220.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060209|gb|ADY63900.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 252

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREVGIVADHASDGESGLFMGCENSYDVMVIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+ARI  + RR  
Sbjct: 88  SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 148 KPEQDMVYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      K  ++T+ G GY++++  
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDF-EKPLLKTIRGAGYMMKDEG 252


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++   ++  L  E F V     GE+ +++ +    D +ILD+ +  + G E
Sbjct: 3   RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A    PV  L+   +  D+VRGL++GADDY+ KPF  E LVAR+RA++RR + 
Sbjct: 63  VLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL ++    T       IHLT  E++++    L     L K+  L  ++  
Sbjct: 123 ERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  +++V++ +LR+KL  A G    I TV G GYVLRE 
Sbjct: 183 DFGGNANVLEVYVKQLRQKL-EAEGEPRLIHTVRGVGYVLREG 224


>gi|311899558|dbj|BAJ31966.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 245

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA------IILDLGLT 55
           R+L+++DD A+  S+E  L+   F V V     DG +       DA      ++LD+G+ 
Sbjct: 4   RVLVVDDDAAIRRSLERGLRLSGFRVEVA---ADGAQALSRLAGDAPDPPDVLVLDVGMP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +V R LR     TPV +LS +  + D+V GLQ+GADDY+ KPF  EELV R+ A+
Sbjct: 61  GLSGTDVCRTLRARADDTPVLMLSALDELADRVAGLQAGADDYLVKPFALEELVLRLHAL 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR       LI  G L ++ + +    +   + LT +E++++  L+      L++E+ L
Sbjct: 121 LRRRPPQPTDLIRVGPLRIHPETRQAFWEEDELRLTRREFELLAQLARNAGLVLSREVLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + ++    E     +D F+  LR+KL  A G    + TV G G+VLR    D T
Sbjct: 181 DRVWGYDFEVRSDAVDTFVSYLRRKL-EAGGRPRTVHTVRGVGFVLRAPNTDST 233


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +E+ L +E + V     G + +++    E D +ILD+ +  + G EV
Sbjct: 6   VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R +K + P+ +LS  S   DK+ GL +GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 66  CMRMRKSK-NMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYKRL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   Q +I   DL +N     V+V    + LT +E++++ELLS  +    + E    
Sbjct: 125 NVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++          + V I K+R+K+        +I+T+WG GY
Sbjct: 185 SVWKQDFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGY 227


>gi|254773313|ref|ZP_05214829.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G 
Sbjct: 9   INVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 69  DVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           V      AQ  +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L
Sbjct: 129 VTTVDSGAQ--LVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 187 DRVWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 231


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE  G  I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 226


>gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
 gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RRS
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRSLQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-AKPLLHTVHGVGYRLAEG 223


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ +  I GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R A+ S P+ +L+  SS  DKV GL++GADDY+SKPF  +EL+AR+RA++RRS+ 
Sbjct: 65  LCRLIR-AESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 -HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++Q+ I      GDL + ++   V   G  +  + KE+ +   L   +    ++E  L 
Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P   + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVW-GYDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFEE 230


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I   L++  + V V + GE  ++ C+    D IILD+ L  I G EV
Sbjct: 6   ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLEV 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  VA    P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A++RR+ 
Sbjct: 66  CKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRRTE 125

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     +I  G L+++     V   G+++  T KE+++++LL L +   L+++  L+ +
Sbjct: 126 NNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I  +R+KL +      YIET+ G GY
Sbjct: 186 WGYEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGY 226


>gi|325957156|ref|YP_004292568.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
 gi|325333721|gb|ADZ07629.1| DNA-binding response regulator [Lactobacillus acidophilus 30SC]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + I  +EDD+++       L++ NF     + G    +  K  + D +ILDL L D  G 
Sbjct: 2   LEIWCVEDDESIREIEMYTLQTMNFKTRSFENGTSFFKALKEKKPDLVILDLMLPDEDGS 61

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++LR +R   A    PV I S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR
Sbjct: 62  DILRRIRGNSATKELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRR 121

Query: 119 S-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + R   +  I    + + L    V V G  I LT KEY +++LL     T  ++E  ++ 
Sbjct: 122 TQRREEKDRIERDGVKILLKRHEVLVNGEEIELTLKEYGLLKLLITHPETVFSREEIMDQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     E + +DV +  LR+KLS A     +IETV G GY   E
Sbjct: 182 IWETGFYGETRTVDVHVRTLRQKLSEAG---KHIETVRGVGYRYHE 224


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 10/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I L L+ + F V     G + +E  +    D ++LD+ L D+ GFEV
Sbjct: 10  ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ +R +  +TPV +L+     +D+VRGL+ GADDYI+KPF+  ELV+R++A++RR    
Sbjct: 70  LKLIRESS-NTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVEAT 128

Query: 122 --HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A++ I+  D  L ++   + V V+G+ + L   EY+++  L       +T E  L  
Sbjct: 129 SLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLLTK 188

Query: 178 L--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  Y+ RDE     + +++  LR+K+        YI T  G GY
Sbjct: 189 VWGYEYRDEEH--YVRLYVNYLRQKIEEDPSNPKYILTERGVGY 230


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   IE  K +  + ++LD+ L    G++
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPGADGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS      DKV GL+ GADDYI KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRQVS-NIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEH 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +V  +L +N    T++V G  + +  KE +++  L+   N   T++  L  ++
Sbjct: 125 KEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
                 + + +DV I +LR+K+ +    +N+ ++TVWG GY
Sbjct: 185 GFDFYGDSRTVDVHIKRLREKIESE--DQNWQVKTVWGVGY 223


>gi|257871018|ref|ZP_05650671.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
 gi|257805182|gb|EEV34004.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
          Length = 235

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           +RIL++ED+++LA  I+  L  E ++   T   +DG E    +      FD I+LD  L 
Sbjct: 3   LRILIVEDEESLASFIQTELTFEGYD---TVWAKDGQEALTLFNQQTDLFDLILLDWMLP 59

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G  V R +R  +   P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I
Sbjct: 60  IYDGITVARRIR-KESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVI 118

Query: 116 VRRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            RR +  A      Q+ +V G+L +++    V+V G  I LT KE+ ++  L        
Sbjct: 119 ERRLQREAQQQKNQQNQLVVGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVK 178

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T++  LN ++    + +  ++DV+I  LR KL     GK  I TV G GYVLR
Sbjct: 179 TRDELLNEIWGYEYDGQTNVVDVYIRTLRNKLDVCGKGK-MIATVRGLGYVLR 230


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+  ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+  S     V GL  GADDYI+KPF   EL+ARIR  +R+S G
Sbjct: 63  VCTEIKETQ-DLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + S      L V++ +  V+  G  + L+  EY+++ +        +T+   L+ L+D 
Sbjct: 121 RSPSAFEICGLHVDMASGIVKKDGSEVFLSALEYRLLLVFINNPKNIITRSRLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E      + V+I +LR+K+ N       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 123/220 (55%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-KESEVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +N++   
Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 10/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD +LA  I   L    + V V   G+  +E+      D ++LD+ +    GF+V
Sbjct: 7   ILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADETPDLVLLDVMMPVKNGFDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R A  + P+  ++      D++RGL +GADDY++KP   + L+ARI+A++RR    
Sbjct: 67  CKEAR-AFYAGPILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALLRRVGDE 125

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178
            Q L +V   L +N  AK+V +    + L   E+ ++ LL+L+  T +++   +  L   
Sbjct: 126 EQKLQLVFDSLVLNATAKSVTIDKQPLDLNANEFDVLWLLALKAGTIVSRNELVAQLRGI 185

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            YDG D    + ID+ I +LRKKL +A      ++T+ G+GY+ 
Sbjct: 186 EYDGLD----RSIDIRISRLRKKLQDALSQPYKVKTIRGKGYLF 225


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ALA  +   L +E ++V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S+++ GD+ ++ + + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYAL 225


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D++ L    +L LKS+ +   + + GE  + L +    D I+LD+ +  + G EV
Sbjct: 4   IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +++S PV  LS   S  DKV   + GADDY++KPF+ EEL ARI+A +R    +
Sbjct: 64  CREIR-SQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAMN 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             S    +  G L ++ +A   EV+G  I LT KE +++   +   N   T E   + ++
Sbjct: 123 PSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      V+ + V I  LR+K+        YI+TV G GY
Sbjct: 183 NLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGY 222


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   D G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233


>gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 217

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 9/219 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   ++L L            G+  I   +   +D IILD+ L ++ GFEV
Sbjct: 4   ILIVEDEVAINDLVKLNLHLVGHQCTSVFEGKSAIFAIQRESYDLIILDIMLPELDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +      TP   L+  +S++ +++G   GADDYI+KPF   EL+AR+ AI+RR++  
Sbjct: 64  IKQVN----QTPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQ-K 118

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A       ++ ++ D+  V   G  +  T KEY ++E+L   +N  L++E  L  ++   
Sbjct: 119 ASKYFEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWGYD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E + + +DV I KLRKKLS     +  I+TV+  GY L
Sbjct: 179 FEGDTRTVDVHIQKLRKKLS----WEGVIKTVYKLGYRL 213


>gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
 gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   L +E +   V   G   ++     + D +I+D+ L  + G E 
Sbjct: 1   MLVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQASTTLKPDLVIMDVMLPVMDGLEA 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + + VA    PV +L+      DK+ GL +GADDY++KPF+  ELVAR +A++RR    
Sbjct: 61  TKRI-VAMRPVPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   + V + G  +HLT  E+ ++  L+ +  + LT+E  
Sbjct: 120 KVIAQNSQNEKILDYGSLVIDPTQRVVTLNGESVHLTPTEFDLLVTLARKPKSVLTREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  +  LR KL     G + I TV G GY     A+
Sbjct: 180 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSSTIRTVHGVGYAFEPPAQ 226


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V     GE+ + +      D I+LD  L ++ G EV
Sbjct: 8   VLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +  R      PV +LS  S   D++RGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRAR 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  L +  +  + LDA+T  V   G  + L   E++++     +     ++E  L+ +
Sbjct: 128 PAAAGLRLEYE-DIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 187 W-GRDIYVDTRTVDVHIGRLRKAL-GVHGGGDPLRTVRGAGYAL 228


>gi|255746171|ref|ZP_05420118.1| DNA-binding response regulator [Vibrio cholera CIRS 101]
 gi|262168929|ref|ZP_06036623.1| DNA-binding response regulator [Vibrio cholerae RC27]
 gi|255735925|gb|EET91323.1| DNA-binding response regulator [Vibrio cholera CIRS 101]
 gi|262022628|gb|EEY41335.1| DNA-binding response regulator [Vibrio cholerae RC27]
          Length = 203

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +++ L  + + V   + G   +   K  +F A+ILDL L D+ G EVLR +R A  + PV
Sbjct: 1   MQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGLEVLRQIRRAGYTLPV 60

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVN 135
            IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS G A+ LI  G+L ++
Sbjct: 61  MILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSSGSAEELISVGELDLS 120

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
           L  + +      + LT  EY+++  L  +    ++KE+    L+   +      I+V I 
Sbjct: 121 LSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHGWDEGSSDNAIEVHIH 180

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVL 221
            LRKKL +     N ++ V G GY++
Sbjct: 181 NLRKKLPD-----NLVKNVRGVGYMI 201


>gi|323144112|ref|ZP_08078752.1| transcriptional regulatory protein QseB [Succinatimonas hippei YIT
           12066]
 gi|322416127|gb|EFY06821.1| transcriptional regulatory protein QseB [Succinatimonas hippei YIT
           12066]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 132/232 (56%), Gaps = 12/232 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  +++  L+S+++ V     G   +   +  ++D I+LDLGL  + G 
Sbjct: 1   MRILLVEDDRMIGQAVKEGLESKSYAVDWFQDGNTALYAPEDVDYDCILLDLGLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R  KI +PV +L+   +I D+V GL  GADDY+ KPF+  EL+ARIRA++RRS 
Sbjct: 61  SLLGKWRAQKIKSPVIVLTARDAIADRVSGLDKGADDYLVKPFDFTELLARIRAVLRRST 120

Query: 121 GHAQ---SLIVTGDLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           G+++   +++  G L+++    L     E +   + LT +E+ ++E L  R    L++E 
Sbjct: 121 GNSEKIDNILTNGALTLDPVEHLLTVKEENESREVSLTSREFSLLEALMQRPGAVLSREA 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +Y   +E E   ++  I  LRKK+     G ++I+ V G G+ + + A
Sbjct: 181 LEQRIYSYDEEVESNAVEFIIHSLRKKI-----GASHIKNVRGVGWKVAKEA 227


>gi|283455806|ref|YP_003360370.1| response regulator of two-component system [Bifidobacterium dentium
           Bd1]
 gi|283102440|gb|ADB09546.1| Response regulator of two-component system [Bifidobacterium dentium
           Bd1]
          Length = 224

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 14/225 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            + VA+   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RI-VAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D  D    + +D  +  LR KL     G   I TV G GY  
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAF 219


>gi|260778106|ref|ZP_05886999.1| response regulator receiver domain protein (CheY-like) [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606119|gb|EEX32404.1| response regulator receiver domain protein (CheY-like) [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LLIEDD+ LA +I   ++ + F       G  G+ L    ++D I+ D+ +  + G +V 
Sbjct: 6   LLIEDDRDLAEAISDYMELDGFEFDFAYNGAAGLNLALTNQYDIILTDINMPKMDGIDVC 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           ++LR   +STPV +L+   +++DKV G  +G+DDY+ KPF  EEL  R++A++RRS+G  
Sbjct: 66  QSLREQGVSTPVLMLTARDTLDDKVTGFAAGSDDYLVKPFAMEELKIRLQALIRRSQGTV 125

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             L V GDLS++LD       G  + L    ++M+  L +R +  +  +  L     G +
Sbjct: 126 TYLKV-GDLSIDLDKHQATRAGQTLKLPPVCWKMLVCL-MRNSPNVVSKTKLEEEVWGDE 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            P      V + KLR+ + +A      + TV G G  +RE
Sbjct: 184 LPSPDSFKVHLFKLRQAI-DAPFESKLVHTVHGVGVTIRE 222


>gi|256820277|ref|YP_003141556.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
 gi|256581860|gb|ACU92995.1| two component transcriptional regulator, winged helix family
           [Capnocytophaga ochracea DSM 7271]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K L  ++   L+ E+F V        G+     Y++D I+LD+ L +  G 
Sbjct: 1   MKILIIEDEKELRLTLRQFLEQEHFLVETAKDYPSGLAKLADYDYDCILLDIMLPNGSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR  K +  V I+S   S+EDKV GL+ GADDY++KPF+  EL+AR+++I+RR  
Sbjct: 61  QLLDELRAMKKNHSVLIISAKDSVEDKVLGLEKGADDYLAKPFHLAELLARVKSIIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-----KNTTLTKEMFL 175
              + +I   ++    + +TV+V    + L  KEY ++    +R     + TTL + ++ 
Sbjct: 121 QQGEEVITLKNVQFFPETRTVKVGDTTLTLNRKEYDLLYYFIIRPERLVEKTTLAEAVWG 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ D  D   +  I   I  LRKKL  A    + ++ V+G GY L
Sbjct: 181 DYI-DQVD--SLDFIYSQIKNLRKKLKTAEAEID-LQAVYGIGYKL 222


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 123/225 (54%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   + + G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +ALR ++   PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKALR-SRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              L      +  G + ++++   V+V G+ + L  KE+ ++E L       LT+   ++
Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV + +LR K+ +      ++ TV G GY L
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKL 227


>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
 gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ASDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+         I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEEIPSSPTLIRTVRGVGYRL 221


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|290474125|ref|YP_003467002.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289173435|emb|CBJ80212.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 221

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 3/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+K +   + L L+ EN+ V+  D  + G+      + D +ILDLGL D  G +++
Sbjct: 1   MIVEDEKEIRRFVRLALEGENWRVFECDTLKRGLIEAATRKPDLLILDLGLPDGNGIDLI 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             +R    S P+ +LS  ++ +DKV  L SGADDY+SKPF   EL+AR+R  +RR+    
Sbjct: 61  HDIRQWS-SIPIIVLSARNNEQDKVAALDSGADDYLSKPFGINELLARVRVALRRATKAN 119

Query: 124 Q--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           Q   +I   D+SV+L  + V      +HLT  EY+++  L       LT+   LNH++  
Sbjct: 120 QPDPMIHFADISVDLINRRVLKSQKELHLTPTEYRLLTELLTNSGKVLTQRYLLNHVWGP 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL        ++ T  G GY
Sbjct: 180 HYIEHNHYLRIYMGHLRQKLEEDPARPKHLLTETGVGY 217


>gi|295689255|ref|YP_003592948.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431158|gb|ADG10330.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   +   L +  +     D G++G+     +  DA++LDLGL D+ G E
Sbjct: 7   RILVIDDEPQIHRFLGPALDAAGYEALRADSGQEGLRGIALWSPDAVVLDLGLPDMDGKE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   R A    P+ ILS      +K+  L  GA+DY+ KPF   EL+AR+R  +R+S G
Sbjct: 67  VLEKAR-AFYEGPILILSARDREVEKIEALDRGANDYVEKPFGVGELLARLRVALRQSMG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +  GD+ ++LD + V  +GH  + L+ KE++++  L+L +   LT +  L  +
Sbjct: 126 PKRPAGPLSLGDVVIDLDRRLV-TKGHAAVKLSPKEFELLSRLALSQGKVLTHKELLVSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + + VF+ +LR+KL +  G    I T  G GY L
Sbjct: 185 WGAAHAEDTQYLRVFVGQLRQKLEDDPGRPALILTEPGVGYRL 227


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E  +   +D I LD+ +  + GF+
Sbjct: 20  RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R AK   P+ I++     +D V+G + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 80  ACERIR-AKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  G+L ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E  ++DV + +LR+K+         I TV G GY L
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKL 242


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +    +   L++E F V     GE+ + +    E D I+LD  L ++ G EV
Sbjct: 8   VLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +  R      PV +LS  S   D+VRGL++GADDY+ KP++  EL+AR++A +RR+R
Sbjct: 68  CRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRAR 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  L +  D  + LDA+T  V   G  + L   E++++     +     ++E  L+ +
Sbjct: 128 PAAAGLRLEYD-DIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 187 W-GRDIYVDTRTVDVHIGRLRKALGIYGGG-DPLRTVRGAGYAL 228


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILLIED++     +   L    + V Y  D G DG+ L     +  IILD+ L  + G
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACD-GRDGLHLALQEHYSLIILDIMLPGLDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++VLRALR A  S  +C L+   S+ED+V+GL++GA+DY+ KPF+  EL+ R+RA +R+ 
Sbjct: 82  WQVLRALRTAHQSPFIC-LTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQH 140

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++
Sbjct: 141 VPVFTRLTING-LDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 200 GINFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQ 241


>gi|55822861|ref|YP_141302.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|116627727|ref|YP_820346.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|55738846|gb|AAV62487.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus CNRZ1066]
 gi|116101004|gb|ABJ66150.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278275|gb|ADQ62932.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus ND03]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVY----VTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           RIL+I+D K +   +   L+ +N NV     V DL ++ +       FD I+LD+ + D+
Sbjct: 3   RILVIDDQKDIVQLVVKALELQNHNVTGLTSVLDLDKNSLP-----RFDLILLDIMMPDV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +    +R  ++  P+  ++  +   D V+GL  GADDYI KPF  +EL AR+ A +R
Sbjct: 58  DGLQFCHEIR-NQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGVKELQARVAAHLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        +  G+   +L A+ + ++   + LT  EY + + L+  K    +KE    H
Sbjct: 117 REHRERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTH 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   D+     +   I  +R KL     G+N IETVWG GY
Sbjct: 177 LYGYEDKGSPAAVAEHIKNIRAKLKEV--GQNPIETVWGIGY 216


>gi|15804502|ref|NP_290542.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 EDL933]
 gi|15834092|ref|NP_312865.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16131752|ref|NP_418348.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. MG1655]
 gi|24115208|ref|NP_709718.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a
           str. 301]
 gi|30064793|ref|NP_838964.1| DNA-binding transcriptional regulator CpxR [Shigella flexneri 2a
           str. 2457T]
 gi|74314413|ref|YP_312832.1| DNA-binding transcriptional regulator CpxR [Shigella sonnei Ss046]
 gi|82546262|ref|YP_410209.1| DNA-binding transcriptional regulator CpxR [Shigella boydii Sb227]
 gi|82778920|ref|YP_405269.1| DNA-binding transcriptional regulator CpxR [Shigella dysenteriae
           Sd197]
 gi|89110116|ref|AP_003896.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. W3110]
 gi|157158151|ref|YP_001465405.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           E24377A]
 gi|157163386|ref|YP_001460704.1| DNA-binding transcriptional regulator CpxR [Escherichia coli HS]
 gi|168748793|ref|ZP_02773815.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4113]
 gi|168755594|ref|ZP_02780601.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4401]
 gi|168761707|ref|ZP_02786714.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4501]
 gi|168768212|ref|ZP_02793219.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4486]
 gi|168775255|ref|ZP_02800262.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4196]
 gi|168780827|ref|ZP_02805834.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786766|ref|ZP_02811773.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC869]
 gi|168799510|ref|ZP_02824517.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC508]
 gi|170022076|ref|YP_001727030.1| DNA-binding transcriptional regulator CpxR [Escherichia coli ATCC
           8739]
 gi|170083383|ref|YP_001732703.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683339|ref|YP_001746250.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           SMS-3-5]
 gi|187731406|ref|YP_001882606.1| DNA-binding transcriptional regulator CpxR [Shigella boydii CDC
           3083-94]
 gi|188492588|ref|ZP_02999858.1| transcriptional regulatory protein CpxR [Escherichia coli 53638]
 gi|191166417|ref|ZP_03028248.1| transcriptional regulatory protein CpxR [Escherichia coli B7A]
 gi|193063906|ref|ZP_03044992.1| transcriptional regulatory protein CpxR [Escherichia coli E22]
 gi|193068055|ref|ZP_03049020.1| transcriptional regulatory protein CpxR [Escherichia coli E110019]
 gi|194427424|ref|ZP_03059973.1| transcriptional regulatory protein CpxR [Escherichia coli B171]
 gi|194433236|ref|ZP_03065517.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012]
 gi|194438327|ref|ZP_03070418.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1]
 gi|195937554|ref|ZP_03082936.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807964|ref|ZP_03250301.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4206]
 gi|208814318|ref|ZP_03255647.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4045]
 gi|208820163|ref|ZP_03260483.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4042]
 gi|209397017|ref|YP_002273430.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4115]
 gi|209921392|ref|YP_002295476.1| DNA-binding transcriptional regulator CpxR [Escherichia coli SE11]
 gi|217324624|ref|ZP_03440708.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. TW14588]
 gi|218556475|ref|YP_002389389.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI1]
 gi|218697627|ref|YP_002405294.1| DNA-binding transcriptional regulator CpxR [Escherichia coli 55989]
 gi|218701384|ref|YP_002409013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli IAI39]
 gi|218707537|ref|YP_002415056.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           UMN026]
 gi|238902979|ref|YP_002928775.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BW2952]
 gi|253775448|ref|YP_003038279.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254039129|ref|ZP_04873179.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43]
 gi|254163863|ref|YP_003046971.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B str.
           REL606]
 gi|254795912|ref|YP_003080749.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256021558|ref|ZP_05435423.1| DNA-binding transcriptional regulator CpxR [Shigella sp. D9]
 gi|256026049|ref|ZP_05439914.1| DNA-binding transcriptional regulator CpxR [Escherichia sp.
           4_1_40B]
 gi|260846667|ref|YP_003224445.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O103:H2 str. 12009]
 gi|260857686|ref|YP_003231577.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O26:H11 str. 11368]
 gi|260870632|ref|YP_003237034.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O111:H- str. 11128]
 gi|261223545|ref|ZP_05937826.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257307|ref|ZP_05949840.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O157:H7 str. FRIK966]
 gi|291285325|ref|YP_003502143.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O55:H7 str. CB9615]
 gi|293407532|ref|ZP_06651451.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1412]
 gi|293413352|ref|ZP_06656013.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354]
 gi|293417376|ref|ZP_06660000.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185]
 gi|293470226|ref|ZP_06664637.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088]
 gi|297519848|ref|ZP_06938234.1| DNA-binding transcriptional regulator CpxR [Escherichia coli OP50]
 gi|298383280|ref|ZP_06992873.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1302]
 gi|300819884|ref|ZP_07100068.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300823743|ref|ZP_07103869.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300896397|ref|ZP_07114930.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906239|ref|ZP_07123949.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300919108|ref|ZP_07135647.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300922910|ref|ZP_07138986.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300931647|ref|ZP_07146956.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300938408|ref|ZP_07153153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300947233|ref|ZP_07161440.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954639|ref|ZP_07167082.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|301022754|ref|ZP_07186599.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301023973|ref|ZP_07187696.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301303390|ref|ZP_07209514.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301328243|ref|ZP_07221365.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301645100|ref|ZP_07245060.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140611|ref|ZP_07499967.1| DNA-binding transcriptional regulator CpxR [Escherichia coli H736]
 gi|307313960|ref|ZP_07593574.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309783839|ref|ZP_07678484.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617]
 gi|309796625|ref|ZP_07691031.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312971799|ref|ZP_07785973.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70]
 gi|331644650|ref|ZP_08345769.1| transcriptional regulatory protein CpxR [Escherichia coli H736]
 gi|331655608|ref|ZP_08356600.1| transcriptional regulatory protein CpxR [Escherichia coli M718]
 gi|331665566|ref|ZP_08366464.1| transcriptional regulatory protein CpxR [Escherichia coli TA143]
 gi|331670765|ref|ZP_08371601.1| transcriptional regulatory protein CpxR [Escherichia coli TA271]
 gi|331675368|ref|ZP_08376118.1| transcriptional regulatory protein CpxR [Escherichia coli TA280]
 gi|331680029|ref|ZP_08380691.1| transcriptional regulatory protein CpxR [Escherichia coli H591]
 gi|332282797|ref|ZP_08395210.1| transcriptional regulatory protein CpxR [Shigella sp. D9]
 gi|83287786|sp|P0AE89|CPXR_ECO57 RecName: Full=Transcriptional regulatory protein CpxR
 gi|83287787|sp|P0AE88|CPXR_ECOLI RecName: Full=Transcriptional regulatory protein CpxR
 gi|83287788|sp|P0AE90|CPXR_SHIFL RecName: Full=Transcriptional regulatory protein CpxR
 gi|12518811|gb|AAG59106.1|AE005622_8 transcriptional regulator in 2-component system [Escherichia coli
           O157:H7 str. EDL933]
 gi|410157|gb|AAC36868.1| transcription factor [Escherichia coli]
 gi|2367329|gb|AAC76894.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. MG1655]
 gi|13364314|dbj|BAB38261.1| transcriptional regulator in 2-component system CpxR [Escherichia
           coli O157:H7 str. Sakai]
 gi|24054492|gb|AAN45425.1| transcriptional regulator in 2-component system [Shigella flexneri
           2a str. 301]
 gi|30043053|gb|AAP18775.1| transcriptional regulator in 2-component system [Shigella flexneri
           2a str. 2457T]
 gi|41386674|dbj|BAD08346.1| regulator of two component system [Shigella sonnei]
 gi|73857890|gb|AAZ90597.1| transcriptional regulator in 2-component system [Shigella sonnei
           Ss046]
 gi|81243068|gb|ABB63778.1| transcriptional regulator in 2-component system [Shigella
           dysenteriae Sd197]
 gi|81247673|gb|ABB68381.1| transcriptional regulator in 2-component system [Shigella boydii
           Sb227]
 gi|85676147|dbj|BAE77397.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K12 substr. W3110]
 gi|157069066|gb|ABV08321.1| transcriptional regulatory protein CpxR [Escherichia coli HS]
 gi|157080181|gb|ABV19889.1| transcriptional regulatory protein CpxR [Escherichia coli E24377A]
 gi|169757004|gb|ACA79703.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169891218|gb|ACB04925.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521057|gb|ACB19235.1| transcriptional regulatory protein CpxR [Escherichia coli SMS-3-5]
 gi|187428398|gb|ACD07672.1| transcriptional regulatory protein CpxR [Shigella boydii CDC
           3083-94]
 gi|187769203|gb|EDU33047.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4196]
 gi|188016800|gb|EDU54922.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4113]
 gi|188487787|gb|EDU62890.1| transcriptional regulatory protein CpxR [Escherichia coli 53638]
 gi|189001521|gb|EDU70507.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4076]
 gi|189357188|gb|EDU75607.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4401]
 gi|189362610|gb|EDU81029.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4486]
 gi|189367865|gb|EDU86281.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373281|gb|EDU91697.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC869]
 gi|189378053|gb|EDU96469.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC508]
 gi|190903517|gb|EDV63235.1| transcriptional regulatory protein CpxR [Escherichia coli B7A]
 gi|192929371|gb|EDV82979.1| transcriptional regulatory protein CpxR [Escherichia coli E22]
 gi|192958675|gb|EDV89113.1| transcriptional regulatory protein CpxR [Escherichia coli E110019]
 gi|194414464|gb|EDX30737.1| transcriptional regulatory protein CpxR [Escherichia coli B171]
 gi|194418520|gb|EDX34608.1| transcriptional regulatory protein CpxR [Shigella dysenteriae 1012]
 gi|194422764|gb|EDX38760.1| transcriptional regulatory protein CpxR [Escherichia coli 101-1]
 gi|208727765|gb|EDZ77366.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735595|gb|EDZ84282.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4045]
 gi|208740286|gb|EDZ87968.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4042]
 gi|209158417|gb|ACI35850.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. EC4115]
 gi|209752428|gb|ACI74521.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752430|gb|ACI74522.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752432|gb|ACI74523.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752434|gb|ACI74524.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209752436|gb|ACI74525.1| hypothetical protein ECs4838 [Escherichia coli]
 gi|209914651|dbj|BAG79725.1| two-component response regulator [Escherichia coli SE11]
 gi|217320845|gb|EEC29269.1| transcriptional regulatory protein CpxR [Escherichia coli O157:H7
           str. TW14588]
 gi|218354359|emb|CAV01104.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli 55989]
 gi|218363244|emb|CAR00889.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli IAI1]
 gi|218371370|emb|CAR19202.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli IAI39]
 gi|218434634|emb|CAR15567.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli UMN026]
 gi|226838565|gb|EEH70594.1| transcriptional regulatory protein CpxR [Escherichia sp. 1_1_43]
 gi|238860859|gb|ACR62857.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BW2952]
 gi|242379449|emb|CAQ34264.1| CpxR transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253326492|gb|ACT31094.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975764|gb|ACT41435.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli B str. REL606]
 gi|253979921|gb|ACT45591.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli BL21(DE3)]
 gi|254595312|gb|ACT74673.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O157:H7 str. TW14359]
 gi|257756335|dbj|BAI27837.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O26:H11 str. 11368]
 gi|257761814|dbj|BAI33311.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O103:H2 str. 12009]
 gi|257766988|dbj|BAI38483.1| DNA-binding response regulator CpxR in two-component regulatory
           system with CpxA [Escherichia coli O111:H- str. 11128]
 gi|260451250|gb|ACX41672.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281603309|gb|ADA76293.1| Transcriptional regulatory protein cpxR [Shigella flexneri 2002017]
 gi|284924013|emb|CBG37112.1| two-component response regulator [Escherichia coli 042]
 gi|290765198|gb|ADD59159.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli O55:H7 str. CB9615]
 gi|291321436|gb|EFE60875.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B088]
 gi|291425449|gb|EFE98488.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1412]
 gi|291430896|gb|EFF03892.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B185]
 gi|291468100|gb|EFF10598.1| DNA-binding transcriptional regulator CpxR [Escherichia coli B354]
 gi|298276314|gb|EFI17834.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           FVEC1302]
 gi|299880600|gb|EFI88811.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300318401|gb|EFJ68185.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359714|gb|EFJ75584.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397379|gb|EFJ80917.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401965|gb|EFJ85503.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300413784|gb|EFJ97094.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300420770|gb|EFK04081.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300453157|gb|EFK16777.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300456609|gb|EFK20102.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460547|gb|EFK24040.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300523805|gb|EFK44874.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300527524|gb|EFK48586.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300841344|gb|EFK69104.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300845306|gb|EFK73066.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076620|gb|EFK91426.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306906277|gb|EFN36793.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119781|gb|EFO57043.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|308928210|gb|EFP73672.1| transcriptional regulatory protein cpxR [Shigella dysenteriae 1617]
 gi|309704338|emb|CBJ03687.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334176|gb|EFQ00381.1| transcriptional regulatory protein cpxR [Escherichia coli 1827-70]
 gi|313647189|gb|EFS11642.1| transcriptional regulatory protein cpxR [Shigella flexneri 2a str.
           2457T]
 gi|315063204|gb|ADT77531.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli W]
 gi|315138479|dbj|BAJ45638.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Escherichia coli DH1]
 gi|315254285|gb|EFU34253.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617708|gb|EFU98313.1| transcriptional regulatory protein cpxR [Escherichia coli 3431]
 gi|320184955|gb|EFW59739.1| Copper-sensing two-component system response regulator CpxR
           [Shigella flexneri CDC 796-83]
 gi|320639162|gb|EFX08793.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644551|gb|EFX13608.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649874|gb|EFX18386.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H- str. H 2687]
 gi|320655275|gb|EFX23221.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660902|gb|EFX28348.1| DNA-binding transcriptional regulator CpxR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665967|gb|EFX32990.1| DNA-binding transcriptional regulator CpxR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323161185|gb|EFZ47102.1| transcriptional regulatory protein cpxR [Escherichia coli E128010]
 gi|323167338|gb|EFZ53046.1| transcriptional regulatory protein cpxR [Shigella sonnei 53G]
 gi|323174349|gb|EFZ59975.1| transcriptional regulatory protein cpxR [Escherichia coli LT-68]
 gi|323177933|gb|EFZ63517.1| transcriptional regulatory protein cpxR [Escherichia coli 1180]
 gi|323380731|gb|ADX52999.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934403|gb|EGB30816.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323938995|gb|EGB35213.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323943749|gb|EGB39847.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323959318|gb|EGB54979.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323964265|gb|EGB59748.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323969665|gb|EGB64949.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974321|gb|EGB69450.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324020500|gb|EGB89719.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324115685|gb|EGC09621.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|327250549|gb|EGE62257.1| transcriptional regulatory protein cpxR [Escherichia coli STEC_7v]
 gi|331036112|gb|EGI08348.1| transcriptional regulatory protein CpxR [Escherichia coli H736]
 gi|331046709|gb|EGI18794.1| transcriptional regulatory protein CpxR [Escherichia coli M718]
 gi|331057251|gb|EGI29241.1| transcriptional regulatory protein CpxR [Escherichia coli TA143]
 gi|331062020|gb|EGI33943.1| transcriptional regulatory protein CpxR [Escherichia coli TA271]
 gi|331067428|gb|EGI38833.1| transcriptional regulatory protein CpxR [Escherichia coli TA280]
 gi|331072355|gb|EGI43688.1| transcriptional regulatory protein CpxR [Escherichia coli H591]
 gi|332085156|gb|EGI90334.1| transcriptional regulatory protein cpxR [Shigella dysenteriae
           155-74]
 gi|332088270|gb|EGI93390.1| transcriptional regulatory protein cpxR [Shigella boydii 3594-74]
 gi|332105149|gb|EGJ08495.1| transcriptional regulatory protein CpxR [Shigella sp. D9]
 gi|332751599|gb|EGJ81998.1| transcriptional regulatory protein cpxR [Shigella flexneri 4343-70]
 gi|332752622|gb|EGJ83008.1| transcriptional regulatory protein cpxR [Shigella flexneri 2747-71]
 gi|332764548|gb|EGJ94780.1| response regulator [Shigella flexneri 2930-71]
 gi|332998014|gb|EGK17620.1| transcriptional regulatory protein cpxR [Shigella flexneri VA-6]
 gi|332998636|gb|EGK18233.1| transcriptional regulatory protein cpxR [Shigella flexneri K-218]
 gi|333013845|gb|EGK33207.1| transcriptional regulatory protein cpxR [Shigella flexneri K-304]
 gi|739996|prf||2004283A membrane sensor regulator
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 121 GHAQSLIVTGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q     G  ++ +DA       +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +   +E+ L    +       G+ G+ +     +D I+LDL L  + G E
Sbjct: 3   QILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPTMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  K +TP+ +L+  S   D+V GL+ GADDYI+KPF+  EL+AR++A++RR+  
Sbjct: 63  ICKKIRSQK-NTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTDI 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +    S++  G LS+++D + V +   +I L+ KE++++ L++       T+   L
Sbjct: 122 KPIPQKDTSSILAEG-LSIDIDKRKVILNDKKIELSPKEFELLVLMASNPGRNYTRTDLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           N ++    E     ++  I +LR K+ +      +I T WG GY   E+
Sbjct: 181 NMIWGYNFEGYEHTVNSHINRLRAKIESDMANPIFILTTWGVGYKFNED 229


>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 26/245 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RIL+++D+ ++  +I   L+ E + V   D   DG+   +  E    D ++L++ L  + 
Sbjct: 6   RILVVDDEPSVREAIGRALRFEGYEV---DTAGDGVAALRRIEEEPPDLVLLEVMLPGLD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R LR +  + P+ +++G  S+ D++ GL +GADDY+ KP+  EEL+AR+RA++RR
Sbjct: 63  GLAVARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRR 122

Query: 119 -------------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159
                              +R    + +   D++++   + V   G  + LT  E+ +++
Sbjct: 123 GRTVPAAPPVRAPSPWQAPARPEPGARLAFADMTLDTLTRQVTRSGRALDLTKTEFALLK 182

Query: 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L   R    L++   L  ++    EP    +DV++  LR+K + A G    + TV G GY
Sbjct: 183 LFLSRPRQVLSRAAILRDVWGFDFEPSSNTLDVYVMYLRRK-TEAGGEPRVVHTVRGVGY 241

Query: 220 VLREN 224
           VLR +
Sbjct: 242 VLRTH 246


>gi|240949189|ref|ZP_04753533.1| transcriptional regulatory protein CpxR [Actinobacillus minor
           NM305]
 gi|240296305|gb|EER46949.1| transcriptional regulatory protein CpxR [Actinobacillus minor
           NM305]
          Length = 241

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 123/236 (52%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F V V   G++ +   +   +D I+LD+ +  + G E
Sbjct: 3   KILLVDDDVELTELLAELLFLEGFGVTVVHNGQEALTELELQSYDIILLDIMMPILNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K++TPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQVR-QKLTTPVLMLSARDDDIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTTS 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRK 165
               +  ++   L+   + K +   G  +H              LTG E+ ++++L    
Sbjct: 122 MPNMIEPVIAVSLAPEDNGKQLSFGGVELHPGRQQAVFEGKELDLTGTEFALLQILIRNP 181

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 GQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 237


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +   +   L +   +V +   G   +   +    D ++LDL L  + G EV
Sbjct: 34  VLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGLEV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR      P+ +L+ +   +D++ GL+ GADDY++KPF+  ELV R+ +I+RR+   
Sbjct: 94  CRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAAP 153

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A +  +V G L V+  A+   + G  + LT +E+ ++  L        T+E  L+ ++ G
Sbjct: 154 ATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVW-G 212

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  +   + V + +LR+K+         I T+WG GY
Sbjct: 213 WEFGDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGY 250


>gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   + L L + N+++        G  L    + D I+LD+ L D  GFE
Sbjct: 5   KILIVEDDLDIMEVLSLTLANANYSILKASSLSSGWHLAVTQQPDLILLDVNLPDGTGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSS-IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +++R   +S  + I   ++  IE K+ G + GADDY++KPF  +EL+ARI+A ++R  
Sbjct: 65  LAKSIR--DVSDVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRN 122

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +S IV  D LS++LD K V   G  ++L  KE  ++  L    N  ++ +  ++H++
Sbjct: 123 PSKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                P++K + V I  LR+K+ +      +I+TV G GY
Sbjct: 183 GYDGVPDLKTVSVHISTLRRKIEDIPSKPKWIQTVRGFGY 222


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+   F V     G++ +       +  IILDL L  + G +
Sbjct: 5   RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGMDGRD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + P+ +L+      ++V G + GADDY+ KPF+  ELV R++A+++R+  
Sbjct: 65  VCAQIR-QHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   Q+L   G L + +DA+ VEV G  ++LT KE+ ++  ++ R +   ++E  L
Sbjct: 124 MEYARNAIQTLTFPG-LEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
             +++ +   + + +D  I +LR+KL  A+     YI TVWG GY
Sbjct: 183 RDVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGY 227


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L+   + V V   G +G+   + +  D ++LD+ +  + G E 
Sbjct: 4   ILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDGLEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR  R A+   PV  L+   +  DKV GL+ GADDY++KPF+  EL+AR+RA +RR    
Sbjct: 64  LRRFRAAE-HAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGNEA 122

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S  V  G+L ++  ++T  VQG R+ LT  E++++           ++   L  L + 
Sbjct: 123 PPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLELLEQLQEE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E + IDV +  LR K+    G   +IETV+G GY L
Sbjct: 183 ALGAE-RTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRL 221


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   V  D+   S+ +     EV  H   + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +I+DV I  LR KL +       I+TV G GY L
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKL 228


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|330981985|gb|EGH80088.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 197

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 104/195 (53%), Gaps = 2/195 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFI 194
               +P   +IDV I
Sbjct: 183 GYHFDPGTNLIDVHI 197


>gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 21/237 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ ++        +   +  I+LDLGL
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFTVTHARNGEEALQAVLPTAQGERPSYGVILLDLGL 60

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            D  G++V   +R    +TPV +++    +  ++ GL  GADDY+ KP++  EL+ARI A
Sbjct: 61  PDQDGYQVCGRIR-KLTTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIHA 119

Query: 115 IVRRSRGHAQSLIVT----------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           + RR  G  ++              G +++ L  + V V G  + LT KE+ ++ LL+ R
Sbjct: 120 VSRRHAGTEETAATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQR 179

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 PGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 232


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 21/240 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ +L   +   L++  F V     G   ++L +  + D I+LD+GL  + G E
Sbjct: 13  RALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDGIE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  +   D + GL  GADDYI+KPF+  EL+AR++ ++RR R 
Sbjct: 73  VCRTLRTFTDAY-VVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQ 131

Query: 122 HA-------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            A             ++  V G L +++ A+ V + G  + LT  E+ +++ LS R    
Sbjct: 132 SAADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVA 191

Query: 169 LTKEMFLNHLYDG----RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++ + L  ++ G     DE    ++DV I +LR+KL + A    YI T+ G GY + E 
Sbjct: 192 FSRSLLLERIWGGGAWAGDE---HLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRMGEG 248


>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL S ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIR-EKFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEMVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +         D + + +          G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  R       +   I +LR+K+   +    +I+TVWG GY +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L+ E F+V     G + + L + +  D ++LD+ +    GFE
Sbjct: 4   QILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPDGFE 63

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           + R L  +      PV +L+      D+V GL  GADDY+ KPF+  EL+ RIRA++RR 
Sbjct: 64  ICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRRG 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R     ++    + +  DA T E  G  + LT  E++++E L     +  T+E  LN +
Sbjct: 124 TRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR KL +AA   + +ETV G GY ++E
Sbjct: 184 WGYSFEGYARTVDTHVRRLRAKLGHAA---SMLETVRGVGYRIKE 225


>gi|126643237|ref|YP_001086221.1| two-component response regulator [Acinetobacter baumannii ATCC
           17978]
          Length = 199

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 103/185 (55%), Gaps = 9/185 (4%)

Query: 45  FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
           F  I+LD  L    G  + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN
Sbjct: 10  FSLIVLDFMLPVEDGLSICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFN 69

Query: 105 KEELVARIRAIVRR-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
             EL+ARIRA++RR       +      ++  G  S++L  +T+  +G  + LT  E+ +
Sbjct: 70  PNELLARIRAVLRRQVREVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAV 129

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWG 216
           ++ L       LT++  +N L  GR+   + + IDV + +LR+ + +      YI+TVWG
Sbjct: 130 LKALVQHPREPLTRDKLMN-LARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWG 188

Query: 217 RGYVL 221
            GYV 
Sbjct: 189 VGYVF 193


>gi|317126106|ref|YP_004100218.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590194|gb|ADU49491.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +A  +   +    +       G D +   + ++ D I+LDLGL    G E
Sbjct: 14  RVLVVDDERDIAEMVSDYIGRAGYVTLEAYTGPDAVSAAREFDPDVIMLDLGLPGFDGVE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R+      + +L+  +    +V GL  GADDYI+KPF+  E++ARI+A++RR R 
Sbjct: 74  VCRQIRMFS-DCYILMLTARADEVARVVGLSVGADDYITKPFSTNEVLARIQAVLRRPRR 132

Query: 121 --GHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              H +  +V       GDL + +  + V V G  + LT  E+ +++ LS R     T+ 
Sbjct: 133 TEPHVRPSVVEEPARVFGDLRIEVPGREVTVAGTPVPLTRTEFDLLDALSGRPKLVFTRR 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ ++D     +  ++DV I  +R KL + A    YIET+   GY
Sbjct: 193 ALIDEVWDTGWMGDEHVVDVHIGHIRGKLGDDANSAKYIETIRSVGY 239


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DDK +   + L L+ + + V +   GE+ +      + D I+LD+ L  I G++
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R  K + P+ +++      DKV GL+ GADDYI KPF+ +E++ARI+A+ RR  +
Sbjct: 65  VCREIR-KKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123

Query: 121 GHAQSLI--VTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A+S I  V  D LSVN+    + V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + IDV + +LR+KL   +  K  ++TVWG GY
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGVS-DKWALKTVWGVGY 224


>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|210617470|ref|ZP_03291592.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
 gi|210149301|gb|EEA80310.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
          Length = 237

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ L   +   L+ E F        +   +L K   FD I+LD  L D  GF 
Sbjct: 12  RILVIEDDEMLNAGLCYNLQMEGFEAAPAFGAKTAKKLWKEKSFDLILLDGNLPDGDGFA 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  +   P+  L+     ED + G ++GADDYI+KPFN + ++ RI+AI+RR  G
Sbjct: 72  VSREIR-KESKVPIVFLTARDMDEDMIEGFENGADDYITKPFNIKIVIQRIKAILRRCEG 130

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G+L+V+ ++ TV+  G  + LT  E++++    L     LT+++ L  L+
Sbjct: 131 DDTVEKVLQCGNLAVDFESHTVKKHGKLLTLTPTEFKLLHRFCLNPGQVLTRQILLEKLW 190

Query: 180 DGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D +D   V    + + I +LR K+++      YI+T++G GY
Sbjct: 191 D-QDGNFVDEHTLTINISRLRAKIADEEYA--YIKTIYGGGY 229


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|2961074|gb|AAC05918.1| TctD [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 9/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR+LL ED++ LAH +E  L    F V      L  D +   + Y    ++LD+ +  + 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQNGFAVDCVFERLAADHLLHSEMYAL--MVLDINMPGMD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV++ LR    + PV +L+    + D+V+GL  GADDY+ KPF  EEL AR+RA++RR
Sbjct: 59  GLEVVQRLRKRGQTLPVLLLTA-RRLADRVKGLNVGADDYLPKPFELEELDARLRALLRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G    +   G+L  + D     +QG  + LT +E  ++ +L  R+   ++++     +
Sbjct: 118 SAGLVHEVQQLGELIFH-DEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQV 176

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   DE   + I+++I +LRKKL    G    I  + G GYVL
Sbjct: 177 FSLNDEVSPESIELYIHRLRKKLQ---GSDVRITVLRGLGYVL 216


>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQ-AQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V    +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 241


>gi|221199618|ref|ZP_03572662.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD2M]
 gi|221205482|ref|ZP_03578497.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD2]
 gi|221174320|gb|EEE06752.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD2]
 gi|221180903|gb|EEE13306.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           multivorans CGD2M]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRQPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V  G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVNFGTVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|218463342|ref|ZP_03503433.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD   +  +            V   G D +   +   +D I++D  L  + G 
Sbjct: 1   MKILLIEDDAKTSDYVSKGFFEAGHVCDVFADGRDSLFQAQREAYDVIVVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR AK+ TP   L+ +  ++D+V GL++G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  AIVRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLVKPFAFSELLARVNALGRRPP 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++L  +     G  I L  +E+ ++E+L   +   +TK M L  ++
Sbjct: 121 VQEQKTVLKVADLELDLIRREARRAGQIIELQPREFTLLEVLMRGEGRVITKTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+       + + TV   GY L
Sbjct: 181 DFHFDPKTSVVETHISRLRAKVDKPF-ETHLLHTVRNTGYSL 221


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+++DD+A+  S+    +S  ++ Y  D   DG+E          DA+I+D+ +  +
Sbjct: 3   MHILVVDDDRAVRESLA---RSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ R
Sbjct: 60  DGLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTR 119

Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RSR       A   +   DL+++   + V     RI LT  E+ ++ +        L + 
Sbjct: 120 RSRPEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERS 179

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++ G D P     ++V+I  LR+K  +    +  I TV G GYVLRE
Sbjct: 180 WLLHEVW-GFDFPTTANSLEVYIGYLRRKTEHDCEAR-LIHTVRGVGYVLRE 229


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+ +D+K +A  ++  L+ E F V  T  G+    L KF+E   D IILDL L +I G
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTA--LAKFHEENPDLIILDLMLPEISG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R  +   P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS
Sbjct: 62  WDVCREIR-KESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRS 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ 
Sbjct: 121 EYPPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDK 180

Query: 178 L---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   Y+G +    + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 181 LGEAYEGYE----RTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|326332360|ref|ZP_08198639.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium
           Broad-1]
 gi|325949849|gb|EGD41910.1| transcriptional regulatory protein CutR [Nocardioidaceae bacterium
           Broad-1]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA S+   L+ ++  V V   G   +E     E+D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEPQLAESVAEWLRQQSHAVDVALDGGQALERVGVNEYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +  ++    V +L+  + +  +V GL  GADDY++KPF   EL AR+ A+ RRSR
Sbjct: 61  QVCHQIVGSESGARVLMLTAAADVTQRVSGLALGADDYLTKPFAFPELAARVLALGRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL+++   + V   G  + L  KE+ ++  L +     ++ E  L  ++D
Sbjct: 121 QAVPPVLRRGDLTLDPSRREVFRGGRYVPLARKEFGVLAELMMADGAPVSAEHLLEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P    + V + KLR+KL    G    +ETV G GY LR
Sbjct: 181 EHADPFTNAVRVTLHKLRRKL----GDPPLVETVTGVGYRLR 218


>gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V    +  +   PV  L+        V GL  GADDY++KPF   EL+ARIR  +R+S  
Sbjct: 63  VCTETKETQ-DIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRKSGC 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +  + G L V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 122 SPSASEICG-LHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRARLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             E      + V+I +LR+K+ N       I TV G GY L +N   E
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPTSPQIILTVRGTGYRLGDNYASE 228


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61
           ILL+ED+  LA +IE  L+ E +   V   G   +E L +    DAI+LDL L DI G E
Sbjct: 13  ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   PV +++   +  D+V G + GADDY+ KPF+  EL+ RIRA++RR+
Sbjct: 73  ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A +  +I    L V+ +   V V    I LT  E++++     R+    T++  L+ 
Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++    +   + +D  + +LR+KL +A     Y+ET+ G GY  R+    E  E
Sbjct: 193 VWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFRDRPIGEPDE 243


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++DD  L       L +E F V +   GE G+E     ++D I+LD+ +  + G 
Sbjct: 2   IRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMPKLNGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VLR LR    + PV +L+      D++ GL+ GADDY+SKP    ELVAR+RAI+RR+ 
Sbjct: 62  DVLRRLR-NHSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRRAD 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  Q L V G L+++  ++    +   + LT  E+ ++E+L  R    ++KE  
Sbjct: 121 PDKQEPGQLQPLRV-GALTISAASRNATWRDELLDLTSTEFNLLEILCRRAGRIISKEDL 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H   GR      + IDV +  LR+KL     G++ I+TV G GY L
Sbjct: 180 SLHTL-GRPLARYDRSIDVHVSNLRQKLGVLKDGRSPIQTVRGIGYQL 226


>gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGFE 61
           IL++EDD      I   L+   F V   + G   ++L   + + DAIILDL L D  G E
Sbjct: 6   ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHKDIDAIILDLFLPDCNGLE 65

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ +R   I +  PV IL+      D V  L+ GADDYI+KPF+K EL+ARI   +RR+
Sbjct: 66  LLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLRRA 125

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEM 173
               R H  S  ++G   + LD  T EV+     I LT  E++++ L         +++ 
Sbjct: 126 QNTIRSHNTSRSISG---ITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRDD 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  L+      E ++ID+ I  LRKKL ++      IET+ G GY LR+
Sbjct: 183 LLTKLWGESFVSETRVIDMHISSLRKKLDDS--DNQLIETIRGVGYRLRK 230


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+  +   + L L+ E + V     G   +EL +  +       FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R +R    + P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   S   A  +    D+ +      V V+G  I+L+ KE++++EL         ++
Sbjct: 140 LLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 EQLIEQVWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGY 247


>gi|295134400|ref|YP_003585076.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294982415|gb|ADF52880.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  +  +I+  L+ E + V      E+  +    Y +D I+LD+GL D  G 
Sbjct: 1   MKILVIEDELQMLENIQQNLEKEKYLVETAQTCEEAQQKIGVYNYDCILLDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ L+   +   V I+S   S++DK++GL+ GADDY+ KPF   EL ARI+A++RR  
Sbjct: 61  ELLQYLKSQNLMDAVIIVSAKDSLDDKLKGLELGADDYLPKPFYMAELNARIKAVLRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + I   +  +  + + V+++   + L  KE+ ++  L   K   + K     H++ 
Sbjct: 121 FEGNNTIKLANTEIFPEQRRVKIKNKEVELNRKEFDILMYLVANKERLVRKPSLAEHVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  D+ +  + I   I  LRKKL       N I+ V+G GY L
Sbjct: 181 DNIDQADSFEFIYSQIKNLRKKLKTHHSALN-IKAVYGIGYKL 222


>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
 gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
          Length = 251

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   + + LK+  +       G +G+ L      D I+LDLGL DI G  
Sbjct: 28  RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGLPDIDGLT 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R +    P+ I+S      +KV  L  GADDYI+KPF+  EL+ARIR  +R+ + 
Sbjct: 88  VLEQVRQSS-DIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRKHQP 146

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +      L ++ D + V V G+ +HLT  EY+++ LL       LT       ++
Sbjct: 147 KISKNNQFTLDGLRIDFDKRKVTVDGNEVHLTPIEYKLLVLLVENAGKVLTHSFINKEIW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +  + + + VF+  +R+K+        YI T  G GY
Sbjct: 207 GYTNTEDSQSLRVFMANIRRKIEKDTAKPRYILTEVGVGY 246


>gi|254463875|ref|ZP_05077286.1| DNA-binding response regulator [Rhodobacterales bacterium Y4I]
 gi|206684783|gb|EDZ45265.1| DNA-binding response regulator [Rhodobacterales bacterium Y4I]
          Length = 221

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MR LL+ED+++LA +I   L     + +V D   D      F    ++D I+LD+ L D 
Sbjct: 1   MRFLLVEDNESLAKAI---LDRLRLDGHVADHAPDVSTASAFSGITDYDLILLDIMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L+A R  +  TPV +L+  S + D+V  L  GADDYI+KPF+  EL AR RA++R
Sbjct: 58  DGRSFLKAHRENRKETPVIVLTARSEVSDRVGMLDLGADDYITKPFDFSELEARCRAVLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G + +L   G+L  +  A T+   G  + L  +E +++E+         +K   ++ 
Sbjct: 118 RRGGGSSNLRRFGNLQFDPMAGTLSAGGRTVALRNRELRLLEVFLNAPERIFSKPNLVDR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+   +E     I+V++ +LRK L   AG    I TV G GY L
Sbjct: 178 LFSYDEEGSENAIEVYVARLRKHL---AGSGVQITTVRGLGYRL 218


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|260584965|ref|ZP_05852709.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
 gi|260157395|gb|EEW92467.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
          Length = 236

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED +A+   +E+  + E +       G++G +    ++  +D +ILDL L  + 
Sbjct: 1   MHILMIEDTEAVCEMMEMFFEKEGWTAEFYHDGKEGYDAFVNHQDKWDLVILDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R      P+ +L+   S  D+V GL+ GADDY++KPF+   ++ARI+A+ RR
Sbjct: 61  GMQICRQIRQMNEQVPIVMLTARDSESDQVIGLEIGADDYVAKPFSPLTMMARIKALHRR 120

Query: 119 -SRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
             RG          Q  I T  +S+N       + G +I  LT KE+ ++ L++      
Sbjct: 121 IGRGISSETPTNSGQFDIETKHVSINTRTHEAFIDGVKIDGLTPKEFDLLVLMAQHPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++E  L  +++     + + ID  I KLR+K+   A G + I+TVWG GY
Sbjct: 181 FSREHLLTKIWEDPFYGDERTIDAHIKKLRQKIE--AVGPHVIQTVWGVGY 229


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +   + + L  E ++V     GE+G+ + + +  D ++LDL L D+ G  
Sbjct: 3   KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  ++R  +   P+ ILS  S + ++V+ L++GADDY+ KPF+  E+ AR+ A++RRS+ 
Sbjct: 63  VCASIR-ERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQF 121

Query: 121 ------GHAQSLIVTGDLS-VNLDA--KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   + S     DL+ + LD+  + + V+G  I  T  E++M++L         ++
Sbjct: 122 SATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E  +N +         + IDV I  LRKK+         I TVWG GY
Sbjct: 182 EELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGY 229


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ L   +   L++E F V     G++     +    D ++LD  +  + G E
Sbjct: 4   RILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLSGIE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   P+ +L+      D+VRGL +GADDYI KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  V  +G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +      + + +DV I +LRK + N     + I TV G GY   E   + T 
Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAI-NRPRRPDPIRTVRGSGYSFDEMFANGTA 234


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI   DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 DVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+ +D+K +A  ++  L+ E F V  T  G+    L KF+E   D IILDL L +I G
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTA--LAKFHEENPDLIILDLMLPEISG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R  +   P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS
Sbjct: 62  WDVCREIR-KESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRS 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ 
Sbjct: 121 EYPPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDK 180

Query: 178 L---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   Y+G +    + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 181 LGEAYEGYE----RTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
 gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM
           13280]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC----KFYEFDAIILDLGLTDI 57
           RILL+EDD  +  ++  +L S  ++V   D     IEL         +  ++LD+ L + 
Sbjct: 4   RILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTLREG 63

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF V  A++    STPV  L+      + V GL  GADDY++KPF   EL+ARI A +R
Sbjct: 64  NGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+  ++ ++  GD+ ++ D   VE +G  + L+  EY+++ L +      ++++M  + 
Sbjct: 124 RSQ-PSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDA 182

Query: 178 LYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+D      E   + V+I +LR K+ +       I+TV G GY
Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEDDPSRPELIQTVRGLGY 225


>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL ++ +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGSREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R+LR ++ + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCRSLR-SRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G + +++D   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 GGAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + K +DV + +LR K+        ++ TV G GY
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGY 225


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 126/230 (54%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +    D IILDL L    G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRR-HD 120

Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +A++ +V          G L+V+ DA  V  +G  I LT +E++++  L+      +T+E
Sbjct: 121 NAKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 181 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLR 230


>gi|71736792|ref|YP_274243.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557345|gb|AAZ36556.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ ED++ +   + L L  E++NVY    G + +++    + D  ILD+ +  + GF
Sbjct: 1   MNILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K + PV  ++     E+K+ GL  GADDYI KPF+  E+VAR++A+ RR  
Sbjct: 61  KVLKKIR-EKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVG 119

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++Q+       I  G+LS+N D+ T    G+ I L  KEY+++E L   K    TK+  
Sbjct: 120 TYSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++      +   I V I  +R K+ +      Y++T+ G GY L +
Sbjct: 180 YEKVWGYEYYGDANTIMVHISHIRDKIEDNPKEPIYLKTIRGIGYKLEK 228


>gi|332983367|ref|YP_004464808.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332701045|gb|AEE97986.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K++ H I++ L+++++     + G   I L   Y  D +ILDLGL DI G +V
Sbjct: 5   ILIVDDEKSIRHFIKVALETQSYRCMEAENGLTAISLAASYSPDIMILDLGLPDIDGIDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    +  + ++S       KV  L +GADDY++KPF+  EL+ARIR  +RR    
Sbjct: 65  IKKIREWS-ALDIIVVSARGHERQKVEALDAGADDYLTKPFSVPELLARIRVALRRENAL 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q +    DL V+ D + V +    IHLT  EY+++ LL   +   LT    +
Sbjct: 124 ERHEEGLLQPVFELDDLKVDFDKQKVTICDKDIHLTPTEYKLLALLIKHRGKVLTHMSII 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      + + + V +  +R+K+        YI T  G GY
Sbjct: 184 KEIWGPYSVDDTQSLRVCMANIRRKIERDPAQPRYIITEVGVGY 227


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +   +   L +  + V     G++ +E      +D I+LDL L  + G 
Sbjct: 1   MRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 61  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++  +   +    +   + LT KE  ++E L +     +++E  + H++D
Sbjct: 121 VQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LRKKL  A  G + I+   G GY +RE +
Sbjct: 181 ATADSFSGAIRVHMSSLRKKL-KAKLGYDPIQNKVGEGYKIREES 224


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L    F V V     + +E       D ++LD+ L    GFE
Sbjct: 8   RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   +  PV  L+   ++ED+VRGL+ G DDY++KPF+  E+ AR++A++RR+RG
Sbjct: 68  ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRARG 127

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A +   T      DL ++     V   G  + L+  EY+++  L   +   L++   L 
Sbjct: 128 GAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRLLHYLLSHQGQVLSRAQILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +  +++ F+  LR+K+    G +  + TV G GY LRE A
Sbjct: 188 AVWQYDFGGDTVVVERFVSNLRRKIDQ--GREPLLHTVRGVGYTLREQA 234


>gi|262044958|ref|ZP_06018000.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037685|gb|EEW38914.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+E ++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEYEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|257867576|ref|ZP_05647229.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257873905|ref|ZP_05653558.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257877663|ref|ZP_05657316.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257801632|gb|EEV30562.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257808069|gb|EEV36891.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257811829|gb|EEV40649.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 240

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 14/231 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G+E    +  ++D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEAAFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 64  GMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 123

Query: 119 SR---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           S            A   +VT    +N   +   + G  I  LT KE+ ++  L+ +    
Sbjct: 124 SELVEKTTPEASDATFDVVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 184 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGY 232


>gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016]
 gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  ++L L+ E + V  T  G  G+E      +D IILD+ L  + G E
Sbjct: 8   KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 67

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VLR LR  +IS  PV +L+    I DKV GL  GA+DY++KPF  EEL+ARIR + +   
Sbjct: 68  VLRRLR--QISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  ++I  G L +++    V  +   I LT KE+ +++ L + K+  L++E  L  
Sbjct: 126 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I+DV+I  LR K+ +    K YI T+ G GY  R
Sbjct: 186 VWGYDYLGDTNIVDVYIRYLRSKIDDKF-NKKYIYTIRGLGYQFR 229


>gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
 gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED       ++  L+   F V V D G DG+       +  +ILD+ L  + G+
Sbjct: 1   MRILLIEDHLKTQGWVKNGLEEAGFLVDVADDGRDGLYFALENNYQLVILDIMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR AK + PV  L+   +++D+++GL+ GA+DY+ KPF+  EL+AR++  ++ ++
Sbjct: 61  EILKILRTAK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVNQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++ +  DL ++L    VE  G +I LT +E+ ++    L  +  L + +  + ++ 
Sbjct: 120 PVSTTMTI-ADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  IIDV I +LRKK+ +    K  IET+ G GY L
Sbjct: 179 IDFDSDTNIIDVAIRRLRKKIDDEFEIK-LIETIRGMGYRL 218


>gi|251800058|ref|YP_003014789.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547684|gb|ACT04703.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MRIL++ED+  LA ++  +LK  N++V V   G+ G++  LC  Y  D ++LD+ L ++ 
Sbjct: 1   MRILIVEDEVNLADALSQILKKNNYSVDVAHDGQSGLDNALCGIY--DLLLLDIMLPEMD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-EELVARIRAIVR 117
           G  VL+ LR   I+TPV +L+    I DK+ GL  GADDY++KPF+  E L     A+ R
Sbjct: 59  GITVLKKLREEGIATPVIMLTAKGEINDKITGLDYGADDYVAKPFSTGELLARIRAALRR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     +  +  GD+ +N     +  +G  + +  KE +++ELL  RK    +KE  +  
Sbjct: 119 RGEVVPEDGLKYGDIELNTSNLKLMCKGKELKVILKESELMELLIARKTAVTSKEQIIEK 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+    + E   ++V+I  LRKKL     G   I T+ G GYVL   +
Sbjct: 179 LWGFDSDVEHNNVEVYISFLRKKLVFLQSGVK-INTIRGVGYVLEATS 225


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ +A      L++  F V +   G +G+       +DA+ILD+ L    GFE
Sbjct: 3   KVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGWDALILDVMLPGKSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------- 114
           V R +R   +  PV +++      DK+RGL  GADDY+ KPF+  ELVAR+++       
Sbjct: 63  VCREVR-KSLHLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHIQIHER 121

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           ++       +  I+  +L++    + V + G  ++L  KE++++  L+   N   +K+  
Sbjct: 122 LLEHREQQKEDAIIVKNLAIRPKERRVYLNGEEMNLANKEFEVLLFLAENPNIVFSKDTL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + ++          + V I +LR+KL   A    +IETVWG GY
Sbjct: 182 FDRIWGMDSVGNTATVTVHINRLREKLEKNADSSPFIETVWGAGY 226


>gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED++ +   ++  L+ E + V  +D G +GIE  K    D ++LD  L D  G E+
Sbjct: 5   IHIVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKKLFPDLVLLDWMLPDFSGVEI 64

Query: 63  --LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +          P+ +L+     EDK++GL SGADDYI+KPF+  EL+ARI+A++RRS+
Sbjct: 65  CKILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALLRRSK 124

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S IV   DL V+   + V  +   IHL  KEY +I           +++  L +++
Sbjct: 125 PSLVSDIVEFEDLKVDRLTRRVFRKNKEIHLGPKEYDLINFFIKNPKRVYSRDQILENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR+ + N  G K  I TV   GY L
Sbjct: 185 SDNINVETRTVDVHIRRLRQSI-NIDGFKELIRTVRSAGYSL 225


>gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 235

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE F+V V   G+  +        D ++LD+ +  + G EV
Sbjct: 5   IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDIKMPIMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  K   PV  L+      D+  GL SGADDYI+KPF+   L+ARIRA++RR+   
Sbjct: 65  LRRLR-EKSMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEAR 123

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            Q           +IV G L ++ D   V   G  I LT  E+ ++E L+ R     +++
Sbjct: 124 FQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  Y      + + ID  I +LR+K          IET++G GY   E
Sbjct: 184 QLMDTAYQDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRFAE 234


>gi|307325057|ref|ZP_07604261.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889203|gb|EFN20185.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 217

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIAVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    I T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGIPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VALPPVLERAGIKLDPNRREVFRDGKEIQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL   A     I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPA----VIVTVPGSGY 215


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL+++DD+A+  S+    +S  ++ Y  D   DG+E          DA+I+D+ +  +
Sbjct: 3   MHILVVDDDRAVRESLA---RSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRL 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ R
Sbjct: 60  DGLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTR 119

Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RSR       A   +   DL+++   + V     RI LT  E+ ++ +        L + 
Sbjct: 120 RSRPEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERS 179

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++ G D P     ++V+I  LR+K +   G    I TV G GYVLRE
Sbjct: 180 WLLHEVW-GFDFPTTANSLEVYIGYLRRK-TEHDGEARLIHTVRGVGYVLRE 229


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 127/220 (57%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HA 123
            +R ++ + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAIP-----YIKTIKGIGYKIDE 214


>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 10/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + V+V + G++GI + K    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     LV+RI AI+RR+
Sbjct: 67  ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + + +  GDL ++ +A  V   G ++ L  KE++++ LL+ +     T+E  L 
Sbjct: 127 SSSDEVSDNKVEIGDLVIDREAYLVFQNGEKVVLAKKEFELLYLLASKPGKVYTRESILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++       + IDV I KLR+KL     G+ Y+ TV G GY
Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKL-----GERYVATVKGVGY 224


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+ +D+K +A  ++  L+ E F V  T  G+    L KF+E   D IILDL L +I G
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTA--LAKFHEENPDLIILDLMLPEISG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R  +   P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS
Sbjct: 62  WDVCREIR-KESHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRS 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ 
Sbjct: 121 EYPPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDK 180

Query: 178 L---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   Y+G +    + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 181 LGEAYEGYE----RTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD+ +   IE+ LK+E + V     G + +      + D IILD+ + ++ G    
Sbjct: 1   MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
             +R +    P+ ++S      DK+ GL +GADDY+SKPFN  EL AR++A++RR+    
Sbjct: 61  TQVRKSS-QVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQ 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++  G L+++     V  +G+ I LT  E++++ LL+  +    + E     ++
Sbjct: 120 PEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   E   K + V I  LR+KL  A  G+  I TVWG GY
Sbjct: 180 NEPGEGSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGY 219


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIP 58
           +IL+I+D+    H +EL+  +   N Y+ D   D  E     K  + + I+LD  L +I 
Sbjct: 4   KILVIDDE---MHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNIS 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G +VL+ +R  +    TPV +L+  +   DKV+GL+ GADDYI+KPF  +EL+ARI +++
Sbjct: 61  GIDVLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVL 120

Query: 117 RR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RR   +    + ++   D+ ++L    V  +  +I LT KE+ +++LL   K   L++  
Sbjct: 121 RRYNMTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNF 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      E + +DV I  LRKK+ N   G+ YIET+ G GY
Sbjct: 181 LLDKVWGYEYFGETRTVDVHIRYLRKKIEN--DGEKYIETIRGIGY 224


>gi|332531014|ref|ZP_08406934.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039535|gb|EGI75941.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 243

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 122/240 (50%), Gaps = 24/240 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ L  S+  +L            G    +       DA++LDLGL  I G  +
Sbjct: 4   ILLVEDDELLRDSVSDLLVQAGHRTLTCADGLSAQQQLSTEAVDAVLLDLGLPGIDGMSL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R    S PV IL+   SI+ +V GL +GADDY++KPF   EL AR++A++RR+R  
Sbjct: 64  LRWIRERFESLPVLILTARDSIDHRVEGLMAGADDYMTKPFGNAELSARLQALLRRARLP 123

Query: 121 ----------------GHAQSLIVTGDLSVNLDAKT--VEVQGHRIHLTGKEYQMIELLS 162
                            H QS   T   S++ D +   V V+G  I LT +E++++ +L 
Sbjct: 124 AFEARQVATGVESGTSTHTQSAAATAAPSLHFDTEQPRVWVRGQPILLTQREWELLRVLH 183

Query: 163 LRKNTTLTKE-MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + N  ++++ + L    DG +      ++V++ +LR+KL    G    I  + G GY+L
Sbjct: 184 AQINQVVSRDNVLLVWQTDGSEPIASNALEVYVHRLRRKLQ---GTGASIRNIRGLGYML 240


>gi|324328962|gb|ADY24222.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +   IE  L  E + V     GE+ ++       D IILD+ L D+ GF+
Sbjct: 4   KILLVDDEPDILTFIEDSLVMEGYEVRSALSGEEALKKLD-NSVDLIILDVMLPDMNGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+  LS  SS   ++ GL  G DDYISKPF+ +EL ARI A +RR+  
Sbjct: 63  VCEKMR-ESYACPILFLSADSSERSRIEGLLIGGDDYISKPFSLKELKARIVANLRRTTD 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +  G + ++L    +     +IH T KEY+++++L+L     LTKE     
Sbjct: 122 LRMVDQKEFLRYGSILIDLQNYEIMNGKEKIHFTKKEYEVVKMLALHAGQVLTKEQLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +V  +   I K+R KLS       YI+TVWG GY
Sbjct: 182 IWGYDSESDVSTVVEHIKKIRTKLSVYDRENTYIQTVWGIGY 223


>gi|308047807|ref|YP_003911373.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307629997|gb|ADN74299.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ L   +  +L+ E F + V   G  G+   +  E D ++LD+ L  + GF+
Sbjct: 3   RILLVEDDQGLCELLGQLLELEGFTLTVRQDGPSGLLEAQNGEHDIVLLDVMLPGLNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR  K   PV +L+      D+V GL+ GADDY+ KPFN  EL+ARIRAI+RR+R 
Sbjct: 63  VLRQLR-QKSDVPVLMLTARGDDIDRVVGLEIGADDYLPKPFNDRELIARIRAILRRTRD 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + Q  +V  DL++    +   V    + LT  E+ ++  L+      ++K+    
Sbjct: 122 KESSSNGQDELVCDDLTLYPRRQEAWVNEALLPLTATEFSLLLELTQNPGELISKDRLSE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +   +  P  + +D+ +  LR+KL   +  +  ++TV G+GY+
Sbjct: 182 AVLGKKLMPFDRSLDMHLSNLRRKLPERSDNRPRVKTVRGKGYI 225


>gi|300722371|ref|YP_003711657.1| response regulator in two-component regulatory system with KdpD
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628874|emb|CBJ89457.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 231

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL +ED+K +   + L L+SEN  V+  D  + G+      + + +ILDLGL D  G ++
Sbjct: 9   ILFVEDEKEIRRFVRLALESENLRVFECDTLKRGLIETATRKPELLILDLGLPDGNGIDL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    + P+ +LS   + +DKV  L +GADDY+SKPF   EL+AR+R  +RR    
Sbjct: 69  IREVRQWS-NIPIIVLSARDNEQDKVAALDAGADDYLSKPFGINELLARVRVALRRLSKA 127

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +Q   +I   D+ V+L  + V    + +HLT  EY+++  L       LT+   LNH++ 
Sbjct: 128 SQFNPVIYFSDIQVDLVNRRVLKGQNELHLTPIEYRLLTELITNSGKVLTQRYLLNHVWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    + +++  LR+KL        Y+ T  G GY    N
Sbjct: 188 PNYVEHNHYLRIYMGHLRQKLEADPARPKYLLTETGVGYRFMPN 231


>gi|291618228|ref|YP_003520970.1| TctD [Pantoea ananatis LMG 20103]
 gi|291153258|gb|ADD77842.1| TctD [Pantoea ananatis LMG 20103]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+ED   LA  ++  L  + F V   D   DG+ +    +  ++  ++LD+ L  +
Sbjct: 6   MRLLLVEDTAELARWLQKALTQKGFAV---DWVADGLAVDHSLQSEDYALVVLDVSLPRL 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVL  LR    + PV +L+  ++++D+VRGL +GADDY++KPF  +EL AR+RA++R
Sbjct: 63  DGIEVLTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+G +      G L +N +   +  +   + LT +E  ++  L  R+   ++++     
Sbjct: 123 RSQGQSPQNQTLGQLVLNGEGYFLLAE-KPLALTPRESSVLTTLMQRQGRPVSRQHLYEQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   DE   + I++++ ++RKKL   AG    I T+ G GY L   A D
Sbjct: 182 TFTLADEASPESIELYVHRVRKKL---AGSDVGIVTLRGLGYSLETLACD 228


>gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
 gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L  +I   L    + V     G + ++     ++D I+LDL L  + G 
Sbjct: 1   MRLLIVEDEKELCDTISKSLYESGYEVDTCYDGYEALDYILTEDYDLIVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     T V ILS  S I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 61  DILRELRKENEETKVLILSARSQIIDKVEGLDAGANDYMEKPFHIQELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D+  +   +    +G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 VQKDICLHCKDIKFDTKKREAYAKGILVPLTRKENGILEYLLLNQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     I V +  LRKK  +  G    +  + G GY L E
Sbjct: 181 ASIDSFSGSIRVHMSSLRKKFKSVLGYDPIVNKI-GEGYKLVE 222


>gi|251797251|ref|YP_003011982.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544877|gb|ACT01896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD +++ +I   L+ E + V     GE  +E  + ++ D IILD+ +  + G+
Sbjct: 1   MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L   K    V +L+  + I DKV GL+ GADDY++KPF+  E++AR++ + RRS 
Sbjct: 61  EVFRKLN-QKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSH 119

Query: 121 ----GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +++   VT   G LS+   ++TV + G  + LT KE+ ++  L+   +   ++++
Sbjct: 120 FTTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKV 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++D       + +D+ I +LRKKL    G    I+T+ G GY
Sbjct: 180 LLKKVWDIHYAGGTRTVDIHIQRLRKKLGRWHG---LIQTINGIGY 222


>gi|88797530|ref|ZP_01113119.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
 gi|88779702|gb|EAR10888.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 16/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  I   L ++ +++ +   G D + L +  + D ++LD+ L    GF+V
Sbjct: 6   ILLVEDDASLATWIADYLTNQGYDITLATNGIDAVTLIRDDQPDLVLLDVNLPGKDGFDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +RV     P+ I++      D+V GL+ GADDYI+KP     L+ARI+ +++R   +
Sbjct: 66  CREVRVF-YHRPILIMTARLEETDEVLGLEMGADDYITKPVRPRALLARIKGLLKRELHN 124

Query: 123 AQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               + +      G L ++  A+T  +    + ++  E+ ++  L+    T +T+E  L 
Sbjct: 125 PVPDVASDQKLRLGALVIDATARTTTLHDEPVRISSNEFDVLWYLASHAGTIVTREQLLK 184

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +    YDG D    + +DV + ++RKKL +A    + I+TVWG+GY+L  +A
Sbjct: 185 DVRGLEYDGFD----RSMDVLVSRIRKKLGSAE-HPDRIKTVWGKGYLLVTDA 232


>gi|260362926|ref|ZP_05775795.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus K5030]
 gi|260880213|ref|ZP_05892568.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AN-5034]
 gi|260895330|ref|ZP_05903826.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus Peru-466]
 gi|260901155|ref|ZP_05909550.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AQ4037]
 gi|308085719|gb|EFO35414.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus Peru-466]
 gi|308091713|gb|EFO41408.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AN-5034]
 gi|308109368|gb|EFO46908.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AQ4037]
 gi|308112160|gb|EFO49700.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus K5030]
          Length = 243

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +  +V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHHVSRESSVAAGRNTYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQRQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGY 237


>gi|257486326|ref|ZP_05640367.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320324926|gb|EFW80998.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329081|gb|EFW85079.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|331010614|gb|EGH90670.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+  ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR+ +R+S G
Sbjct: 63  VCTEIKETQ-DIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H+ S      + V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 121 HSPSAFEILGIHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRSRLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E      + V+I +LR+K+ N       I T+ G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTIRGTGYKL 221


>gi|157373042|ref|YP_001481031.1| DNA-binding transcriptional regulator CpxR [Serratia proteamaculans
           568]
 gi|270265194|ref|ZP_06193456.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|157324806|gb|ABV43903.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|270040828|gb|EFA13930.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F + V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFTIVVAYDGEQALSLLDSSIDLLLLDIM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIV-TGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q   V TG  ++++D        +     G  + LTG E+ ++ LL+      +++E+
Sbjct: 121 SEQQQNVDTGAPTLDVDGLQLNPGRQEASFDGQTLDLTGTEFTLLYLLAQHLGQVVSREL 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL N   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPNRKDGHPWFKTLRGRGYLM 228


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RILL+EDD  + +++   L    + V   D   DG E   KFYE  +  +ILD+ L  +
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQV---DACTDGNEAYTKFYENTYQLVILDIMLPGM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+LR  R AK  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++R
Sbjct: 60  NGHELLREFR-AKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   A+ + V G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ 
Sbjct: 119 RSGALAKEIRV-GRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E +   +   I  LR KL      +N I+T+ G GY L E+
Sbjct: 178 IWGYDFEGDGSTVHTHIKNLRAKLP-----ENIIKTIRGVGYRLEES 219


>gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATYGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
 gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
          Length = 247

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 23  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 83  ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N D + V   G +I+LT  ++ ++  L       ++K   L+++
Sbjct: 143 VAAIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  I++++I  LRKK+    G +  I TV G GYVLR
Sbjct: 203 WNYDFGGQANIVELYISYLRKKID--VGREPMIHTVRGAGYVLR 244


>gi|269797462|ref|YP_003311362.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|282849136|ref|ZP_06258521.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313893989|ref|ZP_07827555.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
 gi|269094091|gb|ACZ24082.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
 gi|282580840|gb|EFB86238.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313441553|gb|EFR59979.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 229

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A+     L    ++V +   G DGIE       D IILD+ L ++ GFEV
Sbjct: 5   ILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K+  P+ +++      DK+RGL  GADDYI KPF+   L+A+I+A++ + +  
Sbjct: 65  CRQIR-DKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKRL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + I +G++ ++     V V    +HL  KE+Q++E L   ++   +KE   +
Sbjct: 124 TERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V I +LR+++ +      +I TVWG GY
Sbjct: 184 RVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGY 226


>gi|33594423|ref|NP_882067.1| osmolarity response regulator [Bordetella pertussis Tohama I]
 gi|33597882|ref|NP_885525.1| osmolarity response regulator [Bordetella parapertussis 12822]
 gi|33602785|ref|NP_890345.1| osmolarity response regulator [Bordetella bronchiseptica RB50]
 gi|293603945|ref|ZP_06686359.1| transcriptional regulatory protein OmpR [Achromobacter piechaudii
           ATCC 43553]
 gi|3288064|emb|CAB09801.1| RisA protein [Bordetella bronchiseptica]
 gi|3288070|emb|CAA12131.1| RisA protein [Bordetella avium]
 gi|3288083|emb|CAA12132.1| RisA protein [Bordetella parapertussis]
 gi|3288101|emb|CAA12129.1| RisA protein [Bordetella pertussis]
 gi|33564498|emb|CAE43813.1| tresponse regulator protein [Bordetella pertussis Tohama I]
 gi|33574311|emb|CAE38644.1| tresponse regulator protein [Bordetella parapertussis]
 gi|33577227|emb|CAE35784.1| tresponse regulator protein [Bordetella bronchiseptica RB50]
 gi|292817638|gb|EFF76705.1| transcriptional regulatory protein OmpR [Achromobacter piechaudii
           ATCC 43553]
 gi|317401980|gb|EFV82581.1| response regulator protein [Achromobacter xylosoxidans C54]
 gi|332383834|gb|AEE68681.1| osmolarity response regulator [Bordetella pertussis CS]
          Length = 244

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 16/211 (7%)

Query: 23  ENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNV+V    ED  E+ K ++   FD ++LDL L    G  + R LR    +TP+ +L+
Sbjct: 32  QGFNVFV---AEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
             +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G 
Sbjct: 89  AKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGP 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKII 190
             +NL  +T+   G ++ +T  E+ ++++ +      L+++  +  L  GR+ E   + +
Sbjct: 149 YVLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLM-ELARGREYEAFDRSL 207

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LRK +        +I+TVWG GYV 
Sbjct: 208 DVQISRLRKLIEPNPSKPVFIQTVWGLGYVF 238


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   + + L++E + V +   G D        EFD  +LD+ L DI GFE+
Sbjct: 5   ILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPDIDGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
           LR +R A  + PV +L+   +  DK+ GL  GADDY+ KPF   ELVAR++A +R     
Sbjct: 65  LRTIR-ADRTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRRYTSY 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             R  G    +I    L +N  A++V V   ++  T  EY ++  L+  +   +  E   
Sbjct: 124 GTRDSGEESPIISVNGLVINRAARSVTVDEKQVRCTPLEYSILLYLAEHRGRVVPVEDLF 183

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++D +        + V I  LR+K+ + A    +I+ +WG GY + +
Sbjct: 184 RAVWDEKFLSSSNNTVMVHIRHLREKIGDDAQNPRFIKNIWGVGYTIED 232


>gi|312884858|ref|ZP_07744550.1| positive response regulator for pho regulon [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367510|gb|EFP95070.1| positive response regulator for pho regulon [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 268

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 39/263 (14%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +A+ I L LK + +   +T    +G ++      DA+ILD  L D  G E+
Sbjct: 5   ILVVEDDQDMANLISLNLKVQGYKTILTSHISEGYQIVCQGLADAVILDRKLCDGDGTEM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            + LR  +IS P+ +L+G++S  D V GL++GADDY++KPF+  EL AR+RA++RR+   
Sbjct: 65  CKRLRQQQISLPILMLTGLNSEHDMVDGLEAGADDYLTKPFSVVELQARVRALIRRTHYA 124

Query: 122 HAQS--------------------------------------LIVTGDLSVNLDAKTVEV 143
           H Q                                        +V  +L ++     V +
Sbjct: 125 HWQDSSKDSPNVTPLQINPNWQVAQHSTHQLAPDQTSNDIPEALVFDELVISKKQHEVRL 184

Query: 144 QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN 203
            G  I+LT  E+ ++  L+ +     TK+  L  ++D   +     +   I +LR K+  
Sbjct: 185 AGANINLTPTEFSLLYCLASKPGRVFTKDELLIRVWDTDYDGYHHTVCSTINRLRNKIEK 244

Query: 204 AAGGKNYIETVWGRGYVLRENAK 226
                 YI TVWG GY  +  A+
Sbjct: 245 PKHNMRYIRTVWGVGYKFQNEAR 267


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+ ++   L+ E ++V     G  G+E  +  + D +ILD+ L  + GF V
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR  +   P+ IL+      D++ GL+ GADDY++KPF+  EL+AR+RAI+RRS   
Sbjct: 66  CRILR-QESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSERR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  + ++  G L V+  ++        ++L+ KE+ ++  L   ++  L+++M L  ++
Sbjct: 125 IGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +DV I  LR+K+        YI TV G GY
Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGY 224


>gi|330882054|gb|EGH16203.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 149

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+G AQ L+    +S
Sbjct: 3   PVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQGRAQPLLEHAGIS 62

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N LY  +D+ E   ++V 
Sbjct: 63  LDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDKVESNTLEVL 122

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I  LRKKLS        I TV G GY+L   A
Sbjct: 123 IHNLRKKLST-----ELIRTVRGVGYLLELKA 149


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   I   L+ +   V+    G++ +E  +    D IILDL L D+ G E
Sbjct: 6   RVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R  K   P+ +L+     +  + GL  GADDY++KPF+  EL+ARI A++RR   
Sbjct: 66  ICKAIR-KKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRRVSE 124

Query: 122 HAQSL--IVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A  L  IV+   GDL V++  + V  +G  I+LT  EY+++  L      T T+E  +N
Sbjct: 125 EAVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELIN 184

Query: 177 HL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +    YDG D    ++ID  +  LR+KL        YI TV G GY L
Sbjct: 185 AVLGEDYDGYD----RVIDTHVKNLRQKLETNPKEPEYIITVHGTGYRL 229


>gi|256390825|ref|YP_003112389.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256357051|gb|ACU70548.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 218

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ ++  V V   G+  +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQVLADAVATGLRRDSMAVDVVYDGDAALERIAVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +  + +ST V +L+    + D+V GL  GADDY++KPF   EL+ARIRA+ RR+ 
Sbjct: 61  DVCRHIVHSGLSTRVLMLTAAGDVADRVEGLTLGADDYLAKPFAFPELIARIRALGRRAV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + V+   + V   G  + L+ KE+ ++E+L       ++ E  L   +D
Sbjct: 121 PALPPVLERAGIRVDPSRREVMRDGRLVPLSPKEFAVLEVLMRADGAAVSSEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    + TV G GY
Sbjct: 181 ENADPFTNVVRVTVMTLRRKL----GEPPVVLTVPGAGY 215


>gi|256393251|ref|YP_003114815.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256359477|gb|ACU72974.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 123/219 (56%), Gaps = 9/219 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  LA  +  +++ E F+V      + G+ L   +++  +++D  L  + G +
Sbjct: 10  RLLIVEDDTELATLLTALIEGEGFHVDTAHDAQRGLHLGLAHDYRVMVIDRRLPGMDGLD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ++  V IL+ + +  ++VRGL  GADDY++KPF+  EL+AR+RA+ RR   
Sbjct: 70  LVAGLRRRAVTARVLILTALGAHAERVRGLDGGADDYLTKPFDVHELLARVRALDRRF-S 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A  L+  G+  ++  A+ V +  G R+ L+G+E+ +++ L+ R     ++      ++ 
Sbjct: 129 DASDLLRLGEGYLDRQARDVALADGTRVALSGREFDLLDTLAARPRAIHSRSQLRATVFP 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D     ++D ++  LR+KL     G+  + TV+G GY
Sbjct: 189 --DTAAESVVDTYVYYLRRKL-----GRQIVRTVYGLGY 220


>gi|224541447|ref|ZP_03681986.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525639|gb|EEF94744.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K +   IE+ L  E ++V         +   + ++ D +ILD+ +  + G +
Sbjct: 12  RILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDGIQ 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R  K + PV  +S  ++ +DK+ GL  GADDYI+KPFN  ELVAR+++ +RR + 
Sbjct: 72  ALEMIR-EKYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +++      S+I   DL ++ + K V V    + +T  EY+++ LL+    T  + E   
Sbjct: 131 YSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDIY 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          I V I KLR+K+        +I TVWG GY
Sbjct: 191 TKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGY 234


>gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  ++L L+ E + V  T  G  G+E      +D IILD+ L  + G E
Sbjct: 5   KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VLR LR  +IS  PV +L+    I DKV GL  GA+DY++KPF  EEL+ARIR + +   
Sbjct: 65  VLRRLR--QISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  ++I  G L +++    V  +   I LT KE+ +++ L + K+  L++E  L  
Sbjct: 123 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I+DV+I  LR K+ +    K YI T+ G GY  R
Sbjct: 183 VWGYDYLGDTNIVDVYIRYLRSKIDDKF-NKKYIYTIRGLGYQFR 226


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR    
Sbjct: 65  CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V + ++R K+     G+  I TVWG GY
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGY 226


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 123/231 (53%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD ++   ++  L+ + ++V V   G +G++  + ++   +ILDL L D+ G++
Sbjct: 3   RILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++  +    V +L+   S  DK+ G Q GADDY++KPF+  EL AR++AI+RR R 
Sbjct: 63  LCQQMQ-KETGVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     ++    L ++ + + V  +   I+LT  E+ ++  ++        +   +  
Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++D   E + +++DV I ++RKKL         I TV G GY     A  E
Sbjct: 182 VWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPAPKE 232


>gi|90424523|ref|YP_532893.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90106537|gb|ABD88574.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 238

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 121/228 (53%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   +K + F V +     D  E     + D I+LD+ L D  G +
Sbjct: 5   QILIVDDDLEIRKLLARYIKEQGFRVQLASRCADVRERIATSQIDLIVLDVMLPDGSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR  +   PV +L+ +    D++ GL+ GADDY+ KPFN  ELVARIRA++RR + 
Sbjct: 65  LCRDLRSERSKIPVILLTALKEEVDRIVGLEIGADDYLGKPFNPRELVARIRAVLRRGQD 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  +     G ++       V+ QG  I LTG E+ ++     R    L+++  L
Sbjct: 125 DRSAHGGRERYSFEGFVADPFARSLVDPQGRDIELTGAEFDLLRTFLDRPGRVLSRDQLL 184

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L  GR EP+   + IDV + +LR+KL+N +G  +  +TV   GY L
Sbjct: 185 D-LTRGR-EPDATDRSIDVLVSRLRRKLAN-SGLPHLFKTVRNGGYQL 229


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 13/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L    + V V   G + + + +    D I+LD+ L  + G+ 
Sbjct: 15  KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           V R LR  K+S  P+ +LS +  I D++ GL  GADDY+ KPF+ +EL ARI  I+RR  
Sbjct: 75  VCRELR--KLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLD 132

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S   +  ++   D+ ++ + + V  +G R+ LT  E+ ++ELL  +    + + 
Sbjct: 133 DSPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRA 192

Query: 173 MFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 193 EILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241


>gi|256851884|ref|ZP_05557272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661855|ref|ZP_05862765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934455|ref|ZP_06339712.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|297205509|ref|ZP_06922905.1| DNA-binding response regulator [Lactobacillus jensenii JV-V16]
 gi|256615842|gb|EEU21031.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547324|gb|EEX23304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301467|gb|EFA93754.1| transcriptional regulatory protein DltR [Lactobacillus jensenii
           208-1]
 gi|297150087|gb|EFH30384.1| DNA-binding response regulator [Lactobacillus jensenii JV-V16]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 117/201 (58%), Gaps = 2/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   + + + S+ ++V  T  G++ +E+ +   +D +I D+ +    G 
Sbjct: 1   MRILLAEDEKQLNRVLTVAMTSQGYDVDSTFNGQEAVEMAQRKAYDVMIFDIMMPIKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ +R +   T + +L+  S I+DKVRGL  GADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TAVKEIRASGDKTYIIMLTAKSEIDDKVRGLDDGADDYLTKPFSLKELLARLRSKERRED 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +   +L ++++ +    + + + L+ KE ++++ L L K   L+ +    H++ 
Sbjct: 121 SYTTKKVQLANLFLDVENQEASSR-NSVRLSNKETELLQYLLLNKEKKLSTQAIFTHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             DE E  I+ +++  LR+KL
Sbjct: 180 DSDEDE-DIVWIYVSYLREKL 199


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 127/227 (55%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L +  + V   + G D ++L K      ++LDL +  + G++
Sbjct: 5   KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIE--DKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V +A+R    +  + ++   +  E  DK+ GL+ GADDY++KPF+  EL+ARI+A++RR+
Sbjct: 65  VCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRRT 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  G ++ +  T  + +N + + V +   +I LT KE++++E+L   +   LT+E  L+ 
Sbjct: 125 KSLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      E + +DV I  LRKK+        +IET+ G GY    N
Sbjct: 185 IWGYEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231


>gi|163856010|ref|YP_001630308.1| osmolarity response regulator [Bordetella petrii DSM 12804]
 gi|163259738|emb|CAP42039.1| response regulator protein [Bordetella petrii]
          Length = 244

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/211 (33%), Positives = 113/211 (53%), Gaps = 16/211 (7%)

Query: 23  ENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNV+V    ED  E+ K ++   FD ++LDL L    G  + R LR    +TP+ +L+
Sbjct: 32  QGFNVFVA---EDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
             +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G 
Sbjct: 89  AKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGP 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKII 190
             +NL  +T+   G ++ +T  E+ ++++ +      L+++  +  L  GR+ E   + +
Sbjct: 149 YVLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLM-ELARGREYEAFDRSL 207

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LRK +        +I+TVWG GYV 
Sbjct: 208 DVQISRLRKLIEPNPSKPVFIQTVWGLGYVF 238


>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 241

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 126/227 (55%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  +   L+ +     +   G++ ++L +    D ++LD+ L  + G +V
Sbjct: 14  VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLPGMDGIDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LRA+R     TPV +++ ++   DK+  L+ GADDY+ KPFN  E+VAR+RA++RR++  
Sbjct: 74  LRAIR-DDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAR 132

Query: 123 ---AQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              A + I  G + ++ +A +  V     +   + LT  E++++  L+ +     ++   
Sbjct: 133 KNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRRCFSRSHL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + H     D  E ++ID  + KLR+KL   AG +  IETV G GY L
Sbjct: 193 IEHCLPESDALE-RVIDSHLSKLRRKL-QLAGQEGLIETVRGIGYRL 237


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RILL+EDD  + +++   L    + V   D   DG E   KFYE  +  +ILD+ L  +
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQV---DACTDGNEAYTKFYENTYQLVILDIMLPGM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+LR  R AK  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++R
Sbjct: 60  NGHELLREFR-AKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   A+ + V G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ 
Sbjct: 119 RSGALAKEIRV-GRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E +   +   I  LR KL      +N I+T+ G GY L E+
Sbjct: 178 IWGYDFEGDGSTVHTHIKNLRAKLP-----ENIIKTIRGVGYRLEES 219


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++  + V     G++     K    D +ILD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR+++++RR
Sbjct: 64  LCRRLR-ARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S++  GD+ ++ D   V   G  I L   EY+++E          ++E  LN 
Sbjct: 123 ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNS 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++ GRD   + + +DV I +LR KL N  G  + I TV G GY L E   + T
Sbjct: 183 VW-GRDVYIDERTVDVHIGRLR-KLLNPDGEADPIRTVRGAGYALDEQFANAT 233


>gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+   I   L+ E  +V     GE  + L      D ++LD+GL DI GFE
Sbjct: 3   RLLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV---ARIRAIVRR 118
           VLR LR   + TPV +L+      D+V GL+ GADDY+ KPF+  ELV     +      
Sbjct: 63  VLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRATL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  +    L ++   +    Q H + L  +E+ ++  L+       +++  L  +
Sbjct: 123 RTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LR KL+      + I+T WG GY   E
Sbjct: 183 WGQDGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRFAE 227


>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 230

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L++E + V     G + + L   +  D I+LDLGL D+ G E+
Sbjct: 8   ILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDGEEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR L V  +   V +LS  S   DKV  L  GA DY++KPF+  EL ARIR  +RR    
Sbjct: 68  LRTLPVW-LRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRRGGSD 126

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +S       G+LS++L+A    ++G  +HLT  E++++  L+      +T    L  ++
Sbjct: 127 GESPPSRYTFGELSLDLEAHVASLKGEDLHLTPTEFKLLAYLARHAGKVVTHSQLLREVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + + +   + + I KLR+K+ +      Y+ T  G GY L
Sbjct: 187 GKQSQGQEHYVRIHIHKLRQKIESDPARPRYLHTETGIGYRL 228


>gi|261366160|ref|ZP_05979043.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572055|gb|EFB77590.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 226

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 131/230 (56%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY-VTD--LGEDGIELCKFYEFDAIILDLGLTDIPG 59
           IL+++D++ +   +   L +  +    VTD  L  D IE  ++   + ++LD+ + ++ G
Sbjct: 4   ILIVDDEEPITALLCRTLTAAGYRCEGVTDSRLAADRIEQNRY---ELVLLDIMMPEVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++LR LR     TPV  L+  +++ED+V+GL+ GADDYI KPF   EL+AR+ A++RR+
Sbjct: 61  YDLLRFLR--PTGTPVIFLTAKAALEDRVQGLRQGADDYIVKPFAPAELLARVEAVLRRT 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++   D++V+   + V  +G  + LT KEY+++ LL   +   L ++  L  ++
Sbjct: 119 -GRGMAVLRAWDVTVDTARQQVARKGQPVELTPKEYELLLLLLRNRGRALYRDYILETVW 177

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               E +  + +D  I +LR+KL    G    IETVW  GY LR  +  E
Sbjct: 178 GLDAELDTTRTVDTHIRRLRRKL----GWDEEIETVWRVGYCLRPESPKE 223


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVCGLGYKL 225


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L +     ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|152994709|ref|YP_001339544.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835633|gb|ABR69609.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 245

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 19/233 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  I   L  + F V+  D G+ G+EL +  +   IILDL L ++ G  V
Sbjct: 9   ILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDGLTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L+       + IL+      D+V  L+ GADD+++KP +   L+AR+RA++RR    
Sbjct: 69  CRRLQTW-YQGALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRRDEKR 127

Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A  L          ++   L +N+  + VE+ G  I LT  E++++ LL+     T++++
Sbjct: 128 ANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKTVSRD 187

Query: 173 MFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                L    YDG D    + ID  I  LRKKL ++ G    I TV G+GY+ 
Sbjct: 188 EISQSLRGIEYDGLD----RSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLF 236


>gi|89069237|ref|ZP_01156604.1| two-component system, regulatory protein [Oceanicola granulosus
           HTCC2516]
 gi|89045235|gb|EAR51302.1| two-component system, regulatory protein [Oceanicola granulosus
           HTCC2516]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED + +A +I   L              +  +      +D ++LD+ L D  G 
Sbjct: 1   MRILIVEDSEDVAAAITAALGRAGMACDRAAGAREAQDYLAAETYDVVVLDIHLPDGDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR A   TPV +L+    +  +V  L +GADDY+ KPF+  EL AR+R + RR  
Sbjct: 61  TILSDLRRAGSRTPVLMLTAELEVSSRVNALDAGADDYLVKPFDLRELEARVRVLGRRGD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL  +  A+TV + G  + LT +E  ++ LL  R++  + KE  L  L+ 
Sbjct: 121 SAGSARISVGDLEFDQAARTVRIAGAAVALTRREVSLLGLLVARRDRIIAKEQILERLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++  +  +++++ +LRKKL   A     I T  G GY L
Sbjct: 181 MDEDVGLNTVELYVARLRKKL---AASSVSIVTHRGLGYQL 218


>gi|168208802|ref|ZP_02634427.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170713070|gb|EDT25252.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSKVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              ++     +I T   ++N   + V + G  + +LT KE+ ++  L        ++E  
Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 228

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G+  +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + +  +   V   G   ++     + D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALTLKPDLIIMDVMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R + V++   PV +L+   +  DK+ GL +GADDY++KPF+  EL+AR  AI+RR    
Sbjct: 74  TRRI-VSRYPIPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRRVERA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R    +L   GDL ++   + V + G  IH T  E+ ++   +   +  L +E  
Sbjct: 133 TLIANRAQYNALFKFGDLIIDPRQRLVTLNGKEIHFTPTEFSLLTTFAKHPHDVLKRETL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  +  LR K+     G ++I T+ G GY      +D
Sbjct: 193 LEEVWDWPDASGTRTVDSHVKSLRHKI-----GSSWIRTIHGIGYAFEPPDED 240


>gi|303233229|ref|ZP_07319901.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
 gi|302480619|gb|EFL43707.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4]
          Length = 223

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M I++IED+K LA +I  +L   +++      G  G        +DA I+D  L    G 
Sbjct: 1   MNIIVIEDEKNLADAIVRILSDAHYHAEAVYDGTTGYRALASNLYDAAIVDRMLPGKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ +L+  +S  DKV GL +GADDY++KPF  +EL+AR+RA+ RR  
Sbjct: 61  DLIRELRHNNNSMPILMLTARTSTTDKVEGLDAGADDYMTKPFEADELLARLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D +++L    +  + H +HL+GKE++++++L    +  ++K+  L +++ 
Sbjct: 121 DVMLDQVSFADFTLDLTTHDLTCKNHTVHLSGKEFEVLKMLLNSPSRVVSKQDLLTYVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    ++ ++  LRKKL      +  I T+   GY L E
Sbjct: 181 VTSATNENSVEAYVSFLRKKLM-YVHSRVQITTLRMLGYRLEE 222


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        + ++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233


>gi|330954699|gb|EGH54959.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + FNV + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N  E+VAR+ A++RRS+ 
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G+ +  +   +L V LDA T  ++GH      + LT  E++++  L    +   T+E  
Sbjct: 124 NGNNERHLRYQNLLVELDAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G  N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKLE-IHGVDNVLVTVRSVGYRFR 229


>gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +LL+EDD  LA  IE  LK+E FNV +  DL E   +     + D ++LD+ L D  GFE
Sbjct: 31  VLLVEDDTTLAFGIEYTLKNEGFNVSLAVDLAE-ARKALHTNKLDIVLLDVRLPDGNGFE 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+  L+  +   + V GL  GADDYI KP   +EL++RI A++RR+  
Sbjct: 90  FCKEIRAVS-KMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRRNSA 148

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   S+I + D+ +N+    V  +G  + LT  EY+++  L       L++   L HL+
Sbjct: 149 EANIASIIKSNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNTILEHLW 208

Query: 180 DGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   E  +   + V+I +LR+K+ + A     I TV G GY
Sbjct: 209 DIDGEFIDDNTLSVYIRRLREKIEDNASSPVNILTVRGVGY 249


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L SE ++V + + G+D + L +    D I+LD  L  + G E+
Sbjct: 8   VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++  + +T  PV +LS  S   D+VRGL++GADDY+ KPF+ +EL+ARIR  +RR+R
Sbjct: 68  CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRTR 127

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V   G  I L   E++++     +     ++E  L+ ++
Sbjct: 128 PASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV + +LRK L    GG + + TV G GY L
Sbjct: 188 -GRDVYVDTRTVDVHVGRLRKALCK-TGGDDPLRTVRGTGYAL 228


>gi|325264921|ref|ZP_08131649.1| DNA-binding response regulator DltR [Clostridium sp. D5]
 gi|324029910|gb|EGB91197.1| DNA-binding response regulator DltR [Clostridium sp. D5]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDDK L  +++L LK+ N        G + +       +D I+LD  L +I G 
Sbjct: 1   MHILIVEDDKELCLALQLQLKARNHTSDCCYKGSEALYYAMSNSYDLILLDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR++R   I+ PV + + + ++ D++ GL  GADDY+ KP+  EEL+ARIRA+ RR  
Sbjct: 61  SILRSIRQNHINVPVILTTALDTVNDRIDGLDCGADDYLVKPYAIEELMARIRALSRRPG 120

Query: 121 GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +T  DL    D++T++ +   + L+G+E  ++E         L +E     ++
Sbjct: 121 VLLEHQDLTFLDLCFTPDSRTLKCKDKEVQLSGREALLMEYFLRNPEKVLAREQIFVRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E   +D +I  LRK L      ++ I TV G GY L
Sbjct: 181 GTDASVEDGNLDTYIYFLRKHL-KTLHSQSVITTVHGLGYRL 221


>gi|269965392|ref|ZP_06179512.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
 gi|269830038|gb|EEZ84267.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
          Length = 243

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHKVSRATNVADAKAQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+  +           G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEVKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGY 237


>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 10/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + VY+   G++GI + K    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     LV+RI AI+RR+
Sbjct: 67  ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + + +  GDL ++ +A  V   G ++ L  KE++++ LL+ +     T+E  L 
Sbjct: 127 SSTDDVSDNKVEIGDLVIDREAYLVYQNGQKVVLAKKEFELLYLLASKPGKVYTRESILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++       + IDV I KLR+KL     G+ Y+ TV G GY
Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKL-----GETYVATVKGVGY 224


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDLG 53
           +ILL+ED++ +  +I   L+SE + V     G+  +++ + ++         D IILD+ 
Sbjct: 3   QILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIM 62

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L  I G ++ R +R    + PV +LS   +  D+V GL+ GADDY++KPF   EL+AR R
Sbjct: 63  LPGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCR 122

Query: 114 AIVRRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           A++RR R        +L+   ++S++ D   V V+   ++L+ KE++++EL         
Sbjct: 123 ALLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVW 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +E  L  ++      + K +DV I  LR+K+       +Y+ T+ G GY
Sbjct: 183 PREQILEKIWGPDYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGY 232


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+  +   I+  L    +NV   + GE+ I++    +   ++LD+ +  + G+ 
Sbjct: 9   KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDGYS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDYI KPF+ +EL ARIR++ RRS  
Sbjct: 69  VCQQLR-RESDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S+I  G L ++   K V     R+ LTG E+ ++ELL  R   ++++  
Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187

Query: 174 FLNHLYD-GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  +++ G D   + +++DV I +LR KL       + I TV G GY+ ++
Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGYLFQK 239


>gi|327480541|gb|AEA83851.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           stutzeri DSM 4166]
          Length = 231

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V  +  G DG+      + D ++LDLGL D+ G +V
Sbjct: 8   VLIIDDEPQIRKFLRISLASQGYRVLESTDGRDGLARAALEQPDLVVLDLGLPDMDGQDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RSR 120
           L  LR +    PV +LS  SS  +KVR L +GA+DY++KPF  +E +AR+RA++R  +S 
Sbjct: 68  LGELR-SWTRVPVIVLSVRSSEAEKVRALDAGANDYVTKPFGIQEFLARVRALLRLPQST 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   ++ G L ++L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 TNSPGQVLCGALCIDLAFRRVSLGERMVSLTRKEYAVLAELARHAGRVVTQQHLLKIVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + V I  LR+KL +      +I T  G GY L  +A
Sbjct: 187 PSHAGDSHYLRVVIGHLRQKLGDDPAAPRFIVTEAGVGYRLISDA 231


>gi|297155486|gb|ADI05198.1| putative OmpR family two-component response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  LA ++   L      V      +D + L    +F  ++LDLGL D+ G 
Sbjct: 1   MHILLVEDDDRLAAALTAALDRLGHQVVRAGRADDALRLKDGADF--VLLDLGLPDMDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E LR LR A  + PV +L+  S   D +RGL+ GADDY+ KPF   ELVAR+ A+VRR +
Sbjct: 59  EALRRLRRAS-AVPVIVLTARSEERDVLRGLRGGADDYLVKPFRTAELVARMDAVVRRGT 117

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  A S  ++  G + ++L A+ +EV G  + LT +E+ ++ LL+       ++E  L+ 
Sbjct: 118 RPLAGSGTVVAVGGVRIDLAARQLEVDGRPVALTRREFDVLALLAREPGVVRSREEILDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +DV I  +R K     G    +ET+ G GY L
Sbjct: 178 VWGDLLLSASRSLDVHIAGIRSK----TGCPWLVETLRGTGYRL 217


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 63  MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 122

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 123 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 181

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              ++     +I T   ++N   + V + G  + +LT KE+ ++  L        ++E  
Sbjct: 182 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 241

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 242 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 289


>gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 264

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+++ + V      E+G+ L      + ++LD+GL D  G E
Sbjct: 38  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGHE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIR+++R++  
Sbjct: 98  VLREIRQWS-SVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQAGA 156

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 157 GSTVEESVFDDGRLHIHLGLREVTLNGEAVPLSRKEYALLALLLKHAGRVVTQPQLLREV 216

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL +AA   +YI T  G G
Sbjct: 217 WGPTHEDDTHYLRILVGKLRQKLQDAAAAPHYIVTEPGVG 256


>gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L   +   ++   + V V   G + + +      D IILD+ L D  G E
Sbjct: 6   RLLVVDDEPSLQDIVATSMRFLGYQVAVAGTGREAVRIATDSHPDLIILDVMLPDFDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ +R A + + V  LS   +  DK+ GL +G DDY++KPF  EEL AR+ A++RR + 
Sbjct: 66  VMKRVRAAGVDSGVVFLSARDTPADKIAGLTAGGDDYVTKPFGLEELAARVAAVLRRVKP 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++ +   V   G  I L   EY+++  L +  N  L+++  L+ ++
Sbjct: 126 DPADDGTLRVADLELDPETYQVTRAGVPIELAPTEYKLLRHLMVNANVVLSRQQLLDAVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  ++  +I  LR+K+   A G+  I T  G GYVLR
Sbjct: 186 GTDFYGDDSVVATYISYLRRKVD--ATGEPLIHTHRGFGYVLR 226


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E F+V     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              +R    S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIR-ENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 122

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+A     S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 123 GNAAESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 183 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 230


>gi|119471571|ref|ZP_01613985.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
 gi|119445514|gb|EAW26800.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V + G++     +    D +ILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVAVLERGDEVFGYLENNHADLMILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K S P+ +L+  S   D+V GL+ GADDY+ KP     L+AR+ A++RR + 
Sbjct: 63  VCRQVR-DKFSLPILMLTAKSEDFDQVLGLELGADDYVIKPAEPRVLLARVNALLRRGQT 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
             ++   +  GDL ++  ++ V++    I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 VTKTSEELQFGDLIIDKTSRIVQLSDKEIVLTSHEFELLWLLASNAGQVLSREHVHQHMI 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              YDG D    + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLD----RTVDVRVSRIRKKLGDNSDKPFRIKTVWGQGYLFVSDAWD 229


>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 244

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 19  RVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 79  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 137

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 138 AVVAASTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 198 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 239


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|310827746|ref|YP_003960103.1| hypothetical protein ELI_2157 [Eubacterium limosum KIST612]
 gi|308739480|gb|ADO37140.1| hypothetical protein ELI_2157 [Eubacterium limosum KIST612]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD++L   I+  L+ E + V     GEDG+   +      ++LD+ L DI GF V
Sbjct: 5   ILLIEDDRSLGAVIKDFLEREGYLVQWCTTGEDGLTFLERTAVKLVLLDIMLPDIDGFTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R A+ S P+ I+S  S  +D++ GL  GADDY+ KPF+   L+A+I++ +RRS G+
Sbjct: 65  CAKIRSAQ-SLPIIIISARSGDDDQITGLNLGADDYMGKPFSIGLLLAKIKSQLRRSYGN 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                L+   DL V+  +++V +    I+LT KEY+++ LL      TL K+   + ++ 
Sbjct: 124 QAENPLLRDKDLVVDTASRSVYLNETPINLTVKEYELLVLLLENAGKTLQKDWLFDRVWG 183

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D   EP    + V I KLR+K+         I+TVWG GY
Sbjct: 184 VDCFSEPST--LTVHIGKLREKIEADPKKPRRIKTVWGVGY 222


>gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 11/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++++A+ ++  L+ + +NV V + G + +E+ K  +F  +ILDL L DI G E+
Sbjct: 4   ILIIEDEESVANVLKAYLEKDKYNVSVCNSGMEALEVYKEIDFQLVILDLMLPDIDGEEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R       + +L+  +S+ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR  + 
Sbjct: 64  CKIIRRTS-DVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINTS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
                +   G L ++ + + VE++G  I  T  E+ ++  L + K   L++E  +  +  
Sbjct: 123 EKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVFG 182

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +DG D    + IDV I  +RKK+        YI TV   GY
Sbjct: 183 IDFDGYD----RTIDVHIKNIRKKIEEDTKNPKYIITVTKVGY 221


>gi|152972720|ref|YP_001337866.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|206580779|ref|YP_002241206.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342]
 gi|238892328|ref|YP_002917062.1| DNA-binding transcriptional regulator CpxR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041695|ref|ZP_06014887.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288937842|ref|YP_003441901.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290513068|ref|ZP_06552431.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55]
 gi|330004466|ref|ZP_08304958.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3]
 gi|150957569|gb|ABR79599.1| response regulator in two-component regulatory system with CpxA,
           regulates expression of stress-related genes (OmpR
           family) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206569837|gb|ACI11613.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae 342]
 gi|238544644|dbj|BAH60995.1| response regulator of stress-related two-component regulatory
           system [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040957|gb|EEW42036.1| transcriptional regulatory protein CpxR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|288892551|gb|ADC60869.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774450|gb|EFD82455.1| DNA-binding transcriptional regulator CpxR [Klebsiella sp. 1_1_55]
 gi|328536587|gb|EGF62916.1| transcriptional regulatory protein CpxR [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSVDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q               LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQTTEAGSPTLEVDALSLNPGRQEANFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|144901321|emb|CAM78185.1| KDP operon transcriptional regulatory protein KdpE
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   + + L +  + V   D  + GIE  +    D +ILDLGL D  G E
Sbjct: 4   RILVIDDEPQIRKFMRISLTANGYEVSEADCAQTGIEAARGQNPDLLILDLGLPDQDGQE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V+ A+R    + P+ +LS  +   DKV  L  GA+DY+ KPF   EL+AR+RA++R+  +
Sbjct: 64  VISAVRDFS-AMPIIVLSVRAGELDKVEALDRGANDYVVKPFGVAELMARVRAVLRQHGA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  A  ++  G + ++L  + V   G  +HL+ KE+ ++E L+   +  LT    L  ++
Sbjct: 123 KDDAGEVVEVGAIRIDLARRLVSRDGAPVHLSKKEWDLLEHLARSPDHVLTHREILKQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   + V++ +LR+KL         I T  G GY L+
Sbjct: 183 GPAHTDDTAYLRVYVNQLRQKLETDPAQPALIITEAGVGYRLK 225


>gi|22123988|ref|NP_667411.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis KIM 10]
 gi|45439938|ref|NP_991477.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|21956728|gb|AAM83662.1|AE013607_11 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45434793|gb|AAS60354.1| two component system response regulatory protein [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 240

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +          ++  + +    G E
Sbjct: 11  KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIM-MPRKNGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 70  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 128

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 129 SEQQQNAEQGAPTLEVDCLQLNPGRQEASFEGQPLELTGTEFTLLYLLAQHLGQVVSREH 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 189 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 236


>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL S ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIR-EKFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +         D + + +          G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  R       +   I +LR+K+   +    +I+TVWG GY +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230


>gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 243

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 25/248 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M++L+IED+ ++A  + +  + E + V     GE+G  L KF E    FD I LDL L  
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEG--LAKFKEAPDSFDIITLDLNLPK 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  MDGMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALH 118

Query: 117 RRS-------------RGHAQSLIVTGDLSVNLDAKTVE--VQGHRIH-LTGKEYQMIEL 160
           RR+                A    V  D    L  KT E  + G +I  LT KE+ ++  
Sbjct: 119 RRAEVGAEAGAEQAAPETKADGFDVETD-HFKLSTKTREAYLNGKQIEGLTPKEFDLLHT 177

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           LS       ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY 
Sbjct: 178 LSKSPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYK 235

Query: 221 LRENAKDE 228
             ++  D+
Sbjct: 236 FDDSGLDQ 243


>gi|226307209|ref|YP_002767169.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226186326|dbj|BAH34430.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis
           PR4]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + L    ++V     G   +        D +ILDLGL D+ G E
Sbjct: 3   RILVVDDEPQILRALRINLTVRGYDVVTASTGAGALRAAAERPPDVVILDLGLPDMDGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA  RR   
Sbjct: 63  VLAGLR-GWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   +  + T   +V+L AKTV  +G ++HLT  E+ M+E+L   +   + ++  L  +
Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 182 WGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGY 222


>gi|182623973|ref|ZP_02951761.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177910866|gb|EDT73220.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSKVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +    ++  L    + V +   G DG+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVVEDDGSTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHSYDAIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++ GL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QIIEMLR-KKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV + +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKIDKPFDIK-LIHTVRGIGYV 218


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +     D G D I+  K    + I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYD 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R   +  STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 65  VCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +       G +++N +   +   G ++ LT KE++++ELL   +   +T++  L+ +
Sbjct: 125 TAKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I  LR+K+        YIET+ G GY
Sbjct: 185 WGYEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGY 225


>gi|254519763|ref|ZP_05131819.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913512|gb|EEH98713.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ ++  +   L  E + V V   G +  +  K +  D I+LD+ L D  GF V
Sbjct: 5   ILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTDGFSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R   ++  + P+ +L     I DK+ GL+ GADDYI+KPF+  E++ R+R  +RR    
Sbjct: 65  CR--NISGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRREEM 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  I+  ++ +N   ++V V    I L  KE++++  L    N   ++   L
Sbjct: 123 KKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSRNQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      + + +DV I +LRKKL +       IET++G GY+L+E
Sbjct: 183 DLIWGYDFLGDTRTVDVHITRLRKKLKDNFN----IETIFGVGYMLKE 226


>gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
 gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSK-PMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V V   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL097PA1]
 gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA2]
 gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL099PA1]
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R  +   P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIR-RESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ LK+E   V     G + +E+   ++   I+LD+ + ++ G   
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGISA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              +R  K + P+ ILS  S   DK+ GLQ GADDY++KPFN  ELVAR+++ +RR  S 
Sbjct: 66  TYKIREKK-NIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVSF 124

Query: 121 GHAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  + +    D   L++  + K V+V G  + LT  EY+++ELL L      + +     
Sbjct: 125 GTFEGIRKVVDLNGLTLEKETKEVKVNGEPVKLTPIEYKIVELLMLNAGRVFSIQEIYEL 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++          + V I K+R+K+   A    Y++ VWG GY
Sbjct: 185 VWKEPGYNAENTVAVHIRKIREKIEIDAKNPRYLKVVWGVGY 226


>gi|114562306|ref|YP_749819.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333599|gb|ABI70981.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 219

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+ED+K LA  I + L      V ++    +  I L +  +F AIILDL L D  G
Sbjct: 1   MRVLLVEDNKLLAQGIVMSLAKSGIQVDHLASYNQAQIAL-ENEDFSAIILDLSLPDGNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+  R   IS P+ +L+  +  + ++  L  GADDY+SKPF+  EL+AR++AI+RR 
Sbjct: 60  ADLLKQWRKNGISLPIIVLTANTDFDTRLMCLDIGADDYLSKPFDVRELIARLKAIIRRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +    G L+++     V  +   + L+ +EYQ++   +      LT+   L  L 
Sbjct: 120 HGLDNNQFSYGALNIDFARCEVHFRDELVSLSRREYQLLLEFAQSAGRVLTRNQ-LEQLT 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            G DE     I+V I  LRKK +        I+TV G GY+L E
Sbjct: 179 YGWDEVGSNSIEVHIHHLRKKTAT-----ELIKTVRGIGYILTE 217


>gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 214

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 113/215 (52%), Gaps = 10/215 (4%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           +  E + V     G + +E  +  + D IILDL L +I G EV + +R    S P+ +LS
Sbjct: 1   MTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPILMLS 59

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA---------QSLIVTG 130
              S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+               I  G
Sbjct: 60  AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIG 119

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           DL +  DA   +  G  + LT +E++++  L+      +T+E  L  ++      +V+ +
Sbjct: 120 DLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTV 179

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 180 DVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 214


>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
 gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRDDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|261342991|ref|ZP_05970849.1| hypothetical protein ENTCAN_09593 [Enterobacter cancerogenus ATCC
           35316]
 gi|288314742|gb|EFC53680.1| transcriptional regulatory protein CpxR [Enterobacter cancerogenus
           ATCC 35316]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNTDNSSPTLEVDSLSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ L +  +NV   + G++ +++ K      ++LD+ +  + G EV
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR    
Sbjct: 65  CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V + ++R K+     G+  I TVWG GY
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGY 226


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        + ++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   +   + ++   +ILD+ L  I GFE
Sbjct: 31  KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  SS  DKV GL++GADDY+SKPF   EL+AR++A++RRS+ 
Sbjct: 91  LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  T     GDL + ++   V   G  +  + KE+ +   +   +    ++E  L 
Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P   + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 210 KVW-GYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256


>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
 gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  ++++ LK+  +N+Y    G++ +E  K ++   +++D+ + ++ G   
Sbjct: 4   ILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDGITA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +  +R  + + PV +L+  S   DK+ GL+ GADDYI+KPFN  E++AR+++ +RR    
Sbjct: 64  MLKIR-EETNLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRRYMQL 122

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G  Q     IV G + +N ++K V V G  + LT  EY ++ LL        +       
Sbjct: 123 GSGQIKKDAIVIGGIELNDNSKQVTVDGKLVSLTPTEYDILRLLMEHPGQVFSPRDIYKE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++          + V I  LR+K+    G   YI+ +WGRGY
Sbjct: 183 VWKETPLGAEGSVAVHIRHLREKIEINPGEPRYIKVIWGRGY 224


>gi|28901371|ref|NP_801026.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809918|dbj|BAC62859.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 253

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +  +V        G    +   FD +ILD GL D  G ++
Sbjct: 22  ILLIEDDDDLAELVQMHLKFQGHHVSRESSVAAGRNTYQQQSFDLVILDRGLPDGDGLDI 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 82  CHHLRQRQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 141

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 142 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 201

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 202 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGY 247


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ A    +   L++E F V + + GE+ + L      D I+LD  L ++ G E
Sbjct: 7   QVLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIE 66

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R  +   A  + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRV 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++V GD++++ +   V    H I L   E++++     +     ++++ L+ +
Sbjct: 127 RPTTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L N  GG + + T+ G GY L
Sbjct: 187 WGREIYVDTRTVDVHVGRLRKAL-NQFGGDDPLRTIRGAGYAL 228


>gi|226228192|ref|YP_002762298.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091383|dbj|BAH39828.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 7/235 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L++EDD+ + H++   L+    +V      ++G+ +      DAIILDLGL D  G 
Sbjct: 6   LHLLIVEDDEHVRHALRETLQEYAADVSEAATAQEGLTIASRQTLDAIILDLGLPDSTGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + ++LR A    P+ +LS M     KV  L +GADDY++KPF+  ELVARI A VRR  
Sbjct: 66  ALCQSLR-AFTQVPILVLSAMHDENSKVALLNAGADDYVTKPFSSAELVARIHAHVRRVS 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G +  L+  GD+ ++L  +     G  + LT  E+ ++ +L  ++  T+T      
Sbjct: 125 DRRDGISPVLLRLGDVELDLQQRVATRAGQPLRLTPTEWTLLRVLVAQRGRTMTHRQLFL 184

Query: 177 HLYDGRDEPEVKI-IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            +++ R+  +  + + V +  LR+K+        +I T  G GY     A DE  
Sbjct: 185 AVWN-REYGDASLHLRVHLTHLRRKIEANPAEPRFIVTDPGVGYRFEPPAADEPA 238


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RI++++DD  +   +   L  E F V    L ED   L +       D I+LDL L    
Sbjct: 11  RIVVVDDDARIRDLLRRYLTQEGFEVL---LAEDSKALNRILTRETVDLIVLDLMLPGED 67

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR
Sbjct: 68  GLSICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRR 127

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        AQS +  G    +L  + +   G  I LT  E+ M++ L       L
Sbjct: 128 RPVMEAPGAPSREAQS-VTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPL 186

Query: 170 TKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  L  L  GR+ EP  + +DV + +LRK +        YI+TVWG GYV 
Sbjct: 187 SRDK-LAQLARGREFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVF 238


>gi|134294123|ref|YP_001117859.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134137280|gb|ABO58394.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+ E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLRQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  I++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SVLAALRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVTRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPIKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGYRIGDGA 220


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL +DD  L+  ++     E + V     G + ++       D +ILD+ + ++ GF
Sbjct: 2   VKLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPELDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+ +R AK S PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR+ 
Sbjct: 62  DTLKHIR-AKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAT 120

Query: 121 GHAQSLIVTG-DLS---VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +T  D+S   +    +TV V G  + LT  EY ++E L +     LTK+    
Sbjct: 121 QEKDDDPMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +     + +D+ I  LRKK+ N   G+  I+TV G GY+ 
Sbjct: 181 KALGRKLTMYDRSLDMHISNLRKKIGNLESGEPRIKTVRGVGYIF 225


>gi|320450181|ref|YP_004202277.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
 gi|320150350|gb|ADW21728.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01]
          Length = 220

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 122/220 (55%), Gaps = 9/220 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--PG 59
           R+LL+EDD  L  ++   L+   F V      E+  E      F A++LD+ L +    G
Sbjct: 4   RLLLVEDDPDLGRTVTQALEEHGFQVVWATSQEEAWEALWDVPFQALVLDVRLPEGEEAG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F + R LR A  + P+  L+   +++D++ GL+ G +DY++KPF   ELVARIRA++RR 
Sbjct: 64  FHLARTLREAGFTQPILFLTAKDALDDRLHGLELG-EDYLTKPFALSELVARIRALLRRG 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + + V  ++ + ++A+ V      I LT KEYQ++ELL L +    +K+  L  ++
Sbjct: 123 EVRPRRVEVG-EVVLEVEARRVLKGSLPIGLTAKEYQVLELLVLNRGRVFSKDEILERIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E  +++V++  LRKKL     G+  IET+ G GY
Sbjct: 182 GPGYEGESNLVEVYVKNLRKKL-----GEEVIETIRGLGY 216


>gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G + ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|256379016|ref|YP_003102676.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923319|gb|ACU38830.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +  ++   L      V       + +     ++FD ++LDLGL D+ G + 
Sbjct: 14  VLLVEDDPVVRSAVTRALTGMGHAVLAVGAALEALREIADHDFDLVVLDLGLPDMDGGDA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R     TPV + +      + VR L +GADDY+ KPF+ E L AR+ A++RR+R  
Sbjct: 74  LKMMR-GVCDTPVIVATARDDEAEIVRLLNAGADDYLVKPFSSEHLAARLSAVLRRTRKA 132

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A     + V   L ++LD +   + G  ++LT KE+ ++  L+ R+   + +   L +L+
Sbjct: 133 APEPGPMRVGPHLLIDLDRREARLSGRELNLTRKEFDLLAYLAAREGKVVPRAELLANLW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     + + +DV +  LR+KL   A    Y+ TV G G+ L
Sbjct: 193 NLPGRHDDQTLDVHLSWLRRKLGERAAQPRYLHTVRGVGFKL 234


>gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH
           DNA-binding domain) [Clostridium ljungdahlii DSM 13528]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  ++  I+  L+ E + VY    G +GI L    EF  +ILDL L DI G EV
Sbjct: 4   ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLMLPDIDGEEV 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              +R  +IS   + +L+   ++ DK++GL  GAD+Y++KP +  EL AR+ A+ RR   
Sbjct: 64  CSTIR--RISNVHIFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSS 121

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  I++ D  L +N D + V+++G  I +T  E+ ++ +L+  +   L+++  +  ++
Sbjct: 122 AEEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVF 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E   + IDV I  +RKK+        YI TV   GY
Sbjct: 182 GIDFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGY 221


>gi|288905305|ref|YP_003430527.1| lantibiotic biosynthesis DNA-binding response regulator
           [Streptococcus gallolyticus UCN34]
 gi|325978290|ref|YP_004288006.1| lantibiotic biosynthesis DNA-binding response regulator
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
 gi|288732031|emb|CBI13596.1| putative lantibiotic biosynthesis DNA-binding response regulator
           [Streptococcus gallolyticus UCN34]
 gi|325178218|emb|CBZ48262.1| lantibiotic biosynthesis DNA-binding response regulator
           [Streptococcus gallolyticus subsp. gallolyticus ATCC
           BAA-2069]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++ +L+ +NF+V      E  I L  F  +D I+LD+ + DI G E
Sbjct: 3   KVLVIDDDFEILKLMKNILELQNFSVTTYQKIELPIRLADFTGYDLILLDVMMPDIDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   I+TP+  +S   +  D ++GL  G DDYI+KPF+ ++LVA+I A ++R   
Sbjct: 63  LCQTIR-NHITTPIIFVSAKDTENDIIKGLNLGGDDYITKPFSIKQLVAKIEAHLKREER 121

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+     +       ++V L  K + V  +++ LT +EY ++ELLS +     T+E  
Sbjct: 122 SKQAQKAFQEFKREFSSITVYLQEKRICVNKNQVLLTNREYAILELLSSQPKKVFTRENI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             H+Y+   +   + I  ++ ++R+K S    G N I+TV G GY
Sbjct: 182 YEHVYNDDSDTLFRSISEYVYQIRQKFS--VYGINPIKTVRGVGY 224


>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G + ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+ S+NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGEFSLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   I   L  E + V   + GE  +++ C   + D II+D+ +  + G+
Sbjct: 4   KILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKMDGW 63

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++ + +R  K+S  P+ +L+  S  +D+++G + G D+YISKPF+ + L AR+ A++RR+
Sbjct: 64  QLCKEVR--KLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRT 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  + ++    ++VN  A TV + G  I L+ KE++++      +   L++E  LN+++
Sbjct: 122 TGDNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     + + ID  + KLR K+        +I T+WG GY
Sbjct: 182 NYDYYGDARTIDTHVKKLRSKMGEKG---KFISTIWGMGY 218


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 7   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 67  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 228


>gi|149374419|ref|ZP_01892193.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149361122|gb|EDM49572.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 241

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 5/241 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L+ED+   A  I+ +L     +      G+  +       +D +++D  + D+ G 
Sbjct: 1   MRIALLEDEHEQAQHIQSVLSERGHHCDSFPSGQAFLSAVLHRSYDLLVMDWQIPDMTGI 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EVL ++R       PV  L+   S  D VR L +GADDY++KP  + ELVARI A+ RR+
Sbjct: 61  EVLESVRAQLNWQIPVVFLTQRDSETDIVRALDAGADDYLAKPAREAELVARINALARRT 120

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A+   +  G   +N   +T+ + G+ + LT K++ +   L   +   LT+EM L  +
Sbjct: 121 SPDAEKESLQYGPFEINTQLRTIALHGNVLTLTDKDFDLTLFLFQNQGRLLTREMLLERV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKDETCEYLET 235
           +    +   + +D  + +LR++L         I+T++ RGY    ++ +  DET   +E 
Sbjct: 181 WGLAKDINTRTVDTHMSRLRRRLGLNPENGFRIKTIYQRGYRLEAMKASGPDETVTVMEQ 240

Query: 236 A 236
           A
Sbjct: 241 A 241


>gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC
           23134]
 gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC
           23134]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDD  L   ++  L+ + +   +   GE G++      FD  ILD+ L  + GF
Sbjct: 5   IKILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAGFDLCILDVMLPKMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +   +R      P+  L+  S  ED ++G ++GADDYI KPF+ EEL+ RI AI+RR  
Sbjct: 65  TLAEKIREQNKKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEAIMRRVG 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q     G  S +   + ++ QG    LT KE  ++++L   KN TL +   L
Sbjct: 125 EQPVTPSTQEYFEVGSFSFDYSTQKLQRQGESKKLTSKEAALLKMLCEHKNQTLERSKAL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++   +    + +DV+I KLRK L +    +  I  V G+G+ L E
Sbjct: 185 KKIWLDDNYFNARSMDVYITKLRKYLKSDENIQ--IVNVHGQGFKLVE 230


>gi|55820941|ref|YP_139383.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55736926|gb|AAV60568.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus
           thermophilus LMG 18311]
          Length = 219

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVY----VTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           RIL+I+D K +   +   L+ +N NV     V DL ++ +       FD I+LD+ + D+
Sbjct: 3   RILVIDDQKDIVQLVVKALELQNHNVTGLTSVLDLDKNSLP-----RFDLILLDIMMPDV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +    +R  ++  P+  ++  +   D V+GL  GADDYI KPF  +EL AR+ A +R
Sbjct: 58  DGLQFCHEIR-NQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGIKELQARVAAHLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        +  G+   +L A+ + ++   + LT  EY + + L+  K    +KE    H
Sbjct: 117 REHRERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTH 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   D+     +   I  +R KL     G+N IETVWG GY
Sbjct: 177 LYGYEDKGSPAAVAEHIKNIRAKLKEV--GQNPIETVWGIGY 216


>gi|331271140|ref|YP_004385849.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329127635|gb|AEB77577.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 16/235 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE----LCKFYEFDAIILDLGLTD 56
           M+IL+++D+ ++   +++ L+ E   +    L +D IE    + K Y  D IILD  L D
Sbjct: 1   MKILVVDDEISILKLLKMTLQLEGHEIL---LAKDAIEALNIIAKNYP-DIIILDAMLPD 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I GF ++  ++  K   P+ IL+  S + DK+ GLQ GADDYI+KPFN  EL+ RI  I 
Sbjct: 57  IDGFNLIGKIKRIK-DIPIIILTAKSDMNDKLLGLQLGADDYITKPFNSRELILRINVIK 115

Query: 117 RR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +R         + +I  G+L++  + K V V+   + LT KE++++  L        T++
Sbjct: 116 KRILKSKTNEDKKVIKVGELTLIPNEKKVLVKDESVTLTYKEFKVLNYLCENPGRVFTRD 175

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++    E   + +++ I ++RKKL      +NYI+T++G GY L  N +D
Sbjct: 176 ELLTKVWWYDFEGTTRAVNILIQRIRKKLGPC---QNYIKTIYGLGYKLDVNEED 227


>gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R  +   P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIR-RESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|289628311|ref|ZP_06461265.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647904|ref|ZP_06479247.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488175|ref|ZP_07006212.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298157454|gb|EFH98537.1| Copper-sensing two-component system response regulator CpxR
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|330869383|gb|EGH04092.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD+ L   +   L  E+F V  T+  E+G         D ++LD+ +  + G E
Sbjct: 3   RVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGEIEALSGRHDIVVLDIMMPRMSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R 
Sbjct: 63  VLRRIR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFL 175
                  + +I  GDL++    +    QG  + LTG E+ ++E L+      ++K+ + +
Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 182 NAL--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYLL 226


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 7   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 67  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 228


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A      L+     V V   GE G+        D ++LD+ L  + GFE
Sbjct: 3   RILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR       V +L+  +   D+V GL+ GADDY++KPF+  EL AR+RA++RR  G
Sbjct: 63  IVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGVG 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V G L ++  A+ V V G  ++LT +E+ ++  L+       T+   L  +
Sbjct: 123 PEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +          ++  I +LR K+   A    Y+ETVWG GY
Sbjct: 183 WGAGFSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGY 223


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DD  ++  I L L  E +       G   +E+ + +  D ++LD+ L ++ G+
Sbjct: 2   LKILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R  +  TP+ +L+    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR+ 
Sbjct: 62  DVCKEIR-KQHRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNT 120

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + +     IV  +L ++ D  +V  +G  + L  KE +++  L+       T+E  L
Sbjct: 121 QPIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
           + ++      + + +DV I +LR K     G   + I+TVWG GY
Sbjct: 181 DKIWGYDFVGDTRTVDVHIKRLRDKFE---GDHTWSIKTVWGVGY 222


>gi|218514582|ref|ZP_03511422.1| probable two-component response regulator protein [Rhizobium etli
           8C-3]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRILLIED+K LA ++   L        +   LG D +EL +   +DAI+LD  L D  G
Sbjct: 1   MRILLIEDEKELAAALTAALGKHGIVTDHTAHLG-DAVELTRQNPYDAILLDRRLPDGEG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              +  LR     TP+ +L+ +++ +++V GL  GADDY+ KPF  EEL+AR+RA++RR 
Sbjct: 60  LRFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRRP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G + ++    +V V    + L  +E  ++  L+ RK  T+ +      +Y
Sbjct: 120 PSLSELKITAGRMVIDPLHLSVTVGDTPLDLPRRELLVLAALARRKEKTVLRSTLEAAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E +   +D  I +LRK+L++ AG +  I  + G GY+++E
Sbjct: 180 NYEEEIQSNALDAHISRLRKRLAD-AGAEVSIHNIRGVGYLMKE 222


>gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|166999354|ref|ZP_02265195.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|243064651|gb|EES46837.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 220

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MHVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL     G + I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDTILTVRGVGYRIGDGA 220


>gi|152996674|ref|YP_001341509.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837598|gb|ABR71574.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED K +A  I    + +N+ +   + G  G EL K   +DAIILD+ L  + G 
Sbjct: 1   MKLLLVEDHKDIAGVIFDYFEIKNYVLDYANNGLQGYELAKSEHYDAIILDVMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V ++LR A I TP+ +L+   + +D + G    ADDY+ KPF+ E L +R++A+VRR +
Sbjct: 61  TVCKSLREAGIDTPILMLTARDTKDDILTGFAHFADDYLVKPFDLEILDSRLQALVRRRK 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   +  +T G+LS++++ + ++ +G R  L   +Y +++ L  +    ++K+   + L+
Sbjct: 121 GSVANRTLTFGNLSLDMNTRVLQREGGRYSLNPSQYTILKCLIQKAPDVVSKDEICDALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G +EP+ K++   I +LR  L +      Y+ TV   GY L
Sbjct: 181 -GDEEPDSKVLRSHIYQLR-SLIDRPFEHAYLRTVSKVGYRL 220


>gi|152988873|ref|YP_001347303.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150964031|gb|ABR86056.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 225

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 15/225 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD+ L   +   L  E F V  +  G            DA++LD+ L D  G E+
Sbjct: 4   LLLIDDDRELCELLGTWLVQEGFCVRASHDGAQARRALAEQTPDAVVLDVMLPDGSGLEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR      PV +LS      D++ GL+ GADDY++KP +  EL AR+RA++RRS   
Sbjct: 64  LKQLRGDHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSHPV 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN----- 176
              + +  GDLS+NL     ++ G  I LT  E +++E L  +    L K+         
Sbjct: 124 QPSAQMQLGDLSLNLTRGVAQIDGQEISLTLSESRILEALLRQPGEPLDKQALAQLALGR 183

Query: 177 --HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              LYD       + +D+ +  LRKKL +   G   I  + GRGY
Sbjct: 184 KLTLYD-------RSLDMHVSNLRKKLGSHPDGSPRILALRGRGY 221


>gi|51594428|ref|YP_068619.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809460|ref|YP_653376.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Antiqua]
 gi|108813937|ref|YP_649704.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Nepal516]
 gi|145601072|ref|YP_001165148.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
           Pestoides F]
 gi|150260864|ref|ZP_01917592.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|153948260|ref|YP_001399085.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|162420224|ref|YP_001604719.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Angola]
 gi|165926059|ref|ZP_02221891.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936215|ref|ZP_02224784.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011510|ref|ZP_02232408.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213694|ref|ZP_02239729.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398994|ref|ZP_02304518.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418962|ref|ZP_02310715.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426656|ref|ZP_02318409.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468392|ref|ZP_02333096.1| transcriptional regulatory protein CpxR [Yersinia pestis FV-1]
 gi|170026339|ref|YP_001722844.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893415|ref|YP_001870527.1| DNA-binding transcriptional regulator CpxR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218927293|ref|YP_002345168.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis CO92]
 gi|229836187|ref|ZP_04456355.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|229839923|ref|ZP_04460082.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842005|ref|ZP_04462160.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904466|ref|ZP_04519577.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|270488465|ref|ZP_06205539.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294502177|ref|YP_003566239.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|27544276|dbj|BAC54911.1| transcription factor [Yersinia pseudotuberculosis]
 gi|51587710|emb|CAH19310.1| two component system response regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777585|gb|ABG20104.1| two component system response regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781373|gb|ABG15431.1| two component system response regulatory protein [Yersinia pestis
           Antiqua]
 gi|115345904|emb|CAL18763.1| two component system response regulatory protein [Yersinia pestis
           CO92]
 gi|145212768|gb|ABP42175.1| two component system response regulatory protein [Yersinia pestis
           Pestoides F]
 gi|149290272|gb|EDM40349.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis CA88-4125]
 gi|152959755|gb|ABS47216.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
 gi|162353039|gb|ABX86987.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165915829|gb|EDR34437.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921919|gb|EDR39096.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989656|gb|EDR41957.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205096|gb|EDR49576.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962956|gb|EDR58977.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051498|gb|EDR62906.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054345|gb|EDR64162.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752873|gb|ACA70391.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696441|gb|ACC87070.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678584|gb|EEO74689.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Nepal516]
 gi|229690315|gb|EEO82369.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696289|gb|EEO86336.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706635|gb|EEO92641.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis Pestoides A]
 gi|262360256|gb|ACY56977.1| two component system response regulatory protein [Yersinia pestis
           D106004]
 gi|262364203|gb|ACY60760.1| two component system response regulatory protein [Yersinia pestis
           D182038]
 gi|270336969|gb|EFA47746.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294352636|gb|ADE62977.1| two component system response regulatory protein [Yersinia pestis
           Z176003]
 gi|320013426|gb|ADV96997.1| DNA-binding response regulator in two-component regulatory system
           with CpxA [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +          ++  + +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDIM-MPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNAEQGAPTLEVDCLQLNPGRQEASFEGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLM 228


>gi|320327470|gb|EFW83483.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330877267|gb|EGH11416.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 229

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   +   L  E+F+V  T+  E+G         D ++LD+ +  I G EV
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMMPRISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R  
Sbjct: 64  LRRIR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAV 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFLN 176
                 + +I  GDL++    +    QG  + LTG E+ ++E L+      ++K+ + +N
Sbjct: 123 PVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMN 182

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 183 AL--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYLL 226


>gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
 gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +    ++  L    + V +   G +G+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVVEDDVSTGDYLKKGLTEAGYAVDLARSGTEGLFNALEHGYDAIILDVMLPGLSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QLIEMLR-KKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV + +LR K+      K  I TV G GYV    A
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKIDKPFDIK-LIHTVRGIGYVCEPRA 223


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L +     ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|91791603|ref|YP_561254.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713605|gb|ABE53531.1| response regulator receiver [Shewanella denitrificans OS217]
          Length = 221

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 124/221 (56%), Gaps = 8/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA+ +    K   +  ++   G++ I   K ++  AI+LD+ L    G ++
Sbjct: 5   ILIVEDEIKLANLLADYFKQTEYQPHLIHHGDEVISWVKTHQPQAILLDIMLPGKNGIDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR    
Sbjct: 65  CKEIRQFS-NVPILMVTAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRG--- 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +I   D ++ LD     V  H+  + LT  E+Q+++ L+ +     T+E  + ++Y 
Sbjct: 121 --LVIENRDDTLQLDEHRFMVSFHQRGVSLTAVEFQLLKPLATKPERIFTREQLMQNMYS 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  + ID  I KLRKKL++ + GK++I++V+G GY L
Sbjct: 179 DHRIVNYRTIDSHIKKLRKKLADISQGKDWIQSVYGAGYRL 219


>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
 gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
          Length = 232

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL S ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIR-EKFYFPVIMLTAKVEDGDKIMGL-SVADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +         D + + +          G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  R       +   I +LR+K+   +    +I+TVWG GY +
Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTI 230


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
 gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
          Length = 226

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 117/218 (53%), Gaps = 3/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+K +   +   L+SE + V+ ++  + G+      + D IILDLGL D  G   +
Sbjct: 1   MIVEDEKEIRRFVRTALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLTYI 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SRG 121
           R LR    + P+ +LS  +S EDKV  L +GADDY+SKPF   EL+AR+R  +RR  + G
Sbjct: 61  RDLRQWS-AIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAAG 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+SV+L  + V+  G  +HLT  E++++  L       +T+   LN ++  
Sbjct: 120 QENPIVSFSDVSVDLINRQVKRAGEELHLTPIEFRLLTALLANAGKVITQRQLLNQVWGP 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +++  LR+KL +      ++ T  G GY
Sbjct: 180 NYVEHNHYLRIYMGHLRQKLEDDPTRPKHLLTETGVGY 217


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+   F V     G++ +       +  IILDL L  + G +
Sbjct: 5   RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGMDGRD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + P+ +L+      ++V G + GADDY+ KPF+  ELV R++A+++R+  
Sbjct: 65  VCAQIR-QHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   Q+L   G L + +DA+ VEV G  + LT KE+ ++  ++ R +   ++E  L
Sbjct: 124 MEYARNAIQTLTFPG-LEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGY 219
             +++ +   + + +D  I +LR+KL  A+     YI TVWG GY
Sbjct: 183 RDVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGY 227


>gi|161520240|ref|YP_001583667.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189353582|ref|YP_001949209.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160344290|gb|ABX17375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189337604|dbj|BAG46673.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 220

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR    + P  I++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPVKHQVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   +++ L+ EN+ +     G+  +++     ++ I+LDL +    G 
Sbjct: 5   VRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K +TPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++
Sbjct: 65  EVCRELREFK-ATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G    +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E
Sbjct: 124 QNSEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ ID  + +LR+KL + +      I TVWG GY
Sbjct: 184 SLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGY 231


>gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y +D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSK-PMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKL 228


>gi|325066517|ref|ZP_08125190.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Actinomyces oris
           K20]
          Length = 242

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D+  +  S+   L+   + V +   G + +++   Y+ D I+ D+ +  + G E+
Sbjct: 13  VLLVDDEAPIRRSLGPYLERGGYRVLLASDGVEALDILASYQVDIIVSDVLMPRMDGREL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R     TP+ +L+ + +  ++V  L  GADDY+SKPF+  EL +RIRA++RR+RG 
Sbjct: 73  VRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRRTRGV 132

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           AQ L     +  G L +   ++ V + G  + LT K   +++ L        T++  L  
Sbjct: 133 AQPLTSAARLTAGQLILERTSRRVTLSGREVTLTPKATMLLDYLMSHPGELHTRDALLAS 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+        + +D  I ++R+ L + A    YIETV   GY  R   +
Sbjct: 193 LWGIDFATSTRAVDHRIREIRQALGDDATHPTYIETVPSVGYRFRAEVR 241


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 240


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQ 234


>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++  +    V +L+ ++   DK++G + GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEMQ-DRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  GDL ++   + V +   +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGHEE 233


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + ++EDD  +A  +   L+   F V     G   I   +    +  +LD+ +    G E+
Sbjct: 5   VFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGLEI 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R +R ++    TPV  L+  +S  DK+ GL  GADDYI+KPF+  EL+ARI+A++RR  
Sbjct: 65  CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    +++  GD+ ++  A T+ V+G+ +  T  E++++E L+       T++  L+ ++
Sbjct: 125 RPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +DV++ ++R+K+        Y++TV G GY
Sbjct: 185 RETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGY 224


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +   +    K E F V+  + G +G+E+ K    + +ILD+ +  + G+
Sbjct: 1   MNILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLDGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + +R ++K+  P+ +L+  S  EDK+ G + GADDY++KPF+ + LVA+++A+++RS
Sbjct: 61  KVCKNIRELSKV--PIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRS 118

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++I    L +N  +  V++ G  I L+ KEY ++      K+  L+++  L+
Sbjct: 119 IIDINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLD 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    +  ++ +D  I +LR+KL N A   +YI TV G+GY    N
Sbjct: 179 RVWGFDYDGGLRTVDTHIKRLREKLKNKA---DYIVTVRGKGYKFEVN 223


>gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           RIL+++D++ +   +   L +  ++V+V   G + +E+ K ++ D I+LDL +  ++ G 
Sbjct: 7   RILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R      P+ +LS MS    KVR L  GADDY++KPF  EEL+AR+RA +RRS+
Sbjct: 67  DVCVEVRHRGQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLRRSQ 126

Query: 121 G-------HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       L+++ D  L ++L  + V+   + + LT  E+++++ L L     LT 
Sbjct: 127 SNEGEEIQQVPELLISEDGYLYMDLARRLVKAGNNEVRLTPTEFELLKQLMLCAGKVLTH 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              L  ++      E   + V++ +LR K+        YI T  G GYV R
Sbjct: 187 RALLRAVWGPEYGEEADYLRVYVRQLRLKVEAKPSHPRYIITEPGIGYVFR 237


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G +G +L   +  D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRG-S 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           H           +I   DL +    + V V    + LT KE++++ L++       ++  
Sbjct: 122 HVPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 182 LLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|225022854|ref|ZP_03712046.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682198|ref|ZP_07405002.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|224944378|gb|EEG25587.1| hypothetical protein CORMATOL_02900 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658671|gb|EFM48174.1| response regulator receiver domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 222

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD  +A  I   L+S  ++  VTD G     + +   +  +ILDLGL ++ G +
Sbjct: 3   RILIAEDDNGIAEFIARGLESAGYSCDVTDNGPVAFGMARSGAYQLMILDLGLPNMDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR    + P+ +L+  +++ED++R L+ GA+DY+ KPF   EL+AR+R  +  S  
Sbjct: 63  ILEQLRSLGTTLPIIVLTARTALEDRLRTLEGGANDYMPKPFQFAELLARVRLRLAESNP 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G   + I    + ++L A  V +      L+ +E  ++E L       L++   L+ 
Sbjct: 123 DMNGANSTQIHHNGMVLDLRAHRVLIDDKWRDLSRRELGLLETLMRHPRQILSRSQLLSQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   ++DV+I  LRKK+     G + +ETV G GY L+
Sbjct: 183 VWGMDFDPGSNVVDVYIRSLRKKI-----GADKVETVRGSGYRLK 222


>gi|221200480|ref|ZP_03573522.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206160|ref|ZP_03579174.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221174172|gb|EEE06605.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221179821|gb|EEE12226.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR    + P  I++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLASLRRRDETLPTIIITARDGVRDRIAGLDSGADDYLVKPFELEELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPVKHRVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  + ++   DL  +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRILQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +     GK  ++TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-GKPLLQTVHGVGYRLAEG 223


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +    D IILDL L    G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREVR-KNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRR-HD 120

Query: 122 HAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +A++ +V          G L+++ DA  V  +G  I LT +E++++  L+      +T+E
Sbjct: 121 NAKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 181 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLR 230


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L+   + V     G   +EL +    D I+LDL +  + G+ +
Sbjct: 4   ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+   A    P+ +LS  S   DKV GL+ GADDYI+KPF+  ELVAR+ A +RR +
Sbjct: 64  CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++++I+ G L ++ +  ++E+ G + +L  KE++++  L+ +     ++  
Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L   ++     + + +DV I ++R+KL      + YIET  G GY
Sbjct: 184 LLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGY 229


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 125/232 (53%), Gaps = 5/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+I+DD ++   ++  L+ + ++V V   G +G++  + ++   +ILDL L D+ G+
Sbjct: 2   LRILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + ++  +    V +L+   +  DK++G Q GADDY++KPF+  EL AR++AI+RR R
Sbjct: 62  DLCQQMQ-KETGVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGR 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  S  V    S+ +D  T EV   R  I+LT  E+ ++  ++        +   + 
Sbjct: 121 TRTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++D   E + +++DV I ++RKKL         I TV G GY        E
Sbjct: 181 EVWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPTPKE 232


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +E+ L++E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 7   IRILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+  + +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A +R   
Sbjct: 67  EVCRMLKKTE-NVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V G   ++   K ++ +   + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 126 PNLFGKVVVGPFQIDDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGY 219
                E  I++V+I  LR KL++    KN+  I T+   GY
Sbjct: 186 YDFGGEENIVEVYIRSLRDKLND----KNHQIIRTLRRSGY 222


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 125/235 (53%), Gaps = 11/235 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ +L   +   L    F V     G++       +  D ++LD+ L    G ++
Sbjct: 4   ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSGVDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +++ +    DK+ GL+ GADDY++KPF+  E++AR+RA++RR    
Sbjct: 64  TRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLDKQ 123

Query: 123 AQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  +          G+L+++ D   V+ QG  + LT KEY+++  ++ R+   L +E  
Sbjct: 124 QEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRETI 183

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++ G D   P+ +++D+ +  LR K+ +      +++TV G GY   + A D
Sbjct: 184 LHGVW-GYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFDDQAVD 237


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L+  +   L++E + V   + G++     +  + D ++LD  L  + G E
Sbjct: 3   KVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   PV +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI+RR
Sbjct: 63  LCRRLR-ARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRR 121

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R    S ++ +GD+ ++ +   V   G  IHL   E++++E L        ++E  L+ 
Sbjct: 122 ARPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDG 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + + +DV + +LRK + N    K+ I TV G GY  
Sbjct: 182 VWGHDVYVDERTVDVHVGRLRKAI-NRGKVKDPIRTVRGAGYAF 224


>gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 6   RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 66  VCKAIR-AESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 125 EPAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGY 222


>gi|300789850|ref|YP_003770141.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799364|gb|ADJ49739.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  +++  L++E  +V     G  G++L     FD ++LD+ L  + G+ V
Sbjct: 1   MLVVDDEPGVRKALQRGLRAEGMDVVTAADGPTGLQLASTGSFDVVLLDIMLPGLSGYRV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR   ++TPV ++S      D+  GL  GAD Y+ KPF+   LVA++RA++RR+   
Sbjct: 61  LERLRKDGVTTPVLLVSAKDGEIDQADGLDLGADGYLVKPFSFVVLVAQVRAVLRRAGPE 120

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A +  +  G L+V+   + V      + L+ +E+ ++E+L  R  T +TK+  L  ++  
Sbjct: 121 AGRGTLRLGALAVDRGLRQVHWHDEEVGLSPREFALLEVLVGRAGTVVTKDELLRAVWGE 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                  +++V++  +R+KL +A G    + TV G GY+  +   DE  
Sbjct: 181 EQAVTRNLVEVYVGYVRRKL-DAVGAGALLRTVRGHGYLASDAELDEVI 228


>gi|294817971|ref|ZP_06776613.1| Response regulator receiver [Streptomyces clavuligerus ATCC 27064]
 gi|294322786|gb|EFG04921.1| Response regulator receiver [Streptomyces clavuligerus ATCC 27064]
          Length = 209

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 4/210 (1%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +A  +E+ L+ E   V V   GE  +E    Y++DA++LD  L  + G EV R +   ++
Sbjct: 1   MARVLEIGLRREAIAVDVAHDGEAALERLTVYDYDAVVLDRDLPGVHGDEVCRRIVAMRL 60

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
              V +L+    + DKV GL  GADDY++KPF+  ELVAR+RA+ RRS      ++   D
Sbjct: 61  ECRVLMLTAAGRLGDKVEGLGLGADDYLAKPFDFPELVARLRALYRRSPMAHAPVLTFAD 120

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L+ +   + V   G  + LT KE  ++ELL       L+ E  L+  +D   +P    + 
Sbjct: 121 LAFDTHRRRVLRAGREVRLTPKELAVLELLMRADGGVLSAEHLLDKAWDAYADPLTNAVR 180

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +  LR+KL    G    + T    GY L
Sbjct: 181 LVVHTLRRKL----GEPRLVHTAISAGYYL 206


>gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
 gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
          Length = 235

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           ++ILL+ED+++LA  I+  L  E ++      G++ + L   +   FD I+LD  L    
Sbjct: 3   LKILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R  +   P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR
Sbjct: 63  GITVARRIR-KESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERR 121

Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +  A      Q+ +V G+L +++    V+V G  I LT KE+ ++  L        T++
Sbjct: 122 LQREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++    + +  ++DV+I  LR KL     GK  I TV G GYVLR +
Sbjct: 182 DLLNEIWGYEYDGQTNVVDVYIRTLRNKLDVCGKGK-MIATVRGLGYVLRTD 232


>gi|256378388|ref|YP_003102048.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922691|gb|ACU38202.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 9/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            R+LL+EDD+ LA  +   L++E + V V   G+ G+ L     +D +++D GL  + G 
Sbjct: 13  FRLLLVEDDRELAELLAESLRAEGYAVDVAADGQRGLHLGLTRPYDVVVIDRGLPSLDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR   +     +L+   ++ D++ GL +GADDY+ KPF+ +EL AR+RA+ RR+ 
Sbjct: 73  DLLVRLRSRAVRARALLLTAQGTVHDRIDGLDAGADDYLVKPFDLDELSARLRALCRRAL 132

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                L I  G L V    + V   G R+ LT +E+ ++ +L+   +T  T+      ++
Sbjct: 133 ELTDVLRIGAGHLDVG-QREVVLPHGGRLGLTTREFGLLRVLATHPDTVHTRASLRRAVF 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P   I+D ++  LR K      G++ + TV G GY L
Sbjct: 192 HDTTSP--SIVDTYVYYLRAK-----AGRSVVHTVPGVGYRL 226


>gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 251

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDD-KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+IL+IEDD +A A+  +   ++     + +D GE G+ +     +D I++D  L    G
Sbjct: 27  MKILIIEDDLEAAAYLTKAFREAGIVADHASD-GEAGLFMGSENTYDVIVIDRMLPRRDG 85

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR 
Sbjct: 86  LSVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 145

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 146 GTPEQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 206 WDYHFDPQTNVIDVHVSRLRSKIEKDF-SQPLLKTIRGAGYMIKDEG 251


>gi|326692618|ref|ZP_08229623.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 210

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 109/202 (53%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ +L   ++  L  E + V     G+ G+ L      DA++LD  L    G  V
Sbjct: 4   VLIIEDEMSLQFYLKNELTFEGYTVLQAFDGQQGLALLASETGDAVLLDWMLPKKSGMAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + PV +++  S ++DKV GL +GADDY++KPF  EEL+AR+R ++RR    
Sbjct: 64  LRHVRQTNQTLPVILMTAKSELDDKVMGLDNGADDYLTKPFETEELLARLRVVLRRQVAP 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q+     DL++N     V+     I LT +E+ ++  L   +   ++++  L+H++   
Sbjct: 124 VQTTFEVADLTLNTTTHRVQRGDQLIALTQREFDLLAFLMQHEGQVVSRDAILDHVWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNA 204
              +   +DV I  LR+K+  A
Sbjct: 184 FAGQYNTVDVNIHHLRQKIELA 205


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +  + +L L+   ++V   + G + IE  +    DA++LD+ L  + G  
Sbjct: 9   RILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVMLPGLDGIS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+ ++S      D V GL++GADDY++KPF+ + LVAR+RA++RR+  
Sbjct: 69  VCRRIRETSL-VPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRRAVS 127

Query: 122 HAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +    T        GDL ++ +A  V   G  + LT  E +++   +      L++  
Sbjct: 128 DPERPAPTSGAGVESFGDLELDREALEVRRGGSTVQLTPTELKLLIEFANNPGVVLSRST 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++D     + +++DV + +LR K+     G + IETV G GY LR
Sbjct: 188 LLQRVWDYEWGGDGRLVDVHLQRLRTKI-----GADRIETVRGFGYKLR 231


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +  +I++ L ++ +NV+  + G++G+E+    +    I+D+ +  + G  +
Sbjct: 5   ILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 65  TMRLR-ETYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQI 123

Query: 119 -SRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            +  H+        +  V G L ++ D K V V G+++ LT KEYQ++ LL        +
Sbjct: 124 LNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVYS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E     +++ +     + I V I KLR+K+       +YI+ VWG GY
Sbjct: 184 SEQIYEQVWNEK-AINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGY 231


>gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1]
 gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L+++  +     LG   ++  +    D IILD+GL DI GFE 
Sbjct: 4   ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGLPDISGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R    
Sbjct: 64  CRQLR-RFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAPR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+   V     ++     +  +   + LT  E+++++ L  +     ++E  L+ L    
Sbjct: 123 AEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDALGVAS 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    + ID  I  LR KL   A G   I+T  G GY
Sbjct: 183 DVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGY 219


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V  +  G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFT 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           + + LR    +   P+ +L+ +S   +KV G  +GADDY++KPF  EE++AR+RA++RR 
Sbjct: 64  ICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRA 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + GH + ++  G L++  +   V   G  I LT  E++++  L  R   T++   
Sbjct: 124 DRIPATAGH-REILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++    + +++ I V +  LR KL        YI+TV+G GY L
Sbjct: 183 ILKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCL 230


>gi|296117303|ref|ZP_06835893.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976069|gb|EFG82857.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 239

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+     V     G++         +  +ILDL L    G +V
Sbjct: 7   ILIVDDDREIRELLARFLERNELRVTTARDGQETRRKWTGGHYQLVILDLMLPGESGLDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +L+ MS   D++ GL+ GADDY+ KPFN  EL+AR+RA++RR   +
Sbjct: 67  ARWLRT-QADVPIIMLTAMSDDTDRIIGLELGADDYVPKPFNPRELLARVRAVLRRVNDN 125

Query: 123 AQSLIVTGD-----LSVNLDA---KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                V            LD    + +   G  + LTG EY ++  L  R N  LT++M 
Sbjct: 126 PDPRSVPARRLMRFAGWELDTVRRRLLNPTGTEVPLTGGEYDLLLALLERANRVLTRDML 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + L   +  P  + IDV I +LR+KL +       I+TV G GYVL
Sbjct: 186 FDMLRGRQAGPFDRAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ASDSATFGTLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+         I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEEVPSSPTLIRTVRGVGYRL 221


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +AH +  ++KS  F       G +   L   ++FD I+LD  L    GF +
Sbjct: 9   ILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLPGEDGFSI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++ S P+ +L+ +    D++ GL+ GADDY++KPFN  EL+ARI++I+RR+   
Sbjct: 69  CRRLRSSR-SIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRASFS 127

Query: 123 AQSLIVTGDLSV---NLDAKT---VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q       ++     +D K+    + +G  + +T  E+ ++       N  LT+E  L+
Sbjct: 128 QQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLTREQLLS 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + G   P  + ID  I ++R+K+        +I+TV   GY+ 
Sbjct: 188 MTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 232


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE ++V   + GE+ + L      D +ILD  +  + G E
Sbjct: 7   QILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIE 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  + +   PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRI 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A    +   D++++ +   V      + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L+   GG + I TV G GY L
Sbjct: 187 W-GRDIFVDTRTVDVHIARLRKALTQ-HGGDDPIRTVRGAGYAL 228


>gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     GE+G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V + G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +   L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKLAV 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 129/230 (56%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK E + V   D  +   E  +  E D ++LD+ +  + G ++
Sbjct: 4   ILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNGLDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+     P+  +S  S   D++ GL+ GADDY++KPF+  ELV RI+ I+RR+   
Sbjct: 64  CKKVRMTS-EVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTNAV 122

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q    +++   DL + ++ + V+V    + LT KEY++++ L   K   L+++  + ++
Sbjct: 123 VQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKIIQNI 182

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               YDG D    + +D  I +LRKKL +    K  I+TVWG GY ++E+
Sbjct: 183 WGYEYDGYD----RNVDDTIKRLRKKLKDIE-SKVKIQTVWGYGYKVQED 227


>gi|260577488|ref|ZP_05845431.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           jeikeium ATCC 43734]
 gi|258604387|gb|EEW17621.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           jeikeium ATCC 43734]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ALA+++ + L++  +NV V       I++   +   A++LDLGL D+ G E
Sbjct: 5   KILMVEDDVALANAVLVTLRARGYNVQVATTATKAIQVASKWHPQAVLLDLGLPDLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR      PV ++S       K+  L  GADDY++KPF+  EL+AR+RA +RR+ G
Sbjct: 65  VLRALR-NWTDIPVLVVSARHDESGKINALDEGADDYVTKPFSVGELLARLRAALRRAPG 123

Query: 122 HA---QSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + ++ T D  V  +L  + V V G  +HLT +E+ + E +   + T +TK   L 
Sbjct: 124 APIPEEPVVETSDGRVVFDLPNQRVTVDGQDVHLTPREWGIAEHMIRHRGTLVTKVELLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    + E   + V++ +LR KL        Y  T  G GY L
Sbjct: 184 AVWGQAYKKETNYLRVYVSQLRSKLEVDPSNPQYFTTETGIGYRL 228


>gi|239944331|ref|ZP_04696268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990784|ref|ZP_04711448.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 220

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN-KEELVARIRAIVRRS 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+    +      + RR 
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L ++  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 121 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL     G   I TV G GY L
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKL-----GAATIRTVRGAGYRL 217


>gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 232

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 230


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSE 237


>gi|83747895|ref|ZP_00944927.1| KdpE [Ralstonia solanacearum UW551]
 gi|207722814|ref|YP_002253249.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|207741860|ref|YP_002258252.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
 gi|83725428|gb|EAP72574.1| KdpE [Ralstonia solanacearum UW551]
 gi|206587998|emb|CAQ18579.1| response regulator protein [Ralstonia solanacearum MolK2]
 gi|206593245|emb|CAQ60172.1| response regulator transcription regulator protein [Ralstonia
           solanacearum IPO1609]
          Length = 234

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L++E   V+  D  + G+      + DA+ILDLGL D  G  +
Sbjct: 12  VLVIDDEPHIRRFVRAALEAEGCEVFEADRVQRGLIEAGTRQPDAVILDLGLPDGDGMSL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   EL+AR+R ++RR   R
Sbjct: 72  IRDLRTWT-EVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    SLI  GD+ V+L  + V   G  +HLT  EY+++ +L  R+   +T    L  ++
Sbjct: 131 GEDGGSLIAFGDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGAVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGY 230


>gi|313807086|gb|EFS45581.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
          Length = 236

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R  +   P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIR-RESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVCGIGY 227


>gi|313115311|ref|ZP_07800786.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622342|gb|EFQ05822.1| putative KDP operon transcriptional regulatory protein KdpE
           [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 247

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+  +   IE +L + ++   V      G+ L   +  D +ILDLGL D  G 
Sbjct: 9   FKVLIVEDEANICSFIETLLTTNDYQALVAHTCTMGLTLFASHNPDLVILDLGLPDRDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +R +R  K  TP+ +LS  +   DK+  L  GA+DYI+KPF+  EL+AR+RA +R +R
Sbjct: 69  EFIRTVR-QKYMTPIVVLSARTDEMDKIEALDLGANDYITKPFSTGELLARVRAALRLNR 127

Query: 121 ------GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 G+A +       + +N D + V V    I LT  EY ++  LS      +T   
Sbjct: 128 YSAMHGGNAPAGEFRAQGMRINYDRRKVFVDEQEIKLTQTEYNIVAFLSQHAGRVMTYAA 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLRENAK 226
            +  ++   D    K + V +  +RKKL +  G   YI    G GY ++ E+A+
Sbjct: 188 IVKAIWGDTDIGSTKKLQVNMANIRKKLGSRPGSNAYILNELGVGYRMIDEDAR 241


>gi|312198212|ref|YP_004018273.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229548|gb|ADP82403.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 218

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  LA ++   L+ E F V V   GE+ +E     E+D ++LD  L  + G 
Sbjct: 1   MRVLVVEDDAPLADAVVRGLRRERFAVDVAYGGEEALEKIGVVEYDIVVLDRQLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +   + +T + +L+    + ++V GL  GADDY+ KPF+  ELVAR+RA+ RRS 
Sbjct: 61  VVCEKIVAERTATRILMLTASDDVSERVEGLMLGADDYLPKPFDMRELVARLRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   D+ ++   +T    G  + LT +E+ ++E L L +   L+ E  +  ++D
Sbjct: 121 HATVPVLEWRDICLDAGRRTARRGGRDLRLTNREFAVLEALMLAEGAFLSAEQLMERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R +P    + V I  LR+KL++       I T    GY L
Sbjct: 181 ERLDPFSNAVRVTILTLRRKLAD----PPVIATAPAVGYRL 217


>gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 225

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   ++ +L+   + V     G + + L +   FD I+LDL L  + G E
Sbjct: 3   KILVVEDDPKINKMVQTLLRKNEYEVVAAFSGTEALLLLEKESFDLILLDLMLPGLSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           +L  +   +   P+  +S    +  K+  ++ GADDYI+KPFN EEL+ RI A++RR ++
Sbjct: 63  ILAKIN-EEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      ++    DL ++ +   V +    I LT KEY ++ELL        TK+     
Sbjct: 122 GRTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFES 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + +++ V +  LR KL +   G+ YI+TVWG GY +++N
Sbjct: 182 VWSEEYIMDERVVTVHVSNLRNKLKH---GEEYIKTVWGIGYKMQDN 225


>gi|237749392|ref|ZP_04579872.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
 gi|229380754|gb|EEO30845.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL IED+  +   ++L L++E + V+  D  + G+        D ++LDLGL D  G 
Sbjct: 5   LRILTIEDESNIRRFVKLALETEGYEVFEADGLKRGLIEAGTRRPDLVVLDLGLPDGDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           + +  LR      PV +LS  +S  DK+  L +GADDY+ KPF   EL+AR+RA +RR  
Sbjct: 65  DFITDLRNWS-DIPVIVLSARNSEHDKISALDAGADDYLEKPFGAGELLARVRAQLRRQQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R      I   D+ ++   + VE  G  +HLT  EY+++  L+ + +  +T +  L  ++
Sbjct: 124 RSGNDPTIRFADVCIDPVRRLVEKNGEPVHLTPIEYRILTFLASQPDRVVTHQQLLKAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 ++  I V +  LRKK+   A    ++ T  G GY    ++K
Sbjct: 184 GPGHTEDMHYIRVHMANLRKKVEKNASMPKHLVTEAGIGYRFVPDSK 230


>gi|229514510|ref|ZP_04403971.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229348490|gb|EEO13448.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
          Length = 192

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/185 (38%), Positives = 106/185 (57%), Gaps = 5/185 (2%)

Query: 37  IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGAD 96
           +   K  +F A+ILDL L D+ G EVLR +R A  + PV IL+    I D+V+GL  GAD
Sbjct: 11  VTALKTEQFTALILDLTLPDMDGLEVLRQIRRAGYTLPVMILTARDDISDRVKGLDGGAD 70

Query: 97  DYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQ 156
           +YI KPF  EEL+AR+R I+RRS G A+ LI  GDL ++L  + +      + LT  EY+
Sbjct: 71  EYIGKPFALEELLARLRLIIRRSSGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYK 130

Query: 157 MIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
           ++  L  +    ++KE+    L+   +      I+V I  LRKKL +     N ++ V G
Sbjct: 131 ILASLMTQAGRVMSKELLQQALHGWDEGSSDNAIEVHIHNLRKKLPD-----NLVKNVRG 185

Query: 217 RGYVL 221
            GY++
Sbjct: 186 VGYMI 190


>gi|284028260|ref|YP_003378191.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283807553|gb|ADB29392.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 222

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +E  L+S  F   V   GE   +      +D ++LDLGL  + GF 
Sbjct: 3   RILIAEDEQRIASFVERGLRSNGFVTTVVADGETAYQEGVSGGYDLLLLDLGLPRVDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR A+++ PV IL+    + D V GL+ GADDYI+KPF  EEL+AR+R  +R    
Sbjct: 63  VLRRLREARVTMPVVILTARDGVRDTVAGLEGGADDYIAKPFAFEELLARVRLRLRSDGS 122

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A + I+  GDLS++L  +   V G  + LT +E+ + E+     +  L++E  L+ ++
Sbjct: 123 GTADANILQVGDLSLDLRTRRASVDGRTVDLTAREFLLAEVFCRHPDQVLSREQLLSQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P   ++DV+I  LR+KL     G + I+T+ G GY LR
Sbjct: 183 GFDFDPGSNVVDVYIRYLRRKL-----GPDRIQTIRGMGYRLR 220


>gi|254410363|ref|ZP_05024142.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182569|gb|EDX77554.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 220

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 105/217 (48%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD ALA ++   L  +N++V V + GE G        +D I+LD+ L  + G  + R 
Sbjct: 1   MEDDIALAEALTEALVDQNYDVDVVNDGEAGWRQITSLYYDLILLDVMLPKLDGISLCRR 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR       + +++ + +  DKV  L +GADDY+ KP +  EL+ARIRA++RR       
Sbjct: 61  LRSNSYHGSILMITALDTSTDKVNSLDAGADDYVVKPVDLPELLARIRALLRRGGCSVPP 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
           ++    L ++     V      +HLT KEY  +EL        + +E  + HL+     P
Sbjct: 121 VLEWERLQLDPSCHEVIYNQQPVHLTPKEYSCLELFLRNSQRIINREFIIEHLWSAEATP 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   I  LR KL       + IETV   GY L+
Sbjct: 181 FEDTVKAHIKSLRHKLKAVGAPDDLIETVHSVGYRLK 217


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E+ ++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  +
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTE 241


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D++++   +   L+ + + V     G + +   +   FD ++LD+ L  + G E
Sbjct: 7   RILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ S P+ +L+  S   DKV GL+ GADDYI+KPF+  E  +R++A +RRS  
Sbjct: 67  VCRRLR-SRSSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125

Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    G L V     + D +TV ++G  I  T  E++++  L+       T++M L 
Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + IDV I  LR+K+   A    Y+ TV G GY  R+ 
Sbjct: 186 RVWGDSAYRDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRFRDT 233


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   +   L+   F V     G   +E       D I+LD+ +    GF
Sbjct: 7   VKVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAPDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR A  S  +  L+   ++ D++ GL +G DDY++KPF+ EE+V R+RAI+RR R
Sbjct: 67  TVARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMR 126

Query: 121 GHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ  +  G     DL ++  A TV   G  IHL+  E+ ++  L +     ++K   L
Sbjct: 127 -PAQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQIL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D   E E +I++ +I  LR+K+   A G   I T+ G GY L+
Sbjct: 186 DRVWDYDFEGESRIVESYISYLRRKID--AEGPPLIHTLRGVGYRLQ 230


>gi|328555084|gb|AEB25576.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           TA208]
          Length = 220

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL ++D+K +   I  +L+ +   V + +  ED   L  F  +D I+LD+ +    G E+
Sbjct: 4   ILAVDDEKDILVLIRNILQRDQHTVTILEKAEDQ-SLDFFQGYDLILLDVMMPGTDGIEL 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R +R   + +P+  L+  S  E  V+GL +GADDYI+KPF  +EL+AR+ A VRR SR 
Sbjct: 63  CRRIR-PLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHVRRESRE 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q+  +      + D K V +   ++ LT  EY+++E L+  KN T ++E     +Y  
Sbjct: 122 KRQTKRLISGFMFDFDNKEVWIDDRKLPLTKNEYKIVEFLAQHKNRTFSREQIYEEVYGL 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +     I  FI  +RKK      G + I+TVWG GY
Sbjct: 182 DGDALYSTITEFIRTIRKKCKEH--GADPIKTVWGVGY 217


>gi|306831386|ref|ZP_07464545.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|304426446|gb|EFM29559.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++ +L+ +NF+V      E  I L  F  +D I+LD+ + DI G E
Sbjct: 6   KVLVIDDDFEILKLMKNILELQNFSVTTYQKIELPIRLADFTGYDLILLDVMMPDIDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   I+TP+  +S   +  D ++GL  G DDYI+KPF+ ++LVA+I A ++R   
Sbjct: 66  LCQTIR-NHITTPIIFVSAKDTENDIIKGLNLGGDDYITKPFSIKQLVAKIEAHLKREER 124

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+     +       ++V L  K + V  +++ LT +EY ++ELLS +     T+E  
Sbjct: 125 SKQAQKAFQEFKREFSSITVYLQEKRICVNKNQVLLTNREYAILELLSSQPKKVFTRENI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             H+Y+   +   + I  ++ ++R+K S    G N I+TV G GY
Sbjct: 185 YEHVYNDDSDTLFRSISEYVYQIRQKFS--VYGINPIKTVRGVGY 227


>gi|182435528|ref|YP_001823247.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776165|ref|ZP_08235430.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464044|dbj|BAG18564.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656498|gb|EGE41344.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ +      E   F  I+LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAVLARHGFQVVHARNGEEALRALLPAEKEPFGVILLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + +TPV +++  + +  ++ GL  GADDY++KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVAR 119

Query: 118 RSRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R+     +          G +++ L  + V V G  + LT KE+ ++ LL+ R      +
Sbjct: 120 RTTSGEDTAPTPVAALRLGPVAIELPTRRVSVDGAEVQLTRKEFDLLALLAQRPGVVFRR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 EQIISEVWRTSWEGTGRTLEVHVASLRSKLRLPA----LIETVRGVGYRL 225


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   +   L+ E F+V   + G   +++ +    D IILDL L D+ GF
Sbjct: 1   MKILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDK--VRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ R LR  K +  + I+   +  ED   V GL+ GADDY++KPF+ + LVAR++ I+RR
Sbjct: 61  DICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRR 120

Query: 119 SRGHAQSLIVTGD-----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           ++    +                 L +  +   V V G ++  +  E+ ++  L+     
Sbjct: 121 AQEAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGR 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGYVLREN 224
             +++  +N +         + IDV I  +RKKLS AAG    +N IETV G GY + E+
Sbjct: 181 VFSRQQIINAIKGDSYPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRMTED 240


>gi|264678818|ref|YP_003278725.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209331|gb|ACY33429.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 214

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +A  ++  L+ + F V V           K   FD  +LDLGL D  G  +L   R   +
Sbjct: 2   VASGVKAGLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDEDGLHLLARWRRQGL 61

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
             PV +L+   +++ ++ GLQ+GADDY+ KPF+  EL AR+ A++RR+ G     IV GD
Sbjct: 62  ELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAAGRTVDWIVLGD 121

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           + V+L A     +G  + L+ +E+ ++  L       L+ E   + LY    + E   ++
Sbjct: 122 VKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYGYSLDVESNAVN 181

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           V +  LR+KL     G + +ETV G G+ L
Sbjct: 182 VHVHHLRRKL-----GSDMVETVRGVGFRL 206


>gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 235

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           ++ILL+ED+++LA  I+  L  E ++      G++ + L   +   FD I+LD  L    
Sbjct: 3   LKILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R  +   P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR
Sbjct: 63  GITVARRIR-KESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERR 121

Query: 119 SRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +  A      Q+ +V G+L +++    V+V G  I LT KE+ ++  L        T++
Sbjct: 122 LQREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++    + +  ++DV+I  LR KL     GK  I TV G GYVLR +
Sbjct: 182 DLLNEIWGYEYDGQTNVVDVYIRTLRNKLDVCGKGK-MIATVRGLGYVLRTD 232


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +       ILD+ L  + G+E
Sbjct: 7   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ R+R+++RR   
Sbjct: 67  VCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNF 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  I  G  +++L AK+       I +T  E+ +++     K   +T++  
Sbjct: 127 SQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +      + KI+DV I ++R K+ +      YIETVWG GY
Sbjct: 187 MTKTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGY 231


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++IV G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIVFGRFKLNLGTREMFREDQPMSLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVF 232


>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAATTPRNGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 241


>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSK-PMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|126739760|ref|ZP_01755451.1| DNA-binding response regulator [Roseobacter sp. SK209-2-6]
 gi|126718992|gb|EBA15703.1| DNA-binding response regulator [Roseobacter sp. SK209-2-6]
          Length = 221

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 11/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY----EFDAIILDLGLTD 56
           MR LL+ED+  LA ++   L     + +V D   D +E    Y    ++D I+LD+ L D
Sbjct: 1   MRFLLVEDNSNLAAAV---LDRLRLDGHVVDHAAD-VEAADSYIATTDYDLILLDIMLPD 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G + L+A R  +  TPV +L+  S + D+V  L  GADDYI+KPF+  EL AR RA++
Sbjct: 57  GDGRDFLKAHRAREGKTPVIVLTARSEVSDRVGVLDLGADDYITKPFDFSELEARCRAVL 116

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR  G   ++   GDL  +  A T++     I L  KE +++E+         +K   ++
Sbjct: 117 RRQGGGGSNVKRFGDLRFDPLAGTLQAGARSIALRNKELRLLEIFLAAPEQIHSKAKLVD 176

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+   +E     I+V++ +LRK L   AG +  I TV G GY
Sbjct: 177 RLFSYDEEVSENAIEVYVARLRKHL---AGSQAQIVTVRGLGY 216


>gi|119384397|ref|YP_915453.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119374164|gb|ABL69757.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED+  +A  ++  LK+  F V     GE         ++D I+LDL L  + G 
Sbjct: 1   MRALIVEDEPRIAADLDRALKAAGFLVETVADGETAWFRGGTEDYDLIVLDLNLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R     TPV IL+   +  ++V G+ +GADDY+ KPF  EEL+AR RA+VRR+ 
Sbjct: 61  TVLKRWRAEGCETPVLILTARGAWTERVEGIDAGADDYLPKPFRMEELIARARALVRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +    G L+V+L+  T  + G  + +T  E +++  L+L ++  +     L HLY 
Sbjct: 121 GRGNATQQVGRLTVDLNRMTAAIDGIPVAVTPLELRLVSYLALNRDRIVPPTELLEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  E+  I+  I +LR+KL     G   I T  G GY L + A
Sbjct: 181 DDESRELNAIEAIITRLRRKL-----GPGVIGTRRGFGYHLEDGA 220


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  +   L++E +NV V   G++   L +  + D ++LD  L  + G E
Sbjct: 3   KILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI RR
Sbjct: 63  LCRRLR-ARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRR 121

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     S ++ +GD+ ++ +   V   G  IHL   E++++E L        ++E  L+ 
Sbjct: 122 ALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDG 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +DV + +LRK + N    K+ I TV G GY   + 
Sbjct: 182 VWGHDVYVDERTVDVHVGRLRKAI-NKGRMKDPIRTVRGAGYAFNDQ 227


>gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
 gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           LR LR    + PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ ++G
Sbjct: 68  LRDLREWS-AVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    VT G L V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQLLRDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|312978124|ref|ZP_07789869.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
 gi|310895099|gb|EFQ44168.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
          Length = 225

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   + G   ++       D +ILDL L D  G ++
Sbjct: 4   IWCVEDDESIRKIEMYTLESMNFKVRGFEDGTTFVKALAEKHPDLVILDLMLPDEDGSDI 63

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           L+ LR    ST   PV I S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+
Sbjct: 64  LKKLR-GNSSTEELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRT 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + + L    V V G  I LT KEY +++LL     T  ++E  ++ ++
Sbjct: 123 NHKKEDKIEKDGIKILLKRHEVYVDGQEIELTLKEYGLLKLLITHPGTVFSREEIMDQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     E + +DV +  LR+ LS A    ++IETV G GY   E
Sbjct: 183 ETGFYGETRTVDVHVRTLRQTLSEAG---SHIETVRGVGYRYHE 223


>gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08]
 gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07]
 gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08]
 gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07]
          Length = 244

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 135

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 242


>gi|293602677|ref|ZP_06685118.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818868|gb|EFF77908.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 225

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI---ELCKFYEFDAIILDLGLTDI 57
           MRILLIED+  LA  +   L       +V +  +DG+         EFDA++LDLGL  +
Sbjct: 1   MRILLIEDEAELARWLSRSLARHAG--FVVEWADDGLVAERRLAVEEFDAVVLDLGLPGM 58

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  +R     TPV +L+   S+ +K+  L  GADD++ KPF  EEL AR+ A++R
Sbjct: 59  NGHALLAKIRARDDRTPVLVLTARDSLAEKIGTLHLGADDFLPKPFVVEELEARLIALIR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RSRG     +  G+L     A+     G  + L+ +E+ ++ +L  +    + K+  L+ 
Sbjct: 119 RSRGREHPRLSLGNLVFETAAQKFTASGQTLQLSPREHAVLRVLIQKSGEPINKQQILDR 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +  ++ I+V + +LRKKL++       I T+   GY L
Sbjct: 179 IVTDDVDINLEAIEVLVHRLRKKLADTGA---QIVTMRDMGYCL 219


>gi|302554583|ref|ZP_07306925.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472201|gb|EFL35294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 228

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPESDCFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 -SRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            S     S I T    G + + L  + V V G  I LT KE+ ++ LL+ R      +E 
Sbjct: 120 TSHEDTSSGIETELRLGPVHIELPTRRVSVDGAVIQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRAKLRMPA----LIETVRGVGYRL 223


>gi|239982779|ref|ZP_04705303.1| two-component regulator CutR [Streptomyces albus J1074]
 gi|291454626|ref|ZP_06594016.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357575|gb|EFE84477.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 217

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERVGVNDYDVIVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +   ++ T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRRVVELQMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFTELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGREIQLAPKEFAVLEVLLRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL   A     I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPA----VIVTVPGSGY 215


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +EL L ++ F+V      +D ++L +   FD +ILD+ L D+ GF 
Sbjct: 7   KIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLEDMDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E++AR++  +RRS+ 
Sbjct: 67  VCKKIR-EKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + ++  +  + + ++    ++ + H+       I LT  E+++I  L   +   ++ E  
Sbjct: 126 YNKTEKIQDNETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  +       +   I ++R K++++     +I+TVWG GY
Sbjct: 186 FENIWKEKYLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGY 230


>gi|168212863|ref|ZP_02638488.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715642|gb|EDT27824.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 232

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
 gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
           ATCC 51333]
          Length = 224

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   I   LK  +F+V      ++ + L +  +FD +I D+ ++D+ GFE+
Sbjct: 4   ILVVDDEAAICDVIAKSLKRASFSVTACTSAKEALTL-RLEQFDLMIFDVMMSDMDGFEL 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K+  P+  L+  ++  D ++GL  GADDYI KPF   ELV+R+ A +RR +  
Sbjct: 63  CRNVR-EKVDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSELVSRVNAHIRREKRL 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +++  G++   L A+ V V+   + LT  EY++ EL+   +    +++  L+      
Sbjct: 122 HHAVLTDGEIRFLLAAREVRVRDEIVTLTKMEYEICELMIRHRGQVFSRKQLLDQAGGYW 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E E   +   I  +RKK   A    + I+T+WG GY
Sbjct: 182 TESEPAAVVEHIKNIRKKF--APYQVDPIKTIWGIGY 216


>gi|285017456|ref|YP_003375167.1| two-component system regulatory protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472674|emb|CBA15179.1| probable two-component system regulatory protein [Xanthomonas
           albilineans]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+IED+  +A ++   L+     V     G  G+ L   +EFDAI+LDL L  + G 
Sbjct: 3   VRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 62

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  A+  TPV +L+   S+++K+ G  SGADDY+ KPF  +E+  R+ A+ RR 
Sbjct: 63  EVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRG 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    ++VTGDL  NLD   V  Q   + L     ++++ L       +T++     ++
Sbjct: 123 KGVHTRVLVTGDLEYNLDTLEVRRQSKLLQLNPTALKILQALMEASPAVVTRQELETRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G + P+   + V I  LR  + +   G   I+T  G GY
Sbjct: 183 -GEELPDSDSLRVHIHGLR-AVVDKPFGVPMIQTRHGIGY 220


>gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
 gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional
           regulator [Pseudomonas fluorescens SBW25]
          Length = 247

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D + +   +   L+   F+V   +      +L K   FD ++LD+ L D  GFE
Sbjct: 11  RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           +   L   + +TPV +L+   +  D+VRGL  GADDY++KPF   ELVARI +++RR SR
Sbjct: 71  LCNQLH-RRSNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQSR 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--------HRIHLTGKEYQMIELLSLRKNTTLTKE 172
               +   +G  +         V G          + L+  E +++++     NT L +E
Sbjct: 130 NTGPAAPRSGARAYRFGGWHFSVTGATLRRDGSPAVQLSTAESRLLQVFLAHPNTLLPRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + ID  + +LR+KL+     +  + T+WG GY+L
Sbjct: 190 RLIDLTAAADSDVSDRAIDRQVSRLRRKLAQGDAAQELLRTIWGGGYLL 238


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++  I   L+ E F V     G   +EL   + F  IILDL L  + G +
Sbjct: 3   RILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGED 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + P+ +L+   + E+++RGL  GADDYI KPF+  ELVAR+ A++RR R 
Sbjct: 63  VCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYRS 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----E 172
           +   L        GDL ++   +   ++G  + LT  E++++  ++       T+    E
Sbjct: 123 NNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELLE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    L  G D    + ID  I  LR+KL         I TV+G GY
Sbjct: 183 IAQGALPTGFD----RTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGY 225


>gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
          Length = 231

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL +DD  L   ++  L+ E F V +   GE  +   +   +D  +LD+ +  + GF+
Sbjct: 3   RILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGYDLAVLDVMMPQLNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   +  PV +L+      D + GL+ GADDY+ KP N   LVARIRAI+RR + 
Sbjct: 63  VLRELRKDSL-VPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAILRRLQS 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q         ++   DL V   ++TV + G  + +T  EY ++E+L LR+   +  + 
Sbjct: 122 QTQHGEKSAPPEILKLDDLEVQTGSRTVALNGRPVTMTSTEYSVLEVL-LREAGHVVSKA 180

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+    GR+     + ID+ +  LRKKL     G+  I+TV G GY
Sbjct: 181 ELSERALGRELTRYDRSIDMHLSSLRKKLGPLTNGEERIKTVRGVGY 227


>gi|109898568|ref|YP_661823.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700849|gb|ABG40769.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 240

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LL+EDD  LA ++   L+ E+        G  G+ L +   +  IILD+ +  + G 
Sbjct: 19  INVLLVEDDIDLASTVVDYLELESMQCDHASNGLMGLHLIERQSYQVIILDINMPKMDGI 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R   I TPV +L+   ++++K+ G Q+G+DDY+ KPF  +ELVARI+ + RR  
Sbjct: 79  TLCKRMRELGIDTPVLMLTARDTLDNKLEGFQAGSDDYLVKPFAMQELVARIQVLGRRRS 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + L V GDL+ +L  +    + H + L+    +++E+L      T+T++  +  ++ 
Sbjct: 139 GEVKRLSV-GDLNFDLTQRIASFKQHPLKLSPTALKILEVLMRASPQTVTRQKIIQSVW- 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G D+P+   + V I  LRK+L +A      ++TV   G+ +++ A
Sbjct: 197 GDDQPDSNSLKVHIYHLRKQL-DAYEASITLDTVASVGFAIKKKA 240


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  +EL L++EN++V+     ++ +   +  E D  ILD+ L D+ GF 
Sbjct: 4   KILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMSGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +RV   + P+ +L+      DK+ GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 64  LCQKIRVNH-AYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +         +S+IV   L +N       +    + LT  E+ ++ +L  RK   ++ E 
Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182

Query: 174 FLNHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++  +DE   K    I V I  LR+K+ +      YI+T+WG GY
Sbjct: 183 LFREIW--KDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGY 229


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+ +++ V+    GE+ +E  K Y  D I+LD+ +    G+E
Sbjct: 4   KILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLYP-DLILLDIMMPGKNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R   +S P+  L+      D V+GL SG DDYI KPF+  +L ARI A +RR + 
Sbjct: 63  VCNDIRDI-VSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKR 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     ++ +   ++S+NL  + V   G  + LT KE+ +IE LS+      +KE     
Sbjct: 122 NTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +   +   + K+R K+ N    + YI TVWG GY
Sbjct: 182 VWGYDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGY 223


>gi|291447797|ref|ZP_06587187.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350744|gb|EFE77648.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 3   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN-KEELVARIRAIVRRS 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+    +      + RR 
Sbjct: 63  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L ++  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 123 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  I++V+I  LR+KL     G   I TV G GY L
Sbjct: 183 DFAYDGDPNIVEVYISTLRRKL-----GAATIRTVRGAGYRL 219


>gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 248

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 125/247 (50%), Gaps = 23/247 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           +++L+IED+ ++A  + +  + E + V     GE+G  L KF E    FD I LDL L  
Sbjct: 6   VKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEG--LAKFKEAPDSFDIITLDLNLPK 63

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 64  MDGMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALH 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVE--------------VQGHRIH-LTGKEYQMIELL 161
           RR+   A++           D   VE              + G +I  LT KE+ ++  L
Sbjct: 124 RRAEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTL 183

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           S       ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY  
Sbjct: 184 SKSPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKF 241

Query: 222 RENAKDE 228
            ++  D+
Sbjct: 242 DDSGLDQ 248


>gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 216

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL        YI+TV G GY
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLEIP-----YIKTVKGIGY 212


>gi|196233280|ref|ZP_03132125.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196222585|gb|EDY17110.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 244

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   I   L    ++V     G +G+E      + A+ILDL L  + GFE
Sbjct: 11  RLLVIDDDRKLCRLIADYLDPLGYDVATVHTGPEGVERATAEAWHAVILDLMLPGLDGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VL+ +R      PV +L+      D++ GL+ GADDY+ K F+  EL+AR+RA+ RRS R
Sbjct: 71  VLKRIRRTS-DVPVLMLTARGDEADRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSVR 129

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A      ++ IV   L +N  ++T  +    + LT  E++++  L+  K    T++  
Sbjct: 130 TPATTDKETEAEIVIDRLRINPGSRTAALGDQALLLTPVEFELLLSLARAKGRVKTRDHL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  + +   E   + IDV I  LRKKL +     ++I TV   GY+L
Sbjct: 190 LEEIREREYEVFDRSIDVHISALRKKLGDDPKTPHFIRTVRAAGYML 236


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +  D+   S+ +     EV  H   + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +I+DV I  LR KL +       I+TV G GY L
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKL 228


>gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
 gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI      ++ A+ILD+ L D+ G 
Sbjct: 13  MKILLVDDDAELGTMLREYLSGEGFNAELVLTGKEGITAALSGDYSALILDIMLPDMSGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 73  DVLRQVR-QNSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRRFD 131

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S I  G+L+++   ++   QG    LT  E+ ++ELL       +TK+  
Sbjct: 132 ERPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+     +  IETV   GY +R
Sbjct: 192 SDKGLGRPREAYDRSVDVHISNIRQKLAALPDNRLNIETVRSIGYRIR 239


>gi|237740075|ref|ZP_04570556.1| two-component response regulator [Fusobacterium sp. 2_1_31]
 gi|229422092|gb|EEO37139.1| two-component response regulator [Fusobacterium sp. 2_1_31]
          Length = 236

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE G+EL +   +D ++LDL L    G 
Sbjct: 14  IKILLVEDDKNIQRLLTLELRHKEYLVDSAYDGEQGMELFERNYYDVVLLDLMLPKKSGK 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ +++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 74  ELCQEFRKLN-NTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 132

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +   +  D+ ++L AK V ++   I+LT  E+ ++E     K  + ++E  +  ++
Sbjct: 133 NFVDKQFYLEKDIKLDLSAKRVYLREEEINLTKTEFLILEYFMKNKGLSCSREKIIIDVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 193 GYDFDGEEKIVDVYINSLRKKID---LDNRYIHTIRGFGYMFQ 232


>gi|212712385|ref|ZP_03320513.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM
           30120]
 gi|212685131|gb|EEB44659.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM
           30120]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L  ++   L+   FN     L  D  +  +   FD ++LDLGL D  G 
Sbjct: 1   MNVLLVEDDLQLGKALCRGLELAGFNPCWVRLLADAKQQLQSRNFDVMLLDLGLPDGDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L A R +  S P+ IL+  + +++ V  L SGADD+++KPF   EL++R++AI RR  
Sbjct: 61  DELIAWRQSGESIPIIILTARNKMDNLVTSLDSGADDFLTKPFEMPELISRVKAISRRMA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +    +L +N     V + G  + L+GKEY ++  L    +  + K      L+ 
Sbjct: 121 GFSSEIWQLDNLQLNPLNHQVTLDGQLLLLSGKEYLLLYELIKNADNVVRKTDLEQRLF- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G D+ E   ++V I  LR+K+     GK+ I T+ G GY+L++ A+
Sbjct: 180 GLDDVESNSLEVHIHNLRRKI-----GKDRIITIRGIGYLLKKEAQ 220


>gi|118467592|ref|YP_886240.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168879|gb|ABK69775.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGSQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLR-ADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGY 223


>gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +ILL+E ++ ++  IE+ L  E + V +   G + +E  +  E+  I+LD+ +  + G 
Sbjct: 4   FKILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMIPGLNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+  S + DKV GL  GA+DY++KPF  EEL+ARIR   R   
Sbjct: 64  EVCRRIRQFS-CVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKL 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++   V     + +D KT +V   G  I LT KEY ++E L + KN  LT+E  +  +
Sbjct: 123 VKSKFDEVKVK-EIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  ++DVFI  LR K+ N +  K  I T+ G GYV+++
Sbjct: 182 WGYDYVGDTNVVDVFIRYLRSKIDNDSKEK-LITTIRGVGYVIKD 225


>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
 gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 18  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 78  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 136

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +      +N+        ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 137 NQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 197 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 240


>gi|218288607|ref|ZP_03492884.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241264|gb|EED08439.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L+ ++  +L+ E+F V V   GE+G+ L +   +DA+++D+ L  + G+
Sbjct: 1   MRILLVEDDRGLSDALAQLLREESFQVDVAHDGEEGLYLAETAVYDALVVDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  ++  PV  L+ +  ++ +V+GL +G DDY+ KPF  EE +AR+RA++RR+R
Sbjct: 61  DLVRTLRDKRVHVPVLFLTALGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNR 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + + +G L ++  A+        I L+ KE+ ++E L   +   L +E   N ++
Sbjct: 121 ELGTDMTLRSGPLVLDPLARRATFGNEPIKLSDKEFDLLEYLLSHRGQILMRERIFNRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +     +D+++  LRKKL    G    I TV   GY+
Sbjct: 181 GIDSDVMDTTVDLYVHYLRKKL-QPFGYDTAIRTVRNVGYM 220


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLR-TRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGH-------RIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +     GD ++      ++V+ H        + L  KE++++E+        LT+   
Sbjct: 122 NEE----VGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV + +LR K+ +  G   ++ TV G GY
Sbjct: 178 IDRVWGSDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGY 222


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 3/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +   L+   F+V     G +     + +  D ++LDL L    G E+
Sbjct: 5   ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +RV   S P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RRS G 
Sbjct: 65  CKDVRVFS-SVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRS-GP 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q+  + G L ++       + GH + LT  E+++++ L+       +++  ++ +Y   
Sbjct: 123 GQTTALAG-LVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIYPDE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                + ID  I KLRKK+++ A G++ I +V+G GY     ++ E
Sbjct: 182 RVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFERASRRE 227


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V V   G + ++L +  + D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K  TPV +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VLRQIR-TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121

Query: 122 -HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q++      I  G L+++ DA  V   G  I LT +E++++  L+      +T++  
Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV + ++R+K+         + T  G GY L+
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLK 229


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L++DD++L   +  +++   +       GE+G+ L    + D ++LD+ +  + GF+V 
Sbjct: 1   MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R +R      P+  LS    I DK  G ++G DDY+ KPF+ +EL+ RI A +RR +   
Sbjct: 61  RRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDDL 120

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +    TGDL V  +     + G ++ LT KE++++ LL+       T++   
Sbjct: 121 AFAKAVNREGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++    E +   I VF+ K+R+K+        Y+ TVW  GY   E
Sbjct: 181 AHIWGEDSEVDESSITVFMRKIREKIEENPSQPKYLLTVWRVGYKFAE 228


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 128/228 (56%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IED++ ++  I+  L+ E +NV+    G++G++  +  + D I+LDL +  I G 
Sbjct: 4   INILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S E+ + GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 64  DLIKEIR-NKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122

Query: 121 GHA---QSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
            +      +I T D  L ++L+       G  I LT  E+Q+I+ L    N   T+    
Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+     YD  D    + ID  I  +R+K+ +     +YI+T++G GY
Sbjct: 183 EITFGFDYDAYD----RAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGY 226


>gi|229017879|ref|ZP_04174762.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|229024084|ref|ZP_04180555.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228737180|gb|EEL87704.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228743470|gb|EEL93587.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 8/207 (3%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L++E +N+Y    G++ +++   YE D +ILD+ +    G EV + +R    + P+ +LS
Sbjct: 23  LRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENN-TVPILMLS 81

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-------GHAQSLIVTGDL 132
             +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS         +   +I    +
Sbjct: 82  AKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNAATPKNEDGIIRIRTV 141

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++    TV+V G  I LT  E+ ++ LL+       + E     +++       K + V
Sbjct: 142 EIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGSNKTVMV 201

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGY 219
            I  LR KL     G+  I TVWG GY
Sbjct: 202 HISNLRDKLETVMNGEKLIHTVWGVGY 228


>gi|229815013|ref|ZP_04445351.1| hypothetical protein COLINT_02056 [Collinsella intestinalis DSM
           13280]
 gi|229809500|gb|EEP45264.1| hypothetical protein COLINT_02056 [Collinsella intestinalis DSM
           13280]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + +   L    ++V     GE  I        D I+LDLGL DI G EV
Sbjct: 9   ILVVEDDPAVRNLVTTALDLHGYSVEKATDGETAIMDAASRNPDLIMLDLGLPDIDGVEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R +  + P+ ++S      DK+  L +GADDY++KPF+ EE++AR+RA +RRS   
Sbjct: 69  INKIR-SWSAVPIIVISARVEDSDKIGALDAGADDYLTKPFSVEEMLARVRANLRRSTMI 127

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S    G L ++  A   E+ G R+ LT  EY+++ LL+   +  LT     + 
Sbjct: 128 TAESVEASTFDNGGLHIDYAAGYAELDGERLSLTPTEYKLLVLLAKNVDKVLTHTFITHE 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + ++  + VF+  LRKK+         I+T  G GY ++
Sbjct: 188 IWGTSWDSDIASLRVFMRTLRKKIEADPSHPTMIQTHVGVGYRMQ 232


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 250

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 20/233 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  +++L L+   + V V   G DG+E  +    D +ILD+ L ++ G  +
Sbjct: 21  VLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVMLPELDGIGL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  +   PV ++S      D V GL++GADDY+ KP +   +VARIRA++RR    
Sbjct: 81  CRRIR-EESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     S G A  ++V GDLSV+     V   G  + LT  E +++   +    + 
Sbjct: 140 PDPEGPAAAGSSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L +   L  ++D   E + +++D+ + +LRKK+     G   IETV G GY L
Sbjct: 200 LDRRRLLREVWDYGWEGDTRVVDLCVLRLRKKI-----GSGRIETVRGFGYKL 247


>gi|90962136|ref|YP_536052.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821330|gb|ABD99969.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 125/236 (52%), Gaps = 22/236 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M++L+IED+K++   + +  + E ++V   +   DGI   + +     E+D I LDL L 
Sbjct: 1   MKLLMIEDNKSVCEMMSMFFEKEKWDV---EYAYDGISAVEKFKEKSDEWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +V   +R    + P+ IL+   S  D++ GL+ GAD+Y+SKPF+   L+ARI+A+
Sbjct: 58  GMDGMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKAL 117

Query: 116 VRRSR----GHAQSLIVTGDLSVNLD-------AKTVEVQGHRIH-LTGKEYQMIELLSL 163
            RR++    G ++   V  D  V  D        +   +  +RI  LT KE+ ++ +L+ 
Sbjct: 118 HRRAQISALGSSKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAK 177

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 178 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 231


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   +   L++E F+V     G +G ++ +  +    ++D+ + ++ GFE
Sbjct: 3   QILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR++    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS  
Sbjct: 63  LCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSNQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178
            +++ I  G+++++  +  +++      +  KE++++  L+       T+E  +  +   
Sbjct: 123 ASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQR 182

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            YDG D    + +DV I +LR        G   + TV G GY L E  
Sbjct: 183 DYDGSD----RTVDVHIKRLRDHFDEEKDGIRIV-TVRGVGYKLEETT 225


>gi|88857553|ref|ZP_01132196.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas tunicata D2]
 gi|88820750|gb|EAR30562.1| response regulator receiver domain protein (CheY-like)
           [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 5/218 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++A  IEL  ++  F+    D G+  +   K Y+ D I+LDL L +  G  
Sbjct: 3   KILIVEDDLSIAQGIELFFRANQFDTLHIDDGDLVVNAVKHYQPDLILLDLMLPNKDGMA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             +A+R+     P+ +L+ +   + K++GLQ G DDYI KPF+  E+V R +AI++RS G
Sbjct: 63  CCQAIRLFS-DVPIVMLTAIVEQQKKLQGLQLGIDDYICKPFDAMEVVLRAKAILKRSIG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q       L++N DA  ++     + L+  E+ + ELL +      +++  +   Y  
Sbjct: 122 QVQ----YNTLALNADALEIKTPLGVVSLSHSEFSLFELLFINHERIFSRDKIIELAYPE 177

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +   + ID  I  +RKK          IE+V+G GY
Sbjct: 178 LHDINDRTIDSHIKNIRKKFKVTLNAVAPIESVYGAGY 215


>gi|303257821|ref|ZP_07343831.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|330998757|ref|ZP_08322485.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
 gi|302859424|gb|EFL82505.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|329576254|gb|EGG57770.1| response regulator receiver domain protein [Parasutterella
           excrementihominis YIT 11859]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L++E F+V V D      E  K    D IILD  + +I G   
Sbjct: 7   ILIVDDESKIRRLLSRSLEAEGFDVAVADSAMSASEYLKNGHCDLIILDYMMPEIDGMAF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  LR  K S PV +LS    I  K + L+ GADDY+ KPF+ EE+ ARIRAI+RRS G 
Sbjct: 67  LAELR-KKSSIPVIMLSAREEIAKKTQALELGADDYVVKPFSIEEMTARIRAILRRSGGV 125

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A    V G L ++ D +T   +   I L   E++++ +L  R  T  T E  L  
Sbjct: 126 KTGPAATVQAVNGPLVMDPDKRTCRYKDQEIRLADTEFRLLFILVKRPGTIFTHEDLLRR 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      E+  + V + ++RKKL+ A    + I +  G GY + + ++++
Sbjct: 186 VWGPEFIGELNYLRVSLSRIRKKLTAAGFPGSAISSYSGIGYYIEDLSEED 236


>gi|284034108|ref|YP_003384039.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283813401|gb|ADB35240.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 218

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA +I   L+ +   V V + G   +E     E+D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEPLLAAAIAEWLRDQTHAVDVAEHGAAALERLDVNEYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L  +   T V +L+  +++ D+V GL+ GADDY++KPF   EL AR+ A+ RRSR
Sbjct: 61  EVCRRLVESGSPTRVLMLTAAAAVTDRVEGLELGADDYLTKPFAFAELAARVLALGRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L+++     V   G  + L+ KE+ ++  L      T++ E  L   +D
Sbjct: 121 PADPPVLRRAGLTLDPARHEVFRDGRYVPLSKKEFAVLAELLRADGATVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + + I KLR+KL    G    ++TV G GY
Sbjct: 181 EHVDPFTGAVRLTILKLRRKL----GEPGLVDTVTGVGY 215


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+SE + V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +      +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYAL 225


>gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR
 gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus C427]
 gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M899]
 gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           C160]
 gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus aureus subsp. aureus M809]
 gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB
           transporter [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + +    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 5   LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQLC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 65  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 124 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWGYDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 184 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSI--ELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDI 57
           M+IL+++D+ ++ + I  +L ++ E + V     G + +E  ++ E  D +ILD+ L D 
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDT 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + R
Sbjct: 60  DGYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMAR 119

Query: 118 RSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++ 
Sbjct: 120 RVKKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 LLEKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 224


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  + +++   L+SE + V   +  +D + L K   +D I+LD+ L D  GF 
Sbjct: 3   RILLVEDDPFIVNNLTEFLQSEGYIVSAVNGQKDALMLLKQEVYDIILLDISLKDGNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A++ +   TPV  ++        V GL  GADDYISKPF   EL++RI++++RR  G
Sbjct: 63  VCKAIK-SMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRC-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
             QS+I    + V+ +   V  QG+ I L+  EY+++ +    + T +++   L  ++D 
Sbjct: 121 KVQSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDI 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D      + V++ +LR+K+ +       I+TV G GY
Sbjct: 181 AGDFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGY 219


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 15/226 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K +A  I+  L++E +   VT  G++ I + +   FD +ILDL L D+ G E
Sbjct: 7   RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+     P+ +L+      D++ GL  GADDY++KPF+ +ELVAR+RAI+RR+  
Sbjct: 67  ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125

Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF--- 174
            G    LI    GDL V+L       +   + LT  E++++ +         +++     
Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185

Query: 175 -LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L + Y G D    + IDV I  LR K+        YI TV+G GY
Sbjct: 186 VLGYDYVGYD----RTIDVHIKNLRHKIE--CEYYKYIVTVYGVGY 225


>gi|295095071|emb|CBK84161.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALSLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNTDNSSPTLEVDSLSLNPGRQEASFDGETLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
 gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
          Length = 245

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 240


>gi|218529080|ref|YP_002419896.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240141918|ref|YP_002966426.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
 gi|218521383|gb|ACK81968.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011860|gb|ACS43085.1| DNA-binding response regulator in two-component regulatory system
           [Methylobacterium extorquens AM1]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +   +  +L+   + V     G D   L      D ++LD+ L  + GF++
Sbjct: 12  VLLVEDDDGIRALVTRILRESGYRVTGCRSGADMWSLQPDLAVDLVLLDVMLPGVSGFDL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LRALR AK + PV +LS  +   D+V GL+ GADDY++KPF + EL+ARIRA++RR+   
Sbjct: 72  LRALR-AKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRASIA 130

Query: 121 -----GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +      ++L ++  V+ +G  + L+G E+ ++ +        L +E  
Sbjct: 131 PLPAAAARPEALAFAGWRLDLRSRALVDPEGAAVDLSGAEHDLLLVFLEHPGRVLGREQI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L         P  + +D  + +LR+KL    G    I+TV G GY+L
Sbjct: 191 LEMCRGRLAAPSDRSVDTLVSRLRRKLEPPEGAAPVIKTVRGSGYML 237


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 119 -SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE GIEL +   +D ++LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGIELFERNYYDVVLLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ +++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +   +  D+ ++L AK V +    I+LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDLDS---KYIHTIRGFGYMFQ 223


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 125/221 (56%), Gaps = 8/221 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++EDD  +   + L L  E + V V   G++ ++  +    D +ILD+ L  + GF VL
Sbjct: 1   MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLPGLDGFSVL 60

Query: 64  RALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             +R   IST  PV +L+    ++D++RGL+SGADDY+ KPF  EEL+ARI A++RR +G
Sbjct: 61  EEIR-EYISTDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR-KG 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  I   ++++++ ++   + G  + L+  E+ ++ +L       ++KE  L  ++  
Sbjct: 119 KVER-ISYFEITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGS 177

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            D     +++V+I  LRKKL         I+TV G GYV+R
Sbjct: 178 EDWGNPNVVEVYINYLRKKLGKTG---ERIKTVRGSGYVVR 215


>gi|298369911|ref|ZP_06981227.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281371|gb|EFI22860.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 223

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A ++   LK   + V     G       +  E+D ++LDLGL  + G 
Sbjct: 1   MRVLIVEDDNMIAEAVCANLKDSGYAVDRVKNGAQTAAAVQAQEYDLLLLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR +    PV I++    +  ++ GL  GADDYI KPF+  EL AR+RAI+RR+ 
Sbjct: 61  QVLARLRSSGCQVPVLIVTARDDLHSRLHGLDGGADDYIVKPFDMAELQARMRAILRRNN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +Q L+  G L++N     V++ G    + L+ KE+ +++ L +R  T  ++    + +
Sbjct: 121 GQSQPLLSNGVLTLNPATYQVQIAGQTEPVALSNKEFAVLQALMMRPGTIFSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   +D  I  LRKKL     GK +I  V G G+++
Sbjct: 181 YGWGEEVESNAVDFLIHSLRKKL-----GKEHIRNVRGVGWLV 218


>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 254

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  + +      + V V   G   +EL      D  ILD+ L D+ G 
Sbjct: 31  VRVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVMLPDMDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      P   L+   + ED+V GL +G DDY++KPF+ EE++ R   +V+RS 
Sbjct: 91  DVLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSG 150

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G ++ L+V GDL +N     V   G  I LT  +Y +++ L     T L+KE  L  
Sbjct: 151 VVSGGSEVLVV-GDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQD 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+   A     I TV G GYV+R
Sbjct: 210 VWGYDFGGRANIVELYISYLRKKID--ADRDPMIHTVRGAGYVIR 252


>gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA3]
 gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266]
          Length = 236

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R  +   P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIR-RESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|212633751|ref|YP_002310276.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555235|gb|ACJ27689.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PPQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     + D  ILD+ L    G  
Sbjct: 4   KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+  L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I   L+ E +       G + +EL K  + D I+LD+ +  + G  V
Sbjct: 5   ILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLDGLSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R       + +L+  S+  DK+ G + GADDYI+KPF+ + LVA+I A+++R+   
Sbjct: 65  CRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRADAG 124

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ    L   G L++N  + TV + G  I LT KE++++  L   K   LT+EM +N ++
Sbjct: 125 AQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMNLVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL +       I TV G GY L
Sbjct: 185 GYEYYGDLRNVDSHIKRLRQKLKSEG---RLITTVRGSGYKL 223


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I   ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|257440237|ref|ZP_05615992.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
 gi|257197271|gb|EEU95555.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +++L++ED+ ++   I L L+         D  E  + L +     DA ILD+ L  + G
Sbjct: 2   VKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQKPGCDAAILDVMLPGMNG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           F +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ R  
Sbjct: 62  FSLCETIRRTDQKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRV 121

Query: 118 -RSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            RS G      +A + +V+G+  ++ + + +   G +I LT  E+Q++EL        L 
Sbjct: 122 GRSGGGSAADENAPTTLVSGEFVLDENRRVLLKAGRQIELTQVEFQIMELFFHNPGIALV 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +E  L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 182 REKILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPTHIMTVWGYGYRWEE 234


>gi|237807962|ref|YP_002892402.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237500223|gb|ACQ92816.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +   +   L S+ F V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 8   ILIIEDEQQIRRYLGAALLSDGFKVFEADTLQRGLIEAATRKPDLVILDLGLPDGDGNQF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +  +R      P+ ILS  S   DKV+ L +GADDY+ KPF   EL+AR+RA +RR    
Sbjct: 68  IEEIRQWS-QIPIIILSARSDERDKVKALNNGADDYLVKPFGIAELLARVRANLRRRNAD 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +   +I  G++ ++   + V   G+ IHLT  EY+++  L  +     T    LN ++
Sbjct: 127 RENETPIICFGNIKIDRVNRQVFRNGNEIHLTKLEYRLLMTLLSQPGRVFTHRQLLNTVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + I +++  LR+KL   A    Y++T  G GY L
Sbjct: 187 GAAYIEQTQYIRIYMGHLRQKLEQDATRPRYLQTETGIGYRL 228


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-EESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  ++++   
Sbjct: 124 QCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGY 221


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                       +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTEE 242


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  + L L+ E + +     G  G+   +   +DA+ILDL L  + G E
Sbjct: 6   KILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQSLIV-TGDLS-----VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++L +  G LS     ++  A+ V +    + LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           N ++    E     ++  I +LR K+         I TVWG+GY
Sbjct: 186 NQVWGYEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGY 229


>gi|322831824|ref|YP_004211851.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167025|gb|ADW72724.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G+ G+E     E+ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLIAEGFDASLVLTGKAGVEGAMSGEYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R      P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KNSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVE 119

Query: 119 --SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                H+  S +  GDL++N   ++ E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 EQQESHSDNSSVNYGDLTLNPATRSSEWRGVPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                   E   + IDV I  +R+KL +  GG    IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSIDVHISNIRQKLGSLEGGDILTIETVRSIGYRIR 227


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 22/243 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL----CKFYEFDAIILDLGLTDI 57
           RIL +ED+  +   +   L  E  +      GE  +           +D ++LDL L  +
Sbjct: 15  RILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLMLPGL 74

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR     TPV +++  ++I D V GL+ GADDY++KPF+   L+AR++A++R
Sbjct: 75  DGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALLR 134

Query: 118 RSRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R R H  +          +V G+L ++ D   V + GH + LT KE+ ++ L +     +
Sbjct: 135 RHR-HPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHS 193

Query: 169 LTKEMFLNHLY----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            T+   L+ ++    DG D      ++  I +LR K+        +I+TVWG GY   + 
Sbjct: 194 FTRGELLDRVWGEEFDGYDH----TVNTHINRLRNKIETDPARPRFIQTVWGIGYRFADE 249

Query: 225 AKD 227
            +D
Sbjct: 250 ERD 252


>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
 gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQ-AQRPLPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 241


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   + L L+ E + V ++  GE+ +      + D ++LD+ L  + G++
Sbjct: 5   KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + PV +L+      DKV GL+ GADDY+ KPF+ +E++ARI+AI RR   
Sbjct: 65  VCREIR-KKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      +V   L VN+    ++V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + IDV + +LR+KL   +  K  ++TVWG GY    N
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGVS-DKWALKTVWGVGYKFEVN 229


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  +I++ LK+E   V+    G D + L +  E   I++D+ +  + G + 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S       +  G + +N + K V V G  + LT  EY+++ELL   K    + E    +
Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++         + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQE 230


>gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L+  ++ +L  EN  V     GE G+        D I+LD+ +  + GFE 
Sbjct: 4   ILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAGLAAMD-DSVDLILLDVMMPKLNGFET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L+ LR  K   PV +L+      D+V GL+ GADDY+ KPF++ EL+ARIRAI+RR+   
Sbjct: 63  LKQLR-EKWDVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRRTQAG 121

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G  Q+ +VT  D+ +          G  + LT  E+ ++    L     LTKE     +
Sbjct: 122 KGQQQNDVVTYRDIKLYPGRLEAYCNGDLLDLTSTEFALLHYFLLHPGKVLTKEDLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              R     + ID+ +  LRKKL +   GK  I+T+ GRGY+L E
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPDWPNGKPRIKTLRGRGYLLVE 226


>gi|311108765|ref|YP_003981618.1| transcriptional regulator QseB 4 [Achromobacter xylosoxidans A8]
 gi|310763454|gb|ADP18903.1| transcriptional regulatory protein QseB 4 [Achromobacter
           xylosoxidans A8]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  ++ ++   L++  F       G   +E  K   FDA++LD+GL  + G  
Sbjct: 12  RVLIVEDDPVISGNLYTFLEARGFLPDAAYSGPAALERLKEQRFDALVLDIGLPGMDGNA 71

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL  LR   ++  PV +L+   S+EDK+ G   GADDY++KPF   E+ AR+ A+++R++
Sbjct: 72  VLHTLRNDMRVDVPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLIALIQRAK 131

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G     +   G LS +   + V V G+ +HLT K   +IE L       +++E   + L+
Sbjct: 132 GATVDAVRAFGPLSYDTRNRAVSVNGNPVHLTRKASLIIEALLRDPGRVVSREELESTLW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G + P    +   +  LR+ L++A  G + IET+ G G+ L
Sbjct: 192 -GNEPPSSDALRSQVHLLRRALADA--GFDGIETIHGTGWRL 230


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+ ++ +++   LK E F V     GED +E  + +  D +ILD+ +  + G+E
Sbjct: 4   RILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K    + +L+  + I DKV GL+ GADD++SKPF+  EL+ARI+A+VRR   
Sbjct: 64  VCRRLESRK-GVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + ++ G L V   ++T E+    + LT KE+ ++ LL        T++  L 
Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++        + +D+ I +LRKKL      ++ ++TV+G GY
Sbjct: 183 QVWGIDYVGGTRTVDIHIQRLRKKLEPH---QSMLQTVYGIGY 222


>gi|294139015|ref|YP_003554993.1| transcriptional regulatory protein CpxR [Shewanella violacea DSS12]
 gi|293325484|dbj|BAJ00215.1| transcriptional regulatory protein CpxR [Shewanella violacea DSS12]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/200 (35%), Positives = 112/200 (56%), Gaps = 5/200 (2%)

Query: 25  FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           F + +   G+ G++L    ++D I+LD+ L  + GFEVL++LR  K  TPV +L+     
Sbjct: 26  FELTLAHDGQSGLDLALEKDYDLILLDVMLPKLNGFEVLKSLRANK-QTPVLMLTARGDE 84

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR---GHAQS-LIVTGDLSVNLDAKT 140
            D+V GL+ GADDY+ KPFN  ELVARI+AI+RRS       QS L   GD+ ++     
Sbjct: 85  IDRVVGLEIGADDYLPKPFNDRELVARIKAIIRRSHILPNDKQSCLHEYGDIKLDPSRHE 144

Query: 141 VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKK 200
           V  Q   + LTG E+ ++  +       ++KE     + + +  P  + +D+ +  LRKK
Sbjct: 145 VYCQDQLVILTGTEFGLLFEMIQNAGDLISKESLSEKVLNKKLMPFDRSLDMHLSNLRKK 204

Query: 201 LSNAAGGKNYIETVWGRGYV 220
           L     G+  ++T+ G+GY+
Sbjct: 205 LPERMDGRPRVKTIRGKGYI 224


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 128/223 (57%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++E + V     G +  ++ K  +   I+LDL L  I G E
Sbjct: 5   KILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISGME 64

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V + +R    +++I  P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+AR++A++R
Sbjct: 65  VCKKIRRDDEISEI--PIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLR 122

Query: 118 RSRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+   A S     G+L+++     V     ++ LT KE++++ +L   +   LT+++ L+
Sbjct: 123 RTNTVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      YIET+ G GY
Sbjct: 183 KIWGYEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGY 225


>gi|297587723|ref|ZP_06946367.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297574412|gb|EFH93132.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 219

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 114/219 (52%), Gaps = 8/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSEN--FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           IL ++D+  +   I+ +LK  N   +VY   L  D  +L K+   D I+LD+ +  I G 
Sbjct: 4   ILAVDDELDMLDLIKNILKKNNHQVDVYQNPLDVDNSKLSKY---DLILLDVMMPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + +R AK+  P+  L+  +  ED V GL  G DDYI+KPF   EL+ARI A +RR +
Sbjct: 61  SFCKDIR-AKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G++  +L +  V V   ++HLT  EYQ+ ELL+ RK    ++E     ++ 
Sbjct: 120 RERHTSLNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +   I   I  +R K      GKN IETVWG GY
Sbjct: 180 FDGIGDASAISEHIKNIRSKFQKY--GKNPIETVWGIGY 216


>gi|187930436|ref|YP_001900923.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|187727326|gb|ACD28491.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L+ E   V+  D  E G+      + DA+ILDLGL D  G ++
Sbjct: 12  VLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGTRQPDAVILDLGLPDGDGMQL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   ELVAR+R ++RR   R
Sbjct: 72  IRELRTW-TEVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+I  G++ V+L  + V   G  +HLT  EY+++ +L  R+ T +T    L  ++
Sbjct: 131 GEDGGSVIRFGEVEVDLARRLVSRNGEAVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGY 230


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LLI+DD  L   +   L     +V     G DG++     ++D +ILD+ L  + GF
Sbjct: 20  LSLLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L  LR  +   PV +L+  ++  D+++GL++GADDY+ KPF+ +EL+AR+RA++RR S
Sbjct: 80  TLLSQLR-RRTPVPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRAS 138

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  A +L      D+ +N   + V ++   I LT  E+ ++ LL       LT+E     
Sbjct: 139 QAPADALFDFTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEISLA 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + + R     + +DV I  +R KL   A    +I+TV G GYV 
Sbjct: 199 ILERRLMSHDRSLDVHISHIRSKLETLA---PFIQTVRGVGYVF 239


>gi|330810162|ref|YP_004354624.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378270|gb|AEA69620.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 235

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 19/230 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V +   G+  +     +E   ++LDL L    G +
Sbjct: 8   KVLLVEDDERLAGLIAHFLSQHGFEVRIEHRGDLALAAFLAFEPKVVVLDLMLPGQSGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR   
Sbjct: 68  VCRGIRNVA-DTPIVILTAKEDDVDHILGLESGADDYVIKPIKPAVLLARLRALQRRQVP 126

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG  +     G LS++  ++ V + G  + LT  E++++ LL+      L+++  L
Sbjct: 127 DINVRGAHE----FGRLSIDRSSREVRLAGDLVELTTMEFELLWLLASAAGKILSRDDIL 182

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N +    +DG +    + +DV++ KLR KL++       I+TVWG+GY+ 
Sbjct: 183 NRMRGIAFDGLN----RGVDVYVSKLRAKLNDNPREPMRIKTVWGKGYLF 228


>gi|300088022|ref|YP_003758544.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527755|gb|ADJ26223.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSE--NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+IL++EDD  +   + L LK       ++   L ++G+++ +    D  ILDLGL D  
Sbjct: 1   MKILIVEDDSTIVELVSLCLKVSWPEAQIFYAGLADEGLDILEQENPDLTILDLGLPDRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+L+ +R    S PV IL+      D VRGL+ GADDYI+KPF + E V+R +A++RR
Sbjct: 61  GLELLKDIRQIS-SVPVIILTVRDEEADVVRGLELGADDYITKPFRQMEFVSRAKALLRR 119

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    SL VT G L  +   + +   G  I LT  E +M+ LL+  +   ++ +   N 
Sbjct: 120 HQAGDTSLPVTIGPLQFSASRRKITADGKTIKLTATEGKMLYLLARNRGKAVSHDAISNA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  +       I V +  LR+KL     G + I T  G GY++++
Sbjct: 180 IWGEKIPDAANSIRVHMRNLRQKLQKIDMG-DIIATRSGAGYLMKK 224


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 126/222 (56%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DDK +   + L L+ + + V +   GE+ +      + D I+LD+ L  I G++
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R  K + P+ +++      DKV GL+ GADDYI KPF+ +E++ARI+A+ RR  +
Sbjct: 65  VCREIR-KKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123

Query: 121 GHAQSLI--VTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A+S I  V  D LSVN+    + V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + IDV + +LR+KL   +  K  ++TVWG GY
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGVS-DKWALKTVWGVGY 224


>gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 122/235 (51%), Gaps = 21/235 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KF----YEFDAIILDLGLT 55
           M+IL+IED+ ++   + +  K E +     +   DG+E   KF    +E+D I+LDL L 
Sbjct: 1   MKILMIEDNHSVCEMMAMFFKKEGWQY---EFAYDGVEAEEKFSAAPHEWDVILLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V   +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+
Sbjct: 58  KKDGMQVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKAL 117

Query: 116 VRRSRGHA--------QSLIVTGDLSVNLDAKTVEV--QGHRIH-LTGKEYQMIELLSLR 164
            RRS+  A        Q           +D KT EV   G  +  LT KE+ +++ L+ +
Sbjct: 118 QRRSQLSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASK 177

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                T+   L  ++D     + + +D  I KLR+KL   A G   I+TVWG GY
Sbjct: 178 PRQVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLE--AVGPQVIQTVWGVGY 230


>gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 119/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L++E+ + +    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 14  LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQLC 73

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 74  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 132

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 133 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWGYDY 192

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 193 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 227


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ LK+E F VY    G++ +E  +  + D  ILD+ L DI GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDIDGFHI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR    
Sbjct: 65  CQKIR-EKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123

Query: 119 -SRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +    QS+IV       L +N +     + G  + LT  E+ ++  L   +   +  E 
Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++  +       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|83647683|ref|YP_436118.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83635726|gb|ABC31693.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I L+EDD+ LA  + L L++ +F     + G+D +       FD +I+D  L D+ G 
Sbjct: 1   MKIGLLEDDQNLADQLLLNLRNSDFQCRHYNTGKDFLFAVTHDSFDLLIMDWQLPDMDGI 60

Query: 61  EVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++LR +R  +    PV  L+   + ED +  L++GADDY+ KP    EL+AR++A+ RR+
Sbjct: 61  DILRKVRQQQEWPIPVLFLTQREAEEDIIEALEAGADDYMVKPARPGELIARLKALSRRN 120

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R           G  S+N   +T+++ G  + LT K++ +   L   K   L+++  L  
Sbjct: 121 RTEESDAEEASYGPFSINHKKRTIQLNGEPLTLTDKDFDLTTFLFENKGRLLSRKYLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +   + +D  + +LR+KL         I+T++  GY L E
Sbjct: 181 VWGVSSDINTRTVDTHMSRLRRKLGIKPENGFRIKTIYQHGYRLEE 226


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RILL+ED++     +   L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 6   RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 65

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV   +R +  S PV +L+   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 66  PRLDGTEVCTRIRRSS-SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124

Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR  A   + ++V G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  L+    E + K +DV I +LR ++   A     I TV G GY L
Sbjct: 185 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRL 234


>gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 245

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|271966751|ref|YP_003340947.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509926|gb|ACZ88204.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD  +  ++   L      V     G  G+        D ++LDLGL D+ G E
Sbjct: 3   QLLLVEDDAQVRSALTRALTERGHAVISAAAGMPGLTRALEDRPDLVVLDLGLPDLDGCE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR A  + PV + +      + VR L +GADDY+ KPF+   L ARIRA++RR R 
Sbjct: 63  VLRMLR-AVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGRD 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
                + +  G L +    +   + G R+ LT KE+ ++  L+ R    ++K   L  + 
Sbjct: 122 ADEGTAPVRVGGLLIEQAGREAFLDGVRLDLTPKEFDLLHYLAARPGQVVSKRELLTEVW 181

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
              Y G D    K +DV +  LR+KL  +A    Y++TV G G
Sbjct: 182 RMAYGGAD----KTVDVHLSWLRRKLGESAQAPRYLQTVHGVG 220


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G 
Sbjct: 64  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG-GE 121

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             S     ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 122 DDSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225


>gi|241664604|ref|YP_002982964.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309780574|ref|ZP_07675321.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp.
           5_7_47FAA]
 gi|240866631|gb|ACS64292.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308920729|gb|EFP66379.1| KDP operon transcriptional regulatory protein KdpE [Ralstonia sp.
           5_7_47FAA]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L+ E   V+  D  E G+      + DA+ILDLGL D  G ++
Sbjct: 12  VLVIDDEPHIRRFVRAALEEEGCEVHEADRVERGLIEAGTRQPDAVILDLGLPDGDGMQL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   ELVAR+R ++RR   R
Sbjct: 72  IRELRTWT-EVPVLVLSARVDERDKIEALDAGADDYLTKPFGVGELVARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+I  G++ V+L  + V   G  +HLT  EY+++ +L  R+ T +T    L  ++
Sbjct: 131 GEDGGSVIRFGEVEVDLARRLVSRNGEAVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPEHLLTEVGVGY 230


>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61
           IL++ED++A+A  +   L  E + V V D G   ++  +    D IILD+ L  DI G E
Sbjct: 7   ILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 67  VCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQER 126

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                          DL+++  ++       RI LT +EY+++ L     N  LT+++ +
Sbjct: 127 RRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVIM 186

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ G D P E  +++V++  LR+ L  A G    ++TV G GY LR
Sbjct: 187 ERVW-GYDFPGESNVLEVYVSNLRRHL-EAGGEPRLLQTVRGAGYALR 232


>gi|227497919|ref|ZP_03928099.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832655|gb|EEH65038.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 222

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +      E + V     G+    L +  + D I+LDLGL DI G +V
Sbjct: 4   VLLVEDDPAISEPLARAFGREGYEVRAHGTGKGA--LAEVADADIIVLDLGLPDIDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++TP+ +L+  S   D V GL +GADDY++KPF   EL+AR+RA VRR+ G 
Sbjct: 62  ARQVRSQGLTTPILMLTARSEATDLVVGLDAGADDYVTKPFRLAELLARVRAQVRRASGE 121

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GD+ V +      V    + LT +E++++ +L          E  L  ++  
Sbjct: 122 PTEEDLSVGDVRVEVAQHRAFVGSRELQLTTREFELLRVLVRAGGAVTASEDILKEVWGE 181

Query: 182 RDEPEVKIIDVFICKLRKKLSN 203
                 + +D+ +  LR+KL +
Sbjct: 182 DPTASQQALDMHVTWLRRKLGD 203


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+SE + V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +      +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYAL 225


>gi|329122103|ref|ZP_08250711.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
 gi|327466910|gb|EGF12426.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IE D  +AH I+  L+  +F   V   GE  ++L    + D IILD    DI G ++
Sbjct: 5   VLIIEKDINVAHFIQGKLEEADFTCLVDYSGEAAVDLAGQKQVDVIILDSDSLDIEGSKL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R    S P+ ++S  + +E KV+  +SG DDY+ KP+  +ELVARI A++RR   H
Sbjct: 65  ISDVRAVS-SLPIVVISSDADVEKKVQLFESGVDDYLVKPYATKELVARIHALLRR---H 120

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +  IV        DL +  +   V +  + I LT KE+ ++  L   KN  L ++  + 
Sbjct: 121 KEPQIVVDPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +  I+DV+I  +R K+ +   GK Y+ TV G GYV+R+
Sbjct: 181 KVWGYEYSGKTNIVDVYIRYIRSKI-DEKFGKKYVHTVRGIGYVVRD 226


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   + L L++E F V   + G+  +++ K    D ++LDL +  + G+ V
Sbjct: 4   ILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDGWTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR  +   P+ +L+      D+V GL  GADDYI KPF+  ELVAR++A++RR+ G 
Sbjct: 64  CKMLRRER-KIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEGI 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H   ++      +N   + +E+ G  I+LT KE++++ +L+       +++  L  +
Sbjct: 123 GEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEMV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      + + +D  I +LR KL        YI+T+ G GY
Sbjct: 183 WGFDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGY 223


>gi|313681777|ref|YP_004059515.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154637|gb|ADR33315.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD A+   +E+ L +  ++      G++G+          ++LDLGL D+ G E 
Sbjct: 5   ILIIDDDSAIRKLLEVALDAAGYHPVTIATGKEGLNRAAIEAPALVLLDLGLPDMDGKEF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L   R     +PV +LS  S   +K+  L+ G DDY++KPF   EL+ARI+A +RR   S
Sbjct: 65  LSQFREWS-QSPVIVLSARSGEAEKIAALEGGCDDYLTKPFGTGELLARIKASLRRRGIS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S +++G+LS+++ + TV +    + LT KE+ ++++L       LT    L  ++
Sbjct: 124 MGDNTSGLISGNLSLDIASHTVMLNNEELKLTPKEFDLLKILMQNSGKVLTHAWLLKEIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + E   + VFI +LR+K+   +     I T  G GY
Sbjct: 184 GIGYQNETHYLRVFINQLRQKIETDSTRPKRIVTETGIGY 223


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 9/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L++E ++V     GE+ ++  K      +ILD+ +   P  + 
Sbjct: 4   ILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMM---PRMDG 60

Query: 63  LRA-LRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +RA L++ +IS TP+ +LS      DK+ GL +GADDY+ KPFN  EL+AR++A +RR  
Sbjct: 61  IRACLKIREISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQA 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    SLI+  DLS++    +V+++G+ I LT  E+ ++ LL+       + E    
Sbjct: 121 LIGKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++          + V I  LR+KL        YI+TVWG GY
Sbjct: 181 NVWKAPYGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGY 223


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL+  +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     +++V GD+ ++ + + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 ASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYAL 225


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A+ +   L ++ F+V       D + +      DA+ILD+ L  + G+ +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR +R      PV  L+   S+EDK+ GL  G DDY++KPF+ EE+VAR+R I+RR   S
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  +S  +V  D+ +N +   V   G  + L+  E+ ++    +     L+K   L H+
Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILEHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      ++ +++ ++  LR+K+    G K  ++T+ G GYVLRE
Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKIDT--GEKKMLQTLRGVGYVLRE 238


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+D+K L   +    + E F+V V   GE+ + + +   FD IILDL L  I G 
Sbjct: 17  MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +   +R  +    + +L+      DK+ GL+ GADDY++KPFN  EL+AR+R ++RR  
Sbjct: 77  TLCNRIR-QQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G  +       DL V++ ++TV      I+LT KE+ ++ LL   K     +E     +
Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + G    + + IDV +  LR+KL +       IET WG GY  R++
Sbjct: 196 W-GEPCYDTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV   +   E
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKE 239


>gi|254250133|ref|ZP_04943453.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124876634|gb|EAY66624.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 236

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 17  MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  I++    + D++ GL SGADDY+ KPF  +EL+ARIRA+ RR  
Sbjct: 77  SVLAALRRRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHA 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 137 GRAQTTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 197 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 230


>gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V     G DG+ L +   +D IILD+ L ++ G+
Sbjct: 1   MRILVVEDELKAAEYLHQGLTESGYIVDHAVNGADGLHLAQQQVYDLIILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    ST V +L+    + DK+RGL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  SVLEQLRRTH-STRVMMLTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ LL  +    LT+   ++ ++
Sbjct: 120 NIPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFALLHLLMRQSGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +    K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKIDDPFDSK-LIHTLRGVGYVL 220


>gi|17547806|ref|NP_521208.1| response regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|17430111|emb|CAD16796.1| probable response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L++E   V+  D    G+      + DA+ILDLGL D  G  +
Sbjct: 12  VLVIDDEPHIRRFVRAALEAEGCEVFEADRVARGLIEAGTRQPDAVILDLGLPDGDGMSL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   EL+AR+R ++RR   R
Sbjct: 72  IRDLRTWT-EVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+I  GD+ V+L  + V   G  +HLT  EY+++ +L  R+ T +T    L  ++
Sbjct: 131 GEDGGSIIAFGDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGY 230


>gi|331268661|ref|YP_004395153.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329125211|gb|AEB75156.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E+F V  +  G D + +      D IILD  L DI GF
Sbjct: 1   MKILVVDDEISILQLIKMTLELESFEVITSKTGLDSLNIIIRENIDLIILDAMLPDISGF 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++   ++  IS  P+ +L+    + DK+ GLQ GADDYI+KPFN  EL+ RI+ I +R 
Sbjct: 61  NLIA--KIKNISDIPIIMLTAKDDMNDKLLGLQLGADDYITKPFNSTELILRIKIISKRM 118

Query: 120 RGH---AQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +    ++ ++ G L +   + K +      I LT KE++++  L   K    ++E  L
Sbjct: 119 NKNILQEKNELLVGKLKILKKERKLIIDSKEEIVLTYKEFEVLNCLCENKGKVFSREELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++    E   + +D+ I +LRKKL      +NYI+T++  GY L
Sbjct: 179 NKVWGYDFEGTTRAVDILIQRLRKKLGKY---QNYIKTLYKAGYKL 221


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  +   +++ L+ E + +     G + IE     ++D I+LDL +  I G E
Sbjct: 6   RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  ACKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++LIV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  ++     I TVWG GY
Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGY 231


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  +      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD---AIILDLGLTDIPG 59
           IL+++DD  L   +   L+  +++V   D+  + + L K+ +      IILD+ +  I G
Sbjct: 5   ILIVDDDIKLCKMLSRYLRDYSYSV---DVINNPLMLEKYLKSSKPSVIILDIMMPHING 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           F++ + LR      PV +LS    +ED++ GL++GADDY++KPF   EL+ARI A+++R 
Sbjct: 62  FDLCKKLR-KNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRF 120

Query: 119 --SRGHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             S   A +  V   G+LS++ D     + G  + LT  E+ ++ L+       L+++  
Sbjct: 121 EHSEDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRDRL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            N L     +   + +D+ + +LR KL++      YI+TVWG GY+ 
Sbjct: 181 YNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMF 227


>gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  KLLSNIRKSK-PMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR
Sbjct: 64  LCRRLR-ARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     +++  GD+ ++ D + V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 183 VW-GRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYAL 225


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A      L++  F V +   G  G +     + D ++LD+ L  + GF+
Sbjct: 3   KILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ ++S      DK+RGL  GADDYI KPF+  ELVAR++A ++R R 
Sbjct: 63  VCRRIR-EKRNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    L+   DL+++     V ++G  I +  KE+ ++  L+       +KE    
Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +   + V + ++R+K+  +     YIETVWG GY  R+
Sbjct: 182 RIWGEDSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRFRK 228


>gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 217

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++A+A+ I + L    +   +   GE+  +      +D I+LD+ L  + G+
Sbjct: 2   IKILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSYDLILLDIMLPKLNGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   +   +  PV  L+ M   + KV+GL+ GA+DYI+KPF   EL+AR+  ++RR +
Sbjct: 62  EVLEYAK--SVDIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVLRRYK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q L +  D+ ++  ++ VE  G  + LT KEY+++ L    KN  L +E     ++ 
Sbjct: 120 KTEQKLRLY-DIEIDTQSRRVERGGREVDLTIKEYELLLLFLRNKNRALYRETIYESVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G      + +D+ + +L+KKL    G + +I  ++  GY L
Sbjct: 179 GEYSGAGRTVDLHVQRLKKKL----GLEEHITAIYKVGYRL 215


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    +NV     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + S      +I   +L ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 7/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +A+ +++ L     +  +   G  GIE      +D IILD+ L  + G E
Sbjct: 5   KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I  P+ +L+  S  +DKV  L +GADDYI+KPF+  EL AR+ A +RR R 
Sbjct: 65  VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +   +    +   D   ++ + H+       I +T KE+ ++ L       T ++   
Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L+ ++          ++  I +LR K+        YI TVWG GY      K  +
Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKFNNQLKKSS 239


>gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis
           Et1/99]
 gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 235

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 114/217 (52%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N++ +    G++ ++  K +  D ++LDL L  + G  V
Sbjct: 10  ILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHAPDLVLLDLMLPGMDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++      D++ GL+ GADDYI KPF+  E+VAR++AI++R +  
Sbjct: 70  CRELRSFS-ELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRCQRG 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +Q  +    L V+            + LT  E+++++ LS +     ++E  LNHLYD  
Sbjct: 129 SQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + ID  I  LR+KL      + +I  V+G GY
Sbjct: 189 RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGY 225


>gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  + + +  ML    ++V     G + +   + YEF  ++LDL L  + G 
Sbjct: 5   VNILIVEDDMDINNLLSKMLSKRGYHVRQAYSGTEALMCLEHYEFQLVLLDLMLPGMVGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E++  +R  K + P+ ++S   + + K+  L  GADD+I KPF+  E++AR+ A +RR  
Sbjct: 65  EIICQIRKLK-NMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYM 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+++   DL +N D   V ++G  I +T KE+ ++ELL        TK    
Sbjct: 124 VFSNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +   ++V I  LR KL+ A     YI TVWG G+ + E
Sbjct: 184 EQVWNDEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMNE 231


>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
 gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD ++   + L L    + V     G +GI L      D I+LDLGL DI G E
Sbjct: 4   KILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDIDGSE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR +R ++   P+ ++S      +KV  L  GADDY++KPF+  EL+AR+R  +R+   
Sbjct: 64  VLRQIR-SQSEVPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARVRVALRKKTP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   + + V   L V+ +   V V+   +HLT  E++++ LL       LT    + +++
Sbjct: 123 RVVKEKVFVLDGLRVDFEKYKVYVEDREVHLTPIEFKLLVLLIEHAGKVLTHSFIIRNIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + + VF+  +R+K+   +    YI T  G GY
Sbjct: 183 GYSSCEDSQSLRVFMANIRRKIEKDSSHPRYILTEVGVGY 222


>gi|291529349|emb|CBK94935.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 220

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+E +       G++G +  +   +D ++LD+ L +I G+E+
Sbjct: 4   ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNRYDLLLLDIMLPEINGYEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R     TPV I+S M  +++++RGL+ GADDYI KPF   EL+AR+  ++RR++  
Sbjct: 64  LDYVRRIG-DTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQRM 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ L +  D++++  ++TV   G ++ LT KE+ ++  L   KN  L++      ++   
Sbjct: 123 AERLEIE-DVAIDPKSRTVTKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQEE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +D  + +LRKKL         I TV+  GY L
Sbjct: 182 YTGETRTLDSHVQRLRKKLD----WNEKIVTVFRIGYRL 216


>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 257

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K +   +   L +  + V     G++ +E      +D I+LDL L  + G 
Sbjct: 32  LRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 92  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 151

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++  +   +    +G  + LT KE  ++E L +     +++E  + H++D
Sbjct: 152 VQNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LRKKL    G    +  V G GY +RE +
Sbjct: 212 ATADSFSGAIRVHMSSLRKKLKAELGYDPILNKV-GEGYKIREES 255


>gi|227327873|ref|ZP_03831897.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 217

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +LIEDD+ +   ++  L    FN+     G+ G    K   +DA++LDL L  + G ++L
Sbjct: 1   MLIEDDRLIGDGLKAGLNKLGFNIDWFMEGKAGAAALKAAPYDAVVLDLSLPGMDGMDIL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R  R A    PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  G  
Sbjct: 61  RQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRRRHGQL 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           Q  +  G +S+   +++V +    + L  +E  ++EL  L  +  LT+      LY   D
Sbjct: 121 QPTLTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPSRVLTRAQLEEKLYGWDD 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     ++V I  LRKKL     G  +I TV G GY+L
Sbjct: 181 DVSSNAVEVHIHHLRKKL-----GAGFIRTVHGVGYIL 213


>gi|260222855|emb|CBA32840.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 245

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD AL  +++  L      V V   G   ++     + D ++LDL L  + G 
Sbjct: 22  MHLLLIEDDPALHTTLQRSLVRAQMRVDVCSDGSVALQRWTELQPDVVVLDLSLPGVDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   + TPV IL+   ++ DKV GL +GADDY+ KPF+ +EL AR+RA+ RR+ 
Sbjct: 82  DVLKQARRNGLRTPVLILTARGTVGDKVLGLNAGADDYLPKPFDLDELEARVRALHRRNA 141

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S +  G+L ++  +  +  +   + LT KE  ++  L  R    ++KE     
Sbjct: 142 DNPPPQSSDLQVGELRLDRISGAIYHRHQVMDLTPKELALMGALMSRPGHAVSKERLFEV 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++ G+ + + + I+V + +LRKKL+     +  + T+ G GY+L+
Sbjct: 202 VFPGQADVQFEAIEVVVYRLRKKLTAT---RVSLVTLRGLGYLLK 243


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   +  +L  E F+V   + G +  ++ +    D IILDL L    G  +
Sbjct: 67  ILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLPGEDGLSI 126

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R ++ + P+ +L+  +   D+V GL+ GADDY+SKPF   EL+AR+RA++RR++  
Sbjct: 127 CRRMR-SEGAFPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRRTQSQ 185

Query: 122 --HAQSLIVTGD-LSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A S   + D   ++LDA+ + +  G    LT  E+ ++    LR    L+++  L+ 
Sbjct: 186 PFQAASRRYSFDRFVIDLDARQLTDEDGAPATLTSAEFDLLTCFVLRPRRVLSRDQILDW 245

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +    +P  + +D+ + +LRKKL + + G   I TV   GY+L
Sbjct: 246 THGRTADPLDRTVDILVSRLRKKLESLSPGNTLISTVRNGGYLL 289


>gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR
 gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR
 gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           COL]
 gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. Newman]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 118/216 (54%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  + + I   L+ E+ + Y    GE  ++L +    D  ++D+ +  + GF++ 
Sbjct: 5   LVVDDDPRILNYIASHLQIEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGFQLC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR   ++
Sbjct: 65  NTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINS 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++    
Sbjct: 124 NSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWGYDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++L         IETV G+GY
Sbjct: 184 EGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  LA  +   L++  +       G D I L K      I+LDL L    G 
Sbjct: 12  LKILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLMLPGSSGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR  
Sbjct: 72  SICRDIRQFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCV 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +     L ++        QGH + LT  E+++++ LS++     T+E+ LN+LYD
Sbjct: 131 RPGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  + ID  I  LR+KL +  G K +I  V+G GY
Sbjct: 191 DYRVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGY 229


>gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRADDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|225575180|ref|ZP_03783790.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037588|gb|EEG47834.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM
           10507]
          Length = 238

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 7/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + L+            ++ +E  +  E D ++LD+ L ++ G+E+
Sbjct: 23  ILVVDDEKKINDLISMNLEMVGHRAIQAFTSKEALEWNQRAELDLVLLDIMLPELDGYEL 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L      K   PV  L+   S+ DKV+GL+ GADDY++KPF   EL+AR+  ++RR  G 
Sbjct: 83  LPYF--MKKQVPVIYLTAKDSLMDKVKGLKLGADDYVTKPFESIELLARVETVLRRC-GR 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +     G+++VN   + V    + + LT +E+ ++E+L    N  L++E  L   +   
Sbjct: 140 QEKEFCLGEVTVNFAQRKVFRGQNPVELTAQEFALLEVLIRNCNLALSREQLLEQAWGYV 199

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E E + +D+ I +LRKKL    G +  IETV+  GY L
Sbjct: 200 YEGETRTVDIHIQRLRKKL----GWEKEIETVYKYGYRL 234


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +  D+   S+ +     EV  H   + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +I+DV I  LR KL +       I+TV G GY L
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKL 228


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL +DD  L+  I+     E + V     G + ++L      D +ILD+ + ++ GF
Sbjct: 2   VKLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVMMPELDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R AK   PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR+ 
Sbjct: 62  ETLKLIR-AKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAA 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    + +V+G+L +    ++V ++G  I LT  EY ++E +       LTK+    
Sbjct: 121 NDKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELSE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +     + +D+ I  LRKK+     G+  I+TV G GY+ 
Sbjct: 181 KALGRKLTMYDRSLDMHISNLRKKVGTLINGEPRIKTVRGVGYIF 225


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 12/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ L   I   L+ E   V V   GE+G  + K  + D +ILD  L  + G EV
Sbjct: 4   ILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMDGVEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R +R   I  PV +L+      +KV GL+ GADDY++KPF+  EL AR+RA++RR+  G
Sbjct: 64  CRKIRETSI-VPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAFG 122

Query: 122 HAQSLIVT--GDLS---VNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +S   +  G LS   + LD   + V+++   + LT KEY+++EL         ++   
Sbjct: 123 RERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAYL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ +++       + +D  I +LRKK      GK  IETVWG GY
Sbjct: 183 MDRIWEADYLENDRTVDTQISRLRKKF--GLYGKA-IETVWGTGY 224


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNHQAGAVQKLDFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/219 (29%), Positives = 120/219 (54%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF
Sbjct: 2   VQCLVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR  
Sbjct: 62  QLCNTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++ S    G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  ++ 
Sbjct: 121 INSNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E + + +DV I +LR++L         IETV G+GY
Sbjct: 181 YDYEGDERTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE G+EL     +D I+LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ I++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +   +  D+ ++L AK V ++   ++LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKID---VDNKYIHTIRGFGYMFQ 223


>gi|229546063|ref|ZP_04434788.1| response regulator [Enterococcus faecalis TX1322]
 gi|256852903|ref|ZP_05558273.1| response regulator [Enterococcus faecalis T8]
 gi|229308836|gb|EEN74823.1| response regulator [Enterococcus faecalis TX1322]
 gi|256711362|gb|EEU26400.1| response regulator [Enterococcus faecalis T8]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SR----GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +      H  S        ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 181 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 231


>gi|218132898|ref|ZP_03461702.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991771|gb|EEC57775.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +       LK+  + V   D G+           D ++LD+ L DI G E+
Sbjct: 16  IYVVEDDQNIREIESFALKNSGYIVESFDCGKTFFNKVHNKVPDLVLLDIMLPDIDGLEI 75

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ ++      + PV +++  SS  DKV+GL  GADDY++KPF   EL++R++AI+RRSR
Sbjct: 76  LKRMKSDFELCNIPVIMVTAKSSEIDKVKGLDQGADDYMTKPFGVMELISRVKAILRRSR 135

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + + +   GD+ +N +   V V    + LT KEY +++LL       +++E+ ++ ++
Sbjct: 136 NTSDEKIFKAGDIIINEERHAVYVNDEPVELTFKEYNLLKLLISNYGIVMSREVIMDRIW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E + +D+ I  LRKKL  +    + I+TV   GY +
Sbjct: 196 GTSFEGESRTLDMHIKTLRKKLGESG---SMIKTVRNVGYAI 234


>gi|167584571|ref|ZP_02376959.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEHGLKQEGFAVDWVKDGDAASLALRTTGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  +++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SVLAALRRRDETLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAVGPLRLDPVKHLVWLDDAEVTLSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus
           kaustophilus HTA426]
 gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus
           kaustophilus HTA426]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +  +I+  L+  ++ V     G + +++    +FD I+LD+ +  I G E
Sbjct: 5   KILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIN-DDFDLIVLDIMMEGIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  ++  P+  +S  +  EDKV+ L  G DDYI+KPF+ +EL ARI + +RR   
Sbjct: 64  LCTIIR-DRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREER 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++ LT KEY++++LL L K    +KE     +
Sbjct: 123 IRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + ++  +   I  +RKK+ +     +YI+T++G GY
Sbjct: 183 WGIDSDSQLDTVTESIKNIRKKIKDVDPETSYIQTLYGLGY 223


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 20/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR  G
Sbjct: 98  LCRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRF-G 155

Query: 122 H-------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           H             A   +  GDL V+ +   V   G RI LT  E +++   S    T 
Sbjct: 156 HAGGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTV 215

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 216 LSRDRLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLR 264


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S++ +L++  + V     G + +E       D ++ D+ +  + G  +
Sbjct: 7   VLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLGL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A  + P+ +L+  S + D V GL +GADDY+SKPF  +EL+AR+RA+ RR+   
Sbjct: 67  CRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTTHL 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S     DL +  +A  V   G  I L+  EY ++ +L+      L++    + ++   
Sbjct: 127 PASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWGYA 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             P    ++V+I  LR+KL  A G    I+TV G GY L
Sbjct: 187 MTPASNSLEVYISYLRRKL-EAEGEPRIIQTVRGVGYRL 224


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFIKQQTEE 242


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 16/235 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL I+D++ +   I+  L+ E ++V+    G + I   K  + D +ILDL L  + G 
Sbjct: 1   MKILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGE 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+   +R ++K+  P+ +L+     +DKV G   GADDY++KPF+  EL  R++AI+RR+
Sbjct: 61  EICSKIRAISKV--PILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRT 118

Query: 120 RGH-AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
           +   A + I +   GDL ++  +  V+  G  ++LT  EY+++ +++   N   T+    
Sbjct: 119 KDDMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELI 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENA 225
           E  + + ++G D    + ID  I  LR+K+ +      YI+TV+G GY    ENA
Sbjct: 179 EKVMGYDFEGFD----RTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEENA 229


>gi|257069090|ref|YP_003155345.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256559908|gb|ACU85755.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 279

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 15/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+++IED+  +  +I   L +E + V     G  G+        D ++LD+ L    G 
Sbjct: 15  VRVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R ++ A    PV +L+      D + GL  GADDY++KPF+  ELVAR++A++RR R
Sbjct: 75  EVCRRIQ-ADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVR 133

Query: 121 GHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             A         Q  +  GDL ++   + V   G   HLT  E+ ++  L+    T LT+
Sbjct: 134 RAAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTR 193

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L  ++D  D    + +D  +  LR+KL     G + + TV G GY L
Sbjct: 194 EQLLADVWDWVDATGTRTVDSHVKALRRKL-----GSDLVRTVHGVGYAL 238


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L VN DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDIP-----YIKTVKGIGYKIDE 214


>gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
 gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +I++ L  E + V     G++ I++ K  E D +I+D+ +  + G  
Sbjct: 3   KILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEVDLLIMDVMMPRLDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R   +S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 63  ATLKIR-ENMSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQ 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R   QS   TG L +  D K V V G ++ LT  EY ++ LL   +    +    
Sbjct: 122 LGSTARSDNQSEFRTGGLVIRDDLKEVTVDGEKVKLTPIEYNILLLLVKNQGKVFSINQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++++         + V I  +R+K+        Y++ VWG GY
Sbjct: 182 YENIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGY 226


>gi|156976220|ref|YP_001447126.1| positive response regulator for pho regulon [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527814|gb|ABU72899.1| hypothetical protein VIBHAR_04992 [Vibrio harveyi ATCC BAA-1116]
          Length = 256

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL+EDD  LA  +++ LK +   V   T++ E   +  +   FD +ILD GL D  G +
Sbjct: 25  ILLVEDDDDLAELVQIHLKFQGHQVLRATNIAEAKAQYQQ-QSFDLLILDRGLPDGDGLD 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR   
Sbjct: 84  VCHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSH 143

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  +   +  +  G L +  +   V +    + LT  E+ +++ L+ R     +K+
Sbjct: 144 TTEVQTDKNLVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSKD 203

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 204 ELLDHVWNTNHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGY 250


>gi|153831657|ref|ZP_01984324.1| response regulator receiver domain protein [Vibrio harveyi HY01]
 gi|148872167|gb|EDL70984.1| response regulator receiver domain protein [Vibrio harveyi HY01]
          Length = 243

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL+EDD  LA  +++ LK +   V   T++ E   +  +   FD +ILD GL D  G +
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVLRATNIAEAKAQYQQ-QSFDLLILDRGLPDGDGLD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR  +   PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR   
Sbjct: 71  VCHYLRQKQDWNPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSH 130

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  +   +  +  G L +  +   V +    + LT  E+ +++ L+ R     +K+
Sbjct: 131 TTEVQTDKNVVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSKD 190

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 191 ELLDHVWNTNHSGYHHTVCSTINRLRSKLSLSGSDHHFIQTVWGVGY 237


>gi|254366310|ref|ZP_04982354.1| hypothetical two component transcriptional regulatory protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|308406239|ref|ZP_07669548.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu012]
 gi|134151822|gb|EBA43867.1| hypothetical two component transcriptional regulatory protein
           [Mycobacterium tuberculosis str. Haarlem]
 gi|308364040|gb|EFP52891.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu012]
 gi|323717630|gb|EGB26832.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CDC1551A]
          Length = 246

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 23  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 83  LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 142

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ ++
Sbjct: 143 TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRVW 202

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 203 SYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 243


>gi|238059052|ref|ZP_04603761.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237880863|gb|EEP69691.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 113/227 (49%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  +   +   L+     V       DG+        D ++LDLGL D+ G E
Sbjct: 3   RLLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALDNRPDLVVLDLGLPDLDGRE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR A  + PV + +      + VR L +GADDY+ KPF   +L ARIRA++RR   
Sbjct: 63  LLRMLR-AVSAVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARIRAVLRRGAA 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +V G L V+  A+ V + G  + LT +E+ ++  L+ R    +TK   L  +
Sbjct: 122 GAGAGDPALVVGGLRVDPRARQVTLDGVAVELTPREFDLLHHLAARPGEVVTKRELLTEV 181

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               Y G D    K +DV +  LR+KL   A    Y+ TV G G  L
Sbjct: 182 WQIPYGGAD----KTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRL 224


>gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+  I    +   F V V   G  G++L     FD I+ D+ L    G E 
Sbjct: 4   ILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNHFDLIVTDIVLPKKDGLEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              ++  K   PV +L+ + + +DK+ G  +GADDY++KPF   ELVARI+ +++R   +
Sbjct: 64  CNEIKALKPDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLLKRFSQQ 123

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H + LI+  D + +NL+ KTV      I LT KE+ +++ +       L++      ++
Sbjct: 124 RHQKVLILRYDGIEMNLEQKTVIRDHIPIKLTPKEFNLLKFMLENSERVLSRSEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   +     IDV+I  LRKK+      K  I T  G G++L++N
Sbjct: 184 ETHFDTGTNFIDVYINYLRKKIDKDFEVK-LIHTKAGMGFILKKN 227


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR    
Sbjct: 65  CRKVR-ESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V + ++R K+     G+  I TVWG GY
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGY 226


>gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R      PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-GVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPESALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 225

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 124/220 (56%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+++   ++  ML  E F V     GE G+        D ++LDL +  +PG E
Sbjct: 3   RILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLMMPGLPGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +ALR  +   PV +++   S  DKV GL+ GADDY++KPF++ ELVARIRA++RR R 
Sbjct: 63  VCKALR-QRSDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRRGRA 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++ +GD+ ++++   V V+   + L  KE++++ELL       +++E  ++ ++
Sbjct: 122 EELVPDVLESGDVRMDVERHEVAVRDEPVRLALKEFELLELLLRNSGRVMSREQLIDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + K +DV + +LR K+         + TV G GY
Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKIELDPSHPTALVTVRGLGY 221


>gi|260768553|ref|ZP_05877487.1| DNA-binding response regulator [Vibrio furnissii CIP 102972]
 gi|260616583|gb|EEX41768.1| DNA-binding response regulator [Vibrio furnissii CIP 102972]
 gi|315180264|gb|ADT87178.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Vibrio furnissii NCTC
           11218]
          Length = 223

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED + L  S+ + L    F    T  G++ + +     +D IILDL L  + G 
Sbjct: 1   MKLLIIEDSETLRRSLIVGLNHLGFATDDTGDGQEALSMALNNTYDVIILDLMLPGLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E+L+ALR  K  T V ILS  +  +D+V GL  GADDY++KPF+ EEL ARI  I+RR S
Sbjct: 61  EILKALRKHKKQTRVLILSAKTETQDRVEGLLQGADDYLTKPFSFEELHARILTIMRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   + S+NL  KT   +   + LT  E+++++ L    N  ++ E     + 
Sbjct: 121 LEQVDQTLTVDEYSLNLVDKTFHFEQQTVDLTPNEFKILQCLFAAPNRVMSVEQISEAVV 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              D      I+  +  +RKK+ + AGG   ++   G GYV
Sbjct: 181 GHFDYVAKNTIEAHLSAIRKKVRD-AGGTLPVKNKRGFGYV 220


>gi|239904794|ref|YP_002951532.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
 gi|239794657|dbj|BAH73646.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus
           RS-1]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  L   +   L  E F+         G+      + D ++LD+ + ++ GFEV
Sbjct: 4   LLLIDDDMELCELLGDYLHGEGFDTESVHNPMVGVTRAVSGQHDLVVLDVMMPELNGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R A    PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI+RR+   
Sbjct: 64  LRRIRAAS-QIPVLMLTARGEDVDRIVGLEIGADDYLPKPFNSRELVARIRAILRRTETG 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   I   D+ +N+  ++V   G  + LT  EY ++E+L       +++E    
Sbjct: 123 EPTPSKAGESISISDVVINVGGRSVLCNGKPLDLTSIEYSILEVLMRMAGKVVSREELAE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +     + +DV IC LRKKL   +     I+TV   GY+
Sbjct: 183 KAMGRKHSAYERSLDVHICSLRKKLGTHSLYGERIKTVRNMGYL 226


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKD 129

Query: 119 -SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 225

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SNDAASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+  +   +   L++  +    +  G DG    K  + D I+LD  L +I G E
Sbjct: 7   KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIE 66

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           VL+ +R    + KI  PV +L+  +  +DKV GL+ GADDYI+KPF+ +EL+ARI +++R
Sbjct: 67  VLKKIRQDADLKKI--PVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMR 124

Query: 118 R---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R   + G     +  G+L +NL    V++   ++ LT KE+++++LL   +   L++   
Sbjct: 125 RYGMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      E + +DV I  LRKKL  A   + YIET+ G GY
Sbjct: 185 LDEIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGY 229


>gi|170699931|ref|ZP_02890959.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170135136|gb|EDT03436.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  ++KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGSVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|308232561|ref|ZP_07664116.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu001]
 gi|308369225|ref|ZP_07416994.2| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu002]
 gi|308371446|ref|ZP_07667165.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu003]
 gi|308372648|ref|ZP_07667428.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu004]
 gi|308372732|ref|ZP_07667446.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu005]
 gi|308373812|ref|ZP_07667661.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu006]
 gi|308374977|ref|ZP_07667914.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu007]
 gi|308376223|ref|ZP_07668223.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu008]
 gi|308378462|ref|ZP_07668759.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu009]
 gi|308379612|ref|ZP_07669001.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu010]
 gi|308380801|ref|ZP_07669290.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu011]
 gi|308213647|gb|EFO73046.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu001]
 gi|308328380|gb|EFP17231.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu002]
 gi|308328785|gb|EFP17636.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu003]
 gi|308332627|gb|EFP21478.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu004]
 gi|308340118|gb|EFP28969.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu005]
 gi|308344106|gb|EFP32957.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu006]
 gi|308347908|gb|EFP36759.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu007]
 gi|308351776|gb|EFP40627.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu008]
 gi|308352559|gb|EFP41410.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu009]
 gi|308356510|gb|EFP45361.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu010]
 gi|308360458|gb|EFP49309.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis SUMu011]
          Length = 252

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 29  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 88

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 89  LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 148

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ ++
Sbjct: 149 TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRVW 208

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 209 SYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 249


>gi|299137815|ref|ZP_07030996.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600456|gb|EFI56613.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 224

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+K + + +   L  +   V ++  G++G +L     FD  +LD+ L  + GF
Sbjct: 1   MNILVVEDNKRIGNILRQGLVEDGHQVVLSQRGDEGRDLLISAPFDVAVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    + PV +L+   ++ D V GL  GADDY++KPF  +  +ARIRA+ RR  
Sbjct: 61  SVLEQVRAGNCTVPVLMLTAKDTMPDIVHGLNLGADDYLTKPFQIQVFIARIRALGRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++TGDL ++   ++       I LT KEY ++ELL  R N  +T+       + 
Sbjct: 121 VLQTKKLITGDLELDTVNRSARRGSDDITLTKKEYAILELLMRRVNQVVTRNQLREVGWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E     +D ++  LR K+ +  G  + I TV   GY
Sbjct: 181 YDAEVSDSSVDFYMHSLRSKI-DIKGHDSLIRTVRSLGY 218


>gi|228942401|ref|ZP_04104939.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975334|ref|ZP_04135890.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981970|ref|ZP_04142264.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228777731|gb|EEM26004.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228784316|gb|EEM32339.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817242|gb|EEM63329.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 219

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEVL 63
           +++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G+E+L
Sbjct: 1   MVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDGYELL 58

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +   
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L  ++
Sbjct: 119 NAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 GFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 217


>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
           winged helix family [Chromohalobacter salexigens DSM
           3043]
          Length = 223

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+   A  +   L    + V V   G DG  L +  +F+ IILD+ L  + G+
Sbjct: 1   MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R      PV  L+   ++E +V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  ELLRLIRRHG-QVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +      DL +++  + V     R+ LT KE+ +++LL  R+   L++ +  + ++ 
Sbjct: 120 LRERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V + +LR K+ +    +  I T  G GYVL +  
Sbjct: 180 MNFDSDTNVVEVAVRRLRAKVDDPF-TRRLIHTERGMGYVLEDRG 223


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ +  I GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R A+ S P+ +L+  SS  DKV GL++GADDY+SKPF  +EL+AR++A++RRS+ 
Sbjct: 65  LCRLIR-AESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  GDL + ++   V   G  +  + KE+ +   L   +    ++E  L 
Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P   + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVW-GYDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE 230


>gi|186682188|ref|YP_001865384.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464640|gb|ACC80441.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 244

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 22/248 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+ED+  L  +I+ +L  E    YV D   DG +  ++ E     +   I D  L 
Sbjct: 1   MRLLLVEDEADLGAAIKQVLSHE---AYVVDWFLDGSQAWQYLETGWTEYTLAIFDWMLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ + LR   ++ PV +L+    +E+K+ GL SGADDY+ KPF   EL+AR+RA+
Sbjct: 58  GVSGVELCKWLRSRHLTLPVLMLTAKDRMEEKIIGLDSGADDYLIKPFGMAELLARLRAL 117

Query: 116 VRRSRGHAQSL--------IVTGDLSVNLDAKTVEVQ-GHR----IHLTGKEYQMIELLS 162
            RR+     +L        +  G L +N     +  Q  HR      LT KE+Q++E   
Sbjct: 118 QRRASYVGATLTPQVQPRRLQVGCLILNYSTHELTRQYSHREKRVFSLTVKEFQLLEYFM 177

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              N  ++++  +N L++   EP   ++   I  LR+KL      ++ IET++G GY L 
Sbjct: 178 RHPNHIISRDQIINQLWEIGAEPVSNVVAAQIRLLRRKLGE-EDSESLIETIYGVGYRLN 236

Query: 223 ENAKDETC 230
            ++ +  C
Sbjct: 237 IHSAETGC 244


>gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA
           [Pseudonocardia sp. P1]
          Length = 232

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 130/237 (54%), Gaps = 16/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           MRIL+++DDKA+  S+    +S  FN Y  DL EDG   ++       DA++LD+ +  +
Sbjct: 1   MRILVVDDDKAVRDSLR---RSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVMMPRV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR A    P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++R
Sbjct: 58  DGLEVCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLR 117

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R             + +   DLS++ D + V   G  I LT  E+ ++ELL       LT
Sbjct: 118 RRVPDTDDGADPPSAALTFADLSLDPDTREVSRGGRSISLTRTEFSLLELLLAHPRRVLT 177

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   L  ++ G D P     ++V++  LR+K + A G    I TV G GYVLRE+  
Sbjct: 178 RGQILEQVW-GYDFPTSGNALEVYVGYLRRK-TEADGEPRLIHTVRGVGYVLRESPP 232


>gi|289556030|ref|ZP_06445240.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 605]
 gi|289440662|gb|EFD23155.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 605]
          Length = 272

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 49  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 108

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----VR 117
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     V 
Sbjct: 109 LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 168

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                AQ  +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ 
Sbjct: 169 TVDSGAQ--LVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDR 226

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 227 VWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 269


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 123/227 (54%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDK +   ++L L++E F V     GE+ +E+ +  E    ILD+ +  + GFE
Sbjct: 4   KILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLNGFE 63

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           + + +R  +IS  P+ ILS  +   DK+ GL  GADDY++KPFN  E++AR+++ +RR  
Sbjct: 64  LTKKIR--EISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCY 121

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++++  G+LS+N ++  +   G+ I +T  EY+++ LL        TK 
Sbjct: 122 NLKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKM 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +     E +   I V I KLR K+ + +    YI+T+ G GY
Sbjct: 182 QIYELIKGEYFESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGY 228


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR+RA++RR    
Sbjct: 74  TKRIE-AQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKL-----GASTIRTVHGVGYAF 234


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A      L+S  +   + + G+  +   K   +D I+LDL L    G++
Sbjct: 3   RILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  +I  P+ +++  +   D +RGL  GADDYI+KPF+  +LVAR+R+ ++R   
Sbjct: 63  ICRKIR-DEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     + +AQ  I   D+ +      V   G  + L  +E++++  L+   N   
Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +KE     ++      +   + V I +LR+KL +       IETVWG GY L
Sbjct: 182 SKEALFEKIWGFDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRL 233


>gi|170720399|ref|YP_001748087.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758402|gb|ACA71718.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 252

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  L   +   L+   F V     G +G+E      FD +++D+ L  + G + 
Sbjct: 25  ILAIEDDPVLGAYLHEELQRGGFQVTWCRNGAEGLETAGRQAFDVVLMDILLPGLNGLDA 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR  + +TPV ++S + +  D++ G Q GADDY+ KPF+  EL  RI AI+RR    
Sbjct: 85  LAQLR-RRSATPVILMSALGAEADRINGFQLGADDYLPKPFSIVELQVRIEAILRRVALE 143

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R H   L +  G+L  +     V   G +  LT  EY++ ++L+   +  L+K      +
Sbjct: 144 RRHQPPLGVACGELRFDETLCDVSFGGRQAGLTPSEYRLFDILNRNVDEVLSKPFLYQQV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +D+ + ++R+KL         I TVWG+GYVL
Sbjct: 204 LQRGYSRHDRSLDMHVSQIRRKLKGIGYLDRQIRTVWGKGYVL 246


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  112 bits (281), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   I+  L    F V     G   +   +    D IILDL L  + GFEV
Sbjct: 6   ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    +  + +L+      D+V+GL+ GADDY+ KPF+  ELVAR+RA+ RR R  
Sbjct: 66  CRQLRTFSDAY-ILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPRQS 124

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S +  G L+++ ++ TV + G  I+LT  EY+++ +L+       ++   L+ +
Sbjct: 125 GYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +  +++V I  LRKKL +      +I TV   GY
Sbjct: 185 WGNNYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGY 225


>gi|315648883|ref|ZP_07901977.1| two component transcriptional regulator [Paenibacillus vortex V453]
 gi|315275564|gb|EFU38918.1| two component transcriptional regulator [Paenibacillus vortex V453]
          Length = 219

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K++   I + LK    +   +  G D I+  K  +FD I+LD+ L  + GFE+
Sbjct: 4   ILVVEDEKSINDLITMNLKLVGHHFCKSYNGTDVIQFLKQEKFDLILLDIMLPGMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R   I  PV  L+   S+ D++ G + GA+DYI KPF   EL+ARI  ++RR++  
Sbjct: 64  MQHIRAYNI--PVIFLTAKESLSDRITGFELGAEDYIIKPFEIVELLARINVVLRRAKP- 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +  L V G+  V L  + V      + LT +E+ ++E+L   +N  L++E  L  ++   
Sbjct: 121 SDDLFVLGEAEVKLLERQVLKNDQPVELTAREFDLLEVLIRNRNIALSREKLLELVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E + +DV I +LRKKL    G +  I T++  GY  R NA+
Sbjct: 181 FLGETRTVDVHIRQLRKKL----GWEERIVTIFKLGY--RLNAE 218


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +LK E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            R LR  ++ST PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 64  CRRLR--QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGD 121

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G  A  ++  G +S++++   V V G ++ +  KE+ ++E L       LT+   ++ 
Sbjct: 122 SDGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+         + TV G GY
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGY 223


>gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 225

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +++D  + +LR K+ +       I TV G GY L   A
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAPA 225


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 19/233 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR  G
Sbjct: 98  LCRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRF-G 155

Query: 122 H------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           H            A   +  GDL V+ +   V   G RI LT  E +++   S    T L
Sbjct: 156 HAGGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 215

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 216 SRDRLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLR 263


>gi|291618320|ref|YP_003521062.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291153350|gb|ADD77934.1| CpxR [Pantoea ananatis LMG 20103]
 gi|327394710|dbj|BAK12132.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 226

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  G++     EF A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLSQYLITEGFDAQLVLTGSAGVQGALSGEFSAMILDIMLPDMSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-QQSRLPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVE 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   + ++  G+L++N   +  E +G    LT  E+ +++LL    +  +TK+   
Sbjct: 120 ELAPQQDKKEILQWGELTLNSARRITEWKGKTFDLTASEFNLLDLLLRSPDRVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KLS        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLSALTAESITIETVRSIGYRIR 226


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DDK L   +   L    ++V     G  G+E+ +   F A+ILD+ +  + GF
Sbjct: 11  IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR  +   PV +L+ M    D++ GL+ GADDY+ K F+  EL+AR+RA+ RR R
Sbjct: 71  EMLKQLR-KQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129

Query: 121 GH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                        + +  G+L ++L A+T  + G  ++LT  EY ++  L+      L++
Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189

Query: 172 EMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  L+ +    YD  D    + +DV I  LR+KL        +I+TV   GY+  +
Sbjct: 190 DQLLDAVAGRSYDVFD----RSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFND 241


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 13/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +  +IE+ LK++N+NV+    G + +E+ +  E   +++D+ +  + G + 
Sbjct: 4   ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDGTKT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    S P+  LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +RR   +
Sbjct: 64  TIKIRETS-SVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTNY 122

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A       +++I  G + +  D+K + V G  I +T  EY+++ LL    N   + E   
Sbjct: 123 ANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEIY 182

Query: 176 NHLYDGRDEPEVK--IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++    EP      + V I ++R+K+    G   Y++ VWG GY
Sbjct: 183 EKVW---KEPAYNPDTVTVHIRRIREKIEINPGEPRYLKVVWGVGY 225


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL AR+ A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRRT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-AKPLLHTVHGVGYRLAEG 223


>gi|84387482|ref|ZP_00990501.1| DNA-binding response regulator ColR, putative [Vibrio splendidus
           12B01]
 gi|84377735|gb|EAP94599.1| DNA-binding response regulator ColR, putative [Vibrio splendidus
           12B01]
          Length = 228

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +LL+EDDK LA S+   L+ EN        G  G  L K   +D I+LDL L  I GF
Sbjct: 7   INVLLVEDDKELAASVAEFLEFENIKCDHAYNGLSGFTLAKQNYYDVILLDLMLPKIDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR     TP+ +L+   +++DK  G  +G DDY+ KPF  +EL  RI+A+ +R R
Sbjct: 67  TVCERLRDDGDDTPILMLTAKDTLQDKEAGFNAGTDDYLIKPFAMKELALRIKALSKR-R 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +V GDL  +L  + V      + L      ++ELL  R    +++      L+ 
Sbjct: 126 SSQQKRLVRGDLVYDLQNQQVSRSDQILELNRLNRMLLELLMRRSPQVVSRSEIEECLWP 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D PE   I V + +LR+K+       N IETV G+G  ++E  
Sbjct: 186 N-DAPESNNIKVQVYQLRQKIDKPFES-NLIETVVGQGLRIKEQP 228


>gi|325508922|gb|ADZ20558.1| Response regulator (CheY-like receiver domain and a HTH)
           [Clostridium acetobutylicum EA 2018]
          Length = 225

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 7/217 (3%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD A+++ I+L L    +       GE  ++L +   FD I+LD+ L  I GF + + +
Sbjct: 16  EDDAAISNLIKLNLNMAGYISEAVYNGEAALDLIEGRNFDLILLDIMLPKIDGFSLFQKI 75

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           +   I  PV  L+  +S+ DKV GL+ GADDYI+KPF+  EL+ARI  ++R    + +SL
Sbjct: 76  KYKGI--PVIFLTAKTSVTDKVSGLRMGADDYITKPFDGMELLARIDNVLRHYDKNEKSL 133

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
               D+ V L+   ++  G  I LT KE+++   L   KN  LT+E     L+      +
Sbjct: 134 KFE-DIEVQLEEMRLKKNGQIIDLTVKEFELAAYLIKNKNIVLTRERIAEELWGYDYLGD 192

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + ID +I K+RKKL      K+ ++T++  GY L E
Sbjct: 193 CRTIDNYIQKIRKKLD----WKDKVKTIFKMGYRLEE 225


>gi|168215727|ref|ZP_02641352.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182382020|gb|EDT79499.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPTLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 19  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 79  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 138

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 139 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 198

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 199 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 245


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   +   L++E F+V     G +G ++ +  +    ++D+ + ++ GFE
Sbjct: 3   QILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR++    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS  
Sbjct: 63  LCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSNQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL--- 178
            +++ I  G+++++  +  +++      +  KE++++  L+       T+E  +  +   
Sbjct: 123 ASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQR 182

Query: 179 -YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            YDG D    + +DV I +LR        G   + TV G GY L E  
Sbjct: 183 DYDGSD----RTVDVHIKRLRDHFDEEKDGIRIV-TVRGIGYKLEETT 225


>gi|311278781|ref|YP_003941012.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747976|gb|ADO47728.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 224

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ LAH +E  L    F V     G     L +  ++   +LD+G+  + G 
Sbjct: 1   MRLLLAEDNRELAHWLEKALVQGGFAVDAVSDGRAADHLLQSEKYALAVLDIGMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + PV +L+  S++ D+V GL +GADDY+ KPF  EEL AR+RA++RR+ 
Sbjct: 61  EVVQRLRRRGQTLPVLLLTARSAVADRVVGLNAGADDYLPKPFELEELDARLRALLRRAE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q +   G+L+ + D     +QG  + LT +E+ ++ +L  R+   ++++     ++ 
Sbjct: 121 GQVQEMQQLGELAFH-DEGYFLLQGKNLALTPREHALLTVLMYRRLRPVSRQQLFEQVFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+   + I+++I +LRKKL ++      I T+ G GYVL
Sbjct: 180 LSDDVSPESIELYIHRLRKKLQDS---NVRITTLRGLGYVL 217


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ ++ +++   LK E F V     GED +E  + +  D +ILD+ +  + G+E
Sbjct: 4   KILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K    + +L+  + I DKV GL+ GADD++SKPF+  EL+ARI+A+VRR   
Sbjct: 64  VCRRLESRK-GIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + +V G L V   ++T E+    + LT KE+ ++ LL        T++  L 
Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++        + +D+ I +LRKKL      +  ++TV+G GY
Sbjct: 183 QVWSFDYVGGTRTVDIHIQRLRKKLEPH---QAILQTVYGIGY 222


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD+ +   +   L+SE + V     GE+ ++L K   FD ++LD+ +    G++V
Sbjct: 5   ILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKSGYDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R +R      P+ +L+      DKV GLQ GADDYI+KPF   EL+ARI A++RR+ R 
Sbjct: 65  CREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRARRN 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTK 171
           H ++        L   G+  +  DAKT ++   R  I L+ +E ++++   L  N  L++
Sbjct: 125 HEEAKKGENVPDLFKFGESQI--DAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  LN ++        + +D  I +LRKK+        +I TV   GY
Sbjct: 183 DQLLNAVWGIDYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGY 230


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 113/224 (50%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  + L L +E F V+      D     +    D  ILD+ L D+ GFE
Sbjct: 4   KILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K   PV +L+      DK+ GL  GADDYI+KPF   E+VAR++A +RR   
Sbjct: 64  LCQKIR-EKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S      +I    L +N       + G  + LT  E+ ++ +L  +K   ++ E   +
Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182

Query: 177 HLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ D         I V I  LRKK+ ++     YI+TVWG GY
Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGY 226


>gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032]
 gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis
           z3032]
          Length = 230

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + L+ED+ +++ ++  +++ E F V   + G   ++  +    D ++LD+GL DI GFE+
Sbjct: 6   VWLVEDETSISEALAYVMQLEGFTVRTFERGLPALDAARQALPDLVVLDVGLPDISGFEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R L  A  + PV  L+  S   DK+ GL+ GADDY++KPF+  E+ AR+R I+RR    
Sbjct: 66  CRQLLAAYPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQ 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  AQ+++  G   +N DA  +      + LT  EY +++ L L      +++  ++ ++
Sbjct: 126 QSGAQTVVRAGRFELNDDAAQIAFCDQPLPLTRYEYLLLKTLLLAPGRVYSRQQLMDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++   + +D  I  LR KL       + I T  G GY L  N
Sbjct: 186 GDANDSFDRTVDTHIKTLRAKLRAVNPEASPINTHRGLGYSLAVN 230


>gi|107025799|ref|YP_623310.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116693018|ref|YP_838551.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170737720|ref|YP_001778980.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105895173|gb|ABF78337.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116651018|gb|ABK11658.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169819908|gb|ACA94490.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 220

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRATGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + P  I++    + D++ GL SGADDY+ KPF  +EL+ARIRA+ RR  
Sbjct: 61  SVLAALRRRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|294676208|ref|YP_003576823.1| winged helix family two component transcriptional regulator
           [Rhodobacter capsulatus SB 1003]
 gi|294475028|gb|ADE84416.1| two component transcriptional regulator, winged helix family
           [Rhodobacter capsulatus SB 1003]
          Length = 217

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/221 (37%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA ++   L++E   V +    E         ++  +ILDLGL D  G 
Sbjct: 1   MRLLLVEDTADLAETLARHLRAEGHAVDLATDVEGARTALAVSDYACVILDLGLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R     TPV I +    I D++ GL +GADDY+ KPF+  EL ARIRA  RR++
Sbjct: 61  AVLRDCRDRGDRTPVIIATARDQISDRIAGLDAGADDYVVKPFDLNELSARIRAHARRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++ IV G+L V+     V   G  + LT +E+ + E L   +   L K      LY 
Sbjct: 121 GVPEARIVLGELEVDRALARVWRAGAEVRLTAREWALFEALLGARGRVLGKSALEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D  E   I+V++ +LR KL     G   IET  G GYVL
Sbjct: 181 FDDRIEGNAIEVYVSRLRAKL-----GPAVIETRRGLGYVL 216


>gi|283834685|ref|ZP_06354426.1| hypothetical protein CIT292_08903 [Citrobacter youngae ATCC 29220]
 gi|291069611|gb|EFE07720.1| transcriptional regulatory protein CpxR [Citrobacter youngae ATCC
           29220]
          Length = 232

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F+V V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 241

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED+ ALA ++   L+ E + V V   G   +E    +  D ++LD+ L  + G +
Sbjct: 4   KVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLNGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +TPV  LS   + E++V GL+ G DDY++KPF+  E + R++ ++RR   
Sbjct: 64  VCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRRRAE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTG-KEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +++       ++  A T  ++  R  + G +E  ++ LL  R    ++++  L+ ++ 
Sbjct: 124 TPRAVYEFAGHRIDFRAWTAYLKDGRKEVLGEREMAILRLLIERAGQVVSRDEILDRVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               P  + ID F+ +LR+          ++ TVWG GY
Sbjct: 184 QEVFPSSRTIDNFVVRLRRLFEPDPARPVHLHTVWGVGY 222


>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 12/224 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+DDK L   +   L+ + F V     G + +   +  E+D ++LD+ L  + G +V
Sbjct: 5   VLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEYDTLVLDIMLPGMMGLDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R     TPV +L+      D++ GL+ GADDY+ KP N  EL AR+RAI+RRS+  
Sbjct: 65  LRKIR-DFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILRRSQLT 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q+ +  G  ++N   +T   +G  ++LT  E+ ++ +L  R    + K+      
Sbjct: 124 DTNESQTEVSVGSTTLNSANRTAIHRGVSLNLTSAEFNLLMILLKRAGKIVDKDTLSQ-- 181

Query: 179 YDGRDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +G   P     + +DV + K+R+KL+N AGGK  I +V G GY
Sbjct: 182 -EGLGRPLSAYDRSVDVHVSKIRRKLAN-AGGKELIVSVRGLGY 223


>gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 227

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            ++L++ED+ ++   +   L+S+ + V    L  +  E    +  D ++LD+ L D  GF
Sbjct: 3   FKVLVVEDEISINDILVSALRSDGYIVKGVFLASEAKEALGLFNPDLVLLDINLPDENGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +   K   P+ +L+  + I DKV GL+ GADDYI+KPF+ +E++ R++  +RR  
Sbjct: 63  DLCRYIN-KKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMRRVN 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +  S     + +   + +NL+ + V      + L  KEY+++E     +N    +E  L
Sbjct: 122 KYKDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCREELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++   + E++ +DV + +LR KL N     + I+TV+G GYV+R
Sbjct: 182 DKVWEFDYDGEIRTVDVHVRRLRSKL-NDKHEASIIDTVFGVGYVMR 227


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  +I++ LK+E   V+    G D + L +  E   I++D+ +  + G + 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + ++Q L V G + +N + K+V V G  + LT  EY+++E L        + E    
Sbjct: 125 NNYKSNSQELKVGG-IILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++         + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 184 NVWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQE 230


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 17/234 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           +IL+++D+K ++  I+  L  E ++   T    DG E    YE    D IILDL L ++ 
Sbjct: 3   KILIVDDEKPISDIIKFNLAKEGYD---TITAFDGREALSKYEEENPDLIILDLMLPELD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR
Sbjct: 60  GLEVAKEVR-KNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118

Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +     ++          I+ GDL +  DA   + +G  + LT +E++++  L+      
Sbjct: 119 TENIESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQV 178

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 179 MTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148824970|ref|YP_001289724.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253800812|ref|YP_003033813.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233257|ref|ZP_04926583.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|289747605|ref|ZP_06506983.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|13883750|gb|AAK48236.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|124603050|gb|EAY61325.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|148723497|gb|ABR08122.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253322315|gb|ACT26918.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|289688133|gb|EFD55621.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|328460539|gb|AEB05962.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 4207]
          Length = 286

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 63  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 122

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 123 LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 182

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ ++
Sbjct: 183 TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRVW 242

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 243 SYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 283


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 138/234 (58%), Gaps = 5/234 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L++  + V  ++ G++G+E     + D +ILDL L D+ G E+
Sbjct: 5   VLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEI 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  + +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR++
Sbjct: 65  CKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I  GD+ ++     V  +G  + LT KE+++++LLS  K   LT++  L+ 
Sbjct: 125 QVEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++      E + +DV I  LRKK+ +      YIETV G GY LR+ ++D+  E
Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKLRDLSEDKGEE 238


>gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 253

 Score =  112 bits (281), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+ED++ LA  I + L + NF V+          L +    D ++LD  L D  G 
Sbjct: 21  VQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + LR      PV +L+      D V GL+SGADDY++KPF+  EL AR +A++RR  
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + LI    L ++LD++ V    + + LT KE+ ++  L+       ++   L+ +
Sbjct: 141 SAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  R +     ++  I +LR KL++  G +  ++TVWG GY
Sbjct: 201 WGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGY 241


>gi|281491759|ref|YP_003353739.1| nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis KF147]
 gi|281375473|gb|ADA64983.1| Nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis KF147]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   ++ +L+  N+ V         +++  F  FD I+LD+ +++I G E
Sbjct: 4   KILIVDDDQEILKLMKTVLEMRNYEVVTHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +ISTP+  +S   + ED + GL  G DDYI+KPF+ ++LVA++ A ++R   
Sbjct: 64  ICKRIR-REISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122

Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  ++ V        G ++  L+ + V V G  I LT +EY ++ELLS R +   T+E  
Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +YD       + I  +I ++R K   A    N I+TV G GY
Sbjct: 183 YDDVYDEYSNALFRSISEYIYQIRSKF--APYDINPIKTVRGLGY 225


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +   L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRKLAV 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|260599905|ref|YP_003212476.1| DNA-binding transcriptional regulator CpxR [Cronobacter turicensis
           z3032]
 gi|260219082|emb|CBA34437.1| Transcriptional regulatory protein cpxR [Cronobacter turicensis
           z3032]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALSLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|228911099|ref|ZP_04074906.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228923993|ref|ZP_04087270.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835792|gb|EEM81156.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848603|gb|EEM93450.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 219

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEVL 63
           +++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G+E+L
Sbjct: 1   MVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDGYELL 58

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +   
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L  ++
Sbjct: 119 TAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 GFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 217


>gi|229130510|ref|ZP_04259466.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|228652849|gb|EEL08731.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
          Length = 219

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEVL 63
           +++D+ ++ + I + L+ E + V     G + +E  ++ E  D +ILD+ L D  G+E+L
Sbjct: 1   MVDDESSIRNLIRMQLEMEGYEVLAAADGREALE--RWNEGPDVLILDVMLPDTDGYELL 58

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +   
Sbjct: 59  RLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVKKTE 118

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L  ++
Sbjct: 119 AAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 179 GFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 217


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 8   MKILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 68  MQVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 231


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 126/229 (55%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L++  + V V   GE+ ++     + D ++LD+ L  + G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ- 122

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             QS+         ++ G + +  +   V      + LT KE++++  L  R+   +T+E
Sbjct: 123 QVQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN +++     + +I+DV I  LR KL         I+TV G GY L
Sbjct: 183 HMLNSVWNYEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKL 231


>gi|222082735|ref|YP_002542100.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
 gi|221727414|gb|ACM30503.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   + + L ++ + V             +    D IILDLGL D PG 
Sbjct: 6   VKILVVDDEPPIRKLLRVGLSAQGYLVNEAPNAAAAKLSVEEDRPDLIILDLGLPDKPGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+  R   +  PV ILS  +     V+ L++GADDY++KPF   EL ARIR  +R   
Sbjct: 66  DLLQEWREDGLEIPVVILSSRTDEAGIVKALETGADDYVTKPFGVNELAARIRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  +
Sbjct: 126 QQQGEKAIFQTGGLSLDLVKRIVKVDGKEVKLSPKEYDILRVLAQHAGKVLTHQFLLKQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + V++ +LR+K+        YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRVYVRQLRQKIEQIPDQPQYITTETGVGYRLRE 228


>gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY------EFDAIILDLGLT 55
           RILL+EDDK++  ++   L SE F V      +DG+    F       + D IILDL L 
Sbjct: 13  RILLVEDDKSIRLTVSETLISEGFKVSSF---KDGLSALDFINNDIKKDVDLIILDLMLP 69

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+ R +R  +  TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA+
Sbjct: 70  GLNGLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRAL 129

Query: 116 VRRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RRS+       ++++++    + + L+   V      I L+ KE++++EL         
Sbjct: 130 IRRSKRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVW 189

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++ L  +++     + K +DV +  LR+KL        +++TV G GY
Sbjct: 190 SRDLILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGY 239


>gi|29375829|ref|NP_814983.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|229550253|ref|ZP_04438978.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257422851|ref|ZP_05599841.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293383171|ref|ZP_06629088.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294780111|ref|ZP_06745484.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859819|ref|ZP_07105907.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307273452|ref|ZP_07554697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277615|ref|ZP_07558707.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288440|ref|ZP_07568428.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312899351|ref|ZP_07758684.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|29343290|gb|AAO81053.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933724|gb|AAS49395.1| response regulator [Enterococcus faecalis]
 gi|229304691|gb|EEN70687.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257164675|gb|EEU94635.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291079510|gb|EFE16874.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294452786|gb|EFG21215.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295112803|emb|CBL31440.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850637|gb|EFK78386.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306500611|gb|EFM69940.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505880|gb|EFM75058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509979|gb|EFM79004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|311293502|gb|EFQ72058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027504|gb|EFT39436.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315156001|gb|EFU00018.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160348|gb|EFU04365.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315166770|gb|EFU10787.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315575685|gb|EFU87876.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|323480492|gb|ADX79931.1| two component system response regulator [Enterococcus faecalis 62]
 gi|327534882|gb|AEA93716.1| response regulator [Enterococcus faecalis OG1RF]
 gi|329577105|gb|EGG58578.1| transcriptional regulatory protein ResD [Enterococcus faecalis
           TX1467]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SR----GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +      H  S        ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 181 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 231


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +  D+   S+ +     EV  H   + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +I+DV I  LR KL +       I+TV G GY L
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKL 228


>gi|15610901|ref|NP_218282.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Rv]
 gi|31794935|ref|NP_857428.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis AF2122/97]
 gi|121639679|ref|YP_979903.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148663631|ref|YP_001285154.1| DNA-binding response regulator [Mycobacterium tuberculosis H37Ra]
 gi|167970926|ref|ZP_02553203.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215405820|ref|ZP_03418001.1| DNA-binding response regulator [Mycobacterium tuberculosis 02_1987]
 gi|215413693|ref|ZP_03422361.1| DNA-binding response regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425011|ref|ZP_03422930.1| DNA-binding response regulator [Mycobacterium tuberculosis T92]
 gi|215432744|ref|ZP_03430663.1| DNA-binding response regulator [Mycobacterium tuberculosis EAS054]
 gi|215448109|ref|ZP_03434861.1| DNA-binding response regulator [Mycobacterium tuberculosis T85]
 gi|218755548|ref|ZP_03534344.1| DNA-binding response regulator [Mycobacterium tuberculosis GM 1503]
 gi|219559850|ref|ZP_03538926.1| DNA-binding response regulator [Mycobacterium tuberculosis T17]
 gi|224992175|ref|YP_002646864.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|254552879|ref|ZP_05143326.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260184688|ref|ZP_05762162.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis CPHL_A]
 gi|260198813|ref|ZP_05766304.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis T46]
 gi|260202968|ref|ZP_05770459.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis K85]
 gi|289441201|ref|ZP_06430945.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T46]
 gi|289445364|ref|ZP_06435108.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CPHL_A]
 gi|289572012|ref|ZP_06452239.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T17]
 gi|289572415|ref|ZP_06452642.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis K85]
 gi|289748284|ref|ZP_06507662.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289755896|ref|ZP_06515274.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis EAS054]
 gi|289759927|ref|ZP_06519305.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis T85]
 gi|289763947|ref|ZP_06523325.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis GM 1503]
 gi|294995323|ref|ZP_06801014.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis 210]
 gi|297636446|ref|ZP_06954226.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN 4207]
 gi|297733440|ref|ZP_06962558.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN R506]
 gi|298527238|ref|ZP_07014647.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|313660771|ref|ZP_07817651.1| putative two component transcriptional regulatory protein
           [Mycobacterium tuberculosis KZN V2475]
 gi|2960189|emb|CAA18087.1| PROBABLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN
           [Mycobacterium tuberculosis H37Rv]
 gi|31620533|emb|CAD95977.1| PUTATIVE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN
           [Mycobacterium bovis AF2122/97]
 gi|121495327|emb|CAL73814.1| Putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148507783|gb|ABQ75592.1| DNA-binding response regulator [Mycobacterium tuberculosis H37Ra]
 gi|224775290|dbj|BAH28096.1| putative two component transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289414120|gb|EFD11360.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T46]
 gi|289418322|gb|EFD15523.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis CPHL_A]
 gi|289536846|gb|EFD41424.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis K85]
 gi|289545766|gb|EFD49414.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T17]
 gi|289688871|gb|EFD56300.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis T92]
 gi|289696483|gb|EFD63912.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis EAS054]
 gi|289711453|gb|EFD75469.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis GM 1503]
 gi|289715491|gb|EFD79503.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis T85]
 gi|298497032|gb|EFI32326.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 94_M4241A]
 gi|326905603|gb|EGE52536.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis W-148]
          Length = 234

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 11  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 71  LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 130

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ ++
Sbjct: 131 TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 191 SYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 231


>gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|319935211|ref|ZP_08009650.1| two-component system transcriptional regulator [Coprobacillus sp.
           29_1]
 gi|319809861|gb|EFW06249.1| two-component system transcriptional regulator [Coprobacillus sp.
           29_1]
          Length = 220

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +A  I + L    +       G+ G ++ + + +D I+LD+ L +I G+
Sbjct: 1   MQILIVEDERPIADLIMMNLTRAGYQCDYASNGKIGADMIENHFYDLILLDIMLPEISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  +     S PV  ++   SI+D+V+GL  GADDY+ KPF+ +EL+AR+ +++RR  
Sbjct: 61  ELMEYIEPQ--SIPVIFITAKGSIKDRVKGLHMGADDYLVKPFSIDELIARVESVLRRYH 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ V+   + V   G +I +T  EY+++  L   KN  L +++    ++ 
Sbjct: 119 KGIE-IIHVLNIEVDTKKRCVIQNGKKIDITNMEYELLLFLIRNKNMALYRDVLYQKVW- 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             D  + + +D+ I +LRKKL    G    I+TV+  GY+L     +E C
Sbjct: 177 KEDFDQTRTLDLHIQRLRKKL----GWHEEIKTVYKIGYML--EVPNEVC 220


>gi|312961644|ref|ZP_07776142.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311283903|gb|EFQ62486.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 242

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  L   +   L    F V     G  G+++ +   FD +++D+ L  + G  +
Sbjct: 11  ILTIEDDPVLGAYVHEHLGRCGFQVTWCRNGRQGLQMARDQAFDVVLMDILLPGLDGLSI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR +  S PV ++S + +  D+V G + GADDY+ KPF+  EL  RI AI+RR    
Sbjct: 71  LTHLRQSH-SIPVILMSALGAEADRVSGFRLGADDYLPKPFSMVELRVRIEAILRRVALD 129

Query: 123 AQSLIVTGDLSVNLDAKT---------VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + L          DA+T         V   GH   LT  EY+++E L       L+K  
Sbjct: 130 RRPLPARA--PARDDARTLRFDDEVCDVSFLGHSAGLTRSEYRLLETLHSSAEEVLSKAF 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              H+      P  + +D+ I ++R+KL      +  + TVWG+GY L  +A
Sbjct: 188 LYQHVLQRGYAPHDRSLDMHISQIRRKLKVIGYSEREVRTVWGKGYALSGHA 239


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDIP 58
           RIL+++D++ +   + + L+ E    YV D  EDG   ++     ++  I+LD+ L  + 
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEG---YVIDEAEDGEIALQKATASDYSIILLDVMLPGMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RR
Sbjct: 64  GIEVCTRLRQTK-ATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRR 122

Query: 119 SRGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           S   A         + IV  +L +  DA  V   G  I LT KEY+++  L++  +   +
Sbjct: 123 SSETAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
           +E  L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L
Sbjct: 183 REELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKL 234


>gi|302537410|ref|ZP_07289752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446305|gb|EFL18121.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 217

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERVGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL AR+RA+ RR+ 
Sbjct: 61  DVCRKIIELGMPTRVLMLTASGDVSDRVEGLELGADDYLPKPFAFTELTARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V  +G  + L  KE+ ++E+L   + T ++ E  L   +D
Sbjct: 121 VALPPVLERAGIKLDPNRREVFREGREVQLAPKEFAVLEVLMRSEGTVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 216

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 120/218 (55%), Gaps = 9/218 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRG 121
            +R  +   P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR      
Sbjct: 61  IMR-GQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +V++ID  I  LRKKL        YI+TV G GY
Sbjct: 180 EHFGDVRVIDTHIKNLRKKLEIP-----YIKTVKGIGY 212


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  IE     E+  I+LD+ + +  G EV
Sbjct: 9   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS+  
Sbjct: 69  CAEIR-ERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +        L+V   L ++ DA  V  +G  ++LT KEY+++  L+   +    +E  
Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 188 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGY 233


>gi|18311081|ref|NP_563015.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|5103040|dbj|BAA78773.1| Response regulator protein VirI [Clostridium perfringens]
 gi|18145764|dbj|BAB81805.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCRELN--KLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    I L  KE +++       N +L+++ 
Sbjct: 122 FLKESNKIKVKDEFIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNISLSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL+N    +  IET++G GY+ +
Sbjct: 182 ILDGVWGEEYFGDFRTVDVHVRRLRQKLNN----EEIIETIFGLGYMFK 226


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDI 57
           +RILL+EDD  + +++   L    + V   D   DG E   KFYE  +  +ILD+ L  +
Sbjct: 3   IRILLVEDDDHICNTVRGFLAEAGYQV---DACTDGNEAYTKFYENTYQLVILDIMLPGM 59

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+LR  R AK  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++R
Sbjct: 60  NGHELLREFR-AKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLR 118

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS   A+ + V G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ 
Sbjct: 119 RSGALAKEIRV-GRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSR 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E +   +   I  LR KL      +N I+T+ G GY L E+
Sbjct: 178 IWGYDFEGDGSTVHTHIKNLRAKLP-----ENIIKTIRGVGYRLEES 219


>gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GE+G+ L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +    V G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|256423914|ref|YP_003124567.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256038822|gb|ACU62366.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 224

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  L   ++  L  E F V   D  ++G++   FY++D ++LD+ L    G 
Sbjct: 1   MNILLIEDETDLQEVVKESLAKEGFLVETADTFQEGLKKISFYDYDCVLLDIMLPGGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+    S  V I+S   S++DK+RGL  GADDY++KPF+  EL AR+++++RR  
Sbjct: 61  QILEHLKHIGKSENVIIISAKDSVDDKIRGLNLGADDYLTKPFHIAELNARVKSVLRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++   ++ V+L+     V    + L  KE+ ++  L   +N  ++K      ++ 
Sbjct: 121 FEGKNILECANIKVDLNEFMAAVNDVPVALNRKEFDILVYLMANRNRLISKSSLAEKVWG 180

Query: 181 GR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               D  + + +   I  LRKKL + +G +  I  ++G GY L
Sbjct: 181 DYMDDADDFEFLYSQIKNLRKKLKD-SGAEVKISAMYGMGYKL 222


>gi|152983691|ref|YP_001348856.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958849|gb|ABR80874.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 235

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++ + ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFGAFLDFKPELVVLDLMLPGQNGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR   
Sbjct: 68  VCREIRRVD-NLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALIRRHAP 126

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
              S   +  G L+V+   +  E+ G  I LT  E++++ LL+ +    L+++  LN + 
Sbjct: 127 LPASPETLAFGQLNVDRRRREAELDGRSIELTTMEFELLWLLASQAGEILSRDEILNQIR 186

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +DG +    + +DV I KLR KL +       I+TVWG+GY+ 
Sbjct: 187 GIGFDGLN----RSVDVCISKLRSKLKDNPREPVRIKTVWGKGYLF 228


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++AL   +   L++E + V V D G++     K    D +ILD  L  + G E
Sbjct: 4   RIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLSGVE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  + +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR+RA++RRS
Sbjct: 64  LCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S +V GD+ ++ +   V   G  + L   E++++E          ++E  L+ +
Sbjct: 124 KPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDGV 183

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + GRD   + + +DV + +LRK + N    ++ I TV G GY L E 
Sbjct: 184 W-GRDIYVDERTVDVHVGRLRKAI-NRGRERDPIRTVRGAGYALDEQ 228


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F V     G+  +   +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + + +R  K S  P+ +L+      DKV GL+ GADDYI KPF+ +ELVAR++A++RR  
Sbjct: 66  LCKEVR--KFSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYE 123

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++   V+  DL V+L    V  +G  I LT KE +++  L    N   T++  L +++
Sbjct: 124 GESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+      K  + TVWG GY    N
Sbjct: 184 GYDYMGDSRTVDVHIKRLREKVGEGPNWK--LTTVWGVGYKFEVN 226


>gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  LK + ++V V   G  G+E    ++ D I+LD+ L  + G E
Sbjct: 5   RVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGRWQPDLILLDVMLPVMNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL A+R +   TPV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RR+R 
Sbjct: 65  VLAAIRRSG-DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRARQ 123

Query: 122 H--AQSLIVTGDLSVNLDAKTVEV---QG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              A   +    L V+ D+ T  V   QG HR+ LT  E+ ++  L        ++   L
Sbjct: 124 AKVADDKLCWAGLEVDPDSLTAVVNNAQGTHRLDLTPTEFSILVTLMRAPTRPFSRLFLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     D  E +++D  +  LR+KL  AAG    +  V   GY  R+
Sbjct: 184 ENCLPASDALE-RVVDTHVYNLRRKL-EAAGMTEILPAVRSVGYRFRQ 229


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F+V     G D ++L + +E D +ILD+ +   PG + 
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVMM---PGLDG 60

Query: 63  LRA-LRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +R  L+V + S+ P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR  
Sbjct: 61  IRTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++  A  +   G L++N D K V V+G  I LT  EY ++ LL        + + 
Sbjct: 121 QLGNMNQQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++         + V I  +R+K+        Y++ VWG GY
Sbjct: 181 IYEQIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGY 226


>gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 23  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 83  ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRS- 141

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A    + +V GDL +N D + V   G +I+LT  ++ ++  L       ++K   L++
Sbjct: 142 GVASIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDN 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  I++++I  LRKK+    G +  I TV G GYVLR
Sbjct: 202 VWNYDFGGQANIVELYISYLRKKID--VGREPMIHTVRGAGYVLR 244


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +E+ L++E F V     G + + + K ++   +ILD+ +  + GF
Sbjct: 10  IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R L+ +  ++T   +L+    +ED+V+GL  GADDY+ KPF+ EEL+ARI A +R  
Sbjct: 70  EVCRMLKKIQNVAT--IMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNH 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  S +  G   ++   K +   G  + L+  EY +++ L       L+K M L++++
Sbjct: 128 YPHLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E  I++V+I  LR KL++       I T+ G GY
Sbjct: 188 GYDFGGEENIVEVYIRSLRDKLNDRQ--HRIIRTLRGAGY 225


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +       G D + + K  + D ++LDL L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDGYD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +T + +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++S ++ G++ ++ +  ++  +G +I LT KE++++E+L   K   +T++  L+
Sbjct: 125 TTINIESKSYVL-GNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      E + +DV I  LRKK+ +      YIET+ G GY
Sbjct: 184 TIWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGY 226


>gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDY-SQPLLKTIRGAGYMIKDEG 248


>gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++DD AL   +   L   N++  +     D     + Y  D I+LD  + D  G 
Sbjct: 6   LKVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGA 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      PV +L+      D+V GL++GADDY+ KPF+  EL+ARI A++RR +
Sbjct: 66  EACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRKK 125

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    +    +  G  + +   + +      I LTG E  ++E L       L++E  L 
Sbjct: 126 GASALNKDQPVSFGPFTFDPATRQLSKDDETIKLTGGEVNLLEALINNSGKPLSRERLLA 185

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              D  DE E   + ID+ I +LR+ + +      +I+TVWG GY
Sbjct: 186 LARDD-DEGERNDRAIDIAILRLRRAIEDDPKQPRWIQTVWGVGY 229


>gi|254559730|ref|YP_003066825.1| DNA-binding response regulator in two-component regulatory system
           with ArcB or CpxA [Methylobacterium extorquens DM4]
 gi|254267008|emb|CAX22812.1| putative DNA-binding response regulator in two-component regulatory
           system with ArcB or CpxA (putative arcA=cpxC, dye, fexA,
           msp) [Methylobacterium extorquens DM4]
          Length = 244

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +   +  +L+   + V     G D   L      D ++LD+ L  + GF++
Sbjct: 12  VLLVEDDDGIRALVTRILRESGYRVTGCRSGADMWSLQPDLAVDLVLLDVMLPGVSGFDL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LRALR AK + PV +LS  +   D+V GL+ GADDY++KPF + EL+ARIRA++RR+   
Sbjct: 72  LRALR-AKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRASIA 130

Query: 121 -----GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +      ++L ++  V+ +G  + L+G E+ ++ +        L +E  
Sbjct: 131 PLPAAAARPEALAFAGWRLDLRSRALVDPEGAAVDLSGAEHDLLLVFLEHPGRVLGREQI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L         P  + +D  + +LR+KL    G    I+TV G GY+L
Sbjct: 191 LEMCRGRLAAPSDRSVDTLVSRLRRKLEPPDGAAPVIKTVRGSGYML 237


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A      L+ + F V +   G +G++  K   +D +ILD+ L  + G+ 
Sbjct: 3   KILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLPKLHGYN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+++++  K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR+ A ++    
Sbjct: 63  VMKSIQDEK-DFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKNYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S+     +I+ G L V   ++ V + G  ++LT KE+ ++  L    N    +E
Sbjct: 122 LKNKFGSKPQDNDIIIRG-LQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRVFGRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   I V I ++R K+ +      YIETVWG GY  R
Sbjct: 181 ELFERIWGLEALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRFR 230


>gi|268680008|ref|YP_003304439.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268618039|gb|ACZ12404.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  LA  +   L+    ++ V D    G+       FD +ILDL L  I G E
Sbjct: 3   KILMIEDDLELAEILMEYLEQFEMSITVADDPYMGLSTLDTQAFDLVILDLTLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  + + P+ I S  + I DKV  L++GADDY+ KP+N  EL ARI +++RR +G
Sbjct: 63  VCKEIR-KRHTLPIIISSARTDITDKVTALENGADDYLPKPYNPRELQARIMSLLRRQKG 121

Query: 122 HAQSLIVTGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               L+ T  L     A         ++ QG  +HLT  EY ++  L  ++   +++E  
Sbjct: 122 ----LLTTEQLPQKQKAFHLIEEQMRIDFQGKELHLTAAEYGILAYLIKKEGGVVSREEL 177

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++    +E   K IDV I ++R+KL        YI  V G GY
Sbjct: 178 IYNIEVISEETTNKSIDVIIGRIRQKLGENPKEPLYIHAVRGIGY 222


>gi|255657277|ref|ZP_05402686.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451868|ref|ZP_06893586.1| response regulator [Clostridium difficile NAP08]
 gi|296879736|ref|ZP_06903711.1| response regulator [Clostridium difficile NAP07]
 gi|296259285|gb|EFH06162.1| response regulator [Clostridium difficile NAP08]
 gi|296429325|gb|EFH15197.1| response regulator [Clostridium difficile NAP07]
          Length = 219

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   IE +LK +   V V    E+ +++ +F  F+ IILD+ +  + GFE
Sbjct: 3   KILVIDDELDVLKLIENVLKRDGHEVKVISDIENAMDI-EFNSFNLIILDVMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R  K+  P+  L+  +   D + GL  GADDYI+KPF   EL ARI A +RR   
Sbjct: 62  VCKAIR-NKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRESR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++L+   ++  N   K V + G +I+ T  EY + E L+  K    +KE     +Y  
Sbjct: 121 EKKNLLTISNVQFNFLGKEVLIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYGF 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGY 219
             E ++  I   +  +R KL      K Y    IETVWG GY
Sbjct: 181 DGESDISTITEHVKNIRSKL------KQYDIYTIETVWGIGY 216


>gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M +LL+EDD+++A  I   + +  + +V+ T+ G+   +  +   FD  ++D  L    G
Sbjct: 5   MNVLLVEDDQSVAKFICSELERVGHRSVHCTE-GDLAYDTARDQAFDVWVVDRMLPGRDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++++ LR     TP  +LS +  ++D+V+GL+SGADDY+ KPF  +EL+AR++A+ RR 
Sbjct: 64  LQLIQDLREIGNETPALVLSALGEVDDRVKGLRSGADDYLVKPFAMDELLARLQALSRRG 123

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    + +   DL ++L  + V  +G  + L  +EY+++E L       +T+ M L H
Sbjct: 124 VNNQDGTTRLQVQDLVMDLLKQNVSRRGLAVLLQPREYKLLEYLMRHAGQVVTRTMLLEH 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    +P+  +IDV + +LR+K+       + + TV G GY L   A+
Sbjct: 184 VWGYNFDPQTNVIDVHVSRLRQKIDKDF-DTSLLLTVRGAGYRLGPEAQ 231


>gi|254426426|ref|ZP_05040142.1| Transcriptional regulatory C terminal domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187840|gb|EDX82806.1| Transcriptional regulatory C terminal domain protein [Synechococcus
           sp. PCC 7335]
          Length = 179

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 103/183 (56%), Gaps = 9/183 (4%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL    G  VL+ LR    S  V +L+    ++D V  L+SGADDY++KPF  EE
Sbjct: 1   MLLDLGLPGKDGLAVLQELRGQGDSLSVIVLTARDGVDDTVTVLESGADDYVTKPFRFEE 60

Query: 108 LVARIRAIVRRSRG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           L+ARI+  +R   G     +++++  GDLS+NL  +   + G  + L+ +E+ + E+L  
Sbjct: 61  LLARIKVQMRGLHGQQKLQSETVLRVGDLSLNLITRQAIISGRTVELSAREFVLAEVLLR 120

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++KE  LN ++    +P   +I+V+I  LR+K  N      YIET+ G GY LR 
Sbjct: 121 HPMHVMSKEQLLNRVWGYDYDPGSNVIEVYIRHLRQKFGNG-----YIETIRGMGYRLRG 175

Query: 224 NAK 226
             K
Sbjct: 176 QKK 178


>gi|220920806|ref|YP_002496107.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219945412|gb|ACL55804.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 111/224 (49%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+I+D+  +   + + L S+ + V     G    +       D +ILDLGL DI G 
Sbjct: 5   LRILVIDDEPPIRKLLRMGLSSQGYEVAEAGTGRAARQALAQAAVDLVILDLGLPDIGGH 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR +R    S PV +LS       KV  L  GADDY++KPF   EL+AR+R  +R   
Sbjct: 65  DLLRLIREGFPSLPVIVLSSRGDETGKVEALDLGADDYVTKPFGMNELLARMRTALRHQL 124

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +    DL+V+L  + V V    + L+ KEY M+ LL       LT    L  +
Sbjct: 125 AQQGERPVFRVEDLTVDLVRRLVRVGDREVKLSPKEYDMLRLLVQHAGKVLTHAFLLREI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+   + V++ +LR+K+        YI T  G GY LR
Sbjct: 185 WGAVADPQ--YLRVYVRQLRQKIEPDPERPRYILTETGVGYRLR 226


>gi|146338490|ref|YP_001203538.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146191296|emb|CAL75301.1| putative two-component response regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 221

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   +  ++    +   + V     G    EL +   +D I+LD+ L ++ GF
Sbjct: 1   MRILLVEDTPEIGAAVTSRFERIGYAVDWEKDGRTASELIEVQTYDLIVLDVMLPNMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   + TPV +L+  S+++D++  L  GADDY+ KPF+  EL AR RA++RR+ 
Sbjct: 61  AVLKHLRKRGLRTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  G L ++   +T  V G  + LT +E  ++E+L+ R    + KE  +  L+ 
Sbjct: 121 GQSDNLLTLGPLVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    ++ FI +LR+KL   A     I+T  G GY L
Sbjct: 181 FDQDPSPNAVEQFIARLRRKL---AATSVEIKTERGLGYQL 218


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 1   MLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR A+ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 61  CKQLR-ARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 120 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 180 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 223


>gi|295093857|emb|CBK82948.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 201

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/199 (38%), Positives = 114/199 (57%), Gaps = 4/199 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDDK +   I+  L+  N+ V+ T  G + IE  K    D IILDL L  I G E+
Sbjct: 4   VLIIEDDKEICVMIKDHLEKYNYQVFFTLTGANAIERIKELSPDLIILDLMLPFISGDEL 63

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +R +R  K S  PV ++S  S   +KV  L+ GADDY++KPF+ +EL+ARI   + RS+ 
Sbjct: 64  IRNIR--KFSDVPVIVVSAKSLTFNKVELLRLGADDYLTKPFDLDELLARIERNLLRSQK 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +L +T G+LS+N  +K V V    I LT KEYQ++ELL+   +   +K+     ++ 
Sbjct: 122 DTPNLCLTFGELSINTSSKIVTVADEIIVLTAKEYQLVELLAKYPDKVFSKQNLYESIWQ 181

Query: 181 GRDEPEVKIIDVFICKLRK 199
                +  +I+  I  LRK
Sbjct: 182 EPFARDNDVINTHISNLRK 200


>gi|270261000|ref|ZP_06189273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044484|gb|EFA17575.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD +    ++  L    ++V +   G DG+     + +DAI+LD+ L  + G+
Sbjct: 1   MRILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   P+  L+    ++D++ GL+ GA+DY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QIVEVLR-KKSDVPILFLTARDGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+      K  I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKIDRPFAIK-LIHTVRGIGYV 218


>gi|270262958|ref|ZP_06191229.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043642|gb|EFA16735.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G+ G+E     E+ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGEYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRDVR-KKSRMPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + +     I  G+L++N   ++ E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 ERPEEVDDEIAISFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KL         IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLGALTDNMLSIETVRSIGYRIR 226


>gi|164686841|ref|ZP_02210869.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM
           16795]
 gi|164604231|gb|EDQ97696.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 9/220 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I   L    ++V V + G++GI+L K  EFD ++LD+ L  I GF 
Sbjct: 10  KILIVEDEIDIREGISEYLSEVGYDVMVAEDGQEGIDLFKSNEFDLVLLDIMLPKINGFG 69

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL  +R  +IS  PV +L+ M+    ++      ADDYI+KPF+   L  RI A+ RR +
Sbjct: 70  VLSQIR--EISDVPVMMLTAMTDDYSQIMSFNEKADDYITKPFSVVVLHKRIEALQRRIQ 127

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  Q +  +  D+ V+      +   + + L  KE +++ELL   KN  LT+   L+ L+
Sbjct: 128 GRQQNNKWIYKDVEVDFLGFCAKKDNNPVDLKPKEIKLLELLIKHKNQVLTRNQMLDSLW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  + P  ++IDV+I  LRKKL       + I TV G GY
Sbjct: 188 EIDEAPADRVIDVYIKNLRKKLD-----LDCITTVKGIGY 222


>gi|83646830|ref|YP_435265.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634873|gb|ABC30840.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD  LA ++   L  EN +      G  GI L +   +D ++LD+ +  + G 
Sbjct: 5   LRVLLVEDDIDLATTVLDYLALENMSCDHAANGVAGINLARANAYDVMLLDINMPRMNGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   + TPV +L+   +++DKV G ++G DDY+ KPF   EL+ R++A+ RR  
Sbjct: 65  AMCRKLREEGVDTPVLMLTARDTLDDKVEGFRAGTDDYLVKPFAFAELIVRLQALSRRRS 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ L+  G L ++LD + V  +G  + LT   +Q++E L +R +  +  +  L  +  
Sbjct: 125 GQAR-LLTVGPLQMDLDQRQVRREGKPLMLTPTGWQLLEKL-MRHSPGVVSKSDLEQVLW 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               P+     V + KLR  +         I TV G+G    E  + E
Sbjct: 183 PDSPPDSNAFKVHLYKLRMAVDKPFASA-LIHTVPGQGVRCGEAERSE 229


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 21  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR+RA++RR    
Sbjct: 81  TKRIE-AQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 139

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 140 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 200 LEEVWDWVDASSTRTVDSHVKALRHKL-----GASTIRTVHGVGYAF 241


>gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 246

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 125/235 (53%), Gaps = 10/235 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +RILL++D+  L   +++ L+ E ++V V   G  G+   +     D I+LD  L D  G
Sbjct: 9   IRILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNLPDFSG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V  L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 69  IDICQRIRTSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G     +  G+LS+N   + V      I L+ KEY+++  L   +   L +
Sbjct: 129 ITFAAVNGDGPQPETLSVGNLSMNTITRDVYRGERMIQLSVKEYELLNFLMRGQGKVLER 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +  ++      +  ++DV+I  LR+K+  +      I TV G G++LRE A 
Sbjct: 189 AAIMRGVWGENFYGDDNLLDVYIRYLRQKV-ESKDLPTLIHTVRGVGFILREEAS 242


>gi|33603516|ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33577640|emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 223

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L    ++V +   G DG+   +   +D ++LD+ L    G+
Sbjct: 1   MAILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  +R      PV  L+    + D++RGL+ GADDY+ KPF+  ELV RI+ ++RR  
Sbjct: 61  QVIEEVR-QDSDVPVIFLTARDHVADRIRGLRLGADDYLVKPFSFAELVLRIQTMLRRGA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DL ++   + V   G  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 ARAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLLIRRQGEALSRTIIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV I +LR K+ +A      I+TV G GY L E 
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DAPFPLKLIQTVRGIGYALAEQ 222


>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGLPDMDGQQV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           LR  R    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R++  G
Sbjct: 70  LREFREWS-TVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAPAG 128

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            AQ   ++ G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 129 EAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHAGRVITQQQLLKDIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 189 PTHTEDSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 25/238 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+   F V     G +G+E  +    D  +LD+ +  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMVPGLDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR  GH
Sbjct: 66  CRRIR-DESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRF-GH 123

Query: 123 AQ------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           A                    ++V GD+ ++ +   V  QG  + LT  E +++   S  
Sbjct: 124 ATGTGPGAPAATGGPQDGAGGVLVFGDVEIDTEGMEVRRQGAHVGLTPTEMRLLLEFSTA 183

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 184 PGTVLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKI-----GQDRIETVRGFGYKLR 236


>gi|255973028|ref|ZP_05423614.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976067|ref|ZP_05426653.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618840|ref|ZP_05475686.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256958749|ref|ZP_05562920.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962146|ref|ZP_05566317.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965344|ref|ZP_05569515.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257078778|ref|ZP_05573139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082778|ref|ZP_05577139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085479|ref|ZP_05579840.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086608|ref|ZP_05580969.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089665|ref|ZP_05584026.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415879|ref|ZP_05592873.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419081|ref|ZP_05596075.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|255964046|gb|EET96522.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255968939|gb|EET99561.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598367|gb|EEU17543.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256949245|gb|EEU65877.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952642|gb|EEU69274.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955840|gb|EEU72472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256986808|gb|EEU74110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990808|gb|EEU78110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993509|gb|EEU80811.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994638|gb|EEU81940.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998477|gb|EEU84997.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157707|gb|EEU87667.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160909|gb|EEU90869.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 242

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 64  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 123

Query: 119 SR----GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +      H  S        ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 124 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 184 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 234


>gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   ++  + SEN        G  G+   K  E+  ++LD+ +  I GFE
Sbjct: 4   KILIIDDDKELCLLLQKSVSSENIEADCCHFGTAGLSALKNSEYQLVVLDVMMPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  K S P+ +L+  +    KVRGL++GADDY++KPFN +E +AR+ +++RR   
Sbjct: 64  TLERIR-KKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G   S +    L ++LD++T+ +    + L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNPNGVQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   I   I ++RKK+        +I+TV G GY
Sbjct: 183 EVWGEPYAYDDSNIMALISRIRKKIEKTPSKPTFIQTVKGIGY 225


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +LK E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            R LR  ++ST PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 64  CRRLR--QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGD 121

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S G  A  ++  G +S++++   V V G ++ +  KE+ ++E L       LT+   ++ 
Sbjct: 122 SDGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR K+         + TV G GY
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGY 223


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  L  ++   L SE ++V     G++ ++L +    D I+LDL L D+ G E+
Sbjct: 5   VLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMSGLEI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR +K +  TP+ +++      D++ G + GADDYI KPF+  E + R+ A+++RS 
Sbjct: 65  CRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAMLKRSG 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + +  I+ G L +++ A  V+++   + LT KE+ ++  L  R     T++  L+ 
Sbjct: 125 DKINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDALLDD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E   + +D  + +LR KLS+     N IETV G GY
Sbjct: 185 VWGYNCEVTTRTVDTHVKRLRAKLSDVG---NNIETVRGVGY 223


>gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 126/224 (56%), Gaps = 13/224 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  ++  I++ LK   ++V     G + ++  K  E D +ILD+ L  + G+ 
Sbjct: 3   KILIIEDEYPISQVIKVYLKKAGYDVEQVFDGSNAMDTFKHVEPDLVILDVMLPGVDGWT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L+ +R       V +L+ +  +  ++ GL  GADDYI+KPF+ EELVAR++A++RR  +
Sbjct: 63  LLQDIRS---KCAVIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVLRRIGN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL- 178
           + +  ++I  G L +++ A  V + G  I LT ++  ++   +   N T T+E  L+ + 
Sbjct: 120 KNNNSNVIKFGTLEIDVVAHRVRLLGTIIELTPRDLSLLLFFADNPNRTFTREQLLDSIW 179

Query: 179 ---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              YDG D    + +D+ I +LRK L +    +  I+T  G GY
Sbjct: 180 GWDYDGSD----RAVDLSIKRLRKSLKDWPKSEGEIKTFRGLGY 219


>gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1]
 gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
 gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ ++G
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|311281631|ref|YP_003943862.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308750826|gb|ADO50578.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALALLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 121 GHAQSLIVTGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q    TG  ++ +DA       +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNTETGSPTLEVDALSLNPGRQEASFDGTTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
 gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++A   +  L+   F V     GE G++      +D +ILDL L    GF 
Sbjct: 6   KILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDGFS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R +K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 66  ITQEVR-SKKDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G  +  T +E+ ++  L+   N   TKE   
Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I KLR+K+    A    YIET+WG GY  +
Sbjct: 185 QEIWKMESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRFK 232


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|104779513|ref|YP_606011.1| osmolarity response regulator [Pseudomonas entomophila L48]
 gi|95108500|emb|CAK13194.1| two-component response regulator OpmR [Pseudomonas entomophila L48]
          Length = 246

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  ++    S+ F V      E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLDRFFTSKGFRVRTVPNVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR +    P+ +L+       +++GL+ GADDY++KPFN +ELVAR++A++RR   
Sbjct: 72  ACKRLRASNNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELVARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G  +  +  GD  ++L  + ++ +G   H LT  E+ +++ L +     LT++ 
Sbjct: 132 SVPGAPGSEEETVTFGDYELSLATRELK-RGEETHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 20/233 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V+    GE+ +E       D I+LD+ L  + GF V
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 66  CRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR---M 121

Query: 123 AQSLIVT--------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
             S+ VT              G+L V+ + + V   G RI LT  E+ ++ELL       
Sbjct: 122 GPSITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKV 181

Query: 169 LTKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 182 VPRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDD  +   I+L +    ++      GE+G+EL      D IILD+ L  + G+
Sbjct: 5   IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + +R+     P+ +L+G     D ++GL  GADDYI KPF+  EL+AR++ ++RR+ 
Sbjct: 65  EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +   ++ +++    V +    + +  KE ++   L++     LT++  L+ +
Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + +DV I ++R KL+     K  I T+ G GY   EN+
Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHK-AKWSIVTIRGVGYRFEENS 230


>gi|169824288|ref|YP_001691899.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831093|dbj|BAG08009.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 238

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           I  +EDDK++   I   L +E ++      G+ G      Y    D IILD+ L    G 
Sbjct: 18  ICCVEDDKSIRELIIYALNNEGYDA--MGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGL 75

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+L+ +R  + +   PV +L+  ++  DK+ GL SGADDY+ KPF+  EL+AR+RA++RR
Sbjct: 76  EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 135

Query: 119 SR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S     +S I+  ++ ++ D +TV V G  + LT KE++++  L       LT+E  +  
Sbjct: 136 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E E + +DV I  LR+KL NA+   + I+T+   GY
Sbjct: 196 IWGFDFEGESRTVDVHIATLRQKLKNAS---SIIKTIRNLGY 234


>gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 234

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPG 59
           +R+L++ED+  +   I L L+     V   +  E  + L  +    DA ILD+ L  + G
Sbjct: 2   VRVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMNG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           F +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ RR 
Sbjct: 62  FSLCETIRRTDQQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRV 121

Query: 119 -------SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                  S G+     + +G+  ++ + + +   G  I LT  E+Q++EL      T L 
Sbjct: 122 IRTKEEDSNGNTPLGTLTSGEFVLDENRRVLLKAGQPIELTQVEFQIMELFFRNPGTALV 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +E  L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 182 REKILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPTHIMTVWGYGYRWEE 234


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +   ++ E F V     G++ ++  + Y    I+LD+ +    G EV
Sbjct: 5   ILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+ K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+A+ RR   H
Sbjct: 65  CKLIRL-KSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITAH 123

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S+I    L +++D  +V++ G  ++LT KE +++ +LS   N  ++++  L+ ++
Sbjct: 124 KNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +D  I ++R KL  +      I+T+WG GY
Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGY 223


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQVQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 222

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 10/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           I  +EDDK++   I   L +E ++      G+ G      Y    D IILD+ L    G 
Sbjct: 2   ICCVEDDKSIRELIIYALNNEGYDA--MGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGL 59

Query: 61  EVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+L+ +R  + +   PV +L+  ++  DK+ GL SGADDY+ KPF+  EL+AR+RA++RR
Sbjct: 60  EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 119

Query: 119 SR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S     +S I+  ++ ++ D +TV V G  + LT KE++++  L       LT+E  +  
Sbjct: 120 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E E + +DV I  LR+KL NA+   + I+T+   GY
Sbjct: 180 IWGFDFEGESRTVDVHIATLRQKLKNAS---SIIKTIRNLGY 218


>gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  L   ++  ++ ENF+V V   G  G ++     FD ++LD+ +  + G E 
Sbjct: 4   VLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQPFDIVVLDVMMPRLNGIET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+A+R    + PV +L+      D++ GL+ GADDY+ KP +  ELVARIRAI+RR +  
Sbjct: 64  LKAIR-QHSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRRVQPL 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +A + I  G L +    + VE     + LT  EY ++E+L+      ++K+  L+  
Sbjct: 123 ETINANTQITVGALCIWPAQRLVEWDSQPVILTSTEYSLLEILAKNAGQIVSKQ-DLSQQ 181

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             GR      + IDV +  +R KL     G++ I+TV+  GY L
Sbjct: 182 ALGRPLARFDRSIDVHLSSIRHKLGLLPDGRHCIQTVFRSGYQL 225


>gi|256762258|ref|ZP_05502838.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256683509|gb|EEU23204.1| DNA-binding response regulator [Enterococcus faecalis T3]
          Length = 242

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASPEKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 64  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 123

Query: 119 SR----GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +      H  S        ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 124 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 184 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 234


>gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
 gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 2/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED++ LA  +   L  E + V     G+  ++L +   +D +ILD+ +    G 
Sbjct: 1   MRILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLAQQTVYDLMILDIMMPVKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R +  +  V +L+ M+ ++D+V GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 61  EALKEIRASGHTNHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G+  + L+   V    + I L GKE +++ LL       L++    +H++ 
Sbjct: 121 HYEAPQLALGNTQLKLEEMEVSA-NNAIRLAGKEAKLLALLMKNPGKALSQTYIYDHVWA 179

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
               P + ++++V++  L +KL +       +    G   +L E A  E  + LE
Sbjct: 180 DEAGPADYELVNVYLAYLVQKLLSIRSNLQIVGQPSGPYQLLVEAAPTEPSQSLE 234


>gi|254518844|ref|ZP_05130900.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912593|gb|EEH97794.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +I+L++D++ L   ++ +   E F  +Y  D G D I   K    D IILD+ L DI G+
Sbjct: 10  KIMLVDDERELLSLLKEVFIKEGFKEIYAVDNGIDAILQVKEKNPDMIILDVNLPDIDGY 69

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V    R+ K ST P+  L+ M   E+K++GL++G DDY++KPFN +E+V R+++ +RR 
Sbjct: 70  KVCD--RIRKFSTCPIIFLTAMGEDEEKIKGLEAGGDDYVTKPFNIKEVVLRVKSQLRRG 127

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----E 172
              ++   +L   G++S+N +   V+     I LT KEY +I  L    N   +K    E
Sbjct: 128 SIVSEVKTNLYTFGNISINEETGEVKKGKENILLTAKEYSLILFLVKNINKVFSKSSLCE 187

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + YDG D      I V I  LR+KL +      +I+T+ G GY L
Sbjct: 188 AIWGYEYDGYDNT----IMVHIRHLREKLEDNPSDPKHIKTLKGIGYKL 232


>gi|254384478|ref|ZP_04999819.1| transcriptional regulatory protein cutR [Streptomyces sp. Mg1]
 gi|194343364|gb|EDX24330.1| transcriptional regulatory protein cutR [Streptomyces sp. Mg1]
          Length = 217

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERVGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL AR+RA+ RR+ 
Sbjct: 61  DVCRRIVELGMPTRVLMLTASGDVSDRVEGLELGADDYLPKPFAFTELTARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V  +G  + L  KE+ ++E+L   + T ++ E  L   +D
Sbjct: 121 VALPPVLERAGIKLDPNRREVFREGKEVQLAPKEFAVLEVLMRSEGTVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 128/222 (57%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+      I+  LKS  + V     GE+ +   +    + IILDL + ++ G E
Sbjct: 14  KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73

Query: 62  VLRALRV-AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           V + LR  A++S  P+ +L+  ++  D+V GL+ GADDY++KPF+  ELV R++ ++R  
Sbjct: 74  VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRSG 133

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++ G     I+  +LS+N+      V+G  + LT  E++++ +L+ R+    ++E  L  
Sbjct: 134 QTTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  +  + + +D  + +LR+KL  AA    Y++TV G GY
Sbjct: 194 VWEYDNLIDTRTVDTHMRRLREKLGAAA---RYLDTVRGVGY 232


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 20/233 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V+    GE+ +E       D I+LD+ L  + GF V
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 66  CRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR---M 121

Query: 123 AQSLIVT--------------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
             S+ VT              G+L V+ + + V   G RI LT  E+ ++ELL       
Sbjct: 122 GPSITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKV 181

Query: 169 LTKEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 182 VPRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 65/204 (31%), Positives = 117/204 (57%), Gaps = 4/204 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G + ++  +   +DA+ILDL L ++ G E
Sbjct: 3   QILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 63  ICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 122

Query: 121 -GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G AQS   I    L+++  A++V + G  + LT +E++++   +       ++   L  
Sbjct: 123 MGQAQSAGNIQAHGLTIDPLARSVLLHGQIVDLTPREFELLYFFARHPGEVFSRLALLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKL 201
           ++  + E     ++  I +LR K+
Sbjct: 183 VWGYQHEGYEHTVNTHINRLRIKI 206


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E + V +   G +  +L    + D I+LDL L    G +
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK+ TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-AKLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQK 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I   +L ++ D  TV   G  + LT +E++++  L       +T+E
Sbjct: 123 AAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+        YI T  G GY++R +
Sbjct: 183 HLLQAVWGFEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMMRSS 234


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 12/223 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYE---FDAIILDLGLTDI 57
           +IL+++D+  +   +   L  E +NV      EDG+E    FYE      +ILD+ +  +
Sbjct: 5   KILVVDDESRMRKLVRDFLVREGYNVLEA---EDGVEAMDIFYEEKDISLLILDVMMPRM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V R +R +    P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWQVCREIRESS-KVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILR 120

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+ G  A  ++  G ++++  A  V++ G  I L+ KE++++      +   L++E  LN
Sbjct: 121 RTLGSDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++     + + ID  + KLR KL +      YI T+WG GY
Sbjct: 181 NVWNYDYFGDARTIDTHVKKLRSKLGDKG---EYIRTIWGMGY 220


>gi|153011101|ref|YP_001372315.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562989|gb|ABS16486.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+ A+   + + L +E + V     G +  E     + D ++LDLGL D  G 
Sbjct: 6   LKILVVDDEPAIRKLLRVGLTTEGYTVVEAVNGGEADERITTEKPDIVVLDLGLPDTDGH 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +L+  R   ++ P+ +LS  +     VR L+ GADDY+ KPF  +EL AR+R  +R   
Sbjct: 66  ALLQRWRETGVTLPILVLSSRTDEAGIVRALEEGADDYVPKPFGMKELAARLRVALRHRL 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + L  +  L+V+L  + V++ G  I L+ KEY ++ LL       LT    L+ +
Sbjct: 126 QQQGEKPLFQSDGLTVDLVRRIVKLNGEEIKLSPKEYDILRLLVQHAGKVLTHHFILSQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +V+ + +++ +LR+K+  +    +YI T  G GY LRE
Sbjct: 186 WG--PAADVQYLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   +   LK   + V   + GE+     +    D ++LD+ L  + G  +
Sbjct: 4   VLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDGLSL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R+ R   I  PV  L+      D+V GL  G DDY++KPF   ELV+R++A++RR+   
Sbjct: 64  CRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAAS 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +G A   I  GD+ +      VEV G  + LT +E+ ++ +++ +     T++  L+
Sbjct: 124 SRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + +I+DV +  LR K+        YI TV G GY
Sbjct: 184 RVWGYTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGY 226


>gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
 gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus
           CTV-05]
          Length = 221

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 116/203 (57%), Gaps = 1/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  L   + + ++   ++V   D G   +E  K   +D I+LD+ +  + G 
Sbjct: 1   MKILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T + +L+  + ++D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLRSKERRED 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GD+++N+  + + V  + I L+G E Q++    L +N  L+ E  LNH++ 
Sbjct: 121 DFTPNKLELGDVTLNVSKQEL-VSHNSIRLSGTETQLMNYFLLNQNKELSTEELLNHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
              +    ++ ++I  LR+KL +
Sbjct: 180 NDIDANADVVWIYISYLRQKLQS 202


>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 224

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED+  +A  IE  LK    +V V   G  G  + +   FD +ILD+ +  I G E
Sbjct: 3   KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    R +     PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|227327472|ref|ZP_03831496.1| two component transcriptional regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 196

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 6/174 (3%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL D  G  ++  LR      PV IL+   +++D++ GL +GADDY+ KPF   E
Sbjct: 19  VLLDLGLPDGDGMSLMANLRQQFKGIPVIILTARGTLQDRLAGLDAGADDYLVKPFVLAE 78

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L+AR+RA+ RRS G    +I    LS+++  + V V    I LT  EY ++E L LR + 
Sbjct: 79  LLARVRALARRSYGFQNEVIEIRGLSLHVPTRRVTVGARNIDLTASEYALLETLMLRTDR 138

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LT+  FL     G  E     +DV +  LR+K+     G+ Y+ TV G GYV+
Sbjct: 139 VLTRR-FLEEKIFGEKENMSNPLDVHMGNLRRKI-----GEGYVRTVRGVGYVI 186


>gi|78185337|ref|YP_377772.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78169631|gb|ABB26728.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 244

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59
           +R+L+++D++ L   + L L  E ++V V   G  G I+       D IILD  L D  G
Sbjct: 9   LRVLVVDDEQKLTDLLRLELDVEGYDVQVAGDGASGLIQSQTNPTPDLIILDWNLPDFSG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++ + +R   ++TP+ +L+G   + D+V+ L +G DDY+ KPF+ +EL+AR+RA+ RR 
Sbjct: 69  IDICQRIRAHGVTTPILMLTGHDEVTDRVKALDAGVDDYLIKPFSIDELMARLRAMHRRM 128

Query: 119 -------SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                  + G  Q+ L+   DLS+N   + V      IHL+ KEY ++  +  R    L 
Sbjct: 129 ATFASPSNDGSVQTELLQVADLSMNTRTRDVRRGDKSIHLSVKEYDLLNFIMRRSGRVLE 188

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  +  ++      +  ++DV+I  LR+K+         I T+ G G++LR
Sbjct: 189 RQEIMRGVWGENFFGDDNLLDVYIRYLRQKIE-IDSNLTLIHTIRGVGFILR 239


>gi|110639115|ref|YP_679324.1| two component transcriptional regulator [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281796|gb|ABG59982.1| two component transcriptional regulator, winged helix family
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+K L  SI   L  E +   V     +G E    YE+D  I+DL +    G 
Sbjct: 1   MKLLLIEDEKELRQSIISYLSHEGYVCEVARTFAEGQEKINSYEYDCFIVDLMMPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ ++   I   + I+S  +++ED+++GL  G+DDY++KPF+  EL AR+++IVRR +
Sbjct: 61  DLIQEIKSKNIKGGIIIISAKNTLEDRIKGLDLGSDDYLTKPFHLSELNARLKSIVRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                 I+  ++ +  +   V V   R+ LTGKE++++      K   L K+    H++ 
Sbjct: 121 FDGNKDIIFNEIRLIPENHEVFVNDTRVTLTGKEFELLLFFISNKGRVLPKDSIAEHIWG 180

Query: 180 DGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D+      I   I  +R+KL + AG K+Y+ TV+G GY
Sbjct: 181 DHMDQSNSFDFIYTHIKNMRRKLVD-AGCKDYLTTVYGIGY 220


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +A  + +      + V V   G   +EL      D  ILD+ L D+ G 
Sbjct: 31  VRVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVMLPDMDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      P   L+   + ED+V GL +G DDY++KPF+ EE++ R   +V+RS 
Sbjct: 91  DVLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSG 150

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G ++ L+V GDL +N     V   G  I LT  +Y +++ L     T L+KE  L  
Sbjct: 151 VVSGGSEVLVV-GDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQD 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+   A     I T+ G GYV+R
Sbjct: 210 VWGYDFGGRANIVELYISYLRKKID--ADRDPMIHTIRGAGYVIR 252


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  +   +++ L+ EN+ V+  D GED I++    ++D I+LDL L  + G 
Sbjct: 6   INLLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R AK  TP+ +L+       ++ G + GADDYI KPF+  E+V R+ AI++R++
Sbjct: 66  EVAGKIREAK-DTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-------IHLTGKEYQMIELLSLRKNTTLTKEM 173
                     DL + +    ++ Q HR       ++LT KEY ++  L+   +    +E 
Sbjct: 125 SSKPKEKANPDL-IEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGY 219
            L  ++      +++ +D  I +LR+KL+ ++      I TVWG GY
Sbjct: 184 LLREVWKYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGY 230


>gi|68536354|ref|YP_251059.1| two-component system response regulator KdpE [Corynebacterium
           jeikeium K411]
 gi|68263953|emb|CAI37441.1| two-component system response regulator KdpE [Corynebacterium
           jeikeium K411]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ALA+++ + L++  ++V V       I++   +   A++LDLGL D+ G E
Sbjct: 5   QILMVEDDVALANAVLVTLRARGYDVQVATTATKAIQVASKWHPQAVLLDLGLPDLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR      PV I+S       K+  L  GADDY++KPF+  EL+AR+RA +RR+ G
Sbjct: 65  VLRALR-NWTDIPVLIVSARHDESGKINALDEGADDYVTKPFSVGELLARLRAALRRAPG 123

Query: 122 HA---QSLIVTGDLSV--NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + ++ T D  V  +L  + V V G  +HLT +E+ + E +   + T +TK   L 
Sbjct: 124 APIPEEPVVETSDRRVVFDLPNQRVTVDGQDVHLTPREWGIAEHMIRHRGTLVTKVELLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    + E   + V+I +LR KL        Y  T  G GY L
Sbjct: 184 AVWGQAYKKETNYLRVYISQLRSKLEVDPSNPQYFTTETGIGYRL 228


>gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 246

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 19/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A +I   L++E F V     G   +   + +  + ++LD+ L    G E
Sbjct: 20  RVLVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   RG    L   GDL ++   + V V    +HLT  E+ ++  L+      L++
Sbjct: 139 ATIAATAPRGATLRL---GDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSR 195

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A+
Sbjct: 196 EQLLAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAQ 245


>gi|148257911|ref|YP_001242496.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146410084|gb|ABQ38590.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 221

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   +  ++    +   + V     G    EL +   +D I+LD+ L ++ GF
Sbjct: 1   MRILLVEDTPEIGAAVTSRFERIGYAVDWEKDGRTASELIEVQTYDLIVLDVMLPNMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   + TPV +L+  S+++D++  L  GADDY+ KPF+  EL AR RA++RR+ 
Sbjct: 61  AVLKHLRKRGLRTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  G L ++   +T  V G  + LT +E  ++E+L+ R    + KE  +  L+ 
Sbjct: 121 GQSDNLLTLGPLVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    ++ FI +LR+KL   A     I+T  G GY L
Sbjct: 181 FDQDPSPNAVEQFIARLRRKL---AATTVEIKTERGLGYQL 218


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESIVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  ++ + L +  + V     G   ++     + D ++LDLGL D+ G EV
Sbjct: 8   VLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGTEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  LR    + P+ +LS      DKV  L +GADDY++KPF  +EL+AR+RA VRRS   
Sbjct: 68  IAGLR-GWTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRRSAVA 126

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A +++ T   SV+L AK V    G  +HLT  E+ ++ELL   +   + ++  L+ 
Sbjct: 127 GADDADAVVDTASFSVDLAAKKVRRHDGVEVHLTKTEWGVLELLVRNRGRLVAQKQLLHE 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E E   + V++ +LR+KL        ++ T  G GY
Sbjct: 187 VWGPSYETESHYLRVYLAQLRRKLEREPSRPRHLLTEPGIGY 228


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  IE     E+  I+LD+ + +  G EV
Sbjct: 7   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS+  
Sbjct: 67  CAEIR-ERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +        L+V   L ++ DA  V  +G  ++LT KEY+++  L+   +    +E  
Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGY 231


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ALA  ++  L++E F+V ++  G++          D IILD  L  + G E
Sbjct: 4   KILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLSGIE 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  K   + P+ +L+      D++RGL  GADDY+ KPF+  EL+AR++AI+RR+
Sbjct: 64  LCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRRA 123

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +Q+L V  D+ ++ +   V   G  + L   E++++E L        ++   L+ 
Sbjct: 124 APERISQTLEVE-DIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDG 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ GRD   + + +DV I +LRK + N    K+ I TV G GY L E 
Sbjct: 183 VW-GRDVYVDERTVDVHIGRLRKAI-NRGKEKDPIRTVRGAGYALGER 228


>gi|290956971|ref|YP_003488153.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646497|emb|CBG69594.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 12/228 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++  + +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAVLARHGFDVTHARSGEEALQALVPEGNGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARR 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     S +  G + + L  + V V G  + L  KE+ ++ LL+ R      +E 
Sbjct: 120 RAPDEAATPGDSGLRLGPVLIELPTRQVSVDGTPVQLARKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++    E   + ++V +  LR KL   A     IETV G GY L
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRSKLRMPA----LIETVRGVGYRL 223


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     GE+ + + +    + I+LD+ +  + GF V
Sbjct: 13  ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFGV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + +R  +   P+ +L+G+  I D++ GL+ GADDY+ KPF+ +EL ARI++++RRS R 
Sbjct: 73  CQEIR-KESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDRM 131

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S I T      G L+++ + + V     R+ LTG E+ ++ELL  R  +  ++ + L
Sbjct: 132 TVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVIL 191

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  +  +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 192 QKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 240


>gi|37528607|ref|NP_931952.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36788046|emb|CAE17166.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++         ++  + +    G  
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALKFLDDSIDLLLLDIM-MPRKNGIT 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR+    TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRLHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q     G       +L +N   +        + LTG E+ ++ LL+      +++E  
Sbjct: 121 SEQQQTDNGPPTLQVDNLQLNPGRQEANFANQILDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPEREDGLPWFKTLRGRGYLM 227


>gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262]
 gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262]
 gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           S4-378]
          Length = 228

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
            H      + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 NHTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATDTKPFLHTVWGVGYKFDET 227


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|320325389|gb|EFW81454.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   +   L  E+F+V  T+  E+G         D ++LD+ +  I G EV
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMMPRISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R  
Sbjct: 64  LRRIR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAV 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFLN 176
                 + +I  GDL++    +    QG  + LTG E+ ++E L+      ++K+ + +N
Sbjct: 123 PVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMN 182

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 183 AM--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYLL 226


>gi|226356996|ref|YP_002786736.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318986|gb|ACO46982.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++IED+  +   +   L+     V   D     +E  +    DA++LD  L    G   
Sbjct: 4   VVVIEDEGTVRDVLRFHLERAGLRVTALDSTHGALE--QLGGADALVLDWMLPGESGLGF 61

Query: 63  LRALRV-AKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR LR  A++   PV +L+  ++  ++V GL+SGADDY++KPF+  ELVAR+RA++RRS+
Sbjct: 62  LRRLRADAELRRMPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRSQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G L V+++A    V G R++LT +E+ ++  L+       ++   L+ ++ 
Sbjct: 122 PDSPPTLTNGPLIVDVNAAEARVSGKRLNLTRREFDLLAFLTQNTGRVYSRTELLDRVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  + +LR  L +     +++ETV G+GY +R
Sbjct: 182 ADFLGGERTVDQHVTQLRAHLGDDPSKPDFLETVRGKGYRMR 223


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|312961406|ref|ZP_07775909.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311284301|gb|EFQ62879.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 189

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           ++LDLGL D  G  ++  LR      PV IL+   +++D++ GL +GADDY+ KPF   E
Sbjct: 12  VLLDLGLPDGDGMSLVACLRQQFRGIPVIILTARGTLQDRLCGLDAGADDYLVKPFVLAE 71

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L+AR+RA+ RRS G    +I    L +++  + V V G  + LT  EY ++E+L +R + 
Sbjct: 72  LLARVRALARRSYGFQNEVIEIRGLFLHMPTRRVTVSGRNVDLTASEYALLEILMMRADR 131

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LT+      L+ G  E     +DV +  LR+K+     G+ Y+ TV G GYV+
Sbjct: 132 VLTRRFLEERLF-GAKENMSNPLDVHMGNLRRKI-----GEGYMRTVRGVGYVI 179


>gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRIALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLSY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  ++ EDK+  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGS 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q   L+   +++V+L  + V   G  +HLT  E++++  L       +T+   L+H++ 
Sbjct: 127 QQESPLVSFSEITVDLINRRVLRNGEDLHLTPIEFRLLAELLANSGKVITQRQLLSHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEADPARPKHLLTETGVGY 225


>gi|262192308|ref|ZP_06050463.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93]
 gi|262031801|gb|EEY50384.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93]
          Length = 203

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 115/206 (55%), Gaps = 5/206 (2%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +++ L  + + V   + G   +   K  +F A+ILDL L D+ G EVLR +R A  + PV
Sbjct: 1   MQVALSRQGYTVDWLERGGGVVTALKTEQFTALILDLTLPDMDGLEVLRQIRRAGYTLPV 60

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVN 135
            IL+    I D+V+GL  GAD+YI KPF  EEL+AR+R I+RRS G A+ LI  G+L ++
Sbjct: 61  MILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRRSSGSAEELISVGELDLS 120

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
           L  + +      + LT  EY+++  L  +    ++KE+    L+   +      I+V I 
Sbjct: 121 LSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALHGWDEGCSDNAIEVHIH 180

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVL 221
            LRKKL +     N ++ V G GY++
Sbjct: 181 NLRKKLPD-----NLVKNVRGVGYMI 201


>gi|238922778|ref|YP_002936291.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
 gi|238874450|gb|ACR74157.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656]
          Length = 231

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL++EDDK +   I+ +L+ ++++V +   G + +E  K  E F  +I+D+ +  + G 
Sbjct: 3   KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALE--KIDESFSLVIMDIMMPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E  R +R  + S P+  LS  S   DK+ GL+ G DDY++KPF+  EL+++++A++RR  
Sbjct: 61  ETCRRMR-ERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYL 119

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +R +    I T  L +  +   VE   + I LTGKEY++++LL    +   T 
Sbjct: 120 VYDSGSANRTNKDETIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 172 EMFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           EM    ++D       K  + V I  LR KL  A G    I T WGRGY
Sbjct: 180 EMIYEMVWDEAFTYNAKNTVMVHIKNLRNKLIKACGDA-CIHTEWGRGY 227


>gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 240

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 14/228 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F ++Y    GE+GI +CK  + D IILD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGEEGIRMCKQVQPDLIILDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR++
Sbjct: 72  SVCQQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTK----EM 173
              ++ I+   GD++++ DA+   ++G   + LT KE+ ++  L    N   +K    E 
Sbjct: 131 YQEKARIMYQFGDITID-DAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEA 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                Y G D     I+ V I  LR+K+ +     +Y+ TV G GY L
Sbjct: 190 VWGETYLGNDN----IMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKL 233


>gi|161950137|ref|YP_402695.2| transcriptional regulatory protein YedW [Shigella dysenteriae
           Sd197]
 gi|309786827|ref|ZP_07681444.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
 gi|308925313|gb|EFP70803.1| transcriptional activator protein irlR [Shigella dysenteriae 1617]
          Length = 216

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 117/204 (57%), Gaps = 2/204 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA 204
              + +   +DV I +LR K+ + 
Sbjct: 179 INFDSDTNTVDVAIRRLRAKVDDP 202


>gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [Frankia alni ACN14a]
          Length = 259

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 22/239 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L  ++ + L S    V     G   +     +  D ++LDLGL D+ G +
Sbjct: 18  RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHPPDLVVLDLGLPDLDGID 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      P+ +LSG +S  DK+  L +GADDY++KPF+ EEL+ARIRA+ RR+ G
Sbjct: 78  VIRGLR-GWTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRRAGG 136

Query: 122 HAQSLIVT-GDLSVNLDAKTV-------------EVQG-------HRIHLTGKEYQMIEL 160
                ++T G   ++   KTV              VQG         + LT  E++++  
Sbjct: 137 AETGPVITLGRHRIDFATKTVTTLPDPATPSASESVQGAEPGPTPESVRLTPTEWRLLAT 196

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L       ++    L+ ++      +   + +++ +LR+KL        ++ T  G GY
Sbjct: 197 LVREPGKLISSRSLLDQVWGPGHADDTSSLRLYVNRLRRKLEPDPSRPRHLTTEPGMGY 255


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E+
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLSGIEL 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   PV +L+      ++VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 65  CRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRAK 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  +L+  GD+ ++ +   V   G  +HL   E++++E L        ++E  L+ ++
Sbjct: 125 PEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 185 GQDVYIDERTVDVHVGRLRKAI-NRGRQSDPIRTVRGAGYSFNE 227


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED++ +A  I   L+     V V   G     + +   FD ++LD+ +  + G E
Sbjct: 8   KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDGLE 67

Query: 62  VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R+ +   TPV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR +
Sbjct: 68  VCRQFRLKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRGK 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++ D +        I LT KEY+++E     +   L++   L  ++D
Sbjct: 128 ERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLTLLKDVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+      K  I T+ G GY++
Sbjct: 188 KNFDTNTNVVDVYVNYLRNKIDREFEVK-LIRTIVGMGYIM 227


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 128/232 (55%), Gaps = 18/232 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG---IELCKFYEFDAIILDLGLTDI 57
           + IL+++D++ +   +++ L+ EN   YV D   DG   +E     ++D I+LDL L   
Sbjct: 8   IHILVVDDEERIRRLLKMYLEREN---YVIDEAGDGNVALEKALANDYDVILLDLMLPGK 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++R
Sbjct: 65  DGIEVCKEIREHK-TTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLR 123

Query: 118 RSRGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R+            + ++V   L+++ DA  V V G  + LT KEY+++  L+   +   
Sbjct: 124 RAANATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA--GGKNYIETVWGRGY 219
            +E  L  ++      +++ +D  I +LR+KL+ A+   GK  I TVWG GY
Sbjct: 184 DREQLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGK-MIVTVWGVGY 234


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 119 -SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ L  + GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R A+ S P+ +L+  SS  DKV GL+ GADDY+SKPF  +EL+AR+RA++RRS+ 
Sbjct: 65  LCRLIR-AESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 121 GHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++Q   V+G    +L +  +   V   G  +  + KE+ ++  +   +    ++E  L 
Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ G D P   + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVW-GYDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFEE 230


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  + V     G + +E  K      ++LDL L  + G++
Sbjct: 5   KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R  +   + PV +++      DK+ GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  VCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRT 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  +       G++ ++     V  +G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 125 KVDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV +  LR+K+ +      YIET+ G GY
Sbjct: 185 WGYEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGY 225


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++DD  + + +   L+ E+F+ Y    GE+ +     ++ D  I+D+ +  + GFE
Sbjct: 3   RCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMHGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RI+A++RR   
Sbjct: 63  LCHMIK-EDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRRYHI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    +  G+L+++     V V G  + L  KE+Q++ LL+  +    ++   +  ++  
Sbjct: 122 HTDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E + + IDV I +LR++L         I+TV G+GY
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSNVT-IKTVRGQGY 218


>gi|325526746|gb|EGD04261.1| two-component system signal transduction response regulator
           [Burkholderia sp. TJI49]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E   V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEYIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGTVSVDLALRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 224

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 123/222 (55%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++DD  + + I   L++E+ + Y    GE  ++L +    D  ++D+ +  + GF
Sbjct: 2   VQCLVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L+      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR  
Sbjct: 62  QLCNTLK-NDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
            ++ S +  G+L++N     ++V    + L  KE+Q++ +L+ R     T+E  +  +  
Sbjct: 121 INSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG 180

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           YD G DE   + +DV I +LR++L         IETV G+GY
Sbjct: 181 YDYGGDE---RTVDVHIKRLRQRLKKLNATLT-IETVRGQGY 218


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-KESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  ++++   
Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G ++++ + +TV V G  I LT KE+ ++ +L+       + E 
Sbjct: 123 TLNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|229493212|ref|ZP_04387004.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus
           erythropolis SK121]
 gi|229319943|gb|EEN85772.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus
           erythropolis SK121]
          Length = 226

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + L    + V     G   +        D ++LDLGL D+ G E
Sbjct: 3   RILVVDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAERPPDVVVLDLGLPDMDGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA  RR   
Sbjct: 63  VLAGLR-GWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   +  + T   +V+L AKTV  +G ++HLT  E+ M+E+L   +   + ++  L  +
Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 182 WGPAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGY 222


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   +   L + N+ V      E G +L   ++ D ++LD  L  + G  +
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R      +TP+ +L+      D+V+G +SGADDY+ KPF+   LVAR++A++RR  
Sbjct: 66  AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  LI  G L ++L +    V    + L   E+++++      N   T+   L+ +
Sbjct: 126 PEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I +LR KL +  G  +YI+TV G GY
Sbjct: 186 WGENVVVEERTVDVHIRRLR-KLLDPVGAADYIQTVRGAGY 225


>gi|77459613|ref|YP_349120.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383616|gb|ABA75129.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 235

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           R+LL+EDD+ LA  I   L+   + V     G+  + +  F EF    ++LDL L    G
Sbjct: 8   RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGD--LAVAAFLEFKPKVVVLDLMLPGQSG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR 
Sbjct: 66  LHVCREIRSVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQ 124

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +   S +  G+L ++   + V + G  I LT  E++++ LL+      L+++  LN 
Sbjct: 125 VPDSGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNR 184

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +DG +    + +DV+I KLR KL +       I+TVWG+GY+    A
Sbjct: 185 MRGIAFDGLN----RSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFA 232


>gi|28377207|ref|NP_784099.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28270038|emb|CAD62938.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 234

 Score =  112 bits (280), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++ED+ +L+  +   L+ E+FNV V   G   +E  + +  E   I+LD  L  + G 
Sbjct: 5   ILIVEDEGSLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I RR  
Sbjct: 65  EVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   V     V LD K   V      + LT +EY +++      +   T++  L+ +
Sbjct: 124 NQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      +  ++DV++  LR K++   G    I+TV G GY LRE   D
Sbjct: 184 WGADFLGQQNVVDVYVGYLRNKIT-TTGASPLIQTVRGVGYKLREPMSD 231


>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 230

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED++ +A  I   L+     V V   G     + +   FD ++LD+ +  + G E
Sbjct: 8   KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDGLE 67

Query: 62  VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R+ +   TP  +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR R
Sbjct: 68  VCRQFRLKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRGR 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++ D +        I LT KEY+++E     +   L++ + L  ++D
Sbjct: 128 ERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLVLLKDVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+      K  I T+ G GY++
Sbjct: 188 KNFDTNTNVVDVYVNYLRNKIDRDFEVK-LIRTIVGMGYIM 227


>gi|312958365|ref|ZP_07772886.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311287429|gb|EFQ65989.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 246

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR A   TP+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRGANNQTPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELK-RGDEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|300702706|ref|YP_003744306.1| response regulator (ompr family) in two-component regulatory system
           with kdpd, regulation of potassium translocation
           [Ralstonia solanacearum CFBP2957]
 gi|299070367|emb|CBJ41662.1| response regulator (OmpR family) in two-component regulatory system
           with KdpD, regulation of potassium translocation
           [Ralstonia solanacearum CFBP2957]
          Length = 234

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L++E   V+  D  + G+      + DA+ILDLGL D  G  +
Sbjct: 12  VLVIDDEPHIRRFVRAALEAEGCEVFEADRVQRGLIEAGTRQPDAVILDLGLPDGDGMSL 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR      PV +LS      DK+  L +GADDY++KPF   EL+AR+R ++RR   R
Sbjct: 72  IRDLRTWT-EVPVLVLSARVDERDKIDALDTGADDYLTKPFGVGELIARLRVLLRRHAKR 130

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+I  GD+ V+L  + V   G  +HLT  EY+++ +L  R+   +T    L  ++
Sbjct: 131 GEDGGSIIAFGDVQVDLARRLVSRNGEPVHLTPIEYRLLSVLLGRRGAVMTHRELLREVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 191 GPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGY 230


>gi|293189576|ref|ZP_06608295.1| DNA-binding heavy metal response regulator CopR [Actinomyces
           odontolyticus F0309]
 gi|292821476|gb|EFF80416.1| DNA-binding heavy metal response regulator CopR [Actinomyces
           odontolyticus F0309]
          Length = 219

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L++  F   +   G + +E         ++LD+GL DI GFEV
Sbjct: 4   ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+AR+R  +R     
Sbjct: 64  LEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREETPT 123

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++ +T G L ++L  +   V    + L+ +E+ ++E         L++E  L+ ++  
Sbjct: 124 SSAMTLTRGSLVLDLKTRRACVGEEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVWGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    ++DV++  LR+K+     GK+Y ETV G GY L
Sbjct: 184 DFDGASNVVDVYLSYLRQKI-----GKDYFETVRGMGYRL 218


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 8   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 68  MQVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 231


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 122/238 (51%), Gaps = 13/238 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I+L L+ E F  Y    G   I+  +  + D IILDL L  + G 
Sbjct: 1   MDILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGL 60

Query: 61  EVLRALRVAKISTP----VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           EV    R+ +   P    + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++
Sbjct: 61  EV--CARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALL 118

Query: 117 RRSRGHA-QSLIV-TGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS  H+ QSL+  T   +V++D  T   Q        + LT  E+ ++   + +     
Sbjct: 119 RRSLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVW 178

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   ++ L+      + +++D  + +LRKK+        +I+TV G GY   +N  D
Sbjct: 179 NRTQLIDKLWGNDFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDNRVD 236


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AVVAATTPRTGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 240


>gi|319790733|ref|YP_004152373.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593196|gb|ADU34262.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 229

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIP 58
           MRILL+EDD  L   +   L      V V+   ED   L +   FDA++LDL L  T  P
Sbjct: 1   MRILLVEDDAVLRDVMLRSLADAGHRVDVSTNVEDADHLWRVQPFDAVLLDLNLPATASP 60

Query: 59  ------GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
                 G   LR  R     TPV +L+     E+++ GL +GADDY+ KPF+  E+ AR+
Sbjct: 61  TSGLASGLTALRQARARGDRTPVLVLTARGRTEERIAGLDAGADDYLGKPFDLAEVEARL 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA+VRR++G  + +++ G L ++  A+     G  + L  +E++++  L      T++K 
Sbjct: 121 RALVRRAKG-TEDIVLLGQLKLDRKARRFSTAGGPLDLPAREFEVLWELMSPPGRTVSKR 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + L    +      ++ FI +LRKKL    G    I T+ G GY+L
Sbjct: 180 ALSDKLSSFDESLGDNALEAFISRLRKKL---LGTGASIRTLRGIGYLL 225


>gi|294678357|ref|YP_003578972.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
 gi|294477177|gb|ADE86565.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
          Length = 233

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L++DD+ +  S+ + L++E + V   + G+  ++       D  +LD+ +  + G E
Sbjct: 3   RIALVDDDRNILTSVSMTLEAEGYEVETYNDGQAALDAFSKRLPDMAVLDIKMPRMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR  K + PV  L+      D+V GL+ GADDY+ KPF++  LV RIRA++RR   
Sbjct: 63  LLQRLR-QKTTMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQEA 121

Query: 119 -SRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            S G A       +IV G LS++    +V  +G  + LT  E+ +++ L++R     +++
Sbjct: 122 ISTGEAPVAEDTKVIVRGSLSMDPLRHSVTWKGREVTLTVTEFLLLQALAIRPGFVKSRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  YD +   + + ID  I +LRKK+       + IET++G GY
Sbjct: 182 QLMDVAYDDQVYVDDRTIDSHIKRLRKKMRTVDDDFSAIETLYGIGY 228


>gi|261366315|ref|ZP_05979198.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571914|gb|EFB77449.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 218

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 125/224 (55%), Gaps = 11/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  IE+ L    +   V   G    +L +  ++D  +LD+ L  + G+E
Sbjct: 3   QVLIVEDEHLIARLIEMSLTRAGYACTVAGDGRTAADLIEANDYDLALLDIMLPGLDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +L  LR   +  PV  ++   +++++V GL+ GADDYI KPF  EEL+AR+ +++RR+ R
Sbjct: 63  LLDYLRPQGV--PVIFITAKGTVKERVEGLRRGADDYIVKPFVVEELLARVESVLRRAGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+        D+ ++    TV   G  + LT  E+Q++E L   +   L ++     ++ 
Sbjct: 121 GNVMQAF---DVVLDAGEHTVTQNGQPVDLTPNEFQLLEQLMRNRGAALYRDTLYERVWG 177

Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G R E + + +D+ I +LR+KL       ++IETV+  GY L++
Sbjct: 178 GDRAETDTRTLDLHIMRLRRKLH----WYDHIETVYRIGYRLKK 217


>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 226

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 113/218 (51%), Gaps = 4/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + + L    F V     G   +E  +    D IILD+G+ ++ G EV
Sbjct: 2   ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPEMDGLEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR      P+  L+  +   D+V GL+ GADDY+SKPF+  ELVAR+RAI++RS G 
Sbjct: 62  CRALRKTS-DVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSNGE 120

Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +V   G +SV+       V+   + LT +E  ++E L  R +  +++   ++ +Y 
Sbjct: 121 VAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLVDAIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
                  + +D  +  LR KL   AG  + IETV G G
Sbjct: 181 TNVNVSDRTMDSHLRNLRSKLGK-AGCADAIETVHGVG 217


>gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 232

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 230


>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 245

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED+  +A  IE  LK    +V V   G  G  + +   FD +ILD+ +  I G E
Sbjct: 24  KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    R +     PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 84  LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 243


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 15/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ + +R  KIS  P+ +L+    +ED++ G   GADDYISKPF+  E+VAR++A++RR+
Sbjct: 61  EICKEIR--KISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRT 118

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTK---- 171
                 L  +++ D  + +D    EV+ ++  I LT  E++++  L+       ++    
Sbjct: 119 DIETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLV 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+   H + G D    ++ID  I KLR+KL         I TV+G GY
Sbjct: 179 EIVQGHDFGGDD----RVIDAHIKKLRQKLEKVPSDPKIILTVYGVGY 222


>gi|302542007|ref|ZP_07294349.1| transcriptional regulatory protein CutR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459625|gb|EFL22718.1| transcriptional regulatory protein CutR [Streptomyces
           himastatinicus ATCC 53653]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIAVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VALPPVLERAGIKLDPNRREVFRDGKEIQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL   A     I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPA----VIVTVPGSGY 215


>gi|239944760|ref|ZP_04696697.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239991225|ref|ZP_04711889.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291448223|ref|ZP_06587613.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291351170|gb|EFE78074.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 230

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ +      E   F  I+LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAVLARHGFQVVHARNGEEALRALLPAEKEPFGVILLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + +TPV +++  + +  ++ GL  GADDY++KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVAR 119

Query: 118 RSRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R+     +          G +++ L  + V V G  + LT KE+ ++ LL+ R      +
Sbjct: 120 RTSSGEDTAPTPVAALRLGPVAIELPTRRVSVDGEEVQLTRKEFDLLALLAQRPGVVFRR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  ++ ++    E   + ++V +  LR KL         IETV G GY L
Sbjct: 180 EQIISEVWRTSWEGTGRTLEVHVASLRSKLRL----PTLIETVRGVGYRL 225


>gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM
           10507]
          Length = 223

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+ +DD  L   I+ +L+ +N+ V     G++ +E+  +  E   +ILD+ +    G 
Sbjct: 3   KILVADDDYLLRDLIKDILEEKNYEVLEAKNGQEAVEIFNQNPEISLVILDVMMPQYDGM 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R+   + PV IL+ +   ++++  L+SGA+DY++KPF+ E L+AR   ++R  R
Sbjct: 63  EVLRRIRLQS-NVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVR 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S +  G++ V+     V V+G  I LT KEYQ++  L   ++  LT++  L  ++ 
Sbjct: 122 NKSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +++ ID  I  LR  L +     +YI T+ G GY L
Sbjct: 182 FDYEGDIRTIDTHIKMLRMDLKSCG---SYIRTIRGMGYTL 219


>gi|332528949|ref|ZP_08404916.1| two component system regulatory protein [Hylemonella gracilis ATCC
           19624]
 gi|332041610|gb|EGI77969.1| two component system regulatory protein [Hylemonella gracilis ATCC
           19624]
          Length = 233

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+I+D+  +   +++ L+++ + V +   G +G+        D +ILD+GL DI G 
Sbjct: 7   VRVLVIDDEPQIRRFLDISLRAQGYEVTLAASGREGLAALADRGADLLILDIGLPDIDGH 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A    PV +LS  +   +KV  L  GA+DY++KPF  +EL+ARIR ++R+  
Sbjct: 67  EVLRELR-AWSQVPVIMLSVRAGESEKVMALDEGANDYVTKPFGTQELMARIRVLLRQQA 125

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H  +L   G L ++L  + V + G  + L  KEY ++ LL       +T+   L  +
Sbjct: 126 DVKHDNALFDDGHLRIDLARREVRLDGELLALGRKEYALLALLLKHAGRVVTQPQILREV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    + +   + + + KLR+KL + A    YI T  G G
Sbjct: 186 WGVTHQDDTHYVRILVGKLRQKLGDDAVAPRYIATEPGVG 225


>gi|327394622|dbj|BAK12044.1| transcriptional regulatory protein TctD [Pantoea ananatis AJ13355]
          Length = 223

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+ED   LA  ++  L  + F V +V D G       +  ++  ++LD+ L  + G
Sbjct: 1   MRLLLVEDTAELARWLQKALTQKGFAVDWVAD-GLAADHSLQSEDYALVVLDVSLPRLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL  LR    + PV +L+  ++++D+VRGL +GADDY++KPF  +EL AR+RA++RRS
Sbjct: 60  IEVLTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +      G L +N +   +  +   + LT +E  ++  L  R+   ++++      +
Sbjct: 120 QGQSPQNQTLGQLVLNGEGYFLLAE-KPLALTPRESSVLTTLMQRQGRPVSRQHLYEQTF 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              DE   + I++++ ++RKKL   AG    I T+ G GY L
Sbjct: 179 TLADEASPESIELYVHRVRKKL---AGSDVGIVTLRGLGYSL 217


>gi|323693531|ref|ZP_08107735.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
 gi|323502386|gb|EGB18244.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
          Length = 228

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ++   +E ++ S      V D G   + L K + +D I++D+ L D+ GF+
Sbjct: 4   KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   I TPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G  + N            I L+ KE  ++ L         TK+M   H+
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEEEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   I V+I +LR K+        +I TV G GY
Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGY 224


>gi|158423577|ref|YP_001524869.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330466|dbj|BAF87951.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 220

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED + +  +I    +   + V     G    EL +   +D ++LD+ L    GF
Sbjct: 1   MRILLVEDTEEIGRAIAKRFERIGYAVDWERDGRTAAELLEVQSYDLVVLDVMLPRQDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   + TPV +L+  S+++D++  L  GADDY+ KPF+  EL AR RA++RR+ 
Sbjct: 61  SVLKGLRGRGVRTPVLVLTARSAVDDRISALDLGADDYLIKPFDYRELEARARALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  G L+++   +T  V+G  + LT +E  ++E+L+ R    + KE  +  L+ 
Sbjct: 121 GQSDNLLRLGPLTIDRAGRTASVEGKALDLTRRELTVLEILASRPGRFVPKEELVEQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    ++ F+ +LR+KL   A     I T  G GY L
Sbjct: 181 FDQDPSPNAVEQFVARLRRKL---AATPVEIRTERGLGYQL 218


>gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2]
          Length = 246

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           IL+I+DD  L   +   L S  + + V++ G+ G+ E      +D I+LD+ +  + GF+
Sbjct: 20  ILIIDDDNELTDMLATYLSSMGYQIQVSNDGQAGLAEATAGGHYDLILLDVMMPKMDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LRV+  +TPV +L+      D++ GL+ GADDY+ KPFN  ELVARI+AI RR   
Sbjct: 80  VLKKLRVSH-ATPVLMLTARGDDYDRILGLELGADDYLPKPFNHRELVARIKAIFRRLSL 138

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S G  +  ++  +L ++  ++  +V    + LT  E+ ++ LL L   + +TKE    
Sbjct: 139 THSGGTIEQDLIVNELFLSSSSQVAKVGEVEMTLTSTEFSILRLLMLNTGSRVTKEEISL 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     +   + ID+ +  LRKK++ A      I+T+ G GY+L
Sbjct: 199 KVLGKSLQAFDRSIDMHVSNLRKKIA-AISNIEKIKTIRGVGYML 242


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 20  KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  + S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 80  TLEEIR-KEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 139 FNQQAGAIQKLNFYG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 198 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 241


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +   ++   K E F V+  + G  G+E+ K    D +ILD+ +  + G+
Sbjct: 1   MNILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGW 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V +++R ++K+  P+ +L+     EDK+ G + GADDY++KPF+ + LVA+++A+++RS
Sbjct: 61  KVCKSIRDLSKV--PIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRS 118

Query: 120 R---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++I    L +N  +  V++ G  I L+ KEY ++      K+  L+++  L+
Sbjct: 119 VIDIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLD 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    +  ++ +D  + +LR+KL + +   NYI TV G+GY    N
Sbjct: 179 RVWGFDYDGGLRTVDTHVKRLREKLKDKS---NYIVTVRGKGYKFEVN 223


>gi|255656291|ref|ZP_05401700.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450268|ref|ZP_06892029.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296878683|ref|ZP_06902688.1| response regulator VanR [Clostridium difficile NAP07]
 gi|296261031|gb|EFH07865.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296430490|gb|EFH16332.1| response regulator VanR [Clostridium difficile NAP07]
          Length = 238

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  LK +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLKPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ +LS  S   DKV GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIR-EKRNIPIILLSAKSEDMDKVIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++ +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++++       + I V I ++R+K+        Y++ VWG GY
Sbjct: 184 REIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGY 231


>gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 232

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 230


>gi|187935631|ref|YP_001885604.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187723784|gb|ACD25005.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 226

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +   +  ++K   + +     G D I+  K   +D I+LD+ L    G  
Sbjct: 3   KILIVEDNRDVNLLLANVIKEVGYEIKSVYTGLDVIKEIKKQNYDLILLDIMLPYKSGDV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R A    P+ I+S    +  KV  L+ GADDYI+KPF+ +E++ARI   +RR + 
Sbjct: 63  VLKEVR-AFSDVPIIIISAKDMVGVKVDLLKLGADDYITKPFDIDEVIARIETNLRRYKK 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G+ +  +   D+ +  D+K+V V+G  ++LT KEY ++ELL   KN   +K      
Sbjct: 122 DTIGNME--LTYKDIVLKADSKSVTVKGQELNLTVKEYNILELLMKNKNRVFSKANLYEF 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     + K I   I  LR KL      + YIETVWG GY L
Sbjct: 180 IWESEYLGDDKTIKTHISNLRSKLKEVNENEEYIETVWGMGYRL 223


>gi|170691706|ref|ZP_02882870.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170142990|gb|EDT11154.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 232

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRTALEDEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
           +R LR      PV +LS  +   +KV  L +GADDY++KPF   EL+ARIRA + RR++G
Sbjct: 68  IRELR-GWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   S +  G +SV+L  + V   G  IHLT  EY+++  L       LT    L  ++
Sbjct: 127 GANESSQVRFGAVSVDLALRQVTRDGAAIHLTPIEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR KL        +I T  G GY L
Sbjct: 187 GPSHVESYHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRL 228


>gi|169629667|ref|YP_001703316.1| putative two component transcriptional regulatory protein
           [Mycobacterium abscessus ATCC 19977]
 gi|169241634|emb|CAM62662.1| Putative two component transcriptional regulatory protein
           [Mycobacterium abscessus]
          Length = 249

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+++LA  I + L+ E + ++V   G   ++L +    D ++LD+ L D+ G 
Sbjct: 24  VRVLVVDDERSLAELISMALRYEGWEIHVAGDGMSAVKLARQVHPDIVVLDVMLPDVSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI----- 115
           EVLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA+     
Sbjct: 84  EVLRQLRDLYPGLPLLLLTAKDSLEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 143

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    G A+  ++ GDL ++ D+  V   G  I+LT  E++++  +       L+K   L
Sbjct: 144 IAGDSGDAR--LIVGDLVLDEDSHEVTRDGELINLTATEFELLRFMMRNNKRVLSKHQIL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++         +++++I  LRKK+    G +  I T+ G GYVL+
Sbjct: 202 DRVWSYDFGGRSNVVELYISYLRKKIDT--GREPMIHTLRGAGYVLK 246


>gi|293393250|ref|ZP_06637565.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291424396|gb|EFE97610.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 228

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 111/227 (48%), Gaps = 1/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED + LA  I   L +        +  E      +   +  +I+D GL D  G  
Sbjct: 3   RILLVEDHQQLAKLIGKGLAAAGIATDQVERSEQAWSATRQIAYQGLIIDRGLPDGDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR A    P  IL+   ++ D+V GL++GADDY+ KPF   ELVAR+RA++RR   
Sbjct: 63  LLRRLRQASSPVPCLILTARDALHDRVEGLEAGADDYLPKPFAMAELVARVRALLRRPAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                    D+ ++L+A  ++     I L   E Q++  L  R+   L +       +  
Sbjct: 123 RQPLQPGYQDVVLSLEAGAMQCGDKSITLAPAEMQIMSALIHRQGEVLRRSAMEAAGWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                   +DV + +LR+KL+ A G    I  V G GY LR+NA D+
Sbjct: 183 SVAITPNALDVALHRLRRKLT-AVGSSLQIVNVRGHGYALRKNAVDQ 228


>gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 242


>gi|256376282|ref|YP_003099942.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920585|gb|ACU36096.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 217

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   L+     V     G D   L    + D ++LDLGL D+ G 
Sbjct: 1   MRVLLVEDDDGVADALVEALRDHGHRVLRVSRGTDA--LLSHRDHDLVLLDLGLPDVDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+   S+PV +L+        VRGL+ GADDY+ KP    EL+AR+ A+ RR+ 
Sbjct: 59  DVLRKLRLVA-SSPVLVLTARGDERSVVRGLRLGADDYLVKPVRLGELLARMDAVARRTA 117

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  V   D+ ++L  + V V G    LT KE+ ++  L+ R  T ++++  ++ ++
Sbjct: 118 VTSTTEHVHVSDVEIDLPGRRVLVAGAEAKLTAKEFAILAALASRAGTAVSRQQLMDEVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +DV +  LR KL+        I T+ G GY L
Sbjct: 178 GDAYLAVSRSLDVHLASLRVKLAR----PGLITTIRGFGYRL 215


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   L+     V V + G   + +      D I+LD+G+ ++ G E 
Sbjct: 5   ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMDGLET 64

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R  R+ K S  P+  LS      D+V GL+ G DDY++KPF+  ELVAR+  I++R R 
Sbjct: 65  CR--RIRKTSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRP 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G+LS++L +      G  + LT  E+ ++E  + R N   T+E  L   
Sbjct: 123 KEAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASA 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y+       + ID  I  +R KL+  AGG   IETV G G+ L
Sbjct: 183 YNNAINVSDRTIDSHIRNIRAKLA-LAGGGGCIETVHGIGFRL 224


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +       L+   F V     G   + L +      ++LDL L  + G +V
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMDGLDV 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RALR   ++   P+ +L+      D++ GL+ GADDYI+KPF+  ELVAR+RA++RRS 
Sbjct: 65  TRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRSE 124

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       I  G L ++L+ ++V   G  I LT  E+ ++ +L+       T+   L+ +
Sbjct: 125 GSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLREN 224
           Y+       + ID  I  LR+K+  ++ G    I TV+G GY   E 
Sbjct: 185 YNTEYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKFAET 231


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 261

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           ++ILL+ED+++LA  I+  L    F  Y T   +DG E    +      FD I+LD  L 
Sbjct: 29  LKILLVEDEESLASFIQSEL---TFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLP 85

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G  V R +R  +   P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I
Sbjct: 86  IYDGITVARRIR-KESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVI 144

Query: 116 VRRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            RR +  A      Q+ +V G+L +++    V+V G  I LT KE+ ++  L        
Sbjct: 145 ERRLQREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVK 204

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           T++  LN ++    + +  ++DV+I  LR KL     GK  I TV G GYVLR + ++
Sbjct: 205 TRDDLLNEIWGYEYDGQTNVVDVYIRTLRNKLDVCGKGK-MIATVRGLGYVLRTDHEE 261


>gi|300766939|ref|ZP_07076852.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495477|gb|EFK30632.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 234

 Score =  112 bits (280), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/229 (34%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++ED+ +L+  +   L+ E+FNV V   G   +E  + +  E   I+LD  L  + G 
Sbjct: 5   ILIVEDEGSLSGYLTKELQFEDFNVLVAADGLAAMETYQAHQNELLLILLDWMLPKLDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I RR  
Sbjct: 65  EVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   V     V LD K   V      + LT +EY +++      +   T++  L+ +
Sbjct: 124 NQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      +  ++DV++  LR K++   G    I+TV G GY LRE   D
Sbjct: 184 WGADFLGQQNVVDVYVGYLRNKIT-TTGASPLIQTVRGVGYKLREPMSD 231


>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 238

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  + + + L L+ E   V     G + ++  +    D I+LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR LR      P+ +L+     ED+VRGL+ GADDYI KPF+  EL++RIRA++RR   +
Sbjct: 69  LRRLRQFS-QVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRRHYTA 127

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+ V   LS++   + V V G R++L   EY+++  L        T EM L  +
Sbjct: 128 PPVPQTLVQVDERLSIDFARREVLVSGERVNLRPTEYRLLYHLVQNAGYVQTHEMLLTKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + ++I  LR+K+        YI T  G GY
Sbjct: 188 WGPEYREESHYLRLYITYLRQKIEQDPANPKYILTERGVGY 228


>gi|81240494|gb|ABB61204.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 117/203 (57%), Gaps = 2/203 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L ++G L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSTLEISG-LRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSN 203
              + +   +DV I +LR K+ +
Sbjct: 195 INFDSDTNTVDVAIRRLRAKVDD 217


>gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G   + +   +  D ++LD+ +  + GF 
Sbjct: 13  RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR +   TPV  L+   + EDKV GL  G DDY++KPF+ +E++ARIRA++RRS G
Sbjct: 73  VVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRSTG 132

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +   D+ ++ ++  V   G  + L+  E++++  L       L+K   L+H
Sbjct: 133 PQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILDH 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++ +I  LR+K+         + T+ G GY LR
Sbjct: 193 VWNYDFNGDANVVESYISYLRRKVDTTE--PRLLHTIRGVGYTLR 235


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  SIE+ LKSE F +Y    G   +E+    +   I++D+ +  + G + 
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              +R  + + P+ ++S  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR  + 
Sbjct: 64  TVKIREER-NIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+     + ++ +G L +N   K V++ G  I +T  EY++IELL   K    + +    
Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++         + V I ++R+K+        +++ VWG GY
Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGY 225


>gi|300087967|ref|YP_003758489.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527700|gb|ADJ26168.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 233

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+ L+IEDD  +  S+    K    + ++  TD G  G++L +    D IILDLGL DI 
Sbjct: 1   MKALMIEDDPQIVDSVSWAFKMRWPDMDMVSTDSGNQGVQLSREQRPDIIILDLGLPDIS 60

Query: 59  GFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           GFEVL  +R  K S +P+ +L+      D V+ L++GADDY+ KPF + EL++RI+A++R
Sbjct: 61  GFEVLTDIR--KFSNSPIIVLTARKDEFDIVKALEAGADDYLVKPFRQMELLSRIKALLR 118

Query: 118 RSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+ G    + +  G L ++     + V G  I LT  E  ++  L    +  +T E    
Sbjct: 119 RTTGPKPDTTLSAGSLRLSPATGILHVDGREIPLTRTEEIIMSKLMQHHDDVVTYEALAE 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L++      V  + V+I +LR+K+         I    G GY+L
Sbjct: 179 ALWNDFYPDCVAALRVYIRQLRQKIEADVNNPKIILNKHGAGYML 223


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  +      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|197303952|ref|ZP_03168984.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC
           29176]
 gi|197296920|gb|EDY31488.1| hypothetical protein RUMLAC_02689 [Ruminococcus lactaris ATCC
           29176]
          Length = 236

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   +  +L   ++ V   D G +G+ L +    D ++LDLGL D+ G ++
Sbjct: 6   ILIIEDEKNIQTFMRKILIRHDYRVLCADTGTEGLSLIRSQCPDLVLLDLGLPDMNGNQI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           +R +R    S P+ ++S  S+  +KV+ L  GADDYI+KPF   EL+ARIR  +R S R 
Sbjct: 66  IRDVRTWS-SIPIIVISARSAEREKVQALDLGADDYITKPFGTSELLARIRTSLRHSNRM 124

Query: 122 HA-QSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H  Q L +       ++++   + + ++   +HLT  EY+++  L+      +T    L+
Sbjct: 125 HTDQELYIKAYRHDKMTLDFSKRLLTLEDEPVHLTPVEYKIVAYLAQNSGKVVTYASILS 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++    + + KI+ V +  +R+K+       +YI T  G GY + E+
Sbjct: 185 NVWGPYADDDNKILRVNMANIRRKIELDPAQPHYIFTEVGVGYRMAED 232


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +   V   G  G+   +  + D I+LDL L  + G EV
Sbjct: 4   VLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ A+++   PV +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RR  
Sbjct: 64  CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + I  G L ++++   V V G  + LT  E++++  L+ R     ++E+ L +++
Sbjct: 124 PASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +D  + +LR KL  AAG    I+TV G GY L E+
Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKL-GAAG--ELIKTVRGFGYKLEES 225


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ LK+E F VY    G++ +E  +    D  ILD+ L DI GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFHI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR    
Sbjct: 65  CQKIR-EKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123

Query: 119 -SRGHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +    QS+IV       L +N +     + G  + LT  E+ ++  L   +   +  E 
Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++  +       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630]
 gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile]
          Length = 244

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRK 242


>gi|71733650|ref|YP_273715.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554203|gb|AAZ33414.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   +   L  E+F+V  T+  E+G         D ++LD+ +  I G EV
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMMPRISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R  
Sbjct: 64  LRRTR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAV 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFLN 176
                 + +I  GDL++    +    QG  + LTG E+ ++E L+      ++K+ + +N
Sbjct: 123 PVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMN 182

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 183 AL--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYLL 226


>gi|308175115|ref|YP_003921820.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607979|emb|CBI44350.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328913439|gb|AEB65035.1| two-component response regulator SpaR [Bacillus amyloliquefaciens
           LL3]
          Length = 220

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/218 (33%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL ++D+K +   I  +L+ +   V + +  ED   L  F  +D I+LD+ +    G E+
Sbjct: 4   ILAVDDEKDILVLIRNILQRDQHTVTILEKAEDQ-SLDFFQGYDLILLDVMMPGTDGIEL 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R +R   + +P+  L+  S  E  V+GL +GADDYI+KPF  +EL+AR+ A VRR SR 
Sbjct: 63  CRRIR-PLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHVRRESRE 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q+  +      + D K V +   ++ LT  EY+++E L+  KN T ++E     +Y  
Sbjct: 122 KRQTKRLISGFMFDFDNKEVWLDDRKLPLTKNEYKIVEFLAQHKNRTFSREQIYEEVYGL 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +     I  FI  +RKK      G + I+TVWG GY
Sbjct: 182 DGDALYSTITEFIRTIRKKCKEH--GADPIKTVWGVGY 217


>gi|257091637|ref|YP_003165280.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048646|gb|ACV37833.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L +   +D  ILD+ L  I G+
Sbjct: 1   MKILVVEDEIKTGDYLRQGLTEAGFVVDLARDGLDGLHLAQTDAYDLAILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ +R A    PV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R  +RR S
Sbjct: 61  AVLQGIRRAGKDMPVLFLTARDQVQDRVHGLELGADDYMVKPFAFAELLARVRIHLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 KTKESEYLRAADLELDLMRRRVTRAGRRIDLTVKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+      K  I TV G GYVL
Sbjct: 181 DMNFDSDTNVIEVAIKRLRLKIDEDFELK-LIRTVRGMGYVL 221


>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
 gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
          Length = 242

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  S   DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +  +N+        ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  + S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIR-KEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGAIQKLNFYG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|270308724|ref|YP_003330782.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270154616|gb|ACZ62454.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++L IEDDK +  SI L+ KS   +       LG+ GIE    ++FD  I+DLGL DI 
Sbjct: 1   MKLLFIEDDKKIVESIFLLFKSFWPDMETKAVHLGKTGIETVYKHDFDIAIIDLGLPDID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VL+ +R A  S P+ IL+  ++ ++     + GADDYI+KPF   EL+AR++++++R
Sbjct: 61  GINVLKQIR-AFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKR 119

Query: 119 SRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                Q L I  G        K +  + + I+LT  E Q++ +L L K  ++     ++ 
Sbjct: 120 LNRTNQDLGIKYGHWKFGTSLKEISYKNNIINLTITEGQLLHIL-LTKGGSIVSYADISK 178

Query: 178 LYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              GR+E   K  I   I ++R+KLS     K +I  + G GY + E
Sbjct: 179 SIWGRNEYYAKETIKTHIMRIRQKLSRIDNAKEFIINIPGVGYQIVE 225


>gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48]
 gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48]
          Length = 227

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V  QG  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-DKALLHTVHGVGYRLAEG 223


>gi|107022426|ref|YP_620753.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116689374|ref|YP_834997.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170732684|ref|YP_001764631.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105892615|gb|ABF75780.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116647463|gb|ABK08104.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169815926|gb|ACA90509.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 241

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L    F V V   G+  +   + ++   +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAQLVREYLDGYEFAVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-------EELVARIRA 114
           V R +R A  + PV IL+  + + D+V GL++GADDY++KP            L+ R + 
Sbjct: 69  VCRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 128 AAAEAPAVAPDALVFGELAISPPNRTVTWRGEPVELKTAEFNLLLILARAAGTVLSRDDI 187

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 188 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 241


>gi|116669153|ref|YP_830086.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609262|gb|ABK01986.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD A+A +++  + S          G D   L +   F+ I+LDLGL D+ G 
Sbjct: 1   MDVLIVEDDDAMASALDAAVVSAGHTASRVARGADA--LLEHRRFEVILLDLGLPDMDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           +VLR LR      P+ IL+        V GL+SGADDY+ KP    EL+ARI A+ R   
Sbjct: 59  DVLRKLRQVT-PVPILILTARDDERSVVLGLRSGADDYLVKPVKLVELLARIEAVTRRAG 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS+   Q  IV G+L V+L+ +   V    + LT  E+ ++ LL+    + +T+E  L+ 
Sbjct: 118 RSKDSRQRSIVLGELEVDLERRVAAVGPRVLPLTATEFDLLALLAGHAGSVVTREQILDA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+        + +DV +  LR KL        +I  V G GY
Sbjct: 178 LWGDAFLASSRSLDVHLTGLRAKLQL----PGFIINVRGVGY 215


>gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 236

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R  +   P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIR-RESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|307720447|ref|YP_003891587.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978540|gb|ADN08575.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas autotrophica DSM 16294]
          Length = 220

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  LA  +   L+   F V   D     + + K   FD +ILDL L  + G E
Sbjct: 3   KILMIEDDLELAEILTEYLEQFEFEVITEDDPFKAVSILKLEPFDLVILDLTLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A+R  +   P+ I S  S + DK++ L+ GADDY+ KP++  EL ARI +++RR   
Sbjct: 63  VCEAIR-ERQDIPIIISSARSDVTDKIKALELGADDYLPKPYDPRELEARIHSVLRRYEA 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++    +  D   +    T+  +G  I LT  E+ ++  +  ++   +++E  ++++  
Sbjct: 122 KSEEKAESKSDFKCDKSTMTISYKGRNIDLTNAEFGILSYMISKQGLVVSREDLIHNVNA 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   K IDV + ++R KL    G K+ IE+V G GY L
Sbjct: 182 INEDSSNKSIDVMVGRIRNKL----GDKSLIESVRGVGYKL 218


>gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +  +I+  L+  ++ V     G + +++    + D IILD+ +  I G E
Sbjct: 5   KILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMISG-DVDLIILDIMMEGIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R  ++  P+  +S  +  EDKV+ L  G DDYI+KPF+ +EL ARI + +RR   
Sbjct: 64  LCRMIR-DRVDCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLRREER 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++ LT KEY++++LL L +    +KE     +
Sbjct: 123 IRSNERYLLSSKNMTIDLLANEVFCKGRKLPLTKKEYEIVKLLMLNQKVVFSKERIFERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + ++  +   I  +RKK+       +YI+T++G GY
Sbjct: 183 WGIDSDSQLDAVTESIKNIRKKIKAVDPETSYIQTLYGLGY 223


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ ++     E D  ILD+ L    G  
Sbjct: 4   KILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGASGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+   S  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++      +++IV   L +N++     +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182

Query: 176 NHLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ G +        I V I  LR+K++       YI+TVWG GY
Sbjct: 183 HEIW-GEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGY 227


>gi|330809135|ref|YP_004353597.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377243|gb|AEA68593.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 228

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED + LAH +   L +    V V +  +      +   + A+ILD GL D  G  
Sbjct: 3   RILLVEDHERLAHLVCTGLANAGIAVDVINRTDGAWSAIQRVPYQALILDRGLPDGDGLV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR A +  P  +L+   ++ D+V+GL +GADDY+ KPF  +E+VAR+RA++RR   
Sbjct: 63  LLKRLRSAGLGIPCLVLTARDALHDRVQGLDAGADDYLPKPFAMDEMVARVRALLRRPVD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   GDLS+  D  ++      I L   E Q I LL LRK   + +   +     G
Sbjct: 123 CRPLAPSHGDLSLQPDTGSMWCANESIALAPAEMQ-IMLLLLRKPGEIVRRQTIEAAGWG 181

Query: 182 RDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E      +DV + ++R+KL  A G +  I  + G GY LR+
Sbjct: 182 LSEAVTPNALDVALHRIRRKLL-AIGSRQRIVNLRGLGYALRQ 223


>gi|282865036|ref|ZP_06274089.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282559959|gb|EFB65508.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 234

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +  ++   L   +  V       + +     + FD ++LDLGL D+ G E 
Sbjct: 4   VLVVEDDQFVRSALIRHLTEASHTVRSVGTALEALREVAHFRFDVVVLDLGLPDLDGAEA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR +    PV I +      + VR L  GADDY++KPF+ E L AR+ A++RR+RG 
Sbjct: 64  LKMLR-SITDVPVIIATARDDEAEIVRLLNDGADDYLTKPFSVEHLSARMAAVLRRTRGP 122

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q+    ++  G LSV+   +  E+ G  + LT +E+ ++  L+ R    + +   L  +
Sbjct: 123 GQAPPPRVLQVGGLSVDPLRRQAELDGTALDLTRREFDLLAFLAGRPGVVVPRRELLAEV 182

Query: 179 YD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +    G D+     IDV +  LR+KL   A    Y+ T+ G G  L   A  E
Sbjct: 183 WQQSYGDDQ----TIDVHLSWLRRKLGETAARPRYLHTLRGVGVKLEPPAAPE 231


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ +    +   K+          G + IE+ K  ++D ++LD+ + ++ GF
Sbjct: 2   VRFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPNLDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R ++  K   P+ +LS      DK+ G + G DDY++KPF+ +EL+ARI+A+  R++
Sbjct: 62  TACREIKKIK-DVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSERAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G L V++  + + + G RI++T KE+ ++  L   K+  L++++ L+ +++
Sbjct: 121 GMKHSVYSFGGLEVDITGRNLIIDGERINVTPKEFDLLVFLIQHKDQALSRDVLLDKVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I  LR+   N    ++YI TV G GY    N
Sbjct: 181 YNYYGDYRTVDTHIKMLRQ---NLGPYRDYIVTVRGTGYKFEIN 221


>gi|271962011|ref|YP_003336207.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505186|gb|ACZ83464.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L + ++ V V   G   +     +  D +ILDLGL DI G +
Sbjct: 3   RVLVVDDEPQILRALRINLLARHYEVAVAADGGAALREAADWRPDLVILDLGLPDIDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    S P+ +LSG +   DKV  L +GADDY++KPFN +EL+ARIRA+ RR+  
Sbjct: 63  VIHGLR-GWTSIPIVVLSGRAGGADKVDALDAGADDYVTKPFNIDELLARIRAVTRRTAL 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H   L  I  GD  V+L  KTV      + LT  E+ ++E+L       +++   L  ++
Sbjct: 122 HDSELARIRIGDHVVDLVGKTVSGG---VRLTPTEWHLLEILLRNPGKLISQRRLLTEVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +   E   +  ++ ++RKKL        ++ T  G GY
Sbjct: 179 GAKYLKETHYLRQYMTQMRKKLERDPAHPVHLLTEPGMGY 218


>gi|171319543|ref|ZP_02908642.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095224|gb|EDT40217.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  ++KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGGVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G D +     +  D ++LD+ L D  GF 
Sbjct: 16  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+   ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R 
Sbjct: 76  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ +A  V   G  + L+  E++++  L +     +++   L+ 
Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     + ++++ +I  LR+K+ + A     I T+ G GYVLR
Sbjct: 196 VWNYEFGGDSRVVESYISYLRRKIDSTA--PPLIHTIRGVGYVLR 238


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 71  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 1   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR  +   P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELR-KESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V+ + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++        K + V +  LR K+  A GG+  I+TVWG GY
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGY 224


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-GKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V   +I LT KE+ ++ LL+       + E 
Sbjct: 123 TLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|66045291|ref|YP_235132.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255998|gb|AAY37094.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato Max13]
 gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato K40]
 gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
 gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DL  +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +     GK  ++TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-GKPLLQTVHGVGYRLAEG 223


>gi|330899231|gb|EGH30650.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|330830132|ref|YP_004393084.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565]
 gi|328805268|gb|AEB50467.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565]
          Length = 224

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL ED+  LAH +   L S  F V +V D G     L +  ++   +LD+ +  + G
Sbjct: 1   MRLLLAEDNHELAHWLSRALTSAGFAVDWVAD-GAQADHLLRHEQYALAVLDIEMPKLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL  LR      PV +L+   ++E+++ GL +GADDY++KPF+  EL AR+RA++RRS
Sbjct: 60  LAVLGRLRSRGQGVPVLLLTARGAVEERICGLNAGADDYLAKPFDLGELDARLRALLRRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L + G L+++ D   +     R+ LT +E  ++  L  R    + K      ++
Sbjct: 120 ESGGAELRL-GRLTLHPDGYFLLADA-RLALTPRELALLTALMYRHGRPVAKGQLFEQVF 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  DE  +  ID++I +LRKKL    G    I T+ G GY+L
Sbjct: 178 NLDDEVGLDSIDLYIHRLRKKL---VGSGVVITTLRGLGYLL 216


>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 239

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSIDSKVIEFGDFRLNLGTREMFRGDEPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N +  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVF 232


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKA-LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ +LI DD A +   +      E +N  +   GE+ ++L       A++LD+ +  + G
Sbjct: 1   MQNILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +EV R +R AK + P+ +++      +K+ GL  GADDYI KPF+  E++AR+RA++RR 
Sbjct: 61  YEVCRKIR-AKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRM 119

Query: 120 RGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                S        I   +L +NLD  ++ + G +I LT KE + +  L+   N   T++
Sbjct: 120 VAPESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRD 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ L+      + + +D  I +LR KL         I+T+WG GY
Sbjct: 180 NLLDSLWGFDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGY 226


>gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  KLLSNIRKSK-PMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCNDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
          Length = 221

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ + ++ G++
Sbjct: 3   RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +LR A+   PV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S++  G   + LD  TV    H   L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IITVRGLGY 218


>gi|281412186|ref|YP_003346265.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373289|gb|ADA66851.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 220

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 122/221 (55%), Gaps = 10/221 (4%)

Query: 2   RILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +I +++DDK +  ++ E + +      ++T  GED   L     F  ++LD+ L D  G+
Sbjct: 4   KIAVVDDDKNILKTVSEKLQQLGRVKTFLT--GEDF--LNDEEAFHVVVLDVMLPDYSGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R ++  +  T V +L+ +S  E  ++G ++GADDY++KPFN E L+ R++  + R +
Sbjct: 60  EICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLVRVKRFLEREK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L   GDL ++    TV ++G RIHL  KE++++  L+      +T+E  L   ++
Sbjct: 120 ---KGLYDFGDLKIDASGFTVFLKGKRIHLPKKEFEILLFLAENAGKVVTREKLLETFWE 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               P  +++D  I ++RK + +      YI+T+W  GY+ 
Sbjct: 177 DPVSP--RVVDTVIKRIRKAIEDDPNRPRYIKTIWSVGYMF 215


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 57  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 117 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 176

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 177 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 236

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 237 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 283


>gi|118619527|ref|YP_907859.1| two component transcriptional regulatory protein TcrX
           [Mycobacterium ulcerans Agy99]
 gi|118571637|gb|ABL06388.1| two component transcriptional regulatory protein TcrX
           [Mycobacterium ulcerans Agy99]
          Length = 234

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G EV
Sbjct: 11  VLVVDDEPVLADMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDVMLPDMSGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-----VR 117
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA+     V 
Sbjct: 71  LHRLRKENPRLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEIVLRLRALLRRTGVT 130

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                AQ  +V GDL ++ D+  V   G  I LT  E++++  +       L+    L+ 
Sbjct: 131 TVDSGAQ--LVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSNAQILDR 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+ N  G +  I T+ G GYVL+
Sbjct: 189 VWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLK 231


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  +
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTE 241


>gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 228

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +E  L++E F       G+  +EL + +  D I+LDL L +I G E
Sbjct: 8   RILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLMLPEIGGLE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +++  +   D++ GL+ GADDYI+KPF+  E+VAR+RA++RR  G
Sbjct: 68  VARTIR-AQSDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRRVGG 126

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A++  +   G ++V+LDA         + L+  + +++  L+  +   L++   L+ L 
Sbjct: 127 GARAARIYRVGAIAVDLDAFEARCGDEPVALSPTQLRLLAALAQAEGRALSRHELLDQL- 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G    + + +D  +  LR++L         IETV G GY LR
Sbjct: 186 -GEAYVDTRTVDAHVKNLRRRLGPCGA---QIETVRGVGYRLR 224


>gi|302388532|ref|YP_003824354.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199160|gb|ADL06731.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 129/230 (56%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K + + IE  L+  ++ V     G DG+ L      D I+LDLGL D+ G ++
Sbjct: 6   IVMIEDEKNICNFIESALERHDYKVNTAHNGRDGLALINSLCPDVILLDLGLPDLDGIDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++++R +  S P+ ++S  +   +KV  L  GADDYI+KPF   EL+ARIR  +R  R  
Sbjct: 66  IKSVR-SWTSIPIIVISARTQEHEKVAALDYGADDYITKPFGTSELLARIRTALRHGRPT 124

Query: 123 AQ----SLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 S+I T      L ++   + V ++GH+IHLT  EY+++ LL++     LT +  
Sbjct: 125 VSTVDGSVIPTPYKSDGLVIDFAKRLVTLEGHKIHLTQIEYKLVSLLAIHSGKVLTYDYI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++H++    +   +I+ V +  +R+K+       NYI T  G GY ++E+
Sbjct: 185 ISHIWGPYADNNNQILRVNMAHIRRKIEINPAEPNYIFTEIGVGYRMKES 234


>gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+   +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +    V G+L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRL 221


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 71  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 237


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233


>gi|167773001|ref|ZP_02445054.1| hypothetical protein ANACOL_04389 [Anaerotruncus colihominis DSM
           17241]
 gi|167664934|gb|EDS09064.1| hypothetical protein ANACOL_04389 [Anaerotruncus colihominis DSM
           17241]
          Length = 226

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ L  ++   L+ E +   V   G+DG    +    D I+LD  L    G 
Sbjct: 1   MRILIIEDDEKLCEAMRFALEMEGYIADVCHDGDDGFRWAREQAHDLILLDRMLPSTDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA-RIRAIVRRS 119
           E+L+ LR    +TPV +++ +  I  +V GL +GADDY+ KPF  EEL+A       R  
Sbjct: 61  ELLKRLRAQGHTTPVLLVTALGDIGQRVEGLDAGADDYLVKPFAVEELLARVRAIRRRPR 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +  ++  GD + +   KT+   G    L+ +E +++E+L      TL + M L  ++
Sbjct: 121 QWESARVLQVGDAAFDAAQKTLTGPGGCCSLSKREAELMEILLANHGQTLPRSMLLTRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   +D +I  LR++L  AAG    I TV G GY L
Sbjct: 181 GPDAEVEDGNLDNYIHFLRRRL-KAAGSAVSIRTVRGVGYQL 221


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +  ++    +S  F V V   G   ++  +     A++LDL L    G +
Sbjct: 3   RILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSGQD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R    + P+ +LS  S + DKV  L+ GADDY++KPF+  EL+AR+R  +RR   
Sbjct: 63  ICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLIP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q +    ++ V+     +   G  + LT +E++M+      K+  +++   LN ++
Sbjct: 123 SIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                P  + +D  I +LR+KL        +  TV G GY
Sbjct: 183 GYHSYPTTRTVDTHILRLRQKLERDPADPIHFRTVHGTGY 222


>gi|115352373|ref|YP_774212.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282361|gb|ABI87878.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  ++KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGGVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 231

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+   +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +    V G+L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 SSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRL 227


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQ 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
              ++     +I +   ++N   + V + G  + +LT KE+ ++  L        ++E  
Sbjct: 120 ATGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|302552915|ref|ZP_07305257.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470533|gb|EFL33626.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 260

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 122/250 (48%), Gaps = 37/250 (14%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +A  +   L    + V   +    G       E + ++LDLGL D+ G 
Sbjct: 1   MRVLLIEDDERIAGPLAEGLARYGYTV---ERARTGSAALAAPEPEMVLLDLGLPDMDGL 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RALR  +   P+ +++      D+V GL+ GADDY++KPF   ELVARIRA+ RR+R
Sbjct: 58  DVCRALR-RRSDVPIIMITARGEEIDRVLGLELGADDYMAKPFGVRELVARIRAVTRRTR 116

Query: 121 ----------------GHAQSLIVT-------------GDLSVNLDAKTVEVQGHRIHLT 151
                           GH   ++ +             G L ++   + V + G  I L 
Sbjct: 117 PQTGAGADAPGSAAGPGHHHPVLTSAPDPTPVDAAQAVGPLVIDRRTRQVRLHGAAIALA 176

Query: 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211
            KE+ ++  L+L      +++  ++ ++D       K +DV +  LR+KL + A    +I
Sbjct: 177 PKEFDLLAYLALDPGAVCSRQQIVDQVWDPHFFGPTKTLDVHVAALRRKLGDPA----WI 232

Query: 212 ETVWGRGYVL 221
           ETV   G+ L
Sbjct: 233 ETVRRVGFRL 242


>gi|319792963|ref|YP_004154603.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595426|gb|ADU36492.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 221

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L   +   L+     V   D G       +  + DA++LDLGL  + G 
Sbjct: 1   MRILLAEDEHTLGTWLCKALEHAGIQVEWVDDGRLADRALQQRDHDALVLDLGLPGMDGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      P  IL+   S+ ++V  L +GADD+++KPF   EL AR+ A+VRR+R
Sbjct: 61  TVLQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L  +   +   + G  + L+ +E  ++  L  R    L+K+  L  ++ 
Sbjct: 121 GVEHPRLACGPLVYDSARRHFVLNGEALALSPREQAVLRALVQRSGEPLSKQQILERVFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + ++VF+ +LRK+L    G    I T+ G GYVL
Sbjct: 181 DDEEVHPEAVEVFVYRLRKRLD---GTGVRIVTLRGLGYVL 218


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 127/230 (55%), Gaps = 16/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYE--FDAIILDLGLTDIP 58
           +IL+++D+  +   + + L+ EN   YV D  E+G E + K  E  +D I+LDL +    
Sbjct: 8   KILVVDDEARIRRLLRMYLEREN---YVIDEAENGDEAIAKGLEANYDLILLDLMMPGTD 64

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR
Sbjct: 65  GIEVCRQVREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123

Query: 119 SRGHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +   +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    
Sbjct: 124 ASQTSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
           +E  L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 233


>gi|269929028|ref|YP_003321349.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269788385|gb|ACZ40527.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 256

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI++I+ D+     +  +L      V        G+      E DA++L+  L D+ G+
Sbjct: 1   MRIVVIDPDQTATRLVGFILGEAGHTVVQATTAAAGLHAVFERETDAVLLEAELPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E+ + LR  + + P+  +S   S   KVR  + GADD+I +P++  ELVAR+ A+ RR  
Sbjct: 61  ELCKELRGRRYTGPLIFVSEQGSTRAKVRAFEHGADDFIVEPYDPAELVARVGAVARRCQ 120

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R   Q++   +  GD+ + +   TV V G   + LT  E +++E L      T+++E  +
Sbjct: 121 RADYQAMGTVLKVGDVELAIGELTVRVAGREPVLLTPTEMRLLECLMRNSQITISRETLI 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +      E   +DV+I +LRKKL        Y+ TV G GYV R   +
Sbjct: 181 ERTWGYDFVGESNRVDVYISRLRKKLERDPAAPEYLHTVRGVGYVFRPAPR 231


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 18/237 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D + +   ++  LK   + V V   G++  +  K  + D IILDL L    G  +
Sbjct: 6   LLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLPGEDGLTL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A+ + PV +LS M    DK+ GL+ GADDYISKPFN  EL+ARI+A++RRS   
Sbjct: 66  CRNLR-AQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRRSTQI 124

Query: 123 AQSLIVTGDLSVNLDAKTVEV--------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +   VT    ++ +  T+++        QG  I L+  E+ ++++        L+++  
Sbjct: 125 TKQ--VTDSQILHFERWTLDINRRQLLNHQGINIILSSAEFSLLKVFLEHPQQVLSRDQL 182

Query: 175 LNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAK 226
           L+ L  GR E +V  + ID  + +LRKKL         I+T+WG GY L    ENAK
Sbjct: 183 LD-LAKGR-EGDVYDRAIDTQVSRLRKKLEKDPKQPCLIKTIWGGGYQLACEVENAK 237


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LD+ L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A++RRS 
Sbjct: 64  CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRSA 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   +     G + V++DA    V G  + LT  E++++  L  R     ++E  L  +
Sbjct: 124 ARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLEDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   E E + +D  + +LR+KL +   G++ +ETV G GY L
Sbjct: 184 WEMSSEVETRTVDTHVKRLREKLGS---GRDLLETVRGIGYRL 223


>gi|172061243|ref|YP_001808895.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993760|gb|ACB64679.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 232

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  ++KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEDEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  V+ G +SV+L  + V   G  +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVSFGGVSVDLAMRQVWRDGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        +I T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|332524383|ref|ZP_08400598.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332107707|gb|EGJ08931.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD A+A ++   L+ + F V    L  D     +     A +LD+ L D  G +
Sbjct: 4   RILLLEDDNAIAGTVAFALERDGFAVEAVTLLRDADAALRRTLPAAAVLDVALPDGNGLD 63

Query: 62  VLRALRV---AKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +LR  R    A+++T P+ +L+      D+V GL++GADDY+ KPF+  ELVAR+RA++R
Sbjct: 64  LLRRWRADGDARVATLPLLVLTARGEEIDRVLGLEAGADDYLPKPFSPRELVARVRALLR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+   A          ++   + +  +G  + LT  EY ++  L L +   L++E   + 
Sbjct: 124 RA---AMPRATPQVFELDEPGQRIRYRGAVLALTRLEYGLLRELILARGRILSREALFDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  + E   + +D  +  LR KL     G + I T  G GY L
Sbjct: 181 VWGTQAEAADRTVDTHVKTLRAKLREVHAGADPIATHRGLGYTL 224


>gi|329938393|ref|ZP_08287818.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329302366|gb|EGG46257.1| two-component system regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 289

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 123/265 (46%), Gaps = 51/265 (19%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +A  +   L    F V   D    G E       D ++LDLGL D+ G 
Sbjct: 1   MRVLLIEDDDRVAGPLTEGLGRFGFTV---DRARTGAEGLAAGACDMVLLDLGLPDMDGI 57

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RALR+ +   P+ +++  S   D+V GL+ GADDY+SKPF   EL+ARIRA+ RRS+
Sbjct: 58  EVCRALRL-RSQVPIIMITARSDEVDRVLGLEIGADDYVSKPFGVRELIARIRAVTRRSQ 116

Query: 121 -----------GHAQSLIVT--------------------------------GDLSVNLD 137
                      GHA S                                    G L+V+  
Sbjct: 117 AVFAGAAHAPSGHAPSGHSPVGHPPSGPGHPAAPGPAVRSAPPVPSGGPQRIGPLAVDRR 176

Query: 138 AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKL 197
            + V +    I L+ KE+ ++  L+       T++  L+ ++        K +DV I  L
Sbjct: 177 TRQVHLGQEPITLSPKEFDLLACLADDPGAVCTRQHILDTVWQPHYFGPTKTLDVHIAAL 236

Query: 198 RKKLSNAAGGKNYIETVWGRGYVLR 222
           R+KL + A    +I+T+ G G+ LR
Sbjct: 237 RRKLGDPA----WIDTIRGVGFRLR 257


>gi|296129072|ref|YP_003636322.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020887|gb|ADG74123.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 256

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 19/239 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A +I   L +E + V     G  G+      + D ++LD+ L  I G EV
Sbjct: 19  VLVVEDEPAIAQAIVHRLTAEGWTVEAVGDGHAGVAAAARLQPDVVVLDVMLPGIDGLEV 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R ++ A+   PV +L+      D + GL  GADDY++KPF+  ELVAR + ++RR+   
Sbjct: 79  CRQIQ-AERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKVLLRRTERA 137

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +V GD++++   + V+  G  +HLT  E+ ++  L+    T LT+
Sbjct: 138 ARAAERATVQQPDPPLVVGDVTIDSAQRRVQRAGTEVHLTPTEFDLLLTLASSPRTVLTR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228
           E  L  ++D  D    + +D  +  LR+KL     G + I TV G GY      +A DE
Sbjct: 198 ERLLADVWDWVDASGTRTVDSHVKALRRKL-----GPDLIRTVHGVGYAYEPVGDAPDE 251


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G D +     +  D ++LD+ L D  GF 
Sbjct: 10  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+   ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R 
Sbjct: 70  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ +A  V   G  + L+  E++++  L +     +++   L+ 
Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     + ++++ +I  LR+K+ + A     I T+ G GYVLR
Sbjct: 190 VWNYEFGGDSRVVESYISYLRRKIDSTA--PPLIHTIRGVGYVLR 232


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L++E F V     GE  +     +E   I+LD+ +  + G 
Sbjct: 7   IRVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L+       V +L+    I+D+V GL +GADDY++KPF+ EEL+ARI+A +R   
Sbjct: 67  AVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +   G  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E  I++V+I  LR+KL +       I T+ G GY
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDKE--HRVIRTLRGAGY 223


>gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
 gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 125/229 (54%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +  +L+   +       G + +     Y++D I+LDL L  + G E 
Sbjct: 6   ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLWAGQYDYDLILLDLMLPGLTGEEF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR ++ + P+ +LS  + +E +V  L+ GADD+I KPF+  E++AR+ A +RR R  
Sbjct: 66  IAELRKSR-TMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQF 124

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + ++  GDL ++ ++ +V   G  + +T +E++++ LL        T+E     
Sbjct: 125 SSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYEQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++ G    +   ++V I  LR KL+  +  + YI+TVWG G+ + E A+
Sbjct: 185 VWGGEYFGDDNTVNVHISNLRSKLAKVSSAE-YIKTVWGIGFKMNEEAQ 232


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +IL+++DD  L    +L+++      Y  D   D  EL +       D ++LD+ +    
Sbjct: 5   KILVVDDDAKLR---DLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGED 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V+R LR      PV +L+      D++ GL+ GADDY+ KPFN  ELVARI++++RR
Sbjct: 62  GLAVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRR 121

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +R      I  G  +++L  + +  Q   + LT  EY ++ +L+      +T
Sbjct: 122 HNATPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMT 181

Query: 171 KEMFLN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  +   L  G  E   + IDV I +LR+ L    GG  YI+TVWG GYV 
Sbjct: 182 REQLMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVF 233


>gi|190575618|ref|YP_001973463.1| putative two-component system response regulator transcriptional
           regulator [Stenotrophomonas maltophilia K279a]
 gi|194366953|ref|YP_002029563.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254521817|ref|ZP_05133872.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|144897135|emb|CAM73999.1| two-component system regulatory protein [Magnetospirillum
           gryphiswaldense MSR-1]
 gi|190013540|emb|CAQ47175.1| putative two-component system response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194349757|gb|ACF52880.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219719408|gb|EED37933.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/199 (35%), Positives = 108/199 (54%), Gaps = 2/199 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A ++   L+     V     G  G+ L   +EFDAI+LDL L  + G 
Sbjct: 1   MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  A+  TPV +L+   S+++K+ G  SGADDY+ KPF  +E+  R+ A+ RR 
Sbjct: 61  EVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    ++ TGDL  NLD   V  QG  + L     ++++ L       +T++     ++
Sbjct: 121 KGVQTRVLETGDLEYNLDTLEVRRQGKLLQLNPTALKILQALMEAAPAVVTRQELETRVW 180

Query: 180 DGRDEPEVKIIDVFICKLR 198
            G + P+   + V I  LR
Sbjct: 181 -GEELPDSDSLRVHIHGLR 198


>gi|83644287|ref|YP_432722.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632330|gb|ABC28297.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 10/179 (5%)

Query: 46  DAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK 105
           DAIILD+ L +  GF V R LR    +TP+ +L+    + D++ GL+ GADDY+ KPF  
Sbjct: 46  DAIILDVMLPEEDGFSVCRKLR-HDYTTPIIMLTARGEVTDRIVGLEIGADDYLPKPFEP 104

Query: 106 EELVARIRAIVRRSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
            EL ARI++I RR   HA +     L+   DL +NL  + V V G  + LT  E+++++L
Sbjct: 105 RELAARIQSITRR---HASTEKPVPLMYFRDLEINLTTQEVLVAGRPLTLTTSEFRLLQL 161

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +       +++  +N L     E   + ID+ + +LR+K+   +  + +I+TVWG GY
Sbjct: 162 FASAPGKVFSRDEIMNSLKGTEVELFSRAIDITVSRLRQKMKTKS-KREFIKTVWGAGY 219


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 9/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  ++L +    D IILD+ +  + GFEV
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R +    P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 64  SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGY 219
             E + + +DV I +LR++       K+Y   I TV G GY
Sbjct: 183 DYEGDERTVDVHIKRLRERFPE----KDYPFAIHTVRGLGY 219


>gi|299065114|emb|CBJ36278.1| Transcriptional regulatory protein [Ralstonia solanacearum CMR15]
          Length = 221

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 12/225 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LLIEDD  +   +E  L+   + V +V D G+  I++     +D ++LDLGL    G
Sbjct: 1   MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRD-GQTAIDVTAHQHYDLLLLDLGLPGQDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR LR      PV IL+   +++++VRGL  GADDY+ KPF   EL+AR+RA++RR 
Sbjct: 60  HAVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRR 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A  ++  G LS  LD  T EV+      + L+ +E+ +++ L LR    L++     
Sbjct: 120 GGAASPVLSNGMLS--LDPATHEVRAGDAEPVRLSSREFALLQALMLRPGAILSRGELEE 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +Y    E     ++  I  LRKKL     G   I+ V G G+++
Sbjct: 178 RIYGWGHEVASNAVEFLIHALRKKL-----GAESIKNVRGVGWMV 217


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F V  T  G +          D ++LD+ L DI G  
Sbjct: 6   RVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVMLPDIDGLL 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L  A    PV  ++   S  DKV GL  G DDY++KPF  EEL+ARI+A++RRSRG
Sbjct: 66  LAERLVHAIGPVPVVFVTARDSTADKVAGLARG-DDYVTKPFRMEELIARIQAVLRRSRG 124

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DL ++ + + V   G  I L+  E++++    + +   L+K   L+H++
Sbjct: 125 WDAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ ++  LR+K+         I T+ G GYVLR
Sbjct: 185 NYDFRGDANIVESYVSYLRRKIDTTE--PKLIHTLRGVGYVLR 225


>gi|283851240|ref|ZP_06368523.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573409|gb|EFC21386.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 225

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 128/226 (56%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++EDD   A  +   LK   + V +V D G + +       +DA+++D  L  + G
Sbjct: 1   MRVLIVEDDLEAAAYMVKGLKESGYVVDHVAD-GREALYRVAAEAYDAVVVDRMLPGVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++R +R A    PV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+ A++RR 
Sbjct: 60  LTIVRTMRSAGNLAPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRG 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A  + +   DL ++L  +TV   G  I L  KE+ ++E L       +T+ M L ++
Sbjct: 120 RADAPDTTLKLADLEMDLVGRTVRRGGKPIELKPKEFALLEYLMRHAGHVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV I +LR+K+      K  + T+ G GY LR++
Sbjct: 180 WDYSFDPQTNVIDVHISRLRQKIDKGQ-DKPLLSTIRGAGYSLRDS 224


>gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 217

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 9/219 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   ++  L+           G   ++  +   +D IILD+ L  + GFEV
Sbjct: 4   ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +         TP   LS  +S+ D+++G   GADDY++KPF   EL+AR+ A++RR++  
Sbjct: 64  IEQAN----KTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A S    G++ ++  +  V   G  +  T KEY+++E+L   +N  L++E  L  ++   
Sbjct: 120 A-SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E + + +DV I KLRKKL      ++ I+TV+  GY L
Sbjct: 179 FEGDTRTVDVHIQKLRKKLE----WEDRIKTVYKLGYRL 213


>gi|258512963|ref|YP_003189220.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|258513224|ref|YP_003189480.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634866|dbj|BAI00841.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635127|dbj|BAI01101.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637921|dbj|BAI03889.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638182|dbj|BAI04149.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640975|dbj|BAI06936.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641236|dbj|BAI07196.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256644030|dbj|BAI09984.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644291|dbj|BAI10244.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256647085|dbj|BAI13032.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647346|dbj|BAI13292.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256650138|dbj|BAI16078.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650399|dbj|BAI16338.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256653129|dbj|BAI19062.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653390|dbj|BAI19322.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256656182|dbj|BAI22108.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
 gi|256656443|dbj|BAI22368.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 227

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   +   L S+ + V     GE  + +      D ++LDLGL D+ G +V
Sbjct: 6   VLVVDDEPAIRRLLRTALGSQAWRVIEARTGEMALNMAMEVVPDIVVLDLGLPDMDGVDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR A  + PV ILS       KV  L++GADDY++KPF+  ELVAR+R  VR +   
Sbjct: 66  LRRLRSAHPTLPVVILSVRDDERGKVAALEAGADDYVTKPFSMAELVARMRNAVRHALQQ 125

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L V+GDLS++L  + +      I L+ +E+ ++ +L       LT +  ++ L+ 
Sbjct: 126 EGTIPLFVSGDLSIDLVRRQISRGESEIRLSPREWDILRMLVRYAGRVLTHQTIMSQLWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +V+ + V+I ++R+K+        +I T  G GY
Sbjct: 186 ATG--DVQQLRVYIRQIRQKIEIDPERPRHIITETGVGY 222


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
             +L+I+D+  +   IE+ L +E + V+    G DGI +    +   ++LD+ +  I GF
Sbjct: 2   FNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V   +R    + P+ +LS  S   DK++GL +GADDY+ KPFN  EL+AR+++ +RR  
Sbjct: 62  QVCMKIR-KDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYV 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 ++ +   +I   D+++N     V   G  + LT  EY+++ LL+    T  + E
Sbjct: 121 FLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  +       + V I +LR+K+         IETVWG GY + E
Sbjct: 181 DIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231


>gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+A  +  +++S  F     + G     +    +FD I+LD  L    GF +
Sbjct: 15  ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFSI 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A  S P+ +L+ +    D++ GL+ GADDY++KPFN  EL+ARI++I+RR S  
Sbjct: 75  CRRLRAA-CSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASYA 133

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           H Q      ++ +G     +D K+ ++    G ++ +T  E+ ++       N  LT+E 
Sbjct: 134 HHQEEALGPMMFSG---WRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQ 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+  + G   P  + ID  I ++R+K+        +I+TV   GY+ 
Sbjct: 191 LLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 238


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 21/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR  G
Sbjct: 98  LCRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRF-G 155

Query: 122 HA--------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           HA                 +  GDL V+ +   V   G RI LT  E +++   S    T
Sbjct: 156 HAGGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGT 215

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 216 VLSRDRLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLR 265


>gi|299065353|emb|CBJ36522.1| response regulator (OmpR family) in two-component regulatory system
           with KdpD, regulation of potassium translocation
           [Ralstonia solanacearum CMR15]
          Length = 231

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L++E   V+  D    G+      + DA+ILDLGL D  G  +
Sbjct: 9   VLVIDDEPHIRRFVRAALEAEGCEVFEADRVARGLIEAGTRQPDAVILDLGLPDGDGMSL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +  LR      PV +LS      DK+  L +GADDY++KPF   EL+AR+R ++RR   R
Sbjct: 69  IHDLRTWT-EVPVLVLSARVDERDKIDALDAGADDYLTKPFGVGELIARLRVLLRRHAKR 127

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    S+IV GD+ V+L  + V   G  +HLT  EY+++ +L  R+ T +T    L  ++
Sbjct: 128 GEDGGSIIVFGDVQVDLARRLVSRNGEPVHLTPIEYRLLAVLLGRRGTVMTHRELLREVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                     + +++  LR KL        ++ T  G GY
Sbjct: 188 GPAHSDSSHYLRIYMGHLRHKLERDPARPQHLLTEVGVGY 227


>gi|294139579|ref|YP_003555557.1| transcriptional regulatory protein RstA [Shewanella violacea DSS12]
 gi|293326048|dbj|BAJ00779.1| transcriptional regulatory protein RstA, putative [Shewanella
           violacea DSS12]
          Length = 237

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 18/234 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V +   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEIERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  S    G LS++  ++ + +    + LT  E++++ LL+ +    L+++   
Sbjct: 128 PPKVESHCLSF---GKLSIDPHSQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIY 184

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +L    +DG+D    + IDV I +LRKKL +       I+TVWG+GY+    A
Sbjct: 185 QYLLNIDFDGKD----RKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202]
 gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202]
          Length = 243

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   IE  LK E   V     G+  IE+      D +ILD+ + ++ G+EV
Sbjct: 15  ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDIKMPELNGWEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R  K +TPV +L+ +    DKV  L+ GADD++ KPFN  E+VAR++A++RR++ +
Sbjct: 75  LNKIR-QKAATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQQN 133

Query: 123 AQSL---IVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+    ++  ++ VN +  T  +    +   ++LT  EY+++ L+    +   T+   +
Sbjct: 134 QQTPNRNLIYKNIEVNTEIHTAYIYSDDKQQALNLTLTEYKILLLMLPHPHKVFTRSELM 193

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N     RD  E + +D  + KLRKK+ +  G  N +  V G GY L
Sbjct: 194 NQCLPDRDALE-RTVDSHVSKLRKKIED-LGLHNMLINVRGVGYRL 237


>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
           [Enterococcus faecium D344SRF]
 gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ + ++ G++
Sbjct: 3   RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +LR A+   PV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 63  LVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S++  G   + LD  TV    H   L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 123 NYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 183 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IITVRGLGY 218


>gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25]
 gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 222

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 5/217 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L+ E F      LG++ +   +    D +ILD+GL DI GFE 
Sbjct: 4   ILIVEDEAAIADTLIFALQGEGFTTTWLSLGQEALAYQRQTPADLVILDIGLPDITGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R    
Sbjct: 64  CKQLRRFS-EVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILKRIGPS 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +      V+L+   +  +   + LT  E+++++ L  +     ++E  L+ +    
Sbjct: 123 AAPAV----FQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAVGVAA 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    + ID  I  LR KL + A     I+T  G GY
Sbjct: 179 DAGYERNIDSHIKSLRSKLRSVAADAEPIQTHRGLGY 215


>gi|220911492|ref|YP_002486801.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858370|gb|ACL38712.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 12/223 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD A+A ++   + +          G D   L    +F+ I+LDLGL D+ G 
Sbjct: 3   MEVLIVEDDDAMAGALAAGVATAGHRTRRVARGADA--LLAHRDFEVILLDLGLPDMDGL 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +VLR LR  +I+  P+ IL+        V GL+SGADDY+ KP    EL+ARI A+ RR+
Sbjct: 61  DVLRKLR--QITDCPILILTARDDERSVVLGLRSGADDYLVKPVKLVELLARIEAVTRRA 118

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G     IV GDL ++L  +     G+ + LT  E++++ LL+    + +T+E  L+
Sbjct: 119 GRRTGTVPDTIVLGDLDIDLGRRIASRDGNVLPLTATEFELLALLARHAGSVVTREQILD 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+        + +DV +  LR KL        +I  V G GY
Sbjct: 179 ALWGDAFLASSRSLDVHLTGLRAKLQM----PGFIINVRGVGY 217


>gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 231

 Score =  112 bits (279), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|323485093|ref|ZP_08090446.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401649|gb|EGA93994.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
          Length = 228

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ++   +E ++ S      V D G   + L K + +D I++D+ L D+ GF+
Sbjct: 4   KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   I TPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G  + N            I L+ KE  ++ L         TK+M   H+
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEKEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +   I V+I +LR K+        +I TV G GY
Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGY 224


>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +++ +  +L    +       G + +   +   +  I+LDL L  + G 
Sbjct: 4   INILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLMLPGMSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR     T V  +S       K+  L++GADDYI+KPFN EEL+ARI A++RR+ 
Sbjct: 64  EVLKSLRQTS-DTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNS 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+     ++L   G L++N     V ++G  + LT +EY+++ELL        +K +   
Sbjct: 123 GNTSLSGKTLTYKG-LTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     E   I+V I  LR+KL+     + YI+TVWG G+ ++
Sbjct: 182 TVWEDLFLGEDNAINVHISNLRQKLAKIDPDEAYIQTVWGIGFKMK 227


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F V +   G++G++L    ++  II+DL L  + G+E
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMNGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR--------IR 113
           +   +R  K   P+ I+S  +   DK+R    GADDYI+KPF+  ELVAR        +R
Sbjct: 64  LCSHIRKNK-EVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + ++S   +  + + G L ++  A+ V V+   +  T +E+ ++E L+   N    K  
Sbjct: 123 LLGKQSPSPSSEIHIRG-LVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++      ++  + V + KLR+K+        YIETVWG GY
Sbjct: 182 LFERIWGMDSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGY 227


>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
 gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
           [Clostridium difficile]
          Length = 230

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L   I+  + SE+      + G++G++  K  E+  +ILD+ +  + GFE
Sbjct: 3   KVLIIDDDKELCALIKRSVLSEDIEADFCNTGKEGLQKLKEREYQLVILDIMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G +Q L   G L ++++ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQDGISQQLEFDG-LKIDIENRSVTTENGTFELPPKEFDLLLYCAKNQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL    G   YI+T+ G GY
Sbjct: 181 EEVWREEYFYDDSNIMAIISRLRKKLEVNPGSPKYIQTIKGIGY 224


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 9/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  ++L +    D IILD+ +  + GFEV
Sbjct: 29  ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R +    P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 89  SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 147

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 148 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 207

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGY 219
             E + + +DV I +LR++       K+Y   I TV G GY
Sbjct: 208 DYEGDERTVDVHIKRLRERFPE----KDYPFAIHTVRGLGY 244


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct]
          Length = 231

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ ++G
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + V +  LR+KL +      ++ T  G GY LR++ 
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDSG 231


>gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 230

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 14/226 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +  +I++ LK+E + V+  + G   +E+ K  E    I+D+ +  + G  +
Sbjct: 5   ILVCDDERDILDAIKIYLKAEGYKVFTAEDGARALEIIKENEIHLAIIDIMMPVMDGITL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K + P+ +LS    + DK+ GL  GADDYI+KPFN  EL AR+ +++RR    
Sbjct: 65  IMKMR-EKTNIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRRYFSL 123

Query: 123 AQSLIVTGDL-----SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             S I TGDL     S+  D+K V V+    +LT  EY+++ LL+       +     N 
Sbjct: 124 GASDIKTGDLKIGRVSIFDDSKEVRVEDELANLTPYEYKILYLLAKNPGRVFSS----NE 179

Query: 178 LYDGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y+   E E     KII V I  LR K+       + I++V+G GY
Sbjct: 180 IYERVWEEEAIDVRKIISVHISHLRDKIEINPRKPDLIKSVYGMGY 225


>gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
 gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
           29220]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+ED++ +A ++  ML+ E F+V   + G   +E  +    DAIILD+GL DI GFE+
Sbjct: 6   IWLVEDEQGIADTLVYMLQQEGFSVEAFERGLPVLEKARQRCPDAIILDVGLPDISGFEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L     + P+  L+  S   D++ GL+ GADDY++KPF+  E+ AR+R ++RR +  
Sbjct: 66  CRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVQKF 125

Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A     T  GD  +N  A  +   G  + LT  E+ +++ L +      +++  ++ ++ 
Sbjct: 126 ASPASTTRCGDFELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLMDLVWA 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   + +D  I  LR KL       + I T  G GY LR
Sbjct: 186 DAQDTFDRTVDTHIKTLRAKLRAINPEISPINTHRGMGYSLR 227


>gi|295676005|ref|YP_003604529.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295435848|gb|ADG15018.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 232

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   VY  + G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRTALEGEGIAVYDAETGKQGLVEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR      PV +LS  +   +KV  L +GADDY++KPF   EL+ARIRA +RR R H
Sbjct: 68  IRELR-GWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRR-RNH 125

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G ++V+L  + V   G  IHLT  EY+++  L       LT    L  +
Sbjct: 126 GGANESPQVRFGAVTVDLALRQVTRDGAAIHLTPIEYRLLATLVRHAGRVLTHRQLLRDV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +          + +++  LR KL        +I T  G GY L
Sbjct: 186 WGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRL 228


>gi|254245705|ref|ZP_04939026.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870481|gb|EAY62197.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 261

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 16/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L    F V V   G+  +   + ++   +ILDL L ++ G E
Sbjct: 29  RVLLIEDDDRLAQLVREYLDGYEFAVTVVRRGDLAVAAVREHQPALVILDLMLPNLDGME 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-------EELVARIRA 114
           + R +R A  + PV IL+  + + D+V GL++GADDY++KP            L+ R + 
Sbjct: 89  ICRRIR-AFTNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 147

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  
Sbjct: 148 AAAEAPAVAPDALVFGELAISPPNRTVTWRGEPVELKTAEFNLLLILARAAGTVLSRDDI 207

Query: 175 LNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  L    +DG D    + +D  I KLR++  +A+   + I+T+WGRGY+   +A DE
Sbjct: 208 LKQLRGIEFDGLD----RSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDE 261


>gi|326330856|ref|ZP_08197157.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325951386|gb|EGD43425.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 222

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 125/227 (55%), Gaps = 17/227 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPGFE 61
           +L++ED + +A  +   L+ E ++V   D G+  +EL    YE + ++LDLGL D+ G E
Sbjct: 1   MLVVEDQEDIAAPLVRTLQREGYDVTWVDSGKKALELLAPPYEAELVLLDLGLPDMDGLE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A R       + IL+   +  D V GL +GADDY++KPF    L AR+RA++RRS G
Sbjct: 61  VCKAARDNGYEGGIMILTARDAEIDLVVGLDAGADDYLAKPFALAVLQARVRALLRRS-G 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH-------LTGKEYQMIELLSLRKNTTLTKEMF 174
             +          + DA  ++V  HR++       LTGKE+ ++ +L+  ++  ++++  
Sbjct: 120 PVEP-------GADDDALRIDVAAHRVYAGEREVTLTGKEFALLAVLAASRDKVVSRDRL 172

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  ++D       K +DV + +LR+KL  AAG +  +  V G G+ L
Sbjct: 173 MAEVWDENWYGSTKTLDVTVGRLRQKL-EAAGVQEKVVAVRGVGFRL 218


>gi|319902985|ref|YP_004162713.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
 gi|319418016|gb|ADV45127.1| two component transcriptional regulator, winged helix family
           [Bacteroides helcogenes P 36-108]
          Length = 225

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 121/230 (52%), Gaps = 13/230 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENF---NVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M++L+IED+K L+ SI   L +E++     +  D     +     YE+D I+LDL L   
Sbjct: 1   MKLLIIEDEKELSDSIVSYLSTESYLCEQAFTYDSARLKV---TDYEYDCILLDLMLPGG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR +R  K    V I+S   S++DKV GL+ GADDY++KPF+  EL  RI AI+R
Sbjct: 58  SGLDILRDIRNQKNPVGVIIISAKDSLDDKVSGLKIGADDYLAKPFHLPELSMRIYAIIR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R      + + +  + +NL  KTV V    + LT  EY+++  L   KN  ++K     H
Sbjct: 118 RKELSVSNTLQSNGIDINLLNKTVSVGRQEVILTRMEYELLLFLIGNKNRVVSKGSMAEH 177

Query: 178 LY----DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L     D  D  +   +   I  L+ KLS  AG  + I+ V+G GY   E
Sbjct: 178 LSGDMADMMDSHD--FVYTHIKNLKAKLSE-AGCTDCIKNVYGTGYKWSE 224


>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L      +L+   F+V     GED ++  +    + II D+ + ++ G++
Sbjct: 20  RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMDGYD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +LR A+   PV +++  +  EDK RG + GADDY++KP +  E++ R+ A++RRS+ 
Sbjct: 80  LVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKI 139

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S++  G   + LD  TV    H   L  KE+ ++  L    N   T++  ++ ++  
Sbjct: 140 NYSSILTIGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL 199

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + IDV I +LR +       +  I TV G GY
Sbjct: 200 DTNTEERTIDVHIKRLRTRFEKTEDFQ--IITVRGLGY 235


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ EEL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGAIQKLNFDG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|299832743|gb|ADJ56358.1| NisR [Lactococcus lactis subsp. lactis]
          Length = 228

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   ++  L+  N+ V +       +++  F  FD I+LD+ +++I G E
Sbjct: 3   KILIVDDDQEILKLMKTALEMRNYEVAMHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +ISTP+  +S   + ED + GL  G DDYI+KPF+ ++LVA++ A ++R   
Sbjct: 63  ICKRIR-REISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121

Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  ++ V        G ++  L+ + V V G  I LT +EY ++ELLS R +   T+E  
Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +YD       + I  +I ++R K   A    N I+TV G GY
Sbjct: 182 YDDVYDEYSNALFRSISEYIYQIRSKF--APYDINPIKTVRGLGY 224


>gi|291523701|emb|CBK89288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 231

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL++EDDK +   I+ +L+ ++++V +   G + +E  K  E F  +I+D+ +  + G 
Sbjct: 3   KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALE--KIDESFSLVIMDIMMPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E  R +R  + S P+  LS  S   DK+ GL+ G DDY++KPF+  EL+++++A++RR  
Sbjct: 61  ETCRRMR-ERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +R +    I T  L +  +   VE   + I LTGKEY++++LL    +   T 
Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 172 EMFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           EM    ++D       K  + V I  LR KL  A G    I T WGRGY
Sbjct: 180 EMIYEMVWDEAFTYNAKNTVMVHIKNLRNKLIKACGDA-CIHTEWGRGY 227


>gi|269963791|ref|ZP_06178108.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831471|gb|EEZ85613.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 256

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 25  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKTQYQQQPFDLLILDRGLPDGDGLDI 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 85  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 144

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 145 AEVKAADEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 204

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+H+++         +   I +LR KLS +    ++I+TVWG GY
Sbjct: 205 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGY 250


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVF 233


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E + V     G++ ++  +    D IILD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R +    P+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR+  
Sbjct: 63  VAKEIRKSS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTEN 121

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      + S +  GDL +  DA   + +G  + LT +E++++  L+      +T+
Sbjct: 122 IETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 12/225 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +  ++   L+ EN+ V     G+  +E  + + FD +ILDL L  + G  
Sbjct: 7   KILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-NVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EMF 174
              + +     G L++++    + +    + LT  E++++  L+       T+    E  
Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L + ++G +    + ID  +  LR KL +      ++ TV G GY
Sbjct: 186 LGYDFEGYE----RTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGY 226


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  +EL LK+ENF VY      D +   +  + D  ILD+ L +  GF++
Sbjct: 19  ILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETDGFQI 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + +
Sbjct: 79  CRKIR-EKYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKRY 137

Query: 123 ---AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              AQ    +   G L +N+      +    + LT  E+ ++ +L   +   ++ E    
Sbjct: 138 NVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEELFR 197

Query: 177 HLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  ++E   K    I V I  LR+K+ ++     YI+TVWG GY
Sbjct: 198 QIW--KEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGY 241


>gi|77359810|ref|YP_339385.1| transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874721|emb|CAI85942.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 234

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + + V+V   G++ +   K  +   I+LD+ L  + G  V
Sbjct: 7   ILLVEDDISLAQWVAEYLTEQGYCVHVCHRGDEVVGQVKTLKPQLILLDIMLPGLDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----R 118
            R LR +    P+ +L+      D+V GL+ GA DYI KP     L+ARI++ +R     
Sbjct: 67  CRELR-SFYQAPIIMLTARDDEMDEVIGLEVGASDYIMKPVRPRALLARIKSALRLTTQS 125

Query: 119 SRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S+ H Q S+I  G LS+N ++++V++    I+++  EY ++  L+      ++++     
Sbjct: 126 SQSHKQHSIINVGALSINSESRSVKLNDIDINISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                YDG D    + +DV I  LRKK ++       I+T+WGRGY+L   A
Sbjct: 186 TKGREYDGLD----RSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLLVATA 233


>gi|88859463|ref|ZP_01134103.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88818480|gb|EAR28295.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 244

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/242 (31%), Positives = 128/242 (52%), Gaps = 25/242 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  LA  IE  L +  FNV     G++ + L K    D ++LD  L  + GFEV
Sbjct: 9   LLLVEDDVELATWIEEYLSARGFNVTTCHRGDEAVTLIKNLNPDCVLLDGMLPGMDGFEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + +R   I+ P+ +++      D++ GL+ GADDYI+KP     L+ RI+ ++R+  R 
Sbjct: 69  CKTVRPDFIN-PIIMITARDEEIDEILGLEMGADDYITKPVRARVLLTRIKGLLRQQERF 127

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +  S            L+    LS+N   ++V + G  I L+  E+ ++  L+ R    +
Sbjct: 128 NPASEFPLSPPATSVHLLQFNGLSINELTRSVHLDGESIKLSSNEFDVLWFLASRAGEVV 187

Query: 170 TKEMFLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++  ++H     YDG D    + ID+ I ++RKKL+++      I+T+WG+GY+    A
Sbjct: 188 QRDDLVSHFRGFEYDGFD----RSIDLRISRIRKKLNDSPQEPFRIKTIWGKGYLF---A 240

Query: 226 KD 227
           KD
Sbjct: 241 KD 242


>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
 gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 234

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 21/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ L  + G  +
Sbjct: 7   VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVMLPGLDGVSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR  GH
Sbjct: 67  CRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRF-GH 124

Query: 123 A--------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A                ++  GDL V+ D   V   G  + LT  E +++   S    T 
Sbjct: 125 AGGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY L+
Sbjct: 185 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKI-----GQDRIETVRGFGYKLK 233


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++   L+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++  G+  ++  A ++   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL         I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|257057064|ref|YP_003134896.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586936|gb|ACU98069.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 225

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFDTAVVSDGSRALPALRELKPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCKAIR-AESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARLRRTES 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAETLTIGDLTIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGY 220


>gi|221234604|ref|YP_002517040.1| two-component response regulator kdpE [Caulobacter crescentus
           NA1000]
 gi|220963776|gb|ACL95132.1| two-component response regulator kdpE [Caulobacter crescentus
           NA1000]
          Length = 232

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   +   L +  +     D G++G+     +  DA++LDLGL D+ G +
Sbjct: 7   RILVIDDEPQIHRFLGPALDAAGYEALRADSGQEGLRGIALWSPDAVVLDLGLPDMDGKD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   R A    P+ ILS      +K+  L  GA+DY+ KPF   EL+AR+R  +R+S  
Sbjct: 67  VLEKAR-AFYEGPILILSARDREVEKIEALDRGANDYVEKPFGVGELLARLRVALRQSAA 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GD+ ++LD + V   G  + L+ KE++++  L+L     LT +  L  ++
Sbjct: 126 SKRPTGPLTFGDVIIDLDLRLVTKAGAAVKLSPKEFELLARLALSPGKVLTHKELLVGIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + + + VF+ +LR+KL + +     I T  G GY L+  A
Sbjct: 186 GASHADDTQYLRVFVGQLRQKLEDDSAHPRLILTEPGVGYRLQGAA 231


>gi|218133116|ref|ZP_03461920.1| hypothetical protein BACPEC_00978 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991989|gb|EEC57993.1| hypothetical protein BACPEC_00978 [Bacteroides pectinophilus ATCC
           43243]
          Length = 235

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +   +  ML++  + V +    E    +   Y  D I+LDLGL D  G  
Sbjct: 7   KILLVEDEDNIRKLVSTMLETSGYQVLMAQTCELAQIMYSSYVPDLILLDLGLPDKDGIY 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  +   PV ILS  +   D V  L  GA+DYI+KPF   EL+AR+RA +R S  
Sbjct: 67  FLKEVR-KESPVPVIILSARTEEHDIVGALDMGANDYITKPFGSSELLARVRAALRNSHQ 125

Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + I     V  D+ ++  A+ V ++G  + LT  EY ++ LLS      +T    + 
Sbjct: 126 MYAANIENEKFVLNDMVIDYSARQVFIKGEEVKLTQTEYNIVSLLSEHCGKMMTYSAIIK 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   DE  +K + V +  +RKKL    G + YI    G GY
Sbjct: 186 GIWGYPDEGSIKKLQVNMANIRKKLGAKPGVRGYIINELGVGY 228


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A    +   L +E + V   + GE G+ +      D I+LD  L  + G E+
Sbjct: 6   VLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHVSGIEI 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+      + P+ +LS  S   DKVRGL++GADDY+ KP+   EL+AR+R  +RR R
Sbjct: 66  CRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVR 125

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++T GD+ ++ D   V      + L   E++++     +    L++E  L+ ++
Sbjct: 126 PSKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRVW 185

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 186 -GRDIYVDTRTVDVHVGRLRKVLTQ-NGGDDPLRTVRGAGYAL 226


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++  F     + G++ +E       + I+LD+ L  + G E+
Sbjct: 2   IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLEL 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  L+ +  +   PV +L+   +  DKV+ L +GADDY++KPF   ELV+RI+A++RR++
Sbjct: 62  LSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRTQ 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q +IV GD+ +N     V   G  + LT KEY++++ L    N  +T++  L  
Sbjct: 122 KDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E + +DV +  LR+KL  +      IETV G GY + E
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGKSG---EKIETVRGVGYRMSE 224


>gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + H +  +L  + ++      G +   L +    D I+LDL L  + G E
Sbjct: 5   KILIVEDDTDINHLLHRILMQDGYDTIQAFSGTEAKLLLRLEAPDLILLDLMLPGMSGEE 64

Query: 62  VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++  +R    +  P+ +LS  + +E KV  L++GADDY++KPF  +E++AR+ A +RR +
Sbjct: 65  LIVTVREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYK 124

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A       +      L+++ D++  E+ G  + LT  EY ++ LL        ++E  
Sbjct: 125 IEAGKTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++ G    E   ++V +  LR+KLS A   + YI TVWG G+
Sbjct: 185 YEQVWKGGYYGEDNTVNVHVSNLRRKLSAADPEEEYIRTVWGIGF 229


>gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 257

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++    ++ D ++LD+ L    G E
Sbjct: 32  RVLVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVMLPGFDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 92  VCRRVQ-AQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 150

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A + +         G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 151 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 210

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 211 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 257


>gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 234

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ LA      L+     V     G  G+E      ++A++LDL L    G EV
Sbjct: 9   VLLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLMLPGKDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A+   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRAIVRR+RG 
Sbjct: 69  CRELR-ARSDVPVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRARGR 127

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +  G L V+  A+ V + G  I LTG E+ +++ L+ R    L++E  +    
Sbjct: 128 AGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMELAG 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E   + IDV + +LR+KL +       I+TV G GY+L
Sbjct: 188 GSAEEAFDRSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLL 229


>gi|34557856|ref|NP_907671.1| response regulator [Wolinella succinogenes DSM 1740]
 gi|34483574|emb|CAE10571.1| RESPONSE REGULATOR OMPR-CheY-like and winged-helix DNA-binding
           domain [Wolinella succinogenes]
          Length = 235

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R  LIEDD+ +   +   LK+     +   L ++GI       FD +ILD+ L  + G 
Sbjct: 10  IRAALIEDDRQMCEILTEYLKAYAIETHYFRLPDEGIRAIDQGGFDIVILDINLPQMEGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + L+  +   P+ I+S   S+ D+V GL+ GADDY+ KPF+  ELVARIRA +R+  
Sbjct: 70  EVCQILK-ERHKIPIIIISARGSVSDRVLGLELGADDYLPKPFDPRELVARIRAALRKES 128

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G     + +    G  +++ +A  ++  G  I  T  EY++  LL   +   LT++  ++
Sbjct: 129 GSTPLALGSKRSFGVFALDEEALEIDKGGEAIPFTKGEYEVFALLLKHEGKALTRDFIVD 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    R E   K +D  I ++R K+ +      YI++V G GY
Sbjct: 189 NTEALRWESVGKSVDTIIGRIRVKIGDDPKNPRYIKSVRGVGY 231


>gi|331694859|ref|YP_004331098.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949548|gb|AEA23245.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 228

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L +E   V     G   +       FDA++LD+ L  + G+ 
Sbjct: 3   RVLVVDDEPGVRTALHRGLTAEGMEVVAVGDGPSALRAALTGSFDAVVLDIILPGLSGYR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR A + TPV ++S      D+  GL  GAD Y+ KPF+   LVA+++A++RR   
Sbjct: 63  VLEHLRAAGVDTPVLLVSAKDGEVDQADGLDLGADGYLVKPFSFVVLVAQLKAMLRRRDA 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G     +  G L V+  A++    G+ + L+ +E+ ++  L+ R +T + K+  L  +
Sbjct: 123 TLGRTGQKVRLGGLVVDPAARSASYDGNAMELSPREFALLHALASRPDTAVAKDELLRLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +         +++V++  LR+KL +A G  + + TV G GY++   A
Sbjct: 183 WGDAQAASRNVVEVYVGYLRRKL-DAVGAGHLLRTVRGFGYLVGSGA 228


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 21/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR  G
Sbjct: 72  LCRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRF-G 129

Query: 122 HA--------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           HA                 +  GDL V+ +   V   G RI LT  E +++   S    T
Sbjct: 130 HAGGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGT 189

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY LR
Sbjct: 190 VLSRDRLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLR 239


>gi|269104253|ref|ZP_06156949.1| DNA-binding response regulator [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160893|gb|EEZ39390.1| DNA-binding response regulator [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED    A  I    + +   +     G  G+ L K   +D IILDL L  + G 
Sbjct: 1   MRILLVEDHHDTAGIIFDYFEIKGAVLDHAATGPRGLALAKEQHYDLIILDLMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR   I TPV +L+ M S ED + G Q+GADDY+ KPF+ E L AR++A+ RR  
Sbjct: 61  TVCRELRDYGIDTPVLMLTAMDSREDILAGFQNGADDYLVKPFDLEILEARVKALTRRRS 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A + +V G+LS+++   T   +  +  L    + ++ LL  R    +TK+  +  L+
Sbjct: 121 GMVASNTLVFGELSLDVKTHTAYRKSCKFALNPSLFTILRLLMTRAPQVVTKDELVTALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G DEP+  ++   + +LR  L +      YI+T+   GY L
Sbjct: 181 -GDDEPDSNVLRSHLYQLR-NLIDKPFEHAYIQTLPKVGYQL 220


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 10  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDGYG 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 70  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 128

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 129 VGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 188

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 189 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 237


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 12/223 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ +   +   L+   + V V   G +GI   +   +D I+LD+ L  I GF 
Sbjct: 3   KILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKIDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R  + + PV +++ +SS E++VRGL   ADDYI+KPF+   L+ +I A++RRS  
Sbjct: 63  VCELIR-KESNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSGR 121

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  Q LI   DL ++LD     V G  + LT +E++++  L   +   +T+E+ L 
Sbjct: 122 GAKAGENQKLIYR-DLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+        +++D  I  LR+KL      ++YIETV G GY
Sbjct: 181 KLWKYEFYGNDRVVDNHIKNLRRKLE-----RDYIETVKGIGY 218


>gi|297156677|gb|ADI06389.1| two-component regulator CutR [Streptomyces bingchenggensis BCW-1]
          Length = 217

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIAVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VALPPVLERAGIKLDPNRREVFRDGREVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL   A     I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPA----VIVTVPGSGY 215


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 19  KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 79  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 198 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGY 244


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ +    I   L++E F V   + G++ +   K    D I+LD  L  + G E+
Sbjct: 7   ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIEI 66

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L++  A  + PV +LS  S   DKVRGL++GADDY++KP++  EL+AR+++  RR+R
Sbjct: 67  CRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRRTR 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A    +  D  + LDA+T  V   G  I L   E++++     +      +E  L+ +
Sbjct: 127 PAAVGERLEYD-DIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDRV 185

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LRK L+   GG + I TV G GY L
Sbjct: 186 W-GRDIYVDTRTVDVHIGRLRKALT-VRGGDDPIRTVRGAGYAL 227


>gi|254391878|ref|ZP_05007072.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816204|ref|ZP_06774847.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444537|ref|ZP_08219271.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705559|gb|EDY51371.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328803|gb|EFG10446.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L L     +V V   GE G+   + Y  D ++LDL L  + G E
Sbjct: 3   RVLLIEDDPAVQKGVSLALGRRGHDVEVAARGETGLLALERYRPDLVLLDLMLPQMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R +K   P+ ILS      D V GL++GADDYI+KP     + AR++A++RR   
Sbjct: 63  VCRRIRESK-QVPIIILSARGDEIDMVVGLEAGADDYITKPAGGAIIEARMKAVLRRVAP 121

Query: 120 RGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              AQ  I        GDL+V+     V   G  + L   E +++  L+       +++ 
Sbjct: 122 AQDAQEAIPPAGAEHYGDLTVDRTTLVVTKHGAELALAPSELKLLLFLTAAPGQVYSRQQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  +++     +V+++D  + +LR K+ N      Y++TV G GY
Sbjct: 182 LLEQVWEYVFYGDVRLVDACVMRLRAKIENHPRRPVYVQTVRGFGY 227


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 15/225 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ + + I+  L+ E ++V+    G + IE       D +ILDL L D+ G E+
Sbjct: 8   ILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLPDLSGEEI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + +R+     P+ +L+    + D++ GL  GADDY+ KPF+ +ELVAR+ AI RR    
Sbjct: 68  CKKIRIES-QVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGED 126

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE----MF 174
             ++ I++    DL+V+L+   V  +G  I LT  EY+++ LLS       T+E      
Sbjct: 127 TVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREELVTKI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L + Y+G D    + ID  I  +R+K+ +      YI TV+G GY
Sbjct: 187 LGYDYEGYD----RTIDTHIKNIRQKIDDEQN--KYIVTVYGTGY 225


>gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 231

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    S PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-SVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PSHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 231

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 123/223 (55%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+K++   +   LK E + V     G + ++  + Y+   ++LDL L  I G++
Sbjct: 4   KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVINGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + L    I   + +L+    I DK+ GL+ GADDY++KPF+  EL+ARI++++RR   
Sbjct: 64  VCKRLEGKNIG--IIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLDK 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL++N   +TV ++   +  T  E+ ++ LL     T  ++E  LN
Sbjct: 122 TIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQILN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++       + +D  I ++RKKL N    ++ I+TV+G GY
Sbjct: 182 IIWNMDYAGGTRTVDTHIQRIRKKLGNNY--QDLIQTVYGIGY 222


>gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 121/217 (55%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK++ + +E  L+ + + +   + G + +   K    D +ILD+ L +  G  +
Sbjct: 2   IYVVEDDKSIRNLLEYALREKGYEMKSFEDGSEIVREVKDKPCDLLILDIMLPEKDGISI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + P+ +L+  S   DKV GL  GADDYI+KPF+  E ++R++A++RRS   
Sbjct: 62  LKEIRQFS-NLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRRSNKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   ++ +N   ++V+V+G ++ LT KE++M+ L        ++++ FL  ++   
Sbjct: 121 DTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            E E + +DV I  LR KL  +     YIETV   GY
Sbjct: 181 YEGETRTVDVHIASLRAKLKESG---KYIETVRNLGY 214


>gi|295836091|ref|ZP_06823024.1| transcriptional regulatory protein CutR [Streptomyces sp. SPB74]
 gi|302522351|ref|ZP_07274693.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318061268|ref|ZP_07979989.1| two-component response regulator [Streptomyces sp. SA3_actG]
 gi|318078625|ref|ZP_07985957.1| two-component response regulator [Streptomyces sp. SA3_actF]
 gi|197695183|gb|EDY42116.1| transcriptional regulatory protein CutR [Streptomyces sp. SPB74]
 gi|302431246|gb|EFL03062.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 217

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E  +  ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERVEVNDYDVLVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRRVVELGLPTRVLMLTASGDVSDRVEGLELGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + +   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREIFRDGREIQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL   A     I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKLGEPA----VIVTVPGSGY 215


>gi|196250488|ref|ZP_03149179.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196209978|gb|EDY04746.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 220

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKVLLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + IL+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VDICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q   VT    ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    +  +K ID  I  LRKKL +     + I+TV G GY
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKD-----DVIQTVRGVGY 216


>gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 237

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   I+L L  + F V     G   +EL   +  D IILD+ L D  G E
Sbjct: 5   KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + + LR  KI+ +P+  LS   +  DK+ GL  G DDYI+KPF+  ELVARI A +RR+R
Sbjct: 65  LCQNLR--KITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNR 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      S++    L+++    T+ V    + LT KE++++ LLS   N   +   
Sbjct: 123 ILTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +H++   +  + + + V I  LRKK+         I T+ G GY L   A + 
Sbjct: 183 LYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPES 237


>gi|16125842|ref|NP_420406.1| transcriptional regulator KdpE [Caulobacter crescentus CB15]
 gi|13422990|gb|AAK23574.1| transcriptional regulator KdpE [Caulobacter crescentus CB15]
          Length = 257

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   +   L +  +     D G++G+     +  DA++LDLGL D+ G +
Sbjct: 32  RILVIDDEPQIHRFLGPALDAAGYEALRADSGQEGLRGIALWSPDAVVLDLGLPDMDGKD 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   R A    P+ ILS      +K+  L  GA+DY+ KPF   EL+AR+R  +R+S  
Sbjct: 92  VLEKAR-AFYEGPILILSARDREVEKIEALDRGANDYVEKPFGVGELLARLRVALRQSAA 150

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GD+ ++LD + V   G  + L+ KE++++  L+L     LT +  L  ++
Sbjct: 151 SKRPTGPLTFGDVIIDLDLRLVTKAGAAVKLSPKEFELLARLALSPGKVLTHKELLVGIW 210

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + + + VF+ +LR+KL + +     I T  G GY L+  A
Sbjct: 211 GASHADDTQYLRVFVGQLRQKLEDDSAHPRLILTEPGVGYRLQGAA 256


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I++ L+ E+F +     G+  +E     ++D IILD+ + +  G E
Sbjct: 6   KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TPV +L+      ++V+G + GADDYI KPF+  E V R++A++RR   
Sbjct: 66  VCKELRKEK-DTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    +++++V   L+++ DA  V      + LT KEY+++  L+   +    +E 
Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGY 219
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGY 231


>gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2]
 gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
 gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
          Length = 230

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ ++G
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|326314873|ref|YP_004232545.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371709|gb|ADX43978.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 237

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 113/229 (49%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD---- 56
           MRIL++EDD  L   ++  L      V V     +     K   FDA++LDL L      
Sbjct: 1   MRILVVEDDAVLRGVMQRSLADAGHRVDVAATLAEADHFWKVQPFDAVLLDLNLPQDAAQ 60

Query: 57  -IP---GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
             P   G  VLRA R     TPV +L+     E+++ GL +GADDY+ KPF+  E+ AR+
Sbjct: 61  ASPVGSGLAVLRAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLAEVEARL 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA+VRR++G        G L ++  A+   + G    L  +E++++  L       ++K 
Sbjct: 121 RALVRRTQG-TDDRTSAGTLVLDRRARRFTLHGQPFELPAREFEVLWELMTPPGRVVSKR 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + L D  D      ++ FI +LRKKL  +  G   I T+ G GY+L
Sbjct: 180 SLSDKLSDFDDMLGDNALEAFISRLRKKLQGSGAG---IRTLRGLGYML 225


>gi|290956901|ref|YP_003488083.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260646427|emb|CBG69523.1| two-component response regulator [Streptomyces scabiei 87.22]
          Length = 217

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRRLVELGLPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  +
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR    
Sbjct: 67  CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  +
Sbjct: 127 LPGTPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 187 N-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V     GE+ +++      D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   I  P+  LS + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 88  CRRLRAESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 146

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           A           Q ++  G+L V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 ASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVPR 206

Query: 172 EMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +    +  L+ E + VY    G +G ++   ++ D IILDL +    G+E
Sbjct: 3   KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 63  LCGEIR-QQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I   DL +    + V V  + + LT KE++++ +++       ++   
Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL       ++I TVWG GY    N ++E+
Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRNES 236


>gi|316935037|ref|YP_004110019.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602751|gb|ADU45286.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL+ED+  +A ++   L++ +  V  V  LG     L     + AI+LD  L D  G
Sbjct: 1   MRVLLVEDEPEMATALAGALRNHDMVVDQVATLGLASEALID-DSYSAILLDRQLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  LR   + TP+ +L+    +  +V GL SGADDY+ KPF   EL+AR+RA++RR 
Sbjct: 60  LSLIPTLRAKGLMTPIIVLTARGDLAQRVAGLDSGADDYLGKPFAIAELMARLRAVLRRP 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ ++  G L  +   +   V G  ++L  +E  ++E L  R   T+ ++  ++ +Y
Sbjct: 120 SDLSEEILKLGRLCFDGAHRQASVAGVDLNLPRRELLVLEALLRRSGRTVARDALVHAVY 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              DE +   +D  I +LR+KL +A  G   I T+ G GY++
Sbjct: 180 GFEDEIQSNALDTHISRLRRKLIDADAGVE-IHTIRGIGYLI 220


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++  L+   + V V + G + + L     +D I+LD+ L  I G+ 
Sbjct: 3   RILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGYG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  +   P+ +L+ +S  ED+++GL    DDYI+KPF+   L+ +I A++RRS  
Sbjct: 63  VCELIR-KQSDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  G+L +N D+ T  V G    LT KE++++  L   +   LT++  L+ L
Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY-VLREN 224
           +      + +++D  I  LRKKL     G ++I+T+ G GY V +EN
Sbjct: 182 WRYDFYGDERVVDTHIKNLRKKL-----GIDFIQTIRGVGYKVDKEN 223


>gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille]
 gi|151283205|gb|ABR91615.1| two-component response regulator [Janthinobacterium sp. Marseille]
          Length = 239

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ +A  +   L++               +     +FD ++LDLGL D  G 
Sbjct: 20  MQVLVVEDDELIASGLAAGLQAHGMVAVCVTTAVSAEQAIYAADFDVMVLDLGLPDQDGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R  K+S PV +L+   +IE ++ GLQSGADDY+ KPF+  EL ARI A+VRRS+
Sbjct: 80  TLLKETRSRKLSLPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSK 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G L ++     V +    I L+ +E+ ++  L+      L      + ++ 
Sbjct: 140 GRATQEITAGPLRLDPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  +R+KL     G   IET  G G+ L
Sbjct: 200 EDIQISSNALNVHIHNIRRKL-----GAEAIETSRGLGFRL 235


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+++ F V   + GE+ + L      D I+LD  L ++ G EV
Sbjct: 8   VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA++RRSR
Sbjct: 68  CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 188 -GRDIYVDTRTVDVHIGRLRKALCQHGGG-DPLRTVRGAGYAL 228


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             S         +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|331698992|ref|YP_004335231.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953681|gb|AEA27378.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 218

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/217 (35%), Positives = 120/217 (55%), Gaps = 7/217 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A+A  +   L+ E ++V V D G   +E  +    D ++LDLGL  + G EV
Sbjct: 4   VLLAEDDAAIAEPLSRALQREGYHVDVADDGTAALEHVRSGGVDLLVLDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR+     PV +L+  +   D V GL +GADDY+ KPF   EL+AR+RA++RR    
Sbjct: 64  CRRLRLDFPDLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRL--- 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  G + + L  + V V G  + L  KE++++ +L LR    +T+E  L  +++  
Sbjct: 121 TPEMVEVGGVRMELSGRRVLVDGVEVGLANKEFELLRVLMLRAGQVVTREEILREVWNDP 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    K +D+ +  LR+K+    GG+  I TV G G+
Sbjct: 181 DLKTSKTLDMHMSWLRRKI----GGERRIATVRGVGF 213


>gi|313200852|ref|YP_004039510.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440168|gb|ADQ84274.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+LIED+  +   +   L+   F V+ T  G+ G+      + DAIILDLGL D+ G +V
Sbjct: 7   IILIEDEVQIQRFVHAALEDAGFTVHSTPSGKQGVIDTGTRKPDAIILDLGLPDMDGIDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R +R +  + P+ +LS  +    KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 67  IRQIR-SWSNVPMIVLSARTQEAQKVSALDAGADDYLTKPFGTAELLARIRAQLRRHSQA 125

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G+A  +S+   GD+ V+L  + V   G  + LT  E++++  L       +T+   L  +
Sbjct: 126 GNAAQESVFTMGDIRVDLVNRQVHRGGALVSLTPIEFRLLATLIRYAGRVVTQRQLLKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +          + +++  LR KL        Y+ T  G GY L  +A
Sbjct: 186 WGPSHIESGHYVRIYMGHLRHKLEADPAQPRYLLTETGVGYRLLADA 232


>gi|284044816|ref|YP_003395156.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283949037|gb|ADB51781.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 218

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   +   L+ E   V +T  G  G+   + + +D ++LD  L  + G 
Sbjct: 1   MRLLIVEDEERLGPLLARGLRREGCAVDLTQDGTTGLAFARIHTYDLVVLDRDLPGLHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   L+       + +L+   +++D+V GL  GADDY++KPF   EL+ARIRA+ RR  
Sbjct: 61  VLCSELQQLDPIPRILMLTASGTVDDRVEGLGLGADDYLAKPFAFRELIARIRALTRRPL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+V GDL+++   +TV   G  + L  +E  ++E L       L+ E  L   +D
Sbjct: 121 QVTPTLLVRGDLTLDQARRTVTRGGRVVQLRPRELAVLEELLRADGAPLSAEQLLARAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    +   + +LRK L    G  + I+T+ G GYV+
Sbjct: 181 ANADPFSNPVRQTVQRLRKAL----GEPSPIQTIPGVGYVV 217


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L     +    +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + I   D      + ++   + V V    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  + S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIR-KEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGAIQKLNFNG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V   + G++G+   +    D I+LD  + ++ G EV
Sbjct: 7   VLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIEV 66

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L++     S P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 67  CRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVR 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++T +  + LDA+T  V    + + L   E++++     +     +++M L+ +
Sbjct: 127 PATVGQVLTYE-DIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRV 185

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 186 W-GRDIYVDTRTVDVHVGRLRKVLTQ-HGGSDPVRTVRGAGYAL 227


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   +   L+   F V     G   +E  + +  D +ILD+ L  + G  V
Sbjct: 6   ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    +  + +L+  +   D+V GL++GADDY++KPF   ELVAR+RA++RR R  
Sbjct: 66  CRRLRTFSDAY-ILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRHT 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SLI  G L ++  A TV + G  + LT  EY ++ +++       ++   L+ +
Sbjct: 125 EVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDRI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      +  +++V I  LRKKL +      YI TV G GY
Sbjct: 185 WGHDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGY 225


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ ++  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 297

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R +++ED+  LA  +   L+   + V +   G   ++L +  + D +ILDLGL  I G 
Sbjct: 64  LRAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGI 123

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR       V +L+  S   D + GL  GADDY++KPF+  EL+AR++AI+RR R
Sbjct: 124 EVCRRLRTFS-DCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPR 182

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A +++  G LS++++A+ V ++   + LT  E+ ++  L+ R     ++
Sbjct: 183 PKTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSR 242

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++ ++      +  ++DV I  LR+KL + A    Y+ TV G GY
Sbjct: 243 RQLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGY 290


>gi|70733782|ref|YP_257422.1| osmolarity response regulator [Pseudomonas fluorescens Pf-5]
 gi|68348081|gb|AAY95687.1| DNA-binding response regulator OmpR [Pseudomonas fluorescens Pf-5]
          Length = 246

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRSANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQSA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G+ +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELK-RGNEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 227

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ EDD  +   +  ML  E ++V + D G+  +   +  + D IILD+ + ++ G+
Sbjct: 1   MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V + +R     TPV  LS      DKV GL+ GADDYI+KPF   E+ ARI+ I RR  
Sbjct: 61  SVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCL 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +       + GDL++       + Q   I L+ +E +++  L   KN  +T++M L+
Sbjct: 121 KAKQNSPDQSFIFGDLTIYPMELCAKRQQQTIELSLREIKILSCLHRYKNQIVTRDMLLD 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++     P  + +D  I KLRK + +       I+T+ G GY  +E
Sbjct: 181 WVWGVDHLPNSRTLDQHISKLRKMIESDPNTPLLIKTIHGYGYRYQE 227


>gi|85060158|ref|YP_455860.1| DNA-binding transcriptional regulator CpxR [Sodalis glossinidius
           str. 'morsitans']
 gi|84780678|dbj|BAE75455.1| two-component response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 232

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 14/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +          ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVQVAHDGEQALSQLDSSIDLLLLDVM-MPRKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQQ-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS-- 118

Query: 122 HAQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           H      TG+          L +N   +     G  + LTG E+ ++ LL+      +++
Sbjct: 119 HWTEQQQTGEAGTPSLEVDFLRLNPGRQEATFDGTPLELTGTEFTLLYLLAQHLGQVVSR 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 179 EHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 125/229 (54%), Gaps = 18/229 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-------LTGKEYQMIELLSLRKNTTLTKEM 173
             +  L +  +  + LD +T     H++H       L   E++++     +     ++E 
Sbjct: 129 PSSVGLTLEFE-DIRLDPET-----HKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQ 182

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++ GRD   + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 183 LLDRVW-GRDIYVDSRTVDVHVGRLRKALC-LHGGEDPVRTVRGAGYAL 229


>gi|313891608|ref|ZP_07825215.1| putative response regulator ArlR [Dialister microaerophilus UPII
           345-E]
 gi|313119886|gb|EFR43071.1| putative response regulator ArlR [Dialister microaerophilus UPII
           345-E]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IE D  +AH I+  L+  +F       GE  ++L    + D I+LD    DI G ++
Sbjct: 5   VLIIEKDINVAHFIQGKLEEADFTCLADYSGEAAVDLAGQKQVDVIVLDSDSLDIEGSKL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R    S P+ ++S  + +E KV+  +SG DDY+ KP+  +EL+ARIRA++RR   H
Sbjct: 65  ISDVRAVS-SLPIVVISADADVERKVQLFESGVDDYLVKPYATKELIARIRALLRR---H 120

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +  IV        DL +  +   V +  + I LT KE+ ++  L   KN  L ++  + 
Sbjct: 121 KEPQIVVDPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +  I+DV+I  +R K+ +   GK Y+ TV G GYV+R+
Sbjct: 181 KVWGYEYAGKTNIVDVYIRYIRSKI-DEKFGKKYVHTVRGIGYVVRD 226


>gi|251778175|ref|ZP_04821095.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082490|gb|EES48380.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 227

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL+ED+  ++++I +    E F++     G D I+    Y +D +ILDL L ++ G 
Sbjct: 2   ISILLVEDNIEISNNI-VEYFGEEFDIKAVYDGSDAIQYLDTYSYDIVILDLMLPEVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
            VL  +    ++T V IL+    + DK++    GA+DY++KPF  EEL ARI AI++   
Sbjct: 61  SVLSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    +++   ++ +++  K V +    + L  K Y+++E L + K   L KE   +++ 
Sbjct: 121 KIKKSNILEFKNMQIDMKVKKVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNIC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +II+V+I +LRK+LS     K Y+ T  G GY+L E+
Sbjct: 181 GYNSDAATEIIEVYISRLRKQLSKYNYDK-YLVTKRGMGYLLDES 224


>gi|261368233|ref|ZP_05981116.1| KDP operon transcriptional regulatory protein KdpE [Subdoligranulum
           variabile DSM 15176]
 gi|282569742|gb|EFB75277.1| KDP operon transcriptional regulatory protein KdpE [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +   LK+ ++     D GE  +        D ++LDLGL D+ G EV
Sbjct: 6   ILVVEDDPPIRNLMTTTLKTHDYRYLTADCGEAALRQAATSAPDIMLLDLGLPDLDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +R +R +    P+ ++S  S   DK+  L SGADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRRVR-SWSDMPIIVISARSEDADKIEALDSGADDYLTKPFSVEELLARLRVTQRRLAAM 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +   G L+++  A    + G  +HLT  EY+++ L++      LT       ++
Sbjct: 125 NAGGSPVFTNGQLTIDFAAGCAYLAGQELHLTPIEYKLLCLMARNCGKVLTHTYITQKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E +V  + VF+  LRKKL +A G   YI+T  G GY
Sbjct: 185 GTSWENDVASLRVFMATLRKKLESAPGSPQYIQTHIGVGY 224


>gi|70730512|ref|YP_260253.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344811|gb|AAY92417.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ L +   ++ +ILD+ L    G+
Sbjct: 1   MRILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  L+       V +L+    +EDKV+GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  QVLEQLQ-GNYPARVMMLTARGRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSE 119

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  ++   DL ++           RI LT KE+ ++ +L       LT+   ++ ++
Sbjct: 120 VIVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHVLMRHSGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ +A+  K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSISRLRGKIDDASDVK-LIHTLRGVGYVL 220


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + L++E + V   + G   +EL +  + D IILD+ + ++ G E 
Sbjct: 6   IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ +LS  +   DK+ GL +GADDY++KPFN  EL+AR+++ +RR +  
Sbjct: 66  CTKIREEK-NMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124

Query: 121 ----GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               G+    I+  D L++N     V+V   ++ LT +E+ ++ELL+  K    + E   
Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V I KLR+K+        Y++TVWG GY
Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGY 228


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++EDD+ L   +   L++E + V V   G++     +    D ++LD  +  I G E
Sbjct: 5   KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L++   +   P+ +L+      D+VRGL +GADDY+ KPF+  E +AR+RA++RR+
Sbjct: 65  LCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRA 124

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    S ++  GD+ ++ +A  V  + + IHL   E++++E +        ++   L+++
Sbjct: 125 KPEVLSTVLKVGDIVLDREAHRVYRRKNEIHLGPTEFRLLEFMMQHPGRVFSRSQLLDNV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N     + I T+ G GY +REN
Sbjct: 185 WGETIYIDERTVDVHVGRLRKAV-NQGRMPDVIRTIRGAGYAIREN 229


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 132/229 (57%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
           +IL+++D+KA+   I++ L  E + V     GE+ +   K +E   D I+LD+ L    G
Sbjct: 4   KILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAV--AKSFESYPDLIVLDIMLPKKNG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V + ++  K+ TP+ +L+  + I DKV GL+ GADDY++KPF+  EL+ARI+A +RR+
Sbjct: 62  YDVCKEIQ-QKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRA 120

Query: 120 R----GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +       QS  I+ G L +  D + V++  H IHLT KE+ ++ LL+        ++  
Sbjct: 121 KKITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      + + +D+ I ++R+K+         I+TV+G GY +R+
Sbjct: 181 LKEIWGYDYYGDTRTVDMHIQRIRRKID--IHPNKLIQTVFGIGYKMRK 227


>gi|308183758|ref|YP_003927890.1| KDP operon transcriptional regulatory protein kdpE [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308047684|gb|ADO00227.1| KDP operon transcriptional regulatory protein kdpE [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  I++ L+S ++   +   G   ++    ++ D ++LDL L D+ G +
Sbjct: 4   RILIVEDDPEVARLIQMTLRSADYKYGIARNGNKTLQFIPIFQPDVLLLDLMLPDMDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++ +R A  + P+ ++S      DKV+ L  GADDY++KPF+ +EL+ARIR  +RR+  
Sbjct: 64  IIKQIRAANNNIPIIVISARDEDADKVQALDLGADDYLTKPFSIDELLARIRVSLRRTNI 123

Query: 121 --GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + ++ I     G+L++N D++TV+V  + IHLT  EY+++ +L+   +  LT    L
Sbjct: 124 IYNNGKTNINNYCNGELTINFDSQTVKVNQNEIHLTPIEYKVLIILAENTSRVLTHRYLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V I  LRKK+        YI+T  G GY
Sbjct: 184 KEVWGTESVEDTSSLRVTIATLRKKIE-VNTQNQYIKTHIGVGY 226


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +A  + L +K E ++  +   G+  ++  + +  D  ILD+ +  + G+EV
Sbjct: 6   ILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGLDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + P+  LS  +S  DK+ GL  GADDY++KPFN  ELVAR+ A +RR +  
Sbjct: 66  TRLIR-EQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQL 124

Query: 123 AQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q  +          G L +  + +TV + G  I LT KE+ ++ LL+       + +  
Sbjct: 125 NQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVFSADNI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++          + V I  LRKKL        +I+TVWG GY
Sbjct: 185 FEMVWGEAYYEGSNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGY 229


>gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
 gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  I+ ML+   +        +D  E+    + D I+LD+ L D  GF  
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPDGTGFSF 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR      P+   S  +S +DKV GL  G DDYI+KP++ +EL++RIR+I+RR+ G 
Sbjct: 71  CKELRHTS-QVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGV 129

Query: 122 ---HAQSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               ++ L +  D   + +N  A+TV      + +  KE+ ++  ++  +   LTKE  +
Sbjct: 130 DDNKSEMLTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIM 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++    + E   + V +  LR+KL         I TVWG GYVL
Sbjct: 190 SAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235


>gi|89901178|ref|YP_523649.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89345915|gb|ABD70118.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 125/238 (52%), Gaps = 22/238 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVY--VTDLGEDGI----ELCKFYEFDAIILDLGL 54
           M++LLIED+  L H++     +++F +     D   DG     +L K + +D +ILDL L
Sbjct: 1   MKVLLIEDNLQLVHTL-----TQSFGMLGIAVDGQSDGALADADLHK-HAYDVVILDLAL 54

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + GFE+LR LR    + PV IL+    I D+V+GL +GADDY+ KPF+  EL AR+RA
Sbjct: 55  PKMDGFEILRRLRERGDTVPVLILTASGDIYDRVQGLNAGADDYLPKPFDLTELEARLRA 114

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEM 173
           + RRS G A S++  G L  +  ++   V   +   L  +E+ ++E+L       + K +
Sbjct: 115 LYRRSLGTAHSVLRVGRLEFDTVSRRFSVGARQFDDLPPREHDLLEILIAHAGRPVNKNV 174

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
               L           +++++ +LR++L    G    I T+ G GYVL      E C+
Sbjct: 175 MATRLCTSDVVLSHDALEIYVHRLRRRLD---GSGAAIRTLRGLGYVL------EACD 223


>gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
 gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
           3_1_45B]
          Length = 241

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D++ L   I   LK E +       G + I+    +  D ++LD+ +  + GFE
Sbjct: 4   RILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGRFSPDLVVLDVMMPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR A  S PV +L+  + ++D++RGL  GADDY+ KPF  +EL ARI A++RRSR 
Sbjct: 64  VLEHLRHAS-SIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVLRRSRP 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I    L  NL   +    G  + L   EYQ++  L       L+    L
Sbjct: 123 SQPAPKEPEETIAFASLKCNLAQHSASANGIELPLQNLEYQLLICLVKAGERVLSYNYLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + L++  D  ++  + V + KLR K+  A  G + I TV G GY L   A +  
Sbjct: 183 SSLWED-DRGDIATLRVTVGKLRGKIKQAL-GYDPILTVHGIGYRLHTPANNHP 234


>gi|239908419|ref|YP_002955161.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239798286|dbj|BAH77275.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 225

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++EDD   A  +   LK   + V +V D G + +       +DA ++D  L  + G
Sbjct: 1   MRVLIVEDDLDAAAYLVKGLKESGYVVDHVAD-GREALYRVAAETYDACVVDRMLPGVDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ +R A  + PV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+ A++RR 
Sbjct: 60  LTIVKTMRSAGNAAPVLILSALGDVDDRVKGLKAGGDDYLVKPYAFAELLARLEALLRRG 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A  +++   DL ++L  +TV   G  I L  KE+ ++E L       +T+ M L ++
Sbjct: 120 RSDAPDTMLKVADLEMDLVGRTVRRAGRPIELKPKEFALLEYLMRHAGHVVTRTMLLENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV + +LR+K+ +    K  + T+ G GY LR++
Sbjct: 180 WDYSFDPQTNVIDVHVSRLRQKI-DKGHDKPLLSTIRGAGYSLRDS 224


>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
 gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
          Length = 239

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSQEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L+ E F+     LG   +E  K    D IILD+GL DI GFE 
Sbjct: 4   ILIVEDEAAIADTLVFALQGEGFDTTWLSLGAAALEHQKSAPADLIILDVGLPDISGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      PV  L+      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R    
Sbjct: 64  CKNLRRFS-DVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRVAPR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +   T    V+ D   +  +G  ++LT  E++++  L  +     ++E  L+ L    
Sbjct: 123 PAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSREQLLDALGVAS 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    + ID  I  +R KL         I+T  G GY
Sbjct: 183 DAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGY 219


>gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 232

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58
           RIL+I+DD  L   ++  +   N    +   G+ G+ L    E D+   IILD+ L ++ 
Sbjct: 4   RILIIDDDVELCSLVKKCVSQVNLETDMAYNGQTGL-LQVMNENDSYSLIILDVMLPNMD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+VL  +R    + PV +L+   S  DKV GL  GADDY++KPF+  EL+AR+++++RR
Sbjct: 63  GFQVLSEIRKYS-NVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLIRR 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                SR     LI  G + ++ + +TV V+   I LTGKE+ ++  L+  K    TK+ 
Sbjct: 122 YTTFNSRDSVSILIFKG-IVIDKEIRTVHVEDKLIDLTGKEFDLLVFLASNKGRVFTKKQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++     +   I  FI KLRKK+   +    YI TV G GY   + A
Sbjct: 181 IYTQVWNDDYSFDDNNIMSFISKLRKKIEPNSEQPFYILTVHGVGYRFNKEA 232


>gi|255525139|ref|ZP_05392083.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188106|ref|ZP_06856498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511193|gb|EET87489.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047232|gb|EFG86674.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 235

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           R+L+I+DDK L   ++  ++ EN +  +   G +GI L    +       +ILD+ + DI
Sbjct: 3   RVLIIDDDKELCTLMKKCVEKENLSAIIAHGGIEGIRLVDENKSKGSLSLVILDVMMPDI 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL+ +R    + PV +L+  S  +DKV GL+ GADDY++KPF+  EL+AR+ +++R
Sbjct: 63  NGFQVLKIIRETS-NIPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSISELMARVNSLIR 121

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R      +      LI    + ++   + V V    + LTGKE+ ++  L+  K    TK
Sbjct: 122 RYTTLNPTFPMETDLIALQGMLIDKVNRIVSVNDILVELTGKEFDLLSFLASNKGRVFTK 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 182 KQIYTQVWEDEYSFDDSNIMSFISKLRKKIEPDPDRPFYILTVRGVGYRFNKEA 235


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  111 bits (278), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSSEETIIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L +E + V+     +D +E  K    D  +LD+ + +I GFE
Sbjct: 4   KILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEISGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   PV +L+      DK++GL  GADDYI+KPFN  ELVAR++A +RR + 
Sbjct: 64  ICRIIR-EKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  S     +I    L ++ D+    +    ++LT  E+ ++  L   +   +T E    
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 183 AVWKKKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD ++A      L+   F V +   G + +   K  EFD +ILD+ L  I GF 
Sbjct: 3   KILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIMLPKIDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR+++  K   P+ I+S      DK++G   GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 63  ILRSIQDTK-DIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKNYER 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S   + ++++ G L +  D++ V V    + L  KE+ ++  +S   N   ++E
Sbjct: 122 IKNKFDSNKKSDTILIRG-LEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V I ++R+K   +     YIETVWG GY ++
Sbjct: 181 ELFEKVWGLDAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRIK 230


>gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064]
          Length = 175

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 105/173 (60%), Gaps = 6/173 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++ + ++  ML+ E F V V   G +G++  +    D ++LDL L  +PG EV
Sbjct: 1   MLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR RG 
Sbjct: 61  CRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR-RGE 118

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            + +    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+
Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTR 171


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             S         +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|293393586|ref|ZP_06637896.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM
           4582]
 gi|291423921|gb|EFE97140.1| transcriptional regulatory protein CpxR [Serratia odorifera DSM
           4582]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F + V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFTIVVAHDGEQALSLLDSSIDLLLLDIM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q         +L V G L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQQNVDTSAPTLDVDG-LQLNPGRQEASFDGQVLDLTGTEFTLLYLLAQHLGQVVSRE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 180 LLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ ++   +E  L    ++V     GE+ + + K    + ++LDL +  + G+ 
Sbjct: 5   KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +S + D++ GL+ GADDYI KPF+ +EL ARIR+++RR   
Sbjct: 65  VCQELR-KESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +       +I  G L ++++   V     R+ LTG E+ ++ELL  +     ++   
Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183

Query: 175 LNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  +  Y    + + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 233


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L  E + V     G++ ++  +  + D ++LD+ L    G EV
Sbjct: 6   ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKRDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 66  CREVR-KKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNVP 124

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           AQ        + IV G L++  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 125 AQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV I +LR+K+ +      +I T  G GY LR
Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYLR 232


>gi|256380367|ref|YP_003104027.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924670|gb|ACU40181.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 3/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A+A  +   L+ E + V+V   G   +E  +    D ++LDLGL  + G EV
Sbjct: 4   VLLAEDDPAIAEPLSRALQREGYQVHVVGDGPGALEAAEHGGIDLLVLDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+  S   D V GL +GADDY++KPF   EL+ARIRA++RR    
Sbjct: 64  CRRLRAGGRGVPVLMLTARSDEVDFVVGLDAGADDYVAKPFRLAELMARIRALLRRR--A 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++L V G + ++L A+ V V G  + L  KE++++ +L  R    + ++  L+ +++  
Sbjct: 122 PETLEVNG-VRMDLAARRVTVDGQEVQLANKEFELLRVLIQRAGQVVNRDEILSEVWNDP 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    K +D+ +  LR+KL +    +  I TV G G+
Sbjct: 181 ELKSSKTLDMHMSWLRRKLGDVRSVERRIATVRGVGF 217


>gi|116049749|ref|YP_791444.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389810|ref|ZP_06879285.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313110495|ref|ZP_07796380.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584970|gb|ABJ10985.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882882|gb|EFQ41476.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 235

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R VA +  P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR  
Sbjct: 68  VCREIRRVANL--PILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHA 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN +
Sbjct: 126 PLPASPESLTFGKLNIDRRRREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQI 185

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +DG +    + +DV I KLR KL +       I+TVWG+GY+ 
Sbjct: 186 RGIGFDGLN----RSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLF 228


>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
 gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
 gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
 gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
 gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V  QG  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-EKPLLHTVHGVGYRLAEG 223


>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/219 (35%), Positives = 112/219 (51%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+   +EL L  +   V     GEDG+ L K    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                  G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 NSDSSAYGGLVIDRSAMTVTKDGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSAPTLIRTVRGVGYRL 224


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L+   +   V   G D +++ K      I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYD 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R   A    PV +++      DKV GL+ GADDY++KPF+  ELVAR++A++RR+
Sbjct: 65  VCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRT 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V G +S++ D   V   G ++ LT KE++++++L   +   +T++  L+ +
Sbjct: 125 ALKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + +DV I  LR+K+ +      YIET+ G GY
Sbjct: 185 WGYEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGY 225


>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
 gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
 gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  +
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR    
Sbjct: 67  CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  +
Sbjct: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 187 N-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
 gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43]
          Length = 218

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IEDD+A+++ I++ L    +       G +   L K   FD I++D+ L  + GF
Sbjct: 3   INVLIIEDDEAISNLIKINLSMVGYQSKQLFDGLEAFNLLKEEPFDLILMDIMLPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  ++  ++ PV  L+  + + DKV GL+SGA+DYI KPF   EL+ARI  ++RR  
Sbjct: 63  ELMK--KIKDLNIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I   +L +  + + ++     I LT KE++++ LL   KN  L++E  L  ++ 
Sbjct: 121 KNSNC-IEFENLKIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I KLRKKL  A      I+TV+  GY L E
Sbjct: 180 YEYMGETRTIDNHIQKLRKKLDIADN----IKTVYKIGYRLEE 218


>gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 119/217 (54%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD AL   ++   +++ + V +   G++G+        D ++LD+ L  + G+E+
Sbjct: 6   VLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMNGYEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R  +   P+ +L+     ED +RGL+ GADDY++KPF+  EL+AR  A +RR +GH
Sbjct: 66  CRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFLRRRKGH 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A ++   GD  ++L A  +   G  I LT KE++++E  + R    LT++  L+ ++   
Sbjct: 126 AATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGND 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + +D  +  LR K+         I+T+   GY
Sbjct: 186 IVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGY 222


>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GF 
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFG 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ ++    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKGIK-KLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVVEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +  +I+  L+  ++ V     G + +++    +FD I+LD+ +  I G E
Sbjct: 5   KILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMIN-DDFDLIVLDIMMEGIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  ++  P+  +S  +  EDKV+ L  G DDYI+KPF+ +EL ARI + +RR   
Sbjct: 64  LCTIIR-DRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREER 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R + + L+ + +++++L A  V  +G ++ LT KEY++++LL L K    +KE     +
Sbjct: 123 IRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + ++  +   I  +RKK+       +YI+T++G GY
Sbjct: 183 WGIDSDSQLDTVTESIKNIRKKIKAVDPETSYIQTLYGLGY 223


>gi|24375955|ref|NP_719998.1| transcriptional regulatory protein CpxR [Shewanella oneidensis
           MR-1]
 gi|24350945|gb|AAN57442.1|AE015880_1 transcriptional regulatory protein CpxR [Shewanella oneidensis
           MR-1]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F + +   G+ G+EL    ++D I+LD+ L  + GFE
Sbjct: 3   RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALATDYDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  K  TPV +L+      D+V GL+ GADDY+ KPFN  EL+ARIRAI+RRS  
Sbjct: 63  VLRALRQHK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSHL 121

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ +  T     GDL ++   +        I LTG E+ ++  L+L     + KE  LN
Sbjct: 122 TAQEIHATPAQEFGDLRLDPSRQEAYCNEQLIILTGTEFTLLHTLALHAGELMNKEE-LN 180

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +  G+   P  + +D+ +  LRKKL   + G+  ++T+ G+GY+
Sbjct: 181 EIVLGKKLMPFDRSLDMHLSNLRKKLPERSDGRPRVKTIRGKGYI 225


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR    ++  PV +L+ +S  +DKV G  +GADDY++KPF  EEL+AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L+ + F V     G++ +        D ++LD  L  + G EV
Sbjct: 13  ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPALSGLEV 72

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +++  +  +D VR L +GADDYI+KPF  + L+ARIRA++RRS 
Sbjct: 73  CRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRRSG 132

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +  +   D++++ DA  V   G  +HL   EY+++E          ++E  L+ ++
Sbjct: 133 GVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVW 192

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            GRD   E + +DV I +LRK + N  G  + I TV   GY L
Sbjct: 193 -GRDIHVEPRTVDVHIRRLRKAV-NGEGEVDIIRTVRSAGYAL 233


>gi|254555419|ref|YP_003061836.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308179421|ref|YP_003923549.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044346|gb|ACT61139.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308044912|gb|ADN97455.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 234

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++ED+ +L+  +   L+ E+FNV V   G   +E  + +  E   I+LD  L  + G 
Sbjct: 5   ILIVEDEGSLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I RR  
Sbjct: 65  EVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   V     + LD K   V      + LT +EY +++      +   T++  L+ +
Sbjct: 124 NQVEPNQVYQLDDIQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      +  ++DV++  LR K++   G    I+TV G GY LRE   D
Sbjct: 184 WGADFLGQQNVVDVYVGYLRNKIT-TTGASPLIQTVRGVGYKLREPMSD 231


>gi|229060229|ref|ZP_04197598.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228719111|gb|EEL70723.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 108/207 (52%), Gaps = 8/207 (3%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L++E +N++    G++ I++   YE D +ILD+ +    G EV + +R    + P+ +LS
Sbjct: 22  LRNEGYNIFKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENN-TVPILMLS 80

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LIVTGDL 132
             +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS     +       +I    +
Sbjct: 81  AKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNTATQKKDDGIIRIRAV 140

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++    TV+V    I LT  E+ ++ LL+       + E     +++       K + V
Sbjct: 141 EIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGSNKTVMV 200

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGY 219
            I  LR KL     G+ +I TVWG GY
Sbjct: 201 HISNLRDKLETVMNGEKFIHTVWGVGY 227


>gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK +       LK+  + +      +D        + D  +LD+ L D  G E+
Sbjct: 4   IYVVEDDKNIREIESFALKNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVMLPDEDGLEI 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +++   P+ +++  ++  DKV+GL  GADDY++KPF   EL++R++A++RRS+
Sbjct: 64  VRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLRRSQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I  G ++++ + + V   G    LT KEY+++ LL       +++++ LN ++
Sbjct: 124 IIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILNRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E + ID+ I  LRKKL  A      I+TV   GYV  EN
Sbjct: 184 GTDYEGESRTIDMHIKTLRKKLKEAGA---MIQTVRNVGYVFNEN 225


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K Y+ D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 119 -SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +E  L+ E F +     G++ ++  K      ++LD  L ++ G +V
Sbjct: 5   LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMSGIDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR       + +++  +   DK+ GL+ GADDYI+KPF+  EL ARIR+++RR  G 
Sbjct: 65  CRELRKTS-HVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEGQ 123

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+  GDL+++     V  +G  I LT  E++++  L+ +     ++   L  +++
Sbjct: 124 DNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIFE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +      YI+TV+G GY   E 
Sbjct: 184 DDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRFGEQ 227


>gi|146293077|ref|YP_001183501.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564767|gb|ABP75702.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 222

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ LA  +   L+  ++ V     G   ++  +   FD +ILDLGL D    
Sbjct: 1   MRILLVEDDQLLAQGLVTALERLHYRVEHCISGNQALQAAQNSLFDVMILDLGLPDGLAL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR +  + P+ +L+    +E K+  L +GADDY+ KP +  E+ AR+R + RR +
Sbjct: 61  PVIKTLRASNQALPILVLTAWDHLETKIDVLDAGADDYVLKPCDVREIEARLRVVHRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF--LNHL 178
                L+++ +L++++ +     +   +HLT +E+ +++ L L     L+K+    +N  
Sbjct: 121 QRQHDLLISNELTLDIQSHKCCFRNKGVHLTTREFLLLKELMLHPGKILSKQHLEEINTG 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++G +E     ++V I  +RKK +        I+TV G GY+L+ +
Sbjct: 181 WNGDNEGNS--LEVHIHNIRKKTATY-----IIKTVRGFGYMLKSH 219


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L+   + V     GE  IE  K      +ILD+ +    G EV
Sbjct: 7   VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR    + PV +L+      D++ GL+ GADDYISKPFN  EL+ARI+A++RR++G 
Sbjct: 67  LRDLR-PHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125

Query: 123 AQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +G ++V     ++  + +E++G  + L+  E+++++ L       +T++  +  
Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G+D     + IDV I KLR         ++ I+TVWG GY+ 
Sbjct: 186 VW-GKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229


>gi|296102592|ref|YP_003612738.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057051|gb|ADF61789.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  L+ EN++V VT  G  G+E+ + ++ D ++LD+ L  + G E
Sbjct: 5   RVLIIEDDADAAGVLEAYLRRENYDVNVTGDGLAGLEMAQRWKPDLVLLDVMLPGLNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL +LR  K   PV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RRS  
Sbjct: 65  VLASLR-RKSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNK 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +   + ++    L V++ A    +         + LT  E+ ++  L    +   +++  
Sbjct: 124 NTREEEILRWQTLEVDVTAIVASIINDDNTPRVLDLTPTEFSLLTTLMRSPSRPFSRQYL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L H     +  E +++D  I  LRKKL  AAG    +  V G GY  R+
Sbjct: 184 LEHCLPESEALE-RVVDTHIYNLRKKLE-AAGLSGVLVNVRGVGYRFRQ 230


>gi|260665127|ref|ZP_05865977.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
 gi|260561181|gb|EEX27155.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
          Length = 223

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 120/201 (59%), Gaps = 2/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L H + + +  + ++V  T  G++ +E+ +   +D +I D+ +    G 
Sbjct: 1   MRILLAEDEKQLNHVLTVAMTRQGYDVDSTFNGQEAVEMAQQKAYDVMIFDIMMPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ +R +   T + +L+  S I+DKV+GL  GADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TAVKEIRASGDKTYIVMLTAKSEIDDKVKGLDDGADDYLTKPFSLKELLARLRSKERRED 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +   +L ++++ + +  + + + L+ KE ++++ L L K+  L+ +   +H++ 
Sbjct: 121 NYNTKKMQLANLFLDVENQEISSR-NSVRLSTKETELLQYLLLNKDKFLSTQTIFSHVWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
             +E E  I+ +++  LR+KL
Sbjct: 180 DSEENE-NIVWIYVSYLREKL 199


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  AKMIR-SQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSNDK 124

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  +  V  +L V++DA  V V    I LT KE+++++LL   +   L +E  +  ++  
Sbjct: 125 SLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  I  +RKKL        YI+T+ G GY + E
Sbjct: 185 DYIGESRIIDTHIKNIRKKLDIP-----YIKTIKGIGYKIDE 221


>gi|213021449|ref|ZP_03335896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L H +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 4   MRVLVVEDNALLRHHLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIVDLGLPDE 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +S PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 61  DGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 121 RNSGLASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKK 200
           LY   +  E   IDV +    KK
Sbjct: 181 LYPDAELRESHTIDVLMGVCGKK 203


>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+L+ED+  LA  I   L+ + + V   D GE  +E  +    D IILD+ L  + GF+
Sbjct: 7   RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVMLPGMDGFQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   D+V GL+SGADDY++KPFN  E + R++ ++RRS  
Sbjct: 67  VCKAMRELDSRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRSSW 126

Query: 122 HAQSLIVTG-DLSVN----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +  G    VN    L  +    QG  I LT  E +++ L   R+   + +   L 
Sbjct: 127 YRPDPVEEGYQFGVNEVYLLSYRAKTAQGE-IDLTEMEVRVLALFFQREGQVIPRGELLE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    + E + +D FI +LRK          +  TV G GY
Sbjct: 186 SVWGYSSDTETRTLDNFIVRLRKYFEPDPTRPTHFLTVRGVGY 228


>gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
 gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family
           protein [Psychroflexus torquis ATCC 700755]
          Length = 225

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED   +A  ++  L  E +   V   GE+ ++L K      I+LD  +  + G +V
Sbjct: 8   ILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLVKHNSISLILLDWMMPKLKGIDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR   ISTP+  L+   +IED + GL+SGA+DYI KPFN EEL+ARI   +R     
Sbjct: 68  CKQLRSEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIETHLRLYYK- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  GDLS+N+    V      I+LT KE+  +  L   K    T++  +  ++D  
Sbjct: 127 IDEVLHLGDLSLNMSKHQVLKSKKPINLTDKEFNFLAHLVRHKGQVCTRQSIIEDVWDIH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +  ++DV++  +RKK+         I+TV G G++  E
Sbjct: 187 FDYDSGVLDVYMNAIRKKMK--LDRNELIKTVRGVGFIADE 225


>gi|581296|emb|CAA54211.1| response regulator [Lactococcus lactis]
 gi|300069939|gb|ADJ59339.1| Nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   ++  L+  N+ V         +++  F  FD I+LD+ +++I G E
Sbjct: 3   KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +ISTP+  +S   + ED + GL  G DDYI+KPF+ ++LVA++ A ++R   
Sbjct: 63  ICKRIR-REISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121

Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  ++ V        G ++  L+ + V V G  I LT +EY ++ELLS R +   T+E  
Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +YD       + I  +I ++R K   A    N I+TV G GY
Sbjct: 182 YDDVYDEYSNALFRSISEYIYQIRSKF--APYDINPIKTVRGLGY 224


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+ +D+K +   +E   K E +  ++   G   +EL +  + D ++LD+ +  + GF
Sbjct: 2   LTLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    + P+ +++      +++ GL  GADDYI KPF+  E++ARIRAI+RR  
Sbjct: 62  EVCREIRKTS-NVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRIS 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + ++   +L +NLD   V +    + LT KE +++  L+   N   +++  LN 
Sbjct: 121 QNDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +++ +D  I +LR KL +    +  I+T+WG GY   E   +E
Sbjct: 181 VWGYDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKFGEKTNEE 231


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 128/230 (55%), Gaps = 15/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +   +   L +E +++     GE+GI++ +    D IILDL L  I G++V
Sbjct: 17  ILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLPGISGYDV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +       P+ +L+  + I DKV GL+ GADDYI+KPF+  E++ARI+  +RR +  
Sbjct: 77  CREIN-PNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRRIKEL 135

Query: 121 ----------GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                       +Q+++ +  ++ + +D++ +      I+L  KEY ++  L+  KN   
Sbjct: 136 DKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNKNIVF 195

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++E  L+ ++      + + +DV + ++RKKL    G  + I+TV+G GY
Sbjct: 196 SREQLLDDIWGYDFLGDSRTVDVHVQRIRKKLG-VTGKNSIIKTVFGVGY 244


>gi|269139949|ref|YP_003296650.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267985610|gb|ACY85439.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304559784|gb|ADM42448.1| DNA-binding response regulator KdpE [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 115/219 (52%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++A+   +   L++E + V   D  + G+      + D IILDLGL D  G E 
Sbjct: 8   ILIVEDEQAIRRFVRAALENEGWRVADADGLQRGLIEAATRQPDLIILDLGLPDGDGVEF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS      DKV  L +GA+D++SKPF   EL+AR+R  +RR    
Sbjct: 68  IRDLRRWS-AIPVIVLSARCDEADKVEALDAGAEDFLSKPFGVAELLARVRVALRRHTRQ 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q   L+   D+ V+L A++V  +G R+HLT  E++++  L       LT+   L+ ++ 
Sbjct: 127 QQESPLVCFADVQVDLLARSVTRRGERLHLTPIEFRLLAELIANSGKVLTQRQLLSSVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEAEPARPRHLLTETGVGY 225


>gi|257870403|ref|ZP_05650056.1| response regulator [Enterococcus gallinarum EG2]
 gi|257804567|gb|EEV33389.1| response regulator [Enterococcus gallinarum EG2]
          Length = 237

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 18/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M IL+IED+++++  +++   +E ++      G++G+E   F E    +D I LDL L  
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWDATFKYDGKEGLE--AFAETPEKWDMITLDLNLPT 58

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ 
Sbjct: 59  MDGMIVAREIRKISNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALH 118

Query: 117 RRS----RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           RRS    +  +++      IVT    +N   +   + G  I  LT KE+ ++  L+ +  
Sbjct: 119 RRSEIAEKASSETSDTTFDIVTDHFKMNTKTREAYLNGKLIDGLTPKEFDLLYTLAKKPR 178

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 179 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 229


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 14  KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 74  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 133 FNHQAGAVQKLDFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 192 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 235


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 11/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +A  I+  L+   + V+  + G + +EL    + D ++LD+ L +  G+E+
Sbjct: 4   ILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNGWEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           L+ +R  K S PV I++ +   + K++GL  GADDYI+KPF  +E+VAR+ A++RRS   
Sbjct: 64  LQYIR-EKSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVIL 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
              Q   + G L +N  +  V + G  +    ++  ++  L+   N T T+E  +  +  
Sbjct: 123 VKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVWG 182

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             Y G D    + +D+ I ++RK L N    +  I+T  G GY
Sbjct: 183 MDYGGSD----RAVDLAIKRVRKTLENWPVQEGEIKTQRGVGY 221


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 121/219 (55%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+I+D+  +   +E+ L +E F V     G  G+ L K      +ILD+ +  + GF
Sbjct: 7   IKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+ ++ +  + +L+    +ED+V+GL  GADDY++KPF+ EEL+ARI A +R   
Sbjct: 67  EVCRMLKKSE-NVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V G   ++   K ++ Q   + L+  EY++++ L L +   L+K M L+ ++ 
Sbjct: 126 PTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +  I++V+I  LR+KL +       I T+ G GY
Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDKE--HRLIRTLRGSGY 222


>gi|330973419|gb|EGH73485.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 230

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAASGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|322516885|ref|ZP_08069784.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
 gi|322124585|gb|EFX96062.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus
           vestibularis ATCC 49124]
          Length = 219

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVY----VTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           +IL+I+D + +   +   L+ +N  V     V DL ++ +       FD I+LD+ + D+
Sbjct: 3   QILVIDDQEDIVKLVVKALELQNHKVTGLTSVLDLDKNSLP-----RFDLILLDIMMPDV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+    +R  ++  P+  ++  +   D V+GL  GADDYI KPF  +EL AR+ A +R
Sbjct: 58  DGFQFCHEIR-DQVDCPILFITAKTQEVDIVQGLTYGADDYICKPFGVKELQARVAAHLR 116

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        +  GD   +L A+ + V+   + LT  EY + + L+  K    +KE    H
Sbjct: 117 REHRERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTH 176

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LY   D+     +   I  +R KL +   G+N IETVWG GY
Sbjct: 177 LYGYEDKGSPTAVAEHIKNIRAKLKDV--GQNPIETVWGIGY 216


>gi|227891159|ref|ZP_04008964.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227867033|gb|EEJ74454.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214820|gb|ADJ79236.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 22/236 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-----EFDAIILDLGLT 55
           M++L+IED+K++   + +  + E ++V   +   DGI   + +     E+D I LDL L 
Sbjct: 1   MKLLMIEDNKSVCEMMSMFFEKEKWDV---EYAYDGISAVEKFKEKSDEWDMITLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +V   +R    + P+ IL+   S  D++ GL+ GAD+Y+SKPF+   L+ARI+A+
Sbjct: 58  GMDGMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKAL 117

Query: 116 VRRSR----GHAQSLIVTGDLSVNLD-------AKTVEVQGHRIH-LTGKEYQMIELLSL 163
            RR++    G  +   V  D  V  D        +   +  +RI  LT KE+ ++ +L+ 
Sbjct: 118 HRRAQISALGSNKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAK 177

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 178 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 231


>gi|237728026|ref|ZP_04558507.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2]
 gi|226910283|gb|EEH96201.1| DNA-binding transcriptional regulator CpxR [Citrobacter sp. 30_2]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F+V V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFDVLVAYDGEQALELLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNSDNGSPTLEVDALSLNPGRQEASFDGQILELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|220925821|ref|YP_002501123.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950428|gb|ACL60820.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   +   L +E F+V +    ++ +   +    +A++LD+ L D  G +V
Sbjct: 4   VLVVEDDSDIRGMLARGLSAEGFSVNLAGSVDEALAAARDRVPEAVLLDIMLPDGSGHDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R+LR       +  LS    + D+V GL  GADDYI KPF  +EL+AR+R  ++R R  
Sbjct: 64  CRSLREGGYPGAILFLSAKDEVSDRVDGLAVGADDYIVKPFAFDELLARLRTHLQRRRAA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++L+  G LS++ + + V        LT +E +++ +L    N  +T+    + L+ 
Sbjct: 124 GEPRTLVTAGRLSLDFETRQVRFGDTTARLTQREAELLSVLMEHANRPVTRGDIFDRLWA 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            +    + ++DV++  LR KL + A  G   I TV GRG++L
Sbjct: 184 NQGGLSLNVVDVYVGYLRTKLGDIARQGGPTIVTVRGRGFML 225


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L     +    +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + I   D      + ++   + V V    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDFIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|163940332|ref|YP_001645216.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011818|ref|ZP_04168999.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|229170277|ref|ZP_04297956.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|163862529|gb|ABY43588.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613200|gb|EEK70346.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228749449|gb|EEL99293.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 8/207 (3%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L++E +N+Y    G++ +++   YE D ++LD+ +    G EV + +R    + P+ +LS
Sbjct: 22  LRNEGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEVCQEVRENN-TVPILMLS 80

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------SRGHAQSLIVTGDL 132
             +   DK+ GL +GADDY+ KPFN  ELVAR++A++RR       S+ +   +I    +
Sbjct: 81  AKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSV 140

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++    TV+V G  I LT  E+ ++ LL+       + E     +++       K + V
Sbjct: 141 EIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGSNKTVMV 200

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGY 219
            I  LR KL     G+  I TVWG GY
Sbjct: 201 HISNLRDKLETVMNGEKLIHTVWGVGY 227


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 16/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDLGL 54
           +L++ED+++L+  +  +L+ E F V     G   ++     E         D ++LDL L
Sbjct: 9   VLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLML 68

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV R LR +  S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA
Sbjct: 69  PGMSGTEVCRQLR-STSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRA 127

Query: 115 IVRRSRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           ++RR  G A+      S+I  G ++++++   V V G  + L  KE+ ++E L       
Sbjct: 128 VLRRG-GEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRV 186

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           LT+   ++ ++      + K +DV + +LR K+         + TV G GY
Sbjct: 187 LTRAQLIDRIWGSDYVGDTKTLDVHVKRLRGKIEEDPSSPVQLLTVRGLGY 237


>gi|319790723|ref|YP_004152363.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593186|gb|ADU34252.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 264

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/254 (31%), Positives = 122/254 (48%), Gaps = 34/254 (13%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI--ILDLGLTDIPG 59
           RIL+ ED+  +A +++ +LKS+ F        E+ I   +F E      ILD+GL D+ G
Sbjct: 6   RILIAEDESGIADTLQYVLKSDGFTPVWCATAEEAI--AQFAEEPPALAILDIGLPDLNG 63

Query: 60  FEVLRALRVAKIS-----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           FE+ + LR    S      P+  L+  S   D+V GL+ GADDYI+KPF+  ELVAR+R 
Sbjct: 64  FELFKRLRALNQSQGGPEVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRT 123

Query: 115 IVRRSRGHAQSLIVTGDLSVN-----------------------LDAKTVEVQ--GHRIH 149
           I+RRS  ++     T     N                       LD + ++++  G  + 
Sbjct: 124 ILRRSTRNSPGGPGTAAGPGNGVPPQISPPAPPTAPQTPPMPFALDNERMQIRYYGRLLE 183

Query: 150 LTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN 209
           L+  EY ++ LL  R     T++  L H++D   +   + +D  I  LR KL   A    
Sbjct: 184 LSRYEYGLLRLLVQRPGRVFTRDELLEHVWDDASDSFDRTVDAHIKTLRAKLKAVAPDVE 243

Query: 210 YIETVWGRGYVLRE 223
            I T+ G GY L E
Sbjct: 244 PIRTLRGTGYALNE 257


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234


>gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  +  S+   L +  F V     GED +   +   +DA++LD+ +  + G E
Sbjct: 6   KVLVVEDDAGIRQSLFETLGALGFAVGEASNGEDAMLRLRMVNYDAVLLDINMPGMGGKE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +  +    PV +L+     +D V  L +GA DY++KPF   EL AR+RA++RRS  
Sbjct: 66  TCRRICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVIRRSHI 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + + +IV G+++++ D + VE +G  +HLT KEY+ +  L       +  E  L  +
Sbjct: 126 PVANPEIIIVIGEITLDTDRRRVEKRGEDLHLTPKEYETLRYLMEHAGRPVRHERILTAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + + V I +LRKK+ +      YI T    GY  RE 
Sbjct: 186 WGSAYGNEREYLRVIINQLRKKIEDDPARPLYILTESYIGYRFREK 231


>gi|238924396|ref|YP_002937912.1| response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Eubacterium rectale ATCC 33656]
 gi|238876071|gb|ACR75778.1| response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Eubacterium rectale ATCC 33656]
          Length = 220

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+E +       G++G +  +   +D ++LD+ L +I G+E+
Sbjct: 4   ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNRYDLLLLDIMLPEINGYEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R     TPV I+S M  +++++RGL+ GADDYI KPF   EL+AR+  ++RR++  
Sbjct: 64  LDYVRRIG-DTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQRM 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ L +  D++++  ++TV   G ++ LT KE+ ++  L   KN  L++      ++   
Sbjct: 123 AERLEIE-DVAIDPKSRTVIKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQEE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +D  + +LRKKL         I TV+  GY L
Sbjct: 182 YTGETRTLDSHVQRLRKKLD----WNEKIVTVFRIGYRL 216


>gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
 gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+   I++ L    ++      G+  IEL ++ +FD I+LD+ L +I G+E
Sbjct: 13  KILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEINGYE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R  +I  PV  L+    ++D+V+GL+ GA+DYI KPF   ELVAR+  ++RR   
Sbjct: 73  LMEYIRPLEI--PVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLRRYHK 130

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  L V  D+SV+  ++ V+     I+LT KEY ++ L    KN  L ++     ++  
Sbjct: 131 TSTVLSVY-DISVDTLSRVVKKNDQVINLTVKEYDLLLLFIQNKNIALFRDRIYEAVWGD 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D+ + ++RKKL    G ++ I  V+  GY L
Sbjct: 190 YYMGDSRTVDLHVQRMRKKL----GLEDKIVPVYKVGYRL 225


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 122 H---AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               A +L    I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|121605861|ref|YP_983190.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594830|gb|ABM38269.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 230

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD  L   +   L  E F V  T+  E G+       F+ ++LD+ +  + G E 
Sbjct: 4   VLLVDDDNELTLMLVQYLSLEGFAVQATNDSETGVAQALSGRFEIVVLDVMMPRLSGMEA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R A    PV +L+      D++ GL+ GADDY+ KP    ELVAR+RAI+RR R  
Sbjct: 64  LRRIR-AGSQIPVIMLTARGDNIDRIVGLEMGADDYVPKPCTPGELVARLRAIMRRVRPF 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A + +  G L +    +     G  + LTG E+ ++E+L  +    ++K+    
Sbjct: 123 VDDSQPAANHLKAGGLELWPGRRQAAWHGAPLELTGTEFSLLEVLVRQAGRLVSKQDLSK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H++     P  + IDV I  +R+KL     G+ +I  V G GY L
Sbjct: 183 HVFGRPLAPFERRIDVHISSIRQKLGQRPDGQPWILGVRGMGYQL 227


>gi|302189715|ref|ZP_07266388.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 129/229 (56%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + FNV + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N  E+VAR+ A++RRS+ 
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G+ +  +   +L V+LDA T  ++G       + LT  E++++  L    +   T+E  
Sbjct: 124 NGNNERHLRYQNLLVDLDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G +N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKLE-IHGVENVLVTVRSVGYRFR 229


>gi|300784271|ref|YP_003764562.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793785|gb|ADJ44160.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 127/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD  +A ++   L      +     G  G+ L + +E D I+LDLGL DI G 
Sbjct: 11  VRVLLVEDDDRVAGALIPALTRRGLAIARLATGA-GV-LDRVHEVDVILLDLGLPDIDGV 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R A     + ++S    ++D+++GL++GADDY+ KP++ EEL+AR+ A+ RR  
Sbjct: 69  TLCRQIR-AVSDVAIIVVSARGEVDDRIQGLRAGADDYLVKPYDVEELLARVEAVRRRRG 127

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            HA   +V   GD++V++    V V G  + L+ KE+Q++ L++  +    ++E  L  +
Sbjct: 128 EHAAEPVVIRVGDVTVDVSRHEVLVDGRTVALSRKEFQVLALVAGARGAVCSREHVLTEV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  R   E + +DV +  LR KL   A     IETV G GY L   A
Sbjct: 188 WGHRGPAESRSLDVHVATLRTKLGRPA----LIETVRGVGYRLGGQA 230


>gi|295689164|ref|YP_003592857.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295431067|gb|ADG10239.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 237

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  L   +   L  E F+V     GE G       ++D ++LD+ +  + G E
Sbjct: 12  RVLLIDDDDQLTTMLSEFLVREGFSVGAAHDGERGEAAALSGDYDLVVLDVMMPRLSGIE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R A    PV +L+      D++ GL  GADDY+ KP +  ELVARIRAI+RR   
Sbjct: 72  VLRRIRRAS-KVPVLLLTARGDEIDRIAGLDLGADDYVPKPCSPGELVARIRAILRRVLT 130

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK-EMFLN 176
                A  +I  G L +   ++  +  G  I LTG E+ ++E L+      ++K ++ LN
Sbjct: 131 NKDPTANDMISKGRLKLWPASRQAQWDGQPIELTGTEFSLLEELARHAGQLVSKDQLSLN 190

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  GR   P  + IDV I  +R+KL     G + I +V  +GY L
Sbjct: 191 AL--GRPLTPYDRRIDVHISSIRQKLGVRRDGSSSILSVRSQGYQL 234


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK +   +E+ LKS+ + V+    G +G+++ +  E    I+D+ +  + G ++
Sbjct: 6   VLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMDGIQM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K   PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R  
Sbjct: 66  TIKLR-EKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+         S+   G L +N D   V V G  + +T  EY+++ LL        + E 
Sbjct: 125 AEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++ R       I V +  +R+K+        Y++ VWG GY + + A
Sbjct: 185 IYERVWNER-AVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235


>gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 225

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F   V   G   +   +  + D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 64  VCRAIR-AESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G++ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGY 220


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +LK E F V++   G   ++     + D ++LDL L  + G EV
Sbjct: 4   VLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G 
Sbjct: 64  CRQLRQTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG-GE 121

Query: 123 AQSL-------IVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +       I+  D + ++++   V V G  + +  KE+ ++E L       LT+   
Sbjct: 122 TEHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ ++      + K +DV I +LR K+         + TV G GY
Sbjct: 182 IDRVWGVDYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGY 226


>gi|238020067|ref|ZP_04600493.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
 gi|237863591|gb|EEP64881.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
          Length = 229

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A+     L    ++V +   G +GIE       D IILD+ L ++ GFEV
Sbjct: 5   ILIIEDDLDIANIERDYLMVAGYDVTIMTNGTEGIEAALNTPVDLIILDVMLPEMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K+  P+ +++      DK+RGL  GADDYI KPF+   L+A+I+A++ + +  
Sbjct: 65  CRQIR-DKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKRL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + I +G++ ++     V V    +HL  KE+Q++E L   ++   +KE   +
Sbjct: 124 TERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELYS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +   + V I +LR+++ +      +I TVWG GY
Sbjct: 184 RVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGY 226


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNHQAGAVQKLDFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/236 (30%), Positives = 132/236 (55%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ +EL +    D I+LD+ L  + G +
Sbjct: 4   KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR   
Sbjct: 64  VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123

Query: 119 ---SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              S+G  +     I+ G+L +  +      +  ++ LT KE++++  L   K   LT++
Sbjct: 124 SSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   +E
Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 244

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL+ ED+ A+   + + LK   ++V         ++    Y    D  +LD+ +  + G
Sbjct: 3   RILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R LR    +  + +LS  S   DK+R L  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  SELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRV 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       ++LI +G  S+N  ++     G  I +T  EYQ++E       + L +
Sbjct: 123 SLSVARPPEDEGRTLI-SGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L H++      + KI+DV I +LR K+        YI T+WG GY
Sbjct: 182 RSILTHIWGNDYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGY 229


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   LK+  F V     G + + +      D ++LD  L  + G E
Sbjct: 32  RILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLE 91

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R    +   PV +L+ +   ED+V GL +GADDY++KPF+  ELV R+RA++RR+
Sbjct: 92  VCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRT 151

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A  +   V G   ++L A+ +   G  + LT +E+ ++  L         ++  L  
Sbjct: 152 VPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRQ 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G +  ++  + V + +LR+K+         + TVWG GY
Sbjct: 212 VW-GWEIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGY 252


>gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 250

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E + +     G   I + +    D ++LD+ L D+ G 
Sbjct: 25  IHVLVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDVMLPDMSGL 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 85  EVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 144

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   + + IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 145 VSTDTSGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNAKRVLSKTQILDR 204

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I+++++  LRKK+ +  G +  I T+ G GYVL+
Sbjct: 205 VWSYDFGGRSNIVELYVSYLRKKIDS--GREPMIHTLRGAGYVLK 247


>gi|146279972|ref|YP_001170130.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558213|gb|ABP72825.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD   A  +   L +E ++V +V D G D +       +D +++D  +  + G
Sbjct: 1   MKILLAEDDSQTAAYLRQGLSAEGYSVDHVPD-GRDALVQATLQPYDLLVIDRMMPGLDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ALR A++  P+ IL+ M  + D+V GLQ+GADDY+ KPF   EL AR+ A+ RR 
Sbjct: 60  LSLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRP 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                S  ++  GDL+++   +T    G  I L  +E++++E L        T+ M L  
Sbjct: 120 ALAETSRDVLRVGDLTLDTTRRTATRGGAEIDLQPREFRLLEHLMRSAGRVQTRTMLLEA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P   +++  I +LR K+      K  + TV G GY+L+
Sbjct: 180 VWDFHFDPGTSVVETHISRLRAKIDRPF-EKPLLHTVRGAGYMLK 223


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|288962696|ref|YP_003452990.1| transcriptional regulator [Azospirillum sp. B510]
 gi|288914962|dbj|BAI76446.1| transcriptional regulator [Azospirillum sp. B510]
          Length = 274

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 20/230 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDL--------GEDGIELCKFYEFDAIIL-D 51
           M+ LLIE    +A +I   L     N    DL        G   ++L      DAII+ D
Sbjct: 1   MQALLIEPADLIAEAIGKQLALSKVNHDRLDLNGLRDLVGGHGAVDL----PHDAIIIGD 56

Query: 52  LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           +G T+      +  LR   ++  +  L            L++GADD + KP    E+ AR
Sbjct: 57  VGDTE----ACVAMLRARNVTAAIICLIERRCANTTAGILRAGADDVLVKPIVSTEIRAR 112

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           + AI RRS G   + +  G L+V LD +  EV G R+ L+ +E+ ++ +L+L     ++K
Sbjct: 113 LEAIRRRSYGLTSNAVTVGRLTVFLDGRDPEVDGERLRLSQREHAILSVLALNHRRVVSK 172

Query: 172 EMFLNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E     +Y   G D P  K+IDV+ICKLRKK+  A GG  YIETV+GRGY
Sbjct: 173 EHIYEEVYGLSGSD-PLDKVIDVYICKLRKKIDTATGGGRYIETVYGRGY 221


>gi|170725392|ref|YP_001759418.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810739|gb|ACA85323.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 237

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 18/234 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  S    G LS++   + + +    + LT  E++++ LL+ +    L+++   
Sbjct: 128 PPKVESHCLSF---GKLSIDPHTQAIRLGDLEVDLTSHEFELLWLLASQAGQVLSRQYIY 184

Query: 176 NHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +L    +DG+D    + IDV + +LRKKL +       I+TVWG+GY+    A
Sbjct: 185 QYLLNIDFDGKD----RKIDVRVSRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|57242135|ref|ZP_00370075.1| response regulator (ompR) [Campylobacter upsaliensis RM3195]
 gi|57017327|gb|EAL54108.1| response regulator (ompR) [Campylobacter upsaliensis RM3195]
          Length = 223

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGE----DGIELCKFYEFDAIILDLGLTD 56
           +++L+IEDD   A  +   L   N N+   +  +    DG++      +D +ILDL L  
Sbjct: 2   IKVLMIEDDVDFAQLLSEYLVQFNINITNYESPQNALNDGLD-----GYDCLILDLTLPG 56

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G EV + +R AK   P+ I S    + DKV GLQ GADDY+ K ++ +E+ ARI ++V
Sbjct: 57  IDGLEVCKEIR-AKSHIPIIISSARGDLSDKVMGLQIGADDYLPKSYDPKEMYARIISLV 115

Query: 117 RRSR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RRS+  G      V  D  V+     +   G  + LT  EY+++E L  +   ++++E  
Sbjct: 116 RRSKRIGENTKESVNSDFKVDKKRHEISCNGRPLTLTPAEYEILEYLISQHGLSISREQL 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++H    RD  + K +DV I +LR K+ + +    YI ++ G GY L
Sbjct: 176 ISHCKSLRDR-DSKSLDVIIGRLRTKIGDNSRAPKYIFSIRGIGYKL 221


>gi|260577375|ref|ZP_05845345.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259020411|gb|EEW23737.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 227

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   + + L++E  +V       +GI          +ILDLGL D  G  
Sbjct: 6   RILVIDDEAPIRRFLRVPLEAEGHSVIEAANAREGILAVAREAPGLVILDLGLPDADGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  +    KV  L +GA DY+ KPF  +EL+ARIR+++R R+ 
Sbjct: 66  VLREIR-GWSQVPVLVLSVRTDEAGKVAALDAGAQDYVVKPFGMKELLARIRSLLRGRAG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   DL ++    TV   G  +HLT +E+ ++ LL+      +T+ M L  L+ 
Sbjct: 125 STPPTVIEIADLHIDPGNHTVTKAGAALHLTRREFDLLWLLASHAGRLVTQGMILKSLWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + + + V++ +LR+KL + A    YI T  G GY
Sbjct: 185 PAHAEDSQYLRVYVRQLRQKLGDDAANPRYIITEPGIGY 223


>gi|227874889|ref|ZP_03993042.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306818185|ref|ZP_07451916.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844664|gb|EEJ54820.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649149|gb|EFM46443.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 238

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   ++++ F+            +    +F  IILDL L D  G E
Sbjct: 11  RVLVVDDEPQMRSIVTFAMETKGFHTATASSAAAAWTMVCQEKFALIILDLMLPDYSGVE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R +++ TP+ +L+ +   ED+V+GL++GADDY++KPF+  EL  R  A++RR   
Sbjct: 71  LCRRIR-SRMDTPIIMLTALGEEEDRVQGLEAGADDYVTKPFSPRELALRASAVLRRFSP 129

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H   ++  G+L +++ A  +  +  RI L+  E ++   L  R    +   + LN ++
Sbjct: 130 EAHTPEILENGELRMDVSALELTYRNQRIPLSEIESRLCLALLRRAGEVVPTRVLLNEVW 189

Query: 180 DGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    P  K I+   + +LRK L+ A G  + I  V  RGY++RE
Sbjct: 190 ESAQIPGGKEILKTTVYRLRKILNQATGLDDLIRNVRYRGYLMRE 234


>gi|138893961|ref|YP_001124414.1| transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265474|gb|ABO65669.1| Transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 220

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKVLLAEDDLHLWELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + IL+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VDICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 RGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q   VT    ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    +  +K ID  I  LRKKL +     + I+TV G GY
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKD-----DVIQTVRGVGY 216


>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 228

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L +  + V   + G  G++  +    D +ILDLGL D+ G E
Sbjct: 3   RILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDGQE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ A+R      P+ +LS  +   DKV  L  GA+DY++KPF   EL+AR+RA++R    
Sbjct: 63  IISAVR-QDCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHLP 121

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +V +G L ++LD   V   G  IHL+ KE+ ++   +   +  LT +  L  ++ 
Sbjct: 122 KEGGQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   + V++ +LR+KL +       I T  G GY LR + +
Sbjct: 182 PAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRLRSDPQ 227


>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
 gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSAESVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D++ +A  I + L+ E ++V     G++ + + +    D ++LD+ +  + G+
Sbjct: 4   ISILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R  + + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRRIR-EQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFM 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   ++ +  G L +  D +TV + G  I LT KE+ ++ LL+         E  
Sbjct: 123 KLNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNVENI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++          + V I  LRKKL        +I+TVWG GY  
Sbjct: 183 FQQVWGEAYFEGGNTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTF 229


>gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 222

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 7/205 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ + + I   LK+ ++     + G   I     +  D ++LDLGL D+ G EV
Sbjct: 6   ILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHNPDIVLLDLGLPDMEGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR------AIV 116
           ++ +R    + P+ ++S  S   DK+  L +GADDYI+KPF+ EEL+ARIR      AI 
Sbjct: 66  IKKIRTWS-NMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIRVSQRRLAIT 124

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  +    S+   G L ++  A    ++   +HLT  EY+++ LLS      LT      
Sbjct: 125 QSGKQPETSVFENGGLKIDYTAGCTFLKDRELHLTPIEYKLLCLLSRNVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKL 201
            ++    E +V  + VF+  LRKKL
Sbjct: 185 QIWGRCSENDVASLRVFMATLRKKL 209


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 13/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   +   L  E++ V     GE  +++  FY+      IILD+ +  +
Sbjct: 4   IKILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDI--FYQEKNIALIILDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+ +L+     ED++ G + G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  NGWEVCREIRETS-KVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILR 120

Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R         L+  G + ++  A TV V G +I L+ KE++++      +   L++E  L
Sbjct: 121 RIGKAPEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
           NH+++     + + ID  + KLR K+       +YI+T+WG GY     EN  D+
Sbjct: 181 NHVWNYDYFGDARTIDTHVKKLRAKIGEKG---DYIKTIWGMGYKFEAEENGSDK 232


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED   LA  +   L +  + V+    G   + L + ++ D +ILD  L  + G EV
Sbjct: 8   ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R  K STPV +L+  S   D V GL+ GADDY++KPF   EL+AR+RA++RR +  
Sbjct: 68  LRTIRQTK-STPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRI 126

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A  ++  GDL ++     V ++   + LT  E+ +++LL        ++ 
Sbjct: 127 QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRN 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ ++        + +D  + +LRKKL++     + IETVWG GY L+  A 
Sbjct: 187 YLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFG---DAIETVWGLGYRLQAEAP 237


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 10/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E + V   + G   I++C+  +FD I++D+ + D  GF 
Sbjct: 3   RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K   PV +LS   +  DK+ G + G DDY++KPF+  EL+ARI+A++ RS+ 
Sbjct: 63  ACKKIKEFK-DIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +   ++  G + ++    TV V G R  LT KEY ++      +   LT++  LN 
Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181

Query: 178 LYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ G D   V + +D  I  LR KL +    ++ I+TV G GY
Sbjct: 182 VW-GYDSFGVDRTVDWQIKLLRSKLGSC---RDCIKTVRGVGY 220


>gi|166032995|ref|ZP_02235824.1| hypothetical protein DORFOR_02716 [Dorea formicigenerans ATCC
           27755]
 gi|166027352|gb|EDR46109.1| hypothetical protein DORFOR_02716 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +      +N+ V + + G + +E       D I+LD+ +  + G E
Sbjct: 4   KILMVDDDRELLKMLNQYFTLKNYTVIIAENGIEAMEKISV-NPDIILLDVNMPGMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R   +S P+  L+     +D+V GL SG DDY+ KPF+ +EL ARI A ++R  R
Sbjct: 63  VCRRIR-DMVSCPIIFLTAKVEEQDRVMGLLSGGDDYVLKPFSLKELDARIIAHLKREER 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H ++     G+L ++  +K V ++G+ + LT  EY++IELLS+       KE     + 
Sbjct: 122 LHRKTEQRFYGELVIDYASKCVHIKGNALGLTKLEYEIIELLSMNPEMVFDKERIYEKIS 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + +++   I ++RKK+ N      YIET+WG GY
Sbjct: 182 GYDAEGDSRVVTELIRRIRKKI-NQYTEHEYIETIWGMGY 220


>gi|118475433|ref|YP_892293.1| transcriptional regulatory protein BaeR [Campylobacter fetus subsp.
           fetus 82-40]
 gi|261884196|ref|ZP_06008235.1| transcriptional regulatory protein BaeR [Campylobacter fetus subsp.
           venerealis str. Azul-94]
 gi|118414659|gb|ABK83079.1| transcriptional regulatory protein BaeR [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 223

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIP 58
           + +L+IEDD   A  + E +LK   FN+ VT+  +  + L      +D +ILDL L  + 
Sbjct: 2   INVLMIEDDPEFAQILSEYLLK---FNIKVTNYEDPYLGLSAGIKNYDLLILDLTLPGMD 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R  K   P+ I S  S + D+V GLQ GADDY+ KP++ +E+ ARI +++RR
Sbjct: 59  GLEVCKEIR-EKYDIPIIISSARSDVNDRVVGLQIGADDYLPKPYDPKEMHARIISLIRR 117

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +   +    T D +  +D K  E+   G+ + LT  EY+++E L  + + ++++E  + 
Sbjct: 118 YKKTNEIQEETADTAFKVDDKRHEISYGGNVLTLTPAEYEILEYLIKQHSFSVSREQLVY 177

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H    +D+ + K +DV I +LR K+ +++    +I +V G GY L
Sbjct: 178 HCKSLKDK-DSKSLDVIIGRLRSKIGDSSKSPKHIFSVRGIGYKL 221


>gi|70731796|ref|YP_261538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68346095|gb|AAY93701.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 240

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD  L   +   L+   F V     G +G+ + +   FD ++LD+ L  + G E
Sbjct: 10  RILTIEDDPVLGAYVREQLEHCGFAVTWCQNGPEGLGIARRRPFDVVLLDILLPGMDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL   R +  STPV ++S + +  D++ G + GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  VLTHFRQSH-STPVLLMSALGAEADRISGFRLGADDYLPKPFSMAELRVRIEAILRRVAL 128

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R     + V+   S+  D +  +V        LT  EY++++ L    +  L+K     
Sbjct: 129 DRRPMPPVPVSLAQSLRFDDERSDVFFAEQWAGLTRSEYRLLDTLHRNGDEVLSKAFLYQ 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H+         + +D+ + ++R+KL      +  + TVWG+GYVL  +A DE
Sbjct: 189 HVLQRGYAAHDRSLDMHVSQIRRKLKALGYSERELRTVWGKGYVL--SALDE 238


>gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 253

 Score =  111 bits (278), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+ED++ LA  I + L + NF V+          L +    D ++LD  L D  G 
Sbjct: 21  VQILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + LR      PV +L+      D V GL+SGADDY++KPF+  EL AR +A++RR  
Sbjct: 81  LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + LI    L ++LD++ V    + + LT KE+ ++  L+       ++   L+ +
Sbjct: 141 SATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  R +     ++  I +LR KL++  G +  ++TVWG GY
Sbjct: 201 WGYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGY 241


>gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDL  +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVGDLIYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  ++TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-AKPLLQTVHGVGYRLAEG 223


>gi|284041766|ref|YP_003392106.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945987|gb|ADB48731.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 227

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+   + L L+    +V     G DG+   +  E D ++LDL L D+ GFEV
Sbjct: 4   VLLIEDDDAVRGGLRLGLRRLGHDVAEAATGGDGLRALQVAEPDVVVLDLMLPDLDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + PV +L+   +  D V GL++GADDY+ KP +   L ARIRA++RR+   
Sbjct: 64  CRRIRTGN-AVPVIMLTARDADLDVVSGLEAGADDYVVKPVHARVLEARIRAVLRRATPA 122

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +       GDL+++  A  V   G  + LT  E +++  LS      L+++  L  ++
Sbjct: 123 SSASSHPAAFGDLAIDRRALVVSCAGEPVALTATELRLLLELSDVPGLVLSRQQLLESVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +++D  + +LR K+ +      YI+TV G GY
Sbjct: 183 GHDYLGDSRLVDACVRRLRAKIESEPADPRYIQTVRGFGY 222


>gi|146313692|ref|YP_001178766.1| DNA-binding transcriptional regulator CpxR [Enterobacter sp. 638]
 gi|145320568|gb|ABP62715.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 232

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  + L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVIVAHDGEQALSLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QTYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    LS+N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNSDNSSPTLEVDSLSLNPGRQEASFDGVTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|56460749|ref|YP_156030.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179759|gb|AAV82481.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 221

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLG---EDGIELCKFYEFDAIILDLGLTDI 57
           MR+LL+EDDK LA  I   +K  N   Y+ +L           K  +F+  I DLGL D 
Sbjct: 1   MRLLLLEDDKTLAEGI---IKGLNRMGYMVELAMNLSQAESALKTDQFELAIFDLGLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
               +++ LR A    P+ +L+    ++ KV  L  GA+DY+ KPF   EL AR+R  VR
Sbjct: 58  NAVSLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVVKPFELRELEARVRVQVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++      +I  GDLSV++ ++    Q   I+LT  E+ +++ L+L     ++KE     
Sbjct: 118 KANLQLNDVINCGDLSVDIASQQCRFQRKLINLTRLEWILLKQLALHVGKIVSKEQLETA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            Y    + E   ++V I  LRKKL+      + I T+ G GY+L++ +
Sbjct: 178 CYGWDSDNESNSLEVHIHHLRKKLN-----PSLITTIRGLGYLLKDES 220


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|730156|sp|Q07597|NISR_LACLA RecName: Full=Nisin biosynthesis regulatory protein nisR
 gi|308848|gb|AAA25201.1| nisR [Lactococcus lactis]
 gi|575305|emb|CAA80466.1| NisR [Lactococcus lactis]
 gi|326406184|gb|ADZ63255.1| nisin biosynthesis two-component system, response regulator NisR
           [Lactococcus lactis subsp. lactis CV56]
          Length = 229

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   ++  L+  N+ V         +++  F  FD I+LD+ +++I G E
Sbjct: 4   KILIVDDDQEILKLMKTALEMRNYEVATHQNISLPLDITDFQGFDLILLDIMMSNIEGTE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  +ISTP+  +S   + ED + GL  G DDYI+KPF+ ++LVA++ A ++R   
Sbjct: 64  ICKRIR-REISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122

Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  ++ V        G ++  L+ + V V G  I LT +EY ++ELLS R +   T+E  
Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + +YD       + I  +I ++R K   A    N I+TV G GY
Sbjct: 183 YDDVYDEYSNALFRSISEYIYQIRSKF--APYDINPIKTVRGLGY 225


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 244

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL+ ED+ A+   + + LK   ++V         ++    Y    D  +LD+ +  + G
Sbjct: 3   RILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R LR    +  + +LS  S   DK+R L  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  SELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRV 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       ++LI +G  S+N  ++     G  I +T  EYQ++E       + L +
Sbjct: 123 SLSIARPPEDEGRTLI-SGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L H++      + KI+DV I +LR K+        YI T+WG GY
Sbjct: 182 RSILTHIWGNDYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGY 229


>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 246

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 24/244 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMPGIDGLQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+ G+
Sbjct: 65  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRT-GN 123

Query: 123 AQ----------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
           A                        L+    L +++ A+        + LT  E+ ++EL
Sbjct: 124 ADGFARPLPPPAGAATATGAPETGGLLTAAGLRMDVQARRAWRGTRELELTRTEFDLLEL 183

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L       L      + ++     P  K + V++  LR+KL +  G    I TV G GY 
Sbjct: 184 LVRNAGIVLDHATIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPALIHTVRGVGYA 242

Query: 221 LREN 224
           LRE+
Sbjct: 243 LRED 246


>gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica]
          Length = 239

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 116/237 (48%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L        I+LDL L    G  
Sbjct: 6   KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    S P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  VCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G  S+NL  + +      I LT  E+ ++++L    +  L++   
Sbjct: 126 KLLGVPTEDDAIINFGKFSLNLSTREMFQGDEHIPLTSGEFSVLKVLVSYPSVPLSRNKL 185

Query: 175 LNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +N L  GR+   +K  IDV I +LR+ +        YI+T+WG GYV      D +C
Sbjct: 186 MN-LALGREYSTMKRSIDVLISRLRRVIEEDPAHPRYIQTIWGLGYVF---VPDGSC 238


>gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 218

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 126/220 (57%), Gaps = 7/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+   I++ L    ++      G+  IEL ++ +FD I+LD+ L +I G+E
Sbjct: 3   KILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEINGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R  +I  PV  L+    ++D+V+GL+ GA+DYI KPF   ELVAR+  ++RR   
Sbjct: 63  LMEYIRPLEI--PVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLRRYHK 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  L V  D+SV+  ++ V+     I+LT KEY ++ L    KN  L ++     ++  
Sbjct: 121 TSTVLSVY-DISVDTLSRVVKKNDQVINLTVKEYDLLLLFIQNKNIALFRDRIYEAVWGD 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D+ + ++RKKL    G ++ I  V+  GY L
Sbjct: 180 YYMGDSRTVDLHVQRMRKKL----GLEDKIVPVYKVGYRL 215


>gi|311739338|ref|ZP_07713174.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305636|gb|EFQ81703.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 237

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD  L  ++ +  K+  + VY    G +G+++   ++ D +ILD+GL D+ G EV
Sbjct: 8   IVIVDDDPRLLTTLSINFKARGYEVYSASTGAEGLQVVSQHQPDVVILDMGLPDMDGREV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R    + PV IL+  S        L  GADDY++KPF+ EEL+AR+R  +R     
Sbjct: 68  LDGIR-GWSAIPVLILTARSDPLFSASALDRGADDYVTKPFSMEELLARVRVALRHGSPQ 126

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S      ++  GD+ +++   ++   G  +HLT  E+ ++  L       + KE  L 
Sbjct: 127 QPSAQREATMVRAGDVLIDVPRHSITKAGKPLHLTPTEWGVLTTLLRAHGGLVRKEDLLA 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +   + ++  +LR+KL        Y+ T  G GY
Sbjct: 187 EIWGPGFEGQSHYLRIYTSQLRRKLETDPSNPQYLLTEPGLGY 229


>gi|120435580|ref|YP_861266.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117577730|emb|CAL66199.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 224

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ L+ ED+K L  SI   L  E N     +D  E   E  + YE+D +ILD+ L    G
Sbjct: 1   MKYLIAEDEKELQQSIATYLSHEANVCETASDYHE-ASEKLELYEYDIVILDINLVTGSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++L+ L+  +    V I+S  SS+++K+ GL  GADDYI+KPF+  EL +RI+A++RR 
Sbjct: 60  LDLLKKLKKQQKKCGVIIISANSSLDNKLEGLDLGADDYITKPFHLAELNSRIKAVLRRG 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + I   ++ ++  A++  V G  I LT KEY ++      +   L+K +   HL+
Sbjct: 120 QFGGDNTINFQEIKLDTMARSAYVNGKAITLTRKEYDLLLFFITNQGRVLSKAIIAEHLW 179

Query: 180 DGRDE---PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G D         I V I  LRKKL+    G  YI+T +G GY
Sbjct: 180 -GDDSDLLDNFDFIYVHINNLRKKLTKE--GAKYIQTAYGSGY 219


>gi|75762882|ref|ZP_00742694.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489629|gb|EAO53033.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 180

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 7/178 (3%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           +ILD+ + ++ G E    +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  E
Sbjct: 2   VILDIMMPNMDGIEACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLE 60

Query: 108 LVARIRAIVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
           L+AR+++ +RR      S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL
Sbjct: 61  LIARVKSQLRRFKKYNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELL 120

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +  K   L+       ++          + V I K+R K+   +    YI+TVWG GY
Sbjct: 121 ARNKGIVLSVAKIYEAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGY 178


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  ++S  ++      G + +   + +  D I+LDL L  + GFEV
Sbjct: 6   ILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGMDGFEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+      D++ GL+ GADDY+ KPF+  E++ R+RA++RR++
Sbjct: 66  CKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRRNK 125

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +       LSV+++A   E+    + LT  E++++  L       LT+E  LN +
Sbjct: 126 GEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLNTV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL + A    ++ETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGDYA---KFVETVRGVGYRFKE 227


>gi|296166889|ref|ZP_06849306.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295897766|gb|EFG77355.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     G   +   +    D ++LD+ L D+ G 
Sbjct: 11  INVLVVDDESVLAEMVSMALRYEGWNIATAGDGASALAAARGQRPDVVVLDVMLPDMSGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 71  DVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 130

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + + +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 131 VTTLDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDR 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I++++I  LRKK+ N  G    I T+ G GYVL+
Sbjct: 191 VWSYDFGGRSNIVELYISYLRKKIDN--GRDPMIHTLRGAGYVLK 233


>gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 228

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 118/227 (51%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD  + + ++  L  E ++      G +   L    E  +  ++LDL L  IPG
Sbjct: 3   KILIVEDDTNINNLLQEALSKEGYSCEQAFSGTEAKLLLNMQEHGYALVLLDLMLPGIPG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             VL  +R  K + PV +L+   S+++KV  L SGADDYI+KPF   E++AR++  +R  
Sbjct: 63  EAVLEEIR-KKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQLRHK 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  Q  +   D+ +N D   VE+ G  +  +T +E+ ++ELL        +KE   
Sbjct: 122 EEKEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFSKEDIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +D     E K +DV I  +RKK+      + YIETVWG GY L 
Sbjct: 182 EYAWDEPYMGETKTLDVHISNIRKKIKQVT-SEEYIETVWGIGYRLH 227


>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
 gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 SSDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 227


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   + +      F V     G + +   +  + D +ILD+ +  + GFEV
Sbjct: 6   VLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+  +  +D++ GL+ GADDY++KPFN +E+VAR++AI+RR+   
Sbjct: 66  CQQIRKYS-PVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q     ++   +L +N+   TV   G  + L  KE +++  L+      L++E  L  +
Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +D     + + +D  + +LRKKL         I+TVWG GY
Sbjct: 185 WDYSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGY 225


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 9/221 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  + L +    D IILD+ +  + GFEV
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R +    P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 64  SEAVR-SFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY---IETVWGRGY 219
             E + + +DV I +LR++       K+Y   I TV G GY
Sbjct: 183 DYEGDERTVDVHIKRLRERFPE----KDYPFAIHTVRGLGY 219


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +    K E+    +   GE+ I + + Y    ++LD+ +    G+EV
Sbjct: 4   ILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R AK   PV +++      +K+ GL  GADDYI KPF+  E++ARIRAI+RR    
Sbjct: 64  CRKIR-AKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   +++++   +L +NL+  T+ + G +I LT KE + +  L+   N   T++  L+ 
Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+      + + +D  I +LR KL         I+T+WG GY
Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGY 224


>gi|302528854|ref|ZP_07281196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437749|gb|EFL09565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A SI+  L +E F+V V   G   +E       D ++LD+ L    G E
Sbjct: 7   RVLVVEDDLTIAASIDARLSAEGFSVTVAHDGPAAVEAEAATSPDLVVLDVMLPGFDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           V R ++ A+   PV +L+  +   D + GL  GADDY++KPF+   L ARI+A++R   R
Sbjct: 67  VCRRIQ-ARRPVPVLMLTARADETDLLVGLGVGADDYLTKPFSMRVLSARIQALLRRVER 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+  IV GDL +++  + V   G    LT  E+ ++   + R      +E  L+ +
Sbjct: 126 SSAAAEERIVLGDLEIDIAERRVRRGGEPAQLTPIEFDLLVHFARRPRAVQPRERLLSEV 185

Query: 179 YDGRDEPE---VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +      + +D  I  LR+KL     G + I TV G GY L
Sbjct: 186 WDWDVQATGAGTRAVDSHIKALRRKL-----GADLIRTVHGVGYAL 226


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 15/228 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  ++  L    ++      G+  ++  +    D I+LD+ L  + G+E+
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR--- 118
            R LR      PV +L+  +  ED++RGL+ GADDYI K PF+  E+VAR+++++RR   
Sbjct: 78  CRQLRTFS-DVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNAL 136

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++  A+SL+   D+          V+G  ++LT  E ++++  +       ++E 
Sbjct: 137 VQQRTAQAPARSLLHIDDVR-----HQASVRGEALNLTPLELRLLKTFASAPGQVFSREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LNHL+D       + +D  I  LR+KL     G N I+ V+G GY  
Sbjct: 192 LLNHLHDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCF 239


>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 225

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 228

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 226


>gi|257485259|ref|ZP_05639300.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|331010859|gb|EGH90915.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 130/229 (56%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + F+V + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFSVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N +E+VAR+ A++RRS+ 
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPKEVVARVHAVLRRSQQ 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A +   +   +L V+LDA T  ++GH      + LT  E++++  L    +   T+E  
Sbjct: 124 NASNDRHLRYQNLLVDLDAVTAIIEGHDGTDTLLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G  N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKL-EIHGVDNVLVTVRSVGYRFR 229


>gi|251779963|ref|ZP_04822883.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084278|gb|EES50168.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 218

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IEDD+A+++ I++ L    +       G +   L K   FD I++D+ L  + GF
Sbjct: 3   INVLIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFNLLKEEPFDLILMDIMLPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  ++  ++ PV  L+  + + DKV GL+SGA+DYI KPF   EL+ARI  ++RR  
Sbjct: 63  ELMK--KIKDLNIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I   +L +  + + ++     I LT KE++++ LL   KN  L++E  L  ++ 
Sbjct: 121 KNSNC-IEFENLKIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I KLRKKL  A      I+TV+  GY L E
Sbjct: 180 YEYMGETRTIDNHIQKLRKKLDIADN----IKTVYKIGYRLEE 218


>gi|227114871|ref|ZP_03828527.1| two component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|253687063|ref|YP_003016253.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753641|gb|ACT11717.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  L H +   L S   +  +   G   ++  K   +D ++LD  L  + GF
Sbjct: 1   MRVLVVDDDSVLCHWLGSKLHSHGHSCRMVHDGAHALKAIKDEVYDVVLLDRMLPIMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR L+ ++   P+ +LS +    D+V GL+ GA+DY+ KPFN  EL  R+  + RR +
Sbjct: 61  TVLRELQGSR-HPPIMLLSALDRDVDRVMGLELGAEDYLGKPFNFNELRLRLDIMARRGK 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H    S++   DL ++   +     G RI LT KE +++ +L       +T+ M L  +
Sbjct: 120 RHVDNPSMLTFEDLQLDRMQRVAWRGGKRIDLTDKEIKLLIILMENPGQAITRTMLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +    +P+  +IDV + KLR K+      +  I+T+   GY L    KD+T
Sbjct: 180 WGYNFDPQTNLIDVHMSKLRAKIDKGF-PRPLIKTLRAMGYALGAVDKDKT 229


>gi|223041419|ref|ZP_03611622.1| transcriptional regulatory protein CpxR [Actinobacillus minor 202]
 gi|223017677|gb|EEF16084.1| transcriptional regulatory protein CpxR [Actinobacillus minor 202]
          Length = 242

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F+V V   G++ +   +   +D ++LD+ +  + G E
Sbjct: 3   KILLVDDDIELTELLAELLSLEGFDVKVVHNGQEALNELEENVYDLVLLDIMMPILNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K++TPV +LS      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  TLKQLR-QKLTTPVLMLSARDDDIDRVLGLELGADDYLPKPFNDRELVARIKAILRRTSS 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLR 164
            +    S+ V   L+    +K +   G  +H              LTG E+ ++++L   
Sbjct: 122 VSNISDSVTVPVTLAPEDGSKQLSFGGVELHPGRQQATFEGKDLELTGTEFALLQILIRN 181

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               L++E+    +   R  P  + ID+ I  LRKKL        + +T+ GRGY+L
Sbjct: 182 PGQILSRELLSLEILGKRLTPYDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLL 238


>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 233

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L LK     V V   GE G+   + +  D ++LDL L ++ G E
Sbjct: 3   RVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLMLPNMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +K   P+ ILS      D V GL++GADDYI KP   E L ARIRA++RR   
Sbjct: 63  VCRRIRESK-RIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLRRVAP 121

Query: 119 -SRGHAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              G ++     G     DL+V+     V   G  + L   E +++  L+       +++
Sbjct: 122 AQDGGSRDPADAGPERHADLTVDRTTLVVAKHGTELPLAPSELKLLLFLTATPGQVYSRQ 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L  +++     +V+++D  + +LR ++ +      Y++TV G GY
Sbjct: 182 QLLEQVWEHSFYGDVRLVDACVMRLRARIEDDPRKPVYVQTVRGFGY 228


>gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +   P+ +L+  S   D V+ L +GADDY+ KPF   EL+ARIRA +R     
Sbjct: 70  CQDIR-RESGVPIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +  + ++++V + +LR K+   A     I TV G GY
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGY 227


>gi|134291387|ref|YP_001115156.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134576|gb|ABO58901.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 241

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L  E F V      +          +D ++LDLG+ D  G 
Sbjct: 1   MRLLLVEDNARLASLLADGLAKEGFAVDWCATLDLATRAFASTPYDLVLLDLGMPDGNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ALR    + PV I++  SS++D+V GL SG DDY+ KPF   EL AR RA++RR  
Sbjct: 61  TFVKALRRGGHTVPVLIITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++   + V V G  + +  +E  ++E L  R    +TK    + LY 
Sbjct: 121 ACLGTTLAVANLELDTAGREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     ++  + +LR++L+ AA  +  + T  G GY+L
Sbjct: 181 LEAEVTPNALEAVVSRLRRRLA-AAHAQVALHTAHGIGYML 220


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           RIL++ED+  L  ++E       F+   T  G + I L  +  E D ++LDL L  I G+
Sbjct: 4   RILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGY 63

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V + LR  + +   P+ +L+      D+  G  +GADDY++KPF+  EL+ R++A++RR
Sbjct: 64  DVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRR 123

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++       A   +  G L+V+  A  V V G  + LT  E++++      +   LT++ 
Sbjct: 124 AQVVSLPSAAVEDLCFGPLTVDQTAHQVWVNGQEVQLTYMEFKLLVAFLENRGRLLTRDF 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L+ ++      + + ID  + +LR+KLS+A     YIET+ G GY
Sbjct: 184 LLDEVWGLSAAVQTRTIDTHVKRLRQKLSDAG---QYIETLRGAGY 226


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   ++   +   + V+    G + I+     + D I+LD+ + +  G E
Sbjct: 3   KILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQAS-RQPDIILLDINMPEADGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  L+      DKV G  +G DDYI KPF+ EEL ARI A +RR   
Sbjct: 62  VCRRIR-DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRRENR 120

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  + +++ G LSV+    TV   G  I+L  KE+Q++ELLS       +KE     ++
Sbjct: 121 SAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E +  ++   I +LR KLS    G ++IETVWG GY
Sbjct: 181 SYDAEGDSSVVAEHIRRLRSKLSKYGEG-SHIETVWGMGY 219


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 126/233 (54%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        +Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 122 IETAVAEENASSGSQELTI-GNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 181 TREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDYI+KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 V      DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    Y+G D    + ID  I  LR+K+ +      YI+TV+G GY
Sbjct: 183 VMGFDYEGYD----RTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGY 224


>gi|329850363|ref|ZP_08265208.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
 gi|328840678|gb|EGF90249.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
          Length = 225

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  +   +   L ++++ V      ++G++     + D ++LDLGL D  G 
Sbjct: 1   MKILIIEDEGDIRRYLRATLTAQDYAVLEAATAKEGVQNLTLNQPDLVLLDLGLPDQDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           + +RA+R      P+ +LS      DK+  L+SGADDY++KPF   EL+ARI+  +R   
Sbjct: 61  DFIRAVREWS-QVPIIVLSAREQEADKIEALESGADDYLTKPFAPRELLARIKVALRHAA 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G    +     L ++L A+ V + G  +HLT  EY+++  L       LT    LN 
Sbjct: 120 RDAGPRMEIFERNGLRLDLSARRVWLDGEDVHLTPIEYRLLTALIQHPGKVLTHAQLLNA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  R   +   + +    LR+KL +      +I T  G GY
Sbjct: 180 VWGRRSTEQNHYLRIHTQHLREKLKDDPLSPRFILTEPGIGY 221


>gi|331694622|ref|YP_004330861.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949311|gb|AEA23008.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 274

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 126/218 (57%), Gaps = 8/218 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED+  LA  +  + + E + V V   G  G+       +D  +LD GL  + G +
Sbjct: 50  RVLLVEDEGELAAMLAGLFREEGYLVDVAADGHTGLHYGLTRSYDVAVLDRGLPALEGLD 109

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR + ++TPV +LS + +  D+V GL +GA+DY++KPF+ +EL+AR+RA+ RR   
Sbjct: 110 LLGRLRRSGVTTPVLVLSALGNPADRVAGLDAGAEDYLTKPFDIDELLARLRALRRRHLD 169

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+ L + G+  ++LDA+ V V G R+ L+ +E  ++  L+ R      ++  L   +  
Sbjct: 170 AARVLPI-GEARLDLDARDVVVGGSRVALSERECALLATLASRPRQVFGRDDLLALAFPE 228

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + P V  +D ++  LR+KL     G+  +ETV GRGY
Sbjct: 229 AENPVV--VDTYVHYLRRKL-----GRGVVETVRGRGY 259


>gi|302865105|ref|YP_003833742.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302567964|gb|ADL44166.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 226

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++ + L++  ++V V   G   ++    +  D ++LDLGL D+ G +
Sbjct: 3   RILVVDDEPQILRALRINLRARGYDVEVAGSGAAALKAAAGHPPDLVVLDLGLPDLDGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V+R LR    + P+ +LSG +  EDKV  L +GADDY++KPF  +EL+ARIRA+ RR   
Sbjct: 63  VIRGLR-GWTAVPIIVLSGRAGSEDKVAALDAGADDYVTKPFGVDELLARIRAVTRRLAP 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +  G  +V+L  +TV    G  + LT  ++ M+E L       +++   L+ +
Sbjct: 122 ATPAVPALRIGHNTVDLADRTVTRDDGVEVKLTPTQWAMLEKLLRNPGKLVSQRQLLHDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   +  ++ +LR+KL +      ++ T  G GY  R 
Sbjct: 182 WGPEYHHETNYLRQYMAQLRRKLEDDPARPRHLITEPGMGYRYRP 226


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD ++   ++   +     V     G  G EL      DA I+D+ L  + G 
Sbjct: 1   MRILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R L+ A +  PV +L+ +   EDK +G + GADDY++KPF  EEL+ R++A+ RR +
Sbjct: 61  ELCRRLK-ATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G L ++L    V ++G   +L  KE++++  L+        +E  +  ++ 
Sbjct: 120 RSAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E + + +DV I +LR +  + A     I TV G GY L  N 
Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPA---LTIRTVRGVGYALEVNG 221


>gi|182437916|ref|YP_001825635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778552|ref|ZP_08237817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466432|dbj|BAG20952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658885|gb|EGE43731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 237

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 25/238 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERVGFTVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR  GH
Sbjct: 66  CRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRF-GH 123

Query: 123 AQ------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           A                    ++V GDL V+ D   V   G ++ LT  E +++   S  
Sbjct: 124 AAGPDGLGQGGAEGDAETFGGVLVFGDLEVDTDGMEVRRAGEQVALTPTEMRLLLEFSSA 183

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T L+++  L  ++D     + +++DV + +LR K+     G++ I+TV G GY LR
Sbjct: 184 PGTVLSRDRLLERVWDYGWGGDTRVVDVHVQRLRTKI-----GQDRIDTVRGFGYKLR 236


>gi|167773041|ref|ZP_02445094.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
 gi|167664974|gb|EDS09104.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
          Length = 235

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++DD+ +  SI + L  EN  +Y    G   + +   +    I++D+ +  + G 
Sbjct: 5   LSVLVVDDDREIVESIAIYLSRENLTIYKAYDGLQALNIVAAHTIHLILMDIMMPKMDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           + +  LR  + + P+ ++S      DKV GL+ GADDYI+KPFN  EL+AR+++ +R   
Sbjct: 65  KAMLKLR-ERNNIPIILVSAKGEDADKVFGLEFGADDYITKPFNPLELIARVKSQLRRYV 123

Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                R RG     IV G L++++  K +EV G  + LT  EY++ ELL          +
Sbjct: 124 MLGTARDRGGPAETIVCGGLTLDVRQKRLEVDGEEVKLTPIEYKITELLMRHPGRVFPID 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++         + V I ++R+K+        Y++ VWG GY
Sbjct: 184 EIYERVWNEPSFAPENTVAVHIRRIREKIEINPKEPKYLKVVWGIGY 230


>gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 225

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F  +    G+  +   +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLMLPGTDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRQIR-AESGVPIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+++++   +V   G  I LT  E+ ++  L+ +     ++E+ L  ++  
Sbjct: 123 PAPEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGY 220


>gi|330983218|gb|EGH81321.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 148

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 90/152 (59%), Gaps = 5/152 (3%)

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+G AQ L+    +S
Sbjct: 2   PVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQGRAQPLLEHAGIS 61

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++  ++ V  +G  + +T  EYQ++  L +R    +T+E   N LY  +D+ E   ++V 
Sbjct: 62  LDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDKVESNTLEVL 121

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I  LRKKLS        I TV G GY+L   A
Sbjct: 122 IHNLRKKLST-----ELIRTVRGVGYLLELKA 148


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ ED+ AL+  +   L+ E +   +   G++ + + K  + D ++ D  +  + G EV
Sbjct: 5   IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKVSGIEV 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR A  +   P+ +L+  S   D++RGL +GADDY+ KPF+  E +ARIRA++RR R
Sbjct: 65  CRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +   +  G++SV+  +  V+  G  IHL   EY++++          ++E  L+ ++
Sbjct: 125 PGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L N     + I TV   GY L
Sbjct: 185 GNDVYVEARTVDVHIGRLRKAL-NKGDEYDPIRTVRSAGYSL 225


>gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 233

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD      +      E F+      G +G+       FD ++LD+ +  + G E
Sbjct: 7   RLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  K   PV +L+      D++ GL+ GADDY+ KP    ELVARI AI+RRS  
Sbjct: 67  VLKKMR-EKSHIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRRSAT 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   ++ G ++++   ++V      I LTG E+ + ELL+    T + KE     + 
Sbjct: 126 AWAAAAPVIVGPVTIDPAQRSVNSAAGPIALTGTEFSLFELLARHAGTPVPKEEIYPKVL 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P  + IDV +  +R K+S   G K  IE++ G GY L
Sbjct: 186 GRPMGPYDRAIDVHVSAIRHKVSAVIGKKIAIESIRGVGYQL 227


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G + +E     E D ++LD+ +  + G+ V
Sbjct: 11  ILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVMMPRLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEKD 129

Query: 119 -SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G   S +I  GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  +  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 KVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVF 233


>gi|325519076|gb|EGC98569.1| OmpR family two-component system response regulator [Burkholderia
           sp. TJI49]
          Length = 220

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 114/219 (52%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL +  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVKDGDAASLALRSTGYGLLLLDLGLPNRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR    + P  I++    + D++ GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SVLASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ +  G L ++     V +    + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTTLAIGALRLDPVKHQVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E E   + V I  LRKKL     G + I TV G GY
Sbjct: 181 WGEEIESNAVQVHIHNLRKKL-----GHDMIRTVRGVGY 214


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F+V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEESVVEFGEFRLNLGTREMFRGEESMPLTSGEFAVLKALVTNSREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  SIE+ LKSE F +Y    G   +E+    +   I++D+ +  + G + 
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              +R  + + P+ ++S  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR  + 
Sbjct: 64  TVKIREER-NIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+     + ++ +G L +N   K V++ G  I +T  EY++IELL   K    + +    
Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++         + V I ++R+K+        +++ VWG GY
Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGY 225


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+IEDD  LA  I   L    + V+    G++G+++    E   D IILDL L D+ G
Sbjct: 4   QILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRR----SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR    ++  +QS  +T G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E     + +      + + IDV I +LR  + +       I TV G GY
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233


>gi|78067080|ref|YP_369849.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967825|gb|ABB09205.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 232

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ++LIED+K +   +   L+ E+  V+  + G+ G+      + D +I+DLGL D  G 
Sbjct: 6   LTVVLIEDEKQIRRFVRAALEEEDIAVFEAETGKQGLIDAATRKPDLVIVDLGLPDTDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL ARIRA +RR  
Sbjct: 66  DVIRELR-GWSEVPVIVLSARTQEEEKVAALDAGADDYLTKPFGVSELRARIRAQLRRRN 124

Query: 121 --GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             G  +S  VT G + V+L  + V      +HLT  EY+++  L       LT    L  
Sbjct: 125 QGGANESPKVTFGTVIVDLALRQVWRDNEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + +++  LR+KL        YI T  G GY L
Sbjct: 185 VWGPSHVESHHYLRIYMAHLRQKLERDPAQPEYIVTETGVGYRL 228


>gi|325283532|ref|YP_004256073.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315341|gb|ADY26456.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +A+ ++L L    + V   D+   G+   +    D IILDLGL D  G +V
Sbjct: 6   ILIIEDDLDIANVLKLDLTDAGYEVDHADVAMTGLIKAREDNPDLIILDLGLPDFDGGDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + P+ +L+   ++++KVR L  GADDYI KPF+ +EL+AR++  +R+    
Sbjct: 66  VQRLR-KNSAVPIIVLTARDTVDEKVRLLGLGADDYIIKPFHPDELLARVKVQLRQRVTE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           + S+   GDL+++   +    +G  + L+ KE+ ++ LL  +     +++     ++ GR
Sbjct: 125 SLSM---GDLTLDPQKRLATYKGEELRLSPKEFDILSLLIRQPGRVYSRQEIGQEIWQGR 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++DV +  LR KL +   G   + TV G GY LR
Sbjct: 182 LPEGSNVVDVHMANLRAKLRD-LDGYGLLRTVRGVGYALR 220


>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V  QG  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRSLQVADLSYDLDTLEVTRQGRMLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  + TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-EKPLLHTVHGVGYRLAEG 223


>gi|291563400|emb|CBL42216.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 230

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++A+  ++   L  E   V     G + +EL K  +F  +ILD+ +  + G++
Sbjct: 5   KILLVDDERAIRLAVRTALTREGMQVTEAADGSEALELLKKQQFHLVILDVMMEHVGGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+A+R A   TPV +LSG S   D+V GL  GAD Y++KPF+   L+   +A++RRS+ 
Sbjct: 65  VLQAMRAAGDHTPVMMLSGKSDEMDQVLGLGFGADSYLTKPFHTAILIQTAKALIRRSQI 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           ++Q     GD  +     TV+         G  ++ T +E  +   L        TKE  
Sbjct: 125 YSQG--AAGDAGIRKGPFTVDTLKMECLKNGEPLNFTAREMTLFRFLMEHPGQVFTKEQL 182

Query: 175 LNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++   +E  V    I V++ ++R K+ +      Y++TV G GY+L
Sbjct: 183 YTQVW---NEAVVDDNTITVYVKRIRNKIEDDPKQPRYLKTVRGIGYML 228


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + +   +    D ++LD+ L D+ GF 
Sbjct: 10  RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGFA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV  L+   + +DKV GL+  ADDY++KPF+ EE++ARIRA++RR+RG
Sbjct: 70  VAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRRTRG 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  GDL ++ +A  V   G  + L+  E++++    +     L+K   L+H++
Sbjct: 129 DLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  +++ ++  LR+K+  +      I T+ G GYVLR
Sbjct: 189 NYDFGGDAGVVESYVSYLRRKVDVSE--PRLIHTLRGVGYVLR 229


>gi|297563860|ref|YP_003682833.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848309|gb|ADH70327.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 224

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A +++  L+ E     +   G+  +E     ++DAI+LD  +  + G 
Sbjct: 1   MRVLIVEDEVFMAEALQAGLRQEAIAADIALDGDQALERAAVNDYDAIVLDRDIPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V  A+      T V +L+  + + DKV G   GADDY++KPF  EELV R+RA+ RR  
Sbjct: 61  DVCAAVVRDHPGTRVLMLTAATRLRDKVGGFALGADDYLTKPFALEELVVRLRALARRPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++   +  E  G R+ L  K++ ++ELL       ++ E  L  ++D
Sbjct: 121 SSVPPVLEWGGLRLDPYRREAERDGRRLRLPRKQFAVLELLIRAGGGVVSSETLLEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P      V + +LR+ L    G  + I TV G GY L
Sbjct: 181 ENADPFTSAPRVTMSQLRRTL----GRPDPIVTVPGAGYRL 217


>gi|186476807|ref|YP_001858277.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193266|gb|ACC71231.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 232

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED++ +   +   L+ E   VY    G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEQQIRRFVRASLEGEGMTVYDAPTGKQGLIEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      P+ +LS  +   +KV  L +GADDY++KPF   EL ARIRA +RR    
Sbjct: 68  IRELR-GWSELPIIVLSARTQESEKVAALDAGADDYLTKPFGVSELFARIRAHLRRRNQG 126

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A++  V  G ++V+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GPAETPQVQFGGVTVDLALRQVSRDGEPVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL      D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A        +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 130 AIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|310828961|ref|YP_003961318.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
 gi|308740695|gb|ADO38355.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
          Length = 228

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI LIEDD+A+A ++ L+L+SE F V      ++  +     +FD  ++D+ L D  GF 
Sbjct: 3   RIFLIEDDQAIAKNLMLLLQSEGFIVTHAATRKEATDTLVDNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  + + PV  L+        V GL  GADDYI+KPF   EL+ARI   +R+S  
Sbjct: 63  VCTEVKEVQ-NIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSGR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +  V G L V+  +  V+  G  + L+  EY+++ +      + +T++  L+ L+D 
Sbjct: 122 SAATFEVCG-LQVDTASGVVKKDGSEVFLSALEYRLLLMFVNNPKSIITRDRLLDELWDA 180

Query: 182 RDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             E      + V+I +LR+K+ +  G    I TV G GY L +    E
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIEDDPGKPKIIRTVRGTGYRLGDGHAPE 228


>gi|291528837|emb|CBK94423.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 231

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL++EDDK +   I+ +L+ ++++V +   G + +E  K  E F  +I+D+ +  + G 
Sbjct: 3   KILVVEDDKTVYSGIKKLLELQHYSVVIAQNGMEALE--KIDESFSLVIMDIMMPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E  R +R  + S P+  LS  S   DK+ GL+ G DDY++KPF+  EL+++++A++RR  
Sbjct: 61  ETCRRMR-ERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +R +    I T  L +  +   VE   + I LTGKEY++++LL    +   T 
Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179

Query: 172 EMFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           EM    ++D       K  + V I  LR KL  A G    I T WGRGY
Sbjct: 180 EMIYEMVWDEVFTYNAKNTVMVHIKNLRNKLIKACGDA-CIHTEWGRGY 227


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +A  +   L  + + +     G+  +E+C     D IILDL L  + G+E
Sbjct: 5   KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+   I+   P+ IL+      D + GL+ GADDY+ KPF+  EL ARI+ I+RR+
Sbjct: 65  VCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRA 124

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     I  G L +  DA  +  +  +I LT  E ++I++L       +++E  L  
Sbjct: 125 HPASPQNETIKLGKLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ G    E + IDV I +LR K+  A    N IETV  RGY L  +  DE
Sbjct: 185 VW-GTYLGETRTIDVHISRLRTKVKKAGLNFNLIETVRHRGYRLGGDINDE 234


>gi|257790446|ref|YP_003181052.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474343|gb|ACV54663.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 243

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 20/239 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           I++IEDD  +   + + L+   F       G +G  L    E FD +I DL L  + G +
Sbjct: 7   IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-----AIV 116
           V+R +R A+   PV ++S  ++  DKV  L+ GADDY++KPF+ +EL+AR++     A V
Sbjct: 67  VVRLVR-ARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHADV 125

Query: 117 RRSRGH------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           RR+               A + +   D ++++DA+T+ VQG  + LT  E+ ++E L  R
Sbjct: 126 RRASASGAPSDERLPEPAAAAAMRYKDWTLDVDARTLSVQGEPVRLTRLEFNILEALVRR 185

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                TK       ++     E K I+V +  +R KL  AA     IETVWG G+ L E
Sbjct: 186 PRKVFTKRELFEIAWNEESAVEEKAINVHVSNIRSKL-RAAHSAGEIETVWGIGFKLAE 243


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 14/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDL-GEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D++ +   + L LK ENF+   T + G + + L K + FD I+LD+ L DI GF
Sbjct: 18  KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +RR  
Sbjct: 78  ELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQ- 135

Query: 121 GHAQSLIVTGDLSVNLDAKT---------VEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            H       G+  +NL  ++         + V    +H T KE +++  L    N   T 
Sbjct: 136 -HMTQEPNNGE-KLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTA 193

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           E     ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 194 EQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKEQ 250


>gi|183599542|ref|ZP_02961035.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827]
 gi|188021789|gb|EDU59829.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827]
          Length = 238

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  L  ++   L+   FN     L  D  +      FD ++LDLGL D  G 
Sbjct: 14  MNILLVEDDLQLGKALCRGLELAGFNPLWVRLLSDAKQQLNSRNFDLMLLDLGLPDGDGN 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L A R +  S P+ IL+  + +++ V  L SGADD+++KPF   EL++R++A+ RR  
Sbjct: 74  EELIAWRRSGQSIPIIILTARNQMDNLVTSLDSGADDFLTKPFAMPELISRVKAVSRRMA 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +    +L +N     V +    + L+GKEYQ++  L    +  + K      L+ 
Sbjct: 134 GFSSEIWQLDNLQLNPINHQVLLNDQLLLLSGKEYQLLYELVKNADNVVRKADLEQRLFG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D+ E   ++V I  LR+K+     GK+ I T+ G GY+L++ A+
Sbjct: 194 FDDKIESNSLEVHIHNLRRKI-----GKDRIITIRGIGYLLKKEAQ 234


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   IE+ LK++ + V+    G +G+E+ +  +    I+D+ +  + G  +
Sbjct: 6   ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIMMPKMDGITM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR  +   PV +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKLR-EQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAKY 124

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         +L V G + +N D K V V G  + +T KE+ ++ LL        + E 
Sbjct: 125 LKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++   D    + I V +  +R+K+   +    Y++ VWG GY
Sbjct: 185 IYERVWK-EDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGY 229


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   +   L+ E F V     GE+ ++  +  + D +ILDL L  + G +
Sbjct: 16  RILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLD 75

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      DKV GL+ GADDYI+KPFN  ELVAR+RA++RRS
Sbjct: 76  ICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRS 135

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++       L V+     V V G +I L   E +++  L+ +     +++  L
Sbjct: 136 SQRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      E + +DV I +LR  +        YI TV G GY
Sbjct: 196 DAVWGEEAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGY 239


>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
          Length = 229

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 81/226 (35%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + G  G+E     E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAIN-DEIDLILLDVMMPRLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKKLR-ENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQIN 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I   D+ V    +     G  I LT  E+ ++  L       +TKE     
Sbjct: 122 TAPKAASDKIQYQDIEVFPGKQEAYCNGQLIDLTTTEFALLSHLIQNPGQVITKEALSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   R     + ID+ I  LRKK+   + GK+ I+T+ GRGY+L E
Sbjct: 182 VLGKRLAAFDRAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLLVE 227


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ++   +   L+   + V +   GE  + L    + D ++LDL L  + G E
Sbjct: 13  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   PV +L+ +    D+V GL+ GADDY+ KPF+  ELV R+ +I+RR+R 
Sbjct: 73  VCRRLR-ERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 131

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++  G L ++LDA+   + G  + LTG+E+ ++  L        ++   L  +
Sbjct: 132 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G    +   + V + +LR+K+         I TVWG GY
Sbjct: 192 W-GWSFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGY 231


>gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
 gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter
           [Staphylococcus lugdunensis HKU09-01]
 gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis
           M23590]
          Length = 224

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 120/216 (55%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD+ +   +   L +E ++ Y    G   ++  +    D  I+D+ +  + GFE+ 
Sbjct: 5   LIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLEQQTVDIAIVDIMMAGMDGFELC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +++     PV +L+   ++ DK R   SG DDY++KPF  +EL+ RI+A++RR + +A
Sbjct: 65  QQIKL-DFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQINA 123

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           + +I  G+L++N +   V+V    + L  KE+Q++ +L+        ++  +  ++    
Sbjct: 124 EHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWGFDY 183

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E + + +DV I +LR++LS  A     I TV G+GY
Sbjct: 184 EGDERTLDVHIKRLRQRLSKLAANVT-ITTVRGQGY 218


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+ +D+K +A  ++  L+ E F V VT  G+    L KF+E   D IILDL L +I G
Sbjct: 4   QILIADDEKRIAEILQAYLEREGFMVVVTYDGKTA--LAKFHEENPDLIILDLMLPEISG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R  +   P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++A +RRS
Sbjct: 62  WDVCREIR-KESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRS 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S+++   L ++   + V++ G  + LT  E+ ++  L+       ++   L+ 
Sbjct: 121 EYTPSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDK 180

Query: 178 L---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   Y+G +    + ID  I  LRKK+        YI T+ G GY +++  
Sbjct: 181 LGEAYEGYE----RTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKMKDKG 227


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ++   +   L+   + V +   GE  + L    + D ++LDL L  + G E
Sbjct: 10  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   PV +L+ +    D+V GL+ GADDY+ KPF+  ELV R+ +I+RR+R 
Sbjct: 70  VCRRLR-ERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++  G L ++LDA+   + G  + LTG+E+ ++  L        ++   L  +
Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + G    +   + V + +LR+K+         I TVWG GY
Sbjct: 189 W-GWSFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGY 228


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  I  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +   A    YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  111 bits (277), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV
Sbjct: 13  ILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 73  AKMIR-SQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQ 131

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT++  +  ++  
Sbjct: 132 STDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 192 EYAGDTRMIDTHMKNIRKKLDIP-----YIKTVKGIGYKIDE 228


>gi|307330402|ref|ZP_07609546.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883919|gb|EFN14961.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 218

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED   LA +I   L+ E   V +   G+    +C    +D I+LD  L  + G 
Sbjct: 1   MRVLIAEDHHILARTIATGLRREAMAVDLAGSGDVAERMCLLNAYDIIVLDRDLPVLSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  K    + +L+   S+ED+V GL  GADDY++KPF+  EL+ARIRA+ RR  
Sbjct: 61  EVCLRLRALKDPPRILMLTAAGSVEDRVSGLDLGADDYLAKPFDFAELLARIRALSRRVP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++   + V + G  + L+ KE+ +++LL   +   +T    L+ ++D
Sbjct: 121 TPPLMILRHGGIELDRGRREVRIDGRPVELSPKEFAVLQLLMEARGEAVTHRALLDRVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     +   + +LR KL    G  + I    G+GY L
Sbjct: 181 EHMDSRTSAVRATVSRLRGKL----GRSDAISMDDGKGYRL 217


>gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 228

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDDK +A ++ L+L SE F V       D I +    +FD  ++D+ L D  GF V
Sbjct: 4   IFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNKFDLALIDISLPDGNGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              ++   ++ PV  L+        V GL  GADDYI+KPF   EL+ARI+  +R+S   
Sbjct: 64  CTEIK-EMMNIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNALRKSESF 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +  + G L V+  +  V+  G+ + L+  EY+++ +      + +T+   L+ L+D  
Sbjct: 123 GTNFEIRG-LYVDTVSGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRTKLLDELWDAA 181

Query: 183 DE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E      + V+I +LR+K+ N       I TV G GY L
Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPADPQIILTVRGTGYRL 221


>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
 gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
          Length = 239

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
           43243]
          Length = 239

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+K +   +   L +  + V     G++ +E      +D I+LDL L  + G 
Sbjct: 14  LRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 74  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++  +   +    +   + LT KE  ++E L +     +++E  + H++D
Sbjct: 134 VQNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVWD 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LRKKL  A  G + I+   G GY +RE +
Sbjct: 194 ATADSFSGAIRVHMSSLRKKLK-AKLGYDPIQNKVGEGYKIREES 237


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G + +E  +    D ++LD+ +  + G+ V
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDGYGV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 76  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 134

Query: 121 ---GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S ++T GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 135 QVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 194

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 242


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 7/241 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V     G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFT 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + ++  P+ +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  VCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRT 123

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +   V      I LT  E++++  L  R   T+     
Sbjct: 124 DRIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V +  LR KL        YI+TV+G GY L   + ++  E  E
Sbjct: 184 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSFNQAMEEAE 243

Query: 235 T 235
            
Sbjct: 244 A 244


>gi|183597266|ref|ZP_02958759.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
 gi|188023581|gb|EDU61621.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
          Length = 232

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++         ++  + +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQLDSSIDLLLLDVM-MPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+        ++    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQNQGDNSNTPVLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLM 228


>gi|242241244|ref|YP_002989425.1| DNA-binding transcriptional regulator CpxR [Dickeya dadantii
           Ech703]
 gi|242133301|gb|ACS87603.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 232

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 22/238 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DDK L   ++ +L+ E F+V V   GE  + +        ++  + +    G +
Sbjct: 3   KILLVDDDKELTSLLKELLEMEGFSVVVAHDGEQALSVLDDSIDLLLLDIM-MPRKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELR-QRYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     G+      A T+EV   R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGEAG----APTIEVDALRLNPGRQEASFDHIVLELTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSTA 232


>gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI K F+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNLD-------AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 238


>gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 221

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 116/204 (56%), Gaps = 3/204 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  L   + + ++   + V   D G   +E  K   +D IILD+ +  + G 
Sbjct: 1   MKILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCYDVIILDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R +   T + +L+  + I+D+V GL SGADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  TALKQIRESGDKTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLRSKERREE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +  GD+S+N+  +  E+  H  I L+G+E Q++    L +   L+ +  LNH++
Sbjct: 121 DFTPNELKVGDVSLNVSEQ--ELASHNSIRLSGQETQLMNYFLLNEGKELSTDELLNHVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSN 203
              ++    ++ +++  LR+KL +
Sbjct: 179 KNDEDANSDVVWIYVSYLRQKLQS 202


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 228

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 226


>gi|221065046|ref|ZP_03541151.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220710069|gb|EED65437.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 239

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 14/215 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  I+L L    + V      E  +E+     FD  ++D+GL  I G 
Sbjct: 1   MRLLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGLPGINGL 60

Query: 61  EVLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           E+ R LR + + +   PV IL+   +++D+V+GL  GADDY+ KPF   EL+AR+RA++R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTV---------EVQGH--RIHLTGKEYQMIELLSLRKN 166
           RS+    +++  G + ++   +           E +G    I L  +E+ ++E L L   
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGRLLPIDLGPREWTVLEYLLLNAP 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL 201
              +KE  L  L     E     ++V++ +LR KL
Sbjct: 181 KPASKEKLLQALTGWDREITPNAVEVYVSRLRSKL 215


>gi|120401900|ref|YP_951729.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954718|gb|ABM11723.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 111/210 (52%), Gaps = 9/210 (4%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA-KISTPVCIL 78
           L+ +   V     G + + L      D  +LD+ +    G  + R LR     S PV +L
Sbjct: 18  LERDGLEVCTAPNGSEALRLLGSRRIDVAVLDVMMPGPDGIALCRNLRKGGDYSVPVILL 77

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV---TGDLSVN 135
           + +   +D++ GL++GADDY++KPF+  EL  R+R+++RRS      L V   +GDL+V 
Sbjct: 78  TALGEEQDRIAGLEAGADDYLTKPFSPRELALRVRSVLRRSPATGGVLPVDIRSGDLTVT 137

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFIC 195
             ++TV + G  + LT +E+ ++       +T  T+E  L  ++   D  ++  + V + 
Sbjct: 138 TASRTVTMAGTPVSLTNREFDLLLFFLTHPDTVFTREDLLKQVWLW-DFGDLSTVTVHVK 196

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +LR KL    G ++ ++TVWGRGY+    A
Sbjct: 197 RLRSKL----GDRHRVQTVWGRGYMWTSGA 222


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 119/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N +  GR+   + + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 17/227 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+K +A  I+  L+ E +   VT  G++ I++ +   FD +ILDL L  + G E
Sbjct: 7   RVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R+     P+ +L+      D++ GL  GADDY++KPF+ +EL+AR+RAI+RR+  
Sbjct: 67  ICNRIRLQS-DVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSN 125

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF-- 174
              R H   L   GDL V++       +G  + LT  E++++ +         ++E    
Sbjct: 126 EGVRAHLIEL-NGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVL 184

Query: 175 --LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L + Y G D    + IDV I  +R K+        YI TV+G GY
Sbjct: 185 KVLGYDYVGYD----RTIDVHIKNVRHKIE--CEQYKYIVTVYGVGY 225


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIP 58
           + +L+IEDD  +A  I+L ++   +   V   GE G+E   +YE   D I LD+ L  I 
Sbjct: 6   LSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLE--SYYETYPDFIFLDIMLPKID 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+ + +R      P+ +L+G    +DK++GL  GADDY+ KPF+  ELVAR++A++RR
Sbjct: 64  GWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRR 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        V   L + +D K  +       I +  KE  ++  L+   N   T++  L+
Sbjct: 124 ADLLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    E + + IDV I ++R+KL+  A  K  I+T+ G GY   E 
Sbjct: 184 QIWGYAFEGDPRTIDVHIKRIREKLTE-ADAKWTIKTIRGVGYKFLEK 230


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +   L+S  F       G +G+   +     A+ILDL L  + GFEV
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGLDGFEV 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + L+      S P+ +L+      D++ GL+ GADDY+ KPF+  ELV R+R++++R  
Sbjct: 66  CKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKRHA 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++    LSV++ A  V + G  + LT  E++++  L       LT++  LN +
Sbjct: 126 PEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLNSV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL + A   + IETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGHFA---DMIETVRGVGYRFKE 227


>gi|332701528|ref|ZP_08421616.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551677|gb|EGJ48721.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 255

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD AL   +   L  E     +   G++G+EL     FD ++LDL L D+ G  +
Sbjct: 4   ILIIDDDIALGELLVEYLSREALEATIASTGKEGLELALSGRFDLVLLDLILPDVDGLTM 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L  LR  +   PV ILSG      ++ GL+ GADD++ KPF   ELVAR+RAI+RR+   
Sbjct: 64  LYMLR-KQDGPPVFILSGRGDDVSRIVGLEMGADDFLPKPFEPRELVARMRAILRRTSKA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFLNHL 178
           +  A S +  GDL +    +       R+ LT  E+ ++E L       ++KE + L  L
Sbjct: 123 KCSAYSELQVGDLRLEPRLRQAWRGEERLTLTQNEFNLLETLLRSAGQVVSKEDLSLAAL 182

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             GR+  P  + +DV I  LR+KL         I TV G GY+  E 
Sbjct: 183 --GRELSPLDRSVDVHISNLRRKLGPQPDESERIRTVRGVGYMYMER 227


>gi|255655908|ref|ZP_05401317.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450670|ref|ZP_06892423.1| response regulator [Clostridium difficile NAP08]
 gi|296879213|ref|ZP_06903208.1| response regulator [Clostridium difficile NAP07]
 gi|296260514|gb|EFH07356.1| response regulator [Clostridium difficile NAP08]
 gi|296429756|gb|EFH15608.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  L   +    +++ FNV+     ++G+ +      D IILD  L D  GF
Sbjct: 1   MNLLIIEDDINLNEGLFYAFENDGFNVFKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R  K   P+ +L+   S  D+V+GL+ G DDYI+KPF+   L AR++  +R+ +
Sbjct: 61  DVCQLIR-EKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-K 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + +   G   + LD K ++V  +++   L+  EY+++  L   K   L KE  L+H+
Sbjct: 119 SNNKVIYSNG---IKLDQKLLKVYKNKVCLELSSVEYKLLSYLIENKGQILLKEQILHHI 175

Query: 179 YDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D  +   +  I+ V I +LR K+ +      YI+T +G GY+  E
Sbjct: 176 WDSEENYVDENIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYLWNE 221


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL+ +D+  +A  ++  L+ E F V VT  G++   L KF E   D IILDL L +I G
Sbjct: 4   KILIADDENKIAEILKAYLEREGFKVSVTYNGKEA--LAKFREENPDLIILDLMLPEISG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R  +   P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR +  +RRS
Sbjct: 62  WDVCREIR-KESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRS 120

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++ ++V   L ++ + + V++ G  I LT  E+ ++  L+       ++   L+ 
Sbjct: 121 EHTPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDK 180

Query: 178 L---YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   Y+G +    + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 181 LGEAYEGYE----RTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG 227


>gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+ED++ +   +++ L+ E + V+    GE+GI++ +  +   ++LD+ L  + GF
Sbjct: 3   VKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVR 117
            V + LR    +  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI++    + 
Sbjct: 63  AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + ++ I+     ++   +        I LT  EYQ++++        + ++  L  
Sbjct: 123 PEEENDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + KI+DV I +LR K+        YIETVWG GY
Sbjct: 183 VWGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGY 224


>gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
 gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   ++  L+  ++       G +   L     +  ++LDL L  I G EV
Sbjct: 4   ILIVEDDMNINGLLKEALEKADYLCTQAFSGTEARMLLAMNRYSVVLLDLMLPGISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  + +TPV IL+   +I+DKV  LQSGADDY++KPF+ +E++AR+   +RR  G 
Sbjct: 64  LQEIR-KQGNTPVIILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEGS 122

Query: 123 -AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++  +V   L ++ +   V V Q     +T +E+ ++ELL        +KE    + ++
Sbjct: 123 FSEGNLVYQGLELDRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAWE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E K +DV I  +RKK+ +    K YIET+WG GY L
Sbjct: 183 EAYMGETKTLDVHISNIRKKIKSVT-SKEYIETIWGIGYRL 222


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED + +A+ I + L+     V      +D  +  +   F  I+LDL L D+ G ++
Sbjct: 5   VLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMDGLDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+     P+ +L+  +   D+V+GL++GADDY++KPF+  EL AR++A++RRS   
Sbjct: 65  CKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRRSNVQ 124

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        I   DL ++    +V      I LT  E+ ++  L+       ++E  L  
Sbjct: 125 AIKNVEPEQIKIADLVIDQATHSVYRNKQLITLTSTEFSLLAFLAKSPGRVYSREQLLAE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D  ++     ++  + +LR K+        YI+TVWG GY L
Sbjct: 185 VWDYHNDCYEHTVNSHMNRLRNKIEPNPAKPTYIKTVWGVGYKL 228


>gi|160878900|ref|YP_001557868.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427566|gb|ABX41129.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 245

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 7/235 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ + + I   L + ++ V  +  G +G+ +   +  D I+LDLGL DI G E+
Sbjct: 6   ILIIEDEQNICNFIATNLNAYDYRVLKSFTGAEGLSIITSHCPDLILLDLGLPDIDGMEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    + P+ ++S  +  ++KV+ L  GADDYI+KPF   EL+ARIR  +R +   
Sbjct: 66  ISKIRSWS-TIPIIVISARTQEKEKVQALDLGADDYITKPFGTSELLARIRTALRHNASL 124

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    S+    D  ++ +   V V G  +HLT  E++++ LL+      +T +  + 
Sbjct: 125 ESGKNFPPSIFRAKDFVIDFNKHIVMVGGKDVHLTQIEFKLVSLLANNSGRVMTYDSIIT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            ++    +   +I+ V +  +R+K+        YI T  G GY + +    +T E
Sbjct: 185 KIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMIDEEPMQTTE 239


>gi|320107469|ref|YP_004183059.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925990|gb|ADV83065.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 231

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD AL H++   L +  F +     GE  +   + ++F+ ++LDL +  + G   
Sbjct: 6   VLIVEDDVALRHTLSATLSALGFEIMEAPNGETALVELRNHKFEVVLLDLNMPGMGGMSA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R A     + +L+  +  EDK+  L +GADDY++KPF   EL AR+RA VRR R  
Sbjct: 66  CEKIRAAHPCLSIIVLTVRNRDEDKIAALDAGADDYVTKPFGLPELAARMRAGVRRVRQP 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     I  G+L ++  A+ +   G  +HLT KE+++  +L     T +T    L+ ++
Sbjct: 126 EGSELGPIEIGELKIDPLARRLTKNGAELHLTPKEFELTHVLMRHAGTPITHHKLLSEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E + +  +I +LR+K+ +      Y+ T    GY
Sbjct: 186 GDEYGNEREYLRTYISQLRRKIEDDPSNPRYLLTENYIGY 225


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60
           RIL++ED+ ALA  +   L+SE F V   + G++  I L +    D +ILD  L  + G 
Sbjct: 19  RILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLP-DLVILDWMLPGVSGL 77

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ R LR      + PV +L+      ++VRGL  GADDY+ KPF+  EL+AR+ A++RR
Sbjct: 78  EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R     + +V GD+ ++ + + V+  G  IHL   E++++E L  +     ++   L+ 
Sbjct: 138 ARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLDS 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E + + +DV + +LRK +      K+ I TV G GY   E 
Sbjct: 198 VWGLSAEIDERTVDVHVGRLRKAIIRGR-EKDPIRTVRGTGYSFDET 243


>gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  LK + ++V V   G  G+E    ++ D I+LD+ L  + G E
Sbjct: 8   RVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGRWQPDLILLDVMLPVMNGTE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL A+R +   TPV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RR+R 
Sbjct: 68  VLAAIRRSG-DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRARQ 126

Query: 122 H--AQSLIVTGDLSVNLDAKTVEV---QG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              A   +    L V+ D+ T  V   QG HR+ LT  E+ ++  L        ++   L
Sbjct: 127 AKVADDKLCWAGLEVDPDSLTAVVNNAQGTHRLDLTPTEFSILVTLMRAPTRPFSRLFLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     D  E +++D  +  LR+KL  AAG    +  V   GY  R+
Sbjct: 187 ENCLPESDALE-RVVDTHVYNLRRKL-EAAGMTEILPAVRSVGYRFRQ 232


>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ +   +   LK   F+VY    G +G+E+    ++D II+D  L    G E
Sbjct: 4   KILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQYDVIIVDWMLPYHDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           ++   R   +   + +L+      D +    +G DDY+SKPF+  EL ARI A +RR   
Sbjct: 64  LVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRRVDM 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    I  GD+ +NLD  TV V  + + LT KE+ ++  L   +N  LT++  L+ ++ 
Sbjct: 124 NHELRRIEVGDIVINLDQHTVVVGSNPVELTKKEFDLLIYLLQNENIVLTRDQILSEIWH 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +I+DV I KLR KL ++      I ++ G GYV +
Sbjct: 184 FDYDGDTRIVDVHIFKLRTKLEDS---NVKINSLRGVGYVAK 222


>gi|239928452|ref|ZP_04685405.1| two-component regulator CutR [Streptomyces ghanaensis ATCC 14672]
 gi|291436779|ref|ZP_06576169.1| two-component regulator CutR [Streptomyces ghanaensis ATCC 14672]
 gi|329940048|ref|ZP_08289330.1| two-component regulator CutR [Streptomyces griseoaurantiacus M045]
 gi|291339674|gb|EFE66630.1| two-component regulator CutR [Streptomyces ghanaensis ATCC 14672]
 gi|329300874|gb|EGG44770.1| two-component regulator CutR [Streptomyces griseoaurantiacus M045]
          Length = 217

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRRIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGREVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|225018020|ref|ZP_03707212.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum
           DSM 5476]
 gi|224949226|gb|EEG30435.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum
           DSM 5476]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++DD+A+  S+ + L +EN  V     G D +E     +   I++D+ +  + G 
Sbjct: 4   LTVLVVDDDRAIVDSVAIFLNNENIGVIKAYDGLDALEQLSENQVHLILMDIMMPKLDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           + +  +R  K + P+ ++S  +   DK+ GL  GADDYI+KP+N  ELVAR+++ +RR  
Sbjct: 64  QAMLKIR-EKRNIPIILVSAKTEDTDKIIGLNMGADDYITKPYNPLELVARVKSQLRRYT 122

Query: 119 ----SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                R    S I+ TG L +N D K + V G  + LT  EY++ ELL   +N   +   
Sbjct: 123 RLGNDRNQTASAILRTGGLELNTDTKQLTVDGEFVKLTPIEYRITELLMRNQNRVFSIGE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               ++         I+ V I ++R+K+        Y++ VWG GY
Sbjct: 183 IYEQVWQEPCYNVDNIVAVHIRRIREKIEINPKEPRYLKVVWGIGY 228


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I L L+ E + V     G + ++  K      ++LD+ L  I G++
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRKVS-SIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEY 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   +L +N    T+ ++G+ I L  KE +++  L+   N   T+E  L  ++
Sbjct: 125 KEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +DV + ++R+K+ +  G    ++TVWG GY
Sbjct: 185 GFDFYGDSRTVDVHVKRVREKI-DLEGQPWQLKTVWGVGY 223


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV
Sbjct: 6   ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R ++ + PV +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   
Sbjct: 66  AKMIR-SQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSNDK 124

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  +  V  +L V++DA  V V    I LT KE+++++LL   +   L +E  +  ++  
Sbjct: 125 SLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +IID  +  +RKKL        YI+T+ G GY + E
Sbjct: 185 DYIGESRIIDTHMKNIRKKLDIP-----YIKTIKGIGYKIDE 221


>gi|332668985|ref|YP_004451993.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338023|gb|AEE44606.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 244

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+  LA  +   L+ E + V     G   +   +    D I+LD+ L D+ G 
Sbjct: 20  VRALVVDDEPTLAELLSTALRYEGWTVEHALSGHAAVRQARATTPDVIVLDVMLPDLTGL 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R A    PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+RA++RR+ 
Sbjct: 80  EVLRRIRAAHPHVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRALLRRAG 139

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++++V GDL+++ D+  V   G  I LT  E++++          L+K   L+ 
Sbjct: 140 AVSAREEAVLVVGDLTLDEDSHEVTRGGDDIRLTATEFELLRYFMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  I+++++  LR+K+    G +  + T+ G GYVL+
Sbjct: 200 VWQYDFGGQANIVELYVSYLRRKIDK--GREPMLHTLRGVGYVLK 242


>gi|300790274|ref|YP_003770565.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799788|gb|ADJ50163.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 220

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+   L+  +  V V   GE  +E    + +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERLLADSVAEGLRRFSMAVDVCYDGEQAMERVGVHGYDVVVLDRDLPKVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V  A+  A     V +L+  + + D+V GL  GADDY++KPF   ELVAR++A+ RR+R
Sbjct: 61  DVCAAVVRAGGEARVLMLTAAADVTDRVAGLGLGADDYLTKPFAFAELVARVQALSRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++L        G  + L+ KE+ ++E+L   + T ++ E  L   +D
Sbjct: 121 PALPPVLERDGVVLDLPRHQAARDGRFLLLSPKEFAVLEVLMRAEGTVVSAEDLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P    + V +  LR+KL    G    IETV G GY
Sbjct: 181 EHADPFTNAVRVAVMTLRRKL----GDPPVIETVPGAGY 215


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 125/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  I   L+ E +   ++  G +G+E     + D I+LDL L  + G +V
Sbjct: 4   ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +++R ++ ++  PV +L+      DKV G + GADDY+ KPF+  EL+ RI+AI+RR  
Sbjct: 64  CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRNA 123

Query: 119 -SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +   A+S I+  G +S++ +   V V G  +  T  E++++  L +R     ++++ L 
Sbjct: 124 NANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +D  + +LR K+  A    + I+TV G GY L
Sbjct: 184 DVWGYNFVEDTRTVDTHVTRLRTKMGEAG---DMIKTVRGFGYKL 225


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  ++  L+   ++      G+ G+++ +  + D ++LDL L  + GF 
Sbjct: 4   KILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A+ S P+ +L+      D + GL+ GADDYI+KPF+  ++VARI+A++RR  G
Sbjct: 64  VCRTLR-AESSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  ++     + ++L  +TV ++ + I  LT  E+ ++  L       LT+   L+ +
Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E   + +D  I  +R+K+        YI TV+G GY   E
Sbjct: 183 QGEEGEAYDRTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKFAE 227


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++DD  L   +E  L  + F V V    E    L     +  ++LDL L    G 
Sbjct: 6   FKILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + PV +L+      D++ GL+ GADDY++KPFN  EL+ARIRA++RR  
Sbjct: 66  SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             A          I  G   +NL  + +      + LT  E+ +++ L       L+++ 
Sbjct: 126 VEAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDK 185

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +N L  GRD   + + IDV + +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 LMN-LARGRDYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVFVPDGK 238


>gi|88860495|ref|ZP_01135133.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           tunicata D2]
 gi|88817693|gb|EAR27510.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           tunicata D2]
          Length = 235

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 15/234 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD +LA  +   L  + F+V +   G+  + L K ++   ++LD+ L  + G  
Sbjct: 6   KILLVEDDLSLAQWVSEYLTEQGFHVILCHRGDYVVRLVKQHDPILVLLDIMLPGMDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV +L+      D+V GL+ GA DYI KP     L+ARI++ +R ++ 
Sbjct: 66  VCRELR-SFYQQPVILLTAKGEEVDEVIGLEVGATDYIIKPVRPRALLARIKSALRAAQP 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MF 174
             Q        I  G LS++L ++ V+V    + L+  EY ++  L+   +  L ++ +F
Sbjct: 125 STQLSDEPVEYIEVGQLSIDLRSRNVKVANKEVVLSNAEYSLLSFLASNADKVLDRDSVF 184

Query: 175 L---NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      YDG D    + +DV I  LRKK ++       I+T+WG+GY+L   A
Sbjct: 185 MATKGREYDGLD----RSVDVLISALRKKFADDPQNPQKIKTIWGQGYLLVSAA 234


>gi|319785548|ref|YP_004145024.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317171436|gb|ADV14974.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+  +A  ++  L+ ++  V       D   + +    DA++LD  L D  G 
Sbjct: 1   MRILLIEDEPEMASVLKTALERQDIIVDHAATLADAEAVARLGHHDAVVLDRRLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   +  PV  L+ +S ++D+V GL +GADDY+ KPF   ELVAR+ A+ RRS 
Sbjct: 61  SLIPRLRALHLDVPVIALTALSGLDDRVAGLDAGADDYMVKPFATVELVARLNALHRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + ++ G L+ +   +   V+   + L  +E  ++E L  R   T+ +      +Y 
Sbjct: 121 TTRANQVMVGRLTYDFRHREALVEDQALELPRRERLVLETLIRRPGRTIMRGALEEAVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             DE     +D  I +LR+KL + A G   I  +   GY+LR
Sbjct: 181 LDDEIGSNALDAHISRLRRKLDDVAAGIE-IRAIRNLGYLLR 221


>gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
 gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
          Length = 231

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGGEGLTQAALNKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R++   
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQAPQV 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S    G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 GSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHVDDTHYLRIVVGHLRQKLGDDPTAPRFIVTEAGVGYRL 226


>gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88]
 gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88]
          Length = 240

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I   L  E F+V     G +G    +  +F  IILD+ L  + G E+
Sbjct: 14  VLIVEDDKEINNLISKALIKEGFSVVQAFEGIEGYSKYRKIDFSIIILDIMLPYLNGIEI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R   +  P+ ++S      D++ GL+ GADDYI KPF   ELVARI++ +RR    
Sbjct: 74  MKKIREESV-VPIILISAKDEEYDRIIGLELGADDYIVKPFFVGELVARIKSQLRRYIDF 132

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S I  GD+ ++L+   +   G +I LT KE+ +++L     N   TK     +
Sbjct: 133 HKNDEVISRIQKGDIILDLNNYCIYKNGEKIDLTAKEFGLLKLFFTNPNRVFTKMQIFEN 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   I V I +LR K+ +      YI TVWG GY L
Sbjct: 193 VWHEEYRGDDNTIMVNIRRLRNKIEDDPNNPEYILTVWGIGYKL 236


>gi|50119730|ref|YP_048897.1| two component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610256|emb|CAG73699.1| two component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 236

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  L H +   L S   +  +   G   ++  K   +D ++LD  L  + GF
Sbjct: 1   MRVLVVDDDSVLCHWLGSKLHSHGHSCRMVHDGAHALKAIKDEVYDVVLLDRMLPIMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR L+ ++   P+ +LS +    D+V GL+ GA+DY+ KPFN  EL  R+  + RR +
Sbjct: 61  TVLRELQGSR-HPPIMLLSALDRDVDRVMGLELGAEDYLGKPFNFNELRLRLDIMARRGK 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            HA   S+++  DL ++   +       RI LT KE +++ +L       +T+ M L  +
Sbjct: 120 RHADNPSMLIFEDLQLDRMQRVAWRGTKRIDLTDKEIKLLIILMENPGQAITRTMLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +    +P+  +IDV + KLR K+      +  I+T+   GY L    KD+T
Sbjct: 180 WGYNFDPQTNLIDVHMSKLRAKIDKGF-PRPLIKTLRAMGYALGAVDKDKT 229


>gi|21224205|ref|NP_629984.1| two-component regulator CutR [Streptomyces coelicolor A3(2)]
 gi|302554669|ref|ZP_07307011.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|61221861|sp|P0A4I1|CUTR_STRCO RecName: Full=Transcriptional regulatory protein CutR; AltName:
           Full=Defective melC1 suppressor protein
 gi|61221862|sp|P0A4I2|CUTR_STRLI RecName: Full=Transcriptional regulatory protein CutR; AltName:
           Full=Defective melC1 suppressor protein
 gi|581687|emb|CAA41599.1| cutR protein [Streptomyces lividans]
 gi|2815348|emb|CAA16471.1| two-component regulator CutR [Streptomyces coelicolor A3(2)]
 gi|302472287|gb|EFL35380.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 217

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +A +I   L+ E F V V   GE+ +     ++   ++LD+ +  + GF+
Sbjct: 4   RILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLNGFD 63

Query: 62  VLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           V R  R+     P V +L+  + I DKV GL+ GADDY++KPF+  EL+AR  A++RR  
Sbjct: 64  VCR--RLPTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLE 121

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G A    + I  G L +  D++TV   G  I LT KE+ ++ LL  + +   +++  L 
Sbjct: 122 AGKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E   + +D+ + +LRKKL   A     ++TV+G GY
Sbjct: 182 LVWGIDYEGGTRTVDIHVQRLRKKLG--AQHAALLQTVFGVGY 222


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 127/226 (56%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   ++  L+   + V   + G D ++     ++D IILDL L  I G E
Sbjct: 3   KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  KI+T + IL+      DK+ GL+ GADDY++KPF+  E+VAR++A+ RR   
Sbjct: 63  VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
               S   +++    G+  VNLD+  +  + +  I LT KE++++     +K   L +E 
Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            LN+++      + +++D+ +  LR+K+        +++TV G GY
Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGY 228


>gi|146300797|ref|YP_001195388.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155215|gb|ABQ06069.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 114/220 (51%), Gaps = 1/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ +A SI+   K               I     Y++D I+LDLGL D  GF
Sbjct: 1   MKILIIEDEQDIAQSIQSYFKDNGVKCETAHNYVQAIHKIDNYDYDCILLDLGLPDGDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    +  V I+S   ++E ++     GADDY++KPF+  EL+ R++A+VRR  
Sbjct: 61  DILRELRSKDKTDGVIIISAKETLETRLESFSLGADDYLTKPFHLAELLVRMQALVRRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               + +V  ++ + +  KTV V G ++ LT KE  ++  L    +  L+K     HL  
Sbjct: 121 FKGSNSVVFQEIRIEVFTKTVLVNGQKLELTRKELNLLLFLIGNNDKVLSKAAIAEHLSG 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D  D  +         K  KK    AG  +YI+TV+G GY
Sbjct: 181 DMADMLDSHDFIYAHIKNLKKKLAKAGSGDYIKTVYGEGY 220


>gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 230

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 14/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  LA  +   +++  ++  V + G D  +  +  E D ++LDL L  + G +
Sbjct: 8   RVLIVEDEPDLAQLLNEYMQAAQYSTTVINNGTDANDWLQANEVDIVLLDLMLPGMSGLD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R A    PV +++      D++ GL+ GADDYI KP++  E+VAR +A++RR   
Sbjct: 68  ICRDIRKAS-DVPVIMITAKVEEIDRLIGLELGADDYICKPYSPREVVARTKAVLRRTLS 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S    QS+++  + S      +V V    I LT  EY+M +LL  +     +++  
Sbjct: 127 DTSSSEDQNQSVVLCEERS------SVIVHKQEIELTQIEYRMFKLLFEQPGRIFSRQFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++++Y        + +D  I KLRKKL  AA  ++ I +V+G GY
Sbjct: 181 MDNIYTDYRVVSDRTVDSHIKKLRKKLQAAAPEQDIIRSVYGAGY 225


>gi|315639566|ref|ZP_07894707.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484665|gb|EFU75120.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 241

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 16/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++  L   + +D I LDL L  + 
Sbjct: 3   MNILMIEDNESVSEMMQMFFLNEGWEATFKYDGKEGLDTFLANPHFWDLITLDLNLPSMD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 63  GMIVAREIRKVSKTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 122

Query: 119 -----SRGHAQSL------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
                  G  Q        I T  L VN   +   + G  I  LT KE+ ++  L+ +  
Sbjct: 123 MELVEKEGKVQEASDQEFDIETQFLKVNTKTREAYLNGKLIEGLTPKEFDLLYTLAKKPR 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY
Sbjct: 183 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGY 233


>gi|312195395|ref|YP_004015456.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311226731|gb|ADP79586.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 219

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 116/216 (53%), Gaps = 1/216 (0%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED++ LA  +   L  E F V V   G++G+ +     +DAI+LD+ L  + G+ V R 
Sbjct: 1   MEDEERLAGLLRGGLAGEGFAVDVAHNGQEGLWMATENRYDAIVLDVMLPLLNGYAVCRR 60

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           LR     TP+ +L+      D+   L +GADD++SKPF+   L+AR+RA++RR       
Sbjct: 61  LREDGNWTPIMMLTAKDGEYDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGRERPV 120

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
           ++  GDL+V+            I LT KE+ ++  L+ R    ++K   L   +D   + 
Sbjct: 121 VLTAGDLAVDPAGLRCRRGETEIALTPKEFAVLHALARRVGEVVSKAELLEQAWDFAYDG 180

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  I++V+I  LR+K+ +A  G+  + TV G GY L
Sbjct: 181 DPSIVEVYISALRRKI-DAPFGRASLVTVRGAGYRL 215


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR A+  T   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR+++++RR
Sbjct: 64  LCRRLR-ARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S++  GD+ ++ D   V   G  I L   EY+++E          ++E  L+ 
Sbjct: 123 ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++ GRD   + + +DV I +LR KL N  G  + I TV G GY L E     T
Sbjct: 183 VW-GRDVYIDERTVDVHIGRLR-KLLNPDGELDPIRTVRGAGYALDEQFASRT 233


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++AL   +   L+ + ++V     G+D     K +  D I+LD  L  + G E
Sbjct: 4   RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR 
Sbjct: 64  LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     +++  GD+ ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + GRD   + + +DV I +LR KL N    ++ I TV G GY L
Sbjct: 184 W-GRDIYIDERTVDVHIGRLR-KLLNLGREQDPIRTVRGAGYAL 225


>gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +    + + + V     G +  +  +  E D I+LD+ +  I G +
Sbjct: 4   KILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIR-PEPDIILLDINMPGIDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K+  P+  L+     +D+V GL SG DDYI KPF+ +EL ARI A ++R   
Sbjct: 63  VCRQIR-DKVMCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAHLKREER 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            RG  +   + G L +N  AKTV +  + I LT  EY +IE LS        KE     +
Sbjct: 122 HRGQTEYRFLNG-LCINYSAKTVTIGENEIELTKAEYDIIEFLSSNAGQVFDKERIYEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           Y    E   + I   + ++R K S A     YIETVWG GY
Sbjct: 181 YGYDAEGGSRGITELVRRIRNKFS-AYTETEYIETVWGMGY 220


>gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 233

 Score =  111 bits (277), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 118/228 (51%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV--YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           RI++I+DD  L   +   L    + V  Y   L  + IE  +  E   IILD+ +  I G
Sbjct: 4   RIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPL--EAIEALENDEPSIIILDVMMPHING 61

Query: 60  FEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           FE  +  R+ KIS  P+ +L+    + D++ GL+SG DDY+SKPF   ELVARI AI++R
Sbjct: 62  FETCK--RIRKISDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAILKR 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    + ++  G+L ++L A    + G  + LT  E  ++ L +      + ++ 
Sbjct: 120 TERQISPKKEKGILEYGNLRIDLSAGRAYLSGIPMELTQGEMSVLSLFARHPFNVMDRDA 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N L     +   + +DV + ++R KL +     +YI+TVWG GY+ 
Sbjct: 180 IQNELNGSDWDAYNRSVDVTVSRVRAKLGDDPKNPSYIKTVWGTGYMF 227


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +LL++D+ ++   +E+ L+ E F  +     GE+G+ L +    D ++LD+ L D+ GFE
Sbjct: 4   LLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +  + P+  L+  S+  DK+ GL  G DDYI+KPFN  E+VAR++A +RR + 
Sbjct: 64  VCRRLR-SFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQQL 122

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q +         G   ++  A  + V+G  +    +E+Q++  L    N   +K    
Sbjct: 123 AGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E   + V + +LR+K+        Y+ TV G GY L
Sbjct: 183 EQVWGEESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKL 228


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 11/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA----IILDLGLTD 56
           ++IL+++D+  +   ++  L   +   Y+    EDG E  K ++ +     I+LD+ +  
Sbjct: 4   IKILVVDDEARMRKLVKDFL---SIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GFEVL A+R      PV +L+  S   D++ G + G D+YI+KPF+ + LVAR+ A++
Sbjct: 61  MDGFEVLEAIRQYS-KVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVL 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR+ G  +  +V G + V+  A++V +    + L+ KEY+++      K   L++E  L+
Sbjct: 120 RRTVGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     + + ID  + KLR K+       +YI+TVWG GY
Sbjct: 180 SVWNYDYFGDARTIDTHVKKLRAKMGERG---DYIKTVWGMGY 219


>gi|303229207|ref|ZP_07316008.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231556|ref|ZP_07318285.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513802|gb|EFL55815.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516220|gb|EFL58161.1| putative Sensory transduction protein regX3 [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 109/201 (54%), Gaps = 7/201 (3%)

Query: 25  FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSI 84
           ++V V + G DGIE       D IILD+ L ++ GFEV RA+R  K+  P+ +++     
Sbjct: 27  YDVTVMNNGTDGIEAALNTPVDLIILDVMLPEMDGFEVCRAIR-DKVRVPIVMVTARLDD 85

Query: 85  EDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV------TGDLSVNLDA 138
            DK+RGL  GADDYI KPF+   L+A+I+A++ + +   +  +V      +GD+ ++   
Sbjct: 86  IDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKRLTEKDVVDTNAIQSGDIRLDPKM 145

Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198
             V V    +HL  KE+Q++E L   ++   +KE   + ++      +   + V I +LR
Sbjct: 146 MKVWVNDKEVHLKKKEFQLLEFLMRNRDIVFSKEELYSRVWGLDSYGDYATVAVHINRLR 205

Query: 199 KKLSNAAGGKNYIETVWGRGY 219
           +++        +I TVWG GY
Sbjct: 206 EEIEENPSDSKHIITVWGVGY 226


>gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
 gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAVIAELEKDYLEVAGYTVDIDYSGEKGLQSVLLKDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V +  +R K+      K+YIET+WG GY
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGY 225


>gi|157374120|ref|YP_001472720.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316494|gb|ABV35592.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 237

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLISYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKLP-DYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRNAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G LS++   + + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPKVESHCLSFGKLSIDPHTQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +DG+D    + IDV + +LRKKL +       I+TVWG+GY+    A
Sbjct: 188 LNIDFDGKD----RKIDVRVSRLRKKLGDNIETPFRIKTVWGQGYLFAPEA 234


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L+ + F V     G++ +      + D ++LD  L  + G EV
Sbjct: 24  VLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIEV 83

Query: 63  LRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            R +R  K  T   P+ +++     +D VR L +GADDYI+KPFN + L ARIRA++RR 
Sbjct: 84  CRQIR-RKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ ++   D++++L    V      IHL   E++++E          ++E  L+ +
Sbjct: 143 SPVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK + N  G  + + TV   GY L
Sbjct: 203 WGTDIHVEPRTVDVHIRRLRKAV-NGEGEVDLVRTVRAAGYAL 244


>gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 238

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+++ + V     GE+G+ L      + ++LD+GL D  G E
Sbjct: 12  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIR+++R++  
Sbjct: 72  VLREIRQWS-NVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQAGA 130

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 131 GSTVEESVFDDGRLHIHLGLREVTLHGEAVPLSRKEYALLALLLKHAGRVVTQPQLLREV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 191 WGPTHEEDTHYLRILVGKLRQKLQDDAADPHYIVTEPGVG 230


>gi|229821647|ref|YP_002883173.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567560|gb|ACQ81411.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 218

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED + ++  +   L++  F   V     +  +L    +FD ++LDLGL D  G  
Sbjct: 3   QILIAEDSERISAFVAKGLRAAGFVPTVVPTAREAFDLASTGDFDLLVLDLGLPDGDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR       V IL+   S+ D V GL+ GADDY++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRRLRAQGNPIAVVILTARDSVTDTVAGLEGGADDYMAKPFRFEELLARVRLRLRGAVA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G+L ++L ++   V G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 123 DEPTVLRHGELELDLRSRRARVDGREVDLSAREFALAETFLRHPGQVLSREQLLSRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DV++  LR+KL     G + + TV G GY L
Sbjct: 183 DFDPGSNVVDVYVRYLRRKL-----GADLVTTVRGMGYRL 217


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 10/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           ++IL+ ED+  L + +   LKSE ++V   + GED ++  KFY   F  ++LD+ +    
Sbjct: 24  IKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALD--KFYSDNFSLVLLDIMMPKRD 81

Query: 59  GFEVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           G EV   +R  K+S  P+ +L+  ++  D++ G Q GAD+YISKPF+ + LV R+++I++
Sbjct: 82  GLEVCAEIR--KLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILK 139

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+     S    G+L ++    +V V   RI LT +EY ++  L   KN  L +E  L  
Sbjct: 140 RAGLLQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQA 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    E +++ +D  I  LR K+    G + YI+T+   GY
Sbjct: 200 VWGMDYEGDIRTVDTHIKCLRIKI---PGAQEYIKTIRKIGY 238


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+++D++ +   I+   + E   V     G D +E  +  +FD I++D+ +  + GF
Sbjct: 2   FKILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + ++  K + PV +LS      DK+ G + G DDY+ KPF+ +EL+AR+  IV R++
Sbjct: 62  SAYKEIKKTK-NIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNK 120

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  + L ++LD ++V V G R+ LT KEY+++  L+  KN  L++E  LN ++
Sbjct: 121 KLNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +D  I  LR  + +    + +I TV G GY   E+
Sbjct: 181 GYDFYGDDRTVDTHIKMLRNSIKHY---RKFIVTVRGVGYKFEED 222


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+ +DD  +   I L LK   ++V   + G++ I L +  + D I+LD+ + DI G+
Sbjct: 4   IKVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K + P+ +L+      D+V GL+ GADDY++KPF+  E+VARI+AI RR  
Sbjct: 64  EVCKEIR-KKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMP 122

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               +              S+ +D + V   G ++    KE+ ++  L        T+E 
Sbjct: 123 ALTNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV I ++R +   A      I TVWG GY    N K+
Sbjct: 183 LLQKVWGFDFAGDVRTVDVHIKRIRDEF--AKHQILCIHTVWGVGYQFHINKKE 234


>gi|240169880|ref|ZP_04748539.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           kansasii ATCC 12478]
          Length = 226

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     +  D +ILDLGL DI G +
Sbjct: 3   RVLVIDDEPHILRALRINLTVRGYEVITASTGAGALRAAAEHPPDVVILDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNAA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q ++ T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASEVDQPVVETDAFTVDLAAKKVTKNGAEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGY 222


>gi|258511937|ref|YP_003185371.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478663|gb|ACV58982.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L+ ++  +L+ E+F V V   GE+G+ L +   +DA+++D+ L  + G+
Sbjct: 1   MRILLVEDDRGLSDALAELLREESFQVDVAHDGEEGLYLAETAVYDALVVDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  ++  PV  L+ +  ++ +V+GL +G DDY+ KPF  EE +AR+RA++RR+R
Sbjct: 61  DLVRTLRDKRVHVPVLFLTALGDVDHRVQGLNAGGDDYLPKPFATEEFLARLRALLRRNR 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + + +G L ++  A+        I L+ KE+ ++E L   +   L +E   N ++
Sbjct: 121 ELGTDMTLRSGLLVLDPLARRAAFGNEPIKLSDKEFDLLEYLLSHRGQILMRERIFNRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +     +D+++  LRKKL    G    I TV   GY+
Sbjct: 181 GIDSDVMDTTVDLYVHYLRKKL-QPFGYDTAIRTVRNVGYM 220


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  + L L++ENF V+      D ++  +    D  ILD+ + D+ G E
Sbjct: 4   KILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  +   PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  LCRNIR-EQYRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  + +IV   L +N+      +    + LT  E+ ++ +L  +K   ++ E   
Sbjct: 123 YNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEELF 182

Query: 176 NHLYDGRDEPEVK---IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + +++  DE   K    I V I  LR+K+ ++     YI+TVWG GY
Sbjct: 183 HEIWN--DEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGY 227


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     V V + G+ G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R      +PV +L+ + + +D V GL +GADDY+ KPF+ +EL ARI+A++RR+ 
Sbjct: 63  LCKQYRQTYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLRRTG 122

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  L+  GDL+++  +         I LT KEY+++E L   + T  ++   L +++
Sbjct: 123 AEPAVPLLSCGDLTLDPSSHRAIRGKVVIDLTVKEYRLLEYLIRNRGTAQSRLTLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 DKNFDTNTNVVDVYVNYLRSKIDKDFDRK-LIRTVVGVGYMM 223


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-KESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  ++++   
Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|90411455|ref|ZP_01219466.1| DNA-binding response regulator [Photobacterium profundum 3TCK]
 gi|90327668|gb|EAS44011.1| DNA-binding response regulator [Photobacterium profundum 3TCK]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL+IED+K +   + ++     ++V   D G+DG+     ++ + I+LDLGL D  G 
Sbjct: 7   FKILIIEDEKPIQRFLSILTSGHGYDVKSADNGKDGLWHVVNWKPNLILLDLGLPDTDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR     TP+ ++S      +KV+ L  GA+DY++KPF  EEL+ARIR  +R   
Sbjct: 67  DFTRQLRTW-TETPIIVISARDKESEKVQALDVGANDYLTKPFGSEELLARIRVALRWVT 125

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              Q  I     G+++++L  + +      +H+T  EY+++ LL+      LT +  L  
Sbjct: 126 SSEQQDITEYRFGNITIDLVMQQITRDDELLHVTPTEYKIVTLLAKNMGKVLTHKQILKD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + V + +LR K+        Y+ T  G GY L
Sbjct: 186 VWGDNYSEHSHYVRVHVAQLRHKIEAVPAQPKYLITETGVGYRL 229


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 11/244 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V + LR     A+I  PV +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++R
Sbjct: 63  VCQRLRRDERTAEI--PVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+    Q+     ++  G L++  +          + LT  E++++  L  R   T++  
Sbjct: 121 RTDRIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             L  ++    + +++ I V I  LR KL        YI+TV+G GY L   +   + E 
Sbjct: 181 EILREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPSSAEG 240

Query: 233 LETA 236
             T+
Sbjct: 241 ASTS 244


>gi|28210587|ref|NP_781531.1| two-component response regulator [Clostridium tetani E88]
 gi|28203025|gb|AAO35468.1| two-component response regulator [Clostridium tetani E88]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 11/223 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ ++  ++  L  E + V  T  G +GIE+ K   F  IILDL L DI G EV
Sbjct: 5   ILIIEDEEKVSSVLKAYLGKEGYKVISTTSGIEGIEIFKKGNFKLIILDLMLPDIEGEEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+    + +++ GL  G D+Y+ KPF+  EL AR+ A+ RR  G 
Sbjct: 65  CKIIRGIS-DVYIFMLTAKGDLSNRIEGLNIGGDEYLVKPFSPRELTARVNALFRRIGGE 123

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
            + ++    G+L +N   + VE++   + LT  E+Q++  L+  K    T+EM +N    
Sbjct: 124 DEEILSFNNGELKINKIKRIVEIEKRDVKLTPNEFQILYALASNKGKVFTREMLINSALG 183

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + G D    + +DV +  +RKK+   +    Y+ TV   GY
Sbjct: 184 LDFQGFD----RTVDVHVKNIRKKIEKDSRNPKYVLTVTRVGY 222


>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD+A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L +E F V     GE  +     +E   I+LD+ +  + G 
Sbjct: 7   IRVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L+       V +L+    I+D+V GL +GADDY++KPF+ EEL+ARI+A +R   
Sbjct: 67  AVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +   G  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E  I++V+I  LR+KL +       I T+ G GY
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGDKE--HRVIRTLRGAGY 223


>gi|296447182|ref|ZP_06889113.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296255347|gb|EFH02443.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++EDD  +   +   L+ E F + V  D      EL +    D +ILDL L    G  + 
Sbjct: 1   MVEDDPEIGRLVGDFLRREGFELIVAPDAAAMDAELSRARP-DLVILDLMLPGEDGLSIC 59

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R LR A+ + P+ +L+  S   D+V GL+ GADDY++KPF   EL+AR+RA++RR+    
Sbjct: 60  RRLR-ARDTIPILMLTAKSDEIDRVVGLEMGADDYLTKPFGPRELLARVRALLRRAHAAP 118

Query: 122 --HAQSLIVTGDLSVNLDAK---TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A   +      ++LDA+   T+E Q   I LT  E+ ++   +      LT++  L+
Sbjct: 119 TRPASRRLAFDRFILDLDARDCETIEPQRSEIALTSAEFDLLACFAQHPRRVLTRDQLLD 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +    +P  + ID+ + +LR+KL  A    + I TV   GY+LR   +
Sbjct: 179 WTHGRAADPFDRSIDMLVSRLRRKLDAAGASGDLIATVRNGGYLLRAEVR 228


>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ L  ++      E + V V+  G +G+   +    D ++LDL L  + G +
Sbjct: 5   RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  + +   P+ +++  +   D+V G   GADDY+ KPFN + L+ +++A++RR+
Sbjct: 65  VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRRA 124

Query: 120 RGHAQSLIVTGDLSVNLD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G ++   VT    V +D     V  +   + LT  E++++E L  +     +++  +  
Sbjct: 125 QGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRKQLMEA 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                     + IDV I  LR+KL+ A G  + IETV   GY  RE+  D
Sbjct: 185 AIGDNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRFREDKLD 234


>gi|152981368|ref|YP_001353509.1| two component system transcriptional regulatory protein for
           high-affinity potassium transport system
           [Janthinobacterium sp. Marseille]
 gi|151281445|gb|ABR89855.1| two component system transcriptional regulatory protein for
           high-affinity potassium transport system
           [Janthinobacterium sp. Marseille]
          Length = 232

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+ED+  +   +   ++ E ++VY  +  + G+      + + IILDLGL D  G + +
Sbjct: 9   LLVEDEPQIRRFVRAAMEEEGWHVYEAETMKRGLIDAGTRKPNLIILDLGLPDGDGMDFI 68

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
             +R A    P+ +LS   S  DK++ L +GADDY+ KPF   EL+AR+R+ +RR R   
Sbjct: 69  ADIR-AWSPVPIIVLSARVSEGDKIKALDAGADDYLIKPFGVGELLARVRSTIRRHRRVD 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ     GD+ V+L+A+ V      +HLT  EY+++ +L       +T    L  ++ 
Sbjct: 128 GDAQGSFSFGDVKVDLNARLVTKANQMVHLTPTEYRLLSVLVANAGRVVTNPQLLREVWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL +      Y+ T    GY L
Sbjct: 188 PSHSESGHYLRIYMGHLRQKLEDDPAQPRYLLTETAVGYRL 228


>gi|317494749|ref|ZP_07953161.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917351|gb|EFV38698.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 232

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F+V V   GE  +EL        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFSVVVAHDGEQALELLDSSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKEVRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q          +    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQSNESNAPTLEVDHLLLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGQPWFKTLRGRGYLM 228


>gi|264680342|ref|YP_003280252.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532693|ref|ZP_07046081.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262210858|gb|ACY34956.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719328|gb|EFI60297.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 14/215 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  I+L L    + V      E  +E+     FD  ++D+GL  I G 
Sbjct: 1   MRLLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGLPGINGL 60

Query: 61  EVLRALRVAKIST---PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           E+ R LR + + +   PV IL+   +++D+V+GL  GADDY+ KPF   EL+AR+RA++R
Sbjct: 61  ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTV---------EVQGH--RIHLTGKEYQMIELLSLRKN 166
           RS+    +++  G + ++   +           E +G    I L  +E+ ++E L L   
Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGKLLPIDLGPREWTVLEYLLLNAP 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKL 201
              +KE  L  L     E     ++V++ +LR KL
Sbjct: 181 KPASKEKLLQALTGWDREITPNAVEVYVSRLRSKL 215


>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
 gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
          Length = 245

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   IE+ L+ E F V     G + + +    +   +ILD+ +  + G EV
Sbjct: 19  ILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIMMPAMDGIEV 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R  + + PV  LS  ++  DKV GL +GADDYI+KPF+  ELVAR++A +RR    
Sbjct: 79  CRRIR-ERHTIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTYF 137

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  H   + + G L ++  ++ V +    I+LT  EY ++ L++  +N   T E  
Sbjct: 138 NHMPSEVHKNKIKIRG-LEIDELSRKVMLYEKAINLTKTEYDILHLMAKNRNRVFTLEEI 196

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++  R       + V + +LR K+         I+ VWG GY
Sbjct: 197 YESIWRERAHESNNTVMVHLARLRNKIEENPKKPTVIQNVWGVGY 241


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 16/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L    + V     GE  +E+      D ++LD+ L  + GF V
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A+   P+  L+ + +I ++V GL  GADDY++KPF+ +EL ARI  I+RR  G 
Sbjct: 64  CRRIR-AESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRV-GP 121

Query: 123 A------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           A            Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 120/230 (52%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A  S PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-ATSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGNDQ 122

Query: 123 AQS-------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           A +             ++  G + ++++   V V G  + +  KE+ ++E L       L
Sbjct: 123 ASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           T+   ++ ++      + K +DV I +LR K+        ++ TV G GY
Sbjct: 183 TRGQLIDRIWGADYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGY 232


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDYI+KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 V      DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    Y+G D    + ID  I  LR+K+ +      YI TV+G GY
Sbjct: 183 VMGFDYEGYD----RTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGY 224


>gi|156935481|ref|YP_001439397.1| DNA-binding response regulator CreB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533735|gb|ABU78561.1| hypothetical protein ESA_03340 [Cronobacter sakazakii ATCC BAA-894]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + L+ED+ +++ ++  +++ E F V   + G   ++  +    D ++LD+GL DI GFE+
Sbjct: 6   VWLVEDETSISEALSYVMQLEGFTVRTFERGLPALDAARQTLPDLVVLDVGLPDISGFEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R L  A  + PV  L+  S   DK+ GL+ GADDY++KPF+  E+ AR+R I+RR    
Sbjct: 66  CRQLLAAHPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQ 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            RG AQ+++  G   +N +A  +   G  + LT  EY +++ L L      +++  ++ +
Sbjct: 126 QRG-AQTVVRVGRFELNDEAAHIAWCGQPLSLTRYEYLLLKTLLLAPGRVYSRQQLMDIV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++   + +D  I  LR KL       + + T  G GY L  N
Sbjct: 185 WGDANDSFDRTVDTHIKTLRAKLRAVNPDVSPVNTHRGLGYSLAVN 230


>gi|2981051|gb|AAC06222.1| response regulator [Pseudomonas aeruginosa PAO1]
          Length = 239

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD  L   +   L    F V     G +G+   +   +D I++D+ L    G E
Sbjct: 10  RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGPEGLAAARSGGYDLILMDIMLPGRDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR  R  + + PV ++S + + +D++ G   GADDY+ KPF+  EL  RI AI+RR   
Sbjct: 70  ILRQRRQEQ-ALPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRRIAL 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +    L  + D   V +      LT  EY+++E     +  TLTK   
Sbjct: 129 ERGGAPGRCAEPLARPSLQFSADVCDVSLGERFAGLTPTEYRLLETFLAAEGETLTKAFL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             H+         + +D+ +  LR+KL       + + TVWG+GYVL
Sbjct: 189 YQHVLHRGHTQHDRSLDMHVSHLRRKLQRLGYAGHQLHTVWGKGYVL 235


>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           +L+++D + +  ++ + L  E ++V + + G   ++L +  +  D I+LDL L  + G +
Sbjct: 10  VLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNGLD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R LR    + P+ +L+   +  D+V GL+ GADDY+ KPF   EL+AR RA++RR +R
Sbjct: 70  LCRLLRREGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLRRHTR 129

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              Q   +++  GDL +N     V V+   + L+ KE++++EL         ++E  +  
Sbjct: 130 TQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSREQLIER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 190 VWGPDFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGY 231


>gi|30248940|ref|NP_841010.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138557|emb|CAD84848.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 245

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 120/219 (54%), Gaps = 3/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D   L  ++   L+++NF +     GE  +EL    ++D +ILD  L  + G 
Sbjct: 21  IRVLIVDDHIDLISNVFAYLENKNFILDAARDGESALELSSNGQYDVLILDWMLPRLNGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A + TP  IL+  S I DK+ G  +GADDY++KPF   EL ARI A+  R  
Sbjct: 81  QVLQRLRAADVDTPTLILTAKSDIPDKLSGFAAGADDYLTKPFLIAELEARILALHTRRI 140

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ L V G L  +L ++ V   G  IHL     +++++L       +TK+   + L+ 
Sbjct: 141 GRAKILRV-GSLIYHLTSQQVMRDGSIIHLHSGSRKLLQVLMRESPNVVTKDRLESLLW- 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           G D P+  ++   I +LRK +      K +++TV   GY
Sbjct: 199 GEDRPDRDLLRTHIYELRKSIDGDYPLK-FVQTVPKVGY 236


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 24  ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 84  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 143

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 144 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 204 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 246


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    + ++LD+ +  + G+
Sbjct: 4   ISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKMDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R AK   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR  
Sbjct: 64  EVTRQIR-AKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++S +  G + ++ + +TV V G  I LT KE+ ++ +L+       + E 
Sbjct: 123 TLNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVEN 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 183 IFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|206579850|ref|YP_002238495.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|206568908|gb|ACI10684.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
          Length = 231

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  L+ EN++V +T  G  G+++   ++ D I+LD+ L  + G E
Sbjct: 5   RVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR  K   PV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RRS  
Sbjct: 65  VLAGLR-RKNDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNQ 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R  +  + VT  ++  +D  T       + LT  E+ ++  L    +   ++
Sbjct: 124 TETKEEILRWQSLEVNVTAIVASIIDGDTTP---RTLDLTPTEFSLLTTLMRSPSRPFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  L H     +  E +++D  I  LRKKL  AAG    +  V G GY  R+
Sbjct: 181 QHLLEHCLPESEALE-RVVDTHIYNLRKKL-EAAGISGVLVNVRGVGYRFRQ 230


>gi|119716238|ref|YP_923203.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536899|gb|ABL81516.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 126/222 (56%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +   L+++         G +G++L    + D ++LD+GL  + GFE
Sbjct: 3   RILIVEDEERIASFLAKGLRADGHVTTCVADGREGLDLALGGDVDLVVLDIGLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR    + PV +L+   S+ D V  L+ GADDY+ KPF   EL+AR+R  +R+S  
Sbjct: 63  VLDQLRSQGSTVPVIVLTARDSVGDTVSALEGGADDYMPKPFRFAELLARVRLRLRQSAD 122

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G A  + ++ +G + +++  +   V+  ++ L+ +E+ + E+  +     L++E  L+H
Sbjct: 123 AGGASREDVLQSGRVKLDVRTRRAVVEDRQVDLSAREFSLAEIFMVNAGQVLSREQLLDH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    +P   ++DV++  LRKKL     G + I TV G GY
Sbjct: 183 VWGMDFDPGSNVVDVYVGYLRKKL-----GADTIATVRGMGY 219


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 126/233 (54%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        +Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 122 IETAVAEENASSGSQELTI-GNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 181 TREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|253682284|ref|ZP_04863081.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253561996|gb|EES91448.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 227

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 10/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   I++ L+ E+F V  +  G D + +      D IILD  L DI GF
Sbjct: 1   MKILVVDDEISILQLIKMTLELESFEVITSKTGLDSLNIIIKENIDLIILDAMLPDISGF 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++   ++  IS  P+ +L+    I DK+ GLQ GADDYI+KPFN  EL+ RI+ I +R 
Sbjct: 61  NLIA--KIKNISDIPIIMLTAKDDINDKLLGLQLGADDYITKPFNSTELILRIKIISKRM 118

Query: 120 RGH---AQSLIVTGDLSV-NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +    ++ ++ G L +   + K +      I LT KE++++  L   K    ++E  L
Sbjct: 119 NKNIIQEKNELLVGKLKILKKERKLIIDSKDEIVLTYKEFEVLNCLCENKGKVFSREELL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++    E   + +D+ I +LRKKL      +NYI+T++  GY L
Sbjct: 179 SKVWGYDFEGTTRAVDILIQRLRKKLGKY---QNYIKTLYKAGYKL 221


>gi|71906343|ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845964|gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 226

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++DD  L+  +   L  + F       GE G+       +  + LD+ +  I G EV
Sbjct: 4   ILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R A  + PV +L+      D++ GL+ GADDY+ KP    EL AR+RAI+RR+   
Sbjct: 64  LRRIR-AVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTTLV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   IV G L+V  + + VE  G  + +T  E+ ++E+L+      ++K +       
Sbjct: 123 EAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLCEQAL- 181

Query: 181 GRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           GR      + IDV +  +R KL N   G++ I+TV+ +GY L
Sbjct: 182 GRPLARFDRSIDVHLSSIRHKLGNLPDGRSCIQTVYRQGYQL 223


>gi|89074320|ref|ZP_01160802.1| transcriptional regulator [Photobacterium sp. SKA34]
 gi|89049807|gb|EAR55348.1| transcriptional regulator [Photobacterium sp. SKA34]
          Length = 223

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 116/205 (56%), Gaps = 3/205 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED  AL  S+ +   +  F++   + G++G+ L    ++D IILDL L  I G 
Sbjct: 1   MKILIIEDSSALRRSLAVGFHNLGFSIDEAENGKEGLTLALDNDYDIIILDLMLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   I T + ILS  +  +D++ GL  GADDY++KPF+ +EL AR+ AI RR +
Sbjct: 61  TILNKLRQTGIETRIIILSAKTQSQDRIDGLMQGADDYVTKPFSFDELHARVVAISRRCQ 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A ++ + G L ++L+ KT+    + + LT  E+++I+ L   +   LT  M  +++
Sbjct: 121 PVSIANTIEIEGFL-LDLNNKTLFYGNYDLDLTPNEFKIIDYLFNHRGQILTASMISDNI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN 203
            +  D      I+V I  +RKK  N
Sbjct: 180 TNNFDYISKNTIEVHISSMRKKSKN 204


>gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
 gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR
           [Grimontia hollisae CIP 101886]
          Length = 240

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L+ E + V + + G++G++     + D ++LD+ +  + G E 
Sbjct: 13  ILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISD-QTDLVLLDVMMPVLNGMET 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR +   TPV +L+      D+V GL+ GADDY+ KPF+  EL+AR+RAI+RR+  H
Sbjct: 72  LRRLRDS-WETPVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILRRTAKH 130

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +          +V  D+ +      V  Q   I +TG E  ++  L  +    + K   
Sbjct: 131 GEGKRSEEPNDKLVYQDIVIYPGKMEVYCQAQLIDMTGTETALLAYLIKQPGCVVAKADI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++   R  P  + ID+ I  +RKKL     GK  I+T+ GRGY+L E
Sbjct: 191 SLNVLGKRLAPFDRAIDMHISNIRKKLPEREDGKPRIKTLRGRGYLLVE 239


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   ++  ++ ENFNV     GE+ +     Y    ++LD+ +  I G EV
Sbjct: 5   ILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLIDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+A++RR    
Sbjct: 65  CNRIR-EKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITPV 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S++    + ++++  +V++ G  I+LT KE +++ +L+   N  + ++  L++++
Sbjct: 124 ENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +D  I ++R KL+        I+T+WG GY
Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGY 223


>gi|241664878|ref|YP_002983238.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|240866905|gb|ACS64566.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 221

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++E  L+   + V     G+  +++     +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGAAVEAALQDAAYAVDWVRNGQTALDVAAHQHYDLLLLDLGLPGKDGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL +LR      PV IL+   +++++VRGL  GADDYI KPF   EL+AR+RA++RR  
Sbjct: 61  AVLGSLRARDNPVPVLILTARDAVDERVRGLDGGADDYILKPFEMVELLARMRAVLRRKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  ++  G L+++  A    +  G  + L+ +E+ +++ L LR    L++      +Y
Sbjct: 121 GAASPVLTNGVLTLDPAAHEARMGDGEPVRLSAREFALLQALMLRPGAILSRTELEERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E     ++  I  LRKKL     G   I+ V G G+++
Sbjct: 181 GWGHEVASNAVEFLIHALRKKL-----GAQAIKNVRGVGWMV 217


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 13/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +   I + LK+E  NV+    G + +E     +   ++LD+ +  + G + 
Sbjct: 7   VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R A+ + P+  LS  S   DKV GLQ G DDY++KPFN  EL+AR+++ +RR    
Sbjct: 67  TLKIREAR-NIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + LI    ++++LDAK V+  G  + LT  EY++IELL        +       
Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185

Query: 178 LYDGRDEPEVK----IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +EP  +     + V I K+R+K+        +++ VWG GY
Sbjct: 186 VW---NEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGY 228


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++ +  +  L+   + V     G +G+++    E D I+LDL L  + G E+
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K    + +L+  S   D+V GL+ GADDY++KPF+  ELVAR+ AI+RR RG 
Sbjct: 65  TARLR-EKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    + ++ DA+     G  + LT  E+ ++  L+   N  L++E  +  ++ 
Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  +++DV++ ++R+K+  A  G+N I T  G GY
Sbjct: 184 ADFYGTDRVVDVYVSQVRRKI-EALTGENLIRTARGVGY 221


>gi|49081810|gb|AAT50305.1| PA4885 [synthetic construct]
          Length = 230

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D +ILD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLR-KKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++DV I +LR K+ N    K  I TV G GYV  E
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDNPFPNK-LIHTVRGIGYVCEE 221


>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 235

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F+V ++  G++G  +    ++  ++LD+ L    GF 
Sbjct: 3   KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + RA+R  ++  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVR-KELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 120 -RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +G   +  ++   G L +      V V G  +HL  +E++++  L+       +KE   
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++D         + V + +LR+K+        +++TVWG GY     A+
Sbjct: 182 DRVWDLEAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   ++L L+ E F       G +G+   K    D IILDL L ++ G E
Sbjct: 10  KILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGLE 69

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R+ + +   P+ +L+  +   D V GL+ GADDY++KPF+ + LVAR++A++RR 
Sbjct: 70  VCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRRL 129

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +A   Q+    G L+V+L    V + G  + LT KE+ ++E L       LT+++ L+
Sbjct: 130 ERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLLS 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++        + +DV + +L++KL       + I ++   GY LRE+
Sbjct: 190 AVWGYDYYGTTRTVDVHVRRLKQKLPLL---DDAIISIKSLGYKLRES 234


>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
 gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIR-EKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQSLIVTGDLSVNL-------DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q  +   +  +N+        ++TV +    I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGY 238


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK +   +E+ LKS+ + VY    G +G+E+ +  +    I+D+ +  + G  +
Sbjct: 6   VLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMDGITM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R  
Sbjct: 66  VVRLR-EKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRKF 124

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+ L          V G L +N D     V G  + LT  EY+++ LL        + E 
Sbjct: 125 AEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++ R       I V I  +R+K+        Y++ VWG GY + + A
Sbjct: 185 IYERVWNER-AITTDTIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235


>gi|209516071|ref|ZP_03264931.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209503531|gb|EEA03527.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 231

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD ++A ++   L++  + V V   G  G+++     +DAI+LDL L  + G 
Sbjct: 3   MKVLIVEDDSSIAANLYDYLEAGGYEVDVASNGNAGLQMALADSWDAILLDLSLPGMDGL 62

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR  A   TPV +L+   +++DK+ G   GADDY+ KPF+ +E+ AR+ A+++R 
Sbjct: 63  TLCRRLREEAGRDTPVLMLTARDALDDKLAGFVHGADDYLVKPFSLKEVGARLGAMIKRY 122

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           RG   ++ +   D+ ++L   TVE  G  + L  K   ++ +L      T T+    + +
Sbjct: 123 RGQVAAMELRFADVRLDLSTMTVERAGRAVKLPPKCLHLLRILMQSPRRTFTRAELESDV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + G + P+   +   +  LR+ L    G  + IET+ G GY L  +  D
Sbjct: 183 W-GEELPDSDTLRTHVYTLRRAL-RGPGETDVIETLHGVGYRLVASGDD 229


>gi|270307537|ref|YP_003329595.1| DNA-binding response regulator [Dehalococcoides sp. VS]
 gi|270153429|gb|ACZ61267.1| DNA-binding response regulator [Dehalococcoides sp. VS]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+IL+IED+K +   I L  +       + +   GEDG+EL +    DA+ILDLGL DI 
Sbjct: 1   MKILVIEDNKDIIDFISLAFQVGWPGIKLEIARRGEDGLELIEKEAPDAVILDLGLPDID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFEVL+ +R+     PV IL+      D VRGL+ GAD+Y++KPF + EL+AR+RAI+RR
Sbjct: 61  GFEVLKRMRLFS-QIPVIILTVRKEELDIVRGLELGADEYMTKPFGQMELLARLRAILRR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK----EM 173
                 +  I+ G    +     +      I LT  E  ++  L++     ++     E 
Sbjct: 120 QNVMTEEPSIIAGPFRFSCYMHKLHYNNREIPLTTTEGMILHHLAVNSGNVISHTSLAET 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                YDG  +     + V+I +LR+K+         I T  G GY+L +N
Sbjct: 180 VWGEEYDGASDS----LKVYIHRLREKIEEDPSNPKIIITKSGVGYMLMKN 226


>gi|86360102|ref|YP_471991.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86284204|gb|ABC93264.1| probable two-component response regulator protein [Rhizobium etli
           CFN 42]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L  E ++V     G   I        D I+LD+ +  + G E
Sbjct: 3   KVLLIDDDAELTTLLQEYLVEEGYDVATDTDGRAAIAAAAGNTVDIIVLDIMMPRMNGIE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           VL+  R+ K+S  PV +L+      D++ GL  GADDY+ KP +  EL AR+RAI+RR+ 
Sbjct: 63  VLQ--RIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G +   I  G L ++  +++ E +G  + LTG E+ ++E+L+      ++K+    
Sbjct: 121 QPAAGASTDTITAGQLVIHSGSRSAEWRGEALELTGTEFGLLEVLARSAGQLVSKQDISK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     P  + IDV I  +R+KL     G+++I++V G+GY L
Sbjct: 181 RAFGKPLTPFDRRIDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 224

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +EL L  +  +V     GE+ ++  +    + +ILD+ L  I G EV
Sbjct: 4   ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVMLPGIDGIEV 63

Query: 63  LRALRVAKI-STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R  R+ KI S PV +L+ +    D V GL++GADDY+ KP     L ARIRAI+RR   
Sbjct: 64  CR--RIRKIDSLPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRRVES 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++  A  V ++G  +HLT  E +++  L   ++  L +   L  ++D 
Sbjct: 122 VPADRLTFGDLVIDRGALKVTLKGKEVHLTPTELRLLLELVRHRDKVLNRRYLLRTVWDH 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + +++D  + ++R K+        YI TV G GY
Sbjct: 182 GHVGDSRLVDTCVQRIRAKIEPVPSEPRYIHTVRGFGY 219


>gi|260425623|ref|ZP_05779603.1| protein PetR [Citreicella sp. SE45]
 gi|260423563|gb|EEX16813.1| protein PetR [Citreicella sp. SE45]
          Length = 234

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L    F V           L +  EFD I+LD+ +    G  +
Sbjct: 8   ILIVDDDERIRGLLQKFLIRHGFLVSAARDAAHARRLLEGLEFDMIVLDVMMPGEDGVSL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            RA+R     TP+ +L+     ED+++GL++GADDY++KPF  +EL+ RI AI+R     
Sbjct: 68  TRAIRERGSRTPIMLLTARGETEDRIKGLEAGADDYLAKPFEPKELLLRINAILRRVPDT 127

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+   A  L+  G +  +++   +      + LT  E Q++ + S +    L++   +  
Sbjct: 128 RAEEAAPKLLTLGPIRYDIERGEMWRGEELVRLTATESQLMRIFSAKPGEALSRTKLVEE 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L   + + + + +DV I +LR+K+ +      Y++TV G GY+L
Sbjct: 188 LGRDKGQAQERAVDVQITRLRRKIESDPKQPRYLQTVRGAGYML 231


>gi|260576296|ref|ZP_05844288.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021564|gb|EEW24868.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 233

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 126/232 (54%), Gaps = 20/232 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L++DD+ +  S+ + L++E F V   + G+  ++       D  +LD+ +  + G +
Sbjct: 3   RIALVDDDRNILTSVSMTLEAEGFEVETYNDGQSALDAFNRRLPDMAVLDIKMPRMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR  K + PV  L+      D+V GL+ GADDY+ KPF++  LV RIRA++RR   
Sbjct: 63  LLQRLR-QKTTMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRR--- 118

Query: 122 HAQSLIVTGDLSVNLDAKTVE--------------VQGHRIHLTGKEYQMIELLSLRKNT 167
             Q  I TG+++V  + K +E               +G+ + LT  E+ +++ L+ R   
Sbjct: 119 --QDAIATGEVAVTEETKIMERGYLRMDPLRHSVAWKGNDVSLTVTEFLLLQALAQRPGF 176

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  ++  YD +   + + ID  I +LRKK+ +A    + IET++G GY
Sbjct: 177 VKSRDALMDVAYDDQVYVDDRTIDSHIKRLRKKMRSADAEFSAIETLYGIGY 228


>gi|222087576|ref|YP_002546113.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725024|gb|ACM28180.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 228

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L  E ++V     G   I        D I+LD+ +  + G E
Sbjct: 3   KVLLIDDDVELTTLLQEYLAEEGYDVSTDTDGRAAIAAAAGNTVDIIVLDIMMPRMNGIE 62

Query: 62  VLRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           VL+  R+ K+S  PV +L+      D++ GL  GADDY+ KP +  EL AR+RAI+RR  
Sbjct: 63  VLQ--RIRKLSPVPVLMLTARGDDIDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + G A   +  G L ++  ++T E +G  + LTG E+ ++E+L+      ++K+    
Sbjct: 121 QPTTGTATDTLRAGQLVIHPGSRTAEWRGAALDLTGTEFSLLEVLARSAGQLVSKQDISK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     P  + IDV I  +R+KL     G+++I++V G+GY L
Sbjct: 181 RAFGKPLTPFDRRIDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR ++   PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++  G + ++++   V+V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV + +LR K+        ++ TV G GY L
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKL 227


>gi|86606667|ref|YP_475430.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555209|gb|ABD00167.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 229

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      ++  L      V     GE    L +   +D +ILD  L  I G 
Sbjct: 1   MRILLVEDDLEQLEPLQAALAKCGHVVDCASEGETAAWLMEEKAYDLLILDWMLPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ +  R +    PV +L+   +  D V+GL +GADDY+ KP +  EL+AR+RA+ RRS 
Sbjct: 61  QLCQQYRRSGGCAPVLMLTAKDATSDIVQGLDAGADDYLVKPVDLIELLARVRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L ++L + T+E QG ++ L+GKE+Q++E L    +  L+       +++
Sbjct: 121 QWQGDSLSLGSLQLHLASLTLERQGRQVQLSGKEFQLMEYLMRHPHQVLSGGQIEQAVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              EPE   +   + +LR +L      ++++E+V+G+GY LR
Sbjct: 181 WGCEPESNAVAALVRRLRLRLKEVE-AQDWLESVYGQGYRLR 221


>gi|26988383|ref|NP_743808.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24983136|gb|AAN67272.1|AE016353_12 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 272

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  L   ++  L+     V     G +G+E      FD +++D+ L  + G + 
Sbjct: 44  ILAIEDDPVLGAYLQEELQRGGCQVTWCRNGLEGLETAGRQAFDVVLMDILLPGLDGLDA 103

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR    +TPV ++S + +  D++ G Q GADDY+ KPF+  EL  RI AI+RR    
Sbjct: 104 LAQLRRHS-TTPVIMMSALGAEADRISGFQRGADDYLPKPFSMAELQVRIEAILRRVALE 162

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R H   L   G   +  D +  +V+       LT  EY+++++L+   +  L+K     H
Sbjct: 163 RRHQGPLEQAGCGELQFDERLCDVRLNSRLAGLTPSEYRLLDILNRNLDEVLSKPFLYQH 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         + +D+ + ++R+KL      +  I TVWG+GYVL
Sbjct: 223 VLQRGYSRHDRSLDMHVSQIRRKLKGIGYHERQIRTVWGKGYVL 266


>gi|300717863|ref|YP_003742666.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299063699|emb|CAX60819.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G+ G+E     E++A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSQYLIAEGFDASLVLTGKAGVEGALSGEYNAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-QNCRLPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRVE 119

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  ++ L   GDL++N   +  E +     LT  E+ +++LL    +  ++K+   
Sbjct: 120 EQPVVVESKELATWGDLTLNPATRISEWKKQAFDLTASEFNLLDLLLRSPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KL+        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLAALTNETINIETVRSIGYRIR 226


>gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603]
 gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 116/218 (53%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++DD  + + +   L+ E+F  Y    GE+ +     +  D  I+D+ +  + GFE
Sbjct: 3   RCLIVDDDPKILNYVVTHLEKEHFYTYTHTNGEEALHFLDNHPVDIAIVDIMMHGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RI+A++RR   
Sbjct: 63  LCHMIKEV-YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIYRIKAVLRRYHI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           HA   +  G+L+++     V V G  + L  KE+Q++ LL+  +    ++   +  ++  
Sbjct: 122 HADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E + + IDV I +LR++L         I+TV G+GY
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSDVT-IKTVRGQGY 218


>gi|110799121|ref|YP_695585.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206260|ref|ZP_02632265.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209490|ref|ZP_02635115.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168212262|ref|ZP_02637887.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216017|ref|ZP_02641642.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182625180|ref|ZP_02952956.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110673768|gb|ABG82755.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170662235|gb|EDT14918.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712397|gb|EDT24579.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715969|gb|EDT28151.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177909639|gb|EDT72073.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381725|gb|EDT79204.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  ++ +I    K++     V D G D IE    Y FD +ILDL L    G 
Sbjct: 2   IKVLLVEDNIEISENIVEYFKNDVEIECVYD-GLDAIEYLNTYYFDIVILDLMLPGAGGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVL  +   +++T V +L+    + DK+R    GA+DY++KPF  EEL AR+  I++   
Sbjct: 61  EVLNFISKKRLNTGVIVLTAKEELGDKLRAFNLGANDYLTKPFFMEELKARVNVILKSLG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    +++    + +N+  K V +    + L  K + ++E L + K   L KE   +++ 
Sbjct: 121 KIKDSNILQFKSMEINMKTKKVFINHKELELNEKLFNLLEYLVINKGVVLFKEQLFDNIC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   +II+V++ +LRK+LS   G   YI T  G GY++ E+ +D
Sbjct: 181 GYNSDASTEIIEVYMSRLRKQLS-PFGYDKYIVTKRGMGYLIDESIED 227


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +E  L    + V     GE+ + L      D +ILD+ +  + G+ 
Sbjct: 16  KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIRA++RR+  
Sbjct: 76  VCQEIR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A S  +T         L+++L+ + +     RI LTG E+ ++ELL  R     ++   
Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194

Query: 175 LNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E  V  +++DV I +LR KL       + I T  G GY+ +
Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244


>gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 12/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVY-VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           I  +EDD+ +   +   L S  F  +   D      E+ K    + ++LD+ L    G +
Sbjct: 2   IYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRP-ELVLLDIMLPGTDGIQ 60

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR L+  + +   P+ +++   +  +KV+ L  GADDY++KPF   ELV+R+RA++RRS
Sbjct: 61  ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              AQ      ++  G +S+NL    V V G  + LT KEYQ++E L  +     +++  
Sbjct: 121 SRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+ ++      E + +DV I  LRKKL  AA    YI+TV G GY
Sbjct: 181 LDSIWGYSFHGETRTVDVHIRTLRKKLGEAA---KYIKTVRGVGY 222


>gi|187477565|ref|YP_785589.1| osmolarity response regulator [Bordetella avium 197N]
 gi|115422151|emb|CAJ48675.1| two component system response regulator [Bordetella avium 197N]
          Length = 244

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 16/211 (7%)

Query: 23  ENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNV+V    ED  E+ K ++   FD ++LDL L    G  + R LR    +TP+ +L+
Sbjct: 32  QGFNVFV---AEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
             +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G 
Sbjct: 89  AKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGP 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKII 190
             +NL  +T+     ++ +T  E+ ++++ +      L+++  +  L  GR+ E   + +
Sbjct: 149 YVLNLSTRTLTRNSEQVPITTGEFSVLKVFARHPKIPLSRDKLM-ELARGREYEAFDRSL 207

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LRK +        +I+TVWG GYV 
Sbjct: 208 DVQISRLRKLIEPNPSKPVFIQTVWGLGYVF 238


>gi|15596996|ref|NP_250490.1| two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|107101231|ref|ZP_01365149.1| hypothetical protein PaerPA_01002264 [Pseudomonas aeruginosa PACS2]
 gi|218892248|ref|YP_002441115.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234893|ref|ZP_04928216.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|254240192|ref|ZP_04933514.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|9947782|gb|AAG05188.1|AE004606_2 two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|126166824|gb|EAZ52335.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|126193570|gb|EAZ57633.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|218772474|emb|CAW28256.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 235

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R VA +  P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR  
Sbjct: 68  VCREIRRVANL--PILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHA 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN +
Sbjct: 126 PLPASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQI 185

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +DG +    + +DV I KLR KL +       I+TVWG+GY+ 
Sbjct: 186 RGIGFDGLN----RSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLF 228


>gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +LIEDD A+  ++EL L  +   V     GE+G+ L +    D I+LD+ L  I GFEV 
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    +
Sbjct: 61  RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERES 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
               V G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++   
Sbjct: 120 NDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +++D  + +LR K+ +       I TV G GY L
Sbjct: 180 LGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 217


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++A  +EL L++E++ V+    G++ ++  K   +D  ILD+ + D+ GF +
Sbjct: 5   ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLDGFSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      PV +L+  ++  DK+ GL  GADDY++KPFN  EL AR++  +RR   +
Sbjct: 65  LKKIR-EDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTRY 123

Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q +     L +N D     +    ++LT  E+ ++  L  ++ + +T E   
Sbjct: 124 NTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEELF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++  +       +   + +LR+K++  A    +++TVWG GY +
Sbjct: 184 EAVWQEKYLDNNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTI 229


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   +++ L++E + + +   G + +E     + D ++LD+ + ++ G E 
Sbjct: 6   ILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +LS      DK+ GL  GADDY++KPF+  ELVARI++ +RR R +
Sbjct: 66  CMKIRETE-HFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRKY 124

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S       +V  +LS+N     V + G  + LT +E+ ++ELL+  +   L+ E    
Sbjct: 125 THSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V + K+R+K+        Y++TVWG GY
Sbjct: 185 KVWKEQYLESNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGY 227


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L     +    +ILD+ + DI GF
Sbjct: 15  VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGF 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 75  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 133

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + I   D      + ++   + V +    + LT KE+ ++  L+  K    TK+  
Sbjct: 134 MLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 194 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 244


>gi|305016|gb|AAB03045.1| similar to S. typhimurium OmpR [Escherichia coli str. K-12 substr.
           MG1655]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ALR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+ RS  
Sbjct: 62  TLKALRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILXRSHW 120

Query: 121 GHAQSLIVTGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q     G  ++ +DA       +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLM 228


>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 242

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDIP 58
           +ILLIEDDK++  ++   L SE F V     G   ++        +FD I+LDL L  + 
Sbjct: 13  KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R  ++ TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA++RR
Sbjct: 73  GLELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRR 132

Query: 119 S-RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S RG       +++I   ++ +  +   V      I L+ KE++++EL         +++
Sbjct: 133 SKRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRD 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + L  ++      + K +DV +  LR+KL         I+TV G GY
Sbjct: 193 LILEKIWAIDFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGY 239


>gi|113968597|ref|YP_732390.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049255|ref|YP_739805.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117918710|ref|YP_867902.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883281|gb|ABI37333.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890697|gb|ABI44748.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117611042|gb|ABK46496.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F + +   G+ G+EL    ++D I+LD+ L  + GFE
Sbjct: 3   RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALAGDYDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  K  TPV +L+      D+V GL+ GADDY+ KPFN  EL+ARIRAI+RRS  
Sbjct: 63  VLRALRQHK-QTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSHL 121

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ +  T     GDL ++   +        I LTG E+ ++  L+L     + KE  LN
Sbjct: 122 TAQEIHATPAQEFGDLRLDPSRQEAYCNEQLIILTGTEFTLLHTLALHAGELMNKEE-LN 180

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +  G+   P  + +D+ +  LRKKL   + G+  ++T+ G+GY+
Sbjct: 181 EIVLGKKLMPFDRSLDMHLSNLRKKLPERSDGRPRVKTIRGKGYI 225


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 101/185 (54%), Gaps = 2/185 (1%)

Query: 46  DAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
           DA++LD  L    G  +LR LR        PV +L+  ++  ++V GL++GADDY++KPF
Sbjct: 45  DALVLDWMLPGESGLGLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPF 104

Query: 104 NKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
              ELVAR+RA++RR++      +  G L ++L A    + G R+ LT +E+ ++  L+ 
Sbjct: 105 GAAELVARVRALLRRTQPEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQ 164

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++   L+ ++        + +D  + +LR  L +A G   ++ETV GRGY +R 
Sbjct: 165 NAGRVYSRTELLDRVWGADFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRMRS 224

Query: 224 NAKDE 228
              +E
Sbjct: 225 WEGEE 229


>gi|322833865|ref|YP_004213892.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169066|gb|ADW74765.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L++E   V+ ++  + G+      + D +ILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRTALEAEGLRVFESETLQRGLIEAGTRKPDLVILDLGLPDGDGLTY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + P+ +LS  +  EDK+  L +GADD+++KPF   EL+AR+R  +RR  G 
Sbjct: 68  IRDLRHWS-AIPIIVLSARTREEDKIAALDAGADDFLTKPFGVGELLARVRVALRRHTGS 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           AQ   L+   D++V+L  + V+  G   HLT  E++++  L       +T+   L+H++ 
Sbjct: 127 AQESPLVTFSDVTVDLINRRVQRNGDDCHLTPIEFRLLAELLANSGKVITQRQLLSHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL   A    ++ T  G GY
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEADATRPRHLLTETGVGY 225


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDIP-----YIKTVKGIGYKIDE 214


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E + V V   G+  +E+ K    D I+LD+ L  + G E
Sbjct: 5   KILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA----- 114
           V R L+      + P+ +L+      D + GL+ GADDYI KPF+  E+VAR++A     
Sbjct: 65  VCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRAL 124

Query: 115 -IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            I++  +   Q   V  +L+V  +     +   ++ LT KE++++ L++  +    T+E+
Sbjct: 125 RILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTREV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  ++      + + +DV I  LR+KL + +   +YIETV G GY
Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGY 230


>gi|154243815|ref|YP_001409388.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154162937|gb|ABS70152.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 235

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+  LA  I   L++E F +          E      +D  ++DLG+ D  G 
Sbjct: 1   MRVLLAEDNPRLASLIAEGLEAEGFVLERFGSLSAARESVAVDRYDLFLIDLGMPDGDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +RA+R A  +TP+ +++  + + D+V GL SGADDY+ KPF+  EL AR RA++RR  
Sbjct: 61  DFVRAVRRAGNTTPILVITARNGLGDRVGGLDSGADDYLVKPFDMPELAARCRALLRRPG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L  +  A+ V + G  IH+  +E  ++E L  R    ++K    + +Y 
Sbjct: 121 ACLGTTLNVENLDFDTIAREVRISGQVIHVPPRECALLERLMRRAGHVVSKASLEDTMYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              E     ++  + +LR++L  A   +  + T  G GY+L   A+    E
Sbjct: 181 LSSEVSPNALEAVVSRLRRRLV-AEKARVVLHTAHGIGYMLAPAAQAGQVE 230


>gi|268678762|ref|YP_003303193.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
 gi|268616793|gb|ACZ11158.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946]
          Length = 221

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 6/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  L  ++E  L    F   +   G++ +E C    FD  ++D+ + DI GFE
Sbjct: 4   RVLILEDNTLLLQTLEDFLLEHAFICTLVKSGKEALEACYQNSFDLYLVDVKVPDINGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR +   TP   ++ ++  E   +G   G DDYI KPF+ +EL+ R++AI+ R++G
Sbjct: 64  VLNALRHSGDRTPAIFITSLNDQESLTKGFLLGGDDYIKKPFDLQELLLRMKAILTRTKG 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI+  +  +NL  K +      + L  K+++++ LL   +   +TKEM  NHL++
Sbjct: 124 FVDDWLIIDDEYKLNLARKRLFKGNVELDLNLKDFELLYLLVKERGHVITKEMIHNHLWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +E     + V+I  L+K       GK  I  +   GY
Sbjct: 184 SCEEINEGSVRVYINNLKKIF-----GKETIVNIRSIGY 217


>gi|284028530|ref|YP_003378461.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283807823|gb|ADB29662.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 218

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ LA +I   L+ E+F V +   G   +E      +D ++LD  L  + G 
Sbjct: 1   MRILVVEDERVLADAIGEWLRRESFAVDIVYDGAAALERTAVTGYDVVVLDRDLPSVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +  A   T V +L+  +++ ++V GL  GADDY+ KPF   EL AR+ A+ RRSR
Sbjct: 61  EVCRQIVTAGGQTRVLMLTAAAAVRERVAGLAIGADDYLGKPFAFAELSARVHALTRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   G R+ L  +E+ ++  L   +   ++ E  L   +D
Sbjct: 121 AAVPPVLERSGIRLDPVRREVARDGRRVELANREFAVLAELLRAEGAVVSAEQLLERAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V + KLR+KL    G    +ETV G GY L
Sbjct: 181 ENIDPFTNTVRVTVMKLRRKL----GEPPLVETVPGAGYRL 217


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 123/221 (55%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIP 58
           ++IL+++D+  +   ++  L ++ F V     GE+ +++  F + D   ++LD+ +  + 
Sbjct: 4   LKILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVF-FAQKDIALVLLDVMMPKMD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EVLR +R      PV +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR
Sbjct: 63  GWEVLRTIRKYS-QVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +   +  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++
Sbjct: 122 TNVASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++     + + ID  + KLR K+        YI+T+WG GY
Sbjct: 182 WNYDYFGDARTIDTHVKKLRSKMGEKG---EYIKTIWGMGY 219


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +  +L +E + VY    G++ +E+ +  + D  ILD+ L DI GF+
Sbjct: 3   KILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPDISGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+++R  K   PV +L+      DK+ GL  GADDYI KPFN  E++AR++  +RR + 
Sbjct: 63  VLQSIR-EKQFFPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121

Query: 122 H-AQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +QS+  T +     L+++++++ V +    I LT  E+ ++  L   +   ++ E   
Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          +   I K+R+K+       N I+TVWG GY +
Sbjct: 182 EKVWKEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTI 227


>gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
 gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  S P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQVI 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A       +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSTEESVVAFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ +        YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---------FYEFDAIILDL 52
           RIL++ED+  +   I L L+ E + +     G   + L +           EFD ++LDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRRSRGHAQSLIVTG---DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR +  + S        D+++      V +    I+L+ KEY+++EL         
Sbjct: 140 RALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++  +  ++      + K +DV I  LR+KL        Y+ TV G GY
Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGY 249


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++ +   + + L+ EN+ +   + G+  +++    ++  I+LD+ +    G 
Sbjct: 5   VKILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + L   K+ TPV +L+      ++V G + GADDYI KPF+  E+V R++A++RRS 
Sbjct: 65  EVCQELHEKKM-TPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSL 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   ++++ DA  V   G  ++LT KEY+++  L+   +    +E
Sbjct: 124 QTGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
             L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 184 QLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGY 231


>gi|255022209|ref|ZP_05294209.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|145208521|gb|ABP38227.1| RsrR [Acidithiobacillus caldus ATCC 51756]
 gi|254968356|gb|EET25918.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +E  L+   F V     G+         E D IILDLGL D  G ++
Sbjct: 9   ILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDGLQI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR+    TP+ IL+      D++ GL+ GADDY+SKPF+  EL+AR++AI+RR+   
Sbjct: 69  CQRLRLT-YDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTKPM 127

Query: 120 ---RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R HA    + + G   V+   + +  +G  + L+  ++Q +  L   +   L++E  
Sbjct: 128 NRGRQHADEPEICMKGAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLSRERL 187

Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  L  GR    + + ID+ I +LRK L +   G  +I TVWG GY+ 
Sbjct: 188 ML-LSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMF 234


>gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+ED+ ++A ++   L+++ F V    LG+  +   +    D +ILD+GL DI GFE+
Sbjct: 6   IWLVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGLPDISGFEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A+  TP+  L+  S   D++ GL+ GADDY++KPF+  E+ AR+R I+RRS+  
Sbjct: 66  CKQVR-ARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQPV 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A     +  L+++ +   +   G  + LT  EY +++ L        +++  ++ ++ G 
Sbjct: 125 ATQ--PSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSGA 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E   + +D  I  +R KL       N I T  G GY L
Sbjct: 183 EESLDRTVDTHIKTIRAKLRERDADANLILTHRGLGYSL 221


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFE 61
           IL++EDDK ++  IEL L    F       G + I++     +   ++LD+ L    G+E
Sbjct: 4   ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQFNGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV  L+      D V GL  GADDYI+KPF  +EL+ARI+A +R+   
Sbjct: 64  VLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKKAA 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL-- 178
              ++ +   DLS++LD   V   G  I L+  E+ ++  L L      ++E  L+ +  
Sbjct: 124 VSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQVWG 183

Query: 179 --YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             Y G D     I+DV+I  LR K+ +    K  I+TV GRGYV++
Sbjct: 184 FDYFGND----NIVDVYIKYLRDKI-DKPFEKKLIQTVRGRGYVIK 224


>gi|302557945|ref|ZP_07310287.1| transcriptional regulatory protein CutR [Streptomyces griseoflavus
           Tu4000]
 gi|302475563|gb|EFL38656.1| transcriptional regulatory protein CutR [Streptomyces griseoflavus
           Tu4000]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKVVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G++ +E  +  + D ++LD+ +  + G+ V
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDGYGV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 76  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKD 134

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        +I  GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 135 SVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEILK 194

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 242


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 45  ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 104

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 105 TLKIR-EESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 163

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  ++ S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 164 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 223

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 224 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 271


>gi|269468738|gb|EEZ80357.1| hypothetical protein Sup05_1049 [uncultured SUP05 cluster
           bacterium]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 13/229 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDDK +A SI   L+S++F V   ++G D ++       D ++LD+GL DI GF+V
Sbjct: 4   ILLVEDDKVIAESISFALESDSFKVNWREMGNDALDYLNNNTVDLVLLDIGLPDISGFDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQS-GADDYISKPFNKEELVARIRAIVRRSRG 121
           LR +R+     P+ I++   +  D V GL+  GADDY++KPFN   LVARIRA +RR+  
Sbjct: 64  LRKIRIDS-EIPIIIITARDADADIVLGLEGLGADDYVTKPFNPRVLVARIRAQLRRA-- 120

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q+ I              ++N D   + +    I LT  E +++  L    N   +KE
Sbjct: 121 NKQTSIAKEPTAKSKSKQVFTINEDMNQILLHDQVIDLTKAECKILLHLVRNPNRIHSKE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN +YD         I   I  +RK L+       YIE   G GY L
Sbjct: 181 QLLNVMYDRPTGSSDSTIVTHIKLIRKSLNKIDPDNEYIENHRGLGYSL 229


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIISFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD AL+  I ++L+S  +       G   +        D ++LDL L  + G E
Sbjct: 4   KILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R   +  P+ +L+  +   D V GL++GADDY+ KPF  +EL+AR+ A +R    
Sbjct: 64  ICRRIRQTSV-VPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+ ++   DL +NL +  V   G  + LT  EY ++  L+ +    L++E  L  ++  
Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHGADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGY 220


>gi|159898795|ref|YP_001545042.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891834|gb|ABX04914.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L S  +++   + GEDG+          IILDLGL D+ G +V
Sbjct: 7   VLVIEDEAPIRRFLRASLPSHGYHLIEAENGEDGLLQAAMQRPAIIILDLGLPDLDGLQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    +TP+ +LS     +DK+  L +GADDY++KPF   EL+AR+R  +R    H
Sbjct: 67  TQRLR-EWTNTPIIVLSARGREDDKIAALDAGADDYLTKPFGMGELLARLRVALRHLHQH 125

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +   G L V+L  + V V    +HLT  EY ++  L       +T    L  +
Sbjct: 126 GGEKGEPVFQVGALRVDLVRRQVFVAEQEVHLTPNEYNLLTTLVQHAGKVMTHRQLLREV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E   + V++ +LR KL        Y+ T  G GY L
Sbjct: 186 WGPAYTEENHYLRVYMGQLRHKLEADPARPRYLLTEPGVGYRL 228


>gi|55822759|ref|YP_141200.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55738744|gb|AAV62385.1| response regulator (homolog to ciaR Spn), truncated [Streptococcus
           thermophilus CNRZ1066]
          Length = 173

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 90/162 (55%)

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           I+LDL L +  GF VL+ LR   I+TPV I++   S++DK  G + G DDY++KPF  EE
Sbjct: 2   ILLDLMLPEKDGFTVLKELREQGITTPVLIMTAKESLDDKGHGFELGVDDYLTKPFYLEE 61

Query: 108 LVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           L  RI+A+++RS    Q+    GD+ VNL   +  V    + L GKE+ ++      +N 
Sbjct: 62  LKMRIQALLKRSGKFDQNTFSFGDVCVNLSTNSTYVGDKEVELLGKEFDLLVYFLQNQNV 121

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN 209
            L K    + L+    +  V +++V++ K+RKKL       N
Sbjct: 122 ILPKSQIFDRLWGFDSDTNVSVVEVYVSKIRKKLKGTDFATN 163


>gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+ED++ +   +++ L+ E + V+    GE+GI++ +  +   ++LD+ L  + GF
Sbjct: 3   VKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR    +  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR  
Sbjct: 63  AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++ I+     ++   +        I LT  EYQ++++        + ++  L  
Sbjct: 123 PEEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + KI+DV I +LR K+        YIETVWG GY
Sbjct: 183 VWGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGY 224


>gi|295699377|ref|YP_003607270.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438590|gb|ADG17759.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L+   + V +   G DG+ L   ++++ ++LD+ L  I G+
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRENGYAVDLARTGTDGLHLALEHDYELVVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +    V  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  EIMRALRARRDLR-VIFLTARDQVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL +++  + V  +G  I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 IRESDVFEVADLKLDVLRRRVTREGVDIPLTNKEFMLLHLLVRREGEALSRSQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +    K  I TV   GY   ++A
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDHPF-EKKLIHTVRSIGYTFGDSA 223


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + ++  P+ +++ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLS-VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               Q+     ++  G L+ V    + V  +G  + LT  E++++  L  R   T++   
Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFEG-VVKLTHLEFELLHCLLQRHGQTVSPSD 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 182 ILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|157164458|ref|YP_001466682.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112800486|gb|EAT97830.1| regulatory protein VanR [Campylobacter concisus 13826]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDIPG 59
           RIL+IEDD  LA  +   L  EN+++ VT   E   G+      EFD +ILDL L  + G
Sbjct: 3   RILMIEDDMELAEILTEYL--ENYDIKVTTAEEPYIGLSTLNTSEFDLVILDLTLPGMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R  K + P+ I S    I DKV  L +GADDY+ KP++ +EL+ARI++ +RR 
Sbjct: 61  LEVCKEIR-KKHNIPIIISSARHDITDKVNALDNGADDYLPKPYDPQELLARIKSHLRRQ 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A++L    DL +    + +  +G  ++LT  EY +++ L  ++   +T+E  +
Sbjct: 120 SIAPANEARNL--NKDLILKEFEREILFKGSVLNLTAAEYDILKYLLQKEGGAVTREELI 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     ++   K IDV I ++R+KL+       YI  + G GY L
Sbjct: 178 YNCESINEDSSNKSIDVIIGRIRQKLNENPKEPKYIHAIRGIGYKL 223


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +   ++  GED +E      FD ++LDL L  I GF+V
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLPGIDGFDV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  ++    P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI++R R
Sbjct: 66  CRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKRDR 125

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q ++    L V++    V++ G  I LT  E++++  L  RK    +++M L+ 
Sbjct: 126 RQSAQHQEVLSAAGLDVDIVRHEVKLDGKEIVLTLMEFKLLVALLKRKGQAQSRDMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++       + ID  I +LR+KL       + I+TV G GY   E
Sbjct: 186 VWEVDRFINTRTIDTHITRLREKLGVTG---SMIKTVRGLGYKFEE 228


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 115/220 (52%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+   I   L+ E + V     GE   +L    + D I+LD+ +  + G +V
Sbjct: 5   ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLLN-RKPDLILLDIMMPGLDGIQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
            R +R   +S P+  LS    +ED++ GL  G DDYI+KPF+ EELVAR+ A +R   RS
Sbjct: 64  CRWIR-DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRRELRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L ++L A  V      I +T KE+++I  L++      ++E     ++
Sbjct: 123 PDQEKTVLRFGRLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQVFSREQIYEGVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G  E     +   I K+R KL        YI TVWG GY
Sbjct: 183 -GFGEGSDATVTEHIKKIRAKLGAVDPVTPYISTVWGIGY 221


>gi|330974194|gb|EGH74260.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + FNV + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N  E+VAR+ A++RRS+ 
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G+ +  +   +L V LDA T  ++G       + LT  E++++  L    +   T+E  
Sbjct: 124 SGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G +N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKLE-IHGVENVLVTVRSVGYRFR 229


>gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
 gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVILEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V + G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V +  +R+K+      K+YIET+WG GY
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGY 225


>gi|170697617|ref|ZP_02888706.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171321223|ref|ZP_02910192.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172061579|ref|YP_001809231.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170137504|gb|EDT05743.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093507|gb|EDT38679.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171994096|gb|ACB65015.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 210

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 96/163 (58%), Gaps = 5/163 (3%)

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VLR LR    S PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR
Sbjct: 49  GIDVLRTLRARGQSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR 108

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G ++SLI  G L+++  +  V + G  + L+ +E+ +++ L  R    L+K      +
Sbjct: 109 QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEKM 168

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E     ++V+I  LRKKL     G + I  V G GY++
Sbjct: 169 YGWGEEIGSNTVEVYIHALRKKL-----GSDLIRNVRGLGYMV 206


>gi|291006740|ref|ZP_06564713.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 11/222 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD  +A ++  +L +          G D   L +  E D ++LDLGL D+ G 
Sbjct: 3   VRVLLVEDDDGVADALVDVLTAHGHRPTRVSRGADA--LTRHREHDLVLLDLGLPDVDGL 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           EVLR LR VA++  PV +L+        VRGL+SGADDY+ KP    EL+ARI  + RR 
Sbjct: 61  EVLRKLRRVAEL--PVIVLTARGEERSVVRGLRSGADDYLVKPVRMAELLARIDVVTRRH 118

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A   +   D+ V+L  + V V    + LT KE+ ++ +L+    T ++++  ++ 
Sbjct: 119 SAASPAGEAVAAADVRVDLRTRRVRVGERDVELTPKEFDVLAVLANHAGTAVSRQKLMDE 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++        + +DV I +LR KL         + T+ G GY
Sbjct: 179 VWGDAYLAISRSLDVHIAQLRAKLDR----PQVLTTIRGFGY 216


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + L++E + V     G + +++ K  +   IILD+ + ++ G E 
Sbjct: 6   ILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ +LS      DK+ GL +GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 66  CIKIREHK-NMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTKL 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     +I   DL++N+    V+V    I+LT +E+ ++ELL+  +    + E   
Sbjct: 125 NNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++         + V I K+R+K+   +    YI+TVWG GY
Sbjct: 185 ERVWNEEFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGY 228


>gi|311896069|dbj|BAJ28477.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + LK+  + V     G   +EL      D ++LDLGL D+ G E
Sbjct: 3   RVLVVDDEPQIVRALVINLKARKYEVDSAHDGASALELAAARHPDVVVLDLGLPDMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R LR      P+ +LS   + ++KV  L +GADDY++KPF  +EL+AR+RA VRR+  
Sbjct: 63  VIRGLR-GWTRVPIIVLSARHASDEKVEALDAGADDYVTKPFGMDELLARMRAAVRRAEP 121

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S++ T   +V+L AK V  QG  + LT  E+ ++E+L       +++   L  +
Sbjct: 122 VTAEGESVVATDSFTVDLAAKKVNRQGADVRLTPTEWHLLEVLVRNSGRLVSQTQLLQEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E   + V++ +LR+KL        +  T  G GY
Sbjct: 182 WGPAYRKETNYLRVYLAQLRRKLEADPSHPRHFITEPGMGY 222


>gi|295101918|emb|CBK99463.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           +R+LL+EDD  +  +    LKS+ NF V   + G D +   +  +FD I++D+ L D  G
Sbjct: 2   IRVLLVEDDPVIRDTTCYFLKSQQNFEVVCAETGGDALSHAR-EKFDVILMDILLPDTNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + LR +    P+   S +   +  VR L+ G DD+++KP++ + L+ARI A +RR 
Sbjct: 61  VDLCQRLR-SWYHCPIIFTSCLDDTDTIVRALEMGGDDFLAKPYHNKILLARIMANIRRV 119

Query: 120 RGHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       V G      +++ ++ +VE  G  +HL   EY+++ L     NT  T     
Sbjct: 120 QMDGAEPSVNGYHCAAFTLDANSHSVEKDGRSVHLADMEYRILTLFIRYPNTFFTANELY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +V+ + V I  LR K+        Y++ VWG+GYV + + 
Sbjct: 180 QKIWGKESLGDVRTVQVHIHNLRSKIEPDPAKPVYLKNVWGKGYVFQPDG 229


>gi|294012529|ref|YP_003545989.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
 gi|292675859|dbj|BAI97377.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +   +  +L  E F         +  +L +    D  +LD+ L    GF +
Sbjct: 6   IAVVEDDREIRALVVDLLNREGFEAVGCRTTLEFDQLNQRRRIDLAVLDVMLPGEDGFSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A    PV +++  +   D++ GL+ GADDY+ KPFN  ELVAR+RAI+RR+RG 
Sbjct: 66  CRRLRAAG-DIPVLMVTAKADDVDRIVGLEIGADDYLPKPFNPRELVARVRAILRRTRGQ 124

Query: 123 -------AQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A      G  +++L A++ V  +G  + LT  E+ ++          L ++  
Sbjct: 125 HRISPALANERYGFGGWTLDLGARSVVGPEGEEVELTAGEFDLLHCFVTHPQRVLNRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+        P  + IDV + +LR+KL+ A GG   I+TV G GY
Sbjct: 185 LDWTRGRSAGPFDRAIDVQLSRLRRKLAQAPGGDTVIKTVRGGGY 229


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++A   +  L+  ++ V +   GE G  +    ++   ILD+ L    GFE
Sbjct: 3   RILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R  K + P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKAIRKEK-NIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYDR 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S +   D      L ++  A+ V V       T KE+ ++  L+   N   +K+   
Sbjct: 122 LVASTVPQNDVLEIRGLKIDKTARRVFVNNEEKVFTTKEFDLLLFLASNPNKVFSKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++D     ++  + V I K+R+K+        YIET+WG GY
Sbjct: 182 RNIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGY 225


>gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
 gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V + G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V +  +R+K+      K+YIET+WG GY
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGY 225


>gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 255

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  ++  ++  L+  NF V     GE+       +    ++LD+ L    G+ +
Sbjct: 32  ILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVMLPGRSGWSI 91

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  +R AK S PV +L+ +  I++K+ GL  GADDYI+KPF  +E+VAR+ A++RRS+  
Sbjct: 92  LEYIR-AKSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQL 150

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H +     G L V+  A +V + G  +  T K+  +   L+  KN T T+E  +  
Sbjct: 151 IEGNHVKQF---GSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTFTREQLIEQ 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E   + +D+ I ++R+ L N    +  I T  G GY L
Sbjct: 208 VWGMDYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGYKL 251


>gi|227326297|ref|ZP_03830321.1| two component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 236

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  L H +   L S   +  +   G   ++  K   +D ++LD  L  + GF
Sbjct: 1   MRVLVVDDDSVLCHWLGSKLHSHGHSCRMVHDGAHALKAIKDEVYDVVLLDRMLPIMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR L+ ++   P+ +LS +    D+V GL+ GA+DY+ KPFN  EL  R+  + RR +
Sbjct: 61  TVLRELQGSR-HPPIMLLSALDRDVDRVMGLELGAEDYLGKPFNFNELRLRLDIMARRGK 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H    S++   DL ++   +     G RI LT KE +++ +L       +T+ M L  +
Sbjct: 120 RHVDNPSMLSFEDLQLDRMQRVAWRGGKRIDLTDKEIKLLIILMENPGQAITRTMLLERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +    +P+  +IDV + KLR K+      +  I+T+   GY L    KD+T
Sbjct: 180 WGYNFDPQTNLIDVHMSKLRAKIDKGF-PRPLIKTLRAMGYALGAVDKDKT 229


>gi|217966125|ref|YP_002351803.1| KDP operon transcriptional regulatory protein KdpE [Listeria
           monocytogenes HCC23]
 gi|217335395|gb|ACK41189.1| KDP operon transcriptional regulatory protein KdpE [Listeria
           monocytogenes HCC23]
 gi|307572265|emb|CAR85444.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ +++ I  +L + +++V     G++ +E    +  D ++LDLGL D+ G +V
Sbjct: 7   VLIVEDEEGISNFISAVLTASDYSVIKAVNGKEALEQTASHSPDVVLLDLGLPDVEGLDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +RV     P+ ++S      +KV  L  GADDYI+KPF   EL+ARIR  +R  +  
Sbjct: 67  LRDIRVWS-KVPIIVVSARDHEREKVTALDHGADDYITKPFGTSELLARIRTALRHIQPS 125

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++      +I   DL ++ D + V++    IH T  EY+++ LL+      LT +  +  
Sbjct: 126 SKETPNDHIIRIQDLFIDDDRRLVKMGDTEIHFTPIEYKILLLLARHAGKVLTHDFIIRE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G    E + + V +  +R+K+        YI T  G GY + E
Sbjct: 186 IW-GPYPSENQALRVNMSNIRRKIEKNPAEPAYILTEVGVGYRMAE 230


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ L        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L  ++    +   F V     G  G+E+ +    D IILD+ L  + GF V
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63

Query: 63  LRALRVAKIST-PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            RA  VAK +T P+ +L+ +     ++ GL+ GA DY+ KPF+  EL+AR+RAI+R +  
Sbjct: 64  CRA--VAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q+    ++  G + ++ +++ V  +   I L+ KE+ ++  L       L++++ L  
Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++        + IDV +  LR+KL         I TV G GY  ++ A D
Sbjct: 182 VWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATD 231


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 6   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 66  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 125 IETAVAEENASSGTQELTI-GNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 184 TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 236


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 118/231 (51%), Gaps = 16/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L    + V     GE  +E+      D ++LD+ L  + GF V
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A+   P+  L+ + +I ++V GL  GADDY++KPF+ +EL ARI  I+RR  G 
Sbjct: 64  CRRIR-AESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRV-GP 121

Query: 123 A------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           A            Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181

Query: 171 KEMFLNHL--YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L  Y  R   +++++DV++ +LR KL         I TV G GY
Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +A  ++  L+   +   V   G  G +L     +D II+D+ L  I G 
Sbjct: 1   MHILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ R ++ +    P+ +L+ + + +DK+ G  +GADDY+ KPF+  EL ARIR +++R  
Sbjct: 61  DLCREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKRGS 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   + +++  G+L +NL  + V+     I+LT KE++++E +   K   L +      
Sbjct: 121 ASNSASTAILKAGELEMNLHTRIVKRGNVEINLTPKEFKLLEYMIRNKGRVLPRVEIAEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +     IDV+I  LR K+  A   K YI T  G G++ +
Sbjct: 181 VWDTTFDTGTNFIDVYINYLRNKIDKAFEEK-YIHTKPGMGFIFK 224


>gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD      ++  L+  ++ V +   G DG+E  +  +FD  +LD+ + ++ GF 
Sbjct: 4   KILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDKFDICLLDVMMPEMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P   ++  S  ED  +G + GADDYI KPF+ E L+ +I+AI+ RS+ 
Sbjct: 64  LGKKIREIDGNVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAILSRSK- 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H ++      I  G+   N + +T+     +I LT KE +++ELL   K+  L +E  L 
Sbjct: 123 HEEAEPKPKFITIGEYVFNTELRTITKNEEQIKLTPKEARLLELLYNYKDGLLPREKALT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   D    + +DV++ KLRK   +    K  IE V G G+ L
Sbjct: 183 EIWGTNDYFTARSMDVYVTKLRKYFKDDQNIK--IENVHGSGFRL 225


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDGIRA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 68  TLKIR-EESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  ++ S+   G LS+N D K V V G  + LT  EY +  LL L KN    K   +N
Sbjct: 127 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNI--LLLLVKNQ--GKVFSIN 182

Query: 177 HLYDG-RDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y+   +E  +     + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 183 QIYESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|323525403|ref|YP_004227556.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382405|gb|ADX54496.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRAALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSRG 121
           +R LR      PV +LS  +   +KV  L +GADDY++KPF   EL+ARIRA + RR++G
Sbjct: 68  IRELR-GWSEMPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     +  G +SV+L  + V  +G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GATESPQVRFGAVSVDLALRQVTREGAAVHLTPIEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR KL        +I T  G GY L
Sbjct: 187 GPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRL 228


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED K     ++  L +  F+V   + G  G+ L + ++ D ++LDL +  + G E
Sbjct: 5   KILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGMDGLE 64

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V R ++    +++I  PV +L+      DK+ GL+ GADDYI KPF+  ELV RI+A++R
Sbjct: 65  VCRQIKGNSSLSRI--PVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLR 122

Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+ G    A        L ++ +A  + V G    LT  E++++ +L        T++  
Sbjct: 123 RAGGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++D   E   + +D  + +LR+KL   A    +IETV G GY  R
Sbjct: 183 LDTVWDTHFEGYSRTVDTHVRRLRQKLGPYA---EWIETVRGVGYRFR 227


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L++   
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRYKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|126451446|ref|YP_001065854.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|242317008|ref|ZP_04816024.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|126225088|gb|ABN88628.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|242140247|gb|EES26649.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 260

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+A A+  +L+L    F+V  +  G   I        DA++LD+ L D+ G E
Sbjct: 6   KVLLVEDDEAQANWAKLVLTRGRFDVTHSQTGGQAIRAMTKEVPDAVVLDMRLPDVHGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R      PV +LS        V    +GADDY+ KP  + E +ARI A++RR +G
Sbjct: 66  VLVWIRRNFFDVPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRR-KG 124

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           HA S  I  G ++++L  K V + G  + +   EY+++E+++    + + +E+ +N ++ 
Sbjct: 125 HAVSGTIEIGGIAIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIW- 183

Query: 181 GR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           GR  DE   + +D  + ++R KL         + +V+  GY L
Sbjct: 184 GRSIDEAVSRSLDTHVYRIRHKLKVHGVSNVSLRSVYNLGYRL 226


>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
 gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLI+DD+ L   +   L SE F+V     G  G+   K  +F+  ++D+ +    G 
Sbjct: 1   MAILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR +  S PV +L+      D++ GL+ GADDY+ KP N  EL ARIRA++RRS 
Sbjct: 61  DLLRELRQSS-SLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSD 119

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +S        G L  +  ++T+   G  + LT  EY ++ +L       ++K     
Sbjct: 120 TQQESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQ 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                R  P  + +DV I  LRKK+S A   +  I+TV   G++ 
Sbjct: 180 AALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLF 224


>gi|320449349|ref|YP_004201445.1| DNA-binding response regulator [Thermus scotoductus SA-01]
 gi|320149518|gb|ADW20896.1| DNA-binding response regulator [Thermus scotoductus SA-01]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 10/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           M++LL+ED+  L  ++E  LK++ + V      E+  +     E D ++LD+ L + P  
Sbjct: 1   MQVLLLEDEPRLGRAVEGALKAQGYGVRWARGLEEARDAFLELEPDLMVLDVRLPEDPDG 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF   + +R A    P+  L+   ++ED+V GL  G DDY+ KPF+ EEL+AR+RA+ RR
Sbjct: 61  GFRFAQEVRQAGYKGPILFLTARDTLEDRVFGLDLGGDDYLVKPFHLEELLARVRALFRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  GDL  +L  + V  +G R+ L+ KE+ ++E+  L      + E     +
Sbjct: 121 QAEAKGARLRLGDLEADLAGRAVYHRGQRVDLSLKEFALLEVFLLHPGRVFSPEELAEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   D  +V  + V+I  LR+KL         I TV G GY L
Sbjct: 181 FG--DAEKVGAVKVYIHYLRQKLH-----PQVIRTVPG-GYRL 215


>gi|306826251|ref|ZP_07459585.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304431527|gb|EFM34509.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 117/204 (57%), Gaps = 2/204 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L   I + L+ E ++V     G+D +E  K   +  +I D+ +    G 
Sbjct: 1   MKILLAEDETQLNRVITVALEREGYSVDSVFNGQDAVEKAKSNHYHLMIFDIMMPIKTGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R A  +T V +L+ M+ + D+V GL +GADDY++KPF+ +EL+AR+R+  RR  
Sbjct: 61  EALKEIRQAGNTTHVIMLTAMAEVNDRVTGLDAGADDYLTKPFSLKELLARLRSTARRLE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
            +    +  G+  ++++ + +    + I L  KE Q++ LL    N  L+ +  L  ++ 
Sbjct: 121 DYTPDTVQLGNTRLDIEEQELAA-TNSIRLGKKETQLLTLLIQHANQPLSCQQLLEQVWP 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSN 203
           D  +EP+ +++ ++I  LR+KL +
Sbjct: 180 DELEEPDHELVFLYISYLRQKLQS 203


>gi|304407984|ref|ZP_07389634.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343003|gb|EFM08847.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 112/227 (49%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD      + L L  E + V       +G+   + +  + ++LDL L D  G  
Sbjct: 3   KVLIIEDDNIFGDMLSLYLTEEQYEVTRVPSAGEGLRALQEFAPNVVLLDLMLPDTEGIN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               LR    + P+ ++S  + + +++  L  GADDY+ KPF+ +EL ARI A++RR+  
Sbjct: 63  ACAMLR-GFTTIPIIVISAETKVSERILSLSEGADDYLCKPFSMQELKARIEAVLRRT-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEV---------QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + QS ++    + N D  T+ +          G+ I  T  E+++I+LL        ++E
Sbjct: 120 NMQSAVIAPPAAPNADEWTLVLDMARRLLICNGNEIETTFSEFEIIKLLYHNPGKVFSRE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +N +         + IDV I  LRKK+        YI+TVWG GY
Sbjct: 180 ELINAIRGIDSYINERAIDVHITNLRKKIEQNPKEPQYIKTVWGVGY 226


>gi|298489829|ref|YP_003720006.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231747|gb|ADI62883.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 122/222 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  LA ++   L  + + V +   GE      K  ++D ++LDL L +I G 
Sbjct: 1   MRILLIEDDIRLAETLAEALTDQLYVVDIATDGESAWNCTKALDYDLLLLDLMLPEIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR      PV +L+   +I DK+ GL +GADDYI KP +  EL ARIRA++RR  
Sbjct: 61  TLCHRLRSHGYQKPVLMLTACDTISDKISGLDAGADDYIIKPVDLGELFARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++  G+L +N     V      +H+T KEY ++ELL       L++ + ++H++ 
Sbjct: 121 TISPPVLEWGNLQLNPSTYEVTYNHTPLHITPKEYSLLELLLRNGRRLLSRSVIIDHIWR 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P+   + V +  +R+KL  A   +++IET+ G GY L+
Sbjct: 181 TDTCPDEHTVKVHLRSVRQKLKAAGAPEDFIETIHGMGYRLK 222


>gi|302874361|ref|YP_003842994.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691040|ref|ZP_07633486.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577218|gb|ADL51230.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKS--ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+ILL+ED+K ++ ++   L+   E   VY    G + IE  K Y +D +ILDL L +I 
Sbjct: 2   MKILLVEDNKEISDNVANYLEKVMEVQPVYS---GGEAIEYLKTYNYDVVILDLMLPEID 58

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L  +    ++T V +L+    + DK++    GA+DY++KPF  EEL ARI AI++ 
Sbjct: 59  GMTILSYISKRALNTGVIVLTAKEGLGDKLKAFNLGANDYLTKPFFLEELKARIIAILKS 118

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   ++LI   D+ +++  KT  +   ++ +  K Y+++E L + K   L KE   ++
Sbjct: 119 MGKIKKENLIEFMDIQIDIKTKTAYIGDEKLDINEKSYKLLEYLVINKGVLLFKEQIFDN 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   +II+V+I +LRK+L+     K YI    G GY+L
Sbjct: 179 VCGYGSDASTEIIEVYISRLRKQLAPFNYDK-YIVNKRGMGYML 221


>gi|239942575|ref|ZP_04694512.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989036|ref|ZP_04709700.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291446037|ref|ZP_06585427.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348984|gb|EFE75888.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED++ LA  +   L+   F V     G+  +     +++D ++LD  L  + G 
Sbjct: 9   MRVLVAEDEEILAELVATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGD 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L  +   T + +L+   ++ED+V GL  GADDY+SKPF   ELV+R+RA+ RRS 
Sbjct: 69  DVARRLVASGSRTRILMLTASGAMEDRVAGLDLGADDYVSKPFEFPELVSRVRALRRRSA 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    + ++   ++    G  + L+ KE+ +++LL      T++ E  L   +D
Sbjct: 129 RPVPPQLERHGIRLDTVRRSALRDGRDLDLSPKEFTVLQLLLEADGGTVSAEELLERAWD 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V + KLR KL   A     I TV G GY L
Sbjct: 189 ANADPFTGAVRVCMSKLRAKLGEPA----LIRTVQGVGYAL 225


>gi|109453300|gb|ABG34130.1| PhoP [Salmonella enterica subsp. arizonae]
 gi|109453304|gb|ABG34132.1| PhoP [Salmonella enterica subsp. arizonae]
          Length = 213

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 7/217 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MR+L++ED+  L   +++ L+     V   D  ED  E   +   +  D  I+DLGL D 
Sbjct: 1   MRVLVVEDNALLRLLLKVQLQDSGHQV---DAAEDAREADYYLNEHLPDIAIIDLGLPDE 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++R  R + +  PV +L+     +DKV  L SGADDY++KPF+ EE++AR++A++R
Sbjct: 58  DGLSLIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G A  +I      V+L  + + V    I LT  EY ++E L       ++K+  +  
Sbjct: 118 RNSGLASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQ 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           LY   +  E   IDV + +LRKK+  A    + I TV
Sbjct: 178 LYPDAELRESHTIDVLMGRLRKKI-QAQYPHDVITTV 213


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L +  F+V V +  E    L     FDA++LD+ +    G  
Sbjct: 21  RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R +  +TP+ +L+      D++ GL+ GADDY+ KP+N  EL+AR+ AI+RR   
Sbjct: 81  ILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRREP 140

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +      ++  G+ S++L  + +      I LT  E+ +++  +      L+++ 
Sbjct: 141 VDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRDK 200

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +  GR+ E   + +DV + +LRK +        Y++TVWG GYV 
Sbjct: 201 LM-EMARGREYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVF 248


>gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D ++    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKVGSYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R LR   ++ P+ +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RA++RRS  
Sbjct: 72  AARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSSY 131

Query: 120 ---RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +G A     ++  GDL ++L  + V   G R+ LT  E+ ++E+        LT+E 
Sbjct: 132 TGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR    D +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRPAEGDPS 246


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
              +R  + S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 68  TLKIR-EESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+A     S+   G LS+N D K V V G  + LT  EY +  LL L KN    K   +N
Sbjct: 127 GNAAESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNI--LLLLVKNQ--GKVFSIN 182

Query: 177 HLYDG-RDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y+   +E  +     + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 183 QIYESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+++   +   L++++F+V      E+   + + +    ++LD+ +    GFE+
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R A+   P+  LS  S   DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 67  CRRIR-AESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATR 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   + ++  G L +NL  + V V G+ + LT KE++++ + +       T +  L   +
Sbjct: 126 RPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           DG  +     I V + +LR+K+        ++  VWG GY
Sbjct: 186 DGVGDRHT--IRVHLSRLREKIEADPNQPQFLVNVWGVGY 223


>gi|182679117|ref|YP_001833263.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635000|gb|ACB95774.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 218

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 94/163 (57%), Gaps = 5/163 (3%)

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E L+A+R +     + +++    I D++ GL  GADDYI KPF+ +EL+ARI A+ RR
Sbjct: 59  GLEFLKAIRRSNSKMAILVMTAHDQISDRIAGLSEGADDYIVKPFDLDELIARIDAVYRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  I   D+ ++L  + +   G  + LT KE+ ++ELL+ R    ++KE     L
Sbjct: 119 YAPVAEEGIKINDIHLDLHGQRLTKSGVDVELTAKEWAILELLARRPGMIISKERIEEAL 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   I+VF+ ++RKK+     G+N I TV GRGY L
Sbjct: 179 YGFGEEIESNAIEVFVSRIRKKV-----GRNIIRTVRGRGYCL 216


>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
 gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ L   +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPK-LIHTKAGMGFILTD 226


>gi|154149077|ref|YP_001406703.1| regulatory protein VanR [Campylobacter hominis ATCC BAA-381]
 gi|153805086|gb|ABS52093.1| regulatory protein VanR [Campylobacter hominis ATCC BAA-381]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPG 59
           + +L+IEDD   A  +   L  E FN+ VT+  +  + +      FD +ILDL L  + G
Sbjct: 2   INVLMIEDDSEFAQLLAEYL--EKFNIKVTNYEDPYLGISAGIKNFDLMILDLTLPGMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R  K   P+ I S  S + DKV GLQ GADDY+ KP++ +E+ ARI +++RR 
Sbjct: 60  LEVCKEIR-EKYDIPIIISSARSDVSDKVVGLQIGADDYLPKPYDPKEMHARIMSLIRRY 118

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  AQ    V  D +  +D K  E+  H   + LT  EY+++E L  + + ++++E  + 
Sbjct: 119 KRTAQKEENVVVDSAFRIDEKRHEIFFHDAPLTLTPAEYEILEYLIKQHSFSVSREQLVY 178

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H    +D+ + K +DV I +LR K+ + +    +I +V G GY L
Sbjct: 179 HCKSLKDK-DSKSLDVIIGRLRAKIGDNSKNPTHIFSVRGIGYKL 222


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|120555441|ref|YP_959792.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325290|gb|ABM19605.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 242

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L+ED+   A  I+ +L  +  +      G+  +       +D IILD  + D+ G 
Sbjct: 1   MRIALLEDEHEQAQHIQSILSEKGHHCDSFPTGQSFLGAVLHRSYDLIILDWQIPDMTGI 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EVL  +R       P   L+   S  D VR L +GADDYI+KP    ELVARI A+ RRS
Sbjct: 61  EVLENIRAQLNWPVPAVFLTQRDSETDIVRALDAGADDYIAKPARAAELVARINALARRS 120

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++V G   +N + + + + G  + LT K++ +   L   +   LT+EM L  +
Sbjct: 121 NPEIEKEVLVYGPFEINTNQRIILLHGEPLTLTDKDFDLTLFLFQNQGRLLTREMLLERV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +   + +D  + +LR++L         I+T++ RGY L
Sbjct: 181 WGLTRDINTRTVDTHMSRLRRRLGLNPENGFRIKTIYQRGYRL 223


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F+V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R +R  K S  P+ +L+      DKV  L+ GADDYI KPF+ +ELVAR++A++RR  
Sbjct: 66  LCREVR--KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYE 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  +  +   DL V+L    V  +G  + LT KE +++  L    N   T++  L ++
Sbjct: 124 PESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 184 WGYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227


>gi|312958810|ref|ZP_07773329.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286580|gb|EFQ65142.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  ++  L    + V     G DG+ L + + ++ +ILD+ L +  G+
Sbjct: 1   MRILVVEDEQKTADYVQQGLSESGYVVDCAPSGVDGLHLARQHRYELVILDVNLPNTDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR       V +L+    + DK++GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLEQLR-RDGDQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSE 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ +L  +    +T+   ++ ++
Sbjct: 120 HIPLPEVLRVADLELDPRRHRAYRGNRRIDLTTKEFALLHVLMRQTGEVMTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ + +  K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSISRLRAKVDDQSEVK-LIHTIRGVGYVL 220


>gi|302387280|ref|YP_003823102.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197908|gb|ADL05479.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK E F        ++ + +    + D ++LDLGL D  G EV
Sbjct: 8   ILVVEDDTQIRNFICYALKQEGFPYATASTAQNALSILVSQQIDLMLLDLGLPDFDGMEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R      P+ ++S     ++K   L SGADDY++KPF+  EL+ARIR  +R     
Sbjct: 68  IKKVREWS-EMPIIVVSARDQDKEKAAALDSGADDYLTKPFSATELMARIRVALRHLYKI 126

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+++  G LS++L+   V ++G  +H+T  EY ++ L        LT +  L  +
Sbjct: 127 GITKTQTVLSVGGLSIDLEKHLVYLEGAVLHVTPLEYHLLTLFLRNPGKVLTTQYILKEI 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y      + + +   +  LR+K+        YI T  G GY L
Sbjct: 187 YGVGYGTDTQALRALMAGLRRKIEPTPAKPRYILTEIGVGYRL 229


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNHQAGAVQKLDFDG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDI 57
           MRILL++D+  L +S+   L  E + V   D   +GI+   L + + +D +ILD  L   
Sbjct: 1   MRILLVDDEVELTNSLSRALSREGYTV---DKAYEGIQAGTLAQNHHYDLLILDWMLPHQ 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+   LR  +  TP+  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++R
Sbjct: 58  SGLEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLR 117

Query: 118 RS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R          + +  GDL  + + +        I L+ KE Q++E L       LT   
Sbjct: 118 RPPILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTE 177

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              HL+   D +P   ++   I  LR+K+    G    + TV+G+GY
Sbjct: 178 IHQHLWGETDKKPSSNVLAAQIRLLRRKI-ELPGAVPLVHTVYGKGY 223


>gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 252

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D  I+D  L    G 
Sbjct: 28  MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGTENAYDVAIIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 88  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 148 TPDQDVLYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+      +  ++T+ G GY++++  
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDF-SQPLLKTIRGAGYMIKDEG 252


>gi|126699566|ref|YP_001088463.1| two-component response regulator [Clostridium difficile 630]
 gi|255101086|ref|ZP_05330063.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306951|ref|ZP_05351122.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251003|emb|CAJ68832.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  L   +    +++ FNV+     ++G+ +      D IILD  L D  GF
Sbjct: 1   MNLLIIEDDINLNEGLFYAFENDGFNVFKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R  K   P+ +L+   S  D+V+GL+ G DDYI+KPF+   L AR++  +R+ +
Sbjct: 61  DVCQIIR-EKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-K 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + +   G   + LD K ++V  ++  + L+  EY+++  L   K   L KE  L+H+
Sbjct: 119 SNNKVIYSNG---IKLDQKLLKVYKNKECLELSSVEYKLLSYLIENKGQILLKEQILHHI 175

Query: 179 YDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D  +   +  I+ V I +LR K+ +      YI+T +G GY+  E
Sbjct: 176 WDSEENYVDDNIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYLWNE 221


>gi|77456488|ref|YP_345993.1| osmolarity response regulator [Pseudomonas fluorescens Pf0-1]
 gi|77380491|gb|ABA72004.1| DNA-binding response regulator [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G  +  +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEEENVTFGDYVLSLATRELK-RGDEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|46908857|ref|YP_015246.1| DNA-binding response regulator KdpE [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092300|ref|ZP_00230091.1| DNA-binding response regulator KdpE [Listeria monocytogenes str. 4b
           H7858]
 gi|226225229|ref|YP_002759336.1| two components response regulator KdpE [Listeria monocytogenes
           Clip81459]
 gi|254824961|ref|ZP_05229962.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           J1-194]
 gi|254852022|ref|ZP_05241370.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           R2-503]
 gi|254931053|ref|ZP_05264412.1| DNA-binding response regulator KdpE [Listeria monocytogenes
           HPB2262]
 gi|255519675|ref|ZP_05386912.1| two components response regulator KdpE [Listeria monocytogenes FSL
           J1-175]
 gi|300763564|ref|ZP_07073562.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           N1-017]
 gi|46882130|gb|AAT05423.1| DNA-binding response regulator KdpE [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47019279|gb|EAL10021.1| DNA-binding response regulator KdpE [Listeria monocytogenes str. 4b
           H7858]
 gi|225877691|emb|CAS06405.1| Putative two components response regulator KdpE [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258605318|gb|EEW17926.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           R2-503]
 gi|293582596|gb|EFF94628.1| DNA-binding response regulator KdpE [Listeria monocytogenes
           HPB2262]
 gi|293594199|gb|EFG01960.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           J1-194]
 gi|300515841|gb|EFK42890.1| DNA-binding response regulator KdpE [Listeria monocytogenes FSL
           N1-017]
 gi|328468159|gb|EGF39165.1| two components response regulator KdpE [Listeria monocytogenes
           1816]
 gi|328469688|gb|EGF40613.1| two components response regulator KdpE [Listeria monocytogenes 220]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ +++ I  +L + +++V     G++ +E    +  D ++LDLGL D+ G +V
Sbjct: 7   VLIVEDEEGISNFISAVLTASDYSVIKAVNGKEALEQTASHSPDVVLLDLGLPDVEGLDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +RV     P+ ++S      +KV  L  GADDYI+KPF   EL+ARIR  +R  +  
Sbjct: 67  LRDIRVWS-KVPIIVVSARDHEREKVTALDLGADDYITKPFGTSELLARIRTALRHIQPS 125

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++      +I   DL ++ D + V++    IH T  EY+++ LL+      LT +  +  
Sbjct: 126 SKEAPNDHIIRIQDLYIDDDRRLVKMGDKEIHFTPIEYKILLLLARHAGKVLTHDFIIRE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G    E + + V +  +R+K+        YI T  G GY + E
Sbjct: 186 IW-GPYPSENQALRVNMSNIRRKIEQNPAEPAYILTEVGVGYRMAE 230


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     ++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEDAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|288935482|ref|YP_003439541.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|288890191|gb|ADC58509.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 16/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  L+ EN++V +T  G  G+++   ++ D I+LD+ L  + G E
Sbjct: 5   RVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR  K   PV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RRS  
Sbjct: 65  VLAGLR-RKNDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNQ 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R  +  + VT  ++  +D  T       + LT  E+ ++  L    +   ++
Sbjct: 124 TETKEEILRWQSLEVNVTAIVASIVDGDTTP---RTLDLTPTEFSLLTTLMRSPSRPFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  L H     +  E +++D  I  LRKKL  AAG    +  V G GY  R+
Sbjct: 181 QHLLEHCLPESEALE-RVVDTHIYNLRKKL-EAAGISGVLVNVRGVGYRFRQ 230


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 20  KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  + S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 80  TLEEIR-KEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++         L  KE+ ++   +  +   LTK+   
Sbjct: 139 FNQQAGAIQKLNFDG-LQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 198 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 241


>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 109/225 (48%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F V +   G +G+ L    ++  II+DL L  + GFE
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------- 114
           +   +R  K   P+ I+S      DK+R    GADDYI+KPF+  ELVAR +A       
Sbjct: 64  LCSQIRQVK-EVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  R    + + I    L ++  ++ V V+   +  T +E+ ++E L+   N    K   
Sbjct: 123 LTARQAEPSNAEIHIRGLVIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      ++  + V I KLR+K+        YIETVWG GY
Sbjct: 183 FERIWGMDSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGY 227


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L     +    +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + I   D      + ++   + V +    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|94986248|ref|YP_605612.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94556529|gb|ABF46443.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 221

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A+ + L L    + V   D   +G+   +    D I+LDLGL D  G +
Sbjct: 5   RILVIEDDLDIANVLRLDLTDAGYAVEHADSAMNGLIRAREDHPDLILLDLGLPDFDGGD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR    + P+ +L+   ++++KVR L  GADDY+ KPF+ +EL+AR++  +R+   
Sbjct: 65  VVQRLR-KNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELIARVKVQLRQRVS 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + S+   GDL+++   + V  +   + L+ KE+ ++ LL  +     +++     ++ G
Sbjct: 124 ESLSM---GDLTLDPQKRLVTYKNEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R      ++DV +  LR KL +   G   + TV G GY LR
Sbjct: 181 RLPEGSNVVDVHMANLRAKLRD-LDGYGLLRTVRGVGYALR 220


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 122 IETAVAEENASSGTQELTI-GNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 181 TREHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 233

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 16/228 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +A +IE+ +K++N+ V+    G+  I++ +      II+D+ +  + GF  
Sbjct: 6   ILIVEDDKQIADAIEIYMKNQNYGVFKAHNGQLAIDIFEKEVIHLIIMDVMMPVMDGFTA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R +  + P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR    
Sbjct: 66  IMKIRQSS-TVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYVNF 124

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          LI  GD++++ + K + V G  +  T  EY+++ LL     +   K   
Sbjct: 125 SMKKESDKNSKLISIGDIALDDERKEISVLGAPVKTTPIEYKILYLLM----SNAGKVFS 180

Query: 175 LNHLYDG-RDEPEVK--IIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++ +Y+   +EP      + V I ++R+KL        Y++ VWG GY
Sbjct: 181 IDEIYEKVWNEPAYSPDTVAVHIRRIREKLEINPKEPKYLKVVWGIGY 228


>gi|303240446|ref|ZP_07326963.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592011|gb|EFL61742.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I + +D+  + + I+  L  E + V   + G   +E       D +I+D+ + ++ GF +
Sbjct: 7   IYIADDEVNICNIIKSFLVKEGYEVETFNDGRKILEAFNKRPADMLIIDIMMPELDGFSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
             ++R  K + PV I+S   +  DK+ GL  G+DDY++KPF+  EL+ARI++I RR    
Sbjct: 67  CSSIR-EKSNVPVIIVSAKDTETDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIEMD 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   D+ +N D K  E+    I LT  E+ ++  L++ KN  +++   L+ 
Sbjct: 126 KIKNEKVQKIKIADVVINSDKKQAEINDKNIGLTNMEFALLYYLAVNKNKAVSRSELLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +E E +  D  I ++RKKL++  G    IETVWG G+
Sbjct: 186 VWGFDNEVETRATDDMIKRVRKKLTD-VGSALKIETVWGYGF 226


>gi|300865429|ref|ZP_07110229.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300336568|emb|CBN55379.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 224

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYE--FDAIILDLGLTDI 57
           MRILL+EDD    + +E +  + +   ++ D  EDG I  C   +  +D +ILD  L  +
Sbjct: 1   MRILLVEDD---VNQLEPLQTALSEAGHIVDGIEDGAIAQCILSQRDYDLLILDWLLPKV 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + +  R    + PV +L+   +  DK+ GL +GADDY+ KP +  EL+AR+RA+ R
Sbjct: 58  SGLSLCQQYRRLGKTAPVLLLTAKDTTVDKISGLDAGADDYLIKPADVFELLARVRALGR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS       +   DL+++L   T+E     + L+ +E+Q +E L       L++      
Sbjct: 118 RSPVWQGDTLQVEDLTLHLSTLTMERGDRSMLLSRREFQFLEYLMRHPRQVLSRGQIEQA 177

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L++   EPE   I   + +LR++L  A G   ++ET++G GY L  +
Sbjct: 178 LWEWGSEPESNAITTLVRRLRQRL-QAVGAVTWLETIYGMGYRLNPD 223


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + ++  P+ +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ L   +    +   F+V     GE  +   K   FD ++LDL L D+ G E+
Sbjct: 5   VLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMSGTEI 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    ++  PV +++      D++ G + GADDY+ KPF+  EL+ R RAI++RS 
Sbjct: 65  CRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRSE 124

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A +      G L V+  A    VQ   I LT  E++++ +L  R+   L++++ L+ +
Sbjct: 125 SPASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +   + +D  + ++R+KL  AAG  +YIETV G GY  R
Sbjct: 185 WGSHVDVTARNVDTHVKRVREKL-GAAG--DYIETVRGVGYRFR 225


>gi|254975553|ref|ZP_05272025.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092941|ref|ZP_05322419.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314682|ref|ZP_05356265.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517356|ref|ZP_05385032.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650463|ref|ZP_05397365.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683573|ref|YP_003214858.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687233|ref|YP_003218367.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520433|ref|ZP_07406780.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209736|emb|CBA63511.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213250|emb|CBE04771.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  L   +    +++ FNV+     ++G+ +      D IILD  L D  GF
Sbjct: 1   MNLLIIEDDINLNEGLFYAFENDGFNVFKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R  K   P+ +L+   S  D+V+GL+ G DDYI+KPF+   L AR++  +R+ +
Sbjct: 61  DVCQIIR-EKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIRK-K 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + +   G   + LD K ++V  ++  + L+  EY+++  L   K   L KE  L+H+
Sbjct: 119 SNNKVIYSNG---IKLDQKLLKVYKNKACLELSSVEYKLLSYLIENKGQILLKEQILHHI 175

Query: 179 YDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D  +   +  I+ V I +LR K+ +      YI+T +G GY+  E
Sbjct: 176 WDSEENYVDDNIVSVNIRRLRVKVEDDPSNPKYIKTAYGMGYLWNE 221


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|312131700|ref|YP_003999040.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311908246|gb|ADQ18687.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 220

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  +   ++  L+ ENF V +   G+ G+ +     +D IILD+ L    G EV  
Sbjct: 1   MIEDDHQVCAIVKKGLEEENFEVTIATDGDTGLSMASEENYDLIILDIMLPKKSGLEVCT 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RGHA 123
            +R    + P+ +L+ + + E+   GL  GADDY+ KPF   EL+ARI +++RR+ R   
Sbjct: 61  RIRHTS-NIPILLLTALGTAENVAEGLNRGADDYLVKPFKFIELIARINSLLRRAGREEE 119

Query: 124 QSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +S +     + +N  +KTV V    + LT  E++++ LL    N   +++  L  +++  
Sbjct: 120 KSEVYKFSGVVLNNTSKTVTVNDQEVALTSTEFKLLLLLMKMPNKVYSRQEILERVWEVN 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +    ++DV+I  LRKKL +  G    I TV G GYVLRE
Sbjct: 180 FDLGTNVVDVYINYLRKKL-DKHGSPKIIHTVVGMGYVLRE 219


>gi|255324934|ref|ZP_05366042.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           tuberculostearicum SK141]
 gi|255297994|gb|EET77303.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
           tuberculostearicum SK141]
          Length = 237

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD  L  ++ +  K+  + VY    G +G+++   ++ D +ILD+GL D+ G EV
Sbjct: 8   IVIVDDDPRLLTTLSINFKARGYEVYSASTGAEGLQVVSQHQPDVVILDMGLPDMDGREV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R    + PV IL+  S        L  GADDY++KPF+ EEL+AR+R  +R     
Sbjct: 68  LDGIR-GWSAIPVLILTARSDPLFSASALDRGADDYVTKPFSMEELLARVRVALRHGSPQ 126

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S      ++  GD+ +++   ++   G  +HLT  E+ ++  L       + KE  L 
Sbjct: 127 HPSAQREATMVRAGDVLIDVPRHSITKAGKPLHLTPTEWGVLTTLLRAHGGLVRKEDLLA 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++    E +   + ++  +LR+KL        Y+ T  G GY
Sbjct: 187 EIWGPGFEGQSHYLRIYTSQLRRKLETDPSDPQYLLTEPGLGY 229


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  +   +   L++  + V  ++ G++G++     + D +ILDL L D+ G E
Sbjct: 4   RVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVDGLE 63

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+      + P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR+
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      + +I  GD+ ++     V  +G  + LT KE+++++LLS      LT++  L+
Sbjct: 124 QQPEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++      E + +DV I  LRKK+ +      YIETV G GY L++  +
Sbjct: 184 KVWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLKDKGE 233


>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 124/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   I+L L++E + V     G + ++    +  + +ILDL L DI G  V
Sbjct: 5   ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLMLPDISGENV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R +G+
Sbjct: 65  CERIR-KESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKGN 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  ++++   
Sbjct: 124 QCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI--S 181

Query: 182 RDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           RD   +  +IID  I  +R KL   +    YI+T+ G GY
Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGY 221


>gi|89892848|ref|YP_516335.1| hypothetical protein DSY0102 [Desulfitobacterium hafniense Y51]
 gi|89332296|dbj|BAE81891.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 256

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 29/236 (12%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGE-------DGIELCKFYEFDAIILDLGLT 55
           IL+++DD  +   I ++L+ E F V V    +        G++L         ILD+ + 
Sbjct: 32  ILVVDDDPEIREIIHILLQREGFAVQVAADADTALATLTPGVDLA--------ILDIMMP 83

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              GFE+   +R    + P+  L+  +   DK  G   G DDY+ KPF+  EL++R++A+
Sbjct: 84  GKSGFELCSEIR-KTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKAL 142

Query: 116 VRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RR          ++  +  GDL ++LD  TV   G +I LT  EYQ+  LL L +    
Sbjct: 143 LRRYLIYQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVF 202

Query: 170 TKEMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +    H++    EP + +    I V I  LR+KL    G   YI TVWG+GY +
Sbjct: 203 SAKEIYEHIW---QEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYI 255


>gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 246

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQMDRLLAREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQSA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELK-RGDEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|226948577|ref|YP_002803668.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841560|gb|ACO84226.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  GF+ 
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKEGYNVIATDSIKESQQKLNKEKVDLIILDINLPDGNGFDY 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+   
Sbjct: 64  CLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSND 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-- 179
              ++I + D+   ++   +E  G  I L+  E ++++         L+KE  + +L+  
Sbjct: 123 CDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNI 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DG    E   + V I ++R+K+        YI+T+ G GYV +E
Sbjct: 183 DGEFINE-NTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLR-QRSYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQST 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A       +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ 
Sbjct: 122 EAAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + K +DV + +LR KL        YI TV G GY
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGY 223


>gi|120402752|ref|YP_952581.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955570|gb|ABM12575.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLR-ADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADIDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGY 223


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL +    D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 130 SVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|313158184|gb|EFR57589.1| putative response regulator ArlR [Alistipes sp. HGB5]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           M+IL++ED+ +L    E+M+++     YV +   D    ++    Y++D I+LD+ L D 
Sbjct: 1   MKILIVEDEPSLR---EIMVQTLRREQYVVEQAADYASALDKIAGYDYDCILLDIMLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++L  L+  +    + I+S   S++DK+ GL+ GADDY+ KPF+  EL ARIR++VR
Sbjct: 58  SGLQLLEELKRQRRQAGIIIISARDSLDDKIEGLELGADDYLPKPFHLAELSARIRSVVR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN-----TTLTKE 172
           R +   Q  +  G++ +  D++ VE+ G  + L  KEY ++     R N     TTL + 
Sbjct: 118 RHQRGGQESLDAGNVRLFPDSRRVEIAGREVELLRKEYDILYYFMSRPNHMIDKTTLAEA 177

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ +H+ D  D      +   +  LR++L +A      I  V+G GY L
Sbjct: 178 VWGDHI-DQAD--NFDFVYAQMKNLRRRLHDAQADIE-IRAVYGFGYKL 222


>gi|229074992|ref|ZP_04207994.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
 gi|229097096|ref|ZP_04228062.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|229103157|ref|ZP_04233843.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|229116059|ref|ZP_04245452.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228667394|gb|EEL22843.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228680262|gb|EEL34453.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228686325|gb|EEL40237.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228708049|gb|EEL60220.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 107/207 (51%), Gaps = 8/207 (3%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           L++E +N++    G++ I++   YE D +ILD+ +    G EV + +R    + P+ +LS
Sbjct: 22  LRNEGYNIFKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENN-TVPILMLS 80

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LIVTGDL 132
             +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS     +       +I     
Sbjct: 81  AKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSTFQNAATQKKDDGIIRIRTA 140

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++    TV+V    I LT  E+ ++ LL+       + E     +++       K + V
Sbjct: 141 EIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGSNKTVMV 200

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGY 219
            I  LR KL     G+ +I TVWG GY
Sbjct: 201 HISNLRDKLETVMNGEKFIHTVWGVGY 227


>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 239

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIR ++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+++ + V     GE+ + L      + ++LD+GL D  G E
Sbjct: 12  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGAELVVLDIGLPDRDGHE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIRA++R++  
Sbjct: 72  VLREIRQWS-NVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S+   G L ++L  + V + G  I L+ KEY ++ LL       +T+   L  +
Sbjct: 131 GSTVEESVFDDGRLHIHLGLREVTLDGEAIPLSRKEYALLALLLKHAGRVVTQPQLLREV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 191 WGPTHEEDTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVG 230


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 14/226 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ LK+E   V     G + +E+    E   I+LD+ +  + G   
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDGISA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ ILS  S   DK+ GLQ GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  THRIREEK-NIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I    L+++ ++K V VQG  + LT  EY+++ELL     T   +   +N 
Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLM----TNAGRVFSIND 180

Query: 178 LYDG-RDEPEV---KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y+    EP       + V I K+R+K+        Y++ VWG GY
Sbjct: 181 IYERVWKEPGYNAENTVAVHIRKIREKIEIDPKNPRYLKVVWGIGY 226


>gi|300788479|ref|YP_003768770.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797993|gb|ADJ48368.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A SI   L++E F V V   G   +E     E D ++LD+ L    G E
Sbjct: 9   RVLVVEDDVTIAGSIAARLRAEGFGVEVVHDGPAAVEADTASEPDLVVLDVMLPGFDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           V R ++  +   PV +L+  +   D + GL  GADDY++KPF+   L AR+ A++R   R
Sbjct: 69  VCRRIQ-GRRPVPVLMLTARADETDMLVGLGVGADDYLTKPFSMRVLTARVHALLRRVER 127

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A + IV GDL +++D + V   G    LT  E+ ++   + R      +E  L+ +
Sbjct: 128 SASVAGTRIVLGDLEIDVDQRRVARAGVAAQLTPIEFDLLVHFARRPRVVQPRERLLSEV 187

Query: 179 YDGR---DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D          + +D  I  LR+KL     G + I TV G GY L
Sbjct: 188 WDWDVHGTSAGTRAVDSHIKALRRKL-----GADLIRTVHGVGYAL 228


>gi|116254730|ref|YP_770566.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259378|emb|CAK10513.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 228

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L  E ++V     G   I        D I+LD+ +  + G E
Sbjct: 3   KVLLIDDDAELTTLLQEYLVEEGYDVVTDTDGRAAIAAAAGNTVDIIVLDIMMPRMNGIE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           VL+  R+ K+S  PV +L+      D++ GL  GADDY+ KP +  EL AR+RAI+RR+ 
Sbjct: 63  VLQ--RIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G +   I  G L ++  ++  E +G  + LTG E+ +IE+L+      ++K+    
Sbjct: 121 QPAAGTSTDTIRAGKLVIHPGSRIAEWRGESLELTGTEFSLIEVLARSAGQLVSKQDISK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     P  + IDV I  +R+KL     G+++I++V G+GY L
Sbjct: 181 RAFGKPLTPFDRRIDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|325067577|ref|ZP_08126250.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +      E + V     G+  +E  +    D I+LDLGL DI G +V
Sbjct: 12  VLLVEDDPAISEPLARAFGREGYEVLTHGTGKGALE--EVSAADIIVLDLGLPDIDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ P+ +L+  S   D V GL +GADDY++KPF   EL+AR+RA VRR+ G 
Sbjct: 70  ARQVRAQGLTIPILMLTARSEDSDLVVGLDAGADDYVTKPFRLAELLARVRAQVRRASGE 129

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A +  +  G++ V++ A    V    + LT +E++++ +L       ++ E  L  ++  
Sbjct: 130 ATEDELSVGEIRVDVAAHRAFVGSRELQLTTREFELLRVLVRAGGKVVSGEDILKEVWGE 189

Query: 182 RDEPEVKIIDVFICKLRKKLSN 203
                 + + + +  LR+KL +
Sbjct: 190 DPTGSPQTLQMHVTWLRRKLGD 211


>gi|307300188|ref|ZP_07579973.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307316459|ref|ZP_07595902.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306897657|gb|EFN28400.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306905077|gb|EFN35660.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           IL+++DD+ +   +   LK     V       DG ++  F E    D IILDL +    G
Sbjct: 7   ILIVDDDREIRELVSAYLKKNGLRVTAV---ADGRQMRTFLEANTVDLIILDLMMPGDDG 63

Query: 60  FEVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
             + R LRV +  +TP+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI+A++RR
Sbjct: 64  LVLSRELRVGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAVLRR 123

Query: 119 SR--------GHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +R          A  L+  G   ++  A+  ++  G  I L+G EY+++ +        L
Sbjct: 124 ARMLPANLQVSEAGQLLRFGQWKLDTTARHLIDADGTAIALSGAEYRLLRVFVDHPQRVL 183

Query: 170 TKEMFLNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  LN L  GR E E+  + ID+ + ++R++L + A    YI+TV   GYV 
Sbjct: 184 NRDQLLN-LTQGR-EAELFDRSIDLLVSRVRQRLGDDAREPTYIKTVRSEGYVF 235


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +E++L  E + V +   GE+ + L      D IILD+ +    GF 
Sbjct: 8   KILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLAD-STIDLIILDVVMPVKTGFV 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K + P+  L+  +   DKV G  +G DDY+SKPF+  EL++R+++++RR   
Sbjct: 67  ACSEIR-EKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    +++ T +L VNLD + V + G  + LT  EY ++ L+   +    + E  
Sbjct: 126 YQGKEKEKEPNILKTKELCVNLDTQDVTLNGQPVFLTTIEYSILVLMLKNRKKVFSSENL 185

Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++D +        I V I  LRKKL        YI+T WG+GY +
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYI 233


>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 237

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++I+DD+ +   I+  L+ + F+    + G+D  ++ +    D IILDL L D  G +
Sbjct: 4   KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LRV KI  P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI +I RR   
Sbjct: 64  ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123

Query: 122 HAQSLI--VTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +  V+G      +   N   +T++     I LT  E+ ++++     N  L+++ 
Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183

Query: 174 FLNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  L  G+ E +V  + IDV I ++RK +        Y++T WG GYV 
Sbjct: 184 IM-QLAKGK-ELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231


>gi|89055982|ref|YP_511433.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88865531|gb|ABD56408.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 116/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LL+ED+  LA S+   L  +   V       +  +     E+D I+LD+ L D  G 
Sbjct: 1   MRFLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L   R  ++ TPV +L+  S I D+V  L  GADDY++KPF+  EL AR RA++RR  
Sbjct: 61  DRLATWR-GRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++ +  GD   +  A T+      + L  +E +++E+ +      L+K   ++ L+ 
Sbjct: 120 GAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLFS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +     I+V++ +LR+KL +  G K  IETV G GY
Sbjct: 180 HDADVTENAIEVYVGRLRRKL-DEVGVK--IETVRGAGY 215


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 123/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  + +    ++  I+LD+ + +  G EV
Sbjct: 7   VLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR  K +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS   
Sbjct: 67  CAELREKK-TTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ L+V   L+++ DA  V   G  ++LT KEY+++  L+   +    +E  
Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGY 219
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY
Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGY 231


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 4   KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +   + + + +  + I DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQSHDLSIIMVTAKAAEI-DKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++ N  DE
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVK-NPTDE 234


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++E+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R  + S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIR-KENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGTMQKLDFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 10/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   ++  L  +NF V     GE+ +++  FYE      IILD+ +  +
Sbjct: 12  LKILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDI--FYEEKDIALIILDVMMPKM 69

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+ +L+  S   D++ G   G D+YISKPF+ + LVAR+ AI+R
Sbjct: 70  DGWEVCREIR-KNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILR 128

Query: 118 RS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+ + + + +I  G + ++  A    V G  + L+ KE++++      +   L++E  LN
Sbjct: 129 RTGQNNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILN 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     + + ID  + KLR K+ +      YI+TVWG GY
Sbjct: 189 SVWNYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGY 228


>gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
 gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402]
          Length = 223

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 15/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   + L  +SE + VY+ +   + ++       D I+LD+ + ++ G E
Sbjct: 3   KILMIDDERDILEMLALQFQSEGYLVYLANDANEALKQLSVLP-DLILLDINMPEMNGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R   ++ P+  L+   S  D + GL  G DDYI+KPF+ +EL AR++A +RR   
Sbjct: 62  LCTMIR-EHVNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLRREKR 120

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SRGH      T +L ++   +TV ++  +I  + KE+++I+LLS+       +E  
Sbjct: 121 SSHKSRGH-----FTRELIIDYSQRTVIIKNKKIDFSNKEFEIIKLLSMNAGQIFDREKI 175

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++      +  +I   I K+R KLS  +  + Y+ETVWG GY
Sbjct: 176 YEVVWGFEANGDSAVIKEHIRKIRMKLSRYSENE-YLETVWGVGY 219


>gi|157364554|ref|YP_001471321.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157315158|gb|ABV34257.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 217

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ ++  I   LK ++  V   D  E   +  +   FD I+LDL L D    E 
Sbjct: 4   ILVVEDEQDVSDVICRYLKLDSHEVKTADSIEKMYDYIEKECFDLIVLDLMLPDGDAMEE 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +RV    T V +L+ +    +K+ GL+ GADDY++KPF+  ELVAR+RA++RR    
Sbjct: 64  IPTIRVMCPKTYVIVLTALREDRNKILGLEMGADDYVTKPFHPRELVARVRAMLRRKNMF 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+  +   D+ + ++ + + +    + L+ KE++++ +         T+   L++++   
Sbjct: 124 AERELTHKDMKLLINERILLINDESVELSAKEFEILLMFFENPKKVFTRSEILDNVWQNE 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  E +I+DV++  LRKKL     GK  + TV G GY L
Sbjct: 184 DRSE-RIVDVYMSLLRKKL-----GKERLVTVHGVGYKL 216


>gi|315604746|ref|ZP_07879809.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313758|gb|EFU61812.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 219

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +   L++  F   V   G + +E         ++LD+GL DI GFEV
Sbjct: 4   ILIVEDERRIASFVAKGLRAAGFVPEVYSTGAEAVEAALQGRGALMLLDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R   +  PV +L+  +S+ D+V GL+ GADDY+ KPF+ EEL+AR+R  +R     
Sbjct: 64  LEQIRGQGVEMPVIMLTARTSVSDRVAGLEGGADDYVPKPFSFEELLARVRLRLREEAPV 123

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              L +T G L ++L ++ V V    + L+ +E+ ++E         L++E  L+ ++  
Sbjct: 124 PGGLTLTRGSLVLDLKSRRVRVGERSVDLSAREFTLLETFMRNPGQVLSREQLLSAVWGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    ++DV++  LR+K+     GK+  ETV G GY L
Sbjct: 184 DFDGGSNVVDVYLSYLRQKI-----GKDRFETVRGMGYRL 218


>gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     + D  ILD+ L    G  
Sbjct: 4   KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+K F   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKHTYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++      +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++ D         I V I  LR+K+++      YI+TVWG GY
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGY 227


>gi|219666111|ref|YP_002456546.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219536371|gb|ACL18110.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 29/236 (12%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGE-------DGIELCKFYEFDAIILDLGLT 55
           IL+++DD  +   I ++L+ E F V V    +        G++L         ILD+ + 
Sbjct: 7   ILVVDDDPEIREIIHILLQREGFAVQVAADADTALATLTPGVDLA--------ILDIMMP 58

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              GFE+   +R    + P+  L+  +   DK  G   G DDY+ KPF+  EL++R++A+
Sbjct: 59  GKSGFELCSEIR-KTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKAL 117

Query: 116 VRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RR          ++  +  GDL ++LD  TV   G +I LT  EYQ+  LL L +    
Sbjct: 118 LRRYLIYQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVF 177

Query: 170 TKEMFLNHLYDGRDEPEVKI----IDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +    H++    EP + +    I V I  LR+KL    G   YI TVWG+GY +
Sbjct: 178 SAKEIYEHIW---QEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYI 230


>gi|15674899|ref|NP_269073.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|19745942|ref|NP_607078.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21910129|ref|NP_664397.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28896172|ref|NP_802522.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50914043|ref|YP_060015.1| two-component response regulator [Streptococcus pyogenes MGAS10394]
 gi|56808909|ref|ZP_00366618.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903325|ref|YP_280128.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910493|ref|YP_282043.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94990247|ref|YP_598347.1| two-component response regulator [Streptococcus pyogenes MGAS10270]
 gi|94994168|ref|YP_602266.1| two-component response regulator [Streptococcus pyogenes MGAS10750]
 gi|139473961|ref|YP_001128677.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209559227|ref|YP_002285699.1| DNA-binding response regulator [Streptococcus pyogenes NZ131]
 gi|251782240|ref|YP_002996542.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|306827529|ref|ZP_07460812.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13622039|gb|AAK33794.1| putative two-component response regulator [Streptococcus pyogenes
           M1 GAS]
 gi|19748100|gb|AAL97577.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS8232]
 gi|21904321|gb|AAM79200.1| putative two-component response regulator [Streptococcus pyogenes
           MGAS315]
 gi|28811422|dbj|BAC64355.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50903117|gb|AAT86832.1| Two-component response regulator [Streptococcus pyogenes MGAS10394]
 gi|71802420|gb|AAX71773.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853275|gb|AAZ51298.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94543755|gb|ABF33803.1| Two-component response regulator [Streptococcus pyogenes MGAS10270]
 gi|94547676|gb|ABF37722.1| Two-component response regulator [Streptococcus pyogenes MGAS10750]
 gi|134272208|emb|CAM30454.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540428|gb|ACI61004.1| DNA-binding response regulator [Streptococcus pyogenes NZ131]
 gi|242390869|dbj|BAH81328.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|304430327|gb|EFM33353.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782]
 gi|323127092|gb|ADX24389.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 222

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  +++ +   +  + ++V V   G++ I+  K   +D +ILD+ +    G 
Sbjct: 1   MKILLAEDEWQMSNVLTTAMTHQGYDVDVVFNGQEAIDKAKDNAYDIMILDIMMPIKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R +   + + +L+ M+ I D+V GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 61  EALKEIRASGNCSHIIMLTAMAEINDRVTGLDAGADDYLTKPFSLKELLARLRSMERRVE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    +++N++ + +   G+ I L  KE +++  L L +   L  +    H++ 
Sbjct: 121 SFTPQVLQFAGVTLNINEQELSA-GNAIRLASKEGKLMAFLMLNQGKYLDTKTLYQHVWS 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
            +++ +  I+ V+I  LR+KL
Sbjct: 180 DQEDYDTSIVWVYISYLRQKL 200


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L +E + V+      D +E  K    D  +LD+ + +I GFE
Sbjct: 4   KILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEISGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK++GL  GADDYI+KPFN  ELVAR++A +RR + 
Sbjct: 64  ICKIIR-EKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  S     +I    L ++ D+    +    ++LT  E+ ++  L   K   +T E    
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 183 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|192360772|ref|YP_001980561.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
 gi|190686937|gb|ACE84615.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ LA  +   L + +F V V + G   +   +      +ILDL L    G  +
Sbjct: 6   ILLVEDDRRLAQLVSDFLTANDFRVDVEENGNRVLRQVQNLNPSLVILDLMLPGKDGLTL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + LR  +   P+ +L+   S  D+V GL+ GADDY+ KP     L+ARIRA++RR   S
Sbjct: 66  CKELR-PQYKGPILMLTARDSDLDQVLGLEYGADDYVIKPAEPRVLLARIRALLRRYYQS 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + I  G L +    + V +    +HL+  E+ ++  L+      L+++     +Y
Sbjct: 125 DENTLANINFGQLHIQPSLRKVTLATEEVHLSSHEFDLLLTLAASAGNILSRDFLFQQIY 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +   + IDV I +LRKKL +       I+T+WG+GY+   +A
Sbjct: 185 NREYDGLDRTIDVRISQLRKKLQDDPNNPTRIKTIWGKGYLFIADA 230


>gi|94988366|ref|YP_596467.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94992248|ref|YP_600347.1| two-component response regulator [Streptococcus pyogenes MGAS2096]
 gi|94541874|gb|ABF31923.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94545756|gb|ABF35803.1| Two-component response regulator [Streptococcus pyogenes MGAS2096]
          Length = 222

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 117/201 (58%), Gaps = 1/201 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  +++ +   +  + ++V V   G++ I+  K   +D +ILD+ +    G 
Sbjct: 1   MKILLAEDEWQMSNVLTTAMTHQGYDVDVVFNGQEAIDKAKDNAYDIMILDIMMPIKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R +   + + +L+ M+ I D+V GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 61  EALKEIRASGNCSHIIMLTAMAEINDRVTGLDAGADDYLTKPFSLKELLARLRSMERRVE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    +++N++ + +   G+ I L  KE +++  L L +   L  +    H++ 
Sbjct: 121 SFTPQVLQFAGVTLNINEQELSA-GNAIRLASKEGKLMAFLMLNQGKYLDTKTLYQHVWS 179

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
            +++ +  I+ V+I  LR+KL
Sbjct: 180 DQEDYDTSIVWVYISYLRQKL 200


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ +   +   L+ E ++      G  G++L      D ++LDL L  + GFEV
Sbjct: 5   VLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R    + P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A +RRS   
Sbjct: 65  CRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAMA 124

Query: 120 --RG-HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +G  AQ      +  G + V+ +  TV   G+ + LT +EY +I  L+ +     ++E
Sbjct: 125 PAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSRE 184

Query: 173 MFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + H+++      +V+ +DV + +LR+K+ +      +I T  G GY+ 
Sbjct: 185 ALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGYLF 234


>gi|239982264|ref|ZP_04704788.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 13/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G EV
Sbjct: 1   MLVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLEV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR    
Sbjct: 61  CRRVQ-AQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 119

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A         ++  G+L ++   + V V    +HLT  E+ ++  L+      L++E  L
Sbjct: 120 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D  D    + +D  I  LR+K+     G   I TV G GY L
Sbjct: 180 AEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYAL 220


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L +E F V+    G   + L +  + D +ILD+ L  + G EV
Sbjct: 6   ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R L   + +  V +L+  +   DK+ GL  GADDY++KPF+  ELVAR++AI+RR+R  
Sbjct: 66  CRQLH-RETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRAA 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H + ++    L ++ + + VE  G R+ LT +E+ ++  L+       T+E  L 
Sbjct: 125 RVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELLQ 184

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++ G D   + +++DV I  LR+KL +   G   ++TV G GY
Sbjct: 185 RVW-GPDFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGY 227


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAI---ILDLGLTDIP 58
           RIL+++DD+ +   +   L++E F+V       DG+E  K  E + I   ++D+ + ++ 
Sbjct: 3   RILVVDDDRHILKLVGHYLRAEGFHVLA---ASDGVEAEKIVENEQIHLAVIDVMMPNMD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RR
Sbjct: 60  GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   ++  I  G ++++  +  +++      +  KE++++  L+       T+E  +  +
Sbjct: 120 SNQASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERI 179

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               YDG D    + +DV I +LR        G   + TV G GY L E  
Sbjct: 180 WQRDYDGSD----RTVDVHIKRLRDHFDEEKDGIRIV-TVRGVGYKLEETT 225


>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 245

 Score =  110 bits (276), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E  +   +D I LD+ +  + GF+
Sbjct: 20  RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R AK   P+ I++     +D V+  + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 80  ACERIR-AKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  G+L ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E  ++DV + +LR+K+         I TV G GY L
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKL 242


>gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
 gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
           M045]
          Length = 228

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRVRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G + ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 SSDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 18/234 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL+EDD+ +  SI L L+   + V     G  G+E  +    D +ILD+ L  + G 
Sbjct: 21  VRVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVMLPHLDGI 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R +    P+ ++S      D V GL++GADDY+ KP +   LVARIR+++RR+ 
Sbjct: 81  GLCRRIRESS-QAPILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRRAA 139

Query: 121 GHA------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
             A            +++ V  DL V+  A  V  QG  + LT  E +++   + +    
Sbjct: 140 PAADRDRDREEGPAREAVWVFRDLEVDTLALQVRRQGEPVALTPTELRLLLEFTAQPGVA 199

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D   E + +++D+ + +LRKK+     G +++ETV G GY  R
Sbjct: 200 LSRQRLLREVWDYGWEGDSRVVDLTVQRLRKKI-----GADHVETVRGHGYRFR 248


>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 226

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLTDIP 58
           +IL++EDD+A+A  + L LK      Y T +  DG+E  K  E  +   I+LD+ L    
Sbjct: 5   KILIVEDDEAIAAGLALNLKIAG---YQTTVVHDGLEALKRLEESSPHLILLDINLPSEN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  VL  LR +    PV ILS      DKV  L+ GADDYI+KPF   EL+AR+ A++RR
Sbjct: 62  GIGVLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRR 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L   G + V L+ ++V  QG  I LT  E++++  L    +   ++E  L  
Sbjct: 122 VGTQEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  +    ++ +D F+ +LR KL +      +  TV G GY
Sbjct: 182 VWK-QSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGY 222


>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V     GE+ +++         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIR-EKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+ +   +       L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  R       + V I +LR K+        +I+ VWG GY
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGY 228


>gi|224438071|ref|ZP_03659010.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Helicobacter cinaedi CCUG 18818]
 gi|313144515|ref|ZP_07806708.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129546|gb|EFR47163.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 222

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +   +   L S N       L  +  E         ++LD+ L    G  V
Sbjct: 2   IFILEDDEGILSLVLYALNSANLKAKGFSLPSEFWEAMAKESPSCVVLDVMLPQEDGLSV 61

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R    S   PV +L+ + S  DK++GL SGADDY++KPF+  EL+ARI+A++RRS 
Sbjct: 62  LHKMRQNHKSKNIPVIMLTALGSEFDKIKGLDSGADDYLTKPFSALELIARIKALLRRSH 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL  +    +V + G  +HLT KE++++ LL    N   ++E  L  ++ 
Sbjct: 122 TQNDCEMSYGDLKYSKTIHSVSIGGESLHLTLKEFELLGLLMSSTNRVFSREELLEIIW- 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G +    + ID+ I  LR KL        +I+T+ G GY    NA
Sbjct: 181 GYNISGTRTIDIHINTLRSKLGKYG---KHIKTIRGVGYQFNTNA 222


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A  +E+ LKSE F V+    G D ++       D  ILD+ L DI GF +
Sbjct: 5   ILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDISGFTL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   PV +L+  +   DK+ GL  GADDY++KPFN  ELVAR++A +RR   +
Sbjct: 65  CGEIR-REHHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRRYTHY 123

Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++    GD      L +N       +    ++LT  E+ ++ +L   +   ++ E    
Sbjct: 124 NENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAEKLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++  +       + V I +LR+K+        +I+TVWG GY
Sbjct: 184 SVWGEKYLDRNNTVMVHIRRLREKMGEPGRNPRFIKTVWGVGY 226


>gi|49081994|gb|AAT50397.1| PA1799 [synthetic construct]
          Length = 236

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 13/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R +R VA +  P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR  
Sbjct: 68  VCREIRRVANL--PILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHA 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN +
Sbjct: 126 PLPASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQI 185

Query: 179 ----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +DG +    + +DV I KLR KL +       I+TVWG+GY+ 
Sbjct: 186 RGIGFDGLN----RSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLF 228


>gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40]
 gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 246

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFSSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELK-RGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 10  KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 70  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 129

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 130 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 189

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N +  GR+   + + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 190 MN-MARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 241


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD  L   ++  L+ E F++     G+  IELC+    D I+LD+ L D  G +
Sbjct: 8   KILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLD 67

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R      + PV  L+  +S  D++ GL+ GA+DY+ KPF   EL+ARI+ +  R+
Sbjct: 68  ICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK-LQFRN 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L+  G + ++  +  V + G  + LT  E++++E L  R     ++E  LN ++
Sbjct: 127 QATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVW 186

Query: 180 DGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G+D     + +DV++ +LR+K+         I +V G GY  
Sbjct: 187 -GQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTF 228


>gi|320009833|gb|ADW04683.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED++ LA  +   L+   F V     G+  +     +++D ++LD  L  + G 
Sbjct: 9   MRVLVAEDEEILAELVATGLRRAGFAVDTVYSGDAALAYLGLHDYDVVVLDRDLPRVHGD 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L      T + +L+   ++ED+V GL  GADDY+SKPF   ELV+R+RA+ RRS 
Sbjct: 69  DVARRLVSTGSRTRILMLTASGTMEDRVEGLDLGADDYVSKPFEFPELVSRVRALRRRSA 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    + ++   +     G  + L+ KE+ +++LL      T++ E  L   +D
Sbjct: 129 RPVPPQLERHGIRLDSVRRAATRDGRDLDLSPKEFTVLQLLLEADGATVSAEELLERAWD 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V + KLR KL   A     I TV G GY L
Sbjct: 189 ANADPFTGAVRVCMSKLRAKLGEPA----LIRTVQGVGYAL 225


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 10/223 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           ++IL+++D+  +   ++  L  +NF V     GE+ ++L  FY       IILD+ +  +
Sbjct: 4   LKILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDL--FYSDKNIALIILDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+ +L+      D++ G + G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWEVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILR 120

Query: 118 RS-RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+ + + + ++  G + V+  A  V V+G  I L+ KE++++      +   L++E  LN
Sbjct: 121 RTGQTNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +++     + + ID  + KLR KL        YI+TVWG GY
Sbjct: 181 SVWNYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTVWGMGY 220


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++E+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V  +     L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNHQAGAVQKLDFDG-LQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|300853659|ref|YP_003778643.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433774|gb|ADK13541.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           + IL++EDD  +   +  +L+  N+NV     G +  E+C + Y+F  ++LDL L  I G
Sbjct: 5   INILIVEDDTDINKLLCKILEKNNYNVRGAFSGTEA-EMCIEKYDFQLVLLDLMLPGITG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +++  +R  K + PV ++S  ++ E K+  L+ GADD+ISKPF+ EE++AR+ A +RR 
Sbjct: 64  EKLIEKIRKVK-TMPVIVISAKTAQETKIEVLKLGADDFISKPFDVEEVLARVCAQLRRY 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    Q+++   +++++ +   V ++   + LT +E+ ++ELL        TK   
Sbjct: 123 MIFSNSNEKQNILTYKNMTLDRENHKVFIRSQEVLLTIREFCILELLMSYPKKVFTKANL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             H++  +   +   I+V +  LR K++       YI TVWG G+ +++
Sbjct: 183 FEHVWKDKFISDDNTINVHMSNLRSKIAKIDSNTEYIHTVWGIGFKMKD 231


>gi|291527568|emb|CBK93154.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 222

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 11/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           I ++EDD+++     + LK+ N   Y+    E+  E  K  +    D I+LD+ L D  G
Sbjct: 4   IYIVEDDESIREIETIALKNSN---YIVSAFENAKEFYKKLDELVPDLILLDVMLPDESG 60

Query: 60  FEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           ++++R LR   A    P+ +++  S+  D ++GL  GADDYI KPF+  EL+ R++A++R
Sbjct: 61  YDIVRKLRKRPATQDIPIIMVTAKSTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+      L+   DL ++ +   V V    + LT KEY+++ LL   +   +T+E+ +  
Sbjct: 121 RTAKEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   E E + +D+ I  LR KL +     + I+TV   GYV+
Sbjct: 181 VWDTDFEGETRTVDMHIKTLRHKLGDYG---SRIKTVRNVGYVI 221


>gi|237654033|ref|YP_002890347.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|237625280|gb|ACR01970.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 242

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/230 (34%), Positives = 116/230 (50%), Gaps = 16/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++EDD  +A  I + L    F       G   +E  +    D  I+DLGL D+ G +
Sbjct: 12  RIFVLEDDPEVARLICMSLAEYGFRCEQMRAGRQLLERARQLTPDLCIVDLGLPDMDGMQ 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R L+       V IL+G + + D+V GL+ GADDYI KPF   ELVAR+R+I+RR + 
Sbjct: 72  VVRELQDGSPCA-VLILTGRNDVTDRVLGLELGADDYIVKPFEPRELVARVRSILRRYQR 130

Query: 122 HAQSLIVTGDLSV------NLDAKT---VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A S    G+ S         DA     +   G  + L+  E  ++  L  R N  L++E
Sbjct: 131 SA-SADSAGERSTARFAGWTFDANRHALLAPDGREVPLSAAEAGLLATLLRRPNKILSRE 189

Query: 173 MFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L      RD +P  + IDV I +LR+KL +       I+TV+G GY+ 
Sbjct: 190 QLLGE----RDVDPFDRSIDVRISRLRRKLDDDPQNPRLIKTVYGAGYLF 235


>gi|225850705|ref|YP_002730939.1| two component transcriptional regulator, winged helix family
           [Persephonella marina EX-H1]
 gi|225645599|gb|ACO03785.1| two component transcriptional regulator, winged helix family
           [Persephonella marina EX-H1]
          Length = 214

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 119/221 (53%), Gaps = 8/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L  +IE  LK  N  V       +  ++    +FD I+LDL L    G 
Sbjct: 1   MHVLLVEDDPLLGETIEEYLKENNITVKWIQDDREIDDIFDLNQFDVIVLDLMLKYRKGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R   +  PV IL+  S I DK      GADDY++KPF+ +EL+ R++A+ +R  
Sbjct: 61  EILRDIRNRGVDVPVLILTAKSDIRDKEVCFNLGADDYLTKPFDPKELLLRLKALSKRK- 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H +  +  GD+++++D + V  +G  + L+   ++++ LL   + + +  E  L +++ 
Sbjct: 120 -HREYCVKIGDITIDIDNQMVYKKGEEVKLSRTAWELLYLLVKNRGSIVPTERILAYVW- 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G      +I+  +I +LRK L      K+ I T  GRGY L
Sbjct: 178 GDKPVGDEIVRTYIKELRKILP-----KDAIVTYKGRGYKL 213


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK +   +E+ LKS+ + V+    G +G+E+ +  E    I+D+ +  + G  +
Sbjct: 6   VLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMDGIRM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R  
Sbjct: 66  TMKLR-EKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRMF 124

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A         Q++ V G L +N     V V G  + LT  EY+++ LL        + E 
Sbjct: 125 AEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++ +       I V I  +R+K+ +      Y++ VWG GY + + A
Sbjct: 185 IYERVWNEK-AINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIEKQA 235


>gi|170743829|ref|YP_001772484.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198103|gb|ACA20050.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   +   L +E F+V +    ++ +   +    +A++LD+ L D  G EV
Sbjct: 4   VLVVEDDGDIRGMLARGLSAEGFSVNLAGSVDEALAAARERVPEAVLLDIMLPDGSGHEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R+LR       +  LS    + D+V GL  GADDYI KPF  +EL+AR+R  ++R R  
Sbjct: 64  CRSLREGGYPGAILFLSAKDEVSDRVDGLAVGADDYIVKPFAFDELLARLRTHLQRRRAA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++L+  G LS++L  + V        LT +E +++ +L    N  +T+    + L+ 
Sbjct: 124 GEPRTLLSAGRLSLDLATRQVRFGETTARLTQREAELLTVLMEHANRPVTRGDIFDRLWA 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
            +    + ++DV++  LR KL + A  G   I TV G+G++L
Sbjct: 184 NQGGLSLNVVDVYVGYLRTKLGDVARAGGPAIVTVRGKGFML 225


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   ++  L+   + V   + G D ++     ++D IILDL L  I G E
Sbjct: 3   KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  KI+T + IL+      DK+ GL+ GADDY++KPF+  E+VAR++A+ RR   
Sbjct: 63  ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
               S   +++    G+  VNLD+  +  + +  I LT KE++++     +K   L +E 
Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            LN+++      + +++D+ +  LR+K+        +++TV G GY
Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGY 228


>gi|15600078|ref|NP_253572.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103984|ref|ZP_01367902.1| hypothetical protein PaerPA_01005057 [Pseudomonas aeruginosa PACS2]
 gi|218893980|ref|YP_002442849.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|254238396|ref|ZP_04931719.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|254244220|ref|ZP_04937542.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|296391722|ref|ZP_06881197.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313109881|ref|ZP_07795813.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|9951159|gb|AAG08270.1|AE004901_12 two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|126170327|gb|EAZ55838.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|126197598|gb|EAZ61661.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|218774208|emb|CAW30025.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|310882315|gb|EFQ40909.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D ++LD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLR-KKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++DV I +LR K+ N    K  I TV G GYV  E
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDNPFPNK-LIHTVRGIGYVCEE 221


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L     +    +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + I   D      + ++   + V V    +  T KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQFTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630]
 gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291]
          Length = 228

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RI L+EDDKA+A ++ L+L SE F V +V+   E  +E+ K  +FD  ++D+ L D  GF
Sbjct: 3   RIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAK-NKFDLALIDISLPDGNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   ++  K   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S 
Sbjct: 62  TICTEIK-EKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +  + G L V+     V+  G+ + L+  EY+++ +      + +T+   L+ L+D
Sbjct: 121 RFGSTFEICG-LYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWD 179

Query: 181 GRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E      + V+I +LR+K+ +       I TV G GY L
Sbjct: 180 AAGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|89068725|ref|ZP_01156111.1| two-component transcriptional regulator [Oceanicola granulosus
           HTCC2516]
 gi|89045688|gb|EAR51750.1| two-component transcriptional regulator [Oceanicola granulosus
           HTCC2516]
          Length = 244

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 12/199 (6%)

Query: 41  KFYEFDAIILDLGLTDIPGF----------EVLRALRVAKISTPVCILSGMSSIEDKVRG 90
           +F+  D  +L+ G  D   F            +R LR A  + P+ +L    +       
Sbjct: 33  EFFRTDLSLLNRGGNDQRPFLLAAEGEATIAQIRLLRSAGCANPIIVLRDFRNSTHTAEA 92

Query: 91  LQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHL 150
           L +GADD ++ P    EL +R+ +++RR++GHA   +  G+++   D +   V G R+ L
Sbjct: 93  LNAGADDDMTIPLKVIELRSRLNSVLRRAKGHASESVTVGEVTAYFDGRDPVVAGTRVRL 152

Query: 151 TGKEYQMIELLSLRKNTTLTKEMFLNHLYD-GRDEPEVKIIDVFICKLRKKLSNAA-GGK 208
           + +E+ + + L+L  N  ++K    + +Y    ++P  K+IDV+ICK+RKK+  AA  G+
Sbjct: 153 SRREHAIFQHLALNPNRIVSKAAIYDAVYGMAEEQPLDKVIDVYICKIRKKIDAAAVSGR 212

Query: 209 NYIETVWGRGYVLRENAKD 227
            YIETV+GRGY L     D
Sbjct: 213 PYIETVYGRGYKLTAEHPD 231


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           IL+I+DD  L   +   L    + V V + GE+G+ E      +D I+LD+ +  + GF+
Sbjct: 20  ILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR +  STPV +L+      D++ GL+ GADDY+ KPFN  ELVARI+AIVRR   
Sbjct: 80  VLKKLRSSH-STPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHNL 138

Query: 119 -SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            S G A  Q L V G L ++  ++  +V    + LT  E+ ++ LL L     +TKE   
Sbjct: 139 SSSGGAVEQDLFVNGIL-LSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEIS 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     +   + ID+ +  LRKK+   A  +  I+T+ G GY+L
Sbjct: 198 LKILGKPLQAFDRSIDMHVSNLRKKIGAVAVDEK-IKTIRGVGYML 242


>gi|313905693|ref|ZP_07839054.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469517|gb|EFR64858.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 244

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/222 (36%), Positives = 117/222 (52%), Gaps = 11/222 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVT-DLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           I +IEDD AL   I L LK+  F       LGE     C     D IILD+ L D  GF+
Sbjct: 30  ITIIEDDTALNDGIVLALKNTEFTFTQNYSLGE----FCAGDPTDLIILDVNLPDGSGFD 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR  R A   TPV IL+      D+V GL  GADDYI+KPF+   L ARI  ++++ + 
Sbjct: 86  FLREYREAS-DTPVIILTAKDLETDEVTGLTLGADDYITKPFSLMVLRARIDKVLQKRQM 144

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-D 180
            + +     + S + D     V+G  + L+  E +++ LL   +  TLT++M ++ ++ D
Sbjct: 145 FSGNSYSDDEYSFDFDRMDFLVRGMPVELSKTEQKLLRLLIQNREQTLTRDMLIDAIWTD 204

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G +  +   + V I +LRKKLS        I+TV+G GYV R
Sbjct: 205 GAEYVDENALSVTIGRLRKKLS----ATERIQTVYGIGYVWR 242


>gi|256784713|ref|ZP_05523144.1| two-component regulator CutR [Streptomyces lividans TK24]
 gi|289768598|ref|ZP_06527976.1| two-component system response regulator CutR [Streptomyces lividans
           TK24]
 gi|289698797|gb|EFD66226.1| two-component system response regulator CutR [Streptomyces lividans
           TK24]
          Length = 217

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL+AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELIARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLEPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 229

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 3/212 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           +++  L+ + F V     G  G+   +    D ++LDLGL DI G +V + LR      P
Sbjct: 18  TVKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLR-RDSEVP 76

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTGDLS 133
           V +LS   ++ DK+ GL+ GADDY+ KPFN  EL ARIR ++RR  R    +    G++ 
Sbjct: 77  VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-DGRDEPEVKIIDV 192
           ++  +    +QG ++ LT  E+ ++EL       TLT++   +  + D +     + +DV
Sbjct: 137 LDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDV 196

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + +LRKK+         I TV G GY    N
Sbjct: 197 HVQRLRKKIEENPQAPRIILTVAGVGYRFEPN 228


>gi|189218771|ref|YP_001939412.1| DNA-binding response regulator KdpE (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185629|gb|ACD82814.1| DNA-binding response regulator KdpE (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 240

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+I+D+  +   ++L+L+S+ + V++    ++GI        + IILDL L D+ G 
Sbjct: 9   LSVLVIDDEPQILKLLKLILESKGYRVFLASTAKEGILETAQRRPNIIILDLLLPDMNGT 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R      P+ +LS +    +KV+ L SGADDY++KPF +EEL+ARIR ++RR +
Sbjct: 69  EVIQRIREWS-QVPILVLSAVDQEREKVQALDSGADDYLTKPFGEEELMARIRVLLRRLQ 127

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   +  TG L V+L  + V  Q   I LT  EY ++ LL       LT    L  ++
Sbjct: 128 PQADLQVFRTGGLEVDLVNRRVFFQKKEIRLTSTEYGILRLLVRHAGKVLTHRQILQEVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R   +V  + V++ +LR+K+   +     + T  G GY L
Sbjct: 188 GPRGVDQVHYLRVYMARLREKIEENSLQPKLLLTEPGIGYRL 229


>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 124/226 (54%), Gaps = 11/226 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ +++ +I   L+ E F V     G + +E    ++ D ++LD+ +  + G+
Sbjct: 2   IKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVMMPKMNGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L        + +L+  + I DKV GL+ GADDY++KPF+  E+VAR++A+ RR +
Sbjct: 62  EVCRKLEAGN-KPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRRRQ 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  G + + L ++TV V G    LT KE+ ++ LL+   +   ++E 
Sbjct: 121 IESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSREA 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            L  +++       + +D+ + +LRKKL    G    I+TV+G GY
Sbjct: 181 LLEQVWEMDFAGGTRTVDIHVQRLRKKLGEWQG---LIQTVYGIGY 223


>gi|163839669|ref|YP_001624074.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953145|gb|ABY22660.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 227

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  ++++ L +  + V+ +  G D +     +  D ++LD GL DI G EV
Sbjct: 4   VLVVDDEPQILRALQINLHAHGYTVHTSANGTDALASAAAHPPDVVVLDFGLPDIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----RR 118
           +  LR    + P+ +LS   + E+KV  L +GADDY++KPF  +E +AR+RA      + 
Sbjct: 64  IAGLR-GWTAVPIIVLSARHASEEKVAALDAGADDYVTKPFGLDEFLARLRAAQRRAEQD 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A   + T D  V+L AK V   G R+ LT  E+ ++ELL+      ++++  L  +
Sbjct: 123 TDAGASPTVATEDFVVDLQAKKVLRAGQRVRLTPTEWSILELLARNSGRLVSQQQLLTQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +      E + + V++ +LR+KL        ++    G GY
Sbjct: 183 WGPAYAKETQYLRVYMGQLRRKLEPDPANPRHLIAEAGMGY 223


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++   +   + VY    G+D ++       D I+LD+ + +I G E
Sbjct: 4   KILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKIS-KNPDIILLDINMPEIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V   +R   IS P+  L+      DK+ G ++GADDYI KPF+ +EL AR+ A +RR  R
Sbjct: 63  VCNRIR-DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q+ I    DL+++ + + + +  ++I L+ KE+ ++ELLS+       KE   + ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    +I   I K+R KLS     +NYIETVWG GY
Sbjct: 182 GYNSNGNSDVIMEHIRKIRIKLSKHT-LENYIETVWGVGY 220


>gi|326772116|ref|ZP_08231401.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326638249|gb|EGE39150.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 238

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 3/202 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +      E + V     G+  +E  +    D I+LDLGL DI G +V
Sbjct: 19  VLLVEDDPAISEPLARAFGREGYEVLTHGTGKGALE--EVSAADIIVLDLGLPDIDGLDV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ P+ +L+  S   D V GL +GADDY++KPF   EL+AR+RA VRR+ G 
Sbjct: 77  ARQVRAQGLTIPILMLTARSEDSDLVVGLDAGADDYVTKPFRLAELLARVRAQVRRASGE 136

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A +  +  G++ V++ A    V    + LT +E++++ +L        + E  L  ++  
Sbjct: 137 ATEDELSVGEIRVDVAAHRAFVGSRELQLTTREFELLRVLVRAGGKVASGEDILKEVWGE 196

Query: 182 RDEPEVKIIDVFICKLRKKLSN 203
                 + + + +  LR+KL +
Sbjct: 197 DPTGSPQTLQMHVTWLRRKLGD 218


>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 220

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL ++DD+A+ + +  +L  +  +V      E+ + L K   +D ++LD+ +    GFE
Sbjct: 3   RILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLAL-KLDRYDLVLLDVMMPGTDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R   +  P+  L+  SS +D V GL  GADDY+ KPF   EL AR+ A +RR R 
Sbjct: 62  LCRAIR-GSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLRRERR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G L ++L ++   V    + LT  E+ + E L+       +++  + ++   
Sbjct: 121 ERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVENVLGW 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             E     I V +   R KL   A G   I+TVWG GY
Sbjct: 181 DAESAASTISVHVANARAKLK--AAGAEPIDTVWGVGY 216


>gi|156936224|ref|YP_001440140.1| DNA-binding transcriptional regulator CpxR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156534478|gb|ABU79304.1| hypothetical protein ESA_04123 [Cronobacter sakazakii ATCC BAA-894]
          Length = 232

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E FNV V   GE  ++L        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLDMEGFNVLVAHDGEQALDLLDDSIDLLLLDVM-MPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQTH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHW 120

Query: 121 GHAQSLIVTGDLSVNLDA-------KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q     G  ++ +DA       +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNSDNGSPTLEVDALCLNPGRQEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWFKTLRGRGYLM 228


>gi|319891399|ref|YP_004148274.1| DNA-binding response regulator KdpE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161095|gb|ADV04638.1| DNA-binding response regulator KdpE [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323465422|gb|ADX77575.1| two-component response regulator KdpE [Staphylococcus
           pseudintermedius ED99]
          Length = 229

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 110/205 (53%), Gaps = 3/205 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD A+ H +++ L  + + V     G+D     +    D I+LDLGL DI G E
Sbjct: 4   KILVVEDDAAITHLLDVSLTLDYYEVITATNGKDADFQIRSKAPDIILLDLGLPDIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ +R      P+ ++S     +  V  L +GA+DY++KPFN +EL ARIR + R    
Sbjct: 64  LIKRIR-QTFDIPIIVISARLDEQTIVEALDNGANDYMTKPFNVDELRARIRVVQRLENM 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             Q  IV   G L V+  AKT ++    ++LT  E+ ++ELL       LT +  L  +Y
Sbjct: 123 QNQKEIVFENGPLVVSYQAKTAQIDNQLLNLTPHEFALLELLCRHVGKVLTYDTILKAIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA 204
              ++ E+  + V +  LR KL+ A
Sbjct: 183 GYVNQSEMPSLRVHMTSLRNKLTQA 207


>gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 233

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  +   L+SE F V      E+  ++     FD ++LD+ L    GF  
Sbjct: 4   ILIVDDDADLSAIVARYLESEGFAVERAASAEEAYDVLATRAFDLVLLDINLPGDDGFAA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             ALR A    P+   S  +S  D++ GL +G DDY+ KP++  EL+A + A++RRSRG 
Sbjct: 64  CAALRRAS-DVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRGR 122

Query: 123 AQSLIVTGDLSVN---LD--AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A      G L+     LD  A ++   G  I L+ KE+ +   L  R+   ++K+  L  
Sbjct: 123 AGGEGADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLAE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E E + + V +  LR K+ +      + +TV GRGY  
Sbjct: 183 VWGAFSEVEPQTVSVHMSWLRAKVEDDPAHPAHFKTVRGRGYCF 226


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 14  KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +   + + + +  + I DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 74  VAREVRQSHDLSIIMVTAKAAEI-DKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++ N  DE
Sbjct: 193 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVK-NPTDE 244


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNQQAGAIQKLNFDG-LQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|251791589|ref|YP_003006310.1| DNA-binding transcriptional regulator CpxR [Dickeya zeae Ech1591]
 gi|247540210|gb|ACT08831.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   +  +L+ E FNV V   GE  + +        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLRELLEMEGFNVVVAHDGEQALSVLDDSVDLLLLD-IMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ +R  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKEVR-QRYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 ------GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 G A +  +  D L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGEASAPTIEVDALRLNPGRQEASFDNEVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSTA 232


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V  +  GE+ +   +  +FD I++D+ +  I GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
            ++ +R    + P+  L+   + +DK++G  SG DDYI+KPF+  EL  R+ AI++R S 
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G     + LI   DL +NL   T+      I LT KE+ ++ LL+  K            
Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KL++      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 125/233 (53%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + +     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        +Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 122 IETAVAEENASSGSQELTI-GNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 181 TREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYMK 233


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F+V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R +R  K S  P+ +L+      DKV  L+ GADDYI KPF+ +ELVAR++A++RR  
Sbjct: 66  LCREVR--KFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYE 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  +  +   DL V+L    V  +G  + LT KE +++  L    N   T++  L ++
Sbjct: 124 PESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 184 WGYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227


>gi|258654798|ref|YP_003203954.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558023|gb|ACV80965.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+++L+  + L L+ E + V     G   I   + +  D ++LD+ L DI G 
Sbjct: 27  IRVLVVDDEQSLSELVSLALRYEGWEVRSAPDGLSAIAAARDFRPDLVVLDVMLPDIDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE---LVARIRAIVR 117
           EVLR LR      PV  L+    + D++ GL +G DDY++KPF+ EE    +  +     
Sbjct: 87  EVLRRLRADIERMPVLFLTAKDDVSDRIAGLTAGGDDYVTKPFSIEELVLRLRALLRRSH 146

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S IV GDL ++ D++ V      I LT  E++++  L       ++K   L+ 
Sbjct: 147 LALTTDSSTIVVGDLVLDEDSREVRRGDDLISLTATEFELLRFLMRNPKRVMSKAQILDR 206

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  I++++I  LRKK+   AG +  I T+ G GYVL+
Sbjct: 207 VWNYDFGGQANIVELYISYLRKKID--AGREPMIHTMRGFGYVLK 249


>gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 231

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIE--LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           RILL+EDD  L   ++  L LK + F+V +   GE+G++     EFD  ILD+ +    G
Sbjct: 3   RILLVEDDPNLGLLLQDYLQLKGK-FDVVLCADGEEGLKAFSKQEFDLCILDVMMPKKDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           F + + +R      P+   +  + +EDK      G DDYI+KPF  EEL+ RI A+++R 
Sbjct: 62  FTLGKEIRKINQEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALLKRV 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G AQ+    GD + +   + +   G +  L+ KE +++ LL L+KN  LT+E
Sbjct: 122 AVKEHTDPGPAQTQFQIGDYTFDYTTQLIHYDGLQQKLSTKEAELLRLLCLKKNAVLTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++   +    + +DVF+ KLRK L      K  I  V G+GY L  N
Sbjct: 182 EALLSIWHDDNYFNGRSMDVFLSKLRKYLREDP--KVEILNVHGKGYKLLVN 231


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  I L LK+ENF       G+D +      + D  ILD+ L DI GF 
Sbjct: 4   KILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R    + PV +L+  +   DK+ GL  GADDYI KPFN  EL+AR++A +RR   
Sbjct: 64  ILQKIR-ETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       + +I  G L +N            + LT  E+ ++ +L   +   ++ E   
Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  +   +    + V I  LR+K+    G   +I+TVWG GY
Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGY 227


>gi|188588874|ref|YP_001919596.1| two-component response regulator [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499155|gb|ACD52291.1| two-component response regulator [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 228

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ DDK     I   LK   + + +   G D   +   Y  + I++DL   ++ G +
Sbjct: 7   KVLIVNDDKDSNELINNYLKLSGYKIKIVLDGNDAKSMFLKYAPNVILVDLLTKNLNGMD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ +R  + + P+ +++  + + DKV     GADDYI KPF  EEL+ARI+AI+RR   
Sbjct: 67  FLKWIR-KQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARIKAIIRRCSI 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DLSVNL    V ++G+ I+L  KE++++  L    N   T++  L+ ++
Sbjct: 126 ESDKSDTISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNTNKVFTRKELLDEIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
              ++ + + +DV I +LR+K       +NY I T+W +GY
Sbjct: 186 GNHNKSDCRTVDVHIKRLREKFE---PNENYKIVTLWRKGY 223


>gi|167032265|ref|YP_001667496.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166858753|gb|ABY97160.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 253

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  L   +   L+   F V     G +G+E      FD +++D+ L  + G + 
Sbjct: 25  ILAIEDDPVLGAYLHEELQRGGFQVTWCRNGLEGLETAGRQIFDVVLMDILLPGLNGLDA 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR  + +TPV ++S + +  D++ G Q GADDY+ KPF+  EL  RI AI+RR    
Sbjct: 85  LAQLR-KRSATPVILMSALGAEADRISGFQRGADDYLPKPFSMAELQVRIEAILRRVALE 143

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +   L   G   +  D    +V+  GH   LT  E++++++L+      L+K      
Sbjct: 144 RRYQAPLEQAGCGELEFDEGLCDVRLDGHLAGLTPSEFRLLDILNRNLEEVLSKPFLYQQ 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         + +D+ + ++R+KL      +  I TVWG+GYVL
Sbjct: 204 VLQRGYSRHDRSLDMHVSQIRRKLKGIGYHERQIRTVWGKGYVL 247


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+ ++   L+ E + V     G  G+E  +  + D +ILD+ L  + GF V
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ IL+      D++ GL+ GADDY++KPF+  EL+AR+RAI+RRS   
Sbjct: 66  CRILR-QESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDRR 124

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +L   +  G + ++  ++        ++L+ KE+ ++  L   +   L++++ L  ++
Sbjct: 125 ISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + +DV I  LR+K+    G   YI+TV G GY
Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGY 224


>gi|295101441|emb|CBK98986.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 233

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +++L++ED+ ++   I L L+         D  E  + L +     DA ILD+ L  + G
Sbjct: 2   VKVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQRPGCDAAILDVMLPGMNG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           F +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ RR 
Sbjct: 62  FSLCETIRRTDQKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRV 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +   A + +V+G   ++ + + +   G  I LT  E+Q++EL        L +
Sbjct: 122 GRSASAEAGEQAPASLVSGSFVLDENRRVLLKAGKPIELTQVEFQIMELFFRNPGVALVR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 182 ERILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPAHILTVWGYGYRWEE 233


>gi|90411434|ref|ZP_01219445.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
 gi|90327647|gb|EAS43990.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
          Length = 262

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 20/237 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  LA  I + L  +N  V          +L K   F  +ILD GL D  G  +
Sbjct: 21  ILIVEDDNDLAELIGMHLILQNHQVVRATTITKADKLIKENHFSLVILDRGLDDGDGLTL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TP+ +L+   S +DKV GL+SGADDY++KPF+  E  AR+RAI+RR   +
Sbjct: 81  CHTLRQHENWTPILMLTARDSEKDKVEGLESGADDYLTKPFSVLEFQARVRAILRRESHN 140

Query: 123 A-------------------QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                               Q  ++  D L++   +  VEV    I+LT  E+ ++  L+
Sbjct: 141 ESSSSSQRIQQTESENTLDNQEPVLHFDGLAIKPQSHQVEVNQQPINLTATEFTLLHFLA 200

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            R     +K+  L+ ++          +   + +LR KL  +     YI T+WG GY
Sbjct: 201 KRPGRVYSKDELLSQVWHTDFSGYHHTVCSTVNRLRTKLETSHSKHKYIHTIWGVGY 257


>gi|65317712|ref|ZP_00390671.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 209

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 8/194 (4%)

Query: 33  GEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQ 92
           GE  ++L     +  +ILDL +    G EV R LR  K + P+ +L+      DK+ GL 
Sbjct: 8   GEVALQLFNQNNYSIVILDLMMPKXDGIEVCRKLR-DKTNVPILMLTAKDHEVDKILGLS 66

Query: 93  SGADDYISKPFNKEELVARIRAIVRR-----SRGHAQ--SLIVTGDLSVNLDAKTVEVQG 145
            GADDYI+KPF+  E+VAR++A++RR     S  + Q  + +    L++NL+  TV    
Sbjct: 67  IGADDYITKPFSIHEVVARVKALIRRFLVLGSNINVQEKTTLAFKGLTINLNTYTVHTNK 126

Query: 146 HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA 205
             I LTGKE ++++  +       TK     +++D     +   + V I KLRKK+    
Sbjct: 127 EEISLTGKELELLKFFTSNPGQVFTKTQLFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDP 186

Query: 206 GGKNYIETVWGRGY 219
               +I+TVWG GY
Sbjct: 187 SNPKFIQTVWGIGY 200


>gi|313897315|ref|ZP_07830858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium sp. HGF2]
 gi|312957685|gb|EFR39310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium sp. HGF2]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   I   LK  +F++     G   ++L    +FD +I+D  L  + G +
Sbjct: 3   RILLIEDEDNIRKIIAYDLKKADFDIVECGDGRTAVDLAMKEDFDVLIIDWMLPHVSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ LR   I     +L+      D +   + G DDYI+KPF+  EL+AR+ A ++R   
Sbjct: 63  IVKKLRSEHIDAIFIMLTARDDETDILYAFEQGVDDYITKPFSPRELLARVNAHLKRQNR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDLS+++  +   +    + LT KE+ ++E     K+  L+++  LN ++  
Sbjct: 123 KQEKRLSVGDLSMDMKRREAYIGERMMTLTKKEFDLLEYFIQNKDIVLSRDSILNDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + +I+DV + KLR KL+       +I +  G GY+L E
Sbjct: 183 DYDGDTRIVDVHVFKLRNKLN---ASHVHIRSSRGVGYLLEE 221


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 119/220 (54%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ++   I    ++    V       +  +  +  + D I+LD  L D  G + 
Sbjct: 6   VLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCAGLDW 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR LR   +  S PV +L+     +D+VRGL++GADDY++KPF+  ELVARIRA++RR  
Sbjct: 66  LRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRRKG 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A    +  G L ++ +     V G  + L+  E++ +++ +       ++   ++ ++
Sbjct: 126 GDALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + + + +DV + +LRK+L+  A   ++IETV G GY
Sbjct: 186 GVGADIDERTVDVHMLRLRKQLAGTAAA-DFIETVRGVGY 224


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +   +   LK+  +NV   + G   +E  +      I+LDL L ++ G E
Sbjct: 9   RILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLE 68

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+   A    PV +L+  +   D++ GL+ GADDY++KPF+  ELV R+++++RR+
Sbjct: 69  VCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRRA 128

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A+    +V GD+ ++     V + G  +  T  E++++ LL  R+     +E  LN 
Sbjct: 129 SNGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLND 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++      + + +D  I +LR+KL  +    +YIET+ G GY
Sbjct: 189 VWGYETVIDTRTVDTHIRRLREKLGKSG---SYIETIRGFGY 227


>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  + + +  +L++E+F       G +   L      D I+LDL L  + G E
Sbjct: 4   QILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKLLFMHNTPDLILLDLMLPGLSGEE 63

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L  LR    S  PV ILS   ++ DKV  L+ GADDYI+KPF  EE++ARI+A +RR+ 
Sbjct: 64  LLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRTA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   +L +  D++ V V G  + LT  EY ++ L         ++EM  + ++ 
Sbjct: 124 TSKK--LSCLNLELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVWH 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G    E   ++V +  LRKK+  A     YI TV+G G+ L
Sbjct: 182 GGYYGENNTVNVHVSNLRKKIKEADPENEYIRTVYGIGFKL 222


>gi|302384342|ref|YP_003820165.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302194970|gb|ADL02542.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +   L +  F+    D G++G+     +  DA++LDLGL D+ G +V
Sbjct: 8   VLVIDDEPQIHRFLSPALDAAGFDPKRADSGQEGLRAIALWNPDAVVLDLGLPDMDGKDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           L+  R    + P+ ILS      +K+  L  GA+DY+ KPF   EL+AR+RA++R++  R
Sbjct: 68  LKRAR-EFYAGPIVILSARDREAEKIEALDLGANDYVEKPFGVGELLARLRAVLRQTAPR 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G++S++LD + V   G  + LT KEY ++  L+      +     L  ++ 
Sbjct: 127 TAPTGPIAAGEVSIDLDHRRVTRSGEIVRLTPKEYDVLAHLARDAGKVIGHRDLLVAVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + + V + +LR+KL         IET  G GY L
Sbjct: 187 AAHREDTQYLRVVVGQLRQKLEADPARPTLIETEPGVGYRL 227


>gi|229830121|ref|ZP_04456190.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
           14600]
 gi|229791419|gb|EEP27533.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
           14600]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED++ +   +   L   ++ V     G+  +E      +D ++ D+ +  + G 
Sbjct: 1   MKVLVAEDEQEMRRVLVTALHMNSYEVVDVADGQAALEAACEGTYDCLVFDVMMPKMTGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR +R     TP+ +L+  + +ED++ GL +GADDY++KPF   EL+ARIR++ RR+ 
Sbjct: 61  EALRQIRAGGDMTPILLLTAKAEVEDRIDGLDAGADDYLTKPFALGELLARIRSLTRRNE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +   D++++++ + +  Q + I L  KE +++E L       ++ E     ++ 
Sbjct: 121 DFSPKNLTIADVTLDVEQQEIRAQ-NAIRLAPKEAKLLEYLLQNVGKDVSTEQIFERIWK 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E ++ ++ V+I  LR+K  NA  GK  IE   G  Y + E A
Sbjct: 180 DDQEADIGLVWVYISYLRQKF-NAITGKVAIEGDEGGSYRIHERA 223


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R ++ + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIR-SQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDIP-----YIKTVKGIGYKIDE 214


>gi|256378947|ref|YP_003102607.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923250|gb|ACU38761.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 18/225 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +   L +  F   V   GE  +       FD ++LD+GL  + GF 
Sbjct: 3   RILIAEDEERIASFVRKGLTANGFATTVVGDGEAALGYALGGGFDLVLLDIGLPVLDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI-------RA 114
           VL  LR    +TPV IL+   S+   V GL+ GADDY++KPF  EEL+AR+        A
Sbjct: 63  VLARLRERGCATPVIILTAQDSVRATVAGLEGGADDYMTKPFRFEELLARVRLRLRSPEA 122

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +V R      +++  G L+++L  + V+V G  + LT +E+ ++ELL       L++E  
Sbjct: 123 VVER------TVLRAGGLALDLRTRRVDVDGVAVDLTAREFALLELLLRHHRRVLSREQI 176

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+H++    +P   I+DV++  LR+K+     G   I T  G GY
Sbjct: 177 LSHVWGYDFDPGSNIVDVYVRALRRKI-----GAGRIRTARGMGY 216


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + ++  PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|254380472|ref|ZP_04995838.1| turgor pressure regulator [Streptomyces sp. Mg1]
 gi|194339383|gb|EDX20349.1| turgor pressure regulator [Streptomyces sp. Mg1]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 114/224 (50%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L  ++++ L++  F V     G   + L   ++ D I+LDLGL D+ G E
Sbjct: 3   RVLVVEDDPQLVRALKINLQARKFEVEEASDGGSALRLAASHKPDVIVLDLGLPDMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE------LVARIRAI 115
           V++ +RV     P+ +LS   + EDK+R L +GADDY++KPF+ +E        AR    
Sbjct: 63  VIKGVRVWS-KVPILVLSARHTSEDKIRALDAGADDYVTKPFSMDELLARLRAAARRHEA 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     S++ T + +V+L AK V      + LT  E+ ++E+L       +T+   L
Sbjct: 122 PAASPADEVSVVTTEEFTVDLVAKKVRRGERTVRLTPTEWHLLEILITHPGRLITQSKLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++          + V++ +LR+KL        Y+ T  G GY
Sbjct: 182 LEVWGPTYGDNTNYLRVYMAQLRRKLEADPSHPRYLITEPGMGY 225


>gi|331698935|ref|YP_004335174.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953624|gb|AEA27321.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFDTAVVGDGTKALPAVRELRPDVVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R ++   P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 64  VCRAIR-SESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARIRARVRRVEN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GD+ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEQLSIGDVDIDVPAHQVTRGGVPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGY 220


>gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1]
          Length = 255

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 1/217 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L+++  +     LG   ++  +    D +ILD+GL DI GFE 
Sbjct: 33  ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGLPDISGFET 92

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R    
Sbjct: 93  CRQLR-RFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAPR 151

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A++   T    ++     +  +   + LT  E+++++ L  +     ++E  L+ L    
Sbjct: 152 AEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDALGVAS 211

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D    + ID  I  LR KL   AG    I+T  G GY
Sbjct: 212 DVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 248


>gi|313682592|ref|YP_004060330.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313155452|gb|ADR34130.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPG 59
           ++LLIEDD +L   I   LKS  F        +  ++  L +   FD ++LDL L  + G
Sbjct: 4   KVLLIEDDLSLQELIISFLKSYGFETAGYADPKKALDRLLVEKEPFDIVVLDLMLPGMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+V + ++ +++  P+ I S  + I +K+ G   GADDY+ KP+   ELV RI A++RR 
Sbjct: 64  FDVAKMIK-SQLDIPIIISSARTDIGNKIYGYDLGADDYLDKPYEPRELVLRIEAVLRRY 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    L+V+ D +++   KTV ++G+ I LT  E+ +  LL   +   L+++  +  L 
Sbjct: 123 -GRKNELVVS-DFTIDETNKTVMMEGYPIDLTRIEFDIFILLIKNRGKNLSRDQIIGSL- 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              DE + + +D+ I  +R K+ + A    YI++VWG GY
Sbjct: 180 GLEDEMKHRTVDMHISNIRLKIGDDAKEPRYIKSVWGIGY 219


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 13/231 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V     G   +++    + D I+LDL L  + G +V
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMDGMDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R +R  ++ TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR  RG
Sbjct: 65  CREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRG 124

Query: 122 HA-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            A           Q L V GDL  + D  T    G  + LT +EY+++  ++      +T
Sbjct: 125 GASASESRPQEDKQGLRV-GDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVMT 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  L  ++      +V+ +DV I +LR+K+         I T  G GY++
Sbjct: 184 REHLLQAVWGFEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYIV 234


>gi|312140675|ref|YP_004008011.1| two component system response regulator mtra [Rhodococcus equi
           103S]
 gi|325675695|ref|ZP_08155379.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890014|emb|CBH49332.1| two component system response regulator MtrA [Rhodococcus equi
           103S]
 gi|325553666|gb|EGD23344.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F  YV   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMLTIVLRGEGFEPYVVGDGSQALTAVRETRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A+   P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLR-AESGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+ +++ A  V      I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEVLSIGDIMIDVPAHKVTRDNALISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 183 RHAADTRLVNVHVQRLRAKVEKDPENPEVVLTVRGVGY 220


>gi|116253935|ref|YP_769773.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115258583|emb|CAK09687.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +  +++S  F     + G     +    +FD I+LD  L    GF +
Sbjct: 9   ILIVEDDPPIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFSI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R LR A  S P+ +L+ +    D++ GL+ GADDY++KPFN  EL+ARI++I+RR S  
Sbjct: 69  CRRLRAA-CSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASYA 127

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           H Q      ++ +G     +D K+ ++    G ++ +T  E+ ++       N  LT+E 
Sbjct: 128 HHQEEALGPMMFSG---WRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+  + G   P  + ID  I ++R+K+        +I+TV   GY+ 
Sbjct: 185 LLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLF 232


>gi|126699934|ref|YP_001088831.1| two-component response regulator [Clostridium difficile 630]
 gi|255101465|ref|ZP_05330442.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307338|ref|ZP_05351509.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251371|emb|CAJ69203.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  L+ +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ +LS  S   DK+ GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIR-EKRNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++ +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++++       + I V I ++R+K+        Y++ VWG GY
Sbjct: 184 HEIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGY 231


>gi|91199718|emb|CAI78073.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|96771765|emb|CAI78347.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|114049989|emb|CAK51006.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|114050211|emb|CAK51244.1| putative two-component system regulator [Streptomyces ambofaciens]
 gi|117164310|emb|CAJ87852.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
 gi|126347422|emb|CAJ89130.1| putative two-component system regulator [Streptomyces ambofaciens
           ATCC 23877]
          Length = 253

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 11/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++ D   A S+   L+           G   ++     + D ++L L L D+ G E
Sbjct: 38  RILVVDADVDPADSLVTQLRRYGHEPLAVQCGSQALQ--AHADADLVLLALELPDLDGLE 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R A    PV I++   S  D V GLQ+GADDY++KP+   EL+ARI A++RR+  
Sbjct: 96  VCRAIR-AVSRVPVVIVTARQSELDCVLGLQAGADDYVTKPYGLRELMARIEAVMRRAHW 154

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+  I  G L ++++++ V V G  I LT KE+ ++ LL+   +T + ++  L  ++
Sbjct: 155 QPAARRYIRRGRLHIDVNSREVTVDGSGIPLTRKEFDLLCLLASHPDTVIPRKQLLKQVW 214

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D    + +D  +  LR KL    GG  +I TV G G+ L
Sbjct: 215 G--DSWSQRTVDTHVSSLRGKL----GGSGWIVTVRGVGFKL 250


>gi|78061758|ref|YP_371666.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77969643|gb|ABB11022.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 395

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D+  L + ++  L    F V     G+    L +   +D ++LDL +    G  
Sbjct: 164 RIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEPEDGLS 223

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+      DKV GL++GADDY++KPF  +ELVAR+RA++RR + 
Sbjct: 224 VCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQKM 283

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A    VT      G  + ++  +T+   G  + +   +  ++  L    N  +++E  L
Sbjct: 284 AAGEPTVTSQRLRFGAFTFDVGQQTLMRDGTPVEIHSAQMLLLHALGSSPNRAVSRENLL 343

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                GRD   + + +DV I +LR+ + +  G   +I+TVWG GY+L
Sbjct: 344 ARAR-GRDHAALDRSVDVQILRLRQIVEDDPGKPRFIKTVWGIGYML 389


>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
 gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILGVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 232


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GR+   + + IDV I +LR+          YI+TVWG GYV 
Sbjct: 186 MN-LARGREYSAMERSIDVQISRLRRMGEEDPAHPRYIQTVWGLGYVF 232


>gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELK-RGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|225575606|ref|ZP_03784216.1| hypothetical protein RUMHYD_03698 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037159|gb|EEG47405.1| hypothetical protein RUMHYD_03698 [Blautia hydrogenotrophica DSM
           10507]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD  + + I  +LK E F        + G+      + D +ILDLGL D  G 
Sbjct: 6   IHILVIEDDPQIRNFISYVLKQEEFLCTAVGTAQAGMSELVSGQIDLMILDLGLPDYDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV++ +R      P+ ++S     ++K   L SGADDY++KPF+  EL+ARIR  +R   
Sbjct: 66  EVIQKVREWS-EIPIVVVSARDQDQEKAAVLDSGADDYLTKPFSAVELLARIRVALRHLC 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    Q+     DLS++ +   V ++G  IH+T  EY ++ L        LT    
Sbjct: 125 RLGIGGQRVQTTAKVKDLSIDFEKHLVYLEGKEIHVTPMEYSLLNLFFHNIGKVLTTSYI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  +Y      + + +   +  LR+K+        YI T  G GY L EN
Sbjct: 185 LKEVYGVHYGTDTQALRALMAGLRRKIEKNPAKPQYILTEIGVGYRLSEN 234


>gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
 gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium HTCC5015]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 114/223 (51%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A ++   LK E FNV+   LG +  E    +  D I+LD+GL D  GFE
Sbjct: 4   QILIVEDEPAIADTLLYALKKEGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + + +R      P+  L+      D++ GL+ G DDY+ KPF+  ELVARI+AI+RR SR
Sbjct: 64  LCKRIRQNNTQVPIIFLTARKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAILRRASR 123

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +    +  + + + +   G  + LT  EY+++  L  R    L++   ++  
Sbjct: 124 SDDIAFQSVAPSLMQHDANRQCIVFSGEAVDLTLYEYRILLALLERAGHVLSRAQLMDAA 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +        + +D  I  +R +L +     + I T  G GY L
Sbjct: 184 WSDPSASFDRAVDTHIKGIRARLKSIRPDLDPIRTHRGLGYSL 226


>gi|116332987|ref|YP_794514.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098334|gb|ABJ63483.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 233

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTDI 57
           ILL+ED++ LA  +   L  E+F+V       DG    + Y+        ++LD  L  +
Sbjct: 5   ILLVEDEEGLASYVAKELTFEDFDVLT---ATDGAAAWEIYQQKKDRLLLVLLDWMLPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EVLR +R      PV +++    + DKV GL +GADDYI+KPF  EEL+ARIR I R
Sbjct: 62  DGMEVLRRIR-KHDELPVIMMTARDYLGDKVTGLDNGADDYITKPFEIEELLARIRVIQR 120

Query: 118 RSRGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R+  H   L  T   GDL++    + V+  G  I LT +EY ++  L        T++  
Sbjct: 121 RT-AHQSGLDQTYHLGDLTLVTKTRQVDRAGDTIQLTQREYDLLLFLMQHPGQVFTRDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L++++      +  ++DV+I  LR K+ + A   +   TV G GY L+E+   E
Sbjct: 180 LDNVWGVDFLGQQNVVDVYIGYLRNKI-DVAAAPHLFHTVRGVGYSLKEDEAHE 232


>gi|254975899|ref|ZP_05272371.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093285|ref|ZP_05322763.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315032|ref|ZP_05356615.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517702|ref|ZP_05385378.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650814|ref|ZP_05397716.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683895|ref|YP_003215180.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687555|ref|YP_003218689.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520712|ref|ZP_07407059.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210058|emb|CBA64143.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213572|emb|CBE05342.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  L+ +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ +LS  S   DK+ GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIR-EKRNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +      ++ +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++++       + I V I ++R+K+        Y++ VWG GY
Sbjct: 184 REIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGY 231


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 16/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D++ +   +E++L +E F V     G++ ++       D IILD+ +    G++
Sbjct: 8   RILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDRTDD-SIDLIILDVMMPQKSGYK 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K   P+  L+      DKV G   G DDY+SKPF+  ELV+R+++++RR   
Sbjct: 67  ACSEIR-EKTRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRRYYV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + +V  DL ++ DA+ VE+ G  + LT  EY+++EL+   +    + +  
Sbjct: 126 YQGSAPAEKSNKLVIRDLVLDKDAQNVEIGGEIVTLTDIEYRILELMMDNRKKVFSAQNI 185

Query: 175 LNHLYDGRDEPEV----KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              ++   +EP        + V I  LRKKL + +    YI+T WG+GY
Sbjct: 186 YESIW---NEPYFYSANNTVMVHIRNLRKKLKDNSQEPQYIKTAWGKGY 231


>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L+ S++ +L    F       G +G+   K   +D +ILD+ L  + G 
Sbjct: 1   MKILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGLIYAKSGAYDLLILDVMLPGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR  +   P+ +L+  S + D+V GL +GAD Y++KPF++ EL+A + A++RR +
Sbjct: 61  ALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRR-Q 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G+ S++LD+ T+      + L+ +E+ ++ LL   K   L KE  L+ ++ 
Sbjct: 120 GAEVNQLSFGNTSLDLDSGTLLCGERELRLSAREFDVMRLLMQAKGKNLRKEQILSRVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E     ++V++  LRKKL  + G    I +V   GY L  +++
Sbjct: 180 FDSEATENHVEVYVGFLRKKL-KSIGSDLSIVSVRRLGYHLESSSE 224


>gi|290509521|ref|ZP_06548892.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289778915|gb|EFD86912.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD   A  +E  L+ EN++V +T  G  G+++   ++ D I+LD+ L  + G E
Sbjct: 5   RVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR  K   PV +++ M    D++  L+ GADDY+ KP++  E+VAR++A++RRS  
Sbjct: 65  VLAGLR-RKNDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRSNQ 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + ++    L VN+ A    +         + LT  E+ ++  L    +   +++  
Sbjct: 124 TETKEEILRWQSLEVNVAAIVASIVDGDTTPRTLDLTPTEFSLLTTLMRSPSRPFSRQHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L H     +  E +++D  I  LRKKL  AAG    +  V G GY  R+
Sbjct: 184 LEHCLPESEALE-RVVDTHIYNLRKKL-EAAGISGVLVNVRGVGYRFRQ 230


>gi|270159060|ref|ZP_06187716.1| transcriptional regulatory protein OmpR [Legionella longbeachae
           D-4968]
 gi|289166104|ref|YP_003456242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Legionella longbeachae NSW150]
 gi|269987399|gb|EEZ93654.1| transcriptional regulatory protein OmpR [Legionella longbeachae
           D-4968]
 gi|288859277|emb|CBJ13211.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Legionella longbeachae NSW150]
          Length = 242

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 121/235 (51%), Gaps = 21/235 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ + H I   L    F    T  G +  +L +   FD IILD+ L  I G  +
Sbjct: 8   ILIIDDDQEITHLINDYLIKNGFRTTWTLNGLNIKQLLRENNFDLIILDIMLPGIDGLNL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R    S P+ +LS  +SI DKV GL+ GADDYISKPF+  EL+AR++A +RR++G 
Sbjct: 68  CQTIRQTH-SMPIIMLSAANSIADKVAGLELGADDYISKPFSSRELLARVKAQLRRTQGE 126

Query: 122 --------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                         H  + I+  +    +D  +V      I L+ +EY+++ +       
Sbjct: 127 LDIDRKKLTPLQQIHFDNWILDRNTHSLIDKDSVA-----IPLSHREYELLLIFLEHPGR 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  ++ LYD   + + + IDV I +LRKK+         + T+ G GY  +
Sbjct: 182 ILSRDQLMDLLYDKNFDSQDRTIDVLIGRLRKKIEIDPRNPRLLLTIRGGGYQFK 236


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 130/225 (57%), Gaps = 15/225 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEF--DAIILDLGLTDIP 58
           +IL+++DD+ +   I++ L+S     Y T++  DG      F+E+  D ++LD+ L  + 
Sbjct: 7   KILIVDDDENICEIIKMYLESSG---YSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R      PV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR
Sbjct: 64  GIDVLKWIRRDS-EIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + ++    L++++++  V  +   I +  KE++++  L+   N   T+E  L 
Sbjct: 123 YNTESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLC 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
            ++ G D P + + +DV I +LR+KL    G +++ IETVWG GY
Sbjct: 183 EVW-GYDYPGDSRTVDVHIKRLREKLQ---GDQDWQIETVWGVGY 223


>gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGSEGLAQAALAKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  ++   KV  L SGA+DY++KPF  +E +ARIRA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 GGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHVENTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  +  G+  +NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ +        YI+TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233


>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F+V ++  G++G  +    ++  ++LD+ L    GF 
Sbjct: 3   KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + RA+R  ++  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVR-KELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 120 -RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +G   +  ++   G L +      V V G  +HL  +E++++  L+       +KE   
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++D         + V + +LR+K+        +++TVWG GY     A+
Sbjct: 182 DRVWDLDAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232


>gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
 gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA-IVRRSR 120
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R  R
Sbjct: 63  ICKQVRLEK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 121 GHAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  ++  +     L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   + V +  +R+K+      K+YIET+WG GY
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGY 225


>gi|194468210|ref|ZP_03074196.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194453063|gb|EDX41961.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 124/246 (50%), Gaps = 26/246 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KF----YEFDAIILDLGLT 55
           M IL+IED+ ++   + +  K E +     +   DG+E   KF    +++D I+LDL L 
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWQY---EFAYDGVEAEEKFNAAPHKWDIILLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+
Sbjct: 58  KKDGMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKAL 117

Query: 116 VRRSRGHAQSL-------------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELL 161
            RR+  H   L             I T +  +N   + V + G  +  LT KE+ +++ L
Sbjct: 118 YRRT--HLNKLEEVQETDSDDTFDIQTKNFKMNTKTREVFLYGKPVSDLTPKEFDLLKTL 175

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +     T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY  
Sbjct: 176 ASKPRQVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKF 233

Query: 222 RENAKD 227
            +   D
Sbjct: 234 DDEGND 239


>gi|291515446|emb|CBK64656.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alistipes shahii WAL
           8301]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           M+IL++ED+ +L    E+M+++     YV +   D    ++    Y++D I+LD+ L   
Sbjct: 1   MKILIVEDEPSLR---EIMVRTLTREQYVVEQAADYAAALDKIAAYDYDCILLDIMLPGG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +L  L+  +    V I+S   S++DK+ GL+ GADDY+SKPF+  EL ARIR+++R
Sbjct: 58  SGLRLLEELKRRRSPAAVIIISARDSLDDKIEGLELGADDYLSKPFHLAELSARIRSVLR 117

Query: 118 R-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  RG  +SL   G++ +  D++ VEV G  + L  KEY ++     R N T+ K     
Sbjct: 118 RHQRGGYESLD-AGNVRLWPDSRRVEVAGREVELLRKEYDILHYFMSRPNHTVDKTALAE 176

Query: 177 HLY-DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ D  D+ +    +   +  LR+KL + AG    I  V+G GY L
Sbjct: 177 GVWGDHIDQADNFDFVYAQMKNLRRKLHD-AGADIEIRAVYGFGYKL 222


>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+++LA  +   L+ +   V     G   +   +    D ++LDL L  + G 
Sbjct: 3   VRVLVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALPGLDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       V +L+  S   DK+ GL  GADDY++KPF+  ELVARIRA++RR R
Sbjct: 63  EVCRQIRTFT-DCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPR 121

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   QS    G L V+L  + V V    + LT  E+ ++  LS + +T L +   +
Sbjct: 122 AAVAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      +  ++DV I  LR+KL +   G  +I TV G GY
Sbjct: 182 DAVWGADWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGY 225


>gi|229175929|ref|ZP_04303426.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228607523|gb|EEK64848.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 202

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 98/180 (54%), Gaps = 7/180 (3%)

Query: 46  DAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK 105
           D +ILD+ L D  G+E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN 
Sbjct: 24  DVLILDVMLPDTDGYELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNY 83

Query: 106 EELVARIRAIVRRSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
            EL+ RI+ + RR +      +  +I  G++++    + V V G  I LT +E+ + +L 
Sbjct: 84  AELILRIKNMTRRVKKAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLF 143

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    ++  L  ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 144 VSNPQRVFMRDELLEKVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 200


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +  +    ILD+ L  + G+E
Sbjct: 5   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ R+R+++R    
Sbjct: 65  VCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNL 124

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R +  ++  +  G  ++++ AK+       I +T  E+ +++     K   +T++  
Sbjct: 125 SQARPKDDSKENLTDGPFTLDIYAKSFYKNNKEIDVTPTEFTILQNFIKNKGKAMTRDEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +      + KI+DV I ++R K+ +      +IETVWG GY
Sbjct: 185 MTQTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEFIETVWGTGY 229


>gi|322615749|gb|EFY12669.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620597|gb|EFY17457.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322621776|gb|EFY18626.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627501|gb|EFY24292.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322630808|gb|EFY27572.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637974|gb|EFY34675.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642244|gb|EFY38852.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644965|gb|EFY41497.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651129|gb|EFY47514.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656615|gb|EFY52903.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658727|gb|EFY54984.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661831|gb|EFY58047.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322666423|gb|EFY62601.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672421|gb|EFY68533.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676271|gb|EFY72342.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679640|gb|EFY75685.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684350|gb|EFY80354.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323191832|gb|EFZ77081.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198900|gb|EFZ83998.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323200966|gb|EFZ86035.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209363|gb|EFZ94296.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212950|gb|EFZ97752.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216693|gb|EGA01418.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219810|gb|EGA04289.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226126|gb|EGA10343.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228779|gb|EGA12908.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323236610|gb|EGA20686.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239890|gb|EGA23937.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242063|gb|EGA26092.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247497|gb|EGA31452.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250598|gb|EGA34480.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259328|gb|EGA42970.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323263795|gb|EGA47316.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323265611|gb|EGA49107.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270056|gb|EGA53504.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++ L+ED++ +A ++   L+ E F V +   G   +E  +    DA+ILD+GL DI GFE
Sbjct: 5   QVWLVEDEQGIADTLIYTLQQEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + P+  L+  S   D++ GL+ GADDY++KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRRVKK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++ TG   +N  A  +   G  + LT  E+ +++ L L      +++  ++ ++
Sbjct: 125 FAAPSPVVRTGHFELNEPAAQIAWFGTPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E   + +D  I  LR KL       + I T  G GY LR
Sbjct: 185 SDAQETFDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  + + I+  L+   + V  ++ G +G E  K   +D IILD+ L  I GF 
Sbjct: 3   KILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  +   P+ IL+ +   +++++G    ADDYISKPF+ + L+ R+ A++RR   
Sbjct: 63  VCEMIR-KESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +L    +   D+ ++ +A    V    + LT KE++++ +L   K   LT+E+ LN 
Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+      + +++D  I  LR+KL     G +YI+T+   GY L  N
Sbjct: 182 LWGYDFYGDERVVDTHIKNLRRKL-----GVDYIQTIRKVGYKLEGN 223


>gi|209544121|ref|YP_002276350.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531798|gb|ACI51735.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+++ L++E FNV     GE  +        D  +LD+ +  + G E+
Sbjct: 8   IALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALHGLMTRPVDLAVLDIKMPRMDGMEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR  +   PV  LS      D++ GL+ GADDYI+KPF++  L+ RIRA++RR   +
Sbjct: 68  LQRLRT-RSHLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNEAT 126

Query: 120 RGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RG      A   +V GDLS++        +G  I LT  E+ +++ L+ R     +++  
Sbjct: 127 RGEPGGQAAAGSLVRGDLSLDETRHQCLWRGKDIQLTVTEFLLVKALAARPGLVKSRDQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  Y      + + ID  I ++RKK        N IET++G GY  +E
Sbjct: 187 IDAAYGENIYVDDRTIDSHIKRVRKKFRQVDDDFNQIETLYGIGYRYKE 235


>gi|221069658|ref|ZP_03545763.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714681|gb|EED70049.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55
           ++L+IEDD  LA  +   L +    V     G+ G+E  +  +       D +ILDL L 
Sbjct: 11  QLLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLP 70

Query: 56  DIPGFEVLRALRV---AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           D+ G EV R +R    A    PV +L+      D++ GL+ GADDY+ KPF   EL+ARI
Sbjct: 71  DMDGLEVCRRIRSMPGAPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARI 130

Query: 113 RAIVRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           RAI+RR  G +Q     +++  G L ++ DA+TV V   +  LT  ++ ++  L+ R   
Sbjct: 131 RAILRRKGGESQAAPANAVMRFGSLEIDRDARTVSVGEQQADLTSYQFDLLVALAERAGR 190

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LT++  +  +     E   + IDV + ++R  +         I TV G GYV 
Sbjct: 191 VLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVF 244


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +EL L +E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 10  IKILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+    +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A +R   
Sbjct: 70  EVCRMLKKMD-NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRNQF 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V G   ++   K +      + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGY 219
                E  I++V+I  LR KL++    KN+  I T+ G GY
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLND----KNHQLIRTLRGSGY 225


>gi|291525161|emb|CBK90748.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 220

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 124/219 (56%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+E +       G++G +  +   +D ++LD+ L +I G+E+
Sbjct: 4   ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNIYDLLLLDIMLPEINGYEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R     TPV I+S M  +++++RGL+ GADDYI KPF   EL+AR+  ++RR++  
Sbjct: 64  LDYVRRIG-DTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRRTQRM 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ L +  D++++  ++TV   G ++ LT KE+ ++  L   KN  L++      ++   
Sbjct: 123 AERLEIE-DVAIDPKSRTVIKAGEQVELTVKEFDLLYELMKNKNVALSRRRLYELVWQEE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + +D  + +LRKKL         I TV+  GY L
Sbjct: 182 YTGETRTLDSHVQRLRKKLD----WNQKIVTVFRIGYRL 216


>gi|126734733|ref|ZP_01750479.1| DNA-binding response regulator ChvI, putative [Roseobacter sp.
           CCS2]
 gi|126715288|gb|EBA12153.1| DNA-binding response regulator ChvI, putative [Roseobacter sp.
           CCS2]
          Length = 233

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L++DD+ +  S+ + L++E F V   + G   +E       D  +LD+ +  + G +
Sbjct: 3   RIALVDDDRNILTSVSMTLEAEGFEVETYNDGLSALEAFNKRMPDMAVLDIKMPRMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR  K S PV  L+      D+V GL+ GADDY+ KPF++  LV RIRA++RR   
Sbjct: 63  LLQRLR-QKTSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A           ++V G+L ++     V+ +G  + LT  E+ +++ L+ R     +++
Sbjct: 122 IAGEEIEETEDTKVMVRGELVMDPLRHAVKWKGKDVSLTVTEFLLLQALAQRPGFVKSRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  YD +   + + ID  I +LRKK+ N     + IET++G GY
Sbjct: 182 QLMDVAYDDQVYVDDRTIDSHIKRLRKKMRNTDNEFSAIETLYGIGY 228


>gi|34496346|ref|NP_900561.1| transcriptional regulatory protein qseB [Chromobacterium violaceum
           ATCC 12472]
 gi|34102199|gb|AAQ58565.1| Transcriptional regulatory protein qseB [Chromobacterium violaceum
           ATCC 12472]
          Length = 220

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +   +++ L+   F V     G   +       +DA++LDLGL  + G 
Sbjct: 1   MRILVVEDDAQIGDGLKMGLQQLGFAVDWLRDGRQALAALPAAPYDAVVLDLGLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A R A    PV +L+   ++ D+V GL +GADDY++KPF   E+ AR+RA+ RR  
Sbjct: 61  DILAAWRRAGRDEPVLVLTARDALADRVGGLDAGADDYLAKPFALSEVAARLRALTRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G LS++  A+T  + G  + LT +E  ++ELL   K   L++E+    LY 
Sbjct: 121 GQCGPLLSHGRLSLDPVARTATLDGALLELTARELALLELLLSSKGRVLSRELIEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E     ++V +  LRKKL     G  +I T+ G GY L E A
Sbjct: 181 WGQELGSNALEVHVHHLRKKL-----GAGFIRTLRGIGYTLGEPA 220


>gi|329945496|ref|ZP_08293236.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328528851|gb|EGF55793.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E     ++D ++LD  L  I G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGAGALEQVATNDYDILVLDRDLPVIHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +      T + +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVAEHPGTRILMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   GH I L+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIRLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P      V I  LR+KL    G    I TV G GY
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPWVIRTVPGAGY 215


>gi|327190838|gb|EGE57903.1| two component winged helix family transcriptional regulator
           [Rhizobium etli CNPAF512]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L  E ++V     G   I        D I+LD+ +  + G E
Sbjct: 3   KVLLIDDDAELTTLLQEYLVEEGYDVVTDTDGRAAIAAAAGNTVDIIVLDIMMPRMNGIE 62

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           VL+  R+ K+S  PV +L+      D++ GL  GADDY+ KP +  EL AR+RAI+RR+ 
Sbjct: 63  VLQ--RIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G +   I  G L ++  +++ E +G  + LTG E+ ++E+L+      ++K+    
Sbjct: 121 QPAAGVSTDTIRAGQLVIHSGSRSAEWRGEALELTGTEFSLLEVLARSAGQLVSKQEISK 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     P  + IDV I  +R+KL     G+++I++V G+GY L
Sbjct: 181 RAFGKPLTPFDRRIDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225


>gi|323170809|gb|EFZ56459.1| KDP operon transcriptional regulatory protein kdpE [Escherichia
           coli LT-68]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 112/219 (51%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++A+   +   L+ +   V+  +  + G+      + D IILDLGL D  G E 
Sbjct: 4   VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  S   DK+  L +GADDY+SKPF   EL AR+R  +RR    
Sbjct: 64  IRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRHSAT 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A    L+   D++V+L A+ +      +HLT  E++++ +L       LT+  FLN ++ 
Sbjct: 123 AAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQFLNQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                    + +++  LR+KL        +  T  G GY
Sbjct: 183 PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETGIGY 221


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  Q L   G L ++L+ ++V        L  KE+ ++   +  +   LTK+   
Sbjct: 122 FNHQAGAMQKLDFDG-LQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIY 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      +   I   I +LRKKL        YI+TV G GY
Sbjct: 181 EEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGY 224


>gi|254490909|ref|ZP_05104091.1| response regulator receiver domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463818|gb|EEF80085.1| response regulator receiver domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +  LLIEDD  LA ++   L  E+        G  G+ L    +FD ++LDL L  + G 
Sbjct: 2   LTTLLIEDDLDLAQTVIDYLSLESIRCDHASNGIAGLNLLAENQFDVLLLDLNLPRMDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR      PV +L+    I DK+ G ++G DDY+ KPF  +ELV R++A+ RR  
Sbjct: 62  NVCEQLRQQGKDIPVLMLTARDQINDKLAGFKAGTDDYLVKPFELDELVVRLKALARRRS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q L+   DL +NL  +TV      + L+   ++++E L       +TK+     ++ 
Sbjct: 122 GQVQ-LLSCADLEMNLHTRTVTRATQPLKLSPTSWRLLETLLRASPAVVTKQQLEVAVW- 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G + P+   + V +  LRK + +A      + T+ G G+ LR++ +  T
Sbjct: 180 GDETPDSNSLKVHLFHLRKAI-DAPFEHPLLHTIAGHGFALRQDNETTT 227


>gi|118472637|ref|YP_889637.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           smegmatis str. MC2 155]
 gi|118173924|gb|ABK74820.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           smegmatis str. MC2 155]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G + +     +  D I+LDLGL D+ G E
Sbjct: 8   RVLVIDDEPQILRALRINLSVRGYEVRTAASGAEALHSAADHRPDVIVLDLGLPDMSGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   +S PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA  RR+  
Sbjct: 68  VLHGLR-GWLSAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAARRAAV 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  ++
Sbjct: 127 PETDQPVIETTSFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLREVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 E   + V++ +LR+KL +      ++ T  G GY
Sbjct: 187 GPAYATETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGY 226


>gi|90579722|ref|ZP_01235531.1| transcriptional regulator [Vibrio angustum S14]
 gi|90439296|gb|EAS64478.1| transcriptional regulator [Vibrio angustum S14]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/208 (33%), Positives = 113/208 (54%), Gaps = 9/208 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED  AL  S+ +   +  F+    + G +G+ L    ++D IILDL L  I G 
Sbjct: 1   MKILIIEDSSALRRSLAVGFNNLGFSTDEAENGNEGLTLALDNDYDIIILDLMLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   I T + ILS  +  +D++ GL  GADDY++KPF+ +EL AR+ AI RR  
Sbjct: 61  TILNKLRQTGIETRIIILSAKTQSQDRIDGLMQGADDYVTKPFSFDELHARVVAISRR-- 118

Query: 121 GHAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              Q++ +T  + +     +L+ +T+    + + LT  E+++I+ L   +   LT  M  
Sbjct: 119 --CQAVSITNTIEIDGFLLDLNKRTLFYGNNDLELTPNEFKIIDYLFTHRGQILTASMIS 176

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSN 203
           +++ +  D      I+V I  +RKK  N
Sbjct: 177 DNITNNFDYISKNTIEVHISTMRKKAKN 204


>gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           642]
 gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELK-RGEEVHMLTTGEFAVLKALVMHAREPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|134295446|ref|YP_001119181.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134138603|gb|ABO54346.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 242

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 17/239 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  +   L    F+V V   G+  I   + +    +ILDL L ++ G E
Sbjct: 9   RVLLIEDDDRLAELVREYLDGYEFSVTVVRRGDLAIAAVREHRPALVILDLMLPNLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR-------- 113
           V R +R A  + PV IL+  + + D+V GL++GADDY++KP     LVAR R        
Sbjct: 69  VCRRIR-AFSNVPVLILTARADVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRAQP 127

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A  R         +  G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++ 
Sbjct: 128 AEPRTDDAAPVQALQFGELTISPPNRTVAWRGELVDLKTTEFNLLLILARAAGTVLSRDA 187

Query: 174 FLNHL----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  L    +DG D    + +D  I KLR++  + +     I+T+WGRGY+   +A DE
Sbjct: 188 ILKQLRGIEFDGID----RSVDAGISKLRRRFEDDSSEPQRIKTIWGRGYLFSPSAWDE 242


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDI 57
           +++L+++D+  +   ++  L  E + V     G + +++  FYE      +ILD+ +  +
Sbjct: 4   IKVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDI--FYEDKEIALVILDVMMPKM 61

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G++V R +R      P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+R
Sbjct: 62  DGWQVCREIRETS-KVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILR 120

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+ G+ A  +I  GD+ ++  A  V++    I L+ KE++++      +   L++E  LN
Sbjct: 121 RTLGNTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++++     + + ID  + KLR KL +      YI+T+WG GY    N
Sbjct: 181 NVWNYDYFGDARTIDTHVKKLRSKLGDRG---EYIKTIWGMGYKFEVN 225


>gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 214

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 12/215 (5%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           +  E + V     G + +E  +  + D IILDL L +I G EV + +R    S P+ +LS
Sbjct: 1   MTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPIIMLS 59

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS----------RGHAQSLIVT 129
              S  DKV GL+ GADDY++KPF+  EL AR++A++RR+              QSL + 
Sbjct: 60  AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTELASADNQEPETKLQSLQI- 118

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           GDL +  DA   +  G  + LT +E++++  L+      +T+E  L  ++      +V+ 
Sbjct: 119 GDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITREHLLETVWGYDYFGDVRT 178

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 179 VDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|323528132|ref|YP_004230284.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323385134|gb|ADX57224.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 251

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 16/240 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD---AIILDLGLTDI 57
           +++LL++DD  L   +    +       V     D + L +  + +    I+LDL +  +
Sbjct: 13  LQVLLVDDDAELRDLLRKFFQQRGIAFSVL---HDAVNLARRLQRERPSVIVLDLMMPGV 69

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G   L+ LR +  + PV +L+  +   ++V GL+ GADDY+ KPF  +EL+ARIRA++R
Sbjct: 70  DGLTALKQLRASGDTIPVIMLTARAEGVERVLGLELGADDYLGKPFMPQELLARIRAVLR 129

Query: 118 RSRGHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R +G  Q+ +V         G   ++   +T+  +G  + LTG EY ++E+L+L    TL
Sbjct: 130 R-QGPQQTTVVQKKRAPCRFGRFELDFSTRTLRCEGTPVKLTGGEYALLEVLALHPRETL 188

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV-LRENAKDE 228
           ++   +  L+    E   + IDV + +LR+ + + A     ++T+ G GY+ + + A DE
Sbjct: 189 SRTRLIELLHGPDAEVTERGIDVPVWRLRRLIEDDASNPRRLQTMRGVGYMFIPDGAADE 248


>gi|251780726|ref|ZP_04823646.1| two-component response regulator [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243085041|gb|EES50931.1| two-component response regulator [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ DDK     I   LK   + + +   G D   +   Y  + I++DL   ++ G +
Sbjct: 7   KVLIVNDDKDSNELINNYLKLSGYKIKIVLDGNDAKSMFLKYAPNVILVDLLTKNLNGMD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ +R  + + P+ +++  + + DKV     GADDYI KPF  EEL+AR++AI+RR   
Sbjct: 67  FLKWIR-KQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARMKAIIRRCSI 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DLSVNL    V ++G+ I+L  KE++++  L    N   T++  L+ ++
Sbjct: 126 ESDKSDIISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNSNKLFTRKELLDEIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGY 219
              ++ + + IDV I +LR+K       +NY I T+W +GY
Sbjct: 186 GNDNKSDCRTIDVHIKRLREKFE---PNENYKIVTLWRKGY 223


>gi|254453719|ref|ZP_05067156.1| response regulator protein [Octadecabacter antarcticus 238]
 gi|198268125|gb|EDY92395.1| response regulator protein [Octadecabacter antarcticus 238]
          Length = 200

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 3/188 (1%)

Query: 34  EDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQS 93
           ED I   +  E+D I+LD+ L D  G   L+  R  K  TPV IL+  S + D++  L  
Sbjct: 13  EDAIAFVQAGEYDLILLDIMLPDGDGRSFLKQHRAGKNDTPVIILTARSEVSDRISLLDL 72

Query: 94  GADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGK 153
           GADDY++KPF+  EL AR RA++RR  G +Q+ I  GD+  +     + V+ + I+L  +
Sbjct: 73  GADDYVTKPFDHAELQARCRAVLRRKAGTSQTTIKVGDVEFDPVGGYLTVKENVINLRNR 132

Query: 154 EYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213
           E +++E+L   K     K+  ++ L+   D+     ++V++ +LR+ L    G    I T
Sbjct: 133 ELRLLEILMNAKGQVFPKQKLVDRLFSYDDDVSENAVEVYVGRLRRHLE---GSSVQITT 189

Query: 214 VWGRGYVL 221
           + G GY L
Sbjct: 190 LRGLGYRL 197


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++      G++ + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        +Q L + G+L +  DA   +  G  + LT +E++++  L+      +
Sbjct: 122 IETAVAEENASSGSQELTI-GNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 181 TREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|44888876|gb|AAS48175.1| DNA-binding response regulator [Pseudomonas fluorescens]
          Length = 246

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +     LT++ 
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELK-RGEEVHMLTTGEFAVLKALVMNARQPLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVF 238


>gi|323138724|ref|ZP_08073790.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322396079|gb|EFX98614.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED + LA  I   +K   F V   D  E        Y +   +LD  L D  G 
Sbjct: 1   MRILLVEDHEELASQIAKQIKGAGFIVDRVDSIEKAELALSDYTYSVTLLDRRLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R  +  + V +L+ + +I+ ++ GL +GADDY++KPFN  EL+ARIRA +RR  
Sbjct: 61  SLVPKIRRRQPDSRVLMLTALDAIDQRIEGLDAGADDYLTKPFNLHELMARIRANLRRHE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +    LS + +   V V G  + L  +E  ++  L  R    + ++  +  +Y 
Sbjct: 121 GDPSPPVEIASLSFDFNTHVVTVAGQPVMLHRRELSLLAALMRRAGRVVKRQTLMAEIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +E +   + + + +LR  L     G + I +  G GYV+   AK   C
Sbjct: 181 IDEEIQPHALTILVSRLRTHLDEVEAGVD-IHSARGVGYVI---AKRHPC 226


>gi|297194231|ref|ZP_06911629.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152178|gb|EFH31577.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +  ++   L   +  V       + +     + FD +ILDLGL D+ G E 
Sbjct: 7   VLVVEDDQFVRSALIRHLTEASHTVRSVGTALEALREVAHFRFDVVILDLGLPDLDGAEA 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      PV I +      + VR L  GADDY++KPF+ E L AR+ A++RRSR  
Sbjct: 67  LKMLR-GITDVPVIIATARDDEAEIVRLLNDGADDYLTKPFSVEHLSARMAAVLRRSRAA 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++    +I  G LS++   +  E+ G R+ LT +E+ ++  L+ R    + ++  L  +
Sbjct: 126 GEAPPPRVIQVGGLSIDPLRRQAELDGDRLDLTRREFDLLAFLAGRPGVVVPRKELLAEV 185

Query: 179 YD---GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    G D+     IDV +  LR+KL   A    Y+ T+ G G  L
Sbjct: 186 WQQSYGDDQ----TIDVHLSWLRRKLGETAARPRYLHTLRGVGVKL 227


>gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC
           35469]
 gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Escherichia fergusonii ATCC 35469]
 gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+ L+ED++ +A ++  ML  E F V   + G   +E   F   D  ILD+GL DI GF
Sbjct: 4   VRVWLVEDEQGIADTLIYMLTQEGFLVEAFERGLPALEKAHFQVPDVAILDVGLPDISGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R L     + P+  L+  S   D++ GL+ GADDY++KPF+  E+ AR+R ++RR +
Sbjct: 64  ELCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  G   +N  A  +      + LT  E+ +++ L +      +++  ++ +
Sbjct: 124 KFSAPSPVIRCGQFELNEPAAQISWCDTPLQLTRYEFLLLKTLIMSPGRVWSRQQLMDKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +   + +D  I  LR KL       + I T  G GY L
Sbjct: 184 WADAQDTFDRTVDTHIKTLRAKLRAINPALSPINTHRGMGYSL 226


>gi|189467435|ref|ZP_03016220.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
           17393]
 gi|189435699|gb|EDV04684.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
           17393]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  +I + L  E+F V         ++    Y++D I+LD+ L    G 
Sbjct: 1   MKILIVEDEPDLRETIRISLLKEHFVVETAADYFSALDKVNDYDYDCILLDIMLPGGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR L+    S  V I+S   S++DKV GL+ GADDY++KPF+  EL AR+++++RR +
Sbjct: 61  DLLRELKRLHRSDSVLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVKSVIRRRQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
                 I  G+L +  D + VEV G  + L  KE+ ++    +  N  + K      ++ 
Sbjct: 121 AKGDVSITVGNLLLYPDKRQVEVGGVPLQLNRKEFDLLYYFIVNPNRVINKMSLAESVWG 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D  D+ + +  I   +  LR+KL  A      ++ V+G GY L E+
Sbjct: 181 DNIDQADSLDFIYSQVKNLRRKLKQADATVE-LKAVYGFGYKLSES 225


>gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 243

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL+ED+  LA+ ++L L + NF+V + T L +    L +   FD I++D  L D  G 
Sbjct: 14  KILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNL-ELKSFDLILIDRTLPDGDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR A   TP  +L+   S  D V GL+SGADDY++KPF+  EL AR++A++RR  
Sbjct: 73  MLCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGH 132

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H +  +    +++N D + V     ++ LT +E+ ++  ++       ++   L  +
Sbjct: 133 QTEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +          ++  I +LR KLS+       ++TVWG GY
Sbjct: 193 WGYSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGY 233


>gi|325479620|gb|EGC82712.1| subtilin biosynthesis regulatory protein SpaR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 112/217 (51%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL ++D+  +   IE +LK  N  V V     D I+  K  ++D I+LD+ +  I G   
Sbjct: 4   ILAVDDELDMLDLIENILKKNNHQVDVYQNPLD-IDYSKLSKYDLILLDVMMPGIDGISF 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  K+  P+  L+  +  ED V GL  G DDYI+KPF   EL+ARI A +RR +  
Sbjct: 63  CKEIR-GKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREKRE 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G++  +L +  V V   ++HLT  EYQ+ ELL+ RK    +++     ++   
Sbjct: 122 RHTSLNLGEIRFDLSSNEVFVVEEKVHLTKSEYQISELLAKRKGQVFSRDQIYELVFGFD 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +   I   I  +R K      G+N IETVWG GY
Sbjct: 182 GIGDASAISEHIKNIRAKFQKY--GENPIETVWGIGY 216


>gi|259047740|ref|ZP_05738141.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035931|gb|EEW37186.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 126/232 (54%), Gaps = 17/232 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTD 56
           M +L+IED +A+   +E+  ++E +       G++G +   F E    +  +ILD+ L  
Sbjct: 2   MHVLMIEDTEAVCEMMEMFFENEGWKASFYHDGKEGFD--AFMENQSKWGIVILDVNLPS 59

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G ++ R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   ++ARI+A++
Sbjct: 60  MDGMQICRQIRQVNQAVPIVMLTARDSESDQVIGLEIGADDYVAKPFSAVTIMARIKALL 119

Query: 117 RRSRGHAQSL--------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
           RR++  + S         + T  + +N       + G +I +LT KE+ ++ +++  +  
Sbjct: 120 RRTQRSSASGSGALSTFDVETDHVKINTKTHEAFIDGKQIENLTPKEFDLLMVMAKHQRQ 179

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             T+E  L  +++     + + +D  I KLR+K+   A G + I TVWG GY
Sbjct: 180 VFTREHLLTKIWEDPFYGDERTVDAHIKKLRQKIE--AVGPHVIHTVWGVGY 229


>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  ++  L    + V     G DG+ L   + ++ +ILD+ L    G+
Sbjct: 1   MRILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +  V +L+    + DK++GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLEQLR-RNGTQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSE 119

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  + +  DL ++           RI LT KE+ ++++L  +    LT+   ++ ++
Sbjct: 120 HIPQPEVFSVQDLELDPRRHRAYRGSRRIDLTTKEFALLQVLMRQTGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +++V I +LR K+ + +  K  I T+ G GYVL
Sbjct: 180 DMNFDCDTNVVEVSISRLRAKVDDQSEVK-LIHTIRGVGYVL 220


>gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|332284996|ref|YP_004416907.1| two component system response regulator [Pusillimonas sp. T7-7]
 gi|330428949|gb|AEC20283.1| two component system response regulator [Pusillimonas sp. T7-7]
          Length = 244

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 16/211 (7%)

Query: 23  ENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPGFEVLRALRVAKISTPVCILS 79
           + FNV+V    ED  E+ K ++   FD ++LDL L    G  + R LR    +TP+ IL+
Sbjct: 32  QGFNVFV---AEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIILT 88

Query: 80  GMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGD 131
             +   D++ GL+ GADDY+SKPFN  EL+AR+ AI+RR        +       I  G 
Sbjct: 89  AKAEEIDRIVGLEMGADDYLSKPFNPRELLARVNAILRRRGTEEHPGAPSQENESIEFGP 148

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKII 190
             +NL  +T+     ++ +T  E+ ++++ +      L+++  +  L  GR+ E   + +
Sbjct: 149 YVLNLSTRTLTRNNEQVPITTGEFSVLKVFARHPKIPLSRDKLM-ELARGREYEAFDRSL 207

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I +LRK +        +I+TVWG GYV 
Sbjct: 208 DVQISRLRKLVEPNPSKPVFIQTVWGLGYVF 238


>gi|326317438|ref|YP_004235110.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374274|gb|ADX46543.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L  ++    +   + +     G  G+ +   +++DAI+LDL L  + G  
Sbjct: 3   RLLIIEDNPELVANLYGFFEPLGYVLDDARDGATGLRMATQHDYDAILLDLMLPRLDGMA 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R LR   +   PV +L+    ++D+V+GL +GADDY+ KPF+  EL ARI+A+VRR++
Sbjct: 63  LCRKLREEYQNPVPVLMLTARDPVDDRVQGLAAGADDYLVKPFSLRELDARIQALVRRAQ 122

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q ++   DL V+        QG  IHLT   +Q++  L +R    + +   + +L 
Sbjct: 123 GRQVQGMLAWEDLQVDTRTPRAWRQGRTIHLTPTTHQLMMCL-VRAAPVVVRRQEMEYLL 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGYVLR 222
            G + PE   +   I  LR+++      KN+    IETV G G+ L+
Sbjct: 182 WGEEPPEGGALRTHIHDLRQQVD-----KNFTHALIETVHGIGWRLK 223


>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
 gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 12/224 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++  SI   L++E ++V +   G   +  C+  + D ++LD+ +    G E
Sbjct: 5   RVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMPGFDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R ++  +   PV +L+  +   D + GL  GADDY+SKPF+   LVAR++A++RR+  
Sbjct: 65  VCRRIQAVR-PVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADR 123

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             HA      L+  GD+ ++L  + V      +HLT  E+ +I  L+ R    + +E  L
Sbjct: 124 AEHAARPVADLLEFGDVVIDLTERRVRRDAQEVHLTRTEFDLIAYLAERPRAAIPRESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   +    + +D  +  LR+KL     G + I TV G GY
Sbjct: 184 EEIWGWGEGAGSRTVDSHVKALRRKL-----GPSVIRTVHGVGY 222


>gi|291287552|ref|YP_003504368.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884712|gb|ADD68412.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 21/229 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---------GIELCKFYEFDAIILD 51
           MRILL+EDD  L         SEN   ++TD G D          ++L K   +D IILD
Sbjct: 1   MRILLVEDDFDL---------SENIIDFLTDCGYDCDFAYNGIVAVDLIKQNPYDLIILD 51

Query: 52  LGLTDIPGFEVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           +GL  I GFEV R +R   K++TPV +L+ + S++DK+ G Q+G DDY+ KPF+  EL A
Sbjct: 52  IGLPGINGFEVCRIVRQDLKLNTPVIMLTALISLDDKLSGFQAGTDDYLPKPFDMPELQA 111

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RI A+ +R+R     ++  G L  +++   +      + L      ++ +L +  +  L 
Sbjct: 112 RIEALAKRTRPVQNHVLTVGSLVYDVEQGILTRNNIELQLPPVCMHILRIL-MEASPNLV 170

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +  L +   G   PE   +   +  LR  + +    KN + TV G+GY
Sbjct: 171 SKSELEYAIWGHTPPETDALKAHLYTLR-NIIDKPFSKNMLVTVRGQGY 218


>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
 gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +  ++ + LK++ + VY    G++G+E+   +E    I+D+ +  + G  +
Sbjct: 5   ILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K   P+  LS  S   DK+ GL  G DDY++KPF   ELVAR+   +RR    
Sbjct: 65  TMKLR-QKYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQI 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +  +AQ  +V G L ++   K V      + LT KE+Q++ELL        + 
Sbjct: 124 IKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYSA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E     ++   +    + I V I KLR+K+        Y++ VWG GY
Sbjct: 184 EEIYQAVWK-EEAINTETIMVHIRKLREKIEINPKKPEYLKVVWGIGY 230


>gi|150025465|ref|YP_001296291.1| two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772006|emb|CAL43482.1| Two-component system response regulatory protein [Flavobacterium
           psychrophilum JIP02/86]
          Length = 227

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
            +IL  EDD+ LA   +  L+  N+N+   + G+  ++  K   FD  ILD+ +  I GF
Sbjct: 4   FKILYTEDDETLAFLTKDNLEQNNYNITHCNDGQIALDTFKNNPFDICILDIMMPKIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+  A+R    + P+  LS  +  ED+++GL+ GADDY+ KPF+ EEL+ +I   ++RS 
Sbjct: 64  ELATAIRKLNTNIPILFLSAKTLKEDRIKGLKLGADDYLIKPFSIEELLLKIEIFLKRSL 123

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    +++   G    +     +     +I LT +E Q+++     KN  L +E  L  
Sbjct: 124 KNNFEEKNIYTLGKYQFDSKNYVIFTDDQKIKLTERESQLLKFFLNNKNVVLKREEILKS 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           L+   D    + +DVFI +LRK L  A   K +IE + G G+
Sbjct: 184 LWGDDDYFMGRSLDVFISRLRKIL--AHEEKIFIENLHGIGF 223


>gi|145225290|ref|YP_001135968.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315445587|ref|YP_004078466.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145217776|gb|ABP47180.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315263890|gb|ADU00632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLR-ADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           R   + ++++V + +LR K+         + TV G GY
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGY 223


>gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901]
 gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family
           [Teredinibacter turnerae T7901]
          Length = 231

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++DD+ L   I   L +E F V     G+  +  L    E   I+LD+ +  + G +
Sbjct: 7   ILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLASPPECQLIVLDIMMPGLSGLD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR +  STPV +L+G     D++ GL+ GADDY++KP N  ELVAR+RAI+RR++ 
Sbjct: 67  VLQRLRPSN-STPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQN 125

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q L+    + ++      +  G  + LTG E+  +++L      T TK      +
Sbjct: 126 PTSGDQHLLDVAGIQLSPADMQAKALGTPLQLTGAEFNTLKVLMQHPGQTQTKAFLTEQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + IDV + ++R+KL+N AG  + I +V G GY L
Sbjct: 186 LHRPLTAYDRSIDVHVSRIRQKLAN-AGIHDIIRSVRGVGYQL 227


>gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 259

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ +  ++   L+   + +     G+ G+E+     FD I+LD+ L  + G  +
Sbjct: 5   LLLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRGFDCIVLDVMLPGMDGISL 64

Query: 63  LRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R LR   ++STPV +L+   ++ D+V GL++GADDY+ KPF  +EL ARIRA++R  RG
Sbjct: 65  CRRLRQEYRVSTPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLR--RG 122

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H Q       L    DL  N +    E +G R+ L+   ++++  L LR    L +   L
Sbjct: 123 HLQGSNGADGLWTCADLVFNDEEHWAERRGQRLRLSPTGFRILREL-LRVAPGLVRRQDL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  G + PE   +   I +LR++L     G+  + TV   GY L  +A +E
Sbjct: 182 ERLLWGSEPPEGSALRTHIHELRRELDKPF-GRALLHTVPHVGYRLSPDASEE 233


>gi|198241940|ref|YP_002218459.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197936456|gb|ACH73789.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326626267|gb|EGE32612.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++ L+ED+K +A ++   L+ E F V +   G   +E  +    DA+ILD+GL DI GFE
Sbjct: 5   QVWLVEDEKGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     + P+  L+  S   D++ GL+ GADDY++KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRRVKK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A    ++ TG   +N  A  +   G  + LT  E+ +++ L L      +++  ++ ++
Sbjct: 125 FAAPSPVVRTGHFELNEPAAQIAWFGTPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E   + +D  I  LR KL       + I T  G GY LR
Sbjct: 185 SDAQETFDRTVDTHIKTLRAKLRAINPDLSPINTHRGMGYSLR 227


>gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I   L+ E + V   + GE+ +E   +  F  IILD+ L  + GF V
Sbjct: 8   ILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVMLPGMDGFAV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      PV IL+  S    +V GLQSGADDY++KPF+  E + R+  ++RRS  +
Sbjct: 68  CERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRSSWY 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +      GD  V L +         I LT  E +M+ L   R+   +++   L ++
Sbjct: 128 RPEPVEEAYRFGDNEVFLLSYHARTAQGEIDLTELEVKMLSLFFQREGEAISRREILENV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E + +D FI +LRK          Y  TV G GY
Sbjct: 188 WGYTSDTETRTLDNFIVRLRKYFEPNPARPIYFHTVRGLGY 228


>gi|16263960|ref|NP_436752.1| putative response regulator protein [Sinorhizobium meliloti 1021]
 gi|15140084|emb|CAC48612.1| putative response regulator protein [Sinorhizobium meliloti 1021]
          Length = 245

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           IL+++DD+ +   +   LK     V       DG ++  F E    D IILDL +    G
Sbjct: 7   ILIVDDDREIRELVSAYLKKNGLRVTAV---ADGRQMRTFLEANTVDLIILDLMMPGDDG 63

Query: 60  FEVLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
             + R LRV +  +TP+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI+A++RR
Sbjct: 64  LVLSRELRVGRHKATPIVMLTARSDEMDRIIGLEMGADDYIAKPFSARELLARIKAVLRR 123

Query: 119 SR--------GHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +R          A  L+  G   ++  A+  ++  G  I L+G EY+++ +        L
Sbjct: 124 ARMLPANLQVSEAGQLLRFGQWKLDTTARHLIDADGTAIALSGAEYRLLRVFVDHPQRVL 183

Query: 170 TKEMFLNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  LN L  GR E E+  + ID+ + ++R++L + A    YI TV   GYV 
Sbjct: 184 NRDQLLN-LTQGR-EAELFDRSIDLLVSRVRQRLGDDAREPTYIRTVRSEGYVF 235


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 115/224 (51%), Gaps = 10/224 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ++   +   L+ E+F V         + L + +    I+LD+ +    GFE+
Sbjct: 7   ILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPGQNGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +  S P+  LS      DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 67  CRTIRSSS-SVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSAQ 125

Query: 123 AQ---SLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +   SL V     G L +NL  + V V G  I LT +E+++++L   R     + +  +
Sbjct: 126 QEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHLI 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + L++G  +     + V + +LR K+ +      Y+  VWG GY
Sbjct: 186 DKLWEGVGDKHT--VRVHLSRLRDKIESDPAQPRYLINVWGVGY 227


>gi|269118927|ref|YP_003307104.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268612805|gb|ACZ07173.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 232

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I+  L+ ENFNV         +E+ +  + + +ILD+ L  + G E+
Sbjct: 6   ILVVEDDLEIKTLIQFFLEKENFNVITAQNSGKALEMLQNNKPELVILDIMLPGLNGLEI 65

Query: 63  LRALR--VAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-R 118
            + ++    K  TP + +L+  +  ED + G Q+G DDY+ KPF+  EL+ RI+ ++  +
Sbjct: 66  AKLIKKESHKYGTPFIFMLTAKTETEDVIDGFQAGCDDYLRKPFDPRELILRIKKLLSLK 125

Query: 119 SRGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             G A      L+    + +NLD  TV   G+ + L+ KE+++I  L   K   L++E  
Sbjct: 126 KEGFAPEKESGLLRYDQIEINLDKHTVTESGNEVILSNKEFRLIAFLIQNKGLALSRETI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ +++       + IDV++ K+R+KL + +     I+T+ G GY L+E
Sbjct: 186 LSRVWNENYHLGDRTIDVYVGKIREKLPSISEN---IKTIKGVGYRLKE 231


>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 263

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 17/231 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +  S+ + L+   ++V V   G  G+EL +  + D ++LD+ L  + G  +
Sbjct: 38  ILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPALDGIGL 97

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R    + P+ ++S      D V GL++GADDY+ KP +   LVARIR+++RR+   
Sbjct: 98  CRRIRETS-TAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRASAA 156

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         L+V GDL+++  A  V   G  I L   E +++   S      L +
Sbjct: 157 APPPAGPGAPGPAGLLVFGDLTIDPAALEVRRDGQEIALAPSELRLLLEFSAHPGIVLDR 216

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L +++D   + + +++D+ + +LR+K+     G + IETV G GY LR
Sbjct: 217 QTLLRNVWDYGWDGDTRVVDLCVQRLRRKI-----GADRIETVRGFGYKLR 262


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED +     ++  L +  F+V   + G+ G+ L   ++ D I+LDL +    G E
Sbjct: 5   KILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGTDGLE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L+   A    PV +L+      DK+ GL+ GADDY+ KPF+  ELV RI+AI+RR 
Sbjct: 65  VCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRRY 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A  L     L ++ +A  + + G    LT  E++++ +L        T++  L+
Sbjct: 125 GAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++D   E   + +D  + +LR+KL   A    +IET+ G GY
Sbjct: 185 TVWDTHFEGYSRTVDTHVRRLRQKLGPYA---PWIETIRGVGY 224


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 119/233 (51%), Gaps = 17/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L  + + V   + G++  + C+   F+ I+LD+ L    G  
Sbjct: 10  KILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR     TP+ +L+  S   D++ GL+ GADDYI KPFN  EL+ARI A++RR+  
Sbjct: 70  ICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNTV 129

Query: 121 -------GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK- 171
                     + L+V  G   +NL  +T+      + +T  E+ ++++ +      L++ 
Sbjct: 130 EFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSRY 189

Query: 172 ---EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E+     Y+  D    + +DV I ++RK +        +I+TVWG GYV 
Sbjct: 190 KLMELARGKEYENFD----RSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVF 238


>gi|228936548|ref|ZP_04099344.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228948983|ref|ZP_04111256.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810739|gb|EEM57087.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228823136|gb|EEM68972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 206

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 10/209 (4%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76
           + L+ E + V     G + +E  ++ E  D +ILD+ L D  G+E+LR  R      PV 
Sbjct: 1   MQLEMEGYEVLTAADGREALE--RWNEGPDVLILDVMLPDTDGYELLRLFREKDRDIPVL 58

Query: 77  ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH----AQSLIVTGDL 132
           +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +      +  +I  G++
Sbjct: 59  MLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVKKKEVTVSHEVIEAGEI 118

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           ++    + V V G  I LT +E+ + +L          ++  L  ++        + +D+
Sbjct: 119 TICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEKVWGFEYIGNTRAVDI 178

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +LRKKL N+     YI+T++G GY L
Sbjct: 179 MVQRLRKKLGNSG---EYIKTIYGVGYKL 204


>gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +   I+L L+++ + ++     +  +E+    + +  I+DL +    G+
Sbjct: 2   INILIVDDEKEIVDLIDLYLRNKGYCIFKAYDSDKALEILNLEKINLAIMDLMMPGTDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++++ +R    + P+ I+S      DKV GL  GADDYI+KPF+  EL+AR+ A +RR  
Sbjct: 62  DLIKKIRSTS-NIPIIIISAKCENHDKVIGLDIGADDYITKPFDPLELIARVNAQLRRCY 120

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +++I + DL ++ D   V   G  + LT KE++++EL    KN  LTK+   
Sbjct: 121 LLNLEDNNENIIKSRDLILDKDKIIVTKGGKEVFLTLKEFKLLELFMENKNKVLTKQRIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      +  +I V I  LR K+ +      YI+T+ G GY   E
Sbjct: 181 ENIWKEEYLYDDNVIMVHISNLRDKIEDNNKENKYIKTIRGIGYRFEE 228


>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
 gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + G  G+E     E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKDILSFEGFTVSEANDGYAGLEAIN-DEIDLILLDVMMPRLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKKLR-EHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQTT 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +   D+ V    +     G  I LT  E+ ++  L       +TKE     
Sbjct: 122 NTPKAASDRVQYQDIEVFPGKQEAYCNGEIIDLTTTEFALLSHLIQNPGQVITKEALSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   R     + ID+ I  LRKK+   + GK+ I+T+ GRGY+L E
Sbjct: 182 VLGKRLAAFDRAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLLVE 227


>gi|300788744|ref|YP_003769035.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|15011029|gb|AAK77357.1|AF331073_1 response regulator AmrC [Amycolatopsis mediterranei U32]
 gi|7340666|emb|CAB83036.1| putative response regulator [Amycolatopsis mediterranei]
 gi|299798258|gb|ADJ48633.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ LA ++ L L++   +V     GE  +      EF  ++LD+ L  I GFE
Sbjct: 3   RLLLVEDDEPLAEALSLALRALGHDVVHAPTGEHALTALGDAEF--VLLDVMLPGIDGFE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+   P+ +L+      D V GL+ GADDY+ KP     L ARI+AI RR++ 
Sbjct: 61  VCRRIR-ARSRLPIVLLTARGDPIDVVAGLECGADDYVVKPAEPRVLDARIKAIGRRAQP 119

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+L+++  A +V   G  + LT  E +++   +   N  L++++ L  ++
Sbjct: 120 AVPEAGVLRVGELAIDAAAMSVTRAGEELALTATEIRLLVEFAEHPNQVLSRQVLLKRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     + +I+D  + +LR K+ +       + TV G GY L
Sbjct: 180 DYGYVGDSRIVDAAVARLRAKVEDDPANPVLLRTVRGLGYRL 221


>gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 124/227 (54%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  +E+ L S+ F V+  +  EDG++L +  +    ILD+ +  + G E+
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIMMPGMDGLEM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + +R    + P+ +LS  S+  DK+ GL +GADDY++KPFN  EL AR+++ +RR ++ 
Sbjct: 66  CKKIRETH-NFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQL 124

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +  S ++  D         +S+N D   V ++G+ + LT  E+ ++ LL+       + +
Sbjct: 125 NPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFSTD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +++ +       + V I +LR K++        I TVWG GY
Sbjct: 185 EIFEKVWNEKVYEANNTVMVHIRRLRGKMNEDERENKIITTVWGVGY 231


>gi|330991829|ref|ZP_08315778.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
           SXCC-1]
 gi|329760850|gb|EGG77345.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
           SXCC-1]
          Length = 239

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ +   +   L+     V     G +         +  +ILDL L    G ++
Sbjct: 7   ILIIDDDREIRDLLARFLERNELRVTTARDGHEARRRWSEGHYQLVILDLMLPGESGLDI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + P+ +L+ M    D++ GL+ GADDY+ KPFN  EL+ARIRA++RR+   
Sbjct: 67  SRWLRT-QANVPIVMLTAMGDDTDRIIGLELGADDYVPKPFNPRELLARIRAVLRRASDT 125

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +L   G +      + +   G  + LTG EY ++  L  R N  +T++M 
Sbjct: 126 PDPRSVPVLHTLRFAGWMLDTGRRRLLNPDGVEVPLTGGEYDLLLALLERANRVMTRDML 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + L   +  P  + IDV I +LR+KL +       I+TV G GYVL
Sbjct: 186 FDLLRGRQAGPFDRAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232


>gi|319941921|ref|ZP_08016242.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804574|gb|EFW01444.1| winged helix family Two component transcriptional regulator
           [Sutterella wadsworthensis 3_1_45B]
          Length = 240

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 108/207 (52%), Gaps = 10/207 (4%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
            FNV V++ GE    L     FD +ILDL +    G  +L+ LR  K  TPV +L+    
Sbjct: 29  GFNVLVSENGEAMKRLWVREHFDVLILDLMMPGEDGLAILKRLRAEKDMTPVIMLTARGE 88

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLSVN 135
             D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +      ++  GD  ++
Sbjct: 89  DVDRILGLELGADDYLGKPFNPRELLARIHAVLRRRPRQDAPGAPSMENEVVKFGDFELD 148

Query: 136 LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD-EPEVKIIDVFI 194
           L  + ++  G  + LT  E+ +++  +      L+++  +  +  GR+ E   + +DV +
Sbjct: 149 LGTRVLKKNGEIVPLTTGEFAVLKAFARHPRQPLSRDKLM-EMARGREYEAFDRSLDVQV 207

Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +LRK L        Y++TVWG GYV 
Sbjct: 208 SRLRKLLEPDPSKPRYLQTVWGLGYVF 234


>gi|301056992|gb|ADK54817.1| two component response regulator [uncultured soil bacterium]
          Length = 251

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 4/213 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD+ +A ++ + L+     V VT  G +G+E   F+++D I+LD  L  + G +V   L
Sbjct: 39  EDDEEMAQTVAVGLRRAQMAVDVTFDGPNGLERALFHDYDVIVLDRDLPGMHGDKVCAEL 98

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
             A   + V +L+  ++  D V GL  GADDY+ KPF+   L+ARI A+ RR+       
Sbjct: 99  IAAGCRSRVLMLTAAATATDLVDGLSLGADDYLPKPFDFPVLIARIGALARRAHPAVPPA 158

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  GDL V+   ++       + L  KE+ ++ELL   K   ++ E  L  ++D   +P 
Sbjct: 159 LRHGDLVVDTARRSASRGDRLLELAPKEFGVLELLLASKGRAVSAEELLERVWDEAADPF 218

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + + I +LR KL    G    IETV   GY
Sbjct: 219 TSAVKITISRLRAKL----GDPPVIETVAKSGY 247


>gi|257438363|ref|ZP_05614118.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257199194|gb|EEU97478.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+IEDD  L    + +L    + V     G + + L +   FD I+LDL L  IPG  
Sbjct: 8   HLLIIEDDVLLNDMTKRLLTQHGYCVTSAYSGSEALLLIEKGTFDLILLDLMLPGIPGET 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  ++ + +  P+  +S  + I+ KV  +++GADDYI+KPF+ +EL+ R  A++RR   
Sbjct: 68  VLEKMK-STMDIPIIGVSAKTDIDSKVNLIRNGADDYITKPFDNQELLVRTEAVLRRFQK 126

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +  +   ++   DLS++ +A   +++   I LT  EY +++LL    +   TK      
Sbjct: 127 STTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFES 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +   I+V I  LRKK +     + YI+TVWG G+ ++
Sbjct: 187 VWNENFVGDDNAINVHIGNLRKKFAKVNPEEKYIQTVWGLGFKMQ 231


>gi|297191574|ref|ZP_06908972.1| two-component system response regulator CutR [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197719311|gb|EDY63219.1| two-component system response regulator CutR [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 217

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL AR+RA+ RR+ 
Sbjct: 61  DVCRRIVELGMPTRVLMLTASGDVSDRVEGLELGADDYLPKPFAFTELTARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGREIQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S  F     + G   +E       + ++LD+ L    G E+
Sbjct: 2   IFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMEL 61

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           LR L+ +K +   PV +++   +  DKV+GL +GADDY++KPF   EL++RI+A++RRS 
Sbjct: 62  LRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRSA 121

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G   S      G++ ++     V V G  ++LT KEY++++ L    N  LT++  L  
Sbjct: 122 KGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++    + E + +DV +  LR+KL +A      IETV G GY
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGDAG---EQIETVRGVGY 220


>gi|21232537|ref|NP_638454.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21243976|ref|NP_643558.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|66767377|ref|YP_242139.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78048921|ref|YP_365096.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|166713155|ref|ZP_02244362.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188990477|ref|YP_001902487.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. campestris str.
           B100]
 gi|289661862|ref|ZP_06483443.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|289666946|ref|ZP_06488021.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|294624278|ref|ZP_06702985.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294665372|ref|ZP_06730662.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325916232|ref|ZP_08178513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|21109590|gb|AAM38094.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21114330|gb|AAM42378.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572709|gb|AAY48119.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78037351|emb|CAJ25096.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|167732237|emb|CAP50429.1| two-component system response regulator receiver / transcriptional
           regulator [Xanthomonas campestris pv. campestris]
 gi|292601421|gb|EFF45451.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292604875|gb|EFF48236.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325537526|gb|EGD09241.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 225

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A ++   L+     V     G  G+ L   +EFDAI+LDL L  + G 
Sbjct: 1   MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  A+  TPV +L+   S+++K+ G  SGADDY+ KPF  +E+  R+ A+ RR 
Sbjct: 61  EVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    ++ TGDL  NLD   V  +G  + L     ++++ L       +T++     ++
Sbjct: 121 KGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G + P+   + V I  LR  + +       I+T  G GY
Sbjct: 181 -GEELPDSDSLRVHIHGLR-AVVDKPFDVPMIQTRHGIGY 218


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 21/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G++  +    D  +LD+ L  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVMLPGMDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + PV +LS  +   D V GL++GADDY++KPF+   L+ARIRA++RR  GH
Sbjct: 66  CRRIR-DESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRRF-GH 123

Query: 123 A--------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A                L+  GDL V+ +   V   G  + LT  E +++   S    T 
Sbjct: 124 AGGPGAGEHGEETPDGGLLAFGDLEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+     G++ IETV G GY L+
Sbjct: 184 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQDRIETVRGFGYKLK 232


>gi|312128910|ref|YP_003996250.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311905456|gb|ADQ15897.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 223

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  ++  I+  L+   + V      ++G+   + Y++DAI+LDL L D  G 
Sbjct: 1   MKILIVEDETEISKLIQESLEEAQYLVESASTFKEGLLKIEDYQYDAILLDLMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R ++ +T V ILS   ++EDKV+GL  GADDY++KPF+  EL +R+++ +RR  
Sbjct: 61  DLLSEIRSSQPNTSVIILSAKDAVEDKVKGLDLGADDYLAKPFHLVELHSRLKSALRRRN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR-----KNTTLTKEMFL 175
              ++ I   +L +  + +   V G+ + L  KEY ++    +R     + TTL + ++ 
Sbjct: 121 QQGENKIEYKNLCLYPETRDFLVAGNHVALNRKEYDVLYYFMIRPGRLIQRTTLAESVWG 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +H+ D  D   +  I   I  LRKKL   +G    ++ V+G GY L
Sbjct: 181 DHI-DQAD--SLDFIYSQIKNLRKKLKE-SGADADLQAVYGVGYKL 222


>gi|255263392|ref|ZP_05342734.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62]
 gi|255105727|gb|EET48401.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62]
          Length = 221

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR LLIED++ALA ++   L  +   V +  DL E   +     ++D I+LD+ L D  G
Sbjct: 1   MRFLLIEDNEALAGAVVDRLALDGHVVDHAGDL-ETASDFTHTTDYDLILLDIMLPDGDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              L   R AK  TP+ +L+  S + D+V  L  GADDY+ KP +  EL AR RA++RR 
Sbjct: 60  RSFLAQQREAKSRTPIIVLTARSEVSDRVGMLDLGADDYMVKPIDFSELEARCRAVLRRQ 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+++I  G+L  +  A T+++ G    L  +E ++ E+     N   +K   ++ L+
Sbjct: 120 GGAARNIISFGELEFDSLAGTLKIGGDETKLRTRELRLFEIFVNAPNQVFSKPKLVDRLF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +E     I+V++ +LR+ L  +      I TV G GY L
Sbjct: 180 SYDEEASENAIEVYVGRLRRHLDTS---DVSITTVRGLGYKL 218


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    + ++   D+++N+    V++    + LT +E+ ++ELL+  +    + E
Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++          + V I KLR+K+        YI+TVWG GY
Sbjct: 184 KIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGY 230


>gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630]
 gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile]
 gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291]
          Length = 219

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 12/222 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE +LK +   V V    E  + +  F  F+ IILD+ +  + GFE
Sbjct: 3   KILVVDDELDMLKLIENVLKRDGHEVKVISDVEKAMNM-DFNYFNLIILDVMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+  P+  L+  +   D + GL  GADDYI+KPF   EL ARI A +RR   
Sbjct: 62  VCKTIR-NKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRESR 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++L+   ++  N   K V + G +I+ T  EY + E L+  K    +KE     +Y  
Sbjct: 121 EKKNLLTISNVQFNFLGKEVSIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYGF 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY----IETVWGRGY 219
             E ++  I   I  +R KL      K Y    IETVWG GY
Sbjct: 181 DGESDISTITEHIKNIRSKL------KQYDIYTIETVWGIGY 216


>gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
 gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
          Length = 226

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/227 (29%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  +   +   L  E ++V     G+  I++     +D +++D+ +    G 
Sbjct: 1   MKILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMATENAYDVMVMDIMMPVKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ +R     + + +L+ M+ ++D+V GL +GADDY++KPF+ +EL+AR+R++ RR  
Sbjct: 61  EAVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVD 120

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  S I+T G +++N+  + + V  + I L GKE +M+E   L     L+ +   NH++
Sbjct: 121 TNFTSNILTVGTVTLNVGEQEL-VSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVW 179

Query: 180 -DGRDEPEVK--IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +D+PE+    + +++  LR+KL  + G    IE     GY L+E
Sbjct: 180 ANDKDDPEIDNGYVFIYVSYLRQKLK-SIGANVVIEGEEMGGYELKE 225


>gi|162147059|ref|YP_001601520.1| transcriptional regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161785636|emb|CAP55207.1| Transcriptional regulatory protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 253

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+++ L++E FNV     GE  +        D  +LD+ +  + G E+
Sbjct: 25  IALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALHGLMTRPVDLAVLDIKMPRMDGMEL 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L+ LR  +   PV  LS      D++ GL+ GADDYI+KPF++  L+ RIRA++RR   +
Sbjct: 85  LQRLRT-RSHLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRRNEAT 143

Query: 120 RGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RG      A   +V GDLS++        +G  I LT  E+ +++ L+ R     +++  
Sbjct: 144 RGEPGGQAAAGSLVRGDLSLDETRHQCLWRGKDIQLTVTEFLLVKALAARPGLVKSRDQL 203

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  Y      + + ID  I ++RKK        N IET++G GY  +E
Sbjct: 204 IDAAYGENIYVDDRTIDSHIKRVRKKFRQVDDDFNQIETLYGIGYRYKE 252


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I   L+ E +       G + +EL K    D I+LD+ +  + G  V
Sbjct: 6   ILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKLDGLSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R       + +L+  S+  DK+ G + GADDYI+KPF+ + LVA+I A+++R+   
Sbjct: 66  CRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRADAG 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ    +   G L++N  + TV + G  I LT KE++++  L   K   LT+EM +N ++
Sbjct: 126 AQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMNLVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL +       I TV G GY L
Sbjct: 186 GYEYYGDLRNVDSHIKRLRQKLKSEG---RLITTVRGSGYKL 224


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 13/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 V      DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    Y+G D    + ID  I  LR+K+ +      YI+TV+G GY
Sbjct: 183 VMGFDYEGYD----RTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGY 224


>gi|255654120|ref|ZP_05399529.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296449841|ref|ZP_06891608.1| response regulator [Clostridium difficile NAP08]
 gi|296877905|ref|ZP_06901925.1| response regulator [Clostridium difficile NAP07]
 gi|296261328|gb|EFH08156.1| response regulator [Clostridium difficile NAP08]
 gi|296431102|gb|EFH16929.1| response regulator [Clostridium difficile NAP07]
          Length = 244

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++ L   +++ L  E +N +     G   +E  +  ++D IILD+ L D  GF
Sbjct: 10  RILIVDDEEGLLTLLKITLNKEQYNNITCVSTGAKALECIENNQYDLIILDVMLPDYSGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++    R   I+ P+  L+  +S  DK+ GL  G DDYI+KPFN  ELVARI+AI RR +
Sbjct: 70  DLCTNFRKKTIA-PIIFLTARASDYDKLSGLAIGGDDYITKPFNTMELVARIKAIFRRQQ 128

Query: 121 -------GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   H+++++V   G + +++    + V G  +  T KE +++E      N   T 
Sbjct: 129 LERSVLCNHSENILVYNYGYIVLDMAHALLTVSGKNVECTAKELELLEFFCQNPNRVFTT 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               + ++  +   + K + + I KLRKK+ +       I  + G GY
Sbjct: 189 SHLYDKIWGLQGYGDEKTVTIHISKLRKKILDDNKPYKVITNLRGIGY 236


>gi|317501115|ref|ZP_07959321.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331090143|ref|ZP_08339031.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897502|gb|EFV19567.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330402089|gb|EGG81661.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 221

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  + + +E  L +E + V     G + + L    + D ++LDL L  + G EV
Sbjct: 4   ILVIDDDLHIGNVLEETLTNEGYGVIRAYSGTEAVLLLSQVKPDLVLLDLMLPGLSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++      PV I+S    +++KV  L  GA DY++KPF   EL+ARI   +R     
Sbjct: 64  LPHIK----GIPVIIMSAKVDVDNKVALLLGGAVDYMTKPFYTRELLARIAVHLRTFDSF 119

Query: 123 AQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+S I+T  ++ +N+D    +++   I LT  EY +++LL   +   ++K   L+H+ + 
Sbjct: 120 AKSEILTFEEIKLNIDTHIAQIKDVEIKLTRTEYAILKLLMQNQTQVVSKSHLLDHISED 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     +   I  LRKKL  A  GK YIE VWG G+ ++E
Sbjct: 180 TPDCTESSLKTHISNLRKKL-RAVNGKEYIEAVWGIGFKMKE 220


>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
 gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
          Length = 233

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +A  IE+ LK++ + V    LG++ ++  +   FD  +LD+ L DI GF+
Sbjct: 4   KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ +R      PV +L+      DK+ GL  GADDYI+KPFN  E+VARI+  +RR + 
Sbjct: 64  IVQKIRENHFF-PVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 122 HAQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +   +  + +          L +N    T  + G  I LT  E+ ++  L+ RK   +  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E     ++  +       +   I +LR+KL        +I+TVWG GY
Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGY 230


>gi|227545063|ref|ZP_03975112.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909268|ref|ZP_07126729.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745287|gb|ABB02544.1| response regulator [Lactobacillus reuteri]
 gi|227184961|gb|EEI65032.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893133|gb|EFK86492.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 239

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 26/246 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KF----YEFDAIILDLGLT 55
           M IL+IED+ ++   + +  K E ++    +   DG+E   KF    +++D I+LDL L 
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWHY---EFAYDGVEAEEKFNADPHKWDIILLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+
Sbjct: 58  KKDGMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKAL 117

Query: 116 VRRSRGHAQSL-------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELL 161
            RR+  H   L             I T +  +N   + V + G  +  LT KE+ +++ L
Sbjct: 118 YRRT--HLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTL 175

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +     T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY  
Sbjct: 176 ASKPRQVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKF 233

Query: 222 RENAKD 227
            +   D
Sbjct: 234 DDEGND 239


>gi|330941199|gb|EGH44073.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + FNV + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N  E+VAR+ A++RRS+ 
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLCALRYGADDYVVKPYNPREVVARVHAVLRRSQQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G+ +  +   +L V LDA T  ++G       + LT  E++++  L    +   T+E  
Sbjct: 124 NGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G  N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKLE-IHGVDNVLVTVRSVGYRFR 229


>gi|317053290|ref|YP_004119057.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316953029|gb|ADU72501.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 233

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 13/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  LA  I   L    F+V  +    D     K   FD ++LDL L D  G  +
Sbjct: 4   VLLIEDDIRLAQMIVPYLAQYEFDVLHSASSTDAQSRMKMQNFDVVLLDLMLGDADGLAL 63

Query: 63  LRALRVAKISTPVCIL-SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            R +R    + P  I+ +G     D++ GL+ GADDY+ KPF   EL+AR+RA++RR R 
Sbjct: 64  CRQIRAESNNDPAIIMVTGRGDPADRIIGLEVGADDYLPKPFEPRELLARMRAVLRRLRP 123

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++    S+I +G+L ++  A+TV ++     LT  ++ ++  L+ +    L +E     
Sbjct: 124 GSRRDDVSVIQSGELEIDTAARTVTLRQQPCMLTSLQFDVLVSLARQAGRVLNREQIWQT 183

Query: 178 L----YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    YD  D    + IDV I ++R+ + +       I TV G GYV 
Sbjct: 184 VRGESYDNFD----RAIDVHIGRIRQLIEDDPRAPKRIITVRGVGYVF 227


>gi|254460890|ref|ZP_05074306.1| DNA-binding response regulator ChvI [Rhodobacterales bacterium
           HTCC2083]
 gi|206677479|gb|EDZ41966.1| DNA-binding response regulator ChvI [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 258

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L++DD+ +  S+ + L++E F V   + G+  ++       D  +LD+ +  + G +
Sbjct: 28  KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQSALDAFNRKLPDMAVLDIKMPRMDGMD 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR  K S PV  L+      D+V GL+ GADDY+ KPF++  LV RIRA++RR   
Sbjct: 88  LLQRLR-QKTSMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRRQDA 146

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A           +I  GDL+++     V+ +G  + LT  E+ ++++L+ R     +++
Sbjct: 147 EAGVVVAETDENKVIERGDLTMDPLRHAVKWRGKDVTLTVTEFLLLQVLAQRPGFVKSRD 206

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++  YD +   + + ID  I +LRKK+ +     + IET++G GY
Sbjct: 207 QLMDVAYDDQVYVDDRTIDSHIKRLRKKMRSVDQEFSAIETLYGIGY 253


>gi|168179958|ref|ZP_02614622.1| two-component response regulator [Clostridium botulinum NCTC 2916]
 gi|182669104|gb|EDT81080.1| two-component response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  GF+ 
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKEGYNVIATDSMKESQQKLNKEKVDLIILDINLPDGNGFDY 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+   
Sbjct: 64  CLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSND 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-- 179
              ++I + D+   ++   +E  G  I L+  E ++++         L+KE  +  L+  
Sbjct: 123 CDFNIIQSKDIFFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIESLWNI 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DG    E   + V I ++R+K+        YI+T+ G GYV +E
Sbjct: 183 DGEFINE-NTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|153939788|ref|YP_001390660.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935684|gb|ABS41182.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
          Length = 230

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  GF+ 
Sbjct: 4   ILLVEDNMSLNRGIQFSLMKERYNVIATDSIKESQQKLNKEKVDLIILDINLPDGNGFDY 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+   
Sbjct: 64  CLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSND 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-- 179
              ++I + D+   ++   +E  G  I L+  E ++++         L+KE  + +L+  
Sbjct: 123 CDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNI 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DG    E   + V + ++R+K+        YI+T+ G GYV +E
Sbjct: 183 DGEFINE-NTVAVNVRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 242

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  L   +   L  + + V   + G+      +F   D ++LDL +    G  +
Sbjct: 7   IWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPGDDGLTI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +L+      D++ GL+ GADDY++KPF   EL ARI A++RR RG 
Sbjct: 67  LRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRR-RGA 125

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +        +I  G+ S++L A+T+E  G  + +T  E+ ++       +  L++E  
Sbjct: 126 VPAGTPVADGEVIGFGNNSLDLSARTLERDGEPVVITSGEFGLLAAFVQNPHRPLSRERL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +        E + + +DV + ++RK +        Y++TVWG GYV 
Sbjct: 186 IELARGPSSETDSRSMDVQVSRVRKLIEPDPSRPRYLQTVWGYGYVF 232


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K ++  ++L L    +       GE G++     E++ I+LDL L  I G 
Sbjct: 3   MAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRINGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K  TPV +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR  
Sbjct: 63  EVCRRLREIK-QTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                L  + G++ ++     V  + + ++LT  E+ ++ LL       +++   L+ ++
Sbjct: 122 FQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++    +++V+I  LR K+         IETV G GY L
Sbjct: 182 GYDEDVSTNVVEVYIRYLRNKIPGIK-----IETVRGVGYRL 218


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTV 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A       + ++  G   +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPASEEKVVEFGQFRLNLGTREMFRNDEPLTLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N +  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 186 MN-MARGREYSAMERSIDVQISRLRRMIEEDPSKPRYIQTVWGLGYVF 232


>gi|227500147|ref|ZP_03930217.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217764|gb|EEI83066.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 8/219 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPGF 60
           IL ++D+  +   I+ +LK  N  V   D+ ++ +E+   K  ++D I+LD+ +  I G 
Sbjct: 4   ILAVDDELDMLELIKNILKKNNHEV---DVYQNPLEIDNSKLSKYDLILLDIMMPGINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + +R  K+  P+  L+  +  ED V GL  G DDYI+KPF   EL+AR+ A +RR +
Sbjct: 61  NFCKEIR-NKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARVEAHLRREK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G++  +L +  V V   ++HLT  EYQ+ ELL+ RK    ++E     ++ 
Sbjct: 120 RERHTSLNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +   I   I  +R K      GKN IETVWG GY
Sbjct: 180 FDGIGDASAISEHIKNIRAKFQKY--GKNPIETVWGIGY 216


>gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 238

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 107/221 (48%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I   L+ E + V   + GE  +E   +  F  IILD+ L  I GF V
Sbjct: 8   ILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLPGIDGFTV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ IL+  +   D++ GL  GADDY++KPFN  E + R+R ++RRS  +
Sbjct: 68  CERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGMLRRSAWY 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +      GD  V L +         + LT  E +M+ L   R+   + +   L ++
Sbjct: 128 RPEPVEEGYRFGDNEVFLLSYHARTAQGEVDLTELEVKMLSLFFHREGEAIPRGEILENV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +    + E + +D FI +LRK          Y +TV G GY
Sbjct: 188 WGYSSDTETRTLDNFIVRLRKYFEPNPAKPVYFQTVRGVGY 228


>gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 238

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/220 (30%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+++ + V     GE+G+ L      + ++LD+GL D  G E
Sbjct: 12  RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV +L+  +   +KV  L +GA+DY++KPF  +EL+ARIR+++R++  
Sbjct: 72  VLREIRQWS-NVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLRQAGA 130

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +S+   G L ++L  + V + G  + L+ KEY ++ LL       +T+   L  +
Sbjct: 131 GSTVEESVFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLLKHAGRVVTQPQLLREV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           +    E +   + + + KLR+KL + A   +YI T  G G
Sbjct: 191 WGPTHEEDTHYLRILVGKLRQKLHDDAADPHYIVTEPGVG 230


>gi|148543652|ref|YP_001271022.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153066|ref|YP_001841407.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227363377|ref|ZP_03847503.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682015|ref|ZP_08161533.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530686|gb|ABQ82685.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224410|dbj|BAG24927.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227071566|gb|EEI09863.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324978659|gb|EGC15608.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 239

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 125/246 (50%), Gaps = 26/246 (10%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KF----YEFDAIILDLGLT 55
           M IL+IED+ ++   + +  K E ++    +   DG+E   KF    +++D I+LDL L 
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWHC---EFAYDGVEAEEKFNADPHKWDIILLDLNLP 57

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
              G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+
Sbjct: 58  KKDGMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKAL 117

Query: 116 VRRSRGHAQSL-------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELL 161
            RR+  H   L             I T +  +N   + V + G  +  LT KE+ +++ L
Sbjct: 118 YRRT--HLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTL 175

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +     T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY  
Sbjct: 176 ASKPRQVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKF 233

Query: 222 RENAKD 227
            +   D
Sbjct: 234 DDEGND 239


>gi|297202903|ref|ZP_06920300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197715240|gb|EDY59274.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 217

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL AR+RA+ RR+ 
Sbjct: 61  DVCRKIVELGMPTRVLMLTASGDVSDRVEGLEIGADDYLPKPFAFSELTARVRALGRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + V   G  + L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREVFRDGKEVQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  L   +   L +EN+   +   GE  +   +  ++D IILDL L  + G 
Sbjct: 1   MNILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R  +   P+ + +      D++ GL+ GADDYI KPF+  E+VAR++A++RRS+
Sbjct: 61  SVCREVR-KQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRSQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S      L ++ +A  V  QG  I LT  E++++E L   K+  +++++   + Y 
Sbjct: 120 --APSGADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAYT 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  I KLRKKL      +  I +V+G GY L+
Sbjct: 178 DHRVVSDRTMDSHITKLRKKLQQIH-PQEIIHSVYGVGYRLQ 218


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRRTQ 126

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A       +++I  G   +NL  + ++     + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGEFAVLKALVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N L  GRD   + + IDV + +LR+ L        Y++TVWG GYV 
Sbjct: 187 MN-LARGRDYSALERSIDVQVSRLRRMLEEDPAKPRYLQTVWGLGYVF 233


>gi|329927719|ref|ZP_08281831.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938297|gb|EGG34690.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 231

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           ++IL+IEDD  +   + E++  S      V    E  + L    E+  ++LDL L  + G
Sbjct: 5   IKILVIEDDNEINQLLCEIITNSGYVPQPVFSGTEALLYLANDREWSMVLLDLMLPGLAG 64

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+LR L   +   PV I+S  +  + KV  L+ GADDYI+KPF+ EE+ AR+   +RR 
Sbjct: 65  EEILRKLGPDR-RLPVIIISAKNEQQSKVAVLRMGADDYITKPFDVEEVAARLDIHLRRY 123

Query: 120 RGHAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R  A+  ++      D+ ++ D K V V G  + LT +E+ ++ELL        TK+   
Sbjct: 124 RRAAEPDLIRQLTYKDIHLDSDTKAVTVNGSGVVLTAREFTVLELLMSYPKKVFTKQNLF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   I V +  LRKKL+ A     YIET+WG GY LR
Sbjct: 184 EAVWGDAYLGDDNTITVHMSNLRKKLAQANPEAEYIETIWGMGYRLR 230


>gi|319790958|ref|YP_004152598.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593421|gb|ADU34487.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 240

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  LA  +   L    F       G  G+E  + +  D +ILDL L D  G E
Sbjct: 8   QLLMIEDDARLAQMVGEYLTQSGFAFNHAGDGASGLEQLQQHAPDLVILDLMLPDTDGLE 67

Query: 62  VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V R +R     ++K+S  V +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++
Sbjct: 68  VCRRIRALPGPISKVS--VLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVL 125

Query: 117 RR-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR     +   A +++  G L ++ +A+TV V G    LT  ++ ++  ++ R    LT+
Sbjct: 126 RRRSENATESEASTVMRFGTLEIDRNARTVSVAGALADLTSYQFDLLVAMAERAGRVLTR 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +  +     E   + IDV + ++R  +   A     I TV G GYV 
Sbjct: 186 DQIMEAVRGRELEAFDRSIDVHMGRIRAAIEVDAKNPKRILTVRGVGYVF 235


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K ++  ++L L    +       GE G++     E++ I+LDL L  I G 
Sbjct: 4   MAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRINGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K  TPV +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR  
Sbjct: 64  EVCRRLREIK-QTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 122

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                L  + G++ ++     V  + + ++LT  E+ ++ LL       +++   L+ ++
Sbjct: 123 FQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++    +++V+I  LR K+         IETV G GY L
Sbjct: 183 GYDEDVSTNVVEVYIRYLRNKIPGIK-----IETVRGVGYRL 219


>gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 237

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K ++  ++  L  +N+ V+    G++ +E+    E D +ILDL L  + G 
Sbjct: 4   IKILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLMLPKLSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K   PV I S      D++ GL+ GADDY++KPF+ +ELV R++A++RR  
Sbjct: 64  EVLKNIR-NKSKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIE 122

Query: 121 GHA---QSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK---- 171
            +      +I T D  L ++L        G  + LT  E+ +I  L    N   T+    
Sbjct: 123 KYNIPRADIIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEII 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           E+     YD  D    + ID  I  +R+K+ +      YI+T++G GY
Sbjct: 183 ELTFGLDYDAYD----RAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGY 226


>gi|307128920|ref|YP_003880936.1| transcriptional regulatory protein cpxR [Dickeya dadantii 3937]
 gi|306526449|gb|ADM96379.1| Transcriptional regulatory protein cpxR [Dickeya dadantii 3937]
          Length = 232

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 22/238 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   +  +L+ E FNV V   GE  + +        ++  + +    G +
Sbjct: 3   KILLVDDDRELTSLLRELLEMEGFNVVVAHDGEQALSVLDDSVDLLLLD-IMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  +  TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKEVR-QRYQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIH--------------LTGKEYQMIELLSLRKNT 167
             Q     G+ S    A T+EV   R++              LTG E+ ++ LL+ R   
Sbjct: 121 TDQQ--QAGEAS----APTIEVDALRLNPGRQEASFDDEVLDLTGTEFTLLYLLAQRLGQ 174

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +++E     +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 175 VVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSTA 232


>gi|299143562|ref|ZP_07036642.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518047|gb|EFI41786.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 241

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  +IE+ LK+E + V+    G + IE+    +    I+DL +  + G   
Sbjct: 16  ILVCDDEKDIVKAIEIYLKAEGYEVFKAYDGLEAIEIINREQIHLCIIDLMMPKVDGISA 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +  +R  K + P+ ILS  S I DK+ GL  GADDYI KPFN  ELVAR+ +++RR  S 
Sbjct: 76  ILKIR-EKHNIPIIILSAKSEITDKIIGLNVGADDYIVKPFNAIELVARVNSVLRRFTSL 134

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A   + +   G + +   +K V +    ++LT  EY+++ LL   K+     +     
Sbjct: 135 GSADIDKDIYKAGRVVIKNSSKEVFIDDEAVNLTPYEYKILLLLMKNKSRVFNSDEIYRQ 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +++       KII V I  LR KL       + I++V+G GY
Sbjct: 195 VWEDEAHDVKKIISVHISHLRDKLEINPRKPDLIKSVYGMGY 236


>gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp.
           hominis C80]
          Length = 224

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 119/219 (54%), Gaps = 2/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ L+++DD  L H +   L++++        GE  ++    +  D  ++D+ +T + GF
Sbjct: 2   IKCLIVDDDPKLLHYVSKHLEADHIKTVTHSSGEQALKYLNHHRVDIAVVDIMMTGMDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + L+  +   PV +L+   ++ DK R   SG DDY++KPF  +EL+ RIRA++RR +
Sbjct: 62  ELCQLLK-DRYQLPVIMLTARDALSDKERAFVSGTDDYVTKPFEIKELLFRIRAVLRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q+ I  G++ +N +   V V   +++L  KE+Q++ LL        T+E  +  ++ 
Sbjct: 121 INTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLCTHPRQIYTRESIIEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + + +DV I +LR +L         I+TV G+GY
Sbjct: 181 FDYTGDERTVDVHIKRLRTRLKKLEATIE-IQTVRGQGY 218


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 20/237 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ +D++ +       L+ E   V+V + GE+ I L K +  D ++LDL +  + G EV
Sbjct: 5   IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R     TP+ +L+      D++ GL  GADDY++KPF+  ELV R+  I+RR+   
Sbjct: 65  CDLIRQTD-DTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123

Query: 120 ---------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                              Q++ + G LS+    + V V    + LT KE+ ++ LL++ 
Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEG-LSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++   LN ++D   + +   + V + +LR+K+        +I+TVWG GY L
Sbjct: 183 PGKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239


>gi|148509170|gb|ABQ81807.1| response regulator [Pseudomonas alkylphenolia]
          Length = 238

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL IEDD  L   +   L+   F V     G DG+ + +   FD +++D+ L  + G +V
Sbjct: 11  ILAIEDDPVLGAHLHEELQRGGFKVTWCKNGRDGLAVARESRFDVVLMDILLPGLNGLDV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L  LR +  STPV ++S + +  D++ G Q GADDY+ KPF+  EL  RI AI+RR    
Sbjct: 71  LAKLRESS-STPVIMMSALGAEADRISGFQRGADDYLPKPFSMAELKVRIEAILRRVALE 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R     +   G L  +  A  V        LT  EY++++ L       L+K      +
Sbjct: 130 RRRQEAPVQQAGALQFDEQACDVCCGERWAGLTLSEYRLLDTLHRSHEEVLSKAFLYQQV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +D+ + ++R+KL      +  + TVWG+GYVL
Sbjct: 190 LQRGYARHDRSLDMHVSQIRRKLKTIGYQERELRTVWGKGYVL 232


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K Y+ D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELR-KDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 120 --RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              G   S LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E  V  +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|313681683|ref|YP_004059421.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154543|gb|ADR33221.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 215

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 12/221 (5%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD  LA  +   L+  +F V   D     + + K  +FDA+ILDL L  + G EV  
Sbjct: 1   MIEDDLELAEILTEFLEQYDFQVTTEDDPFKALSILKLEKFDAVILDLTLPGMDGLEVCE 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----SR 120
           A+R ++ + P+ I S  S + DK+  L+ GADDY+ KP++  ELV+RI +++RR    S 
Sbjct: 61  AIR-SRQNIPIIISSARSDVTDKINALELGADDYLPKPYDPRELVSRIHSVLRRYDAVSI 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++S     D  +N  A  +  +   I LT  EY ++  +  ++   +++E  ++++  
Sbjct: 120 AASES---ACDFKLNESAMQISYKNRPIELTNAEYGILAHMIKKQGMVVSREDLIHNVSA 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   K IDV + ++R KL    G K  IE++ G GY L
Sbjct: 177 INEDSSNKSIDVMMGRIRNKL----GDKALIESIRGIGYKL 213


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I  + +   + V     GE  ++  K    D IILD+ +  + GF++
Sbjct: 5   ILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLK-TNVDLIILDVMMPQMDGFDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
            + +R  +I  P+  LS   S  DKV+G   G DDYI+KPF  +EL+AR+ A +R   R 
Sbjct: 64  CKVIR-EQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQRD 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   Q+  + G+L++N     V + G +I LT KE++++ELL++      +KE     ++
Sbjct: 123 RVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++  I V I  LR KL++      +I+TVWG GY L +
Sbjct: 183 GIDAMGDLNTIIVHINNLRAKLTSGM-STYHIKTVWGVGYKLEK 225


>gi|291303381|ref|YP_003514659.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572601|gb|ADD45566.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 218

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA +I   L++E   V +   G   +E     ++D ++LD  +  + G 
Sbjct: 1   MRVLVVEDEPMLAEAIAEWLRAEPHAVDIALDGAAALERVWVNDYDVLVLDRDIPRVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +  ++    + +L+  + I D+V GL  GADDY++KPF   EL AR+ A+ RRSR
Sbjct: 61  EVCRQVVDSESEVRILMLTAAAEIGDRVDGLSLGADDYLTKPFAFPELAARVHALGRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++    ++V+   + V   G  I L+ KE+ ++  L       ++ E  L   +D
Sbjct: 121 PAAPPVLRRAGITVDTARRQVFRDGRYIPLSKKEFAVLTELVRGDGEVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ + I K+R+KL    G    IETV G GY
Sbjct: 181 EHVDPFTGVVRLTILKVRRKL----GEPQIIETVPGVGY 215


>gi|254390535|ref|ZP_05005750.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815619|ref|ZP_06774262.1| Transcriptional regulatory protein cutR [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443968|ref|ZP_08218702.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704237|gb|EDY50049.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328218|gb|EFG09861.1| Transcriptional regulatory protein cutR [Streptomyces clavuligerus
           ATCC 27064]
          Length = 217

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++   L+ E   V V   G   +E     ++D ++LD  L  + G 
Sbjct: 1   MRVLVVEDEQLLADAVATGLRREAMAVDVVYDGAAALERIGVNDYDVVVLDRDLPLVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +    + T V +L+    + D+V GL+ GADDY+ KPF   EL AR+RA+ RR+ 
Sbjct: 61  DVCRRVVELGVPTRVLMLTASGDVSDRVEGLELGADDYLPKPFAFTELTARVRALGRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++ + + +   G  I L  KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 VPLPPVLERAGIKLDPNRREIFRDGREIQLAPKEFAVLEVLMRSEGAVVSAEQLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +P   ++ V +  LR+KL    G    I TV G GY
Sbjct: 181 ENTDPFTNVVRVTVMTLRRKL----GEPPVIVTVPGSGY 215


>gi|66046313|ref|YP_236154.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257020|gb|AAY38116.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +E  L+ + FNV + + G+ GI++ + ++ D I+LD+ L  + G +
Sbjct: 5   RILIVEDDADSASILEAYLRRDGFNVGLAENGQRGIDMHRQWKPDLILLDVMLPLVSGTD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL A+R     TPV +++ M    +K+  L+ GADDY+ KP+N  E+VAR+ A++RRS  
Sbjct: 65  VLSAVRRCS-DTPVIMVTAMGDEPEKLGALRYGADDYVVKPYNPREVVARVHAVLRRSLQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G+ +  +   +L V LDA T  ++G       + LT  E++++  L    +   T+E  
Sbjct: 124 SGNNERHLRYQNLLVELDAVTAIIEGQDGAETVLDLTPTEFKILSTLLKTPSKAFTREEL 183

Query: 175 LN-HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L   L D   E   +++D  +  LR+KL    G +N + TV   GY  R
Sbjct: 184 LEICLPDS--EALARVVDAHVHNLRRKLE-IHGVENVLVTVRSVGYRFR 229


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  ++ + +  +  + G+  +ELC+    D +ILDL L D+ G 
Sbjct: 1   MKILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGL 60

Query: 61  EVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ R +R   +  + P+ +++  +   D V GL+ GADDY++KPF+ + L+ARI++++RR
Sbjct: 61  DICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120

Query: 119 S----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R ++   I    L ++     V   G  + L+  E+ ++E L+  K    +++  
Sbjct: 121 KGEAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGY 219
           +N +         + IDV I  +RKK+ ++    N +IET+ G GY
Sbjct: 181 INAVKGSSYPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGY 226


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RILL+ED++     +   L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 9   RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G  V   +R +  S PV +L+   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 69  PRLDGTGVCTRIRRSS-SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR  A   + ++V G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  L+    E + K +DV I +LR ++   A     I TV G GY L
Sbjct: 188 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRL 237


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV-YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD  L   ++  L+ + + V  V D  +    L +   ++ ++LDL L    G 
Sbjct: 13  RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSREL-YNLMVLDLMLPGEDGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R LR A    P+ +L+      D++ GL +GADDY+ KPFN  EL+ARI+A++RR  
Sbjct: 72  SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQV 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   +   +  G  +++L  + +   G  + LT  E+ +++ L       LT++ 
Sbjct: 132 KELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDK 191

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV + +LR+ + +      YI+TVWG GYV 
Sbjct: 192 LMN-LARGREWSAMERSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVF 239


>gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 221

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 1/218 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +LIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV 
Sbjct: 1   MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    +
Sbjct: 61  RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERES 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
                 G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++   
Sbjct: 120 SDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +++D  + +LR K+ +       I TV G GY L
Sbjct: 180 LGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 217


>gi|238794125|ref|ZP_04637741.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
           29909]
 gi|238726523|gb|EEQ18061.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
           29909]
          Length = 221

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 117/218 (53%), Gaps = 4/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+ED   L+H ++  L    F V V + G     L +   +  ++LD+ L  + G ++L
Sbjct: 1   MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYTLVVLDVALPRLNGLDLL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR    + PV +L+  + + D+V+GL  GADDY++KPF  +EL ARIRA++RRS G  
Sbjct: 61  ARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRRSVGGT 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             ++  GDL+ + D     +    + LT +E  ++  L  R+   + K+     ++   D
Sbjct: 121 GQVVQFGDLTYH-DEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQIFTLSD 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   + I++++ ++RKKL    G    I+T+ G GY L
Sbjct: 180 DANPESIELYVHRVRKKLH---GSNVSIQTLRGLGYSL 214


>gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 227

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DL  +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVADLVYDLDTLEVTREGRMLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            G D P+   +   + +LR+ +      K  ++TV G GY L E 
Sbjct: 181 -GDDCPDSDSLRSHVHQLRQVIDKPF-AKPLLQTVHGVGYRLAEG 223


>gi|84622759|ref|YP_450131.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578201|ref|YP_001915130.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|84366699|dbj|BAE67857.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522653|gb|ACD60598.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 225

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A ++   L+     V     G  G+ L   +EFDAI+LDL L  + G 
Sbjct: 1   MRILVIEDNSDIAANLGDYLEDRGHTVDFAADGVTGLHLAVVHEFDAIVLDLNLPGMDGI 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR  A+  TPV +L+   S+++K+ G  SGADDY+ KPF  +E+  R+ A+ RR 
Sbjct: 61  EVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G    ++ TGDL  NLD   V  +G  + L     ++++ L       +T++     ++
Sbjct: 121 KGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            G + P+   + V I  LR  + +       I+T  G GY
Sbjct: 181 -GEELPDSDSLRVHIHGLR-AVVDKPFDVAMIQTRHGIGY 218


>gi|17546455|ref|NP_519857.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17428753|emb|CAD15438.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 230

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA ++E  L    F V     G     L    ++  ++LDLGL  + G 
Sbjct: 1   MRILLVEDNPKLAGTLEEALGQAGFTVDCVHDGHAADLLLTTQDYALLLLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ +   PV IL+   ++E++VRGL  GADDY++KPF+  E+ AR RA++RRS 
Sbjct: 61  EVLRRLRLRRNPLPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH ++ +  G L  +  +    ++G  + LTG+E  ++E+L LR    + K      ++ 
Sbjct: 121 GHERTQLQCGPLHYDGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      I++++ +LRKKL    G    I  + G GY+L
Sbjct: 181 INESVNADAIEIYVHRLRKKLD---GSGVAIVMLRGLGYLL 218


>gi|330977887|gb|EGH77790.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD+ L   +   L  E+F+V  T+  E+G         D ++LD+ +  I G EV
Sbjct: 4   VLLVDDDRELTEMLSQYLTRESFDVTCTNSAEEGEVEALSGRHDIVVLDIMMPRISGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R A+   PV +L+      D++ GL+ GADDY+ KP +  ELVAR+RAI+RR R  
Sbjct: 64  LRRIR-AQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRAV 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE-MFLN 176
                 + +I  G+L +    +    QG  + LTG E+ ++E L+      ++K+ + +N
Sbjct: 123 PVIETVRDVIQAGELMLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSMN 182

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  GR      + IDV I  +R KL      +++I++V   GY+L
Sbjct: 183 AL--GRPLARYDRSIDVHISSIRHKLGPRNDNQSWIQSVRNLGYML 226


>gi|325662457|ref|ZP_08151063.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471291|gb|EGC74515.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +      +N+ +   + G + +E       D I+LD+ +  I G E
Sbjct: 4   KILIVDDDRELLKMLHRYFTLKNYTIITAENGVEALEKISVNP-DIILLDVNMPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R   +S P+  L+     +D+V GL SG DDY+ KPF+ +EL ARI A ++R  R
Sbjct: 63  VCRRIRDI-VSCPIIFLTAKVEEQDRVIGLLSGGDDYVLKPFSLKELDARIFAHLKREER 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H ++     GDL ++  +K V+++G  +  T  EYQ+IE LS+       KE     + 
Sbjct: 122 LHRKTEQRFYGDLIIDYVSKHVQIKGEELEFTKLEYQIIEFLSMNPEMVFDKERIYEKIR 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E + +++   I ++RKKL        YIET+WG GY
Sbjct: 182 GYDAEGDSRVVTELIRRIRKKLKQYT-EHEYIETIWGIGY 220


>gi|167903136|ref|ZP_02490341.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 260

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+A A+  +L+L    F+V     G   I        DA++LD+ L D+ G E
Sbjct: 6   KVLLVEDDEAQANWAKLVLTRGRFDVTHCQTGGQAIRAMTKEVPDAVVLDMRLPDVHGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R      PV +LS        V    +GADDY+ KP  + E +ARI A++RR +G
Sbjct: 66  VLVWIRRNFFDVPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRR-KG 124

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           HA S  I  G ++++L  K V + G  + +   EY+++E+++    + + +E+ +N ++ 
Sbjct: 125 HAVSGTIEIGGIAIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIW- 183

Query: 181 GR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           GR  DE   + +D  + ++R KL         + +V+  GY L
Sbjct: 184 GRSIDEAVSRSLDTHVYRIRHKLKVHGVSNVSLRSVYNLGYRL 226


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V + LR     A+I  PV +L+ +S  ++KV G  +GADDY++KPF  EE++AR+RA++R
Sbjct: 63  VCQRLRRDDRTAEI--PVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+    Q+     ++  G+L++  +          + LT  E++++  L  R   T++  
Sbjct: 121 RTDRIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 181 EILREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|116053034|ref|YP_793353.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588255|gb|ABJ14270.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D ++LD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLR-KKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLHLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++DV I +LR K+ N    K  I TV G GYV  E
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKVDNPFPNK-LIHTVRGIGYVCEE 221


>gi|254487709|ref|ZP_05100914.1| DNA-binding response regulator [Roseobacter sp. GAI101]
 gi|214044578|gb|EEB85216.1| DNA-binding response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 12/224 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED---GIELCKFYEFDAIILDLGLTDI 57
           MRIL++ED   +A +I   L          DL E+     E      +DA++LD+ L D 
Sbjct: 1   MRILIVEDATDMAEAIVTRLARSGM---ACDLAENIAKADEHLAVQRYDALVLDINLPDG 57

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++LR +R     TPV +L+   S++D+V  L  GADDY+ KPF+  EL AR+RA++R
Sbjct: 58  LGTDLLRNIRNRADRTPVLMLTARFSVDDRVSALDLGADDYLVKPFDHRELEARLRALLR 117

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R       +    +LS      + E  G+RI LT +E  ++ +L      T++KE     
Sbjct: 118 RETDQKSDVQKVAELSFYPATLSAEHSGNRIELTRREAALLGVLLRHARQTISKERLYEG 177

Query: 178 LYDGRDEPEVKI--IDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +Y   DE +V +  I+++I +LR+K+   AG    IET  G GY
Sbjct: 178 IYSF-DEVDVGLNAIELYIGRLRRKI---AGSGAVIETQRGMGY 217


>gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 228

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
             +     + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 123/233 (52%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ + + +    + ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  +   P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 67  VCQELR-KESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125

Query: 122 HAQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S   T       G L ++++ + V   G RI LTG E+ ++ELL  +     ++   
Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185

Query: 175 LNHLYDGRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++    E  +  +++DV I +LR KL       + I T  G GY+ +  +
Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGYLFQNTS 238


>gi|158311947|ref|YP_001504455.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158107352|gb|ABW09549.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 219

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R++++ED+  LA ++   L  E+F V V   G++ +E C  +++D ++LD  L  + G 
Sbjct: 2   VRVMVVEDEPELAGALCEALTRESFAVDVAYDGDEALEKCAAHDYDVVVLDRDLPVVHGD 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+   + ST V +L+  S+I  +V GL  GADDY+ KPF   EL AR+ A+ RR+ 
Sbjct: 62  DVCRAIVATQRSTRVLMLTAASAIRARVEGLAIGADDYLVKPFALAELSARVHALARRTA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++    L V+  ++TV   G  + LT KEY ++  L       L+ E  L  ++D
Sbjct: 122 PAAAPILERAGLRVDQASRTVTRDGRSVILTNKEYAVLVELLRAAGGVLSAEQLLEKVWD 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               P    + + + KLR+KL    G    IET+   GY
Sbjct: 182 ENIAPFTNTVRMTVMKLRRKL----GTPQLIETLPAAGY 216


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +   L    +       G   +++ +    D IILDL L D+ G EV
Sbjct: 4   ILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + + P+ +L+       ++ GL  GADDY+ KPF+  E+VAR++AI+RRS   
Sbjct: 64  CREIR-RQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSADD 122

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  V+   GDL V+   KTV   G  +HLT  EY++I++L+       ++E  +  L+
Sbjct: 123 LLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKLF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + + ID  +  LR K+        Y +TV+G GY
Sbjct: 183 GFDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGY 222


>gi|308050547|ref|YP_003914113.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632737|gb|ADN77039.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 230

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/202 (35%), Positives = 113/202 (55%), Gaps = 4/202 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ +A  I    +++   +   D GE G+ L +  +FDAIILDL L  + G  
Sbjct: 8   RILLVEDNRDVAGIIFDFFEAQGVVLDYADNGELGLTLAREQDFDAIILDLMLPRMDGRT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR     TP+ +L+ + S ED + G   GADDY++KPF+ + L AR+ A+VRR RG
Sbjct: 68  LCKKLREEGKRTPILMLTALGSREDTLTGFDCGADDYLAKPFDLDILQARLTALVRRYRG 127

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
               L    G+L +N + ++   QG  + L    Y ++ELL       +T+E   + L+ 
Sbjct: 128 QVTPLERHFGELVLNPNTRSATRQGRPLALNPTTYTILELLCRTAPEIVTRETLCDALWP 187

Query: 180 DGRDEPEVKIIDVFICKLRKKL 201
           DG  EP  +++   I +LR +L
Sbjct: 188 DG--EPNNEVLRSHIYQLRNQL 207


>gi|289646445|ref|ZP_06477788.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 246

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEM 173
               + G     +  GD  ++L  + ++ +G  +H LT  E+ +++ L +    +LT++ 
Sbjct: 132 PVPGAPGSEDESVSFGDYELSLATRELK-RGDVVHMLTTGEFAVLKALVMHARESLTRDK 190

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +N L  GR+   + + IDV I +LR+ +        YI+TVWG GYV 
Sbjct: 191 LMN-LARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 238


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +    +  L+ E + VY    G +G +L   ++ D I+LDL ++   G+E
Sbjct: 12  RILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKDGWE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  + + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I++R   
Sbjct: 72  LCEEIR-QQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V  +++ LT KE++++ +++       ++   
Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D   +     + V + +LR+KL        +I TVWG GY    N  +E
Sbjct: 191 LELIWDFEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPNGGNE 244


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALR----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           + + LR     A+I  PV +L+ +S  + KV G  +GADDY++KPF  EE++AR+RA++R
Sbjct: 63  ICQRLRRDERTAEI--PVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLR 120

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+    Q+     ++  G L++  +       G  + LT  E++++  L  R   T++  
Sbjct: 121 RTDRIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++    + +++ I V I  LR KL        YI+TV+G GY L
Sbjct: 181 EILREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCL 229


>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 239

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR RA++RR    
Sbjct: 74  TKRIE-AQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDRA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++D  D    + +D  +  LR KL     G + I TV G GY  
Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKL-----GASTIRTVHGVGYAF 234


Searching..................................................done


Results from round 2




>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score =  321 bits (823), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF
Sbjct: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR
Sbjct: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236


>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  316 bits (812), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 132/229 (57%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ ++   ++  L+   F V     G+  +E+ K  + D IILDL L  + G 
Sbjct: 2   IKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V + LR  + +TP+ +L+      DK+ GL+ GADDY++KPF+  E++AR++AI+RR  
Sbjct: 62  DVCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRRFQ 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + GH + L+  GD+ +  +   V  +  ++ LT KE++++  L+  +   LT++ 
Sbjct: 122 NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLTRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV +  LR+KL +      YI+TV G GY L 
Sbjct: 182 LLNAVWNYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKLE 230


>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
 gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
           [Bacillus halodurans C-125]
          Length = 239

 Score =  315 bits (808), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 132/232 (56%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   ++  L+   + V     G  G++L K   FD IILDL L ++ G +
Sbjct: 4   RLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR +K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RR   
Sbjct: 64  VCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRVGH 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     + S +  G++ +  D   V ++G  + LT KE++++  L+  K   LT++
Sbjct: 124 AQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN +++     + +I+DV I  LR+K+        YI+T+ G GY L E 
Sbjct: 184 QLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEEP 235


>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 229

 Score =  314 bits (806), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L+   F       G + ++  +  + D IILD+ L  + GFE
Sbjct: 6   KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR    S P+ +L+      D+V GL+ GADDY++KPF+  ELVAR+RAI+RR   
Sbjct: 66  VCRSLRARG-SMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q     I  GDL +N  +  V V+G  + LT KEYQ+++LL+  +    ++E  L  L
Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++G    + + IDV I  LR+K+        YI TV G GY  R+
Sbjct: 185 WEGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKFRD 229


>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 231

 Score =  314 bits (806), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E F V +   G  G+++ +    D IILD+ L  + G  
Sbjct: 3   KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L     +   P+ +LS      DKV GL+ GADDYI+KPF+  EL+AR++A +RR 
Sbjct: 63  VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       I  G L ++ D   V V G +  LT KE++++  L+       +++  L
Sbjct: 123 TTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      + + +DV I  +R+KL    G   +IETV G GY  +E
Sbjct: 183 EQIWGYEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRFKE 230


>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  313 bits (803), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L+ E F+V V   G+  +E    +  D I+LDL L  + G E
Sbjct: 5   KVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  +   DKV GL+ GADDY++KPF+  ELVAR++AI+RR   
Sbjct: 65  VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +  G+L ++ +   V  +G  + LT KE++++  L+  +   L+++  
Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LN ++D     + +I+DV +  LR+K+   +    YI+TV G GY   
Sbjct: 185 LNAVWDYDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGYKFE 232


>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
           [Bacillus pseudofirmus OF4]
          Length = 241

 Score =  310 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 83/234 (35%), Positives = 132/234 (56%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++++A  ++  L+   F V V   GE+G+ L K   FD +ILDL L  I G +
Sbjct: 4   RILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKIDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RRS  
Sbjct: 64  ICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSAQ 123

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            +++           +I  GD+ +  +   V V    + LT KE+++   L+  K   LT
Sbjct: 124 LSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVLT 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  LN +++     + +I+DV I  LR+K+        YI+TV G GY L E 
Sbjct: 184 RDQLLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEEP 237


>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
 gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 235

 Score =  309 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+   F+V     GE+ +      +   IILDL L  + G +
Sbjct: 4   KILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLDGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  +I TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++AI+RR+  
Sbjct: 64  VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTEI 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +V G+L +  +     + G  + LT KE++++  L+  K   LT++  L+
Sbjct: 124 VQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +++     + +I+DV I  LR+K+        YI+TV G GY L E  + E
Sbjct: 184 AVWNYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEEPKRHE 235


>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  309 bits (793), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+   F V     GE+ +E   F +   IILDL L  + G E
Sbjct: 4   KILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR+  
Sbjct: 64  VCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTDL 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V GDL +  +     V    + LT KE++++  L+  K   LT++  L+
Sbjct: 124 AQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++     + +I+DV I  LR+K+        YI+TV G GY L E 
Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEEP 231


>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
 gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  308 bits (791), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 131/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E ++V     GE+ ++L    + D  I+D+ L  + GFE
Sbjct: 17  KILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDGFE 76

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++R +R      +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 77  LVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 136

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      I   DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 137 SAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 196

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 197 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 251


>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
 gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
           Ice1]
          Length = 232

 Score =  307 bits (789), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +   L+ E   V V   GE  +   +    D IILDL L  + G E
Sbjct: 3   KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R    S   P+ +L+      DKV GL+ GADDY++KPF+  ELVARI+A++RR+
Sbjct: 63  LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRRA 122

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  G+L+++ D   + V G +  +T KE++++  L+       T+E  L 
Sbjct: 123 TRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + +DV I  LR+K+    G   YIETV G GY  R+ 
Sbjct: 183 KIWGYDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKFRDP 230


>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 232

 Score =  307 bits (789), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L++  F V     G+  ++L +  + D +ILD+ L  I G E
Sbjct: 5   KILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R  R  +     PV +L+  +   DKV GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  VCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRRA 124

Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +  +I  G ++++++   V V+G R   T KE++++ LL+       ++E  L +
Sbjct: 125 DKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +DV I  LR+K+   +    +IETV G GY   E 
Sbjct: 185 IWGYDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNEP 231


>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  307 bits (788), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 131/232 (56%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+   F V   + GE+ IE       + IILDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K+ TP+ +L+      DK+ GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   IV GDL +  D       G R+ LT KE++++  L+  K   LT++  L+
Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +++     + +I+DV I  LR+K+        YI+T+ G GY L E  +++
Sbjct: 184 AVWNYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEEPKRND 235


>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  306 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 132/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+++++  ++  L+   F V   + GE+G       + D I+LDL L  + G E
Sbjct: 4   KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ          I+ GDL +  D         ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEEPKVDE 238


>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
 gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
           [Bacillus clausii KSM-K16]
          Length = 240

 Score =  306 bits (786), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 80/237 (33%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ +++  ++  L+   F V     G+ G +  K  +FD IILDL L  + G +
Sbjct: 4   RILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +I  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR+RAI+RR   
Sbjct: 64  VCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIEQ 123

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
              ++          I   DL++      V V+   + LT KE++++  L+  K   LT+
Sbjct: 124 TGGAVAKNEQGKGKSIQIADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN +++     + +I+DV I  LR K+   +    YI+T+ G GY L E AK+E
Sbjct: 184 DQLLNAVWNYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEEPAKNE 240


>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 234

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 133/231 (57%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+   F V   + GE+ IE   F +   IILDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    IV GDL +  D+     +G R+ LT KE++++  L+  K   LT++  L+ 
Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++     + +I+DV I  LR+K+        YI+T+ G GY L    +++
Sbjct: 184 VWNYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKLEGPKRND 234


>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +   I+  L+ E F V     G+  +++ K    D I+LD+ L    G  
Sbjct: 3   KILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDGLS 62

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L    A  S P+ +LS      DKV GL+ GADDYI+KPF+  EL+ARI+A +RR 
Sbjct: 63  VCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRRQ 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q       I  G L ++ D   V   G +  LT KE++++  L+       T++  
Sbjct: 123 TVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDFL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      + + +DV I  +R+KL        +IETV G GY  +E
Sbjct: 183 LEQIWGYDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRFKE 231


>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 235

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+  L+ +N  V     GE+G+ L +    D IILD+ L  + G E
Sbjct: 3   KILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   P+ ++S      D V GL+ GADDYI+KPF+  EL AR++A +RR+
Sbjct: 63  VCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRA 122

Query: 120 R-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         SLI  G L +NLD   V V+G  ++ T KE++++ +L        T+EM 
Sbjct: 123 QYDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREML 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++   +  + + +DV I  +R+K+    G   YI TV G GY   E+
Sbjct: 183 LEQVWGFDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKFSED 232


>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 261

 Score =  306 bits (785), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   +E  LK   F V     GE+G+        D IILDL L  + G E
Sbjct: 27  RVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLDGIE 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR+  
Sbjct: 87  VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 + H+   +V G L +  D         R+ LT KE++++  L+  K   LT++ 
Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 207 LLSAVWNYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEEPKADE 261


>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 238

 Score =  306 bits (784), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 133/235 (56%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+++++  ++  L+   F V   + GE+G       + D I+LDL L  + G E
Sbjct: 4   KLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQI 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ          I+ GDL +  D         ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 IAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR+K+ +      YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEEPKVDE 238


>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 223

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222


>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 232

 Score =  306 bits (784), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K +   ++  L+   ++      GE+G++L +    D I+LD+ L  + GF 
Sbjct: 4   RILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   ++TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RRS  
Sbjct: 64  VLRILRQT-MTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +      ++I+  +LS++L    VE  G  I LT +E+ +++ L   +    ++EM L  
Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +V+ +DV I +LR+K+ +      YI T  G GY   E ++
Sbjct: 183 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 231


>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 223

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       ++  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222


>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 223

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V +   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCREIRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L++NL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWRIKTVWGVGYKFE 222


>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   ++  L+   ++      GE+G+++ +    D I+LD+ L  + GF 
Sbjct: 3   RILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR   ++TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RRS  
Sbjct: 63  VLRILRQT-MTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++    L+++L    VE  G  I LT +E+ +++ L   +    ++EM L  
Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +V+ +DV I +LR+K+ +      YI T  G GY   E ++
Sbjct: 182 VWGYEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYFSEESE 230


>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
 gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A  +   L    F   + + G+ G EL    +   I+LDL L  + G E
Sbjct: 4   KILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V ++LR  K++TP+ +L+      DKV GL+ GADDY++KPF+  E+VARI+A++RR+  
Sbjct: 64  VCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRASN 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A   I  G L V  D   V +   ++  T KE++++  L   KN  LT++  L
Sbjct: 124 VPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++      + +I+DV I  LR+K+   +    +I+T+ G GY   E  +
Sbjct: 184 SAVWKYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEEPKE 234


>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 228

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   + L L+ E + V     GE+ +   +    D +ILD+ L    G+ V
Sbjct: 5   ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+      D+V GL  GADDY+ KPF+  ELVAR++A++RR+   
Sbjct: 65  CREIRAMS-NAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLA 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q    ++    L+VN D+  VEV G R+ LT KE++++  L+       ++E  L++++
Sbjct: 124 NQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     + + +D  I +LR+KL +      YI TVWGRGY   
Sbjct: 184 DYDYLGDPRTVDTHIKRLREKLESGVKQ-RYIRTVWGRGYKFE 225


>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
 gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
          Length = 247

 Score =  305 bits (783), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 13  KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 72

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++R +R      +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 73  LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 132

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 133 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 192

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 193 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 247


>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 223

 Score =  305 bits (782), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222


>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 233

 Score =  304 bits (781), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 133/230 (57%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+ ++A  ++  L+   F V     G+ G+EL +  +   I+LDL L ++ G E
Sbjct: 4   KVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RRS  
Sbjct: 64  VCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAP 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I  GD+ +      V  QG R+ LT KE++++  L+  K   LT++  L+ 
Sbjct: 124 QESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++     + +I+DV I  LR+K+        YI+T+ G GY + E   +
Sbjct: 184 IWNYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEEPTSE 233


>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
 gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
          Length = 242

 Score =  304 bits (781), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 12/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   +   L+   ++V     GE+ +E     + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123

Query: 122 HAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                            I  G+L +  +   V  Q  R+ LT KE++++  L+  K   L
Sbjct: 124 SQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           T+++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKPNE 242


>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 232

 Score =  304 bits (781), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+ E + ++  + G++ +E+ K  +   I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  EL+ARI+A++RR+
Sbjct: 65  VCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRT 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +       L ++ +   V   G ++ LT KE+Q++E+L   K   LT+E  L+ +
Sbjct: 125 LLKSTEEPFKFEGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  LR+K+ +      YIET+ G GY  
Sbjct: 185 WGYEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGYRF 227


>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 223

 Score =  304 bits (780), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V V   G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  DVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222


>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 231

 Score =  304 bits (780), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   + L L+ E F V +   GE+ ++  K      IILDL L  + G++V
Sbjct: 6   ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+      DKV GL+ GADDY++KPF+  ELVAR++AI+RR+   
Sbjct: 66  CREVRKFS-EVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRATPE 124

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q+     +    L++N  ++ V V    + LT KE+ ++  L+       T+E  L  +
Sbjct: 125 EQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLTAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      +++ +D  I +LR+K+        +++T+WG GY      K
Sbjct: 185 WGYDYYGDLRTVDTHIKRLREKVERDGNTP-HVKTIWGVGYKFEVQEK 231


>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 242

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 73/239 (30%), Positives = 129/239 (53%), Gaps = 12/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   +   L+   ++V     GE+ +E     + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQQ 123

Query: 122 HAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                            I  G+L +  +   V  Q  R+ LT KE++++  L+  K   L
Sbjct: 124 SQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           T+++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 TRDLLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKSNE 242


>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 135/235 (57%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D++++   ++  L+   F V     G+  ++      FD I+LDL L ++ G E
Sbjct: 4   HILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RR++ 
Sbjct: 64  VCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTKA 123

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   + +  IV GD+ +  D   V ++G+++ LT KE++++  L+  K   +T++ 
Sbjct: 124 AKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            LN +++     + +I+DV I  LR+K+        YI+T+ G GY L    KDE
Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEVPLKDE 238


>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 236

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 131/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E ++V+    G + ++  +  + D I+LD+ L    G E
Sbjct: 6   KILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 66  VCREIR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S I  G L+++ DA TV  +G  I LT +E++++  L+      +T+E  L
Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 185 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236


>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 223

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V VT  G DGI + K    D +ILD+ L    G+
Sbjct: 1   MKILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+ N       I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIENN-KYPWKIKTVWGVGYKFE 222


>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
 gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 357

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 131/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + L++E F V     G + + L    ++D +ILDL +  + G+ 
Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+   +  D++ GL+ GADDY+ KPF+  ELVAR++A++RRS+ 
Sbjct: 188 VCREVRKT-TALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +       ++    LS+N +++ V V    ++LT KEY M+ L++   + T T+E  
Sbjct: 247 APPAAQDGKPVVLNYPGLSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREEL 306

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  ++      + + +D  + +LR KL  A+G ++YI TVWG GY    +
Sbjct: 307 IESVWGYDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGYKFEVD 356


>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
          Length = 238

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V   + GE+G EL    + D I+LDL L  + G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K+ TP+ +L+      DKV GL+ GADDY++KPF+  E+VARI+AI+RR++ 
Sbjct: 64  VCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQT 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  +  G+L V  +     +    + LT KE++++  L+  K   LT++
Sbjct: 124 LIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E 
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEEP 235


>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
          Length = 239

 Score =  303 bits (778), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++R +R      +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 65  LVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
 gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A3 str. Loch Maree]
 gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Bf]
 gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum Ba4 str. 657]
          Length = 232

 Score =  303 bits (777), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R    +  TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     + G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      +IET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228


>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 239

 Score =  303 bits (777), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+G +L      D +ILDL L  I G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K+  P+ +L+      DKV GL+ GADDY++KPF+  E++AR++AI+RRS  
Sbjct: 64  VCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQA 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R   +  +  GDL V  +        + + LT KE++++  L+  +   LT+
Sbjct: 124 VIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E 
Sbjct: 184 DQLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEEQ 236


>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
 gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 239

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++R +R      +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++AI RR 
Sbjct: 65  LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRL 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 STATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 223

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+DD  +   I+L L+ E F V +   G DGI + K    + +ILD+ L    G+
Sbjct: 1   MKILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+      DKV GL+ GADDYI KPF+ +EL+ARI+A++RR++
Sbjct: 61  EVCRELRKIS-NIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQ 119

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       +V  +L+VNL    V+++   I +  KE +++  L+   N   T+E  L+H+
Sbjct: 120 GEVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I ++R+K+         I+TVWG GY   
Sbjct: 180 WGYNFVGDTRTVDVHIKRIREKIEKD-KYPWKIKTVWGVGYKFE 222


>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 233

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   I + LK   + V     GE+ +      + D ++LD+ L  + GFE
Sbjct: 8   RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR       V +L+      DK+ GL+ GADDY+ KPFN  EL ARIRA++RR R 
Sbjct: 68  VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIRK 127

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     I +G   ++L    V  +G  + LT +E+ ++ L         +++  LN ++
Sbjct: 128 AGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + K +DV I +LR+K+ +  G   YIETVWG GY  RE
Sbjct: 188 GADYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYRWRE 231


>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 236

 Score =  302 bits (776), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   L+ E + V     G+  +E     + D I+LD+ L  + G E
Sbjct: 5   KILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGVDGLE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  K +   P+ +L+      DKV GL+ GADDY++KPF+  ELVARI+A +RR+
Sbjct: 65  VCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRRN 124

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++++  G L ++++  +V + G ++  T KE+++++LL+       T+E
Sbjct: 125 FKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      + + +DV I  +RKK+    G K ++ETV G GY  RE A
Sbjct: 185 YLLEKIWGYDFAGDTRTVDVHIRHIRKKIEPEQGEK-FVETVRGVGYKFREMA 236


>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
 gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum NCTC 2916]
 gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A2 str. Kyoto]
          Length = 232

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     + G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      +IET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228


>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. Langeland]
 gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum F str. 230613]
          Length = 232

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     + G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      +IET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228


>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 227

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++ +   + L +++E F V     G+  ++L + Y  D +ILD+ L ++ G+ 
Sbjct: 5   RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGWT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      DK+ G   G DDY+ KPF+ +ELVAR++A+++RSRG
Sbjct: 65  VCRQIRQ-GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSRG 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +A +    I    LS+   ++ V +    I LT KE+ ++  L+       ++E  L+H+
Sbjct: 124 NANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + +D  +  LR KL N      YI TVWG GY   ++ 
Sbjct: 184 WGYDFYGDSRTVDAHVKNLRSKLGNYG---RYIVTVWGVGYKFDDSV 227


>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 239

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 131/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + V     GE+ +++    + D  I+D+ L  I GFE
Sbjct: 5   KILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R +R      +TPV  LS      DKV GL+ GADDYI+KPF+  EL+AR++A+ RR 
Sbjct: 65  LVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRL 124

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               QS       I+  DL ++++   V+V+G +++LT  E++++  L+  +    ++++
Sbjct: 125 SAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 185 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 227

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++ +   ++L L+ E F V     G+  +++    E++ IILDL L  I G+
Sbjct: 4   IRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVIDGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R  K   P+ +L+      DKV G + GADDY+ KPF+  ELVAR++A++RR  
Sbjct: 64  TVCKEVR-KKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLG 122

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L +  +++TV   G  + LT KE+ ++  L+  K    T+E  L  ++
Sbjct: 123 PKGPEQTLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++ +D  I +LR+KL   +   +YI TVWG GY   
Sbjct: 183 GYDFFGSLRTVDTHIKQLREKLGR-SKAASYITTVWGVGYKFE 224


>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 246

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L+S  F+  V   G++   +   Y  D ++LD+ L  + G +
Sbjct: 25  KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGID 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VL+ +R     TPV +L+      DKV GL+ GADDY+ KPF  +EL+AR++A++RR  S
Sbjct: 85  VLKWIRKEH-ETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  +    L++++D+ TV   G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    IETVWG GY   
Sbjct: 204 GYDYPGDSRTVDVHIKRLREKLEE--GSNWQIETVWGVGYKFE 244


>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 236

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E + VY    GE+ +E  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 TPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LLETVWGYDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYLRNPEQE 236


>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
 gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V     G++G +L    + D I+LDL L  + G E
Sbjct: 4   KILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQF 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +  G L +         +   + LT KE++++  L+  K+  LT++
Sbjct: 124 VPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E 
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEEP 235


>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 238

 Score =  302 bits (775), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  +        D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    ++ I   DL +  +      QG ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEEPKGDE 238


>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
 gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum B1 str. Okra]
          Length = 232

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E++AR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     + G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      +IET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228


>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 228

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK +   + L    E F V + + G++G+        + +ILD+ L    G++
Sbjct: 6   KILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDGWD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ +L+  S   DKV GL+ GADDY+ KPF+ +EL+AR++A++RR   
Sbjct: 66  ICREIRRMS-DIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++IV  +L ++ +   V+ Q   + L  KE++++  L+   N   T+E  L  ++
Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV + +LR+K+ +       I TVWG GY   
Sbjct: 185 GFDYYGDSRTVDVHVNRLREKIGSE-NDPWKISTVWGVGYKFE 226


>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  302 bits (774), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E + V     GE+ IE+      + I+LD+ L    GF+
Sbjct: 4   KILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  K++ P+ +L+      DKV GL+ GADDY++KPF   EL+ARI+A +RR   
Sbjct: 64  VCKKLRE-KLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    Q L+   DL ++L +  V  +G+ + LT +E+++++ L+ +     ++E  L  
Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +++ +DV I +LR+K+ +     +YI+T  G GY    N
Sbjct: 183 VWGYEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229


>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 228

 Score =  301 bits (773), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I L L+ E F V V   GE+ +    F   D +ILD+ L  + G+ V
Sbjct: 6   ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDGWAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++TP+ +L+      D+V GL+ GADDY+ KPF+  ELVARI+A++RR+RG 
Sbjct: 66  CREIRKT-MATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARGG 124

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             S   +    L V+     VEV G  + L  KE++++  L+       ++E  L +++ 
Sbjct: 125 RDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVWA 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +D  I +LR+KL  A   K YI TVWGRGY   
Sbjct: 185 YDYLGDTRTVDTHIKRLREKLE-AGSEKRYIRTVWGRGYKFE 225


>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
          Length = 283

 Score =  301 bits (772), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 52  KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 111

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 112 VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR   ++
Sbjct: 231 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 283


>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
 gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
          Length = 237

 Score =  301 bits (772), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +E  LK   + V     GE G +       D I+LDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A            I  G L +  +          + LT KE++++  L+  K   LT++
Sbjct: 124 TAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L+ +++     + +I+DV +  LR+K+        YI+T+ G GY L E 
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEEP 235


>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 239

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I  G+L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239


>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
          Length = 238

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  LK E + V V   GED + L +   +  +ILD+ +  I G 
Sbjct: 4   IRVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                SR   QSLI    L+++L   TV   G  I LT KE+++++  +       TK  
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +   +   + V I +LRKK+        +I+TVWG GY   
Sbjct: 183 LFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKFV 231


>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 231

 Score =  301 bits (772), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K L   I+  L+ E +  +    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR   ++ P+ +L+      DKV GL+ GADDYI+KPF+  ELVAR++A +RR   
Sbjct: 64  VLKTLRQ-SMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +       I   +L +++    VE     I LT +E++++  L L K    ++E  L  +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      +++ +DV I +LR+K+ +      +I T  G GY   +   
Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYFSDEKP 230


>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
 gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 240

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +   +   G + +++ K      I+LD+ L  + G++
Sbjct: 14  KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 73

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +   STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 74  VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V GD+S++ D   V   G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 134 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  +R+K+ +      YIET+ G GY  
Sbjct: 194 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRF 236


>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  301 bits (771), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  LK E ++      GE+ + L      D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ISTP+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRQ-SISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     S+   GDL+++ D   V+     I LT +E+++++ L+ ++ T  ++E  L 
Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +V+ +DV + ++R+KL        YI T  G GY   +
Sbjct: 183 KVWGYEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGYYFNK 229


>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
 gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
           licheniformis ATCC 14580]
 gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
 gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
          Length = 235

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  LK E + V+    G + +++ +    D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235


>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  301 bits (771), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K L   I+  L+ E +  +    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   KILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR   ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLKTLRQ-SMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +       I   +L +++    VE     I LT +E++++  L L K    ++E  L  +
Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      +++ +DV I +LR+K+ +      +I T  G GY   +   
Sbjct: 183 WGYEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYFSDEKP 230


>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
           [Oceanobacillus iheyensis HTE831]
          Length = 231

 Score =  300 bits (770), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 135/227 (59%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++   ++  +++  F   V   G++ I   +   +D I+LDL L ++ G E
Sbjct: 4   RILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR+ +++TP+ +L+      DKV GL+ GADDY++KPF+ +E++AR++AI+RRS+ 
Sbjct: 64  VCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQL 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H   ++  G+LS+  +    E+  + I  T KE++++  L+  K   ++++  L+ +
Sbjct: 124 SNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D     + +I+DV I  LR K+   +    YI+TV G GY + E  
Sbjct: 184 WDYDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEEPV 230


>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  300 bits (770), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  300 bits (770), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
 gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
          Length = 235

 Score =  300 bits (770), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 230

 Score =  300 bits (770), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  + GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKLDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+  
Sbjct: 65  VCKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      +  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 SASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     +V+ +DV + +LR+K+ +     N+I T  G GY    N
Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
 gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
          Length = 235

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   + V     GE+ ++  +  + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            + S           ++ GDL +  D      + +++ LT KE++++  L   K   LT+
Sbjct: 124 ASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
 gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
 gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
 gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 235

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235


>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
          Length = 234

 Score =  300 bits (770), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L+   +   V   G D +++ K      I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R        PV +++      DKV GL+ GADDY++KPF+  ELVAR++A++RR+
Sbjct: 65  VCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRT 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V G +S++ D   V   G ++ LT KE++++++L   +   +T++  L+ +
Sbjct: 125 ALKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  LR+K+ +      YIET+ G GY  
Sbjct: 185 WGYEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGYRF 227


>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
 gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
 gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
 gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
           BMB171]
 gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 235

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
           BEST195]
 gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 236

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 237

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   ++  L+ E F V V   G   +   +    D IILD+ L  + G E
Sbjct: 5   RILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  +   STP+ +L+      D V GL+ GADDYI KPF+  E+VAR++A +R  
Sbjct: 65  VCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAK 124

Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R         +  +V  DL V  D     V   R+ LT KE+++++LL+  +    ++E+
Sbjct: 125 RILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++      + + +DV I  LR+KL  +     YIETV G GY  +E
Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRFKE 234


>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 234

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      + +++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 234

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A+         +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  
Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ ++    NY+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLRNPEQE 234


>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
 gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
 gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
 gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
 gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Western North America USA6153]
 gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
           B]
 gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Vollum]
 gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Australia 94]
 gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
 gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
 gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
 gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
 gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
           Sterne]
 gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
 gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
 gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
 gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
 gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
 gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
 gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
 gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
 gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
 gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
 gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
 gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
 gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
 gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
 gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
 gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
           684]
 gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
 gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
           anthracis str. CI]
 gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 235

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
          Length = 234

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 230

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + +  +  GED +   K   FD ++LD+ L  + GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKMDGFT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+  
Sbjct: 65  VCKKVREFS-EVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + S    +  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 QSNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D     +V+ +DV + +LR+K+ +      +I T  G GY    N 
Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPNV 230


>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 230

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  + GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKLDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+  
Sbjct: 65  VCKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      +  G+L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 SAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     +V+ +DV + +LR+K+ +     N+I T  G GY    N
Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229


>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
          Length = 242

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 128/235 (54%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V V   GE+G+       FD I+LDL L    G E
Sbjct: 4   KILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR + 
Sbjct: 64  VCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQQ 123

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                            IV GD+ +  +      +  R+ LT KE++++  LS  K   L
Sbjct: 124 MTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           T++  L+ +++     + +I+DV I  LR+K+        YI+T+ G GY L E 
Sbjct: 184 TRDQLLSAVWNYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEEP 238


>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
 gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock1-4]
 gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides Rock3-17]
 gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus pseudomycoides DSM 12442]
          Length = 247

 Score =  300 bits (769), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 17  KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 77  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 196 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 247


>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
 gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
 gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
 gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1293]
 gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 239

 Score =  299 bits (768), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 237

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV G L +  DA  V+ +G  I LT +E++++  L+      +T+E 
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR N + E+
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237


>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
          Length = 234

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 127/232 (54%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIR-KNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 129/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE   +       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+  +L +  +      +G ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   DE
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEEPKGDE 238


>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
 gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
           B]
 gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Vollum]
 gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Australia 94]
 gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
 gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus G9241]
 gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
           Sterne]
 gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis str. Al Hakam]
 gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
 gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
 gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
 gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
 gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
 gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
 gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
 gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
 gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
 gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
 gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
 gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
 gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
 gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
           684]
 gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BGSC 6E1]
 gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 4342]
 gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST26]
 gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 95/8201]
 gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-42]
 gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar tochigiensis BGSC
           4Y1]
 gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar andalousiensis BGSC
           4AW1]
 gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
 gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 239

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
 gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
          Length = 236

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 237

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 130/236 (55%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV G L +  DA  V+ +G  I LT +E++++  L+      +T+E 
Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR N + E+
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLR-NPEQES 237


>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 223

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +A  I+  L+ ENF V +   GE+G+ + +   +D I++D+ L    G 
Sbjct: 1   MKILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  +++TPV  L+   S+ED V GL SG+DDY++KPF   EL+AR++A+VRR  
Sbjct: 61  TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V      I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+      K  I T+ G GYVL+E+
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDKDYS-KKLIHTIRGVGYVLKED 223


>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 274

 Score =  299 bits (768), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ +A  +   L    F V +   G   +EL    + D +ILD  L  + G E
Sbjct: 33  RILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDGVE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR   +S PV +++ + + +D++ GL+ GADDY++KPF+  ELV R+++++RRS  
Sbjct: 93  VCRRLRQT-MSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRRSIK 151

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L ++  ++TV   G  + LT +E+ ++  +  R N   ++E  +  ++
Sbjct: 152 EFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELIKAVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++  + V + +LR+K+         ++TVWG GY  
Sbjct: 212 GWDF-GDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGYRF 252


>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + VY    GE+ +E     + D I+LDL L  + G E
Sbjct: 6   KILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 66  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  +A S +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  
Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ ++    NY+ T  G GY LR   ++
Sbjct: 185 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYLRNPEQE 237


>gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 236

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 205/236 (86%), Positives = 219/236 (92%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD ALA+SIELMLKSENFNVYVT+LGEDG++L K Y++D I+LDL L DI GF
Sbjct: 1   MRVLLIEDDSALANSIELMLKSENFNVYVTNLGEDGVDLGKIYDYDIILLDLNLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+ISTPVCILSGMSSIEDKVRGL  GADDYISKP NK+ELVARI AIVRRSR
Sbjct: 61  EVLRTLRMARISTPVCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD
Sbjct: 121 GHAQSVIATGDLVVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           GRDEPEVKIIDVFICKLRKKLSNAA GKNYIETVWGRGYVLRE+ K+ TCEYLETA
Sbjct: 181 GRDEPEVKIIDVFICKLRKKLSNAADGKNYIETVWGRGYVLRESDKNATCEYLETA 236


>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
 gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +   +   G + +++ K      I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +   STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 65  VCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    V GD+S++ D   V   G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 125 AIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  +R+K+ +      YIET+ G GY  
Sbjct: 185 WGYEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRF 227


>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 3502]
 gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. ATCC 19397]
 gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
           [Clostridium botulinum A str. Hall]
 gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 232

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++ ++N      G + + + K  + D I+LDL L  + G+E
Sbjct: 5   KILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGYE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +TP+ +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     + G++ V+ +  ++   G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      +IET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRF 228


>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEEPKMNE 240


>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 236

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V+    G + +E  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236


>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 236

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 129/226 (57%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +A  + L L+   F V     G + +E+ K    D ++LDL L  I G+EV
Sbjct: 10  VLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    PV +L+    ++DK++G + GADDY+ KPF+ +EL+AR++A++RR+   
Sbjct: 70  CRQIR-SNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL+++L++  VEV G ++ LT +E +++  L+       T+E  L  ++   
Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWGFE 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAK 226
                + +DV + +LR+KL        +I+TVWG GY L   E+A 
Sbjct: 189 FPGNTRTVDVHVNRLREKLDGLPKS-WHIKTVWGVGYKLVVGEDAP 233


>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
 gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1271]
          Length = 239

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
 gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-3]
 gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-28]
 gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-29]
 gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-18]
          Length = 239

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I+  DL +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 239

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I+  +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 239

 Score =  299 bits (767), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKVDE 239


>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 130/235 (55%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++++   ++  L    F     + G+   +L     FD I+LDL L ++ G E
Sbjct: 4   RILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V ++LR  K+STP+ +L+      DKV GL+ GADDY++KPF+  E+VAR+RAI+RRS  
Sbjct: 64  VCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSAV 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q        S ++ GD+ +  +   + +    + LT KE++++  L+      LT++ 
Sbjct: 124 PKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            LN +++     + +I+DV I  LR+K+        YI+TV G GY L    + E
Sbjct: 184 LLNAVWNYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEMPLRHE 238


>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 273

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  ++  L  E F V     G++ ++       D I+LDL L    G E
Sbjct: 42  KILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTDGIE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR R 
Sbjct: 102 ICRKVRE-KYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H +S    GD      L+++  +  V      + LT +E++++  ++   N  LT+E  L
Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV I +LR+K+        YI T  G GY +R+   D
Sbjct: 221 QSVWGYDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGYTMRDPGTD 272


>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
 gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
 gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
 gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
 gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
 gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
           TX1322]
 gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
 gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
 gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
           CH188]
 gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
           X98]
 gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
 gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
 gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
 gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 3   KILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 234


>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 230

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  I GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKIDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+  
Sbjct: 65  VCKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 SSTQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 230

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   +++ L+ E + V+  + G + ++     + D I+LDL + +I G E
Sbjct: 3   KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+VARI+A++RR   
Sbjct: 63  VCRQIR-MHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q ++    L +N+   TV++QG  I  T KE +++ LL+       T+E  L 
Sbjct: 122 ISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
            ++      + + +D  I ++RKK+ +A    ++ I+TVWG GY   
Sbjct: 182 KVWGYDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGYKFE 228


>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
          Length = 233

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E + VY    GE+ +   +    D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A      S I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR+  ++
Sbjct: 183 TVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRQTEQE 233


>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 230

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + V  +  GED +   K   FD ++LD+ L  I GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKIDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+ARIRA +RR+  
Sbjct: 65  VCKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +  G L++N +   V+  G  I LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 SSAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 184 WDYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 239

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 232

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  + V     G + +E  K      ++LDL L  + G++
Sbjct: 5   KILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R  +   + PV +++      DK+ GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  VCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRT 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  +       G++ ++     V  +G ++ LT KE++++++L   K   +T++  L+ +
Sbjct: 125 KVDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV +  LR+K+ +      YIET+ G GY  
Sbjct: 185 WGYEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRF 227


>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein phoP
 gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
 gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 240

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           TA208]
          Length = 235

 Score =  299 bits (766), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E ++V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 235


>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
 gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +       G D + + K  + D ++LDL L  + G++
Sbjct: 5   KILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      +T + +++      DKV GL+ GADDYI+KPF+  E+VAR++A++RR 
Sbjct: 65  VCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRRR 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     V G++ ++ +  ++  +G +I LT KE++++E+L   K   +T++  L+ 
Sbjct: 125 TTINIESKSYVLGNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLDT 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I  LRKK+ +      YIET+ G GY  
Sbjct: 185 IWGYEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGYRF 228


>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 234

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +  E D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKT-FDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     S +  GDL+++ DA  V      I LT +E++++  L+      +T+E  
Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYLRNPEQE 234


>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + + V     GE+ + + K   +D I+LDL L  + G +
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-SVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++      +  GDL ++ D++ V +    ++LT KE+ +++LL    N   ++E  LN
Sbjct: 123 PEKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYFQ 228


>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
 gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH621]
 gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST196]
 gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus mycoides DSM 2048]
          Length = 234

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
 gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
           DSM 7]
 gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
           LL3]
          Length = 236

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E ++V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQD 236


>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 230

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L+   F V     G +G +  +  + D IILDL L  + G +
Sbjct: 4   KVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR+ KI+TP+ +L+  S   DK+ GL+ GADDYI+KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       I  GDL +  +      +  ++ LT KE++++  L+      L+++  LN 
Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     + +I+DV I  LR+K+        YI+TV G GY + 
Sbjct: 184 VWNFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGYKME 228


>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
 gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1272]
 gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH1273]
          Length = 235

 Score =  298 bits (765), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 235


>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
 gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
 gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
 gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus ATCC 10876]
 gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus 172560W]
 gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus m1550]
 gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-ST24]
 gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus BDRD-Cer4]
 gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock1-15]
 gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock4-2]
 gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus F65185]
 gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH676]
 gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis Bt407]
 gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar thuringiensis str.
           T01001]
 gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis serovar huazhongensis BGSC
           4BD1]
 gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 200]
 gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus thuringiensis IBL 4222]
 gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 239

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I   +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEEPKGNE 239


>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
 gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
          Length = 236

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E F V+    G + +E  K  E D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+       +  GDL++  DA  V+ +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +V+ +DV + +LR+K+ +     N+I T  G GY L
Sbjct: 183 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227


>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +A  ++   + E F V +   GE+ +   +  +FD +ILD+ L  + GF 
Sbjct: 4   RILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+      DKV GL+ GADDY++KPF+  EL+AR+RAI+RR   
Sbjct: 64  VCREIRRFS-TVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRV 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                SR  A  ++  GD+++NL +  V      + LT +E++++  L        ++E 
Sbjct: 123 AESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREA 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +V+ +DV + +LR+KL   +    YI+T  G GY  +
Sbjct: 183 LLEEVWGYDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGYYFQ 231


>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
          Length = 238

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+ + +D+K +   ++  LK E + V V   GED + L +   +  +ILD+ +  I G 
Sbjct: 4   IRVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRMR-NHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                SR   QSLI    L+++L   TV   G  I LT KE+++++  +       TK  
Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +   +   + V I +LRKK+        +I+TVWG GY   
Sbjct: 183 LFRNAWSDQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKFV 231


>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
 gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Macrococcus caseolyticus JCSC5402]
          Length = 237

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L+   F V     GE+G+      + D ++LDL L  + G E
Sbjct: 4   KVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R  K   P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS+ 
Sbjct: 64  VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+ G L +  +       G  I LT KE++++  L  R+   +T+E  
Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN +++     + +I+DV I  LR+K+        YI+TV G GY L
Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKL 230


>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
 gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 237

 Score =  298 bits (765), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R     TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 64  VARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232


>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
          Length = 240

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 240


>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
 gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus R309803]
          Length = 239

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+ +I TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I+  +L +  +      QG ++ LT KE++++  L+  K+  LT++
Sbjct: 124 QQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   DE
Sbjct: 184 QLLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGDE 239


>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
 gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus MM3]
          Length = 234

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
 gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
          Length = 238

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 5   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R     TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 65  VARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233


>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  298 bits (764), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 124/235 (52%), Gaps = 9/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V V   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRRLR-NKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   H   LI    +S++L   TV   G  + LT KE+Q+++  +       TK  
Sbjct: 123 VLGSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++DG    +   + V I KLRKK+        +I TVWG GY      KDE
Sbjct: 183 LFRNVWDGNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGYKF-AGEKDE 236


>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
 gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
          Length = 236

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 133/234 (56%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V+    G++ +++ +  + D ++LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A        ++ I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +     N+I T  G GY LR   ++
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYLRNPEQE 236


>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
 gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
          Length = 238

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E 
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235


>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 231

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   I+  L+ E + V     G   +E+ K    D +ILD+ L  + G 
Sbjct: 1   MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGL 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV + +R  + +   P+ +LS      DK+ GL+ GADDY+ KPF+  ELVAR++A +RR
Sbjct: 61  EVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120

Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             G     + +I   D+ ++ +   V V+G ++  T KE+++++LL+       T+E  L
Sbjct: 121 LEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELLKLLASNPGKVFTREYLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++      + + +DV I  +R+K+ +      YIETV G GY   E  K
Sbjct: 181 EKIWGYEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRFGEEKK 231


>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 250

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   IE  K +E       FD IILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R      +      D+++N     V V+G  + L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
 gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 236

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++VY    GE+ ++  K  E D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A          S I  GDL+++ +A TV   G RI LT +E++++  L+      +T+E
Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 182 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLR 231


>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
 gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
          Length = 237

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 133/233 (57%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   L++E + +     GE  +++ +  + D +ILDL L  + G E
Sbjct: 6   KILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPKMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + PV +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 66  VCREIRKQS-AVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   ++ IV GDL ++ DA  +   G  I LT +E++++  L+      +T+E  
Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D     +V+ +DV I +LR+K+ +      YI T  G GY+L+   ++
Sbjct: 185 LETVWDYDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLLKNPDQE 237


>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
 gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E 
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235


>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 237

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R     TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 64  VARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 232


>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 235

 Score =  298 bits (764), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+   ++  L+  ++ V     GE  + L    +FD I+LDL L  + G E
Sbjct: 3   RVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ +++  +S  D V GL+ GADDYI+KPF+  E++AR++A++RR   
Sbjct: 63  VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +          +  GDL+++ D   V+     I LT KE++++   + R     ++E
Sbjct: 123 EEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVWSRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      + +++D+ +  LR+K+         ++TV G GY   
Sbjct: 183 QLLEGVWGFDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFE 232


>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 294

 Score =  297 bits (763), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD A+   ++  L  E F V     GE+ + + +    D +ILD+ +  + G E
Sbjct: 73  RILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGLE 132

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR A    PV  L+   +  D+V+GL++GADDY+ KPF  E LVAR+RA++RR + 
Sbjct: 133 VLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQA 192

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL ++    T       IHLT  E++++    L     L K+  L  ++  
Sbjct: 193 ERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWGY 252

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  +++V++ +LR+KL  A G    I TV G GYVLRE
Sbjct: 253 DFGGNANVLEVYVKQLRQKLE-AEGEPRLIHTVRGVGYVLRE 293


>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
 gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
          Length = 237

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ ++L +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      S +  G L+++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 235

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   L+ E ++      GE+ +E    Y+ D I+LDL L    G E
Sbjct: 3   KILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDY++KPF+  EL ARI+A +RRS+ 
Sbjct: 63  VCREIRKTS-SVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + +        + +  G+L+++ DA  V   G  + LT +E++++  LS      +T+E 
Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +       + T  G GY L++N ++
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDNDQE 235


>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
 gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus Rock3-44]
          Length = 238

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   IE  L+   F V     GE  ++       D IILDL L  + G E
Sbjct: 4   RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR+ ++ TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR++ 
Sbjct: 64  VCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTKL 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I   DL +  +      Q  ++ LT KE++++  L+  K   LT++ 
Sbjct: 124 QDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ +++     + +I+DV I  LR K+        YI+T+ G GY L E   +E
Sbjct: 184 LLSAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEEPKGNE 238


>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 236

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F V     G + +E     + D I+LD+ L +  G E
Sbjct: 5   KILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 65  VCREVRKQ-FEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123

Query: 122 HAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +       GDLS++ +A  V+ +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYLRHPEQE 234


>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
          Length = 234

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 132/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E + V+    GE+ +E  +  E D IILDL L  + G E
Sbjct: 3   KILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +A       QS +  GDL+++ DA  V  +G +I LT +E++++  L+      +T+E  
Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYLRNPEQE 234


>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 238

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ ++  +    D I+LDL L  I G E
Sbjct: 5   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R     TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+  
Sbjct: 65  VARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   +  GDL+++ DA TV  +G  I LT +E++++  L+      +T+E
Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR
Sbjct: 184 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLR 233


>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V V   GE+ ++  +    D I+LDL L  I G E
Sbjct: 14  KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  + STP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 74  VAKQVRAKR-STPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 132

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  GDL+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 133 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L    +D
Sbjct: 193 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 245


>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 240

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G+D +E    + FD +ILDL L  +PG  
Sbjct: 10  RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 70  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  G+L++++    V V G  + LT  E++++  LS       ++   +  +
Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E   + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 189 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236


>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQ-SMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + +++   +L +++    VE     + LT +E+++++ L L K    ++EM L  +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +++ +DV I +LR+K+ +       I T  G GY   + 
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDE 228


>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 237

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 129/236 (54%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           IV G L +  DA  V+ +G  I LT +E++++  L+      +T+E 
Sbjct: 123 TATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR N + E+
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLR-NPEQES 237


>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 239

 Score =  297 bits (763), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E + V V   G+  +E+ K    D I+LD+ L  + G E
Sbjct: 5   KILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+      + P+ +L+      D + GL+ GADDYI KPF+  E+VAR++A +R  
Sbjct: 65  VCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRAL 124

Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R         Q   V  +L+V  +     +   ++ LT KE++++ L++  +    T+E+
Sbjct: 125 RILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTREV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++      + + +DV I  LR+KL + +   +YIETV G GY   E
Sbjct: 185 LLEKVWGYEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGYRFVE 234


>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
 gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  297 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+ +   + L L++E F     + G   +E  +   FD IILDL +  + G+
Sbjct: 1   MRILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR      P+ +L+      D++ G   GADDYI KPF+  EL AR++A++RR  
Sbjct: 61  TVCKVLRKE-TQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLD 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    + LI     ++N   + + V+G  + LT KE+ ++ +L+       T++  L+ +
Sbjct: 120 GETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     + + +D  I +LR K  +  G  ++I+TV G GY    N +
Sbjct: 180 WDFDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYNGR 227


>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 230

 Score =  297 bits (763), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   I+  L+ E + V  +  GED +   K   +D ++LD+ L  I GF 
Sbjct: 5   HILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKIDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +++  +   DKV GL+ GADDYI+KPF   EL+AR+RA +RR   
Sbjct: 65  VCKKVREFS-DVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTAL 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S      ++  G L++N +   V+  G  + LT +EY++++ L  +K    ++E  L  +
Sbjct: 124 SSVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +V+ +DV + +LR+K+ +      +I T  G GY    N
Sbjct: 184 WGYEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229


>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 263

 Score =  297 bits (762), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ++   +   L  E ++V      E+ +++      D  I+D+ L  + GFE
Sbjct: 29  KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R LR      +TPV  LS      DKV GL+ GADDYI+KPF+  E++ARI+A+ RR 
Sbjct: 89  LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  AQ        IV   L ++++   V+V   ++ LT  E++++  L+  +    ++++
Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKEE 263


>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
 gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L+ E + V+    G + +E+ +  + D I+LD+ L +  G E
Sbjct: 4   KILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q       + I  G L +  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQD 235


>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQ-SMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + ++I   +L +++    VE     I LT +E++++  L L K    ++EM L  +
Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      +++ +DV I +LR+K+ +       I T  G GY   +  +
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDEKQ 230


>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 239

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 68/236 (28%), Positives = 128/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ +E  +    D I+LD+ L  + G +
Sbjct: 4   KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR+  
Sbjct: 64  VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I+ G+L +  +      +  ++ LT KE++++  L   K   LT++
Sbjct: 124 SSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   +E
Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 250

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   +E  K +E        D +ILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R        ++   D+++N     V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++  +     D G D I+  K    + I+LD+ L  + G++
Sbjct: 5   KILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R      STP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++AI+RR+
Sbjct: 65  VCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +       G +++N +   +   G ++ LT KE++++ELL   +   +T++  L+ +
Sbjct: 125 TAKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I  LR+K+        YIET+ G GY  
Sbjct: 185 WGYEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGYRF 227


>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
 gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Lysinibacillus sphaericus C3-41]
          Length = 238

 Score =  297 bits (762), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++A  ++  L+   + V     G++G+E     + + I+LDL L  + G EV
Sbjct: 5   ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  +++TP+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR   +
Sbjct: 65  CKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFTQN 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +   G L V  +   V +Q   +  T KE++++  L   KN  LT++ 
Sbjct: 125 VVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++      + +I+DV I  LR K+   +    +I+T+ G GY   E 
Sbjct: 185 LLSAVWKYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEEP 235


>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 235

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V     GE+G+E  +  + D IILDL L  I G E
Sbjct: 4   KVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVRAKH-NTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I  G L+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 ANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229


>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 235

 Score =  297 bits (762), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ IL+   S  DKV GL+ GADDY++KPF+  EL+AR+RA +RR   
Sbjct: 64  VCREVR-KKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHSQ 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  + I+ G L +  DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 123 TVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   ++
Sbjct: 183 LQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 235


>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 244

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 19/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  LA +I   L+   ++V     G   ++  +    D I+LD+ L  + G E
Sbjct: 4   KILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMDGLE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +  TP+ +L+      DKV GL+ GADDY++KPF + EL+AR+RA++RRS
Sbjct: 64  VCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRRS 123

Query: 120 -----------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                            R  A   +V G L ++L  + V  +G  I L  K+++++  L 
Sbjct: 124 DYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYLV 183

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + T LT++  L++++      + + +DV +  LR+KL         I+TV G GYV R
Sbjct: 184 RNRGTVLTRDQLLHNVWGYDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYVFR 243


>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 235

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ + + V     G + IE+   +E D I+LD+ L    G E
Sbjct: 5   KILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR++ 
Sbjct: 65  VCREVR-KKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  G L +  DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++      +V+ +DV + +LR+K+ +      +I T  G GY LR NA  E
Sbjct: 184 AVWGYDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYLR-NADQE 234


>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 253

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54
           RIL++ED++ +   + + L+ E + V     G   +E  K ++        D +ILDL L
Sbjct: 23  RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 83  PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 142

Query: 115 IVRRSRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R        ++   D+++N     V V+G  ++L+ KE++++EL         ++
Sbjct: 143 LLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWSR 202

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 203 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 252


>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
 gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
           29176]
          Length = 229

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ +E  K  E+D ++LD+ L  + GF+
Sbjct: 4   KILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      ++V G++ ++ + + V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LIWGYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQ 228


>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 232

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA ++   L+ E ++V V   G  G++  +  + D ++LD+ L  + GF V
Sbjct: 4   VLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D++ GL+ GADDY+ KPF+  E +AR+RAI+RRS   
Sbjct: 64  CRILRQES-DVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S+    +  G + V+  ++     G  ++L  KE+ ++  L   +   LT+++ L  +
Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      + + +DV I  LR+K+    G   YI+TV G GY     + D
Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFEPPSDD 231


>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 233

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++A+   ++  L  E + V   D GED +      ++D IILD+ L    G 
Sbjct: 1   MRILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R   ISTP+ +L+ + S EDKV GL +GADDY+ KPF+  EL+ARIRAI+RR  
Sbjct: 61  KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     VE  G RI LT +EY ++E L    N  L++   + H+++
Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E  I+DV+I  LRKK+ +       I TV G GY++ E
Sbjct: 181 LDFYTESNIVDVYIRYLRKKI-DNGFENKLIHTVHGVGYMIGE 222


>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 230

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ L  + GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  SS  DKV GL+ GADDY+SKPF  +EL+AR+RA++RRS+ 
Sbjct: 65  LCRLIRAES-SVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     L ++      +   V   G  +  + KE+ ++  +   +    ++E  L 
Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFEE 230


>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
 gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
           B1551]
          Length = 235

 Score =  297 bits (761), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V+    G + +E  +  + + I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        + I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 123 VAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235


>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 235

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L+ E + V V   GE+ ++  +    D I+LDL L  I G E
Sbjct: 4   KVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  + STP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKQVRAKR-STPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDA 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  GDL+++ DA TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 TVSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L    +D
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPNQD 235


>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 231

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   +   L  E F V V   G   +E+ + +  D IILDL L  + GF V
Sbjct: 4   VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              LR        PV +LS   + EDKVRGL  GADDY++KPF+  EL AR++A +RR +
Sbjct: 64  CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQ 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+   +V G L ++ +   V  + H  +L  KE++++  L+       ++E  L+ ++
Sbjct: 124 SQAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                   + +DV +  +R+KL    G    IETV G GY  RE A+ 
Sbjct: 184 GYDYLGGPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRFREPAQW 231


>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+  L+ E +  Y    GE+ +++ K    D IILD+ L  + GF 
Sbjct: 4   RILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   ++ P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VLRTLRQ-SMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + +++   +L +++    VE     + LT +E+++++ L L K    ++EM L  +
Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +++ +DV I +LR+K+ +       I T  G GY   + 
Sbjct: 183 WGYEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYFSDE 228


>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
 gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Bacillus cereus AH603]
          Length = 234

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E F + +   G++ IE     + D ++LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREIRKSS-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + +V G + +N +A +V  +   I LT +E++++  L+      +T+E  L
Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +       I T  G GY LR+  ++
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYLRDPEQE 234


>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
 gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
          Length = 235

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  L  +++  L  E+++V +   GE  +E+ +  + D I+LD+ L  + GFE
Sbjct: 4   KVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR   +++P+ +L+  +   DK+ GL+ GADDY++KPF+  EL+AR+RA++RR++ 
Sbjct: 64  VCRILRKE-MNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GD+ V++D     +    + L  KE+ ++  L+  K    ++E  L 
Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I  LR+K+ N  G   Y+ TV G GY L 
Sbjct: 183 KVWGYDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKLE 228


>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
 gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 227

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+ +   + L L++E +++   D G   +E  +   FD +ILDL +  + G+
Sbjct: 1   MKILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR      P+ +L+      D+V G   GADDY+ KPF+  EL AR++A++RR  
Sbjct: 61  TVCKVLRKE-TKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLE 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    + LI     ++N   + V V    + LT KE+ ++ +L+   +   T++  LN +
Sbjct: 120 GEPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     + + +D  I +LR KL +  G  ++I+TV G GY   
Sbjct: 180 WEYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFE 223


>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 236

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V     GE+ ++  +    D I+LD+ L    G E
Sbjct: 5   RILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR+RA +RR   
Sbjct: 65  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHTQ 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  + I+ G L +  DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 124 IVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     ++I T  G GY LR   ++
Sbjct: 184 LQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYLRNPEQE 236


>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 250

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RIL++ED++ +   + L L+ E + +     G   +E  K          FD ++LDL L
Sbjct: 20  RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    + P+ +LS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI      ++S+N     V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249


>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
 gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
          Length = 235

 Score =  296 bits (760), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  ++  L+ E + V+    G + +E  +  + + I+LD+ L    G E
Sbjct: 4   RILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        + I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 123 VAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRSPEQE 235


>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E F+    + GE  IEL    + D I+LD+ L  + GF 
Sbjct: 4   KILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ISTP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRE-SISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+      + +  GDL ++++   V      I LT +E+++++ L+L+     ++E  L
Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      +V+ +DV + ++R+K+        YI T  G GY   +
Sbjct: 183 EKVWGYEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGYYFNK 230


>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
 gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
           [Dehalococcoides sp. VS]
          Length = 256

 Score =  296 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   +   + ++   +ILD+ L  I GFE
Sbjct: 31  KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  SS  DKV GL++GADDY+SKPF   EL+AR++A++RRS+ 
Sbjct: 91  LCRLIRTES-SVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  GDL + ++   V   G  +  + KE+ +   +   +    ++E  L 
Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 210 KVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256


>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
 gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
          Length = 249

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ +E  +  E+D ++LD+ L  + GF+
Sbjct: 25  KILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKLDGFQ 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 85  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +IV G + ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN 
Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 204 IWGYDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYFQ 248


>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
          Length = 237

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S         +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
 gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 235

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + L    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q           I  GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235


>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
 gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 228

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I   L+ E   V     GE+ +E  K  E+D ++LD+ L  + GF+
Sbjct: 4   RILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +++ G L ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN 
Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +DV I +LR+K+        Y+ T WG GY  ++
Sbjct: 183 VWGYDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYFQD 228


>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
 gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
           1988]
 gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
           R2-561]
 gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
 gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
           J2-003]
 gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
 gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
 gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
 gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
 gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 237

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S         +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
           D344SRF]
 gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 244

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 13  KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 73  VAREVRKT-YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 132 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR   ++
Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 244


>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 231

 Score =  296 bits (759), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA ++   L+ E + V V   G  G+E  +    D I+LD+ L  + GF V
Sbjct: 4   ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D++ GL+ GADDYISKPF+  E +ARIRAI+RRS   
Sbjct: 64  CRILRQES-DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQ 122

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++    ++  G L V+  ++        + L  KE+ ++  L   +   L++++ L  +
Sbjct: 123 PRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV I  LR+K+        YI+TV G GY     
Sbjct: 183 WGPDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGYRFEPP 228


>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
 gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
 gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium E1679]
 gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKT-YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 122 AAKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 234


>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 237

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L +E F V     GE  +   +   +D +ILD+ L  I G+E
Sbjct: 9   RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      D+V GL+ GADDYI KPF+  E+VAR++A++RR+R 
Sbjct: 69  VCREIRKIS-DVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     IV G++ +  +A+TV V G  + LT KE+ ++  L+        +E  L+ ++
Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  + +LR+KL+ A G    I TVWG GY L 
Sbjct: 188 GYDFYGDSRTVDTHVARLREKLNQA-GAPPLIATVWGVGYKLE 229


>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 246

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE---LCKFYEFDAIILDLGLTDIP 58
           R+L++EDD ++  +++  L++E F+V     G + +    +      D I+LDL L  + 
Sbjct: 17  RLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLG 76

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V R LR   I+TP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 77  GLDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRR 136

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++   Q      +++   +L +  +   V   G  + L+ KEY+++EL         +++
Sbjct: 137 TQQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRD 196

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++      + K +DV I  LR+K+ +      +I TV G GY  
Sbjct: 197 QLLEKVWGIDFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGYRF 245


>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
 gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
          Length = 240

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ L   I   LK+E + V     GE+ +EL +  +FD IILDL +  I G +
Sbjct: 10  KILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDGLQ 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R    + P+ +L+  S   DK+ G + GADDYI+KPFN  EL AR+RA++RRS  
Sbjct: 70  ACMRIREFS-NVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSGA 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  A   +  G + ++ + ++    G  + LT KE+ ++ELL        ++E  LN 
Sbjct: 129 AVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLNV 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      + + +DV + +LR+KL        YI T WG GY L  + +
Sbjct: 189 VWGYEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYLSSHPE 237


>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 233

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 133/231 (57%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E + V V + G+  IEL +  + + I+LD+ L    G E
Sbjct: 4   KILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  + + PV +L+   +  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VLREVRKTQ-NIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++      IV GDL V+ DA  V  +G  I LT +E++++  L+      +T+E  L 
Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      +V+ +DV + +LR+K+        +I T  G GY LR   ++
Sbjct: 183 TVWGYDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYLRNPEQE 233


>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 224

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 132/224 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   LK + + V V + GE G +L + + +D I+LD+ L  + G 
Sbjct: 1   MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++    LS+N +   V      +HLT KEY ++EL     +  L++ M L+HL+ 
Sbjct: 121 TSSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL N     ++IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224


>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 239

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +   L+ E + V     G  G+EL +    D I+LD+ L  + G E
Sbjct: 3   KILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNGLE 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +    A  + PV +LS  +   D+V GL+ GADDYI+KPF+  ELVARI+A +RR 
Sbjct: 63  VCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRRI 122

Query: 120 RGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +              +  G L ++ +   V V G ++ LT KE++++  L+ +     ++
Sbjct: 123 QKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      + + +DV I  +R+KL   +     IETV G GY  RE
Sbjct: 183 EQLLEQVWGYDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCFRE 234


>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 233

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE+ +     +  D IILDL L  I G++
Sbjct: 6   KILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR+RA++RR   
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   ++  +   DL+VNL    V   G ++ +  KE +++  L+   N   T+E  L
Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPHWS--IATVWGIGYKFE 229


>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K +TP+ +LS  S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIR-SKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+              L++NL   +V   GH + +  KE +++  L+   N   T+E 
Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWN--ISTVWGIGYKFE 231


>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
 gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
 gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
 gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 241

 Score =  296 bits (758), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 10  KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 231

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   +   L+   F V     G   +E  + +  D +ILD+ L  + G  V
Sbjct: 6   ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    +  + +L+  +   D+V GL++GADDY++KPF   ELVAR+RA++RR R  
Sbjct: 66  CRRLRTFSDAY-ILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRHT 124

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SLI  G L ++  A TV + G  + LT  EY ++ +++       ++   L+ +
Sbjct: 125 EVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDRI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++V I  LRKKL +      YI TV G GY   E
Sbjct: 185 WGHDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGYRFGE 229


>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 234

 Score =  296 bits (758), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+ ++ + GE  +     +  + I+LDL L  + G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRQ-KSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +           +   DL++NL   +V   G ++ +  KE +++  L+   N   T+E  
Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 LDHIWGYEYIGDTRTVDVHIKRLREKIKDHPSWA--LSTVWGIGYKFE 230


>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
          Length = 236

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + VY    GE+ I++ +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K   P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR + 
Sbjct: 64  VCRELR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + IV G L ++ DA  V  +   I LT +E++++  L       +T+E 
Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYLRNPEQE 236


>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 239

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           +L+++D+ ++   +E       F+V   D G    E  K    ++D ++LDL L  + G 
Sbjct: 4   VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ +L+      D V GL+ GADDY++KPF+  ELVAR RA++RR+ 
Sbjct: 64  EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123

Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +         ++  G++ +++    V V+G  +  T KE+++++         L+++
Sbjct: 124 SREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++      + +I+DV +  LR+K+ + +    YI TV G GY   E
Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTE 234


>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
          Length = 244

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 13  KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 73  VAREVRKT-YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 132 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR   ++
Sbjct: 192 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 244


>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I L L+ E + V     G + ++  K      ++LD+ L  I G++
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRKVS-SIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEH 124

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +     +L +N    T+ ++G+ I L  KE +++  L+   N   T+E  L H++
Sbjct: 125 KEVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV + ++R+K+    G    ++TVWG GY   
Sbjct: 185 GFDFYGDSRTVDVHVKRVREKIDLD-GQPWQLKTVWGVGYKFE 226


>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 237

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 132/235 (56%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++VY    GE+ ++  +    D I+LDL L  + G E
Sbjct: 4   KILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VARQVRKSH-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +QS          I  GDL+++ +A  V  +G +I LT +E++++  L+      +T+E
Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 183 HLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYLRNPEQE 237


>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
          Length = 234

 Score =  295 bits (757), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  ++  L  E ++VY    GE+ +E     E D I+LDL L  + G E
Sbjct: 3   KVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKT-YDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + +  GDL+++ +A  V  +G  I LT +E++++  L+      +T+E  
Sbjct: 122 ATREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +     NY+ T  G GY LR   ++
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYLRNPEQE 234


>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K ++  +   L+ E + V V   GEDG+        D ++LD+ L  + GF+V
Sbjct: 5   ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLDGFQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +  S P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A +RR+   
Sbjct: 65  CRKIRASS-SVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTESG 123

Query: 123 AQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + S +     TG + ++     V      I LT +E+++++ L+L+     T+E  L  +
Sbjct: 124 SGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +++ +DV + +LR+K+ + +    YI T  G GY  R
Sbjct: 184 WGYEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYFR 227


>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 233

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L   ++  L +E + V     GE+ ++  +    D ++LDL L  + G E
Sbjct: 4   RILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    +  V +L+  SS  D+V GL+ GADDY++KPF+  ELVAR+RA +RR   
Sbjct: 64  VCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQL 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++ +    L ++   + V   G  +HLT +E++++  L+   +   T+   L  
Sbjct: 124 DRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLRE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        + +D  I +LR K+    G   YI TVWG GY  + + +
Sbjct: 184 VWGIDYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGYKFQSSEE 232


>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 227

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+     L L+ E F V     GE  +E       D +ILD+ L    G+ V
Sbjct: 6   ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR++A++RRS   
Sbjct: 66  CREIRRQ-TAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSNAP 124

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A       +    L+++ +A+ VEV+G  I LT KE++++  L+ R     ++E  L  +
Sbjct: 125 AGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLAGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + + +D  I +LR+KL     G+NY++TVWG GY   
Sbjct: 185 WDYEYPGDTRTVDTHIKRLREKLR--GTGRNYLKTVWGLGYKFE 226


>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 236

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  LK E + V     G D ++  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           I  G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 183 LLQTVWGYDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYLRNPEQE 236


>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
 gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus oris PB013-T2-3]
          Length = 235

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE+ +E  +  + D IILDL L  + G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREAT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GD++++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 AQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229


>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 230

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   +E+ +    + +ILD+ L    G++
Sbjct: 8   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV +LS      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 68  VCREIRKIS-NIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 126

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  IV  +L +N    T++V G  +    KE +++  L+   N   T+E  +  ++
Sbjct: 127 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL ++ G    ++TVWG GY   
Sbjct: 187 GYDFYGDSRTVDVHIKRLREKL-DSEGQNWQLKTVWGVGYKFE 228


>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +   K  E+D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    + PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 64  VCQQIREFS-NMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   A   IV GDL ++ +++ V +    I+LT KE+ ++ELL L  N   ++E  LN
Sbjct: 123 KASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFK 228


>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   +E+ +    + +ILD+ L    G++
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV +LS      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRKIS-NIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEH 124

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  IV  +L +N    T++V G  +    KE +++  L+   N   T+E  +  ++
Sbjct: 125 KDSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL ++ G    ++TVWG GY   
Sbjct: 185 GYDFYGDSRTVDVHIKRLREKL-DSEGQNWQLKTVWGVGYKFE 226


>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
 gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
          Length = 233

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++++   +E+    E +       G++G +      +D +I+D  L  + G 
Sbjct: 1   MKILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWMLPVMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TLCRKIRELS-TVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQ 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S+    + I +    ++ D + V  +G  ++ LT KE+ ++           ++E  
Sbjct: 120 ADSSKQEEANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++  +   + + +DV I +LRKK+      + +I TVWG GY   E+
Sbjct: 180 LDRVWGYQFYGDERTVDVHIKRLRKKIGTT--SQPFIHTVWGIGYKFDES 227


>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
 gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria ivanovii FSL F6-596]
          Length = 236

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 132/231 (57%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G+ G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          +++I+ GDL +  ++  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR KL        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKME 233


>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 235

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +  +L+ E F+V V   G   I+  + Y  D I+LDL L  I G E
Sbjct: 3   KILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDGLE 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR        PV +++  S   DK+ GL+ GADDY++KPF+  ELVAR++A +RR 
Sbjct: 63  VCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRRR 122

Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            G         +  I  G L V      V + G ++ LT KEY+++ LL        +++
Sbjct: 123 TGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSRD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++      + + +DV I  LR+K+        +IETV G GY  +E
Sbjct: 183 FLLSTIWGFDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRFKE 233


>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium botulinum H04402 065]
          Length = 228

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R    + P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKDS-TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV I +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGYKFE 226


>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 235

 Score =  295 bits (756), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE  +E  +    D IILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL+++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229


>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 129/247 (52%), Gaps = 18/247 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  +A  + L L+   + V   + G  GIEL    + D +ILDL L  + G 
Sbjct: 2   MKILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R    +TP+ +L+     ED++ GL SGADDY+ KPF+  E+++R++AI+RR+ 
Sbjct: 62  EVCRRIRTW-ANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAG 120

Query: 120 ----------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                           +  +   +  G L +N+ A+ V V    + LT KE+ ++ L++ 
Sbjct: 121 LYSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAK 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   T+E  LN ++      + + +DV I  LRKKL +    +  I+TVWG GY    
Sbjct: 181 APDRVFTRETLLNQVWGYSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGYKFVP 240

Query: 224 NAKDETC 230
              + + 
Sbjct: 241 PGMESSS 247


>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 236

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  ++  L+   F+V +   G+ G++       D I+LDL L  + G EV
Sbjct: 5   VLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR  +I+ P+ +L+      DKV GL+ GADDY++KPF+  E++AR++A++RR  G 
Sbjct: 65  CKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSGP 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ +   G+L V  +     +    +  T KE++++  L   KN  LT++  
Sbjct: 125 VVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV I  LR K+   +    YI+T+ G GY   E  K
Sbjct: 185 LSAVWNYDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFEEPKK 236


>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 224

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K +A  ++  L+  ++ V +   G DG+ L     +D I++D+ L  I G 
Sbjct: 1   MKILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TP   L+ + S+ DKV GL  GADDYI KPF+  EL+ARIRA +RR  
Sbjct: 61  EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S + TG+++++   + V     +I LT  E+ ++E         LT+ M   H++D
Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E    +IDV I +LR KL      K  I TV   GYVL E
Sbjct: 181 YNYESFSNVIDVHISRLRNKLEKDF-DKGIIHTVRRVGYVLEE 222


>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ +E  +  E+D ++LD+ L  + GF+
Sbjct: 4   KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       +V G++ ++ + + V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LIWGYDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYFQ 228


>gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 234

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   D   E+LETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGAAEFLETA 234


>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 238

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L++  + V V   GE+ ++     + D ++LD+ L  + G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQQ 123

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +    ++ G + +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 239

 Score =  294 bits (755), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           +L+++D+ ++   +E       F+V   D G    E  K    ++D ++LDL L  + G 
Sbjct: 4   VLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ +L+      D V GL+ GADDY++KPF+  ELVAR RA++RR+ 
Sbjct: 64  EVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRTE 123

Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++  G++ +++    V V+G  +  T KE+++++         L+++
Sbjct: 124 SREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L+ ++      + +I+DV +  LR+K+ + +    YI TV G GY   E
Sbjct: 184 QLLDRVWGYSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKFTE 234


>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 256

 Score =  294 bits (755), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+++L   +   L+       +   G + +   +      IILD+ L D  GF +
Sbjct: 34  VLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFTL 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   I TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVARI+A++RR+ G 
Sbjct: 94  CRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGR 153

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q     G + ++     V   G R+ LT  E++++  L+       T++  L+ ++   
Sbjct: 154 RQQ---IGPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGEE 210

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + +DV +  LR+KL        +I TV G GY L
Sbjct: 211 AFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKL 249


>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 240

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA+++   L+ E +   +   GE+G+   +   +D IILDL L  + G 
Sbjct: 15  MRILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGM 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  +I TPV +L+   ++ DKVRGL +GADDY++KPF   EL+AR+RA++RR  
Sbjct: 75  EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +++  GDL ++  ++ V      I+LT KEY ++E L    N  LT+     H++D
Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   I+DV+I  LR+K+ +       + T+ G GY LRE  K
Sbjct: 195 YDFSGMSNIVDVYIRYLRRKIDDNF-EPKLLYTIRGSGYCLREPGK 239


>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  LK E ++      GE+ + L      D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ISTP+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRQ-SISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q        +   GDL++++D   ++     I LT +E+++++ L+ ++ T  ++E  
Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++      +V+ +DV + ++R+KL        YI T  G GY   +
Sbjct: 183 LEKVWGYEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGYYFNK 231


>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 237

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   ++  L+ E + V     G+  +      +++ +ILD+ L D  G E
Sbjct: 6   RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+   S  DKV GL+ GADDYI+KPF   EL+AR++A +RR   
Sbjct: 66  VCRTIREI-TNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ ++  GDL ++ D   V  +   + LT  E++++ LL+       TK+  
Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            N ++          + V I +LR K+ +      +IETVWG GY    +  D
Sbjct: 185 FNKVWGDDYLEADNNVMVHIRRLRTKIEDDPKNPEFIETVWGIGYRFAGDEND 237


>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 238

 Score =  294 bits (754), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L+ E + V V   GE  ++  +    D +ILDL L  I G E
Sbjct: 4   KILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREIRKKH-DMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           I  GDL+++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+ 
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYLRNPDSDQA 238


>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 241

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E + V V   GE+ +E  +  + D IILDL L  I G E
Sbjct: 10  KILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    +TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + I  GDL ++ +A TV  +G  I+LT +E++++  L+      + +E  
Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY L
Sbjct: 189 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235


>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 238

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 9/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V     GE+G+        D +ILDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 63  VCREIRKTS-HVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQL 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + IV G L+++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 APAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY ++   +++  
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIKTPDQEKEA 238


>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
 gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ + H + + L+ E + V     G + +E  +  ++  +I+DL + +I G++V
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+      D+V G + GADDY+ KPF+ +ELVAR++A++RRSRG+
Sbjct: 64  CRDVRERS-DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S ++ G L +  D   V +   +I  T +E++++  L+   +   ++E  +  ++
Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 + + +D  + K+R+KL      ++ + TVWG GY     A +E
Sbjct: 183 GYDFYGDARTVDTHVKKIREKL-ADPKVRSMLATVWGVGYKFDPEAANE 230


>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 228

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+ +L   +   L+ E F V     GE  +E    +E   IILD+ L  + G E
Sbjct: 7   RILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDGTE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+      D+V GL+ GADDY++KPF   ELVAR+RAI+RR++ 
Sbjct: 67  VCRRIRAQS-DVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +    L +NL ++ V V G  + LT  E++++  L+       ++   L  +
Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +  + + +DV I  LR+K+        +I T  G GYV R
Sbjct: 186 WG-DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGYVFR 228


>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA ++   L+ E + V +   G  G++  +  + D ++LD+ L  + GF V
Sbjct: 4   VLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D++ GL+ GADDYISKPF+  E +AR+RAI+RRS   
Sbjct: 64  CRILRQES-DVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S+    +  G + V+  ++     G  ++L  KE+ ++  L   +   LT+++ L  +
Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + +DV I  LR+K+        YI+TV G GY      
Sbjct: 183 WGQDFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGYRFEPPV 229


>gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4]
 gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4]
          Length = 233

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 207/236 (87%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    ++ EY+ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DSAEYMETA 233


>gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
 gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3]
          Length = 234

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 2/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   D   E+LETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLRE--PDGATEFLETA 234


>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 232

 Score =  294 bits (754), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED + +   I + L+  +++V     G +G+ L     FD IILD+ L  + G +
Sbjct: 4   RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR   I TP+ +L+   S  D+V GL++GADDY++KPF+  EL AR++A +RR   
Sbjct: 64  VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   A   +  G+L ++   + + +    I LT KE+ ++  ++       ++E  
Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++  +       ++  I +LR KL        Y+ TVWG GY  
Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230


>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
 gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 128/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R    + P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKDS-TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L+V++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV I +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLE---GGPNWEIETVWGVGYKFE 226


>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
           [Pelobacter carbinolicus DSM 2380]
          Length = 223

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +A  I+  L+ E+F V V   GE+G+ L +   +D I++DL L    G 
Sbjct: 1   MRVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR   ++TPV  L+   ++ED V GL SG+DDY++KPF   EL+AR++A++RRS 
Sbjct: 61  EVIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++  +  V      I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 KDRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+      K  I TV G GYVL+E
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKVDRDF-DKKLIHTVRGVGYVLKE 222


>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +A  I++ L++  ++  V   G++  E    Y+ D ++LD+ L  I G +
Sbjct: 7   KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R    + P+ +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKDS-TIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLE--GGSNWEIETVWGVGYKFE 226


>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 282

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +A  ++  L+ E + V     G   +EL    + D I+LDL L    G +
Sbjct: 47  RILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVKDGMD 106

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K++TP+ +L+   +  DKV GL+ GADDY++KPF   EL+AR++A +RR   
Sbjct: 107 VCREVR-GKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRRQIK 165

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I    L ++ D   V   G  + LT +E+++I  L+   +  +T+E
Sbjct: 166 SEAAPEVAKEEPQGIRLDTLFIDTDMYVVYKDGDPLDLTHREFELIYYLAKHPSKVMTRE 225

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV I +LR+K+        YI T  G GY++R
Sbjct: 226 HLLQAVWGYEYFGDVRTVDVTIRRLREKIETDPSKPEYIVTRRGLGYMMR 275


>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
 gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
           MPA1U2]
          Length = 226

 Score =  294 bits (753), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+ +++  +EL    E  N      G +G E  K    D +ILD  L  + G 
Sbjct: 1   MRILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   S  D+V G + GADDY++KPF+   L+ARI+A+ RR +
Sbjct: 61  ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  LI T   +VN + + +   G  +  LT KE+ ++           ++E  L  
Sbjct: 121 KPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  +   + + +DV I +LRKK+    GG     TVWG GY   E+
Sbjct: 181 VWGYQFYGDERTVDVHIKRLRKKID---GGDKLFHTVWGVGYKFEEH 224


>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
           sensing [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   L+   F V   D GEDG+ + +  E D +ILD+ L  I GFE
Sbjct: 7   RILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR      PV +L+      D+V G + GADDY++KPF+  EL  R++AI+RR+R 
Sbjct: 67  VLRALRR-HSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+      +V G L++N  +  V   G R+ LT  E+Q++ +L+       T++  ++ 
Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +       +V+ +DV I  LR KL         IETV G GY  
Sbjct: 186 VMGPDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGYRF 229


>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
 gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  294 bits (753), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L+ E F V V   G + + + +    D I+LDL L  + G E
Sbjct: 3   RILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQVRQRS-NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + +   I  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        Y+ TV G GY   
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225


>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I +GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EHEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228


>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 230

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + L L+ E F V     G+  +++     +D IILDL L  I G+ 
Sbjct: 6   RILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDGWT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  K  TPV +L+      DKV G + GADDY+ KPF+  EL AR++A++RR   
Sbjct: 66  VCKKIRE-KYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +    ++  +L ++  A+ V+V G  + LT KE+ ++  L+  K     +E  L  +
Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +       ++ +D  I +LR+KL   +   +YI TVWG GY   
Sbjct: 185 WGYDFYGSLRTVDTHIKQLREKLGR-SKAASYINTVWGIGYKFE 227


>gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
 gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha
           carboxidovorans OM5]
          Length = 233

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 171/229 (74%), Positives = 201/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSEDEA 229


>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 255

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ AL   +   L+       +   G + +   +      IILD+ L D  GF +
Sbjct: 33  VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TP+ +L+   S  DKV GL+ GADDY++KPF+  ELVARI+A++RR+ G 
Sbjct: 93  CRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRRTEGR 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q     G + ++     V   G R+ LT  E++++  L+       +++  L+ ++   
Sbjct: 153 RQQ---VGPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGED 209

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + +DV +  LR+KL        +I TV G GY L
Sbjct: 210 AFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKL 248


>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 327

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +A  +   L      V     G   +     +  D ++LDL L  + G E
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L+++  A+     G  + LT +E+ ++           ++E  +  ++ 
Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                ++  + V I +LR K+ +       I TVWG GY       +ET E
Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGE 243


>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 238

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231


>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 233

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  + L L  E F   + + GE+ ++    +  D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR   
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +  +   DL +NL   +V   GH+I +  KE +++  L+   N   T+E  L
Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDNPNWA--LSTVWGIGYKFE 229


>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 235

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+V   GE+ ++       D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     S I  GDL ++ +A  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR N ++E
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235


>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 235

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 129/235 (54%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+V   GE+ ++       D I+LDL L  + G E
Sbjct: 3   KILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVR-KNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     S I  GDL ++ +A  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR N ++E
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYLR-NPENE 235


>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 238

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +    +  L  E + V+V   GE+ ++     + D IILDL L  I G E
Sbjct: 4   KILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S G     I  GDL ++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQ 237


>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 224

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I+  L+ E + V     GE+G+++     FD +ILD  L  + G 
Sbjct: 1   MRILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ L+  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKEE 223


>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 236

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  G+L++++    V V G  I LT  E++++  LS       ++   +  +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E   + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233


>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
 gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
           E681]
          Length = 243

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V     G   +++    + D I+LDL L  + G +V
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMDGMDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  ++ TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR +  
Sbjct: 65  CREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRG 124

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       +  +  GDL  + D  T    G  + LT +EY+++  ++      +T+
Sbjct: 125 GASASESRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVMTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           E  L  ++      +V+ +DV I +LR+K+         I T  G GY+
Sbjct: 185 EHLLQAVWGFEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYI 233


>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 235

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V+    GE+ ++  +    D IILDL L  I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VAREVRKTH-DMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         S I  G L+++ +A  V   G +I LT +E++++  L+      +T+E 
Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR    +
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYLRSPEAE 235


>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
 gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
          Length = 243

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++++   +E+    E         G +G +  K  E+D +ILD  L  + G 
Sbjct: 10  MKVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDGV 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R  +   P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARIRA+ RR +
Sbjct: 70  TICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQ 129

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMF 174
           G        + I T D  ++ + + V ++G  + +LT KE+ ++  LS       ++E  
Sbjct: 130 GEKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++      + + +DV I +LR K+ +    K Y+ TVWG GY   E A
Sbjct: 190 LERVWGYDFYGDERTVDVHIKRLRNKIGSN--EKPYLHTVWGVGYKFDETA 238


>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I L L+ E + V     G + ++  K      ++LD+ L  I G++
Sbjct: 6   KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDY+ KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRKVS-SIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEY 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   +L +N    T+ ++G+ I L  KE +++  L+   N   T+E  L  ++
Sbjct: 125 KEVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV + ++R+K+ +  G    ++TVWG GY   
Sbjct: 185 GFDFYGDSRTVDVHVKRVREKI-DLEGQPWQLKTVWGVGYKFE 226


>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 232

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR   
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229


>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 224

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 131/224 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   LK + + V V + GE G +L + + +D I+LD+ L  + G 
Sbjct: 1   MRVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SLCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS+N +   V      +HLT KEY ++EL     +  L++ M L+HL+ 
Sbjct: 121 TSLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL N     ++IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRLKQH 224


>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
 gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++ K  E+D ++LDL L  + G  
Sbjct: 4   QVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A       ++  GDL ++ +++ V + G  I+LT KE+ ++ELL        ++E  L+
Sbjct: 123 PAAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 TVWGYEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYFQ 228


>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 237

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/236 (32%), Positives = 132/236 (55%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            AQ             I  GDL+++  A  V   G  I LT +E++++  L+   +  +T
Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +E  L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 REHLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 237


>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  ++  L+ E + + +   GED ++    +  D ++LD+ L  + GF+
Sbjct: 4   KILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      DKV GL+ GADDYI+KPF   EL+AR+ A  RR   
Sbjct: 64  VCRKIRE-SFSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A S     I +G LS++     V+     I LT +E+++++ L+++     T+E  L  
Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV + +LR+K+ + +G   YI+T  G GY  R
Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYFR 227


>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 240

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K +  ++   L+ E + V     G++ +E  + + FD IILDL L  + G  
Sbjct: 7   RILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-NVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A+    ++  G L +++    V V+   I LT  E++++  L+       T+   +  +
Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                E   + ID  +  LR KL +      ++ TV G GY     A   T 
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPAGASTS 237


>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I+  L+ E + V     GE+ +   K  ++D ++LD+ L    G +
Sbjct: 4   KILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDY++KPFN  EL ARI+AI+RRS+ 
Sbjct: 64  VCQLVREFS-NIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQH 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I  G+L + ++++ V ++   ++LT KE+ M+EL +       +++  L+ 
Sbjct: 123 AEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLDT 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +V+ +DV + +LR+K+    G   YI T WG GY  ++
Sbjct: 183 IWGREYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYFKD 228


>gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation
           protein [Sinorhizobium meliloti 1021]
 gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti]
 gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response
           regulator [Sinorhizobium meliloti 1021]
 gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 178/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    E  +YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---EGSDYLETA 233


>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 235

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            AQ           I  GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR  A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPEAE 235


>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 239

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+ ++   +   LK E ++V      E+ +++ +  + D  I+D+ L  + GFE+
Sbjct: 6   ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFEL 65

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +R LR       TPV  LS  S   DKV GL+ GADDYI+KPF+  E +ARIRAI RR  
Sbjct: 66  VRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQ 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++      I   DL ++ +   V V+G  ++LT  E++++  L+  +    ++++ 
Sbjct: 126 QSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K++
Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED 239


>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
 gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus casseliflavus ATCC 12755]
          Length = 234

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+   EL     FD IILD+ L ++ G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +  G +  +L    V V G +I LT KE++++     RK   + ++ 
Sbjct: 123 RQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E  
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPV 234


>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
 gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
          Length = 239

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+D   +   I   L+ E + V   +  E  +E  K  E D  ++D+ L  + GFE
Sbjct: 5   RIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +R +R      STPV  LS      DKV GL+ GADDYI+KPF+  EL+ARI+A+ RR 
Sbjct: 65  FVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124

Query: 120 R------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +            IV  DL +++D   V+++G +++LT  E+ ++  L+  +    ++ +
Sbjct: 125 QLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239


>gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 233

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  EY ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DGAEYAETA 233


>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 231

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K +   +   L+ E F V   + G+  +E+      D ++LD+ L  + G  
Sbjct: 3   RILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDGLT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  +     PV ILS      D+V GL+ GADDYI+KPF+  ELVAR++A +RR 
Sbjct: 63  VCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRRH 122

Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+     GDL V+ +   VE  G R  LT  E++++ +L+       ++E+ L  
Sbjct: 123 VPVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELLLQK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +DV I  +R+KL    G   YIETV G GY  RE
Sbjct: 183 VWGYDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRFRE 228


>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
 gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR+R 
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARS 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EHEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228


>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
          Length = 241

 Score =  293 bits (752), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 131/238 (55%), Gaps = 11/238 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 64  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEI 123

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 124 RAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLR-KKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR  K+ N      YI+T+ G GY L E   +E
Sbjct: 184 DLLLSAVWNYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEEPKMNE 241


>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
 gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
 gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
 gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
          Length = 251

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 80  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 199 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 251


>gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 178/236 (75%), Positives = 204/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    E   YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---EGSAYLETA 233


>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
          Length = 235

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A +  + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL I+D++ +   I+  L+ E + V     G + +   K    D +ILDL L  + G 
Sbjct: 1   MKILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      P+ +L+   S +DKV G   GADDY++KPF+  EL  R++AI+RR++
Sbjct: 61  EICRKIRALS-KVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTK 119

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +   GDL ++  +  V+ +G  ++LT  EY+++ ++    N   T+   + 
Sbjct: 120 NDLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +    +   + ID  I  LR+K+ +      YI+TV+G GY   E 
Sbjct: 180 KAFGYDFDGFDRTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGEE 227


>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
          Length = 234

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  G + +  D   V      + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I+DV I  LR KL +       I+TV G GY L 
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL ++D+  +   ++  L  E F V     G D +++ +  + D IILD+ L ++ G++V
Sbjct: 4   ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           L+ L+  + +  TPV ILS  +   DKV GL+ GADDYI+KPF+  E+VAR++A +RR  
Sbjct: 64  LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRKS 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++  A+  I  G L +  +     + G ++ LT KE++++ LL+       T+++ L
Sbjct: 124 APPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDILL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      E + +DV I  LR+K+        YIETV   GY  R+ +
Sbjct: 184 EKIWGYDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRFRDTS 233


>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ + H + + L+ E + V     G + +E  +  ++  +I+DL + +I G++V
Sbjct: 4   ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEIDGWKV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+      D+V G + GADDY+ KPF+ +ELVAR++A++RRSRG+
Sbjct: 64  CRDVRERS-DIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGN 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S ++ G L +  D   V +   +I  T +E++++  L+   +   ++E  +  ++
Sbjct: 123 TAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 + + +D  + K+R+KL      ++ + TVWG GY     A +E
Sbjct: 183 GYDFYGDARTVDTHVKKIREKL-ADPKVRSMLATVWGVGYKFDPEAVNE 230


>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
          Length = 239

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 131/237 (55%), Gaps = 11/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ ++  +  + D I+LD+ L  + G E
Sbjct: 4   KILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RRS  
Sbjct: 63  VCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSEM 122

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A S           IV GDL +  D      +  ++ LT KE++++  L   K   LT+
Sbjct: 123 AAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++ L+ +++     + +I+DV I  LR K+ N      YI+T+ G GY L E   +E
Sbjct: 183 DLLLSAVWNYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 239

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L+ E + V +   G +  +L    + D I+LDL L    G +
Sbjct: 4   KILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K+ TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVRA-KLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQK 122

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I   +L ++ D  TV   G  + LT +E++++  L       +T+E
Sbjct: 123 AAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++      +V+ +DV I +LR+K+        YI T  G GY++R
Sbjct: 183 HLLQAVWGFEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMMR 232


>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 236

 Score =  293 bits (751), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G+L++++    V V G  + LT  E++++  LS       ++   +  +
Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E   + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFEDPTK 233


>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
          Length = 296

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 65  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 124

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 125 LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 244 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 296


>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
 gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
           200]
          Length = 237

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+ NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54
           RIL++ED++ +   + + L+ E F V     G   +E  K  E        D IILDL L
Sbjct: 20  RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R  +   +      ++++N     V V+   + L+ KE++++EL         ++
Sbjct: 140 LLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 200 EQLLDQVWGPEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGYRF 249


>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 235

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +    D IILDL L    G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + I  G L+++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLRNPEQE 235


>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 229

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL ++DD  +   ++  L  E F V     GE+ ++  +    D +ILDL +  + GFE
Sbjct: 4   RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + L+  +   P+ ILS  +   D+V G + G DDY +KPF+  EL  R++A++RR   
Sbjct: 64  TYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + ++++  G+L+++   +TV V   ++ LT K+++++ L++   N   TK   L+ +
Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     +   + V I +LR+K+        YI+TVWG GY   
Sbjct: 183 WDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226


>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
          Length = 237

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IED+  +    +  L+SE + VY  + GE+G  L + Y+ D I+LDL +    G+E
Sbjct: 4   RIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ IL+  +   D++ GL  GADDY++KPF+  ELV R++ ++RR   
Sbjct: 64  LCEEIRQ-HSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL ++   + V V GH I LT KE++++ +++       ++   
Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D   E     + V + +LR+KL        +I TVWG GY    +  +E
Sbjct: 183 LEQIWDFEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFDPDGGNE 236


>gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
 gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal
           replication initiation [Agrobacterium radiobacter K84]
          Length = 233

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 174/233 (74%), Positives = 202/233 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE   +E  E  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREPDNNELAESA 233


>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
 gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
 gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE G+      + D I+LDL L  + G E
Sbjct: 4   KILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR++ 
Sbjct: 64  VCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQT 123

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +             ++ G+L +  +   V  Q  R+ LT KE++++  L   K   LT+
Sbjct: 124 LSVQPEETEEPDAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLTR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ LN +++     + +I+DV I  LR K+        YI+T+ G GY + E 
Sbjct: 184 DLLLNAVWNYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEEP 236


>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 230

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L  E + V   + G   + L +    D I+LDL L  + G +
Sbjct: 4   KILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLPGMDGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+ +  +    + +L+  +   DK+ GL+ GADDY+ KPF+  EL+ARI+A++RRS
Sbjct: 64  VCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRRS 123

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  A     +V G+L +N       +   ++ LT KE+++++L         T+E  L+ 
Sbjct: 124 KRDAPLAGELVVGNLKLNFSRYEAHIGKVKLELTPKEFELLKLFVTDMGKVFTREQLLDK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +DV I  LR KLS        IETV G GY  RE
Sbjct: 184 VWGYEYYGDTRTVDVHIRHLRAKLSIDPVLAEAIETVRGVGYRFRE 229


>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 331

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   +       FD +ILDL +  + G  
Sbjct: 106 KILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDGMT 165

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            LR +R   I+TPV IL+      DK+ GL+SGADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 166 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTMP 225

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 226 KPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 285

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L      ++YI TVWG GY    +A
Sbjct: 286 WNYDYFGEDRTVDTHVKMLRGHLG---KCRSYIATVWGIGYKFDPDA 329


>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
 gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
           [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 138/226 (61%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +AH I+  LK E   V ++  GEDG  L +  ++D IILDL L    G 
Sbjct: 1   MKILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR + +STPV +L+   S+EDKVRGL +GADDY++KPF  EEL+AR+RA++RR  
Sbjct: 61  VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL ++  ++ V  QG  I LT KEY ++E L       L++ +   H++D
Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +PE  +IDV+I  LR K+ +     + + T+ G+GY+L ++  
Sbjct: 181 MNFDPESNVIDVYISHLRSKI-DKGFDVSLLHTLRGQGYLLTDDTP 225


>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
 gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus uberis 0140J]
          Length = 240

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 11/239 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D++ +   ++  LK E +   + + G   ++L +   +D I+LD+ L  + 
Sbjct: 1   MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R     TP+ ++S      DKV  L+ GADDY++KPF+  EL+AR++AI+RR
Sbjct: 61  GIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRR 120

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   + G  +       L +  +   V      ++LT KE++++  L    N TLT
Sbjct: 121 TEKTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +E  L  ++      E +++DV I KLR+K+ +      +I+T+ G GY  +E  KDET
Sbjct: 181 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKFKE-LKDET 238


>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 224

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I+  L+ E + V     GE+G+++     +D IILD  L    G 
Sbjct: 1   MRILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+   A  K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRDA-DKKLIHTVRGVGYILKEE 223


>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
 gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
           4222]
          Length = 237

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+ NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 234

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 128/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   LK+E +++     GE+ +E  +    D ++LDL L    G E
Sbjct: 3   KILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREIRKDS-AVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     S IV GDL V+ +A     +G  I LT +E++++  L+      +T+E  
Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV I +LR+K+ +     +YI T  G GY L+   ++
Sbjct: 182 LETVWGYDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGYFLKNPDQE 234


>gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
 gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 894]
 gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CFN 42]
 gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal
           replication initiation [Rhizobium etli CIAT 652]
          Length = 233

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  EY ETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DGTEYAETA 233


>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 236

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +A  ++   + E + V     G++ + + K    D I+LD+ L    G +
Sbjct: 3   KLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+R 
Sbjct: 63  VCRTVRQT-YDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q ++   +L ++L++ TVE  G  + LT +E++++  L+  +   LT+E  L 
Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      YI T  G GY LR
Sbjct: 182 SVWGFDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTLR 227


>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
 gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
           29799]
          Length = 238

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K L   I+  L+SE + V     GE+ +EL +   FD IILDL +  I G 
Sbjct: 12  MKILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    +R    + P+ +L+  S   DK+ G + GADDYI+KPFN  EL AR+RA++RR+ 
Sbjct: 72  QACMRIREFS-NVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAG 130

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             AQ    + +  G + ++ D ++       + LT KE+ +IELL        ++E  LN
Sbjct: 131 MAAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLN 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+KL        YI T WG GY  +
Sbjct: 191 VVWGYEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYFK 236


>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus pseudintermedius HKU10-03]
 gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus pseudintermedius ED99]
          Length = 234

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   ++  L+   + V V   GE+ ++  K  + D I+LD+ L    G E
Sbjct: 4   RVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS  
Sbjct: 64  VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +      IV G + +  D   V      + LT KE++++  L  R+   +T+E  
Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           LN +++     + +I+DV I  LR KL        +I+TV G GY L 
Sbjct: 184 LNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231


>gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis
           X14]
          Length = 233

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 169/229 (73%), Positives = 201/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEDEA 229


>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 229

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G DG+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +R S+ 
Sbjct: 64  VLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQN 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + +   +  G LS+N   + V   G  I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  +R+KL  A      I+TV G GYVL+EN
Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLEIANATP-IIQTVRGVGYVLKEN 227


>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
 gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
          Length = 237

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ ++L     ++ +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++++    L+++L+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +++D     +   + V I KLRKK+        +I+TVWG GY  
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230


>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
          Length = 237

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S         +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 235

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+ ++A  ++  L+   F V     G  G++L +  +   I+LDL L ++ G E
Sbjct: 4   KIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      DKV GL+ GADDY++KPF+  E+VAR++AI+RR   
Sbjct: 64  VCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMNQ 123

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I+ GD+ +  D         R+ LT KE++++  L+  K   LT++  L
Sbjct: 124 QTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + +++     + +I+DV I  +R+K+        YI+T+ G GY + E   +
Sbjct: 184 SAIWNYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEEPKAE 235


>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 224

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD ++LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEE 223


>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
 gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK+EN++V+     ++ +   +  + D  +LD+ + DI GF
Sbjct: 1   MNILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +LR +R   ++ PV +L+      DK+ G   GADDYI+KPF   ELVAR++A +RR  
Sbjct: 61  TILRKIRET-LNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S    + +I    L +N + + V +    I LT  E+ ++  L   + T ++ E  
Sbjct: 120 LYNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       + V I  LR+K+ +AA    YI+TVWG GY + +
Sbjct: 180 FQEIWGEKYFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTIEK 228


>gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 232

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 166/227 (73%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELML+SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLQSEGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+K+STP+ ILSG++ I+DKVRGL  GADDY++KPF+K+ELVARI+AIVRRS+
Sbjct: 61  EVLKTLRVSKVSTPILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTV+V G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL  A GGK+YIETVWGRGYVLR+   +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLQTATGGKHYIETVWGRGYVLRDPGHE 227


>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 249

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L++  + V V   GE+ +E  +  + D I+LD+ L    G E
Sbjct: 17  KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKDGIE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 77  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 136

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  I+  ++ +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 137 VNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 196

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 197 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245


>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 230

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ +  I GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  SS  DKV GL++GADDY+SKPF  +EL+AR++A++RRS+ 
Sbjct: 65  LCRLIRAES-SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  GDL + ++   V   G  +  + KE+ +   L   +    ++E  L 
Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE 230


>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 237

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLRY-KTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+ NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFQNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
 gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus lugdunensis HKU09-01]
          Length = 236

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L++  + V V   GE+ +E  +  + D I+LD+ L    G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  I+  ++ +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
          Length = 235

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   +   L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
           M21/2]
          Length = 232

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR   
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229


>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 228

 Score =  292 bits (750), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L+S  ++      G+        Y+ D ++LD+ L  + G +
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R     TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKWIRKE-CETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L  ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV I +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGYKFE 226


>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
           [Pediococcus acidilactici 7_4]
 gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 233

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ +E  +  E D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVRAKH-NIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             QS       I  G L +N D+ +V   G ++ LT +E++++  L+   +  +T+E  L
Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+         + T  G GY LR    D
Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYLRNPETD 233


>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
 gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
          Length = 237

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ +   +   L+ E ++      G  G++L      D ++LDL L  + GFEV
Sbjct: 5   VLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R    + P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A +RRS   
Sbjct: 65  CRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAMA 124

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  +  +   +  G + V+ +  TV   G+ + LT +EY +I  L+ +     ++E
Sbjct: 125 PAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSRE 184

Query: 173 MFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + H+++      +V+ +DV + +LR+K+ +      +I T  G GY+ 
Sbjct: 185 ALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGYLF 234


>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 237

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E +   +   GE+ +++   ++ + I+LDL L  + G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELR-SSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQSLIVTG-----------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             Q     G           DL VNL   +V   GH I +  KE +++  L+   N   T
Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L+H++      + + +DV I +LR+K+ +    K  + TVWG GY   
Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--EKWALTTVWGIGYKFE 234


>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  LA  IEL L+ E + V V   G  G+   +  + D +ILD  L  + G E
Sbjct: 4   HILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+    + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ 
Sbjct: 64  ICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   DLS+N   + V      I LT KE+ +++ L       LT++  L  ++  
Sbjct: 124 EDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +  II+V++  LR KL    G K  ++TV G GYVLRE++
Sbjct: 184 DFMGDSNIIEVYVRYLRLKLEAN-GEKRLVQTVRGVGYVLRESS 226


>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus COL]
 gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
 gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
 gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MR1]
 gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus N315]
 gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus COL]
 gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9781]
 gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A9763]
 gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
 gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
 gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
 gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
 gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A6224]
 gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
           A5948]
 gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus A5937]
 gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 930918-3]
 gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus D30]
 gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED98]
 gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus TW20]
 gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A10102]
 gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9765]
 gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus A8117]
 gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus 04-02981]
 gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A9754]
 gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
 gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus A8796]
 gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
           2]
 gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21172]
 gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21189]
 gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus 21193]
          Length = 234

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  G + +  D   V      + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I+DV I  LR KL +       I+TV G GY L 
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
 gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
          Length = 345

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +A  +   L    + V +   G   +     +  D ++LDL L  + G E
Sbjct: 15  HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +L+     ED+V GL+ GADDY++KPF+  ELV R+ +++RR+  
Sbjct: 75  VCRRLRE-RAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRRTGP 133

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A  + +  G L+V+  A+     G  + LT +E+ ++            +E  +  ++ 
Sbjct: 134 DAVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRAFGREELMREVWG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++  + V I +LR K+ +       I TVWG GY   
Sbjct: 194 WEF-GDLSTVTVHIRRLRGKIEDDPAAPRAIRTVWGVGYRFE 234


>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 233

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  ++    +  D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + 
Sbjct: 66  VCREIR-HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +   DL++NL   +V   G ++ +  KE +++  L+   N   T+E  L
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGYKFE 229


>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
 gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
          Length = 235

 Score =  292 bits (749), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V     G++G EL    + D I+LDL L  + G E
Sbjct: 3   KILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+  
Sbjct: 63  VTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTES 122

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         + +  GDL +  ++         + LT KE++++  L+  K    +++
Sbjct: 123 RKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSRD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ +++     E +I+DV +  LR+K+        YI+T+ G GY + 
Sbjct: 183 QLLDAVWNYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKME 232


>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 235

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 132/234 (56%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     G++ + +    + D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEIDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K  TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            AQ           I  GDL+++  A  V   G  I LT +E++++  L+   +  +T+E
Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR +A+
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPDAE 235


>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
 gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
           700633]
          Length = 238

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 9/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V     GE+G+ +      D +ILDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 63  VCREIRKTS-NVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    + + IV G L ++ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      +V+ +DV + +LR+K+ +      +I T  G GY ++   +++  
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYIKTPEQEKEA 238


>gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 233

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 170/229 (74%), Positives = 200/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE + DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPSDDEA 229


>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
 gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
          Length = 237

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++D     +   + V I KLRKK+        +I+TVWG GY       +E
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKHEE 237


>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+   F V     G++ +       +  IILDL L  + G +
Sbjct: 5   RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGMDGRD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + P+ +L+      ++V G + GADDY+ KPF+  ELV R++A+++R+  
Sbjct: 65  VCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A   +    L + +DA+ VEV G  ++LT KE+ ++  ++ R +   ++E  L 
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
            +++ +   + + +D  I +LR+KL  A      YI TVWG GY   
Sbjct: 184 DVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFE 230


>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
 gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 224

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD I+LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEE 223


>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
 gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
          Length = 239

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G+D ++    + FD ++LDL L  +PG  
Sbjct: 8   RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPGER 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR   
Sbjct: 68  VCRVIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  G+L++++    V V    + LT  E++++  LS       ++   +  +
Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                E   + ID  +  LR K+ +      ++ TV G GY   +  K  + +
Sbjct: 187 LGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQPSQQ 239


>gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 233

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 169/228 (74%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPTEDE 228


>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus RF122]
 gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus A9635]
 gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus H19]
 gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus ED133]
 gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O11]
 gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus O46]
          Length = 234

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  G + +  D   V      + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I+DV I  LR KL +       I+TV G GY L 
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 241

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ E + V     G+  +E  + + FD I+LDL L  + G  
Sbjct: 7   RILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    S P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-SVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125

Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A+  +     GDL +++    V V+G  + LT  E++++  L+       T+   +  +
Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E   + ID  +  LR KL +      ++ TV G GY   
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229


>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   +   L+ +   V     GE+ +E  K  E+D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGS 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +  G+L ++ + + V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 KQDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYFQ 228


>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
 gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
           A2-165]
          Length = 299

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   + L     FD +ILD+ +  + G  
Sbjct: 74  KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R   I+TPV IL+      DK+ GL+ GADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +++    +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L    G   YI TVWG GY    +A
Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 297


>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 235

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   +   LK   + V +   G   ++     E D ++LD+ L ++ G 
Sbjct: 1   MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRA--PEADLVLLDIMLPEVDGL 58

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R L+    +   P+ +L+  +   D+V GL+ GADDY+ KPF+  EL+AR++A++RR
Sbjct: 59  EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118

Query: 119 S---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           S             +  +  G L ++  +    +    I LT KEY++++LL        
Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  L  ++      + + +DV I  LR KL +     + IETV G GY  
Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230


>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 233

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  IE+ L +E + V   D G D + +    + D ++LD+ +  + G EV
Sbjct: 6   ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            RA+R  + + P+ +LS  S   DK+ GL++GADDY++KPFN  ELVAR++A +RR    
Sbjct: 66  CRAIRRER-NVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYLSL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G L ++   ++V   G  I LT  E+ ++ LL+       + E  
Sbjct: 125 NPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSEEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          + V I +LR+K+ +       I TVWG GY + +
Sbjct: 185 FERVWKEHYFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGYKIEK 233


>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 235

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E + V+    GE+ +E  +    D IILDL L    G E
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  EL AR++A +RR   
Sbjct: 63  VCREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + I  G L+V+ DA  V  +G  I LT +E++++  L+      +T+E 
Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYLRNPEQE 235


>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     G++  EL    ++D I+LD+ L ++ GFE
Sbjct: 4   KVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR++G
Sbjct: 64  VCQMIRE-KSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKG 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       IV+G++ ++LD++ V +    ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 RKQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +V+ +DV + +LR+K+  +     YI T WG GY  ++
Sbjct: 183 LVWGYDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFFQK 229


>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 237

 Score =  292 bits (749), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++IED+  +    +  L+ E + VY    G +G  + + Y+ D IILDL +    G+E
Sbjct: 4   RIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQ-YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL ++   + V V GH I LT KE++++ +++       ++   
Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  +++   E     + V + +LR+KL        +I TVWG GY    +  +ET
Sbjct: 183 LEQIWNFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFEPDGGNET 237


>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
 gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
           TIGR4]
 gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
 gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
 gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
 gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
 gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
 gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
 gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
 gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
 gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
 gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
 gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
 gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV104]
 gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae INV200]
 gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
 gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
 gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
 gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
 gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
 gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
 gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
 gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 235

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L  E F     + GE  IE     + D I+LD+ L  + GF 
Sbjct: 4   KILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ISTP+ +++      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRKLRQT-ISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + I  GDL +++D   V+     + LT +E+++++ L+L++    ++E  L 
Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +V+ +DV + +LR+K+ N     +YI T  G GY  
Sbjct: 183 KVWGYEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGYYF 227


>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 235

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E ++V     G++ +++      D ++LD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q+          I  GDL ++  A  V   G  I LT +E+Q++  L+      +T+E
Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR + +
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPSEE 235


>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V   G  G+   +    D I+LD  L  I G E+
Sbjct: 5   ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGISGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+    I D+V GL +GADDYI KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQEE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I+  DL +N   + V      I LT KE++++E L       LT++  L  ++   
Sbjct: 125 NPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL    G K  I+T+ G GYVLR+
Sbjct: 185 FMGDSNIIEVYVRYLRLKLEEN-GEKRLIQTIRGVGYVLRD 224


>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  IE  LK   + V     GE   E  K +  D I+LDL L  + G +
Sbjct: 5   KILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+ +  + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + 
Sbjct: 65  VCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQA 124

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              S        G L V  + + V ++G  I LT KE++++  L   +   L+++  L+ 
Sbjct: 125 LPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHG 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     + +I+DV I  LR K+   A    YI TV   GY L
Sbjct: 185 VWDYHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228


>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V     G   +++    + D I+LDL L  + G +V
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMDGMDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  ++ TP+ +L+      DKV GL+ GADDY++KPF+  EL+AR++A +RR +  
Sbjct: 65  CREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRG 124

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       +  +  GDL  + D  T    G  + LT +EY+++  ++      +T+
Sbjct: 125 VAGTPESRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKVMTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           E  L  ++      +V+ +DV I +LR+K+         I T  G GY+
Sbjct: 185 EHLLQAVWGFEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYI 233


>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
           43243]
          Length = 234

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 129/232 (55%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L  +   V     GE+ +E+ K   +D ++LDL L  I G  
Sbjct: 4   KILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKIDGIA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI RRS G
Sbjct: 64  VCQQVREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +I +G L ++ DA+T+++ G  I+LT KE+ ++ELL+       ++E
Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++      +V+ +DV + +LR+K+   A    YI+T WG GY   +N
Sbjct: 183 SLLNTVWGYDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234


>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 233

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+   F V     G++ +       +  IILDL L  + G +
Sbjct: 5   RILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGMDGRD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + P+ +L+      ++V G + GADDY+ KPF+  ELV R++A+++R+  
Sbjct: 65  VCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A   +    L + +DA+ VEV G  + LT KE+ ++  ++ R +   ++E  L 
Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
            +++ +   + + +D  I +LR+KL  A      YI TVWG GY   
Sbjct: 184 DVWNYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFE 230


>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 245

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+KA+   +E  LK   ++V     G     +    ++D I+LDL L  + G E
Sbjct: 9   KILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +I TP+ IL+      DK+ GL+ GADDY++KPF+  E++ARI+AI RR   
Sbjct: 69  ITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRITS 128

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         +        +V+L   +V   G R+ LT KE++++     R    L
Sbjct: 129 SSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRVL 188

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++E  LN ++      + +++D+ +  LR+KL +      YI+T  G GY    +AK
Sbjct: 189 SREKLLNGVWGYDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFNGDAK 245


>gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation
           protein [Fulvimarina pelagi HTCC2506]
          Length = 230

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 172/230 (74%), Positives = 201/230 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL+NA GGKNYIETVWGRGYVLRE  ++   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANATGGKNYIETVWGRGYVLREIEEEAAA 230


>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
 gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
          Length = 236

 Score =  292 bits (748), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+KA+  ++   L+ EN+ V     G++ +E    + FD +ILDL L  +PG  
Sbjct: 7   RILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR RA++RR   
Sbjct: 67  VCRAIR-DNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  G+L++++    V V    I LT  E++++  LS       ++   +  +
Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E   + ID  +  LR K+ +      ++ TV G GY   +  K
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFEDPTK 233


>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
          Length = 235

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
 gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
          Length = 233

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRSKH-NTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    + +NL    V V G  + +  KE +++  L+   N   T+E 
Sbjct: 125 AKPETPAASRGKVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 LLDQIWGYEYVGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGYKFE 231


>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
 gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
           35311]
          Length = 229

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++D+K ++  ++  L  E + VY    GE+ +E     E D ++LDL L  + G EV 
Sbjct: 1   MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---- 119
           R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR     
Sbjct: 61  REIRKT-YNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSV 119

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 QS +  GDL+++ DA  V   G  I LT +E++++  L+      +T+E  L  
Sbjct: 120 KEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQT 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      +V+ +DV + +LR+K+ ++     Y+ T  G GY LR   ++
Sbjct: 180 VWGYDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYLRNPEQE 229


>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 247

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/241 (30%), Positives = 132/241 (54%), Gaps = 20/241 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +E  L  E + V  +  G+   +L     FD IILDL L  + G +
Sbjct: 3   KVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K++TP+ +L+      +K+ GL+ GADDY++KPF+  E+VAR++AI+RRSR 
Sbjct: 63  VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122

Query: 121 -------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
                              G  +S+I  GD+++N    +V   G  + +T KE++++  L
Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + R +  +++E+ L+ ++D       +++DV I  LR+K+        YI TV G GY  
Sbjct: 183 AERVDRIVSREILLSKIWDFDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGYKF 242

Query: 222 R 222
            
Sbjct: 243 E 243


>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 234

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L +  + V   + G D +++ K      I+LDL L  + GF+
Sbjct: 5   KILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLPGLDGFD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + ++  K +    + +L+      DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++   +  L ++ D   V +   +I LT KE+ ++++L   K   L +E  L+
Sbjct: 125 YPGVDIEENSYESQGLKIDFDRHEVFINNQKIELTLKEFDLLKILIKNKGKILQRETLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E + +DV I  LRKK+        +IET+ G GY    
Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231


>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 232

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V V + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A  +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR   
Sbjct: 65  VCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + +    +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229


>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 131/224 (58%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ +++  +N  V   G +  E+   Y+ D ++LD+ L  + G +
Sbjct: 7   KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R     TPV +L+      DKV GL+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKE-YETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL++++++ TV  +G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV + +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226


>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 226

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  ILD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLTGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ L+   DLS+N   + V  +   I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 AEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  II+V+I  LR KL      K  I TV G GY LRE +
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEEN-NEKRLIHTVRGVGYALREQS 226


>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ E   V     GE+ +E  K  E+D I+LD+ L  + G E
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR R 
Sbjct: 64  VCQQIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRK 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V+GDL ++ + + V + G  I+LT KE+ ++ELL+   N   ++E  LN
Sbjct: 123 EEAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 LVWGYEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYFQ 228


>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
 gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
 gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
           555]
 gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  292 bits (748), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ ++S  + V V + G+        Y+ D +ILD+ L +I G +
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R     TPV +L+      DKV GL+ GADDYI KPF  +E++ARI+A++RR   
Sbjct: 67  VLKWIRKD-YETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV + +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226


>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus E1410]
 gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus M876]
 gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus C427]
 gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M899]
 gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus C160]
 gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus A017934/97]
 gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus aureus subsp. aureus M1015]
 gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Staphylococcus aureus subsp. aureus M809]
 gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   ++  L++  + V V   G++ +E  +  + D IILD+ L    G +
Sbjct: 4   KVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  +   D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  G + +  D   V      + LT KE++++  L  R+   +T+E  LN
Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I+DV I  LR KL +       I+TV G GY L 
Sbjct: 184 TVWNYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229


>gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
 gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 174/230 (75%), Positives = 199/230 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL++AA GKNYIETVWGRGYVLRE   ++  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASAASGKNYIETVWGRGYVLREPEVEQAA 230


>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes FSL J2-071]
 gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
 gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
           F2-208]
 gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
           S4-120]
 gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           N1-067]
 gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
           S4-171]
          Length = 237

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      S +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 235

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 125/233 (53%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+   +L     FD IILD+ L ++ G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q         ++  G +  +L    V V G +I LT KE++++     RK   + ++ 
Sbjct: 123 RQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E  +
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKFQEPTQ 235


>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 234

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I L L+ E + V +   G   +E    +  D +ILD+ +  + G EV
Sbjct: 6   ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +ALR   +STP+  LS  S+  DK  GL +G DDY+SKPF+  EL+ARI+A +RR+R  
Sbjct: 66  CQALR-KNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRIL 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  GDL++NLD  +V V G  I L+ KE+Q++ LL+   N   + E  
Sbjct: 125 ENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L+      + + + V I  +RKK+   A     I+TV G GY  
Sbjct: 185 FETLWATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGYKF 231


>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
 gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
           J2-064]
 gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
           J1-208]
 gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
 gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
           monocytogenes HPB2262]
 gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
 gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
 gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
           str. Scott A]
          Length = 237

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      S +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV + +LR+K+ +      ++ T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYLRNPEQE 237


>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
           regulatory protein sphR
 gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
 gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
           elongatus PCC 6301]
 gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 257

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---------YEFDAIILDL 52
           RIL++ED+  +   + L+L+ E F V V   G   +   +             D ++LDL
Sbjct: 25  RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G +  R LR   ++ P+ +LS   +  D+V GL+ GADDY++KPF   ELVAR 
Sbjct: 85  MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144

Query: 113 RAIVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RRS+       +++    L +  +   V +    + L+ KE++++EL         
Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  L  ++      + K IDV I  LR+K+       +Y+ TV G GY L
Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256


>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   +   LK   + V     G D + L     F  I+LDL L  + G E
Sbjct: 5   KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+ TP+ I++  +   DKV GL+ GADDYI+KPF+  E++ARI+A++RR+  
Sbjct: 65  VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124

Query: 122 HA------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         +++++ GDL ++ +   V   G  I LT KE++++     R+   L
Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++  LNH++      E +I+D+ I  LR+K+         I TV G GY    + 
Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDG 240


>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
 gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
          Length = 235

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  LK E FNV     G++ I++    + D ++LD+ L +  G EV
Sbjct: 5   ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 65  CREIR-KKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNIA 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   + I  G L++  DA  V  +   I LT +E++++  L       +T+E  L
Sbjct: 124 PAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +      +I T  G GY LR   ++
Sbjct: 184 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 235


>gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi
           Nb-255]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 169/228 (74%), Positives = 201/228 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEDE 228


>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
 gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  ++    ++ D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR+RA++RR + 
Sbjct: 66  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +   DL++NL   +V   G +I +  KE +++  L+   N   T+E  L
Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 DHIWGYEYIGDTRTVDVHIKRLREKIKDHPQWS--LSTVWGIGYKFE 229


>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 225

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ +D+  L   +   L++E + V   + GE+ +   +   FD ++LD+ L  + GFE
Sbjct: 5   HILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             RA+R      P+  LS      DK+RGL  G DDY++KPF+  E+VAR++A++RR R 
Sbjct: 65  ACRAIRAFS-DVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRP 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+     G L+++     V   G  + +T KE +++  L+       ++E   + ++  
Sbjct: 124 SAEQW-RFGPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWG- 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            D  + + + V I ++R+K+        +I+TV G GY  
Sbjct: 182 -DFGDPRTVTVHINRIREKIEADPSRPQFIQTVRGLGYRF 220


>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
 gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
          Length = 232

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDK + +S+ L+L  E + V V   G + +   K +  D ++LD+ L +  G+E
Sbjct: 3   KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DKV GL+ GADDYI+KPF  +EL+ARI A++RR + 
Sbjct: 63  VCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  IV     ++L  +TV+V+G  ++L+ +E+++++LL        T++M + H++
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +DV+I  LR+K+ +      YI TV   GY  +E  +D
Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNED 229


>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 229

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  L   ++  L+ + + +     GE+ +E  K    D I+LDL L  I G +
Sbjct: 4   KILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKIDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+    TP+ +L+       K+ GL+ GADDY++KPFN  EL ARI+A++RR + 
Sbjct: 64  VCQQIRL-NSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   D  +N   + V ++G  ++LT KE+ ++ LL+       ++E  L  
Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV I +LR+K+   +    YI T WG GY  R
Sbjct: 183 IWGYEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYFR 227


>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
           sulfurreducens KN400]
          Length = 224

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K ++  I+  L+ E + V     GE+G+++     +D I+LD+ L    G 
Sbjct: 1   MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR  K STPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA+VRRS 
Sbjct: 61  SVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DRESDKKLIHTVRGVGYILKEE 223


>gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB18]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 168/229 (73%), Positives = 200/229 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  ++E 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPHEEEA 229


>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  LA  ++  L  E +   V   G + +EL +  +   +ILD+ +  + G E
Sbjct: 5   KILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS   +  DK+ GL  GADDYI KPF+  E+VAR++A +RR + 
Sbjct: 65  VCRRIRAES-NVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A        +    L +++      + G  + LT KE++++  L+L  N  LT+E    
Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   +  ++  + V I KLR+K+ +      +I+TVWG GY     AK
Sbjct: 184 NVWGFNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKFSGGAK 233


>gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA
           [Rhodopseudomonas palustris CGA009]
 gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Rhodopseudomonas palustris CGA009]
 gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 168/228 (73%), Positives = 201/228 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE ++D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPSEDD 228


>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
           TIGR4]
 gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pneumoniae Hungary19A-6]
 gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
 gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974]
 gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
           response regulator [Streptococcus pneumoniae AP200]
 gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
 gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
 gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
 gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
 gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
 gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
 gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
 gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
 gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
 gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
 gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
 gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Hungary19A-6]
 gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1873-00]
 gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC1087-00]
 gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP195]
 gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC0288-04]
 gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae CDC3059-06]
 gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae MLV-016]
 gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
 gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 70585]
 gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae JJA]
 gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae P1031]
 gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
 gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
 gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
 gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
 gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP14-BS292]
 gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae SP-BS293]
 gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS458]
 gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS457]
 gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae BS397]
 gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus
           pneumoniae AP200]
 gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus pneumoniae 670-6B]
 gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
 gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
 gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
 gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
 gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
          Length = 234

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 63  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234


>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 235

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 129/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V     G++ + L      D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +   TPV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR + 
Sbjct: 63  VLRQIR-SNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q+          I  GDL+++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR   +
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPTEE 235


>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 238

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 77/236 (32%), Positives = 131/236 (55%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +    +  L  E + V V   GE+ ++  K  + D IILDL L  + G E
Sbjct: 4   KILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRKTK-DTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++ S         I  GDL ++ +A +V  +G  I LT +E++++  L+      +T+E 
Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++      +V+ +DV + +LR+K+ ++     ++ T  G GY LR    D+ 
Sbjct: 183 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYLRNPESDQA 238


>gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
 gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta
           ATCC 11568]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 164/226 (72%), Positives = 193/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  KI+TPV ILSG   I+ KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPAE 226


>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 233

 Score =  291 bits (747), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E ++V     GE+ +   +  + D I+LDL L  I G E
Sbjct: 3   KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VARQVRAKH-NIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q      + I  G L +N D+ +V   G ++ LT +E++++  L+      +T+E  L
Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+    G    + T  G GY LR    D
Sbjct: 182 QTVWGYDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYLRNPEND 233


>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++DD+ +   +   L+ E ++V     G + ++  +    D ++LD+ L  + G+
Sbjct: 1   MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+ +L+      D++ GL+ GADDY+ KPF+ +E++AR+RAI RR +
Sbjct: 61  GVCKEIRRTS-DVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQ 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +     + ++  GD  ++ +++++ + G  + LT  EY+++EL         ++   +
Sbjct: 120 PASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLI 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + D   E   + +D  I  LRKKL  +    +YI+T++G GY L 
Sbjct: 180 EKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLV 226


>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
           protein [Atopobium vaginae DSM 15829]
 gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
 gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
          Length = 241

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 4/236 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K +  ++   L+ E + V     G+  +E  + + FD IILDL L  + G  
Sbjct: 7   RILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 67  VCRAVRETS-NVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++    ++  G L +++    V V+   I LT  E++++  L+       T+   +  +
Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
                E   + ID  +  LR KL +      ++ TV G GY        +   + E
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFEAPQSQDAPSHQE 241


>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 406

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   + L + +  DA++LD+ L D+ G E
Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+  
Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 279

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    + +V GDL+++ +++ V+  G  +HLT  E++++          L+K   L+ 
Sbjct: 280 TTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILDR 339

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  ++++++  LRKK+   AG    I T+ G GYVLR 
Sbjct: 340 VWNYDFGGQANVVELYVSYLRKKI--DAGRPPMIHTMRGAGYVLRP 383


>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 224

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V+    GE+G++L     FD I+LD  L    G 
Sbjct: 1   MRILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  K  TP+ +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++L    V  +   I LT KEY ++E      +  LT+ M   H++D
Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEE 223


>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
 gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae OXC141]
          Length = 235

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 280

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 51  KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 110

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 111 VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 169

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 170 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 229

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 230 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 279


>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  291 bits (747), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 123/219 (56%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++LKSE F  +    G+  +E  +    D I+LDL L    G E
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V+GL+SGADDY+ KPF  +ELVAR+RA +R S  
Sbjct: 64  VCREIREESG-VPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+S+++   TVE  G  + LT  E++++  L+ +     ++E  L  ++  
Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+       + + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGYK 221


>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 276

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +A  +   L      V     G   +     +  D ++LDL L  + G E
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L+++  A+     G  + LT +E+ ++           ++E  +  ++ 
Sbjct: 137 DPAPDPVRLGRLALDPTARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
                ++  + V I +LR K+ +       I TVWG GY       +ET E   T
Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGEVDGT 247


>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
 gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
           15176]
          Length = 271

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   F       G   + +      D +ILD+ +  + G  
Sbjct: 47  KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R  KI TPV +L+  S   DK+ GL+ GADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTMP 166

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +QS  V GDLS++  + TV+V G    LT KE+ ++  L   K   L++E  L  +
Sbjct: 167 RTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQKV 226

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     E + +D  I  LR  L      +NYI TVWG GY    +
Sbjct: 227 WNYDYYGEDRTVDTHIKMLRGHLGP---CRNYIVTVWGIGYKFDPD 269


>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 265

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y+ D +ILDL L    G E
Sbjct: 31  KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKDGLE 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 91  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++  A   I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 210 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGYYVKQPTEE 265


>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V     GE+ ++L     ++ +ILDL +  I G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRLR-NNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++++    L++++    V V    I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++D     +   + V I KLRKK+        +I+TVWG GY       +E
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKYEE 237


>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
 gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
          Length = 239

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  GDL +++    + V+G  + LT  E++++  L+        +   +  +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                E   + ID  +  LR KL +      ++ TV G GY     A+ E  +
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQPEKAD 238


>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 232

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 6/231 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D+  +   I+  L+ E +N +  + G   +++ K  + D +ILD+ ++D  G
Sbjct: 1   MKNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  K   + PV +LS  S   D++ GL+ GADDYI+KPF+ +ELVAR++A+ R
Sbjct: 61  YEVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFR 120

Query: 118 R---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  I  GD+ V+   ++V+ +   I L+ KE+++++LL   +   L ++  
Sbjct: 121 RIENLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++    + + + +DV I  LR+KL +      YIETV G GY  RE +
Sbjct: 181 LQRVWGYEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRFREGS 231


>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
 gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 228

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     GE+ + L K  ++D I+LD+ L  + G+E
Sbjct: 3   KVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    + P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-TVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVS 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           HA       +I +  L ++ D++ V + G  ++LT KE+ ++ELL    N   ++E  LN
Sbjct: 122 HAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+    G  +Y+ T WG GY  +
Sbjct: 182 TVWGYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 227


>gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Mesorhizobium sp. BNC1]
 gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1]
          Length = 249

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 170/226 (75%), Positives = 198/226 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 19  MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 79  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL  A+GG+NYIETVWGRGYVLRE  +
Sbjct: 199 GMDEPELKIIDVFICKLRKKLDMASGGQNYIETVWGRGYVLREPEE 244


>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 235

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E ++V     G++ +++      D ++LD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +K   PV +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R  + 
Sbjct: 63  VLRQIR-SKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKS 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +Q+          I  GDL ++  A  V   G  I LT +E++++  L+      +T+E
Sbjct: 122 VSQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      +V+ +DV + +LR+K+ +     N++ T  G GY LR + +
Sbjct: 182 HLLQQVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYLRPSEE 235


>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 228

 Score =  291 bits (746), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 124/224 (55%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L+S  ++      G+        Y+ D ++LD+ L  + G +
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R     TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKWIRKES-ETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L  ++
Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV I +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQ---GGPNWQIETVWGVGYKFE 226


>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
 gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
           [Syntrophus aciditrophicus SB]
          Length = 245

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   +   L+ E F V     GE+ ++  +  + D +ILDL L  + G +
Sbjct: 16  RILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLD 75

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      DKV GL+ GADDYI+KPFN  ELVAR+RA++RRS
Sbjct: 76  ICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRS 135

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +           L V+     V V G +I L   E +++  L+ +     +++  L
Sbjct: 136 SQRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  +        YI TV G GY   + +
Sbjct: 196 DAVWGEEAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYKFADGS 245


>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
 gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 237

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  I G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V   G  + LT  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 234

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 133/232 (57%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q       + I  G ++++ +       GHR+ LT KE++++   + R   TL+++  
Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           LN ++      E +++D+ +  LR K+       +Y++TV G GY +    +
Sbjct: 183 LNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 234


>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 231

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   ++  L+ E F+V     G + +   K  + D +ILDL L  I G E
Sbjct: 4   KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+  A TV+ +G  ++LT  E+++++ L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 239

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++I+D   +   I   L+ E ++V   +  E  +E  K  + D  ++D+ L  I GFE
Sbjct: 5   KIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +R +R       TPV  LS      DKV GL+ GADDYI+KPF+  EL+ARI+A+ RR 
Sbjct: 65  FVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRM 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++      IV  DL +++D   V+++G +++LT  E+ ++  L+  +    ++ +
Sbjct: 125 QLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNV 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+E
Sbjct: 185 LLDKLWGYDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKFRDPGKEE 239


>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 225

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +   ++  L  E + V     GE G++L + +  D IILD  L  + G E
Sbjct: 4   RILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + P+ +L+   +++D+V+GL +GADDY++KPF  EEL+ARIRA++RR++ 
Sbjct: 64  VCQRLRTL-CNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL+++   +        I LT KEY ++EL        LT+EM  + ++  
Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E  ++DV+I  LR+KL +  G    + TV G GYVLRE  
Sbjct: 183 DFGGESNVLDVYIRYLRQKLESD-GEPRLLHTVRGVGYVLRETP 225


>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 231

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +E  LK E F V     G + +EL      D ++LDL L DI GFE
Sbjct: 5   KVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ ++   P+ +LS      DK+ G + G DDY +KPF+  ELV RIRA++RRS+G
Sbjct: 65  VCRRIK-SRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKG 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++    ++   D+ +N   + V V G  ++LT KE+ ++ LL+   N   ++   L  
Sbjct: 124 CKEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D     +   + V I +LR+K+ N      +I+T+WG GY   
Sbjct: 184 IWDSSYYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGYKFE 228


>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 229

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   + L L+ E F V     G + +   +  +FD I+LDL L  + G  +
Sbjct: 4   ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A + TP+ +L+  +   DK+ GL+ GADDYI+KPFN  EL+ARIRA++RR+   
Sbjct: 64  CREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++      +V GDL ++   +  EV G  + LT +EY ++ELL+       T++  L+ +
Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + +DV + ++R+KL        Y+ T WG GY L    
Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229


>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 239

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD ALA  + ++L  E ++V     G   +   +    D ++LD+ L    G  
Sbjct: 15  HVLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGMS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL++GADDY+ KPF  +EL+AR RA +RR   
Sbjct: 75  VCREIRAESG-VPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTP 133

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q+ +  GDL++++ +  V+ QG  I LT  E+ ++  L+ +    L++E  L  ++  
Sbjct: 134 PQQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWGY 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   + ++++V + +LR K+ +       ++TV G GY 
Sbjct: 194 QHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGYR 232


>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
 gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus italicus DSM 15952]
          Length = 235

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 130/231 (56%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G++ +E+     FD I+LD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K++ P+ IL+      D++ GL+ GADDY+SKPF+  E++ARI+AI RR   
Sbjct: 63  ITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMSQ 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +         + L+  G +  +L    V+V+G +I LT KE++++     RK+  + ++ 
Sbjct: 123 NEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++    + + +I+DV I  LR+K+ +      Y++TV G GY  +E 
Sbjct: 183 LLDRIWHFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTFKEP 233


>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 290

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 106/221 (47%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +A  +   L      V     G   +     +  D ++LDL L  + G E
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 78  VCRRMRARHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L+++  A+     G  + LT +E+ ++           ++E  +  ++ 
Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  + V I +LR K+ +       I TVWG GY  
Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRF 236


>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
 gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
          Length = 237

 Score =  291 bits (746), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 8/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++D     +   + V I KLRKK+        +I+T+WG GY       +E
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGYKFVGEKHEE 237


>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 239

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +   LK E + V      E+ +++ +  E D  I+D+ L  + GFE+
Sbjct: 6   ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGMDGFEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +    TPV  LS  S   DKV GL+ GADDYI+KPF+  E++ARIRA+ RR +
Sbjct: 66  VRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRRIQ 125

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ+       I+  DL ++ +   V V+   ++LT  E++++  L+  +    ++++ 
Sbjct: 126 QSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+   A    YI TV G+GY  R+  K++
Sbjct: 186 LDKLWGYDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKFRDPGKED 239


>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  LA  IEL LK E + V V   G  G+   +    D I+LD  L  I G E
Sbjct: 4   HILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      P+ +L+    I D+V GL +GADDYI KPF+ EEL+AR+RA +RR+  
Sbjct: 64  ICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +    +   DL +N  ++ V      I LT KE+ ++E L       LT+E  L  ++  
Sbjct: 124 NNADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V++  LR KL N    K  I+TV G GYVLRE
Sbjct: 184 DFMGDSNIIEVYVRYLRLKLENN-QEKRLIQTVRGIGYVLRE 224


>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   +++ L  E F V     G + + L K   +D ++LDL L  + G  
Sbjct: 3   KILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV IL+      D+V GL+ GADDYI KPF+  E+VAR++A++RR   
Sbjct: 63  ICKEIRKFS-QVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + L+   DL +N +++ V V+G  I LT +E+ ++  L+       ++E  L
Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++      +++ +D  I +LR KLS   G +  I TVWG GY   
Sbjct: 182 TNVWGYDYFGDLRTVDTHINRLRDKLSVN-GARQPIATVWGVGYKFE 227


>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 225

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  IEL LK E +N+ V + G  G+   +    D I+LD  L  I G E
Sbjct: 5   RILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR++ 
Sbjct: 65  ICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNKE 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   DLS+N + + V      I LT KE+ ++E L       L+++  L  ++  
Sbjct: 125 ENPDLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 185 DFMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225


>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K ++  I+  L+ E + V     GEDG+++     FD IILD+ L    G 
Sbjct: 1   MKILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR  K +TPV +L+   S+ED V GL SG+DDY++KPF   EL+AR+RA+VRRS 
Sbjct: 61  SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++     V  +   I LT KEY ++E      N  LT+ M   H++D
Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV++  LRKK+ +    K  I TV G GY+L+E 
Sbjct: 181 YTFDSFTNIIDVYVNYLRKKI-DREADKKLIHTVRGVGYILKEE 223


>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
 gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
           [Thermosediminibacter oceani DSM 16646]
          Length = 229

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   I+  L+ E F V   D G + ++L +  +FD ++LD+ + ++ GF+
Sbjct: 5   RILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  KI  PV  L+  +   DK+ GL+ G DDYI+KPF+  EL ARIRA++RR++ 
Sbjct: 65  VLRRIRE-KIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A +++  G + ++L+ KT  + G  + LT  E++++ +L     T +++   L  ++
Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G  E   + +D  I  LRKKL +      YI+TV+G GY L
Sbjct: 184 GGYYEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225


>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 83/229 (36%), Positives = 126/229 (55%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K +A  +   L  E F V V   G  GI   +    D +ILD+ L  + GFE
Sbjct: 9   RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   ++ D+V GL+SGADDY+ KPF  EEL+ARIRA++RR   
Sbjct: 69  VCRRLRA-GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +    L +N  ++ V + G  + LT KEY+++EL        LT+++  + ++
Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 E  II+V++  LR+KL   +G    + TV G GY+LRE    E
Sbjct: 188 GYDFGGESNIIEVYVRYLRQKLEE-SGEGRMLHTVRGAGYILREQPYGE 235


>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 229

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E+F V     G +  ++   Y  D I+LD+ L    GF+
Sbjct: 4   KILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+  LS      DKV GL+ GADDYI+KPF+  E+VAR++A++RR + 
Sbjct: 63  ICREIR-DKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +  ++   L ++L+A+TV+V    + LT KE+ ++ L++       T+E  LN +
Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E + +D  I ++R+K+    G   Y+ TVWG GY   
Sbjct: 182 WGYDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGYRFE 225


>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  290 bits (745), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+ +D++ +   + L L++E F V   + G+  +++ K    D ++LDL +  + G
Sbjct: 1   MKTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V + LR  +   P+ +L+      D+V GL  GADDYI KPF+  ELVAR++A++RR+
Sbjct: 61  WTVCKMLRRER-KIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRA 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G    H   ++      +N   + +E+ G  I+LT KE++++ +L+       +++  L
Sbjct: 120 EGIGEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      + + +D  I +LR KL        YI+T+ G GY   
Sbjct: 180 EMVWGFDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGYKFE 226


>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 236

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 131/233 (56%), Gaps = 9/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V+V   GE+ +   +  + D I+LD+ L    G EV
Sbjct: 5   ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 65  CREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHATA 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +G   + IV GDL+++ D+  V  +  +I LT +E+++I  L+      +T+E  
Sbjct: 124 PAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      YI T  G GY L+   +D
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYLKAGEED 236


>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
 gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
          Length = 237

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 236

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E ++V V + G + +E  + +  D I+LD+ L  + G E
Sbjct: 5   KILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLMDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +L+   S  D V GL+ GA+DY++KPF+  EL+AR++A +R    
Sbjct: 65  VCREVRKTS-KVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVNT 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G+L ++ ++ TV  Q  +I LT +E++++  L+      +T+E  
Sbjct: 124 VEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREHL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV + +LR+K+ +      YI T  G GY L++   +
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVEDNPSTPIYIMTRRGVGYYLQDGENE 236


>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
 gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
           12442]
          Length = 237

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L    +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++L+    L+++++   V V G  I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++D     +   + V I KLRKK+         I+TVWG GY       +E
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGYKFVGEKNEE 237


>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ + +   ++ + ++LDL L  + G++
Sbjct: 6   RILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELR-SGSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DL VNL   +V   GH + +  KE +++  L+   N   T+E
Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+H++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 QLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHTNWA--ITTVWGIGYKFE 232


>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
 gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
 gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
 gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 237

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L    +++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
 gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
          Length = 229

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G DG+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +R S+ 
Sbjct: 64  VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQK 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + +   +  G LS+N   + V   G  I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 ASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  +R+KL  A      I+TV G GYVL+EN
Sbjct: 184 GFDYYGDTNVVDVYIRYVRQKLEIANVTP-IIQTVRGVGYVLKEN 227


>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 128/232 (55%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   I+  L+ E + V     G   ++L +  + D IILD+ L +  G  V
Sbjct: 4   VLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  + +   P+ ++S      DK+ GL+ GADDY++KPF+  ELVAR++A +RRS 
Sbjct: 64  CRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSE 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +V G+L ++ D   +E+ G + +LT KE+++I  L+ +     +++ 
Sbjct: 124 EVETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDY 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++      + + +DV I  +R+KL      + YIETV G GY  +E++
Sbjct: 184 LLEQIWGYDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRFKESS 235


>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
 gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1322]
 gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
 gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
 gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
          Length = 236

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
           regulator [Teredinibacter turnerae T7901]
 gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Teredinibacter turnerae T7901]
          Length = 233

 Score =  290 bits (745), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED + +   I L L++ N+ V     G+ G+ L     FD IILD+ L  I G ++
Sbjct: 5   ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGIDGLQI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A + TP+ +L+   S  D+V GL+ GADDY++KPF+  EL AR+RA++RR   +
Sbjct: 65  CQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVAFN 124

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q          +V GDLS+N +   V +    I LT KE+ ++  L+       +++  
Sbjct: 125 TQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++          ++  I +LR KL   A    Y+ TVWG GY   E
Sbjct: 185 LSAVWGYHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKFYE 233


>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL S4-171]
          Length = 240

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    ++
Sbjct: 127 KAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 237


>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  IE  LK   ++V     GE   E+ K +  D I+LDL L  + G +
Sbjct: 4   KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    + P+ +L+ +  + DK+ GL +GADDY++KPF+ +EL++RI+AI RR + 
Sbjct: 64  VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +    G L+V  + + V + G  I LT KE++++  L   +   L+++  L+ 
Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     + +I+DV I  LR K+   A    YI TV   GY L
Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227


>gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris HaA2]
 gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas
           palustris BisB5]
          Length = 233

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  +D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNFIETVWGRGYVLREPTEDD 228


>gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 231

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 170/224 (75%), Positives = 197/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDLILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATEGKNYIETVWGRGYVLREP 224


>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 249

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F V     G++ ++       D ++LD+ L D+ GF V
Sbjct: 17  LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTV 76

Query: 63  LRALR------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           +R LR       +    PV  L+      DKV+GL  GADDY++KPF+ EEL+ARIRAI+
Sbjct: 77  VRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAIL 136

Query: 117 RRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G A    +V  DL+++  A  V   G  + L+  E++++  L       ++K   L
Sbjct: 137 RRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQIL 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222
           +H++      ++ I++ +I  LR+KL +  G G   I TV G GY LR
Sbjct: 197 DHVWAYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYALR 244


>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 126/224 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  + H +   L  E++ V     GE+ +      E+D ++LD+ L  + G 
Sbjct: 1   MQILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V +ALR    S P+ +L+    + DKV GL +GADDY++KPF+ +EL ARIRA+ RR +
Sbjct: 61  AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  GDLS++   KTV+     I LT +EY ++E      N  LTK   L H++D
Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I++ ++  LRKK+  A      I T+ G GY+LRE 
Sbjct: 181 YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYILREE 224


>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 231

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   ++  L+ E F+V     G + +   K  + D +ILDL L  I G E
Sbjct: 4   KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+  A TV+ +G  ++LT  E+++++ L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     E   + ID  I  LR+K+ +      YI+TV+G GY   +
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228


>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 236

 Score =  290 bits (744), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 133/231 (57%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G+ G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A+S+          I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
          Length = 236

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 NLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 238

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ V   + GE  + L    ++D I+LD+ +  + G E
Sbjct: 6   KILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K +TPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCQELRKTK-ATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L+++ DA  V V G  I LT KEY+++  L+   +   ++E 
Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLRENAK 226
            L  +++     +++ +D  I +LR+KL   +      I TVWG GY      +
Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGYKFEAQKE 238


>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 247

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D++ +   ++  L  E F   +   G   + L +   +D I+LD+ L  + G E
Sbjct: 11  RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 71  VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   H +       L +  +   V      + LT KEY+++  L    N TLT+E 
Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      E +++DV I KLR+K+ +      YI+T+ G GY  +E   D T 
Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 247


>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
 gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 236

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 236

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 130/232 (56%), Gaps = 15/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE+ +     +  D I+LDL L  + G+E
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVR-HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      ++ ++   DL+VNL   +V  +G+ + +  KE +++  L+   N   T+
Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
           E  L++++      + + +DV I +LR+K+    G  ++ + TVWG GY   
Sbjct: 185 EQLLDNIWGYEYVGDTRTVDVHIKRLREKI---PGNTHWSLSTVWGIGYKFE 233


>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
           10507]
          Length = 242

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E ++  + + GE  +   + +  D I+LDL L  + G++
Sbjct: 16  KILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDGYQ 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +LS      DKV GL+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 76  VCREIRHTS-DVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +  +   DL++NL   +V     R+ +  KE +++  L+   N   T+E  L
Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +    K  I TVWG GY   
Sbjct: 195 DHIWGYEYIGDTRTVDVHIKRLREKIKDH--DKWSIATVWGIGYKFE 239


>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 228

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  +LD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + L+   DLS+N   + V      I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR KL      K  I TV G GY LRE
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEEH-NEKRLIHTVRGVGYALRE 224


>gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
 gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A]
          Length = 233

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 169/228 (74%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHDDE 228


>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 232

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V   + GE+G+E     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR   
Sbjct: 65  VCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTV 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  ++ +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229


>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 228

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    +ETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226


>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
 gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
           25986]
          Length = 240

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  IE  + ++FD ++LDL L  IPG  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    IED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRTIRDTS-DVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    ++  GDL +++    + V+G  + LT  E++++  L+        +   +  +
Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                E   + ID  +  LR KL +      ++ TV G GY     AK +  +
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAKTDKSD 238


>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
 gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
           13280]
          Length = 250

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 18  KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 78  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  GDL +++    + V+G  + LT  E++++  L+        +   +  +
Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                E   + ID  +  LR KL +      ++ TV G GY     A+ +  +
Sbjct: 197 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQSDKAD 249


>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis V583]
 gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
 gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX0104]
 gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis HH22]
 gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis ATCC 29200]
 gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis R712]
 gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis S613]
 gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
           faecalis 62]
          Length = 236

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +   L+ E + V  ++ G++G EL    ++D IILD+ L  + G E
Sbjct: 3   KVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +ALR  KI TP+ IL+      DK+ GL+ GADDY++KPF+  E++AR++AI RR + 
Sbjct: 63  ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++ +V G++ V+     V V+   I LT KE++++     RK+  + +E
Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + +I+DV I  LR K+        Y+ TV G GY  +E  +
Sbjct: 183 TLLERIWQYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRFQEPKR 236


>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
 gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus pneumoniae BS455]
          Length = 235

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 234


>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 246

 Score =  290 bits (744), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 124/229 (54%), Gaps = 2/229 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   +   L+ E F V     G   ++       D +ILD+ L DI GFE
Sbjct: 7   RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L    + TPV  L+   + EDKVRGL  G DDY++KPF+  ELVAR+ AI+RR+RG
Sbjct: 67  VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S +V  DL ++ D   V   G  I LT  EY+++  L       LT+   L+H++D 
Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWDY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
               +  +++ +I  LRKK+   A G   I TV G GY LR   ++E  
Sbjct: 187 DFGGDSGVLETYISYLRKKI--DAEGPPLIHTVRGVGYTLRLPRENEKS 233


>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
 gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
          Length = 233

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K   P+ +LS    + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCRELRA-KSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    L++NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +  G    + TVWG GY   
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPGWG--LSTVWGIGYKFE 231


>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 238

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 132/230 (57%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + +++ L+ E ++V     G++ +E    +++D I+LDL + ++ G E
Sbjct: 6   KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCQKLRKQK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   LS++ DA  V V    I+LT KEY+++  L+   +   ++E 
Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  I +LR+KL+  +    + I TVWG GY   
Sbjct: 185 LLKDVWNYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFE 234


>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 232

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 131/228 (57%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDK + +S+ L+L  E + V V   G + +   K +  D ++LD+ L +  G+E
Sbjct: 3   KILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DKV GL+ GADDYI+KPF  +EL+ARI A++RR + 
Sbjct: 63  VCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  IV     ++L  +TV+V+G  ++L+ +E+++++LL        T++M + H++
Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +DV+I  LR+K+ +      YI TV   GY  +E  ++
Sbjct: 182 GENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNEN 229


>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
 gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
          Length = 277

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  +   L    + V   + G   ++    +  D ++LDL L  + G E
Sbjct: 21  RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+++++RR+R 
Sbjct: 81  VCRRLRENGP-VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRARP 139

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    L ++  A+     G  + LT +E+ ++  L         +E  +  ++ 
Sbjct: 140 GPGIRPLHAAGLVLDPAARRATKNGAELALTLREFDLLAFLLAHPRKVFGREELMREVWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                ++  + V + +LR K+ +       I+TVWG GY      
Sbjct: 200 WDF-GDLSTVTVHVRRLRGKVEDDPARPLLIQTVWGVGYRFEPTG 243


>gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 233

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 165/226 (73%), Positives = 193/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV KI+TPV ILSG   IE KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLDAKTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AA GK+YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAADGKHYIETVWGRGYVLRDPAE 226


>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 228

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +    ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    +ETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226


>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
 gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. RCC307]
          Length = 241

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF----DAIILDLGLTDI 57
           R+L++EDD  +  +I   L SE F V     G   +E  K        D ++LDL L  +
Sbjct: 13  RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +V R +R    STP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++R
Sbjct: 73  SGLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLR 132

Query: 118 RSRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RS  +    A+ ++   ++++  +   V   G  ++L+ KEY+++E+         +++ 
Sbjct: 133 RSARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDK 192

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 193 LLERVWGIDFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF 240


>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
 gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
          Length = 229

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  L  ++  V     GE+ +E+ K  E+D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 64  VCQRIREFS-NMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A             L ++ D++ V V+   + LT KEY ++ELLS   N   ++E  LN
Sbjct: 123 RATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +V+ +DV I +LR+K+    G   YI T WG GY  ++
Sbjct: 183 IVWGYDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYFQD 229


>gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234]
 gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG+L VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+NAAGG NYIETVWGRGYVLRE    +  +YLETA
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANAAGGANYIETVWGRGYVLREP---DGNDYLETA 233


>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 249

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 111/229 (48%), Gaps = 3/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    + V   + G   +     +  D ++LDL L  + G E
Sbjct: 22  RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGLE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 82  VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 140

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +    L+++  A+     G  + LT +E+ ++           ++E  +  ++ 
Sbjct: 141 VTAPRPLHASGLALDPAARRATKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                ++  + V + +LR K+ +       I+TVWG GY      + E 
Sbjct: 201 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFGTTPRQEA 248


>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L++E + V     G +  ++ K  +   I+LDL L  I G E
Sbjct: 5   KILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISGME 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R        P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A  +    G+L+++     V     ++ LT KE++++ +L   +   LT+++ L+ +
Sbjct: 125 NTVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +DV I  LRKK+ +      YIET+ G GY    + +
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGYRFSYDEE 232


>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDYI+KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     E   + ID  I  LR+K+ +      YI+TV+G GY   +
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228


>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
           43243]
          Length = 231

 Score =  290 bits (743), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 119/227 (52%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F       GE  +     +  D +ILDL L  + G++
Sbjct: 6   KILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVRRNN-NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    LS+NL   +V   G  + +  KE +++  L+   N   T+E  L
Sbjct: 125 PKADTAADAKTVEYPGLSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +H++      + + +DV I +LR+K+ +    +  I TVWG GY   
Sbjct: 185 DHIWGYEYLGDTRTVDVHIKRLREKIKDH--EQWSIATVWGIGYKFE 229


>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
 gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
           lugdunensis HKU09-01]
          Length = 233

 Score =  289 bits (742), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
 gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. R11]
          Length = 239

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 161/228 (70%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRDPQDDQ 228


>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 127/231 (54%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L+ E F+V V   G + +E  K +    I+LD+ L    G EV
Sbjct: 6   ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR++  
Sbjct: 66  CREVRKEH-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQRS 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A+        I  G LS+  DA  V  +G  I LT +E+++I  L+      +T+E  L 
Sbjct: 125 AEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHLLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      +V+ +DV + +LR+K+ +      +I T  G GY  R+  ++
Sbjct: 185 AVWGYDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYFRQPDQE 235


>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 231

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   I+  L    F V     G   +   +    D IILDL L  + GFEV
Sbjct: 6   ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    +  + +L+      D+V+GL+ GADDY+ KPF+  ELVAR+RA+ RR R  
Sbjct: 66  CRQLRTFSDAY-ILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPRQS 124

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S +  G L+++ ++ TV + G  I+LT  EY+++ +L+       ++   L+ +
Sbjct: 125 GYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++V I  LRKKL +      +I TV   GY   E
Sbjct: 185 WGNNYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGYRFGE 229


>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-NVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGS 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I  GDL ++ + + V + G  I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 DHEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+        Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYFQ 228


>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
 gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
          Length = 233

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGNDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
 gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation
           protein [Hoeflea phototrophica DFL-43]
          Length = 233

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 177/236 (75%), Positives = 205/236 (86%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV   R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL+ +AGGKNYIETVWGRGYVLRE   DE+ E LE+A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATSAGGKNYIETVWGRGYVLRE--PDES-EILESA 233


>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 238

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  +      ++  +ILD+ L  + G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K STP+ +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +  + IV   L +  DA  V   GH I LT KEY+++  L+   +   ++E 
Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKLE 235


>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 232

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
 gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+  L+ +   V     GE+ +E  K  ++D I+LD+ L  + GFE
Sbjct: 3   KVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    S P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-SVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAH 121

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           H      +  ++    L ++ +++ V + G  ++LT KE+ ++ELL    N   ++E  L
Sbjct: 122 HDVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++      + + +DV I +LR+K+    G  +Y+ T WG GY  +
Sbjct: 182 NTVWGYDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYFQ 228


>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
 gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
 gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
          Length = 235

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 132/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         I  G ++++ +       G R+ LT KE++++   + R   TL+++ 
Sbjct: 123 QPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRDA 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            LN ++      E +++D+ +  LR K+       +Y++TV G GY +    +
Sbjct: 183 LLNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 235


>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 226

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++   L+ E F V V   G D +E+      D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    + PV +L+   S  DKV GL+ GADDY++KPF+  EL+AR+RA++RR   
Sbjct: 63  VCRELRARS-NVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGD 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S++  G + ++++   V V G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 AEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV I +LR K+        YI TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGYKFEP 226


>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 239

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 12  ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGIHM 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 72  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 130

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 131 NGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 191 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 238


>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria seeligeri FSL N1-067]
          Length = 236

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    ++
Sbjct: 123 KAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
 gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
          Length = 235

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria monocytogenes FSL F2-208]
 gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
          Length = 246

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 13  KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 73  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 132

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 133 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 192

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 193 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 243


>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
 gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
          Length = 237

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L     ++ +ILD  +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis
           2.10]
 gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 239

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 160/228 (70%), Positives = 187/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228


>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
 gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
          Length = 229

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DDK +   + L L+ E + V + + G++ +EL +  + + I+LD+ L  + G++
Sbjct: 5   KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K   P+ +L+    + DKV GL+ GADDYI KPF  +E+VARI+A++RR+  
Sbjct: 65  VCREIR-KKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G A   +    LS+NL    ++V G ++    KE ++I  L+   N   T++  L+ +
Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LR+KL      K  ++TVWG GY   
Sbjct: 184 WGFDYYGDSRTVDVHVKRLREKLEGV-SDKWALKTVWGVGYKFE 226


>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 231

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     E   + ID  I  LR+K+ +      YI+TV+G GY   +
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKFGD 228


>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 228

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + +DV I +LR+KL    G    +ETVWG GY   
Sbjct: 186 GYDYPGYSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226


>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 237

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G +G ++   Y+ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V  +++ LT KE++++ +++       ++   
Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 229

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +   L  E +NV     G++ I +    + D I+LD+ L    GF 
Sbjct: 4   KILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR  KI++P+ +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCKKLRE-KITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  + +I  GDL ++L +  V  +G  + LT +EY++I+ LS +     T+E  L  
Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +++ +DV + +LR+K+ +      YI T  G GY  R+ 
Sbjct: 183 VWGYEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYFRKQ 229


>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 235

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 64  VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTSK 123

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q            V G L+V  D   V    H + LT KE++++  L    N TLT+E
Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234


>gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
 gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM
           12614]
          Length = 243

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 173/224 (77%), Positives = 195/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 14  MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 74  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE 
Sbjct: 194 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREP 237


>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
 gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus thermophilus ND03]
          Length = 235

 Score =  289 bits (742), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 224

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED ++LAH+I   L+   ++  +T  G++G+       +D IILD+ L  I G 
Sbjct: 1   MRILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R+  I TPV  L+   SIED+V GL +GADDY+ KPF+ +EL+ARIRA++RR  
Sbjct: 61  NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   DL ++ ++  V   G  I LT KEY ++E L+  K   LT+     H+++
Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I+DV+I  LR+K+ +    +  I T+ G GY+LR+ 
Sbjct: 181 YDFEGTSNIVDVYIRYLRRKI-DDGFPEKLIYTIRGVGYMLRDE 223


>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 137/223 (61%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K LA+ I+   + E F V +   GEDG+   + Y +D I+LD+ L  I G 
Sbjct: 1   MRILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    +TPV +L+   +++DKV GL SG+DDY++KPF+ EEL++R +A++RR  
Sbjct: 61  TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I   +L ++   KTV+     I L+ KEY ++E L+  KN  L++ M + H+Y+
Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDVFI ++R K+      K  + T+ G GY L+E
Sbjct: 181 EEFDFDSNVIDVFINRIRNKIDKNF-DKKLVHTIRGMGYALKE 222


>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 225

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL LK E +NV V + G  G+   +  + D I+LD  L  + G ++
Sbjct: 6   ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR++  
Sbjct: 66  CKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+   DL++N + + V      I LT KE+ ++E L       LT++  L  ++   
Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWGYD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEKEKRIIQTVRGVGYVLRD 225


>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 238

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  +      ++  +ILD+ L  + G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLPGMDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR  K STP+ +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQVK-STPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +  + IV   L +  DA  V   GH I LT KEY+++  L+   +   ++E 
Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLE 235


>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
 gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
 gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N3-165]
 gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
 gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
          Length = 240

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 127 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 238

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 131/235 (55%), Gaps = 15/235 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL  ++E  LK + + V V   G   ++L + ++ + I+LD+ L  + GFE
Sbjct: 4   KILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR   ++TPV +L+  +   D+V GL+ GADDY++KPF+  EL+AR++A++RR   
Sbjct: 64  LCRRLRQE-MNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      ++  ++  +++G+L +NL  + V + G  + +  KE++++  L   +  
Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  L+      + + +DV I  LR+K+         I TV G GY   
Sbjct: 183 VLSRDYLLKELWGWDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGYRFE 237


>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
 gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
          Length = 236

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T
Sbjct: 122 IETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 233

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREPHEHE 228


>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 242

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G   + L +  E D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+      DKV+GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 71  VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSA 130

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++   DL ++ D+  V   GH + L+  E++++  L L     L+K   L+H+
Sbjct: 131 GLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-----KNYIETVWGRGYVLRENA 225
           +      +  I++ +I  LR+K+   A          I T  G GY+LRE +
Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLLREPS 242


>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
 gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
           DSM 5476]
          Length = 238

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 129/236 (54%), Gaps = 11/236 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +   ++  +++E F+    + GE  ++L      DA+ILDL L  I 
Sbjct: 1   MKKTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGID 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EVL+ +RV     + PV +L+  S   D+V GL+ GADDY+ KPF   ELVAR++A++
Sbjct: 61  GLEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVL 120

Query: 117 RRSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR+    +         +  G + ++   +TV+ +G  + LT KE+ ++ L +      +
Sbjct: 121 RRAEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVI 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           T++  L  ++      E + +DV I +LRKK+        YI TV G GY LRE+A
Sbjct: 181 TRDEILTKIWGYDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKLREDA 236


>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 235

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 127/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G+ G++L    +FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLEP 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  GD+  +L    V V+G +I LT KE++++     RK   + ++ 
Sbjct: 123 RGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRDT 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LN +++   + + +I+DV I  LR+KL        Y+ TV G GY  +E 
Sbjct: 183 LLNRIWNFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKFQEP 233


>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
 gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
 gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
 gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
           [Lactobacillus crispatus MV-1A-US]
 gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
 gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 128/236 (54%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S+      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ +++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSEE 238


>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 226

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F V     G+  +   +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+      DKV GL+ GADDYI KPF+ +ELVAR++A++RR  G
Sbjct: 66  LCKEVRKFS-KVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEG 124

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +   DL V+L    V  +G  I LT KE +++  L    N   T++  L +++ 
Sbjct: 125 ESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +DV I +LR+K+      K  + TVWG GY    N
Sbjct: 185 YDYMGDSRTVDVHIKRLREKVGEGPNWK--LTTVWGVGYKFEVN 226


>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
 gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus vestibularis F0396]
 gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
          Length = 235

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
 gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
           H7858]
 gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-071]
 gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
           HPB2262]
 gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-194]
          Length = 240

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 127 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 237

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 133/223 (59%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L  E ++V V   G + +++ +  + D +ILD+ +  + GF 
Sbjct: 12  RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR  +   PV +L+   ++ED+V+GLQ G+DDY++KPF+  ELVAR+ AI+RRS  
Sbjct: 72  LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSGQ 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + IV GDL ++ DA  V   GH I LT  E++++  L L  N  ++K   L+H++
Sbjct: 132 GTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I++ +I  LRKKL     G   I+TV G GY LR
Sbjct: 192 QYDFGGDANIVETYISYLRKKL--DGYGPPMIKTVRGVGYSLR 232


>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL J1-023]
          Length = 240

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 127 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 264

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + ++       D ++LD+ +  + G  
Sbjct: 34  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 94  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 153

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 154 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 213

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR   +
Sbjct: 214 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRGGGE 264


>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 224

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   +  +D IILD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  TPV +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAIVRR  
Sbjct: 61  EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223


>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 247

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++ +A  +   L    F V +   G   + L      D ++LD  L  + G E
Sbjct: 17  RILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDGVE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +S PV +L+ + + +D++ GL+ GADDYI+KPF+  ELV R+R+++RRS  
Sbjct: 77  VCRRLRQT-MSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRRSVQ 135

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +      +N  A+TV   G  + LT +E+ ++     R N   ++E  +  ++
Sbjct: 136 EFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIRAVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++  + V + +LR+K+         ++TVWG GY L
Sbjct: 196 GWDF-GDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRL 236


>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
 gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
 gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
 gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
 gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
 gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
 gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
 gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
 gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
 gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
 gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
           A9763]
 gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
 gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
 gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
 gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
 gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
 gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
 gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
 gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
 gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus C101]
 gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus D139]
 gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A10102]
 gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A9765]
 gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus A8117]
 gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
           [Staphylococcus aureus subsp. aureus H19]
 gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus aureus subsp. aureus ST398]
 gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
 gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus M809]
 gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
 gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
 gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 235

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 6   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 66  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 125 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 234


>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria innocua FSL S4-378]
          Length = 240

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 127 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 230

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A+ +   L+ E + V     G + +E  +  + D I+LD+ L ++ GF+V
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LRA+R A    PV IL+      DKV GL+ GADDY++KPF+  ELVAR++A +RR+   
Sbjct: 65  LRAIRQASG-VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     V  DL ++L   TV   G  I LT +E+Q++ +L+       T++  ++ 
Sbjct: 124 LREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL        Y+ T  G GY +R
Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228


>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 233

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  I G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKIFGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIREFS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V   G  + LT  E++++  L        T+E  + 
Sbjct: 125 GEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
          Length = 239

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 10  KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 70  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 128

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 129 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 189 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 238


>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 233

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I   L+ E F+  ++  G   +E+ +    D IILDL L  + G 
Sbjct: 1   MNILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGL 60

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D++ GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S  +G       T   +V++D +    Q       + LT  E+ ++           ++ 
Sbjct: 121 SLRQGGQTQTHQTPHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++ L+      + +++D  + +LRKK+        +I+TV G GY   +N 
Sbjct: 181 QLIDKLWGDDFFGDERVVDTHVARLRKKIEPDPSHPTFIKTVTGVGYKFEDNP 233


>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
 gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. equi 4047]
 gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 240

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D++ +   ++  L  E F   +   G   + L +   +D I+LD+ L  + G E
Sbjct: 4   RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR+  
Sbjct: 64  VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +       L +  +   V      + LT KEY+++  L    N TLT+E 
Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++      E +++DV I KLR+K+ +      YI+T+ G GY  +E   D T 
Sbjct: 184 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELKNDRTS 240


>gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged
           helix family [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 148/224 (66%), Positives = 181/224 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLVVEDDRMMAQVIETMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR ++I TPV ILSG++  + K++GL  GADDY++KPF+K ELVARI+AIVRRS+
Sbjct: 61  EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG LSVNLD +TV+V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY 
Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+ 
Sbjct: 181 GIDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDP 224


>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
          Length = 233

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 234

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           R+L++EDD A+   +E  L  E         GE  +EL      FD ++LD+ L  + G 
Sbjct: 3   RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62

Query: 61  EVLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            V R LR +     + PV +L+        V GL+ GADDYI+KPF+  +L +R+RA +R
Sbjct: 63  SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122

Query: 118 RSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R R +AQ+      +    L ++L  + V  +G ++ LT +E++++ LL+       ++E
Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++HL+ G    E +  DV I  LR+K+        YI+TV G GY   E
Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233


>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 238

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+  +   I+  L++  F V V D GED +E       D  ILD+ L  I G EV
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGIDGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+AR++A+ RR  
Sbjct: 66  CRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFRRVN 125

Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +  I     G++ ++   + V      + +  KE++++++L L K   L++E  L+ 
Sbjct: 126 TTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E + +DV I  LR+K+ +      YIETV G GY   +   D
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRFTDKNPD 235


>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 232

 Score =  289 bits (741), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++++   I L L +  + V     GE+ ++  K  + D ++LD+ L  I GF
Sbjct: 6   IKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLPGIDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +      T V +L+      DK+ GL+ GADDYI KPFN  EL ARI+A++RR  
Sbjct: 66  EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  ++   +  G L +++ A  +      I LT  E+ +++     +   L +   LN +
Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + K +DV I +LR+K+ +     +YI+TVWG GY  ++ +
Sbjct: 186 WGENYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYRWQQES 232


>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   + L L+ E ++V  T  G D I+  + ++ D ++LD+ L  + G++
Sbjct: 5   KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   PV +++      DKV GL+ GADDYI KPF+ +E+VARI+A++RR  G
Sbjct: 65  VCREIR-KKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSG 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L VNL    + V G  +    KE +++  L+   N   T++  L+ +
Sbjct: 124 AENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I +LR+KL      +  ++TVWG GY   
Sbjct: 184 WGFEYYGDSRTVDVHIKRLREKLEGK-SDQWSLKTVWGVGYKFE 226


>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
 gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
 gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
 gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
           RP62A]
 gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
 gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
 gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU144]
 gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU028]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 226

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ +++  +  ML++E F V V D G   +E    +  D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQIRA-KSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G + +++D   V V G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+    G   ++ TV G GY   
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGYKFE 225


>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 229

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL I+D++ +   I+  L+ E ++V+    G + I   K  + D +ILDL L  + G 
Sbjct: 1   MKILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R      P+ +L+     +DKV G   GADDY++KPF+  EL  R++AI+RR++
Sbjct: 61  EICSKIRAIS-KVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRTK 119

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +     GDL ++  +  V+  G  ++LT  EY+++ +++   N   T+   + 
Sbjct: 120 DDMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +     E   + ID  I  LR+K+ +      YI+TV+G GY   E 
Sbjct: 180 KVMGYDFEGFDRTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEE 227


>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D I+L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYT 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   L+      +T+E  
Sbjct: 123 QPAQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 232

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
 gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130]
          Length = 234

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 170/231 (73%), Positives = 200/231 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 2   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+ELVARI+AIVRRS+
Sbjct: 62  EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRRSK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 122 GHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL++A GG N+IETVWGRGYVLRE    E  E
Sbjct: 182 GMDEPELKIIDVFICKLRKKLASATGGTNFIETVWGRGYVLREPEGAELAE 232


>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 234

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L +  + V  ++ G D +++ K      I+LDL L  + GF+
Sbjct: 5   KILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLPGLDGFD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + ++  K +    + +L+      DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A    +   +  L ++ D   V +   ++ LT KE+ ++++L   K   L +E  L+
Sbjct: 125 YPGADIENNSYESKGLKIDFDRHEVFINNQKVELTLKEFDLLKILIKNKGKILQRETLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E + +DV I  LRKK+        +IET+ G GY    
Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231


>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 238

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 9   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 69  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 127

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 128 QPAQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 188 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 237


>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 225

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 135/226 (59%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED K+LA++I   L+   ++V +   G++G+   +   +D IILD+ L  I G 
Sbjct: 1   MRILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   + TPV  L+   SIED+V GL +GADDY+ KPF+ +EL+AR+RA++RR  
Sbjct: 61  TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL ++ +++ V   G  I LT KEY ++E L+  K   LT+     H+++
Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E    I+DV+I  LR+K+ +    +  I T+ G GY+LR+  +
Sbjct: 181 YDFEGTSNIVDVYIRYLRRKI-DDGFPEKLIHTIRGVGYMLRDEKR 225


>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
 gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQPSE 237


>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
 gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
          Length = 236

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + IE  +    D IILDL L  + G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I++ LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
 gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + ++V     GE+ ++L K   +D I+LD+ L    GFE
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 64  VCQQIRE-YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSK 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +IV G++ ++ +++ V +    I+LT KE+ ++ELL++      ++E  LN
Sbjct: 123 RDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228


>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
           hominis C80]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ V  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 239

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 14/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   ++L  + + F V   + GE  +E    Y  + +ILDL L    G+E
Sbjct: 3   KVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ GL+ GADDYISKPF+ +ELV R + ++RR+  
Sbjct: 63  VCREIRKTS-NVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEA 121

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                       H    I   DL ++  + TV   G RI +  KE +++  L+   N   
Sbjct: 122 ACPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENAK 226
            +E  L  ++      E + +DV I ++R+K+ +     ++ I+TVWG GY      +
Sbjct: 182 NREQLLGQVWGYDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGYKFEVTGE 239


>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
 gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
 gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
 gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
          Length = 237

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     G++ ++L     ++ +ILD+ +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
 gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
 gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E980]
 gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 234

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ TV G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234


>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
 gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
          Length = 237

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE+ + L    +++ +ILDL +  I G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCKKLR-DKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKFV 231


>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +V   + +NL   +V V    + +  KE +++  L+   N   T+E 
Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR K+ +       + TVWG GY   
Sbjct: 185 LLDQIWGYDYMGDTRTVDVHIKRLRAKIKDHPTWS--LGTVWGIGYKFE 231


>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
 gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
 gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
 gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
 gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
 gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
 gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
 gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
 gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
 gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
 gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
 gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
 gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
 gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
 gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
 gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
 gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
 gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
 gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
 gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
 gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED98]
 gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
           A9754]
 gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
 gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
           aureus ED133]
 gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
 gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
           subsp. aureus 21189]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 5/232 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+  +   I+  L++  F V V D GED +        D  ILD+ L  I G EV
Sbjct: 6   IFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGIDGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  ELVAR++A+ RR  
Sbjct: 66  CRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFRRVN 125

Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +  I     G+++++ + + V      + +  KE++++++L L K   L++E  L+ 
Sbjct: 126 TATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHLLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++      E + +DV I  LR+K+ +      YIETV G GY   +   D  
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRFTDKNPDSA 237


>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus LMG 18311]
          Length = 235

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
 gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
          Length = 226

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ALA  + ++L+ E F   +   G   IE  +  + D ++LDL L    G +
Sbjct: 4   KILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDYI KPF  +ELVARIRA +RR   
Sbjct: 64  VCREIRAES-RVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GD+++++ A TV   G  I LT  E+ ++  L+ +     T+E+ L H++  
Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGYK 221


>gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 230

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 173/224 (77%), Positives = 195/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDNATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG + IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREP 224


>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
 gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
 gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
 gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
           SW]
          Length = 234

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 151/234 (64%), Positives = 192/234 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ++A SIELML SE + V  T+LGEDG+E+ K Y++D IILDL L DI G+
Sbjct: 1   MRVLLVEDDPSMAKSIELMLNSEGYIVDSTELGEDGLEIGKLYDYDIIILDLMLPDIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+++TP+ ILSG+S ++ K++GL  GADDY++KPF+K ELVAR++AIVRRS+
Sbjct: 61  EVLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S+I TG L+VNLDA+TVEV G  +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           G DEPE+KIIDVF+CKLRKKL+ A  G+NYIETVWGRGYVLR+  + +  +   
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLTTATKGENYIETVWGRGYVLRDPTEVQKPQVAS 234


>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
           pseudintermedius ED99]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+V   G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYT 122

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +     +YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGYFLQQH 232


>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYA 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ +  +A +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
           ACN14a]
 gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
           [Frankia alni ACN14a]
          Length = 358

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 131/230 (56%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   + L + +  DA++LD+ L D+ G E
Sbjct: 20  RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+  
Sbjct: 80  VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 139

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    + +V GDL+++ +++ V   G  +HLT  E++++          L+K   L+ 
Sbjct: 140 TTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++     +  ++++++  LRKK+   AG    I T+ G GYVLR    D
Sbjct: 200 VWNYDFGGQANVVELYVSYLRKKI--DAGRPPMIHTMRGAGYVLRPAETD 247


>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
 gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
 gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
 gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
           D11]
          Length = 224

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   +  +D IILD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  TPV +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAIVRR  
Sbjct: 61  EVVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGNSKPLIHTKRGLGYVLKED 223


>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii
           HTCC2633]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 163/227 (71%), Positives = 199/227 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A A  IELMLKSE FN YVTDLGE+G++L K Y++D I+LDL L D+PGF
Sbjct: 1   MRVLLIEDDRATAQGIELMLKSEGFNTYVTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ ILSG + I++KVRGL SGADDY++KPF+KEEL+ARI A+VRRS+
Sbjct: 61  DVLKTLRVAKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL++A  G ++IETVWGRGYVLR+ + +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATSGDHHIETVWGRGYVLRDPSDE 227


>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 233

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +   + Y    I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K STP+ +LS    + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIRA-KSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    L++NL   +V   GH + +  KE +++  L+   N   T+E 
Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPSWG--LSTVWGIGYKFE 231


>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
 gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ +E+ K   +D I+LDL L  + GFE
Sbjct: 4   KILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +     +    + G+L ++ + + V +  + I+LT KE+ ++ELL   +N   ++E  L+
Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+    G   YI T WG GY  +
Sbjct: 183 IIWGSDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYFK 228


>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
          Length = 236

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
 gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
           SYNPCC7002_A0851
 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
           [Synechococcus sp. PCC 7002]
          Length = 251

 Score =  289 bits (740), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-------DAIILDLGL 54
           RIL++ED+  +   I + L+ E + V+  D G  G+ + +  EF       D +ILD+ L
Sbjct: 20  RILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            ++ G ++ R LR    + P+ +LS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCRA 139

Query: 115 IVRRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           ++RR +        S+    D+S+  +   V V+G  + L+ KEY+++EL         +
Sbjct: 140 LLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVWS 199

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 RDQLIEQVWGADFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGYRF 250


>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 230

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A+ +   L+ E + V     G + ++  +  + D I+LD+ L ++ GF+V
Sbjct: 5   ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LRA+R A    PV IL+      DKV GL+ GADDY++KPF+  ELVAR++A +RR+   
Sbjct: 65  LRAIRQASG-VPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASDV 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     V  DL ++L   TV   G  I LT +E+Q++ +L+       T++  ++ 
Sbjct: 124 LREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVDQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL        Y+ T  G GY +R
Sbjct: 184 VWGSDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGYYVR 228


>gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 229

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 172/226 (76%), Positives = 199/226 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV+K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL++A  GKNYIETVWGRGYVLRE  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLASATAGKNYIETVWGRGYVLREPEE 226


>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 231

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   ++  L+ E F+V     G + +   K  + D +ILDL L  I G E
Sbjct: 4   KIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+L A TV+ +G  ++LT  E+++++LL    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLKAHTVKKKGVVVNLTPNEFKILKLLIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
          Length = 234

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ TV G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKFQEPKR 234


>gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
 gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family
           [Rhodobacterales bacterium Y4I]
          Length = 239

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 159/227 (70%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMSRIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVE  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+  +D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQED 227


>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 242

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+KA+  ++   L+ E + V     G+  +E  + ++FD I+LDL L  + G  
Sbjct: 7   KILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+    +ED++ GL+ GADDYI KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-DVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  GDL +++    + V+G+ + LT  E++++  L+        +   +  +
Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E   + ID  +  LR KL +      ++ TV G GY     A+
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFEAPAQ 233


>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
          Length = 238

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 120/235 (51%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E + V     GE G+   +   +DA++LDL L  I G E
Sbjct: 4   RILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVARI+A++RR+  
Sbjct: 64  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTDA 123

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +    LS++   +   V G  + LT +E+ ++   +       ++   L
Sbjct: 124 LERNARLDAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           N ++  + E     ++  I +LR K+       + I TVWGRGY     A  E  
Sbjct: 184 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKFAAPASGEPT 238


>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 127/238 (53%), Gaps = 15/238 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+ E + V     G +G E+   + +D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR  KI  P+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR   
Sbjct: 63  ICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 119 ------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                       S      LI  GD+ ++     V V+G +I +T KE++++  +  R N
Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L++E  L+ +++     E +I+DV I  LR+K+        YI TV G GY     
Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEAP 240


>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+   F V +   GEDG++      +D IILD+ L  I GF+
Sbjct: 3   KILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVH-NMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      ++    ++++  A+ V V G  I  T KE+ ++       N  L+KE    
Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +V  + V I KLR+K+        ++ETVWG GY  
Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGYRF 226


>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
 gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+ G
Sbjct: 64  VCQHIREFS-DMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAG 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  GDL ++ +++ + +    ++LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + +LR+K+        Y+ T WG GY
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGY 225


>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
 gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
 gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
          Length = 233

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 229

 Score =  288 bits (739), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   I + L +E + V     GE+ +   +   +D IILD+ +  + G  
Sbjct: 5   RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      P+ +L+  +   D++ GL+ GADDY+ KPF+  ELVARI+A++RR+  
Sbjct: 65  VCQEIRRVS-KVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGT 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++    + ++L ++ ++V+   + LT KE++++ LL+     + ++E  L  +
Sbjct: 124 ESKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      +V+ +D  + +LR KL  AAG  N+I+TVWG GY     A
Sbjct: 184 WGFDYYGDVRTVDTHVNRLRDKLR-AAGAPNFIKTVWGVGYKFEVEA 229


>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 240

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    + V     G + +     +  D ++LDL L  + G E
Sbjct: 12  RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RRSR 
Sbjct: 72  VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 130

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             QS  +    LS++  A+     G  + LT +E+ ++            +E  +  ++ 
Sbjct: 131 AEQSGALRAAGLSLDPQARRAVKNGTELALTIREFDLLAFFLRHPGRVFGREDLMREVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                ++  + V I +LR K+ +       I+TVWG GY     A+
Sbjct: 191 WDF-GDLSTVTVHIRRLRGKVEDDPARPRLIQTVWGVGYRFESAAE 235


>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 230

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ ED++ +   + L L  E++NVY    G + +++    + D  ILD+ +  + GF
Sbjct: 1   MNILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K + PV  ++     E+K+ GL  GADDYI KPF+  E+VAR++A+ RR  
Sbjct: 61  KVLKKIRE-KSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVG 119

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++Q+       I  G+LS+N D+ T    G+ I L  KEY+++E L   K    TK+  
Sbjct: 120 TYSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++      +   I V I  +R K+ +      Y++T+ G GY L +
Sbjct: 180 YEKVWGYEYYGDANTIMVHISHIRDKIEDNPKEPIYLKTIRGIGYKLEK 228


>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  LA  IEL LK E + V V   G  G+   +    D +ILD  L  I G E
Sbjct: 4   HILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGISGPE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+    + D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ 
Sbjct: 64  ICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQT 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++   DLS+N   + V      I LT KE+ ++E L       LT+E  L  ++  
Sbjct: 124 EDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR KL         ++TV G GYVLR+
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLEAN-NESRLVQTVRGVGYVLRD 224


>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
          Length = 234

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V       + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+ 
Sbjct: 63  VAKTIRKTS-SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++      +V+ +DV + +LR+K+ +      YI T  G GY +R NA
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 234


>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE+ +     ++ D I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +TP+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREIRREN-NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYTA 124

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +          I   DL +NL   +V   G  + +  KE +++  L+   N   T+E
Sbjct: 125 TQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+H++      + + +DV I +LR+K+ +    K  I TVWG GY   
Sbjct: 185 QLLDHIWGYEYVGDTRTVDVHIKRLREKIHDH--EKWSIGTVWGVGYKFE 232


>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
          Length = 234

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 132/232 (56%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   ++  L++E++ V     G++ ++  +   FD IILDL L  + G +
Sbjct: 3   KILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  KI TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARI+AI RRS+ 
Sbjct: 63  VTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQS 122

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q       + I  G ++++ +       GHR+ LT KE++++   + R   TL+++  
Sbjct: 123 QPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDAL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           LN ++      E +++D+ +  LR K+       +Y++TV G GY +    +
Sbjct: 183 LNGVWGFDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQMEAPHE 234


>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ ++ +V     GE+ +EL K  ++D I+LDL L  + G E
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHL 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A++      +  G+L ++ +++ V +    I+LT KE+ ++ELL    N   ++E  LN
Sbjct: 123 EAKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +V+ +DV I +LR+K+ +      Y+ T WG GY  +
Sbjct: 183 IVWGYEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYFQ 228


>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLRE-KTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++   TV  +G  I LT KE +++   +       TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++      +   + V I KLRKK+         I+TVWG GY    +
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239


>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
 gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ ++L K   +D I+LD+ L    GFE
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++      I+ GD+ ++ +++ V +    I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RDKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYFR 228


>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 244

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 22/239 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  I L L  E +   +   G + ++L + Y  D ++LD+ L  + G++V
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R    +TP+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RRS   
Sbjct: 66  CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124

Query: 121 -----------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                             H  + +    L VN+   TV  +GH + +  KE +++  L+ 
Sbjct: 125 ESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLAS 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R N   T+E  L+ L+      + + +DV I +LR+KL+N       I TVWG GY   
Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGYKFE 241


>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
 gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   I   LK E+++V     GE+ ++      +DA+ILD+ +  + G 
Sbjct: 1   MRILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R    +TPV +L+   S+ED+V+GL +GA+DY+ KPF  EEL+AR+R +VR++ 
Sbjct: 61  SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++    G L V++D   V   G  I L+ KE+ ++  +   +   L++E    HL++
Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   ++DV+I  LRKK+ +       I TV G GYVLR N 
Sbjct: 181 YDYMGSSNVVDVYIRYLRKKI-DEGFEPKLIHTVRGAGYVLRVNG 224


>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
 gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           R2-503]
 gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           N1-017]
          Length = 240

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 7   KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 67  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 126

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 127 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 187 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237


>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
 gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL R2-561]
 gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
           J0161]
 gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
           EGD-e]
          Length = 236

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 233

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 174/228 (76%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE + DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPSDDE 228


>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 235

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I  G+L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
 gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 233

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E ++  + + GE  +   + Y+ + ++LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    L VNL   +V   G +I +  KE +++  L+   N   T+E 
Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L++++      + + +DV + +LR+K+ +       I TVWG GY   
Sbjct: 185 LLDNIWGYEYVGDTRTVDVHVKRLREKIKDKPT--WRIATVWGIGYKFE 231


>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 228

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 130/227 (57%), Gaps = 9/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL++D++ +   + L L+ E F V     G++ ++    ++ D IILDL L +I G
Sbjct: 1   MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ + +R   +  P+ +L+      DK+ GL+ GADDY+ KPF+  E+VAR++A++RRS
Sbjct: 61  MEIAKEIRKTSL-VPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRS 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G     A S+I  G L ++ +A+ V+V G  + LT  E+ ++  L   +   L++E  L
Sbjct: 120 SGIPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++      E + +D  + +LR+KL  AA    YI+TVWG GY   
Sbjct: 180 ANVWGYDYFGEARTVDTHVTRLREKLQEAAS---YIKTVWGVGYKFE 223


>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
           Clip81459]
 gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J2-064]
 gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
           J1-175]
 gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
 gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
          Length = 236

 Score =  288 bits (739), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
 gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
          Length = 237

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK +   ++  L+ E + V     GE+ + L     ++ +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLRDT-TNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+++    TV   G  I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+   +    +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231


>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 262

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+ ++  +I L L+ E + VY  D G D + L + +         D IILD+ L
Sbjct: 32  RILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIML 91

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G +V R+LR    +TP+ I+S   S  +KV GL+ GADDYI+KPF+ +ELVAR RA
Sbjct: 92  PQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRA 151

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   +  +        DL +      V ++G  + L  KE++++EL         ++
Sbjct: 152 MIRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSR 211

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  + H++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 212 EQLIEHIWGIDFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261


>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
 gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ ++   I L L+   + V   + GED + L   +  D ++LDL L  I G E
Sbjct: 7   KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R       + IL+      DK+ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++    G L ++  A  +      + LT  EY ++++        L +E  LN ++
Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + K +DV I +LR+K+ +      YI+T+WG GY  +  
Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231


>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
 gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
          Length = 233

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++++   +E+    E ++      G+ G E      +D +I+D  L  + G 
Sbjct: 1   MKILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPIMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR +
Sbjct: 61  TLCRKIRELS-KVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQ 119

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                      + +    ++ +++     G  +  LT KE+ ++  L        T+E  
Sbjct: 120 AETGSADEPHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++  +   + + +DV I +LRKK+      + +I TVWG GY   E A D
Sbjct: 180 LDSVWGYQFYGDERTVDVHIKRLRKKIGTE--EQPFIHTVWGVGYKFDETAAD 230


>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 233

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I   L++E F+  ++  G   +E+ +    D IILDL L  + G 
Sbjct: 1   MNILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLDGL 60

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D++ GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S  +G       T   +V++D +    Q       + LT  E+ ++           ++ 
Sbjct: 121 SLRQGGQTQTYQTAHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++ L+      + +++D  + +LRKK+        +I+TV G GY   +N 
Sbjct: 181 QLIDKLWGDDFFGDERVVDTHVARLRKKVEPDPSHPTFIKTVTGVGYKFEDNP 233


>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 231

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDYI+KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGYKF 226


>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 237

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK +   ++  L+ E + V     GE+ + L     ++ +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLRDT-TNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+++    TV   G  I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+   +    +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231


>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 235

 Score =  288 bits (738), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I TP+ ++S  S   DKV  L+ GADDY++KPF+  ELVAR++AI+RR+  
Sbjct: 64  VCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTSK 123

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q            V G L+V  D   V    H + LT KE++++  L    N TLT+E
Sbjct: 124 EQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKFKE 234


>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 238

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 132/234 (56%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ E + +     GE+ + L    E+D I+LDL +  + G E
Sbjct: 6   KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR  K +TPV +L+      D+V+G + GADDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCTELRKTK-ATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++ LIV   L+++ DA  V V G  I LT KEY+++  L+ + +   ++E 
Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY     ++
Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGYKFEAASE 238


>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 224

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 127/222 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   L+++N+ + V   GE G E  + +E+D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R A  + PV +L+   S +DKV GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS+N +   V    H +HLT KEY ++EL         ++   L HL+ 
Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P  + + V I  +R+KL       + IETV+G GY L+
Sbjct: 181 FEDPPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRLK 222


>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 224

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +E+ L  E + V V + G  G+   +  + D I+LD  L    G EV
Sbjct: 5   ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFSGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+    I D+V GL +GADDY+ KPF+ EEL+AR+RA +RR++  
Sbjct: 65  CRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQEE 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++   +L++N   + +      I LT KE+ ++  L +     LT++  L  ++   
Sbjct: 125 DPDVLEFSNLTLNQRTREIFRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR KL      K  I+TV G GYV+RE
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEEN-QEKRLIQTVRGVGYVMRE 224


>gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
 gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3]
          Length = 238

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 158/227 (69%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDINLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG+   E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+   D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQAD 227


>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
 gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
          Length = 234

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I  GDL +  +A   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
 gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
           Clip11262]
          Length = 236

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK L + ++L L+ E F+V +   G+ G E  + Y ++ +ILD+ L ++ G+E
Sbjct: 5   QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   +R +      P+ +L+     +DK+ GL+ GADDY+ KPF+  ELVAR+RA++RR 
Sbjct: 65  VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       ++  GDL+V+  +  V V+ + + L  KE++++ LL        T+E  L  
Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + +D  + ++RKKL   +G  + I+TVWG GY   
Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229


>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
 gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ N       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
           10403S]
 gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
           FSL J2-003]
 gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
 gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5578]
 gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
           08-5923]
          Length = 236

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233


>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
 gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V+    GE+ +E  K  + D I+LDL L  + G +
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R     TP+ ++S   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  + +  ++ G+L +N         G ++ LT +E++++  L+      +T+E  
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY +
Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
          Length = 235

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  IVKEIRKTS-HTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
 gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M]
 gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1
           str. 9-941]
 gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19]
 gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457]
 gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str.
           870]
 gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513]
 gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686]
 gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis
           M163/99/10]
 gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94]
 gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1]
 gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1]
 gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13]
 gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str.
           292]
 gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis
           M292/94/1]
 gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33]
 gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1]
 gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94]
 gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str.
           C68]
 gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99]
 gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94]
 gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13]
 gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2]
 gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1]
 gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA
 gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA
 gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA
 gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA
 gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA
 gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA
 gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus]
 gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus]
 gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M]
 gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330]
 gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC
           25840]
 gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365]
 gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445]
 gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo]
 gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A]
 gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM
           4915]
 gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68]
 gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94]
 gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1]
 gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1]
 gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94]
 gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33]
 gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10]
 gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513]
 gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686]
 gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1]
 gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether]
 gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1]
 gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13]
 gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026]
 gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str.
           B3196]
 gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1]
 gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2]
 gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653]
 gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 232

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 171/236 (72%), Positives = 200/236 (84%), Gaps = 4/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE       E  E+A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGNQSYIETVWGRGYVLREP----DAEMRESA 232


>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
 gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Listeria marthii FSL S4-120]
          Length = 236

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 131/231 (56%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    ++
Sbjct: 123 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
 gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
          Length = 232

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  IE+ LK+E F +Y +  G+D     +  + +  ILD+ L DI GF
Sbjct: 3   MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L +++D     +   +I LT KE+ ++ +L   +   ++ E 
Sbjct: 122 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 181

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++  +        + V I  LR+K+  +A    YI+TVWG GY + +
Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232


>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 231

 Score =  288 bits (738), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + + +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+  A TV+ +G  ++LT  E+++++ L    N   T+E  +  
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 228

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   + L     +D +ILDL +  + G  
Sbjct: 3   KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R  +I+TPV IL+      DK+ GL+ GADDY+ KPF+  ELVAR++A++ R+  
Sbjct: 63  CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 122

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +  G+LS++  + TV+V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 123 RTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L    G   YI TVWG GY    +A
Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDA 226


>gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti
           MAFF303099]
 gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 231

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 171/224 (76%), Positives = 197/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL  A+GG+NYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAASGGQNYIETVWGRGYVLREP 224


>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
 gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 242

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  IE+ LK+E F +Y +  G+D     +  + +  ILD+ L DI GF
Sbjct: 13  MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 73  TLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 131

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L +++D     +   +I LT KE+ ++ +L   +   ++ E 
Sbjct: 132 KYNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEE 191

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++  +        + V I  LR+K+  +A    YI+TVWG GY + +
Sbjct: 192 LFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 242


>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  IEL LK E + V V + G  G+   +    D I+LD  L  I G ++
Sbjct: 6   ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+    I D+V GL +GADDYI KPFN EEL+AR+RA +RR+   
Sbjct: 66  CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              L+   DLS+N + + V      I LT KE+ ++E L       L+++  L  ++   
Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL  A   K  I+TV G GYVLR+
Sbjct: 186 FMGDSNIIEVYVRYLRLKLE-AEQEKRLIQTVRGVGYVLRD 225


>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
 gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
          Length = 266

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK +   ++  L+ E + V     GE+ + L     ++ +ILDL +  + G 
Sbjct: 33  IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKVDGI 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 93  EVCRKLRDT-TNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 151

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+++    TV   G  I+LTGKE ++++  +       TK  
Sbjct: 152 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 211

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+   +    +I+TVWG GY   
Sbjct: 212 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 260


>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 233

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V   + GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
 gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
          Length = 242

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L  E + V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 10  RILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 70  ICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +  G L+++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 130 MGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++  + +     ++  I +LR K+         I TVWG GY   +
Sbjct: 190 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYKFAD 237


>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
           [Streptococcus thermophilus CNRZ1066]
          Length = 235

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  I+  L  E + V     G + +E  +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R     TP+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  IVKEIRKTS-HTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S    +  I  G+L +  DA   + +G+ + LT +E++++  L+      +T+
Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
 gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
           [Ammonifex degensii KC4]
          Length = 229

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I  +L  E + V  +  G + +   +    D +ILDL L D+ G E
Sbjct: 5   KILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K + PV I+S      DK+ G   GADDY++KPF+  ELV R++A++RR +G
Sbjct: 65  VCRQLRA-KYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I    L ++  ++TVE+ G  I+LT +E+ ++ +L+   N   +++  LN 
Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +   + V I +LR+KL         I+TVWG GY  +
Sbjct: 184 VWKNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGYKFQ 228


>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 233

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
 gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
          Length = 232

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++++A  IE+ LK+E F +Y    G+D +   +  + +  ILD+ L DI GF
Sbjct: 3   INILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  TICQKIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + LI    L ++++     +   ++ LT  E+ ++ +L   +   ++ E 
Sbjct: 122 KYNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEE 181

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + ++  +        + V I  LR+KL ++A    YI+TVWG GY + 
Sbjct: 182 LFHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGYKIE 231


>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
 gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
          Length = 245

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/242 (33%), Positives = 125/242 (51%), Gaps = 22/242 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  I L L  E +   +   G + ++L + Y  D ++LD+ L  + G++V
Sbjct: 6   ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGMDGYQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R    +TP+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RRS   
Sbjct: 66  CTEIRKTS-NTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAMT 124

Query: 121 -----------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                             H  + +    L VN+   TV  +GH + +  KE +++  LS 
Sbjct: 125 ESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLSS 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R N   T+E  L+ L+      + + +DV I +LR+KL+N       I TVWG GY    
Sbjct: 185 RPNQVFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLNNNHNWS--IATVWGIGYKFEW 242

Query: 224 NA 225
            A
Sbjct: 243 RA 244


>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V   G  + LT  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium
           extorquens DM4]
 gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens AM1]
 gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA)
           [Methylobacterium extorquens DM4]
          Length = 233

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 173/228 (75%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREPVEGE 228


>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
          Length = 234

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ +L   ++ + +++ + V     GE+  +      FD IILD+ +  I G 
Sbjct: 10  MKILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R + I TPV +L+    +EDK++GL  GADDY+ KPF+ +EL+AR+RA+ RRS 
Sbjct: 70  AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S++   DL ++   + V   G  + LT +E+ ++E L   KN  +++     H++ 
Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189

Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P      +DV I  LR K+         I+T+ G GY+++++
Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIE-NFDNNRIIQTIRGVGYIIKDS 234


>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 242

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G   + L +    D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      PV  L+      DKV+GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 71  VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTAP 130

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S++   DL ++ D   V   GH + L+  E++++  L L     L+K   L+H+
Sbjct: 131 DEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-----KNYIETVWGRGYVLRENA 225
           +      +  I++ +I  LR+K+              I T  G GY+LRE+ 
Sbjct: 191 WQYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLLRESP 242


>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 233

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 236

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L+   + V V   GE+ +E       + I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +++R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS  
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSAI 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   + +  I+ G + +  +   V  +   + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEAVPVENDEDDILIGSIRIRPEYFEVYREDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 241

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 128/234 (54%), Gaps = 5/234 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD  +A  + L L+ E + +     G + ++  +   +DA+ILDL L ++ G
Sbjct: 7   MKQILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R +R      P+ I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR 
Sbjct: 67  LEICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 126

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   Q+     I    L+++  A+TV + G  + LT +E++++   +       ++   L
Sbjct: 127 QAMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             ++  + E     ++  I +LR K+   A     + TVWG+GY   E   D +
Sbjct: 187 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQNHDAS 240


>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 238

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I   LK+E + +     G+  +E    ++ D ++LDL L  I G E
Sbjct: 3   KILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VCRQIRKDS-QVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
            A+           ++I  GDL ++ D       G  + LT +E++++  LS   N  +T
Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +E  L  ++      +V+ +DV + +LR+K+         + T  G GY
Sbjct: 182 REHLLQTVWGYDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGY 230


>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 239

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++I+D   +   +   L+ E ++V   +  E  ++  K  + D  I+D+ L ++ GFE 
Sbjct: 6   IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R +R       TPV  LS      DKV GL+ GADDYI KPF+  EL+ARIRA+ RR +
Sbjct: 66  VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       IV  DL +++D   V V+G ++ LT  E+ ++  L+  +    ++++ 
Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ L+      + + +DV I +LR K+ +      Y+ TV G+GY  R+  K+E
Sbjct: 186 LDKLWGYDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKFRDPGKEE 239


>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 249

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  +   L    + V   D G   +     +  D ++LDL L  + G E
Sbjct: 16  RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RRSR 
Sbjct: 76  VCRRMRGHGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 134

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    +    L+V+  A+     G  + LT +E+ ++            +E  +  ++ 
Sbjct: 135 AAPGHRLGAAGLAVDPAARRATKNGSELALTLREFDLLSFFLRHPGRAFGREDLMREVWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  + V + +LR K+ +       I+TVWG GY  
Sbjct: 195 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRF 234


>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  287 bits (737), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ 
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGYYVKQP 235


>gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
 gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           KLH11]
          Length = 238

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 157/224 (70%), Positives = 186/224 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDP 224


>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
           urealyticum DSM 7109]
          Length = 226

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F+  V   G D +   + ++ D I+LD+ L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+  +   D V GL+SGADDYI+KPF  +EL+AR+RA +RRS  
Sbjct: 64  VCRTVREFS-TVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPE 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   + I  G++ ++     V   G  I+LT  E+ ++  L+ R     ++E  L  ++
Sbjct: 123 EADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 GYRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGYK 223


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F V +   G++G++     ++D IILD+ L  + GFE
Sbjct: 488 KILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFE 547

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 548 ICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     +++    ++++  A+ V V G  +  T KE+ ++       N  L+KE    
Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +V  + V I KLR+K+        ++ETVWG GY L
Sbjct: 667 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 711


>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    + +NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREKIKDHPTWS--LGTVWGIGYKFE 231


>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
 gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
           DC2201]
          Length = 237

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +   +  + D  +LD+ L DI GF 
Sbjct: 9   KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+  L+     +DKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +    L ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+ N     + I T  G GY+LR
Sbjct: 189 EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLLR 231


>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTND 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+  A TV+ +G  ++LT  E+++++ L    N   T+E  +  
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 169/224 (75%), Positives = 198/224 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE+FNVY TDLGE+G++L K YE+D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LR+AK+ TP+ ILSG+++ EDKV+G   GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREP 224


>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
           raciborskii T3]
          Length = 272

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 42  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI      D+S+N     V V+G  + L+ KE++++EL         ++
Sbjct: 162 LLRRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 221

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 222 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 271


>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 238

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  ++L    ++  I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RR+  
Sbjct: 67  VCNRLRQVK-ATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLE 235


>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 235

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++  + Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I  G+L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q+ +    L++NL+  TV      I LTGKE ++++          TK  
Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231


>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
 gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  287 bits (737), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLRE-KTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++   TV  +G  I LT KE +++   +L      TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++      +   + V I KLRKK+         I+TVWG GY    +
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239


>gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
 gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6]
          Length = 239

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 159/228 (69%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQDDQ 228


>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 236

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 128/231 (55%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G E
Sbjct: 3   KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K+  P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G
Sbjct: 63  VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 122

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A          ++ I+ GDL +  ++  V +    + LT KE++++  L+  +    ++
Sbjct: 123 KAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 183 DQLLDTVWNYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233


>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
 gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
          Length = 238

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 127/235 (54%), Gaps = 8/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+ +D+K +   ++  L+ E + V +   GE+ + L +  +++ IILDL +  + G 
Sbjct: 4   IRVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++ARI+A++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++L+    L+++++  TV V    I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++D     +   + V I KLRKK+        +I+TVWG GY       +E
Sbjct: 183 LFRNVWDSNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKFVGEKIEE 237


>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 256

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+ + +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256


>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 237

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L  E + V     G++ ++  +  + D ++LD+ L    G EV
Sbjct: 6   ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKRDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR    
Sbjct: 66  CREVR-KKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNVP 124

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           AQ        + IV G L++  DA  V  +   I LT +E++++  L+      +T+E  
Sbjct: 125 AQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++      +V+ +DV I +LR+K+ +      +I T  G GY LR   ++
Sbjct: 185 LQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYLRNPEQE 237


>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  +E+ LK+EN+N++    G+D ++     + D  ILD+ L D+ GF +
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVDGFSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + PV +L+      DK+ GL  GADDYI+KPF   EL+AR++A +RR    
Sbjct: 65  CRQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I    L ++++     +   ++ LT  E+ ++ +L   +   ++ E   
Sbjct: 124 NSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++  +        + V I  LR+K+ ++     YI+TVWG GY + +
Sbjct: 184 NEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGYKIEK 232


>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 234

 Score =  287 bits (736), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55
           R+L+++DD  +  ++E  L  E F V     G   I+     +      FD ++LDL L 
Sbjct: 3   RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G +V R LR +   TP+ ++S   +  D+V GL+ GADDY+ KPF   ELVAR RA+
Sbjct: 63  GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRAL 122

Query: 116 VRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RRS+   +      +I  GDLS+  D   V  +G R++L+ KEY+++E          +
Sbjct: 123 LRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVWS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++ ++      + K +DV I  LR+KL        +I TV G GY  
Sbjct: 183 RNQLIDQVWGTDYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGYRF 233


>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 229

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   +   L+ E + V     GE G+++ +    D ++LDL +  + G +
Sbjct: 6   KILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLSGND 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TPV +L+    + DK+ GL+ GADDY++KPF   ELVARI+A++RR+  
Sbjct: 66  VCRIIRQES-ETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L+V+++ +  ++ G  I LT  E+ +++L++       ++   L+ L  
Sbjct: 125 RTFAPVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + ID  I  LR+K+       +YI+TV+G GY L 
Sbjct: 185 DTYEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRLE 226


>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 233

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 227

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V RA+R      P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R  
Sbjct: 64  VCRAIRHVS-DVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   I   DLS+++    V+  GH I LT  E+ ++  L+       ++E  L  ++ 
Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGYR 222


>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 256

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256


>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 233

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 69  VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAN 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNT--QPRLIHTLRGVGYVLRKPA 232


>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 232

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +E+L+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
 gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
 gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 237

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKFV 231


>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 231

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E F+V     G + ++  K  + + +ILDL L  I G E
Sbjct: 4   KILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DK+ G   GADDY++KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRIRQFS-NVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+  A TV+ +G  ++LT  E+++++ L    N   T+E  +  
Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226


>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 233

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 224

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 139/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L + I   LK   ++V     GE+ ++  ++ E+D +ILD+ +  + GF
Sbjct: 1   MKILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR     T V +L+   S +DKV+GL  GADDYI KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + ++ G+L +N   K+V   G +I LTGKEY+++E L   KN  L+++    H++D
Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  IIDV I  +RKK+ +  GGK  I T  G GYV+++ 
Sbjct: 181 FDYEGDSNIIDVLIKNIRKKI-DVEGGKQIIYTKRGLGYVIKDE 223


>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 231

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   ++  L+ E F+V     G + ++  K  + D +ILDL L  I G E
Sbjct: 4   KIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    + P+ +L+      DK+ G   GADDYI+KPF+  ELV R++AI+RR+  
Sbjct: 64  LCKRLRQFS-NVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL V+L A TV  +G  ++LT  E++++++L    N   T+E  +  
Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     E   + ID  I  LR+K+ +      YI+TV+G GY  
Sbjct: 183 VMGFDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226


>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
 gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 233

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 238

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 149/224 (66%), Positives = 184/224 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ ++ +IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLVVEDDQLMSRAIESMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+I TPV ILSG+S  + K++GL SGADDY++KPF+K ELVARI+AIVRRS+
Sbjct: 61  EVLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG LSVNLDA+TV V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY 
Sbjct: 121 GHAQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ 
Sbjct: 181 GIDEPELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRDP 224


>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 238

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 131/233 (56%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ ENF +   D GE  +E+    E+D I+LDL +  + G +
Sbjct: 6   RILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPKLDGMQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TP+ +L+      ++V G + GADDYI KPF+  E+V R++AI+RR+  
Sbjct: 66  VCEELRKTK-ATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V V+   ++LT KEY+++  L+ + +   ++E 
Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENA 225
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY    N 
Sbjct: 185 LLKEVWNYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENNP 237


>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
 gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
          Length = 237

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK +   ++  L+ E + V     GE+ + L     ++ +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR    + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLRDT-TNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L+++    TV   G  I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+   +    +I+TVWG GY   
Sbjct: 183 IFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKFV 231


>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
 gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
           29799]
          Length = 230

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  + L L+ E +   V   G  G+EL + +  D ++LD+ L  + G+ 
Sbjct: 4   KVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMDGWS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R     TPV +L+     EDKV GL+ GADDYI KPF  +E++ARI A++RR   
Sbjct: 64  VLKKIRE-SDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGA 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  +    L +NLD+  + V G R+    KE +++  L+   N   T+   L+ 
Sbjct: 123 EEEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL      +  ++TVWG GY   
Sbjct: 183 VWGFDYFGDSRTVDVHIKRLREKLEGV-SEQWSLKTVWGVGYKFE 226


>gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 233

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 174/228 (76%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREPTDDE 228


>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 283

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E + V V   G D +       +DAI+LDL L  + GF
Sbjct: 30  MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    PV +L+    ++D++RGL +GADDY+ KPF+  EL AR+RA+VRR  
Sbjct: 90  EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++     V   G  + L+ KE+ ++ LL    +  LT+   ++H++D
Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    I+D ++  +R+K+ +   G + IETV G GY LR  A+
Sbjct: 210 FAFDGTSNIVDQYVRYVRRKI-DIPDGPSLIETVRGVGYRLRTPAE 254


>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 123/225 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ +A  +   L   ++ V V   GE   EL   YE+D I+LD+ L  I G 
Sbjct: 1   MKILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RR  
Sbjct: 61  SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+LS+N +   V  Q   + L+ KEY+++E      +    +   L+HL+ 
Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               PE   +   I  LR+K+    G  + IETV+G GY L+E  
Sbjct: 181 LEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRLKEQP 225


>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD ++A +IE  L  +++ V V   G++  EL   +E+D I+LD+ L  I G 
Sbjct: 1   MKILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R  R     TP+ +++   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RR  
Sbjct: 61  SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++ ++  +  V  Q   I L+ KEY+++E     +    ++   L HL+ 
Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               PE   +   I  LR+KL       + IETV+G GY L+E  +
Sbjct: 181 FERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRLKEKPE 226


>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
 gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
          Length = 227

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +     ++D +ILD+ L  + G 
Sbjct: 1   MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR R
Sbjct: 61  TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              Q      LI T   S+N   + V + G  +  LT KE+ ++  L+       ++E  
Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  ++  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--SSEEKPFLYTVWGVGYKFDED 227


>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 237

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 13  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 73  VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTAT 132

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 133 GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 193 NYDFRGDDNIVESYISYLRRKVDNT--QPRLIHTLRGVGYVLRKPA 236


>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
 gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
          Length = 237

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ EDDK + + +++ L+ E + V     G++ ++L     ++ +ILDL +  + G 
Sbjct: 4   IRILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E++AR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L ++L+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDNNYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGYKFV 231


>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecium DO]
 gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium D344SRF]
 gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1071]
 gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1636]
 gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1679]
 gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium U0317]
 gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1039]
 gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Enterococcus faecium E1162]
 gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 234

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L+ E + V     G +G+EL     FD IILD+ L  + G E
Sbjct: 3   KILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K  TP+ +L+      D++ GL+ GADDY++KPF+  E++AR++AI RR   
Sbjct: 63  ITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIEP 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        +  G ++ +L    V V  H I LT KE++++     RK+  + ++  
Sbjct: 123 RKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ +++     + +I+DV +  LR+K+        Y+ T+ G GY  +E  +
Sbjct: 183 LDRIWNFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKFQEPKR 234


>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 232

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 132/230 (57%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++++ED+KA++  I+  L+ E + V V   GE+G+E+      D ++LD+ +  + G  
Sbjct: 3   KVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K + P+ +L+  +   DKV GL+ GADDYI+KPF   EL+AR++A +RR   
Sbjct: 63  VCKLVRKTK-NMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTS 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           H +         + IV G+L +NL+   V   G  I LT +E+++++ L+++K    T+E
Sbjct: 122 HEEIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY  R
Sbjct: 182 ILLEKVWGFEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYFR 231


>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
 gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
          Length = 235

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD  +A  + L L+ E + +     G   ++  +   +DA+ILDL L ++ G
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR 
Sbjct: 61  LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   Q+     I    L+++  A+TV + G  + LT +E++++   +       ++   L
Sbjct: 121 QAMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  + E     ++  I +LR K+   A     I TVWG+GY   E
Sbjct: 181 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAE 228


>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 256

 Score =  287 bits (736), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256


>gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
 gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp.
           TrichCH4B]
          Length = 239

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 158/230 (68%), Positives = 188/230 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+  +D   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGDNYIETVWGRGYVLRDPQEDHAT 230


>gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
 gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301]
          Length = 232

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 171/236 (72%), Positives = 200/236 (84%), Gaps = 4/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE       E  E+A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLREP----DAEMRESA 232


>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 233

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 233

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 239

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 158/227 (69%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLR+  +D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATDGENYIETVWGRGYVLRDPQED 227


>gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 237

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 164/226 (72%), Positives = 194/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDHATAQSIELMLKSEGFNVYTTDLGEEGIDLGKIYDYDMIMLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV KI+TPV ILSG + IE KV+    GADDY++KPF+K+EL+AR  A+VRRS+
Sbjct: 61  EVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ++I TG+++VNLD KTVEV GHR+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AAGGK+YIETVWGRGYVLR+ ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATAAGGKHYIETVWGRGYVLRDPSE 226


>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  GD+ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 232

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  LK+  +  ++   G + + + K  + + I+LDL +  + GF+
Sbjct: 5   KILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGMDGFD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + ++  K   +T + +L+      DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +  +  L V+ +   V++QG+++ LT KE++++++L   K   L +EM L+
Sbjct: 125 ASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E + +DV I  LRKK+        +IET+ G GY    
Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFNP 231


>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis RP62A]
 gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
 gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis M23864:W2(grey)]
 gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus epidermidis FRI909]
 gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU144]
 gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU045]
 gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU028]
          Length = 236

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L++  + V V   GE+ ++  +  + + I+LD+ L    G E
Sbjct: 4   KILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +          I+ G + +  +   V  +   + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 238

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  + +    ++D I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR  K +TPV +L+      ++V+G ++GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++ + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKLE 235


>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
 gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+A  +E+ LK+EN+N++    G+D ++  +  + D  ILD+ L D+ GF +
Sbjct: 5   ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVDGFSI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + PV +L+      DK+ GL  GADDYI+KPF   EL+AR++A +RR    
Sbjct: 65  CRQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I    L +++D     +   ++ LT  E+ ++ +L   +   ++ E   
Sbjct: 124 NSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEELF 183

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++  +        + V I  LR+K+ ++A    YI+TVWG GY + +
Sbjct: 184 SEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGYKIEK 232


>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 228

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ +   V     GE+ + L K  EFD I+LD+ L  + GFE
Sbjct: 4   KILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLTGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDY++KPFN  E+ ARI+AI+RR++ 
Sbjct: 64  VCQQVREFS-DVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++LIV G++ ++ +++ V +    ++LT KE+ M+ELL+L +N   ++E  LN 
Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+K+ +      Y+ T WG GY  R
Sbjct: 183 VWGYDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYFR 227


>gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA
 gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 232

 Score =  287 bits (736), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 171/236 (72%), Positives = 200/236 (84%), Gaps = 4/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAIAQSIELMLKSESFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR++K+ TP+ ILSGM+ IEDKVRGL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL   +G ++YIETVWGRGYVLRE       E  E+A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSGSQSYIETVWGRGYVLREP----DAEMRESA 232


>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
 gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
          Length = 233

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E F+  +   GED +   + YE + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +LS    I DKV GL+ GADDYI KPF+ +E++AR+RA++RR   
Sbjct: 66  VCREIRA-KSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      +    L++NL   +V   G+ + +  KE +++  L+   N   T+E 
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+KL +    K  + TVWG GY   
Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPHWK--LGTVWGIGYKFE 231


>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 233

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E F+  +   GED +   + YE + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   P+ +LS    I DKV GL+ GADDYI KPF+ +E++AR+RA++RR   
Sbjct: 66  VCREIRA-KSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+      +    L++NL   +V   G+ + +  KE +++  L+   N   T+E 
Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+KL +    K  + TVWG GY   
Sbjct: 185 LLDRIWGYEYLGDTRTVDVHIKRLREKLKDHPQWK--LGTVWGIGYKFE 231


>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   ++  L  +   V     GE+ +E  +  ++D I+LD+ L  + G  
Sbjct: 13  RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E+ AR++AI+RR+  
Sbjct: 73  VCQQIREFS-NVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSS 131

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    ++I  GD+ ++ D++++ +    I+LT KE+ ++E+L++      +++  L 
Sbjct: 132 ITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLK 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +DV + +LR+K+ N      Y+ T WG GY  
Sbjct: 192 AVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236


>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 236

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 126/233 (54%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K++A  ++  L+ E F+V     G + +E  K  + D ++LD+ L    G E
Sbjct: 4   HILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+   S  DKV GL+ GADDY+ KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVRKQ-YDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQV 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  I  G+LS+  +A  V+ +G  + LT +E+++I  L       +T+E  L
Sbjct: 123 AADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + +LR+K+ +     N+I T  G GY L     ++
Sbjct: 183 QAVWGYDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGYFLSAPEGEQ 235


>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 230

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +   L  E + +   + G   + + + ++   +ILD+ +  I GFE
Sbjct: 5   KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  SS  DKV GL++GADDY+SKPF  +EL+AR+RA++RRS+ 
Sbjct: 65  LCRLIRAES-SVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  GDL + ++   V   G  +  + KE+ +   L   +    ++E  L 
Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV I  LR+K+        ++ TV G GY   E
Sbjct: 184 KVWGYDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFEE 230


>gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 289

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 63  MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 122

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 123 TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 181

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +I T   ++N   + V + G  +  LT KE+ ++  L        ++E  
Sbjct: 182 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 241

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 242 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 289


>gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
          Length = 224

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV  L +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+         I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTD-ENVKLIQTVRGVGYVLK 221


>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + +E+      D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R+LR      PV +L+   S  DK+ GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRSLRQRS-KVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRRRGD 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + S++  G + +++D   V V+G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 AEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR K+        YI TV G GY   
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGYKFE 225


>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 256

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 25  RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 85  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 204 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 256


>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
           35316]
          Length = 235

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD+ +A  + L L+ E + +     G + + L +   +DA+ILDL L  + G
Sbjct: 1   MKQILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR 
Sbjct: 61  LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   Q+     I    L+++  A+TV + G  + LT +E++++   +       ++   L
Sbjct: 121 QAMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  + E     ++  I +LR K+   A     + TVWG+GY   E
Sbjct: 181 EQVWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAE 228


>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 227

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F+V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV  L+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 66  LCREVRKFS-KVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   DL V+L    V  +G  + LT KE +++  L    N   T++  L +++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227


>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 230

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +D++A+  S+   L    + V + + G   +EL +  +   +ILD+ +  + G 
Sbjct: 1   MKILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++ RRS 
Sbjct: 61  EVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRSI 120

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +Q+      +   DL +N D + V   G  I LT  E+ ++E L       L++   L
Sbjct: 121 TESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSDIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V+I  LRKK     G    I TV G GYVLRE A 
Sbjct: 181 EEVWGYNFPTSGNALEVYIGYLRKKTEAN-GESRLIHTVRGVGYVLRETAP 230


>gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 227

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQ 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +I +   ++N   + V + G  +  LT KE+ ++  L        ++E  
Sbjct: 120 ATGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
          Length = 230

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 8/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED+K ++  ++  LK E +++     G DG +       D I+LD+ L  + 
Sbjct: 1   MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V R +R  K S P+ +++      DK+ GL+ GADDYI+KPF+  EL+AR++A +RR
Sbjct: 61  GFDVCRHIRE-KSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +           LI   +L ++    +V      + LT +EY++++ L+++ N   ++E 
Sbjct: 120 TSMPNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +DV I +LR+KL + A    YI T  G GY  +
Sbjct: 180 LLKQVWGYEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFFK 228


>gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
 gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 237

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 158/229 (68%), Positives = 188/229 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229


>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
 gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
           29176]
          Length = 233

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 126/229 (55%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   + TP+ +LS  S + DKV GL+ GADDYI KPF+ +E+VAR+RA++RR + 
Sbjct: 66  VCREIRAKSV-TPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L++NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 LLDRIWGYEYIGDTRTVDVHIKRLREKIKDHPHWS--LSTVWGIGYKFE 231


>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 244

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + ++       D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR   +
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRGGGE 244


>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
 gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
          Length = 238

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 237

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 158/229 (68%), Positives = 188/229 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 229


>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 240

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G   + +   +  D ++LD+ +  + GF 
Sbjct: 13  RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+R LR +   TPV  L+   + EDKV GL  G DDY++KPF+ +E++ARIRA++RRS  
Sbjct: 73  VVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRSTG 132

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R      +   D+ ++ ++  V   G  + L+  E++++  L       L+K   L+H
Sbjct: 133 PQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILDH 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +  +++ +I  LR+K+         + T+ G GY LR
Sbjct: 193 VWNYDFNGDANVVESYISYLRRKV--DTTEPRLLHTIRGVGYTLR 235


>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
          Length = 236

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++      G++ + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +A  I   L  E +   V   GEDG+E    +    I+LDL L    GF 
Sbjct: 4   RVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +L+   S  DKV GL+ GADDY++KPF   EL+ARI+A++RR   
Sbjct: 64  VCKEIRSQS-SVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNL 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S    + ++   D+ +NL    V+ QG  I LT +E+Q+   L  R+   +++E
Sbjct: 123 SGQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +  ++      E + +DV I +LR+KL +  G  +YI T  G GY LR
Sbjct: 183 RMIEEVWGYDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYLR 232


>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  287 bits (735), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ + + +   LK++ F V+    GE  + L +  + D I+LDL L  + G E+
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R L+       V +L+  +   DKV GL  GADDY++KPF+  ELVAR++AI+RR R  
Sbjct: 65  CRRLQRDGGPY-VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRHT 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +L+   DL +++  + V+ +G  + LT +E+ ++  L+       T+E  L 
Sbjct: 124 SVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   +++DV I  LR+KL +       I+TV G GY  
Sbjct: 184 RVWGHDFDGVDRVVDVHISLLRRKLEDDPTEPTLIQTVRGVGYKF 228


>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 228

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ +   I++ L+S  ++  +   G+        Y+ D ++LD+ L  + G +
Sbjct: 7   KILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R     TPV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKWIRKDS-ETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++  V  + + I +  KE++++  L+   N   T+E  L  ++
Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL      +  IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQGDQNWQ--IETVWGVGYKFE 226


>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 250

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-------EFDAIILDLGL 54
           RIL++ED+  +   + L L+ E ++V     G   + L           +F  +ILDL L
Sbjct: 20  RILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R +R    S P+ ILS  +S  D+V GL+ GADDY++KPF+  EL+AR RA
Sbjct: 80  PQVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRA 139

Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R ++      +   D+++  +   V V+G  ++L+ KE++++EL         ++
Sbjct: 140 LLRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 249


>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA  +   L +E + V V + G  G  + +   +D IILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A++ TP+ +L+      D+  GL  GADDY++KPF+   L ARIRA++RRS 
Sbjct: 61  QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A ++   GDL ++  AKTV      I LT KE+ ++E L+ R    ++K   L H++D
Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +V I++V+I  LR+KL +A  G+  I T+ G GY L  + 
Sbjct: 181 FAYDGDVNIVEVYISYLRRKL-DAPFGRQAITTLRGAGYRLAADG 224


>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
 gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
          Length = 252

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 80  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 139 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 199 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
 gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 230

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  GDL ++ +++ + + G  ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + +LR+K+ +      Y+ T WG GY
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGY 225


>gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
 gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp.
           BTAi1]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 166/224 (74%), Positives = 198/224 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREP 224


>gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 173/228 (75%), Positives = 199/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGKNYIETVWGRGYVLREPVEGE 228


>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 124/225 (55%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +   +   L+ E + V + + G   +EL    + D ++LD+ L ++ G +
Sbjct: 3   KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           V + +R      + P+ +LS    + D+V GL+ GADDYI+KPF+  EL+ARI+A +R  
Sbjct: 63  VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R+       +  GDL +  ++  V ++G ++ LTGKE++++ +   R N   ++E  L 
Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +DV I  LR KL + +     IE+V G GY L
Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVS---PIIESVRGVGYRL 224


>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
 gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
          Length = 237

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     G++ ++L     ++ +ILD+ +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ +    L++NL+  TV      I+LTGKE ++++  +       TK  
Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+   +    +I+T+WG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGYKFV 231


>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 227

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F+V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV  L+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 66  LCREVRKFS-KVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   DL V+L    V  +G  + LT KE +++  L    N   T++  L +++
Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227


>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
 gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
           49626]
          Length = 241

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 124/235 (52%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +  ++   L+ EN+ V     G+  +E  + + FD +ILDL L  + G  
Sbjct: 7   RILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDVS-NVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  G L++++    + ++G  + LT  E++++  L+       ++   +  +
Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231
                E   + ID  +  LR KL +     +++ TV G GY      NA  +T E
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFEAAPNAYSDTAE 240


>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V  +G  + LT  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
 gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E + V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 228

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  +EL L SE + V V   G  G+ L +    D  +LD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLSGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQET 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + L+   DLS+N   + V      + LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V+I  LR KL      K  + TV G GY LRE
Sbjct: 185 FMGDSNIIEVYIRYLRLKLEEN-NEKRLVHTVRGVGYALRE 224


>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 231

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IEL LK E ++V     G++ ++  + +  D  ILD+ +  +
Sbjct: 1   MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV+R +R      P+  LS  +S  DK+ GL  GADDY++KPFN  EL+AR+ A +R
Sbjct: 61  DGYEVIRQIREQH-HMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLR 119

Query: 118 RSRGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R    +Q        +  G + +  D + V + G  I LT KE+ ++ LL+       + 
Sbjct: 120 RYMQMSQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFST 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 ENIFQHVWGEAYFETSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTF 229


>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
           A2-165]
          Length = 232

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L  E + V   + GE+G++     + D ++LD+ +  + G E
Sbjct: 5   KILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    +TPV +L+      DKV GL+ GADDY+ KPF+ +E+VARI+A++RR   
Sbjct: 65  VCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTT 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   +L +++++  + V+G  +    KE +++  L+   N   T++  L
Sbjct: 124 TTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 DEVWGFEYYGDSRTIDVHVKRLREKL-AGASDKWELKTVWGVGYKFE 229


>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+A  + ++L+ + + V  +  G   +E       D ++LDL L  + G E
Sbjct: 9   RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL++GADDY++KPF  EELVARI+A VRRS  
Sbjct: 69  VCRRLRRESG-VPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++D   V      I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ +     + + TV G GY 
Sbjct: 188 RHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGYR 226


>gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 168/228 (73%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKGLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G N+IETVWGRGYVLRE  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGHNFIETVWGRGYVLREMGEQE 228


>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 248

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L+ E F+  V   G + +      + D I+LD+ L  + G +
Sbjct: 28  KILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMNGVD 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +LS  +   D V GL+SGADDYI+KPF  +ELVAR+RA +RR   
Sbjct: 88  VCRAIRKTSG-VPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GDL +++    V+  G  I LT  E+ ++  L+ R    LT+E  L  ++  
Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWGY 206

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   + ++++V I +LR K+         I+ V G GY + E
Sbjct: 207 KQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKIGE 248


>gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
 gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA
           [Bradyrhizobium sp. ORS278]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 166/224 (74%), Positives = 198/224 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SIELMLKSE+FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRV+KI TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLKQLRVSKIKTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+NA+ G+N+IETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASEGRNFIETVWGRGYVLREP 224


>gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 171/225 (76%), Positives = 198/225 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD ++A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDVSVAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREEP 225


>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 228

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I   E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G +  +ETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEEWQLETVWGVGYKFE 226


>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  L   +   L+ + + +     GE+ ++      FD IILDL L  I G E
Sbjct: 4   KLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R     TP+ +L+       K+ GL+ GADDY++KPFN  EL ARI+A++RR++ 
Sbjct: 64  VCQTIRQTS-QTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   D  +N   + V + G  ++LT KE+ ++ LL+       ++E  L  
Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +DV + +LR+K+ + +    YI T WG GY  R
Sbjct: 183 IWGYEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYFR 227


>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 254

 Score =  286 bits (734), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDIP 58
           R+L++EDD ++  ++   L++E F V+    G   + L         D I+LDL L  + 
Sbjct: 26  RLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGLG 85

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R LR    +TP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 86  GLDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 145

Query: 119 SRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S     S          +L +      V   G  + L+ KEY+++EL         +++ 
Sbjct: 146 SSQSETSPSQPHSFTHANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQ 205

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++      + K +DV I  LR+K+         I TV G GY  
Sbjct: 206 LLEKIWGVDFIGDTKTVDVHIRWLREKVEQEPSSPQLIRTVRGFGYRF 253


>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 233

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  I+   + E + V     G++ I L K   +D I+LD+ +  + GFE
Sbjct: 4   KILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            LR +R      PV +L+      DKV GL+ GADDY+ KPF+  EL+AR++A++RR   
Sbjct: 64  ALREIRKTS-DVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    S++   DL ++L+   V      I LT +E+++++ L+       ++E  L  
Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     +++ +DV + +LR+K+ +   G  YI+T  G GY    +
Sbjct: 183 VWEYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGYFFASD 229


>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
 gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
           [Anoxybacillus flavithermus WK1]
          Length = 244

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + L+ E + +   + GE+ + L    ++D I+LDL L    G E
Sbjct: 12  KILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPGKDGIE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K +TPV +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 72  VCKQLREKK-ATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTAN 130

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   L+++ DA  V   GH + LT KEY+++  L+   +    +E 
Sbjct: 131 SPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDREQ 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 191 LLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGYKFE 240


>gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 239

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 133/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K ++  +   LK + + V + + GEDG        +D I+LD+ L    G 
Sbjct: 17  MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR +  + PV +++    +++++ GL  GADDY++KPF  +EL+ARI+A+ RRS 
Sbjct: 77  SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S++  GDL VNL  + V   G  + LT +E+ ++E L       LT+   L H++ 
Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++DV + +LRKK+ +A    + IETV G GY +R+ 
Sbjct: 197 YDFDPSTNVVDVCVQRLRKKV-DAGHDVHLIETVRGAGYRMRKE 239


>gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
 gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193]
          Length = 239

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 158/228 (69%), Positives = 188/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILLVEDDPTTAKSIELMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    ++K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRMARIETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+  +D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQEDQ 228


>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
 gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ ++S  +   V + G+    +   Y+ D ++LD+ L +I G +
Sbjct: 7   KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R     TPV +L+      DKV GL+ GADDYI KPF  +E++ARI+A++RR   
Sbjct: 67  VLKWIRKE-YETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++    L++++++ TV  +   I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 + + +DV + +LR+KL    GG N+ IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLQ---GGPNWQIETVWGVGYKFE 226


>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 242

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFE 61
           I+++EDD A++  + L L  E + V      ++ ++  +  + D  I+D+ L   + GF+
Sbjct: 6   IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++R L+ ++   +TPV ILS      DKV GL+ G+DDY++KPFN  EL+ARI++I RR 
Sbjct: 66  LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125

Query: 120 RGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              AQ        I   DL ++ +   V V G+ + LT  E+ ++  L+  +    ++++
Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L+ L+      + + +DV I +LR K+        YI TV G+GY  R+  K+
Sbjct: 186 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKE 239


>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
           BAA-613]
          Length = 236

 Score =  286 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ +++   ++ + ++LDL L  I G++
Sbjct: 6   RILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELRASS-QVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +   DL VNL   +V   GH + +  KE +++  L+   N   T+
Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L+H++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--NSWAITTVWGIGYKFE 233


>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 224

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   +   L +E+++V     GE  ++     E+D +ILD+ +    G 
Sbjct: 1   MRILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R      PV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L V++D   V   G  I L+GKE+ ++  +   K   L++E    HL++
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +IDV+I  LRKK+  +   K  I TV G GYVL+E  
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKIDESFKEK-LIHTVRGAGYVLKEKV 224


>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus epidermidis VCU121]
          Length = 236

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ ++  +  + D I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +          I+   + +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEVEHNETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
 gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
 gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
 gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
          Length = 235

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S  +    +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 ASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K +   ++  ++ E + V V   GE  + L    ++D  ILDL +  I G 
Sbjct: 10  IRILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+  +   DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 70  EVCRKLRE-KTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q+ I   ++S+++    V  +G  I LT KE +++   +       TK  
Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++      +   + V I KLRKK+         I+TVWG GY    +
Sbjct: 189 LFRNVWGDNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKFVGD 239


>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 238

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A S+ + L  E   V VT  G  G+++ +  E D +ILDL L DI G  V
Sbjct: 12  ILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMVV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R LR    + P+ +L+    ++++V+GLQ GADDYI KPF+ +EL+AR+ A++RR+   
Sbjct: 72  CRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAGVS 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++    L+++ + + V + G ++ LT  E+ ++EL         T+E  L+ ++  
Sbjct: 132 RPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVWGF 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
               +  I++V +  LR+K+ +    +  I T++G GY LR   +DET 
Sbjct: 192 TYVGDSNIVEVHMSNLREKIGDH--ERKLIRTIYGVGYCLRP--EDETA 236


>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 233

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
          Length = 237

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 10/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L  E + V     G++ ++  +  + D ++LD+ L    G EV
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR +  
Sbjct: 65  CREIR-KKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVA 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + IV G L +  DA  V  +   I LT +E++++  L       +T+E 
Sbjct: 124 APAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV I +LR+K+ +      +I T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 237


>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
 gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Methylacidiphilum infernorum V4]
          Length = 268

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  I   L+ E F V     G++ + +     +DA +LD+ L    G 
Sbjct: 46  MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR   IS P+ +LS  S   DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ 
Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G+L++NL  + V     +I LT KE+ ++ELL        T+      +++
Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   ++DV+I KLRKK+ +    +  I+TV G GY + 
Sbjct: 226 YHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIE 266


>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 224

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   +   L +E+++V     GE  ++     E+D +ILD+ +    G 
Sbjct: 1   MRILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R      PV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L V++D   V   G  I L+GKE+ ++  +   K   L++E    HL++
Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +IDV+I  LRKK+ +    +  I TV G GYVL+E  
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKI-DEPFEEKLIHTVRGAGYVLKEKV 224


>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
          Length = 224

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 127/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A+ +   L  + + V +   GE G E  + + +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +  S PV +L+   + EDKV GL  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++  +  V      +HLT KEY ++EL    +N  L++   L++L+ 
Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I  LRKKL       ++IETV+G GY L++
Sbjct: 181 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 223


>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
 gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    + P+ +L+    +ED++ G   GADDYISKPF+  E+VAR++A++RR+ 
Sbjct: 61  EICKEIRKIS-AVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTD 119

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +     L ++     V      I LT  E++++  L+       ++   + 
Sbjct: 120 IETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +       + ++ID  I KLR+KL         I TV+G GY    + ++
Sbjct: 180 IVQGHDFGGDDRVIDAHIKKLRQKLEKVPSDPKIILTVYGVGYKFNPHQEE 230


>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  L   +   LK E ++V +   G DG+E  K   +D IILD+ L +I G 
Sbjct: 1   MRILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR   I+TP+ +L+   +++DKV+GL +GADDY++KPF   EL ARIRA++RR +
Sbjct: 61  QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL VN     V   G  I LT KEY ++E +       LT+   ++H++ 
Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    IIDV+I  LRKK+ +    K  I+T+ G GY L+E 
Sbjct: 181 YEFDGLSNIIDVYIRYLRKKIDDNFDIK-LIQTIRGSGYCLKET 223


>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 239

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +   + +  D  +LD+ L D+ GF 
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 LIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GYVLR
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 234


>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 234

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+   +   LK  N+ V   D G D ++  +    D +I+DL L  + G 
Sbjct: 3   MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+  SS  DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    ++++    TV+  G  + LT  E+++++ L    N  L+++  L
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      + +I+D+ I  LR KL +       I+T+ G GY
Sbjct: 183 EQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 237

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD  ++  + ++L++E+F V V   G+ G+E+     ++ IILDL L  + G+E+ 
Sbjct: 9   LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68

Query: 64  RALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           R LR   A  STP+ +L+  +   DKV GLQ GADDY++KPF   E +AR+ A++RR+  
Sbjct: 69  RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L++   +    ++   + LT KE++++ +L+     TL +E  L  ++
Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                   + ID  I +LR+K+S    G  +++TVWG GY L     D
Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKEND 236


>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
 gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  +A  + L L+ E F   V   G  G+E  + ++   ++LD+ L  + G+ 
Sbjct: 4   KVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMDGWT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    +TPV +L+     EDKV GL+SGADDYI KPF  +E++ARI A++RR+  
Sbjct: 64  VLKKIREES-ATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQ 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +    L +NLD+  + V G R+    KE +++  L+   N   T+   L+ +
Sbjct: 123 EEEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I +LR+KL      +  ++TVWG GY   
Sbjct: 183 WGFDYFGDSRTVDVHIKRLREKLEGV-SDQWRLKTVWGVGYKFE 225


>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 237

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +A  I+  L++E F+      G   +E  +  + D I+LDL L  + G 
Sbjct: 1   MKILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLPGLDGL 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D+V GL +GADDY+ KPF+  ELVARIRA++RR
Sbjct: 61  EVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S   G    +  T   +V+LD      Q        + L+  E+ ++  L         +
Sbjct: 121 SLRHGGQSQVYRTPHFTVDLDQHLAYRQLDPQTSEPLDLSPLEFNLLVTLVSYPGRVWNR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++ L+      + +++D  I +LRKK+        +I+TV G GY   ++
Sbjct: 181 TQLIDKLWGDDFFGDERVVDTHIARLRKKIEPDPTHPQFIKTVVGTGYKFEDS 233


>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 242

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +D+ +   ++ L L  E F   V + GE+ + L + +  D I+LD+ L  + G +V
Sbjct: 13  VLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+ +++  S   D V GL+ GADDY++KPF   ELVARIRA +RR++  
Sbjct: 73  CRTIRQES-SVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A+ ++ +  ++V +D   V+V+G  + L  KE+ ++ L        LT+++ L+ 
Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + K +DV + +LR K+       + I TV G GY L  +
Sbjct: 192 VWGSDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLERD 238


>gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
 gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597]
          Length = 238

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 159/228 (69%), Positives = 189/228 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV++I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRVSRIETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A GG NYIETVWGRGYVLR+   +E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGDNYIETVWGRGYVLRDPQPEE 228


>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R +K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVRESK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGYKIEKD 232


>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 236

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++      G++ + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
 gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 238

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +   +   L+ E + V + + G   ++L    + D ++LD+ L ++ G E
Sbjct: 7   KILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDGLE 66

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           V + +R      S P+ +LS    + D+V GL+ GADDY++KPF+  EL+ARI+A +R  
Sbjct: 67  VCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLREE 126

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R+     + +  GDL +  ++  V V+G  + LTGKE+ ++ +   R N   ++E  L 
Sbjct: 127 KRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLLQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + +DV I  LR KL         IE+V G GY L
Sbjct: 187 KVWGYTISGDTRTVDVHISNLRSKLK---SISPIIESVRGVGYRL 228


>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 233

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E +   +   GE  +     ++ + I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS      DKV GL+ GADDYI KPF  +E+VAR++A++RR   
Sbjct: 66  VCREIR-KNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +   DLS+NLD  +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L++++      + + +DV I ++R+K+ +       IETVWG GY   
Sbjct: 185 LLDNIWGYEYIGDTRTVDVHIKRIREKIKDHVHWN--IETVWGIGYKFV 231


>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
           TA208]
 gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
          Length = 227

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +     ++D +ILD+ L  + G 
Sbjct: 1   MKILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    S P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR R
Sbjct: 61  TICRKIRETS-SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYR 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              Q      LI T   S+N   + V + G  +  LT KE+ ++  L        ++E  
Sbjct: 120 ATGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKLS+    K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKLSSD--EKPFLYTVWGVGYKFDED 227


>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
 gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
          Length = 235

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 239

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 9/232 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +LL++D++ +   ++  L  E +   +   G   ++L +   FD I+LD+ L  + 
Sbjct: 1   MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R   I+TP+ ++S      DKV  L+ GADDY++KPF+  EL+AR++AI+RR
Sbjct: 61  GIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRR 120

Query: 119 SRGH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +          +    V   L V  D   V      ++LT KEY+++  L    N TLT+
Sbjct: 121 TEKDQTDDNDLSDEQWVVNGLRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      E +++DV I KLR+K+ +      +I+T+ G GY  +E
Sbjct: 181 ERLLERIWGYDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKFKE 232


>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
 gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
           15579]
          Length = 239

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  + G E
Sbjct: 12  KILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGEE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 72  VCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 130

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V  +G+ + LT  E++++  L        T+E  + 
Sbjct: 131 GKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 191 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 235


>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 228

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+ EN+       G++ ++L +   F  ++LD+ + ++ G  
Sbjct: 7   KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI A +RRS  
Sbjct: 67  ACMRIREFS-NVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G L ++ ++++V V G  I LT KE+ ++ L     +   ++E  L+ +
Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       ++ +D  I  LR KL  A G    I+TVWG GY   E
Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227


>gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
 gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37]
          Length = 238

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 157/231 (67%), Positives = 187/231 (80%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TD+GE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLSHANLNVYSTDMGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVA+I TP+ IL+G    + K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRVARIDTPILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDET 229
           G DEPE+KIIDVFICKLRKKLS A G  NYIETVWGRGYVLR  E ++DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDDNYIETVWGRGYVLRDPEPSQDEA 231


>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 223

 Score =  286 bits (733), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 130/223 (58%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +A  I+  L+ ++++V +   G +G++  +  E+   ILD+ +    G 
Sbjct: 1   MKILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR      PV +L+   + +D V GL++GADDY++KPF   EL+AR+RA++RRS 
Sbjct: 61  TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++  +  V   G+ I LT KEY ++E L    N  L++ M   H++D
Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    IIDV++  LRKK+      K  I TV G+GY+LRE
Sbjct: 181 YAFDSFTNIIDVYVNYLRKKVDKEYSTK-LIHTVRGQGYILRE 222


>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 241

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ E + +   + GE  ++     ++D I+LDL L  + G +
Sbjct: 9   RILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGVD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TPV +L+      ++V G ++G DDY+ KPF+  ELV R++A++RRS  
Sbjct: 69  VCRELRNKK-ATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         ++IV  +L+++ DA  V   G  + LT KEY+++  L+   +   T+E 
Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  I +LR+KL+ A       I TVWG GY L 
Sbjct: 188 LLRDVWNYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKLE 237


>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 290

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  ++  L++  F+V     G   + + +    D ++LDL L  I G E
Sbjct: 54  RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR  +   PV +L+      D+V GL++GADDY++KPF+  EL  R+R+++RR+  
Sbjct: 114 VCRRLREQRP-VPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRAAE 172

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  G L V+  A+TV   G  + LT +E+ ++  L        T+   L  ++
Sbjct: 173 PPRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLEQVW 232

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                 +   + V I +LR+K+ +       + TVWG GY   +     T
Sbjct: 233 GWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDQTPPRHT 281


>gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 235

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 162/226 (71%), Positives = 198/226 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LRV KI+TP+ ILSG++ IE+KVRGL  GADDY++KPF+K+ELVARI A+VRRS+
Sbjct: 61  EVLKSLRVGKITTPILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ + GG +YIETVWGRGYVLR+ A+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASTGGDHYIETVWGRGYVLRDPAE 226


>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
 gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
          Length = 244

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F V++ + G+    +      D I+LDL +    G  
Sbjct: 11  KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 71  ICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRRPA 130

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    Q ++  G    +L A+T+   G  + LT  E+ M++ L       +++E 
Sbjct: 131 PEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMSREK 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +        YI+TVWG GYV   + 
Sbjct: 191 LAQQARGREFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVFVPDG 242


>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 231

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 130/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++L L+ E +   +   G +G+   +  ++D I+LD+ L ++ G +
Sbjct: 4   RILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  +  TPV +L+  S +EDKV+GL  GA+DY++KPF  EEL+ARIR  +  S+ 
Sbjct: 64  VLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQK 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +  G LS+N   + V      I LT +EY ++  L       LT+E  L  ++
Sbjct: 124 VSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +  ++DV+I  +R+KL  A      I+T+ G GYVL+E++
Sbjct: 184 GYDYYGDTNVVDVYIRYVRQKLEAANPTP-LIQTIRGVGYVLKEHS 228


>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
 gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C101]
 gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus M809]
          Length = 247

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 71  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 130 TVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246


>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
 gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
           [Petrotoga mobilis SJ95]
          Length = 222

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 128/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ LA+ I+  L  E + + V   GE+     K+  +D IILD+ L    G 
Sbjct: 1   MKILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R   I+TP+ +L+   S+ D+V+GL SGADDY+ KPF+ +EL AR+R+++RR  
Sbjct: 61  TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++N   + V +   ++ LT KEY ++E         +T+ +    ++D
Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E    +IDV+I +LRKK+ +  G    +ETV G GY L
Sbjct: 181 IDFEGNSNVIDVYIRRLRKKIGDKEG--KILETVRGAGYRL 219


>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 236

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E F   + + GE+ + +   ++ + ++LDL L  + G+ 
Sbjct: 6   RILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDGYS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREMRAQSP-VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A             +   DL VNL   +V   GH I +  KE +++  L+   N   T+
Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L+H++      + + +DV I +LR+K+ + A     + TVWG GY   
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHASWA--LTTVWGIGYKFE 233


>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
 gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
 gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
           cremoris NZ9000]
 gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 233

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  ++  L  E F V+    GE+ +E  K  + D I+LDL L  + G +
Sbjct: 3   KILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R     TP+ ++S   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VAREIRKTS-DTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  + +  ++ G+L +N           ++ LT +E++++  L+      +T+E  
Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      +V+ +DV + +LR+K+ +      Y+ T  G GY +
Sbjct: 182 LETVWGYDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228


>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 224

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 133/224 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A+++   LK   + V +   GE G +  + + +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TPV +L+   +  DKV+GL +GADDY+ KPF+  EL ARIRA++RRS 
Sbjct: 61  ALCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N ++  V   GH +HLT KEY+++EL     +  L++   L+HL+ 
Sbjct: 121 TTLPPVLEWENLRLNPNSCEVNYAGHPLHLTPKEYKLLELFLRNTHLVLSRSQILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P  + + V I +LRKKL       + IETV+G GY L+++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLKAVGASPDLIETVYGLGYRLKQS 224


>gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
          Length = 224

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+  +S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+         I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221


>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 228

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    +ETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226


>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
 gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
           str. 73H25AP]
          Length = 235

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 ASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234


>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 227

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F+V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV  L+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 66  LCREVRKFS-KVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            ++    +   +L V+L    V  +G  + LT KE +++  L    N   T++  L +++
Sbjct: 125 ESEEKQAVSYPELYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 185 GYDYMGDSRTVDVHIKRLREKMGDGPNWK--LTTVWGVGYKFEVN 227


>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
 gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q     G + +N  ++ +EV G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 236

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   + +  D ++LD+ L D+ GFE
Sbjct: 12  RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R +R     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RR+  
Sbjct: 72  VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTST 131

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +   V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 GEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 192 NYDFRGDDNIVESYISYLRRKVDNV--EPRLIHTLRGVGYVLRKPA 235


>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 223

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q     G + +N  ++ +EV G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
           VCU121]
          Length = 233

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++V+    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV I +LR+K+ +      YI T  G GY L+++
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232


>gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
 gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2150]
          Length = 237

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 154/236 (65%), Positives = 186/236 (78%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+ML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIEMMLTHANLNVYSTDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+AK+ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLAKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVE     +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+    +  + L  A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLATDGDNYIETVWGRGYVLRDPVAADGPDVLAQA 236


>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   + L L+ E   V     GE  + L +    D ++LDL L  + G EV
Sbjct: 4   ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R L  +   TPV +L+  S   D++ GL  GADDY+ KPF+  ELVAR+ A++RR    
Sbjct: 64  CRRL-QSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQPQ 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    +  I  G L V+   + V+V G  I LT +E+ ++  L+  +    T++  + 
Sbjct: 123 PDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   + V I +LR+K+ +      Y++TVWG GY L
Sbjct: 183 LVWGYTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227


>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 233

 Score =  285 bits (732), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +       L+   F V     G   + L +      ++LDL L  + G +V
Sbjct: 5   ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMDGLDV 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RALR   ++   P+ +L+      D++ GL+ GADDYI+KPF+  ELVAR+RA++RRS 
Sbjct: 65  TRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRSE 124

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G       I  G L ++L+ ++V   G  I LT  E+ ++ +L+       T+   L+ +
Sbjct: 125 GSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           Y+       + ID  I  LR+K+   + G    I TV+G GY   E 
Sbjct: 185 YNTEYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKFAET 231


>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 252

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---------EFDAIILDL 52
           RIL++ED+  +   I L L+ E + +   + G   + L +           EFD ++LDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR   +   + S+    D+++      V V    I L+ KEY+++EL         
Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 251


>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 237

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 10/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L  E + V     G++ ++  +  + D ++LD+ L    G EV
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR +  
Sbjct: 65  CREVR-KKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVV 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + IV G L +  DA  V  +   I LT +E++++  L       +T+E 
Sbjct: 124 TPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV I +LR+K+ +      +I T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRNPEQE 237


>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 799

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 135/230 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ LA  I+  LKS+++ V +   G+ G+EL + +E+D I+LDL L  + G 
Sbjct: 1   MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  +  R     TP+ +++G      KV+ L +GADDY+ KPFN +EL+AR+RA++RR  
Sbjct: 61  QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+  G L++N  +  V  +G  IHLT KEY ++EL    +N   ++   + HL+ 
Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             + P    +   I  LR+KL  A    N IETV+G GY L +N  D+T 
Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKNVLDQTS 230



 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  L   I+  L+   F++ + +  +   ++ +    D +ILD+ + +I G E
Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R        P+  LSG    +    G Q+GADDYI KP    ELV RI
Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611



 Score = 62.6 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP--G 59
            +L++++D  L  SI    K       V        E       D I+LD+G  D     
Sbjct: 374 HLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEIC 433

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+L+ +R      P  I S  ++   +V+  + GA  ++ KP   E ++  I  +V+ +
Sbjct: 434 LELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETIVKVVQPT 493

Query: 120 RGHAQSLIVTGD 131
                 +++  D
Sbjct: 494 CFPTAKIMIVDD 505


>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  ++ V +   G++G++     ++D IILD+ L  + GFE
Sbjct: 3   KILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R    + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     +++    L+++  A+ V V G  +  T KE+ ++       N  L+KE    
Sbjct: 122 LASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +V  + V I KLR+K+        ++ETVWG GY L
Sbjct: 182 RNWGYESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRL 226


>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 244

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + +        D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V   G  + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR   +
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRGGGE 244


>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 238

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 130/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ E+++V   + GE  +++    E+D I+LDL +  I G E
Sbjct: 6   KILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCEEIRKHK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L+++ DA  +   G  I+LT KEY+++  L+   +    +E 
Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  I +LR+KL+  +    N I TVWG GY   
Sbjct: 185 LLKDVWNYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGYKFE 234


>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 236

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L  E + V     G + +      + D I+LD  + ++ G E
Sbjct: 4   KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K   P+ +L+  +   DK+ G + G DDY+ KPF+  EL ARI+ I++R   
Sbjct: 64  VLREIR-KKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + + ++  GDL++    + V ++G  + LT  E++++E          ++   L + 
Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA-KDE 228
                E   + ID  I  LRKK+        YI+TV+G GY L+    KDE
Sbjct: 183 IGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGEKDE 233


>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  285 bits (732), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 232

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ + +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+   TV V G  + LT +E+ ++ELL        + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232


>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
 gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
          Length = 226

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +A  +EL LK++ F VY    G + ++     + D  ILD+ L DI G 
Sbjct: 1   MKVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    + P+ +L+   +  DK+ GL  GADDY++KPF   EL+AR++A +RR +
Sbjct: 61  EICQTIRE-NYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++++  G L+++ D     +    + LT  E+ ++ LL   K   +T +    
Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179

Query: 177 HLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+  +        I V I  LR+K+ ++A    YI+TVWG GY +
Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGYKI 225


>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 232

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   +   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 249

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 19  RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 79  PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI      D+S+N     V V+G  + L+ KE++++EL         ++
Sbjct: 139 LLRRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 199 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 248


>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 232

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  + +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +   +  +  GD+ V+   +TV+     + L+ KE+++++LL   K   L ++  
Sbjct: 121 RVESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Selenomonas sputigena ATCC 35185]
 gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 234

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDKA+A      L++ +F+V +   G++G E     +FD I+LDL L    GF 
Sbjct: 3   RILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLMLPSADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R  K  TP+ ++S      DKVRGL  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  VCRAIRQKK-DTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I TG L +  +A+ V   G  + LT +E+ ++   +       +K+   
Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      +   + V I ++R+K+        YIETVWG GY  +
Sbjct: 182 DRIWGMDALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGYRFQ 228


>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   + + L+ E +++  +  GE  ++L    ++D I+LD+ L  + G EV
Sbjct: 7   ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K +TPV +L+      ++V G + GADDY+ KPF+  E++ R++AI+RRS   
Sbjct: 67  CARLRQFK-TTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSAT 125

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E  
Sbjct: 126 AFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREEL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
           L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKLE 234


>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  ++  I L L  E +       G   +E+ + +  D ++LD+ L ++ G++
Sbjct: 3   KILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R     TP+ +L+    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR+  
Sbjct: 63  VCKEIRKQH-RTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNTQ 121

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ IV  +L ++ D  +V  +G  + L  KE +++  L+       T+E  L+
Sbjct: 122 PIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLLD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR K          I+TVWG GY   
Sbjct: 182 KIWGYDFVGDTRTVDVHIKRLRDKFEGD--HTWSIKTVWGVGYKFE 225


>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 229

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 6/211 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   ++  L+ E + V V   GE+ + +      D I+LDL L  + GFE
Sbjct: 3   RVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      DK+ GL+ GADDY++KPFN  EL AR++AI+RRS+ 
Sbjct: 63  VCRNIRKTS-DVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQS 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +       +I   DL ++L    V V+   + LT KE+ ++ L++       ++E  L 
Sbjct: 122 SSGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGG 207
           H++      + + +DV I  LR+K+    G 
Sbjct: 182 HVWGYDYYGDARTVDVHIRHLREKIEPDPGH 212


>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
 gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
          Length = 228

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK+EN+NV+     ++ +   +    D  ILD+ +  I GF
Sbjct: 1   MNILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ +R    + PV +L+      DK+ G   GADDYI+KPF   EL+AR++A +RR  
Sbjct: 61  TVLQKIRET-YNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S    ++ I    L +N + + V +   ++ LT  E+ ++  L   +   ++ E  
Sbjct: 120 LYNQSSKPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       + V I  LR+K+ ++     +I+TVWG GY + +
Sbjct: 180 FQEIWGEKYFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTIEK 228


>gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 233

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 175/229 (76%), Positives = 200/229 (87%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE N  DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPNEADE 229


>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
 gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
          Length = 233

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ +E+ +  + D +ILDL L ++ G +
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              S         +  GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232


>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
 gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
          Length = 235

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 ASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 236

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +    D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus helveticus H10]
          Length = 238

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 232

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 135/232 (58%), Gaps = 6/232 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++ +   ++  L+ E +N +  D G   +E+ K  + D +ILD+ ++D  G
Sbjct: 1   MKNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +EVL+ +R  K +   PV +LS  S   DK+ GL+ GADDYI+KPF+ +ELV R++A++R
Sbjct: 61  YEVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLR 120

Query: 118 RS---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    R   +  +  GD+ V+   +TV+     + L+ KE+++++LL   +   L ++  
Sbjct: 121 RVESLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    + + + +DV I  LR+KL +      YIETV G GY   E ++
Sbjct: 181 LQRVWGYEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNERSE 232


>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
 gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
          Length = 234

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVRA-KANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+H++      + + +DV + +LR+K+ +       + TVWG GY   
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230


>gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
 gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus]
 gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus
           SB 1003]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 154/224 (68%), Positives = 185/224 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ IL+G    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+   GG+NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEVTGGENYIETVWGRGYVLRDP 224


>gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
 gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748]
          Length = 224

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+         I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221


>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 228

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                I    GD+S+ +    V V+G  +    KE++++E L   K   +T+   ++ ++
Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV + ++R K+        Y+ TV G GY +
Sbjct: 182 GSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKI 223


>gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 163/227 (71%), Positives = 198/227 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKS+ FNVY TDLGE+G++L K Y++D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDGATAQSIELMLKSDGFNVYTTDLGEEGVDLGKLYDYDIILLDLNLPDMTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LRVAK++TP+ IL+G+   E+KVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  DVLKSLRVAKVNTPILILTGLGDTENKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL+ A  G++YIETVWGRGYVLR+ A++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATDGEHYIETVWGRGYVLRDPAEE 227


>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +E  K  E+D I+LD+ L    GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQMIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGK 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++I+  D+ ++  ++ V V G  I+LT KE+ ++ELL+   +   ++E  LN
Sbjct: 123 SVKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYFR 228


>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 224

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +   I+  L  E ++V     G   +      ++  I+LD+ L    G 
Sbjct: 1   MKVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K   PV +++  S +EDKV GL +GADDYI+KPF+ +E++ARI A++RR +
Sbjct: 61  KVLSRIREVK-DIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I  GDL +N  +  V  +G  I LT +E++++++L+      L++E     ++ 
Sbjct: 120 KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   ++DV+I  LR KL +       I TV G GY+L+  
Sbjct: 180 SSYGENSNVVDVYIKNLRNKLEDRP--PKLIHTVRGMGYMLKPQ 221


>gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 237

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 155/226 (68%), Positives = 187/226 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ IL+G    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVETPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIRTGKVAVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ A 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATGGQSYIETVWGRGYVLRDPAP 226


>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 233

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RRS  
Sbjct: 69  VIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSAS 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +A  V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNT--QPRLIHTLRGVGYVLRKPA 232


>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
 gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
 gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
 gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
 gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
 gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
 gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
 gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
 gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
 gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus C427]
 gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A10102]
 gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus A9765]
 gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8117]
 gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus A017934/97]
          Length = 247

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 11  ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 71  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 129

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 130 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 190 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 246


>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
 gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Staphylococcus haemolyticus JCSC1435]
          Length = 236

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ +E     + + ++LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++          I+  ++ +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 ASEIEKADVDDEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 246

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 125/242 (51%), Gaps = 20/242 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+  +A  +   L  E + V     G++        ++D IILDL L  + G E
Sbjct: 3   RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS 119
           V R +R  + +  PV +L+  S   +K+ GL+ GADDY++KPF+  EL+AR++A +R R+
Sbjct: 63  VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122

Query: 120 ------------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
                             R  ++ +   G LS+  +     ++   + LT KE++++ ++
Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  LT+E  L  ++      + + +DV I  LR+K+S A G  + +ETV G GY L
Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242

Query: 222 RE 223
           +E
Sbjct: 243 KE 244


>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
 gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
          Length = 235

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++   I   LK  NF V     G + + L KF + D ++LD+ L D+ GF+
Sbjct: 4   RILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +     S  V +L+      DKVRGL+ GADDYI KPF+  ELVARI+AI+RR+  
Sbjct: 64  VCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAGK 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S  I  G   V+++A+++      +  T +E+ ++++     N   T++  LN ++ 
Sbjct: 124 QNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV I ++R+K+ +      YIET+WGRGY+ R+
Sbjct: 184 EDFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGYLWRK 226


>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
 gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
          Length = 227

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E + V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V RA+R      P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R  
Sbjct: 64  VCRAIRRVS-DAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DLS+++    V+ +G  I LT  E+ ++  L+       ++E  L  ++ 
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 233

 Score =  285 bits (731), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E + V     GE+G+ L +  E   ++LD+ +  + G  +
Sbjct: 6   ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREEK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  G++ +N+    V V+G  + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232


>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 236

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + I   +  + D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQH 235


>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
 gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
           13479]
          Length = 234

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 133/233 (57%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I   L+ +N  V     GE+ I L K  E+D ++LD+ L    G+E
Sbjct: 3   RILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 63  VCQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +++ +GDL ++ D++ V +    I+LT KE+ ++ELL+   N   ++E  
Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181

Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L +++     D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R  +
Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFRAQS 234


>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
           BEST195]
          Length = 251

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 19  KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 79  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 198 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 251


>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 237

 Score =  285 bits (731), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 237

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
 gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium
           zucineum HLK1]
          Length = 231

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 163/226 (72%), Positives = 193/226 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRV KI+TP+ ILSG + IE KV+    GADDY++KPF+K+ELVARI A+VRRS+
Sbjct: 61  DVLRTLRVGKINTPIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD++VNLDAKTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ AA GK++IETVWGRGYVLR+  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAAADGKHHIETVWGRGYVLRDPQE 226


>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 224

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 129/223 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   LK   + V +   GE G +  + + +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR A   TPV +L+   +  DKV+GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  DLCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++ + K V   G  +HLT KEY ++EL     +  L +   L HL+ 
Sbjct: 121 TALPPVLEWENLRLDPNTKEVTYAGKPLHLTPKEYGLLELFLRNSHMVLNRGQILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I +LRKKL +     + IETV+G GY L++
Sbjct: 181 FEDPPSEEAVKVHIKELRKKLRSVGASPDSIETVYGLGYRLKQ 223


>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++  +I   LK    +V     GE  I        D +ILD+ L  I GF+
Sbjct: 3   RILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R +  S P+ +L+      D+V GL+ GADDY++KPF+  EL+AR++A++RR   
Sbjct: 63  VCRHIRRSS-SVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + +   G L ++  A  V   G  + LT KE  ++  L+  +      
Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  ++      + + + V I  LR+KL         IETV G GY L
Sbjct: 182 RRILEAVWGYDYYGDNRTVAVHIHGLREKLEEDPRQPRLIETVRGVGYRL 231


>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
 gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L  +   V     GE+ +EL K  E+D ++LD+ L  + GF 
Sbjct: 4   RVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIRDFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGR 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     +++V  D+ ++ +++ V +Q   I+LT KE+ ++ELL+   +   ++E  LN
Sbjct: 123 KEEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 LVWGYEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYFR 228


>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
 gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
           29799]
          Length = 234

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K +   +   L  E +       G+ G++L    + D ++LDL L  + GF+
Sbjct: 4   RILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R++R    +TPV +L+      DKV GL+ GADDYI+KPF+  EL+AR++A +RR   
Sbjct: 64  VCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRREM 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     + +  G +SV+ D       G  + LT +EY+++  L+ R     ++E 
Sbjct: 124 AGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSREA 183

Query: 174 FLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++++      +V+ +DV + +LR+K+ +       I T  G+GY+L
Sbjct: 184 LMENVWNYEGYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLL 232


>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 225

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 133/225 (59%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +   L  E ++V V   G  G+E+     +D ++LDL L  I GFE
Sbjct: 3   RILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  + P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIRA +RR + 
Sbjct: 63  VARRIRAAS-NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++   +L+++  ++ + V   R+ LT KEY ++EL     N  LT+++  + +++
Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                E  II+V++  LR+KL    G    I TV   GY+LRE+A
Sbjct: 182 YDFGGESNIIEVYVRYLRQKLEAN-GEPRLIHTVRSVGYILREDA 225


>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +   L  + + V     GE+G++  +    D +ILDL L ++ G E
Sbjct: 7   RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGEE 66

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R LR       P+ IL+   + EDK+ GL +GADDYI+KPFN EEL+ARIRA +RR +
Sbjct: 67  VCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRRQ 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S+I  GDL++NL ++       ++ LT +E+ ++E L+  +   ++KE     ++ 
Sbjct: 127 PQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   + V+I  LR KL  A G  + I T+ G GY+LR  
Sbjct: 187 YSFDIDSDAVKVYISYLRSKL-TAGGEPDMIHTIRGIGYMLRAP 229


>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 237

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231


>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
 gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
          Length = 236

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ ++  +  + D I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +          I+   + +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEVEQSETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 236

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yclJ
 gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis]
 gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 227

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +I T   ++N   + V + G  +  LT KE+ ++  L        ++E  
Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
 gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
          Length = 235

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVRA-KANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+H++      + + +DV + +LR+K+ +       + TVWG GY   
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230


>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
 gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
           [Thermocrinis albus DSM 14484]
          Length = 226

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  L   +   L+ E F V     G   +       +D +ILD+ L    G +
Sbjct: 3   RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   PV +++  S IEDKV GL +GADDYI+KPF+ +EL ARI+A++RR R 
Sbjct: 63  VCRKIRETK-DIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I+ GDL ++  A  V  +G +IHLT +E+++++LL+   N  +++E     ++  
Sbjct: 122 K-EGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E    I+DV+I  LR KL +       I+TV G GY+LR
Sbjct: 181 SHEEGSNIVDVYIKNLRNKLGDKP--PRLIQTVRGYGYILR 219


>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 237

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 122/235 (51%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F V     GE+ ++       D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    I  G+L +  DA  VE  G +I LT +E++++  L+      +T+E
Sbjct: 123 VQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L   +      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237


>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 228

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L+   +       G   +       FD +ILDL +  + G  
Sbjct: 3   KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R   I+TPV IL+      DK+ GL+SGADDY+ KPF+  ELVAR+RA++ R+  
Sbjct: 63  CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTMP 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G+L+++  + TV V G  + LT KE+ ++  L+  K   L++E  L  +
Sbjct: 123 RPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     E + +D  +  LR  L      ++YI TVWG GY    +A
Sbjct: 183 WNYDYFGEDRTVDTHVKMLRGHLG---KCRSYIATVWGIGYKFDPDA 226


>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 228

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   + L L  E +NV +   G   +        D ++LD+ +  + G+E
Sbjct: 5   KILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      DKV GL+ GADDYI KPF+ +E+ ARI+A++RRS  
Sbjct: 65  VCRKIRA-KDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +       +L ++++   ++V+G  +    KE +++  L+   N   T++  L+ ++
Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + IDV + +LR+KL   A  K  ++TVWG GY   
Sbjct: 184 GFEYYGDSRTIDVHVKRLREKLE-GASDKWNLKTVWGVGYKFE 225


>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 252

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---------EFDAIILDL 52
           RIL++ED+  +   I L L+ E +++   + G   + L +           EFD +ILDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR   +   + S+    D+ +      V V    I L+ KEY+++EL         
Sbjct: 140 RALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++E  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 SREQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGYRF 251


>gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 233

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 172/224 (76%), Positives = 197/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFN Y TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNTYTTDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LRVAK+ TP+ ILSGM+ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGKNYIETVWGRGYVLREP 224


>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 257

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 110/231 (47%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +A  +   L      V     G   +     +  D ++LDL L  + G E
Sbjct: 18  HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 78  VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRP 136

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L+++  A+     G  + LT +E+ ++           ++E  +  ++ 
Sbjct: 137 DPAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWG 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                ++  + V I +LR K+ +       I TVWG GY       +ET E
Sbjct: 197 WEF-GDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE---AEETGE 243


>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 236

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 121/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +    +  L+ E + VY    G +G ++   ++ D IILDL +    G+E
Sbjct: 3   KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 63  LCGEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I   DL +    + V V  + + LT KE++++ +++       ++   
Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL       ++I TVWG GY    N ++E+
Sbjct: 182 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGRNES 236


>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 250

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           R+L++ED++ +   + + L+ E + V     G   +EL +  E       FD ++LDL L
Sbjct: 20  RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR    S P+ ILS   S  D+V GL+ GADDY++KPF+  E+VAR RA
Sbjct: 80  PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139

Query: 115 IVRRSRGHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR R     LI      D+++N     V V+G  + L+ KE++++EL         ++
Sbjct: 140 LLRRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++      + K +DV I  LR+KL        YI TV G GY  
Sbjct: 200 EQLLDQVWGPDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 249


>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 26  RILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 86  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 145

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++   +     G  I LT +E+ ++   +       ++   L
Sbjct: 146 LAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 205

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++  + E     ++  I +LR K+         I TVWGRGY L    +
Sbjct: 206 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGE 256


>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ E + +   + GE  + L    ++  I+LD+ L  I G E
Sbjct: 7   RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCSRLRQVK-ATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV   L +  DA  V   G  + LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +    + I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLE 235


>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 230

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   F V     G   I      E D IILD+ L D+ GF 
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR A  + P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+  
Sbjct: 66  VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMH 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 126 ADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+KL   +     I+T  G GY+L+
Sbjct: 186 YDFNGDAGIVESYISYLRRKLDQHSSEP-VIQTKRGFGYMLK 226


>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 234

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ ++  + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVRA-KANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   DL VNL   +V  + + I +  KE +++  L+   N   T+E  
Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+H++      + + +DV + +LR+K+ +       + TVWG GY   
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDNDSWS--LSTVWGIGYKFE 230


>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 241

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++ +   +++ L+ EN+ +     G   +E     ++D I+LDL L    G 
Sbjct: 8   IHILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLMLPGKDGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 68  EVCKEIREHK-TTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      + ++V   L+++ DA  V V G  + LT KEY+++  L+   +    +E
Sbjct: 127 NATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
             L  ++      +++ +D  I +LR+KL+ A       I TVWG GY   
Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
 gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
           equigenitalis MCE9]
          Length = 247

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 117/235 (49%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L  + + V   + G++  + C+   F+ I+LD+ L    G  
Sbjct: 10  KILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR     TP+ +L+  S   D++ GL+ GADDYI KPFN  EL+ARI A++RR+  
Sbjct: 70  ICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNTV 129

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +  G   +NL  +T+      + +T  E+ ++++ +      L++ 
Sbjct: 130 EFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSRY 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +        E   + +DV I ++RK +        +I+TVWG GYV   + ++
Sbjct: 190 KLMELARGKEYENFDRSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVFVPDPEN 244


>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  IILDL L  + G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPKLSGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +  + P+ +L+     EDK+ GL  GADDY++KPF+  +LVAR++A++RR+  
Sbjct: 66  VCSKIRESS-NVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V   G  + LT  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 225

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++     ++L L+ E F V     GE+G+E  +   +D +ILD+ L  + GF 
Sbjct: 3   RLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      D++ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  GDL +N+  + V  +G +I LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+KL +      YI T WG GY ++
Sbjct: 182 WGVDFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYMK 225


>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 224

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/225 (40%), Positives = 141/225 (62%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDDK L+H I   LK E F V      E+G+    + E+D I+LD+ L  + G+
Sbjct: 1   MKVLIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIMLPKMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  K+ TP+ +LS    IEDKV+GLQ GADDY++KPF+  EL+ARI A++RR++
Sbjct: 61  EVIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTK 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S +   DL+++L  K V   G +I+LT KE+++++ L       +T+ M L +++
Sbjct: 121 TIEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVF 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  ++DV I +LR+K+      K  I TV G GYVL+ +
Sbjct: 181 DIDFDIDSNVVDVHIHRLREKIDKRF-EKKLIHTVRGFGYVLKSD 224


>gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 167/224 (74%), Positives = 197/224 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A  IELMLK+E+FNVY T+LGE+G++L K YE+D I+LDL L D+ GF
Sbjct: 1   MRVLLIEDDSATARGIELMLKTESFNVYTTNLGEEGVDLGKVYEYDIILLDLNLPDMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRVAK+ TP+ ILSG+++ EDKV+G   GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL VNLD KTVEV+ +R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+NA+ GKNYIETVWGRGYVLRE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASAGKNYIETVWGRGYVLREP 224


>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  285 bits (730), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   + +      F V     G + +   +  + D +ILD+ +  + GFEV
Sbjct: 6   VLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVLDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+  +  +D++ GL+ GADDY++KPFN +E+VAR++AI+RR+   
Sbjct: 66  CQQIRKYSP-VPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q     ++   +L +N+   TV   G  + L  KE +++  L+      L++E  L  +
Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + + +D  + +LRKKL         I+TVWG GY   
Sbjct: 185 WDYSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGYKFE 228


>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
 gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
 gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
          Length = 224

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I   LK  NF+V     GE+ +E   +  +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   SIEDK++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL +++  KTV   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRGGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DIGNSKPLIHTKRGLGYVLKED 223


>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 228

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED K     ++  L +  F+V   + G  G+ L + ++ D ++LDL +  + G E
Sbjct: 5   KILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGMDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R ++        PV +L+      DK+ GL+ GADDYI KPF+  ELV RI+A++RR+
Sbjct: 65  VCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRRA 124

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G    A        L ++ +A  + V G    LT  E++++ +L        T++  L+
Sbjct: 125 GGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   E   + +D  + +LR+KL   A    +IETV G GY  R
Sbjct: 185 TVWDTHFEGYSRTVDTHVRRLRQKLGPYA---EWIETVRGVGYRFR 227


>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus pseudoporcinus SPIN 20026]
          Length = 242

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 126/242 (52%), Gaps = 12/242 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +LL++D++ +   ++  L  E +   + + G   ++L     +D I+LD+ L  + 
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R   I TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++AI+RR
Sbjct: 61  GIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRR 120

Query: 119 SRGH----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +             A+   +  D  +  +   V      ++LT KE++++  L    N T
Sbjct: 121 TDKEDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMT 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LT+E  L  ++      E +++DV I KLR+K+ +       I+T+ G GY  +E   +E
Sbjct: 181 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQFKEKQDEE 240

Query: 229 TC 230
             
Sbjct: 241 KS 242


>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A   +       +   +   G+DG++     ++D IILD+ L  + GFE
Sbjct: 3   RILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  ++  P+ I+S  +   DK+RG   GADD+++KPF+  ELVAR +A + R   
Sbjct: 63  ICKTIRE-RLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   +L++N  +  V V    + LT KE++++  ++   N   +K+  
Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++      ++  + V I ++R+KL        +IETVWG GY  
Sbjct: 182 FEKIWGLDSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGYRF 228


>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus AH1134]
 gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 237

 Score =  285 bits (730), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G++G +L   ++ D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E + V +   G D +        D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S PV ++S      DKV GL+ GADDY++KP++  ELVARIRA++RR + 
Sbjct: 63  VCRQIRQTS-SVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  G + ++++   V V G    L  KE++++E+        LT+   ++ ++
Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV + +LR K+    G   Y+ TV G GY  
Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKF 223


>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
 gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
          Length = 226

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA+ I+  L+ E + V +   G+  IE+   ++   +ILDL L  + G+E
Sbjct: 3   RILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ ILS      DKV+GL  GADDYI+KPF   EL+AR+ A +RRS+ 
Sbjct: 63  ICQNIR-IKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  +   DL    +      VE  G  + L+  E++++  LS       ++E     +
Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      ++  + V I +LR+K+ +      YI TVWG GY   
Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 234

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L+   + VY    G++ + + +      I+LDL L D+ G E
Sbjct: 7   KILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLMLPDLSGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ +L+  +  ED ++GL  GADDYI+KPF+ ++LVAR+ A++RR+  
Sbjct: 67  ICKIIR-KKSRVPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRRTSD 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                        GDL ++     V    + ++LT  EY+++  L      T T++  +N
Sbjct: 126 DPVPLSNIFSFNNGDLVIDSLKYEVRKGNNVVNLTPNEYKILMTLVKYPGKTFTRDELIN 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  +   + +D  I  LR+K+        YI TV G GY   
Sbjct: 186 MALGDDFDGFDRTVDTHIKNLRQKIETDPKSPKYILTVHGVGYRFE 231


>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
           ATCC 33693]
          Length = 224

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I   LK  NF+V     GE+ +E  ++  +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   SI+DK++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL +++  KTV   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNTSNTMEIDDLCIDIAKKTVVRAGKNIELTGKEYEVLEYLIQNKGHVLSRDKIRDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YGYEGESNIIDVLIKNIRKKI-DVGNSKPLIHTKRGLGYVLKED 223


>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   L +  + V   + G D ++L K      ++LDL +  + G++
Sbjct: 5   KILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V +A+R         V +L+      DK+ GL+ GADDY++KPF+  EL+ARI+A++RR+
Sbjct: 65  VCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRRT 124

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  G ++ +  T  + +N + + V +   +I LT KE++++E+L   +   LT+E  L+ 
Sbjct: 125 KSLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      E + +DV I  LRKK+        +IET+ G GY    N
Sbjct: 185 IWGYEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231


>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 238

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +A  I L L  E + +     G + + L +    D +ILD+ +  + G+EV
Sbjct: 8   ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +R +R  +   P+  LS  +S  DK+ GL  GADDY++KPFN  EL+AR+ A +RR R  
Sbjct: 68  VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA S IV G L+++ + + V +   RI LT KE+ ++ LL+       + E 
Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187

Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++     E     + V I  LRKKL      + +I+TVWG GY  +
Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQ 237


>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 233

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F+V     G   +   K +  D ++LD+ L D+ GFE
Sbjct: 9   RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   + +DK+RGL  G DDY++KPF+ EEL ARIRA++RRS  
Sbjct: 69  VIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSTS 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +   DL ++ +A  V   G R+ L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 GEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +  I++ +I  LR+K+ N       I T+ G GYVLR+ A
Sbjct: 189 NYDFRGDDNIVESYISYLRRKVDNT--QPRLIHTLRGVGYVLRKPA 232


>gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000]
 gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName:
           Full=Response regulator SokA
 gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15]
 gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus
           CB15]
 gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000]
 gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 231

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 160/224 (71%), Positives = 193/224 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRVAKI+TP+ ILSG S I+ KV+    GADDY++KPF+K+E++ARI A+VRRS+
Sbjct: 61  DVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAHGKHHIETVWGRGYVLRDP 224


>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++  ++  L+ E F V     G + I L     +D IILD+ L    GFE
Sbjct: 9   RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR +   TPV +L+ + S++++V+GL +GADDY+ KPF  +EL+AR+ A++RR R 
Sbjct: 69  VCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPRE 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DLS++  + TV+     I L+ KEY+++E L+   +  L++      ++D 
Sbjct: 129 SFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWDQ 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++DV+I  LRKK+ +       I TV G GY L
Sbjct: 189 DFFSDSNVVDVYIRYLRKKI-DDPFPTKLINTVRGFGYKL 227


>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 238

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 127/235 (54%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  ++      I  G+L +  DA  VE  G +I LT +E++++  L+      +T+
Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++ ++
Sbjct: 183 EHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYVKQPSE 237


>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 250

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED+  +   + L L+ E + V     G   +EL +  +       FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R +R    + P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   S   A  +    D+ +      V V+G  I+L+ KE++++EL         ++
Sbjct: 140 LLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIEQVWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 230

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++++D++A+  S+   L    + V++   G + +E+ +  + + +ILD+ +  + G 
Sbjct: 1   MKIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR +    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +Q  +   DL +N D + V   G  I LT  E+ +++LL       L++   L
Sbjct: 121 AESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V+I  LR+K + + G    I TV G GYVLRE A 
Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRETAP 230


>gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 224

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPVLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNEGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIKVGPLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+         I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221


>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
 gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
           ATCC 33030]
          Length = 224

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F       G   +   +  + D ++LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLPGMSGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+  +   D V GL+SGADDYI+KPF   EL+ARIRA +R++  
Sbjct: 64  ICKEIRKES-NVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNSE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL V++    V   G  I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 EPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+ +       I TV G GY 
Sbjct: 183 RNASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGYK 221


>gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
 gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44]
 gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27]
 gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412]
          Length = 224

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L       L++EN  V     G+  I+      +D I++D+ +  + G 
Sbjct: 1   MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R    +TPV +L+   S++DKV GL +GADDY+ KPF+ EEL ARI A+ RR+ 
Sbjct: 61  SALAQMRNDGNTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HAQ+ I  G L++N+  +TV+  G  I LT KE+ ++  L+  +N  L+++  L+H+++
Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +IDV+I  LRKK+         I+TV G GYVL+
Sbjct: 181 YDYESYSNLIDVYIKDLRKKIDTD-ENVKLIQTVRGVGYVLK 221


>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 342

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I   L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S GH +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   ++     
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++         + V I K+R K+   +    YI+TVWG GY +
Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
 gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 255

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L    +NV + + G   +E+    +   +ILD+ +  + G 
Sbjct: 24  MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VRRS 
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT+  
Sbjct: 144 VESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++          ++V+I  LR+K +   G    I TV G GYVLRE A 
Sbjct: 204 ILEEVWGYDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETAP 255


>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 230

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  IE  LK + F V +   GE  +E  K   FD IILD+ +  I GF 
Sbjct: 4   KILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   P+ +L+      DK+ GL+ GADDY+ KPF+  EL AR++AI+RR   
Sbjct: 64  VLRELRKTR-HIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       I  GDL ++L    ++ +G  I LT +EY++++ L+       ++E  L
Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++D     +++ +DV + +LR+K+ +      YI T  G GY  
Sbjct: 183 DQVWDYEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYF 228


>gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 233

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 172/226 (76%), Positives = 200/226 (88%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASDGRNYIETVWGRGYVLREPSE 226


>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
 gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
          Length = 231

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   LK E F   V D GED + L     +D  +LD+ L  + G+E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +K + PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +    ++++ DA T       I LT +E++++  L       +++E  L  
Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +      E K +D  I +LR K+ +A      +ETV G GY  ++
Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRFKQ 231


>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
          Length = 237

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F V     GE+ ++     + D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    I  G+L +  DA  VE  G +I LT +E++++  L+      +T+E
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L   +      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237


>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
 gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
          Length = 244

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 68  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243


>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 238

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ EN+ +   D G+D +      ++D I+LDL L    G E
Sbjct: 6   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPGRDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKEIREKK-ATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAAN 124

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   L+++ DA  V V G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  I +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFE 234


>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 239

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F+V     G + +   + +  D  +LD+ L D+ GF 
Sbjct: 12  RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     +DKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 MDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GYVLR
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVLR 234


>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
 gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
           10379]
          Length = 234

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A+ +E  LK E ++V V + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVRAKK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +          +V  D+ +  +A  ++  G  I LT +E+ +   L+  +   LT+E 
Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ + +    YI T  G GY + E 
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGEE 234


>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 238

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 109/225 (48%), Gaps = 1/225 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +  +I   L+      +    G +   L   +  D ++LD  L  + G  +
Sbjct: 14  ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
               R  +   PV +L+  +  + +VR L  GADDY+ KPF+ +ELVAR++A++RR+   
Sbjct: 74  CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +       L V+ + + V++ G  I L  +E+ ++  L+       +++  L  ++  
Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             E   + IDV + KLR+KL        Y+ TVWG GY      +
Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPPR 238


>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus gasseri 202-4]
 gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 235

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ ++    Y+ D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I   +L +  +A  VE  G +I LT +E++++  L+      +T+E  
Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++      +V+ +DV + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 183 LQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 235


>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 230

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+++   +   L+   F+V +   G +G++  +  E+D +ILD+ L  + G+E
Sbjct: 3   KILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115
           +L+ +R  K   PV I+S      DK+ GL+ GADDYI+KPF+  ELVAR+ A       
Sbjct: 63  ILKKIRDEK-DIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121

Query: 116 VRRSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +R   G+   + I    L +  D++ V V G  ++L  KE+ ++  L+   N   ++E  
Sbjct: 122 LRNKYGNNNVNSITIRGLEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREEI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++      +   + V I ++R+K+ +      YIETVWG GY LR
Sbjct: 182 FDRVWGMDALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRLR 229


>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
           iners AB-1]
 gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
 gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 2503V10-D]
 gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners SPIN 1401G]
          Length = 234

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 4   KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +     + +++  ++  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++ N  DE
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVK-NPTDE 234


>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
 gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
          Length = 230

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  +L+ E F V V   G   +E+      D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLRQ-KSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S++  G + ++++   V V+G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + K +DV I +LR K+        +I TV G GY      
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGYKFEPEP 228


>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 228

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L  E ++V V + G + +        D ++LD+ + D+ G E
Sbjct: 4   RVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  + P+ +L+   ++ D+V+GL  GADDY+ KPF  EEL+AR+RA+ RR   
Sbjct: 64  VCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGAP 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DL ++   +       +I LT KEY+++ L        LT++  +  
Sbjct: 124 AQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLMEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  +++V++  LR KL  A G    I+TV G GYVL+E
Sbjct: 184 VWGYDYSGESNVLEVYVAYLRNKLE-AGGEPRLIQTVRGVGYVLKE 228


>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
 gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus jensenii 269-3]
 gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
           208-1]
 gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
          Length = 237

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F V     GE+ ++     + D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +++   +  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRDI 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    I  G+L +  DA  VE  G +I LT +E++++  L+      +T+E
Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L   +      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 HLLQTAWGYDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYVKDPNEE 237


>gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 233

 Score =  284 bits (729), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 171/228 (75%), Positives = 200/228 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A S+ELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSVELMLKSENFNVYTTDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRVAK+ TP+ ILSG++ IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL VNLD KTVE+ G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE   +E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASQGRNYIETVWGRGYVLREPNDEE 228


>gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
 gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45]
          Length = 238

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 157/230 (68%), Positives = 189/230 (82%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L + Y++D I+LDL L DI G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLARLYDYDLILLDLNLPDINGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I+TP+ ILSG    E+K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRINTPILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDE 228
           G DEPE+KIIDVFICKLRKKLS A G +NYIETVWGRGYVLR  E  +D+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGDENYIETVWGRGYVLRDPEPGRDQ 230


>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
          Length = 234

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 10/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M+IL++ED++++   IE+    E +       G++G  L +     +D I+LD  L  + 
Sbjct: 1   MKILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R +R    + PV +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRRR 120

Query: 119 S-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKE 172
                 +G +     +    ++ + + +  Q   I  LT KE+ ++           T+E
Sbjct: 121 YEEIQPKGASLHYKESTYFKISKETREIFYQDTAIDGLTPKEFDLLYYFIHHPKQVFTRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ ++      + + +DV I +LRKK+  A     +I TVWG GY   E   +E
Sbjct: 181 QLLDRIWGYEYYGDERTVDVHIKRLRKKIRTATH--PFIHTVWGVGYKFDETVVEE 234


>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 237

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +  ++   L+ EN+ V     G+  +E  + + FD +ILDL L  + G  
Sbjct: 7   KILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGER 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+    +ED++ GL+ GADDY+ KPF+  ELVAR+RA+ RR+  
Sbjct: 67  VCRAIRDTS-NVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++  G L++++    + +    + LT  E++++  L+       T+   +  +
Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDET 229
                E   + ID  +  LR KL +      ++ TV G GY     NA  E 
Sbjct: 186 LGYDFEGYERTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGYRFEAGNASHEA 237


>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 228

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K LA +I+  L+ E F V +   G +G++L   Y +D IILD+ L  + G 
Sbjct: 1   MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60

Query: 61  EVLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ R LR   K   P+ +L+ + S+E++V GL  GADDY+ KPF+  ELVAR+RA++RR+
Sbjct: 61  EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   Q  +  GDL +NL  + V  +G  ++L+ KE+ ++EL         ++E  L+ L+
Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   EP   I+DV++  LRKKL      +  IETV   GY L++ 
Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEK-IETVHNIGYRLKKE 224


>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 239

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L +     DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V G+ + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235


>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 235

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E + V+VT  G+  ++  +  + D ++LDL L +I G +
Sbjct: 5   KILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEIGGLD 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R        P+ +L+      D++ GL+ GADDY++KPF+  ELVAR++AI+RR+
Sbjct: 65  ICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRRT 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   +  I  G++ ++L+   V +   +++ T KE++++ LL+      LT+   L
Sbjct: 125 GSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223
             ++      + + +DV I + R+KL+N       YIETV G GY  +E
Sbjct: 185 KEIWGYGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRFKE 233


>gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 231

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 158/224 (70%), Positives = 193/224 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A +IELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQTIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLNLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LRVAK++TP+ ILSG + I+ KV+    GADDY++KPF+K+E++ARI A+VRRS+
Sbjct: 61  DVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ +A GK++IETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAASAQGKHHIETVWGRGYVLRDP 224


>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
           17982]
          Length = 227

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E + V     G   +   + +  D ++LD+ L  + GF+
Sbjct: 4   RILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V RA+R      P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R R  
Sbjct: 64  VCRAIRRVS-DAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DLS+++    V+ +G  I LT  E+ ++  L+       ++E  L  ++ 
Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222


>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 236

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+  +       L+   F+V     G   + L +      I+LDL L  + 
Sbjct: 1   MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G +V RALR   ++   P+ +L+      D++ GL+ GADDYI+KPF+  ELVAR+RA++
Sbjct: 61  GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120

Query: 117 RRSRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR  GH Q    I  G L+++L+ + V      I LT  E++++ +L+       T+   
Sbjct: 121 RRIEGHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           L+ +Y+       + ID  I  LR+K+     G    I TV+G GY   E 
Sbjct: 181 LDRIYNTNYIGFDRTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKFAEP 231


>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
 gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
           6506]
          Length = 413

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 124/228 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ +AH++   L  +++ V V   G+ G E  + + +D I+LD+ L  + G 
Sbjct: 1   MKVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR    +TP+ +L+   S   K+ GL +GADDY+ KPF+  EL ARIRAI+RR  
Sbjct: 61  SLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ TG L +N +   V      ++LT KEY ++EL         ++   L+HL+ 
Sbjct: 121 AALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + P    +   I  LR KL  A    + +ETV+G GY L+   + E
Sbjct: 181 FEEPPAEDTVRAHIKGLRSKLKAAGAPPDLVETVYGLGYRLKPEKRQE 228


>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
 gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
           KT99]
          Length = 229

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   ++ +L+   F     +  +  + +      D I+LD       G +
Sbjct: 4   KILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 SPTSSEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +   + I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SEHDHLIQTVRGAGYRF 225


>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 228

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I+L L+S  +   +++ G+    +   Y+ D ++LD+ L    G +
Sbjct: 7   KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VL+ +R A  +TPV +L+      DKV  L+ GADDYI KPF  +ELVAR++A++RR  S
Sbjct: 67  VLKWIRKA-DNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++    L +++ + TV      I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 ENVSSQVLNFNGLKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV + +LR+KL    G    I+TVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLHEGNGWD--IQTVWGVGYKFE 226


>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
 gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
           Uo5]
          Length = 235

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
           [Lactobacillus sakei subsp. sakei 23K]
 gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
           phosphate regulation) [Lactobacillus sakei subsp. sakei
           23K]
          Length = 237

 Score =  284 bits (729), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 8/237 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D+ A+   +   L+ E+F V     G   + +    +FD IILDL L  + G
Sbjct: 1   MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V + +R AK+ TP+ IL+   +  DK+ GL+ GADDY++KPF+  E++ARIRAI RR+
Sbjct: 61  IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120

Query: 120 RG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A   IV GDLSV+      +   H++HLT KE++++     R N   ++E
Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             LN ++      E +++D+ +  LR+K+ +      Y++TV G GY L + A D+ 
Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHDQA 237


>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 252

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 20  KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +++R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 80  VAKSIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 139 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 199 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251


>gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 119/230 (51%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+ +   I   L  E + V  T  G   IE  +  +F  +ILD+ L  I G+
Sbjct: 5   IKILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIMLPKIGGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R    +TPV ILS      DK+ GL  GADDY++KPF   EL AR++A +RR  
Sbjct: 65  EVLQKIREKG-NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFL 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++   D+ ++++   V+V G+ + LT KE+++++L         TK   
Sbjct: 124 KFSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQM 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++      +   + V I +LR+K+        YI+T+WG GY L E 
Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKLVEE 233


>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
           subsp. longum BBMN68]
 gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 234

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 234


>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 235

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +A+R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKAIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I + L S  +       G +   +   ++ D ++LD+ L  + G E
Sbjct: 7   KVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLPGVDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R +    PV +L+      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKSS-EIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNY 125

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  +I   DL ++ ++  V  +G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+K+S   G    IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKIS--GGENWLIETVWGVGYKFE 226


>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
 gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
           27755]
          Length = 234

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+A+A  + L L  E F+  +   GE  +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  + +TP+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-RANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +    + +NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + + +DV I +LR+K+ +  G K  + TVWG GY   
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWK--LATVWGIGYKFE 232


>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 227

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV  L+ GADDYI KPF+ +EL+AR++A++RR   
Sbjct: 66  LCREVRKFS-KVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   DL V+L    V  +G  + LT KE +++  L    N   T++  L +++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 185 GYDYMGDSRTVDVHIKRLREKIGDGTNWK--LTTVWGVGYKFEVN 227


>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
 gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  + L L  E F+  +   GE  +     Y+ + I+LDL L  I G++
Sbjct: 5   KILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGIDGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +TP+ +LS    + DKV GL+ GADDYI KPF+ +ELVAR++A++RR + 
Sbjct: 65  VCREIRTRS-NTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            ++           +    + +NL   +V V GH + +  KE +++  L+   N   T+E
Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + + +DV I +LR+K+ +  G    + TVWG GY   
Sbjct: 184 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHNGWS--LSTVWGIGYKFE 231


>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
 gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
          Length = 231

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +DD  +A  + + L+ E + V     G++ I++ +    D +ILD+ +  +
Sbjct: 1   MKNITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV R +R    + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGFEVTRRIREKH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLR 119

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R       +    S +  G L+++ + +TV + G  I LT KE++++ LL+   N     
Sbjct: 120 RFMKLNQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRA 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 EDIFQKVWGDAYYEGGNTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGYKF 229


>gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
 gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str.
           Houston-1]
          Length = 233

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 166/227 (73%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDKA+  SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKAMTQSIELMLKSANFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLIVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNINYIDTVWGRGYVLRDPVEE 227


>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 256

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC----------KFYEFDAIILDL 52
           IL+IED+  +  ++ L L+ E ++  V   G + + L           +  E   IILD+
Sbjct: 24  ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  I G ++ R +R    + P+ ++S   S  D+V GL+ GADDY++KPF   E++AR 
Sbjct: 84  MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143

Query: 113 RAIVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR+R        ++   DL +        ++G  ++L+ KEY+++EL         
Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +E  L+ ++      + K +DV I  LR+K+        YI TV G GY  
Sbjct: 204 PREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255


>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
 gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
          Length = 223

 Score =  284 bits (728), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
          Length = 234

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 127/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDTPAE 234


>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   +   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRELRQRS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGD 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q++++ G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 SSGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGYKFEP 229


>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
 gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
          Length = 233

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 129/228 (56%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +E  LK E + V+V   G+D +EL    + D ++LD+ L    G E
Sbjct: 4   KIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QS        IV  D+ V  +A +++ +G  I LT +E+++   L+      +T+E  
Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +V+ +DV I +LR+K+ + A    YI T  G GY L+
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGYFLQ 230


>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
 gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
           F0415]
          Length = 235

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 124/231 (53%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E + V     G++ ++  +    D IILD  L ++ G E
Sbjct: 3   KVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR+  
Sbjct: 63  VAKEIR-KSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTEN 121

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      + S +  GDL +  DA   + +G  + LT +E++++  L+      +T+
Sbjct: 122 IETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 233

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + L+   F V   + G   +E+    ++  I+LDL L ++ G E
Sbjct: 5   KILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPELDGRE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K  TPV +L+      +++ G + GADDY+ KPF+  ELV R++A+++R   
Sbjct: 65  VCAQLRKQK-DTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVHQ 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                          L++NL+++ V   G  + LT KEY+++  L+ R     T+E  L 
Sbjct: 124 GPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            +++ +   + + +D  I +LR+KL  A+      I TVWG GY   
Sbjct: 184 DVWNYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGYKFE 230


>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
 gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
          Length = 250

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L++E + +Y     ED +   +    D  +LD+ +  I GFE
Sbjct: 25  KILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKINGFE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV +L+      DK++GL  GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 85  ICKMIRE-KYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + Q       I    L ++ D+  V +    + LT  E+ ++  L   +   +T E    
Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 204 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 250


>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
 gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
          Length = 226

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L +E F+      G   +E     + D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +R +  
Sbjct: 64  ICRLIRQES-SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  GDLS+++ A TV+  G  I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 EPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 235

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 124/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   + L L+ + ++V +   G+D +   K    D ++LD+ L    G++
Sbjct: 8   KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGWQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +++      DKV GL+ GADDYI KPF+ +E++ARI A+ RR   
Sbjct: 68  VCREIRKIS-NVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGT 126

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q  +    LSVN+D+  ++V G  I    KE +++  L+   N   T++  L+ 
Sbjct: 127 GISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDE 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      + + IDV I +LR+KL      K  ++TVWG GY    + ++
Sbjct: 187 VWGFEYYGDSRTIDVHIKRLREKLE-GISDKWSLKTVWGVGYKFEADEEE 235


>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
 gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           MM3]
          Length = 230

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G++      FD +ILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE     + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
          Length = 225

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +E  +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+++++   +V      I+LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 255

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 23/243 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E   V     G + + L    + D I+LDL L    G +
Sbjct: 4   KILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVKDGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  ++  P+ +L+   +  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVRT-RLHMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRRQQK 122

Query: 122 HAQ----------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIE 159
            ++                        +   +L ++ D   V   G  + LT +EY+++ 
Sbjct: 123 TSEAAASSLDNANAGDNGQGAADEKQGLKLFNLFIDTDMYVVYKDGEPLDLTHREYELVY 182

Query: 160 LLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +T+E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY
Sbjct: 183 YMARNSGKVMTREHLLQAVWGFEYFGDVRTVDVTIRRLREKIEDDPSRPEYIMTRRGLGY 242

Query: 220 VLR 222
           ++R
Sbjct: 243 MMR 245


>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 230

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ + + I++ L  E F V   D G   ++  K   FD ++LD+ L    G  
Sbjct: 3   KLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      D++ GL+ GADDYI KPF+  ELVARI AI+RR   
Sbjct: 63  LCKEIRKIS-NIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVAA 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +++   +L++N D +TVEV+G  I LT KE+ ++  ++       ++E  L
Sbjct: 122 QPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++      +++ +D  I +LR KL N  G K  I TVWG GY   
Sbjct: 182 ENVWGYDFYGDLRTVDTHINRLRDKL-NMEGTKQAITTVWGVGYKFE 227


>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 217

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I+  L  E ++V     G   +E+ +   +D +ILD+ L  + G+ 
Sbjct: 3   KILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  PV +L+  S   D++ G +  AD+YI+KPFN   LVARI+AI RR+  
Sbjct: 63  VCREIRRESM-VPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRRAGK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+ ++  ++ VE++G  + LT KE++M+      +   L++E  LN ++  
Sbjct: 122 --PDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +V+ +D  + +LRKK+        YI+T+ G GY   E
Sbjct: 180 DYFGDVRTVDTHVKRLRKKIGEI-----YIQTIRGFGYRFEE 216


>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +E  +    D ++LDL L    G +
Sbjct: 4   RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GD+++++   +V+     I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 238

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 158/227 (69%), Positives = 187/227 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A++ TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRIARVETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+   D
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPQGD 227


>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
          Length = 244

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 14  KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +     + +++  ++  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 74  VAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++ N  DE
Sbjct: 193 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVK-NPTDE 244


>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 236

 Score =  284 bits (728), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G++ +   +  + D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 227

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DDK +   + L L+ E F V     G+  ++  +      +ILD+ L  I G  
Sbjct: 6   KIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLPGIDGIA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV  L+ GADDYI KPF+ +EL+AR++A++RR   
Sbjct: 66  LCREVRKFS-KVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   DL V+L    V  +G  + LT KE +++  L    N   T++  L +++
Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGKNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+K+ +    K  + TVWG GY    N
Sbjct: 185 GYDYMGDSRTVDVHIKRLREKIGDGINWK--LTTVWGVGYKFEVN 227


>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 231

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 134/226 (59%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA +++ +LK   + V V   GE G +L     +D  ILD+ L  + G 
Sbjct: 1   MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++LRA+R A + TPV +L+   ++ED+V GL +GADDY+ KPF+ +EL+AR+RA+ RR+ 
Sbjct: 61  DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      I  G   ++L+ +TV   G  + LT KE+Q++EL     N  L+KE+ L+ ++
Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +     ++ ++  LRKK+ +     +YI TV G GY+   + 
Sbjct: 181 GPDADVIGNAVENYVHFLRKKI-DEPDLPSYITTVRGVGYMFHPDP 225


>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
           43243]
          Length = 238

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++++A   +  L+   F V V   GE G+ L     F+ IILDL L  + GFE
Sbjct: 12  KVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ I+S      DK+RGL  GADDY++KPF+  ELVAR++A + R + 
Sbjct: 72  ICRQVREQK-NTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQS 130

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    + ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 131 LTSGARSNNDIIEIRGIKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELF 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 191 KEIWDMESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRFK 237


>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 225

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   RLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      D++ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +++  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
 gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 11V1-d]
 gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 09V1-c]
 gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2053A-b]
 gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2052A-d]
 gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 2062A-h1]
 gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LEAF 3008A-a]
 gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 143-D]
 gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners UPII 60-B]
          Length = 234

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 4   KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +     + +++  ++  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++    +
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 234


>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
 gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST26]
          Length = 230

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   ++  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 232

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +   L+ E F V     G D +     ++ D ++LD+ +  + G+E
Sbjct: 5   KILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+  L+  +   DK+ GL  G+DDY++KPF+  EL+ RIRAI+RR   
Sbjct: 65  VCRKIREQS-NVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L +N   +TVE +G  I LT KE+ ++ LL+   N   T++  +  
Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     +  I+   + +LR+K+        YI+T+ G GY  
Sbjct: 184 IWDTEYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGYKF 227


>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
 gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
           [Bacillus cereus AH1134]
          Length = 342

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I   L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 118 KILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 177

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 178 ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S GH +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   ++     
Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++         + V I K+R K+   +    YI+TVWG GY +
Sbjct: 297 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342


>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
 gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH621]
          Length = 230

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
 gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
           amycolatum SK46]
          Length = 230

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+A+  ++   L    + V + + G + +E       D  ILD+ +  + G 
Sbjct: 1   MKILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR      PV +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+R+++RRS 
Sbjct: 61  DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               ++     +   DLS++ + + V     RI LT  E+ ++ELL       L++   L
Sbjct: 121 LEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRTAIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V+I  LR+K + A G    I TV G GYV+RE A 
Sbjct: 181 EDVWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVMRETAP 230


>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
 gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
          Length = 234

 Score =  284 bits (728), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKI 229


>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
 gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 225

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE+G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  + L L +E F V+      D     +    D  ILD+ L D+ GFE
Sbjct: 4   KILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK+ GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 64  LCQKIRE-KYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I    L +N       + G  + LT  E+ ++ +L  +K   ++ E   +
Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++           I V I  LRKK+ ++     YI+TVWG GY + +
Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGYKIEK 230


>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
 gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
           Broad-1]
          Length = 225

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ + + ++  ML+ E F V V + G D ++       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R    S PV +++      DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQIRATS-SVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G + ++++   V V G+   L  KE++++E+        LT+   ++ ++
Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV + +LR KL        ++ TV G GY L
Sbjct: 182 GSDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKL 223


>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 236

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 236

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+K +   I   LK   ++V   D GE  +  C+  + D  +LD+ L  I G EV
Sbjct: 6   IYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGIDGLEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++ +      P+ +L+  +   DKV GL+ GA+DYI+KPF+  EL+ARI+ I RR  
Sbjct: 66  CRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFRRQA 125

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++    I  G +++++    V  +   I +T KE+++++LL L K   L++E+ L  
Sbjct: 126 DSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E + +DV I  LR+K+ +      YIETV G GY   +
Sbjct: 186 IWGFDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGYRFSD 231


>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
 gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-28]
          Length = 230

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
 gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 131/230 (56%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ E   V     GE+ IEL +  E+D ++LD+ L    G+E
Sbjct: 3   KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + ++         I  GDL ++ +++ V + G  I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L +++  R  D  +V+ +DV + +LR+K+  +     ++ T WG GY  
Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGYYF 231


>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 250

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RIL++ED+  +   I + L+ + + V     G   + L +          FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   +   +  +    D+S+  +   V V+G  I+L+ KEY+++EL         ++
Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
           gallolyticus UCN34]
 gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 236

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  +++      D ++LD       G +
Sbjct: 16  RILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGSGIQ 75

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   PV +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RR+
Sbjct: 76  LAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRRA 135

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 136 APTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +     I+TV G GY  
Sbjct: 196 WGTNVYVEDRTVDVHIRRLRKAVEP-SNHDRLIQTVRGAGYRF 237


>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 234

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V V   G + ++L +  E D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K  TPV +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VLRQIRT-KSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +           I  G L+++ DA  V   G  I LT +E++++  LS      +T++ 
Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +V+ +DV + ++R+K+         + T  G GY L+ + +
Sbjct: 182 LLQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLKASEE 234


>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
 gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
           20098]
          Length = 233

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E + V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGIDGTT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         +  GD+ + +    V V+G  +    KE++++E L   K   LT+   
Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++ ++      + K +DV + ++R K+        Y+ TV G GY + E A
Sbjct: 182 IDRIWGADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDEPA 232


>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 226

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  284 bits (727), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 236

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + I   +    D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       + S I  GDL +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++
Sbjct: 182 REYLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
 gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
           [Frankia alni ACN14a]
          Length = 246

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E + V V   G D +       +DAI+LDL L  I GF
Sbjct: 1   MRVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      PV +L+    ++D++RGL +GADDY+ KPF+  EL AR+RA+VRR  
Sbjct: 61  EVCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H   ++  G + ++     V   G  + L+ KE+ ++ LL    +  LT+     H++D
Sbjct: 121 VHRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+D ++  LR+K+ +     + IETV G GY L
Sbjct: 181 DAFDATSNIVDQYVRYLRRKI-DLPPAPSLIETVRGVGYRL 220


>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
 gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
          Length = 234

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A+ ++  LK E ++V V + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVRAKK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +        S +V  D+ +  +A  ++  G  I LT +E+ +   L+  +   LT+E 
Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ + +    YI T  G GY + E 
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGYFIGEE 234


>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
 gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 226

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L +E F+      G   +E     + D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +R +  
Sbjct: 64  ICRLIRQES-SVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDLS+++ A TV+  G  I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 EPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 256

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  + + +   L++E + VY    G   +        D +ILD+ L  + GFEV
Sbjct: 23  ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGFEV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +        +  L+  S   DK+ GL  GADDY++KPF+  EL AR++ I+RRSR  
Sbjct: 83  CRRI-QQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSRTP 141

Query: 123 AQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +     +++    TV   G  I LT +E+ ++ +L+        ++
Sbjct: 142 GPRVHTHQPIERPALRFEQFTIDPGCYTVWRDGEAIILTPREFDLLYVLAEYAGRVCNRD 201

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++        +++DV I +LR+K+         I+T+ G GY L 
Sbjct: 202 QLLERIWGSNFAGIDRVVDVHIKQLRRKIEVDPSNPQIIQTLRGVGYRLV 251


>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
 gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 200]
          Length = 241

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G E
Sbjct: 15  HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  ELVAR++A +RRS  
Sbjct: 75  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTK 133

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239


>gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
 gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str.
           Toulouse]
          Length = 233

 Score =  284 bits (727), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 164/227 (72%), Positives = 194/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDKA   SIELMLKS NFNVY+TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKATTQSIELMLKSANFNVYITDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLT KEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEEVSSSANYIDTVWGRGYVLRDPVEE 227


>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
           132]
 gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
 gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
 gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
           Full=Staphylococcal respiratory response protein A
 gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
 gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus subsp. aureus MW2]
 gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
 gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus COL]
 gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
 gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 930918-3]
 gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus D30]
 gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus H19]
 gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           aureus 04-02981]
 gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
 gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
           A8819]
 gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
 gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
 gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 241

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  EL     +  I+LDL L ++ G +V
Sbjct: 5   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 124 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 240


>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
 gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
 gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus hominis subsp. hominis C80]
          Length = 236

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ ++  K  + + I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQI 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        IV  ++ +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 ANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 236

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA ++   L+ E + V     G  G++L +  + D +ILD+ L  + GF V
Sbjct: 4   ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D++ GL+ GADDY+ KPF+  EL+AR+RAI+RR+   
Sbjct: 64  CRILRRE-TNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDRQ 122

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + L+   +L V+  ++ V    + I L  KE+ ++  L   +   L++++ L  +
Sbjct: 123 PTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV +  LR+K+        YI+TV G GY   + 
Sbjct: 183 WGYDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGYRFNDQ 228


>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 226

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L +E F+      G   +E  +  + D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    + P+ +L+  +   D V GL+SGADDY++KPF  +ELVARIRA +RR+  
Sbjct: 64  ICRAIRQDS-AVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++   TV+     I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 EPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 229

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDDK +A      L++  F V +   G  G +       D I+LD+ L    GF+
Sbjct: 3   KVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ ++S      DK+RGL  GADDYI KPF+  ELVAR+++ + R   
Sbjct: 63  VCREIRAEK-DIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQ 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G+L ++L +  V +Q   I L  KE++++  L+       +K+   
Sbjct: 122 LTNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I ++R+K+   +    YIETVWG GY  R
Sbjct: 182 ERVWGEDSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRFR 228


>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 225

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +   L  E + V V   G  G+EL     +D I+LDL L  I G E
Sbjct: 3   RILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    + P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIRA +RR + 
Sbjct: 63  VARRLRADS-NVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++   +L+++  ++ + V   R+ LT KEY ++EL     N  LT+++  + +++
Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  I++V++  LR+KL    G    I TV   GY+LRE+
Sbjct: 182 YDFGGESNILEVYVRYLRQKLEAN-GEPRLIHTVRSVGYILRED 224


>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L++E   V     G D +   +    D ++LD+ L  + G E
Sbjct: 4   RVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDY+ KPF  +EL+AR+RA +RR   
Sbjct: 64  VCRRIRAESG-VPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  + LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGYK 221


>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 243

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           RIL+++D++A+   ++  L+   +        E+  +  +  E  D IILD  L D+ G 
Sbjct: 3   RILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMSGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR   I+ P+  L+ +    ++V  L+ GADDYI+KPF   EL ARIRA++RR +
Sbjct: 63  DICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRYQ 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G + ++L   TV V G  + LT KE+Q++  L+   +  +T++  
Sbjct: 123 LSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDTL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+H++  +   + +++DV I  LR K+         I+TV G GY L
Sbjct: 183 LDHIWGFKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229


>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
          Length = 233

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 127/232 (54%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++V V   G + ++L +  + D ++LD  L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K  TPV +++   S  DKV GL+ GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 63  VLRQIRT-KSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  G L+++ DA  V   G  I LT +E++++  L+      +T++  
Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++      +V+ +DV + ++R+K+         + T  G GY L+ + +
Sbjct: 182 LQTVWGYDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYLKASEE 233


>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
 gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
          Length = 244

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +++ L+ E+F ++    G++  +L     +  I+LDL L ++ G +V
Sbjct: 8   ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMDGIQV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 68  ATKLREHK-QTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 126

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V      ++LT KEY+++  L+   N    +E  
Sbjct: 127 TVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 187 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 243


>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
 gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Carnobacterium sp. AT7]
          Length = 242

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/240 (28%), Positives = 129/240 (53%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   +   L+ E ++V     G +G E+   + +D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  KI  P+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR   
Sbjct: 63  ICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122

Query: 122 HAQ---------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
            +                 L+  GD+ ++     V V+  ++ +T KE++++  +  R N
Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L++E  L+ +++     E +I+DV I  LR+K+        YI TV G GY   +  K
Sbjct: 183 RILSREQLLDAIWNFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFEDPKK 242


>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 250

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RIL++ED+  +   I + L+ + + V     G   + L +          FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRRSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   +   +  +    D+S+  +   V V+G  I+L+ KEY+++EL         ++
Sbjct: 140 LIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  ++ ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIDQVWGADFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249


>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 235

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   + L L+   F V   + G + +E  +    D ++LD+ L  I G+
Sbjct: 1   MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V R LR      PV +L+    + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ 
Sbjct: 61  AVCRILRRES-DVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     ++ G L +++ A+     G R++LT KE+ ++ LL+      L +   +  
Sbjct: 120 KVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    + +V+ +D  +  LR KL  A   ++ IETV   GY L  +
Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLNPH 226


>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 233

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V   + G +G+ + +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  G++ +N+    V V+   + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K         YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 234

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I   L+ ENF+  +   G   +E+    + D IILDL L  + G 
Sbjct: 1   MNILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLDGL 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D++ GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLT 170
           S    G  Q +  T   +V+LD               + LT  E+ ++           +
Sbjct: 121 SLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDLTTLEFNLLSTFMSYPGRVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++ L+      + +++D  I +LRKK+       ++I+TV G GY   ++
Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFEDD 234


>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 246

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 14  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 134 AAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246


>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L+ E + +     GE+ +EL    E+D I+LD+ +  + G E+
Sbjct: 7   LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDGVEM 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + LR  K +TPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR+   
Sbjct: 67  CQELRKKK-ATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASAT 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++V G L+++ DA  V V    I LT KEY+++  L+   +   ++E  
Sbjct: 126 KFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
           L  +++     +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGYKFE 234


>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 246

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD A+  S+E  L+ E + V     G   +E+    + D ++LD+ +  + G 
Sbjct: 1   MRVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      PV +L+    + D+V GL  GADDY+ KPF  EEL AR+RA++RRS 
Sbjct: 61  ETCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRST 120

Query: 121 ------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                                 + +    ++++  ++ V  +G  + LT  E++++EL  
Sbjct: 121 LVTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFL 180

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 L++ M +  ++     P    ++VF+  LR+KL  A G    + TV G GYVLR
Sbjct: 181 THPRQVLSRSMIMEKVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGVGYVLR 239

Query: 223 ENAKD 227
           E A D
Sbjct: 240 EPAAD 244


>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
 gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 236

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +       G + +     ++ D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                      +A S I  G+L +  DA   + +G  I LT +E++++  L+      +T
Sbjct: 122 IETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMK 233


>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 240

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +++ L+ EN+ +   D G+D +E     ++D I+LDL L    G E
Sbjct: 8   KILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCKGIREKK-ATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A        + ++V   L+++ DA  V V G  ++LT KEY+++  L+   +    +E 
Sbjct: 127 TAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDREQ 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  I +LR+KL+  +      I TVWG GY   
Sbjct: 187 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFE 236


>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
 gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
 gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
 gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
 gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
 gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
 gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 252

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +  ++DA++LDL L  I G E
Sbjct: 16  RVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 76  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +    +S++  A+TV+V   R+ LT +E+ ++   +   +   ++   L
Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           NH++  + E     ++  I +LR K+         I TVWGRGY  
Sbjct: 196 NHVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGYKF 241


>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
 gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
 gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
 gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
 gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
 gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
 gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
 gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
 gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
 gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
 gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
 gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
 gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
 gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
 gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
 gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
 gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
 gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
 gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
 gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 239

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD ++   ++  L+ + ++V V   G +G++  + ++   +ILDL L D+ G++
Sbjct: 3   RILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   +    V +L+   +  DK++G Q GADDY++KPF+  EL AR++AI+RR R 
Sbjct: 63  LCQQM-QKETGVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGRT 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     ++    L ++   + V      I+LT  E+ ++  ++        +   +  
Sbjct: 122 RTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++D   E + +++DV I ++RKKL         I TV G GY        E
Sbjct: 182 VWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPTPKE 232


>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
 gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
          Length = 235

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E  +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR   
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S       +  GDL +  DA   +  G  + LT +E++++  L+      +T+
Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E  L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234


>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
          Length = 248

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 17  MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 77  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 135

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 136 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 195

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 196 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 246


>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
 gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 240

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
 gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 01V1-a]
          Length = 244

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 14  KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +     + +++  ++  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 74  VAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++    +
Sbjct: 193 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 244


>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 233

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V   + G +G+ + +  E   ++LD+ +  I G  +
Sbjct: 6   ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R AK   P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKIREAK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  G++ +N+    V V+   + LT +E+ ++ELL+       + E    
Sbjct: 125 NGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K         YI+TVWG GY + ++
Sbjct: 185 KVWNERSFQSDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232


>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 127/225 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   IE  L  +N+ V V   GE   +    +++D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+   +I+D+V+GL +GADDY+ KPF+ EEL ARIRA++RR  
Sbjct: 61  ALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL V+ +   V  Q   ++L+ KEY+++E          ++   L+HL+ 
Sbjct: 121 TALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               PE   +   I  LR+KL  A    + IETV+G GY L+E+ 
Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKESP 225


>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 227

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +A  ++  L+ E F V VT  G++ +   +    D IILDL L +I G++
Sbjct: 4   KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEISGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR +  +RRS  
Sbjct: 64  VCREIRKES-RVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEH 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ ++V   L ++ + + V++ G  I LT  E+ ++  L+       ++   L+ L 
Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKMKDKG 227


>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
 gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
          Length = 238

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +A  + L L+ E + +     G   +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++  + E     ++  I +LR K+       + I TVWG+GY      ++
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPVTQE 235


>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
 gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH676]
          Length = 230

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
 gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
           DG893]
          Length = 236

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   + + +     N  + D G+ G+E  +  + D ++LDL L  + G  V
Sbjct: 5   VLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLMLPGMDGLSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV +L+  S+  D+V GL+ GADDY++KPF+  EL AR++A+ RR    
Sbjct: 65  CREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRRVDAM 124

Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           + S            + T  L ++   + V V    + LT +E+ ++   +       ++
Sbjct: 125 SSSSGETSGPEELGELDTEGLRIDPTRRRVFVWEQEVELTAREFDLLWHFASHPGRVFSR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              L+ ++    E     ++  I +LR K+        +IETVWG GY  R+
Sbjct: 185 VQLLDKVWGYNHEGYEHTVNTHINRLRGKIEQDPARPEFIETVWGVGYRFRD 236


>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
 gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 89/223 (39%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  +E+ L+ E + V     G  G+E     ++D ++LD+ L  + G E
Sbjct: 4   KILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV +L+   S+ DKV GL SGADDYI+KPF  EEL+ARIRA +R+   
Sbjct: 64  VLRRLRRES-DLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H  S++  G+L+++++   V V+G  + LT KE+ ++  L   K   LT+E  L+ ++  
Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E   +DV+I  LR K+  A G K  I TV G GYV+RE+
Sbjct: 183 DFVGETNSVDVYIRFLRSKIDEAFGIK-LIHTVRGVGYVIRES 224


>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 229

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 241

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 128/236 (54%), Gaps = 6/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + V     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L V+  A+ V+V+G  + LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           N ++  + +     ++  I +LR K+         I TVWGRGY L  +A +E+ E
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKLAISAMEESGE 241


>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 255

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/250 (30%), Positives = 134/250 (53%), Gaps = 29/250 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L+ E + V   + G+ G+EL   ++ D IILDL L  + G +
Sbjct: 3   KVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      +K+ GL+ GADDY++KPF+  E++AR++AI+RR+  
Sbjct: 63  VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122

Query: 122 HAQS-----------------------------LIVTGDLSVNLDAKTVEVQGHRIHLTG 152
              S                             +I  GD+ ++++   V V+G  I +T 
Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           KE++++  ++ R N TL++E  L  L+      E +I+DV +  LR+K+        YI 
Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLWRFDYAGETRIVDVHVSHLREKIELDTKNPEYII 242

Query: 213 TVWGRGYVLR 222
           TV G GY   
Sbjct: 243 TVRGFGYKFE 252


>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
 gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKFV 231


>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD  +A  IEL L+ E + V   D G DGI + K   FD ++LD+ L  + G E
Sbjct: 4   KILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S +EDKV+GL  GADDY++KPF  EEL+ARIRA +RR  G
Sbjct: 64  VCSQIREFS-DIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++++ T D+ V LDA  V+  G  I LT KEY ++  L   +   ++++  LN+++
Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E  I+DV+I  LR K+ +    +  I TV G GYVLR +
Sbjct: 183 GYDYTGETNIVDVYIRYLRSKI-DDPFSQKIIHTVRGVGYVLRSD 226


>gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 231

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 165/230 (71%), Positives = 195/230 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELML SE FNV+ TDLGE+G++L K Y++D I+LDLGL DI G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLLSEGFNVFQTDLGEEGVDLGKIYDYDIILLDLGLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALRV+KI TP+ ILSG   ++DKVRGL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG L VNLD KTVEV G+R+HLT KEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL+ A  G++YIETVWGRGYVLR+  +++  
Sbjct: 181 GIDEPELKIIDVFICKLRKKLATANTGQHYIETVWGRGYVLRDPKEEQAA 230


>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
 gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 129/236 (54%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++++   ++  L+   ++V     GE+ +EL +    D I+LD+ L  + G +
Sbjct: 4   KILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR  K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR+  
Sbjct: 64  VCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADI 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I+ G+L +  +      +  ++ LT KE++++  L   K   LT++
Sbjct: 124 SSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + L+ +++     + +I+DV I  LR K+ +      YI+T+ G GY L E   +E
Sbjct: 184 LLLSAVWNYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 239


>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 245

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +  S+ L L  +   V     G  G+EL      D +++DL L DI GFE
Sbjct: 20  RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR +    P+ +++  +   D V GL++GADDY++KPF  +EL ARIRA++RRSR 
Sbjct: 80  CCRRLRRSS-DVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G A  +I   DL +  DA  V   G  +HLT  E++++  L+   +   ++E  L  +
Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + +I+DV + +LR K+         + TV G GY ++ 
Sbjct: 199 WGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243


>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 226

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 12/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   I+  L++  + V +   GE+G +       D IILDL L  I G  
Sbjct: 3   KILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL-NDSIDLIILDLMLPRIDGLS 61

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R        P+ +L+      DK+ GL+ GADDYI+KPF+  ELVARI+A++RR 
Sbjct: 62  FCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRRV 121

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + + +     LI   D  +++ +      G  ++LT KE+ ++  L +     LT+++ L
Sbjct: 122 QKNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDILL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      + + +DV I +LR+K+ +      YI TV G GY   +
Sbjct: 182 EKVWGYEYAGDTRTVDVHIRRLRRKIGDN-----YIVTVRGVGYKFVK 224


>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 255

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L    +NV + + G   +E+    +   +ILD+ +  + G 
Sbjct: 24  MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VRRS 
Sbjct: 84  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT+  
Sbjct: 144 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++          ++V+I  LR+K +   G    I TV G GYVLRE A 
Sbjct: 204 ILEEVWGCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETAP 255


>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
 gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
 gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
          Length = 226

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E +++     G  G+ + +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++       +    L+++  A+ V++    I LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           N ++  + E     ++  I +LR K+ +       I TVWG GY      ++
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGYKFAAPPQE 237


>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 123/226 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+ ++ +I   L  +++ V V   G++  EL   + +D I+LD+ L  + G 
Sbjct: 1   MKILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +++   ++ED+V GL  GADDY+ KPF  +EL AR+RA++RR  
Sbjct: 61  TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  +  V  Q   I L+ KEY ++E     ++    +   L HL+ 
Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               PE   +   I  LR+KL       + IETV+G GY L+E  +
Sbjct: 181 FERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRLKERPE 226


>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 243

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V     G+DG+   +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R  +  TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++        +  G L+++   +   V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L      E 
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKLVAPGPAEA 239


>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 225

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ L   + L L  E ++V     GE+G+E  K   FD +ILDL L  I G  +
Sbjct: 4   ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDGLTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA+ RR+   
Sbjct: 64  CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTSP 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  GD+++N+  K V+  G  I LT KE+ ++ LL+       +K+  ++ ++
Sbjct: 123 FVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   ++V I KLR+K+ +      +I T WG GY ++
Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225


>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 218

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q     G + +N  ++ +EV G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 248

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++   +     G  I LT +E+ ++   +       ++   L
Sbjct: 126 LAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++  + E     ++  I +LR K+         I TVWGRGY L    +
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGE 236


>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E F ++    G++ +++ +  + D +I+D+ + ++ G+E
Sbjct: 3   RILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+     + KV+G + GADDY+ KPF+  ELVAR++A+++R R 
Sbjct: 63  LCRELR-DYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS+N       +    I L  KE++++  L+     T T++  +  ++  
Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++ +        I T+ G GY L 
Sbjct: 182 DYEGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLE 221


>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
 gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
 gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
 gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
 gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
 gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 244

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V V   G + +        D ++LD+ +  + G  
Sbjct: 14  RILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 74  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  GDL +NL  + V      + LT  E+ ++E+        LT+E  
Sbjct: 134 AVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++    EP    +DV++  LR+K + A+G    + TV G GYVLR   +
Sbjct: 194 LKTVWGFDFEPSSNSLDVYVMYLRRK-TEASGEPRLVHTVRGVGYVLRGGGE 244


>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 232

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ + + V     G++ IE  K  E+D ++LD+ L    GFE
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR   
Sbjct: 63  VCQTIREFS-EMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNK 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++    S++  GDL ++ +++ V ++   I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 KSGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESL 181

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LEYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFFR 231


>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 235

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--------FDAIILDLG 53
           +ILL+ED++ +  +I   L+SE + V     G+  +++ + ++         D IILD+ 
Sbjct: 3   QILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIM 62

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L  I G ++ R +R    + PV +LS   +  D+V GL+ GADDY++KPF   EL+AR R
Sbjct: 63  LPGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCR 122

Query: 114 AIVRRSRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           A++RR R +        +   ++S++ D   V V+   ++L+ KE++++EL         
Sbjct: 123 ALLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVW 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +E  L  ++      + K +DV I  LR+K+       +Y+ T+ G GY  
Sbjct: 183 PREQILEKIWGPDYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGYRF 234


>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
 gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L    ++V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 5   RILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGVDGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 65  ICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQEA 124

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +  G L+++  A+   V    I LT +E+ ++   +       ++   L
Sbjct: 125 MGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++  + +     ++  I +LR K+ +      +I TVWG GY   +  
Sbjct: 185 DKVWGYQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGYKFGDGG 234


>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
 gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
           response regulator PhoP [Pediococcus acidilactici 7_4]
          Length = 234

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+   +   LK  N+ V   D G D ++  +    D +I+DL L  + G 
Sbjct: 3   MTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLDGV 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+  SS  DK+ GL+ GADDY++KPF+ +EL++RI+AI+RR+ 
Sbjct: 63  EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    ++++    TV+     + LT  E+++++ L    N  L+++  L
Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++      + +I+D+ I  LR KL +       I+T+ G GY
Sbjct: 183 EQVWGYEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGY 226


>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +DDK + + +++ L+ E + V     GE  ++L     +  +ILDL +  + G 
Sbjct: 4   IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR  K + P+ +L+      DK+ GL  GADDYI+KPF+  E+VAR++A++RR  
Sbjct: 64  EVCRKLR-DKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ +    L++NL+  TV      I LTGKE ++++  +       TK  
Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++D     +   + V I KLRKK+        +I+TVWG GY   
Sbjct: 183 LFRNVWDDNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKFV 231


>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
          Length = 228

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 224


>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
 gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
          Length = 240

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   D G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
 gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-3]
          Length = 230

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D+ A+   +   LK   + V   + GE+     +    D ++LD+ L  + G  
Sbjct: 3   HVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R+ R   I  PV  L+      D+V GL  G DDY++KPF   ELV+R++A++RR+  
Sbjct: 63  LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAA 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G A   I  GD+ +      VEV G  + LT +E+ ++ +++ +     T++  L
Sbjct: 123 SSRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           + ++      + +I+DV +  LR K+        YI TV G GY
Sbjct: 183 DRVWGYTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGY 226


>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
 gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 130/234 (55%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E ++V     G + +E+      D ++LD  L +I G E
Sbjct: 3   KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +  STPV I++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 63  VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     H+Q  I   DL +  DA TV   G  + LT +E+ ++  L+ R    LT+
Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  L  ++      +V+ +DV + +LR+K+ ++      + T  G GY ++ ++
Sbjct: 182 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 235


>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 225

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D++     ++L L+ E F V     GE G++  +   +D +ILD+ L  + GF 
Sbjct: 3   KLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 63  VCREIRTFS-NIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G+L +N+  + V  +G RI LT KE++++ LL+       TK+  L+ +
Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V + KLR+K+ +      YI T WG GY ++
Sbjct: 182 WGFDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYMK 225


>gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3]
          Length = 233

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 165/227 (72%), Positives = 194/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+ KI TPV ILSGM  I+DKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLEKIKTPVLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGDL++NLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIITTGDLTINLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  K+
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPIKE 227


>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 229

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L    F V     G + + +    + D I+LD+ +  + GF+ 
Sbjct: 6   ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLDGFQF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           ++  R    +TPV +L+   +  DKV GL+ GADDY++KPF   ELVAR+RA++RRS   
Sbjct: 66  MQTFRKRH-NTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSPD 124

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  +L+  GDL++N   + V V    + LT  E+ ++  L        ++E  L  L 
Sbjct: 125 ALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERLQ 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               E   + IDV I  LRKKL        Y+ETV+G GY 
Sbjct: 185 GNDYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGYR 225


>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 229

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 237

 Score =  283 bits (726), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   I + L+  +F V     G++ +   K +    ++LD+ L  + G E
Sbjct: 6   RILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPGMDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LRV      V +L+      DKV GL+ GADDY+ KPFN  ELVARIRA++RR   
Sbjct: 66  VCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQT 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R     +I  G   ++  A+ +      + LT +EY ++++     N  L+++  LN  
Sbjct: 126 DRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      + K +DV I +LR+K+ +      YIETVWG GY  RE  K
Sbjct: 186 WGEDFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYRWREEGK 233


>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 230

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 235

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 157/231 (67%), Positives = 191/231 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+  + E  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLRDPDEVEETQ 231


>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
 gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
 gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
 gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
 gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
           SSI-1]
 gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
 gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
 gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
 gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10270]
 gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS2096]
 gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
           MGAS10750]
 gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
 gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
          Length = 236

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 233


>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 233

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+     + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 229

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 230

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  LA  +E  L    + V V   G   +   +    D ++LD  L  I G E
Sbjct: 10  HILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR+     PV +++    + D+V GL +GADDY+ KPF+ +EL+ARIR  ++  +G
Sbjct: 70  VCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPKG 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S +V  DL+++   +       ++ LT KEY ++  L       LT++  L H++  
Sbjct: 130 SGDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR K+    G K  I+TV G GYVLRE
Sbjct: 190 DFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVLRE 230


>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
 gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus porcinus str. Jelinkova 176]
          Length = 236

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 125/235 (53%), Gaps = 12/235 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +LL++D++ +   ++  L  E +   + + G   ++L +   +D I+LD+ L  + 
Sbjct: 1   MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R   I TP+ ++S  S   DKV  L+ GADDY++KPF+  ELVAR++AI+RR
Sbjct: 61  GIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRR 120

Query: 119 SRGH----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +             A+      +L +  +   +      ++LT KE++++  L    N T
Sbjct: 121 TDKEDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMT 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LT+E  L  ++      E +++DV I KLR K+ +      +I+T+ G GY  +E
Sbjct: 181 LTRERLLERIWGYDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKFKE 235


>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
 gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F+V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    +TPV +L+    +ED+++GL  GADDYI KPF+  E+VARI+A++RR+ 
Sbjct: 61  EICREIRKIS-ATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTH 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S+     L+++     V +Q   I LT  E++++  L+       ++   + 
Sbjct: 120 IETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQ 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +       + ++ID  I KLR+KL         I TV+G GY    + ++
Sbjct: 180 IVQGHDFGGDERVIDAHIKKLRQKLERVPSDPKIILTVYGVGYKFNAHKEE 230


>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+K +++ ++  L+ E F+V     G   + L K   +D ++LDL L  + G 
Sbjct: 1   MRILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    +TPV +L+    +ED+++GL  GADDYI KPF+  E+VARI+A++RR+ 
Sbjct: 61  EICREIRKIS-ATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTH 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S+     L+++     V  Q   I LT  E++++  L+       ++   + 
Sbjct: 120 IETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQ 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +       + ++ID  I KLR+KL    G    I TV+G GY    + ++
Sbjct: 180 IVQGHDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVYGVGYKFNAHKEE 230


>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 10876]
 gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           172560W]
 gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           F65185]
 gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 230

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 229

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225


>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
 gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
          Length = 233

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
 gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 233

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 232

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  ++  +E+ L+SE + V   D G D +E  +  E D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +LR +R     T V +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R    
Sbjct: 64  LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL +N   + V   G RI LT +E+ ++  L   K   L +E  L
Sbjct: 124 PLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +  ++DV+I  +RKK+ +  G +  I TV G GYVL+EN 
Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DHGGTQELIHTVRGVGYVLKENP 232


>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 232

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +   L  E + V V   GE+   L +    D ++LD+ L    GF 
Sbjct: 5   KILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKKDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +L+   +  D V GL+ GADDY++KPF+  E++AR++A +RR++ 
Sbjct: 65  VCRDIRRVS-NVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQA 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     ++  DL V+     +   G  I LT +EY ++  L       +++E  L+ +
Sbjct: 124 AKGPGGEFLICDDLQVDTGRMEIRKNGVDIDLTYREYLLLVYLMRNAGYVISREKLLSEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I +LR+K+        YI T  G GY +R
Sbjct: 184 WGYDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGYFIR 227


>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
          Length = 244

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 130/234 (55%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L+ E ++V     G + +E+      D ++LD  L +I G E
Sbjct: 10  KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIEGTE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R +  STPV I++   S  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 70  VLRQIR-SNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     H+Q  I   DL +  DA TV   G  + LT +E+ ++  L+ R    LT+
Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  L  ++      +V+ +DV + +LR+K+ ++      + T  G GY ++ ++
Sbjct: 189 EALLTEVWGFDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGYFIKPDS 242


>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 236

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + +     G + + + +  + D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYMK 233


>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 238

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + +     G  G+ + +   +DA+ILDL L  I G +
Sbjct: 6   RILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ ++S  SS   +V GL+ GADDY++KPF+  EL AR++A+ RR   
Sbjct: 66  ICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++       +    L+++  A+ V +    I LT +E+ ++   +   +   ++   L
Sbjct: 126 MSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++  + +     ++  I +LR K+        YI TVWG GY    + 
Sbjct: 186 DQVWGYQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGYKFTASG 235


>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 238

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 125/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+ E + +   + GE  ++     ++  I+LD+ L  + G E
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K STPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQTK-STPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV  +L +  DA  V   G  I LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLE 235


>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
 gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
           20213]
          Length = 234

 Score =  283 bits (725), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            AQ+         +V GD+++ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +    +
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDAPVE 234


>gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5]
 gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5]
          Length = 227

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G +      +D IILD+ L  + G 
Sbjct: 1   MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A++RR +
Sbjct: 61  TICRKIRETS-TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYK 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +I T   ++N   + V + G  +  LT KE+ ++  L   +    ++E  
Sbjct: 120 ATGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LRKKL  A+  K ++ TVWG GY   E+
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227


>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I L ++ E F V     G   IE  K +  + ++LD+ L    G++
Sbjct: 6   KVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPGADGWQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS      DKV GL+ GADDYI KPF  +ELVAR++A++RR   
Sbjct: 66  VCREIRQVS-NIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEH 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +V  +L +N    T++V G  + +  KE +++  L+   N   T++  L  ++
Sbjct: 125 KEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+K+ +       ++TVWG GY   
Sbjct: 185 GFDFYGDSRTVDVHIKRLREKIESEDQNWQ-VKTVWGVGYKFE 226


>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
 gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii
           as4aup]
          Length = 233

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 165/227 (72%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A+  SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM++IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSSVNYIDTVWGRGYVLRDPVEE 227


>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
 gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
           urealyticum DSM 7109]
          Length = 231

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD A+  S+   L    +++ +   GE+ +   +    D +ILD+ +  + G 
Sbjct: 1   MKILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR     TP+ +L+   S+ ++V GL +GADDY++KPF  EEL+AR R++VRR+ 
Sbjct: 61  EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A        ++   DL ++   + V   G +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LR+K     G    I+TV G GYVLRE A 
Sbjct: 181 LEDVWGYDFPTSGNALEVYIGYLRRKTEAD-GEPRLIQTVRGVGYVLRETAP 231


>gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
 gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis
           HTCC2594]
          Length = 231

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 159/233 (68%), Positives = 194/233 (83%), Gaps = 2/233 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+   DE  E  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRD--PDEQSEAA 231


>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           95/8201]
 gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 230

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 231

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +A  ++   + + F  Y+   G   ++  +  + D ++LDL L  I G+EV
Sbjct: 6   VLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLMLPGIDGWEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R  R      P+ +L+      D++ GL+ GADDY++KPF+  E+VAR+RAI+RRS   
Sbjct: 66  CRRARKIG-DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKI 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G+L ++ +   +      + +T  E+++++LL+  K    ++   +  +  
Sbjct: 125 AAQPEPIKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + IDV I  +R+K+ N      YI TV+G GY  
Sbjct: 185 YASEGYERTIDVHIKNIRRKIENNPKEPKYIITVYGVGYKF 225


>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 234

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  I G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGIDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+ARIRA++RR++G
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGYKI 229


>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
 gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
           L2-32]
          Length = 234

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+ARIRA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+    G   Y+ TV G GY +   ++
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKIDTPSE 234


>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 242

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 HAQSLIV------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S               TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+ +      Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G++      FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 245

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D ++    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A         +  +   DL ++L  + V   G ++ LT  E+ ++E+        LT+E
Sbjct: 132 AAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245


>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DDK++ + I++ L++E +N+     G + + L     FD IILD+ +  + 
Sbjct: 1   MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G      +R    + P+  LS       K+ GL  GADDYI+KPF   EL+AR++A +RR
Sbjct: 61  GISACLKIRED-YTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         S I   +L++N D   V V+G +I LT KE+ ++E L+  +    + + 
Sbjct: 120 YKKFNVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQK 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++ +       I V I  LR+K+        YI+TVWG GY +
Sbjct: 180 LYETIWNEQFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGYKI 227


>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
 gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR   
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q   I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
 gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V V + G+ G++   F +FD +ILDL L  + GFE
Sbjct: 3   KILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRKVRAEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G   + T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228


>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 235

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 4   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+ARIRA++RR++ 
Sbjct: 64  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+    G   Y+ TV G GY +   ++
Sbjct: 183 LIDRIWGSDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKIDTPSE 235


>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
 gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus iners LactinV 03V1-b]
          Length = 234

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 125/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E + V     GE+ ++    +  D +ILDL L    G E
Sbjct: 4   KILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +     + +++  ++  DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    + I  G+L +  +A  VE  G  I LT +E++++  L+      +T+E  L
Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKTGTNIELTHREFELLRYLAQHMGQVMTREHLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      +V+ +DV + +LR+K+ +     + + T  G GY ++    +
Sbjct: 183 QTVWGYDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGYYVKSPTDE 234


>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 232

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   + L L+ E ++V ++  GE+ +      + D ++LD+ L  + G++
Sbjct: 5   KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++  S   DKV GL+ GADDYI KPF+ +E++ARI+A+VRR+  
Sbjct: 65  VCREIR-KKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQ 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    +    LSVN+    ++V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SPAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      + + IDV I +LR+KL      K  ++TVWG GY    + +D
Sbjct: 184 VWGFEYYGDSRTIDVHIKRLREKLEGV-SDKWELKTVWGVGYKFETDEED 232


>gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
 gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae
           DFL 12]
          Length = 237

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 155/230 (67%), Positives = 187/230 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A SIELML   N NVY T +GE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRILIIEDDPTTAKSIELMLTHANLNVYCTAMGEEGIDLAKLYDYDLILLDLGLPDMTGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R+A+I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQIRLARIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG++ VNLDAKTVEV G ++HLTGKEYQ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKLS A GG+N+IETVWGRGYVLR+    E  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGENHIETVWGRGYVLRDPDPVEAP 230


>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces venezuelae ATCC 10712]
          Length = 226

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
          Length = 239

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + + + +  + D IILDL L ++ G E
Sbjct: 6   KILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 66  VAKEIRKTS-HVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 125 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 185 REHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 236


>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
           [Megamonas hypermegale ART12/1]
          Length = 230

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +   +E   K E +   +   G++ +++ +    D I+LD+ +  I GF
Sbjct: 1   MKVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI+AI+RR +
Sbjct: 61  EVCRVIRKTS-NVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQ 119

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++  +    +L +NL   TV +    + LT KE +++  L+ +K+   +++M LN L
Sbjct: 120 PKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I +LR KL     GK  I+T+WG GY   
Sbjct: 180 WGYDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGYKFE 223


>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
 gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1550]
          Length = 230

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
 gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 238

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +A  + L L+ E + +     G+  +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++  + E     ++  I +LR K+       + I TVWG+GY     +++
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPMSQE 235


>gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella
           schoenbuchensis R1]
          Length = 233

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 166/227 (73%), Positives = 197/227 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK  + SIELMLKS NFNVY+TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTSQSIELMLKSGNFNVYITDLGEEGVDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGMSSIEDKVRG   GADDY++KPF+KEEL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLD KTVE+ G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+ +++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPSEE 227


>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 260

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 39  RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 99  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 158 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 256


>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 234

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL +D++++       L+ E + V     G+D ++L   Y    I+LD+ +    G+ V
Sbjct: 4   ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDGWHV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +RV++  TP+ +L+ +    D++ GL  GADDY+ KPF+ +ELV R+  I+RR    
Sbjct: 64  AEQVRVSR-DTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYRT 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    SLI  G+L ++ D + VE     I LT KEY ++ LLS       +K   + 
Sbjct: 123 GGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLIE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++    + +   ++V I +LR+K+        +I TVWG GY   E  +DE+
Sbjct: 183 KVWGYEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRF-EGERDES 234


>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
 gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
 gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L  ++    +   F V     G  G+E+ +    D IILD+ L  + GF V
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+   + + P+ +L+ +     ++ GL+ GA DY+ KPF+  EL+AR+RAI+R +   
Sbjct: 64  CRAV-AKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q+     +  G + ++ +++ V  +   I L+ KE+ ++  L       L++++ L  +
Sbjct: 123 RQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +        + IDV +  LR+KL         I TV G GY  ++ A D
Sbjct: 183 WGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPATD 231


>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 226

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
 gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
           16841]
          Length = 233

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  + + GE+ +   + Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREVRA-KANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   DL +NL   +V   G  + +  KE +++  L+   N   T+E  
Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+H++      + + +DV + +LR+K+ + A     + TVWG GY   
Sbjct: 185 LDHIWGYEYIGDTRTVDVHVKRLREKIKDHANWS--LATVWGIGYKFE 230


>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU121]
          Length = 241

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F  +    G++  +L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY    N  DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240


>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 231

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +   LK E F   V D GE+ + L     +D  +LD+ L  + G+E
Sbjct: 7   RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +K + PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLR-SKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I    ++++ DA T   +   I LT +E++++  L       +++E  L  
Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +      E K +D  I +LR K+  A      +ETV G GY  R+
Sbjct: 186 AWGWEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRFRQ 231


>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
 gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
 gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
 gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
 gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
           LL3]
          Length = 240

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 130/234 (55%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I++    ++D ++LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQLREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  + G    I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEVGAE 240


>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 229

 Score =  283 bits (725), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 HAQSLIV------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S               TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+ +      Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD +++  ++  L+ E ++V     GE+   L +   +D ++LDL L    G +
Sbjct: 5   KILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGID 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R   +  PV I+S   S  DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 65  CLQWIRTKSV-VPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +AQ         I   +L V L + TV+ +G  I LT KE+Q+++L         TKE  
Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++     +  +I+V I +LR+K+ +      YI+T+WG GY + E
Sbjct: 184 YRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232


>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   I++ L  E + V     G++ IE  + +E D I+LD+ L  + G++
Sbjct: 4   KILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVNGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + L    +  P+ +L+  + I DKV GL+ GADDY++KPF+  EL+ARI+A +RR+  
Sbjct: 64  VCKTL-TPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  G LS+  D +TV + G  +HLT KE+ ++ LL+        ++  L 
Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +D+ + ++R+K+        +I+TV+G GY +R+
Sbjct: 183 KIWGYDYYGDTRTVDMHVQRIRRKIDTQPN--KFIQTVFGIGYKMRK 227


>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
          Length = 227

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ALA  I ++L++E +NV     G+  +E     + D ++LD+ L  + G E
Sbjct: 4   KVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+ +L+  S   D V GL++GADDY+ KPF  +EL+AR++A +R    
Sbjct: 64  ICSLIRQ-KSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDL V++    V   G  I LT  E+ ++  L        ++E  L  ++  
Sbjct: 123 TTEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGYR 221


>gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
 gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum
           CIP 105476]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 165/227 (72%), Positives = 198/227 (87%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A+  SIELMLKS NFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDRAVTQSIELMLKSANFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+AKI TPV ILSGM++IEDKVRG  SGADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLKTLRLAKIKTPVLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL+VNLDAKTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   +   NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLEAVSSNVNYIDTVWGRGYVLRDPIEE 227


>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
 gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
           str. Jelinkova 176]
          Length = 236

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 125/234 (53%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E +++     G + I + +  + D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G  + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++++
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKQH 235


>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 14  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RR   
Sbjct: 74  AARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   +  ++  GDLS+NL  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 134 AAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 194 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 246


>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 226

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
 gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
 gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
          Length = 224

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ ++   +  +D I+LD+ L  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+   +IEDK++GL  GADDY+ KPF+  EL+ARIRAI+RR  
Sbjct: 61  EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223


>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 248

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-----YEFDAIILDLGLTD 56
           ++L++ED++ +   I L L+ E + V     G   + + +      Y  D +ILDL L  
Sbjct: 20  QVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLPQ 79

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  EL+AR RA++
Sbjct: 80  VNGLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRALI 139

Query: 117 RRSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           RR   +      +    ++ +      V V+G  ++L+ KE++++EL         +++ 
Sbjct: 140 RRQHLNGITPTPVQQFREIKLYPQECRVTVRGEDVNLSPKEFRLLELFINNPRRVWSRDQ 199

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 LIDQVWGMDFVGDTKTVDVHIRWLREKLEEDPSKPEYLITVRGFGYRF 247


>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F+V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
 gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
          Length = 238

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + L+ EN+ +   + GE  +EL    E+D I+LDL +  + G E
Sbjct: 6   KVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K STPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKELRQKK-STPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSK 124

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ +IV   L+++ DA  V   G  ++LT KEY+++  LS   +    +E 
Sbjct: 125 TSYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDREH 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY    N
Sbjct: 185 LLKEVWHYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236


>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
 gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
 gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 656

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 130/231 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L S+++ V +   G++GI L +  ++D I+LD  L  + G 
Sbjct: 1   MRILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR A+  TP+ +L+   +  +KV  L +GADDY+ KP +  EL+ARIRA++RRS 
Sbjct: 61  DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++     V      +HLT KEY ++EL     +   ++   L++L+ 
Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             + P    +   I  LR+KL  A    + IETV+G GY LR+  ++ + +
Sbjct: 181 FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRLRQPPEEGSAQ 231



 Score =  113 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +  +L+   F + + +  +   E  +    D +ILD+ + +  G +
Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGID 583

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  LS     E   +   +GADDY+ KP    EL+AR+   + RS
Sbjct: 584 LCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIERS 643

Query: 120 R 120
           +
Sbjct: 644 Q 644



 Score = 73.4 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPG 59
           R+L+++DD  LA  +   L +    V V        +       D ++LDL   D    G
Sbjct: 399 RLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAGNG 458

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNK-EELVARIRAIVRR 118
            E+L  L+  +   PV +L+   S  ++VR  + G   ++ KP    + + A  +A+ + 
Sbjct: 459 LELLAELKTTQPPVPVVVLTVKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKALQQS 518

Query: 119 SRGHAQSLIVTGDLSVNLDAKTV 141
               A+ LIV  D  +    +TV
Sbjct: 519 GSPQAKLLIVDDDPQILDQLRTV 541


>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 227

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DD+ +   I L L+ E F       G   +   K      IILDL L  I G  
Sbjct: 6   KIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLPGIDGMT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      DKV GL+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 66  LCKEVRKF-TNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DLS++L    V+ +G  + LT KE ++   L    N   T++  L +++
Sbjct: 125 EENDSDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+K+ +    K  + TVWG GY   
Sbjct: 185 GYEYMGDSRTVDVHIKRLREKIGDGPNWK--LTTVWGVGYKFE 225


>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  LK E ++V + + GE  +EL      D I+LDL L    G E
Sbjct: 5   KILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVRAKK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       S +   D+ +  DA  ++  G  I LT +E+ +   L+      LT+E  
Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV + +LR+K+   +    YI T  G GY + E 
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGEE 233


>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 250

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-------FYEFDAIILDLGL 54
           RIL++ED+  +   + L L+ E + +     G   +EL +          FD ++LDL L
Sbjct: 20  RILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G ++ R LR    + P+ ILS   S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   S   +  +    D+S+      V V+G  I+L+ KE++++EL         ++
Sbjct: 140 LLRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249


>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  ++L L  E +   + + G DG+      E+D ++LD+ L ++ G E
Sbjct: 3   KILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+  S+IEDKV GL  GA+DYI+KPF  +EL+ARIR  +R S  
Sbjct: 63  VLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFSHK 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A      S+    DLS+N   + V     +I LT +E+ ++           ++E  LN
Sbjct: 123 SAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++      +  ++DV++  LR+KL         + TV G GYVL+E A +ET
Sbjct: 183 AVWGYDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVLKE-ASNET 234


>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L +  +     + G++ +   +   +D ++LD+ + ++ G  V
Sbjct: 6   VLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++ 
Sbjct: 66  CKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  I  G + +N  ++ VE  G  I LT KE+ ++  L        ++E  L  ++  
Sbjct: 125 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 185 DYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL     G NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGE---GGNYIQTVWGVGYKFE 222


>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
 gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+     + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 228

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L  + FN    + G++ + L +  + + I+LD+ L DI GFE
Sbjct: 4   KILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           + + +        + +++      DK+RGL+ GADDYI KPFN  EL+ARI+A++RR+ +
Sbjct: 64  ICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V G L ++ + + V   G  + LT +E+ ++++     N  LT++  LN ++ 
Sbjct: 124 PDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR+K+ +      YIETVWG+GY+ R+
Sbjct: 184 EDYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLFRK 226


>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
 gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L  +   V     GE+ + + K   +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQAIREFS-DVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSP 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S+I  GD+ ++ D++ + +  + I+LT +E++++E+L   +N   ++E  L 
Sbjct: 123 ERAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + +LR+K+        Y+ T WG GY
Sbjct: 183 IVWGEDYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGY 225


>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
 gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L  E + V     G+ G+ L +   +DA+ILDL L  + G +
Sbjct: 11  RILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLPGVDGLD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 71  ICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQEA 130

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++L++ G       L+++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 131 MGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQLL 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++  + +     ++  I +LR K+         I TVWG GY   +
Sbjct: 191 DKVWGYQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYRFAD 238


>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
 gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 128/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ E   V     GE+ IE+ +  E+D ++LD+ L    GFE
Sbjct: 3   KVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-EMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTR 121

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +          I  G+L ++ D++ V +    I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 RSRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREEL 181

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LGYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 231


>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 251

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 14  RVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 74  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    L ++   +   V G RI LT +E+ ++   + R     ++   L
Sbjct: 134 MAKDARMEAGSLNLAGLFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLL 193

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++  + E     ++  I +LR K+ +       I TVWGRGY    + 
Sbjct: 194 NAVWGYQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGYKFVADP 243


>gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
 gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149]
          Length = 228

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  ++  ++  L++EN+ V     GE+  E  +   +  ++LDL +  I G 
Sbjct: 1   MKLLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMIPKISGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV++ +R    + P+ I+S   +  DK  GL  GADDYI+KPF+  E++ARI+A +RRS 
Sbjct: 61  EVMQHIRT-HSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   Q +++ GDL++NL   TVE  G +I LT KE+++++LL        TKE   +
Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +   ++V I +LR K+        YI TVWG GY L +
Sbjct: 180 LIWNDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKLGD 226


>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I   L+ ENF  ++   G   +E     + D I+LD+ L ++ G 
Sbjct: 1   MNILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGL 60

Query: 61  EVLRALRVAKISTP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D++ GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
           S    G    +  T   SV+LD      Q        + LT  E+ ++           +
Sbjct: 121 SLRHGGQPNQVYRTNHFSVDLDQHLATRQLDNEESELLDLTTLEFNLLSTFMSYPGRVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++ L+      + +++D  I +LRKK+       ++I+TV G GY   ++
Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPSFIKTVIGVGYKFEDD 234


>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
 gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
           12042]
          Length = 229

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  + + LK+E F   V   G + ++L + ++FD  +LD+ L D  GF 
Sbjct: 4   KILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCSGFH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R +  + PV +L+      DK+ GL  GADDYI+KPFN  E+ AR++A +RR   
Sbjct: 64  LCEEIR-SHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+    ++I    L +N       + G +++LT  E+ ++++L   +   ++ +    
Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I ++R+K+        +I+TVWG GY + +
Sbjct: 183 SIWKEKYFESNNTVMVHIRRIREKMHEQPRNPKFIKTVWGMGYKIEK 229


>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
 gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
 gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           m1293]
 gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BGSC 6E1]
 gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST24]
 gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 228

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L+S  ++  +   G+        Y+ D ++LD+ L  + G +
Sbjct: 7   KILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+      DKV  L+ GADDYI KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKWIRRDS-EIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNT 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  + ++    L++++++  V  +   I +  KE++++  L+   N   T+E  L  ++
Sbjct: 126 ESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL      +  IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLQGDQDWQ--IETVWGVGYKFE 226


>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
 gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
          Length = 240

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L+EDD  +A  ++L LK E + +     G   +E  + + +DA+ILDL L  + G E
Sbjct: 6   KIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +Q+      +I    + ++  A+ V + G  + LT +E+ ++   +       +++  L
Sbjct: 126 MSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQALL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++  + E     ++  I +LR K+   A     I TVWGRGY L
Sbjct: 186 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231


>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
 gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
           [Geobacter uraniireducens Rf4]
 gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter uraniireducens Rf4]
          Length = 223

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   +  +   L+   F V V + GE+G++L    E+D IILD+ L  + G+
Sbjct: 1   MRILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K  TPV  L+   +++D+++GL+ GADDY+ KPF   EL+ARIR I+RR  
Sbjct: 61  QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI   DL ++L    V   G R+ LT KE+ ++ LL+ R    LT+      ++D
Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +  ++DV + +LR K+ +       I TV G GYVL E
Sbjct: 181 IDFESDTNVVDVHMRRLRAKV-DDPFEHKLIHTVRGVGYVLEE 222


>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
 gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas sp. SKA14]
          Length = 239

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L +     DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V+G  + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKLVDPA 235


>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
           [Burkholderia phytofirmans PsJN]
 gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 245

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++   +   V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++  + E     ++  I +LR K+         I TVWGRGY L    +
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKLAVPGE 236


>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 224

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L  E + V +   G   +++ +    D ++LDL L  I G EV
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A    P+ +L+   +I D+V GL++GADDY+ KPF  EEL+ARIR  +RR +  
Sbjct: 64  ARRLRAAS-DVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++  G L+++L A  V +   R+ LT KEY ++EL        LT+++  + ++  
Sbjct: 123 DAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  II+V++  LR+KL  A G    I TV G GY+LRE 
Sbjct: 183 NFGGESNIIEVYVRYLRQKLE-AHGEPRLIHTVRGVGYILREE 224


>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ +  GD+ +N+    V +    + LT +E+ ++ELL+  +   ++ E   
Sbjct: 125 NGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          + V I K+R+K+        Y++TVWG GY + ++
Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
 gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis IBL 4222]
          Length = 241

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE G++      FD +ILD+ +  + G E
Sbjct: 15  HILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 75  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239


>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L+ E F V     G    +L     +D ++LDL L  I G +
Sbjct: 12  RLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGINGLD 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR       + ++S   +  D+V GL+ GADDY+ KPF   ELVAR RA++RR R 
Sbjct: 72  LCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQRT 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL +      V   G  I L+ KEY+++EL         ++E  +  ++
Sbjct: 132 PLPTTSSLEHLDLQLYPGECRVTRAGIEIRLSPKEYKLLELFMQNPRRVWSREQLIEQVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV I  LR+K+ +       + TV G GY  
Sbjct: 192 GVDYIGDSKTVDVHIRWLREKIEDDPSTPAKLVTVRGFGYRF 233


>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 229

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 239

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 121/231 (52%), Gaps = 5/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+K +   +   L+   + V   + GE   E+ +  + D  +LD+ L  + GFE+
Sbjct: 9   IYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGVDGFEI 68

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + ++        P+ +L+  +   D+V GL+ GADDYISKPF+  E VAR++   RR  
Sbjct: 69  CKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFRRQA 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S  ++   +  G ++++ + + V      I +T KE+++++LL + +   L+++M L  
Sbjct: 129 DSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDMLLQK 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      E + +DV I  LR+K+ +      YIETV G GY   +    E
Sbjct: 189 IWGFDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRFSDKEVRE 239


>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
 gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1271]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK    +
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYS 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
 gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++++D++A+  S+   L    +++ + + GE  +++ +  + D +ILD+ +  + G 
Sbjct: 1   MKIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A     Q+ I   DL +N D + V      I LT  E+ +++LL       L++   L
Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V+I  LR+K     G    I TV G GYVLR+ A 
Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRKTEQE-GEPRLIHTVRGVGYVLRDTAP 230


>gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 171/228 (75%), Positives = 196/228 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSENFNVY TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSENFNVYATDLGEEGADLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K+ TP+ ILSG ++IEDKV+GL  GADDY++KPF+K+ELVARI AIVRRS+
Sbjct: 61  EVLRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I T DL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+NA+ G+NYIETVWGRGYVLRE   DE
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASRGRNYIETVWGRGYVLREPLDDE 228


>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
 gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
          Length = 238

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 17/235 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E +   +   G   +E    +  + I+LD+ L  + G++
Sbjct: 5   KILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVMLPGMDGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+ +LS    + DKV GL+ GADDYI KPF+  ELVAR+ A++RR   
Sbjct: 65  VCTEIRKQS-NVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRCNS 123

Query: 122 HAQS--------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
              +               +   +L VN+   TV ++G  + +  KE +++  L+ R N 
Sbjct: 124 RTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASRPNQ 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T+E  L+ L+      + + +DV I +LR+KL++       I TVWG GY   
Sbjct: 184 VFTREQLLDKLWGYEYVGDTRTVDVHIKRLREKLTDKYNWS--IFTVWGIGYKFE 236


>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
 gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD+ +   + L L+ + + V + + GE+ +        D I+LD+ +  + G++
Sbjct: 5   KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++      DKV GL+ G+DDY+ KPF+ +E+VAR++AI+RR+  
Sbjct: 65  VCREIR-KKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRASK 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +    L VN+    ++V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR+KL      +  ++TVWG GY   
Sbjct: 184 VWGFEYYGDSRTVDVHIKRLREKLEGV-SDQWTLKTVWGVGYKFE 227


>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 224

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +++ +    D ++LDL L  + G E
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCRQVRAES-DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++   TV     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
 gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodospirillum centenum SW]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L+ E F V     GE+ + L        ++LD  L  + G EV
Sbjct: 9   ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR       TPV +L+      DKVRGL SGADDYI+KPF+  ELVAR+RA++RR+ 
Sbjct: 69  CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRAA 128

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+ L+   D+ ++L A  V   G  +HL   E++++           ++E  L+ ++
Sbjct: 129 PGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I +LRK L+     ++ I TV   GY L +N
Sbjct: 189 GHDVYVEPRTVDVHIRRLRKALNE-TDDQDLIRTVRSAGYALDQN 232


>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 225

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  ++L L+   + V     GE+G+   +    D ++LD+ L  + G  
Sbjct: 6   RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A   TPV +L+   +  DKV  L  GADDY++KPF  EEL+AR+RA++RR  G
Sbjct: 66  VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRRVEG 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + ++  G L+V+  A+ V   G  + LT +EY ++ELL+      L++E  L+ ++  
Sbjct: 126 --EEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  ++DV++  LR+KL    G    I TV G GYVLRE+
Sbjct: 184 GAGVDPNVVDVYVGYLRRKLE-GPGEGRLIHTVRGVGYVLRED 225


>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
 gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
          Length = 234

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE  +     Y    I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +    +++NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + + +DV I +LR+K+ + +     + TVWG GY   
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSDWS--LSTVWGIGYKFE 232


>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
          Length = 233

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ ++   ++  ++   F V   + G  G EL    + D I+LDL L ++ G EV 
Sbjct: 2   LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K++ P+ +L+      DK+ GL+ GADDY++KPF+  E+VARI+AI+RR+ G A
Sbjct: 62  KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEGKA 121

Query: 124 ----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I+ GDL +  D+  V +Q   + LT KE++++  L+  +    +++ 
Sbjct: 122 EIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ +++     E +I+DV +  LR K+        YI+T+ G GY + 
Sbjct: 182 LLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230


>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
 gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 232

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L    +NV + + G   +E+    +   +ILD+ +  + G 
Sbjct: 1   MKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VRRS 
Sbjct: 61  EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       Q+L+  GDL+++ +++ V   G  I LT  E+ +++LL   +   LT+  
Sbjct: 121 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++          ++V+I  LR+K +   G    I TV G GYVLRE A 
Sbjct: 181 ILEEVWGCDFPTSGNALEVYIGYLRRK-TELEGEDRLIHTVRGVGYVLRETAP 232


>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 224

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E F++Y    G+D + +    + D +ILD+ + +I G++
Sbjct: 3   RILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+      DKV+G + GADDY+ KPF+  ELVAR++A++RR + 
Sbjct: 63  LCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G+L +N       V    I L  KE++++  L+     T T++  +  ++  
Sbjct: 123 STSQTIKIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR+K S        I T+ G GY L 
Sbjct: 183 DYEGDERTVDVHIKRLREKFSKY--CIFVIRTIRGLGYRLE 221


>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
 gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
          Length = 235

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +    ++ L+ E +     + GE  +EL     F  I+LD+ L  + G +
Sbjct: 4   KILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  K STPV +L+      ++V G + GADDYI KPF+  E+V R++AI+RRS+ 
Sbjct: 64  VCKRLREEK-STPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA+ LIV   L ++ DA  V      ++LT KEY+++  L+   +    +E 
Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +    N I TVWG GY   
Sbjct: 183 LLKDVWHYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGYKFE 232


>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 239

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 122/231 (52%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           R+L++EDD  +A  + + L  E ++V     G+ G+ L +     DA++LD+ L  + G 
Sbjct: 5   RVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R      P+ I+S   S   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+ 
Sbjct: 65  QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQS       I  G L ++  A+T  V G+ + LT +E+ ++   +   +    +   
Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++  + +     ++  I +LR K+         + TVWGRGY L + A
Sbjct: 185 LNQVWGYQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKLVDPA 235


>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
 gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
 gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-Cer4]
 gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock1-15]
 gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
           BMB171]
          Length = 230

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E +   +   GE+ + +   +    ++LDL L  + G++
Sbjct: 6   RILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A    P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREMRSAS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     H    +   DL VNL   +V   GH I +  KE +++  L+   N   T+
Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L+H++      + + +DV I +LR+K+ + AG    + TVWG GY   
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHAGWA--LTTVWGIGYKFE 233


>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 224

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   LK E ++V     G++ ++     E+D +I+D+ + ++ G 
Sbjct: 1   MKILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR      PV  L+ + S +DKV GL SG DDY+ KPF  +EL+ARIR+++RRS 
Sbjct: 61  TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A++ +   DL+++     V   G  I LT KE+ +++ L   + T L++E  L H 
Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   E    ++DV+I  LRKK+         + TV G GYVL+
Sbjct: 181 WDFSYEGYSNMVDVYIKTLRKKIDRDF-EPKLLHTVRGTGYVLK 223


>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  282 bits (724), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 227

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD A+  S+   L    ++V + D G+  + +      D +ILD+ +  + G 
Sbjct: 1   MRVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR A    PV +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA+VRRS 
Sbjct: 61  ETCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSA 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +   DL+++L  + V      I LT  E+ ++E+        L +   L  +
Sbjct: 121 PGPGASQQLRFSDLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEEV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +          ++V++  LR+KL  A G    I T+ G GY LRE
Sbjct: 181 WGYDFPTTANSLEVYVGYLRRKLE-AQGEPRLIHTIRGVGYALRE 224


>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
 gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
 gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
          Length = 231

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIREKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 223

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
 gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
           BVS033A4]
          Length = 226

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA+ I+  L  E + V +   G+  IE+   ++   +ILDL L  + G+E
Sbjct: 3   RILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ ILS      DKV+GL  GADDYI+KPF   EL+AR+ A +RRS+ 
Sbjct: 63  ICQNIR-IKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121

Query: 122 HAQSLIVTGDL---SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  +   D+    +      VE  G  + L+  E++++  LS       ++E     +
Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      ++  + V I +LR+K+ +      YI TVWG GY   
Sbjct: 182 WGFDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225


>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 234

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A            +  GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 IAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 226

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
 gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
           zucineum HLK1]
          Length = 230

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ +LA  ++  L+ E + V     GE+ +   +    D I+LD  L  + G E
Sbjct: 5   RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+      D++RGL +GADDY+ KPF   EL ARIRA++RR 
Sbjct: 65  VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRL 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R G A+  +  GD+ ++  A  V+  G  +HL   E+++++          ++E  L+ +
Sbjct: 125 RPGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L NAA   + I TV   GY L  +A
Sbjct: 185 WGSDVYVEARTVDVHIGRLRKAL-NAADAGDPIRTVRSAGYSLDVDA 230


>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
           protein [Epulopiscium sp. 'N.t. morphotype B']
          Length = 227

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  L+++D+K +   I   L  E ++V     G + I   K   +D +ILD+ L +  
Sbjct: 1   MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYT 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  EL ARI+A++RR
Sbjct: 61  GLEVCQIVREFS-NVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRR 119

Query: 119 SRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           S    ++    +  GDL +  ++K V +  + I+LT KE+ M+EL +  +     +E  L
Sbjct: 120 SIQEKETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      +V+ +DV + +LR+K+    G   YI T WG GY  ++
Sbjct: 180 DSIWGKGYPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYFKD 227


>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G ++++ + +TV V G  I LT KE+ ++ +L+       +
Sbjct: 120 RFLTLNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 226

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 132/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDDK +A  +   LK   + V  TD G+ G+ +     +D +++D  L ++ G 
Sbjct: 1   MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV +LS +  ++D+V+GL++G DDY+ KPF+  EL+ARI A++RRS+
Sbjct: 61  SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L A+TV+  G  I L  +E++++E         LT+ M L  +
Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+         + T+ G GYVLRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETP-LLHTIRGAGYVLREAA 226


>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 234

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +  +++  L+ E + VY  + G   +E+ +  + D +ILD+ L  + GFE
Sbjct: 9   RILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  L+      P  ILS      DKV G   GADDY+ KPF   EL+ R+RAI+RR+ G
Sbjct: 69  VLAQLQSTGG-VPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   D+ +N  ++TV V+G  + LT KE+ ++ LL+       ++E  L 
Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   + V + +LR+K+    G    I+T+WG GY  
Sbjct: 188 RVWHSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGYKF 232


>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 233

 Score =  282 bits (723), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ E++ V     GE+ I+L K   F  +ILDL L  I G E
Sbjct: 6   KILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPKISGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    +  + +L+     EDK+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIREFS-NVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V   G  + LT  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
 gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parasanguinis F0405]
          Length = 233

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K ++  I+  +  E + V     G + +E+      D IILDL L +I G E
Sbjct: 3   RILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V      + LT +E++++  L+      +T+E 
Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV + +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232


>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E + V     GE+ I+L K   F  +ILDL L  + G E
Sbjct: 6   KILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPKLSGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +  + P+ +L+     E+K+ GL  GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  VCSKIRESS-NVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  GDL V++    V  +G  + +T  E++++  L        T+E  + 
Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +     NYI TV+G GY  
Sbjct: 185 QAFGYDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229


>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
 gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
          Length = 228

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V V   G +  E  K   +D ++LD+ +    G E
Sbjct: 3   KVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGK 121

Query: 122 HAQSLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+ +     + +N     LD++ V V G  ++LT KE+ ++ELL    N   ++   L+
Sbjct: 122 KAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+ +  G   YI T WG GY  +
Sbjct: 182 TIWGSTYPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYFK 227


>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 230

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   ++  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKL 227


>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  I+L L SE + V V   G  G+ L +  + D  ILD  L  + G E+
Sbjct: 5   ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLTGIEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+    + D+V GL +GADDY+ KPF+ EEL+ARIRA +RR++  
Sbjct: 65  CRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQEV 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + ++   DLS+N   + V      I LT KE+ ++E L        T++  L  ++   
Sbjct: 125 DEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  II+V++  LR KL    G K  I TV G GY LRE
Sbjct: 185 FMGDSNIIEVYVRYLRLKLEEQ-GEKRLIHTVRGVGYALRE 224


>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 239

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 8   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 68  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 126

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 127 RFLTLNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 186

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 187 VENIFQHVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 237


>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 240

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        + ++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10]
 gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component
           transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 231

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 159/230 (69%), Positives = 199/230 (86%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+A + SIELMLKSE FN+Y TDLGE+G++L K Y++D I+LDL L D+PGF
Sbjct: 1   MRVLLIEDDRATSQSIELMLKSEGFNIYTTDLGEEGVDLGKLYDYDIILLDLNLPDMPGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TP+ IL+G + I++KVRGL  GADDY++KPF+K+E+VARI AIVRRS+
Sbjct: 61  DVLKTLRVAKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG + VNLDAKTVEV+G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKL+ A  G+++IETVWGRGYVLR+  +++  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAAATHGEHHIETVWGRGYVLRDPVEEKAS 230


>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 229

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   I + L +E + V     GE+ +   K   +D I+LD+ +  + G  
Sbjct: 5   RVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  +   D++ GL+ GADDY+ KPF+  ELVARI+A++RR   
Sbjct: 65  VCQEIRKVS-KVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRVGT 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +    + ++L ++ V V+   I LT KE++++ LL+     + ++E  L  +
Sbjct: 124 EEKKEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      +V+ +D  + +LR KL  A  G N+I+TVWG GY     A
Sbjct: 184 WGFDYYGDVRTVDTHVNRLRDKLRAAGAG-NFIKTVWGVGYKFEVEA 229


>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
 gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
           TC1]
          Length = 239

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +     +  D  +LD+ L D+ GF 
Sbjct: 12  KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 72  VTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 131

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 132 LEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GYVLR
Sbjct: 192 EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVLR 234


>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 226

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 235

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 131/231 (56%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ +EL K  E+D ++LD+ L  + G+E
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSK 121

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +          S+I  GDL ++ +++ V +    I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 NKRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L +++     D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYFR 232


>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
 gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 223

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L + I+  L  E+++V     GE+ ++  +   +D ++LD+ L    GF
Sbjct: 1   MRILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R     TP+ +L+    IED+V+GL  GADDY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL+++ D + V   G  I L+ KE+ ++E L   +N  +T++    + ++
Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +A   K  I TV G GYV+RE 
Sbjct: 181 YDYEGGSNVIDVYIRYLRKKI-DAGYEKKLIHTVRGTGYVMREE 223


>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 230

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L+   F V     G   I      E D I+LD+ L D+ GF 
Sbjct: 5   RILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDMNGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR A  + P+  L+     EDK+ GL +G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 65  VTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTMQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S+I TG+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 125 ADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+K+   +     I+T  G GY+L+
Sbjct: 185 YDFNGDAGIVESYISYLRRKIDPHSSEP-LIQTKRGFGYMLK 225


>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 225

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+  L  E ++V     GE+G+EL     +D +ILD+ +  I G+ 
Sbjct: 7   KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGWS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R      P+ +L+  +   D++ G +   D+Y+ KPFN + LVA+++A++RR  +
Sbjct: 67  VCRKIREES-QVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL ++   + V++    + LT KEY ++      K   L++E  LN ++ 
Sbjct: 126 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +      +I+TV G GY    +
Sbjct: 186 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 224


>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 226

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGYKFEP 226


>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  +E+      D I+LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 SPTSLEEPIDVQGLMLDPTSHRVMVDEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEP-SGHDRLIQTVRGAGYRF 225


>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 236

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  I + L+ E + V     G   +   K +  DA++LD+ L D  G E
Sbjct: 12  RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R    S PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR+  
Sbjct: 72  VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAGA 131

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  A S +V GDL ++ D++ V   G  + LT  E++++  L       L+K   L+ +
Sbjct: 132 QQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDRV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++++I  LRKK+   AG +  I T+ G GYVL+ 
Sbjct: 192 WNYDFGGQANVVELYISYLRKKI--DAGHEPMIHTMRGAGYVLKP 234


>gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium
           japonicum UT26S]
 gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 235

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 154/228 (67%), Positives = 190/228 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYTTDLGEEGLDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG++ ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G+R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+  + E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACNGENYIETVWGRGYVLRDPDEAE 228


>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
           87.22]
 gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
           scabiei 87.22]
          Length = 244

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D +E    Y  D +ILD+ +  + G  
Sbjct: 12  RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 72  AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSTY 131

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A   +   DL ++L  + V      + LT  E+ ++E+        LT+E 
Sbjct: 132 ATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 244


>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
 gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
           [Streptococcus suis 89/1591]
          Length = 234

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 126/232 (54%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +A     YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233


>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 237

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 116/235 (49%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +    +  L+ E + VY    G +G +L   +  D IILDL +    G+E
Sbjct: 4   RILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 64  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E     + V + +LR+KL        +I TVWG GY    N  +ET
Sbjct: 183 LELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPNGGNET 237


>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ +  GD+ +N+    V V    + LT +E+ ++ELL+  K   ++ E   
Sbjct: 125 NGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          + V I K+R+K+        Y++TVWG GY + ++
Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 226

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G +I L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGYKFEP 226


>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
          Length = 267

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 6/239 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    + V   D G   +     +  D ++LDL L  + GFE
Sbjct: 19  RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           V R +R      PV +L+     ED++ GL++GADDY++KPF+  ELV R+ +++     
Sbjct: 79  VCRRMREHGP-VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVLRRARA 137

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +  G LS++  ++     GH + LT +E+ ++  L         +E  +  
Sbjct: 138 AAPADGTGPLSGGGLSLDPASRQASRDGHGLALTLREFDLLAFLLRHPGRAFGREELMRE 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           ++      ++  + V I +LR K+ +       I TVWG GY L    +    E   +A
Sbjct: 198 VWGWDF-GDLSTVTVHIRRLRGKVEDDPARPRLIRTVWGVGYRLDLAPESPGTEARPSA 255


>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 231

 Score =  282 bits (723), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ ED+K ++  I+  L+ E + +     GED ++     E + IILD+ L  + GFE
Sbjct: 4   RVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K S P+ +++      DK+ GL+ GADDYI+KPF+  ELVAR++A VRR   
Sbjct: 64  ICKRVRE-KSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEM 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   DLS++L    V+     I LT +E+++++ L+ +K+   ++E  L
Sbjct: 123 NINADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +++ +DV + +LR+K+ + +    YI T  G GY  +
Sbjct: 183 ERVWGYEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYFK 229


>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
 gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +  +V     GE+ ++L +   +D I+LD+ L    GF+
Sbjct: 4   RVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQIREFS-DVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I+  ++ ++ +++ V ++   I+LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 RDSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYFR 228


>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
 gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 124/223 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L  + + V +   GE G E  +   +D I+LD+ L  + G 
Sbjct: 2   MRILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLTGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +  + PV +L+   + EDKV GL  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 62  GLCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++     V      +HLT KEY ++EL    +N  L++   L++L+ 
Sbjct: 122 VAPNPILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + + V I  LRKKL       ++IETV+G GY L++
Sbjct: 182 FEDPPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRLKQ 224


>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 262

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 62/241 (25%), Positives = 111/241 (46%), Gaps = 17/241 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    F V     G   +        D ++LDL L  + G +
Sbjct: 9   RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLPGMDGLD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V RALR      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR R 
Sbjct: 69  VCRALRGKGP-VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRT 127

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                             ++    ++++  A+     G  + LT +E+ ++  L      
Sbjct: 128 GPRASAGVRSHAPERPDPVLRRAGITLDPTARRATKDGRELALTLREFDLLAFLLRHPGV 187

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAK 226
             T+E  +  ++      ++  + V + +LR K+ +       I+TVWG GY     +A 
Sbjct: 188 ACTREELMRDVWGWDF-GDLSTVTVHVRRLRGKIEDDPAAPRLIQTVWGVGYRFDAPDAP 246

Query: 227 D 227
           D
Sbjct: 247 D 247


>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    + ++LD+ +  +
Sbjct: 1   MKNISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V G  I LT KE+ ++ +L+       +
Sbjct: 120 RFLTLNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
 gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
           flavithermus WK1]
          Length = 223

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   + L L+ E F     D GE G+      + D I+LD+ +  + G+  
Sbjct: 4   ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDGYRF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+  L+  S   D+V GLQ GADDYI KPF+  E+VAR+ A++RR++G 
Sbjct: 64  CMHVRERS-QVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGT 122

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G + ++  A+ V+V G  + LT KE++++ L    +    T+E  L+ ++  
Sbjct: 123 DVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGI 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + +D  I  LR KL  A     YI+TVWG GY   E 
Sbjct: 183 HYVGSTRTVDTHIKTLRIKLGEAG---QYIQTVWGVGYKFDET 222


>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
 gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G ++++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G ++++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
 gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
           [candidate division TM7 genomosp. GTL1]
          Length = 225

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A +++  L+ E F V V   GE G+   +   +D I+LD  L  + G 
Sbjct: 1   MRILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR +   TP+ +L+    I D+V GL +GADDY+ KPF  EEL+ARIR+++RR +
Sbjct: 61  EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++N     V+     + LT KE+ ++E L   +   +TK+M LNH++D
Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
              +     I+V+I  LR K+     G    I T  G GY + 
Sbjct: 181 YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223


>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D +ILD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 256

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +    +  L+ E + VY    G +G +L   ++ D IILDL +    G+E
Sbjct: 23  RVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKDGWE 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I+RR   
Sbjct: 83  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQ 141

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V  +++ LT KE++++ L++       ++   
Sbjct: 142 VPIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++D   E    I+ V + +LR KL        +I TVWG GY    N   ET
Sbjct: 202 LELIWDTEHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPNGGSET 256


>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           R309803]
 gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 230

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 230

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   +   L + N+ V      E G +L   ++ D ++LD  L  + G  +
Sbjct: 6   ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R    +  TP+ +L+      D+V+G +SGADDY+ KPF+   LVAR++A++RR  
Sbjct: 66  AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +L  I  G L ++L +    V    + L   E+++++      N   T+   L+ +
Sbjct: 126 PEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LR KL +  G  +YI+TV G GY  
Sbjct: 186 WGENVVVEERTVDVHIRRLR-KLLDPVGAADYIQTVRGAGYRF 227


>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 256

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +D+  L   + L L+ E   V     G   +E     ++D +ILDL + D  G+ 
Sbjct: 34  RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+ +L+      D++ G + GADDY++KPF+  ELVAR++A++RR+R 
Sbjct: 94  VCREVRRE-MDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARN 152

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +    L +++ A+ V+V G  I +LT KE+ ++  L+      +++E  L  +
Sbjct: 153 ERARGERLQFPGLVIDIPAREVKVDGRTIGNLTPKEFDLLLFLARHPGQVMSREKILEKV 212

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +++ +D  I  LR+KL        +I TVWG GY   
Sbjct: 213 WGYDFYGDLRTVDTHIKNLREKLGREHA---WIATVWGVGYKFE 253


>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
 gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
           7061]
          Length = 240

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCNQIRDKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        + ++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 237

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 129/230 (56%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ EN++V   + GE  ++    Y++D I+LDL +  + G E
Sbjct: 6   RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCEKIRKQK-ATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A        + ++V   L+++ DA  V      I LT KEY+++  L+   +    +E 
Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +    N I TVWG GY   
Sbjct: 185 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFE 234


>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 229

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A      L+   F V V + GE G+E     +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICREVRQKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRFK 228


>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
 gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH603]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V   +I LT KE+ ++ LL+       +
Sbjct: 120 RFLTLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D +ILD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 242

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFIKQQTEE 242


>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 200]
 gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++  I   L+ E F V     G   +EL   + F  IILDL L  + G +
Sbjct: 3   RILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGED 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + P+ +L+   + E+++RGL  GADDYI KPF+  ELVAR+ A++RR R 
Sbjct: 63  VCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYRS 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +            GDL ++   +   ++G  + LT  E++++  ++       T+   L 
Sbjct: 123 NNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                      + ID  I  LR+KL         I TV+G GY  
Sbjct: 183 IAQGALPTGFDRTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGYKF 227


>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
 gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
           proteobacterium NaphS2]
          Length = 224

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   LK   F V V   G DG+ L +   +DA ++D+ L  + G 
Sbjct: 1   MRILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  KI+TPV ILS   S++D+VRGLQ+G DDY++KPF+  EL+ARI A++RRS 
Sbjct: 61  TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ S +  G+L+++L  + V+  G  I L  +E+ ++E L   K   ++K   L H+Y
Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  ++DV +C++R K+      +  I TV G GYVL+E 
Sbjct: 181 DYSFDPQTNVVDVLVCRVRNKVDKDF-DRKLIHTVRGMGYVLKEQ 224


>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 235

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++A+A  + + L++EN++V+    G+D +   +    D  ILD+ L D+ GF +
Sbjct: 8   ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLPDMDGFSI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + PV +L+      DK+ GL  GADDYI+KPF   EL+AR++A +RR    
Sbjct: 68  CQQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTKY 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + LI    L ++       +   R+ LT  E+ ++ +L   +   ++ E   
Sbjct: 127 NSAEPNQEEHLIAFSGLVLDKKTHECTLNEKRLSLTPTEFSILWVLCSNRGRVVSSEELF 186

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++  +        + V I  LR+K+ ++A    YI+TVWG GY + +
Sbjct: 187 HEVWGDKYFTNSNNTVMVHIRHLREKMHDSAEHPKYIKTVWGVGYKIEK 235


>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
 gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G++     ++D  ILDL L  + GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRDEK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228


>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
 gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
          Length = 230

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A      L+   F V V + GE G+      EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICREVRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
 gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
           DSS12]
          Length = 229

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   +  +L    FN    +  +  I +      D I+LD       G +
Sbjct: 4   KILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADDY++KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 SPTSLEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +     I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SEHDRLIQTVRGAGYRF 225


>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 234

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 7   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVSGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 67  ICQKIREKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 126 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 185

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 186 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 234


>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 224

 Score =  282 bits (722), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   + ++D IILD+ +  + G+
Sbjct: 1   MKILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+    I++K++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V+   K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DLGDSKPLIHTKRGLGYVLKED 223


>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
 gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
          Length = 233

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + IV GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
 gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
 gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
           mutans UA159]
 gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
          Length = 235

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E ++      G + +   +    D IILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEVR-KNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          I+ GDL +  DA   + +G  + LT +E++++  L+      +T+
Sbjct: 122 IESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMTR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++
Sbjct: 182 EHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMK 232


>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 230

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 274

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/239 (27%), Positives = 111/239 (46%), Gaps = 14/239 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    F V     G   +        D ++LDL L  + G E
Sbjct: 9   RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR      PV +L+     ED++ GL+ GADDY++KPF+  ELV R+ +++RR R 
Sbjct: 69  VCRALRGRGP-VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRT 127

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             Q           +     ++++  A+     G  + LT +E+ ++  L        T+
Sbjct: 128 GPQVPGSSAPAPGGVAHRAGITLDALARRATRDGRELALTVREFDLLSFLLRHPGVAFTR 187

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDE 228
           E  +  ++      ++  + V + +LR K+ +       I+TVWG GY       A DE
Sbjct: 188 EELMREVWGWDF-GDLSTVTVHVRRLRGKVEDDPAAPRLIQTVWGIGYRFDAPPEADDE 245


>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 218

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q     G + +N  ++ +EV G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 225

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   IE  L  +N+ V +   G+   E    +++D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR     TP+ +L+   +I+D+V+GL +GADDY+ KPF+ EEL AR+RA++RR  
Sbjct: 61  SLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L V+  +  V  Q   + L+ KEY+++E          ++   L+HL+ 
Sbjct: 121 TSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   +   I  LR+KL  A    + IETV+G GY L+E
Sbjct: 181 MDQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRLKE 223


>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
 gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
           2876]
          Length = 235

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 129/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+KA+   I+  L+ ++  V     GE+ +EL K  EFD I+LDL L  I G  
Sbjct: 10  RVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKIDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +++      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RR+  
Sbjct: 70  VCRQIREFS-NVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSF 128

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  +  +I+ GDL ++ D + + +    ++LT KE+ ++ELL +  N    ++  LN
Sbjct: 129 NLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLN 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      + + +DV I +LR+K+ +      Y+ T WG GY
Sbjct: 189 IVWGYEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231


>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 237

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  ++  L  E + V     G++ ++  +  + D ++LD+ L    G EV
Sbjct: 5   ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR +  
Sbjct: 65  CREVR-KKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVA 123

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A          + IV G L +  DA  V  +   I LT +E++++  L       +T+E 
Sbjct: 124 APVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV I +LR+K+ +      +I T  G GY LR   ++
Sbjct: 184 LLQTVWGYDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYLRTPEQE 237


>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR   IL+ +D++ +A  I + L+ E ++V     G++ + + +    D ++LD+ +  +
Sbjct: 1   MRDISILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R    + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRRIREQH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R       +   ++ +  G L +  D +TV + G  I LT KE+ ++ LL+         
Sbjct: 120 RFMKLNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNV 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++          + V I  LRKKL        +I+TVWG GY  
Sbjct: 180 ENIFQQVWGEAYFEGGNTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTF 229


>gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 231

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ +NF V     GEDG++         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPVVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR    S  + +L+ +    DK++GL++GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +  ++++G+  ++L++K        ++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SSNTSSDILISGEFKIDLNSKIAYKNDKELNLTPKEFLLLKIFMENIGRSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231


>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  
Sbjct: 5   RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++
Sbjct: 65  VCKEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 222


>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 229

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ + + I   LK+EN+N+     G+D +E      F  IILDL L  I G E
Sbjct: 5   KILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKYD-NTFQLIILDLMLPYIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R    + PV ILS  +   D+V GL  GADDY+ KPF+  EL AR++A +RR   
Sbjct: 64  VLRKIRE-NSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYIY 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +    L ++        +   ++LT KE+++++      +   TK    N
Sbjct: 123 YNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIFN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 183 GVWENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKLGE 229


>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
          Length = 232

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
 gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
          Length = 238

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +A  + L L+ E + +     G+  +   +   +DA+ILDL L  + G E+
Sbjct: 5   ILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR    
Sbjct: 65  CRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAM 124

Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+L++         LS++  ++ V+++G  + LT +E+ ++   +       ++   L 
Sbjct: 125 GQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLALLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++  + E     ++  I +LR K+       + I TVWG+GY     +++
Sbjct: 185 QVWGYQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKFAPMSQE 235


>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
 gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar sotto str. T04001]
 gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis IBL 4222]
          Length = 232

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED+K +   I++  +   +++     GEDGI   +    D +ILD+ L  I G
Sbjct: 1   MKQILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILPGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V + LR       + +L+  +   D++ GL+ GADDY+ KPFN  EL+ R  AI++R 
Sbjct: 61  FNVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRL 120

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G++Q+     + +G   +   A+ V   G  I LT KEY ++E L    N  ++K+  L
Sbjct: 121 HGNSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++    + + K +DV + +LRKK+ +      YIETVWG GY  +E
Sbjct: 181 DIVWGYEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYRWKE 228


>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 230

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++++D++A+  S+   L    ++V++ + G   +E+ +  + + +ILD+ +  + G 
Sbjct: 1   MKIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G +Q  +   DL +N D + V   G  I LT  E+ +++LL       L++   L
Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V+I  LR+K + + G    I TV G GYVLR+ A 
Sbjct: 181 EEVWGYDFPTSGNALEVYIGYLRRK-TESEGEPRLIHTVRGVGYVLRDTAP 230


>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
 gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
           7001]
          Length = 238

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAII 49
           R+L++EDD+ +  +++  L+ E F+V     G D +   +               F  ++
Sbjct: 4   RLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVV 63

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LDL L  + G +V RALR A   TP+ ++S   S  D+V GL+ GADDY+ KPF   ELV
Sbjct: 64  LDLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELV 123

Query: 110 ARIRAIVRRS--RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           AR RA++RRS  +G A+ ++   ++ +  +   V   G  ++L+ KEY+++EL       
Sbjct: 124 ARCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRR 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++  L H++      + K +DV I  LR+K+        ++ TV G GY  
Sbjct: 184 VWSRDKLLEHVWGVDYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGYRF 237


>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 232

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C]
          Length = 233

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 166/227 (73%), Positives = 195/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVE+ GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227


>gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 245

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  +EL L      V V   G+DG+       +D I+LD+ L    GF+
Sbjct: 8   RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  K  TP+ +++  +   DKV GL+ GADDYI+KPF+  E++AR++A+ RR   
Sbjct: 68  ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             ++        I  G + V  + + V V+G  + LT KE++++ L +       +++  
Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ ++  +       ++  I +LR K+        Y++TVWG GY   E  +
Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239


>gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
 gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis
           biprosthecum C19]
          Length = 233

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 163/224 (72%), Positives = 192/224 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K++TPV ILSG S I+ KV+ L  GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ AA G +YIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVAADGNHYIETVWGRGYVLRDP 224


>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G ++++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
           sanguinis SK36]
 gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           [Streptococcus sanguinis SK36]
 gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
 gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
 gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
 gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
 gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
 gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
 gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
 gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
 gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
 gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
 gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
 gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
 gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
 gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
 gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
 gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
 gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
 gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
          Length = 233

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ +E+ +  + D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +  G+L +  DA   +  G  + LT +E++++  L+      +T+E 
Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232


>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L++E ++V     GE+ ++  K      +ILD+ +  + G   
Sbjct: 4   ILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMMPRMDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    +TP+ +LS      DK+ GL +GADDY+ KPFN  EL+AR++A +RR    
Sbjct: 64  CLKIREIS-NTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQALI 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    SLI+  DLS++    +V+++G+ I LT  E+ ++ LL+       + E    ++
Sbjct: 123 GKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYENV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +          + V I  LR+KL        YI+TVWG GY + 
Sbjct: 183 WKAPYGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGYKIE 226


>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  282 bits (722), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V     G + IE  K  ++D ++LD+ +    G E
Sbjct: 3   KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNR 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++    + V LD++ V V G  ++LT KE+ ++ELL    N   ++   LN
Sbjct: 122 KQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+    G   YI T WG GY  +
Sbjct: 182 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 227


>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
 gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
          Length = 234

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
           10712]
          Length = 225

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
 gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-29]
          Length = 230

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G+ + LT KE+++++L    +N   TK     
Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 239

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 122/231 (52%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD ++   ++  L+ + ++V V   G +G++  + ++   +ILDL L D+ G++
Sbjct: 3   RILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   +    V +L+   S  DK+ G Q GADDY++KPF+  EL AR++AI+RR R 
Sbjct: 63  LCQQM-QKETGVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     ++    L ++ + + V  +   I+LT  E+ ++  ++        +   +  
Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++D   E + +++DV I ++RKKL         I TV G GY     A  E
Sbjct: 182 VWDFNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFEPPAPKE 232


>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 232

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S++  G ++++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221


>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 224

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   I++ L++  +   +    ++  +  K ++ D I+LD+ + +  G+E
Sbjct: 3   KILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ +R     TPV +L+  S   DKV GL+ GADDYI KPF+ +EL+AR++A++RR+  
Sbjct: 63  ILKWIRREH-QTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I+   L +++D+ T+  +   + +  KE+++I  L+  KN   T+E  L  ++
Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL +  G    IETVWG GY   
Sbjct: 182 GYDYPGDSRTVDVHIKRLREKLQD--GENWQIETVWGVGYKFE 222


>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
 gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
          Length = 281

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 54  KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 114 ICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 172

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 173 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 232

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 233 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 281


>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
 gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Algoriphagus sp. PR1]
          Length = 234

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++H I++ L    + + V + G +G E+     FD IILD+ L ++ G  
Sbjct: 5   KVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEMDGIA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR     TP+ +++  S   DKV GL+SGADDYI+KPF   E +AR++AI+RR   
Sbjct: 65  ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    L ++   + V +   R+ LT KE+ ++ L++     + ++   L
Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          ++  I +LR K+       N+I T WG GY   + 
Sbjct: 185 ELIWGYDFSGYEHTVNAHINRLRAKIEKDPNNPNFILTTWGVGYRFNDE 233


>gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
 gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9313]
          Length = 245

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIP 58
           R+L++EDD A+  +I   L +E F   +   G + + +      ++FD IILD+ L  I 
Sbjct: 18  RLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIG 77

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R LR     T + ++S   +  D+V GL+ GADDY+ KPF+  ELVAR RA +RR
Sbjct: 78  GLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRR 137

Query: 119 SRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  +      +I  G+L + ++   V   G  + L  KEY++++LL       L+++  
Sbjct: 138 YQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQI 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      + K +DV I  +R+K+         I TV G GY  
Sbjct: 198 LERIWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRF 244


>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
 gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
 gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21]
          Length = 231

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 155/227 (68%), Positives = 193/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLRDPNEE 227


>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
 gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus R309803]
          Length = 232

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I++ +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 239

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +A+ +++ L     +  +   G  GIE      +D IILD+ L  + G E
Sbjct: 5   KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   I  P+ +L+  S  +DKV  L +GADDYI+KPF+  EL AR+ A +RR R 
Sbjct: 65  VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124

Query: 122 HAQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +   +          L ++ +   V +    I +T KE+ ++ L       T ++   
Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++          ++  I +LR K+        YI TVWG GY  
Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231


>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L + +   L+ E F +     G   + L +  + D IILDL L  I G EV
Sbjct: 6   LLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLPGIDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR    +  V +L+  +   D+V GL+ GADDY++KPF+  ELVAR+RA+ RR R  
Sbjct: 66  CHRLRTFSDAY-VLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRPRHA 124

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   + +G L++++      + G  + LT  EY ++ +L+       T+   +  +
Sbjct: 125 DDEPAPLLVQSGPLTIDVARHEALLAGEPLKLTNLEYALLSVLASAPGRVFTRAQLIERV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +IDV I  LRKKL +      +I TV G GY   +
Sbjct: 185 WGNDYFGDDHVIDVHIANLRKKLGDDPTRPTFIMTVRGIGYRFGD 229


>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ ++  I++ LKS  +N  +   G++  E    Y  D ++LD+ +  I G +
Sbjct: 7   KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  K  TPV +++      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  ILKWIRKQK-ETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSS 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DLS++  +  V      I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 ENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I +LR+KLS  +G +  I+TVWG GY    N
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKLS--SGEQWEIQTVWGVGYKFEVN 228


>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+  N++V V + G+   +L    +FDAI+LDL L  + G  
Sbjct: 3   KILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ LR  KISTPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + K V      + LT +EY+++   + R    + +E  L 
Sbjct: 123 DHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E +++D+ I  LR+K+         ++TV G GY + 
Sbjct: 183 AVWGYEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGYTMV 228


>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 238

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+ E + +   + GE  ++     ++  I+LD+ L  + G E
Sbjct: 7   RILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLPGMDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K +TPV +L+      ++V+G + GADDY+ KPF+  E++ R++AI+RRS  
Sbjct: 67  VCTRLRQTK-ATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A         + IV  +L +  DA  V   G  I LT KEY+++  L++  +   ++E 
Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  +++     +++ +D  + +LR+KL+  +      I TVWG GY L 
Sbjct: 186 LLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLE 235


>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
 gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
          Length = 222

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++   + E +  +    G++ +E    + FD I+LD+ +    GF+
Sbjct: 3   KILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    +TPV +++      DK+ G   GADDYI+KPF+ +EL+ARI+A+++RS  
Sbjct: 63  TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV GDL VN+ + TV + G+ + LT KE+ ++  L+   +  L++E  L  ++  
Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D  I  LR++L +    +  I+TVWG GY  
Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGYKF 218


>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 232

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RR    
Sbjct: 65  CQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSSFQ 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+ +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 125 QTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEEIF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL      +  I TVWG GY + +
Sbjct: 185 ERVWNEDGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGYKIEK 232


>gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 163/226 (72%), Positives = 192/226 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIELMLKSE FNVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLIEDDSATAQSIELMLKSEGFNVYTTDLGEEGVDLGKIYDYDLILLDLSLPDMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LRV K++TPV ILSG S IE KV+ L  GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TGD+ VNLDAKTVEV G+R+HLTGKEY+M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ A  G +YIETVWGRGYVLR+  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAVANDGNSYIETVWGRGYVLRDPQE 226


>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
 gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
           29220]
          Length = 243

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L+EDD  +A  ++L LK E + +     G   +E  + + +DA+ILDL L  + G E
Sbjct: 9   KIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY++KPF+  EL+AR++A+ RR   
Sbjct: 69  ICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQEA 128

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +Q+      ++    + ++  A+ V   G  I LT +E+ ++   +       +++  L
Sbjct: 129 MSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQALL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++  + E     ++  I +LR K+   A     I TVWGRGY L
Sbjct: 189 DQVWGYQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234


>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 136/228 (59%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   I + L+ ENFNV     G D +EL K    D I+LD+ +  I GFE
Sbjct: 5   KVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGIDGFE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R  + +   P+ +L+      DKVRGL+ GADDYI+KPF   EL+ARI A++RRS
Sbjct: 64  VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + +++  GD+ ++ D   V+ +G  I LT +E+++++ L+  K   +++E+ 
Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++   +  + + +DV I KLRKKL +      YIETV G GY+++
Sbjct: 184 LSEVWGCGNLGDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMIK 231


>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 227

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 94/228 (41%), Positives = 142/228 (62%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L+ E + V     GE+ I   +  E+DAIILD+ L  + GF
Sbjct: 1   MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  K   P+ +L+   +I+DKV+GL  GADDY+ KPF  EEL+ARIR ++RR+ 
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A ++I   +L V+LDAKTV   G  I L+G+EY ++E L   K   L +E   +H+++
Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E    +IDV+I  LRKK+ + +     I T+ G GYVLR + ++E
Sbjct: 181 YEYEGGTNVIDVYIRYLRKKI-DDSYTPKLIHTIRGLGYVLRVDNENE 227


>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 234

 Score =  281 bits (721), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD+++A      L+   F V +   G+ G++     E+D I+LDL L  I GFE
Sbjct: 3   KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K  TPV ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VLRKVRAEK-DTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYER 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q L+    L ++  A+ V      ++LTGKE+ ++  L+   N   TKE    
Sbjct: 122 LTGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      ++  + V I KLR+K+        YIET+WG GY  
Sbjct: 182 RIWGMDSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226


>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 233

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G++ + + +    D +ILDL L +I G E
Sbjct: 3   KILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   +  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    + S IV GDL +  D    + +G  + LT +E++++  L+      +T+E 
Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +  G   YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232


>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 238

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E +       G   +   +    D ++LDL L    G +
Sbjct: 17  RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+      D V+GL++GADDY++KPF   ELVAR+RA +RR   
Sbjct: 77  ICQDIRTQS-TVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGET 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GD+ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 136 GQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGY 195

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234


>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 236

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 117/236 (49%), Gaps = 9/236 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I+L L+ E F  Y    G   I+  +  + D IILDL L  + G 
Sbjct: 1   MDILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGL 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120

Query: 119 SRGHAQSLIVT--GDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S  H+   +V      +V++D  T   Q        + LT  E+ ++   + +      +
Sbjct: 121 SLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVWNR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              ++ L+      + +++D  + +LRKK+        +I+TV G GY   +N  D
Sbjct: 181 TQLIDKLWGNDFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDNRVD 236


>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A  I   L+ ENF V +   G +G+   K  +FD +ILD+ L  I GF 
Sbjct: 4   KILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQIDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L +++  K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 64  ILHSIQEEK-DIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ I+   L +N D + V V G  ++L  KE++++  L+   N   +KE  
Sbjct: 123 IKGKFVKPPKNNIIIRGLEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKEDL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++      +   + V I ++R+K+ ++     YIETVWG GY LR
Sbjct: 183 FEKIWGLDAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRLR 230


>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 225

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   +++ L++  F+    + G+  +++    + DA+++D+ +  + GF +
Sbjct: 8   VLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGFSL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+  L+      DKV+GL+ G DDYI KPF+  EL+ARI A++RR+   
Sbjct: 68  CERIR-WQSDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHA 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G L+++   + V V G  + LT KE+ ++  L+  +    ++E  L  ++   
Sbjct: 127 GNHDLSFGPLTIDERGRKVTVDGEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               V+ +D  I  LR KL  A+    +I TVWG GY   
Sbjct: 187 YTGNVRTVDTHIKTLRMKLKQAS---EFIHTVWGIGYKFE 223


>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 277

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 44  RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 104 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 164 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 223

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 224 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269


>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 225

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D++ L   ++L L  E + V     GE+G+E  K   +D +ILDL L  I G  +
Sbjct: 4   ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDGLTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+      DK+ G++ GADDY++KPFN  EL+ARIRA+ RR+   
Sbjct: 64  CKEVRSFS-NIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTTP 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  GD+++N+  K V+  G  I LT KE++++ LL+       +K+  ++ ++
Sbjct: 123 YVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   ++V I KLR+K+ +      +I T WG GY ++
Sbjct: 183 GFDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYMK 225


>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
 gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-42]
          Length = 230

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     +  I  GDL+++    TVE +G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L+ + + V     G + ++  +    D ++LDL + ++ GFE
Sbjct: 6   KILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPEMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    +TPV IL+    +EDK  G   G DDY++KPF+  EL  R++A++RR  G
Sbjct: 66  VCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVSG 125

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G L +N   + V + G  ++LT KE+ ++ +L+       +++  L
Sbjct: 126 EELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      +   + V I ++R+K+        Y+ TVWG GY   
Sbjct: 186 DMVWGNEYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGYKFE 232


>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
 gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  + + I + L++E            G+E  K  + D IILD+ +  + G +
Sbjct: 4   KILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K S P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RRS  
Sbjct: 64  ACLKIREEK-SMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + + +I  G+L +N D + V VQ   I LT KE+ ++ELL+  K   L+ +   
Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I  +R+K+        YI+TVWG GY +
Sbjct: 183 EAVWKEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGYKI 228


>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  ++  +E+ L+SE + V   D G D +E  +  E D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +LR +R     T V +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R    
Sbjct: 64  LLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGK 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL +N   + V   G RI LT +E+ ++  L   K   L +E  L
Sbjct: 124 PHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      +  ++DV+I  +RKK+ +  G +  I TV G GYVL+E 
Sbjct: 184 AAVWGYDYYGDTNVVDVYIRYVRKKI-DYGGTQELIHTVRGVGYVLKET 231


>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
 gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +  +V     GE+ ++L +  +++ I+LD+ L  + GF+
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQQVREFS-DVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTER 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       IV GD+ ++ + + V +    ++LT KE+ ++ELL++ ++   ++E  LN
Sbjct: 123 QTEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYFR 228


>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 230

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL ++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
 gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
          Length = 260

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260


>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 233

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+ ALA  +   L+ E + V     GE+ + L    + D ++LD  L  + 
Sbjct: 3   MKPLILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLS 62

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV R LR    +   P+ +L+      DK+RGL +GADDY++KPF+  EL+ARIRA++
Sbjct: 63  GIEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAML 122

Query: 117 RRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR +   Q  ++  GD++++L A  V      +HL   E+++++          ++E  L
Sbjct: 123 RRVQPVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++      E + +DV I +LRK L+      + I TV   GY L
Sbjct: 183 NAVWGPDIYVEPRTVDVHIRRLRKALNGD-NDADIIRTVRAAGYAL 227


>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
 gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 242

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++   S  DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E+ ++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  +
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTE 241


>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 241

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
 gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
 gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
 gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
 gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Streptococcus suis
           98HAH33]
 gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
 gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
 gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
           C-terminal [Streptococcus suis GZ1]
 gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
 gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
          Length = 234

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RRS  
Sbjct: 63  VARTIRKTS-NVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +V GDL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY ++ N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233


>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 235

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I   L+  NF V     G+  ++L +      ++LD+ L D+ GFE
Sbjct: 5   KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ ILS      DK+ GL+ GADDYI KPFN  EL ARIR+++RR+  
Sbjct: 65  ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTSR 124

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   +    +  G   + +  + +   G  + LT +E+Q+++    ++N  +T++  L+ 
Sbjct: 125 NTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLDE 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      + K +DV I +LR+K+ +      +++TVWG GY  +E+ 
Sbjct: 185 VWGLNYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCFQESG 232


>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 241

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 124/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  NF V     G D + + +  +FD ++LDL L  + G +
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGEQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ LR+ +  TPV +L+   +  DKV GL+ GADDYI KPF+  E++ARI A++RR   
Sbjct: 63  VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       A+++  TG  +++     V      + LT KE++++E L   +N  L+
Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  L  ++      + +++D+ I  LR+K+        Y+ TV G GY
Sbjct: 183 RDQLLQGVWGFDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGY 231


>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
 gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermus scotoductus SA-01]
          Length = 225

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD AL   +   L+   F V     GE  +EL      D IILDL L  + GF
Sbjct: 1   MRVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFPRA--DLIILDLMLPKLDGF 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  +   P+ +L+     E++V+GL+ GADDY+ KPF+ +E+VAR++A++RR+ 
Sbjct: 59  KVLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAG 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G L +    +   ++G  + L+  E+ ++  L+       T+E  L  ++ 
Sbjct: 119 LKEE--LCYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  +++DV I  LRKKL +      +IETV G GY  RE
Sbjct: 177 PDFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRFRE 219


>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   LK   + V +   G   +E+      + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       ++ +   DL ++ D + V     +I LT  E+ ++ LL       L++  
Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++          ++V+I  LRKK    +G    I TV G GYV+RE
Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKKTEE-SGEPRLIHTVRGVGYVMRE 229


>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 242

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D++A+   + + L+ E F+V     G+  +        D ++LD+ L DI GF
Sbjct: 18  IRVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR +    P   L+   + EDKV GL  G DDY++KPF   EL+AR+RAI+RR+ 
Sbjct: 78  AVCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAG 137

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   DL ++ + + V   G  + LT  EY+++  L       LT+   L+H+
Sbjct: 138 AADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + ++++ ++  LR+K+ +       I TV G GYVLR
Sbjct: 198 WGHDFGGDARVLETYVSYLRRKIDDVP--PPLIHTVRGVGYVLR 239


>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ ++ + + ++LK E + V     G  G+   + +  D IILD+ L DI G E
Sbjct: 5   KILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDINGNE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R +  S P+ +L+  S I DK+ GL+ GADDY++KPF+  EL+ R++A++RR+  
Sbjct: 65  VCKMVR-SNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++   D+ +NL  K +     RI LT  EYQ++EL     +   T+E  L  ++
Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D+ I +LRKK+ + +    YI T +G GY  +
Sbjct: 184 GYDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCFK 226


>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 228

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 232

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   + V   + G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       +S +   DL ++ D + V   G  I LT  E+ +++LL       L++  
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++          ++V+I  LRKK +   G    I TV G GYVLRE+
Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKK-TEGEGDARLIHTVRGVGYVLRES 230


>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 244

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E + V     G D ++    Y  D I+LD+ +  + G  
Sbjct: 10  RILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR +   TPV +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 70  AARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 129

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A   +  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 130 AAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR
Sbjct: 190 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLR 237


>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 277

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 43  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R  +  TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 103 ICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 162

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LSV+  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 163 LARDSRVDAGTLDVAGLSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDLL 222

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + +  
Sbjct: 223 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDAP 277


>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
          Length = 226

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGYKFEP 226


>gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510]
 gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510]
          Length = 246

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 149/227 (65%), Positives = 189/227 (83%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ++A SIELML +E F V  TDLGEDG+E+ K Y++D IILDL L DI G+
Sbjct: 1   MRVLLVEDDSSVAKSIELMLNTEGFIVDSTDLGEDGLEIGKLYDYDIIILDLMLPDIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+++TP+ ILSG++ +++K++GL  GADDY++KPF+K EL+ARI+AIVRRS+
Sbjct: 61  EVLRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S+I TG L+VNLD +TVEV    +HLTGKEY ++ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVF+CKLRKKL+ A  G NYIETVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLAAATQGDNYIETVWGRGYVLRDPHEE 227


>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 231

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  +   L+ +   V     G + +        D ++LDL L  + G +
Sbjct: 4   RILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMDGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+ +    D+V GL++GADDY++KPF+  EL  R+++++RR+RG
Sbjct: 64  VCRKLRERWP-VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRARG 122

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++  G L V++ A  V +   +I LT +E+ ++  L        ++   L+ 
Sbjct: 123 ASTPAGTGVLRDGTLVVDVGAHEVRLGDGQIMLTAREFDLLAHLMRNPRQAFSRSALLDQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +   + V + +LR+K+         I TVWG GY    
Sbjct: 183 VWGWSF-GDSSTVTVHVRRLREKIEPDPTAPRRIVTVWGVGYRYEP 227


>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 230

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +    +S  F V     G +G+E+    +   ++LDL L  + G +
Sbjct: 5   RILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGMSGLD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+        PV +L+      D++ GL+ GADDY+ KPF+  ELV RIRA+++R+
Sbjct: 65  VCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKRA 124

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +G A+    S      L+++LDA  VEV G    LT  E++++  L   +    T++  L
Sbjct: 125 QGVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           N ++    E   + +D  + +LR+K+   A     IET+ G GY  +E 
Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGGYAA---MIETIRGVGYRFKEQ 230


>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
           family [Candidatus Kuenenia stuttgartiensis]
          Length = 223

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K LA+ ++  L+  +F V   + GE+G+ +   + +D ++LD+ L  + GF
Sbjct: 1   MRILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPLMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R + +  P  +L+   +IEDKVRGL  GADDY+ KPF+  EL ARIRA++RR +
Sbjct: 61  EILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H Q+ +   DLS++L    +   G  I LT KE+ ++E      N  LT+     H++D
Sbjct: 121 VHYQTKLTVADLSLDLATHRLYRNGETIDLTNKEFALLEFFLRNLNIVLTRTQITEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DVF+ +LR K+         I T+ G GY+++E
Sbjct: 181 YNFDSFTNVVDVFVNRLRNKIDKN-RETKLIHTIKGVGYIMKE 222


>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
 gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
           L37603]
          Length = 241

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F  +    G++  +L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ATQLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTT 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 TPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY    N  DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVNTNDEPA 240


>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
 gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
 gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
          Length = 236

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 127/235 (54%), Gaps = 9/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+ +D+K + + ++  L+ E + V V   GE+ + L    +++ +ILDL +  + G 
Sbjct: 4   IRILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR  K + P+ +L+      DKV GL  GADDYI+KPF+  E++AR+++++RR  
Sbjct: 64  EVCRRLR-NKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I   DL+++L    + + G  + LT KE+++++ L+       TK  
Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              ++++     +   + V I KLRKK+        +I+TVWG GY      +DE
Sbjct: 183 LFRNVWESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGYKFV-GEQDE 236


>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  281 bits (721), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D +ILD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + +N + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 233

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 157/224 (70%), Positives = 191/224 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRDP 224


>gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae]
          Length = 250

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 9/221 (4%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           + + ++  L  E F+  +   G   + L +   FD I+LD+ L  + G EV + LR   +
Sbjct: 29  ILNLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLRAKGV 88

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH--------- 122
            TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G          
Sbjct: 89  KTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNI 148

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A    + G L V  +   V      + LT KE++++  L    N TLT+E  L  ++   
Sbjct: 149 ADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWGYD 208

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +++DV I KLR+K+ +      +I T+ G GY  +E
Sbjct: 209 FGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKE 249


>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
 gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
           DSM 12442]
          Length = 247

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 75  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +A     I TVWG GY   
Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFE 243


>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 227

 Score =  281 bits (720), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+V V   G   +   + +  D ++LD+ L  + G E
Sbjct: 3   RLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR  K S PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRALRQ-KSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G + ++++   V V G  + L  KE++++E+        LT+   ++ 
Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR K+ +  G   ++ TV G GY    
Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGYKFEP 227


>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 227

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 142/228 (62%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   LK E + V     GE+ +   +  E+DAIILD+ L  + GF
Sbjct: 1   MRLLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  K   P+ +L+   +I+DKV+GL  GADDY+ KPF  EEL+ARIR ++RR+ 
Sbjct: 61  EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A +++   +L V+LDAKTV      I L+G+EY ++E L   K   L++E   +H+++
Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E    +IDV+I  LRKK+ + +     I T+ G GYVLR + ++E
Sbjct: 181 YDYEGGTNVIDVYIRYLRKKI-DDSYTPKLIHTIRGLGYVLRVDNENE 227


>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
 gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna ACS-171-V-Col3]
 gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Finegoldia magna BVS033A4]
          Length = 229

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  +    ++ L  E F +   D GE G+EL +  + D  +LD+ L  I GF
Sbjct: 3   IKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    +  + +L+  +   DK+ GL+ GADDY++KPFN  EL+ RI++++RRS 
Sbjct: 63  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 122

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  +  D    +++ ++T    G  I LT  E  +I+LL       +T++  ++  
Sbjct: 123 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKA 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV + +LR K+   +    YI TVWG GY   
Sbjct: 183 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 226


>gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
 gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae
           73]
          Length = 233

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 167/227 (73%), Positives = 195/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L DI G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVEV GH +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGINYIDTVWGRGYVLRDPVEE 227


>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + V+ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 229

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+S  F V+    G+ G+EL    + D ++LDL L  + G +
Sbjct: 5   RLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGMSGLD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V + L+    +  TPV +L+      D++ GL+ GADDY+ KPF+  ELV RI+A+++R 
Sbjct: 65  VCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKRG 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    ++      LS++ +A  VE+ G  + LT  E++++  L   +    T++  L
Sbjct: 125 APFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++    E   + +D  + +LR+K+ + AG   YIET+ G GY  RE
Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGDYAG---YIETIRGVGYRFRE 229


>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 246

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E +N+     G +G+E+ +  E   ++LD+ +  I G  +
Sbjct: 19  ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGIHM 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  +   DK+ GL +GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 79  CMKVREQK-EMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMKM 137

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  GD+ +N+    V V    + LT +E+ ++ELL        + E    
Sbjct: 138 SGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIYE 197

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++ R       + V I K+R+K+   A    YI+TVWG GY + ++
Sbjct: 198 KVWNERSFQSDNTVMVHIRKIREKVEENARKPRYIKTVWGVGYKVEKD 245


>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 237

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +   I   L  E F V +   G++G ++    +FD +ILD+ L ++ G E
Sbjct: 7   KILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R      P+  L+ + S E+   GL SGADDY++KPF   EL+AR+++++RRSR 
Sbjct: 67  ICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRN 126

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +     D+ VN  +KTV   G +I LT  EY+++          +++   L +
Sbjct: 127 FNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLEN 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    +    ++DV++  LRKKL         I TV G GYVL+E+ +D
Sbjct: 187 VWGVNYDIGTNVVDVYVNYLRKKLEKE-NNDRLIHTVIGMGYVLKEDDED 235


>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
 gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
           315-B]
          Length = 233

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 128/232 (55%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D++A+A  I+   + E + V +   G + +   K   +  I+LD+ +  + GF
Sbjct: 3   IKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           + L+ +R +   TPV +L+      DKV GL+ GADDY+ KPF+  EL+AR++A++RR  
Sbjct: 63  DTLKEIRKSH-KTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRFG 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G    +I  G+L ++++   V+  G  I LT +E+++++ LS       ++E  
Sbjct: 122 PPTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREEL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  +++     +++ +DV I +LR+K+ + +    YI T  G GY      K
Sbjct: 182 LEKVWEYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFDGEVK 233


>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 228

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 7   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 67  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224


>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 232

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + L++E + V     G + +++ K  +   IILD+ + ++ G E 
Sbjct: 6   ILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K + P+ +LS      DK+ GL +GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 66  CIKIREHK-NMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTKL 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     +I   DL++N+    V+V    I+LT +E+ ++ELL+  +    + E   
Sbjct: 125 NNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++         + V I K+R+K+   +    YI+TVWG GY + 
Sbjct: 185 ERVWNEEFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGYKIE 231


>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 226

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV   + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLRVRS-NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
           pseudintermedius ED99]
          Length = 241

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E + +     G + +++   Y++  I+LDL L ++ G EV
Sbjct: 6   ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR+   
Sbjct: 66  AVKLRELK-DTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTESS 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L+++ DA  V   G  ++LT KEY+++  L+   N    +E  
Sbjct: 125 KAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +A     I+TVWG GY    +  DET 
Sbjct: 185 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEVSKSDETT 241


>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 132/231 (57%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ ENF +   D GE  +E+    ++D I+LDL L  + G E
Sbjct: 6   RILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V G ++G DDY+ KPF+  E++ R++AI+RRS  
Sbjct: 66  VCQRVREFK-ATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A          S++V  +L+++ DA  V   G  + LT KEY+++  L+L  +   T+E
Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
             L  ++      +++ +D  I +LR+KL+  +    N I TVWG GY L 
Sbjct: 185 ELLKDVWHYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLE 235


>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 237

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++L L+ E +++     G  G+ + +   +DA+ILDL L  I G E
Sbjct: 6   KILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++       +    L+++  A+ V +    I LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWG GY  
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGYKF 231


>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 233

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L+   F V     G   I      E D I+LD+ L D+ GF 
Sbjct: 9   RILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPDMNGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR A  + P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 69  VTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+L+++ D   V V    I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 129 ADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+K+ +A   +  I+T  G GY+L+
Sbjct: 189 YDFNGDAGIVESYISYLRRKV-DAHSSEALIQTKRGFGYMLK 229


>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
 gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+AL+  I ++L+++ F+      G   +E  +    D ++LDL L  I G +
Sbjct: 4   RILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGIDGIK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +  A+   PV +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R +  
Sbjct: 64  VCKLI-SAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           HA   +  G++++++    V      + LT  E+ ++  ++ +     ++E  L  ++  
Sbjct: 123 HAAETLQVGEVTIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQLLEAVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         I+TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGYK 221


>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 227

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++DD+ +   I L L+ E F       G   +   K      IILDL L  I G  
Sbjct: 6   KIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLMLPGIDGMT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+      DKV GL+ GADDYI KPF+ +ELVAR++A++RR   
Sbjct: 66  LCKEVRKF-TDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DLS++L    V+ +G  + LT KE ++   L    N   T++  L +++
Sbjct: 125 EENDGDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+K+ +    K  + TVWG GY   
Sbjct: 185 GYEYMGDSRTVDVHIKRLREKIGDGPNWK--LTTVWGVGYKFE 225


>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 230

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V V + GE G++     EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRSQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
          Length = 226

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++  + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ +
Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 226


>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G ++++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 235

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   + L L+   F V   + G + +E  +    D ++LD+ L  I G+
Sbjct: 1   MRILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V R LR      P+ +L+    + D+V GL++GADDY+ KPF +EEL+ARIRA++RR+ 
Sbjct: 61  AVCRILRRES-DVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTP 119

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     ++ G L +++ A+     G R++LT KE+ ++ LL+      L +   +  
Sbjct: 120 RVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    + +V+ +D  +  LR KL  A   ++ IETV   GY L   
Sbjct: 180 VWGWDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLNPQ 226


>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
 gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + I + LK+E F V     GE+G++L K ++   I+LDL +  + G ++
Sbjct: 6   ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+ +L+  S   DK+ GL  GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREV-AEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLKM 124

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +  GDL +N     V V   R+ LT +E+ ++ELL       ++ E    
Sbjct: 125 SGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++          + V I K+R+++   +    YI+TVWG GY + +
Sbjct: 185 KVWKEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGYKVEK 231


>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
 gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
           DSM 5476]
          Length = 232

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +EL LK+EN+ +Y        +   +    D  ILD+ +  + GF 
Sbjct: 4   KILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMPGMDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  K + PV +L+      DK+ GL  GADDYI+KPF+  E+VAR++A +RR   
Sbjct: 64  LCAKIR-DKYTFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRRYTC 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++I    L ++ D  T  + G ++ LT  E+ ++ LL       ++ E  
Sbjct: 123 YNEGRQKQNSAVIELHGLVIDKDTHTCSLYGKQLPLTPTEFSILWLLCENCGKVISSEQL 182

Query: 175 LNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + ++     E     + V I ++R+K++  A    +I+TVWG GY + +
Sbjct: 183 FHEIWGEKYFESSNNTVMVHIRRIREKMNEPARNPKFIQTVWGVGYKIEK 232


>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  I   L  E + V +   G DG+++ +    D +ILD  L  I G ++
Sbjct: 5   ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVISGLDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR   +  P+ IL+    I D+V GL +GADDY++KPF+ EEL+AR++A +RR+   
Sbjct: 65  CLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTHAQ 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             ++    DL++N  A+ V      I LT KE+ ++E +       LT+E  L  ++   
Sbjct: 125 DLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWGYD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  II+V+I  LR KL  +A  K  I+TV G GYVLR+ A
Sbjct: 185 FMGDSNIIEVYIRALRVKLE-SANPKRLIQTVRGVGYVLRDYA 226


>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
           WAL-14163]
 gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 237

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  I L L  E F   +   GE+ ++L   +E + ++LDL L  I G++
Sbjct: 6   RILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR +    P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCRELRASS-QVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +   DL VNL   +V   GH I +  KE +++  L+   N   T
Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L+H++      + + +DV I +LR+K+ +    K  + TVWG GY   
Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDH--DKWALTTVWGIGYKFE 234


>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 229

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 230

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TV   G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 244

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +   DL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 132 AAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR    +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRAGGAE 244


>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 243

 Score =  281 bits (720), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y+ D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A          +  GDL ++L  + V   G  + L   E+ ++E+        LT+E  
Sbjct: 132 AATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQI 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR    +
Sbjct: 192 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGGAE 243


>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
 gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
 gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
          Length = 280

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  +   L    + V     G + +     +  D ++LDL L  + G E
Sbjct: 54  RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120
           V R LR      PV +L+     +D+V GL+ GADDY++KPF+  ELV R+ +++ R   
Sbjct: 114 VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 172

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A        L+V+  A+     G  + LT +E+ ++            +E  +  ++ 
Sbjct: 173 APAPRPPSAAGLTVDPAARRATKDGTELALTLREFDLLVFFLRHPGRAFAREELMREVWG 232

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                ++  + V + +LR K+ +       I+TVWG GY      ++
Sbjct: 233 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFDPAGRE 278


>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
 gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 225

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae
           ATCC BAA-1498]
          Length = 233

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 165/227 (72%), Positives = 194/227 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK    SIELMLKSENFNVY+TDLGE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTTTKSIELMLKSENFNVYITDLGEEGIDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ KI TPV ILSGM  IEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  EVLRTLRLEKIKTPVLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I+TGDL+VNLDAKTVE+ G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIITGDLTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL   + G NYI+TVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDAVSSGVNYIDTVWGRGYVLRDPVEE 227


>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 229

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +A  + L LK+E + V+     ED +   K    D  +LD+ +  I GFE
Sbjct: 4   RILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMPKINGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV +L+      DK++GL  GADDYI+KPFN  E+VAR++A +RR + 
Sbjct: 64  ICKIIRE-KYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYKK 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +       ++I    L ++ D+    +    ++LT  E+ ++  L   +   +  E    
Sbjct: 123 YNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 183 AVWKEKYFDSNNTVMVHIRRLREKMMEPPRNPKFIKTVWGVGYKIEE 229


>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 225

 Score =  281 bits (720), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 233

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 157/224 (70%), Positives = 191/224 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLSAEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG LSVNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL++A GG+NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAHACGGENYIETVWGRGYVLRDP 224


>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 229

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +   ++  L+ + +       GE+G+       +D IILD+ L  I G E
Sbjct: 4   KILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKINGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    S P+ +L+      DK+ GL+ GADDY++KPFN  EL AR++AI RR   
Sbjct: 64  VCRQVREQS-SVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S       +   +L++N + +TV V G   +LT KE+ ++E+L   +    ++E  L  
Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +++ +DV I +LR+KL         I T WG GY   + 
Sbjct: 183 VWKYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGYYFAQE 229


>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 230

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  ++L  + E + V VT  G  G++     ++D ++LD+ L  I GFE
Sbjct: 5   KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+    ++DKV GL  GADDY++KPF+ EEL AR+RA +R+ + 
Sbjct: 65  VLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H  + ++   D++++L    V   G +I LT KE+ ++E L    N  LT+E  L  ++ 
Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                +  I+DV+I  LR K+ +    +  I T+ G GY L+E+ KDE
Sbjct: 184 YDYYGDTNIVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYTLKED-KDE 229


>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 232

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ LK E ++V     GE+ + + K    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRA-KYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 624

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 1/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  +N+ V +   GE G EL     +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR       + +L+   +  DKV GL +GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++     V      ++LT KE+ +++L         ++   ++ L+ 
Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
              D PE   I   I  LR+KL  A    ++IETV+G GY L+  + +++C   E 
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKALSHEQSCPTDEP 236



 Score = 79.1 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++EDD  +   I+  L++    +   +      +    +  D +ILD  +  I G E
Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  +    S +   +    GADD +SKP     L+A I   + R+
Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACILNRMERN 618

Query: 120 R 120
           +
Sbjct: 619 K 619



 Score = 42.5 bits (100), Expect = 0.052,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 24/130 (18%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I +D+ +   +    +++   V +         +      D ++LDL + +    ++
Sbjct: 355 LLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKL 413

Query: 63  LRALRVAK----------------ISTPVCILSGMSSIEDKVRGLQS-------GADDYI 99
           L  L                       PV + +  ++  D   GL+        G   ++
Sbjct: 414 LIELSQRSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRLRLEVARAGGRAFL 473

Query: 100 SKPFNKEELV 109
            K     E++
Sbjct: 474 QKSMPPNEIL 483


>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
 gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
          Length = 240

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + IE  +  + D I+LD+ +  + GFE
Sbjct: 12  KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  + PV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 72  VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 131

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +   DLS+N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 132 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ N   G +  I T  G GY++R
Sbjct: 192 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 236


>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 229

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 132/230 (57%), Gaps = 6/230 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+I+DD+ +   +   L  E ++VY    G +G+ +    + D IILD+ +  + 
Sbjct: 1   MRSAILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFEV R LR    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR
Sbjct: 61  GFEVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      ++  D+ ++LD++ V   G R+ LT KE++++ L        LT+++ +
Sbjct: 121 KDSGSRSGSQRLIFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIM 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E  +++V+I  LR+K     GGK  I+T+ G GY+LR  A
Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEEH-GGKRVIQTIRGAGYILRGEA 229


>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E    H++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQHVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV+V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
 gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
           tuberculostearicum SK141]
          Length = 232

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   + V   + G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +       +S +   DL ++ D + V   G  I LT  E+ +++LL       L++  
Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++          ++V+I  LRKK +        I TV G GYVLRE+
Sbjct: 181 ILEEVWGYDFPTSGNALEVYIGYLRKK-TEGESDARLIHTVRGVGYVLRES 230


>gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 229

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 129/231 (55%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  +   L+ + + V +   GE  +       +D +ILD+ L    G+
Sbjct: 1   MRILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR A  S P+ +L+   SI+D+V GL SGADDY+ KPF+ +EL+AR+RA+ RRS 
Sbjct: 61  AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+VN  +  VE  G  I LT KEY ++E L L ++  + +E    H+++
Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    +IDV+I +LR KL +  G    I T  G GY+L   AK E  +
Sbjct: 181 ETFDAFTNVIDVYIKRLRAKL-DGPGSPRLIHTRRGEGYIL--TAKPEAGD 228


>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
          Length = 234

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 111/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L+ E F+V     G+   +  K   F+ I+LD+ L  I G +
Sbjct: 12  RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGLD 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L        V ++S   +  D+V GL+ GADDY+ KPF   ELVAR RA++RR + 
Sbjct: 72  LCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQA 131

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   +LS+      V + G  + L+ KE++++EL         ++E  +  ++
Sbjct: 132 SDQQPSELKADNLSLFPAECRVCLDGLELKLSPKEFKLLELFMQNPKRVWSREQLIEQVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + K +DV I  LR+K+       + + TV G GY  
Sbjct: 192 GFDYIGDNKTVDVHIRWLREKIEEDPSNPSKLVTVRGFGYRF 233


>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D ++    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 72  AARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 131

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DL ++L  + V   G  + LT  E+ ++E+        LT+E
Sbjct: 132 AAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 192 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 245


>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L +E + V+      D +E  K    D  +LD+ + +I GFE
Sbjct: 4   KILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEISGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   PV +L+      DK++GL  GADDYI+KPFN  ELVAR++A +RR + 
Sbjct: 64  ICKIIRE-KYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  S      I    L ++ D+    +    ++LT  E+ ++  L   K   +T E    
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 183 AVWKEKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+  L  E ++V     GE+G+EL     +D +ILD+ +  I G+ 
Sbjct: 3   KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R      P+ +L+  +   D++ G +   D+Y+ KPFN + LVA+++A++RR  +
Sbjct: 63  VCRKIREES-QVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL ++   + V++    + LT KEY ++      K   L++E  LN ++ 
Sbjct: 122 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +      +I+TV G GY    +
Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 220


>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 238

 Score =  280 bits (719), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ EN+ +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TPV +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGIREKK-ATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  +   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGYKFE 234


>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 228

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK + + I + L++E  +    +   + ++L +  EFD IILD+ + ++ G E 
Sbjct: 5   ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR +  
Sbjct: 65  CMKIREER-NLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKY 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  GDL+VN D + V V+G  + LT KE+ ++ELLS  K   ++ E    
Sbjct: 124 NTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 184 AVWKEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGYKI 228


>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 225

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ +   +   L  E F V     GE+G+ L   ++ D ++LD+ +    G+E
Sbjct: 4   KILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+    + D+V+GL  GADDY+ KPF  EEL+ARIRA++RRSR 
Sbjct: 64  VCRRLRA-GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  +V  DL+++   + V   G  I LT +E++++ L        LT++  ++ ++
Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  +++V++  LR+KL    G K  I TV G GYVL+E
Sbjct: 183 GIDYGGESNVLEVYVGMLRQKLEE-GGEKRIIHTVRGVGYVLKE 225


>gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 242

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+  LA  I L L+S    V   +      +  +   FD ++LD  L+D  G  
Sbjct: 15  RILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGLT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    S P  +++   S  D V GL+SGADDY+ KPF+  EL AR++A++RRS  
Sbjct: 75  LCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSAQ 134

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     +   +L ++   + V      + LT +E+ ++  L+       ++   L  ++
Sbjct: 135 QAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     ++  I +LR KL+        ++TVWG GY     A
Sbjct: 195 GYSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKFAPPA 240


>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 233

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L+ +D+  +A  IEL L  E +       G++ +++ +    D  ILD+ +  I
Sbjct: 1   MKPITVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  ++  DK+ GL  GADDY++KPFN  ELVAR+ A +R
Sbjct: 61  DGYEVTRQIREKH-HLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLR 119

Query: 118 R--------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R        +    + ++  G L ++ + +TV + G  + LT KE+ ++ LL+       
Sbjct: 120 RFIQLNPSVAGPTDEPVLEAGGLVIHPEHRTVFLYGEPVELTPKEFDILVLLANHPKKVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 SSEHIFEKVWGEAYYEGGNTVMVHIRSLRKKLGEDRHKNKLIKTVWGVGYTF 231


>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 224

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 122/222 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   L+ +++ V +   GE G +  + + +  I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + LR +   TPV +L+   +  DKV GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    LS++ +   V      +HLT KEY ++ELL        ++   L  L+ 
Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P  + + V I  LRKKL  A    + I+TV+G GY L+
Sbjct: 181 WDDPPGEEAVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRLK 222


>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L++ED+ ++   + + L  + F V     GE+ +++    +   ++LDL L  I GF
Sbjct: 5   IKVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPGIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R +  +  + +L+  S   DK+ GL+ GADDY+ KPFN  EL+ARIRA +R+  
Sbjct: 65  EVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKID 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++G    +I   +  ++LDA+    +G  I LT  E+ M+++     N   +++  LN 
Sbjct: 125 NAKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNI 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      ++K +DV + ++R+K+ +       IETVWG GY L+
Sbjct: 185 VWGKNYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRLK 229


>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V     G+D ++       DA++LDL +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAV 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++   DL+++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 241

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  +L     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
 gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 125/229 (54%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GED +     Y  + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R ++ +TP+ +LS    + DKV GL+ GADDYI KPF+ +EL+AR++A++RR + 
Sbjct: 66  VCRDIR-SRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +    +++NL   +V V   ++ +  KE +++  L+   N   T+E 
Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV I ++R+K+ N       + TVWG GY   
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRIREKIKNHDTWG--LATVWGIGYKFE 231


>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 242

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                       +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTEE 242


>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 239

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   +   L+   F V     G + ++L + +  D ++LD+ L D+ GF 
Sbjct: 11  RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR    + PV  L+      DKV GL  G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 71  VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGG 130

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +V  DL +  D+  V   G  + L+  E++++  L L  N  L+K   L+H+
Sbjct: 131 VDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     E  I++ +I  LR+KL         I T  G GYVLR
Sbjct: 191 WDYDFNGEAGIVESYISYLRRKLDTEGLEP-LIHTKRGVGYVLR 233


>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 277

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 44  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 104 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 163

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    L+++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 164 LARDSRIDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 223

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 224 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 277


>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
 gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
           B1551]
          Length = 238

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  +   +++ L+ E + +     G + IE     ++D I+LDL +  I G E
Sbjct: 6   RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++LIV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFE 234


>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
 gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   +   L+ ++  V     GE+ +E+ K  E+D I+LD+ L    GFE
Sbjct: 4   KVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RR   
Sbjct: 64  VCRQIRDFS-DVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAK 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  ++V GDL ++ +++ V      ++LT KE+ ++ELL++  N   ++E  LN
Sbjct: 123 KDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+        Y+ T WG GY  R
Sbjct: 183 IVWGYEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYFR 228


>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 226

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 127/232 (54%), Gaps = 8/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+  L   I L L+ + + V     G   +E      FD I+LDL L +  GF
Sbjct: 1   MRVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV +L+    ++ +V+GL  GADDY+ KPF+  EL+ARIRA++RRS 
Sbjct: 61  TVLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++ ++ + + V +    + LT KE+ ++E L   +N  +++     H++ 
Sbjct: 121 EQISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWG 180

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +P      IDV I  +RKKL++  G    I TV G GY+    AKDE  
Sbjct: 181 DAFDPFTMSNNIDVHIKNVRKKLNDQGG--RIIVTVRGVGYM----AKDEQA 226


>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
 gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
          Length = 234

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + IE  +  + D I+LD+ +  + GFE
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPGMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  + PV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 66  VTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSRN 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +   DLS+N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 126 AQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ N   G +  I T  G GY++R
Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMIR 230


>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 229

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 244

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 72  AARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 131

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++   DL ++L  + V     ++ LT  E+ ++E+        LT+E 
Sbjct: 132 AAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR+   +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRQGGAE 244


>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 225

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
 gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           BDRD-ST196]
 gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides DSM 2048]
          Length = 239

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 13  HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 73  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK     
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 192 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 237


>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
 gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
 gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
 gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
 gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
 gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
 gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
 gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
 gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
 gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
 gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
 gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
 gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
           subsp. aureus MW2]
 gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
 gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
 gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
 gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
           A9719]
 gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
           A9635]
 gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
 gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
           A8115]
 gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
           A6300]
 gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
           A6224]
 gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
 gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
           A5937]
 gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
 gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
 gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
 gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
 gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
 gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
 gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
 gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
 gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
           subsp. aureus ST398]
 gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
 gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
 gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
 gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
 gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
 gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
 gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
 gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
 gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
 gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
 gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
 gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
 gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
 gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
 gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
          Length = 219

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle
           transcriptional regulator CtrA [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell
           cycle transcriptional regulator CtrA [Rhodospirillum
           rubrum ATCC 11170]
          Length = 239

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 142/224 (63%), Positives = 181/224 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD A A SI+L+LK E + V  TD GEDG+E+ K Y++D +I+DL L D+ G 
Sbjct: 1   MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIVDLMLPDMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR ++I+TPV ILSG++  + KV+GL  GADDY++KPF+K EL+AR++AIVRRS 
Sbjct: 61  EVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRSM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS++  G + VNLDA+TV V G  +HLTGKEY ++ELL+LRK +TLTKE FLNHLY 
Sbjct: 121 GHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAQATGGTNYIETVWGRGYVLRDP 224


>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 227

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL+  +  +L  E F   V D G D + +      D ++LD+ L  + G E
Sbjct: 3   KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++  G + +++D   V V G  I +  KE++++E+L       +T+   +  
Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV I +LR K+   +    Y+ TV G GY   
Sbjct: 182 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 226


>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 248

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 118/234 (50%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +    +  L+ E + VY    G +G +L   ++ D I+LDL +    G+E
Sbjct: 12  RILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKDGWE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I++R   
Sbjct: 72  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V  +++ LT KE++++ +++       ++   
Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D   +     + V + +LR+KL        +I TVWG GY    N  +E
Sbjct: 191 LELIWDFEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPNGGNE 244


>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
 gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 237

 Score =  280 bits (719), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +    +  L+ E + VY    G++G EL   ++ D IILDL +    G+E
Sbjct: 4   RILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKNGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  K + P+ +L+      +++ GL  GADDY++KPF+  ELV RI+ I RR   
Sbjct: 64  LCEEIRQ-KSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     LI   DL +    + V V    + LT KE++++ L++       ++   
Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++    E     + V + +LR+KL        +I T+WG GY    N ++ET
Sbjct: 183 LELIWGFEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPNERNET 237


>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
 gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 235

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ + + I   LK E +N+     GED I       F  +ILDL L  I G E
Sbjct: 10  RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R +  + P+ ILS      D++ GL  GADDYI KPF+  EL AR+++ +RR   
Sbjct: 70  VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++   DL +N     V  +   ++LT KE+Q+++L     +   TK    N
Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++ +   +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 189 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 235


>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
 gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST26]
          Length = 232

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 242

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 126/239 (52%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  + Y  D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +R    
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122

Query: 118 ----------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                     + +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  +
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTE 241


>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 235

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+D+ ++   +   LK+E +       G  G+ + + ++ D IILD+ L  + G E
Sbjct: 13  KILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLPGMDGIE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR    +  V +L+  S   DK+ GL  GADDY++KPF+  EL+ARI+A +RR   
Sbjct: 73  LLAHLRRES-NVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRRLNP 131

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     +++    + ++  A+ V V    I LT  E+ ++  L+      L++E  L 
Sbjct: 132 PPAATSETAMLNFAHVRIDPSARRVWVNNTLIDLTTVEFDLLLTLAQHHGRVLSREQLLE 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + +++DV I  +R+KL N      +IETV G GY   +N
Sbjct: 192 KVWGYDYYGDTRVVDVHIGHIRQKLGNNT----WIETVRGVGYRFEDN 235


>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 241

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +A  +   L    + V + + G   + L      D IILD  L  + G E
Sbjct: 16  KILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDGAE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +S P+ +L+ + + +D++ GL+ GADDY++KP +  ELV R+ +++RRS  
Sbjct: 76  VCRRIRQT-MSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVK 134

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++      +N  ++ V + G  + LT +E+ ++     R N   ++E  +  ++
Sbjct: 135 EFTPEPVVELAGFVLNPASRVVSLNGVDLALTAREFDLLAFFLRRPNQVFSREDLIRAVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++  + V + +LR+K+         + TV G GY  
Sbjct: 195 GWDF-GDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRF 235


>gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
 gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2]
          Length = 237

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 154/233 (66%), Positives = 187/233 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TD+GE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYATDMGEEGIDLAKLYDYDLILLDINLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIDTPILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLR+       E +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATMGENYIETVWGRGYVLRDPEPSTAHEPI 233


>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 240

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   +   +   +DA+ILDL L  + G E
Sbjct: 6   KILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQEA 125

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++ +         L ++  A+ V + G  I LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + ++  + E     ++  I +LR K+         I TVWG+GY    N  +
Sbjct: 186 DRVWGYQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATNKPE 237


>gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum
           SL003B-26A1]
 gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum
           SL003B-26A1]
          Length = 228

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 171/221 (77%), Positives = 193/221 (87%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LLIEDD A A SIELMLKSENFNVY TDLGE+GI+L K Y++D I+LDL L D+ G+EVL
Sbjct: 2   LLIEDDSATAQSIELMLKSENFNVYTTDLGEEGIDLGKLYDYDIIMLDLNLPDMSGYEVL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LRV+K+ TP+ ILSG++ IEDKVRGL  GADDY++KPF+K+ELVARI AIVRRS+GHA
Sbjct: 62  RTLRVSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSKGHA 121

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           QS+IVTGDL VNLD KTVEV G R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G D
Sbjct: 122 QSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMD 181

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           EPE+KIIDVFICKLRKKL+ A  GKNYIETVWGRGYVLRE 
Sbjct: 182 EPELKIIDVFICKLRKKLAAATSGKNYIETVWGRGYVLREP 222


>gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 225

 Score =  280 bits (719), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL +ED+  +A  +   LK + F V   D G++G       E+D ++LD+ L    G 
Sbjct: 1   MNILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR +  + PV +L+  + ++D++ GL  GADDY++KPF  EEL+ARI A++RR  
Sbjct: 61  AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+++  G L ++   + V      + LT +E+ ++E L       LT+   L H++ 
Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               P   ++DV I ++RKKL    GG + IE+V G GY  R+ 
Sbjct: 181 YDFNPTTNLVDVCIQRIRKKLER-MGGASCIESVRGVGYCFRKP 223


>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
 gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 226

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  I +ML+SE++   +   G   ++       D ++LDL L  + G E
Sbjct: 4   RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR+  
Sbjct: 64  ICRLIRSES-DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ ++  
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 183 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 1329

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 128/227 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +A ++   L  +N+ V V + G+   +L + YE+D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +    P+ +L+G  S  DK  GL +GADDY+ KP ++EELVAR+RA++RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q ++  G L ++  +  V  Q  ++ LT KEY ++ELL        +  M L+HL+ 
Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             D P    +   I  LR KL  A    + +ETV+G GY L+    D
Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227



 Score =  104 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DD      ++++L      +   +  E      +    D +ILD+ +  + G 
Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441

Query: 61  EVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ + +R        P+  L+  S+ E   +    GADD++SKP    ELV RI   + R
Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501

Query: 119 SR 120
            R
Sbjct: 502 VR 503



 Score = 71.0 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD      ++ +L    + V   D G+  I        D I+LDL +  + G+E 
Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135

Query: 63   LRALRVAKI--STPVCILS 79
            +  L+        P+ I S
Sbjct: 1136 MAGLKKCSDTKDIPIVICS 1154



 Score = 54.9 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 2    RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +IL+IEDD  LA  +  +    +   ++   G + I L +    D +ILDL L +  GF 
Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264

Query: 62   VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118
            V+  L+      S PV + S     + +   L+ G  ++ +K     +E   R+  +++R
Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324


>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
 gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock4-2]
          Length = 230

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F       G   +      + D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S   D V+GL+SGADDYI KPFN +ELVARIR  +R +  
Sbjct: 64  VCDLIRAESG-VPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  L+  GDL V+++   V     RI+LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + + + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 QYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 240

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQVREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 228

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I++ L++  +NV V   G+   E    +  + ++LD+ L  I G E
Sbjct: 7   KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + PV +L+      DKV  L+ GADDY+ KPF  +EL+AR++A++RR  G
Sbjct: 67  VLKWIRKDS-NVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L+++ ++  V   G  +    KE++++  L+  KN   T++  L  ++
Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL    G    +ETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHIKRLREKL--NGGEDWQLETVWGVGYKFE 226


>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 240

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F+V   D GE  + L + Y  D ++LD+ L D+ GFE
Sbjct: 12  RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R LR       V  L+    + DKV GL  G DDY++KPF+ EE+VARIRA++RR  S
Sbjct: 72  VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTGS 131

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL +N D+  V   G  + L+  E++++  L L  N  ++K   L+H++
Sbjct: 132 TVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D     E  I++ +I  LR+K+   A G   I T  G GYVLR   +  T 
Sbjct: 192 DYDFRGESGIVESYISYLRRKI--DADGPPLIHTKRGVGYVLRVPPESPTT 240


>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  +FD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 69  VCMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +S++  GDL+VN D + V V+G  + LT KE+ +++LL+  K   L+     
Sbjct: 128 YNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 228

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++AL+  +  +L  E F   V D G D + +      D ++LD+ L  + G E
Sbjct: 4   KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 64  VCRKLREVS-SVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++  G + +++D   V V G  I +  KE++++E+L       +T+   +  
Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV I +LR K+   +    Y+ TV G GY   
Sbjct: 183 VWGADYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 227


>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 325

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   + +   ++ DA++LD+ L D+ G  
Sbjct: 84  RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGLA 143

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  +   PV  L+   ++ED+V GL +G DDY++KPF+ EEL AR+R ++RR  G
Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVHG 203

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++++  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 204 TVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 263

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  ++++++  LRKK+   AG +  I T+ G GYVLR 
Sbjct: 264 WNYDFGGQANVVELYVSYLRKKI--DAGRQPMIHTMRGAGYVLRP 306


>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 231

 Score =  280 bits (718), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D  G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDASGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++ A    YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGYKIEK 231


>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DDK +   + L L+ + + V +   GE+ +      + D I+LD+ L  I G++
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++      DKV GL+ GADDYI KPF+ +E++ARI+A+ RR   
Sbjct: 65  VCREIR-KKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +    LSVN+    + V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + IDV + +LR+KL      K  ++TVWG GY   
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFE 227


>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
 gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH603]
          Length = 239

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 13  HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 73  VVRIIRE-KSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK     
Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 192 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 237


>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
 gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
          Length = 252

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G     L      D I+LD+ L D+ GF 
Sbjct: 29  RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+  
Sbjct: 89  VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMD 148

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                I    DL ++ DA  V   G  + L+  E++++  L + +   ++K   L+H+++
Sbjct: 149 SVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++ +I  LR+KL+     K+ I T  G GY+LR
Sbjct: 209 YDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYMLR 250


>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
 gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Staphylococcus capitis SK14]
 gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Staphylococcus caprae C87]
          Length = 236

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ ++  +  + + I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +++R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  I+   + +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VNEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
 gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Streptococcus parauberis NCFD 2020]
          Length = 236

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 123/234 (52%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K ++  I+  L  E ++      G + +   +  + D +ILDL L ++ G E
Sbjct: 3   KVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLMLPELDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +LS   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR+  
Sbjct: 63  VAKEIRKTS-HIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  G+L +  DA   +  G+ + LT +E++++  L+      +T
Sbjct: 122 IETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVMT 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E  L  ++      +V+ +DV + +LR+K+ +      YI T  G GY ++ +
Sbjct: 182 REHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKAH 235


>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 224

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 137/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L + I   LK  NF+V     GE+ +E   + ++D IILD+ +  + G+
Sbjct: 1   MKILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR  K  T V +L+    I++K++GL  GADDY+ KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  + +   DL V++  K+V   G  I LTGKEY+++E L   K   L+++   + ++D
Sbjct: 121 GNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV I  +RKK+ +    K  I T  G GYVL+E+
Sbjct: 181 YAYEGESNIIDVLIKNIRKKI-DIGDSKPIIHTKRGLGYVLKED 223


>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 239

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  I +ML+SE++   +   G   ++       D ++LDL L  + G E
Sbjct: 17  RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLDGVE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR+  
Sbjct: 77  ICRLIRSES-DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ ++  
Sbjct: 136 GAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWGY 195

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 196 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 239


>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 218

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 229

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L     +V      E  + L K    D ++LD  L    G ++
Sbjct: 5   ILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGSGIDI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL++GADDYI+KPF+  EL+ARI+A++RR  
Sbjct: 65  AKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L ++     V   G+ I L   E++++           ++   L+ ++
Sbjct: 125 PQMTDDAVEVKGLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L  A G    I+TV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRSSLE-ATGHDGLIQTVRGTGYRF 225


>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 236

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ AL   + L L+ E F+V     G   + + +  + D +ILDL + ++ G+E 
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMGGYEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LRA    +  TPV +L+      DK+ GL+ GADDY++KPFN  EL+ARIRA++RR++  
Sbjct: 64  LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQA 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   D+ ++   +TV V G  I LT  E+ ++  L        ++   L+ +  
Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + IDV I  LR K+ +      YIETV+G GY  
Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRF 223


>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 260

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260


>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 225

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 119/225 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   L  +++ V V   G+ G EL + + +D I+LD+ L  + G 
Sbjct: 1   MRILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   +I DK+ GL +GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++     V  +   + L+ KEY ++E          ++   L +L+ 
Sbjct: 121 TTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               PE   +   I  LR+KL  A    + IETV+G GY L+E  
Sbjct: 181 FERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRLKEKP 225


>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 260

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 38  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 98  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 218 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 260


>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
 gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Rothia mucilaginosa ATCC 25296]
 gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 234

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +E       D I+LD+ +  + GFE
Sbjct: 6   KLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPGMDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +TPV  L+   + EDKV GL +G DDY++KPF+ +E++ARIRAI+RRSR 
Sbjct: 66  VTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSRS 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +    L++N+D   V +    I L+  E+ ++  L L  N  L+K   L+H+
Sbjct: 126 VQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ N     +  I T  G GY++R
Sbjct: 186 WEYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMIR 230


>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 252

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L+ E ++V     G   ++  +  E D ++LD+ L D  G E
Sbjct: 22  RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  + S PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS  
Sbjct: 82  VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 141

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           HA+     +  GDL ++ D+  V      IHLT  E++++  L       L+K   L+ +
Sbjct: 142 HAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LR+K+    G +  I T+ G GYVL+ 
Sbjct: 202 WNYDFGGQDNIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKP 244


>gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 231

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 159/230 (69%), Positives = 188/230 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD   A SIELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDDPTTAKSIELMLGAEGFNVYTTDLGEEGLDLGKLYDYDIIALDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+  ++ KVR L  GADDY++KPF++EELVARI AIVRRS+
Sbjct: 61  DVLKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV G R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+  + +  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACSGDNYIETVWGRGYVLRDPEEGQVA 230


>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 226

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+  V + G + +   +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR ++ S P+ +L+   +  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLR-SRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGD 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S +  G + ++++   V V G  + L  KE+ ++ELL       LT+   ++ +
Sbjct: 122 VEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        Y+ TV G GY L 
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKLE 225


>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  ++L L  E + V V + G  G+   +  E D ++LD  +  + G E
Sbjct: 7   RILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMPGLTGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+    IED+V GL +GADDY+ KPF+ EEL+AR+RA +RR++ 
Sbjct: 67  VCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQP 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 +  DLS+N   + V      I LT KE+ +++ L       LT++  L  ++  
Sbjct: 127 EDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  II+V+I  LR KL  A      I+TV G GYV+R
Sbjct: 187 DFMGDSNIIEVYIRYLRLKLE-AENESRLIQTVRGVGYVMR 226


>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
           19977]
 gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
          Length = 228

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +L+ E F   + + G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRA-KSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++     ++  G + +++D  TV V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 233

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD+ +   I   L  E +    T  G   +E  +  EF  +ILD+ L  + G+
Sbjct: 5   IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVL+ +R    +TPV ILS      DK+ GL  GADDY++KPF   EL AR++A +RR  
Sbjct: 65  EVLQKIREKG-NTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYL 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   ++ +N+D   V+V  + + LT KE+++++L         TK   
Sbjct: 124 NFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++      +   + V I +LR+K+       +YI+T+WG GY L E 
Sbjct: 184 FKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233


>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 224

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIP 58
           M+IL+IED+K L  +++  L+ E + V +   GE+   + +  F  +D +ILD+ L  I 
Sbjct: 1   MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + LR      P+ +L+    +EDK+ GL+SGADDY+ KPF+ EEL+ARIRA++RR
Sbjct: 61  GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +++   D+S++  +K V      I LT KE+ ++E L    N  ++KE  ++H+
Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +    +++  I  LRKKL      +N IET+ G GY ++E
Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERK-RDENIIETIRGMGYRIKE 224


>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 228

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++ + ++  ML+ E F V+    G +G+EL +    D ++LDL L  + G +
Sbjct: 4   QLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLSGTD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR  G
Sbjct: 64  VCRRLRERS-NVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++  G + +++D   V V+G  +HL  +E++++E+L       LT++  ++ 
Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ G    + K +DV + +LR ++ +      ++ TV G GY    
Sbjct: 183 IWGGDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGYKFEP 228


>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 236

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++++   ++  L++  + V V   GE+ ++  +  + + I+LD+ L    G E
Sbjct: 4   KVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVMLPKKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +++R  K   P+ +L+      D+V GL+ GADDY++KPF+  E+VAR++AI+RRS+ 
Sbjct: 64  VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  I+   + +  +   V      + LT KE++++  L  R+   +T+E 
Sbjct: 124 VSEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +++     + +I+DV I  LR KL         I+TV G GY L 
Sbjct: 184 MLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232


>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 229

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 131/228 (57%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  ++L  + E + V +   G  G++     ++D ++LD+ L  + G+E
Sbjct: 4   KILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMDGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VL+ +R      PV +L+    ++DKVRGL  GADDY++KPF+ EEL AR+RA +R R+ 
Sbjct: 64  VLKKIRE-NSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++L    V  QG +I LT KE+ ++E L    N  L++E  L  ++ 
Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                +  ++DV+I  LR K+ +    +  I T+ G GY LR + +DE
Sbjct: 183 YDYYGDTNVVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYSLR-DGEDE 228


>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ +++     +D ++LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQHIREFS-NMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAA 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  GDL ++ +++ + + G  ++LT KE+ ++ELL    N    +E  LN
Sbjct: 123 SQPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++      +V+ +DV + +LR+K+ +      Y+   WG GY
Sbjct: 183 LVWGYEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGY 225


>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V   +I LT KE+ ++ LL+       +
Sbjct: 120 RFLTLNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWAEGYYESGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +E+ +  + D ++LDL L  + G E
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCRQIRAESDS-PIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++    V     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 KAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 221


>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E F ++    G++ +++ +  + D +I+D+ + ++ G+E
Sbjct: 5   RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+       KV+G + GADDY+ KPF+  ELVAR++A+++R R 
Sbjct: 65  LCRELR-DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS+N       +    I L  KE++++  L+     T T++  +  ++  
Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + + + +DV I +LR++ +        I T+ G GY L   +
Sbjct: 184 DYDGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLEAQS 226


>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 231

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLN 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
           A3(2)]
 gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 248

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 16  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R A   TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 76  AARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +   DL+++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 196 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 248


>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 267

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 45  RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 104

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 225 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 267


>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
 gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
          Length = 232

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++A+A  +E+ LKSEN+NV     G+D ++  +  + D  ILD+ L DI GF
Sbjct: 3   INILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR  
Sbjct: 63  DICQKIRENH-HFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVT 121

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + Q       ++I+ G L V+ +     +    + LT  E+ ++ +L   +   +  E 
Sbjct: 122 KYNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEK 181

Query: 174 FLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++  +        I V I  LR K++++A    YI+TVWG GY + 
Sbjct: 182 LFEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGYKIE 231


>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 236

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + ++  + ++ D  +LD+ L D+ GF 
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     EDK+ GL  G DDY++KPF+ +E+VARIRA++RR+  
Sbjct: 69  VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL ++ DA  V   G  + L+  E++++  L +  N  L+K   L+H+
Sbjct: 129 LDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  I++ +I  LR+K+ +  G +  I T  G GY+LR
Sbjct: 189 WEYDFNGDASIVESYISYLRRKI-DVGGHEKMIHTKRGVGYMLR 231


>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 242

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/234 (36%), Positives = 133/234 (56%), Gaps = 9/234 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSEN-FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+  I++IEDD  +A SI   L+ E  F+V +T  GE G+     +  + I+LD+ L  +
Sbjct: 1   MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60

Query: 58  PGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            GFE+ R LR  + +   P+ +L+  +   DK+ GL  GADDYI+KPF+  EL+ARI A+
Sbjct: 61  NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +RR+ G   S+   G L ++ +   V  QG  I+LT KE+ +++LL+  K   LT+E  L
Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + ++    + E + +DV I ++R+KL        YIET  G GY   E  K  T
Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVEAGKQAT 230


>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 233

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+ED+  +    ++ L  E F +   + GE G+EL +  + D  +LD+ L  I GF
Sbjct: 7   IKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGIDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    +  + +L+  +   DK+ GL+ GADDY++KPFN  EL+ RI++++RRS 
Sbjct: 67  EVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSP 126

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  +  D    +++ ++T    G  I LT  E  +I+LL       +T++  ++  
Sbjct: 127 QKQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKA 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV + +LR K+   +    YI TVWG GY   
Sbjct: 187 WGEDFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 230


>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
 gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Western North America USA6153]
 gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
           B]
 gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Vollum]
 gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Australia 94]
 gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
 gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
 gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
 gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
 gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
 gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
 gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
 gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
 gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
 gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 250

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 18  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 78  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 197 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 246


>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
 gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   +   LK+E+++V     G++ ++  +   +DA++LD+ +  + G 
Sbjct: 1   MRILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R     TPV +L+   S+ED+VRGL +GA+DY+ KPF  EEL+ARIR ++R+ +
Sbjct: 61  SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q++    DL V+LD   V   GH I L+GKE+ ++  L       L+++    HL++
Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +IDV+I  LRKK+ +       I TV G GYV+R   
Sbjct: 181 YDYAGGSNVIDVYIRYLRKKI-DEGSQTKLIHTVRGAGYVMRAEP 224


>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
 gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinPhoP [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +++  ++  L+   + V V   G+   EL     FDAI+LDL L  + G  
Sbjct: 3   KILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R  KISTPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQV 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I   +L ++ + K V      + LT +EY+++   S R    + +E  L 
Sbjct: 123 DHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E +++D+ I  LR+K+         ++TV G GY + 
Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGYTMV 228


>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 229

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F V V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR  G 
Sbjct: 64  CKQLRTRSG-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G + +++D  TV V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKLE 228


>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 242

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 125/238 (52%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   +E  LK  +F+V     G D + + +   +D ++LDL L ++ G E
Sbjct: 3   KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R+ +  TPV +L+   +  DKV GL+ GADDY+ KPF+  E++ARI A++RR   
Sbjct: 63  VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122

Query: 122 HAQSLIV------------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
              S               TG  +++     V V    + LT KE+++++ L   +N  L
Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++  L  ++      + +++D+ I  LR+K+        Y++T+ G GY       D
Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFSTGGDD 240


>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
           HI4320]
 gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis HI4320]
          Length = 229

 Score =  280 bits (718), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   I  +L+   F     +  +  +        D ++LD  +    G +
Sbjct: 4   RILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQ 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        P+ +L+     EDKV+GL++GADDY+ KPF+ +ELVAR++AI+RR 
Sbjct: 64  VIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRL 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ +I    LS++  +  V  Q   I +   E++++           ++E  LN++
Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEQD-GHDRMIQTVRGTGYRF 225


>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 235

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 131/233 (56%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ +L H I+  L+ +++ VY TD G+  + L +  + D IILDL L D+ G +
Sbjct: 5   KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+  S  +D V GL  GADDY+ KPF+  EL+AR+ +++RRS+ 
Sbjct: 65  VCKTIR-KKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123

Query: 122 ----HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +  I  G   LS++ +   V V+G  + LT  E++++E L+       ++   +
Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N +     E   + IDV I  +R+K+ +     ++I TV+G GY  +E   DE
Sbjct: 184 NLIQGDDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKFQE-VPDE 235


>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R  K   P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRA-KYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R           ++S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFFTLNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
 gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE  +     Y+ + I+LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             ++          +    + +NL   +V V G  + +  KE +++  L+   N   T+E
Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++      + + +DV I +LR+K+ + +     + TVWG GY   
Sbjct: 185 QLLDQIWGYEYIGDTRTVDVHIKRLREKIKDHSTWG--LSTVWGIGYKFE 232


>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ + + I   LK E +N+     GED I       F  +ILDL L  I G E
Sbjct: 5   RILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R +  + P+ ILS      D++ GL  GADDYI KPF+  EL AR+++ +RR   
Sbjct: 65  VLRKIRESS-TVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++   DL +N     V  +   ++LT KE+Q+++L     +   TK    N
Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++ +   +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 184 NVWENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKLGE 230


>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD ++   +E  L  E F V     GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR +A +RR   
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFTK 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + +I  GDL ++    TV  +  ++ LT KE+++++L +  +N   TK    N
Sbjct: 123 YSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIYN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+        YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKLE 228


>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++A+   ++  L+   ++V +   G   ++L +  ++DA++LDL L ++ G  
Sbjct: 3   RILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVDGMS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R   I  PV +++      D++ GL+ GADDYI+KPF+  E++AR++A++RR   
Sbjct: 63  VLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYHE 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + +       +   DL ++   K V+  G  + LT +EY+++   + R    + +E  L
Sbjct: 123 QSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      + +++D+ I  LR+K+         ++TV G GY + +
Sbjct: 183 TSVWGYDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGYTMSD 230


>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 226

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  I +ML+SE++   +   G   ++       D ++LDL L  + G E
Sbjct: 4   RILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +  +D V GL++GADDY++KPF  +EL+AR+   +RR+  
Sbjct: 64  ICRLIRSES-DVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++    V+     I LT  E++++  L+       T+E  L+ ++  
Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   + ++++V + +LR K+       + + TV G GY + E+A
Sbjct: 183 QHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYRVGESA 226


>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 231

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQLRARS-SAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + K +DV + +LR K+        Y+ TV G GY      
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFEPRV 228


>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 228

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   +   L    + V     G++G+++      D +ILD  + D+ G EV
Sbjct: 6   ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A  + P+ +L+    + D+V+GL++GADDY+ KPF  EEL+AR++A++RR+   
Sbjct: 66  CKRLRSA-DNIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRASPD 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           ++ ++   DLSV+L  + V+     I LT KE+ ++          LT++  L  ++   
Sbjct: 125 SRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWGFD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            E E  ++ V++  LR KL  A G    I T+ G GYVLRE+
Sbjct: 185 MEVESHVVAVYVGYLRDKLE-AGGESRLIHTLRGVGYVLRES 225


>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1293]
 gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
 gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
          Length = 223

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
 gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
           F0211]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + +E+ +    D +ILDL L ++ G E
Sbjct: 3   KILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++AI+RR+  
Sbjct: 63  VARTIRKTS-NVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        IV GDL +  DA  V+  G  + LT +E++++  L+      +T+E 
Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 LLETVWGYDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232


>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 235

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L +E F V+    G   + L +  + D +ILD+ L  + G EV
Sbjct: 6   ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R L     +  V +L+  +   DK+ GL  GADDY++KPF+  ELVAR++AI+RR+R  
Sbjct: 66  CRQLHRE-TTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRAA 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H + ++    L ++ + + VE  G R+ LT +E+ ++  L+       T+E  L 
Sbjct: 125 RVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        +++DV I  LR+KL +   G   ++TV G GY   
Sbjct: 185 RVWGPDFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGYKFV 230


>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  I+L L+ E +   +   G +G+   + +++D ++LD+ L ++ G E
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R     TPV +L+   ++ DKV GL  GA+DYI+KPF  EEL ARIR  +R    
Sbjct: 65  VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +      + +  G+L VN   + V  +   I LT KEY ++  +   KN  L+ E  L 
Sbjct: 125 TSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++      +  I+ V+I  LRKK+ +A     YI+TV G GY+L+E
Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKI-DAPFSTPYIQTVRGVGYMLKE 230


>gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17]
 gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A+A  + + +        + + G+DG+   +    D ++LDL L  + G  V
Sbjct: 5   VLIIEDNPAIAELVSMQVSDLGMAPVLANRGDDGLARFRQGGIDLVVLDLMLPGLDGLAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A    PV +L+  S+  D+V GL+ GADDY++KPF+  EL ARI+A+ RR    
Sbjct: 65  CREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGARIKALFRRVDAL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I    L ++   + V V    + LT +E+ ++   +  +    ++   
Sbjct: 125 SARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFASHRGRVFSRAQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++    +     ++  I +LR K+        Y++TVWG GY  ++
Sbjct: 185 LDAVWGYNHQGYEHTVNTHINRLRNKIETDPAEPRYVQTVWGVGYRFQD 233


>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 218

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ +   +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ VE  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT]
 gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT]
          Length = 231

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 134/226 (59%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ +NF V     GEDG++         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPIVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR    S  + +L+ +    DK++GL++GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +   +V+G+  VNL++K        ++LT KE+ ++++      T+L+++  L+  
Sbjct: 126 SNNTSSDTLVSGEFKVNLNSKIAYKNDKELNLTPKEFILLKIFMENIGTSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGVGYIWKED 231


>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
 gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 128/230 (55%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E ++V V + GE  ++L    + D I+LDL L +  G E
Sbjct: 5   KILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEKDGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+  +S  DKV GL+ GADDY++KPF+  EL+AR++  +RR   
Sbjct: 65  VCREVRAQK-NIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       S +V  D+ +  +A  ++  G  + LT +E+ +   L+  +   LT+E  
Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      +V+ +DV + +LR+K+   +    YI T  G GY + E 
Sbjct: 184 LQTVWGYDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFIGEE 233


>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DD+ +   +   L  E + V + + G++G++L    + D +ILD+ +  + G+E
Sbjct: 4   RIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A    PV +L+ M  ++D+V+GL  GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 64  VCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPD 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +   D++++LD++     G RI LT KE+ ++ L        LT++  ++ ++
Sbjct: 124 RQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  +++V+I  LR+K +     K  I+TV G GYVLR
Sbjct: 184 GYDYSGESNVLEVYIAMLRQK-TEDGTAKRLIQTVRGTGYVLR 225


>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
 gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
           16795]
          Length = 237

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +   +E+ L +E + V     G++ +++ +  + D ++LD+ +  + G E
Sbjct: 10  KILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K + P+ +LS  S   DK++GL +GADDY++KPFN  E   R++A++RRS  
Sbjct: 70  VCKKVRQNK-NMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      LI  G L+++     V   G  I LT +E+ ++ L++  K    + E  
Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       + V I +LR KL     G+  I TVWG GY + +
Sbjct: 189 FEKVWKEKYFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIEK 237


>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 226

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV +L+   +  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQLRQRS-SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+        Y+ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFEP 226


>gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359]
 gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 92/224 (41%), Positives = 134/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA  I   LK E F V V   GE+G+ +    +FD +ILD+ L    G+
Sbjct: 11  MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A+R   I+TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR++A++RR  
Sbjct: 71  EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V GDL ++   + V   G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D      +   I  LRKK+ +    K  I TV G GYV+R+ 
Sbjct: 191 FDDTVFSDTLRSHIKNLRKKI-DRGFKKKIIHTVRGIGYVVRDE 233


>gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family
           protein [Maritimibacter alkaliphilus HTCC2654]
 gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family
           protein [Rhodobacterales bacterium HTCC2654]
          Length = 237

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 154/228 (67%), Positives = 186/228 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N NVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIELMLTHANLNVYSTDLGEEGVDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K+RG   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAK+VEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+    E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLAEATEGENYIETVWGRGYVLRDPQPVE 228


>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +V GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225


>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
 gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   I  +L+   F     +  +  +        D ++LD  +    G +
Sbjct: 4   RILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIPGGSGLQ 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +++ ++        P+ +L+     EDKV+GL++GADDY+ KPF+ +ELVAR++AI+RR 
Sbjct: 64  IIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILRRL 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ +I    LS++  +  V  Q   I +   E++++           ++E  LN++
Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEED-GHDRMIQTVRGTGYRF 225


>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
 gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
           14863]
          Length = 231

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD      +E  L +E F V     G++ ++L      D +ILD+ +  + GF 
Sbjct: 6   RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R A  + P+ +L+      DKV G + GADDY++KPF+  ELV R+ AI+RR   
Sbjct: 66  VCGRIRAAS-AVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S  +  G L +N   +TV V      LT +E+ ++ L++       T+E  L  ++ 
Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWH 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G    +   + V I +LR+K+ +      +I+TVWG GY       +
Sbjct: 185 GDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231


>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
 gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
          Length = 238

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFE 234


>gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 237

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   I+L L  + F V     G   +EL   +  D IILD+ L D  G E
Sbjct: 5   KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR    S P+  LS   +  DK+ GL  G DDYI+KPF+  ELVARI A +RR+R 
Sbjct: 65  LCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S++    L+++    T+ V    + LT KE++++ LLS   N   +    
Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +H++   +  + + + V I  LRKK+         I T+ G GY L   A +
Sbjct: 184 YDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPE 236


>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 238

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I++ L+ E+F +     G+  +E     ++D IILD+ + +  G E
Sbjct: 6   KILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TPV +L+      ++V+G + GADDYI KPF+  E V R++A++RR   
Sbjct: 66  VCKELRKEK-DTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    +++++V   L+++ DA  V      + LT KEY+++  L+   +    +E 
Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGYKFE 234


>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 131/225 (58%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I+  L+   F+V  +D GE+ IEL K  + D I+LDL L  I G EV
Sbjct: 6   ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGIDGIEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R       TP+ +L+ M    D++ GL+ GADDY++KPF+  ELVARI+A++RRS 
Sbjct: 66  CKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRRSE 125

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +V  DL ++ +   V ++   I LT KE++++ +L+  +   L++ + L+ 
Sbjct: 126 EKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLDE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E + +DV I  LRKK+ +   G  YIET+ G GY ++
Sbjct: 186 VWGYDYFGETRTVDVHIRHLRKKIGDDQSG-EYIETIRGVGYKMK 229


>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   ++V +   G++ +   +  + D  +LD+ +  + G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR +    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+R+++RR+R
Sbjct: 61  GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             A        S +   DL +++ ++ V      I LT  E+ ++ LL       LT++ 
Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++          ++V+I  LR+K     G    I TV G GYV+RE+A 
Sbjct: 181 ILEEVWGHEFPSSGNALEVYIGYLRRKTEAD-GEPRLIHTVRGVGYVMRESAP 232


>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E F ++    G++ +++ +  + D +I+D+ + ++ G+E
Sbjct: 3   RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+       KV+G + GADDY+ KPF+  ELVAR++A+++R R 
Sbjct: 63  LCRELR-DYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS+N       +    I L  KE++++  L+     T T++  +  ++  
Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + + + +DV I +LR++ +        I T+ G GY L   +
Sbjct: 182 DYDGDERTVDVHIKRLRERFAQ-PDSPFSIRTIRGLGYRLEAQS 224


>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 225

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+ +D+  +   +   LK E F V     G++ +++    +  D IILD+ + ++ G
Sbjct: 4   MKILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPELDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V R +R +    PV +L+  S   D++ G   GAD+YI+KPF+   LVAR++A++RRS
Sbjct: 64  WSVCRQIRKSS-RVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S  +   L +N   + V + G ++ L+ KE++++  L+  K   L+++  LN ++
Sbjct: 123 GNAEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     + + +D  I KLR KL +     ++I+TV G GY   
Sbjct: 183 DYDYFGDARTVDTHIKKLRLKLGDKG---DFIQTVRGLGYKFE 222


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 127/228 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+  A ++   L S+N+ V     G++G EL + + +D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+  ++  DK  GL +GADDY+ KPF  EEL ARIRA++RR++
Sbjct: 61  TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +QS++  GDL  +  +  V  +   + LT KEY ++EL         +    L +L+ 
Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + P  + +   I  LR+KL  A    + IETV+G GY L+   + E
Sbjct: 181 FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRLKPKERRE 228



 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 18/168 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +   +  +L+     +          EL +    D +ILD+ +  I G E
Sbjct: 513 RVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTE 572

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R      S P+  L+  S  E   +    GADD++SKP    ELV RI   + R 
Sbjct: 573 LCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLERI 632

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           R   + +          D +  +       LT  E ++   L+L    
Sbjct: 633 RAVKREMG---------DRQQAKAG-----LTRSELRL--QLALEAGQ 664



 Score = 44.1 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI----- 57
           +L+++ D++LA  +     +  F++ V                D ++L+     I     
Sbjct: 389 LLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLLE---PAIFPTAA 445

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
               +L  L+      P  I +    +  ++   + G   ++ K     +++  I  ++ 
Sbjct: 446 ESLTLLAELKKHAPPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVLH 505

Query: 118 RSRGHAQSLIVTGD 131
           +       ++V  D
Sbjct: 506 QVDREKARVMVVDD 519


>gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 227

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+IED++++    E+  + E F       G+DG+   K  + +D +ILD+ L  + G
Sbjct: 1   MKILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQEDDWDLLILDIMLPSMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             + + +R      P+ +L+   +  D+V G   GADDY++KPF+   L+ARI+A+ RR 
Sbjct: 61  LTICQKVRQIS-DVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVKRRF 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              +       + T    ++   + V + G  I  LT KEY ++           ++E  
Sbjct: 120 TQTTIQKEDERLATAHFLLDKKTREVFLDGEPIENLTPKEYDLLCFFIQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+ +    K ++ TVWG GY   E+
Sbjct: 180 LEQIWGYQFYGDERTVDVHIKRLRQKIGDGP--KPFLYTVWGVGYKFDED 227


>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   F V     G   I      E D IILD+ L D+ GF 
Sbjct: 6   KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V + LR +  ++P+  L+     EDK+ GL  G DDY++KPF+ +E+VARI+AI+RR+ +
Sbjct: 66  VTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQ 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  GDL+++ D   V +   +I L+  E++++  L L  N  L+K   L+H+++
Sbjct: 126 DDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++ +I  LR+KL         I+T  G GY+L+
Sbjct: 186 YDFNGDAGIVESYISYLRRKLDIHTEEP-LIQTKRGFGYMLK 226


>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L+ E + V     G   +   + +  D ++LD+ L  + GFE
Sbjct: 4   RILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  ALR    + P+ +L+  S   D V GL++GADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCAALRAES-NVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  I   DL +++    V      I LT  E+ ++  L+   +   ++E  L  ++  
Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGYR 221


>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
 gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
           F0309]
          Length = 240

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 75  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GDL ++ DA  V   G  I L+  E++++  L +     ++K   L+H++
Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237


>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
 gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     G++ ++  +  ++D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR R 
Sbjct: 64  VCRAVREFS-NVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRS 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I +GD+S++ D +++ + G  I+LT KE+ M+ LL        +++  L+
Sbjct: 123 REAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLH 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV I +LR+K+  +     Y+ T WG GY  +
Sbjct: 183 TIWGSDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYFQ 228


>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 224

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L  E +NV +   G   +E+ +    D ++LDL L  I G EV
Sbjct: 4   ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R LR A    P+ +L+   ++ D+V GL++GADDY+ KPF  EEL+ARIR  +RR  R 
Sbjct: 64  ARRLRAAS-DVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQRE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L+++L A  V +   R+ LT KEY ++EL        +T+++  + ++  
Sbjct: 123 DTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  II+V++  LR+KL  A G    I TV G GY+LRE 
Sbjct: 183 NFGGESNIIEVYVRYLRQKLE-ARGEPRLIHTVRGVGYILREE 224


>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 257

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 18/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--------------FYEFDA 47
           ++LL+ED++ +  ++ L L  E F V V D G+  +E+                  +   
Sbjct: 19  KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           IILDL L  + G ++ R +R   I  P+ ILS   +  D+V GL+ GADDY++KPF   E
Sbjct: 79  IILDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRE 138

Query: 108 LVARIRAIVRRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           L+AR RA++RR +     + +S++   D++++ D   V +    + L+ KE++++ELL  
Sbjct: 139 LIARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLS 198

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     ++   ++ ++      + K +DV I  LR+KL    G   Y++TV G GY L
Sbjct: 199 QPKRVWSRNQIIDQVWGYDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256


>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 222

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++   + E +  +    G++ +E    + FD I+LD+ +    GF+
Sbjct: 3   KILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    +TPV +++      DK+ G   GADDYI+KPF+ +EL+ARI+A+++RS  
Sbjct: 63  TLSEIR-GSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV GDL VN+ + TV ++G+ + LT KE+ ++  L+   +  L++E  L  ++  
Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWGF 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D  I  LR++L +    +  I+TVWG GY  
Sbjct: 182 DYFGDTRTVDTHIKSLRERLGDY---RELIQTVWGVGYKF 218


>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 240

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 15  KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 75  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 134

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GDL ++ DA  V   G  I L+  E++++  L +     ++K   L+H++
Sbjct: 135 SEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 195 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 237


>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
          Length = 239

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ EN+ +   D G   +E+    E+D I+LD+ +  + G E
Sbjct: 6   RILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPGMDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR   
Sbjct: 66  VCKEIREKK-ATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSSS 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    + +IV   L+++ DA  V  +G  I+LT KEY+++  L+   +    +E 
Sbjct: 125 TTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGYKFE 234


>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 233

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL+ ED+  +   + + LK   ++V   + GED ++  +     FD ++LD+ +  I G
Sbjct: 3   RILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V + +R    +  + +L+  +   DKV GL  GADDYI+KPF+  EL AR+ AI RR 
Sbjct: 63  FTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRRV 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   QS+I +G  ++NL ++TV   G  I LT  EYQ++E     KNT L +   
Sbjct: 123 CMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPIELTQVEYQIMEFFMNNKNTALDRASI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           LNH++      + KI+DV I ++R K+        YI T+WG GY   +
Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEEEPSNPKYIITIWGYGYKWND 231


>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
 gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
 gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
           FRI909]
          Length = 241

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY       DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240


>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
 gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
           [Dehalococcoides sp. VS]
          Length = 227

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +A  ++  L+ E F V VT  G+  +        D IILDL L +I G++
Sbjct: 4   QILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPEISGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++A +RRS  
Sbjct: 64  VCREIRKES-RVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRSEY 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S+++   L ++   + V++ G  + LT  E+ ++  L+       ++   L+ L 
Sbjct: 123 TPSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDKL- 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   + ID  I  LRKK+        YI T+ G GY +++  
Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKMKDKG 227


>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
 gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
          Length = 231

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
 gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
 gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 231

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 229

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  + L L +E + V+     +D +E  K    D  +LD+ + +I GFE
Sbjct: 4   KILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEISGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   PV +L+      DK++GL  GADDYI+KPFN  ELVAR++A +RR + 
Sbjct: 64  ICRIIRE-KYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  S      I    L ++ D+    +    ++LT  E+ ++  L   +   +T E    
Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I +LR+K+        +I+TVWG GY + E
Sbjct: 183 AVWKKKYFDSNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229


>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 225

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++LK+E F  +V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRVLRSDSG-VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  G + +++ A  V   G  I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGYK 221


>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 222

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 136/221 (61%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +   ++  L+  NF+ +  + G  GI++ K   FD ++LD+ L D+ G+ 
Sbjct: 3   KVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSGWN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R +    PV +++  S   D++ G + GADDY+ KPF+  E+VARI+AI+ RS+ 
Sbjct: 63  VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKW 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +LI    ++++ D++ V+V G +I LT KE+ ++ LL+      L++E  LN ++ 
Sbjct: 122 AESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +++ +D  I +LR+KL +    ++ I+TVWG GY L
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGD---KRDIIKTVWGYGYKL 219


>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
 gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
          Length = 223

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL  ED+ AL       LK+E F V     G + ++     ++D +ILD+ +  I G 
Sbjct: 1   MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV +L+   ++ D+V GL +GADDY++KPF   EL ARIRA++RR+ 
Sbjct: 61  TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +        DL+V    + V   G  I L+ +E+ ++E L   K   L++    N ++D
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I+DV+I  LRKK+ +    K  I TV G GY LRE 
Sbjct: 181 FGFEGGSNIVDVYIRYLRKKI-DDPFEKKLIHTVRGAGYTLREE 223


>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ +A ++   L  +++ V +   GE G EL + + +D ++LD+ L  + G 
Sbjct: 1   MKLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R +R   +  PV +L+   +  +KV GL +GADDY+ KP   EE+ ARIRA++RR  
Sbjct: 61  AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++   DL +N +   V  Q   I LT KEY ++EL    K    ++   L HL+ 
Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   +   I  LR KL  A    + I+TV+G GY L++
Sbjct: 181 YEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRLKQ 223


>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED+  LA  IE  L    +   +   G   +   +  + D I+LD+ L D  GFE
Sbjct: 4   KIAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDADGFE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R +     TPV  L+  S   D+V GL+ G DDY++KPF+  EL+AR++A +RR 
Sbjct: 64  LCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLRRE 123

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A+   +  G   ++  A+ V + G  I LT  E+ ++E          +++  L  +
Sbjct: 124 EMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLEAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +     + +DV + +LR+++        Y+ TV G GY   E
Sbjct: 184 WGEQRYVTPRTVDVHVRRLREQIEEQPDAPRYLTTVRGFGYRFEE 228


>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
 gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           ATCC 4342]
          Length = 230

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++ +      I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 804

 Score =  280 bits (717), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 127/221 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD+ LA  I+  LKS+++ V +   G+ G+E  + +E+D I+LDL L  + G 
Sbjct: 1   MKLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  +  R     TP+ +++       KVR L +GADDY+ KPFN +EL+AR+RA++RR  
Sbjct: 61  QFCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+  G L +N  +  V  QG  +HLT KEY ++EL    +N   ++   + HL+ 
Sbjct: 121 LSSTPLLQWGPLDLNPSSCQVSYQGQLLHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + P    +   I  LR+KL  A    N IETV+G GY L
Sbjct: 181 FDESPTENAVRTQIKSLRQKLRGAGASPNLIETVYGLGYRL 221



 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  L       L+   F + +    +   E  +    D +ILD+ + +I G +
Sbjct: 509 KLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISGID 568

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + +R        PV  LS  +S +    G Q+GADDYI KP    +LV+RI
Sbjct: 569 LCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621



 Score = 56.8 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 2/107 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPG 59
           ++L++++D ALA +I    K       +             ++ D I+LDL   D    G
Sbjct: 384 QLLIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENG 443

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106
            E+L+ L     S P  +L+  +    +V+  + G   ++ KP   E
Sbjct: 444 LELLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPE 490


>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 235

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + ++  + ++ D  +LD+ L D+ GF 
Sbjct: 9   RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    PV  L+     EDK+ GL  G DDY++KPF+ +E+VARIRA++RR+  
Sbjct: 69  VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++ DA  V   G  + L+  E++++  L +  N  L+K   L+H++
Sbjct: 129 LDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+ +  G +  I T  G GY+LR
Sbjct: 189 EYDFNGDASIVESYISYLRRKI-DVGGREKMIHTKRGVGYMLR 230


>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 245

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +A  I   L+ E F   VT+ GE G+ + +    D I+LDL L  + G EV
Sbjct: 14  ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73

Query: 63  LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              +R         + +L+      D++ GL +GADDY+ KPF+  ELVAR+RA++RR  
Sbjct: 74  CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              Q    +  T    V+LD          +   + LTG E+ ++            +  
Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  L+      + +++D  I +LRKK+        +I+TV G GY   + 
Sbjct: 194 LIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDP 244


>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221


>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 136/228 (59%), Gaps = 9/228 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+K +   I+  L+ +++ V V   G++ +++ K  E+D ++LD+ L ++ G EV 
Sbjct: 6   LVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMDGMEVC 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+   +
Sbjct: 66  QAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKKS 124

Query: 124 QS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +S      +I   DL ++LD++ V  +   I+LT KE+ ++ELL+   +   ++E  L+ 
Sbjct: 125 KSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLLSI 184

Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +V+ +DV + +LR+K+        YI T WG GY  +E
Sbjct: 185 VWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 232


>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR   IL+ ED++ +A  + + L+ E ++V     G++ + + +    D IILD+ +  +
Sbjct: 1   MRRISILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R    + P+  LS  +S  DKV GL  G DDYI+KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQVRAQ-YNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLR 119

Query: 118 RS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS           +S++  G++ ++ D +TV + G  I LT KE+ ++ LL+       +
Sbjct: 120 RSMKLNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     +++         + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWNDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ D ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S    I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I+TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226


>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
 gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
          Length = 230

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     +  I  GDL+++    TVE  G  + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
 gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
 gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
           BDRD-ST196]
 gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
           2048]
          Length = 238

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFE 234


>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
 gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
 gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
 gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
 gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + LK+E + V   + GE+G+EL K  E   I+LD+ +  I G  +
Sbjct: 6   IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKM 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ +  GD+ +N+    V +    + LT +E+ ++ELL+  +   ++ E   
Sbjct: 125 NGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          + V I K+R+K+        Y++TVWG GY + ++
Sbjct: 185 ERVWKEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233


>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 218

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ +   +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 228

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D+  +   +   L+ E F +     G + +E+ + ++ D ++LD  L ++ G +V
Sbjct: 5   LLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPEMSGLDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR    S  + +++  +   DK+ GL+ GADDYI+KPF+  EL ARIR+++RR++G 
Sbjct: 65  CRELRRMG-SVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRTQGG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDL+++     V      I LT  E++++  L+ R  T  ++   L     
Sbjct: 124 GDEPSVLRRGDLTIDETKFRVWKGDQEIVLTPTEFKILVTLASRPGTVYSRLQLLQSALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  + +D  +  LRKK+ +      YI+TV+G GY   E
Sbjct: 184 ETYLNYERTVDTHVSHLRKKIEDDPAEPRYIQTVYGVGYRFGE 226


>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 244

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F V     G   +E    +  D I+LD+ L D  GF 
Sbjct: 18  RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGFA 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TPV  L+   ++ D++ GL  G DDY++KPF+ EE++ARI AI+RR+RG
Sbjct: 78  VVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRARG 137

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V  D+ ++ D+  V   G  I L+  E++++          L+K   L+H+
Sbjct: 138 GAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     +  I++ ++  LR+K+ N       I T+ G GYVLR+ 
Sbjct: 198 WNYDFRGDAGIVESYVSALRRKVDNT--EPRLIHTLRGVGYVLRQP 241


>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 223

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V V   G +G++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
 gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD ++A      L+   F V +   GE+G++      +D IILD+ L  + GFE
Sbjct: 3   KILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R  K + P+  +S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    + I    ++++  A+ V + G     T KE+ ++  L +  N  L+KE    
Sbjct: 122 LAGKQTQTNTIFVHGITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +V  + V I K+R K+        ++ETVWG GY  
Sbjct: 182 KIWGLESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGYRF 226


>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 230

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + ++L      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+  
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTSP 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +   DL+++   + V     +I LT  E+ ++E+L       LT+   L  +
Sbjct: 124 DEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V+I  LR+K + A+G    I TV G GYVLRE   
Sbjct: 184 WGFDFPTSGNALEVYIGYLRRK-TEASGEPRLIHTVRGVGYVLRETPP 230


>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
          Length = 240

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L+ E + V     GE+ + +    + D ++LD  L  + G E+
Sbjct: 14  VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R    +   P+ +L+      DK+RGL +GADDY++KPF+  EL+AR+RA++RR++
Sbjct: 74  CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQ 133

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I  GD+S++L +  V   G  IHL   E+++++       T  ++E  L+ ++
Sbjct: 134 PVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L+      + I TV   GY L
Sbjct: 194 GPDIYVEPRTVDVHIRRLRKALNCDT-EADIIRTVRAAGYAL 234


>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+I+DD+ +   +   L  E + V     G +G+      E D ++LD+ +  + 
Sbjct: 1   MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFEV R +R    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR
Sbjct: 61  GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +    +   DL ++ +++ V   G R+ LT KE++++ L        L++++ +
Sbjct: 121 KTEQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIM 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E  +++V+I  LR+K     GGK  I T+ G GY+LR + 
Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEQD-GGKRLIRTIRGAGYILRGDV 229


>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 237

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 6   RILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR A  + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 66  AARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  + ++   DL ++L  + V     R+ LT  E+ ++EL        LT+E  
Sbjct: 126 ASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++    EP    +DV++  LR+K + AAG    + TV G GY LR    +
Sbjct: 186 LKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYALRTGGPE 237


>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius CECT 5713]
          Length = 233

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 127/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   ++  L+   + V   + G D ++     ++D IILDL L  I G E
Sbjct: 3   KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  KI+T + IL+      DK+ GL+ GADDY++KPF+  E+VAR++A+ RR   
Sbjct: 63  VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S   +++    G+  VNLD+  +     + I LT KE++++     +K   L +E 
Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LN+++      + +++D+ +  LR+K+        +++TV G GY   + 
Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFEDE 233


>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
 gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
          Length = 233

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DDK +   + L L+ + + V +   GE+ +      + D I+LD+ L  I G++
Sbjct: 5   RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +++      DKV GL+ GADDYI KPF+ +E++ARI+A+ RR   
Sbjct: 65  VCREIR-KKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQ 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +    LSVN+    + V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SSAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      + + IDV + +LR+KL      K  ++TVWG GY       +E
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFEVAETNE 233


>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQVRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 230

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  ++  L+   + V V   G    +  K  +F+AI+LDL L ++ G  
Sbjct: 3   KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  K+STP+ +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 63  VLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 122

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       I   DL +N   KTV  +   + LT +EY ++   + R    + +E  L
Sbjct: 123 STDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E +++D+ I  LR K+ +       ++TV G GY +
Sbjct: 183 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 228


>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 230

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK     
Sbjct: 123 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
 gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +  + G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 239

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 112/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A+ + + L      +     GE  +      E+D I+LD+ L ++ G ++
Sbjct: 5   ILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMSGLDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +    + +L+  +S  D+V GL+ GADDY++KPF+  EL AR+R+ +R+    
Sbjct: 65  CRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHAL 124

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            QS          + TGDL ++     V +    + LT  E++++  L+       ++  
Sbjct: 125 RQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELVLTATEFELLHHLASHPGQVFSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++          ++  I +LR KL N A     ++TVWG GY      
Sbjct: 185 LLESVWGYHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFNPQG 236


>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +D+  +   + +  K E F V     G + +   +  + D I+LD+ +  + G EV
Sbjct: 7   VLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPVLDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R      P+ +L+   S +D++ GL+ GADDYISKPFN  E+VAR++A++RR+   
Sbjct: 67  CKQVRKIS-DIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTNAS 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++   +L +NL    V   G  I  T KE +++  L+       ++   L  +
Sbjct: 126 MSSQNKQVLEYPNLMINLSEYRVVAFGREITFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I ++R KL         I TVWG GY   
Sbjct: 186 WGYTYYGDTRTVDTHIKRVRHKLDIPPDSTWDIMTVWGVGYKFE 229


>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
 gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
          Length = 234

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  +  E + V     G + IEL +  + D IILDL L +I G E
Sbjct: 3   KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+ +LS   S  DKV GL+ GADDY++KPF+  EL AR++A++RR+  
Sbjct: 63  VAKTIRKTS-SVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A            +   DL +  DA   +  G  + LT +E++++  L+      +T+E
Sbjct: 122 VAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++      +V+ +DV I +LR+K+ +      YI T  G GY +R N
Sbjct: 182 HLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233


>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 222

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K +A  ++L L+ E +       G DG+E  + + +D ++LD+ L ++ G E
Sbjct: 3   RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VLR +R+    TP+ +L+  +SI DKV GL  GA+DYI+KPF  EEL+AR+RA +R  ++
Sbjct: 63  VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQT 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  ++  +L++N   + V+     I LT KE++++      K   L++E  L +++
Sbjct: 123 RERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +IDV++  LRKKL         ++TV G GY L+E
Sbjct: 183 GFDYYGDTNVIDVYVRYLRKKL----SLTEALQTVRGVGYRLKE 222


>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 223

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 1/217 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD ALA  I L+LK+E F+      G+  I + +    D ++LD+ L    G EV 
Sbjct: 2   LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R      PV +L+  S   D V+GL+SGADDYISKPF  +ELVARIRA +RR+   A
Sbjct: 62  RQIRAESG-VPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEPA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +  GDL +++    V   G  I LT  E+ ++  L+ +     ++E+ L  ++  R 
Sbjct: 121 PERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWGYRH 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + ++++V + +LR K+ +       + TV G GY 
Sbjct: 181 AADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGYK 217


>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++   D+++N+    V++    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          + V I KLR+K+        YI+TVWG GY + +
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 130/227 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +A+++   L  +N+ V + + G+   +L + YE+D I+LD+ L  + G 
Sbjct: 1   MKILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R +    P+ +L+G  S  DK  GL +GADDY+ KP ++EELVAR+RA++RR  
Sbjct: 61  SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++Q ++    L ++  +  V  Q  ++ LT KEY ++ELL        +  M L+HL+ 
Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             D P    +   I  LR KL  A    + +ETV+G GY L+    D
Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQEND 227



 Score =   99 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD      ++++L      +   +      E  +  + D +ILD+ +  + G E
Sbjct: 375 KILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTMSGIE 434

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+  L+  S++E   +    GADD++SKP    EL  RI   + R 
Sbjct: 435 LCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNRLERV 494

Query: 120 R 120
           R
Sbjct: 495 R 495



 Score = 69.9 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD      +E +L    + V     G+  I        D I+LDL +  + G+E 
Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123

Query: 63   LRALRVAKI--STPVCILS 79
            +  L+        P+ I S
Sbjct: 1124 MAGLKKCSDTRDIPIVICS 1142



 Score = 54.1 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)

Query: 2    RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +IL+IEDD  LA  +  +        ++   G + I L +    D +ILDL L +  GF 
Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252

Query: 62   VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118
            V+  L+      S PV + S     + +   L+ G  ++ +K     +E   R+  +++R
Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312


>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
 gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
          Length = 239

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ + + +    + ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G L ++++ + V   G RI LTG E+ ++ELL  +     ++   
Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL       + I T  G GY+ +
Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGYLFQ 235


>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
           TK24]
 gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 248

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E ++  V   G D +E    Y  D ++LD+ +  + G  
Sbjct: 16  RILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGLT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R A   TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 76  AARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 135

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +   DL+++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 136 AAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTREQ 195

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR+   +
Sbjct: 196 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRQGGAE 248


>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E +   +   GE  +     ++   I+LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +LS    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR   
Sbjct: 66  VCREIRA-KSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYHS 124

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    +   DL VN+    V   G  + +  KE +++  LS   N   T+E
Sbjct: 125 SNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L++++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDN--QFWSISTVWGIGYKFE 232


>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
 gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
 gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
 gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 242

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 126/240 (52%), Gaps = 15/240 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K ++  I+  L  E F+V     GE+ +E  +    D +ILDL L    G E
Sbjct: 4   KILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +++      DKV GL+ GADDY++KPF+  ELVAR++A +RR   
Sbjct: 64  VAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122

Query: 120 ------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                       +    + I  G+L +  DA  VE  G +I LT +E++++  ++   + 
Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +T+E  L  ++      +V+ +DV + +LR+K+ +       + T  G GY +++  ++
Sbjct: 183 VMTREHLLQTVWGYDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGYFVKQQTEE 242


>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+K +   I+  L+ + + V     G + +++ K  E+D ++LD+ L ++ G EV 
Sbjct: 5   LVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMDGMEVC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+   A
Sbjct: 65  QAIREFS-EMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKKA 123

Query: 124 ------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL ++LD++ V  +   ++LT KE+ ++ELL+   +   ++E  L+ 
Sbjct: 124 KAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLLSI 183

Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +V+ +DV + +LR+K+        YI T WG GY  +E
Sbjct: 184 VWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYFKE 231


>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
 gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
          Length = 358

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L ++ + V+    G + ++     + D I+LDL L  + G E
Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLMLPGLSGLE 192

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+  ++ +D + GL  GADDYI+KPF+ +ELVAR+  ++RR + 
Sbjct: 193 VCKKIR-DSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    +   G L +  D K V  QG  I LT  EY ++ LL+       ++E  L+ +
Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   ++ID  I  +R+K+ +      +I T +G GY  
Sbjct: 312 KGLDFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGTGYRF 354


>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + GE G++     EFD  ILDL L  + GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K +TPV ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKIRETK-NTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
 gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+   ++V V   G+   +L K   FDAI+LDL L  I G  
Sbjct: 3   KILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR  K+STPV +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 63  LLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQV 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q      +I   ++ ++ + K V      + LT +EY+++   + R    + +E  L 
Sbjct: 123 DHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E +++D+ I  LR+K+         ++TV G GY L 
Sbjct: 183 AVWGYEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTLV 228


>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 89/228 (39%), Positives = 128/228 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  LAH++   L+ + + V     GE G EL    E+D IILDL L  + G 
Sbjct: 1   MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR       + IL+     E++V GL +GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q L+   DL ++   +TV +   R++LT KE+ ++  L   +   +T+EM L H++D
Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G   P    + V I  LR+KL +      YIETV G GY L    + E
Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRLGNAGESE 228


>gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
 gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 157/229 (68%), Positives = 193/229 (84%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG++ ++ K+R    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV   R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKLS+A GG+NYIETVWGRGYVLR + +DE 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACGGENYIETVWGRGYVLR-DPQDEA 228


>gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
 gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family
           protein [Roseovarius sp. TM1035]
          Length = 238

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 152/226 (67%), Positives = 184/226 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I+TP+ ILSG    E K++G   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIATPILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTV+  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL  A  G NYIETVWGRGYVLR+  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLCEATDGVNYIETVWGRGYVLRDPEQ 226


>gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
 gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis
           KC583]
          Length = 233

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 165/229 (72%), Positives = 195/229 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK ++ SIELMLKS NFNVY TDLGE+G +L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDDKTMSQSIELMLKSGNFNVYTTDLGEEGTDLGKLYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+AKI TPV ILSGM+SIEDKVRG   GADDY++KPF+K+EL+ARI A+VRRS+
Sbjct: 61  DVLRTLRLAKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+IVTGDL VNLD KTVEV G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           G DEPE+KIIDVFICKLRKKL + + G +YI+TVWGRGYVLR+   + T
Sbjct: 181 GMDEPELKIIDVFICKLRKKLDSVSSGISYIDTVWGRGYVLRDPIAENT 229


>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
 gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G  G+E     EFD  ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKIREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  ++    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 236

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ AL   + L L+ E F+V     G   + + +  + D ++LDL + ++ G+E 
Sbjct: 4   ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LRA    +  TPV +L+      DK+ GL+ GADDY++KPFN  EL+ARIRA++RR++  
Sbjct: 64  LRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQT 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   D+ ++   +TV V G  + LT  E+ ++  L        ++   L+ +  
Sbjct: 123 PLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + IDV I  LR K+        YIETV+G GY  
Sbjct: 183 DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223


>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + ++       D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR    + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRSLRQRS-NVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGD 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++  G + +++D   V V+G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 VEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      + K +DV + +LR K+ +       I TV G GY   + A+D
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGYKF-DPAED 229


>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 218

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 224

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +++ +    D ++LDL L  + G E
Sbjct: 4   RILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 64  VCRQVRAES-DVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++   TV     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221


>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  ++L      D ++LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R  + +   P+ +L+     EDKVRGL+ GADDY++KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 SPTSLEEPIDVQGLMLDPISHRVTVGEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +     I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEP-SNHDRLIQTVRGAGYRF 225


>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
 gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
          Length = 238

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ + + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G +I LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 234

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L +E F V+    G   + L +  + D ++LD+ L  + G EV
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R L     S  V +L+  +   DK+ GL  GADDY++KPF+  ELVAR++AI+RR+R  
Sbjct: 66  CRQL-HRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRVI 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + + ++    L ++ + + VE  G R+ LT +E+ ++  L+       T+E  L 
Sbjct: 125 RAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        +++DV I  LR+KL +   G   ++TV G GY   
Sbjct: 185 RVWGPDFAGIDRVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKFV 230


>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
           BAA-613]
          Length = 235

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/234 (34%), Positives = 129/234 (55%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L+ +   V     GE+ IEL K  E+D ++LD+ L    G+E
Sbjct: 3   RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V +A+R      P+ +L+      DK+ GL+ GADDYISKPFN  E+ ARI+AI+RRS  
Sbjct: 63  VCQAIREFS-DMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGK 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +I  GDL ++ +++ V +    I+LT KE+ ++ELL    N   ++E 
Sbjct: 122 SKRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREA 181

Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L +++     D  +V+ +DV + +LR+K+  +     Y+ T WG GY  R  A
Sbjct: 182 LLTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYFRVKA 235


>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +   L+ +   V     GE+ I L K  E+D ++LD+ L    G+EV
Sbjct: 4   VLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDGYEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R      P+ +L+   +  DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+   
Sbjct: 64  CQAIREFS-EMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +++ GDL ++ D++ V +    I+LT KE+ ++ELL+       ++E  L
Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182

Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     D  +V+ +DV + +LR+K+  +     Y+ T WG GY  
Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230


>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus ATCC 19977]
 gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
           abscessus]
          Length = 247

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F+VY  D G   ++L +    DA+ILD+ +  + GF 
Sbjct: 22  KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   I  P   L+    ++DK+ GL  GADDY++KPF+ EE+VAR+R I+RR   
Sbjct: 82  VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    +S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKI--DNGEKRLLHTLRGVGYVLREP 246


>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
 gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
          Length = 231

 Score =  279 bits (716), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
 gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
          Length = 241

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  +L     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKDVWHYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEVKASDEPT 240


>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 228

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  ++  +   LK E + V     G+ G+ L     +DA ++D+ L ++ G 
Sbjct: 6   MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++R LR  + + PV  LS  +S+ED+V+GLQ+G DDY++KPF   EL AR++A++RR S
Sbjct: 66  SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    + +  GD++++L ++TV V G  + L  +E+ ++E L       +TK M L H++
Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  ++DV + +LR K+      K  IET+ G GYV +
Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDPD---KTRIETLRGVGYVFK 225


>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 252

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---------EFDAIILDL 52
           RIL++ED+  +   I L L+ E + +     G   + L +           EFD ++LDL
Sbjct: 20  RILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDL 79

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR 
Sbjct: 80  MLPQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 139

Query: 113 RAIVRRSRGHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RA++RR +  + S        D+++      V +    I+L+ KEY+++EL         
Sbjct: 140 RALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRVW 199

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 SRDQLIEQIWGPDFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGYRF 251


>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 231

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 226

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F+      G   ++  +    D I+LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+  +   D V+GL+SGADDYI KPFN +ELVARIR  +R  + 
Sbjct: 64  ICTRVRAESG-VPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL V++ A  V    + I LT  E++++  L+ +     ++EM L  ++  
Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + + ++++V + +LR K+         + TV G GY 
Sbjct: 183 HYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGYR 221


>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
 gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 240

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  + L L+ E + +     G  G+   +   +DA+ILDL L  + G E
Sbjct: 6   KILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++       +    L ++  A+ V +    + LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++    E     ++  I +LR K+         I TVWG+GY    +++
Sbjct: 186 NQVWGYEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKFVSSSE 236


>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 132/228 (57%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  ++L  + E + V VT  G  G++     ++D ++LD+ L  I GFE
Sbjct: 4   KILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+    ++DKV GL  GADDY++KPF+ EEL AR+RA +R+ + 
Sbjct: 64  VLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H  + ++   D+ ++L    V   G +I LT KE+ ++E L    N  LT+E  L  ++ 
Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                +  I+DV+I  LR K+ +    +  I T+ G GY L+E+  ++
Sbjct: 183 YDYYGDTNIVDVYIRYLRSKI-DDPFDRKLIHTIRGVGYTLKEDKDED 229


>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
          Length = 223

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
 gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +A  +EL LK+EN+ V+     ++ +E       D  ILD+ L D+ G  
Sbjct: 4   KVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231


>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 232

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +    + E F V  T  GED +   +   +D +ILD+GL  I GF 
Sbjct: 3   RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV +L+  +   D+V GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 63  VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++     GD       L ++   +    +  ++ L  KE+ ++  L+       T+E+ 
Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L  ++   +  + + +DV I +LR KLS      N I+T WG GY   E
Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231


>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 237

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 132/231 (57%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ AL  +++  L+ E + V +   G   +E+ +   ++ ++LD+ +  + G  
Sbjct: 8   RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A    PV +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RA++RRS  
Sbjct: 68  ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A +       +++ GDL ++  ++ V   G  + LT  EY ++ELL +     LT+E  
Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+ ++    EP    +DV++  LR+K + AAG    I TV G GYVLR + 
Sbjct: 188 LSEVWGFDFEPSSNSLDVYVMYLRRK-TEAAGRSRLIHTVRGVGYVLRSSP 237


>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
 gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ LK+E F VY    G++ +E  +    D  ILD+ L DI GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFHI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   +
Sbjct: 65  CQKIREKYY-YPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             S               L +N +     + G  + LT  E+ ++  L   +   +  E 
Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++  +       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 251

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +   +  + D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEK 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + S      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 TSTSGIPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EQVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 238


>gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19]
 gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19]
          Length = 226

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L+  ++  L    + V     GE+   L     +D IILDLGL  I G 
Sbjct: 1   MRILLAEDDPDLSRQLKASLSDAGYVVDHAPDGEEAHFLGDTEPYDCIILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R     TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA+VRR+ 
Sbjct: 61  SVLERWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ L+V G L ++  A    V G  + LT  EY+++  L + +N  +++   + HLYD
Sbjct: 121 GHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKK+ N       IETV G GY L+ 
Sbjct: 181 QDFDRDSNTIEVFMGRLRKKIGND-----RIETVRGLGYRLKP 218


>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 233

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F   + + GE  I     +E + ++LDL L  I G++
Sbjct: 6   KILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRT-KSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q +       +   DL +N+   +V+  G R+ +  KE +++  L+   N   T+E  
Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++      + + +DV I +LR+KLS+    K  + T+WG GY   
Sbjct: 185 LDQIWGYEYIGDTRTVDVHIKRLREKLSDH--EKWRLATIWGIGYKFE 230


>gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
 gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC
           49176]
          Length = 225

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L  ED+  L   +   L  E F+V     G + I+  +F ++D  ILD+ L    GF
Sbjct: 1   MRLLYAEDEPDLNRIVTKKLAEEGFSVDSCFDGREAIDNIQFTDYDVAILDIMLPHADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K +TPV  L+   SIED+V+GL SGA+DY+ KPF+ EEL+ARIR + R   
Sbjct: 61  AILKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +++++   DL +NL + TV   G  I LT KEYQ++E L   K   L++E   NH+++
Sbjct: 121 NLSENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +       I TV G GYV+RE+
Sbjct: 181 YDYEGGTNVIDVYIRYLRKKI-DDGFDTKLIHTVRGAGYVIRED 223


>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 251

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 81/245 (33%), Positives = 128/245 (52%), Gaps = 27/245 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +++  I L L+ E F+  + + GE+ + +   Y  D IILDL L  I G+E
Sbjct: 6   RILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  + S PV +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCRRLR-MRSSVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRCPK 124

Query: 122 ------------------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
                                    + + I   +L +N    +V  +G  + +  KE ++
Sbjct: 125 KRGDAALPGESAETVRRAEPEGGLRSGNYIEYPELIINQSNYSVFYRGKPVEMPPKELEL 184

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +  L+   N   T+E  L+H++      + + +DV I +LR+K+S     +  I TVWG 
Sbjct: 185 LYFLASSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKISGNGAWE--IATVWGI 242

Query: 218 GYVLR 222
           GY  R
Sbjct: 243 GYKFR 247


>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 226

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  MLK E +  +V   G +GI+  +    D ++LD+ L  + G +
Sbjct: 3   RILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR ++ S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARI+A++RR   
Sbjct: 63  VCRELR-SRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRRGE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +       +V G ++++++   V V G  + +  KE++++E+L   +   LT+   ++ +
Sbjct: 122 AEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR K+    G   +I TV G GY L 
Sbjct: 182 WGSDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225


>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F       G   +      + D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLPGLDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S   D V+GL+SGADDYI KPFN +ELVARIR  +R +  
Sbjct: 64  VCDLIRAESG-IPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  L+  GDL V+++   V     RI+LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + + + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 QYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221


>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 273

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L+  + + L+ E + V     G D +   + +  DA+ILD+ L DI G E
Sbjct: 42  RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+R+++RRS  
Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGL 161

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++  GDL ++ D+  V   G  I LT  E++++  L       L+K   L+ +
Sbjct: 162 VAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRV 221

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I+++++  LR+K+   AG    I TV G GYVL+ 
Sbjct: 222 WNYDFGGQANIVELYVSYLRRKI--DAGRNPMIHTVRGAGYVLKP 264


>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
 gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
          Length = 223

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L +ED+  +A+ ++  LK + F V   D G++G       E+DAIILD+ +    G 
Sbjct: 1   MNVLFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMVPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + PV +L+  + ++D++ GL  GADDYI+KPF  EELVARI A+VRRS 
Sbjct: 61  SILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSI 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+V G L ++   + V      I LT +E+ ++E L        T+   L H++ 
Sbjct: 121 GDRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P   ++DV I ++RKK+ +      +IE++ G GY  R
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPVDEAGWIESIRGVGYRFR 221


>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
          Length = 219

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 95/221 (42%), Positives = 134/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 233

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 13/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  L  +I   L+ E + V   + G+  +EL +    D ++LD+ L +I G EV
Sbjct: 4   VLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN-PDIVVLDILLPEIDGLEV 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ +L+  +   D++ GL+ GADDY++KPF+  EL+ARI+A++RR    
Sbjct: 63  CRRLRQRS-SVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +   +  +V+GDL ++     V+  G  I LT +E+ ++  L + K    + 
Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L  ++   +  +V+ + V I  LR+K+ +       IETV G GY  
Sbjct: 182 ERLLEEVWGYDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGYRF 231


>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 224

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 133/225 (59%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ +   I   L+ E + V     G++ +   +  ++DA ILD+ +    G+
Sbjct: 1   MRILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR     TPV  L+   SI D+V GL  GADDY+ KPF+ +EL+ARIR + R+  
Sbjct: 61  EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S+I  GDL ++  + +V      I L+ +EY ++E L+L +   L++E   NH+++
Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   ++DV+I  LRKK+ ++  GK  I TVWG G++L+E+A
Sbjct: 181 FDYSGGTNVVDVYISYLRKKI-DSGEGKKLIRTVWGTGWMLKEDA 224


>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
 gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
 gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
          Length = 228

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++AL   +  +L  E F   V D G D +   +  + D ++LD+ L  + G E
Sbjct: 3   KILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R +  S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKKIRASS-SVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q  +  G + ++++   V V G  + +  KE++++E+L       +T+   + 
Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV I +LR K+   A    Y+ TV G GY   
Sbjct: 182 RVWGADYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGYKFE 227


>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 218

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 636

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 123/222 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD ALA  +   L + N+ V     GE G      +++D ++LD  L  + G 
Sbjct: 1   MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+  +   +K+ GL++GADDY+ KPF+ +EL+ARIR ++RR+ 
Sbjct: 61  HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +++ G+L ++  +  V   G  + LT KEY ++EL     +   +  + L  L+ 
Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ P    +   + +LR+KLS A    + IETV G GY L+
Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLK 222



 Score = 85.3 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 2/117 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD      +  +L   NF +      +    L      D ++ D+ +  I GFE
Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + R LR        P+  LS       + +    GADDYI+KP + +    R+   +
Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRLLNRL 626


>gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 227

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L +ED+  +A+ +   LK + F V   D G++G       E+D +ILD+ +    G 
Sbjct: 1   MNVLFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMVPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + PV +L+  + ++D++ GL  GADDYI+KPF  EEL ARI A+VRRS 
Sbjct: 61  SILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q+++  G + ++   + V      I LT +E+ ++E L        T+   L H++ 
Sbjct: 121 SNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               P   ++DV I ++RKK+ +      +IE++ G GY  R+ 
Sbjct: 181 YDFNPNTNVVDVCIQRIRKKI-DPIDEPVWIESIRGVGYRFRKP 223


>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 220

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKEA 220


>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
 gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
 gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
          Length = 223

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+        Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFEP 223


>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 234

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A +         ++ GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDVPAE 234


>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 82/234 (35%), Positives = 130/234 (55%), Gaps = 15/234 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ + H + L LK   +       G DG+ L      D ++LD+ L  I GFE
Sbjct: 4   KILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R     TP+ +L+  S+ +D++ GL+ GADDY+ KPF+  ELV+R+RAI+RR   
Sbjct: 64  VCRRIRAWS-QTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     ++   +S++    LSV+L A+ VEVQG  + LT  E+ ++ L++   +  
Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            T+E+ +N ++      +   IDV I  LRKK+  A   + YI+TVW  GY   
Sbjct: 183 FTREILMNKVWGYDYLGDGHTIDVHISALRKKIE-AGEQQRYIKTVWRVGYRFE 235


>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 261

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 40  RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMNGID 99

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR+  
Sbjct: 100 VCKAIRSESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEA 158

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V  +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 159 EPAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 218

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 257


>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
           epidermidis ATCC 12228]
 gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
           RP62A]
 gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU144]
 gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU045]
 gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
           VCU028]
          Length = 241

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 127/237 (53%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL     +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 NTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY       DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT 240


>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G+      +++ IILDL L  + GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRRVRDEK-NTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SEIWDMESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRFK 228


>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
           16992]
          Length = 234

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GE+G+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDYI+KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A +         ++ GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +   A+
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDVPAE 234


>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ D ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S    I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I+TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226


>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
 gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
           15579]
          Length = 232

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++   D+++N+    V +    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          + V I KLR+K+        YI+TVWG GY + +
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 222

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 133/221 (60%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +   ++  L+  NF+    + G  GI + K   FD ++LD+ L D+ G+ 
Sbjct: 3   KVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSGWN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R +    PV +++  S   D++ G + GADDY+ KPF+  E++ARI+AI+ RS+ 
Sbjct: 63  VLKTIRESS-KIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKW 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    ++++ D++ V+V G +I LT KE+ ++ LL+      L++E  LN ++ 
Sbjct: 122 AESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +++ +D  I +LR+KL +    ++ I+TVWG GY L
Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGD---KRDIIKTVWGYGYKL 219


>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220


>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 250

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   I L L+ E +       G   +EL +  E       FD ++LDL L
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQINGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   +   A  +    D+ +      V V+   I+L+ KE+++++L         ++
Sbjct: 140 LIRRQGFTSLAAAPVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
 gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
          Length = 229

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  +EL L +E + V      ++ +        +  +LD+ + ++ GF +
Sbjct: 5   ILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPELDGFTL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RRS+ +
Sbjct: 65  CRRLRE-KYTFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRRSQRY 123

Query: 123 AQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  G       L++N +     +    + LT  E+ ++  L   +   ++ E    
Sbjct: 124 NGGQQEAGAIAAYRGLTLNRETHVCTLDEKPVELTPIEFSILWTLCKNRGRVISSEELFK 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +       + V I  LR+K+ ++A    YI+TVWG GY +
Sbjct: 184 EVWGEKYFTGNNTVMVHIRHLREKMQDSAENPRYIKTVWGVGYKI 228


>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 229

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G + +E+      DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +   DL+++   + V     +I LT  E+ ++E+L       LT+   L 
Sbjct: 121 PDDEDAESVAMKFSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSRILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 EVWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 229


>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis Bt407]
 gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 230

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++     + +I  GDL+++    TVE     + LT KE+++++L    +N   TK     
Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 228


>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 220

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKDA 220


>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 230

 Score =  279 bits (715), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  LA  +E  L  E + V V   G  G+        D ++LD  L  I G E
Sbjct: 10  HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +++    + D+  GL +GADDY+ KPF+ +EL++RIR  +R+ R 
Sbjct: 70  ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +V  DL ++   + V     ++ LT KEY ++  L       LT++  L H++  
Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR K+    G K  I+TV G GYVLR+
Sbjct: 190 DFTGDSNIIEVYIRYLRLKIE-GPGEKRLIQTVRGVGYVLRD 230


>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 230

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  I+L L+ E +   +   G +G+   + +++D ++LD+ L ++ G E
Sbjct: 5   RILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R     TPV +L+   ++ DKV GL  GA+DYI+KPF  EEL ARIR  +R    
Sbjct: 65  VLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPAS 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + +  G+L VN   + V  +   I LT KEY ++  +   KN  L+ E  L 
Sbjct: 125 TSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLLT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++      +  I+ V+I  LRKK+  +     YI+TV G GY+L+E
Sbjct: 185 NVWGFDYYGDTNIVYVYIRYLRKKIDASFSTP-YIQTVRGVGYMLKE 230


>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 226

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++++A  +  +L+ E F+  +   G D +E       D ++LDL L  + G E
Sbjct: 3   RVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR    + PV +++   S  DKV GL+ GADDYI+KP++  EL+ARIRA++RR   
Sbjct: 63  VCKQLRGRG-AVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGAD 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      ++  G + +++D   V V G    L  KE+ ++E L       LT+   ++ +
Sbjct: 122 ADDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        Y+ TV G GY L 
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKLE 225


>gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum
           V4]
          Length = 223

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  I   L+ E F V     G++ + +     +DA +LD+ L    G 
Sbjct: 1   MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR   IS P+ +LS  S   DK+ GL SGADDY+ KPF+ +ELVAR+RA++RR+ 
Sbjct: 61  SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G+L++NL  + V     +I LT KE+ ++ELL        T+      +++
Sbjct: 121 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   ++DV+I KLRKK+ +    +  I+TV G GY + 
Sbjct: 181 YHFDPGTNLVDVYIQKLRKKI-DEGEEQKLIQTVRGVGYKIE 221


>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 226

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G + ++  +    D ++LDL L +  G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +++   S  DKV GL+ GADDYI+KP++  ELVARIRA++RR+  
Sbjct: 63  VCRELRTTS-NVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++     G + +++D   V V G  I L  KE++++E+        LT+   ++ +
Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+    G   ++ TV G GY   
Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGYKFE 225


>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 238

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A  I L L  E F+  +   GE+ I   + Y+ + I+LDL L  I G+E
Sbjct: 6   KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREVRKTS-TIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
              +            +   DL +N    +V   G  I +  KE ++   L+   N   T
Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L+H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 REQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234


>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
 gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
 gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
          Length = 255

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   + V+    G + + L    + D +ILD+ L D+ GF 
Sbjct: 25  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 85  VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 144

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 145 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 204

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG----KNYIETVWGRGYVLREN 224
           +   E +  I++ +I  LR+KL           + I+T  G GY+LR+ 
Sbjct: 205 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDP 253


>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
 gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
          Length = 244

 Score =  279 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/240 (32%), Positives = 126/240 (52%), Gaps = 22/240 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ++A  + L L+ E ++  + + GE+ ++  +      IILDL L  I G+E
Sbjct: 6   KILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +  + P+ +LS      DKV GL+ GADDY+ KPF+ +ELVAR++A++RRS+ 
Sbjct: 66  VCRRIRTSS-NVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQH 124

Query: 122 -------------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                                   I   DL +NL    V  +G  I +  KE +++  L+
Sbjct: 125 VFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFLA 184

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              N   T+E  L+H++      + + +DV I +LR+KL      +  I TVWG GY  R
Sbjct: 185 SSPNQVFTREQLLDHIWGYEFAGDSRTVDVHIKRLREKLPQV--EEWEISTVWGIGYKFR 242


>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 226

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  L + +++VY    G   +E  +    D ++LDL L D  G 
Sbjct: 1   MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R    + P+ +L+  S  +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ 
Sbjct: 61  TVCRKIREIS-NVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +          +L V  D++ V +    ++LT  E+ ++  L    N   ++   +  
Sbjct: 120 TLSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTPTEFDILHALMSTPNKVFSRSDLIEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ N A    YI TV G GY  
Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I+  L+ E F+   +  G + +++      D IILDL +  + G 
Sbjct: 1   MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGL 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S  +G    +  T    V+LD +T   Q        + LT  E+ ++            +
Sbjct: 121 SLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++ L+      + +++D  + +LRKK+       ++I+TV G GY   ++ 
Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDSP 234


>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +       G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
 gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
          Length = 233

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+K +   I + L++E + V   + G   +EL +  + D IILD+ + ++ G E 
Sbjct: 6   IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ +LS  +   DK+ GL +GADDY++KPFN  EL+AR+++ +RR +  
Sbjct: 66  CTKIREEK-NMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKF 124

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I   +L++N     V+V   ++ LT +E+ ++ELL+  K    + E   
Sbjct: 125 NVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++          + V I KLR+K+        Y++TVWG GY + +
Sbjct: 185 ERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEK 232


>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 223

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G +G++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +     +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  IEL L+ E +   +   G   +E  +   +  I+LD+ L  + G E
Sbjct: 5   RILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    +TPV +L+   +I DKV GL  GA+DY++KPF  EEL+ARIRA +R    
Sbjct: 65  VLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLS 124

Query: 122 HAQSLIVTGDLSV-----NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + + +  G+L++     N   + ++     I LT +E+ ++  L       +T+E  L 
Sbjct: 125 TSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           H++      +  ++DV+I  +R+KL         I TV G GYV++E+ 
Sbjct: 185 HVWGFDYFGDTNVVDVYIRYMRQKLDKPFDAP-LIHTVRGVGYVMKESV 232


>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
 gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
           DSM 5476]
          Length = 230

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   + L L+ E + V ++  GE+ +      + D ++LD+ L  + G++
Sbjct: 5   KILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + PV +L+      DKV GL+ GADDY+ KPF+ +E++ARI+AI RR   
Sbjct: 65  VCREIR-KKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      +V   L VN+    ++V G  +    KE +++  L+   N   T++  L+ 
Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + IDV + +LR+KL      K  ++TVWG GY    N
Sbjct: 184 VWGFEYYGDSRTIDVHVKRLREKLEGV-SDKWALKTVWGVGYKFEVN 229


>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
 gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
          Length = 224

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+ +L   I   LK E ++V   + G D +E     E+D +I+D+ + ++ G 
Sbjct: 1   MKILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   ++ PV  L+ +   EDKV+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  ++ +   DL ++  A TV   G  I LT KE+ ++E L   +   L+++  L H 
Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   E    ++DV+I  LRKK+ +       + TV G GYVL+E
Sbjct: 181 WDFSYEGASNMVDVYIKTLRKKIDHDF-EPKLLHTVRGAGYVLKE 224


>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 239

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+  + G   ++L +  E D ++LD+ L D+ GF 
Sbjct: 7   RLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLPDMDGFT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 67  VTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHP 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++   DL ++ D+  V   G  + L+  E++++  L L     L+K   L+H++
Sbjct: 127 TPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-----GGKNYIETVWGRGYVLRENAK 226
                 +  I++ +I  LR+K+ NA        +  I T  G GY+LR+  K
Sbjct: 187 QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLLRQPPK 238


>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 218

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 235

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++EDD+ +A  I+  L  E F  ++   G + I   +  + D IILD  L  + G 
Sbjct: 1   MNILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWMLPGLDGL 60

Query: 61  EVLRALRVA----KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           E+   +R           + +L+      D++ GL +GADDY++KPF+  ELVAR+RA++
Sbjct: 61  ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120

Query: 117 RRS--RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS  +G    +  T   +++ D +             + LT  E++++           
Sbjct: 121 RRSLRQGGQTRIYQTASFTIDPDQRCARRHYADTPEQTLDLTALEFELLSTFVSYPGRVW 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +   ++ L+      + +++D  + +LRKK+   +    +I+TV G GY   +
Sbjct: 181 NRSQLIDKLWGSDFFGDDRVVDTHVARLRKKIEPDSSNPTFIKTVIGVGYKFED 234


>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 229

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 6/230 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+I+DD+ +   +   L  E + V     G +G+      E D ++LD+ +  + 
Sbjct: 1   MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFEV R +R    + PV +L+    +E++V+GL  GADDY+ KPF  EEL+AR+RA++RR
Sbjct: 61  GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +    +   DL ++ +++ V   G R+ LT KE++++ L        L++++ +
Sbjct: 121 KTEQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIM 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E  +++V+I  LR+K     GGK  I T+ G GY+LR + 
Sbjct: 181 DKIWGYDYSGESNVLEVYIAMLRQKTEQD-GGKRLIRTIRGAGYILRGDV 229


>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 229

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 234

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           I +IEDD+A+   +E  L  E + V V   G++G+   +  +  FD +++DL +  I G 
Sbjct: 8   IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKIDGM 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R      P+ I+S   S  DK  GL  GADDYI KPF+  EL AR++AI+RR+ 
Sbjct: 68  EVIRRIRA-YSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRAT 126

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +A      + +  GDL ++ D+  V  Q   I LT KE++++ L +   N   TK    
Sbjct: 127 QYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQIY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     +  +I+V + +LR K+ +      YI+T+WG GY   
Sbjct: 187 AKVWNDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYKWE 233


>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
 gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   ++  L+ ++  V     G + +E  K  ++D ++LD+ +    G E
Sbjct: 10  KVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ AR++AI+RRS  
Sbjct: 70  VCQMVREFS-NVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSGK 128

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++    + V LD++ V V G  ++LT KE+ ++ELL    N   ++   L+
Sbjct: 129 KQAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLS 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +DV + +LR+K+    G   YI T WG GY  +
Sbjct: 189 TIWGDSYPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFFK 234


>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
           RKU-1]
 gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
           [Thermotoga petrophila RKU-1]
          Length = 223

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 91/228 (39%), Positives = 135/228 (59%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+
Sbjct: 1   MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DE    ++   I  LRKK+ +    +  I TV G GYV    A+DE
Sbjct: 181 FDDEVFSDVLRSHIKNLRKKV-DKGFKRKIIHTVRGIGYV----ARDE 223


>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 242

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIPG 59
           +L++EDD ++  ++  +L++E F V     G   + L         D I+LDL L  + G
Sbjct: 15  LLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGG 74

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +TP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RRS
Sbjct: 75  LDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 134

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                S          +L +      V   G  + L+ KEY+++EL         +++  
Sbjct: 135 SQSETSAPQPHSFTHANLCLFPSECRVTRDGMDLTLSPKEYKILELFIQNPKRVWSRDQL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++      + K +DV I  LR+K+         I TV G GY  
Sbjct: 195 LEKIWGVDFIGDTKTVDVHIRWLREKVEQEPSSPQLILTVRGFGYRF 241


>gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum
           JL354]
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 156/227 (68%), Positives = 192/227 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+ + A +IELML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPSTAKAIELMLTTEGFNVYSTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVAK+ TPV ILSG+S ++ KVR    GADDY++KPF++EELVARI A+VRRS+
Sbjct: 61  DVLKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV   R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKLS+A  G+NYIETVWGRGYVLR+  ++
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSHACDGENYIETVWGRGYVLRDPNEE 227


>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
 gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
           scabiei 87.22]
          Length = 241

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 19  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 79  VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 199 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241


>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +E       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLRQ-KSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGE 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G + ++++   V V+G  + L  KE++++E+L       LT+   ++ +
Sbjct: 122 DEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   YI TV G GY    
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGYKFEP 226


>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
 gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
 gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
           14580]
 gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
 gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
          Length = 240

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +   + G++ I+     ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 68  VCRQVRDKK-ATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A++++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGYKFE 236


>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
           [Verrucosispora maris AB-18-032]
 gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
           protein [Verrucosispora maris AB-18-032]
          Length = 259

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD ++     L L+   F V     G  G+   +    D I+LD+ L  + G +
Sbjct: 37  RVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLDGLQ 96

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +  + P+ +L+  +   D V GL+ GADDY+ KPF+  ELVAR+R+++RR+  
Sbjct: 97  VCREIRRSN-AVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVA 155

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G L ++  A      GH + LT  E++++  L+ R     T+E+ L  +++
Sbjct: 156 APEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVWE 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +++DV + +LR K+ +       I TV G GY L
Sbjct: 216 QGYLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256


>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
 gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
          Length = 234

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED + +A+ I + L+     V      +D  +  +   F  I+LDL L D+ G +
Sbjct: 4   HVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+     P+ +L+  +   D+V+GL++GADDY++KPF+  EL AR++A++RRS  
Sbjct: 64  ICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRRSNV 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A        I   DL ++    +V      I LT  E+ ++  L+       ++E  L 
Sbjct: 124 QAIKNVEPEQIKIADLVIDQATHSVYRNKQLITLTSTEFSLLAFLAKSPGRVYSREQLLA 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D  ++     ++  + +LR K+        YI+TVWG GY L 
Sbjct: 184 EVWDYHNDCYEHTVNSHMNRLRNKIEPNPAKPTYIKTVWGVGYKLE 229


>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 226

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++LKSE F  +    G+   +  +    D ++LDL L    G E
Sbjct: 4   RILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+  S   D V GL+SGADDY+ KPF  +EL+AR+RA +R S  
Sbjct: 64  VCREIREIS-SVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  L+  GD+ V++   TV   G  I LT  E+ ++  L+ +     ++E  L  ++  
Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+       + I TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGYK 221


>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 229

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPG 59
           +IL+ +D+  +   I L LK ENF V   + G   +   +     F   ++D+ + ++ G
Sbjct: 7   KILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F + R +R      PV  ++      +++ G + GADDYI KPF+  E+ AR++A+++R+
Sbjct: 67  FALCREIRSFS-DKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRA 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + LI TG + +N++ + V V G +I+LT KE+ ++  L   K   L++E     +
Sbjct: 126 NPVQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + + +D  I KLR+KL   AG +  I+T+WG GY    N
Sbjct: 186 WDYDYFGDQRTVDTHIKKLREKLGEKAGNE--IKTIWGVGYKFEVN 229


>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 230

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A   +  L+  NF V +   G+ G+E  K   ++ IILDL L +I GFE
Sbjct: 3   KILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRKIK-NTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  +    I    L++N  ++ V V G     T KE+ ++  L+   +   +KE  
Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++      E+  + V I K+R+K+        YIETVWG GY  R
Sbjct: 182 FDKIWGMDSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRFR 229


>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  +FD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +S++  GDL+VN D + V V+G  + LT KE+ +++LL+  K   L+     
Sbjct: 123 YNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E +   +   GE  +     ++ + ++LDL L  I G++
Sbjct: 6   RILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TPV +LS    + DKV GL+ GADDY+ KPF+ +EL+AR++A++RR   
Sbjct: 66  VCREIRA-KSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    +   DL VN+    V   G  + +  KE +++  LS   N   T+E
Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L++++      + + +DV I +LR+K+ +       I TVWG GY   
Sbjct: 185 QLLDNIWGYEYIGDTRTVDVHIKRLREKIHDN--QFWSISTVWGIGYKFE 232


>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 286

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  T  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 53  RILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGLE 112

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 113 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 172

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 173 LARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDLL 232

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 233 NAVWGYQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278


>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ ++     E D  ILD+ L    G  
Sbjct: 4   KILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGASGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+   S  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIR-DKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N++     +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K++       YI+TVWG GY + +
Sbjct: 183 HEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKIEK 231


>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 225

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 130/224 (58%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++L+IED++ +   ++  L++  + V V + G+ G+E       D   I+LD+ L DI G
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+
Sbjct: 63  WSLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRT 121

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            G ++         +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN 
Sbjct: 122 YGASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 VWGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 222


>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 242

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 125/237 (52%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR---ENAKD 227
             ++    E   + +++DV I +LR KL +       I T  G GY+ +   E  +D
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQRILEPGED 242


>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 218

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
 gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 218

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+    G   ++L +  E D ++LD+ L D+ GF 
Sbjct: 8   RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TPV  L+     +DKV+GL  G DDY++KPF+ EE+VARIRA++RR+ G
Sbjct: 68  VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSG 127

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  GDL ++ D+  V   G  + L+  E++++  L L     L+K   L+H+
Sbjct: 128 SLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN------AAGGKNYIETVWGRGYVLREN 224
           +      +  I++ +I  LR+K+ N             I T  G GY+LR  
Sbjct: 188 WQYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLLRAP 239


>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
 gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
           Rock3-17]
          Length = 247

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E     ++D I+LD+ +    G E
Sbjct: 15  RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 75  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +A     I TVWG GY   
Sbjct: 194 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFE 243


>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LD  L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
 gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
          Length = 224

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +   +   L+ E F V     G  G+ +      D ++LDL L  + G +
Sbjct: 3   RILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDGCD 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L+   ++   PV +L+      D++ GL  GADDY+ KPF+  ELV RIRAI+RR 
Sbjct: 63  VCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRRG 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           SR    + +  G L ++++A  V + G  + LT  E++++E L        T+E  LN +
Sbjct: 123 SRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E   + +D  + +LR KL   A     +ETV G GY LR
Sbjct: 183 WGYSFEGYARTVDTHVRRLRAKLGEEAAA---LETVRGVGYRLR 223


>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQ-HSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT++  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +       I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231


>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 233

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 118/232 (50%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D++ +A  + + L+ E ++V     G++ I + +    D +ILD+ +  +
Sbjct: 1   MKTISILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R    + P+  LS  +S  DKV GL  GADDYI+KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRRIRETH-NMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLR 119

Query: 118 R--------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R        +    ++ +    L ++L+ +TV + G  I LT KE+ ++ LL+       
Sbjct: 120 RFMKLNQPRTAVDPKTRLDYRGLVISLEQRTVTLYGENIELTPKEFDILYLLASHPKKVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + E     ++          + V I  LRKKL        +I+TVWG GY  
Sbjct: 180 SVENIFKQVWGEAYFEGANTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYAF 231


>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
           [Campylobacter concisus 13826]
 gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
           13826]
          Length = 219

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   LK   ++V     GE+ ++      +D I+LDL +  + G 
Sbjct: 1   MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+  R AK+ TPV IL+    ++D V+GL +GADDY+ KPF+ +EL+AR+R ++RR+ 
Sbjct: 61  TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S I  G+L ++L  K+VE  G +I LTGKEY+++E L L K   LT++    H++D
Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   +IDV I  +RKKL         I+T  G GYV+++
Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA----IQTKRGLGYVVKD 219


>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+ ++     + L+ E F V     G   +E+ K    D +ILD+ L ++ GFEV
Sbjct: 6   ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+      DK+ GL+ GADDY++KPFN  ELVAR++AI+RR+R  
Sbjct: 66  CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRTRHQ 125

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q++I  G++ V+     V    + I L  +E++++ +L+      L++E  L   +
Sbjct: 126 THEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLEKAW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV I +LR+KL+++      IETV G GY L 
Sbjct: 186 GFDFYGQTRTVDVHIAQLRRKLADSG---VTIETVTGVGYKLV 225


>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
 gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           Rock3-44]
          Length = 230

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F + +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  I  GDL ++    TV     ++ LT KE+++++L    +N   TK    N
Sbjct: 123 YSATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWSEEYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKLE 228


>gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 236

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 78/235 (33%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L  ED+  +A  +++ LK + F V   D G+   E     E+D I+LD+ +    G 
Sbjct: 1   MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    +TPV +L+    ++D+++GL  GADDYI+KPF  EEL+ARI A+VRRS 
Sbjct: 61  FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH------------RIHLTGKEYQMIELLSLRKNTT 168
           G   +L+  G   ++   +TV  Q               + LT +E+ ++E L       
Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            T+   L H++     P   ++DV I +LRKK+ +  G + +IE+V G GY  R+
Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKI-DMKGNERWIESVRGVGYRFRQ 234


>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 229

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++  ++L L+ E +   V   G+D +   +   +D ++LD+ +  + G E
Sbjct: 4   RILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR +R A+  TP+ +L+    + DKV GL  GA+DYI+KPF  EEL+AR+R  +R+   
Sbjct: 64  VLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   DL V+L A  V   G +I LT +E+ ++  L   KN  LT+E  +  ++
Sbjct: 124 AANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +  ++DV+I  LR+K+         I+TV G GY ++E+ +
Sbjct: 184 GYDYFGDTNVVDVYIRYLRQKVDKNFEIP-IIQTVRGVGYTIKEDKQ 229


>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++  L  E F+ ++ +  E G+++ +  + D +ILD+ L D  G+E
Sbjct: 5   KVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDEDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+  LS      DK+ GL+ GADDYI+KPF+  E+VARI+A++RR   
Sbjct: 65  FCQKIRPE-YDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNK 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A++  +I  G+L +N +   V  QG +I LT KE+ ++  L+        +E  L  ++
Sbjct: 124 AAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +V+ +D  I  LRKKL + A     +ETVWG GY   +   +E
Sbjct: 184 GYDYYGDVRTVDTHIKSLRKKLGDKAAEA--VETVWGVGYKFDDQKLEE 230


>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 236

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  I L L  E ++  +   GE  ++    ++ + I+LDL L  + G++
Sbjct: 6   RILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRTTS-QVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +   +L VNL   +V  +GH + +  KE +++  L+   N   T+
Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L+H++      + + +DV I +LR+K+ +       + TVWG GY   
Sbjct: 185 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIRDDENWA--LSTVWGIGYKFE 233


>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
           lugdunensis HKU09-01]
 gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 241

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 130/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+FN++    G++  EL   + +  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 SAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +      I+TVWG GY     A DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEVRASDEPT 240


>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
          Length = 219

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 133/221 (60%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L   +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I    ++++ +A  V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 219


>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
          Length = 218

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL     G NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGE---GGNYIQTVWGVGYKFE 217


>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
 gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 230

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+  NF V V + G+ G++     +FD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTD 56
           MR   +L+++D + +  ++ + L  E ++V + + G   ++L +  +  D I+LDL L  
Sbjct: 5   MRHQTVLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPH 64

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G ++ R LR    + P+ +L+   +  D+V GL+ GADDY+ KPF   EL+AR RA++
Sbjct: 65  LNGLDLCRLLRREGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVL 124

Query: 117 RRSR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RR          +++  GDL +N     V V+   + L+ KE++++EL         ++E
Sbjct: 125 RRHTRTQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSRE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 185 QLIERVWGPDFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGYRF 233


>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 221

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+  L  E ++V     GE+G++L     +D +ILD+ +  I G+ 
Sbjct: 3   KILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMPKIDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R      P+ +L+  +   D++ G +   D+Y+ KPFN + LVA+++A++RR  +
Sbjct: 63  VCRKIREES-QVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL ++   + V++    + LT KEY ++      K   L++E  LN ++ 
Sbjct: 122 IVDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +      +I+TV G GY    +
Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDN-----FIQTVRGFGYKFEGD 220


>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actG]
 gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
           SA3_actF]
          Length = 225

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/219 (33%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 64  VCRLIRAESG-VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221


>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 226

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  +   L+ E +   VT  G +G+E  +    D I+LDL L  + G E
Sbjct: 3   KVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGTE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V  ALR +  +   PV +L+      D+V G + GADDYI KPF+  EL+ RIRAI+RRS
Sbjct: 63  VCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRS 122

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +    I  G + ++  +  V V G  I LT  EY+++  L+      + +E+ L 
Sbjct: 123 SQEPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +D  + +LR KL +A      I+TV G GY L E
Sbjct: 183 DVWGYNFVGDTRTVDTHVTRLRNKLGDAG---EMIKTVRGFGYKLEE 226


>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
 gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
 gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
 gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
 gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
 gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
 gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
 gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
 gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 231

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 222

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  ++  ++  L+ E F V +   G+ G+++    E+D +I+D  +  I G 
Sbjct: 1   MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A  S P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  +RR+ 
Sbjct: 61  EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  G ++VN     V  +   I LT KE+ ++E L+  K+   T+   + H++D
Sbjct: 121 PESDT-ITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV+I  LRKKL +  G  N I+T+ G GY++RE+
Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DIVGCGNIIQTIRGVGYIIRES 222


>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  279 bits (714), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
 gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
          Length = 238

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++D+  +   +++ L+ E + +     G + IE     ++D I+LDL +  I G E
Sbjct: 6   RLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  ACKQIREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++LIV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLREVWHYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFE 234


>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 237

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     G + +      + D ++LDL L  + G E
Sbjct: 3   RILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+      DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRELRSRG-DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121

Query: 122 HAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            + S             +  G ++++++   V V+G  +    KE+ ++E L       L
Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           T+   ++ ++      + K +DV I ++R K+    G    I TV G GY   +
Sbjct: 182 TRGQLIDRVWGSDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKFAD 235


>gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 228

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD+++A  ++  L+ E+F V     GE G        +  +++DL L  + GF
Sbjct: 1   MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
            +   +R +    P+ ++S   +  DKV+    GADDY++KPF+  EL AR++A +R   
Sbjct: 61  ALCEKIRASS-EVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYE 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    +  +   D+ +++  + V  +G +I LT KE++++  L+       TKE     
Sbjct: 120 RSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++G    + + + V +  +R KL +      YIETVWG GY  
Sbjct: 180 VWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222


>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
 gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
 gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
 gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
 gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
 gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
           Sterne]
 gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
 gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
 gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
 gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
 gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
 gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
 gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
           Tsiankovskii-I]
 gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
 gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
 gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
 gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
 gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
           684]
 gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
 gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
 gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
 gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
 gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
 gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
 gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 238

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 220

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V ++G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKEA 220


>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
 gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
           PC184]
          Length = 282

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 49  RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 108

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 109 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 168

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    L+++  A+   V G R+ LT +E+ ++   +       ++   L
Sbjct: 169 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 228

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 229 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 282


>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
 gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 234

 Score =  278 bits (713), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++++   +E +LK E + +   D GE  +E  +    D +ILD+ L  I G+E
Sbjct: 6   KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    I DK  G   GADDY+ KPF+  EL  R++A++RRS  
Sbjct: 66  VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             QS         I  G+L +N ++  V V+G  ++LT KE++++  ++   +   T+E 
Sbjct: 125 KEQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++      +   I VFI KLR+K+        YI+TVWG GY  
Sbjct: 185 LFAHMWGDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 226

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G++ +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKQLRQRS-AVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G + ++++   V V G  + L  KE+ ++E L       LT+   ++ +
Sbjct: 122 AEDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR KL        Y+ TV G GY   
Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGYKFE 225


>gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
 gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. NRRL B-14911]
          Length = 234

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++DD  + +  +  L  E F +     G + ++L    E D IILD+ L D+ GFEV
Sbjct: 6   ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+  LSG     D++ G + G DDYI+KPF+   LVA++++ +RR +  
Sbjct: 66  CRIIRT-KTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKEL 124

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + S         ++ G+L+++ D   V  +G  I L  KE+Q++  L+       + E  
Sbjct: 125 SGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +++ + V I  LRKK+        YI TV G GY  
Sbjct: 185 FDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231


>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 229

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V +   G + +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    PV +LS  S + D+VRGL  GADDY++KPF+ +EL ARIRA++RR  
Sbjct: 61  EVCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++   +T    G  + L+ KE+ ++E L       L++   L H++D
Sbjct: 121 HERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++D +I  LR+K+    G     ETV G GY L
Sbjct: 181 FAYDGTSNVVDQYIAYLRRKIDRPFGISQL-ETVRGAGYRL 220


>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
 gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
           hofstadii F0254]
          Length = 235

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +   I   L+ EN++V     G++ ++     E+D +ILD+ L  + GF
Sbjct: 8   MRILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+   S++D+V+GL  GADDY+ KPF+ EEL+ARIR I+R++ 
Sbjct: 68  EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + S   +    +L+V+ +  TV     RI L+ KE+ ++E +   K   ++K+    H
Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +YD   E    +I+V I  LRKK+         I T+ G GYVL+E 
Sbjct: 188 IYDFDSEINSNVIEVHIRLLRKKIDTDF-TPKLIHTIRGVGYVLKEE 233


>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +A  I+  L+ E F+   +  G + + + +    D IILDL +  + G 
Sbjct: 1   MDILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMIPGLDGL 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S  +G    +  T    V++D +T   Q        + LT  E+ ++            +
Sbjct: 121 SLRQGGQNQVSRTQHFIVDVDQRTASRQIDAHQAEALDLTTLEFNLLSTFVSNPGRVWNR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++ L+      + +++D  + +LRKK+       ++I+TV G GY   ++ 
Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFEDSP 234


>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 232

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   +   L+ E + V     GE+ + +    + D +ILD+ +  + G E 
Sbjct: 5   ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLDGLEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + ++ A    P+ ILS    + DK+ G + G DDY +KPF+  EL  R++A++RRS+G 
Sbjct: 65  CQKIKGA-ADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKGV 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q ++    + + L  + V +    I LT KE+ ++ L++   N   ++   L  
Sbjct: 124 TDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLEQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++ R E +   + V I +LR+K+         I+TVWG GY      +
Sbjct: 184 IWESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFEAPKQ 232


>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 224

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V   G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL         I+TV G GY+L   A D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVD-----IIQTVRGLGYLLSPPAAD 222


>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
 gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock1-4]
 gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           mycoides Rock3-17]
 gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
           pseudomycoides DSM 12442]
          Length = 230

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F + +   GE+G+       FD IILD+ +  + G E
Sbjct: 4   HILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 64  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  I  GDL ++L   TV+ +  ++ LT KE+++++L    +N   TK    N
Sbjct: 123 YSATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 183 LIWNEEYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKLE 228


>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12D]
 gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  + + L+ E + V     G  G    +   +DA++LDL L  I G E
Sbjct: 6   RVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  RV    TP+ I+S  S+   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRRTDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L +   A+ V V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGSLTLGNLEIEPLAREVRVDGKPIELTPREFDLLHFFARHPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + +     ++  I +LR K+         I TVWGRGY L
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRAKVEVDPAQPRRILTVWGRGYKL 231


>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
 gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
 gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 223

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
           [Mycobacterium avium 104]
 gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
          Length = 228

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G + +++      DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    +   DL+++   + V     RI LT  E+ ++E+L       LT+   L  
Sbjct: 121 PEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Leuconostoc gasicomitatum LMG 18811]
 gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Leuconostoc gasicomitatum LMG 18811]
          Length = 229

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A++  ++  L+   + V +   G+   EL     FDAI+LDL L  + G  
Sbjct: 3   KILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  KI+TPV +++      D+V GL+ GADDYI+KPF+  E++AR++A++RRS+ 
Sbjct: 63  VLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQT 122

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   D+ ++ + K V   G  + LT +EY+++   S R    + +E  L 
Sbjct: 123 ERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETILT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E +++D+ I  LR+K+ N       ++TV G GY + 
Sbjct: 183 AVWGYEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGYTMV 228


>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
          Length = 233

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ LK+E F VY    G++ +E  +  + D  ILD+ L DI GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDIDGFHI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   +
Sbjct: 65  CQKIREKYY-YPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             S               L +N +     + G  + LT  E+ ++  L   +   +  E 
Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++  +       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233


>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
 gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 133/224 (59%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  + L L+ E + V V + G DG++  +   FD ++LD+ L ++ G E
Sbjct: 5   KILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VLR +R    +TP+ +++   S+ DKV GL  GA+DYI+KPF+ EEL+ARIRA +R    
Sbjct: 65  VLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIH 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++   ++ +   DL+VN   + ++  G  + LT +E+ ++  L   +   LT++  L  +
Sbjct: 125 AQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+ +    K  I TV G GYV++
Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227


>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 250

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 28  RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 88  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 208 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 250


>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 227

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V V   G  G++L    E+D +++D  +  I G 
Sbjct: 1   MRLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+  L+   +IED V GL +GA+DYI KPF  EEL+ARIR  +RR R
Sbjct: 61  EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRR-R 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S + TG+L+V+  +     +   + LT KE+ ++E L   K    T+   + H++D
Sbjct: 120 GSESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +IDV+I  LRKKL +AAG ++ I+T+ G GY++R+   +
Sbjct: 180 MHFDSDTSVIDVYINFLRKKL-DAAGCRDLIQTIRGVGYIIRDEGGE 225


>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L  ++    +   F V     G  G+E+ +    D IILD+ L  I GF V
Sbjct: 4   ILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLPGIDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+   + + P+ +L+ +     ++ GL+ GA DY+ KPF+  EL+AR+RAI+R +   
Sbjct: 64  CRAV-AKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQ 122

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q    +++  G + ++ +++ V  Q   + L+ KE+ ++  L       L++++ L  +
Sbjct: 123 RQAPTSNVLSIGPVQLDRNSRRVWYQDREVELSQKEFDLLACLMHNAGVALSRDLLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +        + IDV +  LR+KL         I TV G GY  ++ + D
Sbjct: 183 WGNDFLGSNRTIDVHVRWLREKLEPDPANPVLIRTVRGIGYCFQDPSFD 231


>gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 227

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED++ +A  I   L++++FNV     G  G +       D IILD+ L    G 
Sbjct: 1   MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR+LR   + TP+ +L+  + + D+V+GL  GADDY++KPF  EEL ARI+A++RR  
Sbjct: 61  DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G L ++   +++  QG  + LT +E+ ++E L    N  LT+   L H++ 
Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGGKNYIETVWGRGYVL 221
              +P   ++DV I ++R K   L  A      IE++ G GY L
Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224


>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           ATCC 824]
 gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
           EA 2018]
          Length = 233

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   I + L +E FNV   + G + +E+ K  E   ++LD+ +  + G   
Sbjct: 6   VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K +TP+ +LS      DK+ GL +GADDYISKPFN  EL+AR+++ +RR    
Sbjct: 66  CMKIREDK-NTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + I  G++++N D   V++    + LT +E+ ++ LLS  K    + E    
Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++          + V I K+R+K+        YI+TVWG GY + +N
Sbjct: 185 SVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232


>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 229

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +   L+ E + V V D G DG+ +   +  D ++LDL L  + G E
Sbjct: 3   RILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S PV +L+      DKV GL+ GADDY++KP++  EL+ARI+A++RR   
Sbjct: 63  VCREIRRTS-SVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++     +    L ++++   VEV+G  + L  KE++++E+L    +  LT+   ++ 
Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      + K +DV + +LR K+ +      ++ TV G GY     A
Sbjct: 182 VWGANYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFESGA 229


>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxidans DMS010]
 gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylophaga thiooxydans DMS010]
          Length = 230

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+   +   LK   F       GE G++  K  + D I+LD  L  I G E 
Sbjct: 5   VLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGIDGIEF 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +   + PV +L+     ED V+GL  GADDY++KPF+  EL+ARIRA++RR +
Sbjct: 65  IRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRCQ 124

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      + +G+L ++  +  V V   RI L   E++++            +   L++
Sbjct: 125 PDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLDY 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I +LRK L  ++G  + I+TV G GY  
Sbjct: 185 VWGDTVYIEERTVDVHIRRLRKALE-SSGHDHLIQTVRGVGYRF 227


>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A  ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+ +      ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 242

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +         +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 231

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + ++L      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+  
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTTP 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DLS++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 124 DDGAGESAAMTFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRILEE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 VWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231


>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 228

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 2/225 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  +++ L+ E +NV +   G +G+       +D IILDL L  + GF V
Sbjct: 5   ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R  K S PV ILS    I+DKV GL  GADDY++KPF+ EEL+ARIR  +R++   
Sbjct: 65  LKEIR-KKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIKA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I    ++++L    V   G +I LT KE+ +++ L +     LT+E  L +++   
Sbjct: 124 NTKKISYDGITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWGYN 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E  I+DV+I  LR K+      K  I+T+ G GY LR+   +
Sbjct: 184 YIGETNIVDVYIRYLRSKIDEPFSNK-LIQTIRGVGYSLRKEKNE 227


>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
 gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
          Length = 231

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 242

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + +     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L +   A+ V V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-AKDE 228
           N ++  + +     ++  I +LR K+         I TVWGRGY L    A DE
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKLSPTGAGDE 239


>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 231

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 127/226 (56%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IEDD  +   ++L L+ E + V +   GE G+     ++ D I+LD+ L  I G+
Sbjct: 5   INVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPKIDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  + + PV +++G     DK++GL+ GADDY+ KPF+ +E++AR++A++RR+ 
Sbjct: 65  EVCREIRKDR-NVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTN 123

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      I    L +N+   T+  +   I L  KE +++  L   KN   T++  L+ +
Sbjct: 124 PYFGTNEEIALFGLKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + IDV I ++R+K+     G+  ++T+ G GY    N
Sbjct: 184 WGYDYEGDPRTIDVHIKRIREKIGE-GSGEWSLKTIRGVGYKFEVN 228


>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 248

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G   +      E D ++LD+ L D+ GF 
Sbjct: 15  RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE+VARIRAI+RR+  
Sbjct: 75  VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTHA 134

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL ++ DA  V   G  + L+  E++++  L L     ++K   L+H+
Sbjct: 135 TQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 194

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLREN 224
           ++     +  I++ +I  LR+K   +  A G      I+T  G GY+LRE 
Sbjct: 195 WEYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYMLREP 245


>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 132/230 (57%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  L   +  +L    + V     GEDG+ L +   +DAI+LDLGL  + G 
Sbjct: 1   MRALIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A +S PV IL+      +KV G  +GADDY++KPF+ EEL+AR+RA+ RR+ 
Sbjct: 61  TVLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S ++ GDLS++     V +    I LT  E++M+  L   ++  +++   + H+YD
Sbjct: 121 GHSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VF+ +LRKK+ +       IETV G GY L +  + E+ 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGSN-----RIETVRGLGYRLVDPGETESS 225


>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
 gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
           protein [Reinekea sp. MED297]
          Length = 224

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ LA  I   L    +       G+D +      ++D IILD  L  + G 
Sbjct: 1   MKILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +LR LR +  + PV ILS +S ++ +V GL +GADDY++KPF   EL+AR++ ++RR  
Sbjct: 61  TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     +++ TG + ++L  + V VQG  I    +E++++E L       +++ M L ++
Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  ++DV I +LR+KL +     + I TV G GYV  
Sbjct: 181 WDYHFDPQTNVVDVHISRLRQKL-DHGQETSVIRTVRGAGYVFE 223


>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ++   +E  L  E F V +   GE+ +E     ++D ++LD+ L  I G + 
Sbjct: 5   ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L+ +R  K   PV I+S      DK  GL  GADDYI+KPF+  EL AR++A +RR    
Sbjct: 65  LKKIRE-KSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAY 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I   +L ++LD  TV   G  I LT KE Q+++L         TK+   
Sbjct: 124 VIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  +I+V + +LR K+ +      YI+T+WG GY L E
Sbjct: 184 TSVWNDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRLGE 231


>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
 gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
           10876]
          Length = 238

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
           palustris CGA009]
 gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 224

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL         I+TV G GY+L   A D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLGVD-----IIQTVRGLGYLLSPPAAD 222


>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 227

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E ++V V + G DG+        D ++LDL L  + G +
Sbjct: 3   RILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR    S PV +L+   S  DKV GL+ GADDY++KP++  EL+AR++A++RR   
Sbjct: 63  VCRALRQRS-SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I  G + ++++  TV V G    L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        +I TV G GY   
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGYKFE 225


>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
          Length = 236

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  + + L  E ++V     G  G+   +   + A++LDL L  + G E
Sbjct: 6   RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      ++  G LS++  A+   V G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++  R +     ++  I +LR K+         I TVWGRGY L E+A
Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235


>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 229

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LD+ L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR  K S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKQLRA-KSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       +  G + ++++   V V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + K +DV + +LR K+    G   ++ TV G GY L E
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229


>gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 234

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 147/228 (64%), Positives = 186/228 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A SIELML  + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A++ TP+ +LSG++ +E KVR L  GADDY++KPF++EEL+ARI+A+VRRS+
Sbjct: 61  EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD+KTVE+    +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVF+CKLRKKL+ A   +NYIETVWGRGY+LRE    E
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILREAEHAE 228


>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +   LK +  +V+V D G   +++    + D +ILD+ + +  G+ 
Sbjct: 6   KILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPEYDGWA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D++ G + GAD+Y++KPF+ + LVAR++A++RR   
Sbjct: 66  VCREIRKTS-HVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAE 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H   +I    L ++   + V V G  + L+ KE++++  L   +   L ++  LN ++D 
Sbjct: 125 HKNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWDY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +D  I  LR KL        +I+T+ G GY   
Sbjct: 185 NYFGDARTVDTHIKNLRHKLGAKGL---FIKTIRGLGYKFE 222


>gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii]
          Length = 224

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ LAH ++  L   N+ V +   G DG        +D ++LD+ L  I GF
Sbjct: 1   MRILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K  TPV +L+    +ED+VRGL++GADDY+ KPF   EL+ARI+A++RR R
Sbjct: 61  WILKDLRETK-DTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  GDL ++L  +     G R+ LT KE+ ++ LL  R+   L++ M    ++D
Sbjct: 120 GQESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+V + +LR K+ +    +  + TV G GYVL E  +
Sbjct: 180 MNFDSDTNAIEVAVRRLRAKI-DDPFDRRLLHTVRGMGYVLEERGE 224


>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 227

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L++E   V     G   +   +    D ++LD+ L  I G E
Sbjct: 6   RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDY+ KPF  +EL+AR+RA +RR   
Sbjct: 66  VCRRIRAESG-VPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDD 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL +++   +V+ +G  + LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 125 VEPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 185 RHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYR 223


>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
 gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 238

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   + L +  ++DA+ILDL L  + G E
Sbjct: 6   QILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR + 
Sbjct: 66  ICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQA 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I    L+++   ++V++ G  + LT +E++++   +       ++   L  
Sbjct: 126 MGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLEQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  + E     ++  I +LR K+   A     I TVWG+GY   E
Sbjct: 186 VWGYQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAE 231


>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E + +Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 16  ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 76  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 134

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 135 NATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 195 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 242


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 132/230 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+  A+++  +L ++N+ V V   G    EL + Y++D I+LD+ L  + G 
Sbjct: 1   MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R +    P+ +L+G  S  +K  GL +GADDY+ KPF++EELVAR+RA++RR  
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ ++  G+L ++  +  V    + + LT KEY ++EL         +  M L H++ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             D P  + +   I  LR KL NA    + +ETV+G GY L+   +++  
Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGS 230



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L ++DD  +   ++ +L      V   D      E  +    D +ILD+ +    G E
Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+  L+     E   +    GADD++SKP    ELV RI   + R 
Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLERV 499

Query: 120 R 120
           +
Sbjct: 500 K 500



 Score = 79.1 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD  +   ++ +L+   + V+    G++ I        D I+LDL +  + G+E 
Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438

Query: 63   LRALRVAKIS--TPVCILS 79
            +  L+ +  +   P+ I S
Sbjct: 1439 MAMLKESTETKHIPIVICS 1457



 Score = 57.2 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 2    RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            RIL++EDD  LA     + +  +   +    G + I L +    D +ILDL L +  GF 
Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1559

Query: 62   VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118
            V+  L+  +   + PV + S     E + + L+ G  ++++K     +E   R+  +++R
Sbjct: 1560 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1619


>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
 gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
          Length = 225

 Score =  278 bits (713), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A+ +   L  E F V V   G  G+E  +    D ++LDL L  I G E
Sbjct: 4   RILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGIDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ IL+   S+ D+V GL++GADDY+ KPF   EL+ARIR  +RR + 
Sbjct: 64  VARRLRAAS-DVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             QS I    +L+++  A+ + +   RI LT KEY +++L     N  LT+E+  + ++ 
Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  II+V++  LR+KL  A GG   I+TV G GY+LRE+
Sbjct: 183 YDFGGESNIIEVYVRYLRQKLE-AGGGSRVIQTVRGAGYILRED 225


>gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17]
 gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 158/234 (67%), Positives = 194/234 (82%), Gaps = 2/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +IELML SE FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIELMLGSEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LRVA++STPV ILSG++ ++ KVR    GADDY++KPF++EEL+ARI A+VRRS+
Sbjct: 61  DVLKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLDAKTVEV+  R+HLTGKEY M+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           G DEPE+KIIDVFICKLRKKLS A  G+NYIETVWGRGYVLRE   DE  +  +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSLACDGENYIETVWGRGYVLRE--PDEVGQPEQ 232


>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
 gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
           [Treponema succinifaciens DSM 2489]
          Length = 231

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  ++ + +  +  + G+  +ELC+    D +ILDL L D+ G 
Sbjct: 1   MKILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGL 60

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ R +R      + P+ +++  +   D V GL+ GADDY++KPF+ + L+ARI++++RR
Sbjct: 61  DICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRR 120

Query: 119 S----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R ++   I    L ++     V   G  + L+  E+ ++E L+  K    +++  
Sbjct: 121 KGEAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           +N +         + IDV I  +RKK+ ++      +IET+ G GY + E 
Sbjct: 181 INAVKGSSYPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGYRICEE 231


>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 250

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLGL 54
           RIL++ED++ +   I L L+ E +       G   +EL +  E       FD ++LDL L
Sbjct: 20  RILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             I G ++ R LR      P+ ILS  +S  D+V GL+ GADDY++KPF+  ELVAR RA
Sbjct: 80  PQISGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRA 139

Query: 115 IVRR---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RR   +   A  +    D+ +      V V+   I+L+ KE+++++L         ++
Sbjct: 140 LIRRQGFTSLAAAPVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWSR 199

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  +  ++      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 200 EQLIEQIWGPDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249


>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 225

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++   L++E F V     G +G+   +  ++D I+LD+ L  + G+
Sbjct: 1   MRVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A +  P+ +L+      D+   L  GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  DVCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDL+++   + V   G  I LT +E+ ++  L       L+K   +  ++D
Sbjct: 121 PKRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V++  LR+K+ +   G   I+T+ G GY L
Sbjct: 181 LNYDGDENVVEVYVGYLRRKI-DQPFGTTTIQTMRGAGYRL 220


>gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
 gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter
           antarcticus 307]
          Length = 239

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 154/226 (68%), Positives = 184/226 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD + A SIELML   N NVY TDLGE+GI+L K Y++D I+LD+ L D+ G 
Sbjct: 1   MRVLLVEDDPSTAKSIELMLSHANLNVYTTDLGEEGIDLAKLYDYDLILLDINLPDLNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDNHIETVWGRGYVLRDPEP 226


>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
 gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
          Length = 238

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 125/230 (54%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G++ +E     ++D I+LD+ +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R  K +TP+ +L+      ++V+G + G+DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGIREKK-ATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +IV   L+++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KLS  +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGYKFE 234


>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
 gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
           regulator) [Proteus mirabilis ATCC 29906]
          Length = 229

 Score =  278 bits (712), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   I  +L+   F     +  +  +        D ++LD  +    G +
Sbjct: 4   RILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        P+ +L+     EDKV+GL++GADDY+ KPF+ +ELVAR++AI+RR 
Sbjct: 64  VIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRL 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ +I    LS++  +  V  Q   I +   E++++           ++E  LN++
Sbjct: 124 SPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEQD-GHDRMIQTVRGTGYRF 225


>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 237

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 132/230 (57%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I   L+ E ++V + + G++ I + +  + D ++LDL L  + G ++
Sbjct: 9   ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDGIQI 68

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L       + P+ +L+  S   D+V GL+ GADDYI+KPF+  EL+ARIRA++RRS 
Sbjct: 69  CKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRRSE 128

Query: 121 GHAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               S         IV  DL ++++  TV + G  + LT KE++++++LS  +   L++ 
Sbjct: 129 SKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLSRN 188

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L+ ++      E + +DV I  LR+K+ +      YIET+ G GY ++
Sbjct: 189 LLLDEIWGYEYFGETRTVDVHIRHLRRKIGDDKSN-EYIETIRGIGYKMK 237


>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
 gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
          Length = 227

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +A  ++  L+ E F V  T  G+  +        D IILDL L +I G++
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS  
Sbjct: 64  VCREIRKES-HVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ L 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
 gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
          Length = 234

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 12  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 72  VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 192 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 234


>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus salivarius UCC118]
 gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Lactobacillus salivarius UCC118]
 gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
          Length = 233

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   ++  L+   + V   + G D ++     ++D IILDL L  I G E
Sbjct: 3   KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  KI+T + IL+      DK+ GL+ GADDY++KPF+  E+VAR++A+ RR   
Sbjct: 63  ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S   +++    G+  VNLD+  +     + I LT KE++++     +K   L +E 
Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LN+++      + +++D+ +  LR+K+        +++TV G GY   + 
Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFEDE 233


>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 228

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A  ++  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+ +      ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227


>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
 gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
          Length = 226

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E + V V + G D +        D ++LDL L  + G +
Sbjct: 3   RILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLSGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR    + PV +L+   S  DKV GL+ GADDY++KP++  EL+ARI+A++RR   
Sbjct: 63  VCRALRQRS-NVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +  G + ++++   V V G    L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        +I TV G GY   
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGYKFE 225


>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 231

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 120/230 (52%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD+A+  S+   L    + V   + G + +         DA+++D+ +  + G
Sbjct: 3   MQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRLDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E  + LR      P+ +L+   ++ D+V GL +GADDY+ KPF+ EEL+AR+RA+ RRS
Sbjct: 63  LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  +Q    ++   D++++   + V   G RI LT  E+ +++         L +   LN
Sbjct: 123 RPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V+I  LR+K     G    I TV G GYVLRE A 
Sbjct: 183 EVWGFDFPATANSLEVYIGYLRRKTEQE-GEPRLIHTVRGVGYVLRETAP 231


>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
          Length = 230

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L K   +D I+LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIRE-KSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
 gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F+V V + GE G++     ++D  ILDL L  + GF+
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRNVK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228


>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
          Length = 240

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L+ EN+ +   + G++ I       +D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        ++++V   LS++ DA  V   G  + LT K Y+++  L+   +    +E 
Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240


>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 223

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD  +   ++  L  E + V V + G  G+ + K    + +ILD+ L  + G+E
Sbjct: 4   RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ ILS    +E KV+GL  GADDY+ KPF  EEL+AR++A++RR R 
Sbjct: 64  ICQRFRKDNF-TPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR-RI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +I   DL ++L+A+ V   G+ + LT +E+ ++       N  LT+E  ++ ++  
Sbjct: 122 TANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++V+I  LR+K+ +       I TV G GYVL+E  
Sbjct: 182 DFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223


>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 232

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 2/230 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD AL   +   ++ + F V       +G +       D ++LD+GL D  GF+
Sbjct: 3   RLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +RV    TP+  L+        V GL  G DDYI+KPF   EL++R+RA++RRS  
Sbjct: 63  LCRQIRVENG-TPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
                +V+G ++++ +   V   G  I LT  EY+++ LL   +  TLT+E  L+ L+D 
Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           G D  +   + V+I +LR K+ +      +I TV G GY  +     E C
Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYRWKAEEGGEAC 231


>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 241

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   + V+    G + + L    + D +ILD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR A I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 71  VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKH 130

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG----KNYIETVWGRGYVLREN 224
           +   E +  I++ +I  LR+KL           + I+T  G GY+LR+ 
Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDP 239


>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
 gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
          Length = 231

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D ++LD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 224

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 118/219 (53%), Gaps = 4/219 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED++ +   I+  L++ N+ +     G D +E+ K    D I+LD+ L    G++V + +
Sbjct: 2   EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61

Query: 67  RVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--GH 122
           R    +    + +++  S   DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+    +
Sbjct: 62  RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQN 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +    ++ V+ D   +     ++ LT KE+++IE+L   K   +T+E  L+ ++   
Sbjct: 122 NSRMYKFENIMVDFDQHKLFKDNKKVDLTLKEFELIEILVKNKGKIMTREYLLDKVWGYE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E + IDV I  LRKK+        +IET+ G GY  
Sbjct: 182 YVGETRTIDVHIRHLRKKIELDDKRPKFIETIRGVGYRF 220


>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
 gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
          Length = 230

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD+A+   +   L  E F V   + GE+ ++ C    FD +ILD+ +  + G E
Sbjct: 4   HILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+  
Sbjct: 64  VLKVIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H Q ++V GDL +++   ++   G  + LT KE+ +++L    +N   TKE   
Sbjct: 123 YAGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +  II+V I +LR+K+ +      YI+T+WG GY   
Sbjct: 183 QLIWKDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGYKFE 229


>gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 221

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 2/216 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD +LA  + ++L++E     V   G+  +   + +  D ++LDL L  + G  V 
Sbjct: 2   LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLMLPGMDGMSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R    S P+ +L+  S   D V GL +GADDY++KPF   ELVARI+A +RR+    
Sbjct: 62  RQIRATS-SVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQLG 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           +  +V GD+ ++    TV  +G  + LT  E+ ++  L        T+E+ L  ++    
Sbjct: 121 EP-LVFGDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWGYHH 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             + K+++V + +LR K+ + A   + I TV G GY
Sbjct: 180 PGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGY 215


>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
           14579]
 gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
 gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
 gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
 gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
 gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
 gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
 gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
 gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
 gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
 gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
 gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
 gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
 gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
 gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
 gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           Bt407]
 gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           200]
 gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
           4222]
 gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
 gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 238

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
 gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
          Length = 238

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
 gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
           29176]
          Length = 230

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V V + GE G+      EFD IILDL L  + GFE
Sbjct: 4   RILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQIRGQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 REIWDMESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRFK 229


>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 248

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G+D +++   YE D +ILD+ +    G EV
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRNGLEV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 82  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 141 NASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 248


>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
 gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ EN+ +     G + +E     ++D I+LDL +    G E
Sbjct: 6   KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR  K +TPV +L+      ++V+G ++G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCRELRERK-ATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ +IV   L+++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGYKFE 234


>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 239

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRLDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  R E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239


>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 242

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 230

 Score =  278 bits (712), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + ++       DA+ILD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+  
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTVS 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL+++   + V   G +I LT  E+ ++E+L       LT+   L  +
Sbjct: 124 DDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V+I  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 WGFDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 230


>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 218

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
 gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
          Length = 231

 Score =  278 bits (712), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231


>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 230

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+ ++   L+ E ++V     G  G+E  +  + D +ILD+ L  + GF V
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+ IL+      D++ GL+ GADDY++KPF+  EL+AR+RAI+RRS   
Sbjct: 66  CRILRQES-EVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSERR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  + ++  G L V+  ++        ++L+ KE+ ++  L   ++  L+++M L  ++
Sbjct: 125 IGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I  LR+K+        YI TV G GY     
Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGYRFEAP 229


>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+ ED+  +A  +E+ L+ E + V     G   +EL +   +D IILD+ L    
Sbjct: 1   MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117
           G E+LR +R     TP+ +L+  SS+EDKV GL  GA+DYI+KPF  EEL+ARIRA +R 
Sbjct: 61  GIEILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRI 120

Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +   DL +N   + V      I LT +E+ ++  L   K   L +E 
Sbjct: 121 KSAGTEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      +  ++DV+I  LRKK+ +       I T+ G GYVL+E 
Sbjct: 181 ILEAVWGYDFLGDTNVVDVYIRYLRKKI-DMPERPALIHTIRGVGYVLKET 230


>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 248

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 22  ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 82  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 140

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 141 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 201 ERVWNEDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 248


>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
 gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
          Length = 235

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 114/235 (48%), Gaps = 10/235 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  ++  I+  L+ E+F       G   ++L +    D I+LDL L  + G 
Sbjct: 1   MKILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGL 60

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
           S    G   ++  T    V+LD  +   +        + LT  E+ ++           +
Sbjct: 121 SLRHGGTQNNVYETPHFIVDLDKYSAIQKTDNNTEEPLELTTLEFNLLSTFMSYPGRVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   ++ L+      + +++D  + +LRKK+        YI+TV G GY   +  
Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPDTANPTYIKTVVGVGYKFEDEV 235


>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 229

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+++LA  +  +L+ E F   V   G + +        D ++LDL L  + G +
Sbjct: 3   HVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAD 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A        ++  G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 TAGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      + K +DV + +LR K+        ++ TV G GY L  
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKLEP 229


>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 242

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + + L+ E + +     G  G+   +   +DA++LDL L  + G E
Sbjct: 6   RVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR+  
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++       +  G+L ++  A+ V V    I LT +E+ ++   +       ++   L
Sbjct: 126 LARNARLESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + +     ++  I +LR K+         I TVWGRGY L      E
Sbjct: 186 NQVWGYQHDGYEHTVNTHINRLRTKVEADPAEPRRILTVWGRGYKLSPTGAGE 238


>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
 gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
 gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
          Length = 225

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL++DD A+   +   L+   F V   + GE  +EL    + D +ILDL L  + G 
Sbjct: 1   MKVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF--PQADLVILDLMLPKVGGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R  +   P+ IL+     ED+V GL+ GADDY+ KPF+  E+VAR++A++RR+ 
Sbjct: 59  EVARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRRAG 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +V G L +    +   + G  + L+  E+ ++  L+       ++E  L  ++ 
Sbjct: 119 LREE--LVYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWG 176

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  +++DV I  LRKKL +      +IETV G GY  ++ 
Sbjct: 177 PGFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGYRFKDP 220


>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   + V V   G DG  L +   FD +ILD+ L  + G+
Sbjct: 1   MRILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R     TPV  L+   ++ED+VRGL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  QG RI+LT KE+ ++ LL  R+   L++    + ++ 
Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +       I TV G GYVL  +A
Sbjct: 181 MNFDSDTNVVDVAIRRLRAKV-DDPYPLKLIHTVRGMGYVLDVSA 224


>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 224

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 91/225 (40%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK L+  I   LK E ++V      E+G+    +  FD IILDL L  + GF
Sbjct: 1   MKVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLMLPKMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ +LR  KI TP+ +LS   S+EDKV+GL  GADDY++KPF+  EL+ARI+A+VRRS+
Sbjct: 61  YIIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSK 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S +   DL ++L  K V     +I LT KEY++++ L       +T+ M L +++
Sbjct: 121 DIDEISKLKYHDLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVF 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + E  ++DV I +LR K+ +    K  I TV G GYVL+ N
Sbjct: 181 DIDFDIESNVVDVQIHRLRDKI-DKGFDKRLIHTVRGFGYVLKAN 224


>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 221

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +   L +  F V V + G+   E      FD ++LD+GL  + GF 
Sbjct: 3   RILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +   PV IL+   S++D V GL+ GADDY+ KPF  EEL+AR+R  +   R 
Sbjct: 63  VLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  +   V G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 123 QEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +P   ++DV++  LR+KL         I TV G GY L E
Sbjct: 183 DFDPGSNVVDVYVRYLRRKLGAD-----RITTVRGMGYRLEE 219


>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 230

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G D +E  +    D ++LDL L  +PG E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV   + PV +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRVRS-NVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +        +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   
Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ ++      + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 182 IDRVWGADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 230


>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 225

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DDK ++  I + LKSE++ V     G + ++L K   FD +ILD+ +  + 
Sbjct: 1   MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E L  +R    + P+  L+  +   D +RGL  GADDYISKPF+  EL+AR++A +RR
Sbjct: 61  GLETLIHIRKD-FNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRR 119

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + I  G+L ++LD   V V G  + LT  EY+++EL    KN   + E   
Sbjct: 120 YTIFNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++  +       I V I KLR+K+        YI+TVWG GY +
Sbjct: 180 ENIWRDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI 225


>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
 gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 263

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L+ E + V +   G + + + +  + + ++LD+ L  I G EV
Sbjct: 40  ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLEV 99

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R     +  PV +L+      DKV GL+ GADDYI+KPF+  EL+ARIRA +RR +
Sbjct: 100 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRLK 159

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I+  DL ++LD   V V+G  I LT KE++++ +L+       T++  L  ++
Sbjct: 160 PSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERIW 219

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV +  LR+K+        YIET+ G GY L+
Sbjct: 220 GYEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRLK 262


>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E   ++    G++ +++ +  + D +I+D+ + ++ G+E
Sbjct: 3   RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      +KV+G   GADDY+ KPF+  ELVAR++A+++R R 
Sbjct: 63  LCRELR-DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS+N       +    + L  KE++++  L+     T T++  +  ++  
Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++ +       +I T+ G GY L 
Sbjct: 182 DYEGDERTVDVHIKRLRERFAQ-PNAPFFIRTIRGLGYRLE 221


>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 227

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL L  E ++V     G +G++  +   FD IILD+ L  I G E
Sbjct: 5   KILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VLR +R    + P+ +L+    + DKV GL  GA+DY++KPF  EEL+ARIRA ++  R 
Sbjct: 65  VLRKIRQTS-TIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G+L ++ D   V      I LT KE+ ++      KN  LT++  L  ++
Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV+I  LR K+ +       I TV G GY+L+
Sbjct: 184 GYDYIGDTNIVDVYIRYLRSKI-DDKYNIKLIHTVRGVGYILK 225


>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 223

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL  ED+ AL       LK+E F V     G + ++     ++D +ILD+ +  I G 
Sbjct: 1   MRILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV +L+   ++ D+V GL +GADDY++KPF   EL ARIRA++RR+ 
Sbjct: 61  TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +        DL+V    + V   G  I L+ +E+ ++E L   K   L++    N ++D
Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I+DV+I  LRKK+ +    K  I TV G GY LRE 
Sbjct: 181 FGFEGGSNIVDVYIRYLRKKI-DDPFEKKLIHTVRGAGYTLREE 223


>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD I+LD+ + ++ G E
Sbjct: 4   KILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACLKIREEQ-TIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ I    L++N D + V V+   + LT KE+ ++ELL+  K   L+ E   
Sbjct: 123 YNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++  +       + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR ++ S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLR-SRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122

Query: 123 AQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + I       G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227


>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220


>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 234

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  IE+ L +E ++V   + G   +E+ +  E D +ILD+ L  + G  
Sbjct: 4   RILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLDGIS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +K +TP+ +LS      DK+ GL +GADDY+ KPFN  ELVAR+++++RRS  
Sbjct: 64  VCMKIRESK-TTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            AQ            I    L+++ +  T  V G+ + LT  E+ ++ LL+         
Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++  +       + V I +LR KL     G+  I TVWG GY L 
Sbjct: 183 EEIFELIWKDKYLDSSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKLE 233


>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   ++  L+++ ++V     GE+ ++     E+DA++LD+ +  I G 
Sbjct: 1   MRILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    STPV +L+   SIED+V GL  GADDY+ KPF  EEL+ARIR ++R+S 
Sbjct: 61  QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +   +   +L+V+L+   V      I L+ KE+ ++  + + K   L+++    H+
Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        ++DV+I  LR+K+ + +     I T+ G GYVLRE+
Sbjct: 181 WNYDYAGASNVVDVYIRYLRRKI-DDSYEPKLIHTIRGAGYVLRES 225


>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S    I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I+TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226


>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 228

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +EL LK E + V   + G  G+E     +FD IILD+ L  + G E
Sbjct: 5   KILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR     TPV +L+    + DKV GL  GADDY++KPF  EEL+ARIRA+++R + 
Sbjct: 65  VLRRLRQVS-ETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H + +I  GDL +NL+  +V      + LT KEY ++  L   KN  LT++  L  ++
Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  LR K+ +       I TV G GY++++ 
Sbjct: 184 GYDYYGDTNVVDVYIRYLRSKI-DDRFNTKLIHTVRGVGYIIKDE 227


>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
           4200]
 gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 227

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   I+  L +  F+VY    G   +   +    D ++LDL L D  G 
Sbjct: 1   MKILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R +  + P+ +L+  S  ED + GLQ GADDY+ KPF+ +ELVARI+ ++RRS 
Sbjct: 61  TVCRKIRESS-NIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRSE 119

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I  G+L +  D++ V +    ++LT  E+ ++  L+   N   ++   +  
Sbjct: 120 TLLNPNKLSINKGELLIYPDSRQVYLHQIELNLTTTEFDILYTLASTPNKVFSRGDLIEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ +     NYI TV G GY  
Sbjct: 180 IKGIEFDGLDRSIDSHIKNLRHKIESDPKTPNYILTVHGTGYRF 223


>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 244

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   ++  + ++ DA++LD+ L D  G E
Sbjct: 20  RVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGME 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+  
Sbjct: 80  VLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTV 139

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S+I  GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 140 VADESSSIIAVGDLTMDEDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRV 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++++I  LRKK+   AG    I T+ G GYVL+ 
Sbjct: 200 WNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTMRGVGYVLKP 242


>gi|307154731|ref|YP_003890115.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306984959|gb|ADN16840.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 225

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  I   LK   + V +   G+ G       E+D IILD+ L  I G 
Sbjct: 1   MRILLVEDEPGIAQFISQGLKETGYVVDIAPDGQQGKNYVDAVEYDIIILDIMLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R  K+S P+ +L+   S+ED+V+GL  GADDY+ KPF   EL+ARIRA+ RR  
Sbjct: 61  KLLGEIRAKKVSVPILLLTARDSVEDRVKGLNQGADDYMVKPFAFSELLARIRALQRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL+++L  + V+     I L+  E++++E L    N  LT+      +++
Sbjct: 121 LQFNTVLALGDLTMDLVTREVKRGDKLIDLSPLEFKLLEYLLRNCNQVLTRTQIGEQVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   ++DV++  LR+K+         + TV G GY ++   
Sbjct: 181 LDFYSNSNVVDVYVGYLRRKIDRGFQRP-LLHTVRGVGYCMKAEG 224


>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
 gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
           29799]
          Length = 226

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 130/224 (58%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  +EL L+ E + V     G +G+E      FD ++LD+ L  + G E
Sbjct: 3   KILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR LR      PV +++   ++ DKV GL SGADDYI+KPF  EEL+ARIRA +R R  
Sbjct: 63  VLRRLRRES-QVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G L+++ +   V V+G  + LT +E+ ++  L   K   +++E  L++++ 
Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E   +DV+I  LR K+  A G K  I TV G GYV+RE 
Sbjct: 182 FDFVGETNAVDVYIRFLRAKIDEAFGIK-LIHTVRGVGYVIREE 224


>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 218

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ +   +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  + LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
 gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +A  + L +   + +V V + G  G+E      +D +ILDL L    G E
Sbjct: 4   QVLVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLPGADGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + R LR     TP+ +L+  S+  D+V GL+ GADDY++KPF+  EL AR++AI R    
Sbjct: 64  ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    L +++D + V V+G  I LT KE+Q++   +       ++   L
Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++          +   I +LR K+        YI+TVWG GY  
Sbjct: 184 DQVWGYSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGYKF 229


>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
 gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 237

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   ++L  + E F V   D G+  +        D +ILD+ L    G  
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  ++  P+ +L+      D+V GL+ GADDY++KPF+  ELVARI+A++RRS+ 
Sbjct: 66  LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +         L +  D + V V      +T +E+ ++  L+       T+E  L  +
Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      + + +DV I +LR KL++      Y++TVWG GY      K
Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230


>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 236

 Score =  277 bits (711), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 117/234 (50%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  I+  L+ E+F+  V   G   ++L +  E D IILDL L  + G 
Sbjct: 1   MKILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGL 60

Query: 61  EVLRALRVAKISTP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D+V GL +GADDY+ KPF+  EL+AR+RA++RR
Sbjct: 61  EVCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
           S    G   ++  T    V+LD  +   +        + LT  E+ ++           +
Sbjct: 121 SLRHGGTQNNVYETSHFMVDLDKHSAIKKADNNTEEILELTTLEFNLLSTFMSYPGRVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   ++ L+      + +++D  + +LRKK+        +I+TV G GY   + 
Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPKTANPTFIKTVVGVGYKFEDE 234


>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
 gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
          Length = 223

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +   +   L S  + V+    G + I++ K    D ++LD+ +  + G 
Sbjct: 1   MNILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+   + +D+V GL+ GADDY+ KPF+ +EL+ARI A +RRS+
Sbjct: 61  EAAQEIRTFS-DVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G+        +I   +L+V+L    V+V G  ++LT KE+ ++ LL   +    ++E  L
Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++    E   + +D  I  LR KL  A     Y++TVWG GY  
Sbjct: 180 DQIWGFESEGTARTVDTHIKTLRLKLKAAGS---YVQTVWGVGYKF 222


>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 223

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED++  + ++  ML+ E F V +   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++ + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-SRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 Q---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   + +  G + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 228

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A      L++  F V +   G  G +     + D ++LD+ L  + GF+
Sbjct: 3   KILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  + + P+ ++S      DK+RGL  GADDYI KPF+  ELVAR++A ++R R 
Sbjct: 63  VCRRIREKR-NIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    L+   DL+++     V ++G  I +  KE+ ++  L+       +KE    
Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +   + V + ++R+K+  +     YIETVWG GY  R+
Sbjct: 182 RIWGEDSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRFRK 228


>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 236

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+K +   +   L+   + V   + GE   E+ +  + D  +LD+ L  + GFE+
Sbjct: 6   IYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGVDGFEI 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + ++        P+ +L+  +   D+V GL+ GADDYISKPF+  E VAR++   RR  
Sbjct: 66  CKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFRRQA 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S  ++   +  G ++++ + + V      I +T KE+++++LL + +   L+++M L  
Sbjct: 126 DSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDMLLQK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      E + +DV I  LR+K+ +      YIETV   GY   +    E
Sbjct: 186 IWGFDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRCIGYRFSDKEVRE 236


>gi|186684226|ref|YP_001867422.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466678|gb|ACC82479.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I+  L  +N+ V   + G+  + L + +  D +ILD+ L D+ GF 
Sbjct: 7   KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALALFEQFNPDLVILDVNLPDVTGFN 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK+RG   GADDY++KPF   EL  R+ AI+RR R 
Sbjct: 67  LCQEM-QSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V   L ++   + V +    + LT  E+ ++  L+        +   +  +
Sbjct: 126 ITTAEQKRLVFEKLMIDPVRREVALNNQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +D     + +++DV I ++RKK+   A     I+TV G GY     A  +  E
Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDASQPALIQTVRGVGYKFESPAHPQHLE 238


>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 233

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  + L +K E ++  +   G+  ++  + +  D  ILD+ +  +
Sbjct: 1   MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R    + P+  LS  +S  DK+ GL  GADDY++KPFN  ELVAR+ A +R
Sbjct: 61  DGYEVTRLIREQH-NMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLR 119

Query: 118 RSRGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R +   Q         ++  G L +  + +TV + G  I LT KE+ ++ LL+       
Sbjct: 120 RFKQLNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +     ++          + V I  LRKKL        +I+TVWG GY  
Sbjct: 180 SADNIFEMVWGEAYYEGSNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGYSF 231


>gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
 gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia
           hollisae CIP 101886]
          Length = 231

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 131/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD +L+  +E  L+     V VTD G+  + LC    +D  I+D  L  + G 
Sbjct: 1   MRVLLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +++ALR A++ TP+  L+ +  ++D+V GL++G DDY++KPF   EL+AR+ A+ RR+ 
Sbjct: 61  SLVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAV 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I  GD+ +NL   +   +G  + L  KE++++EL        +T+ M L H
Sbjct: 121 LKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D   +P+  +++  I +LR KL     G   I+TV G GY L + + +
Sbjct: 181 VWDIHFDPQTSVVETHISRLRNKLEK-PFGDTLIQTVRGVGYKLEQKSGE 229


>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 242

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
 gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
           Tu4000]
          Length = 242

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L    + V     G   +     +  D ++LDL L  + G E
Sbjct: 13  RVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLPGMDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RRSR 
Sbjct: 73  VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 131

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +    L+V+  A+    +G  + LT +E+ ++            +E  +  +
Sbjct: 132 APAAASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRAFAREELMREV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      ++  + V + +LR K+ +       ++TVWG GY     A
Sbjct: 192 WGWDF-GDLSTVTVHVRRLRGKVEDDPARPRLVQTVWGVGYRFDAAA 237


>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
 gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 244

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + L L+ E + V     G+DG+   +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++        +  G L ++   +   V G  I LT +E+ ++   +       ++   L
Sbjct: 126 LSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++  + E     ++  I +LR K+         I TVWGRGY L     
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKLVAPGP 236


>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 224

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ LA  ++ +L+ E   V++   G  G+++    ++D  ILDL L D+ G 
Sbjct: 1   MAILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR A++ TP+ +L+   ++ED+V GL +GADDY+ KPF   ELVAR+ A++RR+R
Sbjct: 61  EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     +++   DL+++L        G  I LT KE+ ++E L       LT+   ++ +
Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +    ++D++I  LR K+         I+TV G GY + 
Sbjct: 181 WQYDLDSLSNVVDIYIHYLRDKIDRGFDRP-LIKTVRGVGYKIE 223


>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 227

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F + V   G+ G+E      FD +ILD+ L  + GFE
Sbjct: 3   KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L+++  A+ V V    +  T KE+ +++ +    N  L+KE     
Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      ++  + V I KLR+KL        Y+ETVWG GY  
Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRF 225


>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 225

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L++ NF+    + GE+ +++ K  + D I++D+ +  + GF +
Sbjct: 6   VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+  L+      DKV+GL+ G DDYI KPF+  EL+ARI AI+RR+  +
Sbjct: 66  CARIREQS-DVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q    +  G L ++   + V V G  + LT KE+ ++  L+       ++E  L  ++ 
Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  I  LR KL  A+   ++I+TVWG GY   
Sbjct: 185 YDYTGNARTVDTHIKTLRMKLKQAS---DFIQTVWGIGYKFE 223


>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 230

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L+ ++   L+ E + V     G  G+E  +  + D +ILD+ L  + GF V
Sbjct: 6   ILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ IL+      D++ GL+ GADDY++KPF+  EL+AR+RAI+RRS   
Sbjct: 66  CRILRQES-EVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDRR 124

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G + ++  ++        ++L+ KE+ ++  L   +   L++++ L  ++
Sbjct: 125 ISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +DV I  LR+K+    G   YI+TV G GY     
Sbjct: 185 GYDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGYRFEAP 229


>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 229

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L+ ENF   V   GED +E  K  ++D  ILD+ L  + G+E
Sbjct: 7   RILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLPGMDGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S PV  LS   +  DKV GL+ G DDY+SKPF   EL+AR+RA++RR  G
Sbjct: 67  LCRRLRSF-TSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   I    ++++ DA T       I LT +E++++  L       +++E  L   +
Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E K +D  I +LR K++ A    + +ETV G GY  R+
Sbjct: 186 GWEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRFRQ 229


>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 232

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +    +  G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++   D+++N+    V++    + LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          + V I KLR+K+        YI+TVWG GY + +
Sbjct: 184 YELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232


>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 227

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL+  I ++LK+E F+      G+  ++     + D ++LDL L    G  
Sbjct: 4   RVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKDGTV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL++GADDY+SKPF  +ELVARIR  +RR   
Sbjct: 64  VCREIRRESG-VPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ +    L++E+ L  ++  
Sbjct: 123 PEPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGYK 221


>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 236

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A  + + L  E ++V     G  G+   +   + A++LDL L  + G E
Sbjct: 6   RILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRRSEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A++      ++  G LS++  A+   V G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LARNAKLEAGVLSLGGLSIDPIAREARVDGQSVELTPREFDLLYFFARQPGKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++  R +     ++  I +LR K+         I TVWGRGY L E+A
Sbjct: 186 NQVWGYRHDGYEHTVNTHINRLRIKIERNPADPKRILTVWGRGYKLAEDA 235


>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 229

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IED+KA++  I+  L+ + + VY    GE+G+ L K  + D ++LD+ L    G E
Sbjct: 3   RIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ I+S  +   DKV  L+ GADDY++KPF   E++AR++A +RR   
Sbjct: 63  ICKEIRQTK-EVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMT 121

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +V  +L ++L    V      I LT +E+++++ L   K    ++E  L
Sbjct: 122 EGNKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +V+ +DV I +LR+K+ + A    Y+ T  G GY  R
Sbjct: 182 EKVWGYEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYFR 228


>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
 gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
 gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 231

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ ++    YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + +   +I    + ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+  I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231


>gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51]
 gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 229

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L++D++++  ++E +++   +     D G + +E+      D +ILD+ L  + GF
Sbjct: 1   MKIMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R      P+  LS    I DK  G + G DDY+ KPF+  EL  RI+A++RR  
Sbjct: 61  AVCEKIRSFS-DVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPH 119

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  ++  ++  GDL + L+   V   G ++ LT KE++++  L+  +    T+E  
Sbjct: 120 RLEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++    E +   + VFI ++R+K+        YI TVWG GY  +
Sbjct: 180 LDRIWGLDFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKFK 227


>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 234

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+A  ++  L+   + V V   G    +  K  +F+AI+LDL L ++ G  
Sbjct: 7   KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  K+STP+ +++      D+V GL+ GADDYI+KPF+  E+VAR++A++RRS+ 
Sbjct: 67  VLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQV 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       I   DL +N   KTV  +   + LT +EY ++   + R    + +E  L
Sbjct: 127 STDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      E +++D+ I  LR K+ +       ++TV G GY +
Sbjct: 187 TAVWGYEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGYTM 232


>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 225

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ L   +   L+   + V     GE+G  L +   +D IILD+GL    G 
Sbjct: 1   MRLLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A++ TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  + LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL+        I+TV G GY++   A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPGA 220


>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
 gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. BAV1]
          Length = 227

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +A  ++  L+ E F V  T  G+  +        D IILDL L +I G++
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS  
Sbjct: 64  VCREIRKES-RVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ L 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 237

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   ++L  + E F V   D G+  +        D +ILD+ L    G  
Sbjct: 6   KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  ++  P+ +L+      D+V GL+ GADDY++KPF+  ELVARI+A++RRS+ 
Sbjct: 66  LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQA 124

Query: 122 HAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +         L +  D + V V      +T +E+ ++  L+       T+E  L  +
Sbjct: 125 ADPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      + + +DV I +LR KL++      Y++TVWG GY      K
Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKLASLPH--EYLQTVWGVGYKFTPPVK 230


>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
 gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
           [Dehalococcoides sp. GT]
          Length = 227

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+K +A  ++  L+ E F V  T  G+  +        D IILDL L +I G++
Sbjct: 4   KILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEISGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+    + DK+ GL+ GADDY++KPF  +ELVAR++  +RRS  
Sbjct: 64  VCREIRKES-RVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +V   L ++ + + V++ G  + LT  E+ ++  L++      ++   L+ L 
Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E   + ID  I  LRKK+        YI TV G GY +++  
Sbjct: 182 GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKMKDRG 227


>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 218

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 241

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++ +   +++ L+ EN+ +     G + +E     ++D I+LDL L    G 
Sbjct: 8   IRILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++R   
Sbjct: 68  EVCKEIRAQK-TTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126

Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   L+++ DA  V V G  + LT KEY+++  L+   +    +E
Sbjct: 127 NAAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
             L  ++      +++ +D  I +LR+KL+ A       I TVWG GY   
Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
 gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2]
 gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD2M]
          Length = 272

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 39  RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 99  ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 158

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 159 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 218

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 219 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPEQRDA 272


>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 252

 Score =  277 bits (711), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   +   + ++ DA++LD+ L D+ GF 
Sbjct: 27  RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR    + PV  L+   ++ED+V GL  G DDY++KPF+ EE++AR+RA++RRS  
Sbjct: 87  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 146

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++++  GDLS++ D+  V   G  I+LT  E++++  L       L+K   L+ 
Sbjct: 147 AVTARQEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 206

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G    I T+ G GYVL+ 
Sbjct: 207 VWNYDFGGQANVVELYISYLRKKI--DVGRAPMIHTLRGAGYVLKP 250


>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 224

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  +   ++ +L  E + V V + G  G+++ +    + +ILD+ +  + G+E
Sbjct: 4   RILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ ILS    +E +V+GL  GADDY+ KPF  EEL+AR++A++RR   
Sbjct: 64  ICRRFRRENF-IPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+ +I   DL ++L  + V   G  + LT KE+ +++L     N  LTK+  ++H++  
Sbjct: 123 SAK-VIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++V++  LR+KL         I TV G GYVLRE  
Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEE-GNRSRLIHTVRGVGYVLREQG 224


>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
 gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1272]
 gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
           AH1273]
          Length = 241

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD ++   +E  L  E F V +   GE+G+       FD IILD+ +  + G E
Sbjct: 15  HILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K + P+ ++S   +  DK  GL  GADDYI KPF+  EL AR++A +RRS  
Sbjct: 75  VVRIIRE-KSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++        I  GDL ++    TVE +G ++ LT KE+++++L    +N   TK     
Sbjct: 134 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +I+V + +LR+K+ +      YI+T+WG GY L 
Sbjct: 194 LVWNEEYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLE 239


>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 234

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +   I   L    + V     G  G+E     ++D I+LD+ L ++ G 
Sbjct: 1   MRILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV +L+ + +++D+V+GL +GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  GDL ++   + V+     I L+ +E+ ++E L    N  L++     H++ 
Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + K+IDV+I  LR+K+ +  G  + I TV G GY +R
Sbjct: 181 FDFYGDYKVIDVYIGYLRRKI-DRHGASSMIHTVRGVGYSMR 221


>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
 gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
          Length = 231

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D ++LD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEMRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 231

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL      + +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGYKIEK 231


>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 235

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G + +   +  E D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    PV  L+      DKV GL  G DDY++KPF+ +E+VARIRA++RR+  
Sbjct: 69  ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTAS 128

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++ DA  V   G  I L+  E++++  L +  N  L+K   L+H++
Sbjct: 129 GEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+ +       I+T  G GY++R
Sbjct: 189 EYDFNGDASIVESYISYLRRKV-DRPEWPALIQTKRGVGYLMR 230


>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 227

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + +L+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    +    I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + KI+DV I +LR K+   +    YIETVWG GY  +
Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226


>gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   I   LK E ++V     G++  E     ++DA+ILD+ +    G 
Sbjct: 1   MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K STPV +L+   S+ED+V GL +GA+DY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++     DL V+LD   V      I L+GKE+ ++  +       L+++    HL++
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+ +    K  I TV G GYVL+E 
Sbjct: 181 YDYMGSSNVIDVYIRYLRKKI-DDGREKKLIHTVRGVGYVLKEE 223


>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 225

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 139/223 (62%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA+ I+   + E + V VT  GEDG+   K   +DAI+LD+ L  I G 
Sbjct: 4   MRLLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPIIDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   ISTPV IL+   S++DKV GL SG+DDY++KPF+ EEL++R+RA++RR  
Sbjct: 64  SLLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRRF 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I   DL ++   KT++    RI L+ KEY ++E L+L KN  +++   + HLYD
Sbjct: 124 ATSSPIIKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSIIEHLYD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDVFI ++R K+      K  I T  G GY L+E
Sbjct: 184 EDFDLYSNVIDVFINRIRNKIDKDF-DKKLIHTYRGIGYSLKE 225


>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
          Length = 232

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  IE+ L+ E ++V     GE+ I + +    D ++LD+ +  +
Sbjct: 1   MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S +  G + ++ + +TV V G ++ LT KE+ ++ LL+        
Sbjct: 120 RFLTLNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYN 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 180 VENIFQQVWADDYYEGGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTF 230


>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
 gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+++D+K +   ++  L+ E + V     G++ ++  K  E+D ++LDL L  + G+
Sbjct: 1   MKALVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R      P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR  
Sbjct: 61  EVCQQIREFS-DMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNK 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     +I +G L ++++AK + ++   I LT KE+ +++LL+        +E  
Sbjct: 120 RKAPAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++  +   + + +DV + +LR+K+        YI T WG GY  +
Sbjct: 180 LTLIWGSKYPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYFQ 227


>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium intracellulare ATCC 13950]
          Length = 228

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G + +EL      DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              ++    +   DL+++   + V     RI LT  E+ ++E+L       LT+   L  
Sbjct: 121 PEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRETPP 228


>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  I++++DD+ +   +   L  E + V     G +G+ L    + D +ILD+ +  + 
Sbjct: 1   MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV R +R    + P+ +L+    I D+V+GL +GADDY+ KPF  EEL+AR+RA++RR
Sbjct: 61  GWEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRR 120

Query: 119 SRG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + IV  DL+++LD++     G RI LT KEY ++ L        LT++  
Sbjct: 121 KSDKIDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  ++      E  +++V+I  LR+KL    G K  I+TV G GYVLR
Sbjct: 181 MEKIWGYDFSGESNVLEVYIAMLRQKLEE-GGAKRIIQTVRGTGYVLR 227


>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
 gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 124/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN NVY    G + +   +  +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYKK 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++++    L++N+      + G  + LT  E+ ++ +L  RK + ++ E 
Sbjct: 124 YNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAED 183

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++           I V I  LR+K+ +  G   YI+T+WG GY + +
Sbjct: 184 LFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGYKIED 234


>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 238

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  L+ +++  L+    +      G   ++L +    D ++LDLGL  + G EV
Sbjct: 12  VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR       V +L+  +   DK+ GL  GADDY++KPF+  ELVARI+ ++RR R  
Sbjct: 72  CRQLRTFS-DCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  +   G L+++  ++ VE+    + LT  E+ +++ L+      L +    + 
Sbjct: 131 STGATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDA 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  ++DV I  LRKKL +      +++TV G GY +
Sbjct: 191 VWGEDWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 218

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ G DDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
 gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
 gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
 gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
          Length = 243

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 11  RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+  
Sbjct: 71  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 130 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 190 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 239


>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 228

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DD+ + + + + L++ENF     +  ++ I++    E + ++LD+ +  I 
Sbjct: 1   MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  K + P+ ++S  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119

Query: 119 SR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +       + + +I  GDL++N D + + V    + LT KE+ ++ELL+  K   L+  
Sbjct: 120 YQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIR 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++          + V I  LR+K+        YI+T+WG GY +
Sbjct: 180 KIYEEVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V + + GE G+ +    +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
 gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. FRC-32]
          Length = 223

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  I   L+   +   V + G +G++L    E+D IILD+ L  + G+
Sbjct: 1   MRILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R  K  TP+  L+   +I+D+++GL+ GADDY+ KPF   EL+ RIR I+RR  
Sbjct: 61  QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q LI  GDL ++L    V   G R+ LT KE+ +I LL+ R    LT+      ++D
Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +  ++DV + +LR K+ +    K  I TV G GYVL E
Sbjct: 181 IDFESDTNVVDVHMRRLRAKV-DDPFEKKLIHTVRGVGYVLEE 222


>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 218

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 230

 Score =  277 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A      L+     V V   GE G+        D ++LD+ L  + GFE
Sbjct: 3   RILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR       V +L+  +   D+V GL+ GADDY++KPF+  EL AR+RA++RR  G
Sbjct: 63  IVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGVG 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V G L ++  A+ V V G  ++LT +E+ ++  L+       T+   L  +
Sbjct: 123 PEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +          ++  I +LR K+   A    Y+ETVWG GY  
Sbjct: 183 WGAGFSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGYRF 225


>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 242

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 247

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +         +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 240

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I+  L  +N+ V   + G+  + L + +  D +ILD+ L D  GF 
Sbjct: 7   KILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFEQFNPDLVILDVNLPDAIGFN 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK+RG   GADDY++KPF   EL  R+ AI+RR R 
Sbjct: 67  LCQDM-QSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQRV 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  ++   L ++   + V      + LT  E+ ++  L+        +   +  +
Sbjct: 126 VTTAEQKRLIFEKLMIDPVRREVSFNNQPVPLTALEFDLLHFLASHPGRVWRRSELIQEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + +++DV I ++RKK+   AG    I+TV G GY   
Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDAGQPALIQTVRGVGYKFE 229


>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
 gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
          Length = 253

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G   +E+ +  + D ++LDL L    G E
Sbjct: 33  RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 93  VCRQIRGES-DVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +   D+++++    V   G RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 211

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 212 RHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250


>gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
 gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC
           15444]
          Length = 237

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 166/236 (70%), Positives = 195/236 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ALA SIELMLK+  FNVY+TDLGEDG+++ K YEFD I+LDL L DI GF
Sbjct: 1   MRVLLIEDDRALARSIELMLKAAGFNVYLTDLGEDGVDIGKVYEFDMILLDLSLPDITGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR+++++TPV ILSG   IE KV+ L  GADDY++KPFNK+EL+ARI AIVRRS+
Sbjct: 61  EVLKQLRMSRVNTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGD+ VNLDAKTVEV G R+HLTGKEY M ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           G DEPE+KIIDVFICKLRKKL  A GG +YIETVWGRGYVLR+    +    +E A
Sbjct: 181 GLDEPELKIIDVFICKLRKKLQQATGGNHYIETVWGRGYVLRDPRPSQKSSEIEEA 236


>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A   +  L+   F V V + G  G+      +FD  ILDL L  I GFE
Sbjct: 3   RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   I   L+ E +       G + +EL K  + D I+LD+ +  + 
Sbjct: 1   MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R       + +L+  S+  DK+ G + GADDYI+KPF+ + LVA+I A+++R
Sbjct: 61  GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 120

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   AQ        G L++N  + TV + G  I LT KE++++  L   K   LT+EM +
Sbjct: 121 ADAGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMM 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++      +++ +D  I +LR+KL         I TV G GY L 
Sbjct: 181 NLVWGYEYYGDLRNVDSHIKRLRQKLK---SEGRLITTVRGSGYKLE 224


>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 221

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD A+   +   L  E F V   + G   +E       D +ILDL L  + G+ 
Sbjct: 3   RVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQAPGA--DLVILDLMLPGMDGWR 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+     E++VRG + GADDY++KPF+  E+VAR+RA++RR   
Sbjct: 61  VAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRV-- 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V G L +   A+ V ++G  + L+  E+ ++  L+       T+E  L  ++  
Sbjct: 119 GLKDELVYGPLVIRPRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGP 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             E   +++DV +  LRKKL + A    +IETV G GY  RE+
Sbjct: 179 GFEGVDRVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRFRES 221


>gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 238

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 154/225 (68%), Positives = 185/225 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+MLK  N NVY TDLGE+G++L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIEMMLKHANLNVYSTDLGEEGMDLAKLYDYDIILLDLNLPDVSGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A++ TP+ ILSG+   E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRHLRTARVDTPILILSGLDDPENKLKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG +SVNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKLS A GG  YIETVWGRGYVLR+  
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATGGDTYIETVWGRGYVLRDPV 225


>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D+  +   + + L +  +     + G++ +   +   +D +ILD+ + ++ G  
Sbjct: 5   KVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEMDGIA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+  L+      ++V GL++GADDY+ KPF+  EL+AR+ A++RR   
Sbjct: 65  VCKEIRKTS-DIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTK 123

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +  G + +N  ++  E  G  I LT KE+ ++  L        ++E  L  ++ 
Sbjct: 124 QGQQEELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  +R KL  +    N I+TVWG GY   
Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESG---NCIQTVWGVGYKFE 222


>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G + +++      DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DLS++   + V     RI LT  E+ ++E+L       LT+   L  
Sbjct: 121 PDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 245

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 122/237 (51%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D + + + Y+ D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++   DL ++L  + V     R+ LT  E+ ++E+        LT+E
Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E 
Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGEA 245


>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 227

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+K +   +   L+ E F V +   G + +++ +  + D I+LDL L  + G+EV
Sbjct: 5   ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R  K +TP+ +L+      DK+ GL+ GADDYI+KPF+  EL  RI+A++RRSR H
Sbjct: 65  MKKIRQ-KNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPH 123

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q + +   +LS+N +     +    + LT  E++++ LL+       ++   L  ++  
Sbjct: 124 EQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGD 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + ID  I  LR K+      +  I+TV+G GY L 
Sbjct: 184 IYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLV 224


>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S    I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I+TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226


>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
 gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
           A8]
          Length = 242

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +   +DA++LDL L  I G E
Sbjct: 6   RVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 66  ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +    +S++  A+T EV G R+ LT +E+ ++   +   +   ++   L
Sbjct: 126 LERNARIDAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWG+GY  
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGYKF 231


>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 243

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 10  RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A          ++   DL ++L+ + V     R+ LT  E+ ++E+        LT+E 
Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR    D
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242


>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 243

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +   +   L  E F V V + G+    +      D I+LDL +    G  
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR   
Sbjct: 70  VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPP 129

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +  G  + +L ++T++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 LEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV I +LRK + + A    YI+TVWG GYV   + 
Sbjct: 190 LAQLARGREFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVFVPDG 241


>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 131/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT+E  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +       I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231


>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMGGND 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL ARIRA++RR + 
Sbjct: 63  VCKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  G + +++D   V V G ++ L  KE+ ++E L   +   LT+   ++
Sbjct: 122 AESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+ +       + TV G GY L 
Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKLE 227


>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
 gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
 gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
          Length = 227

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD AL+  I ++L+S  +       G   +        D ++LDL L  + G E
Sbjct: 4   KILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R   +  P+ +L+  +   D V GL++GADDY+ KPF  +EL+AR+ A +R    
Sbjct: 64  ICRRIRQTSV-VPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+ ++   DL +NL +  V   G  + LT  EY ++  L+ +    L++E  L  ++  
Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R   + ++++V + +LR K+         + TV G GY +
Sbjct: 183 RHGADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGYRI 222


>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
 gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
           YIT 12067]
          Length = 234

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   + +  + E F V   + G   I   +  + D ++LD+ +  + G E
Sbjct: 7   KILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVLDGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++     +D++ GL+ GADDYI+KPFN  E+VAR++A++RR+  
Sbjct: 67  VCKQVRKMS-DLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAGT 125

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    S I    L +++D   V   G+++  T KE +++  L+       ++   L  
Sbjct: 126 QEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLET 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I ++R+KL+     K  I T+WG GY   
Sbjct: 186 IWGYSYYGDTRTVDTHIKRIRQKLNIPPDSKWDITTIWGVGYKFE 230


>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
 gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
          Length = 230

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD +++  ++  L  E F V +   GE+G+ L +   +DAI+LD+ L  + G +
Sbjct: 3   HILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L+ +R      PV ++S      DK  GL  GADDYI+KPF+  EL ARI+A +RR   
Sbjct: 63  FLKMIREQS-KVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    Q ++   +L+V+++  +V+  G  + LT  E++M+ L         TKE   
Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +++  +  L+ E + VY +  G   +EL    EF+ IILDL L DI G E
Sbjct: 3   KILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDIQGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K    + +++  S++ED++ GL +GAD+Y+ KPF+  ELVAR+ ++ RR   
Sbjct: 63  ICKIIR-NKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  S++    G+L ++ D++ V+V+G  + LT  E+ ++  L++ K   LT+E  ++ ++
Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +DV I  +RKK+   +    YI TV   GY  
Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGYKF 223


>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 248

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +    +  L+ E + VY    G +G +L   ++ D I+LDL ++   G+E
Sbjct: 12  RILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKDGWE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+ +L+      D++ GL  GADDY++KPF+  ELV R++ I++R   
Sbjct: 72  LCEEIRQQS-NVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I   DL +    + V V  +++ LT KE++++ +++       ++   
Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D   +     + V + +LR+KL        +I TVWG GY    N  +E
Sbjct: 191 LELIWDFEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPNGGNE 244


>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 240

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 135/239 (56%), Gaps = 10/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++L L+ E+F++     G++ +++    ++  I+LDL L ++ G E
Sbjct: 3   KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR+  
Sbjct: 63  VANRLREYK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   HA+ LI    L ++ DA  V   G +++LT KEY+++  L+   N    +E 
Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETCE 231
            L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY    N  DET +
Sbjct: 182 LLKDVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVNNNDETTQ 240


>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
 gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 243

 Score =  277 bits (710), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +   +   L  E F V V + G+    +      D I+LDL +    G  
Sbjct: 10  KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR   
Sbjct: 70  VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPP 129

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +  G  + +L ++T++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 LEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV I +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LAQLARGREFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVFVPDG 241


>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
 gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
 gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
          Length = 239

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + ++L      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+  
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTSP 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL+++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 124 VDGDGESAAMTFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRILEE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 VWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231


>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/237 (32%), Positives = 126/237 (53%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D +E    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR   ++ PV +L+   ++ D+V GL +GADDY+ KPF  +EL+ARIRA++RRS  
Sbjct: 72  AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +  GDL ++L  + V   G R+ LT  E+ ++E+        LT+E 
Sbjct: 132 AAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR  A+ E  
Sbjct: 192 ILKAVWGFEFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRP-AEGEPS 246


>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
 gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
          Length = 243

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243


>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 245

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E+      D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 71  VCQELRKDS-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I  GDL ++ + + V  +G RI LTG E+ ++EL+  R     ++   L
Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLFQ 238


>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
 gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
          Length = 231

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+DDK +   + + L++E + +Y    G++ + +   ++ D +ILD+ +    
Sbjct: 2   MKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKRN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RR
Sbjct: 62  GLEVCQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRR 120

Query: 119 SRGHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S     + +    +       ++    TV+V G  I LT  E+ ++ LL+       + E
Sbjct: 121 SSFQQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++       K + V I  LR+KL     G+  I TVWG GY + +
Sbjct: 181 EIFERVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 228

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DDK +   ++   + E F VY    G +G+ L +    D  +LD+ L  + GFE
Sbjct: 4   RIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      DK+ GL+ GADDY+ KPF+  E+VAR++AI+RRS  
Sbjct: 64  ICRKLRKEG-NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     I  G L+++     V++    + LT  E++++ LL+       ++   + H+
Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   + +D  +  LR+KL +A     YI+TV+G GY  
Sbjct: 183 QGYSFEGYERTVDAHVKNLRRKLGDA----QYIQTVYGIGYKF 221


>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 231

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL+++D+ A+   +   L  E ++  V   GE   +    +  D I+LD  L  
Sbjct: 1   MKMAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPG 60

Query: 57  IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           I G ++ R L+    +   PV +L+     EDKVRGL  GADDYI+KPF+  EL+ARI+A
Sbjct: 61  ISGVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKA 120

Query: 115 IVRRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RRS    +  +I    L ++ D+  + V G  + +   E++++           ++  
Sbjct: 121 VLRRSAPLLSGEVIEVNGLKLDPDSHRLSVGGAPLEMGPTEFRLLHFFLTHLERVYSRGQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++++      E + +DV I +LRK L   +G    I+TV G GY  
Sbjct: 181 LIDYVWGNNVYVEERTVDVHIRRLRKSLEP-SGHDGLIQTVRGVGYRF 227


>gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
 gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756]
          Length = 224

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   I   LK E ++V     G++  E     ++DA+ILD+ +    G 
Sbjct: 1   MRILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K STPV +L+   S+ED+V GL +GA+DY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++     DL V+LD   V      I L+GKE+ ++  +       L+++    HL++
Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+ +    K  I TV G GYVL+E 
Sbjct: 181 YDYMGSSNVIDVYIRYLRKKI-DDGREKKLIHTVRGVGYVLKEE 223


>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 220

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V ++G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220


>gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 234

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 147/228 (64%), Positives = 186/228 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A SIELML  + FNVY TDLGE+GI+L K Y++D I LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKSIELMLTKKRFNVYTTDLGEEGIDLGKLYDYDIICLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A++ TP+ +LSG++ +E KVR L  GADDY++KPF++EEL+ARI+A+VRRS+
Sbjct: 61  EVLKTLRTAQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD+KTVE+    +HLTGKEY ++ELLSLRK TT+TKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVF+CKLRKKL+ A   +NYIETVWGRGY+LRE    E
Sbjct: 181 GMDEPELKIIDVFVCKLRKKLNKAYPDENYIETVWGRGYILREAEHAE 228


>gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
 gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium
           vulgare Y25]
          Length = 238

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 151/224 (67%), Positives = 183/224 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIE+ML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSRSIEMMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMTGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+A++ TP+ ILSG    + K++G   GADDY++KPF +EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLARVDTPILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLD KTV+V+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSVATGGDNHIETVWGRGYVLRDP 224


>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D + + + Y  D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++   DL ++L  + V     R+ LT  E+ ++E+        LT+E
Sbjct: 130 AASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E 
Sbjct: 190 QILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGSGEA 245


>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
           BAA-613]
          Length = 229

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G  G++     ++D +ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKRVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  LI    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 223

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  LA  +  MLK E   V  +  GE   +L     FD +ILD  L    G 
Sbjct: 1   MHLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR    S PV +L+   +I+ K+ G ++GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  K V   G  I L+ KEYQ++E         LT E  L H++D
Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              EP   ++   +  LR+K+   AG    I TV+G+GY  
Sbjct: 181 SGAEPNSNVVAAQVKLLRRKIDKDAGTA-LIHTVYGQGYRF 220


>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 220

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+LI    +S+N   + V  QG  + LT KEYQ++  L       +T++  +  LY 
Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK S        I T+ G GY++ E
Sbjct: 181 WSEEAESNTLEVHIHHLRKKFSTD-----LIRTIRGVGYLVEE 218


>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 241

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 124/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++ +   +++ L+ EN+ +     G + +E     ++D I+LDL L    G 
Sbjct: 8   IRILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EV + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++R   
Sbjct: 68  EVCKEIREQK-TTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAA 126

Query: 118 -----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ ++V   L+++ DA  V V G  + LT KEY+++  L+   +    +E
Sbjct: 127 NAAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDRE 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
             L  ++      +++ +D  I +LR+KL+ A       I TVWG GY   
Sbjct: 187 QLLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
 gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IEL LK+EN+NV+     ++ +   +    D  ILD+ + +I GF +
Sbjct: 15  ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGFTI 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R    + PV +L+      DK+ G   GADDYI+KPF   ELVAR++A +RR    
Sbjct: 75  LQKIRET-YNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTLY 133

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    +  I    L +N + + V +   ++ LT  E+ ++  LS  +   ++ E    
Sbjct: 134 NQSSKPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELFQ 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V I  LR+K+ ++     +I+TVWG GY + +
Sbjct: 194 EIWGEKYFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTIEK 240


>gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 225

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  + G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +    K  I TV G GYVL 
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFSVK-LIHTVRGVGYVLE 220


>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 228

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DD+ + + + + L++ENF     +  ++ I++    E + ++LD+ +  I 
Sbjct: 1   MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E    +R  K + P+ ++S  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR
Sbjct: 61  GIEACMRIRKDK-NMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119

Query: 119 SR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +       + + +I  GDL++N D + + V  + I LT KE+ ++ELL+  K   L+  
Sbjct: 120 YQKYNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIR 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++          + V I  LR+K+        YI+T+WG GY +
Sbjct: 180 KIYEEVWKEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228


>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
 gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
          Length = 242

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L + ++  L  E+++V     G + ++      +D IILD+ L    G+
Sbjct: 19  MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIMLPGKDGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  +  TPV +L+   SIED+V+GL  GADDY+ KPF  EEL+ARIR ++RR  
Sbjct: 79  EILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ D + V   G+ I L+ KE+ ++E L   KN  +T++    + +D
Sbjct: 139 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +A   +  I TV G GYV+REN
Sbjct: 199 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 241


>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 230

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED       ++  L S  + V     G   ++  +    D I+LDL L  I G E
Sbjct: 5   KILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGIDGLE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+   A    PV +L+      D+V GL+ G DDYI KPF+  ELV R++A++RRS
Sbjct: 65  VCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRRS 124

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +           LSV+ +A TVE  G  + LT  E+++   L   +    T++  L
Sbjct: 125 TEQPEPRRPGKWSREGLSVDFEAHTVECDGDLVALTATEFKLFSELLQHEGKVRTRDHLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D   E   + +D  I +LR+KL   A   +YIETV G GY  +
Sbjct: 185 DTVWDTHFEGYSRTVDTHIRRLRQKLGPYA---DYIETVRGVGYRFK 228


>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 235

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  A  +   L    + V +   G D +       +DAI+LDL L  + GF
Sbjct: 1   MRVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A+  +P+ +L+    ++D++ GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  EVCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GD+ ++  A++V+  G  + L+ KE+ ++ELL  R    LT+   L+H++D
Sbjct: 121 VERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    ++D ++  LR+K+  A G    IETV G GY LR
Sbjct: 181 LGYDGTSNVVDQYVRYLRRKIDPADGLSR-IETVRGAGYRLR 221


>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 241

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +++ L+ EN+ +     G + +E     ++D I+LDL L    G E
Sbjct: 9   RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++R    
Sbjct: 69  VCKEIRAQK-TTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127

Query: 118 ----RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   L+++ DA  V V G  + LT KEY+++  L+   +    +E 
Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  I +LR+KL+ A       I TVWG GY   
Sbjct: 188 LLKEVWHYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237


>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
          Length = 228

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227


>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 238

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + L+ EN+ +   + G+  +++    ++  I+LD+ +    G E
Sbjct: 6   KILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + L   K+ TPV +L+      ++V G + GADDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCQELHEKKM-TPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSLQ 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   ++++ DA  V   G  ++LT KEY+++  L+   +    +E 
Sbjct: 125 TGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 185 LLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGYKFE 234


>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 226

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  E   ++    G++ +++ +  + D +I+D+ + ++ G+E
Sbjct: 5   RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      +KV+G   GADDY+ KPF+  ELVAR++A+++R R 
Sbjct: 65  LCRELR-DYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS+N       +    + L  KE++++  L+     T T++  +  ++  
Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++ +       +I T+ G GY L 
Sbjct: 184 DYEGDERTVDVHIKRLRERFAQ-PNVPFFIRTIRGLGYRLE 223


>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 229

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARAIRGESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  ++  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 VAPEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium kansasii ATCC 12478]
          Length = 240

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   +  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR   
Sbjct: 75  VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 239


>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 232

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 10  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 70  VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 190 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 232


>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 232

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +DD  +A  IE+ LK E + V     GE  IE+ +    D ++LD+ +  +
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R  K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRT-KQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R       +    S++  G + ++ + +TV V G RI LT KE+ ++ LL+       + 
Sbjct: 120 RFLTLNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSL 179

Query: 172 EMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++      +    + V I  LRKKL         I+T+WG GY  
Sbjct: 180 ENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230


>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 229

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKQLRQRS-AVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 PGSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + K +DV + +LR K+    G   ++ TV G GY   
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 227

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++A  + L+L+SE F V V   G + + L +    D ++LD+ L  + G  
Sbjct: 4   RILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLDGVS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ ++S  +   D + GL++GADDY++KPF    L+AR++A +RR   
Sbjct: 64  VCRLIREES-DVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + ++   DL+++L A  V+  G  +HLT  E++++ +L+ +     ++E  L  ++  
Sbjct: 123 EHE-VLRVSDLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGY 181

Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R    + ++++V I +LR K+ +       + TV G GY 
Sbjct: 182 RQSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGYR 221


>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
          Length = 232

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +DD  +A  IE+ LK E + V     GE  IE+ +    D ++LD+ +  +
Sbjct: 1   MKPITILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R  K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRT-KQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R       +    S++  G + ++ + +TV V G RI LT KE+ ++ LL+       + 
Sbjct: 120 RFLALNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSL 179

Query: 172 EMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     ++      +    + V I  LRKKL         I+T+WG GY  
Sbjct: 180 ENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 230


>gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium
           HTCC2083]
 gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 238

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 148/237 (62%), Positives = 184/237 (77%), Gaps = 1/237 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SI++ML   N NVY T  GE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIDMMLTHANLNVYTTSFGEEGIDLAKLYDYDLILLDLNLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E K++G   GADDY++KPF+++EL+ARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTVEV+   +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK-DETCEYLETA 236
           G DEP++KIIDVFICKLRKKL  A G  +YIETVWGRGYVLR+    +E    L  A
Sbjct: 181 GMDEPKLKIIDVFICKLRKKLCEATGEDSYIETVWGRGYVLRDPVDMEEPAPQLAVA 237


>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
 gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
          Length = 237

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  L+ +++  L+    +      G   ++L +    D ++LDLGL  + G EV
Sbjct: 12  VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGLPGMDGVEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR       V +L+  +   DK+ GL  GADDY++KPF+  ELVARI+ ++RR R  
Sbjct: 72  CRQLRTFS-DCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S++  G L+V+  ++ VE+    + LT  E+ +++ L+      L +    + +
Sbjct: 131 GAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRRQLTDAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +  ++DV I  LRKKL +      +++TV G GY +
Sbjct: 191 WGEDWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 233


>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 248

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   +   + ++ DA++LD+ L D+ GF 
Sbjct: 23  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR    + PV  L+   ++ED+V GL  G DDY++KPF+ EE++AR+RA++RRS  
Sbjct: 83  VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 142

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++++  GDLS++ D+  V   G  I+LT  E++++  L       L+K   L+ 
Sbjct: 143 AIAARHEAVLTVGDLSLDEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+   AG    I T+ G GYVL+ 
Sbjct: 203 VWNYDFGGQANVVELYISYLRKKI--DAGRAPMIHTLRGAGYVLKP 246


>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
           DP4]
 gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris DP4]
 gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris RCH1]
          Length = 229

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +   L++  F V     G DG+E  + +    ++LDL L  + GF+
Sbjct: 5   RILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGMSGFD 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+    +   PV +L+      D++ GL+ GADDY+ KPF+  ELV RIRA+++R 
Sbjct: 65  VCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKRV 124

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G  +           L ++ +A  VEV G    LT  E++++  L   +    T++  L
Sbjct: 125 TGAQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++    E   + +D  + +LR+K+   A     IET+ G GY  +E
Sbjct: 185 NTVWGYEFEGYARTVDTHVRRLRQKIGRFAA---MIETIRGVGYRFKE 229


>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 226

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQLRQRS-TVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+        ++ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGYKFEP 226


>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 242

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ ++  +  + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 88/222 (39%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + +ILDL L  + G EV
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ IL+    IEDKV+GL +GADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 66  ARRIRKTS-NVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI L+ KE++++ELL+       T+      ++ G 
Sbjct: 125 ITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVWPG- 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224


>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
 gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
          Length = 651

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 123/228 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  L   +   L + ++ V V   GE G      +E+D IILD+ L ++ G 
Sbjct: 1   MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R    + P+ +L+   +I  KV+GL +GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 61  SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L+  GDL +N     V   G  ++LT  EY ++ELL        + E  L+ L+ 
Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             D P    +   + +LR KL  A    ++I T+ GRGY L+  + +E
Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAPSTEE 228



 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 2/125 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD+    ++  +LK   F V      +    + +    DA++LD+ +  I GFE
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR        PV  LS ++    + +    G DDY+ KP    EL  RI   ++R 
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQRV 646

Query: 120 RGHAQ 124
           R  A 
Sbjct: 647 RAWAN 651


>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 226

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L  E F V V D G D I        D ++LDL L    G E
Sbjct: 3   RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV +L+   +  DKV GL+ GADDY++KP++  ELVAR+RA++RR   
Sbjct: 63  VCRQLRQRS-SVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+        Y+ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGYKFEP 226


>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
 gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
           [Halomonas elongata DSM 2581]
          Length = 254

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 12/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           RIL +ED+  +   +   L  E  +      GE  +   +       +D ++LDL L  +
Sbjct: 15  RILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLMLPGL 74

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R LR     TPV +++  ++I D V GL+ GADDY++KPF+   L+AR++A++R
Sbjct: 75  DGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALLR 134

Query: 118 RSRGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R R              +V G+L ++ D   V + GH + LT KE+ ++ L +     + 
Sbjct: 135 RHRHPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHSF 194

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           T+   L+ ++    +     ++  I +LR K+        +I+TVWG GY   +  +D
Sbjct: 195 TRGELLDRVWGEEFDGYDHTVNTHINRLRNKIETDPARPRFIQTVWGIGYRFADEERD 252


>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 230

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + L      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L N +   + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKAL-NGSSDGDPIRTVRSAGYSLDLDA 229


>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 229

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   F V + + G +G++     ++D +ILDL L    GFE
Sbjct: 3   KILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I    L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 231

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +N+Y    G++ +++   YE + +ILD+ +    G EV
Sbjct: 5   ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS   
Sbjct: 65  CQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQ 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I      ++    TV+V G  I LT  E+ ++ LL+       + E   
Sbjct: 124 NATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++       K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 184 ERVWNEDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231


>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
 gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
          Length = 224

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L H I   L++E + V     G D +       +DAI+LD  L    GF
Sbjct: 1   MKILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  KI TPV  L+     ED V GL  GADDY+ KPF+ EE++AR+R I++RS 
Sbjct: 61  EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +     DL ++ D K+V   G  I L+ KEY ++E +   KN  L++    ++ + 
Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  IIDV+I  LRKK+ +    K  I+TV G GY+L E 
Sbjct: 181 LDFEDESNIIDVYIRYLRKKIDDDFDVK-LIQTVRGIGYMLTEP 223


>gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
 gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus
           licheniformis ATCC 14580]
 gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580]
 gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2]
          Length = 228

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+ ++    E+    E F       G +G    K  ++D +I+D+ L  + G 
Sbjct: 1   MKILMIEDNLSVCTMTEMFFAKEGFETEFVHDGLEGYNRFKSGDWDLLIIDIMLPSMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R    + P+ +L+   +  D+V G + GADDY++KPF+   LVARI+A+ RR +
Sbjct: 61  TICKKVREES-TVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQ 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEM 173
                       + T    +N   + V + G +I +LT KE+ ++  L        ++E 
Sbjct: 120 NAGRQDSADSDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++  +   + + +DV I +LRKKL + +    Y  TVWG GY   E+
Sbjct: 180 LLEQVWGYQFYGDERTVDVHIKRLRKKLGSDSRPFLY--TVWGVGYKFDED 228


>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 233

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +DD  +A  IE+ LK E + V     GED IE+ +    D ++LD+ +  +
Sbjct: 1   MKPITILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R  K + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRT-KQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R             S++  G + ++ + +TV V G RI LT KE+ ++ LL+       +
Sbjct: 120 RFLTLNQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++      +    + V I  LRKKL         I+T+WG GY  
Sbjct: 180 LENIFQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTF 231


>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 231

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + ++L +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
          Length = 240

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ ++   +E  L    ++V     GE+ + + K    + ++LDL +  + G+ 
Sbjct: 5   KILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDGYG 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +S + D++ GL+ GADDYI KPF+ +EL ARIR+++RR   
Sbjct: 65  VCQELRKES-DVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +        I  G L ++++   V     R+ LTG E+ ++ELL  +     ++   
Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 233


>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +       G D ++    Y  D I+LD+ +  + G  
Sbjct: 9   RILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR A  +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 69  AARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSAY 128

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  GDL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 129 AAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTREQ 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 189 ILKTVWGFDFEPSSNSLDVYVMYLRRK-TEAGGESRLVHTVRGVGYVLR 236


>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
 gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
          Length = 238

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +++ L+ E + +   D G+  +E+    ++D I+LDL +    G E
Sbjct: 6   RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K +TP+ +L+      ++V+G + G DDYI KPF+  E+V R++A++RRS  
Sbjct: 66  VCKGVREKK-ATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + + V   L+++ DA  V   G+ ++LT KEY+++  L+   +    +E 
Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            L  ++      +++ +D  + +LR+KL   +      I TVWG GY   
Sbjct: 185 LLKEVWQYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFE 234


>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 256

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF+
Sbjct: 17  RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  G
Sbjct: 77  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           HA          ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++
Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N 
Sbjct: 197 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDPESA-HIDSIRGVGYKLVVNP 248


>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
 gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
          Length = 223

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   LK  N++V     GE+ ++   + ++D II D+ + ++ G+
Sbjct: 1   MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E ++ LR +K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL ARIR ++RR+ 
Sbjct: 61  EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V   G  I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    I+DV I  +RKKL +    K  I T  G GY ++E
Sbjct: 181 YDYDGASNIVDVIIKNIRKKL-DNGTDKTIIYTKRGLGYFVKE 222


>gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 253

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  I + L + NF V+          L +    D ++LD  L D  G  
Sbjct: 22  QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      PV +L+      D V GL+SGADDY++KPF+  EL AR +A++RR   
Sbjct: 82  LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLS 141

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A +   I    L ++LD++ V    + + LT KE+ ++  L+       ++   L+ ++
Sbjct: 142 AAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAVW 201

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R +     ++  I +LR KL++  G +  ++TVWG GY  
Sbjct: 202 GYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 275

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           R+L+++DD  +A      L    ++V   D G   +E       D ++LDL L   + GF
Sbjct: 44  RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
           EV R +R      PV +L+     +D++ GL++GADDY++KPF+  ELV R+ A++   R
Sbjct: 104 EVCRRIRARGP-VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWR 162

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+     + I    + +   A+     G  + LT +E+ ++           T+E  +  
Sbjct: 163 RTEPGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMRE 222

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      ++  + V + +LR K+         I+TVWG GY  
Sbjct: 223 VWGWDF-GDLSTVTVHVRRLRGKVETDPARPALIQTVWGVGYRF 265


>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A   +  L+   F+V +   G+ G++     +F+ IILDL L ++ GFE
Sbjct: 3   KILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKKVREKK-NTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRFK 228


>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
 gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
           HTCC2649]
          Length = 237

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +   L+   F V     G + ++L   +  D  +LD+ L D+ GF V
Sbjct: 12  LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFAV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR +    P+  ++   S++DK+ GL  G DDY++KPF+ EE+VARIRA++RR+RG 
Sbjct: 72  TRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGD 131

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   DL ++ D+  V   G  I  +  E++++  L L  N  L+K   L+H+++
Sbjct: 132 IDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E  I++ +I  LR+K+ +  G    I T  G GYVLR
Sbjct: 192 YDFRGESGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLR 232


>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 233

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 230

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L K   +D I+LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIRE-KSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 249

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD A++  + + L+   + V+    G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +T  PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V +  LR KL        YI+TV+G GY L     +ET E
Sbjct: 183 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNSEETAE 239


>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 225

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
 gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
           33656]
          Length = 229

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A   +  L+   F V V + G  G+      +FD  ILDL L  I GFE
Sbjct: 3   RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKRIREKK-NTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 KEIWNMDSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRFK 228


>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
 gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
          Length = 231

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ + +   ++ D +ILD+ +    G EV
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKRNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RRS   
Sbjct: 66  CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124

Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + +    +       ++    TV+V G  I LT  E+ ++ LL+       + E    
Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++       K + V I  LR+KL     G+  I TVWG GY + +
Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 227

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++DDK + + I++ L++E +N+     G + + +    +FD +ILD+ +  + G 
Sbjct: 3   INILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILDGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                +R    + P+  LS      DK++GL  GADDY+SKPF   EL+AR++A +RR +
Sbjct: 63  SACIKIRE-NYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYK 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S++   DL++N D   V V+G ++ LT KE+ ++E L+  +    + +   
Sbjct: 122 KFNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFSVQKLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          I V I  LR+K+        Y++TVWG GY +
Sbjct: 182 EIIWKEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGYKI 227


>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 238

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  + +    ++  I+LD+ + +  G EV
Sbjct: 7   VLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPEKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS   
Sbjct: 67  CAELREKK-TTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ L+V   L+++ DA  V   G  ++LT KEY+++  L+   +    +E  
Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 234


>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
 gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
          Length = 255

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L+  + + L+ E   V     G   +   + +  D ++LD+ L D+ G  
Sbjct: 28  RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS  
Sbjct: 88  VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL ++ D+  V   G  +HLT  E++++  L       L+K   L+ 
Sbjct: 148 AQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  +++++I  LR+KL    G    I T  G GY+++ 
Sbjct: 208 VWSYDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLIKP 253


>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
          Length = 226

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  L + +++VY    G   +E  +    D ++LDL L D  G 
Sbjct: 1   MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R    + P+ +L+  S  +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ 
Sbjct: 61  TVCRKIREIS-NVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTE 119

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +          +L V  D++ V +    ++LT  E+ ++  L    N   ++   +  
Sbjct: 120 TLSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDLIEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ N A    YI TV G GY  
Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 229

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARSIRGESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 AAPELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 234

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   I   L+  N+ V   D G D +E+ +    D +I+DL L  + G E 
Sbjct: 5   ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R      P+ +L+  +S  DK+ GL+ GADDYI+KPF+ +EL++RI+ I+RR+   
Sbjct: 65  TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   +++++     V+    +I LT  E++++  L    N  L+++  L  
Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      + +I+D+ I  LR KL N       I+T+ G GY       D
Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKKGD 234


>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
          Length = 228

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  L + +++VY    G   +E  +    D ++LDL L D  G 
Sbjct: 3   MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R    + P+ +L+  S  +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ 
Sbjct: 63  TVCRKIREVS-NVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 121

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         G+L V  +++ V +    ++LT  E+ ++  L    N   ++   +  
Sbjct: 122 TLSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ N A    YI TV G GY  
Sbjct: 182 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 225


>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 242

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   + + L+ E F+V+    G+  +        D ++LD+ L DI GF 
Sbjct: 19  KVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPDIDGFM 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + + LR +    P   L+   + EDKV GL  G DDY++KPF   ELVAR+RAI+RR  +
Sbjct: 79  LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAGA 138

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++ + + V   G  + LT  EY+++  L       LT+   L+H++
Sbjct: 139 ADSTPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLLDHVW 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E ++++ ++  LR+K+       + I TV G GYVLR
Sbjct: 199 GHDFGGEARVLETYVSYLRRKIDPVP--PSLIHTVRGVGYVLR 239


>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 227

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V V   G D +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A   +PV +LS   ++ D+VRGL  GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++   +TV   G  + L+ KE+ ++E L       L +   L H++D
Sbjct: 121 HERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    ++D ++  LR+K+ +   G + +ETV G GY LR +A+ +
Sbjct: 181 FAYDGTSNVVDQYVAYLRRKI-DKPFGTSQLETVRGAGYRLRTSARTD 227


>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 218

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 5/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V 
Sbjct: 2   LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGH 122
           + +R      P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++  
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQE 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++   
Sbjct: 121 QQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 YAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 217


>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 225

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRETH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
 gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V V + GE G++     EFD  ILDL L  I GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQIRDKK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A  +I    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRFK 228


>gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2]
 gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2]
          Length = 242

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 130/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L  ED++ L   +   L+ E + V     G + +E     ++DA+ILD+ +  + G+
Sbjct: 19  MRLLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIMMPVMDGY 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV  LS   SIED+V GL SGA+DY+ KPF+  EL+ARIR ++R S+
Sbjct: 79  AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   SL+  GDL+++    TV      I L+ KEY ++E + L KN  L++E    H++D
Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   ++DV+I  LRKK+ + A     I TV G GYV++E +
Sbjct: 199 FDYAGGTNLVDVYISYLRKKI-DGASTCKLIHTVRGSGYVIKEPS 242


>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
 gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 243

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 113/234 (48%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F + + + G+    +      D I+LDL +    G  
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   +  +
Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVFVPDGAN 243


>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
 gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
           15579]
          Length = 227

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + IE+ LKSE ++V     GE+ + L   Y +D +ILD+ +  + G  
Sbjct: 4   KILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLDGIL 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K + P+  LS      DK++GL  GADDYISKPF   EL+AR++A +RR + 
Sbjct: 64  TCIKIRE-KFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKK 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++++I   DL +N+D   V V+G  I LT KE+ ++E L+  K    + E    
Sbjct: 123 FNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +       + V I  +R+K+        YI+TVWG GY +
Sbjct: 183 TVWKEKFVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGYKI 227


>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
 gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces clavuligerus ATCC 27064]
 gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
           [Streptomyces clavuligerus ATCC 27064]
          Length = 226

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L  E F V  T  G   +EL +  E+DAI+LD+ L  + G 
Sbjct: 1   MRILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR  +I TPV +L+      D+  GL +GADDY++KPF+   LVAR+RA+VRR R
Sbjct: 61  RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL V+   +  E  G  + LT +E+ ++  L+ ++   + K   L+H++ 
Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +V +++V++  LR+K+ +   G+  I TV G GY L +  
Sbjct: 181 -DFEGDVNVVEVYVSALRRKI-DTPFGRRTIHTVRGAGYRLEDTG 223


>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 239

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V+    G + I      + D ++LD+ L D+ GF 
Sbjct: 12  RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGFT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+  L+     +DKV GL  G DDY++KPF+ EE+VARIRA++RR+ G
Sbjct: 72  VTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHG 131

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+    S +V  DL ++ D+  V      I L+  E++++  L L     ++K   L+H
Sbjct: 132 GAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDH 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D     EV I++ +I  LR+K+     G+  I T  G GYVLR
Sbjct: 192 VWDYDWSGEVGIVESYISYLRRKI--DVIGEPMIHTKRGIGYVLR 234


>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 224

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I+TV G GY+L    
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDCD-----VIQTVRGLGYLLTPPP 220


>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
 gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
 gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
 gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
 gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
 gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
 gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
 gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
 gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
 gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
 gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
 gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
 gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
 gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
 gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
 gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
 gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
 gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
 gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
 gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
 gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
 gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
 gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
 gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
 gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
 gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
 gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
 gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
 gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
 gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
 gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
 gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
 gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
 gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
 gi|383762|prf||1904198A vanR gene
          Length = 231

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     E D  ILD+ L    G  
Sbjct: 4   KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+G  +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E+  
Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 228

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED +     ++  L +  F+V   + G+ G+ L   ++ D I+LDL +    G E
Sbjct: 5   KILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGTDGLE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+    +   PV +L+      DK+ GL+ GADDY+ KPF+  ELV RI+AI+RR 
Sbjct: 65  VCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRRY 124

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +A  L     L ++ +A  + + G    LT  E++++ +L        T++  L+
Sbjct: 125 GAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   E   + +D  + +LR+KL   A    +IET+ G GY  +
Sbjct: 185 TVWDTHFEGYSRTVDTHVRRLRQKLGPYA---PWIETIRGVGYRFK 227


>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 237

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  ++L L+ E F++     G  G+ + +   +DA+ILDL L  I G E
Sbjct: 6   RILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   +V GL+ GADDY++KPF+  ELVAR++A+ RR   
Sbjct: 66  ICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +++      ++    L ++  ++ V +    + LT +E+ ++   +       ++   L
Sbjct: 126 MSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           N ++  + E     ++  I +LR KL         I TVWG GY      ++
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGYKFAAAPQE 237


>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
 gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
           ATCC 51142]
          Length = 237

 Score =  276 bits (708), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 118/240 (49%), Gaps = 14/240 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  I+  L+ E+F+  V   G   ++L +    D IILDL L  + G 
Sbjct: 1   MKILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGL 60

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R         + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLT 170
           S    G   ++  T    V+LD  +   +        + LT  E+ ++           +
Sbjct: 121 SLRHGGSQNNVYETPHFMVDLDKHSAVKKLEDNTEDTLELTTLEFNLLSTFMSYPGRVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +   ++ L+      + +++D  + +LRKK+        +I+TV G GY      +DET 
Sbjct: 181 RTQLIDKLWGNDFFGDERVVDTHVRRLRKKIEPDTANPTFIKTVVGVGYKF----EDETS 236


>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 251

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   ++D+ L  + G 
Sbjct: 29  MRILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLPGMDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K++TP+ ILS   S+ED+VRGL++G+DDYISKPF+  EL+AR++A++RRS 
Sbjct: 89  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRST 148

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +  G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 149 SASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 208

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+      +  + T+ G GYVL+E
Sbjct: 209 DYHFDPQTNLVDVLVCRLRNKIDRD-YDRKMLHTLRGVGYVLKE 251


>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 233

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L++ED+ +L   +   L+ E + V     GE+ + L    + D +ILD  L  + 
Sbjct: 1   MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLS 60

Query: 59  GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV R LR        P+ +L+      D++RGL +GADDY+SKPF+  EL+AR++A++
Sbjct: 61  GIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALL 120

Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR++   A+  +   D+ ++L A  V   G  IHL   E+++++ L        ++E  L
Sbjct: 121 RRAQPTSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++      E + +DV I +LRK L N     + I TV   GY L  N 
Sbjct: 181 NAVWGPDIYVEPRTVDVHIRRLRKAL-NGEASTDLIRTVRAAGYALDTNP 229


>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 240

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 119/233 (51%), Gaps = 14/233 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--------FYEFDAIILDLG 53
            +L++ED+++L+  +  +L+ E F V     G   ++               D ++LDL 
Sbjct: 8   HVLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLM 67

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L  + G EV R LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIR
Sbjct: 68  LPGMSGTEVCRQLRSTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIR 126

Query: 114 AIVRR-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A++RR     +   A S+I  G ++++++   V V G  + L  KE+ ++E L       
Sbjct: 127 AVLRRGGEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRV 186

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LT+   ++ ++      + K +DV + +LR K+         + TV G GY  
Sbjct: 187 LTRAQLIDRIWGSDYVGDTKTLDVHVKRLRGKIEEDPSSPVQLLTVRGLGYKF 239


>gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 225

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  + G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVVKTLRTTR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +    K  I TV G GYVL 
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDNFPVK-LIHTVRGVGYVLE 220


>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F V V + G+    L      D I+LDL +    G  
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+AR+ A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRPA 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241


>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 231

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  IEL LK E ++VYV   G++G++  +    D I+LD+ L  I G E
Sbjct: 5   KILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGINGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +++    I D+V GL SGADDY++KPF  EEL+ARIRA +R+S+ 
Sbjct: 65  ICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++   + V+     I LT +EY ++E L   K   LT++  L +++
Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +  ++DV+I  LR K+ +       I TV G GY   E   ++
Sbjct: 184 GYSYMGDTNVVDVYIRYLRSKV-DDGFKTKLIHTVRGVGYKCEERENED 231


>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 239

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    L+++  A+   V G R+ LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239


>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 232

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L +E F V     G   + L +    D +ILD+ L  + G EV
Sbjct: 6   ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L     +  V +L+  +   DK+ GL  GADDY++KPF+  ELVAR++AI+RR+R  
Sbjct: 66  CRRLHQE-TAVYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRAP 124

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A     +  ++   LS++ + + V+    +I LT +E+ ++  L+       T+E  L  
Sbjct: 125 AGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        +++DV +  LR+KL +  G  +Y++TV G GY     ++
Sbjct: 185 VWGADFAGIDRVVDVHVGTLRRKLEDD-GDASYVQTVRGVGYKFVGGSR 232


>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
 gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
          Length = 224

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   ++  L  E++       G D ++     ++D IILD+ L  I G 
Sbjct: 1   MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R     TPV  L+    IED+V+GL  GADDY+ KPF+ EEL+AR+R ++RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++ ++K V     +I L+ KE+ ++E +   +N  L++E    H ++
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    ++DV+I  LRKK+    G K  I TV G GYVLR+ 
Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRKE 223


>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
 gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
           ZC1]
          Length = 230

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD+A+   ++  L  E FNV     GE+ +  C    FD +ILD+ +  + G E
Sbjct: 4   HILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+  
Sbjct: 64  VLKIIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q ++   +L +++   ++   G  I LT KE+ +++L    +    TKE   
Sbjct: 123 YSSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +  II+V I +LR+K+ +      YI+T+WG GY   
Sbjct: 183 QMIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 229


>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
 gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
           F0264]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 129/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +   I  +LK E + V     G++ ++     ++DA+ILD+ L    GF
Sbjct: 17  MRILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDGF 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+    +ED+V+GL  GADDY+ KPF  EEL+AR+R ++R+S 
Sbjct: 77  EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +Q  ++    +L+VN +  TV      I L+ KE+ ++E L   K   ++KE    H+
Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   E    I++V+I  LRKK+ +       I T+   GY+L+
Sbjct: 197 WDFDYEGGSNIVEVYIKFLRKKIDDNFS-PKLIHTIRRVGYILK 239


>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 224

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGKVSVSGNPVKMTSHEYRLLSYLMHHSGRVVSRSELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I+TV G GY+L    
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDCD-----VIQTVRGLGYLLTPPP 220


>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
 gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
           49176]
          Length = 245

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 20/238 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ ++  I L L  E F+    + G+  I L + Y+ D I+LD+ L    G++
Sbjct: 6   KILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDGYD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    I DKV GL+ GADDY+ KPF+ +ELVAR++A++RR   
Sbjct: 66  VCREIRKTS-KVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124

Query: 122 HAQ-----------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                               + ++  DL +NL   +V     R+ +  KE ++   L+  
Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N   T+E  L+ ++      + + +DV + +LR+K+++ A  +  + TVWG GY   
Sbjct: 185 PNQVFTREQLLDRIWGYEYIGDTRTVDVHVKRLRQKINDHA--EWRLSTVWGVGYKFE 240


>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
 gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
          Length = 231

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   + + L++E +++Y    G++ + +   Y+ D +ILD+ +    G EV
Sbjct: 6   ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKRNGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR++A++RRS   
Sbjct: 66  CQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSFQ 124

Query: 123 AQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + +    +       ++    TV+V G  I LT  E+ ++ LL+       + E    
Sbjct: 125 QVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++       K + V I  LR+KL     G+  I TVWG GY + +
Sbjct: 185 RVWNEDGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231


>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
          Length = 226

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LD+ L  + G +V 
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR  K S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   + 
Sbjct: 62  KQLRA-KSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNE 120

Query: 124 QSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +  G + ++++   V V G  + L  KE+ ++E L       LT+   ++ 
Sbjct: 121 AATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR K+    G   ++ TV G GY L E
Sbjct: 181 VWGADYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 226


>gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 243

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A+A ++ L L++  + ++    G   +       +D ++LDL L    G++
Sbjct: 4   QLLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLMLPGADGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R LR      PV +LS  S+   +V GL+ GADDY++KPF+  ELVAR+RA++R    
Sbjct: 64  VCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRRIEQ 123

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS     S +  G   ++   + +      + LT +E+ ++  L+       ++   L 
Sbjct: 124 LRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPGRVFSRGELLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++    +     ++  I +LR K+ +       I TVWG GY   E  
Sbjct: 184 RVWGAAFDGYEHTVNSHINRLRTKIEDDPRDPRRIVTVWGVGYRFEEKP 232


>gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 225

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L+   F   V   GE G++  +   +DAIILD+ L    GF
Sbjct: 1   MRVLIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R     T V +L+    + D+V GL++GADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  EILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L        G  + LT KE++++ LL+ R    +++ +    ++D
Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    ++DV + +LR KL +    +  I TV G GYVL +  
Sbjct: 181 INFDSGTNVVDVHMYRLRAKL-DDPFSRRLIHTVRGVGYVLEDRG 224


>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 242

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I  G++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
 gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
           MR-1]
          Length = 239

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F     +  +  I L K    D I+LD       G +
Sbjct: 14  RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 73

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 74  LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 134 APTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 235


>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
 gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 241

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 129/237 (54%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L LK E+F ++    G++   L    ++  I+LDL L ++ G EV
Sbjct: 5   ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSS 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEVKSNDEPT 240


>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKQLRQRS-AVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 PGSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + K +DV + +LR K+    G   ++ TV G GY   
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228


>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
 gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 229

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A   +  L+   F V + D GE G++     +FD +ILDL L  + GFE
Sbjct: 3   RILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R AK +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREAK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SRIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 223

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 130/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ 
Sbjct: 63  SLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++        +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 122 GESEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 220


>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
 gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
 gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
           1,231,501]
 gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 226

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  L + +++VY    G   +E  +    D ++LDL L D  G 
Sbjct: 1   MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R    + P+ +L+  S  +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ 
Sbjct: 61  TVCRKIREVS-NVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         G+L V  +++ V +    ++LT  E+ ++  L    N   ++   +  
Sbjct: 120 TLSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ N A    YI TV G GY  
Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
 gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
          Length = 229

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARAIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 AAPELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
 gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
           HTCC2503]
          Length = 230

 Score =  276 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +E  L  E +   + + GE+ +   +  + D I+LD  L  + G E
Sbjct: 5   RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR+   +   P+ +L+  +   D+VRGL +GADDY+ KPF+  EL +RI+A++RR+
Sbjct: 65  VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRA 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R       +  GD+ ++  A  V      +HL   E+++++ L        ++E  LN +
Sbjct: 125 RPSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E + +DV I +LRK L NA G +N I TV   GY L 
Sbjct: 185 WGSDVFVEARTVDVHIGRLRKAL-NAHGHQNPIRTVRSAGYALE 227


>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 229

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++A+   + + L+ E F+V     G+  +        D ++LD+ L DI GF 
Sbjct: 6   RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGFA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR A    P   L+   + EDKV GL  G DDY++KPF   ELVAR+RAI+RR+  
Sbjct: 66  VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGM 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   DL ++ + + V   G  + LT  EY+++  L +     LT+   L+H++
Sbjct: 126 ADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + ++++ ++  LR+K+ +A      I TV G GYVLR
Sbjct: 186 GHDFGGDARVLETYVSYLRRKIDDAP--PALIHTVRGVGYVLR 226


>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 227

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + IL+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G    +    I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + KI+DV I +LR K+   +    YIETVWG GY  +
Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226


>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 226

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F+V V   G   +   + +  D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V RALR    + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRALRQRS-TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G + ++++   V V G  + L  KE++++E+        LT+   ++ +
Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGYKFEP 226


>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 226

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L++E F+      G+  +   +  + D ++LD+ L    G +
Sbjct: 4   RVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKDGTQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VAREIRAESG-VPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                ++ GDL +++   TV   G RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PGPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGYK 221


>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 225

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G
Sbjct: 63  VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 242

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I   ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 236

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +AH I+L L+ E F   ++  G + + + +    D IILDL +  + G 
Sbjct: 1   MDILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMIPGLDGL 60

Query: 61  EVLRALRVAKISTP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D+V GL +GADDY+ KPF+  EL+AR+RA++RR
Sbjct: 61  EVCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRR 120

Query: 119 S--RGHAQSLIVTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S  +G    +  T    V++D +T   Q        + LT  E+ ++            +
Sbjct: 121 SLRQGGQNQVNRTQHFIVDVDQRTASRQMNSQQPEVLDLTTLEFNLLTTFVSNPGRVWNR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++ L+      + +++D  + +LRKK+   +    +I+TV G GY   +  
Sbjct: 181 TQLIDKLWGDNFFGDERVVDTHVARLRKKIEPDSASPTFIKTVVGVGYKFEDPP 234


>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 247

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 128/242 (52%), Gaps = 7/242 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +       G  + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   +  ++ E   
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPQSGEGAT 242

Query: 235 TA 236
           T+
Sbjct: 243 TS 244


>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 223

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 90/224 (40%), Positives = 136/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L   I   LK  N++V     GE  ++   + E+D II D+ +  I G+
Sbjct: 1   MKILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LRV   STPV +L+   S++DK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V      I LTGKEY+++E L   K   +++E  LNH++D
Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    IIDV +  +RKKL +    K  I T  G GY ++E+
Sbjct: 181 YDYEGVSNIIDVIVKNIRKKL-DVGSKKPIIHTKRGLGYFVKED 223


>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 225

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 127/224 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ LL+EDD+ +A S+   L   N+ + V   GE+G +    +++D I+LD+ L  + G 
Sbjct: 1   MKFLLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR      PV +L+   S  DKV GL +GADDY+ KPF+ +EL+ARIRA++RR  
Sbjct: 61  ELCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++    TV  +   + +T KEYQ++EL        L++   L+HL+ 
Sbjct: 121 TTISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    + V I  +R+KL  A    ++IETV+G GY L +N
Sbjct: 181 SIDPPGQDTVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224


>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
 gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +D+K +   +E   K E +  ++   G   +EL +  + D ++LD+ +  + GFEV
Sbjct: 4   LLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++      +++ GL  GADDYI KPF+  E++ARIRAI+RR   +
Sbjct: 64  CREIRKTS-NVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRISQN 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    ++   +L +NLD   V +    + LT KE +++  L+   N   +++  LN ++
Sbjct: 123 DEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNSVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +++ +D  I +LR KL +    +  I+T+WG GY   E   +E
Sbjct: 183 GYDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKFGEKTNEE 231


>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
 gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
          Length = 225

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  ++L L+ E +   + + G +G+      +F  ++LD+ L  + G E
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLPGLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   + TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++  
Sbjct: 65  VLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +  GDL VN   + V+     + LT +E+ ++  L       LT+E  L  ++  
Sbjct: 125 DPGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWGF 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  ++DV+I  +RKK+ +    K  I TV G GY ++E
Sbjct: 185 DYLGDTNVVDVYIRYIRKKM-DYPYEKQLIHTVRGVGYAIKE 225


>gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
 gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217]
          Length = 238

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 152/224 (67%), Positives = 184/224 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+++TP+ ILSG    + K+RG   GADDY++KPF+++ELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARVATPILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG ++VNLDAKTV+  G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKLS A  G NYIETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEATDGANYIETVWGRGYVLRDP 224


>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 230

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+ A+   I + LK   + V   + G + ++  +   FD ++LD+ + ++ GF 
Sbjct: 3   KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V    R       + +L+  +  EDKV GL  GADDYI+KPF+  EL+ARI++++RR   
Sbjct: 63  VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R      +V+G   ++L AK V+  G  + +T  EY ++      ++  ++++  L+ 
Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV I +LR+K+        +IET+WG GY  R
Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWR 227


>gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 228

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ + + I   LK E +++     G++ +E      F+ +ILDL L  + G E
Sbjct: 5   KILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEKY-NNSFNLVILDLMLPYVDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R    + PV ILS M    D++ GL  GADDY+ KPF+  ELVAR++A +RR   
Sbjct: 64  VLRQIRTVN-NAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYVY 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  SL+    L ++     V  +   ++LT  E+++++      +   TK    N+
Sbjct: 123 YNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFNN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +   + V I +LR K+ +      YI TVWG GY L E
Sbjct: 183 VWKNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKLGE 228


>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 229

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARAIRGESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  L+  G     +S+++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 VAPELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 253

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ LA  I + L + NF V+          L +    D ++LD  L D  G  
Sbjct: 22  QILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRMLPDGDGLL 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      PV +L+      D V GL+SGADDY++KPF+  EL AR +A++RR   
Sbjct: 82  LCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHLS 141

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   I    L ++LD++ V    + + LT KE+ ++  L+       ++   L+ ++
Sbjct: 142 ATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAVW 201

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R +     ++  I +LR KL++  G +  ++TVWG GY  
Sbjct: 202 GYRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243


>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 229

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +      + D ++LDL L    G E
Sbjct: 8   RVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+  S   D V GL+SGADDYI KPF  +ELVARIRA +RRS  
Sbjct: 68  VCRLIRAESG-VPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++   +V+ +   I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 127 PAPEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225


>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 247

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 31/249 (12%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+ + I   L +E   VY  + G   + L + ++   IILD  L  + G  
Sbjct: 3   RVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R+     P+ +L+  +   D++ GL+ GADDYISKPF+  EL+AR+RAI+RR   
Sbjct: 63  VCRRVRL-NYLMPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILRRVDL 121

Query: 119 ------------------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
                                   +    Q  I+ G L ++ +A+  ++ G  I LT +E
Sbjct: 122 DQRLAQTLQQARTEPPVAQISPTITPTPVQPPIIRGPLEIDPNARIAKLHGESILLTPRE 181

Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           Y+++ LL+       ++E  L  L+    +   + +D  + +LRKKL    G    I TV
Sbjct: 182 YELLILLASHPGRAFSREFLLQQLWGYDYDGFDRTVDTHVTRLRKKLG---GVGEKIVTV 238

Query: 215 WGRGYVLRE 223
           W  GY   E
Sbjct: 239 WSVGYRFVE 247


>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 227

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   I   LK E ++V     GE+ +       +D I++D+ +  + G+
Sbjct: 1   MRVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K STPV  L+   +IED+V+GL  GADDYI KPF+ +EL+ARIR ++RR+ 
Sbjct: 61  EVLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   DL ++   + V+     I L+ KE+ ++E +   +   L++E    H+++
Sbjct: 121 GSVSNELRVADLVMDCATRIVKRGDKEIDLSAKEFAILEYMMQNQGVVLSREKLEEHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +    +IDV+I  LR K+         I T+ G GYVL++   +
Sbjct: 181 YDYQGASNMIDVYIRYLRIKMDKDF-EPKLIHTIRGVGYVLKDKESN 226


>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + +EL +   FD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 228

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+GIE  + ++ + ++LD+ L  + G E
Sbjct: 3   KILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +S    I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I+TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYRWQ 226


>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
 gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F + + + G+    +      D I+LDL +    G  
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVFVPDG 241


>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
           WAL-14163]
 gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 232

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 127/230 (55%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     GE+ I + K  E+D ++LD+ L    GFE
Sbjct: 3   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +++      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 63  VCQAIREFS-EMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAK 121

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++         +  GDL ++ D++ V +    I+LT KE+ ++ELL    N   ++E  
Sbjct: 122 KSKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREEL 181

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++  +     +V+ +DV + +LR+K+  +     Y+ T WG GY  R
Sbjct: 182 LRFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYFR 231


>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V + G   +        D ++LDL L  + G E+
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSGTEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +ALR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKALRTRS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122

Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A+  +  G      + ++++   V V G +I L  KE+ ++E L       LT+   ++ 
Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 VWGADYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKLE 227


>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 227

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+ ++A      L+  +F + V   G+ G+E      FD +ILD+ L  + GFE
Sbjct: 3   KILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VCKQIRAAK-DIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    + +I    L+++  A+ V V    +  T KE+ +++ +    N  L+KE     
Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      ++  + V I KLR+KL        Y+ETVWG GY  
Sbjct: 182 IWGFDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRF 225


>gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 234

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 146/220 (66%), Positives = 180/220 (81%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ ++ +IE MLK+E   V  T LGEDG+E+ K Y++D I+LDL L D+ G+EVLR
Sbjct: 1   MVEDDQLMSRAIEAMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYEVLR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR A+I TPV ILSG+S  + K++GL SGADDY++KPF+K ELVARI+AIVRRS+GHAQ
Sbjct: 61  RLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGHAQ 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           S+I TG LSVNLDA+TV V G  +HLT KEY ++ELLSLRK  TLTKE FLNHLY G DE
Sbjct: 121 SVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGIDE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           PE+KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+ 
Sbjct: 181 PELKIIDVFICKLRKKLATATGGESYIETVWGRGYVLRDP 220


>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
          Length = 239

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I   DL +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 245

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M++L+IED+K+++  + +  + E ++V     G + +++       +D I LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163
           +   AQ+               I T    +N + +   + G  I  LT KE++++  L+ 
Sbjct: 121 AHTEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238

Query: 224 NAKD 227
           +  D
Sbjct: 239 SEVD 242


>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 226

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++++  +  +L  E ++V V   G   +     +  D ++LDL L    G E
Sbjct: 3   RILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGASGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K   P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR+  
Sbjct: 63  VCRQLRA-KSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     ++  G + ++++     V+G  + L  KE++++E+L       +T+   ++ +
Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+         + TV G GY   
Sbjct: 182 WGQDYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGYKFE 225


>gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
 gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis
           SKA53]
          Length = 237

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 155/224 (69%), Positives = 184/224 (82%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   A SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L DI G 
Sbjct: 1   MRVLLVEDDPTTAKSIELMLTHANLNVYTTDLGEEGIDLAKLYDYDLILLDLNLPDINGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ IL+G    E K++    GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLSRIDTPILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTVEV G+ +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE+KIIDVFICKLRKKLS AA G+N IETVWGRGYVLR+ 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSEAADGENNIETVWGRGYVLRDP 224


>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 238

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 16  RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 76  VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 196 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 238


>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
           kansasii ATCC 12478]
          Length = 227

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++ +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +         +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 227

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++++   + +  + ENF V   + GE+G+      + D  ILD+ L  + GF
Sbjct: 1   MKILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +     + +L+      DK+ GLQ GADDY+ KPFN  E+  R++A++RR  
Sbjct: 61  EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G         I   +  ++L ++++  +   I +T KE+ ++++         T++  LN
Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + KI+DV I +LR K+   +    YIETVWG GY  +
Sbjct: 181 LVWGIDFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYRWK 226


>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++    E F V++   G D  ++ +  + D +ILDL L    G EV
Sbjct: 18  VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++   P+ +L+    I+D+V GL +GADDY++KPF   EL+AR RA++RR   +
Sbjct: 78  TRRLRRSR-DLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++    +++N     V      I  T +E+ ++E   +     L+++M ++ ++   
Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWGYD 196

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  I++V+I  LR+KL +       ++TV G GY LR
Sbjct: 197 YMGDDNIVEVYIRHLREKLHDTP--PRLLQTVRGVGYTLR 234


>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 271

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E ++V     G+  + L +    D I+LD+ L DI G E
Sbjct: 24  RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  +   PV  L+   S+ED+V GL +G DDY++KPF+ EE+VAR+R ++RR+  
Sbjct: 84  VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGA 143

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   ++ +V GDL+++ D+  V+  G  IHLT  E++++  L       ++K   L+ +
Sbjct: 144 SAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  I++++I  LR+K+   AG +  I T+ G GYVL+ 
Sbjct: 204 WQYDFGGQANIVELYISYLRRKI--DAGREPMIHTLRGVGYVLKP 246


>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 239

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    L+++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRLDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQRDA 239


>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 635

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 124/223 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD + + +I   L  + + V   + GE G+EL + + +D I+LD+ L  + G 
Sbjct: 1   MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  +  TP+ +L+  +   D V GL++GADDY+ KPF+  EL+ARI+A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N     V  QG  +HLT  EY ++EL         ++++ ++ ++ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               P  + I   I  LR+KL      +N I+TV+G GY L E
Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223



 Score = 93.0 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LI+DD      ++  L    FNV      +    + +    D +ILDL +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
            +A+R      S P+  LSG    E   + L  GAD Y+ K    EEL+
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618



 Score = 39.5 bits (92), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 28  YVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILSGMSSIE 85
                 ++        +   +++DL L  +   G   L  LR  K + P  IL   + + 
Sbjct: 410 IAVSDLKEAKSFLTQTQPRGLVIDLDLLESREEGLIFLEQLRQEKTNLPFIILDTYNDLS 469

Query: 86  DKVRGLQSGADDYISKP-FNKEELVARIRAI 115
            ++   + G   ++ KP  +   L A I+ +
Sbjct: 470 YRLEIARLGKGLFLQKPLTSDRLLKAAIKVL 500


>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 239

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSTAEKMVTFGSYQLNLATRELSRDGEPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +N           + IDV + +LR+ L        Y++TVWG GYV   +   E
Sbjct: 186 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDGDGE 239


>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 245

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +++IED+  +A S+ + L  E   V V   G   +++ +    D +ILDL L DI G  
Sbjct: 18  HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR      P+ IL+    ++++V+GLQ GADDYI KPF+ +EL+AR+ AI RR+  
Sbjct: 78  VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    LS+NL+ + V + G  I LT  E+ ++E          T++  L+ ++ 
Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                +  I++V I  LR+K+ +    +  I TV+G GY LR +  DET
Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPD--DET 242


>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
 gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
           7002]
          Length = 242

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    + V     GE+ +      + D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGGTGIPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
 gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
          Length = 220

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V     G     +     +D ++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V V G  + LT  E++++ +L  R    +++     H+Y 
Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDVFI +LRKKL       + IETV G GY L
Sbjct: 181 QDHDRDSNTIDVFIGRLRKKL-----PPDTIETVRGLGYRL 216


>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
 gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
          Length = 240

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 7   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 67  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I   DL +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 127 MGQNILLAGGLICCHDLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + L L+ E + V     GED +   +  + D  ++D+ +  + G+ 
Sbjct: 3   KILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDGWA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  ALR      P+ +L+       KV+G + GADDY+ KPF+  EL+ R++A+++R R 
Sbjct: 63  LCSALRE-SFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++  G LS+N     +   G +I L  KE++++  L+     T T+E  +  L+  
Sbjct: 122 ASSQVVELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGM 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E + + +DV I +LR++      G   I T+ G GY L E A
Sbjct: 182 NYEGDERTVDVHIKRLRERFPEEDFGFR-IVTIRGLGYRLEERA 224


>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 231

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
          Length = 226

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + I++ L    F+V     G+ G++  K   +DA++LDL L  + G 
Sbjct: 6   MRILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMDGM 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R  KI TPV IL+   ++ D+V GLQ GADDY+ KPF   E++AR++A++RR  
Sbjct: 66  DILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++    +  + +++ V +QG  I LT +EY ++EL  + K   L++      LY+
Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLYN 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR+KL     GK +I TV G GY L +N +
Sbjct: 186 WDDEVSSNALEVHIHNLRQKL-----GKQFIRTVHGVGYALGKNEE 226


>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 235

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G EV
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDS 122

Query: 123 ------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + L+  G + ++++  TV V G  + +  KE+ ++E L       LT
Sbjct: 123 GAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVLT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   ++ ++      + K +DV + +LR K+        ++ TV G GY   
Sbjct: 183 RGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 243

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+  +++  L  E +   V   G D +   + Y  D I+LD+ +  + G  
Sbjct: 10  RVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++   DL ++L+ + V     R+ LT  E+ ++E+        LT+E 
Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR    D
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRSGGGD 242


>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 246

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+    + D ++LD+ +  + G+ 
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDGYG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 68  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A        +I  GD+ ++ + + V  +  RI LTG E+ ++ELL  R     ++   L
Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235


>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 257

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 7/242 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V   + G  G  L      D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILSYGPLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR K+        YI+TV+G GY L   +   +    E
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLELPSNGSSTNNEE 242

Query: 235 TA 236
           TA
Sbjct: 243 TA 244


>gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 235

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  +   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  AMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
 gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
 gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
           C3-41]
          Length = 240

 Score =  276 bits (707), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  IE     E+  I+LD+ + +  G EV
Sbjct: 9   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS+  
Sbjct: 69  CAEIRE-RAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +         +V   L ++ DA  V  +G  ++LT KEY+++  L+   +    +E  
Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 188 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 236


>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
 gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
          Length = 244

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 110/232 (47%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++DD  +   +   L  E F V + +  +    +      D I+LDL L    G  
Sbjct: 11  RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 71  ICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRRPA 130

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +      ++  G    +L  + +   G +I LT  E+ M++ L       L+++ 
Sbjct: 131 PEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLSRDK 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV I +LRK L        YI+TVWG GYV   + 
Sbjct: 191 LAQLARGREFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVFVPDG 242


>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 224

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L   ++  L  E++       G D ++     ++D IILD+ L  + G 
Sbjct: 1   MRLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R     TPV  L+    IED+V+GL  GADDY+ KPF+ EEL+AR+R ++RR  
Sbjct: 61  ELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++ ++K V     +I L+ KE+ ++E +   +N  L++E    H ++
Sbjct: 121 ALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    ++DV+I  LRKK+    G K  I TV G GYVLR+ 
Sbjct: 181 YDFEGGSNVVDVYIRYLRKKIDEGFGCK-LIHTVRGVGYVLRKE 223


>gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 225

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   + V V + G  G+ L    E+D I+LD+ L  I G+
Sbjct: 1   MRILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVVKTLRAKR-TTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+  G RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +    K  I TV G GYVL 
Sbjct: 180 MNFDSDTNVVEVAIRRLRTKIDDDFPVK-LIHTVRGVGYVLE 220


>gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 236

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   LK   F V     GE+G       ++DA ++D+ L  + G 
Sbjct: 15  MRILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR   I  PV  LS  +S++D+V+GLQ+G DDY++KPF   EL ARI+A++RR+ 
Sbjct: 75  SLVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRRAS 134

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  GDL ++L  + V   G +I L  +E+ ++E L       +TK M L H++
Sbjct: 135 NATEPTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV + +LR K+      K  + T+ G GYVL+ 
Sbjct: 195 DYSFDPQTNVVDVLVFRLRNKIDKD---KKMLHTIRGVGYVLKP 235


>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
           ACN14a]
 gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
           regulation of Pi uptake (OmpR family) [Frankia alni
           ACN14a]
          Length = 226

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLRTRS-SVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A++ +  G + ++++   V V G  + L  KE++++E+        LT+   ++ +
Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGYKFEP 226


>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
 gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
          Length = 231

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +A  +EL LK+EN+ V+     ++ +E     E D  ILD+ L D  G  
Sbjct: 4   KVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDASGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N+      +    + LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 REIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGYKIEK 231


>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
 gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
           jeikeium K411]
          Length = 231

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+A+  S+   L    + V +   GE+ ++L      D  ILD+ +    G 
Sbjct: 1   MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V R LR      P+ +L+   S+E++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 61  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  +  +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LR+K          I TV G GY LRE A 
Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRRKTEAN-NETRLIHTVRGVGYALRETAP 231


>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
 gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
          Length = 243

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243


>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 243

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+ +  + D ++LD+ +  + G+ 
Sbjct: 8   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDGYG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 68  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +        +I  GDL ++ + + V  +  RI LTG E+ ++ELL  R     ++   L
Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 235


>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  +E+ L S+ + VY  +  E+G+ + +  +   ++LD+ +  + G ++
Sbjct: 7   ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIMMPGMDGLQM 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R    + P+ +LS  S+  DK+ GL +GADDY++KPFN  EL AR+++ +RR    
Sbjct: 67  CKKIRETN-NIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRRYTQL 125

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++ I    L++N D   V V G  I LT  E+ ++ LL+       + + 
Sbjct: 126 NPNSAVNEAVKNEIAIRGLTINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTDE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 186 IFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235


>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  +FD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
 gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
          Length = 238

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
 gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
          Length = 238

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +++ L+ E + V   + GE  IE     E+  I+LD+ + +  G EV
Sbjct: 7   VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  + +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++AI+RRS+  
Sbjct: 67  CAEIRE-RAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +         +V   L ++ DA  V  +G  ++LT KEY+++  L+   +    +E  
Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFE 234


>gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 231

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++EDD+ LA  ++  L  E F+V     G  G+ L +  + D II D+ +  + GFE
Sbjct: 3   KIAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREKPDIIISDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L   + + PV +L+  S   DKV GL+ GADDY+SKPF+  ELVAR++A++RR   
Sbjct: 63  LTRTL-RTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRRLEM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A +         +  G L ++ +   + V G  + L+ +E+ ++  L   +    +++ 
Sbjct: 122 TAGTEAGIPAGLTLRLGGLELDAERHRLTVGGQEVELSPREFDLLAYLMNNRGRVFSRQS 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ ++      + + +DV +  LR+K+       +++ TV G GY   E
Sbjct: 182 LVDRVWGYDYPGDERTVDVHVRWLRQKIETDPARPHHLVTVRGVGYKFEE 231


>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 233

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 321

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  ++  ++  L++  F+V     G   + + +    D ++LDL L  + G E
Sbjct: 57  RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR  +   PV +L+  +   D++ GL+ GADDY++KPF+  EL  R+++++RR+  
Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANE 175

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G L V+  A+T    G  + LT +E+ ++  L  R     T+   L H
Sbjct: 176 TVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEH 235

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   + V I +LR+K+ +       + TVWG GY 
Sbjct: 236 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYR 277


>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
 gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
 gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
          Length = 227

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + +ILDL L  + G EV
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 69  AKRIRKTS-NVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V     RI L+ KE++++ELL+       ++      ++ G 
Sbjct: 128 ITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWPG- 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 187 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 227


>gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15]
          Length = 233

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   + + +        + D G+ G+E  +    D +ILDL L  + G  V
Sbjct: 5   VLIIEDNPGIGELVRMQVSDLGMKPVLVDRGDTGLERFREGGVDLVILDLMLPGLDGLAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      PV +L+  S+  D+V GL+ GADDY++KPF+  EL ARI+A+ RR    
Sbjct: 65  CREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAARIKALFRRVDAL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G     I    L ++   + V V    + LT +E+ ++   +  +    ++   
Sbjct: 125 SQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVDLTAREFDLLWHFASHRGRVFSRAQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++    E     ++  I +LR K+        Y++TVWG GY  
Sbjct: 185 LDSVWGYNHEGYEHTVNTHINRLRNKIEADPADPRYVQTVWGVGYRF 231


>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
           resistens DSM 45100]
          Length = 231

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +DD+A+  S+   L    + V +   G + +E+      D  ILD+ +    G 
Sbjct: 1   MKILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR      P+ +L+   ++ ++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 61  EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   +   +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LRKK     G    I TV G GYVLRE A 
Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRKKTEQD-GESRLIHTVRGVGYVLRETAP 231


>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY++KPFN  EL+AR+++ +RR   
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V ++G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIRENR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D   V V+G    LT KE+ ++ELL   K   L+     
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 243

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    +NV     GE+ +E  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            + S I         +L ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 234

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+A+  S+   L    + V +   GE+ ++L      D  ILD+ +    G 
Sbjct: 4   MKILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V R LR      P+ +L+   S+E++V GL +GADDY+ KPF  EEL+AR R++ RR+ 
Sbjct: 64  DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G  +  +   DL++N + + V     +I LT  E+ ++ELL       L++   
Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LR+K          I TV G GY LRE A 
Sbjct: 184 LEEVWGYDFPTSGNALEVYIGYLRRKTEAN-NETRLIHTVRGVGYALRETAP 234


>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
           Mycobacterium Tuberculosis
          Length = 230

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 7   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 67  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
 gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
          Length = 290

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 57  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 117 ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 176

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 177 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 236

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 237 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 287


>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
 gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
          Length = 231

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ +   I+  L+ ENF V     GE+ + L K  EFD I+LDL L    G +
Sbjct: 4   RILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFSGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R   +  PV I+S   S  DK  GL  GADDYISKP +  EL AR+ A +RR   
Sbjct: 64  ILKKVREKSL-LPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A ++I   +LS++L   +V+V+     LT KE+ +++L    ++   TKE  
Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++         +I+V I +LR+K+        YI T+WG GY L E
Sbjct: 183 YQFIWQDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKLGE 231


>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A +++  L++E F V +   GEDG+ L +  ++D ++LD+ L  + G+
Sbjct: 1   MRVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR  +   P+ +LS      D   GL  GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  NVCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDLS++   + V      + LT +E+ ++E L  R +  ++K   L H++D
Sbjct: 121 NRRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V++  LR+K+ +    +  ++TV G GY L  + 
Sbjct: 181 -TFDTDPNVVEVYVGYLRRKI-DVPFSRTALQTVRGAGYRLAGDG 223


>gi|293603700|ref|ZP_06686119.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817874|gb|EFF76936.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 234

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 5   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 65  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 124

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 125 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   + +  +IDV I +LR K+ + A     I TV G GY L  +A D+  
Sbjct: 185 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDDAP 232


>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Nitrospira defluvii]
 gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
           [Candidatus Nitrospira defluvii]
          Length = 238

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   ++L L+ E F       G +G+   K    D IILDL L ++ G E
Sbjct: 10  KILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGLE 69

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V + +R+ + +   P+ +L+  +   D V GL+ GADDY++KPF+ + LVAR++A++RR 
Sbjct: 70  VCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRRL 129

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+    G L+V+L    V + G  + LT KE+ ++E L       LT+++ L+
Sbjct: 130 ERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLLS 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++        + +DV + +L++KL       + I ++   GY LRE+
Sbjct: 190 AVWGYDYYGTTRTVDVHVRRLKQKL---PLLDDAIISIKSLGYKLRES 234


>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 236

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ LKSE +       GE+ + + +    D +ILD+ +  + G + 
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNGIDT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +LS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 67  CLKIREER-EMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125

Query: 123 AQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               +              L++NL+   V +  + + LT  E+ ++ LL+  +    + E
Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++         + V I K+R+K+ +      +I+TVWG GY + +
Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
 gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
 gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
 gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 243

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +   L  E F V V + G+    +      D I+LDL +    G  
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV I +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241


>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Escherichia coli F11]
 gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
 gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
          Length = 239

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 228

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +     +  D I+LDL L  + G E
Sbjct: 5   RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 65  VCRTLRARS-TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + + +  G + ++++   V V G ++ L  KE++++E+        LT+   ++ +
Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 184 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFEP 228


>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ +A  + L L+ E + +     G   + L     +DA+ILDL L  + G E
Sbjct: 6   KILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPHVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q+      +I    L+++  A+ V ++G  + LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGYKF 231


>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 243

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +   L  E F V V + G+    +      D I+LDL +    G  
Sbjct: 10  KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV I +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241


>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 232

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
           [Ralstonia eutropha JMP134]
 gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia eutropha JMP134]
          Length = 224

 Score =  275 bits (706), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L   +F V V   G DG+     +E+D IILD+ L  + G+
Sbjct: 1   MKILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K  TPV  L+    +ED+VRGL+ G DDY++KPF   EL+AR+R ++RR  
Sbjct: 61  DVLRQLRERK-DTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++    V   G RI LT +E+ ++  L+ R    L++    + ++D
Sbjct: 120 VREADRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR K+ +       I +V G GYVL 
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKM-DDHFAPKLIHSVRGIGYVLE 220


>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 236

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D++ L  S++  L +E F V     G  G+++ +   +D I+LD+ L  + GF
Sbjct: 1   MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR  +  TP+ +L+      D+   L +GADD + KPF+   LVARIRA++RR+ 
Sbjct: 61  KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL+++  +  V      I LT +E+  +ELL   K   L K+  + H++D
Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +  I++V+I  LRKK+ +   G   I T+ G GY L E+ 
Sbjct: 181 YDFEGDSNIVEVYIGYLRKKI-DVPFGTKAITTIRGVGYRLEEDG 224


>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 229

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIED++AL  ++   L++E ++V V   GE+G        FD IILD+ L    GF+
Sbjct: 4   HILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R A ++TP+ +L+    + DKV GL+ GADDY++KPF   EL+ARI A++RRS  
Sbjct: 64  VCRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPM 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +   GDL V+L    V  +G  + L+ +E+Q++  L   +  T+++   L  +
Sbjct: 124 RPPEKEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +        + +D+ I  LR+K+        ++ TV G GY  
Sbjct: 184 WGYSASTYTRTVDMHIASLRQKIEPDPKQPQWVHTVPGLGYKF 226


>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
 gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu012]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G + +++      DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DL+++   + V     RI LT  E+ ++E+L       LT+   L  
Sbjct: 121 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 247

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ ++  +  + D ++LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 129

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I   ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 130 NGASGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 238


>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD +ILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          I V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 231

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
 gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
          Length = 233

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   +E  L  + F V+    G + +E  +  + + I+LDL L DI G 
Sbjct: 1   MKILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLMLPDISGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R      P+ +L+  S+  D + GLQ GADDYI KPF+ +ELVAR+  ++RRS 
Sbjct: 61  VICQKIRKTS-DVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRSD 119

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +        G+L +  + K V      + LT  E++++ LL+       ++E  L 
Sbjct: 120 SSVVTETKWSFDKGNLVIYPENKQVFKNQKEVILTPTEFELLTLLASYPKKIFSREQLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++     +   +IID  I  LR+K+ +      +I TV+G GY      KDE+
Sbjct: 180 NVKGLEFDVLDRIIDSHIKNLRQKIEDNTRQPYFILTVYGMGYRFG-GKKDES 231


>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 226

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D I+LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    + PV +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLRARS-TVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   + + +  G + ++++   V V G+++ L  KE++++E+        LT+   ++ +
Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+    G   ++ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFEP 226


>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 229

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+SE F       GE  +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VARSIRGESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGED 122

Query: 122 HAQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A  L+  G     +++++ A TV   G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 AAPELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225


>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
 gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
           coelicolor A3(2)]
 gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 225

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225


>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 226

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 128/221 (57%), Gaps = 3/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+K +   I+  L+ ++  V     G++ ++  +  E+D I+LD+ L  + GFEV 
Sbjct: 6   LVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMTGFEVC 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  +A
Sbjct: 66  QQIREFS-NVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASKNA 124

Query: 124 QSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            S   I  GDL +N + + V V    I++T +EY+++ELL+       ++E  L  ++  
Sbjct: 125 DSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIWGT 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V+ +DV I +LR+KL +      Y+ T WG GY  +
Sbjct: 185 EYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYFQ 225


>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 252

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R+L+++D++ +   I L L+ E F V   + GE GI        D IILD+ +   I G 
Sbjct: 18  RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDGL 77

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR    +   P+ +L+    + D++ GL++GADDY++KPF+ +EL+ RIRAI+RR
Sbjct: 78  EVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRR 137

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     +     +++   DL +N   + V   G  I LT  EY ++ L        
Sbjct: 138 QGRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPRQV 197

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L ++  L  ++      E  II+V++  LR+K+ ++      I+TV   GYVL+
Sbjct: 198 LDRQTILQRVWGYEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVLK 251


>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMGGND 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL ARIRA++RR   
Sbjct: 63  VCKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   A+ ++  G + +++D   V V    + L  KE+ ++E L   +   LT+   ++
Sbjct: 122 ADSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLID 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+ +     + + TV G GY L 
Sbjct: 182 RVWGADYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKLE 227


>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  +   +   L  E + V+V +  +    +     FD I+LDL L    G  
Sbjct: 8   KLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLPGEDGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR +K  TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 68  ICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQPS 127

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +       +V G  S++L  + +   G  I LT  E+ M++ L       L+++ 
Sbjct: 128 PELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLSRDR 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                     E   + +DV I +LRK +   A    YI+TVWG GYV   +
Sbjct: 188 LAELARGRDYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVFVPD 238


>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 226

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L+  ++  L+   + V     GE+   L     +D +ILDLGL  I G 
Sbjct: 1   MRILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA+VRR+ 
Sbjct: 61  SVLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ L+V G + ++  A    V G  + LT  EY+++  + L ++  +++   + HLYD
Sbjct: 121 GHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKK+     G   IETV G GY L+ 
Sbjct: 181 QDFDRDSNTIEVFMGRLRKKI-----GTERIETVRGLGYRLKP 218


>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + +EL +   FD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGYKI 228


>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
 gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
          Length = 240

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 7   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 67  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 127 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 187 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 232


>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 229

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+++LA  +  +L+ E F   + + G + +   +    D ++LDL L  + G E
Sbjct: 3   HVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  ICKTIRA-KSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGV 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         +  G + +++   TV V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 VADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      + K +DV + +LR K+        ++ TV G GY    
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGYKFEP 229


>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 227

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G+  +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
 gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
           [Thermotoga naphthophila RKU-10]
          Length = 225

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+E
Sbjct: 4   RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR   
Sbjct: 64  ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            DE    ++   I  LRKK+ +    +  I TV G GYV    A+DE
Sbjct: 184 DDEVFSDVLRSHIKNLRKKV-DKGFKRKIIHTVRGIGYV----ARDE 225


>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
 gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
          Length = 225

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L  E F V V   G++ + L      D I+LD  L  + G  V
Sbjct: 4   VLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDGLAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR A   TP+ +L+   ++ED+V GL SGADDY+ KPF   EL+ARIRA++RR    
Sbjct: 64  VQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEPA 123

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + +  +V  DL ++   +          L+ +E+ ++          LT+   L  ++  
Sbjct: 124 SDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWGH 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +    ++DV+I  LR+KL  A G    I TV G GYVLRE+
Sbjct: 184 DFDGYDSVLDVYIGYLRQKLE-AGGEPRLIHTVRGVGYVLRES 225


>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 248

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 16/240 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  +   +   L+ E F+V   + G   +++ +    D IILDL L D+ GF
Sbjct: 1   MKILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGF 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ R LR  K +   P+ + +  +   D V GL+ GADDY++KPF+ + LVAR++ I+RR
Sbjct: 61  DICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRR 120

Query: 119 SRGHAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           ++                 +    L +  +   V V G ++  +  E+ ++  L+     
Sbjct: 121 AQEAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGR 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG---KNYIETVWGRGYVLREN 224
             +++  +N +         + IDV I  +RKKLS AAG    +N IETV G GY + E+
Sbjct: 181 VFSRQQIINAIKGDSYPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRMTED 240


>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 232

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  LK ++++V     GE+ + L +  +FD I+LDL L  + G E
Sbjct: 4   RILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R      PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR   
Sbjct: 64  LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+     +I   DL ++L + +V+V+G  + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++        +I+V I +LR+K+     G  YI T+WG GY +
Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGYKM 230


>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A I+TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 69  VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 128

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GDL ++ DA  V   G +I L+  E++++  L +     ++K   L+H++
Sbjct: 129 GEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 189 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 231


>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
           519]
 gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++  L+     +  +  G D +E  K  ++D I+LDL L  I GFEV
Sbjct: 4   ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ ILS       K++GL+ GADDYI+KPFN  EL AR+ AI+RR    
Sbjct: 64  CKKVRETS-DVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEKS 122

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +    GD+++N   + V      I+LT KE+ ++ LL    N   ++E  L  ++ 
Sbjct: 123 KKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVWK 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +DV I KLR+K+ + +    +I T WG GY  +
Sbjct: 183 YEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYFQ 224


>gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 222

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+ ALA  ++  L++  F V     GE+G  L     +DA +LDLGL  + G 
Sbjct: 1   MRILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +K++G  +GADDY++KPF  +E+V R+RA++RR+ 
Sbjct: 61  SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+Q  +  G + ++ +   V + G  + LT +E++++  L       +++   + H+YD
Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V I +LRKK+     G   I+TV G+GYVL
Sbjct: 181 RNFDSDSNVLEVMIGRLRKKI-----GAEMIQTVRGQGYVL 216


>gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I+  L  +N+ V   + G+  + L + +  D +ILD+ L D+ GF 
Sbjct: 5   KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDINLPDVIGFN 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK+RG   GADDY++KPF   EL  R+ AI+RR R 
Sbjct: 65  LCQEM-QSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +    L ++   + V +    + LT  E+ ++  L+        +   +  +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + +++DV I ++RKK+   A     I+TV G GY   
Sbjct: 184 WDYEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227


>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D + V V+G    LT KE+ ++ELL   K   L+     
Sbjct: 123 YNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228


>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 224

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++         +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221


>gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 227

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +A  +   L  E F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +L++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R  +RR S
Sbjct: 61  RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                      +L ++   +     G RI+LT KE+ ++ELL+  +   L++ +  + ++
Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ +       I TV G GY L    +D
Sbjct: 181 DINFDSDTNVIDVAIRRLRAKMDDDF-EPKLIHTVRGMGYRLDLPDED 227


>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 226

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIED+  LA   +  L+   F V +   G+ G+ L + ++ D ++LDL L  + G +V
Sbjct: 4   VLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMDGLDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KP++  ELVAR+RA++RR    
Sbjct: 64  AREIRRQS-DVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +    ++  G+L V+LD  TV+     I LT  E+Q++  L  +     T+   L  +  
Sbjct: 123 SGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E   + ID  I  LR K+       +Y+ETV+G GY  R+
Sbjct: 183 VAYEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRFRK 225


>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 225

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 137/228 (60%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K+L   I   L+ E++ V     G+D ++     E+DAIILD+ L ++ G+
Sbjct: 1   MRILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV  L+   SIED+V+GL SGA+DY++KPF  EEL+ARIR ++R+  
Sbjct: 61  EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++    +L+V+ ++ +V      I L+ +E+ ++E +   +   L+K+    H+++
Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRDDIPIKLSKREFTILEYMIRNRGKILSKDKIEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E    +I+V+I  LRKK+         I  ++G GY+L+   +DE
Sbjct: 181 YDYEGGSNVIEVYIRYLRKKIDADFS-PKLIHNIYGVGYILK--VEDE 225


>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 226

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 135/224 (60%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+     I      E + V     G +G+       FDA++LD  L  + G  
Sbjct: 4   RLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + 
Sbjct: 64  VIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +   DL ++L  + V   G  I LT +E+Q++E    RKN  +++ M L  ++D
Sbjct: 124 SEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   ++DV I KLRK+L + AGG   IETV G GY++ ++
Sbjct: 184 YHFDPNTNVVDVHISKLRKQL-DEAGGPPLIETVRGAGYMVSDD 226


>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  LA  +EL LK E F+V+V   G +G+EL    ++D I+LD+ L  + G E
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A +  +   DL V++ A+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E  ++DV++  LR+KL        YI+TV G GYV+R 
Sbjct: 183 FDAEVETNVVDVYVRYLRQKLDEHDKE-RYIQTVRGTGYVMRP 224


>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
 gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
          Length = 248

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   ++  L+ E F V     GE+ +          ++LD  L  + G EV
Sbjct: 23  VLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEV 82

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R LR        P+ +L+      D+VRGL SGADDYI+KPF+  ELVAR+RA++RR S
Sbjct: 83  CRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRAS 142

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    ++   D++++L A  V      +HL   E++++           ++E  L+ ++
Sbjct: 143 PGMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDLVW 202

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK ++      + I TV   GY L
Sbjct: 203 GHDVYVEPRTVDVHIRRLRKAMNEE-DELDLIRTVRSAGYAL 243


>gi|240146170|ref|ZP_04744771.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
 gi|257201702|gb|EEU99986.1| transcriptional activator protein Irlr [Roseburia intestinalis
           L1-82]
          Length = 224

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L ED++ L   I   L  + ++V     G   I++    E+DA+ILD+ +    GF
Sbjct: 1   MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR    +TPV  L+   ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S 
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DLS++  +  V   G  I L+ KEY M+E     +   L++EM  +H+++
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    ++DV+I  LRKK+ +    K  I TV GRG+++RE 
Sbjct: 181 FDYEGGTNVVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMREE 223


>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
 gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 257

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L+ + F+V                 +D I+LDL L    G  
Sbjct: 8   RILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLMLPGEDGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A+   PV +L+      D++ GL+ GADDY++KPFN  ELVARI+A++RR   
Sbjct: 68  ICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQPH 127

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G + VNL  + +   G  I LT  E+ ++++L       L+++  
Sbjct: 128 TLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDKL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +            + IDV + +LRK + +      YI+TVWG GYV   + +
Sbjct: 188 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPDEQ 239


>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 223

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD+ +   IE+ LK+E + V     G + +      + D IILD+ + ++ G    
Sbjct: 1   MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             +R +    P+ ++S      DK+ GL +GADDY+SKPFN  EL AR++A++RR+    
Sbjct: 61  TQVRKSS-QVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQ 119

Query: 124 QSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G L+++     V  +G+ I LT  E++++ LL+  +    + E     ++
Sbjct: 120 PEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   E   K + V I  LR+KL  A  G+  I TVWG GY + 
Sbjct: 180 NEPGEGSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGYKIE 222


>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 239

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + +T
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPEQRDT 239


>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
 gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
           Nb-311A]
          Length = 223

 Score =  275 bits (706), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ I +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I+TV G GY+L   A
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPA 220


>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 240

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDIAGLSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  R E     ++  I +LR K+         I TVWGRGY L
Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231


>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 231

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L+ E F V   + GE  + L K      +ILDL L  I G E
Sbjct: 6   KILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPRISGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+  S  EDK+ GL  GADDY++KPF+  ELV R++A++RR+  
Sbjct: 66  ICNKIRAVS-DVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +  L        GDL V +    V+  G  ++LT  E++++  L        ++E  + 
Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + ID +I  +R+K+ +      YI TV+G GY  
Sbjct: 185 KAFGEDYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGYKF 229


>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
 gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
          Length = 242

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ I    L ++  ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator
           [Acidiphilium cryptum JF-5]
 gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidiphilium cryptum JF-5]
          Length = 225

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L+   F   V   GE G+E  +   +DAIILD+ L    GF
Sbjct: 1   MRVLIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRRNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R     T V +L+    + D+V GL++GADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  EILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L        G  + LT KE++++ LL+ R    +++ +    ++D
Sbjct: 121 ARQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV + +LR KL +    +  I TV G GYVL +
Sbjct: 181 INFDSGTNVVDVHMYRLRAKL-DDPFSRRLIHTVRGVGYVLED 222


>gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I+  L  +N+ V   + G+  + L + +  D +ILD+ L D+ GF 
Sbjct: 5   KILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDVNLPDVIGFN 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK+RG   GADDY++KPF   EL  R+ AI+RR R 
Sbjct: 65  LCQEM-QSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +    L ++   + V +    + LT  E+ ++  L+        +   +  +
Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + +++DV I ++RKK+   A     I+TV G GY   
Sbjct: 184 WDYEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227


>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED + L+  +  +L+ E F+V +   G  G+     +E   ++LDL L  + G EV
Sbjct: 4   VLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR +  + P+ +++   +  DK+ GL+ GADDY++KP++  EL+ARIRA++RR RG 
Sbjct: 64  CKKLRQSS-TVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        ++  G++ ++++  +V V G  I +  KE+ ++E L   +   LT+   ++
Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+ +     +++ TV G GY   
Sbjct: 183 RVWGLDYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGYKFE 228


>gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 232

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK++A   +  L+   F   +   G  G+E     E+D I+LD+ L    GFE
Sbjct: 3   KILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ +++        +RGL  GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  ICQEIRKVK-EIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                   G +Q++I  G LS+N D++ V +    I L  KE++++  L+   N   +K+
Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+ ++      +   + V I ++R+K+        YIETVWG GY  
Sbjct: 182 TLLDRIWGEESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGYRF 230


>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 235

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   +   L+++ +NV +TD G++G+E C+    D ++LDL L DI G +V
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDIDGIDV 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + ++  +   + P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+ARI+ ++RRS+
Sbjct: 65  CKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    I  GD++++ +   V      + LT KE+++++LLS  +   LT++  L+ +
Sbjct: 125 NETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + +DV I  LRKK+ +      YIETV G GY L++
Sbjct: 185 WGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229


>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
 gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
           C3-41]
          Length = 232

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD+A+   +   L  E F+V   + GE+ ++ C    FD +ILD+ +  + G E
Sbjct: 6   HILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    + P+ I+S   S  DK  GL  GADDYI+KPF+  E  AR++A++RR+  
Sbjct: 66  VLKVIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H Q ++V G L +++   ++   G  + LT KE+ +++L    +N   TKE   
Sbjct: 125 YAGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +  II+V I +LR+K+ +      YI+T+WG GY   
Sbjct: 185 QLIWKDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 231


>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 232

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  LK ++++V     GE+ + L +  +FD I+LDL L  + G E
Sbjct: 4   RILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ +R      PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR   
Sbjct: 64  LLKHIRETS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+     +I   DL ++L + +V+V+G  + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++        +I+V I +LR+K+        YI T+WG GY +
Sbjct: 183 IYQLIWEEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGYKM 230


>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
 gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
           Broad-1]
          Length = 244

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  I + L+ E + V     G   +   + +  DAI+LD  L D  G E
Sbjct: 20  RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+RA++RR   
Sbjct: 80  VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGA 139

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R    S+I  GDL+++ D++ V   G  I LT  E++++  L       L+K   L+ +
Sbjct: 140 TRIEEHSVIHVGDLTMDEDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRV 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++++I  LRKK+   AG +  I T+ G GYVL+
Sbjct: 200 WSYDFGGQANVVELYISYLRKKI--DAGREPMIHTMRGAGYVLK 241


>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIREDR-NIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D + V ++G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++         + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWEEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  +FD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 230

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  F   + + G+D ++      FD +ILDLGL D  GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR    + P+ IL+    + DKV GL++GADDY++KPF   EL+AR+RA +R   G
Sbjct: 63  ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQTG 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   + T ++ +NL  + V+V    + L+ KE+ ++E         L++E  L+ +
Sbjct: 123 KPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL +       IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGSD-----RIETVRGMGYRL 220


>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
 gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++   +++ LK  NF+V   + GE+G+E  + ++ + +ILD+ L  + G E
Sbjct: 3   KILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR    +  + +L+  S   DKV GL+ GADDYI KPFN  EL  RI+AI+RR   
Sbjct: 63  VCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVNA 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + +  ++I  G   ++L +K +      I +T  EY ++++          ++  L+ +
Sbjct: 123 VKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        +I TVWG GY  +
Sbjct: 183 WGYDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGYRWQ 226


>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 227

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   I+  ++S  ++      G + +   + +  D I+LDL L  + GFEV
Sbjct: 6   ILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGMDGFEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+      D++ GL+ GADDY+ KPF+  E++ R+RA++RR++
Sbjct: 66  CKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRRNK 125

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G            LSV+++A   E+    + LT  E++++  L       LT+E  LN +
Sbjct: 126 GEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLNTV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL + A    ++ETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGDYA---KFVETVRGVGYRFKE 227


>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 233

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +A  +++ L++E ++  +   GE+ + + +   FD I+LD+ +  + G E+
Sbjct: 5   ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  K   + P+ ++S  +   DK+ GL +GADDY++KPFN  EL AR+++++RRS 
Sbjct: 65  CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124

Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +++         +  G L ++     VE  G  +HLT  E+ ++ LL+ +     + E 
Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++  +       + V I KLR KL    G K  I TVWG GY +
Sbjct: 185 IFQHVWREKYFESNNTVMVHISKLRDKLEQETGDK-LIATVWGVGYKI 231


>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 224

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD  ++  + ++L+SE ++V V   G + + L +    D ++LD+ L  + G 
Sbjct: 1   MRILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      P+ ++S  +   D + GL++GADDY++KPF    L+AR++  +RR  
Sbjct: 61  SVCRLLREES-DVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++   DLS++L A  V+     +HLT  E+ ++ +L+ +     ++E  L  ++ 
Sbjct: 120 NESE-ILKVADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V I +LR K+         + TV G GY 
Sbjct: 179 YRHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGYR 218


>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 224

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L S  + V V++ G DG+ + +  EFD +ILD+ L  I G+
Sbjct: 1   MRILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             +R  R      PV  L+   S+ED+V+GL+ GADDY+ KPF+  EL+AR+R ++RR+ 
Sbjct: 61  SFIRRFRERS-QVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q +    DL V++  +     G RI LT KE+ +++LL   K   +++    + ++D
Sbjct: 120 MRQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR K+ +       I+TV G GY + 
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKI-DDGFAVKLIQTVRGMGYRIE 220


>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
          Length = 251

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 126/234 (53%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F+V     G + + L +    D ++LD+ L D+ GF V
Sbjct: 13  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFTV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   ++ PV  L+      DK+ GL  G DDY++KPF+ EE+VARIRA++RR+R  
Sbjct: 73  TRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRSL 132

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I+ GDL ++ D   V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 133 EDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLS-----NAAGGK------NYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+      +AAG          I+T  G GY+LR
Sbjct: 193 EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYMLR 246


>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
 gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + +ILDL L  + G EV
Sbjct: 6   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ IL+    IEDKV GL +GADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 66  AKRIRKTS-NVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVSPA 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++ G 
Sbjct: 125 ITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVWPG- 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL  AAG +  I TV G GYVLRE+
Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AAGERRLIHTVRGVGYVLRED 224


>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 243

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF+
Sbjct: 4   RMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  G
Sbjct: 64  ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           HA          ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++
Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N 
Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLELDP-ESVHIDSIRGVGYKLVVNP 235


>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
           protein [Plesiocystis pacifica SIR-1]
          Length = 256

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           IL++ED++ L  ++E  L+ E +       G  G+E        D ++LDL L DI G E
Sbjct: 5   ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDISGTE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R LR A+ +   PV +L+      D+V G + GADDY++KPF+  EL+ R+RAI+RR 
Sbjct: 65  VCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILRRA 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++  A S +  GDL V++    V V G+ I LT  E++++  L  R     T++  L+ 
Sbjct: 125 GTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLLSD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        + +D  + +LRKKL +A     YIET+ G GY  R++
Sbjct: 185 VWGMHAGLTTRTVDTHVTRLRKKLGDAGS---YIETLRGVGYRFRDS 228


>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 239

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 127/236 (53%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +L   +   LK   F+V     G+  +++    + D ++LD+ L +  G +
Sbjct: 3   KVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEESGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K   P+ +L+ +    DKV GL+ GADDY++KPF+  E++AR+ A++RR   
Sbjct: 63  VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+            G L+++ D   V+  G  + LT KEY+++  ++ R+   L++E 
Sbjct: 123 KTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLSRET 182

Query: 174 FLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ ++      P+ +++D+ +  LR K+        Y++TV G GY   + + DE
Sbjct: 183 ILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGYRF-DRSHDE 237


>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
          Length = 229

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 10/228 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +LL+ED+  L  ++   L SE ++V     G++ ++L +    D I+LDL L D+ 
Sbjct: 1   MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMS 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R LR +K +  TP+ +++      D++ G + GADDYI KPF+  E + R+ A++
Sbjct: 61  GLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAML 120

Query: 117 RRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +RS     + +  I+ G L +++ A  V+++   + LT KE+ ++  L  R     T++ 
Sbjct: 121 KRSGDKINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDA 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++    E   + +D  + +LR KLS+       IETV G GY  
Sbjct: 181 LLDDVWGYNCEVTTRTVDTHVKRLRAKLSDVGNN---IETVRGVGYRF 225


>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
 gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
           29799]
          Length = 229

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+  +A  +E+ LKSE F V+    G D ++       D  ILD+ L DI 
Sbjct: 1   MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF +   +R      PV +L+  +   DK+ GL  GADDY++KPFN  ELVAR++A +RR
Sbjct: 61  GFTLCGEIRREH-HFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRR 119

Query: 119 SRGHAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              + ++    GD      L +N       +    ++LT  E+ ++ +L   +   ++ E
Sbjct: 120 YTHYNENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  +       + V I +LR+K+        +I+TVWG GY +
Sbjct: 180 KLFESVWGEKYLDRNNTVMVHIRRLREKMGEPGRNPRFIKTVWGVGYKI 228


>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 229

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L++ED+ ALA  ++  L+ E ++V V   GED +   +    D +++D  L  + 
Sbjct: 1   MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60

Query: 59  GFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV R LR      + P+ +L+      D+VRGL +GADDY+ KPF+  EL ARIRA++
Sbjct: 61  GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120

Query: 117 RRSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR R G A+ +I  GD++++  A  V+     IHL   E+++++ L        ++E  L
Sbjct: 121 RRIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV + +LRK L N    ++ I TV   GY    NA
Sbjct: 181 DAVWGSDVYVEARTVDVHVGRLRKAL-NNKEERDPIRTVRSAGYAFDVNA 229


>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 133/225 (59%), Gaps = 2/225 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  +++ L+ E ++V +   G  G+       +D IILDL L  + GF V
Sbjct: 5   ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLPGLDGFSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  K STPV ILS    ++DKV GL  GADDY++KPF+ EEL+ARIR ++R++   
Sbjct: 65  LRELR-KKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAKS 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +V   ++++L    V+  G +I LT KE+++++ L +     LT+E  L +++   
Sbjct: 124 NANKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWGYN 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E  I+DV+I  LR K+      K  I+T+ G GY LR+   +
Sbjct: 184 YIGETNIVDVYIRYLRSKIDEPFDNK-LIQTIRGVGYSLRKEKNE 227


>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 224

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 130/223 (58%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++         +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221


>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
 gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 225

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 116/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
          Length = 231

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     + D  ILD+ L    G  
Sbjct: 4   KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+  L+   +  DK+ GL  GADDYI+KPF   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L  E ++V     G +G+++    + D ++LD+ +  + GFE
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR    + PV +L+    +E++V+GL +GADDY+ KPF  EEL+AR+RA++RR  G
Sbjct: 64  ALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +   DL ++ DA+ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 124 DDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E  +++V+I  LR+K     GGK  I+T+ G GY+LR +
Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEEH-GGKRLIQTIRGAGYILRGD 227


>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 232

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 6   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 66  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 125 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 185 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 230


>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
 gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
           WAL-14163]
 gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
          Length = 235

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + +++R  + + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A  +     L++N+      + G  + LT  E+ ++ +L  RK + ++ E 
Sbjct: 124 YNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAEE 183

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++           I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L + ++  L  E+++V     G + +       +D IILD+ L    G+
Sbjct: 1   MRLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMAYIDMTSYDGIILDIMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  +  TPV +L+   SIED+VRGL  GADDY+ KPF  EEL+ARIR ++RR  
Sbjct: 61  EILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ D + V   G+ I L+ KE+ ++E L   KN  +T++    + +D
Sbjct: 121 QFTSNQLKIADLILDRDTRKVTRAGNEIDLSAKEFMVLECLMRNKNIVMTRQQIEQNAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV+I  LRKK+ +A   +  I TV G GYV+REN
Sbjct: 181 FDFEGGSNVIDVYIRYLRKKI-DAQYEQKLIHTVRGVGYVMREN 223


>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
 gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
           17241]
          Length = 234

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL++ED+  +     + LK   + V     GE+ I++ +     FD  +LD+ +  + G
Sbjct: 3   RILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FEV R +R    S  + +L+  S   DKV GL  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  FEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 ++  A S + +G   +N+ ++TV   G  + LT  EYQ++E      NT L ++
Sbjct: 123 TVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQ 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             LN ++      ++KI+DV I +LR KL +A     ++ TVWG GY   +
Sbjct: 183 DILNKVWGEGYFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGYKWVQ 233


>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 246

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L+ E + V     G   +   + +  DAI+LD+ L D+ GF
Sbjct: 20  IRVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR  
Sbjct: 80  EVLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRAG 139

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S +V GDL ++ DA  V      I LT  E++++  L       L+K   L+ 
Sbjct: 140 MAAAQRSSELVVGDLVLDEDAHEVRRADRPIELTATEFELLRYLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++     +  ++++++  LRKK+   AG    I TV G GYVLR  A+
Sbjct: 200 VWNYDFGGQSNVVELYVSYLRKKI--DAGYAPMIHTVRGAGYVLRPAAE 246


>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
 gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
          Length = 242

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
 gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
           Tu4000]
          Length = 225

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 233

 Score =  275 bits (705), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 67  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231


>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
 gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium marinum M]
          Length = 240

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR   
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 239


>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  + +      D ++LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFPGGNGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADD+++KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I    L ++  +  V V    + +   E++++      +    ++E  L+++
Sbjct: 124 APTCLEEIIDVQGLQLDPVSHRVTVNDQVLDMGPTEFRLLHFFMTHQERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAV-TPSGHDRLIQTVRGAGYRF 225


>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 230

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+I+D   +   I   L+   + V     G +G+ + +    D ++LD+ +  + 
Sbjct: 1   MRQTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF  L+A R      PV +L+      DKV GL+ GADDY++KPF+ +ELVARIRA++RR
Sbjct: 61  GFGFLQAYRREH-QAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRR 119

Query: 119 S----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    + + +  +  G+L +N   + V V    I+LT  E+ ++ LL        T+E  
Sbjct: 120 TAAARQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L HL     E   + IDV I  LR+K+        YIETV+G GY  R 
Sbjct: 180 LEHLQGNSYEGVERTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYRCRP 228


>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
 gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
          Length = 243

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G RI+LT  EY +  L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243


>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 135/223 (60%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  LA  +EL LK E F+V+V   G +G+EL    ++D I+LD+ L  + G E
Sbjct: 4   RILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A +  +   DL V++ A+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E  ++DV++  LR+KL        YI+TV G GYV+R 
Sbjct: 183 FDAEVETNVVDVYVRYLRQKLDEHDKE-RYIQTVRGTGYVMRP 224


>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
           F2-515]
          Length = 220

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 119/217 (54%), Gaps = 9/217 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  ++  L  E F+VY    G++ +EL +  + D I+LD+ L    G E
Sbjct: 5   KILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +++   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCREVR-KKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            + S         +  G L ++ DA     +G  I LT +E++++  L+      +T+E 
Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY 210
            L  ++      +V+ +DV + +LR+K+ +      +
Sbjct: 184 LLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPAW 220


>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
 gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
          Length = 227

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A      L+   F+  +   GE+G+ L K  E+  I+LDL L  I GF+
Sbjct: 3   RILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R   +  P+ +++      DK+RG   GADDYI KPFN  ELVAR++A   R   
Sbjct: 63  LCREMREF-LDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             SR   +  +    L ++ D++ V   G     T KE+ ++  L+   +   +KE    
Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RIWGYDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRFK 227


>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   +   G + +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKQLRQRS-AVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    ++  G + ++++   V V G  + L  KE+ ++E L       LT+   ++ +
Sbjct: 122 SEELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY   
Sbjct: 182 WGADYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGYKFE 225


>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  275 bits (705), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 133/225 (59%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L  E ++V     G +G+++    + D ++LD+ +  + GFE
Sbjct: 4   RILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR    +TPV +L+    +E++V+GL +GADDY+ KPF  EEL+AR+RA++RR  G
Sbjct: 64  ALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTG 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              S   +   DL ++ DA+ V   G R+ LT KE++++ L        L++++ ++ ++
Sbjct: 124 DDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E  +++V+I  LR+K     GGK  I+T+ G GY+LR +
Sbjct: 184 GYDYSGESNVLEVYIAMLRQKTEEH-GGKRLIQTIRGAGYILRGD 227


>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
 gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 134/223 (60%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L   I+ +L  E + V V+  G  G+E      +D IILD+ L +I G+ 
Sbjct: 3   KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  KI TPV ++S    I+D+++GL SGADDY+SKPF+  EL+AR++AI+RR+  
Sbjct: 63  ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I   +L ++L+ + V +    + LT KEY +IE L   +N  ++K   + +++  
Sbjct: 123 QYEQIISIYNLKIDLNTRKVYINDSEVQLTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGD 182

Query: 182 RDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +P      +DV I  +RKK+ +       I+TV G GY+L+
Sbjct: 183 EFDPFSMSNFLDVHIKNIRKKIGD--KEYKIIQTVRGIGYLLK 223


>gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 225

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 134/226 (59%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    E+DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGKQLKNTLEQNGYAVDLSVDGEDGHFLGSTEEYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNSSSELTAGDVRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLDDPAE 221


>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
 gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
          Length = 258

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A  I + L+  N ++   D G+  ++L     +D I+LDL L  + G +
Sbjct: 23  RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR     TP+ +L+  SS  D+V GL+ GADDY+SKPF+  EL AR +A++RR+R 
Sbjct: 83  ICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTRM 142

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        A   +  G   +      V + G RI LT +E+ ++   + +     
Sbjct: 143 NRHQENAELEQNGAAEPLKLGPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRVF 202

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   L+ ++    +     ++  I +LR K+    G   Y+ TVWG GY  +
Sbjct: 203 RRSELLDEVWGYGHDGYEHTVNTHINRLRGKIETDPGNPQYVNTVWGVGYRFQ 255


>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 225

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++++LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +   I   DL ++L  +     G +I LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +       I+TV G GYVL   
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKI-DDHFEPKLIQTVRGMGYVLEAP 224


>gi|87124761|ref|ZP_01080609.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86167640|gb|EAQ68899.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 249

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           R+LL+EDD+++  ++   LK+E F+V     G + +           D ++LDL L  + 
Sbjct: 21  RLLLVEDDESIRETVREALKAEGFDVLACGDGAEALAALTDAAAEPVDLVVLDLMLPGLG 80

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R LR    STP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 81  GLDLCRQLRKNDNSTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 140

Query: 119 SRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S+  + S          +L +  +   V      + L+ KEY+++EL         +++ 
Sbjct: 141 SQQPSSSEAPPQVYRHENLCLFAEECRVSRDDKDLSLSPKEYKILELFIKNPRRVWSRDQ 200

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  ++      + K +DV I  LR+K+ +      +I TV G GY  
Sbjct: 201 LLERIWGIDFVGDTKTVDVHIRWLREKIEDEPSAPKHIRTVRGFGYRF 248


>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 67  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231


>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 227

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +   L+S  F       G +G+   +     A+ILDL L  + GFEV
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGLDGFEV 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+      D++ GL+ GADDY+ KPF+  ELV R+R++++R  
Sbjct: 66  CKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKRHA 125

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++    LSV++ A  V + G  + LT  E++++  L       LT++  LN +
Sbjct: 126 PEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLNSV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL + A   + IETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLGHFA---DMIETVRGVGYRFKE 227


>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  ++ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  LK+  F + V + G D ++     +FD +ILDL L    GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR      P+ IL+    IEDKV GL+ GADDY++KPF   EL+AR+RA +R    
Sbjct: 63  ILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + ++  GD+ ++L  +  +V    I L+ KE+Q++E L       +++E  L+ +
Sbjct: 123 SPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL     G N IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKL-----GGNRIETVRGMGYRL 220


>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 230

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+ QG  +HL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L+    G + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKALNGDVDG-DPIRTVRSAGYSLDLDA 229


>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++++A   +  L+   F V + + GE G+      +FD +ILDL L  + GFE
Sbjct: 3   RILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICRKVREVK-NTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +     ++L +  EFD IILD+ + ++ G E
Sbjct: 9   KILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMDGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 69  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H +S++  GDL+VN D + V V+G    LT KE+ ++ELL+  K   L+     
Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 188 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233


>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
 gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
          Length = 232

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E+ LK++N+ V+    G + +E  +  E D  ILD+ L DI GF 
Sbjct: 4   KILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVMLPDIDGFR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL  GADDYI+KPFN  E++AR++  +RR + 
Sbjct: 64  ICQKIRENYY-FPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRRYQK 122

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +          +S      L +N D     + G  I LT  E+ ++  L   +   ++ E
Sbjct: 123 YNNPTKKQFFPKSEYDIRGLIINKDTHKCFLFGKEISLTPIEFSILWYLCEHQGKVVSTE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               +++  +       +   I +LR+KL+  A    +I+TVWG GY
Sbjct: 183 ELFENIWKEKYLDNNNTVMAHIGRLREKLNEPAKNPKFIKTVWGVGY 229


>gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator
           protein [Alteromonas sp. SN2]
          Length = 227

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K +   I+  L    F + +   G DG       EF+ IILD+ L DI G+
Sbjct: 1   MKILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVMLPDINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR +   TPV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L+   DL +++ ++ V+  G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +IDV I +LR K+ + A     I+TV G GY L  + +
Sbjct: 181 INFDSDTNVIDVAIRRLRAKI-DDAFSPKLIQTVRGMGYKLTTDEE 225


>gi|311104327|ref|YP_003977180.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
 gi|310759016|gb|ADP14465.1| transcriptional activator protein IrlR 2 [Achromobacter
           xylosoxidans A8]
          Length = 230

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   + +  +IDV I +LR K+ + A     I TV G GY L  +A D+  
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDDAP 228


>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 232

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+V +   G   +E       D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR +  
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQDA 122

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +            +  G + ++++  TV V G  + +  KE+ ++E L       LT+  
Sbjct: 123 SSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ ++      + K +DV + +LR K+         + TV G GY   
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGYKFE 231


>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
 gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L      V      E    L K    D ++LD  L    G E 
Sbjct: 5   ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQSGIEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+  S  +DK+ GL++GADDYI+KPF+  EL ARI+A++RR  
Sbjct: 65  ARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L ++     V   G  + L   E++++           ++   L+ ++
Sbjct: 125 PQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L   +G    ++TV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRSALEP-SGHDALVQTVRGTGYRF 225


>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
          Length = 241

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  + + P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKSA 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+ ++      +NL  + +   G  + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ L        YI+TVWG GYV   +  D
Sbjct: 187 MNLARGRDYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVFVPDGSD 239


>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++A+  S+   L+   ++V +   G + +E  +    + +ILD+ + ++ G 
Sbjct: 1   MKILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR       + +L+    + D+V GL +GADDY+ KPF  EEL+AR+R++VRR+ 
Sbjct: 61  EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +       +++ +   DL +N D + V+     I LT  E+ +++LL       L++  
Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++          ++V+I  LRKK +   G    I TV G GYVLREN
Sbjct: 181 ILEEVWGYDFPSSGNALEVYIGYLRKK-TEGGGESRLIHTVRGVGYVLREN 230


>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS223]
 gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
           [Shewanella baltica OS678]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F     +  +  I L K    D I+LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLMLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225


>gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 135/231 (58%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTD-IP 58
           M+IL++ED+ ++   + L LK E ++V     GE+ IEL  K  + +  +LD+ L   I 
Sbjct: 1   MKILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+VL+ +R    +  + +L+  ++ EDKV GL+ GADDYI+KPF+ +EL+ARIRA++RR
Sbjct: 61  GFDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRR 120

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        + +G+ ++N   +        I LT KE++++EL    K  +L+++ 
Sbjct: 121 VTSIDMVKEEVEKVHSGEFTLNFSERKFFKGEEEIELTPKEFEILELFMKNKGKSLSRDE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+ ++      ++K++DV I ++R K+   +   +Y++TVWG GY   E+
Sbjct: 181 ILDRIWGKNYYGDLKVVDVNIRRIRMKIEKDSSNPSYLKTVWGYGYRWEED 231


>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 236

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R++++EDD+A+A+ ++  L+ E + V     G++G+E  K YEF  +++D+ L ++ GF 
Sbjct: 4   RLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV I+S   +  DKV+GL+ GADDYI+KPF+  E+ ARI A +RR + 
Sbjct: 64  LCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYKK 123

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +   V G       L +  + K V V    I +T KE++++ L++   N   +KE   
Sbjct: 124 VDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEELY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +H+++  D      + V I +LR+K+ +++    +I+TVWG GY  
Sbjct: 184 HHIWESMDVEGNNTVTVHIKELREKIGDSSKNPTFIKTVWGVGYKF 229


>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 228

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +D+ A+A  I+  LK E +       GE+ +E+ K  E+D +ILD+ +  + GFE
Sbjct: 3   RVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+      D+V GL+ GADDY+ KPF+  EL+AR++A +RR   
Sbjct: 63  TLRELRKFSY-IPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRREV 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +S+     I  GDL ++L    V+ +G  I LT +E+++++ L+  +    ++E  L+
Sbjct: 122 EVKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELLS 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +++ +DV + +LR+K+ +      YI TV G GY  
Sbjct: 182 SVWGYEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGYYF 226


>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 222

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G A  +   G+L ++  A+ V +    I LT KE+ ++E L LR    ++K   L H+
Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  I++V+I  LR+KL     G   I+TV G GY L 
Sbjct: 181 WDFAYDGDPNIVEVYISTLRRKL-----GPTLIKTVRGAGYRLE 219


>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
           Bt407]
 gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 243

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 136 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 243


>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
 gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 241

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 241

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V   + G       +    D I+LD+ L D+ GF 
Sbjct: 16  KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A ++TPV  L+    + DK++GL  G DDY++KPF  EE+VARIRAI+RR+ G
Sbjct: 76  VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMG 135

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GDL ++ DA  V+  G  I L+  E++++  L +     ++K   L+H++
Sbjct: 136 GDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   + EV I++ +I  LR+KL+        I T  G GY+LR
Sbjct: 196 EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYILR 238


>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   +  +L    F        + G+        D ++LD  L    G ++
Sbjct: 5   ILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGSGIQL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +ALR  + +   P+ +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RRS 
Sbjct: 65  AKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRRSA 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L ++  +  V V+   + +   E++++           ++E  L++++
Sbjct: 125 PTRLEEAVEVQGLRLDPVSHRVTVEEQGLDMGPTEFRLLHFFMTHPERVYSREQLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 185 GTNVYVEDRTVDVHIRRLRKAIQE-TGHDKLIQTVRGAGYRF 225


>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
           SK119]
 gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 241

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 131/237 (55%), Gaps = 10/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++    G++  EL    ++  I+LDL L ++ G E+
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMDGIEM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  SSKLREHK-DTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQTS 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ +I    L ++ DA  V     +++LT KEY+++  L+   N    +E  
Sbjct: 124 KPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY    N  DE+ 
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVNTNDESS 240


>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
 gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
          Length = 221

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 86/219 (39%), Positives = 135/219 (61%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   LK  N++V     GE+ ++   + E+D II D+ + ++ G+
Sbjct: 1   MKILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR +K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  EFIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V   G  I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +    I+DV I  +RKKL +    K  I T  G GY
Sbjct: 181 YDYDGASNIVDVIIKNIRKKL-DNGTDKTIIYTKRGLGY 218


>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+A+A      L++ ++ V + + GE G++     +F  I+LD+ L    GF+
Sbjct: 3   RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115
           V R LR  K + P+ ++S      DK+RGL  GA+DYI KPFN  EL+AR+++       
Sbjct: 63  VCRNLRAVK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +     ++ +   +L+++L++  V + G+ + L  KE++++  L+   N   +K+   
Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E+  + V I ++R+K+   +    +IETVWG GY  R+
Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229


>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 231

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   +K   F+V V   G +G+ L    EFD  +LD+ L D+ GF 
Sbjct: 7   RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+  L+   S++D V+GL  G DDYI+KPF+ EE+VARIRA++RR++ 
Sbjct: 67  VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKA 126

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GDL ++ D+  V   G  I ++  E++++  L L     ++K   L+H++
Sbjct: 127 DDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     E  I++ +I  LR+K+         I T  G GYVLRE 
Sbjct: 187 DYDFRGEAGIVESYISYLRRKIDVDGLEP-LIHTKRGVGYVLREP 230


>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 224

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I+TV G GY+L    
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPP 220


>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
          Length = 239

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+  +   + + L+ EN+ +     G + +EL     +D I+LD+ + +  G 
Sbjct: 5   IRILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPEKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +A+R  K +TPV +L+      ++V+G + G DDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCQAIREKK-ATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTS 123

Query: 121 GHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +           L+V   L+++ DA  V      ++LT KEY+++  L+        +
Sbjct: 124 TQSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAK 226
           E  L  ++      +++ +D  + +LR+KL+  +      I TVWG GY     ++
Sbjct: 184 EQLLKEVWHYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGYKFEVGSE 239


>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
 gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  +EL L+++ + V+    G+D ++     + D  ILD+ L DI GF
Sbjct: 5   MNILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 65  QILKQIRQ-KYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCT 123

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +       ++  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 124 QYNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 183

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +        + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 184 FEKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233


>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
 gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
 gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
 gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
 gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
           sp. T7-7]
          Length = 233

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      E    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGITL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   +  DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     V   G  + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRAQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L      +N+IETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-GKLENHIETVRGAGYRF 225


>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 235

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G EV
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRTTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDS 122

Query: 123 ------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       A+ ++  G + ++++  TV V    + +  KE+ ++E L       LT
Sbjct: 123 GAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVLT 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   ++ ++      + K +DV + +LR K+        ++ TV G GY   
Sbjct: 183 RGQLIDRIWGADYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234


>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 235

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 120/235 (51%), Gaps = 15/235 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   ++  L+   F V     G++ +E       D ++LDL L +I G E
Sbjct: 3   KILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDGME 61

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  +      + +L+      +++ GL+ GADDY++KPF+  EL+ARI+AI RR 
Sbjct: 62  VCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFRRM 121

Query: 120 RGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +I+ GD  +++    V+ +   I LT KE++++  L L +   L++ 
Sbjct: 122 EELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLSRN 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + L  ++      + + +DV I +LRKK         YI+TV G GY   +   D
Sbjct: 182 LLLEKIWGYEYAGDTRTVDVHIRRLRKK-----SSSEYIKTVRGVGYKFVKVETD 231


>gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36]
 gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36]
          Length = 224

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++  L    FNV + D G DG+      ++D ++LD+ L  + G+
Sbjct: 1   MKILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR+     PV +L+    + D+V+GL+ GADDY+SKPF+  EL+ARI   +R   
Sbjct: 61  DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLRDKG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL  N   + V+  G  I LT KE+ ++E L  R+   L+K    +H++D
Sbjct: 121 STHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  II+V I +LR K+         I TV G GYVL 
Sbjct: 181 INFDSDTNIIEVAIKRLRNKIDQGFSSP-LIHTVRGMGYVLE 221


>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 223

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   I+D+ L  + G 
Sbjct: 1   MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  KI TP+ ILS   S+ED+VRGL++G DDY+SKPF+  EL+AR++A++RRS 
Sbjct: 61  QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +  G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+      +  + T+ G GYVL+E
Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRD-YDRKMLHTLRGVGYVLKE 223


>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 228

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL LK E + V + + G  G+E     + D ++LD+ L  + G E
Sbjct: 3   KILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R+     P+ +L+    + DKV GL  GADDY++KPF  EEL+ARIR  + R   
Sbjct: 63  VCRRIRMES-QVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    Q ++  G+L +NL + +       + LT KEY+++E L   KN  LT+E  LN+
Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D     +  ++DV+I  LR+K+ +   G + I TV G GY++R+ 
Sbjct: 182 VWDYEYFGDTNVVDVYIRYLRQKI-DDKYGVHLISTVRGVGYIIRDE 227


>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
 gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
           15053]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL L+S+ ++V+    G++ ++     + D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  QILKQIR-GKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++ +        + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FEKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229


>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
 gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
 gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
 gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. NATL1A]
          Length = 245

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 120/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLTD 56
           R+L++EDDK++  ++   L +E + V V   G++             + D I+LDL L +
Sbjct: 14  RLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN 73

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G E+ R +R   I TP+ I+S   S  D+V GL+ GADDY+ KPF   EL+AR RAI+
Sbjct: 74  LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAIL 133

Query: 117 RRSRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS  + +       ++   ++S+      V      I+L  KEY+++EL         +
Sbjct: 134 RRSETNHEKTQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVWS 193

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  ++      + K +DV I  +R+K+ + A   +YI TV G GY  
Sbjct: 194 RDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
 gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 224

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+ ALA  +   L    + V V   G D   L +   +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A++  PV IL+   S  +KV G+ +GADDY++KPF  EEL+ARIRA++RR+ 
Sbjct: 61  SVLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G + +N  A  V V G  + LT  E+++++ L       ++K     H+Y 
Sbjct: 121 GMPAPELQCGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LR+KL         IETV G+GY +R  +  + 
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIETVRGQGYRMRPPSPPQP 224


>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A   +  L+  NF V +   GE G++      +D  ILDL L  I GFE
Sbjct: 3   RILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +++      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  LCKRIREVK-NVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             QS       I    L ++  ++ V + G     T KE+ ++  L+   N   +KE   
Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+      ++  + V + K+R+K+        YIET+WG GY  +
Sbjct: 182 ETLWGEESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRFK 228


>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 223

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 130/222 (58%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E+VAR++AI+ R+ 
Sbjct: 63  SLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTS 121

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++        +S+N+ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 122 GESEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 220


>gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 245

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M++L+IED+K+++  + +  + E ++V     G + +++       +D I LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163
           +   AQ                I T    +N + +   + G  I  LT KE++++  L+ 
Sbjct: 121 AHTEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238

Query: 224 NAKD 227
           +  D
Sbjct: 239 SEVD 242


>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
 gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
           27755]
          Length = 229

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A   +  L+   F V V + GE G+E     E+   ILDL L  + GFE
Sbjct: 3   KILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKKIREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228


>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
 gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Sinorhizobium meliloti
           1021]
 gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 223

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VFI +LRKK+ N       IETV G GY ++   
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220


>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  275 bits (704), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E + V +   G + + + +  + + ++LD+ L  I G EV
Sbjct: 4   ILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLEV 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R     +  PV +L+      DKV GL+ GADDYI+KPF+  EL+ARIRA +RR +
Sbjct: 64  LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRLK 123

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I+  DL ++LD   V V+G  I LT KE++++ +L+       T++  L  ++
Sbjct: 124 PSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV +  LR+K+        YIET+ G GY L+
Sbjct: 184 GYEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRLK 226


>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
 gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
          Length = 229

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A      L+  ++   +   G++G+E  K   +  ++LDL L D+ G+E
Sbjct: 3   RILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R      P+ +++  +   D +RGL  GADDYI+KPFN  +L+AR++A + R   
Sbjct: 63  ICRQIREIS-EIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +  +    L +    + V V      LT KE+ ++  ++   N   +KE  L
Sbjct: 122 LVSRGQNKEEDMRIRGLHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEHLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +V  + V I +LR+K+       +YIETVWG GY  +
Sbjct: 182 EQVWGFDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGYRFK 228


>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
           ATCC 10712]
          Length = 242

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +       G D +   + Y  D ++LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R +  + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++   DL ++L  + V   G  + LT  E+ ++E+        LT+E 
Sbjct: 130 ARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTREQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    EP    +DV++  LR+K + A G    + TV G GY LR
Sbjct: 190 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALR 237


>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
 gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
          Length = 253

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G + +E  +    D ++LD+ +  + G+ V
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDGYGV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 76  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 134

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 135 QVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 194

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 242


>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis C231]
 gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis 1002]
 gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
           pseudotuberculosis I19]
          Length = 231

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+++LA  +  +L+ E F V V   G   +   +  + D ++LDL L  + G +V
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKRLRKVS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEP 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G + ++++  TV V G  I +  KE+ ++E L       LT+   
Sbjct: 123 QVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ ++      + K +DV + +LR K+        ++ TV G GY   +
Sbjct: 183 IDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGYKFED 231


>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
 gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
          Length = 219

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K LA  IEL L  EN+ V + + G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQQQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPK- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  I    + ++ +A  V V G ++ LT  EY +  +L+  KN  L +E  LNH++   
Sbjct: 122 -KDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL    G    IETV G GYV+R
Sbjct: 181 TEVETNVVDVYIRYLRNKLKP-FGKDKVIETVRGVGYVIR 219


>gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120]
 gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120]
          Length = 610

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 121/231 (52%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  +++ V +   GE   EL     ++ I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A     + +L+   S  DK+ GL +GADDY+ KPF+ +EL ARIRA++RR  
Sbjct: 61  SLCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++  +  V      ++LT KE+ ++EL       T ++   +  L+ 
Sbjct: 121 TSLPPVLAWGSLRLDPSSCEVTYADKPLNLTAKEFSILELFLRNNQRTFSRGAIVEKLWS 180

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              D PE   I   I  LR+KL  A     +IETV+G GY L+  A +  C
Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLQAAGANYAFIETVYGMGYRLKALAHEANC 231



 Score = 76.1 bits (187), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+  L + +   L++    V      +   +    +  D +ILDL +  I G E
Sbjct: 476 KIMIVDDNLHLLNFLHRYLEALGITVKALKEPQYFWDTLIEFSPDLLILDLEIPHINGIE 535

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + + +R        PV  L    ++    +    GADD+++K      LVA+I   + R
Sbjct: 536 LCQVVRNDPYWQFLPVLFLVNNFNVNTFEKIFAVGADDWVNKSVIDSRLVAQILQHLER 594



 Score = 46.0 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 1/99 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I +D+ + + +     +    V +T        +      D +ILD+ + +     +
Sbjct: 355 LLVISNDQQVFNGLLDEAVNLGIKVKITHDIAGSRTIIASLNPDVVILDIDI-EEDSLSL 413

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK 101
           LR L       P+ IL+  ++   +V   ++G   ++ K
Sbjct: 414 LRELSQLSPQIPILILTNQNNFIKRVEVARAGGCAFLPK 452


>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
 gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST196]
          Length = 232

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E 
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKET 230


>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 230

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  F   + + G+D +E    + FD +ILDLGL D  GF+
Sbjct: 3   RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ LR    + P+ IL+    + DKV GL++GADDY++KPF   EL+AR+RA +R    
Sbjct: 63  ILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQPS 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   + T ++ +NL  + V+V    + L+ KE+ ++E         L++E  L+ +
Sbjct: 123 KNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL +       IETV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGSD-----RIETVRGMGYRL 220


>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 243

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E+ +  E D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 236

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +  ++    V +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEM-QSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GDL ++   + V ++  +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E 
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEEP 234


>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
           YS-314]
 gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 233

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+ A+  S+   L    +NV   + G   +E+ +    + +ILD+ +  + G 
Sbjct: 1   MKVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR       + IL+   ++ D+V GL +GADDY++KPF  EEL+AR+R++VRRS 
Sbjct: 61  EVCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSA 120

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + Q+ +  GDL++N + + V      I LT  E+ ++ELL       L + 
Sbjct: 121 VESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRN 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++          ++V+I  LR+K     G    I TV G GYVLRE A 
Sbjct: 181 TILEEVWGYDFPTSGNALEVYIGYLRRKTEQE-GESRVIYTVRGVGYVLRETAP 233


>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Rv]
 gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis AF2122/97]
 gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis GM 1503]
 gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T17]
 gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis 210]
 gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
 gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN R506]
 gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN V2475]
 gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium tuberculosis H37Rv]
 gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
 gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
           REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
           [Mycobacterium bovis AF2122/97]
 gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
           tuberculosis H37Ra]
 gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis F11]
 gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T46]
 gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 605]
 gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis K85]
 gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis T17]
 gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis 02_1987]
 gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis GM 1503]
 gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
           [Mycobacterium tuberculosis T85]
 gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu002]
 gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu007]
 gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu008]
 gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu009]
 gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu010]
 gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis W-148]
 gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis KZN 4207]
          Length = 227

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 252

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+   F+V     G D + L +  + D ++LD+ L D+ GF V
Sbjct: 14  LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A    PV  L+      DK+ GL  G DDY++KPF+ EE+VARIRA++RR+   
Sbjct: 74  TRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHAL 133

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++  GDL ++ D   V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 134 DEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLS-----NAAGGK------NYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+      + AG          I+T  G GY+LR
Sbjct: 194 EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYMLR 247


>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
          Length = 236

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +  ++    V +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEM-QSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GDL ++   + V ++  +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E 
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGSEEP 234


>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
          Length = 239

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ ++   +       ++   L
Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
 gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   I   L+ E +       G + +EL K    D I+LD+ +  + 
Sbjct: 2   MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKLD 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R       + +L+  S+  DK+ G + GADDYI+KPF+ + LVA+I A+++R
Sbjct: 62  GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 121

Query: 119 SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   AQ    +   G L++N  + TV + G  I LT KE++++  L   K   LT+EM +
Sbjct: 122 ADAGAQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMM 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++      +++ +D  I +LR+KL         I TV G GY L 
Sbjct: 182 NLVWGYEYYGDLRNVDSHIKRLRQKLK---SEGRLITTVRGSGYKLE 225


>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
           transcriptional regulator [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 227

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+    + ++  L    F V +   GEDG+       +D +ILD+ L  I G+
Sbjct: 1   MKILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VLR +R +    PV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +       I TV G GYVL   A
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKM-DDGFEPKLIRTVRGMGYVLEVTA 225


>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
 gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+      +   L+   F V     G +G++L     ++ +ILD+ L  + G+
Sbjct: 1   MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  +  TPV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  QLLRELRKVR-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SLI   D+ +++  + V   G R+ LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++DV I +LR KL +    +  I+TV G GYVL E
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKL-DDPHPRKLIQTVRGIGYVLEE 221


>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
           MC2 155]
          Length = 225

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++LA  +  +L+ E F   V   G   +   +    D ++LDL L  + G +V 
Sbjct: 2   LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   + 
Sbjct: 62  KQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 120

Query: 124 QSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +  G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 121 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 181 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 224


>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
 gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
          Length = 254

 Score =  275 bits (704), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ ++   +E  L    + V     GE+ + L      D +ILD+ +  + G+ 
Sbjct: 16  KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIRA++RR+  
Sbjct: 76  VCQEIRKDS-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNK 134

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I    L+++L+ + +     RI LTG E+ ++ELL  R     ++   
Sbjct: 135 AAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADI 194

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL       + I T  G GY+ +
Sbjct: 195 LQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLFQ 244


>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 239

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +   L+S  + V     G++ + + +  E   IILDL L  I G EV
Sbjct: 8   ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDGLEV 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+ +    DK+ GL+ GADDYI+KPF+  E+VAR+RA++RR  
Sbjct: 68  CRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRRVE 127

Query: 121 GH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S+    DL ++     V + G R+ LT KEY+++++ +       ++E  
Sbjct: 128 DRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSREHL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
           L  ++      + + +DV +C LR+KL         YIETV G GY  
Sbjct: 188 LEKVWGYDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGYRF 235


>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 245

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 10  KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDGYG 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 70  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 128

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 129 VGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 188

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 189 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 237


>gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 227

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ L   +   L+   + V     GE+G  L +   +D IILD+GL    G 
Sbjct: 1   MRLLIVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAYLGETEPYDCIILDMGLPKQDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A++ TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  + LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKKL+        I+TV G GY++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDP 218


>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 231

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 11/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+K +A  +E+ L+++ F V+    G++ ++  +    D  ILD+ L DI 
Sbjct: 1   MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPDID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF + + +R  K   PV +L+      DK+ GL  GADDYI KPFN  E++AR++  +RR
Sbjct: 61  GFTICQKIRE-KYFYPVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRR 119

Query: 119 SRGHAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
              + Q               L +N       + G +I LT  E+ ++  L   +   ++
Sbjct: 120 YTKYNQVETVVEEKEEHDIKGLVINKTTHECTLFGEKIELTPIEFSILWYLCENRGKVVS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E     ++  +       +   I +LR+KL        +++TVWG GY + 
Sbjct: 180 SEELFEQVWGEKYYDSNNTVMAHIGRLREKLHEPPRKPKFVKTVWGVGYKVE 231


>gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
 gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
          Length = 227

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   LK E + V     G   I       F  +ILDLGL    G 
Sbjct: 10  MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K  TPV + +   ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS 
Sbjct: 70  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G L++N   + V   G  + L+ KEY ++  L+ R    L++      LY+
Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+V I  LRKKLS  +     I+TV G GYVL 
Sbjct: 190 YESLIGSNAIEVHIHHLRKKLSEDS-----IKTVRGVGYVLE 226


>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 226

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +   I+  L + +++VY    G   +E  +    D ++LDL L D  G 
Sbjct: 1   MKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R    + P+ +L+  S  +D + GL+ GADDY+ KPF+ +ELVARI+ ++RR+ 
Sbjct: 61  TVCRKIREVS-NVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTE 119

Query: 121 GHAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         G+L V  +++ V +    ++LT  E+ ++  L    N   ++   +  
Sbjct: 120 TLSNPNKLSSSNGELIVYPESRHVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + ID  I  LR K+ N A    YI TV G GY  
Sbjct: 180 VKGIEFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223


>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
 gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
           BMB171]
          Length = 232

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G RI+LT  EY +  L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|291534287|emb|CBL07399.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI L ED++ L   I   L  + ++V     G   I++    E+DA+ILD+ +    GF
Sbjct: 1   MRIFLAEDEQDLNAIIVQKLTEDGYSVDHCFDGRTAIDILSCTEYDAVILDIMMPKADGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR    +TPV  L+   ++ D+V+GL SGA+DY+ KPF+ EEL AR+RA++R S 
Sbjct: 61  TVLRALRGMGKTTPVLFLTAKDAVSDRVKGLDSGANDYLVKPFSFEELSARLRAMMRGSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DLS++  +  V   G  I L+ KEY M+E     +   L++EM  +H+++
Sbjct: 121 GVTDNVLHIADLSLDCTSHRVMRGGKEITLSAKEYAMLEYFMYNQGRVLSREMIEDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    I+DV+I  LRKK+ +    K  I TV GRG+++RE 
Sbjct: 181 FDYEGGTNIVDVYISYLRKKI-DGGYDKKLIHTVRGRGFIMREE 223


>gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577]
          Length = 245

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 19/244 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M++L+IED+K+++  + +  + E ++V     G + +++       +D I LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    S P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+ RR
Sbjct: 61  GMEVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163
           +   AQ                I T    +N + +   + G  I  LT KE++++  L+ 
Sbjct: 121 AHTEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQ 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++      + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 KPRQVFSREQLLELVWGYEYYGDERTVDAHIKKLRQKIERV--GPQVIQTVWGVGYKFDD 238

Query: 224 NAKD 227
           +  D
Sbjct: 239 SEVD 242


>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 132/224 (58%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  + L L+ E + V V + G DG++  +   FD ++LD+ L ++ G E
Sbjct: 5   KILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPELSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VLR +R    +TP+ +++   S+ DKV GL  GA+DYI+KPF+ EEL+ARIRA +R    
Sbjct: 65  VLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIN 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   ++ +   DL+VN   + ++  G  + LT +EY ++  L   +   LT++  L  +
Sbjct: 125 EQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+ +    K  I TV G GYV++
Sbjct: 185 WGFDYFGDTNVVDVYIRYLRKKV-DYPFEKQLIHTVRGVGYVMK 227


>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 249

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 126/235 (53%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  +   L    ++V     G D + + +  + D I+LDLGL  + G E
Sbjct: 14  RVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGVE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       V +L+      D++ GL  GADDYI+KPF+  ELVAR++A++RR R 
Sbjct: 74  VCRQIRTFS-DCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQ 132

Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        +   + GDL+++   ++V V G  + LT  E+ ++++LS R     +
Sbjct: 133 RGAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFS 192

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   ++ ++D     +  I+DV +  +R+KL +      YI+TV G GY + + A
Sbjct: 193 RRQLIDEVWDIAWVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRMGQGA 247


>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
           [Shewanella denitrificans OS217]
 gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F     +  +  I L +    D I+LD       G +
Sbjct: 4   RILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  K +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLQLDPVSHRVCVGDSVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVE-NTGHDRLIQTVRGAGYRF 225


>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F   V +  +  +   +    D I+LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   PV +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RR+
Sbjct: 64  LAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L+++  +  V      + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLTLDPVSHRVTAGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEP-SGHDRLIQTVRGAGYRF 225


>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  ++    F     +  +  IEL K    D I+LD       G +
Sbjct: 4   RILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLQLDPVSHRVTVGDAVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-GGHDKLIQTVRGAGYRF 225


>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
 gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
 gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 241

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQVQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
 gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
           CGD1]
          Length = 239

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G  G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  + E     ++  I +LR K+         I TVWGRGY L    + + 
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPEQRDA 239


>gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 231

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   +   L++E + V     G   +   +    D ++LD+ +    G++V
Sbjct: 7   VLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R  +   PV  L+      DK+RGL  GADD+I K     E+VARI+A++RR R  
Sbjct: 67  LRRIRENR-DVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRG 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L +++ A  V V G  + LT +E+++++L +       T+E     L+
Sbjct: 126 EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +  +   + V I +LR+K+        YI TVWG GY     A+
Sbjct: 186 G--EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230


>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 234

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L +E F V+    G   + L +  + D ++LD+ L  + G EV
Sbjct: 6   ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R L     S  V +L+  +   DK+ GL  GADDY++KPF+  ELVAR++AI+RR+R  
Sbjct: 66  CRQL-HRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRVI 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + + ++    L ++ + + VE  G R+ LT +E+ ++  L+       T+E  L 
Sbjct: 125 RAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELLQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++         ++DV I  LR+KL +   G   ++TV G GY   
Sbjct: 185 RVWGPDFAGIDWVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKFV 230


>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           CDC1551]
 gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu001]
 gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu003]
 gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu004]
 gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu005]
 gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
           tuberculosis SUMu006]
 gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu011]
 gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis SUMu012]
 gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
           tuberculosis CDC1551A]
          Length = 230

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 7   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 67  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229


>gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510]
 gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510]
          Length = 226

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +   LK     V V + G++G+ L     +D +I+D  L    G 
Sbjct: 1   MKILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +++ LR A   TPV  LS + S++D+V+GL++G DDY++KPF   EL+ARI  +VRR  
Sbjct: 61  SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  GDL ++L +++V+  G  I L  +E+ ++E L     + +T+ M L +++
Sbjct: 121 AAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR+K+         I TV G GY LR
Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDFPTP-LIHTVRGAGYSLR 222


>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E       +   + +EL +   FD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR   
Sbjct: 64  ACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + +S++  GDL+VN D + V ++G  + LT KE+ ++ELL+  K   L+     
Sbjct: 123 YNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 EAVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 135/222 (60%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++++ + ++++L+ E + V   + G+D IE+ K    D IILD+ L D  GF+
Sbjct: 3   KILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ + V     P+ +L+  + I DKV GL+ GADDY++KPF+  EL+AR++A++RR   
Sbjct: 63  ILKKI-VPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    GDL VN D   V+ +G  I+LT KE+ ++++L   K   LT+E  L+ ++
Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + +++D+ I +LRKK+ +      YI TV+G GY  
Sbjct: 182 GYDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGYKF 223


>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
          Length = 248

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 75  ICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   + +D
Sbjct: 195 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEED 247


>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
 gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           Finland 1988]
 gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           R2-561]
 gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           10403S]
 gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           J0161]
 gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
 gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
 gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J2-003]
 gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
 gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
 gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
 gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
 gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
 gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
 gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 238

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 232

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|300864039|ref|ZP_07108940.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300337962|emb|CBN54086.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  + + V     G+  + L +    D +ILD+ L D  G++
Sbjct: 5   KILVVDDDPAIRNLIHRYLSQQGYQVESAGDGQTALGLFEQLNPDFVILDVNLPDTTGYK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK++G +SG DDYI+KPF+  E+  R+ AI++R R 
Sbjct: 65  LCQEM-QSRTGVFVVMLTSRTDEADKIKGFESGVDDYITKPFSLVEIGFRVGAILKRKRI 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  ++ G L+++   + V + G  + LT  E+ ++  L+ +      +   L  +
Sbjct: 124 VTPAEQQSLIFGPLAIDPVRREVMLSGQTVSLTALEFDLLYCLASKPGRVWRRAELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + +++DV I ++R+K+   A   + I+TV G GY   
Sbjct: 184 WDYEYVGDQRVVDVHIGQIRRKIEPDANQPSMIQTVRGVGYKFE 227


>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 232

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +D+  +   + L  K E F V     G + +   +  + D I+LD+ +  + GFEV
Sbjct: 7   VLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPVLDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R      P+ +L+     +D++ GL+ GADDYI+KPFN  E+VAR++A++RRS   
Sbjct: 67  CKQVRKIS-DVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSSQF 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + ++   DL +NL    V   G  +  T KE +++  L+       ++   L  +
Sbjct: 126 LQSQNKQVLEYPDLMINLSEYRVVAFGREVIFTAKEMELLWCLASNPGIVFSRNQLLEKI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I ++R KL      K  I TVWG GY   
Sbjct: 186 WGYTYYGDTRTVDTHIKRVRHKLDIPKDAKWDIVTVWGVGYKFE 229


>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
 gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
           14469]
          Length = 249

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED + +   I   L +E+++V     G++ ++  +  E+DA+ILD+ +  + G +
Sbjct: 21  RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  K   PV +L+ M SIED+V GL +GADDY+ KPF  EEL+AR+R ++R+   
Sbjct: 81  VLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPAA 140

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++   GDL V++D + V   G  I L+GKE+ ++  +       L++E    H+++ 
Sbjct: 141 VKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIWNY 200

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +IDV+I  LRKK+ +    K  I TV G GYVL++  
Sbjct: 201 DYTGSSNVIDVYIRYLRKKI-DDGYEKKLIHTVRGAGYVLKDTP 243


>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 232

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 3/233 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED+  L   I   L      + V   G  G+E+   ++FD IILD+ L+ + G 
Sbjct: 1   MKILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R    + PV +L+ +SS E+ + GL SGADDY+ KPF   EL ARIR++VRRS+
Sbjct: 61  QVCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRRSK 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S      L V+  AKTV   G  I+LT  EY+++E     +N  L++   L ++
Sbjct: 121 VVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATEYRLLEYFIQNQNVVLSRIQILENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +D        ++DV+I  LRKK+ +       I TV+G GY+ +  A +E  +
Sbjct: 181 WDIDFNMGTNVVDVYINYLRKKI-DNGYQTKLIHTVFGMGYIFKSQAPNEDTD 232


>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRS 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++   G++ ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  R     + +D F+ +LR  + + A    ++ETV G GY  
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228


>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 225

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK ++  I   L  E + V V + G++G+ L    E D IILD+ + D+ G E
Sbjct: 4   KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + LR      P+ +++GM SI D+V GL++GADDY+ KPF  EELVAR++A++RR   
Sbjct: 64  VCKRLRKD-AGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      ++  DL V+L  +        I  +  E+ ++          LT+E+ ++ ++
Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  +++V++  LR KL  A      I TV G GYVLRE
Sbjct: 183 GFDFRGESNVLEVYVGYLRSKLE-AQNEPRLIHTVRGAGYVLRE 225


>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 226

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD  L   +E  L  E + V V + G DG+ L +  + D +ILD  L  + G +
Sbjct: 4   HILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR   + TP+ +L+    I D+V GL SGADDY++KPF+ EEL+AR++A +RR   
Sbjct: 64  ICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVNP 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   D+S++     V     R+ LT KE+ ++E L       +T++  L  ++  
Sbjct: 124 EEPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYI-ETVWGRGYVLRE 223
               E  II+V+I  LR KL   A     I +TV G GYV+R+
Sbjct: 184 DFMGESNIIEVYIRALRLKLE--ASNPQRILQTVRGVGYVIRD 224


>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
 gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
 gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
 gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 301]
 gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
           str. 2457T]
 gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
           str. 8401]
 gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
           flexneri 2002017]
 gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2a str. 2457T]
 gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2747-71]
 gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-671]
 gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 2930-71]
 gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-304]
          Length = 229

 Score =  274 bits (703), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS+N  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 232

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 228

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +EL L  E + V V   G  G E       D IILDL L ++ G E
Sbjct: 4   RILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    + DKV GL SGADDY++K F  EEL+ARIR I++R   
Sbjct: 64  VCRRVRKES-DVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + ++I  G L +  D   V  +G  I L+ KE+++++ L   K   L++E  L+H++
Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +  + DV+I  LR K+        +I TV G GY+ +++ +
Sbjct: 183 GYDYYGDTNVTDVYIKYLRNKIDQKF-DVRFIHTVRGVGYIFKQDEE 228


>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
 gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    E+D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 226

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +       G  G++  +    D I+LDL L  + G EV
Sbjct: 4   VLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+ ++ +   PV +L+      D+V G + GADDY+ KPF+  EL+ RI+A++RRS 
Sbjct: 64  CKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSL 123

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S   +  G ++++ D  TV V G  I LT  E++++  L+ R     ++++ L ++
Sbjct: 124 PDEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +D  I +LR KL  A    + I+TV G GY + E 
Sbjct: 184 WGYNYVGDTRTVDTHITRLRTKLGPAG---DLIKTVRGFGYKMEEP 226


>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 241

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 70/238 (29%), Positives = 132/238 (55%), Gaps = 10/238 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++L L+ E+F ++  + G +   +   +++  I+LDL L ++ G  V
Sbjct: 5   ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMDGITV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR  K  TP+ +L+      ++V G +SGADDYI KPF+  E+V R++A++RR++  
Sbjct: 65  ASKLREHK-ETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQVA 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  HA+ LI    L ++ DA  V   G +++LT KEY+++  L+   N    +E  
Sbjct: 124 TAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++      +++ +D  + +LR+KL+  +    + I+TVWG GY     + +E+ +
Sbjct: 184 LKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEIKSNNESTQ 241


>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 234

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++++   +E +LK E + +   D GE  +E  +    D +ILD+ L  I G+E
Sbjct: 6   KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +LS    I DK  G   GADDY+ KPF+  EL  R++A++RRS  
Sbjct: 66  VCRTIRETS-KVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFD 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             QS         I  G+L +N ++  V V+G  ++LT KE++++  ++   +   T+E 
Sbjct: 125 KEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              H++      +   I VFI KLR+K+        YI+TVWG GY  
Sbjct: 185 LFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232


>gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL IED+  +A+ +   LK + F V   D G++G       E+D I+LD+ L    G 
Sbjct: 1   MHILYIEDEAKIANFVCAGLKEQGFVVDYIDNGDEGYYRAMENEYDVIVLDIMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR A  + PV +L+  + ++D++ GL  GADDY+SKPF  EEL+ARI A++RR  
Sbjct: 61  AILKSLRRAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPFFVEELIARIHAVIRRIS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+++  G L+++   + V      + LT +E+ ++E L        T+   L H++ 
Sbjct: 121 GERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMRSPGRVFTRTQILEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               P   ++DV + +LRKK+   AG  ++I++V   GY+ R++ K
Sbjct: 181 YDFNPNTNLVDVCVQRLRKKIEKVAGD-SWIDSVRSVGYLFRKSGK 225


>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 231

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      +I+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSN 230


>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 6   ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E    
Sbjct: 125 SGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 225

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 126/223 (56%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + + L L++ +F V+    G++ +E  K  +   +ILD+ + ++ G E
Sbjct: 4   KILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +       P+  LS  SS++DK+ GL  GADDY++KPF+  ELVAR+ A++RR+  
Sbjct: 64  VLKTI-GNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + ++I  G+LS + D + +   G+ ++L  KEY+++ +         TK+    +L+  
Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   I V I  LR+K+ +       I T+ G GY+LR+ 
Sbjct: 183 YYFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYMLRKE 225


>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 227

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGED 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
 gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
           carboxidovorans OM5]
          Length = 224

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL + R  K   PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ I +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGSVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL     G   I+TV G GY+L   + D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKL-----GVEIIQTVRGLGYLLAPPSPD 222


>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
 gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
          Length = 247

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K +A  +EL L+ E ++V V   G +G+ L     FD ++LD+ L  I G E
Sbjct: 26  KILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR+  
Sbjct: 86  ICRRIRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  +
Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E  ++DV+I  LR KL        YIETV G GYV+RE
Sbjct: 205 WGYDTDIETNVVDVYIRHLRSKLPGDTNA--YIETVRGVGYVMRE 247


>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
 gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F     +  +  I L K    D I+LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225


>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
           Clip81459]
 gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J2-064]
 gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
           J1-175]
 gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
           H7858]
 gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           R2-503]
 gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
           HPB2262]
 gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           J1-194]
 gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
           N1-017]
 gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
           1816]
 gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
           220]
 gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
           str. Scott A]
          Length = 238

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  +EL L++EN+N+Y      + ++     ++D  ILD+ +  + GF++
Sbjct: 5   ILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPVMDGFKL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  K + PV +L+      DK+ GL  GADDYI+KPF+  E+VAR++A +RR   +
Sbjct: 65  CQKIRE-KYNFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRRFTRY 123

Query: 123 AQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + +  + D      L +N       +    + LT  E+ ++ +L   +   ++ E    
Sbjct: 124 NEGIQQSNDILEVSSLIMNKTTHECSLNEQPLILTPTEFSILWILCENRGQVISSERLFQ 183

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +        + V I  LR+K+    G   +I+TVWG GY + +
Sbjct: 184 EVWGEKYFSGSNNTVMVHIRHLREKMKEPEGNPKFIKTVWGVGYKIEK 231


>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
 gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 257

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E + V +   G + +        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 152 QQTPPADETLKVGDLRLDTASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRSEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        I+D++I  LRKK+   +G +  I TV G GY+LR  
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRPP 256


>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 226

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ + +  +  +L+ E   V V + G  G+E       D ++LD+ L  + G E
Sbjct: 3   RILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    S P+ +L+   S  DKV GL+ GADDY++KP++  EL+ARI A++RR   
Sbjct: 63  VCRELRRES-SVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  GD+ ++ D+  V V+G  + +  KE++++E+L       LT+   ++ +
Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I ++R K+         I T+ G GY   
Sbjct: 182 WGADYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225


>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 227

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+++A  +   L++++F V      E+  E  +    D +ILD+ +    GF  
Sbjct: 6   ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R  K   P+  LS  S+  DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 66  CRRIRA-KSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASN 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++++  G L++NL  + + V G  + LT KEY++++L         + +  L+ L+
Sbjct: 125 QPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG    +   + V + +LR+K+        YI  VWG GY   
Sbjct: 185 DG--VGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225


>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 239

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/232 (33%), Positives = 129/232 (55%), Gaps = 10/232 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+IED+  L+  +   L  E F V V + G  G E    +E+D I+LD+ L  + GF++L
Sbjct: 2   LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQIL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR + I+TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR  GH 
Sbjct: 62  EKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHV 121

Query: 124 Q---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++I  G L +  +   V + G  I+L  KE++++  L+ +    LT++  
Sbjct: 122 EEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N ++        + +DV +  LRKKL        +I+++ G GY L  N K
Sbjct: 182 MNVVWGFDYIGGQRTVDVHVSSLRKKLELDP-ESVHIDSIRGVGYKLVVNPK 232


>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
 gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
           49176]
          Length = 223

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  E + V   + GE  +++       + IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R    + P+ +L+  S  +D+++G + G D+Y+SKPF+ + L+AR+ AI+RRS 
Sbjct: 65  QVCREIRR-HSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSG 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G + ++  +  V + G  + L+ KE++++      K   L++E  LN++++
Sbjct: 124 AVSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+ +     + I+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGDKG---DLIKTIWGIGYKFE 222


>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
 gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 228

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 132/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G DG+ L      D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R  K +TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GILAAVRARK-NTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 AQEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +  +IDV + +LR KL +       + TV G GYVL    + +  
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPYDTKLLHTVRGMGYVLESRGQAQPT 228


>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 239

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 123/234 (52%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++  R E     ++  I +LR K+         I TVWGRGY L    + +T
Sbjct: 186 NAVWGYRHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKLAAPDQRDT 239


>gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    E+D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +++++LR ++ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++L  +     G +I LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +IDV I +LR K+ +       I+TV G GYVL    +
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKI-DDHFEPKLIQTVRGMGYVLEAPEE 226


>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 237

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ +L   +   L    F V     G++       +  D ++LD+ L    G ++
Sbjct: 4   ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSGVDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +++ +    DK+ GL+ GADDY++KPF+  E++AR+RA++RR    
Sbjct: 64  TRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLDKQ 123

Query: 123 AQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  +          G+L+++ D   V+ QG  + LT KEY+++  ++ R+   L +E  
Sbjct: 124 QEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRETI 183

Query: 175 LNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++      P+ +++D+ +  LR K+ +      +++TV G GY   + A D
Sbjct: 184 LHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFDDQAVD 237


>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 235

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+A+A+ ++  L+ E + V  +  G++G+E  K Y+F   ++D+ L ++ GF 
Sbjct: 4   KLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ ILS   +  DKV+GL+ GADDYI+KPF+  E+ AR+ A +RR R 
Sbjct: 64  LCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYRK 123

Query: 122 HAQSLIVTG------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++LI  G      DL +  + K V + G    +T KE+++++L++   N   +KE   
Sbjct: 124 MDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEELY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +H++D  D      + V I +LR+K+ +++    +I+TVWG GY  
Sbjct: 184 HHVWDSIDLDGNNTVTVHIKELREKIGDSSKNPIFIQTVWGTGYKF 229


>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 116/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 236

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +E+ LKSE +       GE+ + + +    D +ILD+ +  + G + 
Sbjct: 7   VLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNGIDT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +LS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 67  CLKIREER-EMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125

Query: 123 AQSLIVTGD----------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               +              L++NL+   V +  + + LT  E+ ++ LL+  +    + E
Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++         + V I K+R+K+ +      +I+TVWG GY + +
Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 244

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 112/225 (49%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+ED++ LA  I L LK+ N++V      +  + + +  + D I++D  L D  G  
Sbjct: 15  HILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRMLPDGDGIM 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +   LR      P+ +L+   S  D V GL++GADDY+ KPF+  EL AR++A++RR  +
Sbjct: 75  LCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRRGKT 134

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      I    +S+N   + V      + LT +E+ ++  L+       ++   L  ++
Sbjct: 135 QHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFSRMQLLEAVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     ++  I +LR KLS  +   + ++TVWG GY     
Sbjct: 195 GYNYDGYEHTVNSHINRLRNKLSLCSPEHDLVKTVWGVGYKFSPP 239


>gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
          Length = 218

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  ++   LK E + V     G   I       F  +ILDLGL    G 
Sbjct: 1   MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R  K  TPV + +   ++ D++ GL +GADDY+ KP++ +EL ARIRA++RRS 
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G L++N   + V   G  + L+ KEY ++  L+ R    L++      LY+
Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+V I  LRKKLS  +     I+TV G GYVL 
Sbjct: 181 YESLIGSNAIEVHIHHLRKKLSEDS-----IKTVRGVGYVLE 217


>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 227

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 224

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V+GH + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVALDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   I+VF+ ++RKKL         I+TV G GY+L     D
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPPAD 222


>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 233

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 7   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 67  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 126 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 186 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 231


>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  +E+ L S+ + V+  +   DG+++    E   ++LD+ +  + G E+
Sbjct: 7   ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIMMPGMDGMEM 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +LS  S+  DK+ GL +GADDY++KPFN  EL AR+++ +RR    
Sbjct: 67  CRKIRETN-NIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQL 125

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A + I    L +N D   V V G  I LT  E+ ++ LL+       + + 
Sbjct: 126 NPNSAVNEKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTDE 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 186 IFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235


>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 232

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  I + L+ E ++V     GE+ + + +    D +ILD+ +  I
Sbjct: 1   MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +R+   + P+  LS  +S  DKV GL  GADDY++KPF+  ELVAR+ A +R
Sbjct: 61  DGYEVARQIRIKH-NMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S++ T  +++NLD + V V G +I LT KE+ ++ LL+       +
Sbjct: 120 RFLTLNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++ G        + V I  LRKK+         I+TVWG GY  
Sbjct: 180 VEHIFQQVWTGDYYDGGSTVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTF 230


>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
 gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
          Length = 226

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   ++  L+   + + +   GE+G  L     +DAI+LDLGL +I G 
Sbjct: 1   MRVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V   G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I T+ G GY L + +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYSLDDPS 220


>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
           19977]
 gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
          Length = 225

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F   V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVARIRA +RR+  
Sbjct: 64  VCRVLRSDSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+    + +++ A  V  +G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DDK +   I + L++E +NV V   G++G+E+    +   +ILD+ L    G ++
Sbjct: 6   ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R + I  P+ ++S  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RRS   
Sbjct: 66  CRKIRESYI-IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFYM 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 + H +++I    LS+N +  TV + G+ + LT  EY+++ LL+       + E 
Sbjct: 125 NTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVEK 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++  +       + V I ++R+KL +       I+T+WG GY + 
Sbjct: 185 IFESVWKQKFYESNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGYKIE 233


>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ykoG
 gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
 gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 228

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  ++L L+ E ++V +   G +G++      +  ++LD+ L  + G E
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++  
Sbjct: 65  VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  L+ +
Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  +RKKL +    K  I T+ G GY ++
Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227


>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
 gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
           luxR-family) [Mycobacterium bovis BCG str. Pasteur
           1173P2]
          Length = 227

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrosococcus oceani ATCC 19707]
 gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
 gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus oceani AFC27]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L  E +       GE   +       D I+LD  L  I G ++
Sbjct: 5   ILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGISGVDL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   PV +L+     EDKVRGL  GADDYI+KPF+  EL+ARI+A++RRS 
Sbjct: 65  ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRRSA 124

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   +I    L ++  +  + V+G  + +   E++++           ++   +++++
Sbjct: 125 PLASGEVIEFDGLKLDPGSHRLSVRGTPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G   +I+TV G GY  
Sbjct: 185 GDNVYVEERTVDVHIRRLRKSLEP-SGHDGFIQTVRGVGYRF 225


>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 224

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 61  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
 gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
           S4-120]
          Length = 238

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREFK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 227

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +   L+S  F       G + +   +      IILDL L  + GFEV
Sbjct: 6   ILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLMLPGLDGFEV 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+      D++ GL+ GADDY+ KPF+  EL+ R+RA+++R  
Sbjct: 66  CKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKRHA 125

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++    LSV+L A  V + G  + LT  E++++  L       LT++  LN +
Sbjct: 126 PETEKRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLNSV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL         IETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHVRRLRQKLG---ACSRMIETVRGVGYRFKE 227


>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           RIL+++D+  +   +   LK + +     D G+  + L       D IILD+ L +  GF
Sbjct: 5   RILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPEYDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V R +R  K   P+ +L+      D+V GL  GAD+YISKPF+   L+AR+ A++RR  
Sbjct: 65  TVCREIR-KKSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRAN 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + L     L+++  A  V + G  + L+ KEY+++  LS      L++E  L+ +
Sbjct: 124 SEDKGKELKDFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +++ +D  I +LR KL   +   +YI+TV G GY   E
Sbjct: 184 WGYDYYGDLRTVDTHINRLRIKLDRKS---DYIQTVRGYGYRFEE 225


>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 224

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A   +  L+  +F V + + G+ G+E     EFD IILDL L  + GFE
Sbjct: 3   RILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  VCKHIREKK-DVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    L ++  A+ V V       T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RKIWNMDSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRFK 228


>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  274 bits (703), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
 gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC341]
 gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. RC586]
          Length = 229

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ ++  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  LIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L +A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEDA-GHDKLIQTVRGAGYRFSTKA 229


>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
 gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
          Length = 229

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 222

 Score =  274 bits (702), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   L+ E F V V   G +G+ +    E+D +I+D  L  + G 
Sbjct: 1   MRILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLPGLSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R  R      PV  L+    ++D + GL+SGA+DY+ KPF  EEL+ARIR  + R  
Sbjct: 61  EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQL-RLS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G + +NL A  V   G  + LT KE+ ++E L   + +  T+   + H++D
Sbjct: 120 GSETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV++  LRKKL + AG    IETV G GYV+R
Sbjct: 180 IHFDADTSVIDVYVNFLRKKL-DGAGCGALIETVRGVGYVIR 220


>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 226

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 225

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 130/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ +A   K  I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDAFSVK-LIHTVRGVGYVLEP 221


>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
           winged helix family [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 238

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  +   L+   + V     G   ++L    ++D ++LD  L D+ G 
Sbjct: 1   MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K   PV ILS   +++D+V+GL+ GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   DL+++   + V      I L  KE+ ++E +   K   L++ M + H++D
Sbjct: 121 PTPE-RLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    I+DV+I  LR K+ +    +  I+TV G GY++   A D+  +
Sbjct: 180 MDYDGLTNIVDVYIRHLRSKI-DDRFQQKLIQTVRGIGYMIE--APDKPAD 227


>gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED+KA+A      L+S  F V +   G+ G++      +D IILD+ L  + G
Sbjct: 1   MKSILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVMLPKLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ R +R  K + PV +++      DK+RGL  GADDY++KPF+  ELVAR++A + R 
Sbjct: 61  FEICRQIRQTK-NVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY 119

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 RG +   I    L +++ ++ V +      LT KEY ++ LL+   N    KE 
Sbjct: 120 ERLTAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   + V I +LR+K+ +      YIET+WG GY  +
Sbjct: 180 LFERIWGLDSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGYRFK 228


>gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
 gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ ++  +E  L  E F V     G +  E  +  EFD ++LDL +  + G 
Sbjct: 1   MRILLVEDDREISEMLEEFLIQEAFEVVPAFDGLEACEKFEDGEFDLVLLDLMIPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V++ +R   +  P+ I+S   S+ DK  GL+ GADDYI+KPF   E++ARI+A +RR+ 
Sbjct: 61  DVMKTIREKSV-VPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTN 119

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +    + +  GD+ +N    TV  +G +I LT KE++++ LL        TK
Sbjct: 120 QYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTK 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   + +++     +   ++V I +LR K+ + A    YI TVWG GY +
Sbjct: 180 EQIYSLVWEDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGYRI 229


>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 224

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
 gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
 gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
 gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
 gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
 gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
 gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
 gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
 gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MZO-2]
 gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
 gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
 gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
 gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae 12129(1)]
 gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae bv. albensis VL426]
 gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TM 11079-80]
 gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC9]
 gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae TMA 21]
 gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae B33]
 gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae BX 330286]
 gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MJ-1236]
 gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
 gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholera CIRS 101]
 gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
 gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
 gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           mimicus MB-451]
 gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae RC27]
 gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae INDRE 91/1]
 gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
 gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           cholerae MAK 757]
 gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio cholerae LMA3894-4]
          Length = 229

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ ++  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L +A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEDA-GHDKLIQTVRGAGYRFSTKA 229


>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri 4343-70]
          Length = 229

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +   +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDK 125

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I  G + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 VGAAGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 242

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ +  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 75  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E    
Sbjct: 134 SGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYE 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+T+WG GY + ++
Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
 gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. WCH70]
          Length = 232

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IEDD  +   I+L +    ++      GE+G+EL      D IILD+ L  + G+
Sbjct: 5   IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV + +R+     P+ +L+G     D ++GL  GADDYI KPF+  EL+AR++ ++RR+ 
Sbjct: 65  EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +   ++ +++    V +    + +  KE ++   L++     LT++  L+ +
Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + +DV I ++R KL+     K  I T+ G GY   EN+
Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEH-KAKWSIVTIRGVGYRFEENS 230


>gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
 gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii
           RW1]
          Length = 233

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 146/227 (64%), Positives = 185/227 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +A ++ELML +E FNVY TDLGE+G++L K Y++D I LDL L D+ GF
Sbjct: 1   MRVLLIEDDNTVASALELMLSAEGFNVYSTDLGEEGLDLGKSYDYDLICLDLNLPDMHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+ ++ TPV ILSG+S ++ KVR    GAD+Y++KPF+K ELVARI A+VRRS+
Sbjct: 61  DVLKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I  G ++VNLD K  EV G RIHLTGKEY M+ELL+LR+ +TLTKEMFLNHLY 
Sbjct: 121 GHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL+ A GG+NYIETVWGRGY+LR   ++
Sbjct: 181 GIDEPELKIIDVFICKLRKKLTLACGGENYIETVWGRGYMLRAPGEE 227


>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
           resistens DSM 45100]
          Length = 230

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +LK E F V++   G   ++     + D ++LDL L  + G EV
Sbjct: 4   VLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CRQLRQTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGET 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    + ++++   V V G  + +  KE+ ++E L       LT+   +
Sbjct: 123 EHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + K +DV I +LR K+         + TV G GY   
Sbjct: 183 DRVWGVDYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGYKFE 229


>gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
 gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus
           HTCC2516]
          Length = 238

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 153/227 (67%), Positives = 182/227 (80%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLNLPDMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ +L+G    E K+R    GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG + VNLDAKTVEV G  +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           G DEPE+KIIDVFICKLRKKL+ A  G+NYIETVWGRGYVLR+   +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATDGENYIETVWGRGYVLRDPEPE 227


>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A  IEL L++E +   V   G  G+   +    + +ILDL L  + G EV
Sbjct: 6   VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ IL+   ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 66  ARRIRKTS-NVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++ G 
Sbjct: 125 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWPG- 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 184 YQGGSNVVDVYIGYLRKKLE-AGGERRLIHTVRGVGYVLRED 224


>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
 gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
          Length = 242

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 233

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  ++  +   L+ E + V +   G  G+   +    D ++LDL L  +PG E
Sbjct: 7   HILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLPKLPGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V RALR+     PV +L+ +    D++ GL  GADDY+SKPF+  ELV R+ A++RR   
Sbjct: 67  VCRALRIES-EVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVR 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       +  G+L ++  ++   ++G +++LT +E+ ++E L        ++   L 
Sbjct: 126 TEAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++D     +   + V + +LR+K+ +A      + TVWG GY     +
Sbjct: 186 RVWDWTF-GDQSTVTVHVRRLREKIEDAPAQPKRLVTVWGVGYRFEATS 233


>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
 gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 228

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +E  L+ E F +     G++ ++  K      ++LD  L ++ G +V
Sbjct: 5   LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMSGIDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR       + +++  +   DK+ GL+ GADDYI+KPF+  EL ARIR+++RR  G 
Sbjct: 65  CRELRKTS-HVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEGQ 123

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+  GDL+++     V  +G  I LT  E++++  L+ +     ++   L  +++
Sbjct: 124 DNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIFE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +      YI+TV+G GY   E 
Sbjct: 184 DDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRFGEQ 227


>gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 228

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G +G+ L     +D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R  K  TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GILAAVRANK-DTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++    DL ++L  + V   G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 SQEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +IDV + +LR KL +       + TV G GYVL    +
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPFEAKLLHTVRGMGYVLESRPE 224


>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 230

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ LK+E + V     G + ++L +  + D IILD+ +  + G + 
Sbjct: 6   ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGIDA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    +TP+ +LS      DK+ GL  GADDY++KPFN  EL+AR++A +RR    
Sbjct: 66  CIKIREQ-YNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTKL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   +  ++    L++NL+   V   G  I+LT  E  +++LL + K      E     
Sbjct: 125 NTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I KLR+K+       +YI TVWG GY   E
Sbjct: 185 VWGQEYFDNNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKFGE 230


>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 224

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   + L L+   +       G + I   +   +D I+LD+ + +  G+E
Sbjct: 3   KLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+  +   D V+GL+ GADDYISKPF+++EL+ARI A++RRS  
Sbjct: 63  VCRQIRKMS-QVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSNQ 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +    I    L  +  +  V  Q   + +T KE+ M+ L     N   ++E  L  ++  
Sbjct: 122 NQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLR 222
             E E + ID  I  +R KL NA    + +++TVWG GY   
Sbjct: 182 EVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGYKWV 223


>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
 gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
           200]
 gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
           4222]
          Length = 229

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           CMR15]
          Length = 228

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +V+++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +       I+TV G GYVL + 
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-HPKLIQTVRGMGYVLEDP 224


>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
 gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
          Length = 226

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K L   +E +L  E + V + D G  G+EL +   +D +ILD  L    G 
Sbjct: 1   MKILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR    +TPV  L+   +I+D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S + + DL ++ + +     G  I L+ KE Q++ L        LT E    H
Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+   ++P   ++   +  LR+K+  AAG    I TV+G+GY   EN
Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIE-AAGETPLINTVYGKGYRFGEN 226


>gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   IE+ LK+E F +     G + +E+ +  E   IILD+ + ++ G +
Sbjct: 5   KILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIMMPEMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K + P+ +LS  +   DK+ GL +GADDY++KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-NMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I   DL +N+    V++ G  I LT +E+ ++ELL+  +    + E  
Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++          + V + K+R+K+        YI+TVWG GY + 
Sbjct: 184 YQKVWKEDFFDSPNTVMVHVRKIREKIEKDPRNPQYIKTVWGVGYKIE 231


>gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus]
          Length = 231

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL LK+EN+ V+     ++ +E     + D  ILD+ L    G  
Sbjct: 4   KILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGASGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +L+   +  DK+ GL  GADDYI+K F   EL+AR++A +RR + 
Sbjct: 64  ICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++IV   L +N++     +   ++ LT  E+ ++ +L   K   ++ E   
Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+++      YI+TVWG GY + +
Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231


>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 224

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L   +   L+ E ++V     GE+ +   +  E+D +ILD+ +  + G 
Sbjct: 1   MRILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV +L+   SI+D+V+GL +GADDY+ KPF  +EL+ARIR ++R+  
Sbjct: 61  EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +  +   V      IHL+ KE+ ++  +       L++E    H+++
Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                E  +IDV+I  LRKK+      K  + T+ G GYVL+ + 
Sbjct: 181 YDYSGESNVIDVYIRYLRKKIDEGHSHK-LLHTIRGVGYVLKVDV 224


>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
 gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
          Length = 229

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
 gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 230

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L  E +NV     G  G+EL +   FD I+LD+ L  + G EV
Sbjct: 9   ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R    + P+ +L+   S+ DKV GL SGA+DYI+KPF  EEL+ARIR  +R +   
Sbjct: 69  LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++    L ++ D +TV ++G  + LT +E+ ++  L   K   L++E  L +++  
Sbjct: 128 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +DV+I  LR K+        +I TV G GYV++++
Sbjct: 188 DFAGDTNAVDVYIRFLRGKIDEVF-NLKFIHTVRGVGYVIKDD 229


>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 235

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 4/230 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I   L++  + V V + GE  ++ C+    D IILD+ L  I G EV
Sbjct: 6   ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLEV 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR   A    P+ +L+      DKV GL+ GADDYI+KPF   EL+AR++A++RR+ 
Sbjct: 66  CKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRRTE 125

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     +I  G L+++     V   G+++  T KE+++++LL L +   L+++  L+ +
Sbjct: 126 NNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +      E + +DV I  +R+KL +      YIET+ G GY    + + E
Sbjct: 186 WGYEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGYKFIASEEGE 235


>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
 gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
          Length = 232

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
 gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 225

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  AVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 223

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + I++ L    F V     G+ G+E  +   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A R      PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I    +  + + + V +    I LT +EY+++EL  L K   LT++   + LY+
Sbjct: 121 GHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +E     ++V I  LR+KL     GK +I TV G GY L +N + E
Sbjct: 181 WDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDETE 223


>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 234

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 133/230 (57%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  +   +   L++  + V  ++ G++G++     + D +ILDL L D+ G E
Sbjct: 4   RVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVDGLE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR+
Sbjct: 64  ICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRT 123

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +   +    +I  GD+ ++     V  +G  + LT KE+++++LLS      LT++  L+
Sbjct: 124 QQPEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++      E + +DV I  LRKK+ +      YIETV G GY L++  +
Sbjct: 184 KVWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLKDKGE 233


>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 231

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  I L LK+ENF       G+D +      + D  ILD+ L DI GF 
Sbjct: 4   KILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R    + PV +L+  +   DK+ GL  GADDYI KPFN  EL+AR++A +RR   
Sbjct: 64  ILQKIRET-YTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       + +I  G L +N            + LT  E+ ++ +L   +   ++ E   
Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182

Query: 176 NHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  +   +    + V I  LR+K+    G   +I+TVWG GY + +
Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGYKVEK 231


>gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 225

 Score =  274 bits (702), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
 gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  + F V     GE+ I++  +  +   I+LD+ +  + G+
Sbjct: 5   KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      P+ +L+     +D+++G + G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  EVLKTIR-KYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSS 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ +I  G + ++  A  VE+ G  + L+ KE++++   +  +   L++E  LN++++
Sbjct: 124 PGAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR KL        YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFE 222


>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 228

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   I++ LKS  FN  +   G++   L   Y  D ++LD+ +  + G +
Sbjct: 7   KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ +R      PV +++      DKV  L+ GADDYI KPF  +EL+AR++A++RR   
Sbjct: 67  VLKWIRKQGER-PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSV 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DL ++  +  V   G  I +  KE++++  L+  KN   T+E  L  ++
Sbjct: 126 DNDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +DV + +LR+KLS   G +  IETVWG GY   
Sbjct: 186 GYDYPGDSRTVDVHVKRLREKLS--GGEQWQIETVWGVGYKFE 226


>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 249

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 20  ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 80  CRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 139

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 140 EPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQRL 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                    + +DV I KLR+K  + AG    I+TVWG+GY+   +  +
Sbjct: 200 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRSEWE 248


>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 226

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
 gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +   + L L+ + F V   + G   + L + +  D  ILD+ +  + GFE+
Sbjct: 5   ILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMNGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR      P+ ILS  S   DK+ GL  GADDYI+KPFN  E+VAR++A +RR+  +
Sbjct: 65  TRALR-KYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAARN 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +  +I   +LS++  A  +   G  I LT  EY+++ LL        TK           
Sbjct: 124 SSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIGNY 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E +   + V I KLR+K+ +      YI TV G GY L +
Sbjct: 184 FEGDDNTMMVHISKLREKIEDDPRNPRYIITVRGLGYKLEK 224


>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 229

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ALA  ++  L  E + V V   G +G+   +    D IILD  L  + G E
Sbjct: 9   QILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLSGIE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +    P+ +L+    + D+V GL SGA+DYI KPF+ EE +AR+R  +R  + 
Sbjct: 69  ICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQE 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   DLS++   + V      I LT KEY ++E L       LT+   L  ++  
Sbjct: 129 PNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWGY 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V++  LR KL +  G    I+TV   GYVLRE
Sbjct: 189 DFMGDSNIIEVYVRYLRIKLESE-GESRLIQTVRSVGYVLRE 229


>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
 gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
           27755]
          Length = 260

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL LK++ +NV     G++ ++     + D  ILD+ L D+ GF
Sbjct: 32  MNILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVDGF 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 92  QILKQIRE-KYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYT 150

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +       +I  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 151 QYNEGTKDEGDVIDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEEL 210

Query: 175 LNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + ++     +     + V I  LR+K++   G  ++I+TVWG GY + E
Sbjct: 211 FHKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260


>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 234

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + V+  +  ++G+E+    E   ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIMMPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCRKIRETN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A++ I    LS+N D   V V G  I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIEK 234


>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 256

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  ++  I++ LK + F+V   D G+  +E+ + Y  DA ILD+ +  + GF 
Sbjct: 31  KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 91  LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SLI   D++++ D   V   G  + L+  E+Q++  L +     L+K   L+H+
Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     +  +++ ++  LR+K+         I TV G GYVLR+ 
Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKI--DTKEPRLIHTVRGVGYVLRKP 254


>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 224

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 223

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVAGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VFI +LRKK+ N       IETV G GY ++   
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220


>gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis
           z3032]
 gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter
           turicensis z3032]
          Length = 234

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 9   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 69  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 189 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 230


>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 234

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 132/229 (57%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L++  + V  ++ G++G++     + D +ILDL L D+ G E+
Sbjct: 5   VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR++
Sbjct: 65  CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +    +I  GD+ ++     V  +G  + LT KE+++++LLS      LT++  L+ 
Sbjct: 125 QPEEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      E + +DV I  LRKK+ +      YIETV G GY L++  +
Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLKDKGE 233


>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 229

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  +++      D ++LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADD+I+KPF+ +ELVARI+A++RR+
Sbjct: 64  LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTCLEDPIDVQGLQLDPVSHRVTVGEQVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAV-TLSGHDRLIQTVRGAGYRF 225


>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium marinum M]
 gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
          Length = 232

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    + V +   G + +E+      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++ 
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DLS++   + V     RI LT  E+ ++E+L       LT+   L 
Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232


>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+  LA  +EL L  E F+V+V   G +G+EL     +D I+LD+ L  + G E
Sbjct: 4   RILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK STP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAAK-STPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++   DL V++ A+TV+     I LT +EY ++       N  LT+++ L  ++ 
Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E  ++DV++  LR+KL        YI+TV G GYV+R 
Sbjct: 183 FDTEVETNVVDVYVRYLRQKLDEHNKE-RYIQTVRGAGYVMRP 224


>gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 225

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L+   F++ +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 239

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  + L L+ E + V  +  G +G+ L +   +DA+ILDL L  + G E
Sbjct: 6   RILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+        +    LS++  A+   V G RI LT +E+ ++   +       ++   L
Sbjct: 126 LARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWGRGY L
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231


>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
 gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
           ulcerans Agy99]
 gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
           marinum M]
          Length = 227

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226


>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
 gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 232

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+  +      ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|291062157|gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp.
           AO22]
          Length = 230

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR A    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ + A     I TV G GY L  +A D+
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDD 226


>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 231

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + +++ +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 232

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 129/229 (56%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E+F V     GE G+EL    ++D  ++D  L  + G 
Sbjct: 1   MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A  + PV  L+   +++D V GL +GADDY+ KPF  EEL+ARIRA +R++ 
Sbjct: 61  EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L ++ +        H + LT KE+ ++E L    +   T+   + H++D
Sbjct: 121 PTTGP-LTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDE 228
              + +  +IDV++  LR+KL  AAG    I+TV G GYV+R   A +E
Sbjct: 180 IHFDADTSVIDVYVNFLRRKLE-AAGCTGLIKTVRGVGYVIRTPEANNE 227


>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
 gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
          Length = 238

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   +++ L+ E + V   + G   +++    ++  I+LDL + +  G  V
Sbjct: 7   VLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPEKDGVAV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K+ TP+ +L+      ++V G ++GADDYI KPF+  E+V R++AI+RRS  +
Sbjct: 67  ATELRETKM-TPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSAAY 125

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          L+V   L+++ DA  V   G  ++LT KEY+++  L+   +    +E  
Sbjct: 126 SPISNSTASKDLVVFPHLTIDHDAHRVTADGVEVNLTPKEYELLYFLAKAPDKVFDREHL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY   
Sbjct: 186 LKEVWHYDFFGDLRTVDTHVKRLREKLNRVSESAAKMIVTVWGVGYKFE 234


>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
 gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
           F6-596]
          Length = 238

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  +++     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREFK-ATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 NSEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY      +
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEVPEE 238


>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 229

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +++   F     +  +  I L K    D I+LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+     EDKV+GL+ GADDYI+KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++           ++E  L+++
Sbjct: 124 APTRLEETIDVQGLLLDPVSHRVSVGETVLDMGPTEFRLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAVEE-SGHDRLIQTVRGAGYRF 225


>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 226

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +EL L  E + V     G  G+EL +   FD I+LD+ L  + G EV
Sbjct: 5   ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLNGTEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R    + P+ +L+   S+ DKV GL SGA+DYI+KPF  EEL+ARIR  +R +   
Sbjct: 65  LRRIRRTS-AVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAPL 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++    L ++ D +TV ++G  + LT +E+ ++  L   K   L++E  L +++  
Sbjct: 124 SSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWGF 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   +DV+I  LR K+        +I TV G GYV++++
Sbjct: 184 DFAGDTNAVDVYIRFLRGKIDEVF-NVKFIHTVRGVGYVIKDD 225


>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 246

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 121/238 (50%), Gaps = 11/238 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D + + + Y  D I+LD+ +  + G  
Sbjct: 10  RILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R    +TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 70  AARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +            ++   DL ++L  + V     R+ LT  E+ ++E+        LT+
Sbjct: 130 ASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 189

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           E  L  ++    EP    +DV++  LR+K + A G    + TV G GY LR     E 
Sbjct: 190 EQILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYALRTGGGGEA 246


>gi|160895900|ref|YP_001561482.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160361484|gb|ABX33097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 230

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR A    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ + A     I TV G GY L  +A D+
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGYTL--DAPDD 226


>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
 gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
          Length = 228

 Score =  274 bits (702), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD AL+  I ++L SE+F       G    E+ +  + D I+LDL L  + G +
Sbjct: 4   RILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLMLPGMDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      PV +L+  S   D VRGL++GADDY+ KPF   ELVAR++A +R    
Sbjct: 64  VCQQIRAES-DVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMDR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+ +++   TV   G  I LT  E+ ++  L+   +   +++  L  ++  
Sbjct: 123 GVTQEITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               + ++++V + +LR K+         + TV G GY 
Sbjct: 183 PHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGYK 221


>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 129/231 (55%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L +   +DAI+LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R      PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V G ++ LT  E++++  L       +++   + HLYD
Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDET 229
              + +   I+VF+ +LRKKL         I+TV G GY+L   E  + ET
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDV-----EVIQTVRGLGYLLVPPEAPRQET 226


>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 228

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   +   L+ E +       G++G+EL +  + D I+LDL L  + G  V
Sbjct: 8   ILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLPKMDGLAV 67

Query: 63  LRAL-RVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L R +  +  P+ +L+      D++ G + GADDY+ KPFN  EL+ RIRAI+RR  
Sbjct: 68  CRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRRQV 127

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++    +SV+  A  V V G  + LT  E+++IE L        T+E  L  ++
Sbjct: 128 MVESNPVLTRHGVSVDPAAHKVTVLGQDVELTATEFRLIEDLLRNAGRVRTREELLAAVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + E   + +D  I +LR KL +AA     IETV G GY  +E
Sbjct: 188 GYQFEGYARTVDTHIRRLRNKLGDAA---EIIETVRGVGYRCKE 228


>gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 225

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+        I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219


>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 242

 Score =  274 bits (701), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F  +    G   +E+ +  + D ++LDL L  I G E
Sbjct: 22  RILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGIDGIE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV +L+  +   D VRGL+SG DDY+ KPF   ELVAR+RA +R    
Sbjct: 82  VCRLIRAES-DVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   D+++++    V     RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWGY 200

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 201 RHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGYK 239


>gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory
           system with PhoQ [Methylobacterium extorquens DM4]
 gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           DM4]
          Length = 225

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+        I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 132/230 (57%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+  A+++  +L ++N+ V V   G    EL + Y++D I+LD+ L  + G 
Sbjct: 1   MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R +    P+ +L+G  S  +K  GL +GADDY+ KPF++EELVAR+RA++RR  
Sbjct: 61  SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ ++  G+L ++  +  V    + + LT KEY ++EL         +  M L H++ 
Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             D P  + +   I  LR KL NA    + +ETV+G GY L+   +++  
Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEEEQGS 230



 Score =  100 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L ++DD  +   ++ +L      V   D      E  +    D +ILD+ +    G E
Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+  L+     E   +    GADD++SKP    ELV RI   + R 
Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLERV 501

Query: 120 R 120
           +
Sbjct: 502 K 502



 Score = 78.8 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 3    ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
            +L+ +DD  +   ++ +L+   + V     G++ I        D I+LDL +  + G+E 
Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440

Query: 63   LRALRVAKIS--TPVCILS 79
            +  L+ +  +   P+ I S
Sbjct: 1441 MAMLKESTETKHIPIVICS 1459



 Score = 57.2 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 2    RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            RIL++EDD  LA     + +  +   +    G + I L +    D +ILDL L +  GF 
Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561

Query: 62   VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRR 118
            V+  L+  +   + PV + S     E + + L+ G  ++++K     +E   R+  +++R
Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1621


>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 243

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S I +        + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 230

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+A+A      L++ ++ V + + GE G++     +F  I+LD+ L    GF+
Sbjct: 3   RILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115
           V R LR +K + P+ ++S      DK+RGL  GA+DYI KPFN  EL+AR+++       
Sbjct: 63  VCRNLRASK-NVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +     ++L+   +L ++L++  V + G  + L  KE++++  L+   N   +K+   
Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E+  + V I ++R+K+   +    +IETVWG GY  R+
Sbjct: 182 EKIWGLDAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRFRK 229


>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLGSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
 gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
 gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
           H10407]
          Length = 240

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G   + L +   +DA++LDL L ++ G E
Sbjct: 6   KILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPNVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   ++ GL+ GADDY+ KPF+ +EL+AR++A+ RR   
Sbjct: 66  ICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L ++  A+ V + G  I LT +E+ ++   +       ++   L
Sbjct: 126 MGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+ + A     I TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGYKF 231


>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   +   L+ E ++V     G++ +E+        IILDL L D+ G EV
Sbjct: 4   ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLSGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +L+  S   D++RGL  GADDY+ KPF+  ELVAR+RA++RR+  +
Sbjct: 64  CVQIRKES-RVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGDY 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +     +  GDL+++++ K V   G  + +T  EY+++  L      T  +E  +  +  
Sbjct: 123 STLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVMG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E   + ID  I  LR+K+        YI+TV+G GY   + 
Sbjct: 183 FDFEGYDRTIDTHIKNLRQKIEADPKQPEYIKTVYGLGYRFDDP 226


>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
 gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
           20544]
          Length = 233

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A   +  L +  F V     G  G+ + +  ++D I+LD+ L  + GF 
Sbjct: 3   KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR  K   PV +++      D +RGL  GADDYI KPFN  ELVAR+R+ + R   
Sbjct: 63  VCRELRRYK-EVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q ++ +G L + LDA  V +    +  T +E++++  L+   N   ++E   
Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I ++R+K+        Y+ET+ G GY  R
Sbjct: 182 ERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228


>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
          Length = 241

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+I+D+  +   ++  L+   F V     GE+G+ L +    D I+LD+ L DI GF+
Sbjct: 11  HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+   +  D V GL  G DDY++KPF+ E L+AR+RA++RR + 
Sbjct: 71  VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++   DL ++    TV   G  I L+  E++++  +       LT+   L
Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +++      + +I++ ++  LR+KL     G N I T  G GY LR    D
Sbjct: 191 ENVWGWDYAGQSQIVETYVSYLRRKL--DPFGPNLIHTQRGVGYALRVKEDD 240


>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SSMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + +ILDL L  + G EV
Sbjct: 17  ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ IL+   ++ DKV GL +GADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 77  ARRIRKTS-NIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 135

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++ G 
Sbjct: 136 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVWPG- 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL  A G +  I TV G GYVLRE+
Sbjct: 195 YQGGSNVVDVYIGYLRKKLE-AEGERRLIHTVRGVGYVLRED 235


>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 236

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 235

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   +++ LK + F+V V   G   ++  + +  D ++LD+ +  + G  
Sbjct: 11  RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ LR   I  P   L+   S+EDKV GL  G DDY++KPF+ EE+VARI  ++RRS  
Sbjct: 71  LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSGF 130

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    + +   DL ++ +   V   G  + L+  E+ ++    +     L+K   L+H+
Sbjct: 131 GQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDHV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +V +++ ++  LR+K+    G    I T+ G GYVLRE 
Sbjct: 191 WHYDFGGDVNVVESYVSYLRRKV--DTGEPRLIHTLRGVGYVLREP 234


>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
 gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 235

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 155/231 (67%), Positives = 189/231 (81%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+   A +I+ ML +E FNVY TDLGE+G++L K Y++D I+LDL L D+ G+
Sbjct: 1   MRVLLIEDEPTTAKAIDTMLTTEGFNVYTTDLGEEGLDLGKLYDYDIILLDLNLPDMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR AK+ TPV ILSG+S ++ KVR    GADDY++KPF+++ELVARI A+VRRS+
Sbjct: 61  DVLKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG L+VNLD KTVEV   R+HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           G DEPE+KIIDVFICKLRKKL+ A GG NYIETVWGRGYVLR +  DE  E
Sbjct: 181 GMDEPELKIIDVFICKLRKKLALACGGDNYIETVWGRGYVLR-DIDDEGNE 230


>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 230

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   ++   + E F   +   G + I++   Y    ++LD+ +    GFEV
Sbjct: 5   ILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVMMPKKDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +++      D++ GL  GADDYI KPF+  E++ARIRAI+RR    
Sbjct: 65  CREIRQ-KSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDNS 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +          L +N+    V+V G  ++LT KE +++ LL+       +++  L+ ++
Sbjct: 124 NEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I +LR K+  +      I+T+WG GY   
Sbjct: 184 GYEYFGDARTVDTHIKRLRAKIDISDKISWDIKTIWGVGYKFE 226


>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 228

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ +DD +L   +  +L SE + V     G + ++      FD +ILD+ +  I G 
Sbjct: 2   MRVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPHIDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R   I+ PV +L+    +EDKV+GL  GADDY++KPF+ +EL+AR+RA++RRS 
Sbjct: 62  SLLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSE 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++    L ++  ++ V   G  I LT KE+ ++E L   KN  +++     H++ 
Sbjct: 122 GRHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWG 181

Query: 181 GRDEPEV--KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +P      IDV I  LR+KL +A G    I+TV   GY++ +  +
Sbjct: 182 DAFDPFTMSNFIDVHIKNLRRKLGDA-GNDKIIQTVRSVGYMIEDGEQ 228


>gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2]
 gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2]
          Length = 240

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    GE+GI +CK  + D IILD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGEEGIRMCKQVQPDLIILDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR++
Sbjct: 72  SVCQQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ I+   GD++++    TV      + LT KE+ ++  L    N   +K      +
Sbjct: 131 YQEKARIMYQFGDITIDDAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V I  LR+K+ +     +Y+ TV G GY L
Sbjct: 191 WGETYLGNDNIMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKL 233


>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
 gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
 gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
 gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
 gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
 gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
 gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
 gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
 gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
 gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
 gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
 gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
 gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
 gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
 gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
 gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
 gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
 gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
 gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
 gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Escherichia coli O157:H7 str. EDL933]
 gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
 gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
           [Escherichia coli str. K-12 substr. MG1655]
 gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
           O157:H7 str. Sakai]
 gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
 gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
 gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K12 substr.
           W3110]
 gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
           UTI89]
 gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
           O1]
 gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli HS]
 gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E24377A]
 gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia albertii TW07627]
 gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli SMS-3-5]
 gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii CDC 3083-94]
 gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4196]
 gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4113]
 gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 53638]
 gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4076]
 gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4401]
 gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4486]
 gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC869]
 gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC508]
 gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B7A]
 gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli F11]
 gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E22]
 gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E110019]
 gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B171]
 gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1012]
 gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 101-1]
 gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4206]
 gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4045]
 gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4042]
 gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. EC4115]
 gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
 gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
 gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
 gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli O157:H7 str. TW14588]
 gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli 55989]
 gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI1]
 gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli S88]
 gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli IAI39]
 gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli ED1a]
 gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli UMN026]
 gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
           coli LF82]
 gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
 gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BW2952]
 gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
 gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli B str. REL606]
 gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli BL21(DE3)]
 gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
           11368]
 gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
           12009]
 gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
           11128]
 gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli DH1]
 gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
 gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
           [Escherichia coli 042]
 gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
           O55:H7 str. CB9615]
 gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B088]
 gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli FVEC1412]
 gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B185]
 gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli B354]
 gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli IHE3034]
 gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
 gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 196-1]
 gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 185-1]
 gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 200-1]
 gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 175-1]
 gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 198-1]
 gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 69-1]
 gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 84-1]
 gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 45-1]
 gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 115-1]
 gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 182-1]
 gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 116-1]
 gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 21-1]
 gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 187-1]
 gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 119-7]
 gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 124-1]
 gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 78-1]
 gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 146-1]
 gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
 gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
           83972]
 gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
 gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 145-7]
 gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
           [Escherichia coli ETEC H10407]
 gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1827-70]
 gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 2362-75]
 gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia coli W]
 gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
 gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 85-1]
 gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 153-1]
 gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 3431]
 gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
 gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
 gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
 gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
 gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
           493-89]
 gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
           2687]
 gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli EPECa14]
 gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E128010]
 gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           sonnei 53G]
 gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli LT-68]
 gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1180]
 gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli RN587/1]
 gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
           [Escherichia coli KO11]
 gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1520]
 gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E482]
 gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H120]
 gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H252]
 gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H489]
 gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M863]
 gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA007]
 gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TW10509]
 gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 57-2]
 gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 60-1]
 gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 117-3]
 gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli E1167]
 gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
 gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
 gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli STEC_7v]
 gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Escherichia coli AA86]
 gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H736]
 gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M605]
 gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli M718]
 gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA143]
 gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA271]
 gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA280]
 gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H591]
 gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H299]
 gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 155-74]
 gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 5216-82]
 gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           boydii 3594-74]
 gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
 gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 235

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + +++R  + + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A  +     L++N+      + G  + LT  E+ ++ +L  R+ + ++ E 
Sbjct: 124 YNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++           I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 224

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 129/223 (57%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V V + G+ G+E      +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  K   PV +++      DK+ G + GADDY+ KPF+ +E++AR++AI+ R+ 
Sbjct: 63  SLLKTIRE-KSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTY 121

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G ++         +S+N+  + V V G +I LT KE+ +++LL   K   +++E  LN +
Sbjct: 122 GASEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +++ +D  I +LR+KL      +  I+TVWG GY L
Sbjct: 182 WGYDFYGDLRTVDTHIKQLREKLGE---KRKLIKTVWGIGYKL 221


>gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As]
          Length = 242

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    F   V   G DG+ L     +D I+LD  L    G+
Sbjct: 18  MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + +TPV +L+    + D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 78  SVLSELRARQ-TTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V++  +  E  G R+ LT KE+ ++ LLS R    L++ +    ++D
Sbjct: 137 TRLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR KL         + TV G GYVL 
Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVLE 237


>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
 gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
           Tu4000]
          Length = 220

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  + V GDL V+  A+ V +    + LT KE+ ++E L LR    ++K   L H++D
Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++V+I  LR+KL         I TV G GY L 
Sbjct: 181 FAYEGDPNIVEVYISALRRKLRA-----RLIRTVRGAGYRLE 217


>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
 gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
          Length = 232

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L  S++  L+  +  V +   GED + +     +D +ILD+ L  + GF
Sbjct: 1   MRILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+ +  +E +V+GL  GADDY++KPF   EL AR+RA++RR  
Sbjct: 61  EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + +   D++++     V+     I L  KEY ++E      +  L++ M + H++D
Sbjct: 121 PVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G  E    +IDV+I  LR+KL       N I+T+ G GY L+E 
Sbjct: 181 GDTEHLSNVIDVYIRYLRRKL-CNENEPNVIQTIRGSGYQLKEP 223


>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 232

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
 gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu009]
 gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu011]
          Length = 240

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 239


>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 226

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ALA  I ++L+++ F       G   +        D ++LDL L  I G E
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 65  VCRLIRDES-DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R + + ++++V + +LR K+         + TV G GY 
Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYK 222


>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
 gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 224

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA  +   L    + V     G D   L     +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A+++ PV IL+   S  +KV G+ +GADDY+SKPF  EEL+ARIRA++RR+ 
Sbjct: 61  SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G + +N  A TV V G  + LT  E+++++ L       ++K     H+Y 
Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ +LR+KL         IETV G+GY LR   +
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----IIETVRGQGYRLRPPPE 221


>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 111/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F V +   G++G++L    ++  II+DL L  + G+E
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMNGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  K   P+ I+S  +   DK+R    GADDYI+KPF+  ELVAR +A + R   
Sbjct: 64  LCSHIRKNK-EVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S I    L ++  A+ V V+   +  T +E+ ++E L+   N    K   
Sbjct: 123 LLGKQSPSPSSEIHIRGLVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++      ++  + V + KLR+K+        YIETVWG GY  
Sbjct: 183 FERIWGMDSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGYRF 229


>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
 gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
          Length = 229

 Score =  274 bits (701), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A      L+   F V V + G+ G++     ++D +ILDL L    GF+
Sbjct: 3   KILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRDVK-NTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G     T KE+ ++  L+   N   +KE   
Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRFK 228


>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
 gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sagittula stellata E-37]
          Length = 229

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L++E F V     GE+ + +      D ++LD  L ++ G EV
Sbjct: 8   VLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIEV 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++      + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRAR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK LS   GG++ + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALSQH-GGQDLLRTVRGAGYAL 228


>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
 gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 248

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 15  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDGIA 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 75  ICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHSR 134

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 135 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   + ++
Sbjct: 195 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEEE 247


>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
 gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
           WAL-14163]
 gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
           WAL-14673]
          Length = 234

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + VY  D  + G+++ +      ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIMMPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCKKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A++ I    L +N D   V V G  I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPQSNVSSSAKNEISIKGLIINKDNHKVIVYGEEIKLTPIEFDILYLLASNPGRVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 241

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   ++V     G + + L    + D +ILD+ L D+ GF 
Sbjct: 11  RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + I  P+  L+    + DKV GLQ+G DDY++KPF  EE+VARI AI+RR++ 
Sbjct: 71  VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKR 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  Q L+   DL ++ +   V   G  I L+  E++++  L + +   ++K   L+H++
Sbjct: 131 SAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG----GKNYIETVWGRGYVLREN 224
           +   E +  I++ +I  LR+KL           + I+T  G GY+LR+ 
Sbjct: 191 EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRDP 239


>gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 235

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  +   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 236

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRTT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 234

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++ +  +  L+   + V     G +G+++    E D I+LDL L  + G E+
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  K    + +L+  S   D+V GL+ GADDY++KPF+  ELVAR+ AI+RR RG 
Sbjct: 65  TARLRE-KSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    + ++ DA+     G  + LT  E+ ++  L+   N  L++E  +  ++ 
Sbjct: 124 PVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++DV++ ++R+K+    G  N I T  G GY   +  
Sbjct: 184 ADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFVDTP 227


>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
 gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ ++  +   L  E F V     GE+ +++    +F+ I+LDL L  I G E
Sbjct: 4   KILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKIDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R   +  PV I+S      DK  GL  GADDYISKPF+  E++ARI+A +RR R 
Sbjct: 64  CLRMIRSKSM-VPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +        + +I  GDLSV+L   +V+    +I+LT KE+ +++L     +   TK   
Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +++     +  +I+V I +LR+K+ +      YI+T+WG GY L
Sbjct: 183 YKSVWEDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229


>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 239

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238


>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
 gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
          Length = 241

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSQ 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPTQQEEEVTFGEFTLNLATREMYHDEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 229

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  ++  +   L +ENF V     G+   E      +  ++LDL +  I G 
Sbjct: 1   MKILLIEDDIEISEMLCSYLIAENFEVVCATDGQKACEAFDIGFYSIVLLDLMIPKITGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R  K + P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR+ 
Sbjct: 61  NVMKYIRQ-KSTVPIIIISAKDSDSDKTLGLGLGADDYITKPFSITEVMARIKANIRRNT 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +A     Q+ +V G L +NL+  TV   G  I LT KE+ ++ LL        TK    
Sbjct: 120 EYAAVQPEQTKLVWGPLVMNLENHTVTKSGEIIELTAKEFDILRLLLENPQRVYTKAQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +++     +   ++V I +LR K+ +       + TVWG GY L E 
Sbjct: 180 SLIWNDAYMGDENAVNVHISRLRTKIEDDPRKPQVVITVWGIGYKLGEQ 228


>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 228

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L++E  +V     G + I+L    E D +ILD+ +  + G + 
Sbjct: 4   ILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    S P+ +LS      DK+ GL  GADDY++KPFN  EL+AR++A +RR    
Sbjct: 64  CMHIREQ-YSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQKML 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S+      I   +L +++    V ++G  + LT  E+ +++LL+       + +     
Sbjct: 123 TSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIYES 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  R       + V I  LR+KL        YI+TVWG GY +
Sbjct: 183 VWKERIGFSDNTVMVHIRNLREKLEINPRKPEYIKTVWGVGYKM 226


>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
 gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   ++  L+ E + V     G + +E      +   IILD+ +  + G
Sbjct: 14  IKILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPKMDG 73

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++  R +R +    P+ +L+      D+++G   G D+YISKPF+ + LVAR+ A++RRS
Sbjct: 74  WQTCREIRQSS-KVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRRS 132

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G + V+  A  V+V G  + L+ KE++++      +   L++E  LN++
Sbjct: 133 NVLDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSREKILNNV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     + + ID  + KLR KL        YI+T+WG GY    N
Sbjct: 193 WNYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFEVN 235


>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
           ATCC 9817]
          Length = 223

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 122/220 (55%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ + + + + L  E + V   + GE G++L     FD +ILD+ L    G+ 
Sbjct: 8   RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR ++     TPV +L+     ED+V G + GADDYI+KPFN + L+AR+++++R++  
Sbjct: 68  ILREIK-KYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S+I  GDL +N  + +V      I L  KEY ++  L       L++E  LN ++  
Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + ID  I  LRKK+   A     I+T+ G GY L
Sbjct: 187 DFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221


>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 261

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ +DD  +   I L  + +   +     G + +E+ +  + D +ILD+ +  + GF
Sbjct: 33  MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R +R  K  TP+ +L+      D+V GL+ GADDY++KPF+  E+VARIRAI+RR +
Sbjct: 93  EACREIR-KKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151

Query: 121 GHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +          V   L+++LD + V V G ++    KE+ ++  L     +  ++E 
Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++      +V+ IDV I K+R++L       + I+TVWG GY    ++
Sbjct: 212 LLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPY--DCIQTVWGIGYKFGVDS 261


>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 231

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 130/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E ++  V   G + + + +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K   LT+E+ L+ +
Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRVREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 227

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +EL L    +   V   G+DG+ +    + D ++LD+ + ++ GFEV
Sbjct: 5   ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELSGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +L+    + DKV GL  GA+DY++KPF  EEL+ARIR ++R +   
Sbjct: 64  LRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTTQA 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A   + +   D+ ++LD          + LT +E+ ++  L   K   LT+E  LN ++ 
Sbjct: 124 AVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  I+DV+I  LRKK+         I+TV G GYVLRE 
Sbjct: 184 YDYFGETNIVDVYIRYLRKKM--DRSQSPLIQTVRGIGYVLREE 225


>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 228

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  ++L L+ E +NV +   G +G+       +  ++LD+ L  + G E
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIR  +R++  
Sbjct: 65  VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNGT 124

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  LN +
Sbjct: 125 KTEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  +RKKL +    K  I TV G GY ++
Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTVRGVGYAIK 227


>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + LK E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G RI+LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWNERAYEINNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
 gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
 gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 243

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F V V + G+    +      + I+LDL +    G  
Sbjct: 10  KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G  + +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241


>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  + L L+ E + V     G +G+   +   +DA++LDL L  I G E
Sbjct: 6   RVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 66  ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +    ++++  A+T  V   R+ LT +E+ ++   +   +   ++   L
Sbjct: 126 LERNARIDAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++  + E     ++  I +LR K+         I TVWGRGY  
Sbjct: 186 NQVWGYQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGYKF 231


>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 231

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   I + L+ E ++V     G++ +++      D +ILD+ + +I G+EV
Sbjct: 6   ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNIDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+  LS  +S  DKV+GL  GADDY++KPF   ELVAR+ A +RR +  
Sbjct: 66  ARQIREQH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKKL 124

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q        +  G L +  + + V + G  I LT KE++++ LL+       + E   +
Sbjct: 125 NQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEILYLLASHPKKVYSVENIFH 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          + V +  LRKKL +      +I+TVWG GY  
Sbjct: 185 QVWGEAYFEGGNTVMVHVRTLRKKLKDDQRKSKWIKTVWGVGYAF 229


>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
 gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 229

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ ++A   +  L+  +F V +   G+ G+E     +FD IILD+ L  + GFE
Sbjct: 3   KVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R AK   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R + 
Sbjct: 63  ICKQIREAK-EIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQR 121

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + +   D      L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGYRFK 228


>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
 gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++   + + L+ E + V     G  G+        D ++LD+ L ++ GFEV
Sbjct: 8   ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +LS      DK+ GL  GADDY+ KPF  +EL+ARI+A++RR    
Sbjct: 68  LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A       +  GD+SV++ A+TV      + LT +E++++         T T+E  L+  
Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E   + +D F+ +LR K         +  TV G GY   
Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231


>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 248

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 241


>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
           HTCC2633]
          Length = 228

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ AL+  +   LK E F V +   GE+ + L +  + D ++LD  L  I G EV
Sbjct: 5   VLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDYI KPF  +EL AR+RA++RR R
Sbjct: 65  CRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A+  +  GD++++  A  V      IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK LS A G  + I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHIGRLRKALS-AGGEHDPIRTVRSAGYAL 225


>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 227

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 132/227 (58%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +   +E  L ++ ++    + GE G+ +    + D ++LD+ L  + G 
Sbjct: 1   MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+ +   PV +L+    +E KV  L +GADDY++KPF  EEL+ARIRA+VRR+ 
Sbjct: 61  EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++ V   G ++ L+ +E+ ++E L       L+++  L+ ++D
Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +P   ++DV++  LR+KL +  G  + I TV G GY      ++
Sbjct: 181 YAFDPGSNVVDVYVRYLRRKL-DRPGEPSLITTVRGAGYRFDPPREE 226


>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
 gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
          Length = 235

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 115/232 (49%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ L+++ + V+    G D ++  +    D  ILD+ L DI GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDIDGFRI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   +
Sbjct: 65  CQKIREQYY-YPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123

Query: 123 AQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +                 L +N +     + G  + LT  E+ ++  L   +   ++ 
Sbjct: 124 NNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVISS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E    +++  +       +   I +LR+KL+  A    +I+TVWG GY + +
Sbjct: 184 EELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
          Length = 247

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 126/242 (52%), Gaps = 7/242 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   +   + E   
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSVPSSAEGAS 242

Query: 235 TA 236
           T+
Sbjct: 243 TS 244


>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 234

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   ++      +  D G D + L K +  D ++LD+ +  + GF V
Sbjct: 16  ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDGFSV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R    S P+ +L+  SS +DK++G + GADDY++KPF+   L+A+  A++RRS   
Sbjct: 76  CKMAREMS-SLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSSG 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G +++   +  V V G  + LT KEY+++           +++  LN ++   
Sbjct: 135 KTDSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWGYD 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + +D  I  LR+KL +      +I T+   GY   E
Sbjct: 195 FAGTTRTVDTHIKTLRQKLGD---ESRHIVTLIRSGYKFEE 232


>gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 242

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    F   V   G DG+ L     +D I+LD  L    G+
Sbjct: 18  MRILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAMLPGRDGW 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + +TPV +L+    + D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 78  SVLSELRARQ-TTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGV 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V++  +  E  G R+ LT KE+ ++ LLS R    L++ +    ++D
Sbjct: 137 TRMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWD 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR KL         + TV G GYVL 
Sbjct: 197 MNFDSDTNVVDVHIRRLRSKLDEPFPAP-LLHTVRGVGYVLE 237


>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
 gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1272]
 gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1273]
          Length = 232

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++      +  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL+ARI++++RR   H
Sbjct: 67  CKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 EEKTNTITSGPFSLNIIEERLYKGGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E 
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFIHTVWGKGYVWKET 230


>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 229

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  +A      L+   F V V   GE G+ +     +D +ILDL +  + GFEV
Sbjct: 5   VLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R  K   P+ I++ +    D +RGL  GADDYI+KPF   ELVAR++A + R    
Sbjct: 65  CKKIRE-KQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLARYERL 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   ++++   DL ++ D + V V      LT KE+ ++  L+   N   +KE     
Sbjct: 124 VGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKEHLFER 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +++ + V I K+R+K+   +    YIETVWG GY 
Sbjct: 184 IWGVDALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYR 226


>gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 225

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 135/226 (59%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  +    E+DA++LDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGRQLKSTLEQNGYAVDLSTDGEDGHFMGSTEEYDAVVLDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RRS 
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + ++ GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNSSAELIAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G + I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GPDVITTIRGLGYSLNDPAQ 221


>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 225

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   ++ P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 245

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA      L+     V     G  G++      FD ++LDL L    G EV 
Sbjct: 21  LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLPGKDGLEVC 80

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G A
Sbjct: 81  RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 139

Query: 124 QSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +     
Sbjct: 140 GPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAGG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 200 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240


>gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 235

 Score =  274 bits (701), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  +  ++  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  AMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 269

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +    K E FNV     GE+ + +      D  ILD+ +  + G  V
Sbjct: 51  VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 110

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    +TP+ +L+  S  EDK+ G + GADDY++KPF+ + L+A+ +A++RR+   
Sbjct: 111 CRNIREVS-NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 169

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++++    L++N  +  V++ G  + L+ KEY ++  LS  +   L+++  L++++  
Sbjct: 170 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 229

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL + A   NYI TV G GY   
Sbjct: 230 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 267


>gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437]
          Length = 249

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD  ++  I   L SEN+ V V + G DGI   K  ++ A+ILDL L D+ G +
Sbjct: 17  HILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLMLPDLDGID 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R ++ + PV IL+      D + GL +GADDY++KPF+  EL AR++A +RR   
Sbjct: 77  VLRHIRESR-NVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLY 135

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++V G+L +N ++  + ++     LT KE++++EL+        +K    
Sbjct: 136 LNAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLF 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             ++      +   + V I +LR+K+        Y++TVWG GY L     +E+
Sbjct: 196 RSVWGDDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRLHGGGGEES 249


>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 247

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L+  + + L+ E ++V     G   +   + +  DA++LD+ L D+ G E
Sbjct: 21  RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RRS  
Sbjct: 81  VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGM 140

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S +  GDL+++ D+  V      + LT  E++++  L       L+K   L+ +
Sbjct: 141 TAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      +  +++++I  LRKK+    G    I TV G GYVL+  + +
Sbjct: 201 WHYDFGGQSNVVELYISYLRKKI--DNGRAPMIHTVRGAGYVLKPASGE 247


>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
 gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
           [Oscillochloris trichoides DG6]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   +   L+   + V     GE  + L +    D ++LDL L D  G+ +
Sbjct: 4   ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGYSI 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ LR        P+ +L+      D++ GL+ GADDYI KPFN  E+VAR+RA++RR  
Sbjct: 64  VQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRRGA 123

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q    +  G +S++LDA    + G  + LT  E+ ++ L         T+   +   
Sbjct: 124 GPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIEQG 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    + +D  I  LRKK+         IETV+G GY LR+ 
Sbjct: 184 LGYAYAGMERTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRLRQE 229


>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 226

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +  ++  +LK+EN++      GE  +E      FD +ILDL L    GF 
Sbjct: 3   KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ ++  +   PV IL+      DK+ G   G DDY++KPF+  EL+ RI+A++RR R 
Sbjct: 63  VLKEIK-NREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G ++VNL  + V   G  + LT KEY ++ELL    N   TKE  ++ L+
Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                 +  I+ V + +LR+K+         I+TVWG GY 
Sbjct: 182 PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222


>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
 gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
 gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
 gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
           Sd197]
 gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           dysenteriae 1617]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea
           maritima DSM 10411]
 gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family
           [Hippea maritima DSM 10411]
          Length = 222

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK  AH I   L   N+ V   D G+DG+ L    ++D +I+D  L  I G 
Sbjct: 1   MRILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    P+ ILS + S+++KV GL+ GADDY+ KP+   EL+ARI  ++RR++
Sbjct: 61  SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +NL+  TV     +I L   E++++  L   +   +T+ M L +++ 
Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P+  I+DV I +LR K+ +    K  I+T+ G GY + E
Sbjct: 181 YNFDPQTNIVDVHISRLRSKI-DRGFDKELIKTIRGIGYKIEE 222


>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
 gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K +A  +EL L+ E + V     G +G+ L     FD ++LD+ L  I G E
Sbjct: 4   KILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSINGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R      P+ +L+   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR   
Sbjct: 64  ICRRIRTQS-QVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  ++
Sbjct: 123 EQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + E  ++DV+I  LR KL       +YIETV G GYV+RE
Sbjct: 183 GYDTDIETNVVDVYIRHLRTKL--PGAMNDYIETVRGVGYVMRE 224


>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 226

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ALA  I ++L+++ F       G   +        D ++LDL L  I G E
Sbjct: 5   KILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL+SGADDY+ KPF   ELVAR+RA +R    
Sbjct: 65  VCRLIRAES-DVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +++    V   G  I LT  E+ ++  L+ R     T+EM L  ++  
Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R + + ++++V + +LR K+         + TV G GY 
Sbjct: 184 RHQADTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGYK 222


>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
 gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
           25986]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+KA+A  + + L  E F+V +   G D  +     EFD  +LD+ L DI GFE
Sbjct: 4   RILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           +LR +R +  + PV +L+   + +DK+ GL  GADDY+ KPF   EL+AR+ A +R    
Sbjct: 64  LLRTIRSSH-TYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R++      I    L +N DA++V V G  + LT  EY ++  L   + + +  E  
Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++    P     + V I  LR+K+ + A    +I+ VWG GY++ 
Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYIIE 231


>gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 228

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +A   +  L+   + V +   G  G++      +D II+DL L    G
Sbjct: 1   MKQILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLMLPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E++R +R  K   P+ I+S  S   DK++GL  GADDY++KPF+  ELVARI++ + R 
Sbjct: 61  YEIVREVRE-KYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRY 119

Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              + +      I    L +  D+  V V G  + LT KEY+++  L+   N   TK+  
Sbjct: 120 ERLSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V I KLRKK+    G   YIET+WG GY  
Sbjct: 180 FDRIWGEDYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGYRF 226


>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
 gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ +LA  +  +L+ E F V V   G   +E  +    D ++LDL L  + G +
Sbjct: 3   RVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR+   S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKRLRMTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAE 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      + +G + ++++  TV V+G  + L  KE+ ++E L       LT+   +
Sbjct: 122 AEAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + K +DV + +LR K+    G   ++ TV G GY   
Sbjct: 182 DRVWGSDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGYKFE 228


>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 227

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E F+    + G + + + +  + D ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  ++R     TP+ +L+  S   D V+GL+SGADDY+ KPFN +ELVARIR  +R +  
Sbjct: 64  VCSSIRAESG-TPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL V++    V     RI LT  E+ ++  L+ +     T+EM L  ++ 
Sbjct: 123 APPAEQLCIGDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + + ++++V + +LR K+         + TV G GY 
Sbjct: 183 YHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGYR 222


>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 235

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   +   L+++ +NV +TD G+ G+E CK    D ++LDL L DI G +V
Sbjct: 5   ILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDGIDV 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  +   + P+ +L+  S   DK+ GL+ GADDYI+KPF+  EL+ARI+ ++RRS+
Sbjct: 65  CKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    I  GD++++ +   V      + LT KE+++++LLS  +   LT++  L+ +
Sbjct: 125 NESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + +DV I  LRKK+ +      YIETV G GY L++
Sbjct: 185 WGYEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKLKD 229


>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
 gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 7   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 67  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ L        Y++TVWG GYV   + 
Sbjct: 187 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDG 237


>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
           GS-15]
 gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
           [Geobacter metallireducens GS-15]
          Length = 224

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 137/225 (60%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+K +A  ++  L+   F V +   GE+G+ + + Y +DA++LD+ L  + G 
Sbjct: 1   MKILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR  +   PV +++    IE +++GL  GADDYI KPF+  EL+AR+++++RRS+
Sbjct: 61  SILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+   DLS++ ++++V   G  I L+  EY ++E L+L     +++     H+YD
Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +IDV++  LR KL +    +  I TV G GY+L+ +A
Sbjct: 181 TDFDRDSNVIDVYVNHLRNKL-DKGFDRQLIHTVRGAGYILKGDA 224


>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 227

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +A  IE+ LK++ + +     G + ++  +    D I+LD+ +  + G E
Sbjct: 3   RILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + +R      P+ ++S  +   DK+ GL +GADDY+ KPFN  EL AR++A++RR   
Sbjct: 63  FCKYVR-KNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRANY 121

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + G A  ++  G ++++  +  V  +G  I LT +E++++ LL+  +      E     
Sbjct: 122 KTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++   E   K + V I  +R+KL  A  G++ I+TVWG GY + +
Sbjct: 182 VWNEPGEGSNKTVMVHISNIREKLEAALPGESVIQTVWGVGYKIEK 227


>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  HVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+     V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCKMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
 gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V V   GE    L     FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A+ + PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V + G  + LT  E++++ +L  R    +++   ++H+Y 
Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   IDVFI +LRKKL         IETV G GY L +
Sbjct: 181 QDFDRDSNTIDVFIARLRKKL-----PPGTIETVRGLGYRLAD 218


>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
 gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
           16795]
          Length = 226

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   ++  L++  + V  +  G DG    K ++ D I+LD  L +I G +
Sbjct: 3   KILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGID 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ +R  +     PV +L+  +  EDK+ GL+ GADDYI+KPF+ +E++ARI +++RR 
Sbjct: 63  LLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRY 122

Query: 120 RGHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +  +   I      D+ VN++   V   G  I LT KE+Q+++LL   K   LT+   L+
Sbjct: 123 KYTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E + +DV I  LRKK+ +       IETV G GY ++
Sbjct: 183 KIWGYDYYGETRTLDVHIRHLRKKIGDNDS--KLIETVRGVGYKIK 226


>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 257

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G  
Sbjct: 30  RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS G
Sbjct: 90  VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           HAQS +  G + ++     V V+GH + LT  EY+++  L       +++   + HLYD 
Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + +   I+VF+ ++RKKL         I+TV G GY+L     D
Sbjct: 210 DFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPPAD 250


>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 222

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD+ +   ++  L  E F VY    GE G+   K Y+   ++LD+ +  + G E
Sbjct: 4   RVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L V      + +L+    + DKV  L  GADDY+ KPF+ +ELVAR+RA++RR  G
Sbjct: 64  LCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +Q ++   DL +N   + V   G  I LT +EY ++ LL       LT++  L  ++  
Sbjct: 123 -SQEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + E  +++V +  LR+KL  A+GG   I+T+ G GYVL+
Sbjct: 182 NADLETNVLEVHMGHLRQKLE-ASGGSRVIQTIRGVGYVLK 221


>gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
 gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component
           regulatory system with PhoQ [Methylobacterium extorquens
           AM1]
          Length = 225

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+        I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219


>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 227

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 61  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                +  ++D  I +LR K+ + A     I TV G GYVL       T
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYDPKLIHTVRGMGYVLEARGSSTT 227


>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 265

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +    K E FNV     GE+ + +      D  ILD+ +  + G  V
Sbjct: 47  VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 106

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    +TP+ +L+  S  EDK+ G + GADDY++KPF+ + L+A+ +A++RR+   
Sbjct: 107 CRNIREVS-NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 165

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++++    L++N  +  V++ G  + L+ KEY ++  LS  +   L+++  L++++  
Sbjct: 166 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 225

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL + A   NYI TV G GY   
Sbjct: 226 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 263


>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 236

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR+ 
Sbjct: 73  QVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRNT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQIITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
 gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
 gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
 gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
 gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 255

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L+  + + L+ E   V     G   +   + +  D ++LD+ L D+ G  
Sbjct: 28  RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R +VRRS  
Sbjct: 88  VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL ++ D+  V   G  +HLT  E++++  L       L+K   L+ 
Sbjct: 148 AQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  +++++I  LR+KL    G    I T  G GY+++ 
Sbjct: 208 VWSYDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLIKP 253


>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ LK+E + V     G + +E+ +    D IILD+ +  + G E 
Sbjct: 6   ILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIMMPKMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  + + P+ +LS  +   DK+ GL SGADDY+ KPFN  EL+AR+++ +RR +  
Sbjct: 66  CLNIRKNR-NMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYKKL 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + + +I   +L+++++   V++    I+LT +E+ ++ LL+  +      E    
Sbjct: 125 NVGSENKEGVIEIDNLTIDVNTHEVKLDNREINLTAREFDILLLLARNRGIVFNTEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++          I V I  +R+K+        +I+T+WG GY + +
Sbjct: 185 KVWKDEFFESDNTIMVHIRNIREKIEENPKKPVFIKTIWGVGYKIEK 231


>gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii]
          Length = 220

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  LA  +E  L++  + V     G+    L     FDA++LDLGL  + G 
Sbjct: 1   MRVLLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+   S  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++     V + G  I LT  E++++ +L       ++++  + HLY 
Sbjct: 121 VHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   IDVFI +LRKKL       + IETV G GY L  N+
Sbjct: 181 QDFDRDSNTIDVFIGRLRKKL-----PPDTIETVRGLGYRLAGNS 220


>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
 gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
 gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
 gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 241

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
 gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 226

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+++LA  +  +L+ E F+V +   G   +        D ++LDL L  + G +V
Sbjct: 4   ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKRLRAVS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGET 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++ +G + ++++  TV V G  I +  KE+ ++E L       LT+   ++ ++
Sbjct: 123 IEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + K +DV I +LR K+        ++ TV G GY   +
Sbjct: 183 GADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED 226


>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I+  +K+  +N Y    G++ +E+ +  + D +ILD+ + D+ G EV
Sbjct: 4   ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLDGKEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R  K STP+  LS      DK+ GL  GADDY++KPFN  EL+AR++A++RRS   
Sbjct: 64  LRKIRE-KSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTIF 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  +   I+   L ++ ++  V      I LT  EY++I      +N   TK     
Sbjct: 123 NNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KII V+I KLR+K+ +     N+I+T+ G GY+ + +
Sbjct: 183 EVWGQCYLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIFQGD 230


>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
 gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDRDINRQVVAALEEAGYVADKAFDGEEGGYLGENEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RAI+RR+ 
Sbjct: 61  TVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAILRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G  I LT  EY+++  L       +++     HLYD
Sbjct: 121 GHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+        I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLIDPN 219


>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++++A   +  L+   F V +   GE G +     +FD  ILDL L  I GF 
Sbjct: 3   RILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGIDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K +TP+ I+S      DK+ GL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREKK-NTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    + ++  A+ V V     + T KE+ ++  L+   N   TKE   
Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 QKIWNMDSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRFK 228


>gi|294142678|ref|YP_003558656.1| OmpR/PhoB family response regulator [Shewanella violacea DSS12]
 gi|293329147|dbj|BAJ03878.1| response regulator, OmpR/PhoB family [Shewanella violacea DSS12]
          Length = 246

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  LA+ I+L L + ++ V  +   +   E  +  +FD I++D  L D  G  
Sbjct: 15  HILIVEDEPDLANLIKLNLNTLSYGVSHSTTLKHARETLEIKQFDLILIDRMLPDGDGIM 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + LR +  + P  +L+   S  D V GL++GADDY+ KPF+  EL AR++A++RRS  
Sbjct: 75  LCQQLRESGQTVPCMMLTAKDSEADIVLGLEAGADDYLVKPFSVLELRARVKALLRRSHL 134

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S +    +++N   + V      + LT +E+ ++  ++       ++   L  +
Sbjct: 135 IEEQQESRLDFYGITINCTTREVIAFDTHLELTAREFDLLLFMAKHPKQVFSRMQLLEAV 194

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++  I +LR KLS+ A   + ++TVWG GY     ++
Sbjct: 195 WGYSYSGYEHTVNSHINRLRAKLSHCASTADLVKTVWGVGYKFSPPSQ 242


>gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
 gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62]
          Length = 238

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 154/226 (68%), Positives = 185/226 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N  VY TDLGE+GI+L K Y++D I+LDLGL D+ G 
Sbjct: 1   MRVLLVEDDPRTSKSIELMLSHANLIVYATDLGEEGIDLAKLYDYDLILLDLGLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG + VNLDAKTVEV G  +HLTGKEYQMIELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL+ A GG+++IETVWGRGYVLR+   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLATATGGESHIETVWGRGYVLRDPEP 226


>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 227

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  I   L+ E +   ++  G +G+E     + D I+LDL L  + G +V
Sbjct: 4   ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++R ++ +   PV +L+      DKV G + GADDY+ KPF+  EL+ RI+AI+RR+ 
Sbjct: 64  CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRNA 123

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G +S++ +   V V G  +  T  E++++  L +R     ++++ L 
Sbjct: 124 NANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +D  + +LR K+  A    + I+TV G GY L 
Sbjct: 184 DVWGYNFVEDTRTVDTHVTRLRTKMGEAG---DMIKTVRGFGYKLE 226


>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
 gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           kristensenii ATCC 33638]
          Length = 279

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 54  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 114 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMSNEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALETD-GHDRMVQTVRGTGYRF 275


>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
 gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
          Length = 239

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238


>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 224

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  + H IE+ L +  F  +  + G +   + +    D +ILD+ +    GFEV
Sbjct: 4   ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+  LS      DKV+ LQ G DDYI KPF+  EL+AR+ A++RR+ G 
Sbjct: 64  CSRIR-GKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTGGL 122

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I  G ++++  A+ V V G ++ LT KEY+++      KN  L++E  L +++ 
Sbjct: 123 KSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYIWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 ++ +D  I  LR KL    G  +YI+TVWG GY     ++
Sbjct: 183 IDYTGSLRTVDTHIKTLRMKL----GVGDYIQTVWGVGYKFEVPSE 224


>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 238

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G++ +++     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 TSEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY      +
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEVPEE 238


>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 241

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F+V     G + +E     E D ++LD+ L D+ GF 
Sbjct: 13  RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   + TPV  L+    + D V GL  G DDY++KPF+ EE+VARIRA++RRS+ 
Sbjct: 73  VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQA 132

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H     ++   DL ++ DA+ V   G  + L+  E++++  L L     L+K   L+H++
Sbjct: 133 HDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLS----NAAGGKNYIETVWGRGYVLR 222
           +     E  I++ +I  LR+K+     + A     I T  G GYVL+
Sbjct: 193 EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVLK 239


>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
          Length = 258

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ALA  I ++L+++ F       G    E+ +  + D ++LDL L  + G E
Sbjct: 38  RILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMDGIE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S   D VRGL+SGADDY++KPF   ELVAR+RA +R    
Sbjct: 98  ICRLIRAES-DVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +V G++++++   ++   G +I LT  E+ ++  L+ +     ++E+ L  ++  
Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWGY 216

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++  + +LR K+         + TV G GY 
Sbjct: 217 RHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGYK 255


>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   +     +  +  +++      D ++LD       G +
Sbjct: 4   RILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+     EDKVRGL+ GADD+++KPF+ +ELVARI+A++RRS
Sbjct: 64  LAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++  +  V V    + +   E++++      +    ++E  L+++
Sbjct: 124 APTCLEDPIDVQGLQLDPVSHRVTVGDEVLDMGPTEFRLLHFFMTHQERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAV-THSGHDRLIQTVRGAGYRF 225


>gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
 gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family
           [Methylobacterium extorquens AM1]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 160/225 (71%), Positives = 193/225 (85%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR LLIEDD  +A SIELML+SE    Y TD GE+GI+L K Y++D I+LDL L D+ G+
Sbjct: 1   MRALLIEDDSNVAQSIELMLRSETIVPYTTDTGEEGIDLAKIYDYDIILLDLNLPDMSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR+LRVAK+ TPV ILSGM  IEDKV+GL +GADDY+ KPF+K+EL+ARI AIVRRS+
Sbjct: 61  DVLRSLRVAKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS++  GDL+VNLDAKTVEV GH+++LTGKEYQM+ELL LR+ TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVVTVGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL+NA+GG+N+IETVWGRGYV+R  A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLANASGGQNWIETVWGRGYVVRNPA 225


>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 223

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  I   L+   F V     G DG+ L     +   ++D+ L  + G 
Sbjct: 1   MRILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K++TP+ ILS   S+ED+VRGL++G+DDYISKPF+  EL+AR++A++RRS 
Sbjct: 61  KVIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +  G+LS+NL  + V      + L  +E+ ++E         L+K M + H++
Sbjct: 121 SVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  ++DV +C+LR K+      +  + T+ G GYVL+E
Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRD-WDRKMLHTLRGVGYVLKE 223


>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 225

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V   G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +   T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
 gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
           [Chromobacterium violaceum ATCC 12472]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L     +V      E  + L +    D ++LD  L    G +V
Sbjct: 5   ILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGASGIDV 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DKV GL++GADDYI+KPF+  EL+ARI+A++RR  
Sbjct: 65  AKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L ++     V   G  I L   E++++           ++   L+ ++
Sbjct: 125 PQMTDDAVDVQGLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L         I+TV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRSALE-GTQHDGLIQTVRGTGYRF 225


>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 235

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ LK++ + V+    G D ++  +    D  ILD+ L DI GF 
Sbjct: 4   QILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDIDGFR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   
Sbjct: 64  ICQKIREQYY-YPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +  +                 L +N +     + G  + LT  E+ ++  L   +   ++
Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E    +++  +       +   I +LR+KL+  A    +I+TVWG GY + +
Sbjct: 183 SEELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
 gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F   +   G +G+ L    ++  I++DL L  + GFE
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ I+S  +   DK+R    GADDYI+KPF+  ELVAR +A + R + 
Sbjct: 64  LCRQIRKNK-EVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + I    L ++  A+ V V+   +  T +E+ ++E L+   N   +K   
Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++      ++  + V + KLR+KL   +    YIETVWG GY  
Sbjct: 183 FERIWGMDSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGYRF 229


>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
 gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D+K +   +    K  NF V     GE  ++  +  EFD I+LD+ +    GF+
Sbjct: 3   KVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI AI+RR   
Sbjct: 63  VCRQVRTFS-NVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  + +  +L ++L+  TV++    I LT KE +++  L+  +N   T+E  L+ +
Sbjct: 122 KNDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +D  I +LR KL N    K  I+T+WG GY  
Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGYKF 224


>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 236

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V   + GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGINGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 242

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY+++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
 gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
 gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
 gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
          Length = 223

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  +   I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYDGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 234

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I++ L +E +       G + +EL K      IILD+ +  + G E
Sbjct: 5   KILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K S P+ +LS  S   DK+ GL +GADDYI+KPFN  EL+AR+++ +RR   
Sbjct: 65  ACMKIREEK-SMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      + ++   D+++N+    V++    + LT +E+ ++ELL+  +    + E
Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++          + V I KLR+K+        YI+TVWG GY + +
Sbjct: 184 KIYELVWKEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 234


>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
 gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +D++ L       LK++ + V   D G+D     +   +D  ILD+ +    G 
Sbjct: 1   MRILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR A  + PV +L+ + ++ D+V GL +GADDY++KPF  +EL+ARIR ++RRS 
Sbjct: 61  SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL++ L  +TV   G  I L+ KEY ++E L   K   L++    +H++D
Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV++  LR+K+ +    K  I+TV G GY +R+  
Sbjct: 181 YDFEGGSNIVDVYVRYLRRKI-DDPFEKKLIQTVRGVGYTIRQTP 224


>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 230

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +   +E+ L    +       GE G+ L    ++D I+LDL L  + G
Sbjct: 1   MKQILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + LR+ K +TPV +L+  S   D+V GL+ GADDY++KPF+  EL+ARI+A++RRS
Sbjct: 61  IEVCKKLRIKK-NTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRRS 119

Query: 120 RG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  + +    L +++D + V     +I L+ KE++++ L++       ++   
Sbjct: 120 DAPKVEENNSTTLNFEGLFIDIDKRKVLHNKQKIDLSPKEFELLVLMASNPGRNYSRTEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LN ++    E     ++  I +LR K+ +      YI T WG GY   E 
Sbjct: 180 LNIIWGYNFEGYEHTVNSHINRLRAKIESNMAQPMYILTTWGVGYKFNEE 229


>gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 245

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 2/230 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED++ LA  + L LKS N  V      +   ++    + D I++D  L D  G  +
Sbjct: 16  ILLIEDEQDLAKLVMLNLKSMNHAVIHCVTLQQASQVIATKQIDLILMDRMLPDGDGITL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R      P  +L+   S  D V GL+SGADDY+ KPF+  EL AR++A++RR    
Sbjct: 76  CQQIRQDGNELPCMLLTAKDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRGTQI 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +    +S+N + + V      + LT +E+ ++  L+       ++   L  ++ 
Sbjct: 136 AHQDESLEFNGISINCNTREVIAFNETLELTAREFDLLLYLAQHPKQVFSRMQLLEAVWG 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                    ++  I +LR KL+  A   + ++TVWG GY     A     
Sbjct: 196 YSYSGYEHTVNSHINRLRNKLARNACTTDLVKTVWGVGYKFAPPANQAAS 245


>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
 gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
           sp. HGF5]
          Length = 228

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+ A+  +++L L+ E F V     G+D +E  +  +   ++LD  L    G 
Sbjct: 3   MTLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLPGKSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR +  +  + +++  S   DK+ GL+ GADDYI+KPF+  EL +RIR+++RR+ 
Sbjct: 63  EVCKELRQSS-ACGIIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTA 121

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  GDL ++     V   G  I LT  E++++  L+ R     ++   +   
Sbjct: 122 PIQVEAPPLQRGDLLISETQCQVTRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKAA 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D       + +D  + KLRKKL        YI+TV+G GY   E 
Sbjct: 182 MDDDFMNYERTLDSHVSKLRKKLEPDPDHMKYIQTVYGFGYRFGEP 227


>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 225

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 118/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   +E       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  HVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +++      D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    I          + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
 gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
          Length = 223

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 129/220 (58%), Gaps = 6/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   I   L+ ++  V     GE+ ++  K  E+D ++LD+ L  + GF+
Sbjct: 5   KILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 65  VCQAIREFS-DMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +S     ++V G++ ++ +++ V +    I+LT KEY ++ELL++  N   ++E  L+
Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
            ++      + + +DV I +LR+K+        Y+ T WG
Sbjct: 184 LVWGVDYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223


>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +++      D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    I          + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K L   +   L  E  +V  +  G D +++    EFDA++LD+ L  + GF
Sbjct: 1   MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   +  D +RGL +GADDY++KPF+  EL+AR+RA+ RR+ 
Sbjct: 61  EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S +V  DL+++  +  V      IHLT  E+ +++ L       ++++  + +++ 
Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                E   +D FI  LR+K+ +  G    I+TV G GY
Sbjct: 181 YDRAIENNTLDAFIRLLRQKV-DTQGHPKLIQTVRGFGY 218


>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
          Length = 232

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  IE+ LK++ + V+    G D ++  +    D +ILD+ L D+ GF +
Sbjct: 5   ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDVDGFRI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   +
Sbjct: 65  CQKIREQYF-YPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVRY 123

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            Q +              LS+N +     + G  + LT  E+ ++  L   +   ++ E 
Sbjct: 124 NQPINKQALENIEYDIRGLSINKNNHKCSLFGKELQLTPIEFSILWYLCDHQGKVVSSEE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++  +       +   I +LR+K+   A    +I+TVWG GY + 
Sbjct: 184 LFEAVWKEKYLDNNNTVMAHIGRLREKMKEPAKKPKFIKTVWGVGYTIE 232


>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 243

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +++      D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    I          + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGAPGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 236

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   +   L    F V+  + GE+ +     +  D ++LD+ L D  GFEV
Sbjct: 14  LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGFEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TP+  L+   ++EDKVRGL  G DDY++KPF+ EE++ARIRA++RRS+G 
Sbjct: 74  ARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSKGD 133

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A     +   DL ++ +   V   G+ + L+  E++++    +     L+K   L+H++ 
Sbjct: 134 APPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHVWR 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  I++ ++  LR+K+ N       I+T+ G GYVLR  +
Sbjct: 194 YDFRGDDGIVESYVSYLRRKIDNT--EPRLIQTLRGIGYVLRTPS 236


>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 774

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 118/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222



 Score = 96.9 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 8   DDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR 67
           DD  +   +E +L      V   +      ++ +    D +I+D+ +    G ++ + +R
Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552

Query: 68  VAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                   P+ +L+  +  E +    ++GADD+ISKP    EL+AR+ + + RSR
Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSR 607



 Score = 51.8 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +L+++ D  L   I     S      +         +   Y+   I+L+L        G 
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            +L  +       PV I S  SS  D++   + G+  ++ KP +  ++V  +  I+
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIVEIVTGIL 479


>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 242

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ ++  +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S I         ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 TGASGIPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 232

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 228

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++ +  +  L+   + V     G +G+++    + D I+LDL L  + G E+
Sbjct: 5   ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMDGMEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR       + +L+  S   D+V GL+ GADDY++KPF+  ELVAR+ AI+RR R  
Sbjct: 65  TARLRERS-DVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQRNK 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+    + ++ +A+     G  + LT  E+ ++  L+   N  L++E  +  ++ 
Sbjct: 124 TAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++DV++ +LR+K+    G  N I T  G GY   +  
Sbjct: 184 ADFFGTDRVVDVYVSQLRRKIEAITGE-NVIRTARGVGYRFVDTP 227


>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 230

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIRE-KSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++         I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|283781006|ref|YP_003371761.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283439459|gb|ADB17901.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 223

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD  L  ++E  L            G+ G+E     +FDA++LD+ L D  G 
Sbjct: 1   MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R   I TPV +L+ + S++D+V GL SGADDY+ KPF   EL+AR+ AI RR++
Sbjct: 61  EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G L ++L  + V      + LT  E+ ++E L       +T++M   HL++
Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    +++V I +LR K+         I+TV GRGYVLR
Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEP-LIQTVRGRGYVLR 221


>gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 262

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  ++  LK       +   GE G+ L     +D +I+D  L  + G 
Sbjct: 37  MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+++LR     TPV ILS +  ++D+V+GL++G DDY++KP+   EL+AR+ A+ RR+ 
Sbjct: 97  SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ I  GDL ++  +  V   G  I L  +EY+++E L       +T+ M L H++
Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         + TV G GY +R+  
Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKP-LLHTVRGAGYTIRDGP 261


>gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72]
 gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72]
          Length = 228

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 89/228 (39%), Positives = 130/228 (57%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   A  I   L+     V V   G DG+ L     FDAI+LD  L  + G 
Sbjct: 1   MKILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRMLPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR ++I+TPV +LS +  ++D+V GL++G+DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A   Q+ + T DL ++L  ++V     RI L  KE++++E L       +T+ M L  
Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  +IDV I  LR K+ +  G    I TV G GY L  +A
Sbjct: 181 VWDYHFDPQTNVIDVHISNLRAKI-DLPGLPPLIHTVRGAGYRLGGDA 227


>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
 gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
          Length = 242

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  273 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D++ +   +   L+ E +       G + IE  K   F  ++LD+ + ++ G  
Sbjct: 7   RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R    + P+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI A +RR+  
Sbjct: 67  ACMRIREFS-NVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++    G LS++++ + V V+G  ++LT KE+ ++ L         ++E  L+ +
Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +       ++ +D  I  LR KL  A G   YI+TVWG GY    N 
Sbjct: 186 WGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229


>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 260

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +   +   L +   +V +   G   +   +    D ++LDL L  + G E
Sbjct: 33  HVLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGLE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR      P+ +L+ +   +D++ GL+ GADDY++KPF+  ELV R+ +I+RR+  
Sbjct: 93  VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAA 152

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    +V G L V+  A+   + G  + LT +E+ ++  L        T+E  L+ ++ 
Sbjct: 153 PATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVWG 212

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +   + V + +LR+K+         I T+WG GY 
Sbjct: 213 WEF-GDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGYR 251


>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 229

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  NF V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR+  
Sbjct: 63  VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTAD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++       ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 ESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + K+IDV I +LR K+ +      +IET+WG+GY  +E
Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYRWKE 229


>gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 225

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+ +    ++D +I+D  +  + G 
Sbjct: 1   MRLLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPALSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A    P+  L+   ++ED + GL++GA+DYI KPF  EEL+ARIR  + RSR
Sbjct: 61  EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQL-RSR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G +++N     V   G  + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDV+I  LR+KL       N+I+T+ G GY++RE
Sbjct: 180 IHFDADTSVIDVYITFLRRKLEAVGCN-NFIQTIRGIGYIIRE 221


>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
 gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
 gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
           J1-023]
          Length = 238

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
 gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           4222]
          Length = 242

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRVREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +   +   L+   F V     G     L +    D +ILDL L D  GF++
Sbjct: 4   VLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R+LR    +   P+ +L+      D++ GL+ GADDYI KPFN  E+VAR++A++RR S
Sbjct: 64  ARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRRVS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++ +  G L ++LD     + G+ + LT  E+ ++ L         T+   L    
Sbjct: 124 GGTVRNRLEQGSLVLDLDGHQAWLGGNELELTPTEFALLSLFMRYPGHAFTRAELLEQGL 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + ID  I  LRKKL         IETV+G GY LR
Sbjct: 184 GYAATGLERTIDSHIKNLRKKLEYDPAAP-VIETVYGIGYRLR 225


>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 237

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D++++   +   L+ + + V     G + +   +   FD ++LD+ L  + G E
Sbjct: 7   RILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR ++ S P+ +L+  S   DKV GL+ GADDYI+KPF+  E  +R++A +RRS  
Sbjct: 67  VCRRLR-SRSSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +   +L ++ D +TV ++G  I  T  E++++  L+       T++M L 
Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + IDV I  LR+K+   A    Y+ TV G GY  R+ 
Sbjct: 186 RVWGDSAYRDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRFRDT 233


>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 235

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F V     G D +   + +  D I+LD+ L D+ GF+
Sbjct: 8   RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+R LR     TPV  L+   + EDK+RGL +G DDY++KPF+ EE+VARIRA++RR+  
Sbjct: 68  VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGA 127

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   D+ ++ ++  V  +G  + L+  E++++          L+K   L+H
Sbjct: 128 GDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDH 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D     +V I++ ++  LR+K+ NA      I T+ G GYVLR
Sbjct: 188 VWDYDFRGDVGIVESYVSVLRRKIDNA--DPRLIHTLRGVGYVLR 230


>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 226

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
 gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  IE+ L S+ + V+  +    G+E+ +  E   ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIMMPGMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  SR  A + I    + +N D   V V    I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPNSGSREQANNEITIKGMVINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGRVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR KL         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKLKEDTRQSKIITTVWGVGYKIEK 234


>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 235

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 122/219 (55%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD++L  +I +ML+ E F       G DG E     + D +++DL L  + G E+
Sbjct: 15  ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGTEI 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A+++TP+ +LS M    DKV  L+ GADDY+ KPF   EL ARIRA++RR+   
Sbjct: 75  CKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRASTD 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A+ ++   ++ V+ + + V+ +G  + LT  EY ++       +  LT++M LN ++   
Sbjct: 135 ARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWGYE 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             P  + +D  + KLR+KL        +  TV G GY  
Sbjct: 195 FFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233


>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 220

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRS 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++ RR+
Sbjct: 61  RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     + V G L+V+  A+ V  +G  + LT KE+ ++E L LR    + K   L+H++
Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL     G   I TV G GY L 
Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAERIRTVRGAGYRLE 218


>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 227

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +   L+S  F       G D +   +      IILDL L  + GFEV
Sbjct: 6   ILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLMLPGLDGFEV 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+      D++ GL+ GADDY+ KPF+  EL+ R+RA+++R  
Sbjct: 66  CKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKRHA 125

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   ++    LSV+L A  V + G  + LT  E++++  L       LT++  LN +
Sbjct: 126 PEQERRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLNSV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  I +LR+KL         IETV G GY  +E
Sbjct: 186 WGYEFEGYARTVDTHIRRLRQKLG---SCARMIETVRGVGYRFKE 227


>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD+ +     L LK  ++ V+    G +GI + +      ++LD+ L  + G+E
Sbjct: 4   KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+     P+  LS    I DKV+GL +GADDY++KPF+  EL ARI+A +RRS  
Sbjct: 64  ICQKIRMLS-EAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKM 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R   + +   G+L ++LD+  V  +G+++ L  KE Q++ LL   KN   + E   +
Sbjct: 123 NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      ++K + V I  LR+K+         I+TV G GY      +D
Sbjct: 183 QIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTADED 233


>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
 gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
          Length = 245

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  +EL LK+ENF VY      D +   +  + D  ILD+ L +  GF++
Sbjct: 19  ILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETDGFQI 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K + PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR +  
Sbjct: 79  CRKIRE-KYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKRY 137

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +   G L +N+      +    + LT  E+ ++ +L   +   ++ E    
Sbjct: 138 NVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEELFR 197

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++           I V I  LR+K+ ++     YI+TVWG GY + 
Sbjct: 198 QIWKEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGYKIE 244


>gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 61  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 225

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK +   +   L+   +       GE+G  L +   +DAIILD+GL    G 
Sbjct: 1   MRLLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKADGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A + TPV IL+      DKV G  +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G ++++  +  V V G ++ LT  EY+++  L       +++     HLYD
Sbjct: 121 GHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL+        I+TV G GY++  N
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLAVD-----LIQTVRGLGYLVDPN 219


>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis AF2122/97]
 gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T92]
 gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T17]
 gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           T46]
 gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
           K85]
 gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
 gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
 gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
           AF2122/97]
 gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
           Tokyo 172]
 gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T46]
 gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis K85]
 gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis K85]
 gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T17]
 gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis T92]
 gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis EAS054]
          Length = 230

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + +++      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++ 
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL+++   + V     RI LT  E+ ++E+L       LT+   L  +
Sbjct: 124 EDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 184 WGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 230


>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
 gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + I + L  + +N+     G++ ++  K + F  IILD+ + ++ G+E
Sbjct: 4   KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R   ++ P+ +L+  +   DKV+GL  GADDY++KPF  EEL+AR+ A++RR+  
Sbjct: 64  VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +   +L +++D   V VQ + +HLT KE+++++LL L       ++  L  +
Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I  +R KL         IETVWG GY L+E
Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228


>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 243

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    ++V     GE+ +E  +  E D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 234

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA      L+     V     G  G++      FD ++LDL L    G EV 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G A
Sbjct: 70  RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128

Query: 124 QSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +     
Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 245

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-----KFYEFDAIILDLGLTD 56
           R+L++EDDK++  ++   L +E + V     G++             + D I+LDL L +
Sbjct: 14  RLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLPN 73

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G E+ R +R   I TP+ I+S   S  D+V GL+ GADDY+ KPF   EL+AR RAI+
Sbjct: 74  LNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAIL 133

Query: 117 RRSRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS  +      +  ++   ++S+      V      I+L  KEY+++EL         +
Sbjct: 134 RRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVWS 193

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  ++      + K +DV I  +R+K+ + A   +YI TV G GY  
Sbjct: 194 RDQLLEQIWGIDYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244


>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
 gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
          Length = 223

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  +   I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
 gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
          Length = 229

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
 gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 227

 Score =  273 bits (699), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 61  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
 gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
          Length = 235

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IEL LK++ + VY    G D ++  +  + D  ILD+ L D+ GF 
Sbjct: 4   KILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDVDGFH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+ AR++  +RR   
Sbjct: 64  ICQKIRERYF-YPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRRYVC 122

Query: 122 HAQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +             +      L +N +     + G  + LT  E+ ++  L   +   ++
Sbjct: 123 YNNAADIEKENVLVTEYDINGLVINKNTHKCTLYGKAVTLTPIEFSVLWYLCENRGKVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E    +++  +       +   I +LR+KL   A    +I+TVWG GY + E
Sbjct: 183 SEELFENVWGEKFLDNNNTVMAHIGRLREKLKEPARNPKFIKTVWGVGYTIEE 235


>gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator
           [Burkholderia vietnamiensis G4]
 gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia vietnamiensis G4]
          Length = 225

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 226

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 232

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 153/223 (68%), Positives = 182/223 (81%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD   + SIELML   N NVY TDLGEDGI+L K Y++D I+LDL L D+ G EVLR L
Sbjct: 2   EDDPTTSRSIELMLTHANLNVYCTDLGEDGIDLAKLYDYDLILLDLNLPDMSGHEVLRQL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R+A++ TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+GHAQS+
Sbjct: 62  RLARVDTPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I TG + VNLDAKTVEV+G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEPE
Sbjct: 122 IRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPE 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +KIIDVFICKLRKKL+ A GG++YIETVWGRGYVLR+    ET
Sbjct: 182 LKIIDVFICKLRKKLAEATGGESYIETVWGRGYVLRDPVTTET 224


>gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 228

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +V+++LR A  + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +       I+TV G GYVL + 
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-TPKLIQTVRGMGYVLEDP 224


>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+ A+   I + LK   F+V+    G + +       FD ++LD+ + ++ GFE
Sbjct: 3   RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
              A+R    +  + +L+  +  EDK+ GL  GADDYI+KPF+  ELVARI+A++RR   
Sbjct: 63  ACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRVEK 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      + +G  +++L AK V   G  I LT  EY +I  L   +   L+++  L+ +
Sbjct: 123 VKRKDSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEIVLSRDALLDAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR+K+ +      YIET+WG GY  R
Sbjct: 183 WGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWR 226


>gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 228

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 2   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 62  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 121 PRDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 181 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 221


>gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
          Length = 228

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 2   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 62  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 121 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 181 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 221


>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 238

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 122/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G+  + +     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V G  I LT KEY ++  L+   +    +E 
Sbjct: 125 SSEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY   
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234


>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 131/225 (58%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   +   + ++ DA++LD+ L D  G E
Sbjct: 24  RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RR+  
Sbjct: 84  VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRTTM 143

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 144 SVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++++I  LRKK+   AG    I T+ G GYVLR 
Sbjct: 204 WNYDFGGQANVVELYISYLRKKV--DAGRDPMIHTMRGAGYVLRP 246


>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-272]
 gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri K-227]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
           ATCC 53653]
          Length = 290

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  + + L+ E + V     G + I   +    DA++LD+ L D+ G  
Sbjct: 66  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 185

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 186 AAARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 245

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG    I T  G GY+++ 
Sbjct: 246 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 288


>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 222

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   I   L  E + V   + GE  +++     + D II+D+ +  + G+
Sbjct: 4   KILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKMDGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+ +L+  S  +D+++G + G D+YISKPF+ + L AR+ A++RR+ 
Sbjct: 64  QLCKEVRKLS-KVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + ++    ++VN  A TV + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 123 GDNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+        +I T+WG GY   
Sbjct: 183 YDYYGDARTIDTHVKKLRSKMGEKG---KFISTIWGMGYKFE 221


>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 224

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K  A  I   L++E+F V V+  G + + L     FDAI+LD+ L    G 
Sbjct: 1   MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K  TPV +LS    + ++V GL +GADDY+ KPF   EL+AR+R+I RRS 
Sbjct: 61  SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL+++   +  +  G    LT +EY+++E L         +   L  ++D
Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   ++DV+I +LR+K+ +       + TV   GYV++E +
Sbjct: 181 YDFDPGTNLVDVYIKRLREKV-DEGFEPKLLHTVRNVGYVMKEQS 224


>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
           protein [Pseudonocardia sp. P1]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  ML+ E F   V   G D +        D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V +ALR ++ + PV +++   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCKALR-SRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGE 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G + ++++   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 ATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      + K +DV + +LR K+ +      ++ TV G GY  
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGYKF 227


>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 232

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+V +   G   +E       D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRATS-SVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDV 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G  + ++  G + ++++   V V G  + +  KE+ ++E L       LT+  
Sbjct: 123 SAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ ++      + K +DV + +LR K+        ++ TV G GY   
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKFE 231


>gi|331270596|ref|YP_004397088.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329127146|gb|AEB77091.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 231

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+++++  I+L+L+ ++F V     GEDGI+         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDEQSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGINGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+ +    DK++GL+ GADDY+ KPFN  EL ARI +++RR   
Sbjct: 66  VCEILRKNHPKVGIIMLTALGQDVDKIKGLEHGADDYMIKPFNPLELAARIISLIRRMNF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   +  ++++    V+L++KT      +++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SNDTSSEILISEPFKVDLNSKTAYKNEEKLNLTPKEFLLLKIFIENIGRSLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E+
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGIGYIWKED 231


>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
 gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
          Length = 230

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G +
Sbjct: 3   RILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 63  FLKIIRE-KSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++         I    L++++D  +V   G  + LT  E+Q++ L +       TKE   
Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 182 RSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 229


>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ ++     + D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  ++    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGVPGIPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 227

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V + D G  G  L    ++D I+LD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +   IDV + +LR K+ N       I+TV G GYVL    +D
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYVLEVPDED 227


>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
           [Bacillus pseudofirmus OF4]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   ++L L+ E + V     G + +E  +   +  ++LD+ + ++ GF
Sbjct: 4   IRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEMDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      PV +L+  +   DKV+GL+ GADDY++KPF +EEL+AR+ A++RR  
Sbjct: 64  EVCREIRKVS-QVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYG 122

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +    L +  +A  V      + LT KE+ ++EL  L KN   +++  L 
Sbjct: 123 VSEPESRGNTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVL 221
            ++      + + +D  +  LR KL+ A   G++ I+TVWG GY L
Sbjct: 183 LVWGYDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228


>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 241

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/237 (34%), Positives = 132/237 (55%), Gaps = 10/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  L+  +   L +E + V V D G+ G E     +FD I+LDL L  + GFE
Sbjct: 4   RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   + TPV IL+  ++ E+ V+GL+SGADDYI+KPF   EL+AR+ A++RRS G
Sbjct: 64  IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S IV G L++  +   V + G  I L  KE++++  L+ +    +T++
Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K  +
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKKQAS 239


>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
 gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
          Length = 242

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
           17244]
          Length = 233

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  +I + L +E +N++    G + + + +  E   I+LD+ +  + G   
Sbjct: 6   ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGIAT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + PV  LS  S   DK+ GL  GADDY++KPFN  EL+AR+++++RR    
Sbjct: 66  ITKVRE-KQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRRYTIL 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S   A +++ TG LS+N D   V V G  + LT  E+++++LL  R N   + E   
Sbjct: 125 GNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVFSMEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          + V +  +R+K+        Y++ VWG GY + ++
Sbjct: 185 EKVWGELSYMTDNTVAVHVRHIREKIEIDPKNPKYLKVVWGIGYKIEKH 233


>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ I+       D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  S I          L ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGNSGIPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
 gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
           [Escherichia coli CFT073]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
 gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
           MR-1]
          Length = 241

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  I+LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 236

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 119/233 (51%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   +   G   +E     + D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRATS-SVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGNDQ 122

Query: 123 AQS-------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           A +             ++  G + ++++   V V G  + +  KE+ ++E L       L
Sbjct: 123 ASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRVL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+   ++ ++      + K +DV I +LR K+        ++ TV G GY   
Sbjct: 183 TRGQLIDRIWGADYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGYKFE 235


>gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
 gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201]
          Length = 226

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+++L+  +  +L  E F+V V   G   +        D ++LDL L    G E
Sbjct: 3   QILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGADLVLLDLMLPGQSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+   +  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCKQIRQRS-NVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRRRAE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S +  G + ++++   V V G  + +  KE++++E+L       LT+   ++ +
Sbjct: 122 PEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+        +I TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGYKFEP 226


>gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 239

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A+ + + L      +     G+  +      ++  I+LD+ L ++ G +
Sbjct: 4   RILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  +    + +L+  +S  D+V GL+ GADDY++KPF+  EL AR+R+ +R+   
Sbjct: 64  ICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVHV 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +  G L +      V +    + LT  E++++  L+       ++ 
Sbjct: 124 LQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELVLTATEFELLHHLANHPGQVFSRS 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++          ++  I +LR KL   A     ++TVWG GY      
Sbjct: 184 QLLESVWGYHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFNPQG 236


>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 224

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 226

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYDGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
 gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 110-3]
 gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli H263]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDCMVQTVRGTGYRF 225


>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 628

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 125/224 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++  ML S+ + V + + G+ G E  +   +D ++LD+ L  + G 
Sbjct: 1   MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR      P+ +L+  ++ +DKV+GL +GADDY+ KP +  EL ARIRA++RRS 
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    + ++     V   G  + LT KEY ++ELL   +  T + +  L+ L+ 
Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    +   I  LR+KL  A  G  +IETV+G GY L +N
Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score =  108 bits (272), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 2/124 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +  +I+ +L+         D      +  +    D ++LD+ +  + G E
Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  ++  +  + + +  Q+GADDY++KPF   EL  RI   ++R+
Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616

Query: 120 RGHA 123
           +  A
Sbjct: 617 QNLA 620


>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +   DG+   +    + I+LD  +    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+  +++   PV +L+     EDKVRGL++GADDYI+KPF+ +EL AR+ A++RR 
Sbjct: 64  FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V  +   + +   E++++           ++E  LN++
Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225


>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 248

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 241


>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 226

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L  + F V     GE+ ++   +  +   IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  S  +D+++G   G D+YI+KPF+ + LVAR+ AI+RRS 
Sbjct: 65  QVCREIRQ-YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSN 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  G + +N  A  V + G  + L+ KE++++      +   L++E  LN+++
Sbjct: 124 VLAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     + + ID  + KLR KL        YI+T+WG GY    N
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGAKG---EYIKTIWGMGYKFEVN 225


>gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
 gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Mitsuokella multacida DSM 20544]
          Length = 230

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A      L++ +F V +   G  G+E      FD +ILDL L  I GF 
Sbjct: 3   KILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLMLPGIDGFN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115
           V R LR   +  PV I+S   +  DK+RG   GADDY++KPF+  ELVAR++A       
Sbjct: 63  VCRRLREE-LDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + R      + +  G L++   +  V   G  IHLT +E++++  L   +    ++E   
Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V I ++R+K+        YIETV G GY  
Sbjct: 182 ERIWGLDAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGYRF 227


>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 224

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   +      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKITRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
 gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
          Length = 232

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+A+  S+E  L+ E +       G + +        D +ILD+ +  + G  V
Sbjct: 7   VLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVMMPGVDGLGV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR     TP+ +L+      D+V GL +GADDY+ KPF  +EL+ARIRA++RR+   
Sbjct: 67  CRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAPT 126

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A+ LI  GDL ++  A+ V   G  + L+  E+ ++ELL+      L      + 
Sbjct: 127 TGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTIYDR 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     PE K + V+I  LR+KL         I+TV G GY LR 
Sbjct: 187 IWGYDFGPESKNLAVYISYLRRKLEPEGTTP-LIQTVRGVGYTLRP 231


>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 15/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   I+  L++  + V   + G+  +   +  E D ++LDL L ++ G E
Sbjct: 3   KILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEA-EIDLVVLDLMLPEVDGME 61

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R +R  K     P+ +L+      +++ GL+ GADDY++KPF+  ELVARI+AI RR 
Sbjct: 62  VCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRRI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +I  G L +++    V +   +I LT KE++++  L + +   L+++
Sbjct: 122 KELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLSRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L  ++      + + +DV I +LR+K+         I TV G GY  
Sbjct: 182 LLLEKIWGYEYAGDTRTVDVHIRRLRQKIKADQ-----IVTVRGVGYKF 225


>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
           ATCC 13950]
          Length = 239

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V     G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238


>gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 243

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  LA+ ++L L + NF+V      +   +  +   FD I++D  L D  G  
Sbjct: 14  KILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTLPDGDGLM 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR A   TP  +L+   S  D V GL+SGADDY++KPF+  EL AR++A++RR   
Sbjct: 74  LCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGHQ 133

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H +  +    +++N D + V     ++ LT +E+ ++  ++       ++   L  ++
Sbjct: 134 TEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                     ++  I +LR KLS+       ++TVWG GY     
Sbjct: 194 GYSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKFSPP 238


>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
 gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
 gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
 gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
           18RS21]
 gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
          Length = 223

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  SI  +LK ++++V     GE+ ++     E+D IILD+ +  + GF
Sbjct: 1   MKILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             L+ LR       + +L+   ++ED++ GL  GADDY+ KPF   EL+ARIRA++RR+ 
Sbjct: 61  TFLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  +   I   D+++NL  K V    + I LT KEY+++E L+  ++  L++     H++
Sbjct: 121 RQVSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D     E  IIDV I  LR+KL N   G + I+T  G GYV+
Sbjct: 181 DYDYYGESNIIDVLIKNLRRKLDNNRDG-SLIKTKRGLGYVI 221


>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 279

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 54  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 114 FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 275


>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 225

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L+ E F+V     G + + L + +  D ++LD+ +    GFE
Sbjct: 4   QILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPDGFE 63

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           + R L  +      PV +L+      D+V GL  GADDY+ KPF+  EL+ RIRA++RR 
Sbjct: 64  ICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRRG 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R     ++    + +  DA T E  G  + LT  E++++E L     +  T+E  LN +
Sbjct: 124 TRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR KL +AA     +ETV G GY ++E
Sbjct: 184 WGYSFEGYARTVDTHVRRLRAKLGHAAS---MLETVRGVGYRIKE 225


>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
           PHOP [Mycobacterium bovis AF2122/97]
 gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 94_M4241A]
 gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T92]
 gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T17]
 gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis 210]
 gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN R506]
 gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN V2475]
 gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
 gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
           REGULATOR PHOP [Mycobacterium bovis AF2122/97]
 gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
           regulator phoP [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis C]
 gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis str. Haarlem]
 gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis F11]
 gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
           regulator [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T46]
 gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CPHL_A]
 gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 605]
 gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis K85]
 gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T17]
 gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis 02_1987]
 gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis T92]
 gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis EAS054]
 gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis GM 1503]
 gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
           phoP [Mycobacterium tuberculosis T85]
 gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu001]
 gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu002]
 gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu003]
 gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu004]
 gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu005]
 gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu006]
 gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu007]
 gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu008]
 gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu010]
 gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis CDC1551A]
 gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis W-148]
 gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis KZN 4207]
          Length = 247

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 202 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 246


>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
 gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Nitrosococcus halophilus Nc4]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +  +L  E +N       E   +       D I+LD  L  I G ++
Sbjct: 5   ILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLPGISGVDL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+     EDKVRGL  GADDYI+KPF+  EL+AR++A++RRS 
Sbjct: 65  ARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRRSA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ ++    L ++  +  + + G  + +   E++++           ++   ++H++
Sbjct: 125 PLLSREVVEVDGLKLDPSSHRLSIGGLPLEMGPTEFRLLHFFITHPERVYSRGQLIDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G    I+TV G GY  
Sbjct: 185 GDNVYVEERTVDVHIRRLRKSLEP-SGHDRLIQTVRGVGYRF 225


>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
 gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +   V   G  G+   +  + D I+LDL L  + G EV
Sbjct: 4   VLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ A+++   PV +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RR  
Sbjct: 64  CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ + I  G L ++++   V V G  + LT  E++++  L+ R     ++E+ L +++
Sbjct: 124 PAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +D  + +LR KL  A      I+TV G GY L E+
Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKLGAAG---ELIKTVRGFGYKLEES 225


>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 231

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  +   + L L++  F+V   D G    +L K    D  I D+ + ++ GFE
Sbjct: 4   KILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R+   S P+  LS M++  DK+ GL  GADDYI+KPFN  E+VAR+++ +RR   
Sbjct: 64  LTKRVRITS-SIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +   +  L+  G+L+++    T++  G  I LT  E++++  L  +     TK    
Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +     E +   + V I KLR+KL + +    Y++TV G GY + ++
Sbjct: 183 ERINGEYFENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGYKIEKS 231


>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 223

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  IE+ LK E F V     G++G+   K+  +D IILDL L  + G E
Sbjct: 4   KILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV GL  GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIREFS-EVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + Q   V  DL +N     V      I L+ +E+++++ L L K   L+++  L +++ 
Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   I+D++I  LR K+ +    + +I+TV G G++ +
Sbjct: 183 FEYIGNDNILDLYIKYLRDKI-DKPYERKFIQTVRGLGFIFK 223


>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
 gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  NF V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 229

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 225

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED++ LA  +   L+ E +       G +G+EL +    D I+LDL L  + G
Sbjct: 1   MKTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            EV + L+ ++ +   PV +L+      D+V G + GADDY+ KPF+  EL+ R++A++R
Sbjct: 61  MEVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLR 120

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RS        +I  G ++++ +   V V+G  + LT  E++++  L+ R     ++++ L
Sbjct: 121 RSLPDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      + + +D  I +LR KL  A      I+TV G GY + E
Sbjct: 181 KNVWGYNYVGDTRTVDTHITRLRTKLGQAG---ELIKTVRGFGYKMEE 225


>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  273 bits (699), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E         G+  +   +    D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL++GADDY+ KPF  +ELVAR+RA +R +  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++   +V   G  + LT  E++++  L+ +     T+E+ L  ++  
Sbjct: 123 RPPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGYR 221


>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 221

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD A+   +   L+ E + V     G + +          ++LDL L  + G+E
Sbjct: 3   RVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQAS--LVVLDLMLPRLSGWE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+     E+++RGL  GADDY++KPF+  E+VAR+RA++RRS  
Sbjct: 61  VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSGL 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  +  G+L +    +   + G  + L+  E+ ++  L+       ++E  L  ++  
Sbjct: 121 KAE--LAFGELVIRPREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVWGT 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++DV I  LRKKL        YIETV G GY  +E 
Sbjct: 179 DFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRFQEE 221


>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 232

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 232


>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
 gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
          Length = 248

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G E
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  + + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS  
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S++  GDL ++ D+  V   G  I LT  E++++  L       L+K   L+ +
Sbjct: 138 SEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAA 242


>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 219

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 110/221 (49%), Gaps = 6/221 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL++D+  +   + + L +  +     + G+D + + +   +D +ILD+ + ++ G EV 
Sbjct: 2   LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R      P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR     
Sbjct: 62  KEIRKTS-DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQE 120

Query: 124 QSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +       G + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++  
Sbjct: 121 EQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 181 DYAGSTRTVDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 218


>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
 gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
           actinobacterium PHSC20C1]
          Length = 266

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +       L++  F V     G   ++  + +  D I+LD  L  I G E
Sbjct: 41  RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+ M S ++++ GL++GADDYISKPF+  ELV R+++I+RRS G
Sbjct: 101 VCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    G+ +++  A ++   G  + LT +E+ ++  L        ++E  L  ++
Sbjct: 160 DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVW 219

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++  + V + +LR+K+         + TVWG GY L
Sbjct: 220 GWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260


>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
           [Spirochaeta thermophila DSM 6578]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   +   L+ E + V  T  G D +E  +    DAIILDL L  + G 
Sbjct: 1   MTILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR    +   P+ +L+  S   D V GL+ GADDYI+KPF+   L+AR++A+++R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    G +   IV G+L ++    +V V+G  + L+  E+ ++  L+       +++  +
Sbjct: 121 THPPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQII 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +         + +DV I  +RKKL +A   ++YI+TV G GY L+ 
Sbjct: 181 DAVKGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQP 225


>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
 gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
          Length = 239

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 133/231 (57%), Gaps = 11/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   +++ L+ E++ +   D G+D +++   Y++D I+LD+ +    G 
Sbjct: 5   IKVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPGKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R+AK +TP+ +L+      ++V+G + GADDYI KPF+  E+V R++A++RR+ 
Sbjct: 65  EVCKEIRMAK-ATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAS 123

Query: 121 GHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           G  Q           I   +L+++ ++  V + G +++LT KEY ++  ++       ++
Sbjct: 124 GGEQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVL 221
           E  L  ++      +++ ID  + +LR+KL + +      I TVWG GY L
Sbjct: 184 EALLKEIWRYDFVGDLRTIDTHVKRLREKLYDISEEAGKMIVTVWGLGYKL 234


>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 242

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ +  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 75  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      +++   GD+ +N+  + V +    + LT +E++++ELL+  +   L  E    
Sbjct: 134 SGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIYE 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+T+WG GY + ++
Sbjct: 194 RVWKEKAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241


>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
 gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  IEL L+++ ++VY    G++ ++     + D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  QILKQIRE-KYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            + +       +I  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +        + V I  LR+K++   G  ++I+TVWG GY + E
Sbjct: 180 FEKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229


>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 234

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA      L+     V     G  G++      FD ++LDL L    G EV 
Sbjct: 10  LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR ++   PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRA+VRR+ G A
Sbjct: 70  RELR-SRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGRA 128

Query: 124 QSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L V+  A+ V + G  + LTG E+ ++  L+ R    L +E  +     
Sbjct: 129 GPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAGG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E   + +DV + +LR+KL +       I+TV G GY+L
Sbjct: 189 SAEEAFDRSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229


>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 238

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DAIILD+ +  + GF 
Sbjct: 13  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS G
Sbjct: 73  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q    S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 193 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 237


>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 224

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD A+A ++   L +E + V     G  G++      FD ++LD+ +    G+
Sbjct: 1   MRVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A++ TPV +L+      D+      GADDY++KP++   LVAR+RA+ RR  
Sbjct: 61  EVVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G LS++  A  V+     + LT +E+ ++E L   K   +TK   ++ ++D
Sbjct: 121 PERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  +++V+I  LRK++ +A  G   I+TV G GY L ++ 
Sbjct: 181 VNYTGDENVVEVYISYLRKRI-DAPFGCKSIQTVRGVGYRLDDDG 224


>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 224

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 221


>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TP  +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGNQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 240

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  LK ++F V   +  E      +   +  ++LDL L    G  
Sbjct: 7   KILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY++KPFN  EL+ARIRA++RR   
Sbjct: 67  ICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAVLRRQAK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H       +++++  G  ++NL  + +   G+ I LT  E+ +++ L       L+++  
Sbjct: 127 HIPGAPSNSETVVSFGRFTLNLATREMTDDGNPISLTSGEFAVLKSLVEHARQPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ +        YI+TVWG GYV   +  +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEADPAHPRYIQTVWGVGYVFVPDGGE 239


>gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ +    K  I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVLEP 221


>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A     T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 247

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIREKH-SLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 140 NQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  +       + V I +LR K+        +I+ VWG GY + +
Sbjct: 200 ESVWKEKAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 247


>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++++D+ +   I+L+L +E F V  +  G + +++   + +  I LD+ L  + G+
Sbjct: 4   IKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVMLPGLDGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R    + P+ IL+       K+ G + G DDYI+KPF+ +E+VARI+A+++R+ 
Sbjct: 64  TVCKKIRERS-NIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRAN 122

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S + T  + +N   + V +    + LT KEY ++      K+   T+E  L  
Sbjct: 123 IIPLSEESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  I ++R+KL      K YI TVWG GY  +
Sbjct: 183 VWGYDFYGDLRTVDTHIKQIREKLGEY---KKYISTVWGVGYKFK 224


>gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21]
 gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 133/226 (58%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRKFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  G++ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGEVRLDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A+
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPAE 221


>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 230

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +   ++  L      V      E  ++  K    D I+LD  L  + G ++
Sbjct: 5   ILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLPGMSGIDL 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +L+      DKV GL +GADDYI+KPF+  ELV+RI+A++RR  
Sbjct: 65  CRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L ++  +  V+ +G  + L   E++++           T+   L+ ++
Sbjct: 125 PQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRPQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L   +G    ++TV G GY  
Sbjct: 185 GDDVFVEERTVDVHIRRLRLALEP-SGHAALVQTVRGSGYRF 225


>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 230

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++++A   +  L+  +F V V + GE G       +FD IILDL L  + GFE
Sbjct: 4   KILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 64  ICRQVRDQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 QEIWDMESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRFK 229


>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 253

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 121/239 (50%), Gaps = 9/239 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G++ +E  +  + D ++LD+ +  + G+ V
Sbjct: 16  ILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDGYGV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 76  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKD 134

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        +I  GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 135 SVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEILK 194

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
            ++    E   + +++DV I +LR KL +       I T  G GY+ +        E L
Sbjct: 195 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVDAVASEAL 253


>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
           DSM 45100]
          Length = 235

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  ++  +++ LK + F+V   D G+  +++   Y+ DA ILD+ +  + GF 
Sbjct: 10  KVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDGFS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I   DL+++ D   V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     +  +++ ++  LR+K+         I TV G GYVLR+ 
Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKIDTD--DPRLIHTVRGVGYVLRKP 233


>gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR     TPV  L+    IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 61  GILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    + + +L ++L  + V   G RI LT KE+ ++ELL  RK   L + +  + ++D
Sbjct: 121 NHEPETLRSANLELDLLRRRVNRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+V + +LR K+ +       I TV G GYVL 
Sbjct: 181 MNFDSDTNVIEVAVRRLRVKV-DDPFEPKLIHTVRGMGYVLE 221


>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
 gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
          Length = 219

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL LK E++NV +   G  G++      +D IILDL L +I G ++
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLKI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +++I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 236

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E ++V     G          + D I+LD  L  + G +
Sbjct: 4   KILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R +  S P+ +++  S   DKV GL+ GADDYI+KPF+  E++AR++A +RR   
Sbjct: 64  VCKKIRQSS-SVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRRMGF 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +    S I  G+  ++L +  +   G  I+LT +E+++I  L+       T+E  L
Sbjct: 123 VDQEQAIISSTIEFGEFIIDLRSFELRRNGCVINLTLREFELISFLAQHPGEVFTREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRENAKDE 228
             ++      +V+ +DV + + R+K+         YI T  G GY        E
Sbjct: 183 ERVWGYEYYGDVRTVDVTVRRTREKIEGDTQNNYKYILTRRGVGYYFENPGATE 236


>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
 gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
          Length = 242

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+  +      ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 236

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   ++L  + E F V V   G+  + +      D +ILD+ L    G  
Sbjct: 6   KVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R+LR  ++  P+ +L+      D+V GL+ GADDYISKPF+  ELVARI+A++RR++ 
Sbjct: 66  LCRSLREIRM-IPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRTQA 124

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G     +    L ++ D + V V    I LT +E+ ++  L+       T++  L  +
Sbjct: 125 VEGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLAAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      + + +DV I +LR KL   +    Y+ TVWG GY      K+
Sbjct: 185 WGYDYFGDQRTVDVHIRRLRTKL--VSLQHEYLSTVWGVGYQFTPPVKE 231


>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
           enterocolitica W22703]
          Length = 279

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 54  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 113

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 114 FIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 173

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 174 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 233

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 234 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 275


>gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
 gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1272]
 gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH1273]
          Length = 224

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+++LA  +EL LK E + V +   G  G++      +D I+LDL L  + G E
Sbjct: 3   QILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLMLPGLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR   
Sbjct: 63  VCRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ +
Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 182 WGYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 225

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIHTVRGVGYVLEP 221


>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 272

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ++++ED++AL   ++  L  E + V     GE+   L +    D I+LD  L  + 
Sbjct: 42  MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLS 101

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R LR      + P+ +++      D++RGL  GADDY++KPF+  EL+ARIRA++
Sbjct: 102 GIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVM 161

Query: 117 RRSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR R    + L+  GD+ ++  A  V      +HL   EY++++ L        ++E  L
Sbjct: 162 RRIRPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLL 221

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      E + +DV + +LRK L N  G K+ I TV   GY L E 
Sbjct: 222 DTVWGSDVYVEARTVDVHVGRLRKAL-NDKGEKDPIRTVRSAGYSLDEQ 269


>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 225

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +A  IEL L +E +   V   G  G+   +    D +ILDL L  + G EV
Sbjct: 7   VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ IL+   +I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 67  ARRIRKTS-NTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-E 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 ++DV+I  LR+KL    G +  I TV G GYVLRE 
Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225


>gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 224

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   +   L+   + V     G++G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDKDLNRQLVTALEQAGYAVDRAFDGDEGHFLGDTEPYDAVVLDIGLPKKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV+G  +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  SVLEQWRKAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  A  V V G+ + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   ++VF+ +LRKKL         I+TV G GY+
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGVD-----VIQTVRGLGYM 215


>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 232

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   +   L+ E + V     GE  ++L    + D +I+D+ +  + G E 
Sbjct: 6   ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + ++  K+  P+ ILS    + DK+ G + G DDY +KPF+  EL  R++A++RRS+  
Sbjct: 66  SQKIK-MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     ++   +  +    + V + G  + LT KE+ M+ L++   N   ++   L  +
Sbjct: 125 PEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++   E +   + V I +LR+K+   A     I+TVWG GY      +
Sbjct: 185 WESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232


>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
 gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
          Length = 246

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD+ ++  +   L  E + V +   GEDG+          +++DL L  + GFEV
Sbjct: 16  ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      P+ ++S   S  DK+  L  GADDYI+KPF+  ELVAR+++ +RR    
Sbjct: 76  CRQVRQQS-EVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++    L++N + + VE  G  + LT KE++++  L+       +KE   N 
Sbjct: 135 NGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNR 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   D  +++ + V I  +R+KL + +    +I+TVWG GY  
Sbjct: 195 VWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238


>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 92/224 (41%), Positives = 143/224 (63%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+K LA++++  L+ E + V V   GE+G  L + Y +D IILD+ L  + G 
Sbjct: 1   MKILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + TP+ +L+   S+EDKV+GL SGADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  ELLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I   DL ++L+ K V+  G+ I LT KE++ + LL+L KN  ++KE  ++ LY 
Sbjct: 121 ESKTSFIKIKDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  I+V I +LRKK+      K  I T+ G GY+++++
Sbjct: 181 TDRFVSINAIEVLINRLRKKIDKDYPLK-LIHTIKGFGYMIKDD 223


>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
           BAA-613]
          Length = 234

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  IE+ L S+ + V+  +    G+E+    E   ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIMMPGMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S+  A + I    +++N D   V V    I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           N1-067]
 gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
           S4-171]
          Length = 238

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 126/234 (53%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ L+ EN+ +     G++ +++     ++ I+LDL +    G E
Sbjct: 6   RVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPGKDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K STPV +L+      ++V+G + GADDYI KPF+  E+V R++A++RR++ 
Sbjct: 66  VCRELREYK-STPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQ 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         +I    L ++ +A  V V+G  I LT KEY ++  L+   +    +E 
Sbjct: 125 TSEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRES 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ ID  + +LR+KL + +      I TVWG GY      +
Sbjct: 185 LLKEVWRYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEVPEE 238


>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F + V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V   G  + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
 gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
           excrementihominis YIT 11859]
          Length = 260

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 117/238 (49%), Gaps = 8/238 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L +  F+V V +  E    L     FDA++LD+ +    G  
Sbjct: 21  RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R +  +TP+ +L+      D++ GL+ GADDY+ KP+N  EL+AR+ AI+RR   
Sbjct: 81  ILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRREP 140

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G+ S++L  + +      I LT  E+ +++  +      L+++ 
Sbjct: 141 VDPPGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRDK 200

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            +        E   + +DV + +LRK +        Y++TVWG GYV   +   +  +
Sbjct: 201 LMEMARGREYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVFIPDGASDAQD 258


>gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301]
 gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301]
          Length = 227

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRIL++EDDK +   +   L+     V   D G DG+ +     FDAIILD  L   I G
Sbjct: 1   MRILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR     TPV  LS +  ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRG 120

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G    + +  GDL ++L ++ V+  G +I L  +E++++E L       +T+ M L  +
Sbjct: 121 KGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I +LR+K+ +       + TV   GY+LR
Sbjct: 181 WDYHFDPQTNVIDVHISRLRQKI-DKPFDTPLLHTVRNAGYMLR 223


>gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649]
 gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649]
          Length = 231

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+KALA +I   L +E F V V   G  G  L     +D I+LD+ L    G+
Sbjct: 1   MRVLLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K+  P  +L+      D+    + GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  DVLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L ++ + +TV   GH I LT KE+ +++ L       L+K   L++++D
Sbjct: 121 PARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I++V++  LR+K+  A G  +  ETV G GY L
Sbjct: 181 QAFDGSDNIVEVYVGYLRRKIDQAFGVTSL-ETVRGMGYRL 220


>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Psychrobacter sp. 1501(2011)]
          Length = 240

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59
           +IL+IEDD  LA  I   L    + V+    G++G+++   K    D IILDL L D+ G
Sbjct: 4   QILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q       +  G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
 gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  ++   L  E +   V   G D +E    Y  D I+LD+ +  + G  
Sbjct: 14  RILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R A+ + P+ +L+   ++ D+V GL +GADDY+ KPF  +EL AR+RA++RRS  
Sbjct: 74  AARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSY 133

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +         ++   DL ++L  + V      + LT  E+ ++E+L       LT+E 
Sbjct: 134 AVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVLTREQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR  + +
Sbjct: 194 ILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLRSGSGE 246


>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 242

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEADPKEPKFIQNVWGVGYKIED 242


>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
 gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
           15053]
          Length = 231

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  + L L++ENF V+      D ++  +    D  ILD+ + D+ G E
Sbjct: 4   KILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      PV +L+      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  LCRNIREQ-YRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G  + +IV   L +N+      +    + LT  E+ ++ +L  +K   ++ E   
Sbjct: 123 YNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEELF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++          I V I  LR+K+ ++     YI+TVWG GY + 
Sbjct: 183 HEIWNDEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGYKIE 230


>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
 gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++A+A   +  L+   F V + + G+ G+E     ++D IILDL L ++ GF+
Sbjct: 3   KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K + P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    + ++  A+ + V G     T KE+ ++  L+   N   TK    
Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
 gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
           BH72]
          Length = 236

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L     +V      E    L +    D ++LD  L  + G + 
Sbjct: 5   ILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMSGIDF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL++GADDYI+KPF+  ELVARI+A++RR  
Sbjct: 65  ARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRA 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +  G L ++     V      + L   E++++  L        ++   L+ ++
Sbjct: 125 PQATEDAVELGGLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L  +A     I+TV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRCALEPSAHDA-LIQTVRGSGYRF 225


>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 222

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 133/224 (59%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  ++  ++  L+ E F V +   G+ G+++    E+D +I+D  +  I G 
Sbjct: 1   MRILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A  S P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  +RR+ 
Sbjct: 61  EVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  G ++VN     V  +   I LT KE+ ++E L+  K+   T+   + H+ D
Sbjct: 121 PESDA-ITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  IIDV+I  LRKKL + +G  N I+T+ G GY++RE+
Sbjct: 180 MHFDSDTSIIDVYINFLRKKL-DCSGCGNIIQTIRGVGYIIRES 222


>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
 gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
 gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
           273-4]
 gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 254

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V     G    +L +   F  ++LDL L    G  
Sbjct: 13  RILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDGIS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR      P+ +L+      D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 73  ICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  H   ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 133 ELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +      E
Sbjct: 193 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDEAEVEAAKSE 252

Query: 235 T 235
           +
Sbjct: 253 S 253


>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 232

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +   IE  L+ ++++V     GE+ + L    +FD I+LDL L  I G +
Sbjct: 4   RILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR  R +    PV I+S   S  DK  GL  GADDYISKPF+  EL AR++A +RR   
Sbjct: 64  LLRHFRESS-KVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S+     +I   DL ++L + +V+V+GH + LT KE+ +++LL    +   TKE 
Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++        +I+V I +LR+K+        YI T+WG GY +
Sbjct: 183 IYQFIWEDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGYKM 230


>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 228

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  ++ ++ L L  E+F+V     GEDG++L +    D ++LDL L  I G  
Sbjct: 6   RVLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLPGIDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +++  +   D + GL++GADDY++KP    EL ARIRA++RR+  
Sbjct: 66  VCRRVREHG-DLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTAS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L +  D + V   G  +HLT  E++++  L+  +   +T+E  L  ++  
Sbjct: 125 ARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWGH 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + +++DV I +LR+K+       + + TV G GY +    
Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGYRIAPEP 228


>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D+K +   +    K  NF V     GED ++  +  +FD ++LD+ +    GF+
Sbjct: 3   KVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +++      +K+ GL+ GADDYI KPF+  E++ARI AI+RR   
Sbjct: 63  VCREVRKFS-NVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITP 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++ +    +L ++L+  TV++    I LT KE +++  L+  +N   T+E  L+ +
Sbjct: 122 KNDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +D  I +LR K+ N    K  I+T+WG GY  
Sbjct: 182 WGFDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGYKF 224


>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 237

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I++ LK E ++    + GE+ + +    + D IILD+ +  + G E
Sbjct: 5   RILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKVNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  +   P+ +LS  S   DK+ GL +GADDY++KPFN  ELVAR+R+ +RR + 
Sbjct: 65  ACLKIREER-EMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          +++   ++S+NL+   V   G  I LT  E+ ++ LL   +    
Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + E   N ++          + V I K+R+K+        +I+TVWG GY +
Sbjct: 184 SIENIYNSVWKQEFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGYKI 235


>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 239

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR A    PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A+ ++  G   +NL  + +   G  + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSTAEKVVSFGSYQLNLATRELSRDGDPVALTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +N           + IDV + +LR+ L        Y++TVWG GYV   +   E
Sbjct: 186 MNLARGREYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVFVPDGDCE 239


>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 235

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D+K +   I  +L  E  + V       DG+      + D +ILD+ L D  G+
Sbjct: 7   KVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIMLPDGEGY 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RRS 
Sbjct: 67  DICKQIRDVS-HVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A+ +I  G   +N     +   G  I LT KE  ++       N  ++KE    
Sbjct: 126 YLQPSQAEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          + V I +LR+K+ N+     ++ TV G GY   
Sbjct: 186 TVWGEDFFGSDNTVMVHIRRLREKIENSPSTPEFLVTVKGLGYKFV 231


>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 234

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +   LKSE F V +   G+  I+     EF+  ILD+ L D+ G E
Sbjct: 3   KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  K S PV +L+   +  DKV     GADDYI KPF+  EL AR++A++RR+ G
Sbjct: 63  VLQYIRR-KTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      ++++  G L +N D   V+V+G+ I L  KE+ +++ L+ R N  +T  
Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V I +LR K+         ++TV G GY L 
Sbjct: 182 QIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231


>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Burkholderia ubonensis Bu]
          Length = 227

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G+   +  ++D ++LD+ L    G+
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+ M  + D+V+GL+ GADDY++KPF+  EL ARI++++RR +
Sbjct: 61  TLLQNLRRSK-STPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 233

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L +E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GD+ ++ D   V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N  G  + I TV G GY L E
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLINPGGEPDPIRTVRGAGYALDE 227


>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 226

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 223


>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 243

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 14/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A ++   L +E + V V   G   ++       DA++LD+ L  I G EV
Sbjct: 18  ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLEV 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R ++     TP+ +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 78  TRRIQADHP-TPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVERA 136

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A   +V GD++++   + V   G  +HLT  E++++ +L+    T LT+E  
Sbjct: 137 QQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRERL 196

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+KL     G + I TV G GY     A
Sbjct: 197 LAEVWDWADASGTRTVDSHIKALRRKL-----GPDLIRTVHGVGYAFEPPA 242


>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+  +   ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +       I TV G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFA-PKLIHTVRGMGYLM 221


>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis F11]
 gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis H37Ra]
 gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis GM 1503]
 gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
 gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
 gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
 gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
 gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
           TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
           tuberculosis H37Rv]
 gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
           tuberculosis H37Ra]
 gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis F11]
 gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 605]
 gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis 02_1987]
 gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis GM 1503]
 gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium tuberculosis T85]
 gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
           transcriptional regulatory protein) [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis SUMu011]
 gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis W-148]
 gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 230

 Score =  272 bits (698), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V +   G + +++      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++ 
Sbjct: 64  VCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKP 123

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL+++   + V     RI LT  E+ ++E+L       LT+   L  +
Sbjct: 124 EDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 184 WGFDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 230


>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 230

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   V   G+  +   + ++ D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRATS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGEA 122

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A+        ++  G + ++++  TV V G  + +  KE+ ++E L       LT+   +
Sbjct: 123 AEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++      + K +DV + +LR K+        ++ TV G GY 
Sbjct: 183 DRIWGADYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYK 227


>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 229

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED+  +   ++ +L+   +     +  +  +E       D I+LD  L    G +
Sbjct: 4   RVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLPGGSGVQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  +     P+ +++     EDKVRGL SGADDY++KPF+ +ELVARI+A++RR 
Sbjct: 64  LAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIRRV 123

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    I    L ++  +         + +   E++++           ++E  L+++
Sbjct: 124 TPTSSDELIEFNGLKLDPVSHRATANDEPLDMGPTEFKLLHFFMSHSERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +S   G  + I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAISR-FGHDSMIQTVRGSGYRF 225


>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
          Length = 269

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 14/244 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +A  +   L+     V     G + +        D I+LDL L  + G E
Sbjct: 12  RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+     ED++ GL+ GADDY++KPF+  ELV R+ +++RR+R 
Sbjct: 72  VCRRLRATGP-VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVLRRTRT 130

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      + ++  GDL+V+   +     G  + LT +E+ ++        T  ++E
Sbjct: 131 TAARATPAVAPRPVLRAGDLTVDTATRRATRAGAELGLTLREFDLLAYFLEHPRTAHSRE 190

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             +  ++      ++  + V + +LR K+         IETVWG GY        ET   
Sbjct: 191 ALMRRVWGWDF-GDLSTVTVHVRRLRAKIEQDPARPRLIETVWGVGYRFEPG---ETTAV 246

Query: 233 LETA 236
            + A
Sbjct: 247 ADAA 250


>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+++ + ++  ML+ E F V V   G DG++  +    D ++LDL L  +PG EV 
Sbjct: 2   LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR  + + PV +++   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR     
Sbjct: 62  RQLR-GRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEPE 120

Query: 124 QSLIVTGD---LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++     +   + +++D   V V G ++ L  KE+ ++E+L       LT+   ++ ++ 
Sbjct: 121 EAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+    G   Y+ TV G GY    
Sbjct: 181 ADYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFEP 223


>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 226

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
          Length = 249

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 118/238 (49%), Gaps = 9/238 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G++ +E  +    D ++LD+ +  + G+ V
Sbjct: 12  ILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDGYGV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 72  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIGKE 130

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 131 GAAGIPNSGVIQINEIRIDTNKRQVFRGDERIRLTGMEFSLLELLVGRSGEPFSRGEILK 190

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
            ++    E   + +++DV I +LR KL +       I T  G GY+ +   +    E 
Sbjct: 191 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVEAVAPES 248


>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
 gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 226

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
 gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH621]
 gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides DSM 2048]
          Length = 232

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +D+  +A  I + L+ E ++V     GE+ + + +    D +ILD+ +  +
Sbjct: 1   MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV R +RV K + P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +R
Sbjct: 61  DGYEVTRQIRV-KYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +S++  G + +NL+ + + V G +I LT KE+ ++ LL        +
Sbjct: 120 RFLTLNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E  L  ++          + V I  LRKK+         I+TVWG GY  
Sbjct: 180 VENILQQVWADDYYDGGSTVAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTF 230


>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
 gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
           12042]
          Length = 231

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +A +IE+ LKSE + ++    G + +E+    +   I++D+ +  + G +
Sbjct: 5   KILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    + P+ ILS  S   DKV GL  GADDYI+KPFN  E++AR+++ +RR   
Sbjct: 65  AIMHIRETS-NIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     ++I  G LS++L+AKTV ++G  + +T  EY+++EL     N   + +    
Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I ++R+K+        YI+ VWG GY + +N
Sbjct: 184 RVWNETSFQSENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231


>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
 gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           vulnificus CMCP6]
 gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
 gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Vibrio vulnificus MO6-24/O]
          Length = 229

 Score =  272 bits (697), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L +A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEDA-GHDKLIQTVRGAGYRFSTKA 229


>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 244

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 110/232 (47%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +A  +   L+   F V     G   + L      D ++LDL L  + G EV
Sbjct: 15  ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLPGMDGLEV 74

Query: 63  LRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116
            R LR   +   PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++     
Sbjct: 75  CRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRGGG 134

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   +    + ++  A+     GH + LT +E+ ++  L       + +E  + 
Sbjct: 135 GAGERRAGPELAAAGIVLDPGARRATKDGHELALTLREFDLLAHLMRHPGEAIGRERLMQ 194

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++      ++  + V + +LR K+ +       I+TVWG GY    ++ +E
Sbjct: 195 DVWGWEF-GDLSTVTVHVRRLRGKIEDDPARPRLIQTVWGVGYRF--DSPEE 243


>gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator
           [Escherichia coli ETEC H10407]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A   TPV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 222


>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
           X514]
 gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
           [Thermoanaerobacter sp. X513]
 gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X514]
 gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X561]
 gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter sp. X513]
          Length = 234

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L++  + V  ++ G++G++     + D +ILDL L D+ G E+
Sbjct: 5   VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR++
Sbjct: 65  CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +    +I  GD+ ++     V  +G  + LT KE+++++LLS      LT++  L+ 
Sbjct: 125 QPDEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      E + +DV I  LRKK+ +      YIETV G GY L +  +
Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLNDKGE 233


>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   +   L+ E ++V  T  G D +E  +    DAIILDL L  + G 
Sbjct: 1   MTILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGL 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR    +   P+ +L+  S   D V GL+ GADDYI+KPF+   L+AR++A+++R
Sbjct: 61  EVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120

Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R   G +   IV G+L ++    +V V+G  I L+  E+ ++  L+       +++  +
Sbjct: 121 TRPPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQII 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +         + +DV I  +RKKL +A   ++YI+TV G GY L+ 
Sbjct: 181 DAVKGEDYPVTERAVDVQILSIRKKLGDA---RDYIQTVRGVGYRLQP 225


>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
 gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           orientalis CIP 102891]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 236

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +N+ V     GE  ++L   +  D +ILD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   +    V +L+ ++   DK++G + GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEM-QDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  GDL ++   + V +   +I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   E E +++DV I ++RKK+         I+T+ G GY+      +E 
Sbjct: 184 WDYEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFDRRGHEEP 234


>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 12/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+ ++   I   L    ++V V   G+ G+++     F  IILD+ L  + G 
Sbjct: 1   MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V +ALR  +++TP+ +L+ + S E+ V GL SGADDY+ KPF + EL+ARIR+++RR+ 
Sbjct: 61  AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          +++   DL ++L+ K+    G  I LT  EY+++E +       L
Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   L +++        K++DV++  LRKK++        I+TV G GY+L+E 
Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRK-DQPALIQTVVGMGYMLKEE 234


>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
           WAL-14163]
 gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A   +  L+   F V + + GE G++     +FD +ILDL L  I GFE
Sbjct: 3   RILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  E+VAR++A + R   
Sbjct: 63  ICKKVREVK-NTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V + G   + T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 SKIWDMESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  ++  L+ E ++V V   GE+G+      + D ++LD  L  + G EV
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + PV +L+      D+VRGL +GADDY++KPF+  EL+ARIRA++RR R
Sbjct: 65  CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +  GD+ ++  A  V   G  +HL   E+++++          ++E  L+ ++
Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L N     N I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEESANPIRTVRSAGYSL 225


>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
 gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
          Length = 248

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G + +E     E D ++LD+ +  + G+ V
Sbjct: 11  ILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVMMPRLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEKD 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli]
 gi|47716815|gb|AAT37590.1| SilR [Escherichia coli]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYMLE 222


>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
 gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CDC1551]
 gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis C]
          Length = 276

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 51  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 110

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 111 EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 171 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 230

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        I+D++I  LRKK+   +  +  I TV G GY+LR  
Sbjct: 231 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPP 275


>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
 gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
          Length = 238

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 11  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 71  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S +    L +N+      + G  + LT  E+ ++ +L       ++ E 
Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++           I V I  LR+KL++ +    YI+T+WG GY +
Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 238


>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
 gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A   +  L+  +F V +   GE G++L    +FD IILD+ L  + GFE
Sbjct: 3   RVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R R 
Sbjct: 63  ICKQIREKK-DIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRR 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    L ++  A+ V + G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 NKIWDMESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGYRFK 228


>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 252

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     GE+ +E       D ++LD+ +  + G+ V
Sbjct: 14  ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDGYGV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 74  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 132

Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I   DL ++ + + V   G RI LTG E+ ++ELL  R     ++   L
Sbjct: 133 HGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEIL 192

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 193 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 241


>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 236

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TP+ +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  RVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A   TPV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 222


>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 247

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRVREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 140 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247


>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   ++  LK+E + V V   G D I L    +F AIILDLGL D+ G 
Sbjct: 1   MRVLLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPDLNGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR A + TP+ +L+   +++DKV GL+SGADDY++KPF  EEL+ARI A++RR  
Sbjct: 61  QVCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRS 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G        +   DL +N +   V      I LT KE+ ++E         L++   L  
Sbjct: 121 GEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   ++DV+I +LR+K+ +       ++TV G GY L
Sbjct: 181 VWGYSADPLTNVVDVYIRQLRRKIDDD-YELKLLKTVRGFGYKL 223


>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 232

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L+ +   V     G++ ++L     +D I+LD+ L  + GFE
Sbjct: 4   KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +++R    + P+ +L+      DK+ GL+ GADDYI+KPFN  E+ ARI+AI+RR+  
Sbjct: 64  VCQSIREFS-TVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASI 122

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +++I  GDL ++   + + + G   +LT KE+ M+ LL        ++E
Sbjct: 123 GMAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++      + + +DV + +LR+K+        Y+ T WG GY
Sbjct: 183 DLLHTIWGTDYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229


>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
 gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T KE+ ++       N  L KE   
Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
 gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
          Length = 241

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSK 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPTQQEEEVTFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPATPRYIQTVWGLGYVFVPDG 237


>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 266

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 6/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A+ + + L+ E + V  +  G +G+ L +   +DA++LDL L  + G E
Sbjct: 25  RILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGLE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 85  ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEA 144

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+ +      +    L+++  A+   V G R+ LT +E+ ++   +   +   ++   L
Sbjct: 145 MARDVRADAGSLELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDLL 204

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           N ++  + E     ++  I +LR K+         I TVW RGY    + + +  +
Sbjct: 205 NAVWGYQHEGYEHTVNTHINRLRTKIEVDPAQPKRILTVWRRGYRFVADPQADAAQ 260


>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 231

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 126/229 (55%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +A  ++  L+ +   V     G++GIE  K    D I+LD+ + DI G+E
Sbjct: 3   KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  LS   S  D+++G   G DDY+ KPF+ +EL+ARI A +RR + 
Sbjct: 62  VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++L+   +++++L ++ V V+G+ I LT KE+ ++ELLSL      +KE  
Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++    E +   +   I  +R K+ N      YI+TVWG GY   +
Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229


>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A   +  L+   F V + + G+ G+      ++  IILDL L ++ GFE
Sbjct: 3   KILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKRVREEK-NIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 QEIWDMESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRFK 228


>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
 gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
           DSM 15981]
          Length = 235

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ L++EN +VY    GE+ +      +FD  ILD+ L DI G  
Sbjct: 4   KILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDISGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + +++R  + + PV +LS      DK+ GL  GADDYI+KPF   ELVAR++A +RR + 
Sbjct: 64  ICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKK 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A  +     L++N+      + G  + LT  E+ ++ +L  R+ + ++ E 
Sbjct: 124 YNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAEE 183

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++           I V I  LR+K+ +      YI+TVWG GY + E
Sbjct: 184 LFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKIGE 234


>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
 gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 244

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++DD  +   +   L  E F V + +  +    +      D I+LDL L    G  
Sbjct: 11  RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 71  ICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRPV 130

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +       +  G    +L  + +   G  I LT  E+ M++ L       L+++ 
Sbjct: 131 MEAPGAPSREAQSVTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPLSRDK 190

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +        YI+TVWG GYV   + 
Sbjct: 191 LAQLARGREFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVFVPDG 242


>gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 234

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E ++      G + +E  +  ++  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILLIEDD A+A      L+++ F + +   G+ G+E      +D +++D+ L    G
Sbjct: 1   MKHILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVMLPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+++R +R  K   P+ ++S      DK+RGL  GADDYISKPF+  ELVAR++A   R 
Sbjct: 61  FQIVREVRKKK-DIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARY 119

Query: 120 R-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                       S I  G L +  +   V ++G  I LT KE++++  L+  +    +K+
Sbjct: 120 ERLIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKD 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V + +LR+KL        +IETVWG GY L+
Sbjct: 180 ALFERVWGLDAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRLK 229


>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 225

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A     T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
 gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
           regulator, PhoP [Mycobacterium ulcerans Agy99]
          Length = 240

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR L+   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR   
Sbjct: 75  VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 195 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 239


>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 231

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL EDD  L  ++   L++E + V     G+  +       +D I+LD+ L    GF+
Sbjct: 4   RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR ++I  P+ +L+    + DKV GL+SGADDY++KPF   EL+ARI A++RR+  
Sbjct: 64  VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R         G ++V+     V   G  + L+ +EY+++  L      T+T+E  L  +
Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV +  LR+KL        Y++TV G GY L + 
Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229


>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 241

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + + LK + + V   + G   I+ C+ ++ DA+ILD+ +  + GF 
Sbjct: 15  KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  P   LS   S+EDK+ GL  G DDY++KPF+ EE+VAR++ ++RRS  
Sbjct: 75  LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A     S I   D+ ++ +   V   G+ + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     EV +++ ++  LR+KL    G K  I T+ G GYV+RE 
Sbjct: 195 VWNYDFGGEVNVVESYVSYLRRKL--DTGDKRLIHTLRGVGYVMREP 239


>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 227

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+++    E+D II+D  +  I G 
Sbjct: 1   MRLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+  L+   ++ED + GL +GA+DYI KPF  EEL+ARIR  + R++
Sbjct: 61  EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQL-RNK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L++N     V      + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 120 NRNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV+I  LR+KL  AAG  N I+T+ G GY++RE 
Sbjct: 180 IHFDSDTSVIDVYITFLRRKLE-AAGCGNIIQTIRGVGYIVREP 222


>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 235

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F+V ++  G++G  +    ++  ++LD+ L    GF 
Sbjct: 3   KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + RA+R   +  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVRKE-LDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G L +      V V G  +HL  +E++++  L+       +KE   
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++D         + V + +LR+K+        +++TVWG GY     A+
Sbjct: 182 DRVWDLDAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232


>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 227

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   + + L+  ++ V     G++ +        D I+LD+GL ++ GF
Sbjct: 1   MKILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+  L+      D + GL+ GADDY++KPF+  ELVARI+AI +RSR
Sbjct: 61  EVCRRIRQRS-EVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G L+++  A    + G  I LT +E  +++LL+       +K   ++H++ 
Sbjct: 120 ANGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +   + +D  +  LR K S A G    IETV G G  LR++ +
Sbjct: 180 AGSQVSDRTLDSHLRNLRGKFSEA-GNPELIETVHGAGIRLRDSGQ 224


>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  + H +   +++  F+V     G   +E+ + +  D ++LDL +  I GFE
Sbjct: 5   RILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGIDGFE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+        PV +L+      D++ GL+ GADDY+ KPF+  EL+ RIRAI+RRS
Sbjct: 65  VCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRRS 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A  + +  +  LSV+ +   + V G    LT  E++++          LT++  L+ 
Sbjct: 125 ATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  + E   + +D  + +LR+KL   A   + +ETV G GY  R
Sbjct: 185 VWAYQFEGYARTVDTHVRRLRRKLGPHA---DRVETVRGVGYRFR 226


>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
 gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
 gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
 gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
 gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
 gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
 gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
 gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
 gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
 gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
          Length = 244

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + + V V   G+   +L     F  I+LDL L D  G  
Sbjct: 11  RILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDEDGIA 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR    S P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 71  ICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQNR 130

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 131 ELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDKL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 191 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAE 243


>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 240

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ L        YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDGE 238


>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
 gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
           jeikeium K411]
 gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 230

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +LK E F V++   G   ++     + D I+LDL L  + G EV
Sbjct: 4   VLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +++   S  DKV GL+ GADDY++KP+   EL+ARIRA++RR    
Sbjct: 64  CRQLRQTS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRGGEV 122

Query: 123 AQSLIVTGDLSV-------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    L +       +++   V V G ++ +  KE+ ++E L       LT+   +
Sbjct: 123 EVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + K +DV I +LR K+         + TV G GY   
Sbjct: 183 DRVWGADYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGYKFE 229


>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 94/225 (41%), Positives = 143/225 (63%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  IEL L+ E FNV  +  G +G++L    ++D I+LDL L  + G E
Sbjct: 3   RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R AK  TP+ +L+   S+ DKV GL SGADDY+SKPF  EEL+ARIRA+ RR  G
Sbjct: 63  VCRRIRAAK-ETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEG 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A +++   +L V+LDA+TV     +I LT +E+ ++ +     N  LT+E+ L+ +
Sbjct: 122 KKEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     E  ++DV++  LR K+ +    ++YI+TV G GYV+R+
Sbjct: 182 WELGSYAETNVVDVYVRYLRNKI-DKPSEESYIQTVRGTGYVMRK 225


>gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 635

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 123/223 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD + + +I   L  + + V   + GE G+EL + + +D I+LD+ L  +   
Sbjct: 1   MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDRI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  +  TP+ +L+  +   D V GL++GADDY+ KPF+  EL+ARI+A+ RR +
Sbjct: 61  TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +N     V  QG  +HLT  EY ++EL         ++++ ++ ++ 
Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               P  + I   I  LR+KL      +N I+TV+G GY L E
Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGE 223



 Score = 92.6 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LI+DD      ++  L    FNV      +    + +    D +ILDL +    G  +
Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
            +A+R      S P+  LSG    E   + L  GAD Y+ K    EEL+
Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618



 Score = 39.5 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 28  YVTDLGEDGIELCKFYEFDAIILDLGL--TDIPGFEVLRALRVAKISTPVCILSGMSSIE 85
                 ++        +   +++DL L  +   G   L  LR  K + P  IL   + + 
Sbjct: 410 IAVSDLKEAKSFLTQTQPRGLVIDLDLLESREEGLIFLEQLRQEKTNLPFIILDTYNDLS 469

Query: 86  DKVRGLQSGADDYISKP-FNKEELVARIRAI 115
            ++   + G   ++ KP  +   L A I+ +
Sbjct: 470 YRLEIARLGKGLFLQKPLTSDRLLKAAIKVL 500


>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 243

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++   +E  L    + V     GE+ I      + D ++LD+ +  + G+ 
Sbjct: 7   RILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      +  ++    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 242

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 75  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      +S+   GD+ +N+  + V +    + LT +E++++ELL+  +   L       
Sbjct: 134 SGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIYE 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 235

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  +   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIHEYGDVKFDINNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   + + L+ E F+V   + G  G+++ +    D +ILD+ + ++ G+E
Sbjct: 8   RILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGWE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +  +D V GL+SGADDY++KPFN +EL ARIRA++RR   
Sbjct: 68  VCRRLREFS-QIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++  G  + ++   + V V+G  + LT  EY ++ LL+      L  E  L  ++ 
Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + V+I  LR+K+         + T WG GY L
Sbjct: 187 HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 239

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 74  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238


>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
 gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
 gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
           [Citrobacter rodentium ICC168]
          Length = 229

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDRMVQTVRGTGYRF 225


>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
 gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
          Length = 247

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 131/225 (58%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  +EL L+ E ++V V   G +G+ L     FD ++LD+ L  I G E
Sbjct: 26  KILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGIE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++   ++ D+V GL +GADDYI KPF  EEL+ARIR I+RR+  
Sbjct: 86  ICRRVRTQS-QVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+ +++ A  V VQG+++ LT  EY +++LL   KN   T+E  L  +
Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E  ++DV+I  LR KL        YIETV G GYV+RE
Sbjct: 205 WGYDTDIETNVVDVYIRHLRTKLPGDTNA--YIETVRGVGYVMRE 247


>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 230

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ ++  +   L    + V     G+  +        D ++LDL L  + G E
Sbjct: 4   RVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      P+ +L+      D+V GLQ GADDY+SKPF+  ELV R+ +++RRS  
Sbjct: 64  VCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGE 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R    +++  G L V    +   + GH + LT +E+ ++  L       L +   L  +
Sbjct: 124 PRTAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPARALGRAELLERV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +   + V + +LR+K+       + I TVWG GY     
Sbjct: 184 WGWNF-GDQSTVTVHVRRLREKVEADPANPHRIVTVWGIGYRYEPT 228


>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 248

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 241


>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
           IMS101]
 gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
           [Trichodesmium erythraeum IMS101]
          Length = 243

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E       D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125

Query: 122 HAQSLIVTGD------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +  + I +        + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 NGGNGIPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 234


>gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 233

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 160/226 (70%), Positives = 192/226 (84%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A+A SI+LMLK+  FN+Y+TDLGE+G++L K YE+D IILDL L DI G+
Sbjct: 1   MRVLLIEDDDAVARSIDLMLKAAGFNIYITDLGEEGVDLGKVYEYDLIILDLSLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR+++I+TPV ILSG   IE KV+ L  GADDY++KPFNK+EL+ARI AIVRRS+
Sbjct: 61  EVLKQLRMSRINTPVLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA+S+I TGD+ VNLDAKTVEV+  R+HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAESVIRTGDILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKL  A GG ++IETVWGRGYVLR+ + 
Sbjct: 181 GMDEPELKIIDVFICKLRKKLQKATGGDHFIETVWGRGYVLRDPSP 226


>gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Alteromonas macleodii
           ATCC 27126]
          Length = 226

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 130/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  E         G  G +     E DA+ILD+ L ++ GF
Sbjct: 1   MKVLLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV +LS  S +EDKV+GL++GA+DY++KPF  EEL+AR+  +  R++
Sbjct: 61  SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++LI  GDL+++L  + V      I L  KE+Q++E L   K   +T+ M L  ++
Sbjct: 121 EGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +P+  +IDV I +LR+K+  A      IETV G GY + +
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAFNVP-LIETVRGTGYRIAD 223


>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  ++  L+   ++      G+ G+++ +  + D ++LDL L  + GF 
Sbjct: 4   KILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+      D + GL+ GADDYI+KPF+  ++VARI+A++RR  G
Sbjct: 64  VCRTLRAES-SVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122

Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  ++     + ++L  +TV ++ + I  LT  E+ ++  L       LT+   L+ +
Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E   + +D  I  +R+K+        YI TV+G GY   E
Sbjct: 183 QGEEGEAYDRTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKFAE 227


>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
           glutamicum ATCC 13032]
 gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 232

 Score =  272 bits (697), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +
Sbjct: 3   RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+ 
Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ ++      + K +DV + +LR K+        Y+ TV G GY   
Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 234

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  K   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++   V   G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
 gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
           Twist]
          Length = 251

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   + V     G   +      E D II+D+ L D+ GF 
Sbjct: 29  KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             + LR A    PV  LS   S EDK+ GL  G DDY++KPF+ +E++AR+ AI+RR++ 
Sbjct: 89  ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL ++ ++  V ++G+ I L+  E++++    L  N  L+K   L H++D
Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++ +I  +R+KL  A   +  I T  G GY++R
Sbjct: 209 YDFDGDSSIVESYISYIRRKL-AAYSSETIIHTKRGFGYIMR 249


>gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 229

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++A      L+   F+V +   G++G++    +++D IILD+ L    GFE
Sbjct: 3   KILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+ K +TP+ ++S      DKVRGL  GADDY++KPF+  ELVAR+RA + R   
Sbjct: 63  ICKEIRLTK-NTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       I  G++S+   +++V V     +LT KE+ ++ LL+        KE   
Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I ++R+K+        YIET+WG GY  R
Sbjct: 182 ETIWGWDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKFR 228


>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 224

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +   ++L L+ E F V   D G   ++L +    D  ILD+ +  + GFE+
Sbjct: 5   ILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLNGFEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR      P+ ILS  S   DK+ GL  GADDYI+KPFN  E+VAR++A +RR+   
Sbjct: 65  TRALRKFS-DIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRASRS 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++   +L+++     +   G +I LT  EY+++ LL        TK           
Sbjct: 124 GSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIGNY 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E +   + V I KLR K+ +      YI TV G GY L +
Sbjct: 184 FEGDDNTMMVHISKLRDKIEDDPKSPRYIITVRGLGYKLEK 224


>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
           [Edwardsiella ictaluri 93-146]
 gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
           [Edwardsiella ictaluri 93-146]
          Length = 229

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +  +L+   +     +  +  +        D I+LD  L    G 
Sbjct: 3   IRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGI 62

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR
Sbjct: 63  QLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A +  I    LS++  +  V V    + +   E++++           ++E  LNH
Sbjct: 123 ISPMALEESISLQGLSLDPISHRVTVHDSAVDMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALE-GSGHDRMVQTVRGTGYRF 225


>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 228

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK + H I + L++E       +   + +   +   FD IILD+ + ++ G E 
Sbjct: 5   ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMDGIEA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +LS  S   DK++GL SGADDYISKPFN  EL+AR+++ +RR + +
Sbjct: 65  CMKIREEQ-HMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKKY 123

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++IV G L +N D + V   G  I LT KE+ ++ELL+  K   ++      
Sbjct: 124 NTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          + V I K+R+K+        YI+T+WG GY +
Sbjct: 184 SVWKEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGYKI 228


>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+  L+ + F+V     G+  +++        I+LDL L  + G E
Sbjct: 6   KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+  +  ++K+ G+  GADDY++KPF+  ELV R+RA++RR+  
Sbjct: 66  VCNRIRAVS-SVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +        GDL V++    V+ QG  ++LT  E++++ +         ++E  + 
Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +    E   + +D +I  +R+K+ +      YI TV+G GY  
Sbjct: 185 KAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229


>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
 gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
 gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
          Length = 239

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ ++   +   +   ++   L
Sbjct: 126 MGQNILLAGRLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPSEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 233

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 3/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD AL   +   L+ E +   V   G++     +  E+D I+LD+ L    G E
Sbjct: 4   RILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR  K  TPV +L+      D+V GL+ GADDY++KPF+  EL+ARI+ I+RR   
Sbjct: 64  ICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRRRNL 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I  G + +  +   V ++G ++ LT KE++++ LL   K   L ++  L  L
Sbjct: 124 DLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNKGRVLKRDYLLQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D  D  + +++DV + KLR+KL++       IETV G GY   E   +E
Sbjct: 184 WDYGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFEEKGYEE 233


>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
 gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
           [Acaryochloris marina MBIC11017]
          Length = 792

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 126/226 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A +++ +L   N+ V +   G+   EL + +E+D I+ D+ L  + G 
Sbjct: 1   MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      P+ +L+G  S  D+  GL +GADDY+ KPF+ EEL AR+RA++RR  
Sbjct: 61  GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++  A  V+ Q   + LT KEY ++EL+        +  M L H++ 
Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D P  + +   I  LR+KL  +    + IETV+G GY L+  A+
Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226



 Score =  104 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 70/169 (41%), Gaps = 15/169 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++DD  +  ++  + K     V   D      E       D ++LD+ + +I G +
Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKV-RGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R +R        P+  L+   +  D V +   SGADD+ISKP    ELV RI   + R
Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           +R   +        +++  A+ +        L     +++      +  
Sbjct: 608 TRLQRRLS------TIDPLARVLSRHESTHAL-----ELLLSEVAHQPR 645


>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 223

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G + ++  +    V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSELVCGPVKLDTKSSKATVNGVTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL         IET+ G GY ++  A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----LIETIRGLGYRMQAPA 220


>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
          Length = 227

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S++ +L++  + V     G + +E       D ++ D+ +  + G  +
Sbjct: 7   VLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPVMDGLGL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A  + P+ +L+  S + D V GL +GADDY+SKPF  +EL+AR+RA+ RR+   
Sbjct: 67  CRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTTHL 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S     DL +  +A  V   G  I L+  EY ++ +L+      L++    + ++   
Sbjct: 127 PASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWGYA 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             P    ++V+I  LR+KL  A G    I+TV G GY L
Sbjct: 187 MTPASNSLEVYISYLRRKLE-AEGEPRIIQTVRGVGYRL 224


>gi|229100335|ref|ZP_04231208.1| Response regulator [Bacillus cereus Rock3-29]
 gi|228683091|gb|EEL37096.1| Response regulator [Bacillus cereus Rock3-29]
          Length = 240

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    G++GI +CK  + D IILD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGKEGIHMCKQVQPDLIILDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR++
Sbjct: 72  SVCQQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 GHAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ I    GD++++    TV      + LT KE+ ++  L    N   +K      +
Sbjct: 131 YQEKARIVYQFGDITIDEAQGTVLRGDTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V +  LR+K+ +     +Y+ TV G GY L
Sbjct: 191 WGDTYLGNDNIMMVHMRHLREKIEDNPSKPHYLVTVRGLGYKL 233


>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 228

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      +   LK  +F V +   G DG+      E D IILD+ L  + G+
Sbjct: 1   MKILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR      PV  L+    +ED+++GL+ GADDY+ KPF+  EL+AR+R I+RR +
Sbjct: 61  EVMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRRGK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 SGVEATSLKVADLELDLLRRRVTRAGKRIDLTSKEFGLLELLMRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +I+V + +LR K+ + A     ++TV G GYVL 
Sbjct: 181 DMNFDSDTNVIEVAVRRLRSKI-DDAFEPKLLQTVRGMGYVLE 222


>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 226

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 223


>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
           [Stenotrophomonas maltophilia K279a]
 gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
           regulatory protein [Stenotrophomonas maltophilia K279a]
          Length = 232

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 127/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+    + +   L    + V +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A    PV  L+  SSI D+V+GL+ GADDY++KPF   EL+AR+R ++RR +
Sbjct: 61  NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   IV  DL V+   + VE  G RI L+ KEY ++ELL+ R+   L + +  + ++
Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +    K  I TV G GYVL   
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFDAK-LIVTVRGMGYVLEAP 224


>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
 gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           E33L]
          Length = 229

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 127/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTIISGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
 gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
           SK14]
          Length = 219

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 134/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL LK E++NV +   G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQEQ-STPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +++I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
 gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 241

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTQ 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  +  G+  +NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3]
 gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella sp. ANA-3]
          Length = 226

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR++ ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S      LS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 222


>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 232

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+K +A +IE  L ++ + V +   G + +E+ +    D  I+D+ +  + G  
Sbjct: 5   HILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMPKMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               LR      PV +LS  S   D++ GL  GADDY++KPF   EL+AR+ + +RR + 
Sbjct: 65  FTMKLREHH-HFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYKR 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + ++I  G L +N + K   V G+ + LT  EY+++ LL          E  
Sbjct: 124 FSNLLNEESSNVITIGGLELNTETKEFTVDGNAVKLTPIEYKILNLLMKHPGRVFPTEEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++         I V I  +R+K+        Y++ VWG GY L + 
Sbjct: 184 YERIWNET-AINTDTIMVHIRNIREKIEINPKNPKYLKVVWGVGYKLEKQ 232


>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
 gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
          Length = 242

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L+ E F V+  D GE+ +E+    +    ILD+ +  + G E+
Sbjct: 16  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIRE-KYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium ulcerans Agy99]
 gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
           Agy99]
          Length = 232

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    + V +   G + +E+      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR++ 
Sbjct: 64  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DLS++   + V     RI LT  E+ ++E+L       LT+   L 
Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 232


>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
 gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 241

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDG 237


>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 241

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+  LA  +   L  E +   V D G +G++      FD IILD+ L  + GFE
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L  LR   I TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR++ 
Sbjct: 64  ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +I  G+LS+  +   V + G  + L  KE++++  L  R    +T++ 
Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +N ++        + +DV +  LRKKL         IE++ G GY L 
Sbjct: 184 LMNIVWGFDYIGGQRTVDVHVSSLRKKLE-LGQQSVQIESIRGVGYKLV 231


>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 119/221 (53%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++++   +++ L+  N  V     GE+G++L         +LD+ L  I GF+
Sbjct: 3   KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+      DK+ GL+ GADDYI KPFN  E+V RI+A++RR   
Sbjct: 63  VCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLGD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G   ++L ++ V      I +T KEY ++++     N   T++  L+ ++  
Sbjct: 123 EDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWGE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + KIIDV I +LR K+ + A    YIET+WG GY  +
Sbjct: 183 NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYRWK 223


>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
 gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2207]
          Length = 240

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   + + L++  FNV   D  +         + D ++LD  +    G E
Sbjct: 12  RILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGTTGLE 71

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR L+  +++  TP+ +L+  +  + K+ GL SGADDYI KPF+  EL++R+ A++RR 
Sbjct: 72  LLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRRI 131

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A +  I  G+L  +     V + G  I+L   EY++++     +    ++   L+++
Sbjct: 132 GREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDYV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + G    + + +DV I +LRK +S  AG +NY++TV G GY       +
Sbjct: 192 WGGNVYLDERTVDVHIRRLRKAIS-VAGHENYVQTVRGAGYRFSAQVSN 239


>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 229

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
 gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Aeromonas veronii B565]
          Length = 229

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +   DG+   +    + I+LD  +    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+  +++   PV +L+     EDKVRGL++GADDYI+KPF+ +EL AR+ A++RR 
Sbjct: 64  FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V  +   + +   E++++           ++E  LN++
Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225


>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
 gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
          Length = 219

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+NV + + G  G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRAI+RR    
Sbjct: 64  CRQIRQE-YSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--QP 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + ++ DA  V V G ++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGFN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
 gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
           limosum KIST612]
          Length = 239

 Score =  272 bits (696), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL++D+  +   +E  L+ E F  V +   G++ +  CK    D +ILD+ L D+ G 
Sbjct: 8   RILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPDMDGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV RA+R      PV  LS  +   DK+ GL SG DDYI+KPF+ +ELV R++A +RR  
Sbjct: 68  EVCRAIREFSY-CPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A   I  G L +++D   V   G  + LT +E+ ++  L+      ++K+  
Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++          I V I  LR+K+         I TV G GY +
Sbjct: 187 YEQVWGELSAVCDNTIMVHIRHLREKIEKDPSRPALILTVKGLGYRM 233


>gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
 gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Ralstonia solanacearum
           PSI07]
          Length = 228

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 131/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG+ L    ++D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +++++LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +       I+TV G GYVL + 
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFA-PKLIQTVRGMGYVLEDP 224


>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
           tarda EIB202]
 gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda FL6-60]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +   +  +L+   +     +  +  +        D I+LD  L    G 
Sbjct: 3   IRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGI 62

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++++ L+    +   PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR
Sbjct: 63  QLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A +  I    LS++  +  V  Q   + +   E++++           ++E  LNH
Sbjct: 123 ISPMALEETINLQGLSLDPVSHRVTAQDDAVEMGPTEFKLLHFFMTHPERVYSREQLLNH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKALE-GSGHDRMVQTVRGTGYRF 225


>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
 gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
           15579]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQKIR-NKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L ++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K    +   N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227


>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 244

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ +   +    D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +I    + ++ + + V     RI LTG E+ ++ELL  R     ++   L
Sbjct: 126 SGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +  G    I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYLFQ 234


>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
 gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
          Length = 224

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DK+ G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIRE-GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +    DL +N     V      I L+ +E+++++ L L K   L+++  L  ++
Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+D++I  LR K+ +    + +I+TV G G++ +
Sbjct: 183 GFDYIGNDNILDLYIKYLRDKV-DKPYERKFIQTVRGIGFIFK 224


>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
 gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 16-3]
 gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli TA206]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
 gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
 gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
           NA1000]
          Length = 230

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L N     + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKAL-NGTTDADPIRTVRSAGYSLDMDA 229


>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 232

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L+   + V     G + +        DA+I+D+ +  + G 
Sbjct: 3   MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      P+ +L+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ RRSR
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       +   DL+++  ++ V     RI LT  E+ ++ +        L +   L
Sbjct: 123 PEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERSWLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++          ++V+I  LR+K  +  G    I TV G GYVLRE
Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEPRLIHTVRGVGYVLRE 229


>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 223

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A   TPV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L   K   +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKASVDGKPLKLTSHEYRLLAYLMHHKGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
 gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
           NaphS2]
          Length = 235

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ EDD+ +   +   L+SE + V     GE+ ++L K   FD ++LD+ +    G++
Sbjct: 4   HILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKSGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      DKV GLQ GADDYI+KPF   EL+ARI A++RR+R 
Sbjct: 64  VCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRARR 123

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + +              G+  ++     +      I L+ +E ++++   L  N  L+++
Sbjct: 124 NHEEAKKGENVPDLFKFGESQIDAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             LN ++        + +D  I +LRKK+        +I TV   GY 
Sbjct: 184 QLLNAVWGIDYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGYR 231


>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 129/227 (56%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  IEL L  E + V     G DG ++ K  ++D I+LD+ L  + G E
Sbjct: 4   KILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR +    PV +L+      DKV GL  GADDY++KPF  EEL+ARIR  ++R   
Sbjct: 64  ILRRLRESS-DIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             + +  +LI   +LS++L+  +V  +   I LT KE+ ++  L   KN  L+++  L  
Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  ++DV+I  LR K+ +    K YI TV G GYV+++ 
Sbjct: 183 VWGFDYFGDTNVVDVYIRYLRSKIDDKYKEK-YIYTVRGVGYVVKDE 228


>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
 gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
           entomophila L48]
          Length = 224

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    ST + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  GVLQRLRAES-STRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H   S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QHLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFEDKLIHTLRGVGYVLE 221


>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
 gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli MS 107-1]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L         ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GEHDRMVQTVRGTGYRF 225


>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  +NF V     GE+ +++  +  +   IILD+ +  + G+
Sbjct: 13  KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R      P+ +L+  S   D++ G   G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 73  EVCREIR-KNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 131

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + + + +I  G + ++  A    V G  + L+ KE++++      +   L++E  LN ++
Sbjct: 132 QNNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     + + ID  + KLR K+ +      YI+TVWG GY    +
Sbjct: 192 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFEVD 233


>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
           10507]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A      L+   F V +   G+ G++     +FD IILDL L ++ GF+
Sbjct: 3   KILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVREIK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
           BAA-613]
          Length = 226

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L ++ F V     GE+ +++     +   ++LD+ +  + G+
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVLRTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 124 VASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+        YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---EYIKTIWGMGYKFE 222


>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
 gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
          Length = 225

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 132/225 (58%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHFLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 241

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 123/239 (51%), Gaps = 17/239 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120

Query: 119 SRGHAQSL------------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
                Q              + T  + ++   + V    +R+  LT KE+ ++  ++ + 
Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++E  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237


>gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
 gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family
           [Ferrimonas balearica DSM 9799]
          Length = 240

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L + +E  L  + F V      E      +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVLRRRPA 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ +V G   +NL  + +      + LT  E+ ++++L       ++++  
Sbjct: 127 EVPGAPSQEEAEVVFGQYRLNLATREMYKGDEPVSLTSGEFAVLKVLVSNPREPMSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ + +      YI+TVWG GYV   + 
Sbjct: 187 MNQARGRDYSALERSIDVQVSRLRRLIEDDPSNPRYIQTVWGLGYVFVPDG 237


>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 306

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++A+   + + L+ E F V     G+  +        D ++LD+ L DI GF 
Sbjct: 80  RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR A    P   L+   + +DKVRGL  G DDY++KPF+  ELVAR+RAI+RR+  
Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +   DL ++   + V   G  + LT  EY++++ L       LT+   L+
Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           H++      E  +++ +I  LR+K+ N       I TV G GYVLR
Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNV--EPPLIHTVRGVGYVLR 303


>gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 236

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 126/231 (54%), Gaps = 2/231 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D+  +   + + L++  +     + GEDG+      + D +ILDLGL D+ G +
Sbjct: 6   RIVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGLPDMRGAD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VLRA+R    S PV ILS     E+K+R L +GADDYI+KPF   EL+ARIR  +R S +
Sbjct: 66  VLRAIREWS-SVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G L ++L  + V V G  + LT  EY++++ L+      +T    L  ++ 
Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              E ++  + V+I +LR+K+        +I T  G GY LR   ++ + E
Sbjct: 185 SGYEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRLRLPHEETSVE 235


>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 224

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     G D ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 224

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL L  E + V V   G   +   +    D IILD  L  + G E+
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +    P+ +L+    +   V GL +GADDY+ KPF+ EEL+AR+RA +RRS+  
Sbjct: 64  CRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSKET 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  +++  DLS+N     V      + LT KE+ +++ L       +T++  L  ++  
Sbjct: 124 DSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  +I+V+I  LR KL      K  ++TV G GYVLR+
Sbjct: 184 DFMGDSNVIEVYIRYLRLKLEAN-NEKRLLQTVRGVGYVLRD 224


>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 225

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++  +   +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +       I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFA-PKLIHTARGMGYMM 221


>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
 gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
          Length = 235

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 135/236 (57%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA+ +   L+ E F V     GEDG+       FDAI+L++ L  + G+
Sbjct: 1   MRVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +I TP+ +L+      D+      GADDY+ KPF+   LVAR+RA+VRR+ 
Sbjct: 61  EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDLS++   + V      + LT +E+ ++E L    +T LTK   L +++D
Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
              + +  I++V++  LR+K+ +A  G + I+TV G GY L    + ET E  E+ 
Sbjct: 181 AHYDGDENIVEVYVGYLRRKI-DAPFGAHTIDTVRGVGYRL--TTRPETPESPESP 233


>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
 gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-ST24]
 gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BDRD-Cer4]
          Length = 232

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
 gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Thermomicrobium roseum DSM 5159]
          Length = 239

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L  +I   L+ E ++V V D GE  +E   F   D +ILD+ L  + GF+V
Sbjct: 4   ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ IL+   +  D+V GL+ GADDY++KPF+  EL+AR++A++RR    
Sbjct: 64  CRQLREQS-TVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRRELL 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G +  ++  G L ++L+ + V  +G  + L  +E+ ++  L+  +      E  
Sbjct: 123 ARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           L  ++      + + + V +  LR+KL +       IETV G GY L   +   T
Sbjct: 183 LRAVWGYDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRLTARSPQAT 237


>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus ATCC 14579]
 gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
 gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus cereus ATCC 14579]
 gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii]
 gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii]
          Length = 223

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +   I+  L+ E++ V + + G  G+++     +D I++DL L  +PG 
Sbjct: 1   MRVLVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPSLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI TPV IL+  S ++ +V+GL +GADDY++KPF  +EL+AR+RA++RR  
Sbjct: 61  EVLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +   DL +N   + V   G RI LT KEY ++E         LT+ M  +H+++
Sbjct: 121 AESSGTLQIDDLLLNPATREVTRGGQRIDLTVKEYALLEYFMRHAGRVLTRPMISDHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    +IDV++  LR K+ +    +  I T+ G GY+L+ +
Sbjct: 181 QDFDTFTNVIDVYVNYLRNKI-DRGRARKLIHTIRGSGYMLKVD 223


>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 620

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR+   
Sbjct: 65  CRKVRE-SLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +       + V + ++R K+     G+  I TVWG GY + 
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229


>gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
          Length = 227

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S    GDLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 231

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +  +L+ E F V +   G++ +      E D ++LDL L  + G EV
Sbjct: 4   VLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMSGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+ K S PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR R  
Sbjct: 64  CKNIRL-KSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGRHD 122

Query: 123 A--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G + ++++   V V G  + +  KE+ ++E L   +   LT+   
Sbjct: 123 DSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ ++      + K +DV I +LR K+        ++ TV G GY   +
Sbjct: 183 IDRVWGSDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGYKFED 231


>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 263

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 124/240 (51%), Gaps = 7/240 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V     G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFT 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   P+ +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  VCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRT 123

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +   V      I LT  E++++  L  R   T+     
Sbjct: 124 DRIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V +  LR KL        YI+TV+G GY L   + ++  E  E
Sbjct: 184 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSFNQAMEEAE 243


>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 220

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   +   L+   + V +   GEDG  L     +DAIILDLGL ++ G 
Sbjct: 1   MRVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R     TPV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S ++ GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYSLDDPA 220


>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
          Length = 234

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +A  IEL L +E +   V   G  G+   +    D +ILDL L  + G EV
Sbjct: 16  VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 76  ARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++   
Sbjct: 135 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-E 193

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 ++DV+I  LR+KL    G +  I TV G GYVLRE 
Sbjct: 194 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 234


>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L++  F  +  D G+      +    D ++LD+ L    G EV
Sbjct: 7   ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+      D++ GL+ GADDYI KPF+  E+VAR++A++RRS   
Sbjct: 67  CKELRSFS-QIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTP 125

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I  G + ++ D++ V V G+ + LT  E+ +++++  R N   ++   L+    
Sbjct: 126 QEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + E   + ID  I  LRKK+  A      I +++G GY  
Sbjct: 186 SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226


>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 232

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 247

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G D +     +  D ++LD+ L D  GF 
Sbjct: 16  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+   ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R 
Sbjct: 76  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ +A  V   G  + L+  E++++  L +     +++   L+ 
Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++     + ++++ +I  LR+K+   +     I T+ G GYVLR    ++
Sbjct: 196 VWNYEFGGDSRVVESYISYLRRKI--DSTAPPLIHTIRGVGYVLRLPPDEQ 244


>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
 gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 233

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 12/234 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR   +L+++D+K +A  IEL LK+EN+NV+    G+D +   +    D  ILD+ L DI
Sbjct: 1   MRQSTVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFE+L+ +R+   + PV +L+   S  DK+ GL  GADDYI KPF   EL+AR++A +R
Sbjct: 61  DGFEILKQIRLTH-NFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       S  + +  +    L +N            I LT  E+ ++ +L+  +   ++
Sbjct: 120 RFTRYNDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVIS 179

Query: 171 KEMFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++  +        + V I  LR+KL    G K  I+TVWG GY + E
Sbjct: 180 SENLFEQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 283

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   LK+  F V     G + + +      D ++LD  L  + G E
Sbjct: 32  RILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLE 91

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R        PV +L+ +   ED+V GL +GADDY++KPF+  ELV R+RA++RR+
Sbjct: 92  VCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRT 151

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A  +   V G   ++L A+ +   G  + LT +E+ ++  L         ++  L  
Sbjct: 152 VPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRQ 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      ++  + V + +LR+K+         + TVWG GY  
Sbjct: 212 VWGWE-IGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 254


>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 226

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGIDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDRVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 223


>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 231

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 9/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K LA  +   L    + V V   G +G+   +   +D I+LD+ L  + GF
Sbjct: 1   MKVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  K   PV +LS    +ED+VRGL+ GADDY+ KPF+  EL+ARI A+ RR+ 
Sbjct: 61  QLLRELR-KKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRND 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +++   DL ++L  + V      I LT KE+ +++L   +    L+++   
Sbjct: 120 PANLAEAHTNIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTLA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             ++D        +++  + +LR K+ +       I TV G GYV+   A+D+ C
Sbjct: 180 EQVWDINFNNNTNVVEAAVRRLRAKV-DGPFESKLIHTVRGMGYVIE--ARDQEC 231


>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
 gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 10876]
          Length = 229

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GY+ +E+
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYMWKES 227


>gi|116333923|ref|YP_795450.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099270|gb|ABJ64419.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 262

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 68/245 (27%), Positives = 126/245 (51%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ +++  + +  K E ++      G + +E+       +D + LDL L  + 
Sbjct: 19  MKLLMIEDNHSVSQMMSMFFKKEQWDAEFAYDGNEAVEMFSANPNIWDMVTLDLNLPGMD 78

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 79  GMQVSAEIRKLSPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 138

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163
           +     +               +VT +  +N   +   + GH+I  LT KE+ +++ L+ 
Sbjct: 139 AELGPTAKPTEAEPLNETEAFDVVTENFKLNTKTREAYLNGHQIQDLTPKEFDLLKTLAQ 198

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 199 KPRQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 256

Query: 224 NAKDE 228
           +  D+
Sbjct: 257 SGADQ 261


>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
          Length = 232

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +
Sbjct: 3   RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+ 
Sbjct: 122 TETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ ++      + K +DV + +LR K+        Y+ TV G GY   
Sbjct: 182 QLIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
          Length = 256

 Score =  272 bits (696), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +A  +   L    + V     G + +     +  D ++LDL L  + G E
Sbjct: 30  RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120
           V R LR      PV +L+     +D+V GL+ GADDY++KPF+  ELV R+ +++ R   
Sbjct: 90  VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 148

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A        L+ +  A+     G  + LT +E+ ++            +E  +  ++ 
Sbjct: 149 APAPRPPSAAGLTADPAARRATKDGAELALTLREFDLLAFFLRHPGRAFAREELMREVWG 208

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                ++  + V + +LR K+ +       I+TVWG GY      ++
Sbjct: 209 WDF-GDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFDPAGRE 254


>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 227

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + ++LDL L  + G EV
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR    
Sbjct: 69  ARRIRKTS-NVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVTPA 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI L+ KE++++ELL+       ++      ++ G 
Sbjct: 128 ITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVWPG- 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL    G +  I TV G GYVLRE+
Sbjct: 187 YQGGSNVVDVYIGYLRKKLE-GIGERRLIHTVRGVGYVLRED 227


>gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 226

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D ++LD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R +    PV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  GVLQTVRRSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +   GDL ++L  + V   G +I LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+V + +LR K+ +       I TV G GYVL   
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDPFEPKLIRTVRGMGYVLEAP 223


>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
 gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
 gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
 gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 240

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQAP 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  +  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 KVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVFVPDGE 238


>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED++ LA  I   L+ E +   +   G  G+E  +    D I+LDL L  + G
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            E+ + L+  + +   P+ +L+      D+V G + GADDY+ KPF+  EL+ R++A++R
Sbjct: 61  TEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLR 120

Query: 118 RSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R+         I  G ++++ +   V V G  I LT  E++++  L+ R     ++++ L
Sbjct: 121 RTMPEKAQGKCITIGLVTIDTERHMVSVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      + + +D  + +LR KL  A      I+TV G GY + E
Sbjct: 181 QNVWGYNYVGDTRTVDTHVTRLRTKLGEAG---EMIKTVRGFGYKMEE 225


>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 231

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  +E+ LK+EN+ V V   G   ++  +   +D  ILD+ L D+ GF
Sbjct: 3   MNILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPDMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R    + P+ +L+      DK+ GL  GADDY++KPF   EL+AR++A +RR +
Sbjct: 63  SICRTIRQ-NYTWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRRYK 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +    L +N +     +    ++LT  E++++  L  R+   ++      
Sbjct: 122 RYNVQQKAKELSYLGLVMNQEQHICRLNEKDLNLTPIEFRLLWYLCERQGKVVSARELYT 181

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++           + V I  +R+K+ +      YI+ VWG GY L E 
Sbjct: 182 AIWQEEYLSSSNNTLMVHIRHIREKMKDRGEHPRYIQNVWGVGYKLGET 230


>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 236

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++D+  +   +   L+   F V+    G   I+L      D ++LD+ L D+ GFE
Sbjct: 5   RLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDLDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   I +PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+  
Sbjct: 65  VTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTNH 124

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ D+  V   G  + L+  E++++  L L     L+K+  L+H+
Sbjct: 125 QIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLS-----NAAGGKNYIETVWGRGYVLREN 224
           +D     +  I++ +I  LR+K+      + +  +  I T  G GY+LR+ 
Sbjct: 185 WDYDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYMLRKP 235


>gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
 gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M21]
          Length = 224

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A+ ++  L    F+V + + GEDG+ L     +  IILD+ L    G+
Sbjct: 1   MRILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS    + D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+Q++ L+  R    L++      ++ 
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +       I+T+ G GYVL E A
Sbjct: 181 INFDTDTNVVDVAIRRLRKKV-DDPFPVKLIQTIRGVGYVLDECA 224


>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  +   L+SE + V +   G   +EL +      IILDL L  + G EV
Sbjct: 5   ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + LR   + TP+ +L+      DKV GL+ GADDY+SKPFN +EL+ARI A++RR+ + 
Sbjct: 65  CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++    +V     ++ L+ +E+Q++E L      T+ +E     ++  
Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + ID  I +LR KL +      YI TV G GY   
Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225


>gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 241

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 17/239 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +++   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRR 120

Query: 119 SRGHAQSL------------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
                Q              + T  + ++   + V    +R+  LT KE+ ++  ++ + 
Sbjct: 121 VMLEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++E  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237


>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
 gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      I +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAIDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   + + L+ E F+V   + G  G+++ +    D +ILD+ + ++ G+E
Sbjct: 8   RILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGWE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +  +D V GL+SGADDY++KPFN +EL ARIRA++RR   
Sbjct: 68  VCRRLREFS-QMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126

Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++  G  + ++   + V V+G  + LT  EY ++ LL+      L  E  L  ++ 
Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + V+I  LR+K+         + T WG GY L
Sbjct: 187 HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227


>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
 gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citrobacter youngae ATCC 29220]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        P+ +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
 gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter sp. M18]
          Length = 224

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++  A+ ++  L    F+V + + GEDG+ L     +D IILD+ L    G+
Sbjct: 1   MRILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS   ++ D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL ++L        GH + LT KE+Q++ L+  R+   LT+      ++ 
Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +       I T+ G GYV+ E A
Sbjct: 181 INFDSDTNVVDVAIRRLRKKV-DDPFPLKLIHTIRGVGYVIDEAA 224


>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 238

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +   L+   F V+    G   ++L    E D ++LD+ L D+ GF +
Sbjct: 9   LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDGFTI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  L+   S++DKV+GL  G DDY++KPF+ EE+VARIRAI+RRS   
Sbjct: 69  TRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSHAE 128

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            Q+     +   DL++N D   V   G  I ++  E+ ++  L    +  L+K   L+H+
Sbjct: 129 DQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     E+ I++ +I  LR+K+ +  G    I T  G GYVLR   +
Sbjct: 189 WDYDFRGEMGIVESYISYLRRKI-DTEGLPPLIHTKRGVGYVLRLPPE 235


>gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I+  L++E F V     G  G+     + +D +ILD+ L  + G+
Sbjct: 1   MRVLVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A     + +L+      D+   L +GADDY+SKPF+   LVAR++A+ RR  
Sbjct: 61  RVCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A    V GDL V+  A+T    G  I LT +E+ +++ L+ R    ++K   L  ++D
Sbjct: 121 SRAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   ++V I  LR+K+ +   G++ ++TV G GY L  + 
Sbjct: 181 AAADSDPNTVEVHISALRRKI-DTPFGRSALQTVRGAGYRLEPDG 224


>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A      L+   ++V +   G+ G+      +F+ IILDL L +I GFE
Sbjct: 4   RILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R +K + P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR+ A + R   
Sbjct: 64  ICRKIRESK-NIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+      +   +L ++ D++ V ++   I LTGKE+ ++  ++   N   ++E   
Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++      ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 183 DNIWGMDACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGYRFK 229


>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
 gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
          Length = 257

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + + V     G    +L +   F  I+LDL L +  G  
Sbjct: 24  RILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNEDGIS 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   LR      P+ +L+   S  D++ GL++GADDY+ KPFN +EL+ARI+A++RR   
Sbjct: 84  ICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQTR 143

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  +++L  +T++  G+ + LT  E+ +++ L       LT++  
Sbjct: 144 ELPGAPSQQMEVVEFGSWTLDLSTRTLKRDGNIVTLTTGEFSVLKALVQHPREPLTRDKL 203

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 204 MNLARGREWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVFVPDGAE 256


>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F V +   G +G+ L    ++  II+DL L  + GFE
Sbjct: 4   RILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+ I+S      DK+R    GADDYI+KPF+  ELVAR +A + R   
Sbjct: 64  LCSQIRQVK-EVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + I    L ++  ++ V V+   +  T +E+ ++E L+   N    K   
Sbjct: 123 LTARQAEPSNAEIHIRGLVIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 183 FERIWGMDSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGYRF 229


>gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 224

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  +A  +   L      V     G +G+ +    ++D +ILD  L  + G 
Sbjct: 1   MHILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR +   TPV  LS +  ++D+V GL++G DDY+ KPF   EL AR+ A++RR  
Sbjct: 61  AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L  + V   G  I L  +E++++E L       +T+ M L  ++
Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         ++TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRGKIDKDF-DPPLLQTVRGAGYRLQ 222


>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
           PR4]
 gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   + + G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +ALR      PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   +
Sbjct: 64  CKALRSRSG-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G + ++++   V+V G+ + L  KE+ ++E L       LT+   ++
Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+ +      ++ TV G GY L 
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKLE 228


>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
 gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           harveyi HY01]
 gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
 gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
          Length = 229

 Score =  271 bits (695), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 235

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E ++      G + +E  +   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  ELVAR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++  TV  +G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKRGKELTLTAKEIKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 268

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY + + 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGYRVEQP 268


>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  IE+ LK++ + V+    G D +E  +  + D  ILD+ L DI GF 
Sbjct: 4   QILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVMLPDIDGFR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ IL+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   
Sbjct: 64  ICQKIREQYF-YPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +  +                 L +N +     + G  + LT  E+ ++  L   +   ++
Sbjct: 123 YNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E    +++  +       +   I +LR+KL+  A    +I+TVWG GY + +
Sbjct: 183 SEELFENIWGEKFLDNNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235


>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
 gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
          Length = 219

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   I+  L  E + V     GE+GIE      +D +ILD+ +  I G+ 
Sbjct: 3   KILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIMMPKIDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R +R      P+ +L+  +   D++ G     D+Y+ KPFN + LVA+++A++RR  +
Sbjct: 63  VCRKIREES-QVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGK 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +V GDL+++   + V ++   + LT KEY ++      K   L++E  LN ++ 
Sbjct: 122 IIDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + + +D  I +LRKK+ +      Y++TV G GY   E
Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGD-----KYVQTVRGFGYKFEE 219


>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
           [Shewanella loihica PV-4]
 gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella loihica PV-4]
          Length = 238

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +   ++  L+   + + +   G DG        FD IILD+ L D+ G+
Sbjct: 14  MRILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGW 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R+     PV  L+   S+EDK+ GL+SGADDY+ KPF   EL+AR++ ++RR  
Sbjct: 74  QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              QS  +    L +++  +    +  ++HLT KE+ ++ELL   +   LT+    + ++
Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +IDV I +LR K+ +       I TV G GY L   A
Sbjct: 194 DMNFDSDTNVIDVAIRRLRAKV-DDPFSVKLIHTVRGMGYKLDTEA 238


>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 230

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A+   +++ L+ E ++VY    GEDG+ + +    + ++LD+ L  I GFE
Sbjct: 4   KILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR   
Sbjct: 64  VCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++LI+     ++  ++        + LT  EYQ+++         L ++  LN +
Sbjct: 124 EEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNLV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + KI+DV I +LR K+   A    +IETVWG GY  
Sbjct: 184 WGEDFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYRW 226


>gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 227

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 2   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L 
Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYMLE 223


>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A   +  L+   F V + + G+ G+      EFD IILDL L ++ GF+
Sbjct: 3   RILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVREEK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H   +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
 gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Bacillus pumilus ATCC 7061]
          Length = 228

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   I   LK + F++     G D +   +    D ++LD+ + D+ GF
Sbjct: 5   MHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  L+  S  ED++RGL+ GADDYI KPF+  EL ARI   +RR R
Sbjct: 65  EVCQRIRQTS-QIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIR 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +  +S I  GD+ ++ D + V +    I+LT +E+ ++  L L +    ++E     L
Sbjct: 124 GLSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        + +D  I  LR KL    G + +I+TVWG GY   E 
Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEE 227


>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
 gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 228

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +A      L+   + V +   G  G++      +D +I+DL L  + G
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+++ +R  K+  P+ +LS  S   DK+RGL  GADDY++KPF+  EL+ARIR+ ++R 
Sbjct: 61  FEIIKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRY 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +  +  +I    L +N  +  V V G  +  T KEY+++   +   N   +KE  
Sbjct: 120 ERLTGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + L+      ++  + V I K+RKK+        YIETVWG GY    
Sbjct: 180 FDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFNP 228


>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
 gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
          Length = 239

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 5/234 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  +A  +   L    + V     G   +     +  D ++LDL L  + G EV 
Sbjct: 2   LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLPGMDGLEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR      PV +L+     +D++ GL+ GADDY++KPF+  ELV R+ +++RR+R  +
Sbjct: 62  RRLRARGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPAS 120

Query: 124 QS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +    L ++  A+     G  + LT +E+ ++           ++E  +  ++   
Sbjct: 121 DARQLTAAGLRLDPAARHATRDGAELALTLREFDLLAFFLRNPGRAHSREDLMREVWGWD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCEYLE 234
              ++  + V + +LR K+ +       I TVWG GY     +   D+  E+  
Sbjct: 181 F-GDLSTVTVHVRRLRGKIEHDPAQPRLIRTVWGVGYRFESADTTADDDAEHAP 233


>gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
 gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD1]
          Length = 225

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+   F+V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  GVLKRLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V I +LR K+ +    K  I TV G GYVL  
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDDFPIK-LIHTVRGVGYVLEP 221


>gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 236

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L+   + V     GE+G  L     +D ++LDLGL    G 
Sbjct: 1   MRLLVVEDDKDLNRQIVSALERAGYAVDRAFDGEEGWFLGDTEPYDGVVLDLGLPGKDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV+G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  TVLSDWRKAGRVMPVLILTARDRWGEKVKGFDAGADDYVTKPFHIEELLARLRALMRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+   G +S +     V V+G  + LT  EY+++  L   +   +++   + HLYD
Sbjct: 121 GHASSVFSCGPVSFDERGGKVSVEGQPVKLTSHEYRLLGYLMHHQGKIVSRAEIVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VF+ +LRKKL         I T+ G GY+L     D+  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----VIHTMRGLGYILAPPTADDGA 225


>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
 gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
           NGR234]
          Length = 223

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L   R    + PV IL+      DKV G+ +GADDY++KPF+ +E++ARIRA++RR+ 
Sbjct: 61  TALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++       V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKGSKATVGGVALKLTSHEFRLLSYLMHHMGQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VFI +LRKK+ N       IETV G GY ++   
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGND-----LIETVRGLGYRMQAPG 220


>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 235

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F+V ++  G++G  +    ++  ++LD+ L    GF 
Sbjct: 3   KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + RA+R   +  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVRKE-LDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G L +      V V G  +HL  +E++++  L+       +KE   
Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++D         + V + +LR+K+        +++TVWG GY     A+
Sbjct: 182 DRVWDLEAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFNSEAQ 232


>gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
 gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50]
          Length = 222

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H I   L  E +NV     G+  ++  +   +D +I+D+ +    G 
Sbjct: 1   MRILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMIPKKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I  PV  L+  S  +D VRGL +GA DY++KPF   EL+AR+R ++R   
Sbjct: 61  SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++ +   V   G  + LT +EY ++E L   KN  +T+E    +++ 
Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+    ++DV+I  LR+K+ +    +  I T+ G GY L 
Sbjct: 181 IDDDINSNVVDVYIRYLRRKI-DDPFEEKLIHTIRGVGYRLE 221


>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 236

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 233


>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
           variabile DSM 44702]
          Length = 224

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L+ E F+      G + +E  +    D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VCRAVRDFS-AVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKELVARVRARLRRIPE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   GD++++     V   G  I LT  E++++  L+ R     ++E  L  ++  
Sbjct: 123 ETPDTATVGDVTIDFGGHQVTRDGAVIQLTPIEFELLGTLASRPRQVFSREELLERVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V I +LR K+         I+TV G GY 
Sbjct: 183 RKNSDTRLVNVHIQRLRSKVEKDPDNPVIIQTVRGVGYK 221


>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 GRESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
 gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator
           protein [Vibrio vulnificus YJ016]
          Length = 231

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K     +   L    + V +   G DG+       +D I+LD+ L  + G+
Sbjct: 1   MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR +++ TPV +L+    +ED+V+GL+ GADDYI KPF   EL+ARIR +++R +
Sbjct: 61  QVLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS   +   +L ++L  + V      I LT KE+ ++EL   +    +++    + +
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +IDV + +LR K+ +       I T  G GYVL E   
Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKV-DKPFEPKLIHTERGMGYVLEEREP 227


>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 226

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  LA  IEL L  E + V V   G   +   +  + D +ILD  L  + G E+
Sbjct: 4   ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIED--KVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      PV +L+    + D  +V GL +GADDY+ KPF+ EEL+AR+RA +RR++
Sbjct: 64  CRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++   DLS+N   + V      I LT KE+ ++E L       +T++  L  ++
Sbjct: 124 DADAGDILQFEDLSLNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D     +  II+V+I  LR KL      K  I+TV G GYVLRE
Sbjct: 184 DYDFIGDSNIIEVYIRYLRLKLETN-NEKRLIQTVRGVGYVLRE 226


>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 248

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 241


>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
 gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter sp. Nb-311A]
          Length = 234

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++  + V     G++     K    D +ILD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR+++++RR+
Sbjct: 64  LCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S++  GD+ ++ D   V   G  I L   EY+++E          ++E  LN +
Sbjct: 124 SPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV I +LR KL N  G  + I TV G GY L E 
Sbjct: 184 WGRDVYIDERTVDVHIGRLR-KLLNPDGEADPIRTVRGAGYALDEQ 228


>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 249

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+   +   L++E + V V   G  G+E  +  E D I+LD+ L  + G ++
Sbjct: 12  VLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLPGLDGLQI 71

Query: 63  LRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
              LR     + P+ +L+ +   +D++ GL SGADDY+ KPF+ +ELV R+ +++RRS  
Sbjct: 72  CERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRRSVI 131

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  GDL +N  ++        + LT +E+ ++           +++  LN 
Sbjct: 132 EPALPVAEVVREGDLQLNPVSRVAVRGRQPLSLTSREFDLLMFFLRHPGRVFSRDELLNR 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      ++  + V + +LR K+ +       I TV+GRGY     
Sbjct: 192 VWGWDF-GDLSTVTVHVKRLRHKIEDIPADPRRIVTVYGRGYRWDPQ 237


>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+A   +  L+   F V + + G+ G++     ++D  ILDL L ++ GFE
Sbjct: 3   KILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICREIRNQK-NTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    L ++  A+ V V G   + T KE+ ++  L+   N   TK+   
Sbjct: 122 LIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 KEIWAMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
          Length = 252

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 26  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 86  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 144

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 145 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 204

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 205 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 248


>gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
 gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645]
          Length = 234

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ L  S+   L         T  GE G+E  +  +FDAI+LDL L  I G 
Sbjct: 12  MHILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLMLPGIGGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR   I TP+ IL+ + S++D+V+GL  GADDY+ KPF   EL+AR+ A+ RR+ 
Sbjct: 72  EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G L+++L ++ V      I L+  E+ ++ELL       ++++M   HL+ 
Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +IDV I  LR+K+         I TV GRGYVLR
Sbjct: 192 QDWNGMTNVIDVHINHLRQKVDRGFDEP-LIHTVRGRGYVLR 232


>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  + ++EDD  +A  +   L+   F V     G   I   +    +  +LD+ +    
Sbjct: 1   MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60

Query: 59  GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R +R ++    TPV  L+  +S  DK+ GL  GADDYI+KPF+  EL+ARI+A++
Sbjct: 61  GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120

Query: 117 RR-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR  R    +++  GD+ ++  A T+ V+G+ +  T  E++++E L+       T++  L
Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + +DV++ ++R+K+        Y++TV G GY   
Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227


>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +D++ +   + L L+ +   +Y    G + +++    E D  I+D+ +  I G+ 
Sbjct: 3   RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R +R      PV +LS  S   DK+ GL  GADDYI+KPFN  E++AR++A +RR   
Sbjct: 63  LVRKIRE-NYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNK 121

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  G L +N++  T+  +   ++LT  EY+++  L   K    TK+  
Sbjct: 122 SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++++     +   I V I  LR K+ + +   +YI+T+ G GY L  N
Sbjct: 182 FEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231


>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 228

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 121/221 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ +A  +   LK ++  V +   G +G E  +   +D I+LDL L  + G 
Sbjct: 1   MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  +  + +L+   +  +K+ GL +GADDY+ KPF+ EEL ARIRA+ RRS+
Sbjct: 61  TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q +++ GDL ++     V      + LT KEY ++E         LT+   L+ L++
Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  + +   I  LRKKL      +++IETV+G GY L
Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRL 221


>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 219

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+ L L +E + V V   G +G+       +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   L AR++A++RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G L ++  A+ V + G  I LT KEY ++E L LR    ++K   L H++D
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++V++  LR+KL     G   I TV G GY+L 
Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLLE 217


>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
 gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + V+     E+G+++    E   ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R +  + PV +LS  S   DK+ GL  GADDY++KPFN  EL AR+++ +RR  
Sbjct: 64  EMCRKIRESS-NIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYT 122

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +  + I   ++ +N D   V +    I LT  E+ ++ LL+       + +
Sbjct: 123 QLNPNAGPNYVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 EIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIEK 233


>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++A+A   +  L+   F V + + G+ G+E     E+D IILDL L ++ GF+
Sbjct: 3   KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  K + P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQVRQEK-NIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I    + ++  A+ + V G     T KE+ ++  L+   N   TK    
Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RQIWDMESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRFK 228


>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
 gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas tunicata D2]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +  +L+   F     +  +  I        D I+LD  L    G +
Sbjct: 4   RILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + ++ ++ +   P+ +L+     EDKV+GL+ GADDY++KPF+ +EL+ARI+A++RR 
Sbjct: 64  IAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V   G  + +   E++++           ++E  L+H+
Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSAGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK ++   G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIAP-MGHDKLVQTVRGSGYRF 225


>gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 226

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYMLE 222


>gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 227

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  +   L    F V +   G DG  +    ++D ++LD+ L D+ G+
Sbjct: 1   MKILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +QS  +   DL ++L  +     G +I LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +   IDV I +LR K+ +       I TV G GY L
Sbjct: 181 DMNFDSDSNAIDVAIRRLRAKI-DDPFEPKLIHTVRGMGYTL 221


>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 232

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+   +    +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEEDSKEPKFIQNVWGVGYKIED 232


>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
           SL1]
 gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
           [Halorhodospira halophila SL1]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD A+   +   L+ + F V        G E  +    D I+LD  L  + G E
Sbjct: 4   RILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVSGVE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R L+    +   P+ +L+     EDKVRG  SG DDY++KPF+  EL AR++A++RR+
Sbjct: 64  WARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRT 123

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +    L ++  +  V   G  + L   EY+++       +   T+   L+ +
Sbjct: 124 APSTADTPLEAAGLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I +LR K+    G    ++TV G GY   E 
Sbjct: 184 WGTNVYVEERTVDVHIRRLR-KILATTGHDGLVQTVRGAGYRFSEQ 228


>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
 gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
           200]
          Length = 242

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I++ L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRVREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  ++LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 225

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +A  IEL L +E +   V   G  G+   +    D ++LDL L  + G EV
Sbjct: 7   VLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPVLDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 67  ARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-E 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 ++DV+I  LR+KL    G +  I TV G GYVLRE 
Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225


>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 246

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + + V          +      ++ ++LDL L    G  
Sbjct: 13  RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLPGEDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL +GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 73  ICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQVK 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   +   +  G  +++L  + +   G  + LT  E+ +++ L       LT++  
Sbjct: 133 ELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ + +      YI+TVWG GYV   + +
Sbjct: 193 MNLARGREWSAMERSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVFVPDGQ 244


>gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
 gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC
           29220]
          Length = 227

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
          Length = 226

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +    PV  L+    IED+VRGL+ GADDY+ KPF   E +AR+R ++RR R
Sbjct: 61  AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    + + +L ++L  + V   G RI LT KE+ ++ELL  RK   L + +  + ++D
Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+V + +LR K+ +       I TV G GYVL 
Sbjct: 181 MNFDSDTNVIEVAVRRLRVKV-DDPFEPKLIRTVRGMGYVLE 221


>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +A  I   LK E +++ +   GE  ++  +   +D +ILDL L  I G E
Sbjct: 4   KILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLPGIQGLE 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R       T + I++  S   DK+ GL++GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 64  ICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMRRT 123

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +   I   DL ++ +   V V+G    L+  E++++  L+ R N   +++  L+ 
Sbjct: 124 LPAVSNNQIIKIKDLIIDKEKYLVTVKGQPKRLSATEFKLLLYLAERPNKIFSRDHLLDA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +DV I +LR K+ +      YI+T+ G GY + 
Sbjct: 184 VWGQDIYVDPRTVDVHIRRLRLKIEDYPDNPEYIKTLRGIGYYIE 228


>gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6]
 gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
 gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6]
 gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
           MO6-24/O]
          Length = 231

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K     +   L    + V +   G DG+       +D I+LD+ L  + G+
Sbjct: 1   MKLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR  ++ TPV +L+    +ED+V+GL+ GADDYI KPF   EL+ARIR +++R +
Sbjct: 61  QVLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQQ 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              QS   +   +L ++L  + V      I LT KE+ ++EL   +    +++    + +
Sbjct: 121 PTTQSTTRLSIANLHLDLLRRKVFRDKEPIALTAKEFALLELFMRKTGEVMSRSQIASSV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +IDV + +LR K+ +       I T  G GYVL E   
Sbjct: 181 WDMNFDSDTNVIDVAVRRLRNKV-DKPFEPKLIHTERGMGYVLEEREP 227


>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
 gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
          Length = 231

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 4   KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 64  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S +    L +N+      + G  + LT  E+ ++ +L       ++ E 
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++           I V I  LR+KL++ +    YI+T+WG GY +
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus ATCC 4342]
 gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar tochigiensis BGSC 4Y1]
          Length = 232

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANAITSGPFSLNIIEERLYKSGQLVELTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 231

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++AL   +   L++E F V     G+D   L      D ++LD  L  + G 
Sbjct: 1   MQVLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGI 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ R +R  + +   PV +L+      D+VRGL +GADDYI KPF+  EL+ARIRA++RR
Sbjct: 61  ELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++  H    +  GDL ++     V   G  +HL   E++++E L L      ++E  L+ 
Sbjct: 121 AKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +DV + +LRK L N     + I TV G GY   E 
Sbjct: 181 VWGHDVYIDERTVDVHVGRLRKAL-NGPRQADPIRTVRGSGYAFDET 226


>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
 gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
 gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 225

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +A  IEL L +E +   V   G  G+   +    D +ILDL L  + G EV
Sbjct: 7   VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ IL+    I+DKV GL SGADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 67  ARRIRKTS-NTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +NLD + +   G R+ L+ KE++++ELL+       ++      ++   
Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-E 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 ++DV+I  LR+KL    G +  I TV G GYVLRE 
Sbjct: 185 YTGGSNVVDVYIGYLRRKLEE-GGERRLIHTVRGVGYVLREE 225


>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 230

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++IEDD ++   ++L L  E ++V     GE G+ L K    D +++D+ L  + G E
Sbjct: 4   KIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ ILS      DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRRS 123

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++         G + ++L+A+   V G  + LT +EY ++       +   ++E  + 
Sbjct: 124 RGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++  R     + +D FI +LR  + + A    ++ETV G GY    
Sbjct: 184 NVWGSRYFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGYRFNP 230


>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
 gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   +   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + LR      PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRSRSG-VPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++  G + ++++   V+V G  + L  KE+ ++E L       LT+   ++
Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 RVWGADYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKLE 228


>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 240

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL--CKFYEFDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    + V+    G++G+++   K    D IILDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K S     P+ +L+      D+V GL+ GADDYISKPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q       +  G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
 gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
 gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
 gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
 gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
 gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
 gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
           13177]
 gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
 gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
 gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
 gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
 gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
           K96243]
 gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
           23344]
 gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
 gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
 gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
 gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
 gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
 gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
 gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
 gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
 gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
 gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
           52237]
 gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
 gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
 gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
 gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
 gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
           9]
 gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
           horse 4]
 gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
 gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
 gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
          Length = 229

 Score =  271 bits (695), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A  STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 229

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   + L+L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +++ ++        PV +++     ED+VRGL  GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  LIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLRRV 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ +I    L ++  +  V  QG  + +   E++++           ++E  LN++
Sbjct: 124 SPMSAEDIINMDGLILDSSSHRVSSQGQNVEMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VGGHDRMVQTVRGTGYRF 225


>gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-03]
 gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-07]
 gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO
           3283-12]
          Length = 225

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 132/226 (58%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI-PG 59
           MR+LL+EDD+ + + +   L      V   + G++G+ L    +FD IILD  L     G
Sbjct: 1   MRVLLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPGGVEG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ LR    +TPV +LS ++ +++KV GL++G DDY++KPF+  EL AR+ A+VRR+
Sbjct: 61  LHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  AQ    +  GDL ++L ++ V+  G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +P+  +IDV I +LR+K+         + T+   GY+L+E
Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKIDRPFHHP-LVHTIRNAGYMLQE 225


>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
           str. Paraca]
          Length = 587

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 117/222 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222



 Score = 76.8 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+ I DD  +   +E +L      V   +      ++ +    D +I+D+ +    G +
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYIS 100
           + + +R        P+ +L+  +  E +    ++GADD+IS
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFIS 587



 Score = 51.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +L+++ D  L   I     S      +         +   Y+   I+L+L        G 
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            +L  +       PV I S  SS  D++   + G+  ++ KP +  +++  +  I+
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGIL 479


>gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 218

 Score =  271 bits (694), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 76/217 (35%), Positives = 116/217 (53%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD+ +  ++E  L  +++ + V   GE+G+ L     +D I+LD+ L  I G  + R L
Sbjct: 2   EDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLPKIDGIALCRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R    STP+ +L+   +I DKV GL +GADDY+ KPF+ EEL ARIRA++RR    A  +
Sbjct: 62  RSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRRGVSTAPPV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  G L ++     V  Q   + L+ KEY ++E          ++   L HL+     PE
Sbjct: 122 LEWGKLRLDPSTCEVFYQDRLLSLSPKEYSLLEFFLRHGRRVFSRAQILEHLWPFERLPE 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +   I  LR+KL       + IETV+G GY L++
Sbjct: 182 EATVKAHIRSLRQKLEAGGAPSDLIETVYGLGYRLKQ 218


>gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family
           protein [candidate division TM7 single-cell isolate
           TM7c]
          Length = 224

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--P 58
           MRIL++ED+K LA +I   LK+E + + +     +G  +     +DA+I+D  +      
Sbjct: 1   MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++L+ LR   ISTP  +L+ +     K+ GL +GADDY++KPF  +EL+AR+RAI+RR
Sbjct: 61  GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +++  G L ++   +TVE    +I LT KEY +++ L      TL+KE  + H+
Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +     ++ +I  LRKK+      K YI+TV G GY L E
Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVK-YIKTVRGIGYRLEE 224


>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
 gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
          Length = 239

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +E  L    +NV     GE+ I L    + + +ILD+ L  + G+ 
Sbjct: 9   KILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDGYT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  K + P+ +L+    I D+V GL+ GADDY+ KPF  +EL AR+R+++RRS  
Sbjct: 69  VCSELR-KKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +           G+L++N   + V     R+ LTG E+ ++ELL       L++   L+
Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187

Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +++DV I +LR KL    G  + I T  G GY+ ++
Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMFQK 236


>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
 gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
          Length = 221

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ L   I   LK  N++V     G++ ++   + E+D II D+ + ++ G+
Sbjct: 1   MRILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR  K +TPV +L+   ++EDK+ GL SGADDYI KPF  +EL+ARIR ++RR+ 
Sbjct: 61  EFIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I   D+ +++  K V      I LTGKEY+++E L   K + L+++  LNH++D
Sbjct: 121 GLATNIIQIEDVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E    I+DV I  +RKKLS        I T  G GY
Sbjct: 181 YNYEGASNIVDVIIKNIRKKLS-NGEDSTIIYTKRGLGY 218


>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
           winogradskyi Nb-255]
 gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 223

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+   L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL         I+TV G GY+L   A
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPPA 220


>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  +L+ E F V V + G D ++       D ++LDL L  + G E
Sbjct: 3   RVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR    + PV I+S   +  DKV GL+ GADDY++KP++  EL+ARI+A++RR + 
Sbjct: 63  VCRALRTRG-NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G + ++++   V V G  I L  KE++++E+L       LT+   ++ ++
Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + K +DV + +LR KL        ++ TV G GY   
Sbjct: 182 GADYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGYKFE 224


>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
 gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
 gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia fergusonii B253]
 gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
          Length = 229

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGETPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-SGHDRMVQTVRGTGYRF 225


>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 238

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS       +    L ++  A+   + G R+ LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGESE 238


>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
 gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
 gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
 gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
 gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
 gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
 gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
 gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
 gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
 gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
          Length = 232

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  IE+ L +EN+ VY    G D +      EFD  ILD+ L  + GF 
Sbjct: 4   KILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  LCQKIRE-KYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++ S         +     L +N       + G  + LT  E+ ++ +L   K + +  E
Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + ++           I V I  LR+KL +      YI+T+WG GY +
Sbjct: 183 NLFHAIWKDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGYKI 232


>gi|332142499|ref|YP_004428237.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552521|gb|AEA99239.1| Response regulator consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 226

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 129/224 (57%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  E         G  G       E DA+ILD+ L ++ GF
Sbjct: 1   MKVLLVEDDPKVASHIANGLLGEGHECITVGDGASGFNEASSNELDAVILDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV +LS  S +EDKV+GL++GA+DY++KPF  EEL+AR+  +  R++
Sbjct: 61  SVLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++LI  GDL+++L  + V      I L  KE+Q++E L   K   +T+ M L  ++
Sbjct: 121 DGEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +P+  +IDV I +LR+K+  A      IETV G GY + +
Sbjct: 181 NYHFDPQTNVIDVHISRLRQKVDKAFNVP-LIETVRGTGYRIAD 223


>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
 gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
 gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 240

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    + +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR++A++RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKVV 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +  HA+ ++  G   +NL  + +  +G  + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ L        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDG 237


>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
 gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
          Length = 248

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 21  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 81  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S +    L +N+      + G  + LT  E+ ++ +L       ++ E 
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++           I V I  LR+KL++ +    YI+T+WG GY +
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
 gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator
           protein [Photobacterium profundum SS9]
          Length = 231

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      ++  L    + V +   G +G+     + +D IILD+ L  + G+
Sbjct: 1   MKILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR +++STPV +L+    +ED+V+G + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 61  QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      + IV  DL +++  +T       I LT KEY ++ELL  ++   L++    
Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++D   + +  +IDV + +LR K+ +    K  I T+ G GY L +
Sbjct: 181 SLVWDMNFDSDTNVIDVAVKRLRSKI-DRPFEKELIHTIRGMGYKLED 227


>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 248

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 118/237 (49%), Gaps = 9/237 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   ++  L    + V     G + +E  +    D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKD 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 PVVGIPNSGVIQVGELRIDTNKRQVYRGEERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            ++    E   + +++DV I +LR KL +       I T  G GY+ +   +    E
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVEAVASE 246


>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
 gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
 gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
 gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
 gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 229

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 232

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V     GE+ +++         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 125 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 232

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 9/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   +   L  E++ V     GE  +++  +      IILD+ +  + G
Sbjct: 4   IKILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPKMNG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +EV R +R      P+ +L+     ED++ G + G D+YISKPF+ + LVAR+ AI+RR 
Sbjct: 64  WEVCREIRETS-KVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRI 122

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    +  G + ++  A TV V G +I L+ KE++++      +   L++E  LNH
Sbjct: 123 GKAPEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKD 227
           +++     + + ID  + KLR K+       +YI+T+WG GY     EN  D
Sbjct: 183 VWNYDYFGDARTIDTHVKKLRAKIGEKG---DYIKTIWGMGYKFEAEENGSD 231


>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
 gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
           11079-80]
 gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
           21]
          Length = 263

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 29  KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 89  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 148

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 149 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 208

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 209 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 260


>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 228

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  L   +   L+   F V V   G  G+       FDA++LD+ +  + G E
Sbjct: 4   RLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  K S P+ +L+      D+V GL+ GADDYI+KPF+  EL+AR+RA++RR+  
Sbjct: 64  VVRRIRQ-KSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRATP 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    IV GD+++++  + V V G    LTG E+ ++  L+ R    + +E  L     
Sbjct: 123 DAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEAGR 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G      + +DV I  LR+KLS+       I+TV G GYVL ++
Sbjct: 183 GDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVLAKD 226


>gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 224

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A+ ++  L    F+V + + GEDG+ L     +  IILD+ L    G+
Sbjct: 1   MRILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  LS    + D+V GL+ GADDY+ KP+   EL+ARIR I+RR  
Sbjct: 61  SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+Q++ L+  R+   L++      ++ 
Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LRKK+ +       I+T+ G GYVL E A
Sbjct: 181 INFDTDTNVVDVAIRRLRKKV-DDPFPVKLIQTIRGVGYVLDETA 224


>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +A  +   LK++ F V     GE  +       +D ++LDLGL    G 
Sbjct: 14  MRILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGV 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 74  DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 194 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 233


>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 774

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 117/222 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L   +   LK+ N+ V +   GE G    + +E+  +ILD+ L  + G 
Sbjct: 1   MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+   S EDKV GL +GADDY+ KP   EEL+AR+RA++RR+ 
Sbjct: 61  ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL++N     +  Q   + LT KEY ++EL         + +  + HL+ 
Sbjct: 121 ISLPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      +   I  LR KL +A G    IE V+G GY ++
Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIK 222



 Score = 97.6 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+ I DD  +   +E +L      V   +      ++ +    D +I+D+ +    G +
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        P+ +L+  +  E +    ++GADD+ISKP    EL+AR+ + + RS
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRS 606

Query: 120 R 120
           R
Sbjct: 607 R 607



 Score = 51.4 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +L+++ D  L   I     S      +         +   Y+   I+L+L        G 
Sbjct: 364 LLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGL 423

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
            +L  +       PV I S  SS  D++   + G+  ++ KP +  +++  +  I+
Sbjct: 424 MLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGIL 479


>gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment']
          Length = 225

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  ++  L  E   V + + G++G  L    ++D I+LD  L    G 
Sbjct: 1   MRLLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR   +STP+ +++   ++ D+++GL +GADDY+ KPF   EL+ARIRA++RR  
Sbjct: 61  QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   DL ++  +  V   G  I LT KEY +IE L+ R    +T+     H+++
Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I  LRKK+ +A    + I TV GRGY L E  +
Sbjct: 181 DEFDNLTNLVDVHISNLRKKI-DAGSTVSLIHTVRGRGYRLSEEQE 225


>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 283

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 57  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 117 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 176

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  +S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L+
Sbjct: 177 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 236

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +  +++++I  LRKK+   AG    I T  G GY+++ 
Sbjct: 237 RVWNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTRRGAGYLIKP 281


>gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3]
 gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3]
          Length = 234

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+        YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232


>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 242

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 15  ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 75  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 133

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  GD+ VN+  + V +    + LT +E++++ELL   +   L       
Sbjct: 134 SGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYE 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 194 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241


>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 223

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+  LA  +   L    + V     G D   L     +DA+ILDLGL  + G 
Sbjct: 1   MRILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+   S  +KV G+ +GADDY++KPF  EEL+ARIRA++RRS 
Sbjct: 61  TVLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH   ++V G +++      V V G  I LT  EY++++ L   +   ++K     H+Y 
Sbjct: 121 GHTSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LR+KL         IETV G GY LR  
Sbjct: 181 QDHDRDSNTIEVFVGRLRRKLGVD-----VIETVRGLGYRLRPP 219


>gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 224

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LDLGL  + G 
Sbjct: 1   MRLLVVEDDADLNRQLTEALTEAGYVVDRAFDGEEGHFLGDTEPYDAVVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G + ++L A  V V GH I LT  EY+++  L   K   +++     HLYD
Sbjct: 121 GHASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +   ++VF+ +LRKKL         IET+ G GY + +  +D
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGGEP-----IETIRGLGYRMGDPVED 222


>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ3810]
 gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus Peru-466]
 gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AN-5034]
 gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus AQ4037]
 gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus K5030]
 gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
 gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
           [Rhodococcus erythropolis SK121]
          Length = 237

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L  E F V +   G   +   + +E   I+LDL L    G E
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +  V +LS      DKV GL +GADDY+ KPF   ELVAR++A++RR R 
Sbjct: 73  VCRRIRTFSDAY-VLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++L     L +++ A+TV V    + LT  E+ ++  L+ R +   ++   +  +
Sbjct: 132 SSMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I+DV +  LR+KL + A    +I TV G GY LR
Sbjct: 192 WGSPWFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSLR 235


>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
 gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
           pseudomycoides DSM 12442]
          Length = 232

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +A  I + L+ E ++V     G++ I +      D +ILD+ +  + G+EV
Sbjct: 6   ILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKMDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRQIRAQ-YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLML 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S++  G + +  + +TV V   +I LT KE+ ++ LL+       + E   
Sbjct: 125 NQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENIF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 185 QQVWAEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|49477046|ref|YP_035262.1| two-component response regulator; MrsR2 protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|52144318|ref|YP_082509.1| response regulator [Bacillus cereus E33L]
 gi|49328602|gb|AAT59248.1| probable two-component response regulator; probable MrsR2 protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51977787|gb|AAU19337.1| response regulator [Bacillus cereus E33L]
          Length = 240

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    G+ GI +C+  + D I+LD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V   +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR  
Sbjct: 72  SVCEQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    ++   GD++++    TV   G  + LT KE+ ++  L    N   +K      +
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V +  LR+K+ +     NY+ TV G GY L
Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233


>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 238

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +LK E F  ++    G +GI+LCK  + D ++LD+ + D+ GF
Sbjct: 9   KILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      PV  LS  S   DK+  L  GADDY++KPF+ +E+  RI+A +RR+ 
Sbjct: 69  EVCKNIRNFSF-VPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  GD+ ++L+   V      + LT KEY ++  ++   N  LTK+M 
Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +++   E     I V I KLR+KL +      YI T  G GY L+
Sbjct: 188 CDEVWNDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKLK 235


>gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ ++A  + +  + E + V     GE+G+   K     FD I LDL L  + 
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163
           +   A++               + T    ++   +   + G +I  LT KE+ ++  LS 
Sbjct: 121 AEVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 SPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 238

Query: 224 NAKDE 228
           +  D+
Sbjct: 239 SGLDQ 243


>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
 gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
           avium 197N]
          Length = 232

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      E    L +    D I+LD  L  + G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMSGLSL 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + PV +L+   + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDIIDVGGLKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L    G   ++ETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-TGHDAHVETVRGSGYRF 225


>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 229

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMAHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 225

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +   V   G  G+   +  + D I+LDL L  + G EV
Sbjct: 4   VLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ A+++   PV +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RR  
Sbjct: 64  CRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRKL 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + I  G L ++++   V V G  + LT  E++++  L+ R     ++E+ L +++
Sbjct: 124 PASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + +D  + +LR KL  A      I+TV G GY L E+
Sbjct: 184 GYSYLGDTRTVDTHMTRLRTKLGAAG---ELIKTVRGFGYKLEES 225


>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 222

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  IE  L+S+ F   V         +     FD +ILDLGL    G +
Sbjct: 3   RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV IL+    I+DKV G ++GADDY++KPF  EEL+ R++A +R+S G
Sbjct: 63  VLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I +G++ ++L ++ V++    I L  +E+ + E         L++E  L+ +
Sbjct: 123 SQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LRKKL N       IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGND-----LIETVRGMGYRLR 221


>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 245

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 122/240 (50%), Gaps = 7/240 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHTEILNYGPLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L     ++T E   
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPKYIKTVYGAGYCLELPNTEKTLEVTS 242


>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
 gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   +   L  E F+V   + G+    L      D I+LDL +    G  
Sbjct: 10  KILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPT 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +++  G  + +L A+T+        LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LAQLARGREFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVFVPDG 241


>gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 135/231 (58%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ ++  +   L  +   V +   G DG  L   +++D I+LD+ L  + GF
Sbjct: 1   MKILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+   S+ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  SVLRALRKVK-ETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++     G RI LT KE+ ++ +++ R+   L+K      ++D
Sbjct: 120 AQEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +    +++V I +LR K+ +A   +  + TV G GYVL   A  ++ +
Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFEQKLLHTVRGMGYVLEPRATADSSD 229


>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 247

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L+  + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 23  RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 83  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 142

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   +SL+  GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 143 AAVRSESLLAVGDLTLDEDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG    I T  G GY+++ 
Sbjct: 203 WSYDFGGQANVVELYISYLRRKI--DAGRPPMIHTRRGAGYLIKP 245


>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 225

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +  D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 228

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   + L L     N       E    L +    D I+LD  L  + G E 
Sbjct: 5   ILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLPGMSGIEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +++   P+ +L+      DKVRGL+ GADDY++KPF+  EL ARI+A++RR  
Sbjct: 65  ARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G L ++     V   G  + L   E++++  L        ++   L+ ++
Sbjct: 125 PQMTDDPLEIGGLRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R   E + +DV I +LR+ LS  +G + +I+TV G GY  
Sbjct: 185 GDRVFVEDRTVDVHIRRLRRALSE-SGHEEFIQTVRGVGYRF 225


>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 233

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +   L+   + V +   G   +        D ++LDL L  + G E
Sbjct: 3   RVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV +L+ + +  D++ GL+ GADDY++KPF+  EL  R+++++RR+ G
Sbjct: 63  VCRRLRETG-SVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAG 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              S     I  G  +V+L A+ V  +   I LT +E+ ++  L        ++   +  
Sbjct: 122 PPTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFDLLAYLVRHPRRAFSRPELMEA 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I +LR+KL       + + TVWG GY       
Sbjct: 182 VWGWSY-GDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYEPPGP 229


>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
 gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
           20093]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+ +  + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGKPIDLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKN---------YIETVWGRGYVLREN 224
                +  I++ +I  LRKK+ +                IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDITVEDEDGTTHKVQPLIETKRGIGYMIRAP 241


>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 234

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ L   ++  L+ E + VY +  G  G+EL K    D ++LDL L ++ G E+
Sbjct: 10  VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  +  TP+ +L+   S ++K+ GL  GADDY+ KP +  E++AR++ I+RR    
Sbjct: 70  ARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q +I  G+++++  AK + ++G  I LT  E+ ++  L+L      ++E   + +
Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y    E + + ID  I  LR+K+        +I+TV+G GY  
Sbjct: 189 YGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231


>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 224

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+ +D+  +   +   LK E + +     G   ++L     + D IILD+ +    G+
Sbjct: 5   KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R +    P+ +L+      D++ G   GAD+YI+KPF+ + L ARI+A++RR +
Sbjct: 65  TVCREIRKSS-QVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRRVQ 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  ++     L ++   + V V G  + L+ KE++++  L+      L++E  LN ++D
Sbjct: 124 NNR-TVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +V+ +D  I KLR KL   +     I+TV G GY   
Sbjct: 183 YDYFGDVRTVDTHIKKLRLKLGEKSY---LIQTVRGLGYRFE 221


>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
          Length = 240

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRSS 126

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ L        YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVFVPDGE 238


>gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
 gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
          Length = 229

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  +EL L++E ++V     G++ +E  +    D  ILD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVMLPDIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +LR +R  K + PV +L+  +   DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 60  TILRKIRE-KYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYT 118

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +  ++++I    L +N ++         + LT  E++++ +L   +   ++ + 
Sbjct: 119 QYNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQR 178

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++           + V I  LR+KLS   G  + I+TVWG GY + E
Sbjct: 179 LFEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIEE 229


>gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens]
 gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2]
 gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance)
           [Serratia marcescens]
 gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1]
 gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894]
 gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii
           TW07627]
 gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2]
 gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 226

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 222


>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 238

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L EDD   A  +   L+ E   V V   GE  +   +  E D +ILD+ L  + G  V
Sbjct: 14  IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMNGLTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    P+ +L+  S+ +D ++GL  GADDY++KP++  EL+AR+R ++RR+   
Sbjct: 74  CRTIRASS-DLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNAA 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G L+V+ +   V V G+RI  T  E++++E+++ R +   T+   L HL+   
Sbjct: 133 KDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHGFD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + IDV +  LRKK+         + TV+G GY L
Sbjct: 193 RYITQRAIDVHVMNLRKKIETNPRKPAKLLTVYGVGYKL 231


>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
 gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
 gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
          Length = 243

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIRE-KYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I    L ++  ++ V++ G  I++T  EY ++ L++  KN   T E   
Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++ R       + V I +LR K+        +I+ VWG GY +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241


>gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 261

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED+  +   +E+ L+ E F+V       + ++L + +    IILD+ L D  G ++
Sbjct: 11  IMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVLDDGNGCDL 70

Query: 63  LRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            R +R              P+ ILS  +  ED++ G ++GADDY++KPF+  EL  RI++
Sbjct: 71  CRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFRIKS 130

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           I+RRS G + + I  G L ++   + V V  H + LT KE++++ LL+       ++E  
Sbjct: 131 ILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSREEL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK--NYIETVWGRGYVLRENA 225
           L  ++        + +DV + +LR KL  A  G   N I T WG GY L   A
Sbjct: 191 LERVWGYSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPA 243


>gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 228

 Score =  271 bits (694), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
 gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
          Length = 228

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  ++L L+ E + V +   G +G+E         ++LD+ L  + G E
Sbjct: 5   HILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGLSGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR     TPV +L+   SI DKV GL  GA+DY++KPF  EEL+ARIRA +R++  
Sbjct: 65  VLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +   DL VN   + V      + LT +E+ ++  +       LT+E  L+ +
Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  +RKKL +    K  I T+ G GY ++
Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGYAIK 227


>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
 gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 240

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 138/236 (58%), Gaps = 5/236 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L++  + V  ++ G++G+E     + D +ILDL L D+ G E+
Sbjct: 5   VLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  + +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR++
Sbjct: 65  CKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I  GD+ ++     V  +G  + LT KE+++++LLS  K   LT++  L+ 
Sbjct: 125 QVEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
           ++      E + +DV I  LRKK+ +      YIETV G GY LR+ ++D+  E  
Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKLRDLSEDKGEEDA 240


>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 246

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + +E+ +    + I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLREN 224
                +  I++ +I  LRKK+      + +G        IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMIREP 241


>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 236

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++ED++A+   + + LK   + V     GE  ++L + +  E    +LD+ L  I GF
Sbjct: 5   ILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPGIDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V R LR    +  + +L+  +   DKV GL  GADDY++KPF+  ELVAR+ A+ RR  
Sbjct: 65  AVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALYRRLN 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ IV+GD  +N  ++T   +G  I LT  EYQ+++      +T L++   L
Sbjct: 125 LEAGEKEDENGIVSGDFVLNTKSRTFYRRGQPIELTQMEYQIMKYFLENPDTALSRGDIL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           NH++      E+KI+DV I +LR K+        +I TVWG GY   +   
Sbjct: 185 NHVWGEDYFGELKIVDVNIRRLRMKVEEDPSAPRHILTVWGFGYKWSKGEP 235


>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 172560W]
 gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 229

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
 gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
           [Aminomonas paucivorans DSM 12260]
          Length = 235

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++++A  +   L+ + + V     G+  +E+ +    D +ILDL L  + G+E
Sbjct: 5   RILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLPKLDGWE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  + +   P+ +L+     +D V GL+ GADDY+ KPF+  EL+AR++A +R  
Sbjct: 65  VCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRAR 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A     I  G L++   +  V + G  + L+  EY+++E L   K   +++E  L  
Sbjct: 125 AQDALGDEGIAVGPLTLEPRSGEVLLDGTPLDLSPVEYRLLETLVRGKGRLVSREELLAK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      + + +DV I +LR+K+         + TV GRGY L    +D
Sbjct: 185 VWGY-VAGDTRTVDVHIFRLRRKIEPDPEHPRLVHTVRGRGYRLLWTPED 233


>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
 gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
          Length = 224

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D++ +   ++  LK +++ V +   GE+ I+L  K      IILD+ +  + G
Sbjct: 4   IKILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPKMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +  L+ +R      PV +L+  S   D+++G   GAD+YISKPF+ + LVAR+ A++RRS
Sbjct: 64  WTALKTIRE-HSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + L+  G + ++  A +V V G  I L+ KEY++++     K   L++E  LN+++
Sbjct: 123 GVQKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +      YI+TVWG GY   
Sbjct: 183 NYDYFGDARTIDTHVKKLRAKLMDKG---EYIKTVWGMGYKFE 222


>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 226

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 219


>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
 gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus BGSC 6E1]
 gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-42]
          Length = 232

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKAHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
 gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
 gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
 gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 268

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 222

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   I + L+   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   ++ G  + LT  EY+M+  L   K + +++   + HLYD
Sbjct: 121 GHASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKKL         IETV G GY +RE 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLGVD-----LIETVRGMGYRMREP 219


>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
 gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           furnissii CIP 102972]
          Length = 229

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEEA-GHDKLIQTVRGAGYRFSTKA 229


>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
 gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
          Length = 248

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    +NV     GE+ + L K    + I+LD+ +  + G+ 
Sbjct: 11  KILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDGYG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 71  VCQEIRKES-DVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G L+++++ + V    +RI LTG E+ ++ELL  +     ++   
Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 239


>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 223

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++V +   G DG+ L   ++FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR     TPV  L+    I D+V+GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLRKE-TDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H +  +   DL +++  + V   G+RI LT KE+ +++L +      L++ +  + ++D
Sbjct: 120 IHEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV + +LR K+ +       I +V G GY  
Sbjct: 180 MNFDSDTNVVDVAVRRLRAKI-DDPFPLKLIHSVRGIGYRF 219


>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
 gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
           20098]
          Length = 262

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L   NF V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 28  IVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 88  TRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 147

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L       L+K   L+H++ 
Sbjct: 148 TEEDPIIRVGDLEINEDSHDVTRSGQTIDLSPTEYKLLRYLMDNAGRVLSKAQILDHVWQ 207

Query: 181 GRDEPEVKIIDVFICKLRKKLS---------NAAGGKNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+          +       IET  G GY++RE 
Sbjct: 208 YDWGGDAAIVESYISYLRKKVDGIEVTDENGDKHKVTPLIETKRGIGYMIREP 260


>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus m1550]
 gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis Bt407]
 gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar thuringiensis str. T01001]
 gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 232

 Score =  271 bits (694), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
          Length = 229

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A  STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRAH-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 257

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E + V +   G + +        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 92  RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRAS 151

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL V+  ++ V      + L+  E++++  L       L++   L+ 
Sbjct: 152 QQPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   +G +  I TV G GY+LR 
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 255


>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 223

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +A  ++L L+ E +       G  G+E  K   +D ++LD+ L ++ G EV
Sbjct: 4   ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    STPV +L+  +SI DKV GL  GA+DY++KPF  EEL+AR+RA +R  +  
Sbjct: 64  LRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQSG 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   D  VN   + V      + LT KE+ ++      K   L +E  LN ++
Sbjct: 124 TEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  I+DV++  LRKKL  +      + T+ G GY L+E
Sbjct: 184 GFDYYGDTNIVDVYVRHLRKKLDLS----EVLVTLRGVGYRLKE 223


>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 231

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L+   F       G   + L +    D ++LDL L DI G +
Sbjct: 4   RILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDIDGAD 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + RA+R      + P+ +L+      D++ GL+ GADDYI+KPFN  E+VAR+RA++RR+
Sbjct: 64  LTRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G        +  G + ++ D   V V G  ++LT  E+ ++ +         T+   + 
Sbjct: 124 SGGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELIE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  E   + ID  I  LR+KL +   G   IETV+G GY L+
Sbjct: 184 EGVGYEYEGMERTIDSHIKNLRRKLESVDAGIR-IETVYGVGYRLK 228


>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
          Length = 226

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L 
Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYMLE 222


>gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
          Length = 227

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 2   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 62  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E         L + +  + ++
Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L 
Sbjct: 182 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYMLE 223


>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 236

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DAIILD+ +  + GF 
Sbjct: 11  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS R
Sbjct: 71  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           GH +   S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 191 VWRYDFGGDVNVVESYVSYLRRKI--DTGDKRLLHTLRGVGYVLREP 235


>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
 gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           loihiensis L2TR]
          Length = 228

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +++   +     +  +  ++       D ++LD  L    G +
Sbjct: 4   RILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + ++      + P+ +L+     EDKV+GL+ GADDYI+KPF+ +EL+AR+RA+ RR 
Sbjct: 64  LAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +    L ++  +  + V    I +   E++++           ++E  L+H+
Sbjct: 124 APTVLDEPLEVEGLKLDPVSHRISVDDKGIDMGPTEFKLLHFFMTHPERVYSREQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L+   G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALTEH-GYDRLIQTVRGVGYRF 225


>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 229

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
 gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 239

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIISFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 239

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 126/228 (55%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+  LA  +   L  E ++  V D G  G++      FD IILD+ L  + GFE
Sbjct: 4   KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   + TP+ IL+  ++ E+ V+GL+ GADDYI+KPF   EL+AR+ A++RR++ 
Sbjct: 64  ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++ +I  GDLS+  +   V + G  + L  KE++++  L  R    +T++  
Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +N ++        + +DV +  LRKKL    G    IE++ G GY L 
Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE--LGQSVQIESIRGVGYKLV 229


>gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 232

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           R+L+I+DD  L   ++  +K E     +T  G DG+         +  +ILD+ L  I G
Sbjct: 4   RVLIIDDDAELCALMKKCIKQEGLEADITYTGRDGLTKIAEQNGAYCLVILDVMLPGING 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+VL  +R      P+ +L+      DKV GL+ GADDY++KPF+  EL+ARI +++RR 
Sbjct: 64  FQVLSEIR-KGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRRY 122

Query: 120 RGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               QS    ++   ++ ++ + +TV V G  ++LTGKE+ ++  L+  K    TK+   
Sbjct: 123 TTFNQSTQLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +++G    +   I  FI KLRKK+        YI TV G GY   +  
Sbjct: 183 TQVWEGEYAFDDNNIMSFISKLRKKIEPDVEHPFYILTVHGVGYRFNKEV 232


>gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 219

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    + V   + G  G    +  E+D ++LD+ L    G+
Sbjct: 1   MRILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR +K STPV  L+    + D+V+GL+ GADDY++KPF+  EL ARI++I+RR +
Sbjct: 61  TLLQNLRRSK-STPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  ++D  I +LR K+ + A     I TV G GYVL
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVL 219


>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 238

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS       +    L ++  A+   + G R+ LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVELNPAQPTRILTVWGRGYKFAETGEGE 238


>gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A      L+ + F V +   G +G++  K   +D +ILD+ L  + G+ 
Sbjct: 3   KILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIMLPKLHGYN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V++++   +   PV ++S      DK++GL  GADDYI+KPF+  ELVAR+ A ++    
Sbjct: 63  VMKSI-QDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKNYER 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + I+   L V   ++ V + G  ++LT KE+ ++  L    N    +E 
Sbjct: 122 LKNKFGSKPQDNDIIIRGLQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRVFGREE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   I V I ++R K+ +      YIETVWG GY  R
Sbjct: 182 LFERIWGLEALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRFR 230


>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
 gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
           27560]
          Length = 231

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L  + + V     GE+ +++  +  + D IILD+ +  + G+
Sbjct: 11  KILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPKMDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R +R      P+ +L+  S   D++ G + G D+YISKPF+   LVAR+ AI+RR+ 
Sbjct: 71  EACREIRKIS-KVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTN 129

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  I   GD+ +N  A  V V+G  I L+ KE++++      K   L++E  LN+++
Sbjct: 130 NIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNNVW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     + + ID  + KLR KL        YI T+WG GY    N
Sbjct: 190 NYDYFGDARTIDTHVKKLRNKLGECG---KYIVTIWGMGYKFEVN 231


>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 231

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I+  LK E +++ V   G + + + +  +FD I+LDL L +I G E
Sbjct: 5   KVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     PV +++      DKV GL+ GADDYI+KPF+  EL+AR++A++RRS
Sbjct: 65  VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++I  GD+ VN   + V      + LT KE+++++LL   K+  LT+E+ L+ +
Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV I  LRKK+ +      YI+T+ G GY    N
Sbjct: 185 WGYEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230


>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ L   + + L+ E ++V     G D ++  + +  DA++LD+ + D+ G  
Sbjct: 19  RVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAARDFAPDAMVLDIMMPDLDGMA 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ LR +    PV  L+   ++ D+V GL +G DDY++KPF+ EE+VAR+R ++RR+  
Sbjct: 79  VLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRAGT 138

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++ ++  GDLS+N D+  V   GH I LT  E++++  L   +   ++K   L+ 
Sbjct: 139 ALTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQILDR 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        +++++I  LRKK+   AG    I TV G GY+++  
Sbjct: 199 VWNYDFGGRSSVVELYISYLRKKI--DAGHDPLIHTVRGVGYMIKAP 243


>gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 225

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA+ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQNGYAVDLSTDGEDGHYLGSTEDYDAVILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLGMWRKEGRRFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  GD+ ++  +  V   G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGDVRLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  270 bits (693), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA  I   L+ E F + V   G  G++  +  + D I+LDL L  + G EV
Sbjct: 4   VLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+ +  +   P+ +L+      D+V G + GADDY+ KPF+  EL+ R+RA++RRS 
Sbjct: 64  CRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRSS 123

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + I  G+L ++ +   V V G  + LT  EY+++  L+ R     ++E+ L ++
Sbjct: 124 EQTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +D  + +LR KL +A      I+TV G GY + E 
Sbjct: 184 WGYSYVGDTRTVDTHLTRLRTKLGSAG---ELIKTVRGFGYKIEEP 226


>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
 gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
          Length = 232

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++DD  +   I L LK E + V     G + I +    +   ++LD+ +  +
Sbjct: 1   MKQQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R +R  K + PV  LS  S+  DKV GL +GADDYI+KPF+  ELVAR++A +R
Sbjct: 61  DGVEVCRRIRE-KFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119

Query: 118 RSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R     Q       + I    L ++  ++TV + G  I+LT  EY ++ L++  +N   T
Sbjct: 120 RYTYFNQVPSEVHENKIQIRGLEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++  R       + V I +LR K+         I+ VWG GY + +
Sbjct: 180 LEEIYESVWRERAHESNNTVMVHIARLRNKIEENPKESTIIQNVWGVGYKIED 232


>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  +F V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR   
Sbjct: 63  VCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIGD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     + ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 EKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K+IDV I +LR K+ +      +IET+WG+GY  +
Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRAKIEDNPSEPEFIETIWGKGYRWK 228


>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
 gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
          Length = 252

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 19  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 79  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 138

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 139 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 199 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 249


>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pelagibaca bermudensis HTCC2601]
 gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. HTCC2601]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +    +   L++E F V     GE+ + +    E D I+LD  L ++ G EV
Sbjct: 8   VLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIEV 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   PV +LS  S   D+VRGL++GADDY+ KP++  EL+AR++A +RR+R
Sbjct: 68  CRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRAR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 128 PAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALGIYGGG-DPLRTVRGAGYAL 228


>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
 gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
           CIP 101886]
          Length = 238

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G   +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPASEEKVVEFGQFRLNLGTREMFRNDEPLTLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ +        YI+TVWG GYV   + +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSKPRYIQTVWGLGYVFVPDGE 237


>gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 640

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 125/222 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DD AL   +   L  + + V +   GE   E    + +D IILD+GL DI G 
Sbjct: 27  MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR  KI++P+ +L+   + + KV+ L +GADDY+ KPF+ EEL ARIRA+ RR  
Sbjct: 87  SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL V+ +   V  Q   + +T KEY M+EL     N   + +  +++L+ 
Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P    +   +  LR+KL      K++I+TV+G GY L+
Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLK 248



 Score = 95.3 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++ I+DD  +   ++ +L    F     +  +   +  +    D +++D+ + +  G E
Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR        P+  LS       + +    GADD+ISK     EL  R+   ++R+
Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632


>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 226

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ + + I + L++E F          G+ L +  E D IILD+ +  + G +
Sbjct: 4   RILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K + P+ +LS  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RR + 
Sbjct: 64  AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +     +I  GDL +N   + V V+G  I LT KE+ ++ELL   K T ++       
Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + V I K+R+K+ +      YI+T+WG GY +
Sbjct: 183 VWQEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 241

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I+  L  + + V   + G+  + L + +  D +ILD+ L D+ GF 
Sbjct: 7   KILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFEQFNPDLVILDVNLPDVIGFN 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++    V +L+  +   DK+RG   GADDY++KPF   EL  R+ AI+RR R 
Sbjct: 67  LCQEM-QSRNGVFVLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQRI 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V   L ++   + V +    I LT  E+ ++  L+        +   +  +
Sbjct: 126 VTTAEQKRLVFEKLMIDPARREVALNNQVIPLTALEFDLLHFLASHPGRVWRRAELIQEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     + +++DV I ++RKK+         I+TV G GY   
Sbjct: 186 WDYEYVGDQRVVDVHIGQIRKKIEIDVSQPALIQTVRGVGYKFE 229


>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 219

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 128/220 (58%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   LA  +   L  E + V     GE+G  L +   +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A IS PV IL+   +  +KV+G+ +GADDY++KPF+ EEL+AR+RA++RR++
Sbjct: 61  TVLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I  G + ++     V V G  I LT  EY+++  L  RK   +++     H+Y 
Sbjct: 121 GHASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   I+VF+ +LR+KL         I+TV G GY 
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIKTVRGLGYR 215


>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 234

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L   + +D I+LD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VARI+A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S       I  G   +N  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+        YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232


>gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 231

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ + + I L ++ EN+ VY    G + + + +  + D I+LD+ + ++ G 
Sbjct: 1   MNILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R    + P+  ++ M +  DKV  L  GADDY+ KP +  EL AR+ + +RR  
Sbjct: 61  SVIQKVRAIS-TIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCY 119

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +A+    +  TG+L +  +   V     +I L  KE+++++LL        TK+     
Sbjct: 120 KYAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEE 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +++     +   I V +  +R+K+ +      YI+T+ G GY +   A  E+
Sbjct: 180 VWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIERVAMHES 231


>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
          Length = 268

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
 gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDY++KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
 gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
           protein [Planctomyces maris DSM 8797]
          Length = 231

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 2/229 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L  E + V   + G  G  L     +D +ILD  L    G +
Sbjct: 4   RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR  R    +TPV  L+   ++ ++V GL +GADDY++KPF  +EL+AR+RA++RR   
Sbjct: 64  LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++   D+  +L+ + V   G  + LT KE+ ++          L++    + ++D 
Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +     ++V + +LR KL   A G   I+T+ GRGYVL   + DE  
Sbjct: 184 SYDGLSNTLEVHVKELRHKLE--ACGPRVIQTLRGRGYVLETTSDDEGA 230


>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 230

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  I L L+S+ + VY    GE+ +E  K  + D  ILD+ L  I GF
Sbjct: 1   MNILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ +R  + + PV +L+  +   DK+ GL  GADDYI KPFN  EL+AR++A +RR  
Sbjct: 61  EILKKIRE-RYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYT 119

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +R  +  +I    L +N ++        ++ LT  E+ ++ +L   +   ++ E 
Sbjct: 120 QYNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEE 179

Query: 174 FLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++  +        + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 LFENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230


>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 242

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 268

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 249

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 130/242 (53%), Gaps = 16/242 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L    + + V   G + +E  +  + D I+LD+ +  + G +
Sbjct: 6   KILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LR      P+ +L+ +  + D+++GL+ GADDY+ KPF+ +EL +RI+AI+RR+  
Sbjct: 66  VCQTLRE-STGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  G L +    + V + G RI LTG E+ +++LL  +   T+++
Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226
              L  ++        +++++DV + +LR K+ +++    YI T WG GY    +R+ + 
Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFFQKMRKKSP 244

Query: 227 DE 228
           ++
Sbjct: 245 EQ 246


>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
           CreC) [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi]
 gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhi str.
           Ty2]
 gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates pho regulon (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Enteritidis
           str. P125109]
 gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi C
           strain RKS4594]
 gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. D23580]
 gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. SL1344]
 gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 225

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   LK E +     + G   +++     + D +ILD+ L +  G+
Sbjct: 5   KILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPEYDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R  K STP+ +L+      D++ G   GAD+YI+KPF+   LVAR+ A++RR+ 
Sbjct: 65  TVCREIR-KKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRRAV 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                      L ++ +A  V +    I L+ KEY ++  L+      +++E  L+ ++ 
Sbjct: 124 PVDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I +LR KL       NY++TV G GY   
Sbjct: 184 YDYYGDLRTVDTHINRLRIKLD---SKSNYVQTVRGYGYRFE 222


>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
 gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +N           + IDV I +LR+ +        YI+TVWG GYV   +   E
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKE 239


>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
 gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar huazhongensis BGSC 4BD1]
          Length = 232

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
           MC2 155]
          Length = 239

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RRS  
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGEKRLLHTLRGVGYVLREP 238


>gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104]
 gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium
           104]
          Length = 254

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E + V +   G + +        D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 89  RILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRAS 148

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL V+  ++ V      + L+  E++++  L       L++   L+ 
Sbjct: 149 QQPAPTAETLKVGDLVVDTASREVTRGDTPVSLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   +G +  I TV G GY+LR 
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 252


>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 297

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R +++ED+  LA  +   L+   + V +   G   ++L +  + D +ILDLGL  I G E
Sbjct: 65  RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V +L+  S   D + GL  GADDY++KPF+  EL+AR++AI+RR R 
Sbjct: 125 VCRRLRTFS-DCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRP 183

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A +++  G LS++++A+ V ++   + LT  E+ ++  L+ R     ++ 
Sbjct: 184 KTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ ++      +  ++DV I  LR+KL + A    Y+ TV G GY +
Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292


>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
          Length = 232

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L+   + V     G + +        DA+I+D+ +  + G 
Sbjct: 3   MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ RRSR
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL+++   + V     RI LT  E+ ++ +        L +   L
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++          ++V+I  LR+K  +  G    I TV G GYVLRE
Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEARLIHTVRGVGYVLRE 229


>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 244

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 4/217 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A    L L+ + F V V   G   +   +     A++LD+GL+ + G E+
Sbjct: 27  VLVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGLSGMDGIEI 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR A   TPV  ++      D++ GL+ GADDY++KPF+  EL AR+R ++RR+ G 
Sbjct: 87  CRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASGS 146

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + +++  +        + LT  E+ ++  L       L+++  L+ ++   
Sbjct: 147 PATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWGYA 206

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                + +DV + +LR KL + +     I TV G GY
Sbjct: 207 AAAGTRTVDVHVAQLRAKLGDDS----PIRTVRGIGY 239


>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 238

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++++A   +  L+   + V V + G  G+      + D  ILD+ L    GFE
Sbjct: 12  KILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLPGTDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 72  ICKQVREVK-DIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLARYDR 130

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +  ++I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 131 LVSNSKNNNNIIEIRGIKIDKTARRVFVNGEEKPFTTKEFDLLTFLAENPNHVFTKEELF 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 191 KEIWDMDSIGDIATVTVHIKKIREKIELDTSKPQYIETIWGVGYRFK 237


>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
 gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-15]
          Length = 232

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+G+++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 224

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +  +L   N+ V + + GE   +     E+D +ILD+ L  + G 
Sbjct: 1   MRILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              +  R    +TPV +L+   ++ DKV GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  GFCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L +N     V      + LT KEY ++ELL       L++   +  ++ 
Sbjct: 121 ASVALNLSWGRLHLNPSTYEVTFDNRPLSLTPKEYALLELLVSNGRRVLSRTGIIERIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + +   I  LR KL  A    N+IETV G GY L++
Sbjct: 181 LEDPPSEETVKSHIKGLRAKLREAGAPDNFIETVHGLGYRLQQ 223


>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
 gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
 gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           sp. Ex25]
 gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   +   +    F        E+  +  + Y  D I+LD  L    G  
Sbjct: 4   KILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTSGVV 63

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR        P+ +L+      DKV GL+SGADDYI+KPF+  EL+ARIRA++RR 
Sbjct: 64  LAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRH 123

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++  + +G L ++  +  V  +G  I L   E++++           ++   L+ +
Sbjct: 124 IPTLSEDKVASGGLELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  +   E + +DV I +LR  L  A+G    I+TV G GY    N+
Sbjct: 184 WGTQVFVEERTVDVHIRRLRASLE-ASGLDGLIQTVRGSGYRFSTNS 229


>gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 235

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ ++  +   L+ + F+ ++T+   DG++  +  + D IILDL L D  G EV
Sbjct: 7   VLIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRELRTL-TSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q L+  G LS++  A+ V      I L+ KE+ ++  L+   N   TK   L+ 
Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E   I V+I +LR+KL  +     YI TVWG GY    +  +
Sbjct: 186 VWGYSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGYKFDPDETE 235


>gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 224

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++DD  + + +    ++E+         E+     +  + D I+LD+ L D  G 
Sbjct: 1   MKVLIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIMLPDANGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R      P+  L+   S  D + GL+ GADDY++KPFN   LVARI+A++RR+ 
Sbjct: 61  DLVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTE 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +  +  GD  VNL + TV   G    LT +E+++++LL+       T+E  L+ +
Sbjct: 121 ISGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV I KLR+K+        +I+TV G GY   
Sbjct: 181 WGMDFFGDFRTVDVHISKLREKVGEG-----FIKTVRGVGYKFV 219


>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
 gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
           14469]
          Length = 236

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  S+   +  + ++V+    G++ +E+ + Y    +ILDL L  + G E+
Sbjct: 9   VLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLMLPGMTGEEI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R      PV +L+  +  ED + GL  GADDY++KPF+ ++L AR+ AI+RR+   
Sbjct: 69  CQAIRRQS-RVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +           DL ++     V  QG  + LT  E++++  +        ++E  +  
Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +   ++ID  I  LRKKL        YI+TV+G GY  
Sbjct: 188 VFGPDFDSYDRVIDTHIKNLRKKLETNPKNPVYIKTVYGLGYKF 231


>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 230

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  ++L L+ E + V   D G + I L    +FD ++LDL +  I GFE
Sbjct: 6   RILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + ++  K    + IL+   +++DKV+GL  GADDY++KPF  EEL+ARIRA +R+   
Sbjct: 66  VCKRMKAQK-DVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  IV GDL ++   + V+     ++L+ KE+ +++ L+      L ++  LNH++  
Sbjct: 125 DLEQ-IVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                  ++DV+I  LR K+ +       + TV G GY L+ ++ ++ 
Sbjct: 184 DYYGSENVVDVYIRYLRAKI-DDPFENKILHTVRGVGYALKIDSNEKA 230


>gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
 gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp.
           SXCC-1]
          Length = 226

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 133/225 (59%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   LK     V +TD G+DG+ +    +FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    +TPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  VRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  A  Q+ +   DL ++L ++TV   G +I L  +E++++E L+      +T+ M L  
Sbjct: 121 RTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+    G    I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFGTP-LIHTIRNAGYMLR 224


>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 279

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 53  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 113 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 171

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 172 SITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 231

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 232 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 275


>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 226

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L ++ F V     GE+ ++      +   ++LD+ +  + G+
Sbjct: 5   KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  EVLKTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 124 VVSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+       +YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---DYIKTIWGMGYKFE 222


>gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 222

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/228 (38%), Positives = 132/228 (57%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   +   L+   + V     GE+G  L     +DA++LDLGL  + G 
Sbjct: 1   MRLLIVEDDKDLNRQLVTALEEAGYVVDSAFDGEEGHFLGDTEPYDAVVLDLGLPTLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 61  SVLEKWRRDGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++L A  V V G  I LT  EY+++  L   +   +++     HLYD
Sbjct: 121 GHASNELTCGNVRLDLRAGRVTVDGSPIKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   ++VF+ +LRKK+     G   IET+ G GY L E A+DE
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKI-----GAEMIETIRGLGYRLGE-ARDE 222


>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
 gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           parahaemolyticus 16]
 gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDEALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  AAG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AAGHDKLIQTVRGAGYRFSTKA 229


>gi|218441192|ref|YP_002379521.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173920|gb|ACK72653.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  +A  I   LK   + V +   G +G    +  E+D IILD+ L  I G 
Sbjct: 1   MRILLVEDEPGIAQFINQGLKETGYGVDLAIDGLEGKRYIESVEYDIIILDIMLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R  K  TPV +L+   SIED+V+GL  GADDY+ KPF   EL+ARIRA+ RR  
Sbjct: 61  TLLGEIRAKKNVTPVLLLTAKDSIEDRVKGLNGGADDYLVKPFAFSELLARIRALQRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL +NL  + V+     I L+  E++++E L    N  LT+      ++D
Sbjct: 121 LQFSTILQLEDLKMNLVTREVKRGDKIIDLSPLEFKLLEYLLRNANQVLTRTQIGEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                   ++DV+I  LR+K+         + T+ G GY L+    +
Sbjct: 181 LDFYTNSNVVDVYIGYLRRKIDRGFDN-QLLHTIRGVGYCLKPEGNE 226


>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +  +++  L+ E + V     GE+G++     + D ++LD+ +  + GF 
Sbjct: 3   RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   LR      P+ +L+    IED+V GL +GADDY+ KPF+ +EL+AR+RA++RR + 
Sbjct: 63  LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G++ +++  +T       +H T KEY M+ LLS      +++E FL+ ++
Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                P  + +D  I  LR K+ +      +I+TV G GY L 
Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225


>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 229

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  E + V     G + ++L  +  +   IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  QVCREVRETS-KVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTL 123

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G      +  G ++++  A  V++ G  + L+ KE++++      +   L++E  LN+++
Sbjct: 124 GAVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     + + ID  + KLR KL +      YI+T+WG GY     + +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIKTIWGMGYKFEVQSTE 228


>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
 gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
 gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
 gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
 gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
 gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 244

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 71  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 191 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 241


>gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565]
 gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565]
          Length = 218

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K LA  +   L+   F   +   G +   L +   +DAIILDLGL    G 
Sbjct: 1   MRILIVEDEKILAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR+ A+VRR+ 
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H+Y 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   ++VFI ++RKK        + IETV G GY + E
Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----TNPDLIETVRGLGYRINE 218


>gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 224

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED++ L   +   LK E ++V     G++ +E     E+D IILD+ +  + G+
Sbjct: 1   MRLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV  L+   +IED+V GL SGA+DY+ KPF+  EL ARIR ++R ++
Sbjct: 61  EVLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRLAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  GDL ++    TV      + L+ +EY ++E + L KN  L++E   NH++ 
Sbjct: 121 GSATTHLQAGDLILDTATHTVHRGEKLLLLSAREYALLEYMLLNKNIVLSREKIENHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    ++DV+I  LRKK+ +       I TV G GYVL+E +
Sbjct: 181 YEYEGGTNLVDVYISYLRKKV-DGGFSCKLIYTVRGSGYVLKEPS 224


>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
 gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
          Length = 245

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +  +I+  L+ E ++V     G + +++    +   +I+D+ +  + G  
Sbjct: 15  KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGMDGLS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R +K + P+ ILS  +   DK+ GL  GADDY+SKPF  +EL+AR+++ +RR   
Sbjct: 75  ATMKIRESK-NIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     + ++ G L+++LD K + V G  + +T  E++++ LL        + E 
Sbjct: 134 LGSKAAGPEDNNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++         + V I ++R+K+        Y++ VWG GY + +
Sbjct: 194 IYERVWEEAAYATENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243


>gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC
           BAA-895]
 gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895]
          Length = 232

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 127/228 (55%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 6   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 66  DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+++L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +   IDV + +LR K+ +       I+TV G GYVL     D
Sbjct: 186 DMNFDSDTNAIDVAVKRLRAKI-DNEFEPKLIQTVRGVGYVLEVPDGD 232


>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
          Length = 242

 Score =  270 bits (693), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 18  RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 78  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 137

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     + +   DL ++ D + V   G  + L+  E+ ++    +   T L+K   L+H+
Sbjct: 138 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     EV +++ ++  LR+K+         I T+ G GYV+RE 
Sbjct: 198 WNYDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 241


>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 219

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 87/220 (39%), Positives = 129/220 (58%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  EN+ V + + G+ G++      +D IILD+ L  I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRAI+RR    
Sbjct: 64  CRRIRQQ-YTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRR--QP 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + ++ +A  V V G ++ LT  EY ++ +L+  +N  L +E  L+H++   
Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      +  IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKP-FNKERTIETVRGVGYVIR 219


>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
           [Mycobacterium abscessus ATCC 19977]
 gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
           transcriptional regulatory protein) [Mycobacterium
           abscessus]
          Length = 230

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+A+  S+   L    ++V + + G D + +      DA++LD+ +  + G E
Sbjct: 4   RILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+  
Sbjct: 64  VCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTTI 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  GDL+++   + V      I LT  E+ ++E+L       LT+   L  +
Sbjct: 124 DESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRILEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 184 WGFDFPTSGNALEVYVGYLRRK-TEAEGELRLIHTVRGVGYVLRETPP 230


>gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
 gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum
           centenum SW]
          Length = 225

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +   LK     V     G+DG+ L     +DA+++D  L    G 
Sbjct: 1   MKILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRMLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      P  +LS +SS+ED+V+GL++GADDY+ KPF   EL+AR+ A+ RR+R
Sbjct: 61  SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + +   DL ++L A++V   G  + L  +E+ ++E L       +T+ M L  ++
Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV I +LR+K+         I TV G GYVLR   
Sbjct: 181 DYHFDPQTNVIDVHIARLRQKIDKDHPAP-LIHTVRGAGYVLRAPG 225


>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
          Length = 232

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      +    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E + +DV I +LRK L   +G   ++ETV G GY       
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRFTAQVP 230


>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
          Length = 229

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL++DD  +     + L+   F+V     G   +   + +  D ++LDL L ++ GF+VL
Sbjct: 2   LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
             +R  +   PV +L+ +   ED++ GL  GADDY+ KPF+  ELV+R+RA++RR   + 
Sbjct: 62  AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+    L V++  + V+     ++LT +E+ ++  L+       ++E  L+ ++ 
Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + + + +DV + +LR+KL  +     Y+ETVWG+GY     A+
Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKAR 227


>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 224

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+  A SI+L L+ + F   +   G   +ELC+    D +ILD  L  + G E
Sbjct: 3   RILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDGAE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  + P+ +L+  ++  DK+ GL+ GADDY++KPF+  ELVAR+ A++   R 
Sbjct: 63  ICRRLRAAG-NIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL--RRA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                     ++++ +  T+   G  I LT  E++++E L        ++   L  ++  
Sbjct: 120 APAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFGW 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E   + +DV I  LR+K+ +       I T++G GY  
Sbjct: 180 DYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGYKW 219


>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
 gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
           TW07627]
 gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
 gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 239

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 268

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
 gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR    
Sbjct: 64  CKIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSAD 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  ++ ++
Sbjct: 123 NSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas
           putida KT2440]
 gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V     G DG+ L K +E++ IILD+ L ++ G+
Sbjct: 1   MRILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR     + + +L+  S + DKVRGL++GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QVLELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSD 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   +I   DL ++         G RI LT KE+ ++  L       L++   ++ ++
Sbjct: 121 HPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +++V I +LR K+ +       I T+ G GYVL +
Sbjct: 181 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLEK 223


>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
 gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
 gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Dickeya dadantii 3937]
          Length = 239

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
 gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
           str. 1873]
          Length = 223

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +   ++   K E F V+  + G  G+E+ K    D +ILD+ +  + G+
Sbjct: 1   MNILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +++R      P+ +L+     EDK+ G + GADDY++KPF+ + LVA+++A+++RS 
Sbjct: 61  KVCKSIRDLS-KVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSV 119

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++I    L +N  +  V++ G  I L+ KEY ++      K+  L+++  L+ 
Sbjct: 120 IDIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +  ++ +D  + +LR+KL + +   NYI TV G+GY    N
Sbjct: 180 VWGFDYDGGLRTVDTHVKRLREKLKDKS---NYIVTVRGKGYKFEVN 223


>gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 228

 Score =  270 bits (693), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 231

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +A  ++  L+ +   V     G++GIE  K    D I+LD+ + DI G+E
Sbjct: 3   KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIMMPDIDGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  LS   S  D+++G   G DDY+ KPF+ +EL+ARI A +RR + 
Sbjct: 62  VCRKIRDT-VICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++L+   +++++L ++ V V+G+ I LT KE+ ++ELLSL      +KE  
Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++    E +   +   I  +R K+        YI+TVWG GY   +
Sbjct: 181 YEKVWGFDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGYKWEK 229


>gi|228913685|ref|ZP_04077312.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|301052645|ref|YP_003790856.1| transcriptional regulator [Bacillus anthracis CI]
 gi|228845973|gb|EEM90997.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|300374814|gb|ADK03718.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 240

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    G+ GI +C+    D I+LD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVRPDLILLDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V   +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR  
Sbjct: 72  SVCEQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    ++   GD++++    TV   G  ++LT KE+ ++  L    N   +K      +
Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLNLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V +  LR+K+ +     NY+ TV G GY L
Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLVTVRGLGYKL 233


>gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
 gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1]
          Length = 223

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ L   I+ ML+ E  +V     G+D     K   +D ++LD  +  + G 
Sbjct: 1   MRILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWMMPAMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   +  P+ +L+   ++ED+V+GL +GADDY+ KPF   EL+AR+RA+ RR +
Sbjct: 61  ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL +N +  +V   G  I LT +E+ +++LL   K   L +E+ +  ++
Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +     +D +I  LRKK+    G    I  + G GY L E
Sbjct: 181 GLDADVTDNTLDAYIRLLRKKIEP-PGAAKLIHNIRGVGYTLEE 223


>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 225

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 75/218 (34%), Positives = 131/218 (60%), Gaps = 3/218 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD+ L  ++E   + E F V +   G   ++  K   +D IILD+ +  I G +V 
Sbjct: 6   LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVKVC 65

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + LR+     P+ +L+  S +EDK+ GL++GADDYI+KPF+ +EL+ R++ ++RR     
Sbjct: 66  KQLRLQS-EIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQ 124

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           +  IV  DL+++L    V  +G  I+LT KE++++++L+   N T+ +E+ LN ++    
Sbjct: 125 EEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIAS 184

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +  I+DV+I  +R KL +       I T+ GRGY+L
Sbjct: 185 DYDSNIVDVYIKNIRNKLEDKP--PKLILTIRGRGYML 220


>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
          Length = 236

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      E    L +    D I++D  L    G  +
Sbjct: 5   ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSSGINL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G+L ++     +  QG  + +   E++++           T+   L+ ++
Sbjct: 125 PQLTDDVISIGNLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G   +IET+ G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDKHIETIRGSGYRF 225


>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
 gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 248

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED++AL   ++  L+SE + V V   GE  + + +  + D ++LD  L  + G EV 
Sbjct: 24  LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83

Query: 64  RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           R LR    +   P+ +L+  +   D++RGL +GADDYI KPF+  EL ARIRA++RR R 
Sbjct: 84  RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +V GDL V+  A  V   G ++HL   E+++++ L        ++E  L+ ++ 
Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                E + +DV + +LRK L    G  + I TV   GY L    K
Sbjct: 204 SDIYVEARTVDVHVGRLRKALKME-GLVDPIRTVRSAGYALNAGEK 248


>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 225

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +  D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-EVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 223

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G + ++  +    V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSELVCGPVRLDTKSSKATVNGTTLKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKK+         IET+ G GY ++  A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGVD-----LIETIRGLGYRMQAPA 220


>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 233

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  K    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                    + +DV I KLR+K  + AG    I+TVWG+GY+   +  +
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232


>gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes
           str. Scott A]
          Length = 228

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 304

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F+  V   G + +   +  + D I+LDL L  + G +
Sbjct: 82  KILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGID 141

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +    P+ +L+  +   D V GL+SGADDY++KPF  +ELVAR+RA +RRS  
Sbjct: 142 ICKTIRRSSP-VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 200

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   +L++++ + TV      + LT  E+ ++  L  +     T+E  L  ++  
Sbjct: 201 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWGY 260

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   + ++++V + +LR K+         + TV G GY 
Sbjct: 261 KHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 299


>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
 gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
           fischeri MJ11]
          Length = 230

 Score =  270 bits (692), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  + L      D I+LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  + +   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + + LI    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  A G    ++TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AEGHDRLVQTVRGAGYRFSVQA 229


>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
 gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pakistani str. T13001]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
 gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
           marinus str. MIT 9301]
          Length = 242

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           RILL+EDDK++  ++   L SE F V     G   ++        + D IILDL L  + 
Sbjct: 13  RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R  +  TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA++RR
Sbjct: 73  GLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRR 132

Query: 119 SRGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S+ + +++      I    + + L+   V      I L+ KE++++EL         +++
Sbjct: 133 SKRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVWSRD 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L  +++     + K +DV +  LR+KL        +++TV G GY  
Sbjct: 193 LILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 242

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           +ILLIEDDK++  ++   L SE F V     G   ++        +FD I+LDL L  + 
Sbjct: 13  KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R  ++ TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA++RR
Sbjct: 73  GLELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRR 132

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S+   +      ++I   ++ +  +   V      I L+ KE++++EL         +++
Sbjct: 133 SKRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRD 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L  ++      + K +DV +  LR+KL         I+TV G GY  
Sbjct: 193 LILEKIWAIDFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRF 241


>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L    + V     GE+ ++     +  + ++LD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R      P+ +L+     +D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVVKEIRKVS-KVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G + +++    V + G  I+L+ KE+++++     +   LT+E  LN +++
Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR KL        YI T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS---YIHTIWGMGYKFE 222


>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 233

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  + + + + L  E F+V     G +G++  +    D ++LD+ + D+ G++
Sbjct: 5   RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    ++DKV GL  GADDY+ KP + EEL+ARI A++RRS  
Sbjct: 65  VCKKMREIAP-VPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSSH 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A     +  +   DL++  + + V V    I LT KEY +++LL+     T  ++  + 
Sbjct: 124 QAHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAIVE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+      E ++ID  I  +R+KL       N I+TVWG GY   +++
Sbjct: 184 RLWGNDFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGYKWDDSS 232


>gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 232

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V     GE+ +++         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  +N   T E   
Sbjct: 125 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 226

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+K L   +E +L  E ++V + D G  G+EL +   +D +ILD  L    G 
Sbjct: 1   MRILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR    +TPV  L+   +I+D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  QICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ + +     G  I L+ KE Q++ L        LT E    H
Sbjct: 121 NFEASNSSKLKCADLELDSENQVAYRHGRTISLSAKEIQLLTLFMTYPGQLLTHEQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+   ++P   ++   +  LR+K+         I TV+G+GY   EN
Sbjct: 181 LWSEGEQPNSNVVPALMRLLRRKIEADGETP-LINTVYGKGYRFGEN 226


>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
 gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 232

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+  +   G   +      E D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKELRSVS-TVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVT 122

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G + +++D+ TV V G  + +  KE+ ++E L       LT+  
Sbjct: 123 ETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ ++      + K +DV + +LR K+        Y+ TV G GY   
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231


>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
 gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
          Length = 228

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I + L++E+      +   + ++L +  EFD IILD+ + ++ G E
Sbjct: 4   KILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  + + P+ +LS  S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR + 
Sbjct: 64  ACMKIREDR-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       +S++  GDL+VN D   V V+G    LT KE+ ++ELL+  K + L+     
Sbjct: 123 YNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I K+R K+   +    YI+TVWG GY +
Sbjct: 183 ETVWKEVFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228


>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
           CB15]
          Length = 230

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L  E + V V   GE+ + +      D +ILD  L  + G EV
Sbjct: 5   VLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+      D++RGL +GADDY+ KPF+  EL AR+RA++RR R
Sbjct: 65  CRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  GD+ ++  A  V+  G  IHL   E+++++ L        ++E  L+ ++
Sbjct: 125 PGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK+L N     + I TV   GY L  +A
Sbjct: 185 GSDVYVEARTVDVHIGRLRKEL-NGTTDADPIRTVRSAGYSLDMDA 229


>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 246

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 18/236 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ +D++ +       L+ E   V+V + GE+ I L K +  D ++LDL +  + G EV
Sbjct: 5   IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R     TP+ +L+      D++ GL  GADDY++KPF+  ELV R+  I+RR+   
Sbjct: 65  CDLIRQT-DDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123

Query: 123 AQ-----------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           ++                   I    LS+    + V V    + LT KE+ ++ LL++  
Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++   LN ++D   + +   + V + +LR+K+        +I+TVWG GY L
Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239


>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
           freudenreichii subsp. shermanii]
 gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 242

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L ++D+ +L   + + ++ E +       G D +   +    DAI+LD+ L D  G 
Sbjct: 18  IRVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R  +   PV  L+   ++ D++ GL +G DDY++KPF+ EEL+AR+R+++RRS 
Sbjct: 78  EVMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++S ++ GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 138 ATSKRSESELIVGDLVLDEDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+   AG +  I T+ G GYVL+ 
Sbjct: 198 VWNYDFGGQANVVELYISYLRKKI--DAGREPMIHTMRGAGYVLKP 241


>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G D +     +  D ++LD+ L D  GF 
Sbjct: 10  RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+   ++ED++ GL +G DDY++KPF+ +E+V R+RAI+RR R 
Sbjct: 70  VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +   DL ++ +A  V   G  + L+  E++++  L +     +++   L+ 
Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++     + ++++ +I  LR+K+   +     I T+ G GYVLR    ++
Sbjct: 190 VWNYEFGGDSRVVESYISYLRRKI--DSTAPPLIHTIRGVGYVLRLPPDEQ 238


>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 231

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++   +++  K  NF V     GE+G+   +    D ++LD+ L  I GF+
Sbjct: 4   KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+      DK++GL+ GADDY+ KPFN  EL+ R ++++RR  G
Sbjct: 64  VCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLGG 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +     +  + +G   + L ++ V  +   I LT KE+ ++++    KN   T++  L+
Sbjct: 124 KSAGDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I +LR K+ +      YIETVWG GY  R+ 
Sbjct: 184 KIWGYDYVGDTKIVDVNIRRLRSKIEDKDSHGMYIETVWGIGYRWRKE 231


>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
          Length = 253

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL ++DD+A+  S+   L    ++V + + G + +E+      DA++LD+ +  + G E
Sbjct: 27  RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+ARIRA++RR++ 
Sbjct: 87  VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTKP 146

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   DL+++   + V      I LT  E+ ++E+L       LT+   L  +
Sbjct: 147 DDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEV 206

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 207 WGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRETPP 253


>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED++ +A      L+S  +   +   G+ G+      ++D IILDL L +  G
Sbjct: 1   MKTILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ R +R      P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R 
Sbjct: 61  FEICRRIRQE-ADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARY 119

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+  +    L++N   + V ++   + LT KE+ ++ LL+   N   TKE 
Sbjct: 120 DRLTGDSREARESLTIRGLTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      E   + V I +LR+K+        YI+TVWG GY L+
Sbjct: 180 LFERVWGLESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRLK 228


>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
 gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
 gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
           23685]
 gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
           FL6-60]
          Length = 239

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEDAVINFGKFKLNLGTREMFRDDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 234

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+        YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232


>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 227

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +LK E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CRRLRQVS-TVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  ++  G +S++++   V V G ++ +  KE+ ++E L       LT+   ++ +
Sbjct: 123 DGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+         + TV G GY   
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++ L   I+  L+ E F  +      +DG ++ + +     ILD+ L D  G+
Sbjct: 5   RILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R    + P+  LS  S   DK+ GL  G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 65  QLCQQMRAQS-NIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G   +N D   V V G R+ LT KE  ++       N  L+KE     
Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + V I +LR+K+        YI+TV G GY L
Sbjct: 184 VWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227


>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
 gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V V    E    L     +  ++LDL L    G  
Sbjct: 7   KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR    + PV +L+      D++ GL+ GADDY++KPFN  EL+ARIRA++RR   
Sbjct: 67  ICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRGV 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ L        YI+TVWG GYV   + K
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVFVPDGK 238


>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  +E+ LK+EN++V V   G   ++  + + +D  ILD+ L D+ GF
Sbjct: 1   MNILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R    + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RR +
Sbjct: 61  TICKTIRQKH-TWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRRYK 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +    L +N D     +    + LT  E++++  L  R+   ++ +    
Sbjct: 120 RYNVQQKAQELSYLGLVMNRDLHICRLNEKDVFLTPIEFRILWYLCERQGKVVSAKELYT 179

Query: 177 HLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++           + V I  +R+K+ +      YI+ VWG GY L ++
Sbjct: 180 AIWQEEYLTSSNNTLMVHIRHIREKMHDRGEHPRYIQNVWGVGYKLGDS 228


>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++++EDDK L   +E+ L+   ++V   + G D IE  K    + +ILD+ L D+ G+E
Sbjct: 6   KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K    + +L+ +   +DK+ G ++GADDY++KPF+ EEL+ARI+A++RR   
Sbjct: 66  VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G L +  + +TV   G  + L+  E+ ++  L+  K+  ++KE  L+ ++  
Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   ++V++  +RKKL         I+T+ G GY L 
Sbjct: 186 DYYGSDNTVEVYVNYIRKKL-----SPELIKTIRGVGYKLV 221


>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 246

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ GF+
Sbjct: 21  RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR    S PV  L+   ++E++V GL  G DDY++KPF+ EE++AR+RA++RRS  
Sbjct: 81  VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 140

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++++  GDL+++ D+  V      I LT  E++++  L       L+K   L+ 
Sbjct: 141 AVAARQEAVLTVGDLTLDEDSHEVRRGDDLITLTATEFELLRYLMRNPRRVLSKAQILDR 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+   AG    I T+ G GYVL+ 
Sbjct: 201 VWNYDFGGQANVVELYISYLRKKI--DAGRAPMIHTLRGAGYVLKP 244


>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 221

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR +
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A  + V GDL V+  A+ V +    + LT KE+ ++E L LR    ++K   L H++
Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   E +  I++V++  LR+KL         I TV G GY L 
Sbjct: 181 DFAYEGDPNIVEVYVSALRRKLRAG-----LIRTVRGAGYRLE 218


>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 230

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/234 (34%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  LA  +   L+ E F V     G  G+E       D ++LD+ L  I GF
Sbjct: 1   MHILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR      PV +L+      D++ GL+ GADDY++KPFN  EL ARIRAI+RR  
Sbjct: 61  EILKRLRQRS-KVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYE 119

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    I T  + ++   + V   G +I LT  E+ ++E+L       L+++  + +
Sbjct: 120 RDTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMEN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            Y+ +  P  + ID+ I  LRKKL N   G + I+T+ G GY      +D   E
Sbjct: 180 FYNRKATPFDRSIDMHISHLRKKLEN---GDDLIKTIRGVGYQFCRTPEDAAAE 230


>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
 gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIERDPANPRYIQTVWGLGYVFVPDG 237


>gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1]
 gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32]
 gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR
           [Shewanella putrefaciens 200]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTL 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    ++ I  G+ S++L  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPAQQEAEISFGEFSLDLATREMYHGDEAIALTSGEFAVLKVLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 225

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  ++  L+   ++V V + G  G+ L +  ++D IILD+ L  + G+
Sbjct: 1   MRILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVMLPWMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR  + +TPV  L+    + D+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVVKTLRATR-ATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI  GDL ++++ + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +    K  I TV G GYVL 
Sbjct: 180 MNFDSDTNVVEVAIRRLRSKVDDNFPVK-LIHTVRGVGYVLE 220


>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
          Length = 227

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ + +  +  +L  E + V V D G   +        D ++LDL L  + G E
Sbjct: 3   RILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV K S P+ +L+   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR+  
Sbjct: 63  VCRELRV-KSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++  G + ++++   V V+G  + +  KE++++E+L       +T+   ++ 
Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV + +LR K+         + TV G GY   
Sbjct: 182 IWGEDYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGYKFE 226


>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
 gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
 gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
 gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
           CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella pneumoniae 342]
 gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. 1_1_55]
 gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
           [Klebsiella sp. MS 92-3]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis KIM 10]
 gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
 gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
           10]
 gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
           D106004]
 gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
           D182038]
 gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis KIM D27]
 gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
           Z176003]
          Length = 239

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 235


>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 5/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D+K +   +   L    +       G   +++ +    D IILDL L D+ G
Sbjct: 1   MKNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    + P+ +L+       ++ GL  GADDY+ KPF+  E+VAR++AI+RRS
Sbjct: 61  EEVCREIRRQS-AVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRS 119

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +     GDL V+   KTV   G  +HLT  EY++I++L+       ++E  + 
Sbjct: 120 ADDLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+      + + ID  +  LR K+        Y +TV+G GY   
Sbjct: 180 KLFGFDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGYRFE 225


>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  +   L  E F V   D G  G E      +D I+LDL L  + G +
Sbjct: 4   RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   ++TP+ IL+  +   + V+GL+SGADDYI+KPF   EL+AR+ A++RR+ G
Sbjct: 64  ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S I  G+L +  +   V + G  I L  KE++++  LS +    LT++
Sbjct: 124 GDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPDS-VHIDSIRGVGYKLVVNKK 236


>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
 gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 605]
          Length = 263

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 38  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 98  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 157

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 158 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 217

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        I+D++I  LRKK+   +  +  I TV G GY+LR  
Sbjct: 218 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPP 262


>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 240

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+D+K L   +    + E F+V V   GE+ + + +   FD IILDL L  I G 
Sbjct: 17  MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R       + +L+      DK+ GL+ GADDY++KPFN  EL+AR+R ++RR  
Sbjct: 77  TLCNRIRQQS-DVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQE 135

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +      DL V++ ++TV      I+LT KE+ ++ LL   K     +E     +
Sbjct: 136 KGEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + IDV +  LR+KL +       IET WG GY  R++
Sbjct: 196 WGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240


>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 248

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI   DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 DVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
 gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Citreicella sp. SE45]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V     GE+ + +      D I+LD  L ++ G EV
Sbjct: 8   VLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIEV 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   PV +LS  S   D++RGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRAR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 128 PAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALGVHGGG-DPLRTVRGAGYAL 228


>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
 gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           aldovae ATCC 35236]
          Length = 260

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 35  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWMLPGGSGIQ 94

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 95  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 154

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    H + +   E++++           ++E  LN++
Sbjct: 155 SPMAVEEVIEMQGLSLDPSSHRVMSNEHALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 214

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 215 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 256


>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
 gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock4-2]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 3   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 63  VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 123 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 183 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 224

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E ++V     G D ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I+L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGEQVINLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 221


>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+ +A  +   L  + + V +    E G++  +   FD +ILDLGL  + G 
Sbjct: 1   MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + +R    S P+ IL+   +  DKV GL +GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ D   V      +HLT KEY ++E+L    +  L++   +++ + 
Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + P  + + V +  LR KL       N IETV+G GY L  N
Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRLNPN 224


>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
 gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
           L2-32]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 126/233 (54%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQQQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK     + +  G K      IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMIRAP 241


>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 263

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 126/226 (55%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +   +E  L    F + V   G  G EL     +DAII+D+ L  + G 
Sbjct: 32  MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   I TPV ILS   S+ D+V GL+ G DDY++KPF   EL+AR+ +++RRS+
Sbjct: 92  EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            + ++  +  GDL ++L ++ V        L  +E+ ++E L   K   +T+   L +++
Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                P   +++V IC+LR+KL         ++T    GY L E++
Sbjct: 212 GYNFVPATNVVEVHICRLREKLER-PNKPRLLQTFRKAGYALVEDS 256


>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
 gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 221

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+ +      D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR  
Sbjct: 61  RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++  GDL V+  A+ V V      LT KE+ ++E L++R    ++K   L H++
Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  II+V+I  LR+KL     G   I+TV G GY L 
Sbjct: 181 DFAYDGDPNIIEVYISSLRRKL-----GAPRIQTVRGAGYRLV 218


>gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 225

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ ED++ + + +EL L  E + V+    G + +++ K       +LD+ +  I GF
Sbjct: 1   MNILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEHIHLALLDVMMDGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR      PV  L+     +DK+ GL  GADDY+ KPF   EL+ARI++ +RR  
Sbjct: 61  NLLKMLREWS-QIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCY 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++    LI  G+L ++ +  TV+  G  + L  KE++++E+L        TK+    ++
Sbjct: 120 KYSGENELIKIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +   I V I  LR K+         I+T+ G GY   +
Sbjct: 180 WQEEYLGDDNTIMVHISHLRDKIEEDPKNPCKIKTIRGIGYRFEK 224


>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
 gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
          Length = 225

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D++ +   + + LK + F V     G + I+  + +  DA+ILD+ +  + GF+ +
Sbjct: 2   LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDAV 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----S 119
           + LR      PV  L+   ++ED+V GL  GADDY++KPF+ EE+VAR+R I+RR    S
Sbjct: 62  KRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGTLS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++ D+  V   G  + L+  E+ ++  L L   T L+K   L+H++
Sbjct: 122 AAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +  +++ ++  LRKK+         I T+ G GYVLRE 
Sbjct: 182 DYDFGGDGGVVESYVSYLRKKI--DTAEPRLIHTIRGVGYVLREP 224


>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
 gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus F65185]
 gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH676]
          Length = 232

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I L LK   F V     GE+ +++      D  +LD+ L  I G E
Sbjct: 6   KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R       + +L+     EDKV+GL  GADDYI+KPF+   L ARI++++RR   
Sbjct: 66  VCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRRIEV 125

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H +  +++ +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++
Sbjct: 126 HEEKTNIVTSGPFSLNIIEERLYKDGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 186 GTNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
 gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
          Length = 233

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           +++L+++D+  +   ++  L  + + V     GE+ +++     +   IILD+ +  + G
Sbjct: 4   IKVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E  + +R      P+ +L+  S   D++ G + G D+YI+KPF+ + LVAR+ AI+RR+
Sbjct: 64  WETCKEIRKFS-QVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRT 122

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A S+I  G ++++L A  V + G  I L+ KE++++    + K   L++E  LN++
Sbjct: 123 SDVPADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++     + + ID  + KLR KL +     +YI+T+WG GY    + +
Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLKDKG---DYIKTIWGMGYKFEVDDE 227


>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
 gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++   + + L+ E ++V     G  G+        D ++LD+ L ++ GF+
Sbjct: 7   RILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR     TPV +LS      DK+ GL  GADDY+ KPF  +EL+ARI+A++RR   
Sbjct: 67  VLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRHP 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  GD+ V++  KTV   G  + LT +E++++         T ++E  L+  + 
Sbjct: 127 ASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + +D F+ +LR K         +  T+ G GY  
Sbjct: 187 FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGYRF 227


>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
 gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
           [Loktanella vestfoldensis SKA53]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+SE F V     G + + L +  + D I+LD  L    G E+
Sbjct: 8   VLVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLPGTSGIEI 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +  R A   TPV +LS  S   DKVRGL++GADDYISKP++  EL+AR++A +RRSR
Sbjct: 68  CRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRSR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  ++  D+ ++ +   V    + + L   E++++     +     +++  L+ ++
Sbjct: 128 PATMGERLIYNDILLDSETHKVFRGENELKLGPTEFRLLTTFMEKPGRVWSRDQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L +  GG++ I TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHVGRLRKVLGSH-GGEDLIRTVRGAGYAL 228


>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 245

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +  +I+  L+ E ++V     G + +++    +   +I+D+ +  + G  
Sbjct: 15  KILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGMDGLS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R +K + P+ ILS  +   DK+ GL  GADDY+SKPF  +EL+AR+++ +RR   
Sbjct: 75  ATMKIRESK-NIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    ++ ++ G L+++LD K + V G  + +T  E++++ LL        + E 
Sbjct: 134 LGSKAAGPEDKNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++         + V I ++R+K+        Y++ VWG GY + +
Sbjct: 194 IYERVWEEAAYATENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243


>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 234

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++  L+ E + VY    G+  +     +  D IILDL L DI G E
Sbjct: 7   KILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLMLPDISGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   +  P+ +L+   S ++ + GL  GADDY+ KPF+ ++L+AR+ A++RR+  
Sbjct: 67  ICKRIRKISL-VPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRRTVK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G+L ++     +   G  I+LT  EY+++  ++     T T+E  +
Sbjct: 126 ESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINLTPNEYRILITMAGYPKKTFTREELI 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +       E   + +D  I  LR+K+ +      Y+ TV G GY  
Sbjct: 186 SMALGDDFEGFDRTVDTHIKNLRQKIEDDPKAPKYLVTVHGVGYRF 231


>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 223

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS 
Sbjct: 61  SVLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G ++++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ ++RKKL         I+TV G GY+L   
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLTPP 219


>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 250

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D+ +L   + + L+ E ++V +   G   +   + +  D ++LD+ +  + G  VL 
Sbjct: 28  VVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMPGLDGLAVLT 87

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR---- 120
            LR   I TP+  L+   S++D++ GL  G DDY++KPF+ EELVAR+RA++RRS     
Sbjct: 88  RLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSSITIA 147

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  GDL+++     V   G R+ LT  E++++  L       L++   L+ ++ 
Sbjct: 148 GDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELLRYLMRNPRRVLSRAQILDRVWS 207

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +++++I  LRKK+     G   I TV G GY+L+
Sbjct: 208 YDFGGRASVVEIYISYLRKKI--DVLGPPMIHTVRGVGYMLK 247


>gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15]
          Length = 226

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 134/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   LK  +F V     G++G+ +    ++D +I+D  L  + G 
Sbjct: 1   MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      PV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI ++VRR+R
Sbjct: 61  SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++   +   DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+         ++T+ G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTIRGAGYMLRETA 226


>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +E+      D ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   
Sbjct: 67  VCQELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +   I          + ++ + + V     RI LTG E+ ++ELL        ++   L
Sbjct: 126 GSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEIL 185

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 234


>gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4]
          Length = 224

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+   + V     GE+G  L     +DA+ILD+GL  + G 
Sbjct: 1   MRILVVEDDVNLNRQLVEALQEAGYVVDQAMDGEEGHYLGDTEPYDAVILDIGLPTMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRSAGRAMPVLILTARDRWSDKVSGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G + ++  +  V V G  + LT  E++++  L       +++   + H+YD
Sbjct: 121 GHASSEIACGPVRLDTKSSKVTVSGKALKLTSHEFRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGLD-----MIETVRGLGYRIKAP 219


>gi|121593642|ref|YP_985538.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605722|gb|ABM41462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 219

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   A  +   L    F V +   G DG  L     +D ++LD+ L D+ G+
Sbjct: 1   MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMGETYDLVVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++RALR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  RIVRALRDAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++L  +     G RI+LT KE+ ++ELL+ R    L + +  + ++
Sbjct: 121 APSQPDRIQVADLVLDLARRRATRAGQRINLTSKEFALLELLARRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           D   + +  +IDV I +LR K+ + A     I TV G GY
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFNPKLIHTVRGMGY 219


>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 239

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F V+    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 74  LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+    S +   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G +  + T+ G GYVLRE 
Sbjct: 194 VWRYDFGGDVNVVESYVSYLRRKI--DTGERRLLHTLRGVGYVLREP 238


>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 234

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           R+L+ ED+ ++   + + L    + V   + GED ++  +  E  FD  +LD+ +  I G
Sbjct: 3   RVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    S  + +LS  S   DK+  L SGADDYI+KPF+  EL+AR+ A+ RR 
Sbjct: 63  MQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    S I +G   +NL ++TV     +I LT  EYQ++E     +N  L +   
Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVTKNNKQIDLTQVEYQIMEYFFKNQNAALDRSSI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LNH++      + KI+DV I ++R K+ +      YI T+WG GY  
Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYKW 229


>gi|295425495|ref|ZP_06818188.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064834|gb|EFG55749.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 242

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 17/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           +IL++EDD ++A  +E+  K E +   V   G   +E+ K +  E+D I LDL L    G
Sbjct: 4   KILMVEDDTSVAEMMEMFFKKEGWQQDVAVDGVQAVEMFKEHASEYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GADDY+SKPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRQISPTVPIIMLTARGSEADQVLGLGVGADDYVSKPFSPISLIARIKALHRRV 123

Query: 120 RGHAQSL------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
                +             I T  L ++   + V   G  +  LT KE+ ++  ++ +  
Sbjct: 124 MMDEPTNNAVNKQVNNDYDIQTQHLKISKSRREVLFDGKSVTTLTPKEFDLLFTMAQKPK 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 184 QVFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKV--GPQVIQTVWGVGYKFDDS 239


>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 226

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 121/226 (53%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++     +   L+   + V V   GE+G++  +   FD I+LD+ L    G+
Sbjct: 1   MRILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR     TPV  L+   S+ D+VRGL+ GADDY+ KPF   E +AR+R ++RRS 
Sbjct: 61  HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL ++L         H I LT KE+Q++ LL+ R+   L++      ++D
Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   +DV + +LR+K+ +       I T  G GY+L +  +
Sbjct: 181 MNFSTDSNAVDVAMGRLRRKV-DEPFENKLIHTQRGLGYILEDRGQ 225


>gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 233

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +++ V     GE  +E    +  D ++LD+ L D  GF 
Sbjct: 5   KILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNLPDTTGFI 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +  ++ S  + +L+ ++   DK++G   GADDYI+KPF   EL AR+RAI++R R 
Sbjct: 65  LCQEM-QSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A S    +V GDL ++   + V +    I L+  E+ ++  L+ +      +   L  +
Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   E E +++DV I ++RKK+         I+T+ G GY+     K+
Sbjct: 184 WDYDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFDRRVKE 232


>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
          Length = 234

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  L   +   L+   F V     G   +   +    D I+LD+ L D  GFE
Sbjct: 6   RLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDGFE 65

Query: 62  VLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V+R LR    S      PV  L+   + ED++ GL++G DDY++KPFN EELV RIRAI+
Sbjct: 66  VVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 117 RRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G  A   +V G L ++ D+  V   G  + L+  E+ ++ +L       L+K   L
Sbjct: 126 RRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +  I+  +I  LR+K+         I TV G GYVLR
Sbjct: 186 ELVWQYDFGGDDSIVASYISYLRRKV--DLDEPKLIHTVRGTGYVLR 230


>gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens
           CN-32]
 gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Shewanella putrefaciens CN-32]
          Length = 226

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L+   F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR++ ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S      LS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDND-YETKLIQTVRGVGYMLE 222


>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 237

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 129/238 (54%), Gaps = 16/238 (6%)

Query: 1   MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           MR     IL+++D+ ++   +   L    + VY    G + +++      D IILD+ + 
Sbjct: 1   MRSHPPAILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G+ V +A+R A    P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R+I
Sbjct: 61  KLDGYGVCQAVRKAS-RVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSI 119

Query: 116 VRRSR--------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           +RR            +  +I  G ++V+ + + V     RI LT  E+ ++ELL+     
Sbjct: 120 LRRMETTKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGE 179

Query: 168 TLTKEMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++  FL+ ++    E   + +++D+ I  LR+KL +++G    I TV G GY L+ 
Sbjct: 180 PISRSEFLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTLKP 237


>gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 230

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A A  +   L    F V   D G DG+       +D +ILD  L  + G  
Sbjct: 4   KILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLPGMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           VL A+R A I TPV ILS + + ED+V+GL+ G+DDY++KPF   EL+AR+R ++R    
Sbjct: 64  VLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQG 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           RS    ++ +   DL ++L ++ V   G  I L  +E++++E L       +T+ M L  
Sbjct: 124 RSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLEG 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +IDV + +LRKK+         + TV G GY L
Sbjct: 184 VWDYHFDPGTNVIDVHVSRLRKKIDEGQARP-LLHTVRGSGYRL 226


>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
           TW08/27]
 gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
           whipplei TW08/27]
          Length = 227

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +   L+   + V     G   +      E D II+D+ L D+ GF 
Sbjct: 5   KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             + LR A    PV  LS   S EDK+ GL  G DDY++KPF+ +E++AR+ AI+RR++ 
Sbjct: 65  ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL ++ ++  V ++G+ I L+  E++++    L  N  L+K   L H++D
Sbjct: 125 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++ +I  +R+KL  A   +  I T  G GY++R
Sbjct: 185 YDFDGDSSIVESYISYIRRKL-AAYSSETIIHTKRGFGYIMR 225


>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
 gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
 gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
 gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
 gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
 gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
          Length = 240

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
 gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
           19977]
 gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
          Length = 249

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   LK E+F V++   G   ++L +  + D +ILD+GL  + G E
Sbjct: 17  RALVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LRV   +  V +L+   +  D + GL  GADDY++KPF+  E+VAR+RA++RR R 
Sbjct: 77  VCRQLRVFSDAY-VVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRR 135

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +S            V G L +N+D + V V    + LT  E+ ++  LS R    L++
Sbjct: 136 APESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSR 195

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  L+ ++         I+DV +  LR+KL ++     Y+ TV G GY +
Sbjct: 196 KQLLDTVWGDTWVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGYRM 245


>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
 gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 243

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +   L  E F+V   + G+    L      D I+LDL +    G  
Sbjct: 10  KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 70  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPA 129

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G    +L  + ++  G  + LT  E+ M++ L       L++E 
Sbjct: 130 QEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLSREK 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 190 LALLARGREFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVFVPDG 241


>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
          Length = 239

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEETVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 246

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/240 (27%), Positives = 122/240 (50%), Gaps = 20/240 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ ++  +I   L+ E + V     G   +   +    D ++L++ L  + G  
Sbjct: 6   RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDGLA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR +  + P+ +++G  S+ D++ GL +GADDY+ KP+  EEL+AR+RA++RR   
Sbjct: 66  VARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRRGRT 125

Query: 119 ----------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                           +R    + +   D++++   + V   G  + LT  E+ +++L  
Sbjct: 126 VPAAPPVRAPSPWQAPARPEPGARLAFADMTLDTLTRQVTRSGRALDLTKTEFALLKLFL 185

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R    L++   L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 186 SRPRQVLSRAAILRDVWGFDFEPSSNTLDVYVMYLRRK-TEAGGEPRVVHTVRGVGYVLR 244


>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +   DG+        + I+LD  +    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+  +++   PV +L+     EDKVRGL++GADDYI+KPF+ +EL AR+ A++RR 
Sbjct: 64  FIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V  +   + +   E++++           ++E  LN++
Sbjct: 124 SPTSVDEVIEVQGLKLDPVSHRVSAEERALDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIEE-TGHDRLIQTVRGAGYRF 225


>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
 gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 245

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F+V + +  +    +      D I+LDL +    G  
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY++KPFN  EL+ARI A++RR   
Sbjct: 72  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRPT 131

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q +I  G  S ++  +T++  G  + LT  E+ M++ L       L++E 
Sbjct: 132 AEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLSREK 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 192 LAQLARGREFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVFVPDG 243


>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 234

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + V+  +  ++G+++        ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCRKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A++ I    L +N D   V V    I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 229

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED++++   I++ LK  +F V   + GEDG++  + +  D  +LD+ L  I GF+
Sbjct: 3   RILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GL+ GADDYI KPFN  EL+ RI+AI+RR+  
Sbjct: 63  VCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTGD 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +Q       ++     ++L ++ +      I +T KEY +++L     N   +++  LN
Sbjct: 123 ESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELLN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + K+IDV I +LR K+ +      +IET+WG+GY  +
Sbjct: 183 LIWGYDYFGDPKLIDVNIRRLRSKIEDTPSEPEFIETIWGKGYRWK 228


>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
           HTCC2999]
          Length = 228

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +   I+++L+   F V   +  +  ++       D ++LD  L    G ++
Sbjct: 5   ILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLPGGSGVQL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R  +  + +   PV +L+     +DK+RGL +GADDYI+KPF+ +ELVARI+A++RR  
Sbjct: 65  ARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVMRRVT 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  I    L ++  +  V   G  I +   E++++           ++E  L++++
Sbjct: 125 PTAKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVYSREQLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L +       I+TV G GY  
Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALESQGYDA-MIQTVRGAGYRF 225


>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
 gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
           liui]
          Length = 241

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+G+ + +    + +ILD+ +  + G+ 
Sbjct: 7   KILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR   
Sbjct: 67  VCQEIRKES-DVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYK 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   +  ++  G L ++ + + V  +  R+ LTG E+ ++ELL  +     ++   
Sbjct: 126 ININSSIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSI 185

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++  + E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 186 LQEVWGYKPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235


>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  270 bits (692), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K L   +   LK E  +V     G++ + L +  ++D II+D+ L +  G+ 
Sbjct: 5   RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ IL+  S   DK+ G   G DDY++KPF+ +ELVAR++A+++RS  
Sbjct: 65  ICKRIRE-KSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   ++   L V+     V +QG R+ LT KEY ++ +    +N  L++E+ L+ ++ 
Sbjct: 124 QLSTETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  + +LR KL         I+TV G GY   
Sbjct: 184 YDYYGDLRTVDTHVKRLRHKLKEMGEQ---IKTVRGLGYRFE 222


>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
           clavuligerus ATCC 27064]
          Length = 342

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D ++LD+ +  + G  
Sbjct: 108 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 167

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 168 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 227

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                          ++   DL ++L  + V      + LT  E+ ++ELL       LT
Sbjct: 228 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 287

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 288 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 338


>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
 gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 241

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDGQ 238


>gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 223

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K  A  +   L  + F V V   GE+G+ L     +D IILD+ +    G+
Sbjct: 1   MRILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     TPV  L+   +I+D+V+GL+ GADDY+ KPF   EL+ARIR+I+RR  
Sbjct: 61  SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++         G R+ L+ KE+ ++ L   R    L++ +    ++D
Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  I+DV I +LR+K+ +    +  + TV G GYVL +
Sbjct: 181 VHFDSDTNIVDVAIRRLRQKI-DDPFPQKLLHTVRGVGYVLEQ 222


>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIVEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
 gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rustigianii DSM 4541]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     D  +  I        D ++LD  +    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        PV +L+     ED+V+GL+ GADDY+ KPF+ +EL+AR++AI+RR 
Sbjct: 64  VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    L ++  +  V      I +   EY+++           ++E  LN++
Sbjct: 124 SPMATEDIIEMNGLVLDPTSHRVTSNETPIDMGPTEYKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    I+TV G GY  
Sbjct: 184 WGANVYVEDRTVDVHIRRLRKALEQE-GHDKMIQTVRGTGYRF 225


>gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 227

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC
           13950]
          Length = 257

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E + V +   G + +   +    D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFERVNPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  +R + + TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  RILERVRQSDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSG 151

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    ++ GDL V+  ++ V      + L+  E++++  L       L++   L+ 
Sbjct: 152 QPPTPTAETLIVGDLRVDTASREVTRGDTAVSLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   +G +  I TV G GY+LR 
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSGREPMIHTVRGVGYMLRP 255


>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 227

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ +LA  +  +LK E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   VLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + PV +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CRRLRQVS-TVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  ++  G +S++++   V V G ++ +  KE+ ++E L       LT+   ++ +
Sbjct: 123 DGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+         + TV G GY   
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226


>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
           str. Tokyo 172]
          Length = 227

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 4   VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY L 
Sbjct: 183 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVCGLGYKLE 226


>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K ++ D IILD+ +  + G + 
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  ELVARI++ +RR +  
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I   +L +N+ +  V V G  I LT +E+ ++  L++ +   L+ +    
Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++         + V I KLR+K+        YI+TVWG GY + 
Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae]
 gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae]
 gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 226

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +   IDV + +LR K+ N  G K  I+TV G GY+L   
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDYGTK-LIQTVRGVGYILEAP 224


>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
 gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
           [Aromatoleum aromaticum EbN1]
          Length = 235

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L      V      E+  +  +    D ++LD  L  + G E 
Sbjct: 5   ILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLPGMTGIEF 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +L+     +DKV GL+SGADDYI+KPF+  EL ARI A++RR  
Sbjct: 65  ARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRRRA 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GDL ++     V      + L   E++++           ++   L+ ++
Sbjct: 125 PQTTEDAVEAGDLRLDPVTHRVGCGDRPVALGPTEFRLLHFFMTHPERVHSRAQLLDKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LR  L   +G    I+TV G GY  
Sbjct: 185 GDHVFVEDRTVDVHVRRLRAALEP-SGHDQLIQTVRGSGYRF 225


>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
 gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
           system with EnvZ [Serratia symbiotica str. Tucson]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++IV G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIVFGRFKLNLGTREMFREDQPMSLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +   +E+ L    +       G+ G+ +     +D I+LDL L  + G
Sbjct: 1   MKQILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPTMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ + +R  K +TP+ +L+  S   D+V GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 61  IEICKKIRSQK-NTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRT 119

Query: 120 RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S I+   LS+++D + V +   +I L+ KE++++ L++       T+   
Sbjct: 120 DIKPIPQKDTSSILAEGLSIDIDKRKVILNDKKIELSPKEFELLVLMASNPGRNYTRTDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           LN ++    E     ++  I +LR K+ +      +I T WG GY   E+
Sbjct: 180 LNMIWGYNFEGYEHTVNSHINRLRAKIESDMANPIFILTTWGVGYKFNED 229


>gi|304309688|ref|YP_003809286.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
 gi|301795421|emb|CBL43619.1| Putative heavy metal response regulator precursor [gamma
           proteobacterium HdN1]
          Length = 224

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+      ++  L    F       G  G        +D IILD+ L    G+
Sbjct: 1   MKILLVEDEPKTGDYLKQGLCEAGFPTDWVQDGISGSHQALHETYDLIILDVMLPGRSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R A    PV  L+    + D+VRGL++GADDY+ KPF   EL+ARIR ++RR R
Sbjct: 61  EVLQDIRSAGKDMPVLFLTARDEVNDRVRGLEAGADDYLVKPFAFAELLARIRTLLRRER 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL ++L  +       RI LT +E+ ++ LL  R+   L + +  + ++D
Sbjct: 121 SREPDVLNVADLELDLRTRRATRSHQRIELTAREFALLALLMRRRGEILPRALIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +  +++V + +LR K+ +       I TV G GY L E
Sbjct: 181 MNFESDTNVVEVAVRRLRAKI-DDPFEPRLIHTVRGMGYTLEE 222


>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
 gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
           [Pyramidobacter piscolens W5455]
          Length = 231

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A      L++  F V +   G +G+ L +  E+  ++LD+ L  I GFE
Sbjct: 3   KILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----R 117
           + R +R +K + PV +++      DK+RGL  GADDY+ KPF+  ELVAR RA +    R
Sbjct: 63  ICREVRKSK-NVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121

Query: 118 RSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            S G    A+  I    L +   ++ V V G  + L  +EY+++  L+   +   ++E  
Sbjct: 122 LSSGASSGAERPIEVKGLKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRETL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++      +   + V + ++R K+        YIETVWG GY    +
Sbjct: 182 FERIWGEDHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGYRFTAD 231


>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
 gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
          Length = 247

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L  E F V+    GE  +E+         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  +S  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIREKH-SLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 140 NQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247


>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
 gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 225

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  I   L+ E F   V   G DG+E       D I+LDL L  + G EV
Sbjct: 4   VLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + +R +  +   PV +L+      DKV G + GADDY+ KPF+  EL+ R++A++RRS 
Sbjct: 64  CKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRRSK 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  A + +  G + ++++   V V G  I+ TG E++++  L+ R     ++++ L  +
Sbjct: 124 TRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDVLLRDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I +LR KL  A    + I+TV G GY L 
Sbjct: 184 WGYNFVDDSRTVDTHITRLRTKLGEAG---DLIKTVRGFGYKLE 224


>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V+    GE+ +E       D I+LD+ L  + GF V
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 66  CRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPS 124

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + ++  G+L V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 125 ITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPR 184

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 185 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
 gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
          Length = 222

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 124/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ +   ++   K   F+V   + G  G+++ K    D +ILD+ +  + G+
Sbjct: 1   MQILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMIPCLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V +++R      P+ +L+  S  EDK+ G + G DDY++KPF+ + LVA+++A+++RS 
Sbjct: 61  TVCKSIRQ-NSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSG 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++     L +N  +  V++ G  ++L+ KEY ++       +  L+++  L+ +
Sbjct: 120 IEEKETNIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +  ++ +D  + +LR+KL   +   NYI TV G+GY   
Sbjct: 180 WGFDYDGGLRTVDTHVKRLREKLKEKS---NYIVTVRGKGYKFE 220


>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
 gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505]
          Length = 243

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 125/235 (53%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54
           RILL+ED++     +   L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 9   RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G  V   +R +  S PV +L+   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 69  PRLDGTGVCTRIRRSS-SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR      + ++V G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  L+    E + K +DV I +LR ++   A     I TV G GY L  +++
Sbjct: 188 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLDGDSE 242


>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
 gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
           regulatory protein) [Aliivibrio salmonicida LFI1238]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  + L      D I+LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  + +   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + + LI    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSVEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AEGHDRLVQTVRGAGYRF 225


>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 5   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 65  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 124

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 125 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 185 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 228


>gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 221

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   +   L+   + V + D GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATENYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL         I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221


>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
 gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus AH1271]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 233

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +DD  +A  I++ L +E + V +   G + +EL        +ILD+ + ++ G 
Sbjct: 4   IQILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+RA+R      P+ +LS  +   DK+ GL +GADDY+ KPFN  EL+AR+++++RRS 
Sbjct: 64  EVVRAVRAE-YGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSI 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I    L ++  + TV V+   I+LT  E+ ++ LL+       + E
Sbjct: 123 YLNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       + V I KLR KL +  GG   I+TVWG GY +  
Sbjct: 183 AIFEAVWKDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIEP 233


>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
 gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
          Length = 233

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   I + LK+E + V     GE+G+E+ K  +   I+LD+ +  I G  +
Sbjct: 6   ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+ +LS  +   DK+ GL +GADDY++KPFN  EL+ARI++ +RR    
Sbjct: 66  CMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKM 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I  GD+ VN+  + V +    + LT +E++++ELL   +   L       
Sbjct: 125 SGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  +       + V I K+R+K+        YI+TVWG GY + ++
Sbjct: 185 RVWKEQAFQSDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232


>gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  ++      G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
           PR4]
 gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 131/230 (56%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +  S+E  L+   F V     G D + +      DA++LD+ +  + G  
Sbjct: 6   KILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR A    P+C+LS  +S++D++ GL+SGADDY+ KPF   ELVARIRA++RRS  
Sbjct: 66  VVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNT 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         +  G+L ++L  + V V G  + LT +E++++E+L+      LT+E  L
Sbjct: 126 PAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +  ++DVFI  LR+K   + G    + TV G G+VLREN 
Sbjct: 186 ELVWGYDFVADTNVVDVFIGYLRRKFE-SGGSPRLLHTVRGVGFVLRENP 234


>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
 gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 241

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDGQ 238


>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 248

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S P   L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 241


>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
 gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
          Length = 243

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 10  KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 70  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 129

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 130 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 190 MNMARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 241


>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K ++ D IILD+ +  + G + 
Sbjct: 6   ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  ELVARI++ +RR +  
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQL 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I   +L +N+ +  V V G  I LT +E+ ++  L++ +   L+ +    
Sbjct: 125 NNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++         + V I KLR+K+        YI+TVWG GY + 
Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica
           Y11]
 gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  ++      G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
 gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
           [Cronobacter turicensis z3032]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++   ++   PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
           J1-208]
          Length = 228

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
             +     + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 STSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
 gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
          Length = 244

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 11  KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 71  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 130

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 131 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 191 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 241


>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 114/220 (51%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +   ++   + E ++V   + G+ G++L    +   I+LDL L  + G+E+
Sbjct: 7   ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K+  P+ +L+      D V GL+ GADDY++KPF+ +EL+AR+ A +RR R  
Sbjct: 67  CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             ++   GD   +  A+T+   G  + L+ KE+ ++  L       L+++  ++ ++   
Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID F+  LR K+         ++TV   GY   
Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226


>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
 gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
 gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
           CMCP6]
 gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
           MO6-24/O]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|228957490|ref|ZP_04119243.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229108678|ref|ZP_04238289.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126530|ref|ZP_04255544.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143826|ref|ZP_04272245.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228639587|gb|EEK95998.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228656919|gb|EEL12743.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228674819|gb|EEL30052.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228802180|gb|EEM49044.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 236

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 68  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 127 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234


>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 245

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E  +   +D I LD+ +  + GF+
Sbjct: 20  RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K   P+ I++     +D V+G + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 80  ACERIRA-KSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  G+L ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E  ++DV + +LR+K+         I TV G GY L 
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
 gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
           psychrerythraea 34H]
          Length = 233

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I  +L    FN       E  +        D I+LD  L    G  
Sbjct: 4   KILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLPGGTGVS 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  + +   P+ +L+  S  +DKV+G ++G DD+++KPF+ +EL+ARI+A++RR 
Sbjct: 64  LAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  +    L ++  A  V + G+ + L   E++++           ++E  L+++
Sbjct: 124 SPTSLEEEVDFHGLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +S   G +++++TV G GY  
Sbjct: 184 WGTNIYVEDRTVDVHIRRLRKAIS-GEGHEDFVQTVRGAGYRF 225


>gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   ++  L+   F V     GE      +  ++  I+LDLGL    G 
Sbjct: 1   MRILLVEDDEQIGSGVQRGLRHSGFAVDWVRDGETASTALRSTQYGLILLDLGLPKQDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR     TPV I++   +I D+V GL +GADDY+ KPF  EEL+ARIR + RR  
Sbjct: 61  TVLARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q++  +G L ++     V +    + +T +E+ ++E L  R N  +T+E     LY 
Sbjct: 121 GSVQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LR+KL         I TV G GY + E  
Sbjct: 181 WNEEVESNTVQVHIHHLRQKLGTD-----VIVTVRGIGYRIGEPG 220


>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
 gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
           tuberculosis SUMu012]
          Length = 240

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 15  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 75  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 195 VWRYDFGGDVNVVESYVLYLRRKI--DTGEKRLLHTLRGVGYVLREP 239


>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 248

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V+    GE+ +E       D I+LD+ L  + GF V
Sbjct: 6   ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKMDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 66  CRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPS 124

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + ++  G+L V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 125 ITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPR 184

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 185 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|293376013|ref|ZP_06622270.1| putative transcriptional regulatory protein CutR [Turicibacter
           sanguinis PC909]
 gi|325841065|ref|ZP_08167248.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
 gi|292645369|gb|EFF63422.1| putative transcriptional regulatory protein CutR [Turicibacter
           sanguinis PC909]
 gi|325490082|gb|EGC92426.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
          Length = 224

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 131/221 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+K +  +++  L+ E + V VT  GE+ +EL  F  ++ ++LD+ L  I GF
Sbjct: 1   MRLLIIEDEKDILLALQKGLQKEGYAVDVTGDGEEALELLNFNTYNLVVLDINLPSIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR   ++T V I+S    IEDK+RGL  GA+DY+ KPF+  EL ARIRA++RR  
Sbjct: 61  SILEILREKDMTTRVIIVSANREIEDKIRGLDLGANDYLVKPFDFSELKARIRALLRREF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+L ++L    V      ++LT KEY +++ L   K   ++ E  + H++D
Sbjct: 121 TSVPTIIKEGELCLDLATHKVTFNDQILNLTLKEYSILKYLIQNKGRIVSSEELIQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +I V I  LRKKL   +G  N I+T+ G GY+ 
Sbjct: 181 ENADPFTTVIRVHIYSLRKKLITISGKDNIIQTIKGVGYLF 221


>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 235

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  ++  +++ LK + F+V   D G+D + L   Y+ DA ILD+ +  + GF 
Sbjct: 10  KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 129

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SLI   D++++ D   V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 130 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     +  +++ ++  LR+K+       + I+TV G GYVLR+ 
Sbjct: 190 WNYDFGGDGNVVESYVSYLRRKI--DKEEPHLIQTVRGVGYVLRKP 233


>gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 235

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I+  L  E +++     G + +E  +   +  +I+D+ +  + G E
Sbjct: 5   KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            +R +R  K   P+ ILS      DK+ GL  GADDYI KPF+  EL+AR++  +RR+  
Sbjct: 65  SMRRIRE-KSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   GD+  +++   V  +G  + LT KE ++++L     N   TK   
Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKEGKELTLTAKEMKILKLFFENPNRVFTKVQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V + +LR K+ +       IETVWG GY L
Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230


>gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 231

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ ED+K +   I L +K EN NV+    G++ +++ +  + D I++D+ +  I G 
Sbjct: 1   MNILIAEDEKDIRDLISLHMKKENHNVFEASDGKEALDIFECEKIDLILVDIMMPKINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R +  + P+  ++ M S  DKV  L  GADDY+ KP +  EL AR+ + +RR  
Sbjct: 61  AVIQKVRESS-TIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCY 119

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + ++      TGDL +  D   V     +I L  KE+++++LL        TK+     
Sbjct: 120 RYTENREDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +   I V +  +R+K+ +      YI+T+ G GY +     +E
Sbjct: 180 VWGEIYIGDSNNIMVHLSHIREKIEDDPKNPVYIKTIRGIGYKIERYKPNE 230


>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 235

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 105/226 (46%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D+K +   I  +L  E  + V       DG+      + D +ILD+ L D  G+
Sbjct: 7   KVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIMLPDGEGY 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RRS 
Sbjct: 67  DICKQIRDVS-HVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  G   +N     +   G  I LT KE  ++       N  ++KE    
Sbjct: 126 YLQPSQEEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          + V I +LR+K+ ++     ++ TV G GY   
Sbjct: 186 TVWGEDFFGSDNTVMVHIRRLREKIEHSPSTPEFLVTVKGLGYKFV 231


>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 222

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  +A  ++  L+ E F V +   G+ G+++    E+D +I+D  +  + G 
Sbjct: 1   MRLLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPALSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    + P+  L+   ++ED V GL +GA+DYI KPF  EEL+ARIR  + R+ 
Sbjct: 61  EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQL-RTT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G LS+N     V      + LT KE+ ++E L   K+   T+   + H++D
Sbjct: 120 NRVEESLSVGSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +IDV+I  LR+KL +A  G N I+T+ G GY++RE+
Sbjct: 180 IHFDSDTSVIDVYITFLRRKLESAGCG-NIIQTIRGVGYIVRES 222


>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
 gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
           thermophilum IAM 14863]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I L L +E   V     G   +   +    D ++LD+ +  + G++ 
Sbjct: 9   VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + PV +L+    + D+V+GL+ GADDYI+KPF+  EL AR++A++RRS G 
Sbjct: 68  LQRIREES-AVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   I  G L++    +T    G  + LT KE+ ++ LL+       ++E  L+ ++ 
Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + + +D  I  LR KL   AG    I TVWG GY   E
Sbjct: 187 PDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226


>gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 236

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 68  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 127 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234


>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
 gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
           HGF5]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F V  T+ G + + L +   + D  +LD+ +  I GF
Sbjct: 3   KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+AR+++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVN 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G A+    +G  +++L +K  +  G  + LT  E+ +++    ++NT L++++ L+
Sbjct: 123 VQRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++      + KI+DV I +LR+K+        Y++TVWG GY  +   +
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYKWKGQGQ 232


>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 340

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D ++LD+ +  + G  
Sbjct: 106 RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 165

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 166 AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 225

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                          ++   DL ++L  + V      + LT  E+ ++ELL       LT
Sbjct: 226 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 285

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 286 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 336


>gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes
           HCC23]
 gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes
           HCC23]
 gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 228

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                 + + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium
           diphtheriae]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F       G   ++  +    D ++LDL L  + G +
Sbjct: 11  KILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLPGMNGID 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  +   D V GL+SGADDYI+KPF  +EL+AR+RA +RR+  
Sbjct: 71  ICRIIRQES-AVPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELIARLRARLRRTED 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GDL++++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 130 SPSETIEIGDLTIDVLGHEVTRGDEEIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+       + + TV G GY 
Sbjct: 190 RNASDTRLVNVHVQRLRSKIEKDPENPHIVLTVRGVGYK 228


>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
           persistence regulator A
 gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL ++DD+A+  S+   L    ++V + + G + +E+      DA++LD+ +  + G 
Sbjct: 1   MRILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+ARIRA++RR++
Sbjct: 61  EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DL+++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGFDFPTSGNALEVYVGYLRRKTEAD-GESRLIHTVRGVGYVLRETPP 228


>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
 gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 233

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 12/234 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L+++D+K +A  IEL LK+EN+ V+    G   +E  K  + D  ILD+ L DI
Sbjct: 1   MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFE+L+ +R    + PV +L+  ++  DK+ GL  GADDYI KPF   EL+AR++A +R
Sbjct: 61  DGFEILKEIRKDH-NFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLR 119

Query: 118 R-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       S   ++  +    L +N +          + LT  E+ ++ +L+  K   ++
Sbjct: 120 RFIRYNDGSGQSSEDTLEIAGLVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVIS 179

Query: 171 KEMFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++  +        + V I  LR+KL    G K  I+TVWG GY + E
Sbjct: 180 SENLFEQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233


>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
           [Dechloromonas aromatica RCB]
 gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dechloromonas aromatica RCB]
          Length = 225

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++     +   L    F V +   G DG+ L     +D  +LD+ L  I G+
Sbjct: 1   MKILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL+ +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L+   DL ++L  + V   G +I LT KE+ ++E+L  R+   L + +  + ++
Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +I+V I +LR K+ +       I TV G GYVL 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKV-DDGFEPKLIRTVRGMGYVLE 222


>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 243

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  +   L  E F V   D G  G E      +D I+LDL L  + G +
Sbjct: 4   RLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   ++TP+ IL+  +   + V+GL+SGADDYI+KPF   EL+AR+ A++RR+ G
Sbjct: 64  ILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSG 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +         S I  G+L +  +   V + G  I L  KE++++  LS +    LT++
Sbjct: 124 GDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +N ++        + +DV +  LRKKL        +I+++ G GY L  N K
Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPDS-VHIDSIRGVGYKLVVNKK 236


>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 233

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ +   +   L+   F V V   G +G+     +E D ++LD+ +  I G E
Sbjct: 7   RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +   E+++ GLQ GADDY++KPF+ +EL  R+ +++RR+R 
Sbjct: 67  VCKRLRQVS-QVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARM 125

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +V GDL + + A+T  + G  + LT +E+ ++           ++   L  
Sbjct: 126 PRPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   + V + +LR+K+         + TVWG GY 
Sbjct: 186 VWSWDF-GDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGYR 227


>gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 236

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 68  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 127 QAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234


>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
 gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
 gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [marine gamma
           proteobacterium HTCC2143]
          Length = 228

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           MRILLIEDD ++A  I   L+   ++V     GE G+ L  K  E+D +++D  L ++ G
Sbjct: 1   MRILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +++ LR A   +PV ILS +  ++D+V+GL++G DDY+ KPF   EL+ARI A++RR 
Sbjct: 61  LTIIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQ 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +++ +   DL ++L A  V   G   +L  +EY+++E L       +T+ M L ++
Sbjct: 121 KSSTSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   +P+  +IDV I +LR+K+         + TV G GY+LR+ 
Sbjct: 181 WEYHFDPQTNVIDVHISRLRQKIDKDFDQ-QLLSTVRGAGYMLRDP 225


>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 246

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+V +   G D +   +  + D +ILDL L  I G E
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 73  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRT 131

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                              G L++++  + V +    + LT  E+ ++  LS R     +
Sbjct: 132 VATPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFS 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   L  ++         ++DV I  LR+KL++      Y+ TV G GY +
Sbjct: 192 RRQLLEAVWGDSWGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGYRM 242


>gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   L+++ + V     G   I       +D ++LDLGL    G 
Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K   PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA+VRR  
Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALVRRQA 234

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+++I    L+++  A+ V ++G  + L+ +EY ++E L  R    L+K      +Y 
Sbjct: 235 GRAETVIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVLSKSQLEEKIYG 294

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     G   I TV G GY++
Sbjct: 295 WGEEIGSNTVEVYIHSLRKKL-----GAELIRTVRGLGYMM 330


>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 272

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL      D ++LD+ +  + G+ V
Sbjct: 35  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYGV 94

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 95  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 153

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 154 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 213

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 214 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 261


>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
 gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
          Length = 227

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +    ++ L+ E F V   + GE G+EL   Y    +ILD+ L  I GFE
Sbjct: 3   KILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + LR       + +L+  +   D++ GL+SG DDY+SKPFN  EL+ RI++++RR  S
Sbjct: 63  VCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLDS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  LI      ++L +K+    G  I LT  E  +I +         ++   LN  +
Sbjct: 123 IQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMTW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E ++KI+DV I +LR K+ + +    YIETVWG GY    N
Sbjct: 183 GEEFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227


>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 234

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L++  + V  ++ G++G++     + D +ILDL L D+ G E+
Sbjct: 5   VLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVDGLEI 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ +L+  S   DKV GL+ GADDYI+KPF+  EL+ARI+A++RR++
Sbjct: 65  CKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQ 124

Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +        GD+ ++     V  +G  + LT KE+++++LLS      LT++  L+ 
Sbjct: 125 QPEEEKEEIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      E + +DV I  LRKK+ +      YIETV G GY L +  +
Sbjct: 185 VWGYEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLNDKGE 233


>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
 gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Achromobacter xylosoxidans A8]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      +    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G   ++ETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225


>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 230

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  + + + +  ++  F V   + G   +++      D ++LDL L    G EV
Sbjct: 6   VLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+      D++ GL+ GADDY+ KPF+  EL+ R +A++RR +
Sbjct: 66  CRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRGK 125

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +      +G L V+     V V G    LT  E++++  L   +    T++  LN +
Sbjct: 126 PQPEEETLWESGGLRVDFGTYKVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E   + +D  + +LR K+   A     +ETV G GY L
Sbjct: 186 WGYEFEGYARTVDTHVRRLRHKIEPYAA---IVETVRGVGYRL 225


>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +E+ L +E + V     G + +++    E D +ILD+ +  + G EV
Sbjct: 6   VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R +K + P+ +LS  S   DK+ GL +GADDY+ KPFN  ELVAR+++ +RR +  
Sbjct: 66  CMRMRKSK-NMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYKRL 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q +I   DL +N     V+V    + LT +E++++ELLS  +    + E    
Sbjct: 125 NVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++          + V I K+R+K+        +I+T+WG GY + +
Sbjct: 185 SVWKQDFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGYKVEK 231


>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 235

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   + L L+ +N  +Y    G D   + +    D  I+D+ +  I G+ 
Sbjct: 3   KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMPKIDGYH 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++ +R  K   PV +LS  S    K+ GL+ GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 63  LVKKIRE-KYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  +  G+L +N    T+   G  I LT  EY++I  L        TK+
Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++D     +  +I V I  LR K+ N +    YI+T+ G GY  
Sbjct: 182 QIFEYVWDEPFYGDDNVIMVHISNLRDKIENDSKNPEYIKTIRGLGYKF 230


>gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51]
 gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 232

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L +D++++   +E ++  + ++      G + + + +    D +ILD+ +  + GF
Sbjct: 1   MKIMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAENPDLVILDVMMPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ ILS    I DK  G ++GADDY+ KPF+  EL  RI A++RR  
Sbjct: 61  DVCTQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALLRRRE 120

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  I  GDL +        ++G R+ LT KE++++  ++       T+E 
Sbjct: 121 HQTGGAGEAEKESIKLGDLEILFKRYEARLKGKRVELTPKEFKILAYMAGHPGEVFTREQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L +++      E+  I VFI K+R+K+        Y++TVWG GY   E
Sbjct: 181 LLTYVWGEDYVGELTGIAVFIRKIREKIEEDPSKPKYLQTVWGVGYKFGE 230


>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 248

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G E
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS  
Sbjct: 78  VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ +
Sbjct: 138 SEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA-KDETC 230
           ++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A  DE  
Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAAGADERA 248


>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
 gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
           atmophyticus]
          Length = 241

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+  +   I+  L    +NV   + GE+ I++    +   ++LD+ +  + G+ 
Sbjct: 9   KIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDGYS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDYI KPF+ +EL ARIR++ RRS  
Sbjct: 69  VCQQLRRES-DVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S+I  G L ++   K V     R+ LTG E+ ++ELL  R   ++++  
Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187

Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  +++       + +++DV I +LR KL       + I TV G GY+ ++
Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGYLFQK 239


>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
           568]
 gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
 gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
 gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
 gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
 gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
 gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
           Cd(II), Zn(II), Co(II) resistance [Cupriavidus
           metallidurans CH34]
          Length = 225

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    F V + + G DG+ + +  ++D IILD+ L  + G+
Sbjct: 1   MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++++R +K  TPV  L+ +  + D+VRG + GADDY+ KPF   EL+ARIR  +R+S 
Sbjct: 61  TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V     RI LT +E+ ++ LL  R+   L++    + ++ 
Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV I +LR K+ +    +  I TV G GYVL   
Sbjct: 180 VNFDTDTNVVDVAIRRLRSKV-DDPFDQKLIHTVRGMGYVLDPE 222


>gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 229

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD      I+  L  + + V V   G+D +      ++  IILD  L  + G 
Sbjct: 1   MRILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A+ + PV ILS + S++++V+GL+ G DDY+ KPF   EL+AR+  ++RR  
Sbjct: 61  TVLNTLRSAQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A    +L+   DL ++L  + V   G  I L  KE+Q++  L       +T+ +    
Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D   +P+  +IDV + +LRKK+         +ET+ G GY L E A
Sbjct: 181 VWDYDFDPQTNVIDVHVARLRKKVETD-DLPPILETIRGVGYRLVEKA 227


>gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 238

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+LL++D++A+ H +  +L+ E F N+         +E C+ Y +D I+LD+ L D  GF
Sbjct: 5   RLLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVMLPDRSGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R      P+  L+  S+  DK+ G   GADDYI+KPFN  E+ ARI+A +RR +
Sbjct: 65  DICPLIRET-TDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G      Q++   G + +N  A  V V G RI L  + YQ++  LS   N   +K     
Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           H++      E   + V I KLR+K+ +      +I TV G GY      
Sbjct: 184 HVWGEEGFGEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGYKFVPEG 232


>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 227

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED++++   +++ L+ E + ++    GE+GIE+ +    D ++LD+ L  I GFE
Sbjct: 4   KVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR    S  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI++I RR   
Sbjct: 64  VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +LI      ++  ++        + LT  EYQ+I++        +T+   L  +
Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+       +YIETVWG GY  +
Sbjct: 184 WGDDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGYRWK 227


>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
 gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
 gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
          Length = 239

 Score =  270 bits (691), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGDFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA3]
 gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL096PA2]
 gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL097PA1]
 gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
           HL099PA1]
 gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
          Length = 232

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L+   + V     G + +        DA+I+D+ +  + G 
Sbjct: 3   MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      P+ +L+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ RRSR
Sbjct: 63  EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL+++   + +     RI LT  E+ ++ +        L +   L
Sbjct: 123 PEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERWWLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++          ++V+I  LR+K  +  G    I TV G GYVLRE
Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEPRLIHTVRGVGYVLRE 229


>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ LKSE +N      G + I++ +  + D +ILD+ + ++ G E 
Sbjct: 6   ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K   P+ +LS  S   DK+ GL  GADDY+SKPFN  ELVAR+++ +RR    
Sbjct: 66  CLKIREMK-EMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYKF 124

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +++I   DL++NLD   V++    + LT  E+ ++ LLS  +    + E
Sbjct: 125 KNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSIE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++         + V I K+R+K+ +      +I+TVWG GY + +
Sbjct: 185 NIYESVWNQEFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGYKIEK 235


>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E     +FD + LD+ +  + GF+
Sbjct: 22  RILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDGFD 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K   P+ I++     +D V+G + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 82  ACERIRA-KSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDM 140

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  L+  GDL ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 141 QKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFRE 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E  ++DV + +LR+K+         I TV G GY L 
Sbjct: 201 VWGYEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKLE 245


>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L +D++++   +E ++  + ++      G + + + +    D +ILD+ +  + GF
Sbjct: 1   MKIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ ILS    I DK  G ++GADDY+ KPF+  EL  RI A++RR  
Sbjct: 61  DVCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A     +  I  GDL +        ++G R+ LT KE++++  ++       T++  L
Sbjct: 121 HQAGETEERESIKLGDLEIFFKRYEARLKGKRVELTPKEFKILAYMASHPGKVYTRKQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      E+  I VFICK+R+K+        Y++TVWG GY   E
Sbjct: 181 TYVWGEDYVGELTGIAVFICKIREKIEEDPSKPKYLQTVWGVGYKFGE 228


>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 237

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  L+  +   L  E +   V   G +G +      +D IILD+ L  + GFE
Sbjct: 4   KILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR     TPV IL+  ++ E+ V+GL+ GADDYI+KPF   EL++R+ A++RR+  
Sbjct: 64  VLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRTGN 123

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +I  GDL +  +   V +    I L  KE++++  L  R    +T++
Sbjct: 124 KEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +N ++        + +DV +  LRKKL         IE++ G GY L 
Sbjct: 184 DLMNVVWGFDYIGGQRTVDVHVSSLRKKLEMNQQSVQ-IESIRGVGYKLV 232


>gi|30019274|ref|NP_830905.1| two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|229078408|ref|ZP_04210970.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296501821|ref|YP_003663521.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
 gi|29894817|gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579]
 gi|228704901|gb|EEL57325.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|296322873|gb|ADH05801.1| two-component response regulator yvrH [Bacillus thuringiensis
           BMB171]
          Length = 234

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 241

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 17/239 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDDK+++  +EL  K E +       GE+ +E+ + +  +FD I LDL L    
Sbjct: 1   MKILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +++   S  D+V GL  GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRR 120

Query: 119 SRGHAQSL------------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRK 165
                Q              + T  + ++   + V    +R+  LT KE+ ++  ++ + 
Sbjct: 121 VMLEGQPRDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++E  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 181 KQVFSREQLLELVWGYEYFGEERTVDAHIKKLRQKLEK--SGPQIIQTVWGVGYKFDDS 237


>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
           9905]
          Length = 239

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A       +   F   +   GE+G        +D IILDL L    G E
Sbjct: 3   RILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNLPGADGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R++R   +  P+ I+S      DK+RG   GADD+++KPF+  EL+AR +A + R   
Sbjct: 63  VCRSIRAQ-LDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R      I   +L+++  A+ V V G+ + LT +E+ ++  ++   N   +K     
Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+      ++  + V I ++R+K+        +IETVWG GY  
Sbjct: 182 RLWGFDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGYRF 226


>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
           'morsitans']
 gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
 gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
           'morsitans']
 gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
          Length = 239

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
 gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
 gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
 gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
 gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
 gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
 gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
 gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
 gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. W3110]
 gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
 gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
 gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
 gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
 gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
 gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
 gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
 gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
 gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
 gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
 gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           EC4024]
 gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
 gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
 gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
 gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
 gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
 gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
 gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
 gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
 gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
 gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
 gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
 gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           FRIK966]
 gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
 gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
 gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
 gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
 gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
 gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
 gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
 gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
 gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
 gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
 gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
 gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
           and ompF: outer membrane protein synthesis [Escherichia
           coli O157:H7 str. EDL933]
 gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
 gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
 gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
 gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. MG1655]
 gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
 gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
 gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
 gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
 gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
 gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
           [Shigella dysenteriae Sd197]
 gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
 gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K12 substr. W3110]
 gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
 gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
 gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
 gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
 gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
 gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
 gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
 gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli str. K-12 substr. DH10B]
 gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
 gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
           3083-94]
 gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4196]
 gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4113]
 gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
           Et1/99]
 gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
 gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4401]
 gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4501]
 gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC869]
 gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC508]
 gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
 gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
 gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
 gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
 gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
 gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
 gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
 gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
 gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4206]
 gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4045]
 gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4042]
 gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. EC4115]
 gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
 gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
 gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
 gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
 gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
 gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
 gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
           str. TW14588]
 gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli 55989]
 gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia fergusonii ATCC 35469]
 gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI1]
 gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli S88]
 gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli IAI39]
 gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli ED1a]
 gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli UMN026]
 gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
 gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
 gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
 gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
 gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli BW2952]
 gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli O157:H7 str. TW14359]
 gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O26:H11 str. 11368]
 gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O103:H2 str. 12009]
 gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
           system with EnvZ [Escherichia coli O111:H- str. 11128]
 gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
 gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
 gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
           12163]
 gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
 gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Klebsiella sp. 1_1_55]
 gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
           CB9615]
 gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
           29220]
 gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
 gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
 gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
 gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
 gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
 gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
 gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
 gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
 gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
 gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
 gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
 gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
 gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
 gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
 gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
 gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
 gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
 gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
 gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
 gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
 gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
 gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
 gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
 gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
 gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
 gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
 gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
           83972]
 gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
 gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
 gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
 gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
 gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
 gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
           BAA-2158]
 gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
 gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
           2457T]
 gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Escherichia coli W]
 gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
 gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
 gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
 gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
 gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
 gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
 gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
           CDC 74-1112]
 gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
           796-83]
 gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. EC1212]
 gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
           WV_060327]
 gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
           EC4100B]
 gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
 gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
           493-89]
 gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
           2687]
 gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
           LSU-61]
 gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
 gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
 gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
 gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
 gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
 gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
 gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
 gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
 gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
 gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
 gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1044]
 gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
           O157:H7 str. 1125]
 gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
 gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
 gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
 gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
           AA86]
 gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
 gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
 gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
 gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
 gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
 gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
 gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
 gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
 gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
 gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
           155-74]
 gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
 gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
 gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
 gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
 gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
 gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
 gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
 gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
 gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
 gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
 gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
 gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
 gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
          Length = 239

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
 gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
           [Planococcus donghaensis MPA1U2]
          Length = 231

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD  +   + L L  + + V   + G   + L +  + D I+LD+ +  + G EV
Sbjct: 6   IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R+ K + P+  +S    +  K++GL++G DDYI+KPF+  EL ARIRAI+RR+   
Sbjct: 66  CRRIRL-KTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWR 124

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++   DL +++DA+ + ++G ++ L  KE+Q++ LL+   N   T E   + 
Sbjct: 125 NNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E +V+ + V I KLRKK+        +I+TV G GY  
Sbjct: 185 VWGYYSEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGYKF 228


>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D +E    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR   ++ PV +L+   ++ D+V GL +GADDY+ KPF  +EL+ARIRA++RRS  
Sbjct: 72  AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSY 131

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DL +NL  + V   G R+ LT  E+ ++E+        LT+E
Sbjct: 132 AAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 192 QILKAVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRLVHTVRGVGYVLR 240


>gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
 gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342]
 gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55]
          Length = 227

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 226

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   +DV I +LR K+ +       I TV G GY L+  A
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFENKLIMTVRGMGYRLQAEA 222


>gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 234

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
           succinogenes 130Z]
 gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
           [Actinobacillus succinogenes 130Z]
          Length = 226

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 130/231 (56%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  + + + + L    F+V     G+ G+E  K   +DA++LDL L  + G 
Sbjct: 1   MRVLLIEDDPLIGNGLNIGLTKSGFSVDWFTDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  DILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I    +  + +   V ++   + LT +EY+++EL  L K   LT+      LY+
Sbjct: 121 GQANPIIEHSLVKFDPNNHRVTLRDKEVALTTREYKLLELFMLNKERVLTRAFIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             ++     ++V +  LRKKL     GK +I TV G GY L +N  DET E
Sbjct: 181 WDEDISSNALEVHMYNLRKKL-----GKQFIRTVHGVGYALGKN--DETPE 224


>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
 gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Actinomyces sp. oral taxon 170 str. F0386]
          Length = 249

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF 
Sbjct: 16  HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+  
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H+
Sbjct: 136 IENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227
           ++     +  I++ +I  LR+K   +  A G      I+T  G GY+LRE   +
Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249


>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 223

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+ L   ++  L+   F V  T  G++ +E  K   +D IILDL L    G 
Sbjct: 1   MVVLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGL 60

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++ + +R   I    PV +L+ +S  + KV+G   GADDY++KPF+ +EL+ARI A++RR
Sbjct: 61  DICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    ++++    +  +  +K+V V G+ I+LT  E+Q++E          ++E  L  +
Sbjct: 121 AGYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +        + +DV+I +LRKKL +      Y++T+   GY L + 
Sbjct: 181 WGHDHNETTRTVDVYISRLRKKLGDKG---KYLKTLPRLGYKLTKE 223


>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
 gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
           [Erwinia billingiae Eb661]
          Length = 224

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D+      +   L    + V V   G +G+ + + Y +D I+LD+ + ++ G+
Sbjct: 1   MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ L     + PV  L+  S++ED+++GL+ GADDY+ KPF+  EL+ARIR  +RR  
Sbjct: 61  EVMKTL--DAQNIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGA 118

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  GDL ++   + VE  G RI LT KE+ +++L  L     +++ +  + ++
Sbjct: 119 NVKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           D   + +  ++DV + +LR+K+         I TV G GY 
Sbjct: 179 DMNFDSDTNVVDVAVRRLRQKVDEPFATP-LIHTVHGVGYR 218


>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
 gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
           13479]
          Length = 233

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  + F+V     GE+ ++L  +  +   IILD+ +  + G+
Sbjct: 13  KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R +R      P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 73  ETCRTIR-KYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSN 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  LI  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 132 AVSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVWN 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+       +YI T+WG GY   
Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEKG---DYIRTIWGMGYKFE 230


>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
           17244]
          Length = 232

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/233 (36%), Positives = 137/233 (58%), Gaps = 7/233 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+  +A  ++L L  E +N+ V   G DG+      ++D IILDL L ++ G
Sbjct: 1   MKEILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R LR  KI+TP+ +L+  S + DKV GL  GADDY++KPF  EEL+ARIR I+ R 
Sbjct: 61  IEICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQ 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G ++++ +  T   +   I LT KE++++E L + KN  LT+E  
Sbjct: 121 VVISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++++    E E  + DV+I  LR K+       +YI TV G GY  +++ ++
Sbjct: 181 VSNVWGYDYESETNVTDVYIRYLRSKIDQK-YDTHYIRTVRGIGYQFKDDEEE 232


>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
 gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
           jeikeium K411]
          Length = 233

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  ++  +++ LK + F+V   D G+D + L   Y+ DA ILD+ +  + GF 
Sbjct: 8   KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR A    P   L+    +ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 127

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SLI   D++++ D   V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 128 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     +  +++ ++  LR+K+       + I+TV G GYVLR+ 
Sbjct: 188 WNYDFGGDGNVVESYVSYLRRKI--DKEEPHLIQTVRGVGYVLRKP 231


>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
 gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
 gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
           43380]
 gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
           43969]
 gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
           ATCC 33641]
 gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
           29909]
 gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
 gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
           W22703]
          Length = 239

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A  IEL L++E +   V   G  G+   +    + +++DL L  + G EV
Sbjct: 9   ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ IL+    +EDKV GL +GADDY+ KPF+ EEL+ARIRA +RR    
Sbjct: 69  ARRIRKTS-NVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVTPA 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   DL +NL+ + V   G RI  + KE++++ELL+       ++      ++ G 
Sbjct: 128 ITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVWPG- 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    ++DV+I  LRKKL   AG +  I TV G GYVLRE+
Sbjct: 187 YQGGSNVVDVYIGYLRKKLE-GAGERRLIHTVRGVGYVLRED 227


>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
 gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
           pseudotuberculosis IP 31758]
 gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
           33638]
 gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
           29473]
 gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 253

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D++ LA  +   L+ E+F V V   G D + L +  + D ++LDLGL  + G E
Sbjct: 19  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  S+  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRELRTFSDAY-VVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 137

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                      G      V G L +++  + V +    + LT  E+ ++ +LS R     
Sbjct: 138 APVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 197

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +  ++         ++DV +  LR+KL +      Y+ TV G GY +
Sbjct: 198 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 249


>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L+  +   L+   + V +   GEDG  L     +DA++LDLGL ++ G 
Sbjct: 1   MRVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ ++RKKL         I T+ G GY L + 
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGQD-----VITTIRGLGYALNDP 219


>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 4   ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I +G  S+N+  + +   G  + LT  EY ++  L  +    ++++  LN ++ 
Sbjct: 124 DEKADMITSGPFSLNVIEERLYKNGQLVDLTPTEYMILHYLMNQAAKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+KL         I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKLECNPSEPEXILTVWGKGYVWKES 227


>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 240

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLIT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407]
 gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 234

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 235

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 129/233 (55%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M++LL+ED+K++   + + LK E + V     GE+ ++L     +    ILD+ L  I G
Sbjct: 1   MKVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FEV   LR       + +L+  S   DKV GL+ GADDY+SKPF+  EL+AR++A+ RR 
Sbjct: 61  FEVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRRL 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ I      + LD + +      I LT KE+ +I+LL+   N  ++++  L
Sbjct: 121 TPIPEAEDKNEINIAPFRLLLDERKLIRTEQEIDLTPKEFAIIKLLAENANKAISRDEIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++      ++KI+DV I ++R+K+ +      ++ETVWG GY+ R++  DE
Sbjct: 181 TAVWGQFFVGDLKIVDVNIRRIRQKIEDDPAHPAFLETVWGYGYLWRKDVPDE 233


>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           MSMB43]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  E+D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDAAIRRLRAKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
 gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
 gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
 gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
 gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
 gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
 gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
 gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
 gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
 gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
           32953]
 gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
 gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
 gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
 gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
 gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
 gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
 gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Nepal516]
 gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis Pestoides A]
 gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
 gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
 gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
 gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
 gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+   +  ++  L+   F+V +   G +G+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MHILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+VRGL+ G DDY+ KPF   E +AR+R + RR  
Sbjct: 61  AVLKVLRATH-ATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL  R+   L++    ++++D
Sbjct: 120 PRESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR K+ + A     I+TV G GYV+     D
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIQTVRGVGYVIEAKDPD 225


>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
           Antiqua]
 gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis FV-1]
 gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
 gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulates Pi uptake (OmpR family) [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Nepal516]
 gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Antiqua]
 gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CO92]
 gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis CA88-4125]
 gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Nepal516]
 gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Yersinia pestis Pestoides A]
 gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 225


>gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   L+  +F V     G++G+ +    E+D +I+D  L  + G 
Sbjct: 1   MKALVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R     TPV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI +++RR+R
Sbjct: 61  SIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++   +   DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QAAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+         ++TV G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTVRGAGYMLRETA 226


>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED+  +A  +E  L  E ++V V   G       +   FD I+LD+ L    G 
Sbjct: 2   IRILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A + TP+ +L+  +   +KV GL+ GADDY++KPF  +EL ARI+A++RR+ 
Sbjct: 62  EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G         GD+ V+     + ++G  + LT  E++++++    +   L+++  +   +
Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +I+D  I  LR+K+ +      Y+  V G GY  
Sbjct: 182 GRDTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRF 223


>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E   + E ++V  T  G++ + L      D ++LD  +    G E
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+  S  +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDLS++  A  V  +   I +   E++++           ++   L+ +
Sbjct: 125 RPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E++ +DV I +LR+ +    G  + + TV   GY L 
Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAI-AIPGAPDPVRTVRSAGYALE 227


>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
           [Nitrobacter winogradskyi Nb-255]
 gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 234

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR+++++RR+
Sbjct: 64  LCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S++  GD+ ++ D   V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV I +LR KL N  G  + I TV G GY L E 
Sbjct: 184 WGRDVYIDERTVDVHIGRLR-KLLNPDGELDPIRTVRGAGYALDEQ 228


>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   I   L    + V     G  G+     +  DA++LDL L  + G +
Sbjct: 6   RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  +   P+ +L+ +   ED+VRGLQ GADDY+ KPF+  ELV RI +++RRS  
Sbjct: 66  VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A +   +V G L V+   +   + G  + LTG+E+ ++  L        T+   L  ++
Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                 +   + V + +LR+KL         I T+WG GY 
Sbjct: 186 GWEY-GDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGYR 225


>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 246

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G + +   + +  DA+ILD+ L D+ G  
Sbjct: 22  RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 82  VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 141

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S +V GDL ++ D+  V      IHLT  E++++  L       L+K   L+ +
Sbjct: 142 AVARSESTLVVGDLVLDEDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++++I  LRKK+   AG    I T  G GY+++ 
Sbjct: 202 WNYDFGGQANVVELYISYLRKKI--DAGRSPMIHTRRGAGYLIKP 244


>gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
 gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKVLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 129/233 (55%), Gaps = 11/233 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    +L+++D+  +   + + L+ EN+ V   + GE+ +++   +E D IILD+ + D
Sbjct: 1   MKNAFCVLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF   + +R  K   P+ +L+  S   DKVRGL+ GADDY+ KPF+ +EL+AR+ A++
Sbjct: 61  MDGFTACKKIRE-KYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALL 119

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RRS      ++   +++V   A+ V V G RI+L  +EY ++  L   +    ++E   +
Sbjct: 120 RRSNQAFFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHD 179

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++    E    + +D  +  LR KL +A      I+TVWG GY    + +DE
Sbjct: 180 VIWGLDTEKGSYRTVDTHVKTLRFKLKDAGAK---IKTVWGIGYKF--DGEDE 227


>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
           JLW8]
 gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 5/233 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A+   + L +     N      GE  ++L +    D I+LD  L  + G E+
Sbjct: 5   ILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLPGMNGLEL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+      DKVRGL+ GADDY++KPF+  EL ARI+A++RR  
Sbjct: 65  ARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++     V      I L   E++++           T+   L+ ++
Sbjct: 125 PQMTDDPIELNGLRLDPTTHRVTGNQKTIDLGPTEFRLLHFFMTNSERVHTRSQLLDKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             R   E + +DV I +LR  LS A+G ++ I+TV G GY L      E  ++
Sbjct: 185 GDRVFVEDRTVDVHIRRLRNALS-ASGHEDLIQTVRGAGYRLSSQPS-EASQH 235


>gi|241114102|ref|YP_002973577.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
 gi|240868675|gb|ACS66333.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12D]
          Length = 228

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGMDGRHLAMTGDYDLLILDVMLPDLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR A+++ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILHALRSAELAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRSLLRRGS 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I   DL ++L  +     G RI LT KE+ ++ELL+ R    L + +  + ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRIALTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +       I TV G GYVL      E
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-EPKLIHTVRGMGYVLEGPEDGE 228


>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
 gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
           Tu6071]
          Length = 219

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+ L L +E + V +   G +G+       +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   L AR++A++RR  
Sbjct: 61  RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G L ++  A+ V + G  I LT KEY ++E L LR    ++K   L H++D
Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  I++V++  LR+KL     G   I TV G GY+L 
Sbjct: 181 FAYSGDPNIVEVYVSTLRRKL-----GAGLIRTVRGAGYLLE 217


>gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 135/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD+ +A+ +   LK  +F V     G++G+ +    ++D +I+D  L  + G 
Sbjct: 1   MKALVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      PV ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI ++VRR+R
Sbjct: 61  SIIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNR 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++   +   DL ++L A+TV+  GH I +  +E++++E L       +T+ M L  +
Sbjct: 121 QSAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+         ++T+ G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFETP-LLQTIRGAGYMLRETA 226


>gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
 gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP
           [Sphingobium japonicum UT26S]
          Length = 221

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L   +   L+   + V + D GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGQQLRNTLEGAGYAVDLADDGEDGHFLGATESYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGRGFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL         I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221


>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +A  I + LK+E F V     G+ G+++     +D +I+DL L +I G 
Sbjct: 1   MRILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R +R      P+ +L+   ++ DKV   +SGADDY++KPF   EL+ RI+A++RR  
Sbjct: 61  ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   DL ++  A  V   G  I LT KEY ++E L+      L++ M + H++D
Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I+DV++ +LR K+ +    +  I TV   GYV+ EN 
Sbjct: 181 QSFEGLTNIVDVYVRQLRAKI-DEPFDRKLIHTVRSVGYVINENG 224


>gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
 gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas maltophilia
           R551-3]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+    + +   L    + V +   G DG+ L +  E+  +ILD+ L  + G+
Sbjct: 1   MKLLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A    PV  L+  SSI D+V+GL+ GADDY++KPF   EL+AR+R ++RR +
Sbjct: 61  TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   IV  DL V+   + VE  G RI L+ KEY ++ELL+ R+   L + +  + ++
Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +    K  I TV G GYVL   
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFADK-LIITVRGMGYVLEAP 224


>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I+  LK E FNV   + G+D +++ K    + ++LD+ +  + G+  
Sbjct: 5   ILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMDGWTT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      PV +L+  +  ED++ G + G D+Y++KPF+ + LVA+++A+++R+   
Sbjct: 65  CKEIRKIS-QVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYPD 123

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +     D L +N  A   ++    I+L+ KE++++   +  K   L++E  L+ ++  
Sbjct: 124 ENNQDNFFDGLYINEKAHETKINDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL   A     I TV G GY   
Sbjct: 184 DYYGDLRTVDTHIKRLREKLGEKAY---LISTVRGTGYKFE 221


>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
           with phor [Cupriavidus taiwanensis LMG 19424]
 gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Cupriavidus taiwanensis LMG 19424]
          Length = 235

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR    +   P+ +L+     +DKV GL++GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 ++    L ++     V  Q      ++ L   E++++  L        ++   L
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDESGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LR  L    G  N IETV G GY L
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAAL-TPGGYSNMIETVRGSGYRL 229


>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Angola]
 gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
           pestis Angola]
          Length = 230

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 5   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 64

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 65  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 125 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 185 WGTNVYVEDRTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 226


>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
 gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
           WAL-14163]
 gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
           WAL-14673]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           ++L+++D+  +   +   L  + F V     GE+ I++  +  +   I+LD+ +  + G+
Sbjct: 5   KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+     +D+++G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  EVCRTIR-KYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSS 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q +I  G + ++  A  V V G  + L+ KE+++I   +  +   L++E  LN++++
Sbjct: 124 TMSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + + ID  + KLR KL +     +YI+T+WG GY    + 
Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFEVDG 225


>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
 gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
           z3032]
 gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
           ATCC 35316]
 gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 239

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 225


>gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis
           3_1_45B]
          Length = 218

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E   +     G   +       +  +ILDLGL    G 
Sbjct: 1   MRILLVEDDDMIGESVMAGLETEGHAIDWVRDGNSALLALNTTPYSLVILDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  +  TPV + +   +++D+++GL SGADDY+ KP++ +EL ARIRA++RRS 
Sbjct: 61  QVLKEMRGRRDPTPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G+L ++   + V  +G  + L+ KEY ++  L+ RK    ++      LY+
Sbjct: 121 GRADPVIERGELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      I+V I  LRKKL+++A     I+TV G GY+L 
Sbjct: 181 WDNTVGSNAIEVHIHHLRKKLADSA-----IKTVRGVGYMLE 217


>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
 gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus S110]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 127/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L   ++  L+   + V +   G +G  L    ++  I+LD+ L  I GF
Sbjct: 1   MRILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+A+R    + PV +L+    +ED+V GLQ GADDY+ KPF+  EL+ARI+A++RR +
Sbjct: 61  AVLQAIRRTS-NVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++L ++       R+ LT KE+ ++ +L  R+   L++      +++
Sbjct: 120 PQESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQVWE 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +++V I +LR K+ +       + TV G GYVL + + 
Sbjct: 180 MNFDSDTNVVEVAIRRLRSKI-DDPFEVKLLHTVRGMGYVLEDRSW 224


>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
 gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
          Length = 235

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A      L+S  +   + + G+  +   K   +D I+LDL L    G++
Sbjct: 3   RILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R   I  P+ +++  +   D +RGL  GADDYI+KPF+  +LVAR+R+ ++R   
Sbjct: 63  ICRKIRDE-IDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121

Query: 120 ----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     + +AQ  I   D+ +      V   G  + L  +E++++  L+   N   
Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +KE     ++      +   + V I +LR+KL +       IETVWG GY L
Sbjct: 182 SKEALFEKIWGFDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRL 233


>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus 95/8201]
 gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
 gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 241

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQSQ 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ ++NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 DVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVFVPDG 237


>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
 gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
           [Halothermothrix orenii H 168]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   ++  L+  +F++ +   G++ +     +  D IILDL L +I G E
Sbjct: 4   KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K  TP+ +L+   + EDKV G   GADDY+ KPF+  EL+ARI+AI+RRS  
Sbjct: 64  VCQKIRQDK-QTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A+   +     G L ++ +   V V G    LT  E+ ++  L        T+E     
Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     +   + ID  I  +RKKL         I TV+G GY    +
Sbjct: 183 VMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227


>gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
 gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
          Length = 228

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G +     E+D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYDAFFKDEYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
           transduction protein regX3 [Propionibacterium acnes
           SK137]
 gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA2]
 gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL096PA3]
 gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL097PA1]
 gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL099PA1]
 gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E+      D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLRQRG-NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++++   V V G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR K+ +       I TV G GY  +
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGYKFQ 225


>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++EDD  +A  +EL L+ E+++    + G   + L +  ++D ++LD+ +  + G E
Sbjct: 3   KIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           VLR  R+    TPV +L+  +S+ DKV GL  GA+DYI+KPFN EEL+ARIRA +R    
Sbjct: 63  VLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGAL 122

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +S    +      DL VN   + V   G  I LT +E+ ++  L   K   L +E  
Sbjct: 123 HTGKSENSKKHEYALADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           LN ++      +  ++DV+I  LRKK+ +       I TV G GY ++E  
Sbjct: 183 LNEVWGFEYAGDTNVVDVYIGYLRKKI-DHGHETALIHTVRGVGYTMKETG 232


>gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 220

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED+++ +  +  +L  E F+V V D G D +        D ++LDL L   PG EV R L
Sbjct: 2   EDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQLPGTPGTEVCRQL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ-- 124
           R    S PV +L+   S  DKV GL+ GADDY++KP++  ELVAR+RA++RR     +  
Sbjct: 62  RQRS-SVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEELI 120

Query: 125 -SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S +  G + ++++   V V G ++ L  KE++++E+L       LT+   ++ ++    
Sbjct: 121 TSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWGSDY 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + K +DV + +LR K+        Y+ TV G GY    
Sbjct: 181 VGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFEP 220


>gi|75761429|ref|ZP_00741398.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899799|ref|ZP_04064045.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228906846|ref|ZP_04070715.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|74491087|gb|EAO54334.1| Two-component response regulator yvrH [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228852850|gb|EEM97635.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228859818|gb|EEN04232.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 236

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 68  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 127 QAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234


>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      +    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   S +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G   ++ETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225


>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 219


>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225


>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 231

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +   + + L+ E   V     GE+G+       +D ++LDL L    G EV
Sbjct: 11  VLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TPV +++  +   D + GL++GADDY++KPF  EEL ARIRA+ RR+ G 
Sbjct: 71  CREIRRVS-TTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV GDL +      V   G  + LT  E+ ++  L+  +    ++E  L  ++  
Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + +++DV + +LRKK+         + TV G GY L E
Sbjct: 190 DYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRLPE 231


>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
 gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
          Length = 248

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD  L   +   L+ + F V                 FD I+LDL L    G  
Sbjct: 11  RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREHFDLIVLDLMLPGEDGLA 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A+   P+ +L+      D++ GL+ GADDY+ KPFN  ELVARI+A++RR   
Sbjct: 71  ICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQPH 130

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++V G + VNL  + +   G  I LT  E+ ++++L       L+++  
Sbjct: 131 SLPGAPTPEDEIVVFGRVRVNLGTRALTRDGEEIQLTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +            + IDV + +LRK + +      YI+TVWG GYV   +
Sbjct: 191 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPD 240


>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+   +I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  HVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V        L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVTTLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVRGTGYVLR 233


>gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 222

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K+LA  I+  L+ E + V V   GE+G+ + +    D IILD+ L  + G 
Sbjct: 1   MRILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPIVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R A + TPV +L+   ++ DKV GL SGADDY++KPF+ EEL+ARIRA++RR  
Sbjct: 61  TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+I   DL +N+    V   G +I L+ KEY ++E +++ KN  L++   + H+YD
Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +IDVFI +LR K+    G K  I TV G GY+L+E
Sbjct: 181 ENSDFDSNVIDVFINRLRNKIDREFG-KKLIHTVRGAGYILKE 222


>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 246

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 124/233 (53%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + +E+ +    + I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLREN 224
                +  I++ +I  LRKK+      + +G +      IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREP 241


>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
          Length = 240

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR +A++RR   
Sbjct: 67  ICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRNS 126

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPSKDVQVIEFGEYKLNLATREMTAGTTPLTLTSGEFAVLKSLVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ L        YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEKDPANPRYIQTVWGLGYVFVPDGE 238


>gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
 gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis
           ATCC 15826]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDDK +A  I   L    + V     G +G+ + +  ++D +I+D  L ++ G 
Sbjct: 1   MHVLIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   +STPV ILS +  ++D+V GL +G DDY+ KP+   EL+AR++A+ RR  
Sbjct: 61  SVIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRG 120

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q  ++    DL ++   + V   G +I+L  +E++++E L       +T+ M L  +
Sbjct: 121 GEIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR K+         I T  G GY L
Sbjct: 181 WEYHFDPQTNVIDVHISRLRSKIDKDF-DPPLIHTERGAGYSL 222


>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
           kansasii ATCC 12478]
          Length = 254

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I   +    D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  QILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   A     I TV G GY+LR 
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DADRDPMIHTVRGIGYMLRP 252


>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
          Length = 299

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL L++E+F VY     E+     +  E D  +LD+ +  I G E
Sbjct: 72  KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + P+ +L+   +  DK++GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 132 LCKKIRE-RYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      A+ ++    L +N       +    + LT  E+ ++ +L  +K   ++ E   
Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+ ++     YI+TVWG GY + +
Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299


>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
          Length = 247

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     GE+ + + +    + I+LD+ +  + GF V
Sbjct: 13  ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFGV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R      P+ +L+G+  I D++ GL+ GADDY+ KPF+ +EL ARI++++RRS   
Sbjct: 73  CQEIRKES-DIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDRM 131

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   G L+++ + + V     R+ LTG E+ ++ELL  R  +  ++ + L
Sbjct: 132 TVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVIL 191

Query: 176 NHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 192 QKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 240


>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  LA  +  +L+ E + V + + G   +        D ++LDL L  +PG E
Sbjct: 3   RVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLPGMPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR++    P+ +L+   S  D V GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRQLRLSS-HVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTP 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G +++++D  TV V G+ I++  KE++++E+L       LT+   ++ 
Sbjct: 122 DDADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + K +DV I ++R ++  +      + TV G GY   
Sbjct: 182 VWGTDYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGYRFE 226


>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
 gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
          Length = 226

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L    + V     GE+ ++     +  + ++LD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R      P+ +L+     +D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVVKEIRKVS-KVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTV 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G + +++    V + G  I+L+ KE+++++     +   LT+E  LN +++
Sbjct: 124 QTEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR KL        YI T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS---YIHTIWGMGYKFE 222


>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
 gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 251

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 33  MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R  +   PV ILS   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 93  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+++NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V +  LR+KL     GK+ I+TV G GY L E
Sbjct: 213 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 250


>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 111/226 (49%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +A  I + L+ E ++V     G++ I +      D +ILD+ +  + G+EV
Sbjct: 6   ILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKMDGYEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      P+  LS  +S  DKV GL  GADDY++KPF   ELVAR+ A +RR    
Sbjct: 66  TRQIRAQ-YHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLML 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S++  G + +  + +TV V   +I LT KE+ ++ LL+       + E   
Sbjct: 125 NQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENIF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++          + V I  LRKKL         I+TVWG GY  
Sbjct: 185 QQVWAEDYYEGRNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230


>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + LK+E + +       + +E  +    D IILD+ L  + G E
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  LS      DK++GL SGA+DYI+KPFN  EL+ARI++ +RR R 
Sbjct: 66  ACLKIREQ-YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +       G L V+ + + V ++   + LT KE+ ++ LL   K    + E    
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++         + V I K+R+K+        Y++TVWG GY 
Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 232

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L+   + V     G + +        DA+I+D+ +  + G 
Sbjct: 3   MHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ RRSR
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL+++   + V     RI LT  E+ ++ +        L +   L
Sbjct: 123 PEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++          ++V+I  LR+K  +  G    I TV G GYVLRE
Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-GEARLIHTVRGVGYVLRE 229


>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
 gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
 gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
          Length = 225

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K ++  I   L++ENF+V     G +     +   F   ILD+ L DI GF+
Sbjct: 3   KILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+  S   DK+ GL  GADDYI+KPF   E++AR++A +RRS  
Sbjct: 63  LCKIIRKKH-HYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  Q+ ++  +L ++++ +   +Q   + LT  E+ +++LL  RK   ++ E     +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +        I V +  LR+K+ +     +YI+TVWG GY +
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
 gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
 gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
 gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas gardneri ATCC 19865]
          Length = 227

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL    G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220


>gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
 gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
           43970]
          Length = 239

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  ++      G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLMLPGSDGITI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232


>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 236

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   + L L+ +N  +Y    G D  E+ +  + D  I+D+ +  I G+ 
Sbjct: 3   KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIMMPKIDGYH 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +++ +R  K   PV +LS  S   DK+ GL+ GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 63  LVKKIRE-KYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     + +  +  G L +N    T+   G  I LT  EY++I  L        TK
Sbjct: 122 YHSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTK 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +++D     +   I V I  LR K+ N +    YI+T+ G GY  
Sbjct: 182 KQIFEYVWDEPFYGDDNAIMVHISNLRDKIENDSKNPEYIKTIRGLGYKF 231


>gi|228998532|ref|ZP_04158120.1| Response regulator [Bacillus mycoides Rock3-17]
 gi|229006008|ref|ZP_04163698.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228755276|gb|EEM04631.1| Response regulator [Bacillus mycoides Rock1-4]
 gi|228761257|gb|EEM10215.1| Response regulator [Bacillus mycoides Rock3-17]
          Length = 240

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    G +GI +CK  + D IILD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIILDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +++A  RR++
Sbjct: 72  SVCQQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ I+   GD+ ++    TV      + LT KE+ ++  L    N   +K      +
Sbjct: 131 YQEKARIMYQFGDIRIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V +  LR+K+ +     +Y+ TV G GY L
Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKL 233


>gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
 gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum
           SK46]
          Length = 224

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++++ E F+  V D G + ++  +    D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLMLPGMSGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+  +   D V GL+SGADDY++KPF  +ELVAR+RA +RR   
Sbjct: 64  VCRTVRETS-AVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRQED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V   G  I LT  E+ ++  L+ R     +++  L  ++  
Sbjct: 123 SPSETLEVGDLTIDVPGHAVFRDGKEISLTPLEFDLLHALASRPKQVFSRDELLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 QHTSDTRLVNVHVQRLRSKIELDPENPQIVLTVRGVGYK 221


>gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58]
 gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58]
          Length = 221

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L H +   L+   + V +   GEDG  L     +DA++LDLGL  I G 
Sbjct: 1   MRLLIVEDEPSLGHQLRTTLEGAGYAVDLATDGEDGHFLGSTESYDAVVLDLGLPTIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRKEGKTFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V ++G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ ++RKKL         I T+ G GY L E  +
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----VITTIRGLGYSLDEPGR 221


>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 229

 Score =  269 bits (690), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225


>gi|325571287|ref|ZP_08146787.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325155763|gb|EGC67959.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 237

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 122/235 (51%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G+E        +D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEAVFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 120

Query: 119 SRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           S    ++          IVT    +N   +   + G  I  LT KE+ ++  L+ +    
Sbjct: 121 SELVEKTTPEASDATFDIVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 233


>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DDK +   + + L +E + +     G + +E  +    D +ILD+ + ++ G E
Sbjct: 4   RILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R    + P+ + S  ++  DK+ GL +GADDY++KPFN  E++AR+++++RRS  
Sbjct: 64  VTKRIR-KNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSNY 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +I  G L ++  +  V   +G  I LT  E+ ++ LL+   N   + E   +
Sbjct: 123 TQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEIFD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   +    K + V I  LR+KL  A  G+  I+TVWG GY + 
Sbjct: 183 RCWKMENFVSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGYKIE 228


>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 231

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L+   F       G   + L +    D ++LDL L D+ G +
Sbjct: 4   RILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVDGAD 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R      S P+ +L+      D++ GL+ GADDYI+KPFN  E+VAR+RA++RR+
Sbjct: 64  LTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRT 123

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G       ++  G L ++LD     V    I+LT  E++++ +L        T+   + 
Sbjct: 124 GGGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELIE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  E   + ID  I  LR+KL +AAG    IETV+G GY L
Sbjct: 184 QGPGYDYEGMERTIDSHIKNLRRKL-DAAGAGVRIETVYGVGYRL 227


>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L   ++  L+   + V +   G +G  L    E+  ++LD+ L  I GF
Sbjct: 1   MRILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+A+R  K + PV +L+    +ED+V+GLQ GADDY+ KPF+  EL+AR++A++RR +
Sbjct: 61  TVLQAIRRTK-NVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL +++ ++ V     R+ LT KE+ ++ +L  R+   L++      ++D
Sbjct: 120 AQDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +++V I +LR K+ +       + TV G GYVL + + 
Sbjct: 180 MNFDSDTNVVEVAIRRLRSKI-DDPFEVKLLHTVRGMGYVLEDRSW 224


>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 239

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+ S+NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGEFSLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 235

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 14/235 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+K +   I + L ++ +NV+    G +G+++         I+D+ +  +
Sbjct: 1   MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++   LR +K   PV +LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +R
Sbjct: 61  DGIQMTMKLR-SKFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLR 119

Query: 118 RSRG---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R               +  +   L +N + K V V    + LT  E++++ LL       
Sbjct: 120 RYSKYLNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 180 FSADEIYEKVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|218896157|ref|YP_002444568.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218545429|gb|ACK97823.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 234

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 118/223 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  LA      L+   + V V   GE G       E+  I+LD  L  + G 
Sbjct: 1   MRLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + P+ +++   +  DKV GL +GADDY+ KP +  EL+ARIRA++RR  
Sbjct: 61  GLCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++     V    H + LT  E+ ++EL        L++++ ++HL+D
Sbjct: 121 ATPSPLLYWGDLCLHPLNHEVTYASHPVKLTPTEFSLLELFLRSGLRVLSRKIIISHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D P  + +   I  LR+KL+ A   K +IET+ G GY ++ 
Sbjct: 181 LEDPPGEETVKAHIKGLRQKLTEAGAPKTFIETIRGVGYRMQP 223


>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +  D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
           bemidjiensis Bem]
          Length = 226

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ LA  +   L+ E +   +   G +G+        D IILDL L  + G EV
Sbjct: 4   ILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+ ++ +   PV +L+      DKV G + GADDY+ KPF+  EL  R++A++RRS 
Sbjct: 64  CKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRRSN 123

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + ++I  G ++++ D   V V G  I  T  E++++ +L+ R     ++++ L  +
Sbjct: 124 TETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEFKLLHVLAQRLGRVQSRDVLLRDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I +LR K+  A    + I+TV G GY L 
Sbjct: 184 WGYNFVDDSRTVDTHITRLRTKMGAAG---DLIKTVRGFGYKLE 224


>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 252

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D++ LA  +   L+ E+F V V   G D + L +  + D ++LDLGL  + G E
Sbjct: 18  RALVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  S+  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 78  VCRQLRTFSDAY-VVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRK 136

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                      G  ++  V G LS+++  + V +    + LT  E+ ++ +LS R     
Sbjct: 137 APVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAF 196

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +  ++         ++DV +  LR+KL +      Y+ TV G GY +
Sbjct: 197 SRRQLIEAVWGESWVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 248


>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 220

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D  +LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220


>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
 gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
          Length = 220

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FDA++LDLGL  + G 
Sbjct: 1   MRLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I    + ++   + V   G  + LT KEYQ++  L       +T++  +  LY 
Sbjct: 121 GRARVVIEHAGICLDPSTQQVSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK          I TV G GY++ E
Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSELIRTVRGVGYLVEE 218


>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
 gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
          Length = 244

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 18  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 78  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 136

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 137 NQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 197 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 244


>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
 gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
          Length = 232

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      E    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLPGTSGLTL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDIIDVGGLKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G   ++ETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRF 225


>gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T92]
 gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM
           1503]
 gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T17]
 gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T46]
 gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           K85]
 gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           210]
 gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           4207]
 gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           R506]
 gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
           V2475]
 gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium
           tuberculosis H37Rv]
 gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis]
 gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis
           AF2122/97]
 gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis str. Haarlem]
 gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           H37Ra]
 gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis F11]
 gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T46]
 gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CPHL_A]
 gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis K85]
 gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T17]
 gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           02_1987]
 gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis T92]
 gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           EAS054]
 gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis GM 1503]
 gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
           T85]
 gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium
           tuberculosis 94_M4241A]
 gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu001]
 gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu002]
 gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu003]
 gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu004]
 gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu005]
 gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu006]
 gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu008]
 gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu009]
 gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu010]
 gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu011]
 gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu012]
 gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis W-148]
 gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis KZN 4207]
          Length = 257

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 151

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 152 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        I+D++I  LRKK+   +  +  I TV G GY+LR  
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPP 256


>gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system
           with AgrS [Cupriavidus metallidurans CH34]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+      +   L   +F V +   G DG+      ++D +ILD+ L  + G+
Sbjct: 1   MKILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV  L+    +ED+V+GL+ G DDY++KPF   EL+AR R ++RR  
Sbjct: 61  EVLKELREHK-DTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++L    V   G RI L+ +E+ ++  L+ R    L++    +H++D
Sbjct: 120 TREAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR K+ +       I +V G GYVL 
Sbjct: 180 MNFDSDTNVVDVAIRRLRAKM-DDTYAPKLIHSVRGIGYVLE 220


>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ +A +++  L++E F V + + GE  + L +  ++  I+LDL L    G+
Sbjct: 1   MQVLVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR A I+TPV IL+      D+   L  GADDY++KPF+   L+ARIRA++RRS 
Sbjct: 61  DVCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  A        R+ LT +E+ ++E L    +T ++K   L  ++D
Sbjct: 121 PQRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  I++V++  LR+K+ +   G++ I+TV G GY L
Sbjct: 181 AWFEGDPNIVEVYVGYLRRKI-DIPFGRSAIDTVRGVGYRL 220


>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR+   
Sbjct: 65  CRKVRE-SLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V + ++R K+     G+  I TVWG GY + +
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
 gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium
           ulcerans Agy99]
          Length = 257

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I        D ++LD+ L D+ G 
Sbjct: 32  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 92  QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 151

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 152 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 211

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   A  +  I TV G GY+LR 
Sbjct: 212 VWNYDFAGRTSIVDLYISYLRKKI--DADREPMIHTVRGIGYMLRP 255


>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
 gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
          Length = 226

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ + + ++  +L+ E F+V + + G D +        D ++LDL L  + G E
Sbjct: 3   RVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ ++S   +  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQTS-SVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVA 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G + +++D   V V G    L  KE++++E         LT+   ++ +
Sbjct: 122 EDDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV + +LR K+         + TV G GY  
Sbjct: 182 WGADYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGYKF 224


>gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 233

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +LK E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  K   P+  L+  +S  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMQ 124

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      I  G   ++  +  + V G+ +  + + +Q++       N   +KE    
Sbjct: 125 QSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIYE 184

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 244

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+IED+  +A  +   L+   F V V   G++G+   +      +ILDLGL  + G EV 
Sbjct: 13  LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGVEVC 72

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR    +  + +++  +   D V GL  GADDY++KPF   EL+ARI A++RR R   
Sbjct: 73  RQLRTF-TNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPRPTP 131

Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G+L+++   + V+V+   + LT  E+ ++E L+ R     ++E  L  ++ 
Sbjct: 132 TGESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLTEIWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +  +++V +  LR+KL ++A    +I TV G GY + +
Sbjct: 192 PDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGYRMGD 234


>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 223

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  + F+V     GE+ ++L  +  +   IILD+ +  + G+
Sbjct: 5   KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  ETCKTIR-KYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 124 AVTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+       +YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGEKG---DYIKTIWGMGYKFE 222


>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 225

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHISTVIRVGYKFEE 225


>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
 gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 245

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E F V + +  +    +      D I+LDL +    G  
Sbjct: 12  KILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL+ GADDY++KPFN  EL+ARI A++RR   
Sbjct: 72  ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRPT 131

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q +I  G  S ++  +T+   G  + LT  E+ M++ L       L++E 
Sbjct: 132 AEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSREK 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                     EP  + +DV + +LRK +   A    YI+TVWG GYV   + 
Sbjct: 192 LAQLARGREFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVFVPDG 243


>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
           ATCC 25196]
 gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
           [Nitrosospira multiformis ATCC 25196]
          Length = 234

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I   L+     V  T   E+ +++      D ++LD  L  + G + 
Sbjct: 5   ILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMSGADF 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +L+  +   DKV GL+SGADDYI+KPF+  EL+ARI+A++RR  
Sbjct: 65  ARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRA 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   ++  G L ++     V      + L   E++++  L        ++   L+ ++
Sbjct: 125 PEAADDVVEIGGLRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L N       ++TV G GY L
Sbjct: 185 GDHVFVEDRTVDVHIRRLRKALENVDKD-GLVQTVRGSGYRL 225


>gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 235

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 113/235 (48%), Gaps = 14/235 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+K +  +I + L ++ +NV+    G +G+++ K       I+D+ +  +
Sbjct: 1   MKLYNVLIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNETIHLAIVDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++   LR      PV +LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +R
Sbjct: 61  DGIQMTMKLRGE-FDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLR 119

Query: 118 RSRG---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R               +  +   L +N + K V V    + LT  E++++ LL       
Sbjct: 120 RYSKYLNVINNLEEKNNNFIIDGLELNAETKEVFVDEEPVKLTPIEFKILHLLIKNPGRV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 180 FSADEIYEKVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 233


>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
 gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
           [Alteromonadales bacterium TW-7]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +  +L+   F     +  +  I        D ++LD  L    G +
Sbjct: 4   KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +  +  + +   P+ +L+     EDKVRGL+ GADDY++KPF+ +EL+ARI+A++RR 
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V  +G+ + +   E++++           ++E  L+H+
Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIGPL-GHDRLVQTVRGAGYRF 225


>gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 226

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 133/227 (58%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRILL+EDD  +   +   L+     V   D G+DG+ L     +D +ILD  L   I G
Sbjct: 1   MRILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR  K +TPV +LS ++ ++++V GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRG 120

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q+ +V GDL ++L ++TV+  G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D   +P+  +IDV + +LR+K+ +    K  I T+   GY+LR +
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKV-DKPFDKPMIHTIRNAGYILRAD 226


>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
 gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 241

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR  +   P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQQENPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQIA 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + +I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPAQQEEMIEFGEFSLNLATREMFHGDESIALTSGEFAVLKVLVNHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVFVPDG 237


>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 239

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEDAVISFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
           SIP3-4]
 gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
           MP688]
 gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
           [Methylovorus sp. MP688]
          Length = 228

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   + L L     N       E    L +    D IILD  L  + G E 
Sbjct: 5   ILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLPGMSGIEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  + +   P+ +L+      DKV+GL+ GADDY++KPF+  EL ARI+A++RR  
Sbjct: 65  ARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G L ++     V   G  + L   E++++  L        ++   L+ ++
Sbjct: 125 PQMTDDPIEVGGLRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             R   E + +DV I +LR  L   +G ++ I+TV G GY  
Sbjct: 185 GDRVFVEDRTVDVHIRRLRLAL-ADSGHEDLIQTVRGVGYRF 225


>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 233

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ +   +   L++  F V +   G   +        D ++LD+ +  + G E
Sbjct: 7   RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+ +   E+++ GLQ GADDY++KPF+ +EL  R+ +++RR+R 
Sbjct: 67  VCRRLRQTS-QVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRARM 125

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +V G+L + + A+   + G  + LT +E+ ++           ++   L  
Sbjct: 126 PRPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   + V + +LR+K+         + TVWG GY 
Sbjct: 186 VWGWDF-GDQSTVTVHVRRLREKIERDPAKPVRVATVWGVGYR 227


>gi|228995879|ref|ZP_04155537.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
 gi|229003496|ref|ZP_04161314.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228757734|gb|EEM06961.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock1-4]
 gi|228763851|gb|EEM12740.1| Two component transcriptional regulator, winged helix [Bacillus
           mycoides Rock3-17]
          Length = 216

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 8/216 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
           + E + VY    G +G  + + Y+ D IILDL +    G+E+   +R    + P+ +L+ 
Sbjct: 2   EREGYEVYTAVNGIEGWNVFQQYQPDLIILDLMMPKKDGWELCEEIRQ-YSNVPIIMLTA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-------QSLIVTGDLS 133
                D++ GL  GADDY++KPF+  ELV R++ I+RR              +I   DL 
Sbjct: 61  RGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQATIQEKEPVSEMIEFLDLK 120

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++   + V V GH I LT KE++++ +++       ++   L  +++   E     + V 
Sbjct: 121 IDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQLLEQIWNFEYEGCTNAVTVL 180

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + +LR+KL        +I TVWG GY    +  +ET
Sbjct: 181 MSRLREKLEKHTTKNRWIHTVWGIGYRFEPDGGNET 216


>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 255

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 121/235 (51%), Gaps = 14/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L    + V V   G + + + +    D I+LD+ L  + G+ 
Sbjct: 15  KILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDGYG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR      P+ +LS +  I D++ GL  GADDY+ KPF+ +EL ARI  I+RR   
Sbjct: 75  VCRELRKLS-DVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDD 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S   +  ++   D+ ++ + + V  +G R+ LT  E+ ++ELL  +    + +  
Sbjct: 134 SPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAE 193

Query: 174 FLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRE 223
            L  L+    R   +++++DV++ +LR KL         I TV G GY    L++
Sbjct: 194 ILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGYTSQRLKD 248


>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 234

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  IE+ L S+ + V+  +    G+E+    +   ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIMMPGMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYT 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S+  A + I    + +N D   V V    I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFERVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
 gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + LK+E + +       + +E  +    D IILD+ L  + G E
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIMLPKMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  LS      DK++GL SGA+DYI+KPFN  EL+ARI++ +RR R 
Sbjct: 66  ACLKIREQ-YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +       G L V+ + + V ++   + LT KE+ ++ LL   K    + E    
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++         + V I K+R+K+        Y++TVWG GY 
Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|161525507|ref|YP_001580519.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189349765|ref|YP_001945393.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342936|gb|ABX16022.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189333787|dbj|BAG42857.1| two-component system copper resistance phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 227

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+   A  +   L    F V +   G DG        +D +ILD+ L D+ G+
Sbjct: 1   MKLLVIEDENKTADYVRQGLMEAGFVVDLARNGLDGHHQAMSETYDLVILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++++LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  RIVQSLREAGKQVPVLFLTARGGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I   DL ++L  +     G RI+LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APNHPDRIQIADLLLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ + A     I TV G GY L     D
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDAFDPKLIHTVRGMGYTLDAPDAD 227


>gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 221


>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 248

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +   +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKE 129

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 NAAGIPNSGMIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
 gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
           with PhoR [Vibrio fischeri ES114]
          Length = 230

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  + L      D I+LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  + +   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + + LI    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L    G    ++TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VEGHDRLVQTVRGAGYRFSVQA 229


>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
 gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++   ++   PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    LS++  +  V    + + +   E++++           ++E  LN++
Sbjct: 124 SPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEQ-SGHDRMVQTVRGTGYRF 225


>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
 gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
           [Anaerolinea thermophila UNI-1]
          Length = 244

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I L L+ + F V     G + +E  +    D ++LD+ L D+ GFEV
Sbjct: 10  ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R +  +TPV +L+     +D+VRGL+ GADDYI+KPF+  ELV+R++A++RR    
Sbjct: 70  LKLIRESS-NTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVEAT 128

Query: 123 A----QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +      +I   D L ++   + V V+G+ + L   EY+++  L       +T E  L  
Sbjct: 129 SLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLLTK 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E   + +++  LR+K+        YI T  G GY   +
Sbjct: 189 VWGYEYRDEEHYVRLYVNYLRQKIEEDPSNPKYILTERGVGYRFVD 234


>gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  ++  L+ ++  V V   G+ G  +     +D I+LD+ L  + GF
Sbjct: 6   MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++++R  K  TPV +L+ M S++DK+ G ++GADDY+ KPF   EL+AR+RA+ +RS 
Sbjct: 66  DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   +++   DL ++L+ K       RI LT KE+ +++ L   +   +++      +
Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +    +IDV++  LRKK+      K  I TV G GY+L+E+
Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTK-LIHTVIGMGYMLKED 230


>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 232

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +  +    ILD+ L  + G+E
Sbjct: 5   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ R+R+++R    
Sbjct: 65  VCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNL 124

Query: 118 ---RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              R +  ++  +  G  ++++ AK+       I +T  E+ +++     K   +T++  
Sbjct: 125 SQARPKDDSKENLTDGPFTLDIYAKSFYKNNKEIDVTPTEFTILQNFIKNKGKAMTRDEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+ +      +IETVWG GY  +
Sbjct: 185 MTQTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEFIETVWGTGYRWK 232


>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V    + + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225


>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
 gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
           2876]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++A   +  L+  ++ V +   GE G  +    ++   ILD+ L    GFE
Sbjct: 3   RILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLPGKDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R  K + P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKAIRKEK-NIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYDR 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    L ++  A+ V V       T KE+ ++  L+   N   +K+   
Sbjct: 122 LVASTVPQNDVLEIRGLKIDKTARRVFVNNEEKVFTTKEFDLLLFLASNPNKVFSKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 RNIWDMESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRFK 228


>gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 226

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 132/226 (58%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  ++  ++  L +E + V V+  G +G+EL + + +D IILD+ L  + G 
Sbjct: 1   MRILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMMLPRMDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R      PV +L+   S+EDKVR  ++GADDY++KPF   EL+ R +A++RR  
Sbjct: 61  EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +  G+L ++   + V+  G RI LT KEY ++E L       L++ M + H++D
Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    I+DV++  LR K+ +       I TV G GY++R   +
Sbjct: 181 QSFDGITNIVDVYVRHLRAKV-DDGHIIKLIRTVRGSGYMIRAGGE 225


>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L+ +NF+V     GE+ +++  +  +   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+      D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   ++  G + ++  A    V G ++ L+ KE++++      +   L++E  LN ++
Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     + + ID  + KLR K+ +      YI+TVWG GY    +A+
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFEVDAQ 227


>gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 247

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V     GE+ +++         ILD+ +  + G E+
Sbjct: 21  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  +N   T E   
Sbjct: 140 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247


>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      +   L    + V V   G DG+ L     +D I+LD+ + ++ G+
Sbjct: 1   MRILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ L  A++ TPV  LS   ++ED+++GL  GADDY+ KPF+  EL+ARIR I+RR +
Sbjct: 61  SVMKKL-GARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQ 119

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +  GDL +++  + VE  G RI LT KE+ ++      +   L++ +  + ++
Sbjct: 120 PQKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIASRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           D   + +  ++DV + +LR+K+ +       I TV G GY 
Sbjct: 180 DMNFDSDSNVVDVAVRRLRQKI-DEPFEVRLIHTVHGVGYR 219


>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-TGHDKMVQTVRGTGYRF 225


>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 234

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   IE+ LK++ + V+    G +G+E+ +  +    I+D+ +  + G  +
Sbjct: 6   ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIMMPKMDGITM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR      PV +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKLREQH-DFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +L V G + +N D K V V G  + +T KE+ ++ LL        + E 
Sbjct: 125 LKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               ++   D    + I V +  +R+K+   +    Y++ VWG GY + +
Sbjct: 185 IYERVWK-EDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGYKIEK 233


>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 290

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+    + D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS + +I ++V GL  GADDYI KPF+ +EL ARI  I+RR    
Sbjct: 88  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +           Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 SATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI]
 gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 234

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A S          G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G++     +++ IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAVK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    +  T KE+ ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 182 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227


>gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
 gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 224

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  LA ++   L +E F V V   G DG+E     +FD ++LD+ L  + G+
Sbjct: 1   MRILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  ++ TPV +LS      D+      GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G+L+++   + V      + LT +EY ++E L   K   ++K   L  ++D
Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++V+I  LR+K+ +A  G   IETV G GY L
Sbjct: 181 SNYDGDDNVVEVYIGYLRRKI-DAPFGMATIETVRGVGYRL 220


>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 119/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  E F V V   G D +       +D I+LDL L  + GF
Sbjct: 1   MRVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A+   PV +LS    + D+VRGL  GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L ++   +     G  + L+ KE+ ++E L       L++   L+H++D
Sbjct: 121 QERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    ++D ++  LR+K+    G     ETV G GY LR NA
Sbjct: 181 LAYDRNSNVVDQYVAYLRRKIDKPFGVAQL-ETVRGAGYRLRVNA 224


>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 232

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  +I++ LK+E   V+    G D + L +  E   I++D+ +  + G + 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S       +  G + +N + K V V G  + LT  EY+++ELL   K    + E    +
Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        Y++ VWG GY ++E 
Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231


>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
           KPA171202]
 gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 232

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L+   + V     G + +        DA+I+D+ +  + G 
Sbjct: 3   MHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      P+ IL+   +++D+V GL +GADDY+ KPF  +EL+AR+RA+ RRSR
Sbjct: 63  EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +   DL+++   + V     RI LT  E+ ++ +        L +   L
Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++          ++V+I  LR+K  +       I TV G GYVLRE
Sbjct: 183 HEVWGFDFPTTANSLEVYIGYLRRKTEHD-CEARLIHTVRGVGYVLRE 229


>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 239

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G + +        D I+LD+ L D  GF V
Sbjct: 10  VLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGFAV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+ G 
Sbjct: 70  TRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGGP 129

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        +   DL V+ +  TV   G  + L+  E++++  L       L K   L  
Sbjct: 130 APVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQE 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + +I+D +I  LR+K+     G   I TV G GY LR
Sbjct: 190 VWQYGFAGDTRIVDTYIKNLRRKI--DQEGPPLIHTVRGVGYCLR 232


>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 229

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   +   L+ E F VY  + G++ I+  +    D ++LD+ + ++ GF  
Sbjct: 7   ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDEMDGFTA 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+     +DKV GLQ GADDYI KPF+  ELVARI   +RR++G 
Sbjct: 67  CKEIRAFS-QIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQGI 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   +     +L +    + V V G  I LT KEY ++  L   +    T+E   + L+
Sbjct: 126 QQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRLW 185

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  ++ +D  I  LR KL  A     +I+TVWG GY    ++
Sbjct: 186 GMDTQQGTLRTVDTHIKTLRLKLKPAD---RFIKTVWGVGYKFEVDS 229


>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
 gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
 gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
          Length = 247

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L+ E F V+  D GE+ +E+    +    ILD+ +  + G E+
Sbjct: 21  ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 81  CRRIRE-KYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 139

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L+++ +N   T E   
Sbjct: 140 NQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEIY 199

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 200 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247


>gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
 gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314]
 gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB
           [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +E  L    F       G D +   + +  D +ILDLGL ++ G E
Sbjct: 14  RVLIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S EDK+ GL  GADDYI+KPF   ELV R+RA++RR R 
Sbjct: 74  VCRQVRAFS-DCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRI 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A TV V G  + +T  E+ ++  L+LR     ++   + 
Sbjct: 133 TVTGPGTDAPLIIGDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D     + +I+DV I  LR+KL   A G+  I+TV G GY L
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237


>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 226

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 219


>gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 218

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K LA  +   L+   F   +   G +   L +   +DAIILDLGL    G 
Sbjct: 1   MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR++A+VRR+ 
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H+Y 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   ++VFI ++RKK        + IETV G GY + E
Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----THADLIETVRGLGYRINE 218


>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 239

 Score =  269 bits (689), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A  + L L+ E + +     G     L     +DA+ILDL L ++ G E
Sbjct: 6   KILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPNVNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I+S  +S   +V GL+ GADDY+ KPF+  EL+ARI+A+ RR   
Sbjct: 66  ICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQEA 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q++      I    L +N  ++ V +   ++ LT +E+ +    +       ++   L
Sbjct: 126 MGQNILLAGGLICCHGLCINPFSREVHLHNKQVDLTPREFDLRLWFARHPGEVFSRLSLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++++  + E     ++  I +LR K+   A     I+TVWG+GY  
Sbjct: 186 DNVWGYQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231


>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
           protein [Actinomyces oris K20]
 gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
 gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
          Length = 249

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF 
Sbjct: 16  HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+  
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H+
Sbjct: 136 IENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227
           ++     +  I++ +I  LR+K   +  A G      I+T  G GY+LRE   +
Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249


>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
 gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
          Length = 232

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  +I++ LK+E   V+    G D + L +  E   I++D+ +  + G + 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G + +N + K+V V G  + LT  EY+++E L        + E    +
Sbjct: 125 NNYKSNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        Y++ VWG GY ++E 
Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231


>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
 gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum PSI07]
          Length = 237

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL +GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVE-VQGH-----RIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 ++    L ++     V  + G      ++ L   E++++  L        ++  
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAMNGESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L+   G  N IETV G GY L  N 
Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAP-GGYSNMIETVRGSGYRLARNP 235


>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 229

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G  
Sbjct: 7   RLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL + R  K   PV IL+      DKV+G  +GADDY++KPF+ EE++ARIRA++RRS G
Sbjct: 67  VLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSTG 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           HAQS +  G + ++     V V G+ I +T  EY+++  L       +++   + HLYD 
Sbjct: 127 HAQSELTCGPVVLDTRTGRVTVDGNPIKMTSHEYRLLAYLMHHAGRVVSRTELVEHLYDQ 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + +   I+VF+ ++RKKL         I+TV G GY+L     D
Sbjct: 187 DFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLLAPPTTD 227


>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
 gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
          Length = 233

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++ED+ A+   + + L+   ++V   + GE  ++  +    EFD  ILD+ +  I G
Sbjct: 3   RILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             V + LR    +  + +L+  +   DKV GL  GADDY++KPF+  ELVAR+ ++ RR 
Sbjct: 63  LTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + Q  +V+GD  +NL  + ++ +G  I LT  E+Q++E         L + 
Sbjct: 123 AIAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRT 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L H++      E KI+DV I +LR K+ +      +I TVWG GY   
Sbjct: 183 NILTHVWGEAYYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGYKWE 232


>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
 gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
           regulator PhoP [Mycobacterium tuberculosis H37Ra]
          Length = 247

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + LK + F VY    G   ++  +    DA+ILD+ +  + GF 
Sbjct: 22  RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR   I  P   L+   S++DK+ GL  G DDY++KPF+ EE+VAR+R I+RR+  
Sbjct: 82  VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +   D+ ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  + T+ G GYVLRE 
Sbjct: 202 VWRYDFGGDVNVVESYVLYLRRKI--DTGEKRLLHTLRGVGYVLREP 246


>gi|228994834|ref|ZP_04154632.1| Response regulator [Bacillus pseudomycoides DSM 12442]
 gi|228764942|gb|EEM13698.1| Response regulator [Bacillus pseudomycoides DSM 12442]
          Length = 240

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K + + +E +LK E F  +Y    G +GI +CK  + D I+LD+ L D+ G+
Sbjct: 12  KILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIMLDIMLPDLDGY 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+  LS  +   DK+ GL  G DDYI+KPF+ +E+  +I+A  RR++
Sbjct: 72  SVCQQIRQFTF-VPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKIKAFFRRNQ 130

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ I+   GD++++    TV      + LT KE+ ++  L    N   +K      +
Sbjct: 131 YQEKARIMYQFGDITIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         I+ V +  LR+K+ +     +Y+ TV G GY L
Sbjct: 191 WGETYLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKL 233


>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +   +  ML+ + +         + + L K    + I+LD  +    G 
Sbjct: 3   MRVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGSGI 62

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + ++ ++  +   + P+ +L+     EDKVRGL+ GADDYI+KPF+ +EL ARI+A++RR
Sbjct: 63  QFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRR 122

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S   A + +I    L ++  +  V      + +   E++++           ++E  LN+
Sbjct: 123 SAPTATEEVIDVQGLRLDPVSHRVTANDLPLDMGPTEFRLLHFFMTHPERVYSREQLLNN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +DV I +LRK +    G    I+TV G GY  
Sbjct: 183 VWGTNVYVEDRTVDVHIRRLRKAM-AVTGHDVLIQTVRGSGYRF 225


>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 229

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-HSGHDRMVQTVRGTGYRF 225


>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
 gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
           [Burkholderia rhizoxinica HKI 454]
          Length = 256

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 28  ILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKSGVAF 87

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 88  ARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 147

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  +    L ++     V     G   ++ L   E++++           ++   L
Sbjct: 148 PQLTEDSVSINGLRLDPATHRVAASRNGEQTQLDLGPTEFRLLHFFMTHPERVHSRTQLL 207

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L + A
Sbjct: 208 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKTA 256


>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 245

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  + + L+ E + V     G + + + +    DA++LD+ L D+ G  
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 81  LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++SL+  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 141 AAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG    I T  G GY+++ 
Sbjct: 201 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 243


>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
          Length = 239

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L +     ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
           protein (C-terminal) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 224

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D++ +A  I+  L+ E F   V   G + +   +    D IILDL L  I G 
Sbjct: 1   MKILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + ++      P+ +++  +   D V GL+ GADDYI KPFN  ELVAR+R++ RR+ 
Sbjct: 61  DLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTT 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +Q     I TG + +N  A  V V+G  I LT  E+++++L +       +++  L+ 
Sbjct: 121 DPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKLLDR 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++        + +DV I +LR KL      K  +ET+ G GY  R+
Sbjct: 181 IWGKDVFVTDRTVDVNIKRLRDKL---LSEKERLETIRGVGYRFRD 223


>gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 234

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++   ++   PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEVQGLSLDPTSHRVMANEAPLDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDKMVQTVRGTGYRF 225


>gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
 gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  ++      G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLMLPGSDGISI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQPSESAPLLIDESRFQASYQGHFLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL +  G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 229

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + LK+E + +       + +E  +    D IILD+ L  + G E
Sbjct: 6   KILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  LS      DK++GL SGA+DYI+KPFN  EL+ARI++ +RR R 
Sbjct: 66  ACLKIREQ-YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +       G L V+   + V ++   + LT KE+ ++ LL   K    + E    
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEKTRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++         + V I K+R+K+        Y++TVWG GY 
Sbjct: 185 MVWEDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
 gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
          Length = 226

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 130/220 (59%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+     I      E + V V   G +G+       FDAI+LD  L  + G  
Sbjct: 4   RLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++++R A + TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL ARI A++RR + 
Sbjct: 64  LIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQE 123

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   ++  DL ++L  + V   G  I LT +E+Q++E    RKN  +++ M L  ++D
Sbjct: 124 AEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +P   ++DV I KLR++L         IETV G GY+
Sbjct: 184 YHFDPNTNVVDVHISKLRRQLDGDGADP-VIETVRGAGYM 222


>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 270

 Score =  269 bits (689), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G++ +      + D +ILD+ L D  GFE
Sbjct: 22  RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V  L+   +  DK+ GL  G DDYI+KPF  EEL+AR+RA++RR+R 
Sbjct: 82  VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         +   D+ ++ DA  V      + L+  E+ ++       N  L++   L
Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   + E  ++D ++  LR+KL     G   I T  G GY LR
Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQH--GPPLIHTQRGFGYALR 246


>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           +++L+++D+  +   ++  L  E + V     G + +++  +  E   +ILD+ +  + G
Sbjct: 4   IKVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R      P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RR+
Sbjct: 64  WQVCREIRETS-KVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRT 122

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G+ A  +I  GD+ ++  A  V++    I L+ KE++++      +   L++E  LN++
Sbjct: 123 LGNTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     + + ID  + KLR KL +      YI+T+WG GY    N
Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLGDRG---EYIKTIWGMGYKFEVN 225


>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D++ L    +L LKS+ +   + + GE  + L +    D I+LD+ +  + G EV
Sbjct: 4   IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +S PV  LS   S  DKV   + GADDY++KPF+ EEL ARI+A +R    +
Sbjct: 64  CREIRSQ-LSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAMN 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             S    +  G L ++ +A   EV+G  I LT KE +++   +   N   T E   + ++
Sbjct: 123 PSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      V+ + V I  LR+K+        YI+TV G GY    
Sbjct: 183 NLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226


>gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 218

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K LA  +   L+   F   +   G +   L +   +DAIILDLGL    G 
Sbjct: 1   MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPV +L+    + +K+ GL +GADDY++KPF   ELVAR+ A+VRR+ 
Sbjct: 61  SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S++  G + +++ A  V  +G  I LT  E++++  L   +   +++   ++H+Y 
Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   ++VFI ++RKK        + IETV G GY + E
Sbjct: 181 QDFDRDSNTVEVFIGRIRKK-----THSDLIETVRGLGYRINE 218


>gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
 gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 130/226 (57%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI-PG 59
           MR+LL+EDD+ + + I   L      V   + G+ G+ L    +FD IILD  L     G
Sbjct: 1   MRVLLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPGGVEG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ LR     TPV +LS ++ +++KV GL++G DDY++KPF+  EL AR+ A+VRR+
Sbjct: 61  LHILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRN 120

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  AQ    +  GDL ++L ++ V   G +I L  +E++++E L       +T+ M L  
Sbjct: 121 RNEAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +P+  +IDV I +LR+K+ +       + T+   GY+L+E
Sbjct: 181 VWDYHFDPQTNVIDVHISRLRQKI-DRPFHHPLVHTIRNAGYMLQE 225


>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
           anthracis CI]
 gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
           biovar anthracis str. CI]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 4   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 64  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 124 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 184 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 227


>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
 gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
          Length = 242

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ +WG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPEFIQNIWGVGYKIED 242


>gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter
           sulfurreducens PCA]
 gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator
           [Geobacter sulfurreducens KN400]
          Length = 223

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+K  A  ++       F       G+DG+ L +   +D IILD+ L    G+
Sbjct: 1   MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR      PV  LS   ++ D+VRGL+ GADDY+ KPF   EL+AR R I+RR  
Sbjct: 61  EVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L       +G  I LT KE+ ++ LL  RK   L++ +    ++ 
Sbjct: 121 SRQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I+DV I +LR+K+ +    +  I TV G GYVL 
Sbjct: 181 INFDSDTNIVDVAIRRLRRKV-DDPFERKLIHTVRGAGYVLE 221


>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 233

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD ALA  I   L+   ++V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLG 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  +TV  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                    + +DV I KLR+K  + AG    I+TVWG+GY+   +  +
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232


>gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1]
 gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V ++  GEDG  L    ++DA ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGQQLKSTLEQTGYAVDLSTDGEDGHFLGSTEDYDACILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLGMWRKEGRDFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S +  G + ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNTSSELTAGGVRLDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ ++RKKL     G   I T+ G GY L + A
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKL-----GAEVITTIRGLGYSLDDPA 220


>gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
 gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
           M]
          Length = 254

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V +   G + I        D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R +   TP   L+   S+ D+V GL +GADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  QILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL ++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 149 HLAPPADESLKVGDLKLDAASREVTRGGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D++I  LRKK+   A  +  I TV G GY+LR 
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DADREPMIHTVRGIGYMLRP 252


>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
 gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
           [Thauera sp. MZ1T]
          Length = 236

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   I   L     +V   +  E    + +    D ++LD  L    G E 
Sbjct: 5   ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGASGVEF 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  +     P+ +L+     +DKV  L+ GADDY++KPF+  ELVARI+A++RR  
Sbjct: 65  ARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRRRA 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G L ++     V      + L   E++++  L        ++   L+ ++
Sbjct: 125 PQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR  L  +A     I+TV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRCALEPSAHDA-LIQTVRGSGYRF 225


>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
 gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
           glutamicum]
 gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
 gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH603]
          Length = 224

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
 gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus MM3]
          Length = 232

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 128/224 (57%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I++G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTIISGPFSLNVIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
           12D]
 gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
 gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ralstonia sp. 5_7_47FAA]
          Length = 237

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 108/232 (46%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL SGADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEM 173
                 ++    L ++     V            + L   E++++  L        ++  
Sbjct: 125 PQLTDDVVAINGLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L+   G  N IETV G GY L  N 
Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAP-GGYSNMIETVRGSGYRLARNP 235


>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 226

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 219


>gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 226

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 3   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 63  QVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 123 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 183 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 223


>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
 gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
           DSM 15981]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L ++ F V     GE+ +++     +   ++LD+ +  + G+
Sbjct: 5   KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  EVLKTIR-KYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G + ++  A  V + G  I L+ KE++++      +   L++E  LN++++
Sbjct: 124 MVSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+        YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG---EYIKTIWGMGYKFE 222


>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
 gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
 gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
 gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
          Length = 240

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSSEETIIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus amyloliquefaciens]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 9   DKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRV 68
           + ++   ++  L+   ++V     GE+ +EL +    D I+LD+ L  + G +V + LR 
Sbjct: 1   EPSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVDGIDVCKQLRQ 60

Query: 69  AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--------- 119
            K+  P+ +L+      DKV GL+ GADDY++KPF+  E+ AR++AI+RR+         
Sbjct: 61  QKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRADISSLSQGR 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I+ G+L +  +      +  ++ LT KE++++  L   K   LT+++ L+ ++
Sbjct: 121 EEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +     + +I+DV I  LR K+ +      YI+T+ G GY L E   +E
Sbjct: 181 NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEEPKMNE 229


>gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
 gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium
           tuberculosis SUMu007]
          Length = 254

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+ AL + +++ L  E ++V V   G++ I        D ++LD+ L D+ G 
Sbjct: 29  IRVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGL 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR +R + + TP   L+   S+ D+V GL SGADDY++KPF+ EELVAR+R ++RRS 
Sbjct: 89  EILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 148

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  ++ V   G  I L+  E++++  L       L++   L+ 
Sbjct: 149 HLERPADEALRVGDLTLDGASREVTRDGTPISLSSTEFELLRFLMRNPRRALSRTEILDR 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++        I+D++I  LRKK+   +  +  I TV G GY+LR  
Sbjct: 209 VWNYDFAGRTSIVDLYISYLRKKI--DSDREPMIHTVRGIGYMLRPP 253


>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K +A  I+  L++E +   VT  G++ I + +   FD +ILDL L D+ G E
Sbjct: 7   RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+     P+ +L+      D++ GL  GADDY++KPF+ +ELVAR+RAI+RR+  
Sbjct: 67  ICKRIRLQS-QVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL V+L       +   + LT  E++++ +         +++  +  
Sbjct: 126 EGLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         + IDV I  LR K+        YI TV+G GY   +
Sbjct: 186 VLGYDYVGYDRTIDVHIKNLRHKIECEYY--KYIVTVYGVGYRFVK 229


>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
          Length = 239

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL ++ +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGSREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 235

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD ++A  +   L  E +N+     GE+G+   + + +D +++DL +  + G E
Sbjct: 4   HILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R    + P+ I+S   S  DK  GL  GADDY++KPF+  E+ ARI++ +RRS  
Sbjct: 64  VIRQIRTRS-AVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A+           ++  G+L ++ D  TV   G+ I LT KE  +++L +   N   TK
Sbjct: 123 YARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTK 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++      +  +I+V I +LR+K+        +I+T+WG GY   
Sbjct: 183 AQLYGFIWKDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGYKWE 233


>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A  +   L ++ + V     G +G+E  K   +D +I+D+ L  + G+ 
Sbjct: 4   RLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMDGYS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + +++R      P+ I+S  +   DK++GL+ GADDY++KPF+  E+ ARI +++RR   
Sbjct: 64  LCQSIRWVS-DVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +     G LS+N + K   +    ++LT  E+ ++ +L+       TK+   
Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            H++   D      I V I +LR KL   +    +IET WG GY  
Sbjct: 183 EHIWHEEDIESSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGYRF 228


>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDYI+KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 230

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K +   IE+ L++ENF V+     +D + L K   FD  I+D+ L D  GFE
Sbjct: 4   KILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPDGNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K + P+ +L+  +   D+V GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  LCKLIRE-KYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQH 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +    ++   L +N  +    + G  I LT  E+ ++ LL   +    + +   
Sbjct: 123 YDGKENNTSETLMVMGLFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADELF 182

Query: 176 NHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++  +     +  + V I  +R+KL +      +++TVWG GY++ 
Sbjct: 183 QQIWGEKYFKNSRNTVMVQIRHIREKLYDTGNKPKFVKTVWGVGYIIE 230


>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
          Length = 231

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 4   KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 64  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S +    L +N+      + G  + LT  E+ ++ ++       ++ E 
Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++           I V I  LR+KL++ +    YI+T+WG GY +
Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231


>gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 262

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +LK E F  +     G DGI+ CK    D ++LD+ + DI GF
Sbjct: 32  KILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVMMPDIDGF 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R      P+  LS  S   DK+  L  GADDY++KPF+ +E+  RI+A +RR+ 
Sbjct: 92  DVCKRIREFSF-VPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  GD+ ++     V   G  I LT KEY ++  ++   N  LTK+M 
Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N ++D   E     I V + KLR+KL        YI TV G GY LR
Sbjct: 211 CNEVWDDDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKLR 258


>gi|126650075|ref|ZP_01722308.1| DNA-binding response regulator [Bacillus sp. B14905]
 gi|126593247|gb|EAZ87209.1| DNA-binding response regulator [Bacillus sp. B14905]
          Length = 235

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+  +A+ I+  L    F+ ++   G + I   +    D +ILDL L D 
Sbjct: 1   MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+ R +R    +  + ILS   S  DKV GL  GADDY++KPF+  ELVARI A +R
Sbjct: 61  DGIEICRKIRE-HSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLR 119

Query: 118 RSRGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R     Q        +   ++ +N            I L+ KE++++  L+  +N   +K
Sbjct: 120 RQDRWLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSK 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L+ ++      +   I V+I ++R+K+        Y++TVWG GY  
Sbjct: 180 SQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229


>gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 128/228 (56%), Gaps = 7/228 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPGFE 61
           +++ED+ A+   + L LK E + V   + GE  IEL      D    ILD+ L  I GFE
Sbjct: 1   MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNAN-PDIKVAILDVMLPGIDGFE 59

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR       V +L+  +  +DKV GL+ GADDYISKPF+  ELVARIR+++RR   
Sbjct: 60  VLKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRRLTS 119

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     Q ++ +G  ++NL  +        I LT KE++++EL       +L+++  LN 
Sbjct: 120 NHIEEKQDVLKSGPFTLNLSDRKFYKGDEEIELTPKEFEILELFLKNAKKSLSRDQILNE 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      ++K++DV + ++RKK+ +      +++TVWG GY   E+ 
Sbjct: 180 IWGKNYFGDLKVVDVNMRRIRKKIEDDPAEPRFLKTVWGYGYRWEEDG 227


>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
          Length = 232

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ +DD  +  S+ L   +E F       G + IE       D I+LD+ + ++ G +
Sbjct: 6   HILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMPEMNGVD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R    + P+ +L+  S   DKV  L+ GADDYI+KPF+  E+VARI+A++RR   
Sbjct: 66  VCREIRRMS-NVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRRITE 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +   +   DL +      V+V+G  +  T KE++++ +L+      +++E  +  +
Sbjct: 125 TPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISREDIMQKI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +++ ID  + ++R+K+ N    K  + TV+G GY   
Sbjct: 185 WGYNYEGDLRTIDTHVKRIRQKI-NVDNAKWALSTVYGLGYKFE 227


>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
 gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens AM1]
 gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens DM4]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++L   +   L++E F V V   G++          D ++LD  +  + G E+
Sbjct: 6   ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 66  CRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRAK 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H   ++V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ ++
Sbjct: 126 PTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 186 GHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 228


>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
 gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
          Length = 243

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 120/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ + + +      ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 67  VCQELRKES-DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S       +I  G L ++ + + V     R+ LTG E+ ++ELL  +     ++   
Sbjct: 126 ITTSLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235


>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
 gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 243

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  L   +   L  + F V     G+   +L     +  I+LDL +    G  
Sbjct: 9   HILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR     TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 69  ICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQGS 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I   ++ V+L A+T++       LT  E+ ++++L       L+++  
Sbjct: 129 KPPGAPEDEPETITFSNIEVDLAARTLKRGEELQALTTGEFAVLKVLLQHPRQPLSRDKL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++        P  + IDV + +LRK +        Y++TVWG GYV   + 
Sbjct: 189 MSLARGREQGPFDRAIDVQVSRLRKLIETDPAQPRYLQTVWGFGYVFVPDG 239


>gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541]
 gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541]
          Length = 235

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 116/234 (49%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  +A      L++  F V ++  G++G       E+  I+LD+ L    GF 
Sbjct: 3   KILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + RA+R   +  P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRAVRRE-LDIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A S++  G L +      V V GH + L  +E++++  L+       +KE   
Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + ++D      V  + V + +LR+K+        +++TVWG GY     A ++ 
Sbjct: 182 DRVWDLDAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFNSEALEDA 235


>gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
 gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K L   I   L  E + V     G+D ++     E+DAI+ D+ L  I GF
Sbjct: 1   MRILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+LR +R   I TPV +L+    IED+V+GL  GADDY+ KPF  +EL+AR+R ++RR  
Sbjct: 61  EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +  +A ++    +L+VN ++  V      I L+ +E+ ++E +   K   L++E    
Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           H+++   E    +IDV+I  LR+K+         I T+ G GYVL+
Sbjct: 181 HIWNYDYEGGTNVIDVYIRYLRRKIDKDF-EPKLIHTIRGVGYVLK 225


>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +A  I L L  E F+  +   GE+ +     Y  + ++LDL L  I G++
Sbjct: 6   KILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLPGIDGYQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +LS    + DKV GL+ GADDY+ KPF+ +ELVAR++A++RR + 
Sbjct: 66  VCREIRA-KSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    + +NL   +V   G  + +  KE +++  L+   N   T+E 
Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+ ++      + + +DV I +LR+K      G + +E+    GY ++   +
Sbjct: 185 LLDQIWGYEYIGDTRTVDVHIKRLREK----NQGPSDMESRHRVGYRVQVRGE 233


>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 246

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   + ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSSEQ 236


>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           EO147]
 gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
           C6786]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F     + G  G+   +  ++D IILD+ L    G+
Sbjct: 1   MRILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVMLPGHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  + STPV  L+    + D+V+GL+ GADDY+ KPF+  ELVAR+R+I+RR +
Sbjct: 61  TVLERLRRER-STPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DL ++L  +    QG  + LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 ARESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDAAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
 gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
          Length = 243

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    + V     GE+ + + +      ++LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR+  
Sbjct: 67  VCQELRKES-DVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I  G L ++ + + V     R+ LTG E+ ++ELL  +     ++   
Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185

Query: 175 LNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL +     + I T  G GY+ +
Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLFQ 235


>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 223

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +   +    K E F V+  + G +G+E+ K    + +ILD+ +  + G+
Sbjct: 1   MNILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R      P+ +L+  S  EDK+ G + GADDY++KPF+ + LVA+++A+++RS 
Sbjct: 61  KVCKNIRELS-KVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSI 119

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++I    L +N  +  V++ G  I L+ KEY ++      K+  L+++  L+ 
Sbjct: 120 IDINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDR 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +  ++ +D  I +LR+KL N A   +YI TV G+GY    N
Sbjct: 180 VWGFDYDGGLRTVDTHIKRLREKLKNKA---DYIVTVRGKGYKFEVN 223


>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +       ILD+ L  + G+E
Sbjct: 7   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSGYE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ R+R+++RR   
Sbjct: 67  VCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVNF 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +  I  G  +++L AK+       I +T  E+ +++     K   +T++  
Sbjct: 127 SQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+ +      YIETVWG GY  +
Sbjct: 187 MTKTWGENYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYRWK 234


>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  L   +   L++E FNV+    G +G+ + +  + D I+LD+ + ++ G + 
Sbjct: 5   ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +RA    +  TP+ +L+      DK+ GL+ GADDYI+KPFN  E++AR+RA++RRS   
Sbjct: 65  MRAW-NKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKA 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++ +   A T+ V    + LT  E++++  L        ++   L+    
Sbjct: 124 QPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E   + IDV I  LR K+        YIETV+G GY      + E
Sbjct: 184 QAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFARPKRPE 231


>gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   +N  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKPHSISFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 225

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L    + V     G + +++  +  +   IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+      D+++G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  QVCREVR-MHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTN 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++  G +SV+  A  V++ G  I L+ KE++++      +   L++E  LN+++
Sbjct: 124 VFAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +      YI+T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG---EYIKTIWGMGYKFE 223


>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+++ F V     GE  ++L +    D ++LD+ L  I G E
Sbjct: 3   KVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR    +  V +++  +   DK+ GL  GADDY++KPF+  E+ AR++A++RR RG
Sbjct: 63  VLRRLRAVSDAY-VILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRG 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++    LS++L  + V   G  + L+  E+ ++  L+       ++   L  +
Sbjct: 122 GRTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDLLAALAGAPGRVFSRAQLLERV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      + +++DV I  LR +L + A     I TV G GY    + +
Sbjct: 182 WGYDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKFVGSPR 229


>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 246

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 121/234 (51%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR        P+ +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   + ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSTEQ 236


>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   ++  L+ E F ++  D GE  +E  K +  D ++LDL L  I G EV
Sbjct: 6   ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGIDGLEV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+      + P+ +L+      D VRGL+ GADDY++KPF+   ++AR+RA++RR+ 
Sbjct: 66  ARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRRNA 125

Query: 121 GHAQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 I       + ++   + V V G +I LT  E+ ++  L+ R     T+   ++ 
Sbjct: 126 AEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIVSA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         + +DV I  LRKKL  +      IETV G GY L+E
Sbjct: 186 VRGEGFAVTDRSVDVQIVGLRKKLGASG---KVIETVRGVGYRLKE 228


>gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 234

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD+ LA   +  L+     V ++  GE G++    + FDAI+LDL L    G 
Sbjct: 6   INILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPARDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R      P+ +++      D+V GL+ GADDY+ KPF+  EL+ARIRA+VRR+R
Sbjct: 66  SVCQRIRE-HSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRAR 124

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G A    S++V GDL ++  A T  + G  + LT  E+ +++ L+ R    L++E  +  
Sbjct: 125 GQAGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMEL 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                +E   + IDV I +LR+K+ +       I TV G GY
Sbjct: 185 AKGNAEEAFDRSIDVHISRLRQKIGDDPRHPTRIRTVRGAGY 226


>gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 265

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E+F   VT  G D I + +  + D +ILD+GL  I G E
Sbjct: 33  RALVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGLPGIDGLE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 93  VCRQLRTFSDAY-VVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRI 151

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G L +++ A+ V +    I LT  E+ ++E LS R    L++
Sbjct: 152 QQSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSR 211

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + DG       ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 212 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGYRM 261


>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
          Length = 248

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++ +A  +E+ LK+EN+ VY      D +   +  + D  ILD+ L D+ GF 
Sbjct: 21  KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+      DK+ GL  GADDY++KPF   E+VAR++A +RR + 
Sbjct: 81  LCQLIR-KKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++         S +    L +N+      + G  + LT  E+ ++ +L       ++ E 
Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++           I V I  LR+KL++ +    YI+T+WG GY +
Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248


>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 233

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+K +A  +E+ L S+ + V+     ++ + + K  E   ++LD+ +  + G 
Sbjct: 4   INVLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ R +R +  + P+ +LS  S+  DK+ GL  GADDY++KPFN  EL AR+++ +RR  
Sbjct: 64  ELCRKIRESS-NIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYT 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +   A S I   ++++N D   V ++G  + LT  E++++ LL+       + +
Sbjct: 123 QLNPNSTNEFAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 EIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDQRENKIITTVWGVGYKIEK 233


>gi|228919942|ref|ZP_04083297.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839758|gb|EEM85044.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 236

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 8   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVMLPGQSGFD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 68  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 126

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 127 QTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 186

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 187 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 234


>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 221

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD A+   + + L+ E   V     G + ++L    + D +ILDL L  + G++
Sbjct: 3   RVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL--PQADVVILDLMLPQLTGWQ 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+      ++++GL+ GADDY++KPF+  E+VAR+RA++RRS  
Sbjct: 61  VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRSGF 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V GDL +    +    +G  ++L+  E+ ++  L+       ++E  L  ++  
Sbjct: 121 KQE--LVFGDLILRPRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVWGS 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +++DV +  LRKKL   A    YIETV G GY  R
Sbjct: 179 DFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRFR 219


>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 243

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK   +    G          IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241


>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
 gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR    +   P+ +L+  S  +DKV GL++GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 ++    L ++     V  + +    ++ L   E++++  L        ++   L
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGEDNAGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LR  L    G  N IETV G GY L
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAAL-TPGGYSNMIETVRGSGYRL 229


>gi|320532177|ref|ZP_08033046.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135603|gb|EFW27682.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 238

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +D+  L+ +++  L+    +      G   ++L +    D ++LDLGL  + G EV R L
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEVCRQL 75

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG----- 121
           R       V +L+  +   DK+ GL  GADDY++KPF+  ELVARI+ ++RR R      
Sbjct: 76  RTFS-DCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTGA 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +   G L+++  ++ VE+    + LT  E+ +++ L+      L +    + ++  
Sbjct: 135 TAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWGE 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++DV I  LRKKL +      +++TV G GY +
Sbjct: 195 DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
           [Xenorhabdus nematophila ATCC 19061]
 gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  I        D ++LD  L    G +
Sbjct: 4   RILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +++ ++    +   PV +++  +  ED+VRGL  GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+ +I    L ++  +  V  QG  +++   E++++           ++E  L+++
Sbjct: 124 SPMEAEEVINMDGLILDPSSHRVSSQGLDLNMGPTEFKLLHFFMTHPERVYSREQLLDYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGKHDKMVQTVRGTGYRF 225


>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
 gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
          Length = 231

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  + + V     G + ++   +  +   IILD+ +  + G+
Sbjct: 11  KILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPKMDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR++
Sbjct: 71  QVCREIR-MHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQ 129

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   +  I  G + V+  A TV   G  + L+ KE++++      +   L++E  LN+++
Sbjct: 130 GSGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +      YI+T+WG GY   
Sbjct: 190 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIKTIWGMGYKFE 229


>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 223

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ +A  +   L    +  ++   G +G+ L + +  D +ILD+ L ++ G+
Sbjct: 1   MNILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ LR      PV  L+   S+ D+V+GL+ GADDY+ KPF+  EL+AR++ ++RRS 
Sbjct: 61  QVIQTLRQFS-EVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L ++L    V    + I LT KEY ++  L+  +   +T+    + +++
Sbjct: 120 AKVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV + +LR K+ + A     I T+ G GY L  N
Sbjct: 180 INFDTDTNVVDVAVRRLRAKI-DDAYQPKLIHTIRGMGYKLDTN 222


>gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 219

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ LA  I+  L  +   V     GE  +   K  +F  +ILDLGL DI G 
Sbjct: 1   MRILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV ILS    ++D+V+GL +GADDY+ KPF+  EL AR+RA+ RR  
Sbjct: 61  TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A   I   ++ +   +  V      + L+ +EY ++  L+  +   L+K+     +Y 
Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+     ++V I  LRKKL       + I+TV G GY++ + 
Sbjct: 181 WSDDVSSNTMEVHIHNLRKKL-----NPDLIKTVRGMGYMIEKE 219


>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
 gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 219

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 91/220 (41%), Positives = 130/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  + + V +   GE G+E     +FD IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRA++RR    
Sbjct: 64  CRRVRQVQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQPH- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + +++DA  V V G ++  T  EY ++ LL+  +N  L +E  LNH++   
Sbjct: 122 -KDIIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      +  IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKP-FNKEKVIETVRGVGYVIR 219


>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 228

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   I   L+ + F++   + G + +   +    D ++LD+ + D+ GF
Sbjct: 5   MHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPDMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  L+  S  ED+++GL+ GADDYI KPF+  EL ARI   +RR R
Sbjct: 65  EVCQRIRQTS-QIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIR 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +  +S I  GD+ ++ D + V +    I+LT +E+ ++  L L +    ++E     L
Sbjct: 124 GLSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKL 183

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++        + +D  I  LR KL    G + +I+TVWG GY   E 
Sbjct: 184 WESHSTSGSLRTVDTHIKTLRLKLK---GAERHIKTVWGVGYKFEEE 227


>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
 gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LD+ L  + G E
Sbjct: 6   RVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQ+       +    L+++  A+   + G R+ LT +E+ ++   + +     ++   L
Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  +
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKFAEAGE 236


>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 258

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 24  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 84  TRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 143

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 144 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 203

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK   +    G          IET  G GY++RE 
Sbjct: 204 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 256


>gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 EDL933]
 gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. Sakai]
 gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli
           CFT073]
 gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046]
 gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. W3110]
 gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89]
 gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536]
 gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC
           O1]
 gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS]
 gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC
           8739]
 gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli
           SMS-3-5]
 gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11]
 gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ATCC 35469]
 gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88]
 gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a]
 gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989]
 gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39]
 gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli
           UMN026]
 gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp.
           4_1_40B]
 gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O157:H7 str. FRIK966]
 gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185]
 gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302]
 gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736]
 gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR
 gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR
 gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli]
 gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073]
 gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli]
 gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. MG1655]
 gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K12 substr. W3110]
 gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
 gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli
           UTI89]
 gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator
           protein [Escherichia coli 536]
 gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS]
 gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli str. K-12 substr. DH10B]
 gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5]
 gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4196]
 gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4113]
 gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638]
 gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4076]
 gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4401]
 gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4486]
 gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC869]
 gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC508]
 gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11]
 gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22]
 gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019]
 gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171]
 gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012]
 gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. EC4115]
 gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11]
 gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7
           str. TW14588]
 gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli 55989]
 gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia fergusonii ATCC 35469]
 gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli S88]
 gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI39]
 gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli ED1a]
 gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli UMN026]
 gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82]
 gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA]
 gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972]
 gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BW2952]
 gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O157:H7 str. TW14359]
 gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O26:H11 str. 11368]
 gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O103:H2 str. 12009]
 gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15]
 gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042]
 gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli O55:H7 str. CB9615]
 gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli FVEC1412]
 gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185]
 gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli B354]
 gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034]
 gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302]
 gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101]
 gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU
           83972]
 gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146]
 gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli DH1]
 gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431]
 gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR
           [Shigella boydii ATCC 9905]
 gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. EC1212]
 gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli WV_060327]
 gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. G5101]
 gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. 493-89]
 gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G]
 gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520]
 gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482]
 gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252]
 gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263]
 gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863]
 gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007]
 gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
 gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253]
 gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167]
 gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii
           ECD227]
 gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1044]
 gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli O157:H7 str. 1125]
 gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR
           [Escherichia coli AA86]
 gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736]
 gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605]
 gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718]
 gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206]
 gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143]
 gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280]
 gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299]
 gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
 gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
 gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
           flexneri VA-6]
          Length = 229

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRF 225


>gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 247

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 24/248 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+ A+  S+E  L+ E + V     G + ++       D ++LD+ +  + G 
Sbjct: 1   MRVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR      PV +L+    + D+V GL  GADDY+ KPF  EEL AR+RA+ RR+ 
Sbjct: 61  EACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALTRRAS 120

Query: 121 -----------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQM 157
                                       ++   D+ ++  ++ V      + LT  E+ +
Sbjct: 121 LSARAASAAAVAAGGSADSAGPGPGRPQVLTFSDVRLDPGSRQVTRGDRELTLTKTEFDL 180

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +EL    +   L++   +  ++     P    ++VF+  LR+KL  A G    + TV G 
Sbjct: 181 LELFLAHQRQVLSRSTIMERVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGV 239

Query: 218 GYVLRENA 225
           GYVLRE A
Sbjct: 240 GYVLRETA 247


>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
 gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
           [Mycobacterium smegmatis str. MC2 155]
          Length = 246

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 23  VLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 83  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHT 142

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q    +  G ++++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 143 EQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  + DVFI  LR+KL    G    I TV G GYVLRE  
Sbjct: 203 YDFDVDTNVADVFISYLRRKLERD-GVPRVIHTVRGIGYVLREEP 246


>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
 gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
 gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
 gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
           HL103PA1]
          Length = 226

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E+      D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLRQRG-NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++++   V V+G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR K+ +       I TV G GY  +
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKFQ 225


>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 230

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD   A  I   L+   +       G DG+        D  ++D+ L  + GF
Sbjct: 1   MKILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR A I  PV +LS  SS++DK+R LQ+G DDY+ KPF+  EL+ARI+A++RR+ 
Sbjct: 61  TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ S +  GDLS++L ++ V     RI +   E+ ++E L+      ++K M + H++
Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +P+  I++  +C+LR+KL +    +  + TV G GYVL   A
Sbjct: 181 EYNFDPQTNIVETRMCRLREKL-DKPFKEKLLHTVRGFGYVLEPEA 225


>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
 gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
 gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 219

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 131/220 (59%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +EL L  +N++V +   G+ G++      +D IILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + STP+ I++  S   DKV GL  GADDYI KPF  EEL ARIRA++RR    
Sbjct: 64  CRRVRQEQ-STPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR--QP 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I    + +++DA  V + G ++  T  EY ++ LL+  +N  L +E  L+H++   
Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPYGKDKT-IETVRGVGYVIR 219


>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
 gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 243

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK   +    G          IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241


>gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
 gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
           903]
          Length = 224

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L  SI  +LK++ ++V     G++ ++  +  ++D II D+ +  + G 
Sbjct: 1   MKVLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  LR  +I TPV +L+   S+EDKV GL +GADDY+ KPF  +EL+ARIR ++RR +
Sbjct: 61  GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  +L+  GD S++L  KT++ +G  + LT KEY+++E L    N  L++E    H++
Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     E  IIDV +  +RKKL    G  + I+T  G GYV +
Sbjct: 181 DFDYVGESNIIDVLVKNIRKKL----GNPSIIQTKRGMGYVFK 219


>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
          Length = 248

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G E
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R  + + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS  
Sbjct: 78  VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ +
Sbjct: 138 SEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPAA 242


>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 222

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TPV IL+      D V GL +GADDY++KPF   EL+AR+RA++RR +  
Sbjct: 64  ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGQSE 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                V   + ++ D++   +    +HLT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 124 TP---VVQGVRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                K +D+ I  LR+KL + A    YI TV G G+    +
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGFRFERD 222


>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 248

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKE 129

Query: 123 AQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + I         DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 HAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
           sp. ORS278]
 gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GD+ ++ + + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
          Length = 239

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 220

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL SGADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    + ++   + V      + LT KEYQ++  L       +T+E  +  LY 
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   ++V I  LRKK          I T+ G GY++ E +
Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGVGYLVEERS 220


>gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 241

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +     V     G+ G  L     +DA+++D  L    G 
Sbjct: 17  MKILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRMLPKRDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  ++D+V GL++G DDY++KP+   EL+ARI  + RR  
Sbjct: 77  SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    GDL ++  +  V   G  I L  +EY+++E L       +T+ M L H++
Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+    G    ++TV G GY+++
Sbjct: 197 DYHFDPQTNVIDVHISRLRSKIEKDFGEP-LLKTVRGAGYMMK 238


>gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator
           [Rhodoferax ferrireducens T118]
 gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F V +   G DG+      ++D  ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  +R A    PV  LS    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  AVLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +   +   DL ++L  + V   G RI LT KE+ ++ELL  R++  L + +  + ++
Sbjct: 121 KGSSTEFLRAADLELDLLRRRVTRAGKRIDLTSKEFALLELLLRRQDEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V + +LR K+ +       I TV G GYVL   A
Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKVDDNF-EPKLIRTVRGMGYVLESPA 225


>gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 226

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 130/226 (57%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D++ +   ++  L+   F+V V+      IEL    + D ++LD  L  I G 
Sbjct: 1   MKILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGI 60

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           ++L+ +R  +     PV +L+  +  +DK++GL  GADDYI+KPF+ +EL+ARI  ++RR
Sbjct: 61  DILKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRR 120

Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R    +Q +I  G++ +N D   + V G ++ LT KE+++++LL   +   L ++  L 
Sbjct: 121 YRISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E + +DV I  LRKKL      +N I+T+ G GY ++
Sbjct: 181 KVWGYEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKMK 226


>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 232

 Score =  269 bits (688), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +   L+ E+F V  T  GE+ I L +    D ++LD  +  + G E
Sbjct: 5   RVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++  +  V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E + +DV I +LRK + N A   + I TV   GY L
Sbjct: 185 WGRDSDIEPRTVDVHIRRLRKAI-NLADAPDLIRTVRSAGYAL 226


>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
 gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter lacuscaerulensis ITI-1157]
          Length = 228

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ +    I   L++E F V   + G++ +   K    D I+LD  L  + G E+
Sbjct: 7   ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIEI 66

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+   A  + PV +LS  S   DKVRGL++GADDY++KP++  EL+AR+++  RR+R
Sbjct: 67  CRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRRTR 126

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V   G  I L   E++++     +      +E  L+ ++
Sbjct: 127 PAAVGERLEYDDIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDRVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + I TV G GY L
Sbjct: 187 GRDIYVDTRTVDVHIGRLRKAL-TVRGGDDPIRTVRGAGYAL 227


>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ A+A   +  L+   F V   + G  G++     +FD  ILDL L  I GFE
Sbjct: 3   KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228


>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD A+   +   LK+E   V     G    E       D  ILD  L  + G ++
Sbjct: 4   ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQLPRA--DLAILDWMLPGVSGVDL 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R  R + ++ P+ +L+     EDK+RGL  G DDY+ KPF+  E+VAR+RA++RR    
Sbjct: 62  AREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRV--G 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I  GDL ++L   +  + G R+ L+  E+ ++  L+        +E  L  ++   
Sbjct: 120 VQEEIAVGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWGSD 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +++DV I  LRKKL + +    +IETV G GY  RE 
Sbjct: 180 FPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRFREE 221


>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 222

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 228

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G +GIE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
 gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
 gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 233

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +E+ L ++ ++VY    G + ++  K  + D  ILD+ L DI GF 
Sbjct: 4   KILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIMLPDIDGFR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   
Sbjct: 64  LCQKIREKFY-FPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYQS 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S+   +       L +N  +    + G  I LT  E+ ++  L   +   +  E
Sbjct: 123 YNSPNLSQSEEKDEYDIRGLLINRVSHKCYLYGKEIALTPLEFSILWYLCEHQGKVVASE 182

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                ++  +        +   I +LR+KL+  +    +I+TVWG GY
Sbjct: 183 ELFEAVWKEKYLRNSNNTVMAHIGRLREKLNEPSKNPKFIKTVWGVGY 230


>gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 234

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +          G  +++ D+  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +EL L  E + V     G  G+E+ +   FD IILD+ L  + G E
Sbjct: 5   KILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYMNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+    + DKV GL  GA+DYI+KPF  EEL+ARIR+ ++    
Sbjct: 65  VLRKIR-HNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKNH 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  + +G L +++D   V      + LT KE+ ++       +  LT++  L  ++
Sbjct: 124 GISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV+I  LR K+ +    K  I T+ G GY+L+
Sbjct: 184 GYDYMGDTNIVDVYIRYLRSKI-DDKYNKKIIYTIRGVGYLLK 225


>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ +     FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL    G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220


>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
 gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  ++  L    ++      G+  ++  +    D I+LD+ L  + G+E+
Sbjct: 18  ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRRS-- 119
            R LR      PV +L+  +  ED++RGL+ GADDYI K PF+  E+VAR+++++RR+  
Sbjct: 78  CRQLRTFS-DVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNAL 136

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +           L ++       V+G  ++LT  E ++++  +       ++E  LNHL
Sbjct: 137 VQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNHL 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D       + +D  I  LR+KL     G N I+ V+G GY   
Sbjct: 197 HDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240


>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 239

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIR ++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 132/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  A ++   L +E F   V   G +G+     + +D ++LD+ L ++ G+
Sbjct: 1   MRLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A+  TPV +L+      D+      GADDY+SKPF+   L+AR+RA++RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+TV     RI LT +E+ ++E L  R    L+K   L+H++D
Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +++V+I  LR+K+ +A  G + IETV G GY L +
Sbjct: 181 AHYDGDENVVEVYIGYLRRKI-DAPFGTHTIETVRGVGYRLVD 222


>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 234

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+   F V     G + +   +    D I+LD+ L D+ GFE
Sbjct: 9   RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR     TPV  L+   + EDKVRGL  G DDY++KPF+ +E++ARIRA++RR+ G
Sbjct: 69  IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAG 128

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+ ++ ++  V   G  I L+  E++++  L L     L+K   L+H+
Sbjct: 129 DPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +         I++ ++  LR+K+         I T+ G GYV+R
Sbjct: 189 W--DHVRGEGIVESYVSALRRKIDKD--RPRLIHTIRGVGYVMR 228


>gi|257867576|ref|ZP_05647229.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257873905|ref|ZP_05653558.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257877663|ref|ZP_05657316.1| response regulator [Enterococcus casseliflavus EC20]
 gi|257801632|gb|EEV30562.1| response regulator [Enterococcus casseliflavus EC30]
 gi|257808069|gb|EEV36891.1| response regulator [Enterococcus casseliflavus EC10]
 gi|257811829|gb|EEV40649.1| response regulator [Enterococcus casseliflavus EC20]
          Length = 240

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G+E        +D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEAAFKYDGKEGLEAFAAEPDKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 64  GMMVAREIRKISSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 123

Query: 119 SRGHAQSLIVTGD---------LSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           S    ++     D           +N   +   + G  I  LT KE+ ++  L+ +    
Sbjct: 124 SELVEKTTPEASDATFDVVTDHFKMNTKTREAYLNGKPIDGLTPKEFDLLYTLAKKPRQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 184 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 236


>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
 gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
           12042]
          Length = 224

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I    + E F V     G + ++      +D I++D+ + ++ GF 
Sbjct: 3   KILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIMMPNLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
             R +R    + PV +LS +    DK+ G   G DDY+ KPF+ +EL+ RI AI++R S+
Sbjct: 63  ACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTSQ 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + LI   DL+++   + V+++  +++L+ KEY ++  L   +   LT+E  L +++ 
Sbjct: 123 SEKKELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +D  I  LRK L   +    YI T+ G GY   
Sbjct: 183 YDFFGDERTLDTHIKLLRKNLREYS---RYITTLRGVGYRFE 221


>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 248

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ +E       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR   
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + ++  G L V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
 gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
          Length = 230

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 132/226 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L+  +   LK   + V     GE+ +EL +  E+D IILDL L  + G 
Sbjct: 1   MKLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +RV      + ILS  S+I DK+ GL  GA+DY+ KPF+ +EL ARIR ++RR+ 
Sbjct: 61  EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    ++++   K V V G  I +T KEY ++E L L++N  ++ E  + H++D
Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     +   I  LRKK+++  G K  I+TV G+GY++ E+ K
Sbjct: 181 SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMITESDK 226


>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Frankia alni ACN14a]
 gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Frankia alni ACN14a]
          Length = 240

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G   ++L      D +ILD+ L D+ GFE
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    S PV  L+   +  DK+ GL  G DDY++KPF  +ELVAR+RA++RR+  
Sbjct: 66  VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +   D+ ++ D   V   G  I L+  E+ ++       N  L++  
Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E  ++D ++  LR+KL     G + I T  G GY LR  A
Sbjct: 186 ILDAVWSYDFAGEPTVVDQYVSYLRRKLGRH--GPSLIHTQRGFGYALRLPA 235


>gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
 gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
          Length = 235

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 85/238 (35%), Positives = 125/238 (52%), Gaps = 18/238 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC----------KFYEFDAIIL 50
           MR+LL+EDD  +  S++L L+ E F V     GE G+             +   +D I+L
Sbjct: 1   MRVLLVEDDAMIGDSVKLALRQEGFAVDWVQDGEAGLAAGTPTGGSGGADEGACYDLILL 60

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G +VLRALR   +STPV IL+   +I D+V GL +GADDY+ KPF+ +EL A
Sbjct: 61  DLGLPRRSGLDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A+ RR+ G A+ ++  G +S+N   + V + G  +HL+ +E+ ++  L  R     +
Sbjct: 121 RMHALARRAEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225
                  LY   DE     ++V+I  LRKK   A      I  + G GY    L E  
Sbjct: 181 VAQLQERLYSWDDEVGSNTVEVYIHALRKKFGAA-----LIRNIRGVGYVMPRLEEGP 233


>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
 gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
 gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
 gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
 gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
 gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  +AG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SAGHDKLIQTVRGAGYRFSTKA 229


>gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 237

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 171/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLDA++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLN+LY 
Sbjct: 121 GHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 242

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A SI     +E + V +   G  G+E  K Y  D I+LD+ L  I G E
Sbjct: 11  RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70

Query: 62  VLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R ++       P+ +L+      D + GL  GADDY++KPF+  EL+AR++A++RR  
Sbjct: 71  VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        A+  +  GDL ++   + V   G   HLT  E+ ++  L+    T L
Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           T+E  L  ++D  D    + +D  +  LR+KL         I TV G GY L    
Sbjct: 191 TREQLLEEVWDWVDASGTRTVDSHVKALRRKLGAD-----LIRTVHGVGYSLEPPP 241


>gi|217958697|ref|YP_002337245.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137906|ref|ZP_04266505.1| Response regulator [Bacillus cereus BDRD-ST26]
 gi|217067863|gb|ACJ82113.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228645563|gb|EEL01796.1| Response regulator [Bacillus cereus BDRD-ST26]
          Length = 234

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIR-KKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
 gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C]
 gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU
           85-389]
          Length = 237

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 133/223 (59%), Positives = 170/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDEPEMANLIELTLASEGIVCDKVSVGLEGLRLGKLGRYDLMILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VE+ G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGGK+YI+TVWGRGY+L+E
Sbjct: 181 SLDEPEMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYMLKE 223


>gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 222

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  IE  L+S+ F   V         +     FD +ILDLGL    G +
Sbjct: 3   RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV IL+    I+DKV G ++GADDY++KPF  EEL+ R++A +R+S G
Sbjct: 63  VLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGG 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I +G + ++L ++ V++    I L  +E+ + E         L++E  L+ +
Sbjct: 123 SQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LRKKL N       IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGND-----LIETVRGMGYRLR 221


>gi|320093788|ref|ZP_08025635.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319979289|gb|EFW10785.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 238

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 6/220 (2%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +D+  L+ +++  L+    +      G   ++L +    D ++LDLGL  + G EV R L
Sbjct: 16  DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEVCRQL 75

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG----- 121
           R       V +L+  +   DK+ GL  GADDY++KPF+  ELVARI+ ++RR R      
Sbjct: 76  RTFS-DCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTGA 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +   G L+++  ++ VE+    + LT  E+ +++ L+      L +    + ++  
Sbjct: 135 TAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWGE 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++DV I  LRKKL +      +++TV G GY +
Sbjct: 195 DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234


>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ ++A      L+   F V ++  G++G+E     ++D ++LDL L  + G+E
Sbjct: 3   KVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R  K   P+ ++S   +  DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRRIRATK-EIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   +L ++  ++ V   G    LT KE+ ++  L+   N    KE   
Sbjct: 122 LAGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I  +R+K+   +    +IET+WG GY  R
Sbjct: 182 KEVWGLESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRFR 228


>gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
 gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
          Length = 240

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  GD  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETVIEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
 gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudovibrio sp. JE062]
          Length = 231

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  +   L++E +NV V   G++   L +  + D ++LD  L  + G E
Sbjct: 3   KILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI RR+
Sbjct: 63  LCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRRA 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++ +GD+ ++ +   V   G  IHL   E++++E L        ++E  L+ +
Sbjct: 123 LPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDGV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N    K+ I TV G GY   + 
Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAI-NKGRMKDPIRTVRGAGYAFNDQ 227


>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
 gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
          Length = 260

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     D  +  I        D ++LD  +    G +
Sbjct: 35  RILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 94

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        PV +L+     ED+V+GL+ GADDY+ KPF+ +ELVAR++AI+RR 
Sbjct: 95  VIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILRRI 154

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    L+++  +  V      I +   EY+++           ++E  LN++
Sbjct: 155 SPMATEDIIEMNGLTLDPTSHRVSSNDTPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 214

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A G    ++TV G GY  
Sbjct: 215 WGANVYVEDRTVDVHIRRLRKALE-AEGHDKMVQTVRGTGYRF 256


>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
 gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+ ++A      L+  +F V +   G +G+E     E+  I+LDL L D+ GFE
Sbjct: 3   KILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K   P+ +++   +  DK+RGL  G DDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICRQIREKK-DIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++   + V V       T KE+ ++  L+   N   +K+   
Sbjct: 122 LVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +++     ++  + V I K+R+K+        YIETVWG GY  R
Sbjct: 182 SKIWNMDSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRFR 228


>gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 132/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ L+IEDD  +A  +   L+  +F V   D G+ G+ +    E+D +I+D  L  + G 
Sbjct: 1   MKALVIEDDHDVASYLVKGLRESDFVVDHADDGKKGMLMAASEEYDIMIVDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      P+ ILS +  ++D+V GL+ G DDY++KPF+  EL+ARI +++RR+R
Sbjct: 61  AIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNR 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A++   +   DL ++L A+TV+  G  I +  +E++++E L       +T+ M L  +
Sbjct: 121 QAAETETVLHVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV I +LR K+         ++TV G GY+LRE A
Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKEFDTP-LLQTVRGAGYMLRETA 226


>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
 gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 233

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++A+A  ++  L  E + V     G++ +EL +  +   I+LD  L    G  
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +S  D    L  G DDYI+KPF  EEL ARIR I+RR + 
Sbjct: 67  VLRRIRKQS-DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S    G L ++L          +I+LT KE+ ++  L        +++  L
Sbjct: 126 TQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      +   +DV+I  +R KL      K  I+TV G GY LRE+
Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKLGEPY--KKLIKTVRGLGYCLRED 232


>gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 223

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K +A  I+  L+ E + V     GE+G+   +   +D +ILD+ L    G 
Sbjct: 1   MRILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR A    PV +L+   + +D V GL +G+DDY++KPF   EL AR+RA+ RR  
Sbjct: 61  SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V  DL ++  ++ V      I LT KEY ++E L     T +T+ M    +++
Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  +RKK+ +    +  I TV G+GY L+
Sbjct: 181 HSFESFTNIIDVYVNYVRKKV-DKGFDRKLIHTVRGQGYTLK 221


>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 249

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 122/234 (52%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D+  +   +   L+   F V +   G   ++  +    D ++LD+ L D+ GF 
Sbjct: 16  HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR   ++TP+  L+    + DKV+GL  G DDY++KPF  EE++ARIRAI+RR+  
Sbjct: 76  VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHA 135

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++   DL ++ DA  V      + L+  E++++  L L     ++K   L+H+
Sbjct: 136 IENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKK---LSNAAGGK--NYIETVWGRGYVLRENAKD 227
           ++     +  I++ +I  LR+K   +  A G      I+T  G GY+LRE   +
Sbjct: 196 WEYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYMLREPKAE 249


>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 235

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+LIED+ ++   I+  L+   + + V   G  G++L +  +FD +ILD+ L ++ G +
Sbjct: 3   KIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    S P+  L+ + + E+ V GL+SG DDY+ KPF   ELVAR+++++RRS  
Sbjct: 63  VCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSNN 122

Query: 122 HAQSLI-----------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +    I              DL VN   K V   G  I LT  EY+++          ++
Sbjct: 123 NGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNPEKVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   L+ ++    E    ++DV++  LRKKL N    K  I TV G GYVL++
Sbjct: 183 RAEILDAVWGVNYELGTNVVDVYVNYLRKKLDNQEDNK-LIHTVIGMGYVLKK 234


>gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           ycbL
 gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G + L
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  ++
Sbjct: 61  KIIRE-KSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 124 QSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I    L++++D  +V   G  + LT  E+Q++ L +       TKE     
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRS 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225


>gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
 gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM
           12614]
          Length = 237

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+   + V     GEDG  L     +DA++LDLGL  + G 
Sbjct: 16  MRILVVEDDTDLNRQLVAALEEAGYVVDSATDGEDGHFLGDTEPYDAVVLDLGLPSLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ 
Sbjct: 76  SVLENWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAA 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++L +  V V G  + LT  EY+++  L   +   +++     HLYD
Sbjct: 136 GHASNELTCGAVRLDLRSGRVTVDGSAVKLTSHEYRLLSYLLHHQGKVISRTELTEHLYD 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VF+ +LRKK+ +       IET+ G GY L
Sbjct: 196 QDFDRDSNTVEVFVGRLRKKIGSD-----MIETIRGLGYRL 231


>gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
 gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
           3L]
          Length = 230

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 126/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  LA ++   L ++ + V +   GE   +  +  ++D ++LDL L  + GF
Sbjct: 1   MKILLVEDDILLAENLSEALTNQRYVVDLVTNGEIACQQSQMLDYDLMVLDLTLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      P+ +L+G  +  DKV+GL +GADDY+ KP +  EL ARIRA++RR +
Sbjct: 61  GVCRKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDL ++     V      IH T KEY ++E L       LT+ + + H++ 
Sbjct: 121 SIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + PE + ++ +I  LR+KL  A   ++ IETV   GY L++
Sbjct: 181 FENPPEEETVNAYIKSLRRKLRLAGAPRDLIETVHSVGYRLKQ 223


>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 230

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+K +   +E+ LK+E +NV+    GE  +E+    E   ++LD+ +  + G EV
Sbjct: 5   ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K + P+ +LS  +   DK++G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CRRVRE-KYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I    + ++     V +  + + LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR KL     G   I TVWG GY + +
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIEK 230


>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 248

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G + ++L +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   +L ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 121/218 (55%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA ++   L +E + V V   G D +     + + AI+LD+ L  + G+ 
Sbjct: 3   RILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNGYR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    STP+ +L+     +D++  L +GADD++ KPF+   L++R+RA++RR   
Sbjct: 63  VCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGGA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL ++  ++T    G  I LTGKE+ ++  L  R    +TK   L++L+D 
Sbjct: 123 TRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWDF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  +++V +  LR+K+ +   G   I TV G GY
Sbjct: 183 AASATANLVEVHVSALRRKI-DVPFGAETIRTVRGAGY 219


>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
 gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
          Length = 239

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
 gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGVN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  +AG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SAGHDKLIQTVRGAGYRFSTKA 229


>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 222

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MKVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A      L+   F   +   G  G++      +D II+DL L    G+E
Sbjct: 3   RILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++R +R  K+  PV ++S      +K+RGL+ GADDY++KPF+  ELVARI++ +RR   
Sbjct: 63  IIREIRE-KLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRRYER 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I+   L +N  +  V + G ++ +T +EY+++  L+       +KE  L 
Sbjct: 122 LKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEHILV 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +   + V I K+RKK+        +IET+WG GY   +
Sbjct: 182 SIWGDDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFNK 228


>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 233

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +++ L+ + F+V     GE+ +++ +    DA ILD+ +  + GFE
Sbjct: 7   KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++EDK+ GL  GADDY+ KPF+ EE++ R+R I+RR + 
Sbjct: 67  LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++   DL++N +   V   G  + L+  E+ ++  L L     ++K   L++
Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+  K
Sbjct: 187 VWHYDFGGDGNVVESYISYLRRKI--DTQEPQLIQTVRGVGYVLRQPRK 233


>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 224

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 131/222 (59%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+  LA  IEL L  E + V V+  G +G+EL    E+  I+LD+ L  + G E
Sbjct: 4   RVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLNGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +++   S+ D+V GL +GADDYI KPF  EEL+ARIRA+ RR   
Sbjct: 64  VCRRIRAVK-QTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHA 122

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A+  +    DL+V+LDA+TV+     I LT +EY ++       N  LT++  L+ ++ 
Sbjct: 123 PAEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV++  LR KL        YI+TV G GYV+R
Sbjct: 183 FDTEVETNVVDVYVRYLRHKLDETDKE-RYIQTVRGAGYVMR 223


>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
 gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
           [Enhydrobacter aerosaccus SK60]
          Length = 232

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-D 56
           M+   IL++ED+ A+   I   L+   F+            L   +  + I+LD  L   
Sbjct: 1   MKNETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLPNG 60

Query: 57  IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           + G ++ R L+  +     P+ +L+     ++KV+GL +GADDYI+KPF+  ELV+RI+A
Sbjct: 61  LSGIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RRS     +  I  G LS++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRSSALSGEKPIDVGGLSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++ G    E + IDV I +LRK L    G  +YI+TV G GY  
Sbjct: 181 LLDQVWGGNVYVEDRTIDVHIRRLRKVLEP-FGFADYIQTVRGTGYRF 227


>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 248

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL +    D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +        +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 130 SVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70]
 gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V + G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
 gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
           102891]
          Length = 239

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRDDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++  L    ++V+    G + +E+      D I+LD+ +  + G+ V
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            RA+R      P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +R+R I+RR    
Sbjct: 75  CRAIRKTS-RVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGSL 133

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G L ++ + + V     RI LT  E+ ++ELL+      ++++  L 
Sbjct: 134 KPFNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLE 193

Query: 177 HLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + +++DV + +LR KL     G   I T+ G GY L+
Sbjct: 194 KVWGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLK 241


>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---RHIGTVIRVGYKFEE 225


>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SM4/1]
          Length = 234

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + V+  +  ++G+++        ++LD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL AR+++ +RR  
Sbjct: 64  EMCRKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYT 122

Query: 121 G---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A++ I    L +N D   V V    I LT  E+ ++ LL+       + 
Sbjct: 123 QLNPQSSALQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFST 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     +++ +       + V I +LR K+         I TVWG GY + +
Sbjct: 183 DEIFEKVWNEKVYEANNTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234


>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
 gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
 gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
          Length = 239

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L +     ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVMNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp.
           P08]
          Length = 237

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ +      ++LDL L    G ++
Sbjct: 11  ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLMLPGRDGIQI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+  S   D VRGL +GADDY+ KPF   ELVAR+RA +R     
Sbjct: 71  CQDIRRESG-VPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAAQ 129

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  L+   N   ++E  L  ++ 
Sbjct: 130 REEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 190 YTNSADTRLVNVHVQRLRSKVERNADHPQMIITVRGIGYRICTPGEE 236


>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
 gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ketogulonicigenium vulgare Y25]
          Length = 229

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+ A    +    ++E + V     G+  +        D I+LD  L  + G E
Sbjct: 7   HILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLPGVSGIE 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +  R    + PV +LS  S   DKVRGL++GADDY++KP++  EL+AR RA +RR+
Sbjct: 67  ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRRT 126

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++   D++++ +   V   G+ + L   E++++  L  R     ++E  L+ +
Sbjct: 127 RPATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRVWSREQLLDRV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L    GG + + TV G GY L
Sbjct: 187 WGRDIYVDSRTVDVHVGRLRKAL-MIHGGTDPLRTVRGAGYAL 228


>gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 233

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L +  + V   + G D +++ K  +   ++LDL L  + GF+
Sbjct: 5   KILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLLLLDLMLPGMDGFD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + ++       T + +L+      DK+ GL+ GADDYI+KPF+  EL+AR++A++RR+
Sbjct: 65  VCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRRT 124

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +    +  + +L V+ +   V V   ++ LT KE++++++L   K   L +E  L+
Sbjct: 125 SSFNEAEDDVYNSENLKVDFERHEVYVNDRKVDLTLKEFELLQILIKNKGRILKRETLLD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E + +DV I  LRKK+        +IET+ G GY    
Sbjct: 185 KIWGYEYIGETRTVDVHIRYLRKKIEEDDKNPRFIETIRGVGYRFNP 231


>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 233

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ ++  +EL L++EN++V+     ++ +   +  E D  ILD+ L D+ GF 
Sbjct: 4   KILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMSGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +RV   + P+ +L+      DK+ GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 64  LCQKIRVNH-AYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +         +S+IV   L +N       +    + LT  E+ ++ +L  RK   ++ E 
Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182

Query: 174 FLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++           I V I  LR+K+ +      YI+T+WG GY + 
Sbjct: 183 LFREIWKDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGYKIE 232


>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +EL L+ E + V     G DG+E      FD IILD+ L  + G E
Sbjct: 5   KILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           VLR LR      PV +L+    I DKV GL  GADDYI+KPF  EEL+ARIR   +  R 
Sbjct: 65  VLRRLRQ-NSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I  G L +N+           + LT  E+ +++ L + KN  L++E  L  ++
Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV+I  LR K+ +      +I TV G GY L++ 
Sbjct: 184 GYDYTGDTNVVDVYIRYLRSKI-DDRFNHKFIYTVRGVGYQLKDE 227


>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
 gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
          Length = 235

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+   IEL+L+ EN+ V   + G+  ++L   +  D ++LDL L D  G++
Sbjct: 3   KILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   K + PV +LS  + + DKV GL+ GA+DY++KPF+  EL+ARI+ I+RR+  
Sbjct: 63  LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +S          I+  +L+ +L+++ V   G  + LT KE++++E L  R +   T++
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L   +      + + +D+ I +LRKKL + A    Y+ T++G GY L
Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL++ED+  +   +   L    + V V   G +G+   + +  D I+LD+ +  + G
Sbjct: 1   MKTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E LR  R     TPV  L+   +  DKV GL+ GADDY++KPF+  EL+ARIRA++RR+
Sbjct: 61  LEFLRKYRAD-AGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRA 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G L ++  ++T  V+G R+ LT  E+++++L         T+   L HL
Sbjct: 120 GEKPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHL 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    + +DV +  +R K+    G    IETV+G GY L    
Sbjct: 180 -QEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLNPGG 225


>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  +NF V     GE+ ++L         IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R      P+ +L+      D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + + + ++  G + V+  A  V V+G  I L+ KE++++      +   L++E  LN ++
Sbjct: 124 QTNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL        YI+TVWG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTVWGMGYKFE 223


>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
           C3-41]
 gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 132/226 (58%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L+  I   LK   + V     G++ +EL +  E+D IILDL L  + G 
Sbjct: 1   MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +RV      + ILS  S+I DK+ GL  GA+DY+ KPF+ +EL ARIR ++RRS 
Sbjct: 61  EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   +++++   K V V G  IH+T KEY ++E L L +N  ++ E  + H++D
Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     +   I  LRKK+++  G    I+T+ G+GY++ EN +
Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGYIITENDR 226


>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 247

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 130/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   I   + ++ DA++LD+ L D+ GFE
Sbjct: 22  RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR    + PV  L+   ++E++V GL  G DDY++KPF+ EE++AR+RA++RRS  
Sbjct: 82  VLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGF 141

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++  GDL++N ++  V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 142 AVTARQDAVLTVGDLTLNEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDR 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+   AG +  I T+ G GY+L+ 
Sbjct: 202 VWNYDFGGQANVVELYISYLRKKI--DAGRQPMIHTLRGAGYLLKP 245


>gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942]
 gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942]
          Length = 236

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D++ +   I+ +L  E    V  +   +DG    +  + D ++LD+ L D  G+
Sbjct: 7   KVLIIDDEQEILALIKTVLVKEGIENVITSSTAKDGFTQFQQKQPDIVLLDIMLPDGEGY 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V + +R    + P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 67  DVCKQIRELS-NVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRAN 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+G A ++I  G   ++     +   G  + L  KE ++++      N  ++KE   
Sbjct: 126 YSQSKGIADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLY 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++          I V I +LR+K+       +Y+ TV G GY   E
Sbjct: 186 NAVWGEDSFGFDNTIMVHIRRLREKIETKPSKPDYLVTVKGLGYKFVE 233


>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 238

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  + L L+ E   V     G+DG+   +   +DA++LDL L  + G E
Sbjct: 6   RILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R     TP+ I+S  SS   ++ GL+ GADDY++KPF+  ELVAR++A++RR   
Sbjct: 66  ICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVDA 125

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            AQS       +    L ++  A+   + G  + LT +E+ ++   + +     ++   L
Sbjct: 126 LAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           N ++  + E     ++  I +LR K+         I TVWGRGY   E  + E
Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKVERNPAQPTRILTVWGRGYKFAEAGERE 238


>gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 228

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G LS++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
 gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
           regulatory protein [Stenotrophomonas maltophilia K279a]
 gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
 gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL    G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220


>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 240

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    ++V+   LG++G++L   K  + D ++LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q       +  G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 IRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 209

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTG 130
             P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++   Q  I  G
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFG 119

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++        + +
Sbjct: 120 PILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTV 179

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 DTHVKTMRLKLGESG---NYIQTVWGVGYKFE 208


>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
 gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
           15053]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L  E + V     G + +E+  +  E   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R +   TPV +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  QVCREIRQSS-QTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSH 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+ +I  G + +N  A  V+ +G +I L+ KE++++      +   L++E  LN+++
Sbjct: 124 VLGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +     NYI+T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG---NYIKTIWGMGYKFE 223


>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
 gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +E+ LKS+ + V+    G +G+++ +  E    I+D+ +  + G +
Sbjct: 5   HVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTIKLRE-KYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRK 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A+         S+   G L +N D   V V G  + +T  EY+++ LL        + E
Sbjct: 124 FAEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +++ R       I V +  +R+K+        Y++ VWG GY + + A
Sbjct: 184 EIYERVWNER-AVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235


>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 231

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++++   +   L+   + V   + G+  + + +   +D  +LD+ +  + G+E+
Sbjct: 8   ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  + + PV  LS   S  DKV GL+ GADDY++KPF   EL+AR+RA++RR +  
Sbjct: 68  CRNLRT-RTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMD 126

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A+ +    I  G ++++      E     I LT +E++++  L        ++E  L   
Sbjct: 127 AEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREA 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E K +D  I +LR KL+ A      IETV G GY  R
Sbjct: 187 WGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFR 230


>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
           [Geobacter bemidjiensis Bem]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K LA  +   L+ E +   +   G +G+E  +  + D I+LDL L  + G +V
Sbjct: 4   VLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFGTDV 63

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + ++        PV +L+      DKV G + GADDY+ KPF+  EL+ R++A++RR  
Sbjct: 64  CKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKA 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A ++I  G + ++ +   V V G  I+ T  E++++  L +R     ++++ L  +
Sbjct: 124 PEPAATNIINVGGIRIDTERHEVTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I +LR K+ NA    + I+TV G GY L 
Sbjct: 184 WGYNFVEDTRTVDTHITRLRTKMGNAG---DMIKTVRGFGYKLE 224


>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
 gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 113/219 (51%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  +   +EL L     +V   + GEDG+   +    + ++LDL L  I GFEV
Sbjct: 4   ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A    PV +L+      D V GL +GADDY+ KP     L ARIRA++RR+   
Sbjct: 64  CRGIRAAGP-VPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAASS 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              + V  DL ++  + TV  +G  + LT  E +++  LS      L+++  L  +++  
Sbjct: 123 PDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+        Y++TV G GY  
Sbjct: 183 YLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGYRF 221


>gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K+++  ++  L+ E + VY T+ G DGIE+ +    D +ILDL L DI G EV
Sbjct: 4   ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR       + +L+  S++ DK+ GL  GAD+Y++KP +  EL AR+ A+ RR    
Sbjct: 64  CKILRKIS-DVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGCK 122

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +++I   D  L +++D + V++ G  I+LT  E+ ++ +L+  +    T+E  +   + 
Sbjct: 123 KENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAFG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   + IDV I  LRKK+        YI TV   GY  
Sbjct: 183 MEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223


>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
 gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Providencia rettgeri DSM 1131]
          Length = 244

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     D  +  I        D ++LD  +    G +
Sbjct: 19  RILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 78

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        PV +L+     ED+V+GL+ GADDY+ KPF+ +EL+AR++AI+RR 
Sbjct: 79  VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 138

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    L+++  +  V      I +   EY+++           ++E  LN++
Sbjct: 139 SPMATEDIIEMNGLTLDPTSHRVTSNDIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 199 WGANVYVEDRTVDVHIRRLRKALETE-GHDKMVQTVRGTGYRF 240


>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 250

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 8/243 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   + + L+   + V     G  G  L      D IILDL L  + G  
Sbjct: 3   RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   P+ +L+ +   +DK+ G  +GADDY++KPF  +EL+ R+RA++RRS
Sbjct: 63  VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRS 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +       G  I LT  E+ ++  L  R   T++    
Sbjct: 123 DRIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYL 233
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   N  D      
Sbjct: 183 LQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLELPNIADPVPPQP 242

Query: 234 ETA 236
           E A
Sbjct: 243 ELA 245


>gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 221

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   ++  L+   + V +   GEDG  L     +DA ILDLGL +I G 
Sbjct: 1   MRILIVEDEPTLGPQLKATLEGAGYAVDLATDGEDGHFLGSTETYDAAILDLGLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R  K + PV +L+   S  DKV GL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TVLDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A S +  GD+ ++  +  V + G  + LT +EY+++  L   K   +++   + H+YD
Sbjct: 121 GNASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ ++RKKL         I T+ G GY L + 
Sbjct: 181 QDFDRDSNTIEVFVTRIRKKLGAD-----IITTIRGLGYQLDDP 219


>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR    +   PV +L+ +S  +DKV G  +GADDY++KPF  EEL+AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 250

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 74  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 133

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 134 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+ +                IET  G GY++R  
Sbjct: 194 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 246


>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 247

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++  L    ++V+    G + +E+      D I+LD+ +  + G+ V
Sbjct: 15  ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            RA+R      P+ +L+ +S + D+V GL+ GADDY+ KPF+ +EL +R+R I+RR    
Sbjct: 75  CRAIRKTS-RVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGSL 133

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G L ++ + + V     RI LT  E+ ++ELL+      ++++  L 
Sbjct: 134 KPFNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLE 193

Query: 177 HLYDGRD--EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++   +    + +++DV + +LR KL     G   I T+ G GY L+
Sbjct: 194 KVWGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLK 241


>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
 gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
           ATCC 8503]
 gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
           [Parabacteroides sp. D13]
          Length = 225

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +    ++DV++  LR K+         I TV G GY++ 
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIHTVVGVGYMME 224


>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 222

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  E + +     G   + L    +   ++LDL L ++ G E
Sbjct: 3   KILIVDDDPAIREILRAYLSHEGYELSEAADGVSALALAPAAD--LVVLDLMLPEMDGLE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+     E++VRG + GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 61  VARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSGI 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    +V GDL +   ++ V + G  + L+  E+ ++  L+       ++E  L  ++  
Sbjct: 121 H--DRLVYGDLEIVPGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVWGS 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++DV +  LRK+L +      +IETV G GY  +E 
Sbjct: 179 DFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRFKET 221


>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   IE+ L +E + V+    G DGI +    +   ++LD+ +  I GF+V
Sbjct: 4   VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+ +LS  S   DK++GL +GADDY+ KPFN  EL+AR+++ +RR    
Sbjct: 64  CMKIRKD-YNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +         +I   D+++N     V   G  + LT  EY+++ LL+    T  + E  
Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       + V I +LR+K+         IETVWG GY + E
Sbjct: 183 FKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231


>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD   A     +L+   + V         +++ + +  D I+LD+ +  I GF
Sbjct: 1   MNILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R +    P+  LS  S ++D+V GLQ G DDY+ KP+   EL+AR+ A++RR  
Sbjct: 61  DVCRQIRRSS-EVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + +  GD++++     V    G  + LT  E++++  L       L     L+
Sbjct: 120 ADVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELTPLEFRLLYYLMKNAGRILNVSQILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++ V+I +LR K+        ++ TV   GY    
Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFEP 226


>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
          Length = 245

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+ +                IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 241


>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+++A      L+   F   +   G  G++L    EFD I+LD+ L    GF+
Sbjct: 3   KILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K   P+ +++       K++GL  GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  VCQEIRAVK-EIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    + +S I+ G + + L A+ V +  + +    KE++++  L+   N   +K+
Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+ ++      +   I V I ++R+K+   +    YIETVWG GY  
Sbjct: 182 TLLDRIWGEESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGYRF 230


>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED   L  ++   L +E F V +   G +G+       +DAI+LD+ L  + G+
Sbjct: 1   MRVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR AK  TPV +L+      D+  GL  GADDY++KPF+   L AR+ A++RR  
Sbjct: 61  DVCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++   +T    G  I LT +E+ ++E L   +   ++K+  L H++ 
Sbjct: 121 IPRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +  +++V+I  LR+K+ +       IETV G GY L  + +
Sbjct: 181 EHFDLDPNVVEVYIGYLRRKI-DTPFRVRSIETVRGAGYRLAADGR 225


>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
           [Bacillus anthracis CI]
 gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
           protein [Bacillus cereus biovar anthracis str. CI]
          Length = 841

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 680

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++ +++R +  
Sbjct: 681 CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQIT 739

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 740 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 799

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 800 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 838


>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
 gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Eubacterium eligens ATCC 27750]
          Length = 227

 Score =  268 bits (687), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + +K+E + VY    G+D +++      D  ILD+ + D+ G  +
Sbjct: 4   VLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDGITL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ +LS      DKV GL +GADDY++KPFN  EL+AR++A +RR +  
Sbjct: 64  CMEIR-KKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL++N+D   V +    I LT KE+ ++ELL   K    + E   + L
Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182

Query: 179 YDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +  +   +I V I  +R K+        YI+TVWG GY  
Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGYKF 226


>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
           [Alicycliphilus denitrificans BC]
 gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
           denitrificans K601]
 gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alicycliphilus denitrificans BC]
 gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 233

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 10/235 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    +L++ED+ A+A  I + L+   F     +  E           D I+LD  L  
Sbjct: 1   MKPFPHVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLPG 60

Query: 57  IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           + G ++ R  R A  +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA
Sbjct: 61  MSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR         +  G LS++        QG  + L   E++++  L        ++  
Sbjct: 121 VLRRRAPEQVADSVAIGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L+ ++      E + +DV + +LR+ L  A+     +ETV G GY L      E
Sbjct: 181 LLDKIWGDHVYIEERTVDVHVKRLREALGEASA---MLETVRGAGYRLTAQGALE 232


>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
 gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
 gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
 gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 126/231 (54%), Gaps = 9/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+K +   IE+ L +  +NV   + G++ +++ K      ++LD+ +  + 
Sbjct: 1   MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR
Sbjct: 61  GIEVCRKVRE-SLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119

Query: 119 SR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +          + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E
Sbjct: 120 AYYFSGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  +       + V + ++R K+     G+  I TVWG GY + +
Sbjct: 180 EIFEKVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 248

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G + ++L +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   +L ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 259

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL      D ++LD+ +  + G+ V
Sbjct: 22  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDGYGV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 82  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEKE 140

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 141 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 200

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 201 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 248


>gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
 gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BDRD-ST196]
 gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides DSM 2048]
          Length = 224

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 229

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLRLDPVSHRVTANDTALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L   AG    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-FAGHDKLIQTVRGAGYRFSTKA 229


>gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  LA  ++L L++E F+  +   G  G+E     E+D I+LD+ L ++ G E+
Sbjct: 13  LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K   P+ +++    + D V GL SGA+DY++KPF  EEL ARIR ++R+    
Sbjct: 73  CRRIRETK-DVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESK 131

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   IV G L +  +A+ V +    I LT +E+ ++  +   K   +++E  L  ++   
Sbjct: 132 ANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFD 191

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 I+DV+I  LR K+ +    K  I TV G GY LR+
Sbjct: 192 FMGNTNIVDVYIRYLRNKIESDPSVK-LIHTVRGIGYTLRD 231


>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 280

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 37  ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDGFAV 96

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI +I+RR    
Sbjct: 97  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGRG 155

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +           Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 156 SATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVPR 215

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 216 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265


>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++       L+   F V + D G +G+EL +    D +ILDL L  + G EV
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR       + +L+  S   D+V GL+ GADDY+ KPF+  ELVARI AI+RR R  
Sbjct: 65  AARLRQES-DVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRSA 123

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +    L ++ + + V V    I LT  E+ ++  L+ R    L++E  L+ ++
Sbjct: 124 SPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +++DV++ ++R+KL   AG    I+TV G GY   + A
Sbjct: 184 GDNFYGTDRVVDVYVGQVRRKLEAVAGVP-LIQTVRGVGYKFIDAA 228


>gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 227

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++   L +E F V VT  G  G+       +D I+LDL L    G+
Sbjct: 1   MRVLLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR   + TPV +L+      D+      GADDY++KPF+   LVARIRA++RR  
Sbjct: 61  DVLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++  +++V      I LT +EY ++  L       ++K   L++++D
Sbjct: 121 PERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +++V+I  LR+K+ +   G   + TV G GY+L  +
Sbjct: 181 PAFEGGDNVVEVYIGYLRRKI-DVPFGLQTLATVRGMGYMLGAD 223


>gi|47567578|ref|ZP_00238289.1| response regulator DrrA [Bacillus cereus G9241]
 gi|47555773|gb|EAL14113.1| response regulator DrrA [Bacillus cereus G9241]
          Length = 234

 Score =  268 bits (687), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
 gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
          Length = 241

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  +   +++ L+ EN+ V+  D GED I++    ++D I+LDL L  + G 
Sbjct: 6   INLLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R AK  TP+ +L+       ++ G + GADDYI KPF+  E+V R+ AI++R++
Sbjct: 66  EVAGKIREAK-DTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124

Query: 121 GHAQSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     DL       ++  +  V   G+ ++LT KEY ++  L+   +    +E  
Sbjct: 125 SSKPKEKANPDLIEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
           L  ++      +++ +D  I +LR+KL+  +      I TVWG GY  
Sbjct: 185 LREVWKYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGYKF 232


>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
          Length = 233

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++A+A  ++  L  E + V     G++ +EL +  +   I+LD  L    G  
Sbjct: 7   KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +S  D    L  G DDYI+KPF  EEL ARIR I+RR + 
Sbjct: 67  VLRRIRKQS-DVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S    G L ++L          +I+LT KE+ ++  L        +++  L
Sbjct: 126 TQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      +   +DV+I  +R KL      K  I+TV G GY LRE+
Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKLGEPY--KKLIKTVRGLGYCLRED 232


>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D+  +   +   L+   ++V     G + +   +  E D ++LD+ +  + GFE
Sbjct: 15  HLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLDGFE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      PV  L+   ++EDKV GLQ+G DDY++KPF+ +ELVAR+RA++RRS  
Sbjct: 75  VVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSGH 134

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     +++   DL +N D+  V   G  + L+  E++++  L       ++K   L+
Sbjct: 135 REQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLLS 194

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     +  +++ ++  LR+K+    G    + TV G GYVLR
Sbjct: 195 AVWNYDFAGDAGVVESYVSYLRRKV--DTGEPKLLHTVRGVGYVLR 238


>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 247

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 124/237 (52%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   PV +L+ +S  + KV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  ICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +       G  + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   +   + E
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSLPPSAE 239


>gi|187928922|ref|YP_001899409.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|309783197|ref|ZP_07677913.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
 gi|187725812|gb|ACD26977.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
 gi|308918075|gb|EFP63756.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp.
           5_7_47FAA]
          Length = 228

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 126/229 (55%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V +   G DG  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLQQGLSEAGFVVDLARNGLDGRHLAMTGDYDLLILDVMLPDLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR  +++ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QILHALRSTELAVPVLFLTARDSVADRVKGLELGADDYMVKPFAFAELLARVRTLLRRGS 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I   DL ++L  +     G RI LT KE+ ++ELL+ R    L + +  + ++
Sbjct: 121 APSLAERIQVADLVLDLTRRRASRGGQRITLTSKEFSLLELLARRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +       I TV G GYVL      E
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-EPKLIHTVRGMGYVLEGPEDGE 228


>gi|218234767|ref|YP_002365906.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162724|gb|ACK62716.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L K   +D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTIPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+ +      YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232


>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
 gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
          Length = 222

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MRVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G LS++    TV+     I LT +EY ++E L   K+  +TK   L +++D
Sbjct: 121 PERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHHHGPDNVVEVYVGYLRRKI-DVPFGTNTIETIRGVGYRL 220


>gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria]
          Length = 227

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    +   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILVVEDEPKTGEYLRQGLTEAGYVSDLVPNGADGLHLALQGEYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILRRGH 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  +++   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGNEGTMLKVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHAVKLIQTVRGMGYVLDVPEEE 227


>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 12/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+ +DD  +   I L LK   ++V   + G++ I L +  + D I+LD+ + DI G+
Sbjct: 4   IKVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K + P+ +L+      D+V GL+ GADDY++KPF+  E+VARI+AI RR  
Sbjct: 64  EVCKEIR-KKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMP 122

Query: 121 G-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +          S+ +D + V   G ++    KE+ ++  L        T+E 
Sbjct: 123 ALTNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENAKD 227
            L  ++      +V+ +DV I ++R      A  +   I TVWG GY    N K+
Sbjct: 183 LLQKVWGFDFAGDVRTVDVHIKRIR---DEFAKHQILCIHTVWGVGYQFHINKKE 234


>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 223

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL D+ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
 gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  ++  ++L L+ E + +     G +G++     ++D I+LD+ L  + G E
Sbjct: 8   RILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNGME 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      D V GL +GADDYI+KPF  EEL+ARIR  ++R + 
Sbjct: 68  VCRRIRQIS-DIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKKL 126

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + I    L ++LD   V      I LT  E+ +++     KN  L ++  LN ++
Sbjct: 127 EIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +  ++DV++  LR K+ +    + +I T+ G GY+L++ 
Sbjct: 187 GFDYLGDTNVVDVYVRYLRTKI-DNKYNERFIYTIRGVGYLLKDE 230


>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 245

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  + + L+ E + V     G + I + +    DA++LD+ L D+ G  
Sbjct: 21  RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 81  VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 141 AAARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG    I T  G GY+++ 
Sbjct: 201 WSYDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLIKP 243


>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ A+A   +  L+   F V   + G  G++     +FD  ILDL L  I GFE
Sbjct: 3   KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K +TP+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIREEK-NTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    + ++  A+ V V G     T KE+ ++  L+   N   TKE   
Sbjct: 122 LIGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D     ++  + V I K+R+K+        YIET+WG GY  +
Sbjct: 182 REIWDMESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRFK 228


>gi|229171861|ref|ZP_04299431.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228611633|gb|EEK68885.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L    ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTAQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQT-TDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHIK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QAVPHEQKANFSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 248

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V     G + ++L    E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   +L V+ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 HVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
 gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
 gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Paris]
 gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Corby]
 gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
           [Legionella pneumophila 2300/99 Alcoy]
          Length = 226

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E FNV     GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIRE-HLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ V+   + V + G  + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224


>gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
 gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           AH621]
          Length = 224

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 131/223 (58%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K STP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-STPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREENT 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q   S +   DL + ++++T+  +   I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 EQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 270

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 44  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS  
Sbjct: 104 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSGA 163

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++V GDL+++ ++  V   G  I LT  E++++  L       L+K   L+ +
Sbjct: 164 VSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDRV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +  +++++I  LR+K+   AG    I T  G GY+L
Sbjct: 224 WSYDFGGQANVVEIYISYLRRKI--DAGRAPMIHTRRGAGYLL 264


>gi|229101805|ref|ZP_04232520.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681598|gb|EEL35760.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L +  GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVMLPEQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  LS  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQQ-TDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++       +   + V I KLR+K+        YI+TV G GY   
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFV 232


>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 232

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  I GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGIDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+      D V+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G  S+N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 KEKTNTITSGPFSLNIIEERLYRDGQLVDLTPTEYMILQYLMNQSSKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
 gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L+  ++        +D   L    + D I+LD  +    G E
Sbjct: 5   KILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  +++   P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  LARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             H  S  I+   L ++  +  V +    + +   EY+++E     +    T+   L+H+
Sbjct: 125 DPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQLLDHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + +DV I +LRK L+   G ++ ++TV G GY  
Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALAID-GHEDLVQTVRGTGYRF 226


>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 238

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/233 (35%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  I   L+   F+V     G++G+E      FD +++DL L ++ GF 
Sbjct: 6   RLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPELDGFT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR +R      P+ I+S  S  E KV+G   GADDYI+KPF+ EEL ARI + +RR R 
Sbjct: 66  LLRTIRKTH-EIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  ++  +    LS++   K V + G  ++LT KEY+++ LL+     T +KE  L
Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++   D      + V I  LR KL + +    +I+TVWG GY      KDE
Sbjct: 185 EMIWKQEDISASNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRFIGEDKDE 237


>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
 gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           mollaretii ATCC 43969]
          Length = 239

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALEMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235


>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
 gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+K ++  I   L++ENF+V       +     +   F   ILD+ L DI GF+
Sbjct: 3   KILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVMLPDITGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+  S   DK+ GL  GADDYI+KPF   E++AR++A +RRS  
Sbjct: 63  LCKIIRKKH-HYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  Q+ ++  +L ++++ +   +Q   + LT  E+ +++LL  RK   ++ E     +
Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +        I V +  LR+K+ +     +YI+TVWG GY +
Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225


>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
 gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV +    I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIED 242


>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E   + E ++V  TD G++ + L      D ++LD  +    G E
Sbjct: 5   KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+  S  +D++RGL+ GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDLS++  A  V  +G  + +   E+++++          ++   L+ +
Sbjct: 125 RPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E++ +DV I +LR+ +    G  + + TV   GY L 
Sbjct: 185 WGSGSDIELRTVDVHIRRLRQAI-AVPGAADPVRTVRSAGYALE 227


>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 224

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQI 122

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20]
          Length = 238

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54
           RILL+ED++     +   L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 6   RILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 65

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV   +R +  S PV +L+   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 66  PRLDGTEVCTRIRRSS-SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124

Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR      + ++V G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              L  L+    E + K +DV I +LR ++   A     I TV G GY L  ++
Sbjct: 185 SQILERLWGPDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLDGDS 238


>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
           m4-4]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   I L LK E + V+  + GE+   +         ++D+ + +  G+E+
Sbjct: 4   ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNGWEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++     EDK++G Q G DDYISKPF+  EL+ R++A++RR + +
Sbjct: 64  CREIRDL-YDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKIN 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   ++ ++  +  V +    I    KE+Q++  L+       ++E  +  ++   
Sbjct: 123 THEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWGSD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   + +D  I K+RKKLS        I T+ G GY L 
Sbjct: 183 FDGFDRTVDSHIKKIRKKLSQQTAFD--IVTIRGLGYRLE 220


>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
           albilineans GPE PC73]
 gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
           albilineans]
          Length = 227

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 134/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL    G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 220


>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
 gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
           BP-1]
          Length = 242

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 7/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V  +  G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFT 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR        P+ +L+ +S   +KV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  ICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRA 123

Query: 120 RGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L++  +   V   G  I LT  E++++  L  R   T++    
Sbjct: 124 DRIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           L  ++    + +++ I V +  LR KL        YI+TV+G GY L   +  E  
Sbjct: 184 LKEVWGYDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCLELPSHIEPP 239


>gi|313200176|ref|YP_004038834.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
 gi|312439492|gb|ADQ83598.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. MP688]
          Length = 268

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F   +   G DG  +     +D IILD+ L    G+
Sbjct: 43  MRILVVEDEHKTGEYLRKGLTEAGFVTDLVHDGLDGQHMALAEHYDLIILDVMLPRASGW 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++ ALR A   TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++RR R
Sbjct: 103 QIIAALREAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 162

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L +++  + V+  G +I LT KE+ ++ELL  R+   L++ +  + ++D
Sbjct: 163 TREADVLQVANLEIDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 222

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +       I TV G GYVL
Sbjct: 223 MNFDSDTNVIEVAMRRLRAKI-DDPFEPKLIHTVRGMGYVL 262


>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +++  L++E F V +   GE+G+ L   +++D I+LD+ L  + G+
Sbjct: 1   MRVLVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A   TP+ +L+      D+   L +GADD++SKPF+   LVAR+RA+VRR+ 
Sbjct: 61  RVCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL+++   +T    G  + LT +E+ ++E L+      ++K   L  ++D
Sbjct: 121 RRLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  I++V I  LR+K+ +A   +  + TV G GY L  + 
Sbjct: 181 AAFDGDPNIVEVHISALRRKI-DAPFARTSVGTVRGAGYRLAADG 224


>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
 gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
          Length = 242

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 111/228 (48%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  S   DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++   N   T E   
Sbjct: 135 NQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 268

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 17/240 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+ A+   + + L+   + V   + GE+ + L    + D ++LD+ L  + GF V
Sbjct: 25  VMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGFAV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 85  CRRLRAESC-VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226
              L  L+    R   +++++DV++ +LR KL         I TV G GY    + ENA 
Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGENAP 263


>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 271

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 45  RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 104

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+V R+R ++RRS  
Sbjct: 105 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSGA 164

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++V GDL+++ ++  V   G  I LT  E++++  L       L+K   L+ +
Sbjct: 165 VSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDRV 224

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +  +++++I  LR+K+   AG    I T  G GY+L
Sbjct: 225 WSYDFGGQANVVEIYISYLRRKI--DAGRAPMIHTRRGAGYLL 265


>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
 gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
 gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
           SCRI1043]
 gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        + ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  + H + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis Tohama I]
 gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
           bronchiseptica RB50]
 gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
           pertussis CS]
          Length = 232

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 4/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      E    L +    D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGLSL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   PV +L+   + +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I    L ++     +      + +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E + +DV I +LRK L   +G   ++ETV G GY       
Sbjct: 185 GDHVFVEERTVDVHIRRLRKALEP-SGHDAHVETVRGSGYRFTAQVP 230


>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Cupriavidus metallidurans CH34]
          Length = 235

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR    +   P+ +L+  S  +DKV GL++GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 ++    L ++     V  Q      ++ L   E++++  L        ++   L
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDGGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LR  L    G  N IETV G GY L
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAAL-TPGGYSNMIETVRGSGYRL 229


>gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 226

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+     V   D G+DG+ L     FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    STPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        +   DL ++L +++V   G RI L  +E++++E L       +T+ M L  
Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+         I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFDTP-LIHTIRNAGYMLR 224


>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
 gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Methylobacterium extorquens PA1]
          Length = 239

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++L   +   L++E F V V   G++          D ++LD  +  + G E+
Sbjct: 11  ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSGIEL 70

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 71  CRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRRAK 130

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H   ++V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ ++
Sbjct: 131 PTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 191 GHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 233


>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
 gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
 gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
          Length = 230

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   IE+ L +  +NV   + G++ +++ K      +ILD+ +  + G EV
Sbjct: 5   VLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R   ++ P+ +LS  S   DK++G+ +GADDY++KPFN  EL  R+++++RR+   
Sbjct: 65  CRKVRE-SLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  G + ++ +  +V V G+ I LT +E+ ++ LL+  K    + E    
Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V + ++R K+     G+  I TVWG GY + +
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230


>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
 gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
 gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
 gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +    ++DV++  LR K+         I TV G GY++ 
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIHTVVGVGYMME 224


>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
 gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
          Length = 236

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 9/220 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ +   ++  L  E F+  +   G   + L +   FD I+LD+ L  + G E
Sbjct: 4   QVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR   + TP+ ++S  S   DKV  L+ GADDY++KPF+  EL+AR++A++RR++G
Sbjct: 64  VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A    + G L V  +   V      + LT KE++++  L    N TLT+E
Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
             L  ++      E +++DV I KLR+K+ +        E
Sbjct: 184 RLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQLFE 223


>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 226

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQ 219


>gi|229028889|ref|ZP_04184990.1| Response regulator [Bacillus cereus AH1271]
 gi|228732460|gb|EEL83341.1| Response regulator [Bacillus cereus AH1271]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEKNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIR-KKTDCPIFFLTAKTSDLDKISGFSQGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QAVPNEQKAHSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|229154782|ref|ZP_04282897.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228628730|gb|EEK85442.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 234

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+ A+A ++   L+ E + V     G   ++L +    D +ILD+ +  + G 
Sbjct: 1   MHILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +  RALR +  +TPV +L+  + + D+V GL +GADDY++KPF  +EL+AR+RA+VRR  
Sbjct: 61  DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRGG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++   + V     ++ LT  E+ ++E         L++E    
Sbjct: 121 YAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMFR 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++          +DV++  LR+KL    G    I TV G GYVLRE+ 
Sbjct: 181 TVWGHDFGAGSNGLDVYVGYLRRKLEQD-GEPRLIHTVRGVGYVLREDP 228


>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 230

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 131/230 (56%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA  +   L+ E F V     GEDG+       FD I+LD+ L  + G+
Sbjct: 1   MRVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +I TP+ +L+      D+      GADDY+ KPF+   LVAR+RA+VRR  
Sbjct: 61  EIVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDLS++   + V      + LT +E+ ++E L    +T LTK + L +++D
Sbjct: 121 PARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +  I++V+I  LR+K+ +A  G + I+TV G GY L   A+ E+ 
Sbjct: 181 AHYDGDENIVEVYIGYLRRKI-DAPFGAHTIDTVRGVGYRLT-TARPESP 228


>gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 228

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L  E + + V   G DG+ +     +D I+LD  L  I GF
Sbjct: 1   MKLLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR  K  TPV +L+    IED+VRGL++GADDY+ KPF   ELVARI  ++RR+ 
Sbjct: 61  GLLAALRQNK-QTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAA 119

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G A +     +  GDL V+L  +     G RI L+ KE+Q++ LL  RK   L++     
Sbjct: 120 GTAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   +    +IDV + +LR KL +    +  + TV G GYVL +
Sbjct: 180 QVWDVNFDHGTNVIDVAVRRLRSKL-DLPFERPLLHTVRGMGYVLED 225


>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 227

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  I ++L+S++F+    D G   +E  +  + D ++LDL L    G E
Sbjct: 4   KILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D VRGL++GADDYI+KPF  +ELVAR+RA +R+S  
Sbjct: 64  VCREIRRTSG-VPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  GDL +++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R + + ++++V + +LR K+   A     + TV G GY 
Sbjct: 183 RHQADTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGYR 221


>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
 gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
          Length = 237

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + + L++E ++V +   G D   L    EFD  +LD+ L D+ GFE
Sbjct: 5   RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR +R  + + PV +L+   S  DK+ GL  GADDY+ KPF   ELVAR +A +RR   
Sbjct: 65  LLRTIRTER-TYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123

Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +           A  +I    LS+N DA+TV V    +  T  EY ++  L+  +   + 
Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++D          + V I  LR+KL + A    +I+ +WG GY + +
Sbjct: 184 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 237


>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 257

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   +++ L+ E + +   + G   +   + ++ DA++LD+ L D+ G 
Sbjct: 31  IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      PV  L+   S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 91  QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 150

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL+++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 151 LVVSDSVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 210

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+K+   AG    I TV G GY+L+
Sbjct: 211 RVWSYDFGGKSSVVEIYISYLRRKI--DAGRNPMIHTVRGSGYMLK 254


>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 25  VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 85  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 144

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++  L+      L+++  L  ++ 
Sbjct: 145 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 204

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  + DVF+  LR+KL    G    I TV G GYVLRE A
Sbjct: 205 YDFDVDTNVADVFVSYLRRKLERD-GLPRVIHTVRGIGYVLREEA 248


>gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 238

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 15/240 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M+IL+IED+ ++   + +  K E +       G +  E      +E+D I+LDL L    
Sbjct: 1   MKILMIEDNHSVCEMMAMFFKKEGWQYEFAYDGVEAEEKFSAAPHEWDVILLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKALQRR 120

Query: 119 SRGHAQS----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
           S+  A             I T    ++   + V + G  +  LT KE+ +++ L+ +   
Sbjct: 121 SQLSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASKPRQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             T+   L  ++D     + + +D  I KLR+KL     G   I+TVWG GY   +   +
Sbjct: 181 VFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLEAV--GPQVIQTVWGVGYKFDDEGNE 238


>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
 gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
          Length = 251

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   + + L+   + V     G  G  L      D IILDL L  + G  
Sbjct: 3   RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   P+ +L+ +   +DK+ G  +GADDY++KPF  +EL+ R+RA++RR+
Sbjct: 63  VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRA 122

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q+     ++  G L++  +       G  I LT  E+ ++  L  R   T++    
Sbjct: 123 DRIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 183 LQEVWGYEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230


>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
 gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
          Length = 239

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  +
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR    
Sbjct: 67  CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  +
Sbjct: 127 LPGTPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 209

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 56/212 (26%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGHSVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTG 130
             P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR ++   Q  I  G
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQFG 119

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++        + +
Sbjct: 120 PILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTV 179

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 DTHVKTMRLKLGESG---NYIQTVWGVGYKFE 208


>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 237

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ ++   +E  L    F V     GE+ +++ +  E D IILD+ +  + G++
Sbjct: 7   KILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGYQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V ++LR      P+ +L+ +S + D++ GL+ GADDY+ KPF+ +EL +RIR I+RR   
Sbjct: 67  VCQSLRQES-DVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S       I  G L ++ + + V     RI LT  E+ ++ELL  R    +++  FL
Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185

Query: 176 NHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++    +   + +++DV + +LR KL       + I +V G GY
Sbjct: 186 QKVWGYSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGY 231


>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +  D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---RHIGTVIRVGYKFEE 225


>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
 gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
 gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
 gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
 gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
 gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
 gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
 gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
 gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
 gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
 gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
 gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
 gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
 gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
 gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
 gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
 gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
 gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
 gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
 gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
 gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
 gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
 gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
 gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
 gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
 gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
 gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
 gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
 gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
 gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
 gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
 gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
 gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
 gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
 gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
 gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
 gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
 gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
 gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ +       + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
           elongata DSM 2581]
 gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Halomonas elongata DSM 2581]
          Length = 229

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I + L+  +++V   D  +    +   ++ D ++LD  +    G E+
Sbjct: 6   VLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGTSGIEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  + +   P+ +L+  S  ++K++GL +GADDYI+KPF+  ELVAR++A++RRS 
Sbjct: 66  ARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRRST 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  +  +    L ++  +  V V G+ + +   EY++++     +    T+   L+ ++
Sbjct: 126 PHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +    +  I+TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDPY--QQLIQTVRGTGYRF 225


>gi|303238185|ref|ZP_07324721.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302594231|gb|EFL63943.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 228

 Score =  268 bits (686), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR +L+IEDD  +A      LK   +   +   G  G+E      ++ II+DL L D  G
Sbjct: 1   MRSVLIIEDDINIAELERDYLKLNGYKADIVHDGMKGLEKAISGIYEVIIVDLMLPDKNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+++A+R  +   P+ ++S  S   DK+RGL  GADDY++KPF+  EL AR+++ + R 
Sbjct: 61  YEIIKAVR-NRFEIPIIVVSAKSEDIDKIRGLDYGADDYLTKPFSPAELAARVKSHINRY 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I    L +N  +  V V G  I LT KEY+++  L+   N   TKE  
Sbjct: 120 ERLKGKNTCSEVINHKGLEINAGSHKVFVNGREIQLTTKEYELLFFLASNPNIVFTKEHI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            N ++      +   + V I K+RKK+   AG   YIET+WG GY  
Sbjct: 180 FNTIWGDDYYGDTATVPVHIQKIRKKIEKDAGNPQYIETLWGTGYRF 226


>gi|331701207|ref|YP_004398166.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128550|gb|AEB73103.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 242

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/238 (27%), Positives = 124/238 (52%), Gaps = 16/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+K+++  +++  + E ++V +   G + ++        +D I LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMQMFFQKEGWDVTIAYDGIEAMDKFNEDPDSWDMITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R    + P+ +L+   S  D+V G + GADDY++KPF+   LVARI+A+ RR
Sbjct: 61  GMEVAKEIRAKSQTVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRR 120

Query: 119 SRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           +    +             + T    +N   + V +   RI  LT KE+++++ L+ +  
Sbjct: 121 AHTETEEESEDEKAKNVFDVQTDHFKLNSSTREVYLDDKRISDLTPKEFELLKTLAQKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++E  L  +++     + + +D  + KLR+K+     G   I+TVWG GY   ++
Sbjct: 181 QVFSREQLLETVWNYEYYGDERTVDAHVKKLRQKIEKV--GTQVIQTVWGVGYKFDDS 236


>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 237

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ++   +   L+   + V +   GE  + L    + D ++LDL L  + G E
Sbjct: 13  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+ +    D+V GL+ GADDY+ KPF+  ELV R+ +I+RR+R 
Sbjct: 73  VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 131

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G L ++LDA+   + G  + LTG+E+ ++  L        ++   L  +
Sbjct: 132 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +      +   + V + +LR+K+         I TVWG GY 
Sbjct: 192 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 232


>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
 gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
          Length = 240

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD+ +   + + LK+E++ +     G+  +E  K Y + D IILD+ +  + G
Sbjct: 11  MKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRLDG 70

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  +R      P+ +LS  S+  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 71  ISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRS 130

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                G A   I  G L++  ++  V    G  I LT  E+ ++ LL+   N   + +  
Sbjct: 131 TITQEGPANEEITIGPLTIKKESHQVTTSDGKEIQLTVLEFGILFLLASHPNRVFSADEI 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++        K + V +  LR K++ A GG+  IETVWG GY + +
Sbjct: 191 FETVWQQESIVSTKTVMVHVSHLRDKIAEATGGEKVIETVWGVGYKIED 239


>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
 gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
 gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
          Length = 239

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  +
Sbjct: 7   ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR    
Sbjct: 67  CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  +
Sbjct: 127 LPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLM 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 187 NLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 225

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +A  +   L+SE F   V   G  G ++     +DAI LD+ L    G+
Sbjct: 1   MRVLIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIILPGKNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR + ++TP+ +L+      D+     +GADD++ KPF+   L+AR+RA+VRR  
Sbjct: 61  TVCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DL ++   K V   G  I LT +E+ ++ELL +     L K++ L  ++ 
Sbjct: 121 VAKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +  +++V+I  LR+K+ +A   K  I TV G GY + ++ +
Sbjct: 181 YAILADENVVEVYISYLRRKV-DAPFDKKLIRTVRGVGYCIDKDPE 225


>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
 gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
           20213]
          Length = 243

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK   +    G          IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241


>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 234

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ++   +   L+   + V +   GE  + L    + D ++LDL L  + G E
Sbjct: 10  RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+ +    D+V GL+ GADDY+ KPF+  ELV R+ +I+RR+R 
Sbjct: 70  VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRART 128

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G L ++LDA+   + G  + LTG+E+ ++  L        ++   L  +
Sbjct: 129 SQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +      +   + V + +LR+K+         I TVWG GY 
Sbjct: 189 WGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYR 229


>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 231

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    +L++ED+ A+A  I + L+   F     + G            D I+LD  L  
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPG 60

Query: 57  IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G  + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA
Sbjct: 61  ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 115 IVRRSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR      Q  +  G+L ++  A  V  QG  I +   E++++  L        ++  
Sbjct: 121 VLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV + +LR+ L  A      IETV G GY L   A
Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLREALGMAGA---LIETVRGAGYRLSAQA 229


>gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
 gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii
           ATCC 33641]
          Length = 239

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLMLPGTDGISI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    T  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLEALDGKKPFIRAVYGMGYRWE 232


>gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
 gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile
           DSM 15176]
          Length = 224

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED   +   +   LK+  ++V     G D ++     E+DA+ILD+ L  + G 
Sbjct: 1   MRILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R A   TPV +L+    I+D+VRGL SGADDY+ KPF  +EL+AR+R ++RR  
Sbjct: 61  EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL V+  A+T    G  I L+ KE+ ++E L+      L++E     +++
Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    ++DV+I  LRKK+ +       I TV   GYVLRE  
Sbjct: 181 YDYEGGSNVVDVYIRYLRKKI-DEGRQPKLIHTVRSVGYVLREEV 224


>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 223

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +    K E FNV     GE+ + +      D  ILD+ +  + G  V
Sbjct: 5   VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    +TP+ +L+  S  EDK+ G + GADDY++KPF+ + L+A+ +A++RR+   
Sbjct: 65  CRNIREVS-NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTL 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++++    L++N  +  V++ G  + L+ KEY ++  LS  +   L+++  L++++  
Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL + A   NYI TV G GY   
Sbjct: 184 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 221


>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 236

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 13  MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+    I+D+V GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 73  QVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 193 YDYEGGSNIIDVYVRYLRKKI-DSQFETKLIHTVGGTGYVLR 233


>gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
 gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA]
          Length = 225

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+   A  +   L    F V +   G DG  L     +D I+LD+ L    G+
Sbjct: 1   MKILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVMLPGADGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R  K   PV  L+    + D+VRG + GADDY+ KPF   EL+ARIR  +R+S 
Sbjct: 61  SVIKMIRQ-KSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GDL +++  + V   G ++ LT +E+ ++ LL+ R    L++    +H++D
Sbjct: 120 GRESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASHVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV I +LR KL +       I TV G GYVL  +
Sbjct: 180 VNFDTDTNVVDVAIRRLRAKL-DEPFDTKLIHTVRGMGYVLDPH 222


>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 229

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +       +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R      PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVRKES-QIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +    I  G L +  D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+ +A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
 gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
           27678]
          Length = 243

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK     + +A G +      IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 241


>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
 gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
           PhoB, OmpR-family [Ralstonia eutropha H16]
          Length = 235

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR    +   P+ +L+     +DKV GL++GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 ++    L ++     V  Q      ++ L   E++++  L        ++   L
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDSGAIKLELGPTEFRLLHFLMTHPERVHSRSQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LR  L    G  N IETV G GY L
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAAL-TPGGYSNMIETVRGSGYRL 229


>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
          Length = 232

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  ELVAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLELVARVKAQLRQYMR 121

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  I             ++++  +    + G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 227

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+++DD A+AH +   LK+E F V V    E  ++  +    D ++LD+ +    
Sbjct: 1   MKASVLIVDDDAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVMMPGRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF++ R +R    + P+  LS   S ++K+RG   G DDYI+K  +  E+VAR++A++RR
Sbjct: 61  GFDLCRHIRETS-NLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRR 119

Query: 119 SRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +    + S+   G L ++  A  V ++G  +  T +E+ ++   +       T+E    
Sbjct: 120 CQKEKPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   +  + + + V I ++R+K+       +YI TV G GY   
Sbjct: 180 RFWG--EIGDRQTVTVHIRRIREKIERDPADPHYIITVRGTGYRFE 223


>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
 gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
 gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
 gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium dentium JCVIHMP022]
          Length = 248

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 14  IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 74  TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK     + +A G +      IET  G GY++R  
Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAP 246


>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
 gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
          Length = 230

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++   +   LK E F+V     GE+G+      ++D  ILD+ L  + G+E+
Sbjct: 8   ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR  + ++PV  LS   +  DKV GL+ G DDY++KPF   EL+AR+RA++RR R  
Sbjct: 68  CRRLRA-RTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRLE 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G +++N    + +     I LT +E++++  L        T+E  L   +
Sbjct: 127 DSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREAW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     E K +D  I +LR KLS A   +N IETV G GY  +
Sbjct: 187 DWEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGYRFK 229


>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 279

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ AL+  + + L+ E + V     G   +   + ++ DA++LD+ L D+ G  
Sbjct: 54  RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGLT 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR   
Sbjct: 114 LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 173

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    +SL+  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 174 ASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDR 233

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  ++++++  LRKK+   AG    I T  G GY+++ 
Sbjct: 234 VWSYDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLIKP 277


>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 229

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 225


>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 247

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 10/233 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DDK L   +   L    ++V     G  G+E+ +   F A+ILD+ +  + GF
Sbjct: 11  IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR      PV +L+ M    D++ GL+ GADDY+ K F+  EL+AR+RA+ RR R
Sbjct: 71  EMLKQLRKQS-DIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR 129

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                        + +  G+L ++L A+T  + G  ++LT  EY ++  L+      L++
Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  L+ +     +   + +DV I  LR+KL        +I+TV   GY+  + 
Sbjct: 190 DQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDP 242


>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 224

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +  ++   L+SE + V     G   +     +   AI+LDL +  + G 
Sbjct: 1   MRVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR     TP+ +L+   ++ D++ GL +GADDY+ KPF+ +EL+AR+RA++RRS 
Sbjct: 61  TMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL+V+  A  V      + L+  EY ++E+L       + + + +  ++ 
Sbjct: 121 PGDDTVLRCADLAVDTGAHRVRRGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               P    ++V++  LR+KL  A G    + TV G GY L E+ 
Sbjct: 181 QDFGPSSNSLEVYVRYLRRKLE-AGGEPRLVHTVRGVGYRLDESP 224


>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 290

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+    + D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS + +I ++V GL  GADDYI KPF+ +EL ARI  I+RR    
Sbjct: 88  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPG 146

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +           Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 SATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPR 206

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 266

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L    F V     G+   E      FD I+LD+ +    GF 
Sbjct: 34  RLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMPGDDGFT 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + P+ +L+  +   D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 94  LCKEVRT-KSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRYEE 152

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFL 175
            A       +I  GD S++L  + ++ Q +    L G ++ +++L   R    L+++   
Sbjct: 153 TAVVPKVAEIIRFGDFSLHLTNRELQYQDNPPEALNGADFNLLKLFLSRPGEVLSRDDLS 212

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +HL      P  + IDV I +LR KL +       I+TV G GY+L     +E+
Sbjct: 213 HHLRGRDASPFDRSIDVQISRLRSKLRDDGKSPQLIKTVRGAGYILTAPVVNES 266


>gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 230

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L+ S++  L +E ++V     G++G +L +   +D IILD+ L    G 
Sbjct: 1   MRILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  ++ TP+ +L+   SI+D+VRGL  GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  G L ++    TVE +G  I LT +EY ++E         +T++M   H+++
Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              E    +IDV++ +LR+K+ +A      + T+ G GY L      +  +
Sbjct: 181 YDFECSSNVIDVYVRRLRRKI-DAPFTTKLLATIRGVGYCLSSPGSKQEAQ 230


>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +  D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Clostridium botulinum H04402 065]
          Length = 229

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + L ++  NVY    G + +++ K  + D IILD+ +  + G + 
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R   ++ P+ ILS      DK+ GL  GADDY+ KPF+  EL+ARI++ +RR +  
Sbjct: 66  CMKIREM-LNVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYKQL 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   +LS+N+    V ++  +I LT  E++++ LL+  +    +     
Sbjct: 125 NNNFKNTTKEVIQIDELSINISNHEVFLRDKQIKLTPYEFKILVLLAQNRGRVFSIASIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++       + + V I ++RKK+       NYI+TVWG GY + 
Sbjct: 185 ESVWEEDYVASDRTVTVHIRRIRKKIG---KEYNYIKTVWGVGYKIE 228


>gi|309812926|ref|ZP_07706654.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432998|gb|EFP56902.1| response regulator receiver domain protein [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++   L  E F V V   G  G  L     +D I+LD+ L    G+
Sbjct: 1   MRVLLVEDEKHLADAVASGLGREGFVVDVAGDGITGQWLGAQNPYDVIVLDIMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR   +  PV +L+      D+V     GADDY++KPF+   LVAR+RA+ RR  
Sbjct: 61  DVLAGLRRDGVWAPVLMLTAKDGDLDQVDAFDLGADDYLTKPFSFPVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G L+++     V      I LT KE+ ++  L+ R     +K   L++++ 
Sbjct: 121 PERPTVLDVGGLTIDPARHVVMRGDVEISLTAKEFALLLYLARRGGEPASKPEILDNVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E    +++V++  LR+K+ +A  G   +ETV G GY L E A+
Sbjct: 181 ADFEGNDNVVEVYVGYLRRKI-DAPFGTASLETVRGHGYRLVEAAE 225


>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 274

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L+S+ F       GE   ++ +    D ++LD+ L    G E+
Sbjct: 50  IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGESGIEI 109

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ +R        PV +L+  +S  D V+GL  GADDY++KPF   EL++RIRA++RRS 
Sbjct: 110 LKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRRSH 169

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++V G ++++     V   G  + LT KE++++  L +     L +E  +  +
Sbjct: 170 RVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQREQIMESV 229

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + ID+ I  LR+KL     G   I+T+ G GY L E 
Sbjct: 230 WGFTYAGESRTIDMHIKSLRQKLGE---GGQIIKTIRGVGYRLDEP 272


>gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016]
 gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score =  268 bits (686), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A   +  L+ E F V +   G  G+      +FD +ILD+ L  I G+ 
Sbjct: 3   KILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIMLPKINGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR++   K   PV ++S      DK++G   GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 63  ILRSI-QDKKDIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    + ++   L +  D++ V V G  I L  KE+ ++  ++   N    +E   
Sbjct: 122 IKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNREELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I ++R+K+        YIETVWG GY LR
Sbjct: 182 EKIWGLGSMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRLR 228


>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
 gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
          Length = 227

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   ++  L  E + V     G + +E+     +   IILD+ +  + G
Sbjct: 4   IKILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPRMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R +R +    P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR+
Sbjct: 64  WQVCREVRQSS-KVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRA 122

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I  G + ++  A  V++ G  I L+ KE++++      +   L++E  LN++
Sbjct: 123 NVLGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + + ID  + KLR KL       NYI+T+WG GY    +
Sbjct: 183 WDYDYFGDARTIDTHVKKLRSKLGEKG---NYIKTIWGMGYKFEVD 225


>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
 gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
           albensis VL426]
          Length = 240

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSSEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 268

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY + + 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRMGQP 268


>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 248

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L+ E + V     G   +   +  + D I+LD+ L D  G E
Sbjct: 18  RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R    + PV  L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS  
Sbjct: 78  VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 137

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   SL+  GDL ++ D+  V      I LT  E++++  L       L+K   L+ +
Sbjct: 138 SEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILDRV 197

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     +  I++++I  LR+K+    G +  I T+ G GYVL+  A
Sbjct: 198 WNYDFGGQANIVELYISYLRRKI--DKGREPMIHTMRGVGYVLKPVA 242


>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
          Length = 239

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L++   
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRYKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 246

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+V +   G D +   +  + D +ILDL L  I G E
Sbjct: 13  RALVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 73  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRT 131

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                              G LS+++  + V +    + LT  E+ ++  LS R     +
Sbjct: 132 VATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFS 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   L  ++         ++DV I  LR+KLS+   G  Y+ TV G GY +
Sbjct: 192 RRQLLEAVWGDSWGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGYRM 242


>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
 gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           frederiksenii ATCC 33641]
          Length = 239

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDKMVQTVRGTGYRF 235


>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 232

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 6   ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 66  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  +Y ++ L++  KN   T E   
Sbjct: 125 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 185 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 232


>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 223

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   +    K E FNV     GE+ + +      D  ILD+ +  + G  V
Sbjct: 5   VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    +TP+ +L+  S  EDK+ G + GADDY++KPF+ + L+A+ +A++RR+   
Sbjct: 65  CRNIREVS-NTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + ++++    L++N  +  V++ G  + L+ KEY ++  LS  +   L+++  L++++  
Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL + A   NYI TV G GY   
Sbjct: 184 DYFGDIRTVDTNIKRLREKLLDKA---NYIATVRGSGYKFE 221


>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 248

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    + V+    G + +++    E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   +L V+ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 HVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli
           E24377A]
 gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1]
 gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str.
           REL606]
 gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9]
 gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9]
 gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A]
 gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1]
 gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli IAI1]
 gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)]
 gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli B str. REL606]
 gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli BL21(DE3)]
 gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088]
 gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Escherichia coli W]
 gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR
           [Escherichia coli EC4100B]
 gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120]
 gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489]
 gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271]
 gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591]
 gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9]
          Length = 227

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 248

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/219 (33%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F  ++   G+  +E  + Y  D ++LDL L    G +
Sbjct: 27  RILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLMLPGKDGID 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 87  VCKEIRAESG-VPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            AQ  +  GDL++++    V   G RI LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWGY 205

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 206 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 244


>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
 gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
           49176]
          Length = 232

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 118/230 (51%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +      E +N  +   GE+ ++L       A++LD+ +  + G+EV
Sbjct: 4   ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDGYEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +++      +K+ GL  GADDYI KPF+  E++AR+RA++RR    
Sbjct: 64  CRKIRA-KSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVAP 122

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++ I   +L +NLD  ++ + G +I LT KE + +  L+   N   T++  L
Sbjct: 123 ESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + L+      + + +D  I +LR KL         I+T+WG GY    +A
Sbjct: 183 DSLWGFDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGYKFDIDA 232


>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 236

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G D +     +  D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I  GDL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LLDDDAVIRVGDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GYVLR
Sbjct: 189 EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 231


>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
 gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
 gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
 gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
 gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
 gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 225

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
 gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
           micronuciformis F0359]
          Length = 226

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 112/223 (50%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +   +   L+ E + V     G+  +++    + D ++LD+ +    G+ 
Sbjct: 3   RILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMPGYDGWT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++      D++     G DDYI+KPF+ + LVA+++A++RR  G
Sbjct: 63  VCREIRRTS-TVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHG 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +    ++++ +A  V + G    L+  EY+++  L       L++   LN 
Sbjct: 122 EGEENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +++     +++ +D  I +LR KL N      YI+TV G GY 
Sbjct: 182 VWNYEYYGDLRTVDTHINRLRIKLGNRGS---YIQTVRGYGYR 221


>gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   + + L  E F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 16  ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI K F+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q         I    L ++  ++TV + G  I+LT  EY ++ L++  KN   T E   
Sbjct: 135 NQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
          Length = 223

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ L +E F V     G + +E  K    D IILD+ +  + G   
Sbjct: 7   ILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIMMPKLDGIRT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K   P+ +LS  S   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR+   
Sbjct: 67  CLKIREEK-KMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRTTSF 125

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R      I    L +N   + V V    + LT +E++++++L+      L+ E    
Sbjct: 126 NEPREENDDEICIDGLVINTANREVFVDDKFVRLTPREFEILKVLATNIGRVLSTEQIYE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++D         + V I  +R+K+        YI+ VWG GY +
Sbjct: 186 NVWDEPFFNSDNTVAVHIRNIREKIEINPKEPKYIKLVWGVGYKI 230


>gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 234

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   IE+ LK++ +NVY    G +G+E+ +       I+D+ +  + G  +
Sbjct: 6   VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  LR      PV +L+  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR    
Sbjct: 66  VMKLRE-NYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      ++   G L +N D K V + G  I +T  E+++++LL        + E 
Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++  +      + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYEKVWN-EEAINTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234


>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
 gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
          Length = 239

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESIVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 269

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   ++V     GE+ +EL      D ++LD+ L  + GF V
Sbjct: 27  ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDGFAV 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  P+  LS + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 87  CRRIRGESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 145

Query: 123 AQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           A S            ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 146 ASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVVP 205

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256


>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
 gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 248

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +EL      D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A        +I   DL ++ + + V     RI LTG E+ ++ELL  R      +   L 
Sbjct: 130 AIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis]
          Length = 226

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD +++  ++  L  E F +     GE+GI L +   +D ++LD+ L  + G + L
Sbjct: 1   MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R  K + PV ++S      DK  GL  GADDYI+KPF+  EL AR++A +RR+  ++
Sbjct: 61  KIIRE-KSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYS 119

Query: 124 QSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I    L++++D  +V   G  + LT  E+Q++ L +       TK+     
Sbjct: 120 AEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYRS 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 180 VWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225


>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 224

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 129/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E+     +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL + ++++T+      I LT KE++++ +     N  LT+++ LN ++
Sbjct: 123 ENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 710

 Score =  267 bits (685), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 1/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++E+D+  A ++   L ++ F V         +EL +  E+D I+LD+ L D  G 
Sbjct: 1   MKLLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +L+G     D++ G ++GADDYI+KP+   EL+ARIRA++RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY+++EL          +   L+ +  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRQIFDRRTLLDRICS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             + P  + +   I  LR+KL  A    + IET++G GY L+ +  +E  +  E 
Sbjct: 181 IDECPGEEAVTTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK-SVPEEREQGSEQ 234



 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +E  L+   F V          +  +    D ++LD+ +    G E
Sbjct: 592 RLLIVDDDPALLSMLEAQLQLWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 651

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + ++        PV +LS  +  +   R L +GADDYI KP  + +L+ RI
Sbjct: 652 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 704



 Score = 73.4 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +LLI+DD  L   ++    + + ++          +  ++   DAIILDL   +    G 
Sbjct: 468 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLIFPNTTESGL 527

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +L  L+    + PV +L+G+  +  +V   + GA+ ++ KP    E+   +  ++ R
Sbjct: 528 TLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHR 585


>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
 gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           rohdei ATCC 43380]
          Length = 239

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235


>gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis
           R1]
          Length = 222

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   LK+  +       GE+   L     +DA+ILD+GL  + G 
Sbjct: 1   MRILIVEDDRDLNDQLAEALKNAGYVFDCVFDGEEAYFLGSTEPYDAVILDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ 
Sbjct: 61  RVVEKWRQEGYSMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHIEEVIARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++     V V G  I LT  E++++  L    +  +++   + HLYD
Sbjct: 121 GHATNSLSCGSVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDQIVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKKL         IETV G GY ++
Sbjct: 181 QDFDKDSNTIEVFVGRLRKKLGVD-----LIETVRGMGYRVK 217


>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 227

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 90/221 (40%), Positives = 137/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR    + PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A+VRR+ 
Sbjct: 61  ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++ ++  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL +  G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DPEGELKPIETVRGRGYRF 220


>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 239

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSIDSKVIEFGDFRLNLGTREMFRGDEPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   + ++
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGQE 238


>gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  I+  L  + F V V   G + + +   + +DAI+LD+ L  + GF
Sbjct: 7   MRLLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVMLPGLNGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR +   TP+ +L+ M    D+V+ L SGADDY++KPF+   L+AR+RA+VRR  
Sbjct: 67  AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  GDL V+  A      G  I LT KE+ ++ LL+ R    +TK   L H +D
Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++V++  LR+K+ +A      + TV G GY+L 
Sbjct: 187 FAFEGDPNIVEVYVSALRRKI-DAPFAVRTLTTVRGSGYLLE 227


>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 225

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A++  +   L+ E ++V V + G + +E  K    D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAK-DNPDLVLLDLGLPKVDGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+  
Sbjct: 62  VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRT-- 119

Query: 122 HAQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +  TG+L  ++ D +    +G  + LT KE+ ++ +L   +   + +E  +  ++D
Sbjct: 120 -PTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWD 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                  K +D+ I  LR+KL + A    YI TV G G+       D
Sbjct: 179 TAWFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFERPKPD 225


>gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 238

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   +E+ +K  N  V   + G   +E  +  +FD I+LDL +  + G E
Sbjct: 9   QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K +TP+ +++  +   DKV GL+ GADDYI+KPF+  EL AR +A++RRS  
Sbjct: 69  VCRELRKTK-NTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         +  GDL VN++ + V ++G +I L+ KE+ ++ LL+     + ++   
Sbjct: 128 ANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSEL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++          ++  I +LR K+    G   YI T WG GY   E+
Sbjct: 188 LDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237


>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
 gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
          Length = 237

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    + ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L +      YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 225

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  L   +   L++E F V V   G DG+ + + + +DAI+LD+ +  + G+
Sbjct: 1   MRILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A+  TP+ +L+      D+V  L +GADD++SKPF+   LVAR+R++VRR  
Sbjct: 61  TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  A+ V      I LT +E+ ++E L       ++K   L++++D
Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +  I++V++  LR K+ +   G+  IET+ G GY L
Sbjct: 181 GDFEGDPNIVEVYVRHLRNKV-DRPFGRASIETLRGAGYRL 220


>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
 gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. AzwK-3b]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+++ F V   + GE+ + L      D I+LD  L ++ G EV
Sbjct: 8   VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA++RRSR
Sbjct: 68  CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQHGGG-DPLRTVRGAGYAL 228


>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 239

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G   +EL      D +ILD+ L DI GFE
Sbjct: 6   RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R LR      PV  LS  ++  DK+ GL  G DDY++KPF  +EL+AR+RA++RR+  
Sbjct: 66  ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S +   D+ ++ DA  V   G  I L+  E+ ++       N  L++   
Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++      E  I+D ++  LR+KL     G + I T  G GYVLR
Sbjct: 186 LDAVWSYDYGGESTIVDQYVSYLRRKLGRH--GPSLIHTQRGFGYVLR 231


>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
 gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
           HTCC2594]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E    +E + V  T  G++ + +      D +ILD  +    G E
Sbjct: 5   KLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL +GADDY+ KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  V  +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + E++ +DV I +LRK + +  G  + I TV   GY L  N
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAI-DVPGADDPIRTVRSAGYALETN 229


>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 231

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   I + L+ + F V     G + +   + +    ++LD+ L D+ GFE
Sbjct: 7   RVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R L   +   P+  L+   + +D+VRGL  G DDY++KPF+ EELVARIR I+RR+  
Sbjct: 67  VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGM 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +V  DL ++ D + V   G  + LT  EY+++  L L     LT+   L H++
Sbjct: 127 AEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + ++++ ++  +RKKL   A G   I+TV G GY LR
Sbjct: 187 SYDFGGDARVLETYVSYVRKKL--DAHGPPLIQTVRGVGYALR 227


>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 240

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I   L+   +     +  E  + +      D I+LD  L ++ G +
Sbjct: 4   KILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMTGID 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R LR  + +   P+ +L+  +   DKV GL+ GADDY++KPF+  EL+ARI A++RR 
Sbjct: 64  FARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRRL 123

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +     L ++     V      I L   EY+++  +      T ++   L+ +
Sbjct: 124 IPEASAQVVEIHGLRLDPVNHRVTDGNKEIELGPTEYRLLHFMMSHTERTYSRSQLLDRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G  ++I+TV G GY  
Sbjct: 184 WGDHVFVEERTVDVHIRRLRKAL-QWSGKDSWIQTVRGAGYRF 225


>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
 gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 241

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQTP 126

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  G+ S+NL  + +      I LT  E+ ++++L       L+++  
Sbjct: 127 EVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVFVPDG 237


>gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 241

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  + + I   L S ++   V + GEDG++  K    D +ILDL L DI G
Sbjct: 1   MKNILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSLPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R++R +  STP+ ILS  +   D++ GL+ GADDYI+KPF+  EL  R+    RR 
Sbjct: 61  MEICRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120

Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          I+ G L ++   + V +  + I+++ KE+ +++LL+       ++
Sbjct: 121 DKKIGIKPNVGQAGEIIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           EM L  ++    +   ++ID  I ++R KL   +    +IET+WG GY   +N
Sbjct: 181 EMILESVWGVEWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
 gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
           baltica OS145]
          Length = 228

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +++   +        + G+        D ++LD  L    G +
Sbjct: 4   RILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + ++      + P+ +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR+RA+ RR 
Sbjct: 64  LAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +    L ++  +  +      I +   E++++           ++E  L+ +
Sbjct: 124 APTVLDEPLEIEGLKLDPVSHRISTHDRSIDMGPTEFKLLHFFMTHPERVYSREQLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALHEH-GYDRLIQTVRGVGYRF 225


>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
 gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
 gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
 gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
 gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
 gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
          Length = 240

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVV 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 235

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   + + LK + + V     G   +++ + ++ D ++LD+ +  + GF 
Sbjct: 9   KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR   I  P   LS   S+EDKV GL  G DDY++KPF+ EE+VAR+  ++RRS  
Sbjct: 69  LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + IV  DL ++ +   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +V +++ ++  LR+K+    G K  I T+ G GYV+RE 
Sbjct: 189 VWSYDFGGDVNVVESYVSYLRRKV--DTGPKRLIHTLRGVGYVMREP 233


>gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 226

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 132/225 (58%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+       +TD G+DG+ L    +FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    +TPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRG 120

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q+ +V  DL ++L ++TV   G +I L  +E++++E L+      +T+ M L  
Sbjct: 121 RTEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+    G    I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKVDKPFGMP-LIHTIRNAGYMLR 224


>gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 230

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  +   L  E F V V   G DG+ L    ++D I+LD  L  I G 
Sbjct: 1   MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL ALR  K  TPV +L+    +ED+V+GLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 61  AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +   DL ++L  +     G RI LT KE+ ++ LL  R+   L++   
Sbjct: 120 PSVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++D   + E  +++V + +LR KL +    K  + TV G GYVL 
Sbjct: 180 ASQVWDMNFDSETNVVEVAVRRLRLKL-DQPFEKPLLHTVRGMGYVLE 226


>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
 gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Hyphomonas neptunium ATCC 15444]
          Length = 228

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+ ED+ A++  +   LK E+++V +   GE+ + +      D ++LD  L  + 
Sbjct: 1   MKPYVLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVS 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R +R      + P+ +L+      D++RGL +GADDY++KPF+  EL+AR+RA++
Sbjct: 61  GIEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVL 120

Query: 117 RRSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR R G  +  I  GD+ ++  A  V      IHL   E+++++          ++E  L
Sbjct: 121 RRIRPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      E + +DV + +LRK L   +GG++ I TV   GY LR +
Sbjct: 181 DTVWGSDVYVEARTVDVHVGRLRKALRQ-SGGEDPIRTVRSAGYALRAD 228


>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CPHL_A]
          Length = 253

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGFE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 84  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246


>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
 gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
          Length = 247

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 1/231 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  +   L  E + V V      G+       +DA++LD+ L   PGFE
Sbjct: 18  RVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGFE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR   I  PV +L+   +++D+VRGL SGADDY++KPF+ EEL+AR+RA+ RR   
Sbjct: 78  LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGPL 137

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   +V G+L ++ +          ++LT KE+ ++E    +    LT+E+ L + +D 
Sbjct: 138 VSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWDL 197

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             E    ++DV +  LR+K+    G    IETV G GY LR +A     + 
Sbjct: 198 AFEANSNVVDVHVRALREKIDRRFGV-RSIETVRGVGYRLRADAGRRAAQP 247


>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
 gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           intermedia ATCC 29909]
          Length = 239

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEID-GHDRMVQTVRGTGYRF 235


>gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 242

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDIP 58
           RILL+EDDK++  ++   L SE F V     G   ++        + D IILDL L  + 
Sbjct: 13  RILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R  +  TP+ ILS   +  D+V GL+ GADDY++KPF   EL+AR RA++RR
Sbjct: 73  GLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRR 132

Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S+ +      +++++    + + L+   V      I L+ KE++++EL         +++
Sbjct: 133 SKRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVWSRD 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L  +++     + K +DV +  LR+KL        +++TV G GY  
Sbjct: 193 LILEKIWEIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241


>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 233

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  +A  I+L ++   +   V   GE G+E       D I LD+ L  I G+E+
Sbjct: 8   VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +R      P+ +L+G    +DK++GL  GADDY+ KPF+  ELVAR++A++RR+   
Sbjct: 68  CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    L V+            I +  KE  ++  L+   N   T++  L+ ++ 
Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E + + IDV I ++R+KL+ A   K  I+T+ G GY   E   +
Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEA-DAKWTIKTIRGVGYKFLEKEHE 233


>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
           syringae 642]
          Length = 220

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL  GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    + ++   + V      + LT KEYQ++  L       +T+E  +  LY 
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   ++V I  LRKK          I T+ G GY++ E +
Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGVGYLVEERS 220


>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++   +++  K  NF V     GE+G+   +    D ++LD+ L  I GF+
Sbjct: 4   KVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGISGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+      DK++GL+ GADDY+ KPFN  EL+ R ++++RR   
Sbjct: 64  VCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRRLVG 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    +  + +G   + L ++ V  +   I LT KE+ ++++    KN   T++  L+
Sbjct: 124 KGTSDSKEDTLKSGVFKLELYSQRVFKEDKEILLTPKEFFLLKIFLENKNKAFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I +LR K+ +      +IETVWG GY  R+ 
Sbjct: 184 KIWGYDYMGDTKIVDVNIRRLRSKIEDKDSHGMFIETVWGIGYRWRKE 231


>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
 gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
          Length = 234

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A+ I+  L  EN++V  +  G++G+E  K   +D IILD+ L +I GF 
Sbjct: 4   KILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEIDGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R +G
Sbjct: 64  VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +             L++  D   V +    I LT KE+ ++ +L+  ++   TK+   
Sbjct: 123 YNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++++  +      I V +  LR+KL +      YI+TVWG GY  
Sbjct: 183 ENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
          Length = 220

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I   L  E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ LI    +S+N   + V   G  + LT KEYQ++  L       +T++     LY 
Sbjct: 121 GRAQMLIEHAGISLNPGTQQVSYLGQPVVLTPKEYQLLHELLSPPGRVMTRDHLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   ++V I  LRKK S        I T+ G GY++ E
Sbjct: 181 WNEEAESNTLEVHIHHLRKKFSTD-----LIRTIRGVGYLVEE 218


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 128/227 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A+++  +L ++N+ V V   G+   +  + Y++D I+LD+ L  + G 
Sbjct: 1   MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R   +  P+ +++G +S  +K  GL +GADDY+ KPF+ EELVARIRA++RR  
Sbjct: 61  SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++ +G L ++  +       + + LT KE+ ++EL         +  M L HL+ 
Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             D P+ + +   I  LR+KL       + +ETV+G GY L+   +D
Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEED 227



 Score =  103 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++ +L          +      E  +    D +ILD+ L  I G E
Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R        P+  L+  S  E   +    GADD++SKP    ELV RI   + R 
Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLERM 516

Query: 120 R 120
           +
Sbjct: 517 K 517


>gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 239

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 14/234 (5%)

Query: 1   MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           MR     +L++ED+  +A+ I   L    F+ ++   G + I   +  + D IILDL L 
Sbjct: 1   MRNRNITVLIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           D  G E+ R +R    +  + ILS   S  DKV GL  GADDY++KPF+  ELVARI A 
Sbjct: 61  DCDGIEICRKIRE-NSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAH 119

Query: 116 VRRSRGHAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           +RR     Q         +I   ++ +N            I L+ KE++++  L+  +N 
Sbjct: 120 LRRQDRWLQHSGGQMGVDVIHIDNMVINKQEYIFLRDSKPIPLSAKEFELLFFLAKNRNQ 179

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +K   L+ ++      +   I V+I +LR+K+  +     Y++TVWG GY  
Sbjct: 180 VFSKGQLLDAVWGYETYGDENTITVYIRRLREKIEVSPSHPVYLQTVWGVGYKF 233


>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 276

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G E
Sbjct: 54  RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R 
Sbjct: 114 VCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 172

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ +
Sbjct: 173 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 232

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + +++DV I  LR+KL        YI+TV G GY + E 
Sbjct: 233 WDPAWVGDERLVDVHIKNLRRKLDADPA--RYIDTVRGVGYRMAEQ 276


>gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory
           system with CusS [Escherichia coli O111:H- str. 11128]
 gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180]
          Length = 227

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY  KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Gemmata obscuriglobus UQM
           2246]
          Length = 224

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD   A  +   L+   F V +   G+DG+ L     ++ ++LD+ L    G+
Sbjct: 1   MKVLIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A   TPV  L+   ++ D+VRGL+ GADDY+ KPF   E +AR+R+++RR  
Sbjct: 61  SVLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V+         G ++ LT KE+ +I L++ R    L++ +    ++D
Sbjct: 121 DRRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E  ++DV + +LR KL +       I TV G GYVL E  
Sbjct: 181 MNFDSESNVVDVHVRRLRAKL-DDPYPTKLIHTVRGVGYVLEERG 224


>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 226

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++L+  +  +L+ E F V + D G   +   + +  D ++LDL L   PG E
Sbjct: 3   RILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R+     PV +L+   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VIRQIRL-NSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++  G + ++++   V V+   + +  KE++++E+L       LT+   ++ +
Sbjct: 122 GEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+         + TV G GY   
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGYKFV 225


>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 240

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    ++V+   LG++G++L   K  + D ++LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            +V + +R  K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q       +  G LSV  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 IRRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|49477096|ref|YP_035355.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196037687|ref|ZP_03104998.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218902316|ref|YP_002450150.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228926259|ref|ZP_04089333.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120744|ref|ZP_04249987.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|254725504|ref|ZP_05187286.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|49328652|gb|AAT59298.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|196031929|gb|EDX70525.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218536850|gb|ACK89248.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|228662749|gb|EEL18346.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833356|gb|EEM78919.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 234

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 240

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LTG E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  IIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    L ++  +  V  +   + +   E++++           ++E  LN++
Sbjct: 124 SPMVMEDIIEMDGLVLDSTSHRVTSRDKALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGANVYVEDRTVDVHIRRLRKVLE-IGGHDKMVQTVRGTGYRF 225


>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 236

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ALA  ++  L++E F+V ++  G++          D IILD  L  + G E
Sbjct: 4   KILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLSGIE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  K   + P+ +L+      D++RGL  GADDY+ KPF+  EL+AR++AI+RR+
Sbjct: 64  LCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+ ++ +   V   G  + L   E++++E L        ++   L+ +
Sbjct: 124 APERISQTLEVEDIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LRK + N    K+ I TV G GY L E
Sbjct: 184 WGRDVYVDERTVDVHIGRLRKAI-NRGKEKDPIRTVRGAGYALGE 227


>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 233

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 129/231 (55%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +  +  IILD+ + D+ GF
Sbjct: 4   VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQKIRE-KNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYT 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + ++  D+ ++   +TV VQ   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++    + +   +  FI KLRKK+        YI+TV G GY   + A
Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233


>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
 gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
 gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ +       + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R          +  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 RMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
 gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196]
          Length = 229

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V + G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R+K+      K+YIET+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ L   I   L  E + V     G D +      E+D I+ D+ L  + GF
Sbjct: 1   MRILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+L+ +R   I TPV +L+    IED+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S  +A ++    +L+VN ++  V      I L+ +E+ ++E +   K   L++E    H
Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   E    +IDV+I  LR+K+ +       I T+ G GYVL+
Sbjct: 181 IWNYDYEGGTNVIDVYIRYLRRKI-DKGFEPKLIHTIRGIGYVLK 224


>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 225

 Score =  267 bits (685), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    F V + + G DG+ + +  ++D IILD+ L  + G+
Sbjct: 1   MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++++R +K  TPV  L+ +  + D+VRG + GADDY+ KPF   EL+ARIR  +R+S 
Sbjct: 61  TVIKSIR-SKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V     RI LT +E+ M+ LL  R+   L++    + ++D
Sbjct: 120 SKESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  ++DV I +LR K+ +    +  I TV G GYVL   
Sbjct: 180 VNFDTDTNVVDVAIRRLRSKV-DDPFDQKLIHTVRGMGYVLDPE 222


>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
 gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
           Tu6071]
          Length = 250

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G+  +        D I+LD+ L D  GF +
Sbjct: 16  VLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGFRL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+   
Sbjct: 76  TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 135

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        +    LS++     V   G  + L+  E++++          L K   L  
Sbjct: 136 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++      + +I+D ++  LR+KL +  G    + TV G GY LR   +DE 
Sbjct: 196 VWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLRLP-RDEP 245


>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
 gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           ruckeri ATCC 29473]
          Length = 234

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 9   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 68

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 69  FIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 128

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   E++++           ++E  LN++
Sbjct: 129 SPMAVEEVIEMQGLSLDPSSHRVMAKEKALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 189 WGTNVYVEDRTVDVHIRRLRKALEPE-GHDKMVQTVRGTGYRF 230


>gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
 gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC
           700641]
          Length = 224

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 86/223 (38%), Positives = 137/223 (61%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  L  SI  +LK++ ++V     G++ ++  +  ++D II D+ +  + G 
Sbjct: 1   MKVLVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL  LR  +I TPV +L+   S+EDKV GL +GADDY+ KPF  +EL+ARIR ++RR +
Sbjct: 61  GVLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  +L+  GD S++L  KT++ +G  + LT KEY+++E L    N  L++E    H++
Sbjct: 121 RENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     E  IIDV +  +RKKL    G  + I+T  G GYV +
Sbjct: 181 DFDYVGESNIIDVLVKNIRKKL----GNPSIIQTKRGMGYVFK 219


>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
 gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
          Length = 243

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I + L  E+F V+    GE+ +E+         ILD+ +  + G E+
Sbjct: 17  ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 77  CRRIRE-KYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 135

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I    L ++  ++ V++ G  I++T  EY ++ L++  KN   T E   
Sbjct: 136 NQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 196 ESVWNERAYESNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKIGD 243


>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
 gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
           bercovieri ATCC 43970]
          Length = 239

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 14  RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 73

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 74  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 133

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 134 SPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 193

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 194 WGTNVYVEDRTVDVHIRRLRKALEVD-GHDRMVQTVRGTGYRF 235


>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
 gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           str. Lens]
 gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
           130b]
          Length = 226

 Score =  267 bits (685), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E FNV     GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIRE-HLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   ++ V+   + V + G  + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMF 224


>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
 gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L+ E + V     G + +++  +  +   IILD+ +  + G+
Sbjct: 14  KILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPHMDGW 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R +R      P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 74  QTCREIRKES-KVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTN 132

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   ++  D + ++  A  V++ G  I L+ KE++++      +   L++E  LN+++
Sbjct: 133 ALASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +     +YI+T+WG GY   
Sbjct: 193 NYDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFE 232


>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 237

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL +GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVE-VQGH-----RIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 ++    L ++     V  V        ++ L   E++++  L        ++  
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L+   G  + IETV G GY L  N 
Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAP-GGYSSMIETVRGSGYRLARNP 235


>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 224

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++   ++  L  E F V     GE+ +++ +    D +ILD+ +  + G E
Sbjct: 3   RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A    PV  L+   +  D+VRGL++GADDY+ KPF  E LVAR+RA++RR + 
Sbjct: 63  VLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL ++    T       IHLT  E++++    L     L K+  L  ++  
Sbjct: 123 ERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  +++V++ +LR+KL  A G    I TV G GYVLRE
Sbjct: 183 DFGGNANVLEVYVKQLRQKLE-AEGEPRLIHTVRGVGYVLRE 223


>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 269

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+ +L   +++ L+ E + +   + G   +   + ++ DA++LD+ L D+ G 
Sbjct: 43  IRVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGL 102

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL  LR      PV  L+   S++D++ GL +G DDY++KPF+ EE+VAR+R ++RRS 
Sbjct: 103 QVLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRRST 162

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL+++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 163 LVVSDTVDPVIRVGDLTLDEDSHEVARAGDPIELTATEFELLRYLMRNPRRVLSKLQILD 222

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      +  +++++I  LR+K+   AG    I TV G GY+L+
Sbjct: 223 RVWSYDFGGKSSVVEIYISYLRRKI--DAGRNPMIHTVRGSGYMLK 266


>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 234

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ L   +   L++E F V     G++     +    D ++LD  +  + G E
Sbjct: 4   RILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   P+ +L+      D+VRGL +GADDYI KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  V  +G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LRK + N     + I TV G GY   E
Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAI-NRPRRPDPIRTVRGSGYSFDE 227


>gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 235

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +A  IE +L      V     G  G+ + +  E+DA+I+D  L +  G  
Sbjct: 11  KVLVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEKDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+  R A  +TP   LS +  +++KV+GL++GA+DY+ KPF   EL AR+ A+ RR   
Sbjct: 71  LLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTN 130

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GDL +NL  + V   G +I L  +E++++E L       +T+ M L  ++
Sbjct: 131 AEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV I +LR K+         ++TV G GY L+   
Sbjct: 191 DYNFDPQTNVIDVHISRLRAKIDKEFAEP-LLQTVRGAGYRLQSQG 235


>gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 251

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 119/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  I   L+ E F   V   G D I + +  + D +ILDLGL  I G E
Sbjct: 16  RALVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRQIRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRV 134

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     +       G LS+++ A+ V + G  I LT  E+ ++E LS      L++
Sbjct: 135 LHTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  + DG       ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 195 RQLIEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGYRM 244


>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
 gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
 gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
 gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
 gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
 gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
 gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
 gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
 gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
 gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
           12129(1)]
 gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
 gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
 gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
           330286]
 gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
           MJ-1236]
 gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
 gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
           101]
 gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
           91/1]
 gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
           5369-93]
 gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
           LMA3894-4]
          Length = 240

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 241

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + + V       +          D ++LD+ +    G  
Sbjct: 5   KILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGEDGLA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+R LR      PV +L+      D++ GL+ GADDY+ KPFN  ELVARI++++RR   
Sbjct: 65  VVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHNA 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 R      I  G  +++L  + +  Q   + LT  EY ++ +L+      +T+E 
Sbjct: 125 TPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTREQ 184

Query: 174 FLNHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +      G  E   + IDV I +LR+ L    GG  YI+TVWG GYV   + 
Sbjct: 185 LMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVFVPDG 237


>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
           10507]
          Length = 222

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   I   ++      +  D G D + + K    D +ILD+ + ++ GF V
Sbjct: 4   ILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIMMPNLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R    + P+ +L+   S +DK++G   GADDY++KPF+ + L+A+  A++RRS   
Sbjct: 64  CKIAREMS-NLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSLL 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G +S+   +  V V G  I LT KEY+++    +      ++E  LN ++   
Sbjct: 123 PADTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWGYD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +D  I  LR+KL +      +I T+   GY   
Sbjct: 183 FEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 219


>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 223

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I  +LK+  + V V   G  GIE+ + Y+FD IILD+ L  I GF 
Sbjct: 4   KILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K   P+ +L+ +   +D+++G +   DDYI+KPF+   L+ R+ A++RR   
Sbjct: 64  VCEIIR-KKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRYSN 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     ++ +V  ++ +        V  + I LT KE+Q++E L        T+   L+ 
Sbjct: 123 NPSKNSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDM 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 IWGYDYFGDTRVIDTHIKNLRQKL-----NVDYIKTIRGVGYKIEK 223


>gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium
           resistens DSM 45100]
          Length = 224

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L+ E F   V   G + +   + +  D I+LD+ L  + G +
Sbjct: 4   KILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    + P+ +L+  +   D   GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRAIREDS-TVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKELVARVRARLRRNTD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    L++++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 EKPEKLEISGLTIDVSGHQVTRGDEVIPLTPIEFDLLLTLASKPRQVFTREELLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V I +LR K+         I+TV G GY 
Sbjct: 183 RKSSDTRLVNVHIQRLRSKIEVDPDDPRIIQTVRGVGYK 221


>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
 gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V  +  GE+ +   K  +FD I++D+ +  I GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    +TP+  L+   + +DK++G  SG DDYI+KPF+  EL  R+ AI+RRS  
Sbjct: 64  AIKVIRKF-TNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I   DL +NL   T+      I LT KE+ ++ LL+  K            
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KL++      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 236

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ LKSE +       GE+ + + +    D +ILD+ +  + G + 
Sbjct: 7   ILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVMMPKLNGIDT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  +   P+ +LS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 67  CLKIREER-EMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125

Query: 123 AQSLIVTGDLSV----------NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
               +                 NL+   V +  + + LT  E+ ++ LLS  +    + E
Sbjct: 126 NTKHMEDEKEEESIIEIDELIINLETHEVILSNNLVKLTPTEFDILLLLSKNRGKVFSIE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++         + V I K+R+K+ +      +I+TVWG GY + +
Sbjct: 186 NIYESVWNQEFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236


>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 277

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 17/240 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE+ +EL      D ++LD+ L  + GF V
Sbjct: 34  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDGFAV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 94  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 152

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  G+L V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 153 SASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 212

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226
              L  L+    R   +++++DV++ +LR KL         I TV G GY    + +NA 
Sbjct: 213 AEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRMGDNAP 272


>gi|222094843|ref|YP_002528903.1| response regulator [Bacillus cereus Q1]
 gi|221238901|gb|ACM11611.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIR-KKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 226

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S P   L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVRGMGYRLQ 219


>gi|160881638|ref|YP_001560606.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430304|gb|ABX43867.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 234

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++DDK +A  +E+ L S+ + V+      +G+E+ +      +ILD+ +  I G 
Sbjct: 5   INILVVDDDKEIAELVEIHLVSDGYPVFKAYNAMEGLEILQKENIKLVILDIMMPGIDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + P+ +LS  S+  DK+ GL +GADDY+ KPFN  EL+AR+++ +RR  
Sbjct: 65  SMCKKIRETS-TVPIIMLSAKSADIDKIIGLSTGADDYVIKPFNPLELMARVKSQLRRFT 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +  I    L +N +   V   G  + LT  E+ ++ LL+       + +
Sbjct: 124 KFNPSTYEDKNEKEITVTHLVINKETHVVMAYGKEVRLTPIEFDILYLLASNAGRVFSTD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++ +       + V I +LR+K+   +     I+TVWG GY + +
Sbjct: 184 EIFERVWNEKMYEANNTVMVHIRRLREKIEMDSRNAEIIKTVWGVGYKIEK 234


>gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
 gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC
           29909]
          Length = 239

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 112/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G++ +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYQTQWLTRGDEVVAAVRQSPPAIILLDLMLPGSDGITI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR R  
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRPL 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q    T  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 PQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL +  G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232


>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 232

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE  +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKANTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMNQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|229195420|ref|ZP_04322188.1| Response regulator [Bacillus cereus m1293]
 gi|228587960|gb|EEK46010.1| Response regulator [Bacillus cereus m1293]
          Length = 234

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAQSSSFGRFKIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
 gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
           DFL-43]
          Length = 228

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   L+ +++ V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  A    V G  + LT  E++++  L    +  +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTAASKASVDGTTLKLTSHEFRLLSYLMHHMDQVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKK+     G   IETV G GY +
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKI-----GVELIETVRGLGYRM 216


>gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDDK ++  ++  L  EN+ V     G++  +     +F  I+LDL +  I G +
Sbjct: 5   KILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMIPKINGMD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ +R   +  P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR   
Sbjct: 65  VMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + Q        +  G+L +NL   T+   G R+ LT KEY++++LL        TKE   
Sbjct: 124 YDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +   ++V I +LR K+        YI TVWG GY L EN 
Sbjct: 184 ALVWKDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGENV 233


>gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 233

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 128/231 (55%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +     IILD+ + D+ GF
Sbjct: 4   VLIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQKIRE-KNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  + ++  D+ ++   +TV VQ   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++    + +   +  FI KLRKK+        YI+TV G GY   + A
Sbjct: 183 YTQVWTEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEA 233


>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +++ LK+E+F ++  + G+   E+ +  + D +ILDL L DI G  
Sbjct: 3   KILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDINGLN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R  K   P+ +++  ++ +DK+ GL  GADDYI+KPFN  E++AR++A +RR + 
Sbjct: 63  ICKSIRT-KYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +     S I    L ++  ++   + G  + LT  E+ ++E+L L +   L+ E   +
Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L +          + V I  LR+K+  +     YI+TVWG GY++ 
Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYIIE 228


>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 237

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 119/231 (51%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++A+ + ++L+   E F  V+    G D + L +  +FD IILD+ L D+ G 
Sbjct: 5   RILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILDIMLPDLSGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ RA+R      P+  +S  SS  DK+ G   G DDYI+KPFN  E+VAR++A ++R  
Sbjct: 65  EMCRAIR-KGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     ++  G   +NL A  + V+G  +  + + Y+++       N   TKE   
Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++      +   + V I K+R+K+        Y++T+ G GY L    K
Sbjct: 184 YQVWGEDQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKLVTEEK 234


>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 269

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G+  ++  + +  DA++LD+ L D+ G  
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR   
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGA 163

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 164 ADRRSESVLVVGDLTLDEDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 224 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 266


>gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1
           str. 16M]
 gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19]
 gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator
           [Brucella melitensis ATCC 23457]
 gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 6 str. 870]
 gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 3 str. Tulya]
 gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 4 str. 292]
 gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis bv. 3 str. Ether]
 gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family
           protein [Brucella abortus bv. 9 str. C68]
 gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus]
 gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1
           str. 16M]
 gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Brucella
           melitensis biovar Abortus 2308]
 gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19]
 gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis ATCC 23457]
 gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308
           A]
 gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC
           8038]
 gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1
           str. 16M]
 gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68]
 gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether]
 gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1]
 gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2
           str. 63/9]
 gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
          Length = 229

 Score =  267 bits (684), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 246

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++A   +  L+   F V +   G  G +  +   +D +I+D+ L  + G E
Sbjct: 17  KILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGLE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116
           +LR +   K   PV ++S      DK++G   GADDYI+KPF+  ELVAR++A +     
Sbjct: 77  ILRRMNEEK-DIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENYER 135

Query: 117 ---RRSRGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              R   G      I    L +   A+ V V G  ++L  KE+ ++  LS   N    +E
Sbjct: 136 LKNRFKEGPPPVKAISIRGLRIEKGARRVYVHGQEVNLAQKEFDLLLFLSEHPNHVFGRE 195

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V I ++R+K+ +      Y+ETVWG GY  R
Sbjct: 196 EIFERVWGLDSLGDSTTVTVHIARIREKIESDPSSPQYVETVWGAGYRFR 245


>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
 gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
           [Leptotrichia buccalis C-1013-b]
          Length = 226

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + +    DL++N     V      + I L+ +E+++++ L L K   L+++  L  
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I+D++I  LR K+ +    + +I+TV G G++ +
Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIFK 226


>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
 gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
           urealyticum DSM 7109]
          Length = 227

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+++L+  +  +L+ E ++V + + G   +E+ + +  D I+LDL L  +PG E
Sbjct: 3   KILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   +  P+ +L+   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR + 
Sbjct: 63  VCRAIRAKSM-VPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + +++  G + V++D   V V+G  + L  KE++++E+L       +T+E  ++ 
Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + K +DV + +LR K+         + T+ G GY  
Sbjct: 182 VWGSDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGYKF 225


>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
 gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
          Length = 239

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSQEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
          Length = 227

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 235

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ ++  +   L+ + F+ ++ +   DG+   +  + D IILDL L D  G EV
Sbjct: 7   ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    + P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRKLRTL-TAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLADP 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q L+    LS++  A+ V      I L+ KE+ ++  L+   N   TK   L+ 
Sbjct: 126 KFKATTQQLLRFDSLSIDKTARKVMAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E   I V+I +LR+KL  +    +YI TVWG GY       +
Sbjct: 186 VWGYSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGYKFDPEETE 235


>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
 gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
          Length = 219

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   LK+  F  + T  G   + L    +FD IILD+GL DI GFE
Sbjct: 3   RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VL+ LR   + TPV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R  + 
Sbjct: 63  VLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +   D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++ 
Sbjct: 123 GPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   L +E + V     G +   L +  ++  I+LDLGL D  G 
Sbjct: 1   MKLLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R   I  PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  QLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GDLS+NL ++ V +    + LT KE+ ++  L +R + T+ +E     LY 
Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V I  LR+KL     GK+ I+TV G GY L E
Sbjct: 181 WQDDTGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLEE 218


>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ + + I + L++E F          G+ L +  E D IILD+ +  + G E
Sbjct: 4   RILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K + P+ +LS  S   DK+ GL +GADDY++KPFN  EL+AR+++ +RR + 
Sbjct: 64  AAFKIREEK-NMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + Q     +I  GDL +N   + V V+G  I LT KE+ ++ELL+  K T ++       
Sbjct: 123 YNQRAEHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++          + V I K+R+K+ +      YI+T+WG GY +
Sbjct: 183 VWQADALKSDSTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226


>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 237

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L  E F V +   G   +   + +E   I+LDL L    G E
Sbjct: 13  RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +  + +LS      DKV GL +GADDY+ KPF   ELVAR++A++RR R 
Sbjct: 73  VCRRIRTFSDAY-ILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRA 131

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + L     L +++ A+TV V  + + LT  E+ ++  L+ R +   ++   +  +
Sbjct: 132 SSLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I+DV +  LR+KL + A    +I TV G GY LR
Sbjct: 192 WGSSWFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSLR 235


>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 248

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +   L    + VY    G + +++      D IILD+ +  + G+ V
Sbjct: 15  ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVMMPKLDGYGV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            +A+R      P+ +L+ +S ++D++ GL+ GADDY+ KPF+ +EL +R+R I+RR    
Sbjct: 75  CQAVRKTS-RVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSPL 133

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G + ++ D + V     R+ LT KE+ ++ LL+ R   T++++  L 
Sbjct: 134 KAFNHQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELLQ 193

Query: 177 HLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++       + + +DV + +LR+KL    G    I TV G G+ L+
Sbjct: 194 KVWEYNKDSIVDTRTVDVHMSRLRQKLKEKLGETILIHTVRGVGFTLK 241


>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 269

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 17/240 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 86  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  G+L V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 145 SANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAK 226
              L  L+    R   +++++DV++ +LR KL         I TV G GY    + +NA 
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRMGDNAP 264


>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + V+    GE+ IE       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR   
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + ++  G L V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 124 TVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL   A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGEKA---KHIGTVIRVGYKFEE 225


>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 221

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ +   +   L++  + V     G DG+ +    + D ++LDLGL  IPG 
Sbjct: 1   MAILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGLPGIPGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  + S PV +L+   ++ D+V  L +GADDY+ KPF+  EL+AR+RA +R   
Sbjct: 61  EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLRGGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++L A+T  V+G  ++L+ +E+ ++E+L        ++   L+ ++ 
Sbjct: 121 QERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    +++V++ +LR+KL     G   I+TV G GY L + A+
Sbjct: 181 YDFDGASNVVEVYVSQLRRKL-----GSERIQTVRGAGYRLGDGAR 221


>gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
 gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+      +   L    F V +   G DG  L     FD IILD+ L D+ G+
Sbjct: 1   MKLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++++ALR     TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  QIVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +   DL+++L    VE  G++I+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 SPPSSNQLKISDLTLDLIKHRVERSGYKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +       I TV G GY+L   + ++
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNF-ETKLIHTVRGMGYMLDAESDND 228


>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 243

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 20  VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 80  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  + DVFI  LR+KL    G    I TV G GYVLR+  
Sbjct: 200 YDFDVDTNVADVFISYLRRKLERD-GLPRVIHTVRGIGYVLRDEP 243


>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 227

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V   + G  G+ +    ++D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ ++LR +  +TP+ +L+ + ++E +V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  EIAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +     +L V+L  + V  +  +I LT KE+ ++E   L +   L++ +  + ++
Sbjct: 121 SSIQKTQFTIANLHVDLIKRRVTRENDKIILTSKEFSLLEFFILHQGEVLSRSLIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV + +LR K+ +       I T+ G GY+L     D
Sbjct: 181 DMNFDSDTNVIDVAVKRLRAKI-DQGYEPKLIHTIRGMGYLLEIPEND 227


>gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
 gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+   AH +   L  + + V +   G  G+ L + +++D I+LD+ L  + GF
Sbjct: 1   MKLLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +K  TPV +L+    ++D+V GL  GADDY+ KPF+  EL+AR++A+VRR R
Sbjct: 61  NVLRELRRSK-QTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL VNL A+     G R+ LTGKE+ ++ LL+ R+   L+K +    ++D
Sbjct: 120 QQEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +++V I +LR KL +       + TV G GYVL 
Sbjct: 180 INFDSNTNVVEVAIKRLRSKL-DGPYPSKLLHTVRGMGYVLE 220


>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 233

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++A+A  ++  L+ E + V     G++ +EL +  +   I+LD  L    G  
Sbjct: 7   KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  K   P+ +L+  +S  D    L  G DDYI+KPF  EEL ARIR I+RR   
Sbjct: 67  VLRRIR-KKSEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +           G   ++L          +I+LT KE+ ++  L        +++  L
Sbjct: 126 SNKQKENSTISFNFGPFKIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      +   +DV+I  +R K+ +    K  I+TV G GY LR+
Sbjct: 186 DVVWGYDFVGQTNTVDVYIRTIRNKIGDP--NKKLIQTVRGLGYCLRK 231


>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
 gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
          Length = 241

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+++D+  +   +++ L+ EN+ +   D GED +++    ++D I+LDL L  + G 
Sbjct: 6   MHLLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLPKMDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    +R +K +TP+ +L+       ++ G + GADDYI KPF+  E+V R+ AI++R++
Sbjct: 66  QAAEKIRESK-NTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQ 124

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      LI      ++  +  V   G+ ++LT KEY ++  L+   +    +E  
Sbjct: 125 SGKPKEKDNPDLIKMPHFEIDDQSHRVLADGNAVNLTPKEYDLLLYLAQSPDQIFGREQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVL 221
           L  ++      +++ +D  + +LR+KL+  +      I TVWG GY  
Sbjct: 185 LREVWKYEFFGDLRTVDTHVKRLREKLTKHSEPAAKMIVTVWGLGYKF 232


>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 219

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL   I + LK E + V     G   +      +F   +LDLGL  + G 
Sbjct: 1   MRILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+ +EL ARIRA++RRS 
Sbjct: 61  QVLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ ++  G++ ++   + V  +G  + L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ++V I  LR+KL         I TV G GY+
Sbjct: 181 WGEEAESNTLEVHIHHLRRKL-----FPELIRTVRGVGYL 215


>gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 226

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 119/229 (51%), Gaps = 11/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+  +A  I+  L +  F   V    +  I       FD +ILDLGL D  G +
Sbjct: 3   KILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGLPDKDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ IL+    I DKV GL+ GADDY++KPF  EEL+AR+R  +R++  
Sbjct: 63  VIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPA 122

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++   ++S++L  + V+V G  + L  +E+ + E         L++E  L
Sbjct: 123 AGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++     P   I+DV++  LRKKL         IETV G GY LR++
Sbjct: 183 DRVWGYDYSPGSNIVDVYVGYLRKKLGAD-----LIETVRGIGYRLRQS 226


>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
 gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
           protein [Nodularia spumigena CCY9414]
          Length = 250

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR    +   PV +L+ +S  ++KV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G+L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   +  ++ E
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPSLPQSNE 239


>gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator
           [Polaromonas naphthalenivorans CJ2]
 gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator,
           winged helix family [Polaromonas naphthalenivorans CJ2]
          Length = 226

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+   A  +   L    + V V   G DG+      +   +ILD+ L  I GF
Sbjct: 1   MKILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++   PV +L+   + +DKVRG   GADDY+ KPF   EL+AR+RA+++R +
Sbjct: 61  AVLSALRTSR-QIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQ 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++         G RI L+ KE+ ++ LL+ R    L++    + ++
Sbjct: 120 PVVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +++V I +LR K+ +       I TV G GYVL   A
Sbjct: 180 DIHFDSDTNVVEVAIRRLRAKI-DDPFDDKLIHTVRGVGYVLERRA 224


>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
 gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 247

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  + V     G   +        D I+LD+ L D  GF +
Sbjct: 13  VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ R+RAI+RR+   
Sbjct: 73  TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        +    LS++     V   G  + L+  E++++          L K   L  
Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++      + +I+D ++  LR+KL +  G    + TV G GY LR   +DE 
Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKL-DHGGAPALLHTVRGVGYCLRLP-RDEP 242


>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 219

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK+  F  + T  G   + L     FD IILD+GL DI GFEV
Sbjct: 4   ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           L+ LR   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R  + G
Sbjct: 64  LQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDTTG 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +   D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 124 PDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 184 DFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 233

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F V     G   +E       D I+LD+ +    GF 
Sbjct: 8   KVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAPDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A  S  +  L+   ++ D++ GL +G DDY++KPF+ EE+V R+RAI+RR R 
Sbjct: 68  VARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRP 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     ++   DL ++  A TV   G  IHL+  E+ ++  L +     ++K   L+ 
Sbjct: 128 AQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDR 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   E E +I++ +I  LR+K+   A G   I T+ G GY L+
Sbjct: 188 VWDYDFEGESRIVESYISYLRRKI--DAEGPPLIHTLRGVGYRLQ 230


>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 219

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 7/221 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+ V 
Sbjct: 1   MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
            ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR     
Sbjct: 61  AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGNGA 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  G+L ++  A  V + G  + LT KE+ ++E L+LR    ++K   L H++D 
Sbjct: 121 GASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVWDF 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +  I++V++  LR+KL         I TV G GY L 
Sbjct: 181 AYDGDPNIVEVYVSTLRRKLDAG-----LIRTVRGAGYRLE 216


>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
           caulinodans ORS 571]
          Length = 233

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E
Sbjct: 4   RILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   PV +L+      ++VRGL +GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRA 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H  +L+  GD+ ++ +   V   G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 184 WGQDVYIDERTVDVHVGRLRKAI-NRGRQPDPIRTVRGAGYSFNE 227


>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
 gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
           jeikeium K411]
          Length = 240

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LTG E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|324325234|gb|ADY20494.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 234

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHASSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
 gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
          Length = 229

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  FIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVMANDDALDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L  A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALETA-GHDKLIQTVRGAGYRFSTKA 229


>gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 232

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ AL   +   L  E F+V V   GE G++L +  +   IILD+GL  I G EV
Sbjct: 9   VLVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPRIDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R+LR    +  V +L+      DK+ GL  GADDY+ KPF+  E+VAR+RA++RR R  
Sbjct: 69  CRSLRRFSDAY-VLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRRM 127

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +    GDL+++L  + V +    I LT  E+ ++ +L+   N   ++   +  ++
Sbjct: 128 PDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + +++DV + ++R+KL + AG   Y+ TV G GY +
Sbjct: 188 GAGWVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGYRM 229


>gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
 gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271]
          Length = 229

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAVIAELEKDYLEVAGYTVDIDYSGEKGLQSVLLKDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R K+      K+YIET+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
 gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L  E++ V     GE+ +++  K      IILD+ +  I G+
Sbjct: 5   KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +V R +R      P+ +L+  S   D++ G + G D+YISKPF+ + LVAR+ A++RRS 
Sbjct: 65  DVCREVRETS-KVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSG 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G+ +  +  G + ++  A  V V G  I L+ KE+++++     +   L++E  LN+
Sbjct: 124 LTAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNN 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     + + ID  + KLR K+        YI+T+WG GY  
Sbjct: 184 VWNYDYFGDARTIDTHVKKLRAKIGEKG---EYIKTIWGVGYKF 224


>gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208]
 gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens
           LL3]
          Length = 235

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D++ +   I+ +L  E  + V       DG+        D +ILD+ L D  G+
Sbjct: 7   KVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPDGEGY 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RRS 
Sbjct: 67  DICKQIRDIS-HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSS 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +LI  G   ++     +   G  I LT KE  ++       N  ++KE    
Sbjct: 126 YLQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          + V I +LR+K+       +++ TV G GY   
Sbjct: 186 AVWGEDFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKFV 231


>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 248

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  + + + + L  E F V     G + +E+   + FD I+LDL L D+ G++
Sbjct: 15  QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R  K    + +L+  S  +DKV GL  GADDY++KPF  EEL+AR+ +++RRS  
Sbjct: 75  VCKKIRE-KDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAI 133

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ +    L +  + + V +  H +  T KE+ +   L+  +    ++E  +N
Sbjct: 134 TQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVN 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E EV+++D  I  +R+K   A  G N I+TVWG GY  
Sbjct: 194 LIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238


>gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 225

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F  +    G+  +   +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLMLPGTDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+++++   +V   G  I LT  E+ ++  L+ +     ++E+ L  ++  
Sbjct: 123 PAPEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGYK 221


>gi|332637342|ref|ZP_08416205.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 250

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 71/252 (28%), Positives = 127/252 (50%), Gaps = 18/252 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L++ED+ +++  + +  K EN++      G D + +       +D +ILDL L  + 
Sbjct: 1   MKLLMVEDNTSVSEMMGMFFKKENWDASYAYDGNDAVAMFNEEPDAWDMVILDLNLPGLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R      P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAVKIREVSKHVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           S    Q             + T    +N + +   + G+ I  LT KE+ ++ +L+ ++ 
Sbjct: 121 SETAGQPASSEPQVHEDFDVQTRTFKLNSNTREAYLNGNLIQDLTPKEFDLLRVLAKKQR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-- 224
              ++E  L  ++D     + + +D  + KLR+K+     G   I+TVWG GY   ++  
Sbjct: 181 QVFSREQLLQLVWDYEYFGDERTVDAHVKKLRQKIEKV--GPQVIQTVWGVGYKFDDSNV 238

Query: 225 AKDETCEYLETA 236
             DE  E    A
Sbjct: 239 TSDEESEASAKA 250


>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 228

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+KA+   I++ L  E + V     GE+ +        D I+LD+ L    G++
Sbjct: 4   KILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKKNGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +   K+ TP+ +L+  + I DKV GL+ GADDY++KPF+  EL+ARI+A +RR++ 
Sbjct: 64  VCKEI-QQKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRAKK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + I+ G L +  D + V++  H IHLT KE+ ++ LL+        ++  L 
Sbjct: 123 ITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDELLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + + +D+ I ++R+K+         I+TV+G GY +R+
Sbjct: 183 EIWGYDYYGDTRTVDMHIQRIRRKIDIHPN--KLIQTVFGIGYKMRK 227


>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
 gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
           Nb-231]
          Length = 228

 Score =  267 bits (684), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I + L   +++V+  D GE G+ L      D ++LD  L  + G +
Sbjct: 3   KILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSGID 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R ++        P+ +L+     EDK+RGL+ GADD+++KPF+  EL+ARI+A++RR+
Sbjct: 63  FARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRRA 122

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I    L+++  A  V +    + +   E++++           ++   L+H+
Sbjct: 123 APLSGDERIEVKGLTLDPVAHRVWIGEDTLEIGPTEFRLLRFFMTHPERVFSRGQLLDHV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK ++   G    I+TV G GY  
Sbjct: 183 WGTNVYVEERTVDVHIRRLRKTIAGR-GHDRLIQTVRGTGYRF 224


>gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 227

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V   D G  G  L    ++D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+S     DLS++L ++ V   G+RI LT KE+ ++E     +   L + +    ++
Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMSFDSDTNAIDVAVKRLRAKIDND-YEPKLIQTVRGVGYMLE 222


>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 235

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLT 55
           M+ +L+I+DDK L   ++  ++ EN +      G +G+++ K  +    F  IILD+ + 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + GF+VL+ +R    + PV +L+  S+ EDKV GL+ GADDY++KPF+  EL AR+ ++
Sbjct: 61  YMDGFQVLKKIREVS-NIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119

Query: 116 VRRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RR              I   D++++   ++V V+G  + LTGKE+ ++  L+  K    
Sbjct: 120 IRRYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           TK+     +++     +   I  FI KLRKK+        Y+ TV G GY   + A
Sbjct: 180 TKKQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235


>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+    H + + L++  + V     GE+ +EL    + D +ILD+ +  + GF 
Sbjct: 5   HILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPHLDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    S P+ +L+     +D+V+GL  GADDY+ KPF+  EL+AR+RA++RR++ 
Sbjct: 65  TCERIRQFS-SVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRRAQT 123

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G+L ++     V      + L+  EY+++   +      L+ E  L  
Sbjct: 124 AEAVTQNRYFTHGNLKIDFARAEVWKDDKPVFLSATEYRLLIQFAHNMGRVLSPEELLTA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++  + + + +I+ V I +LR+KL +      +I T  G GY++    KD +
Sbjct: 184 VWGTQYKEDKEILWVSIARLRQKLEDNPHNPVHIVTRSGLGYLMPPMEKDSS 235


>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D  ++   ++  L  + + V  T  G+  + + +    D I+LD+ +  + G++ 
Sbjct: 5   ILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMDGYQF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR  R  +  TPV I++      D V GL  GADDYI KPF   EL ARIRAI+RR   H
Sbjct: 65  LRQFRQER-QTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRGEEH 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++  G++ ++    TV V G  + LT  E+ ++  L        T+   +  L D
Sbjct: 124 PDKQEILRAGEIILDETTHTVTVSGKPVSLTPIEFDLLATLMRSPGRVYTRAELVEILAD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    ++V +  LR K+        YIET++G GY  R+ 
Sbjct: 184 SGFAGIDTTLNVHVRNLRLKIEPDPKNPRYIETIFGIGYRFRKP 227


>gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 255

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 21  MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 81  SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   +P+  +IDV I +LR K+     G   + TV G GY+L+     ++ 
Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGP-LLHTVRGAGYMLKAGRAKQSA 250


>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
 gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
          Length = 232

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G D +   +  E D  ILD+ L DI GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  I             ++++  +    + G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +A      L+   + V +   G  G++      +D +I+DL L  + G
Sbjct: 1   MKNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+++ +R  K+  P+ +LS  S   DK+RGL  GADDY++KPF+  EL+ARIR+ ++R 
Sbjct: 61  FEIIKEVR-KKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRY 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I    L +N  +  V V G  +  T KEY+++   +   N   +KE  
Sbjct: 120 ERLTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + L+      ++  + V I K+RKK+        YIETVWG GY    
Sbjct: 180 FDLLWGAEYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFNP 228


>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
 gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
          Length = 229

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 127/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +   K     D ++LD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R   +  P+ +LS  ++  DK++GL +GADDY++KPFN  E++ARI++++RRS
Sbjct: 61  NQVVKEVRKE-MQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   Q+ +  G L +  ++  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 NYMTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++        K + V +  LR K+  A GG+  I+TVWG GY + E
Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGE 228


>gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDDK ++  ++  L  EN+ V     G++  +     +F  I+LDL +  I G +
Sbjct: 5   KILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMIPKISGMD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ +R   +  P+ I+S   S  DK  GL  GADDYI+KPF+  E++ARI+A +RR   
Sbjct: 65  VMQHIREHSV-VPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + Q        +  G+L +NL   T+   G R+ LT KEY++++LL        TKE   
Sbjct: 124 YDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +   ++V I +LR K+   +    YI TVWG GY L EN 
Sbjct: 184 ALVWKDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGENV 233


>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
          Length = 232

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEMVARVKAQLRQYMR 121

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +             ++++  +    + G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 232

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I L LK   F V     GE+ +++   +  D  +LD+ L  + GF+V
Sbjct: 7   ILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R       + +L+     EDKV+GL  GADDYI+KPF+  EL ARI++++RR   H
Sbjct: 67  CKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRRIEVH 126

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I +G   +N+  + +   G  + LT  EY +++ L  + +  ++++  LN ++ 
Sbjct: 127 DEKTHTITSGPFLLNIIEERLYKSGQLVDLTPTEYMILQYLMDQASKPVSRDEILNMIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E K++DV + +LR+K+        +I TVWG+GYV +E+
Sbjct: 187 TNYVGETKVVDVNMRRLRQKIECNPSEPEFILTVWGKGYVWKES 230


>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
 gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocella silvestris BL2]
          Length = 265

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ AL+  +   L++E F V   + G++          D +ILD  L  + G E
Sbjct: 29  RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLPGVSGLE 88

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  +   S PV +L+      ++VRGL  GADDY+ KPF+  EL+AR+R+++RR+
Sbjct: 89  ICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRRA 148

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     +++  GDL ++     V   G  +HL   E++++E L  R     ++   L+ +
Sbjct: 149 RPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDSV 208

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + +DV + +LRK L  A G ++ I TV G GY   E 
Sbjct: 209 WGLSAEIDERTVDVHVGRLRKAL-TAPGERDPIRTVRGAGYSFDET 253


>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 225

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +E+ +++E + +     G + +E+ K  + D IILD+ +  + G E 
Sbjct: 6   ILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    +TP+ +LS  S   DK+ GL  GADDY++KPF+  EL+ARI++ +RR +  
Sbjct: 66  CMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRRYKHL 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I   +L VN+ +  V V G  I LT +E+ ++ +L++ +   L+ +    
Sbjct: 125 NSRSVRNENEIQIDELIVNVASHRVTVAGEEIKLTPREFALLHMLAINRGLVLSMDKIYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++         + V I KLR+K+        YI+TVWG GY + 
Sbjct: 185 EVWNEPFMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230


>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
 gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
           proteobacterium HdN1]
          Length = 228

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+ A+   + L L+   F V     G++          D ++LD  L    
Sbjct: 1   MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60

Query: 59  GFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R +R      + P+ +LS  S  ++K+ GL+ GADDYI+KPF+  EL++RI+A++
Sbjct: 61  GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120

Query: 117 RRSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR      +  +V G+L++++ ++ V  +   I L   E++++E      N   ++E  L
Sbjct: 121 RRRAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEFKLLEFFLRNPNRVFSREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++      E + +DV I +LRK L N A     IETV G GY L  
Sbjct: 181 NRVWGSTVYIEDRTVDVHILRLRKSL-NKAELPPMIETVRGSGYRLSP 227


>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
 gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
          Length = 228

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +   L+ + F+V       + ++       + I+LD  L    G +
Sbjct: 4   RILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGSGIK 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+      + PV +L+     EDKV+GL+ GADDYI+KPF+ +EL+AR+ A++RR 
Sbjct: 64  YIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMRRV 123

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q   I    L ++  A  V      I +   E++++           ++E  L+++
Sbjct: 124 APMTQDTVIDIHGLQLDPVAHRVSANDTVIDIGPTEFKLLHFFMTHPERVYSREQLLDNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +    Y++TV G GY  
Sbjct: 184 WGMNVYVEDRTVDVHIRRLRKAL-TPSEHDKYVQTVRGAGYRF 225


>gi|238920016|ref|YP_002933531.1| DNA-binding transcriptional activator CusR [Edwardsiella ictaluri
           93-146]
 gi|238869585|gb|ACR69296.1| transcriptional activator protein CopR [Edwardsiella ictaluri
           93-146]
          Length = 227

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 128/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +TD G  G  L     +D IILD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGKYLCKGLTEAGFVADLTDNGLTGYHLAMTASYDLIILDILLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRNANQGMPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  +S +   DLS++L ++ V   G RI LTGKE+ ++E     +   L + +  + ++
Sbjct: 121 THIPESQLHVADLSLDLLSRKVTRSGKRITLTGKEFTLLEFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +   IDV + +LR K+         I+TV G GY+L   A DE
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDF-EPKLIQTVRGVGYLLE--APDE 226


>gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
 gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
           16795]
          Length = 232

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE   +  +    +LD+ L D+ G 
Sbjct: 4   KILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDMSGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  EDK+ G  SGADDYI KPF+ +EL+ R+ A++RR +
Sbjct: 64  EVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRVK 123

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S+    IV+    ++LD + +   G  I LT  E+ +++ L +    +L+++  L 
Sbjct: 124 KEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQILT 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 184 EVWGNNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 231


>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 243

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 20  VLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAV 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 80  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++ +L+      L+++  L  ++ 
Sbjct: 140 DRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG 199

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  + DVFI  LR+KL    G    I TV G GYVLR+  
Sbjct: 200 YDFDVDTNVADVFISYLRRKLERD-GLPRVIHTVRGIGYVLRDEP 243


>gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
 gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM
           12042]
          Length = 228

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I  +EDD A+  +++  L  E + V        G+EL +   FD ++LD+ L D  G+E
Sbjct: 3   KICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYE 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  L+      + V GL  GADDYI+KPF   EL++R+ +++RR+
Sbjct: 63  ICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRA 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  A++ I   DLS+N  A  V      + LTG EY+++ +L+  +N  +T++     +
Sbjct: 123 GKKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAI 182

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D G +      + V+I +LR+KL +       I T+ G GY L E
Sbjct: 183 WDLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKLGE 228


>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
 gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. GAI101]
          Length = 229

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE ++V   + GE+ + L      D +ILD  +  + G E
Sbjct: 7   QILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIE 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R    + PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRI 126

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A    +   D++++ +   V      + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV I +LRK L+   GG + I TV G GY L
Sbjct: 187 WGRDIFVDTRTVDVHIARLRKALTQH-GGDDPIRTVRGAGYAL 228


>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 226

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD   A     +L+   + V+      + ++L + +  D I+LD+ +  I GF
Sbjct: 1   MNILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVMMPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+  LS    ++D+V GLQ G DDY+ KPF   EL+AR+ A++RR  
Sbjct: 61  EVCRQIRR-NSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + +  G+++++     V    G  + LT  E++++  L       L     L+
Sbjct: 120 ADVLNTSTRLSQGNITLDPVEHKVLFTDGRVVELTPLEFRLLYYLMKNSGRILNVTQILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++ V+I +LR K+        ++ TV   GY    
Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKVEEDPDHPRHVITVRNLGYKFEP 226


>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +E+ L+ E + V     G DG+E      +D ++LD+ +  I G E+
Sbjct: 5   ILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + PV +L+  SSI DKV GL  GA+DY++KPF  EEL+AR+RA +R     
Sbjct: 65  LRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATK 124

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A   +  GDL ++   + V    H I LT +E+ ++  L   +   L++E  L 
Sbjct: 125 DMALQVADQWLSAGDLRLHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++      +  ++DV+I  +R K+         I TV G GYVL+E+
Sbjct: 185 NVWGIDYIGDTNVVDVYIRYVRNKIDPTRQLPELIHTVRGIGYVLKES 232


>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
 gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           D-4968]
 gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
           NSW150]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E ++      GE+G++      FDA+ILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+++R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKSIRE-HLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +I   ++ V+   + V + GH + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMF 224


>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/227 (41%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K LA  IEL L+ E + V V   G +G++     ++D I+LDL L  + G E
Sbjct: 3   RILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TPV +++   SI D+V GL  GADDYI KPF  EEL+AR+RAI RR   
Sbjct: 63  VCRRLRQEK-ETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A +     DL +  +++ V+  G  I LT +EY ++  L   KN  +T+E  LN
Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 182 KVWGYETEVETNVVDVYIRYLRNKI-DTEGEDSYIQTVRGTGYVMRE 227


>gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  ++ L L+ E F V     GE  + L     FD ++LDL L  + G  V
Sbjct: 5   VLMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++  +  ED + GL++GADDY++KP     L ARIRA++RRS G 
Sbjct: 65  CRVLRSRG-DLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           AQ   +  GDL V  D +T    G ++HLT  E++++  L   +   +T+E  LN ++  
Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +++DV I +LR+K+         + TV G GY +
Sbjct: 184 DYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRI 223


>gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis
           Et1/99]
 gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N++ +    G++ ++  K +  D ++LDL L  + G  V
Sbjct: 10  ILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHAPDLVLLDLMLPGMDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++      D++ GL+ GADDYI KPF+  E+VAR++AI++R +  
Sbjct: 70  CRELRSFS-ELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRCQRG 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +Q  +    L V+            + LT  E+++++ LS +     ++E  LNHLYD  
Sbjct: 129 SQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL      + +I  V+G GY    ++
Sbjct: 189 RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGYRWESDS 231


>gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae]
 gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 228

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A  S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SSLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +       + T  G GY+L  +A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EAKLLHTCRGMGYML--DAQDE 227


>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
          Length = 223

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGTPLKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
 gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
          Length = 232

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +             ++++  +    + G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGERFFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
          Length = 214

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 94/221 (42%), Positives = 129/221 (58%), Gaps = 9/221 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  +EL L  EN+NV     G+DG++    + +D IILDL L  I G E
Sbjct: 3   QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + STP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRAI+RR   
Sbjct: 63  ICRKIRQQQ-STPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +I      +      V V G  I LT  EY ++ LL+  KN  + +E  LNH++  
Sbjct: 120 PQKDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGY 174

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E E  ++DV+I  LR KL      K  IETV G GYV+R
Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDK-MIETVRGVGYVIR 214


>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
 gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Melissococcus plutonius ATCC 35311]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + + +E ++V     G++ +       + D IILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MQVVKKLRKES-QIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 +  +++  G L +N D+  V  + G  I LT  E+ ++ LLS   N   + +  
Sbjct: 120 NIKPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A  G+  I+TVWG GY +
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKI 226


>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 223

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S IV G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIVCGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 228

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  +   L+ E F       G  G+E  +  + D I+LDL L  + G E
Sbjct: 4   RILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGMLGTE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V +ALR    +   PV +++      D+V G + GADDYI KPF+  EL  RIRAI+RR 
Sbjct: 64  VCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAILRRC 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     L+  GD+ ++ +   V        LT  E++++  L  R+   ++++  L 
Sbjct: 124 DVEQPTGSPLLTLGDIVIDRERHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQLLQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++   D  + + +D  I +LR KL         I+TV G GY + EN
Sbjct: 184 DVWSYHDVGDTRTVDTHITRLRGKLGAPGEQ---IKTVRGFGYKIEEN 228


>gi|226951189|ref|ZP_03821653.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
 gi|226838068|gb|EEH70451.1| heavy metal response regulator [Acinetobacter sp. ATCC 27244]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 9   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLPKLDGW 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  + P+  LS    IED+V+GL  GADDY+ KPF   EL+ARI++++RR +
Sbjct: 69  NIIYDIRKSGKTMPILFLSARDQIEDRVKGLDLGADDYLVKPFAFAELLARIKSLLRRGQ 128

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 129 QKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I+ + G GYVL 
Sbjct: 189 DMNFDSDTNVVEVAIKRLRSKIDSNFS-PKLIQNIRGMGYVLE 230


>gi|225863073|ref|YP_002748451.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225785922|gb|ACO26139.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEKKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 248

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   +E  L    +NV     G + +E  +    D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QVAGIPNSGVIQVADLRIDTNKRQVFRADERIRLTGMEFSLLELLVGRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 DVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +        D ++LD  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ ++  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  LIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 TPTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I  LR  L +A G    I+TV G GY     A
Sbjct: 184 WGTNVYVEDRTVDVHIRPLRNALEDA-GHDKLIQTVRGAGYRFSTKA 229


>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 134/229 (58%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+   IEL+L+ EN+ V   + G+  ++L   +  D ++LDL L D  G++
Sbjct: 3   KILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +   K + PV +LS  + + DKV GL+ GA+DY++KPF+  EL+ARI+ I+RR+  
Sbjct: 63  LCKEI-TGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +S          I+  +L+ +L+++ V   G  + LT KE++++E L  R +   T++
Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L   +      + + +D+ I +LRKKL + A    Y+ T++G GY L
Sbjct: 182 ELLQIGWGYDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230


>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ L   +   L++E F V     G++     +    D ++LD  +  + G E
Sbjct: 4   RILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      D+VRGL +GADDYI KPF+  EL+AR+RA++RR+
Sbjct: 64  LCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRRA 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  V  +G  +HL   E++++E L        ++E  L+ +
Sbjct: 124 KPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LRK + N     + I TV G GY   E
Sbjct: 184 WGHDVYIDERTVDVHIGRLRKAI-NRPRRPDPIRTVRGSGYSFDE 227


>gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+ED+      +   L    F V     G DG+   +  ++  IILD+ L  + G+
Sbjct: 1   MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DILRELRRTH-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI   D+ +++  + V   G RI LT KE+ ++ +L  R    L++    + ++D
Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV + +LR KL +    K  + TVWG GYV 
Sbjct: 180 MNFDSDTNVVDVAVRRLRAKL-DEGFEKKLLHTVWGMGYVF 219


>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V     G + +   +    D ++LD+ L D+ GF 
Sbjct: 10  RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGFA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV  L+   + +DKV GL+  ADDY++KPF+ EE++ARIRA++RR+RG
Sbjct: 70  VAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRRTRG 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  GDL ++ +A  V   G  + L+  E++++    +     L+K   L+H++
Sbjct: 129 DLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  +++ ++  LR+K+         I T+ G GYVLR
Sbjct: 189 NYDFGGDAGVVESYVSYLRRKV--DVSEPRLIHTLRGVGYVLR 229


>gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 223

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + I++ L    F V     G+ G+E  +   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKIGLEAAQSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A R   I  PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR+ A++RR  
Sbjct: 61  DVLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I    +    + + V +    I LT +EY+++EL  L K   L++      LY 
Sbjct: 121 GHANPVIQHSLVRFEPNQRKVFLCDQEISLTTREYKLLELFMLNKERVLSRNFIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +E     ++V I  LR+KL     GK +I TV G GY L +N +++
Sbjct: 181 WDNEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDEED 223


>gi|187779051|ref|ZP_02995524.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
 gi|187772676|gb|EDU36478.1| hypothetical protein CLOSPO_02646 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD  + + I+  L  E ++      G + +E  +  E+  +I+D+ +  + G 
Sbjct: 4   IKILIVEDDININNMIKESLIKEGYDAGQAFHGLEAVEKFQGEEWHMVIMDVMMPVMDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E +R +R  K    + ILS      DK+ GL  GADDYI KPF+  EL+AR+++ +RR  
Sbjct: 64  EAMRRIRE-KSKVSIIILSAKGEDSDKIIGLGMGADDYIVKPFSISELIARVKSNIRRAI 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S  +   +   GD+  N++   V   G  + LT KE ++++L     N   TK  
Sbjct: 123 YYNETSANNEDKIYQYGDIKFNMNKYIVTKGGKELALTAKEMKILKLFFENPNRVFTKVQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ++      +   + V + +LR K+ + +     IETVWG GY L
Sbjct: 183 IYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDSNNPKLIETVWGIGYKL 230


>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
          Length = 233

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D+ ++   +E  L    ++V     GE+ +E  +  + D ++LD+ +  + G+ V +
Sbjct: 1   MVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR    + 
Sbjct: 61  ELRKES-DVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSA 119

Query: 125 S------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S      +I   ++ ++ + + V     RI LTG E+ ++ELL  R     ++   L  +
Sbjct: 120 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 179

Query: 179 YDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLFQ 225


>gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum]
          Length = 232

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G D ++  +    D  ILD+ L DI GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSI-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q      D         ++++ ++    + G  + LT  E+ ++  L   +   ++ E
Sbjct: 122 YRQPHFKQEDERSEYDIRGMTISKNSHKCILFGKELQLTPTEFSILWYLCENQGKVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  +       +   I +LR+K+   A    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGEKYMDNNNTVMAHIGRLREKMKERAKNPKFIKTVWGVGYTIEK 232


>gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 218

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/219 (38%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   + + L+   F V     G    +  +   FD ++LDLGL  + G 
Sbjct: 1   MRILLVEDDPELGDGLTVGLRQAGFAVDWLRDGNSADQALQSESFDFVVLDLGLPRLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R      P+ IL+   +  DKV GL +GADDY+ KP + +EL ARIRA+ RRS 
Sbjct: 61  EVLNRARGRGQDMPILILTARDATGDKVSGLDAGADDYLVKPIDLDELTARIRALTRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G+LS++L A  V + G  I L+ +E+ ++++L       LT+      LY 
Sbjct: 121 GRAAPLLTHGELSIDLAAHRVTLAGQEIELSSREFSLLQMLLESAGRVLTRTQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DEP+   ++V I  LRKKL     G   I T+ G GY
Sbjct: 181 WHDEPDSNALEVHIHHLRKKL-----GSELIRTLRGVGY 214


>gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
 gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
          Length = 238

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 109/224 (48%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++ED+  L   +   L++  +       G + +          I+LDL L    G  
Sbjct: 9   QIMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVAAVHQQPPALILLDLMLPGSDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 69  VCRELRRF-TELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+S      L ++        QG  + LT  E+++++ L+ +     ++E  LN+LYD 
Sbjct: 128 PAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + ID  I  LR+KL    G K +I +V+G GY     A
Sbjct: 188 YRVVTDRTIDSHIKNLRRKLEALDGEKAFIRSVYGVGYRWEAEA 231


>gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    +   +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKI-DEGHSIKLIQTVRGMGYVLDVPEEE 227


>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 268

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  ++  L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 42  RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 102 VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 160

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 161 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 220

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 221 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264


>gi|147676478|ref|YP_001210693.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272575|dbj|BAF58324.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 233

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L  E F V  T       +L    + D IILD+ L  + G E 
Sbjct: 6   ILVVDDEEVVRELVRHCLVREGFKVITTADAYGAFDLIARLKPDLIILDILLPGLDGIEF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K   PV  LS      D + GL  G DDYI KPF   ELVAR++A +RR    
Sbjct: 66  CRKLR-MKNEVPVIFLSAKGDSSDIILGLGVGGDDYIVKPFVPGELVARVKARLRRLKPG 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + G    ++    L ++L+   V V G  + L  KE++++ LL+   N     E  L
Sbjct: 125 EETAAGREPKMLKYRGLEIDLEGHAVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++  +D  + + + V I +LRKK+        YI+TV G GY  
Sbjct: 185 DLIWQSKDFADNRTLMVHISRLRKKIEKDPNNPAYIQTVRGVGYKF 230


>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L++E + V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GD+ ++ + + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A    I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTALDDTIDVQGLKLDPVSHRVTSNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A+G +  I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-ASGHEKLIQTVRGAGYRF 225


>gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94]
 gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1]
 gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo]
 gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94]
 gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99]
 gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1]
 gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1]
 gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
          Length = 232

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 121/231 (52%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K LA  +E+ LK++ + VY    G+D ++  +  E D  ILD+ L D+ GF+
Sbjct: 4   KILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      PV +L+      DK+ GL   ADDYI+KPFN  E+VAR++A +R+   
Sbjct: 64  ICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLRQYMR 121

Query: 122 HAQSLI---------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           + Q  +             ++++  +    + G  I LT  E+ ++  L  R+ T ++ E
Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++  R       +   I +LR+K+   +    +I+TVWG GY + +
Sbjct: 182 ELFEAVWGERYFDSNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232


>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 224

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 64  CKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   +  G++ ++     V      + L  KE++++  L+       T+E  ++ ++   
Sbjct: 124 STQTVHFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 184 YAGDDRTVDVHIKRLRERFAETPDF--RIETVRGLGYRLE 221


>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ +E       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR   
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + ++  G L V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 124 TVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 228

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ G++
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGYD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   +DV I +LR K+ +       I TV G GY L+  A
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFENKLIMTVRGMGYRLQAEA 222


>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris CGA009]
 gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
           [Rhodopseudomonas palustris CGA009]
 gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 237

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+SE + V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 APERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYALDD 227


>gi|238797820|ref|ZP_04641313.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
 gi|238718348|gb|EEQ10171.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia mollaretii ATCC 43969]
          Length = 230

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 137/231 (59%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L  + F V +   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYIHRALTEQGFTVDIAATGTDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  EL+ARI+A++RR  
Sbjct: 61  RVLKGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELIARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGADVTQLHINDLHLDLLARRVTRGGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +A      + TV G GYVL    + + 
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPYSLKLLHTVRGMGYVLETRPEQQA 229


>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
 gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
          Length = 239

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A+S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSAESVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEIDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
 gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
           cinnamea P4]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++D+ AL  S+   L +  ++V     GE G+E+    +FD ++LD+ +    G+
Sbjct: 1   MRVLVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIMMPRRSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R   I TPV +L+      D+      GADDY+ KPF+   L AR+RA+VRR  
Sbjct: 61  EVVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +    GDL V+  A+ V     RI +T +EY ++E L   +N  ++K   +  ++D
Sbjct: 121 PERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  I++V++  LR+K+ +A  G + IETV G+GY L ++
Sbjct: 181 SAYDGDDNIVEVYVGYLRRKI-DAPFGAHAIETVRGQGYRLVDS 223


>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        + ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  + H + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 228

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R LR A  S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SSLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +       + T  G GY+L   A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EVKLLHTCRGMGYMLE--AQDE 227


>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
 gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
          Length = 225

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     VYV   G  G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R       PV +L+ + + ED V GL +GADDY+ KPF+ +EL ARI+A++RRS 
Sbjct: 63  LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRRSG 122

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GDL ++  +      G  I LT KEY+++E     + T L++   L +++
Sbjct: 123 NESVHMALRCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +    ++DV++  LR K+         I TV G GY++ 
Sbjct: 183 DKDFDTNTNVVDVYVNYLRTKIDKDF-EPKLIRTVVGVGYMME 224


>gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5
           str. 8401]
 gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R +++R  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 255

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D++AL + +++ L+ E + + V     + ++  +    D ++LD+ L D+ G 
Sbjct: 30  IRVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR +   TP   L+   S+ D+V GL +G DDY++KPF+ EELVAR+R ++RRS 
Sbjct: 90  GVLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRRSA 149

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL+++  ++ V   G  + LT  E++++ LL   +   L++   L  
Sbjct: 150 YLAPADDESLSVGDLTLDAASREVTRAGEPVSLTSTEFELLRLLMRNQRKALSRTDILRK 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D        I+D+++  LRKK+   AG    I TV G GY+LR 
Sbjct: 210 VWDYDFGGRTSIVDLYVSYLRKKI--DAGRDPMIHTVRGVGYMLRP 253


>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
 gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
          Length = 236

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  ++  L+   +       GE+ ++  + +  + ++LD+ L  I GFEV
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGIDGFEV 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R        P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+R + Q ++ +G + +++      + G  + LT  E++++ LL  RK    T+E+ L+ 
Sbjct: 126 RNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D       + ID  + +LR+KL +A     +I TV G GY   EN  +
Sbjct: 186 VWDVDKSINTRTIDTHVTRLREKLGDAG---RFIRTVRGLGYKFDENGDN 232


>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
 gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +  +L+   F     +  +  I        D ++LD  L    G +
Sbjct: 4   KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +  +  + +   P+ +L+     EDK+RGL+ GADDY++KPF+ +EL+ARI+A++RR 
Sbjct: 64  IAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V   G  + +   E++++           ++E  L+H+
Sbjct: 124 APTSLEEAIEVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK ++   G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAIATL-GHDRLVQTVRGAGYRF 225


>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+ +D+  +   I   L  E++ V   + GE  +++     E   IILD+ +  + GF
Sbjct: 5   KILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPKVDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R    S PV +L+      D + G + GAD+YI+KPF+ + L+AR+ A++RRS 
Sbjct: 65  AVLKEIRETS-SIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRST 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  + ++  G + +++DA      G+ + L+ KE++++      +   L++E  LNH+
Sbjct: 124 DDSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     + + ID  + KLR KL +     NYI+T+WG GY    +AK
Sbjct: 184 WDYDYFGDARTIDTHVKKLRSKLDDKG---NYIKTIWGMGYKFEVDAK 228


>gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 123/231 (53%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD  + + ++   + E FNV   +   +  E  +    D I+LD+ L D  G 
Sbjct: 1   MKILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ L+      PV  L+   S  D + GL+ GADDYI+KPFN   L+ARI+A+ RR  
Sbjct: 61  DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  GD+ +++++ ++   G +  L  KE+++++L+         ++  L+ +
Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +      + + +DV I KLR+K+     G  +I+TV G GY L     +++
Sbjct: 181 WGMDFFGDFRTVDVHISKLREKI-----GSEFIKTVRGVGYKLVIPEDEKS 226


>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
 gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
          Length = 239

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +E    +E ++V VT  G++ + L      D +ILD  +    G E
Sbjct: 15  KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D++RGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 75  VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRI 134

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GDL+++  A  V  +G  + L   EY++++          ++   L+ +
Sbjct: 135 RPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGV 194

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E++ +DV I +LRK +    G K+ + TV   GY L 
Sbjct: 195 WGTESDIELRTVDVHIRRLRKAIEIE-GAKDPVRTVRSAGYSLE 237


>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D++ +   ++  L  + + V     GE  I++  K  +   +ILD+ +  + G+
Sbjct: 5   KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R      P+ +L+  S   D++ G + G D+YI+KPF+ + LVARI AI+RR  
Sbjct: 65  ETCKTIRR-YSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGS 123

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G +   I+  D + V+ DA  V V G  + L+ KE++++      K   L++E  LN+++
Sbjct: 124 GTSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     + + ID  + KLR KL         I+TVWG GY L  + 
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGPKGDN---IKTVWGMGYKLEVDG 226


>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
 gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Blautia hansenii DSM 20583]
          Length = 235

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 12/236 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLT 55
           M+ +L+I+DDK L   ++  ++ EN +      G +G+++ K  +    F  IILD+ + 
Sbjct: 1   MKQVLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMMP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + GF+VL+ +R    + PV +L+  S+ EDKV GL+ GADDY++KPF+  EL AR+ ++
Sbjct: 61  YMNGFQVLKKIREVS-NIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHSL 119

Query: 116 VRRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RR              I   D++++   ++V V+G  + LTGKE+ ++  L+  K    
Sbjct: 120 IRRYTTLNPAFSEETDCICLKDMTIDRGNRSVTVRGALVELTGKEFDLLVFLASNKGRIF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           TK+     +++     +   I  FI KLRKK+        Y+ TV G GY   + A
Sbjct: 180 TKKQIYTQVWEDEYAFDDSNIMSFISKLRKKIEPNPEQPFYVLTVRGVGYRFNKEA 235


>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++L   +   L++E F V V   GE+          D ++LD  +  + G E
Sbjct: 5   RILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      D+VRGL +GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 65  LCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRRA 124

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H   L+V GD+ ++  +  +  QG  IHL   E++++E L        ++E  L+ +
Sbjct: 125 KPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 185 WGHDVYIDERTVDVHVGRLRKAI-NRPRQSDPIRTVRGSGYSFDE 228


>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
 gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD      +      E F V     G +G+       FDA++LD  L  + G  
Sbjct: 4   RVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++++R A ++TPV +L+ MS+++++V+GL++GADDY+ KPF+ +EL+AR+ A++RR + 
Sbjct: 64  LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++   DL ++L  + V   G  I LT +E+Q++E    RKN  +T+ M L  ++D
Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   I+DV I KLR+++   A     I TV G GY++ +
Sbjct: 184 YHFDPNTNIVDVHISKLRRQIDEGAEVP-LITTVRGAGYMISD 225


>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ ++       L+   F V + D G +G+EL +    D +ILDL L  + G EV
Sbjct: 5   ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR       + +L+  S   D+V GL+ GADDY+ KPF+  ELVAR+ AI+RR R  
Sbjct: 65  AARLRQDS-DVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRST 123

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +    + ++ D + V V    I LT  E+ ++  L+ R    L++E  L+ ++
Sbjct: 124 TPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +++DV++ ++R+KL   AG  + I+TV G GY   + A
Sbjct: 184 GNDFYGTDRVVDVYVGQVRRKLEAVAGV-SLIQTVRGVGYKFIDEA 228


>gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 225

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+    H+I+  L+   F V +   G     L     + AII DL L  + G+
Sbjct: 1   MKLLVVEDEPKTLHAIQQGLEESQFEVDIAYDGLLAKRLALKNTYAAIITDLILPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR   +STP+ +L+ +   ED+++G  +GAD Y++KPF   EL+AR+R++ +R  
Sbjct: 61  ELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQFAELLARVRSLTKRGT 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G + +NLDAKTV   G  I LT +E+ ++E L   +   L+K     H+
Sbjct: 121 QVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMRNQGRVLSKPAIAEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +    +++V+I  LRKK+ +    K  I T +G GY+ +E 
Sbjct: 181 WDLNFDTGTNVVEVYINYLRKKI-DKGFDKKLIHTHFGMGYMFKEE 225


>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TPV IL+      D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 64  ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGTSE 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                V   + ++ D++   +    +HLT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 124 TP---VVQGVRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                K +D+ I  LR+KL + A    YI TV G G+   
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGFRFE 220


>gi|229090161|ref|ZP_04221411.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693238|gb|EEL46949.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVIPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EQVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 222

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD A+A  +EL LK E F + + + GE G+      +FD I+LD+ L  I G E
Sbjct: 3   RILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVMLPKISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR +K +TPV +L+    + DKV GL SGA+DY++KPF  EEL+ARIR I R    
Sbjct: 63  VLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFR--EK 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +  G+L++N D   V V+G  + LT KEY+++  L + +N  L++E  + +++  
Sbjct: 121 TTNNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  I+DVFI  +R+KL +       I+T+ G GYV+++N
Sbjct: 181 EYYGDTNIVDVFIKNIRRKLEDV-MDVRMIQTIRGIGYVIKDN 222


>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 233

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   + V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLT 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   IV G+L ++L  +TV  +G  + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                    + +DV I KLR+K  + A     I+TVWG+GY+   +  +
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDNADEARKIKTVWGKGYLFSRSEWE 232


>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Edwardsiella tarda EIB202]
 gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
           FL6-60]
          Length = 220

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+             L +   +  IILDLGL  + G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I  PV IL+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   D+ ++L ++ V   G  + +T KE+ ++  L +R   T+++E+    LY 
Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +DE     ++V I  LR+KL     GKN I+T+ G GY L +  
Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GKNRIKTLRGVGYRLEKTP 220


>gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 243

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/245 (28%), Positives = 125/245 (51%), Gaps = 19/245 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ ++A  + +  + E + V     GE+G+   K     FD I LDL L  + 
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSL 163
           +   A++               + T    ++   +   + G +I  LT KE+ ++  LS 
Sbjct: 121 AEVGAEAGAEQAAPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSK 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 SPKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDD 238

Query: 224 NAKDE 228
           +  D+
Sbjct: 239 SGLDQ 243


>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  S+   L+ EN+ V     G +G +     E+D I+LD+ L  + G+
Sbjct: 12  MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ LR  K S PV +L+   +++D+V+GL  GADDY++KPF+ EEL+ARIRA++RR+ 
Sbjct: 72  EFLQKLRPTKTS-PVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++   DLS++  A+ V  +G  + +T +EY +IE L+L +   +++     HL+D
Sbjct: 131 GQPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D     ++DV +  LRKKL         I T  G GY + 
Sbjct: 191 EDDSTLSNLLDVHVSNLRKKL-----APELITTRRGHGYSIE 227


>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 230

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   ++     E F   +   G + +++   Y    ++LD+ +    GFEV
Sbjct: 5   ILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNKYSPLLLLLDVMMPKKDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + P+ +++  +   D++ GL  GADDYI KPF+  E++ARIRAI+RR   S
Sbjct: 65  CREIRQ-NSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDIS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I    L +N+    V+V G  ++LT KE +++ LLS       +++  L+ ++
Sbjct: 124 DEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I +LR K          I+T+WG GY   
Sbjct: 184 GYEYFGDARTVDTHIKRLRAKTDITDTSAWDIKTIWGVGYKFE 226


>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 227

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  + L L  + F V++   GE G+   +     A +LD+ L  + G E+
Sbjct: 10  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A   TPV  L+      D+V GL+ GADDY++KPF+  EL+AR+RA++RR+ G 
Sbjct: 70  CRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRRTAGV 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+     G ++++   +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 130 PAEQPRTLGAVTLDPARRTVTAGGTPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +DV + ++R KL   +     I T  G GY
Sbjct: 190 AAHAGTRTVDVHVAQVRAKLGPDS----VIRTHRGVGY 223


>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 224

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++ +++ L LK  +  V     GEDG+E    +  D ++LDL L  I GFE
Sbjct: 3   RVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A  ST + +LS      D V GL++GADDY+ KP   + L ARIRA++RR+ G
Sbjct: 63  VCRRIRAAS-STSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   G L V+  + TV   G +I L   E +++  LS       +++  L  +++ 
Sbjct: 122 VPSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVWEH 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +++D  + +LR K+ +      Y++TV G GY  
Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGYRF 221


>gi|315634592|ref|ZP_07889876.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
 gi|315476540|gb|EFU67288.1| two component response regulator [Aggregatibacter segnis ATCC
           33393]
          Length = 223

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + I++ L    F V     G+ G+   +   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDALIGNGIQIGLTKSGFAVDWFTDGKSGLAAAQAAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A R      PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  DVLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALVEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I    +  + + + V +    I LT +EY+++EL  L K   LT++     LY+
Sbjct: 121 GHASPIIQHSCVKFDPNQRKVLLNEQEIALTTREYKLLELFMLNKERVLTRDFIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             DE     ++V I  LR+KL     GK +I TV G GY L +N ++
Sbjct: 181 WDDEVNSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDEE 222


>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
 gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  +E+ LK E F+V+    G++G+ + K+  +D I+LD+ L  + G E
Sbjct: 4   KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+    I DKV G   GADDY++KPF+ EEL+ARI+A++RR++ 
Sbjct: 64  VCKRIRETS-QVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEV--QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               + +    DL++N     V      + I L+ +E+++++ L L K   L+++  L  
Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++         I+D++I  LR K+ +    + +I+TV G G++ +
Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIFK 226


>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
 gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
 gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
 gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/227 (38%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  +TV      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDAIETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYVIRE 228


>gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 265

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   +E  L  +N+   +     +  ++     FDA++LDLGL D  G 
Sbjct: 45  MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R +  + PV +LS   ++ D+VRGL  GADDY+ KPF+ +E+VAR+R+++RR  
Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G + ++L  ++V   G  + LT +EY ++EL        LT+ +    +++
Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E  +IDV++ +LR+KL  A G    I+T+ G GY L
Sbjct: 225 ASYDLETNLIDVYVRRLRQKLE-APGQPPLIKTIRGTGYQL 264


>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
 gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
          Length = 239

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  GD  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSSEESVVEFGDFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
 gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
          Length = 239

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  S P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ +        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 241

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +  I+DK++G  SGADDY++KPF+ EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +       G  I LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++    + +++ I V I  LR KL        +I+TV+G GY L  + ++
Sbjct: 183 LREVWGYEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLELSTEE 235


>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
           gilvum SL003B-26A1]
 gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 231

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 124/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L+  +   L++E + V   + G++     +  + D ++LD  L  + G E
Sbjct: 3   KVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   PV +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI+RR+
Sbjct: 63  LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     +++ +GD+ ++ +   V   G  IHL   E++++E L        ++E  L+ +
Sbjct: 123 RPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N    K+ I TV G GY   + 
Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAI-NRGKVKDPIRTVRGAGYAFNDQ 227


>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 231

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I + L  E FNV     G + +EL +  E + +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRETS-SIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  +  +   G L +N + K V V G  I LT  EY ++ LL        + +   
Sbjct: 123 GNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EKIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 231


>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ LK + F V     G + +++ + +  DA ILD+ +  + GF 
Sbjct: 9   RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   +++D++ GL  GADDY++KPF+ EE+V R++ I+RR   
Sbjct: 69  LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I   DL+++ ++  V   G  + L+  E++++  L +     L+K   L+H+
Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  +++ ++  LR+K+       + I+TV G GYVLR
Sbjct: 189 WNYDFGGDGNVVESYVSYLRRKVDKD--EPHLIQTVRGVGYVLR 230


>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL   A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGEKA---KHIGTVIRVGYKFEE 225


>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
 gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 245

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   GH I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGHAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+      +  G +      IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIREP 241


>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
 gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanibulbus indolifex HEL-45]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED+ A    +   L++E F V   + GE+ + L      D +ILD  +  + G E
Sbjct: 7   QVLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIE 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R +    PV +LS  S   D VRGL++GADDY+ KP+N  EL+AR+R  +RR+
Sbjct: 67  VCRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRT 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A  +L+   D+ ++ +   V   G  + L   EY+++  L  +     +++  L+H+
Sbjct: 127 RPAAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV I +LRK L+   GG + I TV G GY L
Sbjct: 187 WGRDIYVDTRTVDVHIARLRKALTREGGG-DPIRTVRGAGYAL 228


>gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator
           [Ralstonia pickettii 12J]
 gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
 gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA]
          Length = 224

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I   L+ + F V     GE      +   + A ILDLGL  + G 
Sbjct: 1   MRILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGEAAWRELRTDAYVAAILDLGLPRMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R A I+ P+ +L+   +I D+VRGL  GADDYI KP +  EL AR+RA+VRR+ 
Sbjct: 61  DVLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +    + +   ++TV   G  + L+ +E+ ++  L L     L++E     LY 
Sbjct: 121 GHPTEQLRARGIVLEPASRTVFCNGRAVALSTREFDLLHALMLNAGRVLSREQLEQCLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAK 226
              E     ++V I  LR KL +       I TV G GY+L R+NA+
Sbjct: 181 WGQEVGSNSVEVHIHHLRVKLGSD-----LIVTVRGVGYMLPRDNAE 222


>gi|28211448|ref|NP_782392.1| two-component response regulator [Clostridium tetani E88]
 gi|28203889|gb|AAO36329.1| two-component response regulator [Clostridium tetani E88]
          Length = 240

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDDK + + I   L  E F+V     G +G    +  +F  IILD+ L  + G E+
Sbjct: 14  VLIVEDDKEINNLISKALIKEGFSVVQAFEGIEGYSKYRKIDFSIIILDIMLPYLNGIEI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           ++ +R   +  P+ ++S      D++ GL+ GADDYI KPF   ELVARI++ +RR    
Sbjct: 74  MKKIREESV-VPIILISAKDEEYDRIIGLELGADDYIVKPFFVGELVARIKSQLRRYIDF 132

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S I  GD+ ++L+   +   G +I LT KE+ +++L     N   TK     +
Sbjct: 133 HKNDEVISRIQKGDIILDLNNYCIYKNGEKIDLTAKEFGLLKLFFTNPNRVFTKMQIFEN 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +   I V I +LR K+ +      YI TVWG GY L
Sbjct: 193 VWHEEYRGDDNTIMVNIRRLRNKIEDDPNNPEYILTVWGIGYKL 236


>gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
          Length = 224

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ +     ++ IILD+ L +I G+
Sbjct: 1   MRILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDLPEIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ++R     TPV +L+    + DK++G  SGADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  GVLASIRR-NSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGE 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++   DL ++         G RI LT KE+ ++ LL  R    L++   ++ ++
Sbjct: 120 QVSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFENKLIHTLRGVGYVLE 221


>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 250

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 112/240 (46%), Gaps = 21/240 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGLTD 56
           +L+IEDD  LA  +   L    F V     G  G+                I+LDL L D
Sbjct: 6   LLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLDLMLPD 65

Query: 57  IPGFEVLRALRV---AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           + G ++ R +R    A   TP+ +L+      D+V GL+ GADDY++KPF   EL+AR+R
Sbjct: 66  MDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPRELLARVR 125

Query: 114 AIVRRSR------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
           A++RR              G     +  G L+++ DA+TV VQG    LT  ++ ++  L
Sbjct: 126 ALLRRHAQSSTSLSTDEGTGSGHPPLHFGSLTIDRDARTVTVQGRSCELTSYQFDLLVTL 185

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + R    LT+E  +  +     E   + IDV + ++R  +         I TV G GYV 
Sbjct: 186 AERAGRVLTREQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVF 245


>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 239

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F+V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQTT 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 ELPGAPSTEESVVEFGEFRLNLGTREMFRGEESMPLTSGEFAVLKALVTNSREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K+
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGKE 238


>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 234

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           ++L+ ED+ ++   + + L    + V   + GED ++  +  E  FD  +LD+ +  I G
Sbjct: 3   KVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R       + +LS  S   DK+  L SGADDYI+KPF+  EL+AR+ A+ RR 
Sbjct: 63  MQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRRV 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    S I +G   +NL ++TV   G +I LT  EYQ++E     +N  L +   
Sbjct: 123 NRSAVKPEEASTITSGPFVLNLKSRTVLKNGRQIDLTQVEYQIMEYFFKNQNAALDRSSI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LNH++      + KI+DV I ++R K+ +      YI T+WG GY  
Sbjct: 183 LNHIWGESYYGDDKIVDVNIRRIRMKIEDEPSNPKYILTIWGFGYKW 229


>gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
 gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni CNB-2]
 gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator
           [Comamonas testosteroni S44]
          Length = 230

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  +   L  E F V V   G DG+ L    ++D I+LD  L  I G 
Sbjct: 1   MKILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL ALR  K  TPV +L+    +ED+V+GLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 61  AVLAALRQTK-QTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSG 119

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +   DL ++L  +     G RI LT KE+ ++ LL  R+   LT+   
Sbjct: 120 PSVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++D   + E  +++V I +LR KL +    ++ + TV G GYVL 
Sbjct: 180 ASQVWDMNFDSETNVVEVAIRRLRLKL-DQPFEQHLLHTVRGMGYVLE 226


>gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 232

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G++
Sbjct: 7   KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVMLPDVNGWD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR   
Sbjct: 67  IVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 126

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++D
Sbjct: 127 VIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 187 MNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 227


>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 226

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A   TPV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTAH-QTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V      I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 -SVFTRLSINGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   +DV I +LR K+ +    K  I TV G GY L+  A
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLITTVRGMGYRLQAEA 222


>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 229

 Score =  267 bits (683), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 127/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 1   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR ++  TPV +L+  + +ED+VRGLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 61  AVLAALRQSR-QTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGL 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    +
Sbjct: 120 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   + E  +++V + +LR KL +A   +  + TV G GYVL 
Sbjct: 180 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFEQPLLHTVRGMGYVLE 224


>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  +++  L +  + V+    GE+ +E    +  D I+LDLGL  I G E
Sbjct: 7   RILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +LS   +  DKV+ L  GADDY+SKPF   E++AR+R  +R S  
Sbjct: 67  VCRKVREQS-NLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +   G L V+   + V+V+G  + LT  EY +++ L       +T++M L+ +
Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      E   + V+I +LR+K+        +I T+ G GY       +
Sbjct: 186 WGTGYGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGYRFNSEEPE 234


>gi|228913796|ref|ZP_04077421.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228932498|ref|ZP_04095379.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827188|gb|EEM72941.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228845735|gb|EEM90761.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 234

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 225

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  +   L+     V     G DG+ L     +DA+I+D  L  + G 
Sbjct: 1   MRILLIEDDSEAAAYMAKGLREAGHVVDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +++ALR A  +TPV +LS +  ++D+VRGL++G DDY+ KP+   EL+ARI A+ RR S
Sbjct: 61  AIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 STQPETRLKVEDLEMDLLARTVTRGGQEIDLQPREFRLLEYLMRHGGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+         I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFELP-LIHTVRGAGYTLR 222


>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
 gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
           29799]
          Length = 228

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--IILDLGLTDIPG 59
           ++L++ED+  +   + + LK   +     + GE+ +   +    D    +LD+ L D+ G
Sbjct: 3   KVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRN-PDIKVALLDIMLPDMDG 61

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV R +R +     + +L+  +   DKV GL +GADDY++KPF+  EL ARI A+ RR+
Sbjct: 62  FEVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRT 121

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G  +     I      +N   +T+E  G R+ LT  EY +++L   +    L++E  L+
Sbjct: 122 GGAEKESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEILD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E+KI+DV I +LR K+ +      YI TVWG GY  
Sbjct: 182 TVWGRDYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYKW 226


>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 220

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V   + GE  +       +D  +LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLRALR    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  EVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I  G+L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL         I  V G GY++ ++A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGAD-----LIRNVRGLGYMIAKDA 220


>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 233

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +   L++  F   V   G   +E  + +E D I+LD  L  I G E
Sbjct: 10  RVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+ + + +D++ GL+ GADDY++KPF+  ELV RI++++RR+ G
Sbjct: 70  VTRRVRAI-CDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALG 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A S    G L ++   + V   G  + LT +E+ ++  L    +   ++E  L H++
Sbjct: 129 PLSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 ++  + V + +LR K+ +       ++TVWG GY+LR   
Sbjct: 189 GWTF-GDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLLRSEP 233


>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV   GY   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVGYKFEE 225


>gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
 gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3]
          Length = 229

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLEK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R+K+      K+YIET+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 231

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++IED+  +A+ +   LKS  ++ +V   G+ G++L +    D ++LDL L  + G +
Sbjct: 4   KIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTD 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V +A++ +      P+ +L+      D++ G + GADDY+ KPF+  EL+ RI+ ++RR+
Sbjct: 64  VCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRN 123

Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +      L+ + +A T+ V G   HLT  E+ +       +   L++E  L++
Sbjct: 124 VNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLSN 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +    E   + +D  + +LRKKL   A   +++ETV G GY ++
Sbjct: 184 AWGYEFEGYSRTVDTHVRRLRKKLGPYA---DWLETVRGIGYRMK 225


>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 233

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L          +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+   + ++   + V V    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|169797190|ref|YP_001714983.1| transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213156019|ref|YP_002318064.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|293610351|ref|ZP_06692652.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|301347407|ref|ZP_07228148.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB056]
 gi|301513259|ref|ZP_07238496.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB058]
 gi|301595578|ref|ZP_07240586.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB059]
 gi|332850792|ref|ZP_08433024.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332866185|ref|ZP_08436891.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|169150117|emb|CAM88011.1| Transcriptional activator protein [Acinetobacter baumannii AYE]
 gi|213055179|gb|ACJ40081.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB0057]
 gi|292827583|gb|EFF85947.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|332730451|gb|EGJ61768.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|332734759|gb|EGJ65854.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 227

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLSGKHQALSEEYDLIILDVMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  + P+  LS    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++RR +
Sbjct: 61  NIINDIRKSGKTMPILFLSARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S I+   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 QKEDSNIITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I+ + G GYVL 
Sbjct: 181 DMNFDSDTNVVEVAIKRLRNKIDSNFS-PKLIQNIRGMGYVLE 222


>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 248

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ +    +E  L    +NV     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   DL ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
 gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603]
          Length = 229

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVILEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLKK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V + G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R+K+      K+YIET+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227


>gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 228

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ +A  +   L+ E + V+    G  G++     + D ++LDL L DI G 
Sbjct: 1   MNILVIEDEERVADIMTKYLEKEGYKVFTCYTGRSGLDCFYKNKIDIVLLDLMLPDIQGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R    +  + +++   +++ K+ G   GAD+Y+ KP +  E+VAR++A+  R +
Sbjct: 61  EICAEMRQVS-NVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQ 119

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++    G   + L  + V++    I LT  E+ ++  L+       +++  +  
Sbjct: 120 REENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +   + IDV I  LRKK+        YI+TV G GY   
Sbjct: 180 VMGIDFDGFDRTIDVHIKNLRKKIETDTKNPRYIKTVTGVGYKFE 224


>gi|257464655|ref|ZP_05629026.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
 gi|257450315|gb|EEV24358.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Actinobacillus minor 202]
          Length = 232

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 130/232 (56%), Gaps = 5/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F V +   G DG+      ++  IILD+ L  + G+
Sbjct: 1   MKILVVEDEIKAGDYLKQGLSEAGFMVDIARNGVDGLHFALTEDYQLIILDVMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A+   P+ +L+    +EDKV+G + GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QVLQMLRQAEKKFPILLLTAKDQVEDKVKGFELGADDYLVKPFAFAELLARVRTLLRRIP 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    + +   DL ++L  + V   GHRI LT KE+ ++ELL  R+   L + +  +
Sbjct: 121 NEEKKIQTTSLKIADLELDLLKRKVSRAGHRIDLTSKEFALLELLIQRQGEVLPRMLIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H++D   + +  +IDV I +LR K+ + +     I TV G GYVL    +D+
Sbjct: 181 HVWDMNFDSDTNVIDVAIRRLRNKI-DDSYTPKLIHTVRGVGYVLDLREEDD 231


>gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 228

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +E  L+S  F   V     + ++L     FD +ILDLGL    G +
Sbjct: 3   RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    S P+ IL+    I DK+   + GADDY++KPF  EEL+ R++A +R + G
Sbjct: 63  VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S++   ++ ++L  + V+V    + L+ +E+ + E         L++E  L+ 
Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   I+DV++  LRKKL N       IETV G GY L+
Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN-----ELIETVRGMGYRLK 222


>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 230

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD ++A      L+ + F   +   G +G+      +FD I+LDL L  I G+E
Sbjct: 4   KILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K   P+ +++      DK+RGL  GADDYISKPF+  ELVAR++A + +   
Sbjct: 64  ICRKIR-GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G + +N     V +  H +    KEY+++  L    +   +KE   
Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++K + V I +LR+K+        YI+TVWG GY  +
Sbjct: 183 ERIWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGYHFK 229


>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
           with phor [Ralstonia solanacearum CFBP2957]
 gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CFBP2957]
          Length = 237

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 107/232 (46%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL  GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEM 173
                 ++    L ++     V            + L   E++++  L        ++  
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L+   G  N IETV G GY L  N 
Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAP-GGYSNMIETVRGSGYRLARNP 235


>gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 248

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 70/244 (28%), Positives = 124/244 (50%), Gaps = 19/244 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           ++L+IED+ ++A  + +  + E + V     GE+G+   K     FD I LDL L  + G
Sbjct: 7   KLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR+
Sbjct: 67  MQVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 126

Query: 120 RGHAQS--------------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLR 164
              A++               + T    ++   +   + G +I  LT KE+ ++  LS  
Sbjct: 127 EVGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKS 186

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++
Sbjct: 187 PKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKFDDS 244

Query: 225 AKDE 228
             D+
Sbjct: 245 GLDQ 248


>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
 gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
          Length = 234

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L +  + V V   G++ +E    +  + I+LDLGL  + G E
Sbjct: 4   RILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +LS      DKV  L  GADDY+ KPF  +EL+ARIR  +R S  
Sbjct: 64  VCRRIRGWS-QVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + + + ++  G+L ++   + V ++GH +HLT  EY+++ L +      LT  M L  +
Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E E+  + VFI +LR+K+        YI T  G GY  
Sbjct: 183 WGANYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGYRF 225


>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
 gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
 gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
 gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
          Length = 233

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +A  IE+ LK++ + V    LG++ ++  +   FD  +LD+ L DI GF+
Sbjct: 4   KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R      PV +L+      DK+ GL  GADDYI+KPFN  E+VARI+  +RR   
Sbjct: 64  IVQKIRENHF-FPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S   +   I    L +N    T  + G  I LT  E+ ++  L+ RK   +  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++  +       +   I +LR+KL        +I+TVWG GY + 
Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
 gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
           DSM 5476]
          Length = 231

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPG 59
           RIL+ ED+  +   + + L+   + V     GED ++       +FD  +LD+ +  I G
Sbjct: 3   RILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           FEV + LR    +  + +L+  +   DKVRGL  GADDY++KPF+  ELVAR+ AI RR 
Sbjct: 63  FEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHRRV 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++      IV+G   +N  ++ +   G  + LT  EYQ++EL    +N  L +   
Sbjct: 123 NMIANQPQQVKSIVSGPFELNPKSRILTKNGVPVDLTQVEYQIMELFMKNQNVALDRTHI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN ++      +VKI+DV I +LR K+ +      YI T+WG GY  
Sbjct: 183 LNEIWGDNYYGDVKIVDVNIRRLRMKVEDEPSSPKYILTIWGFGYKW 229


>gi|254829734|ref|ZP_05234389.1| hypothetical protein Lmon1_00195 [Listeria monocytogenes 10403S]
          Length = 228

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  N      G+ G E     ++D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEINATFVHDGKMGYEAFFKDDYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  Q   +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
 gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
           [Eubacterium cellulosolvens 6]
          Length = 231

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L   +F+V     GE+ + +  +      IILD+ +  + G+
Sbjct: 5   KILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  S   D++ G + G D+YI+KPF+ + LVAR+ AI+RR+ 
Sbjct: 65  QVCREIRKES-KVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTN 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  G +++N  A    V G  + L+ KE++++          L++E  LN+++
Sbjct: 124 QISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +     + + ID  + KLR K+       NYI T+WG GY     ++DE  
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGEKG---NYIRTIWGMGYKFEVESQDEKA 231


>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
 gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
          Length = 235

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ + F V     G  G+++ + +  DAI+LD+ +  + GF 
Sbjct: 9   RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR   +  PV  L+   S++DK+ GL  GADDY++KPF+ EE+V R+R I+RR+  
Sbjct: 69  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   D+ ++ D + V  +G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE 
Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 233


>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
 gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
          Length = 239

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+          YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMGEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 266

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A++++  L+   F V V   G  G  L     +D +ILDL L    G+E
Sbjct: 41  RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+ +L+ +  ++DK++  + GADDY+ KPF+  EL+ARIR  ++R+  
Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      IV GDL ++ + K V   G +I LT KEYQ++E L+L K   ++K +    
Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D   +    +I+V++  LRKK+      K  + T  G GY L E 
Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNK-LLHTKTGMGYYLAEE 266


>gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli]
 gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli]
          Length = 224

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L   I+  LK   + V     G+  +   K   FD I+LDL L  + G 
Sbjct: 1   MRILLVEDDGSLGDGIQKGLKQYGYTVDWLTDGQTALSSIKTESFDVILLDLNLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISK-PFNKEELVARIRAIVRRS 119
            VLR +R A I+TP+ IL+   S+ED+V+GL SGADDY SK  F+ +EL ARIRA+ RRS
Sbjct: 61  SVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRRS 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + A  L+   D+ +N  A TV ++G  ++L+ +E+ +++ L       ++++     L
Sbjct: 121 SNNRASPLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDSLNQCL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           Y   D+ +   ++V +  LRKKL       ++I T+ G GY+
Sbjct: 181 YGWEDDIDSNTLEVHVHNLRKKL----AHTHFIRTIRGVGYM 218


>gi|52144209|ref|YP_082619.1| response regulator [Bacillus cereus E33L]
 gi|196036495|ref|ZP_03103891.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228944829|ref|ZP_04107192.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|51977678|gb|AAU19228.1| response regulator [Bacillus cereus E33L]
 gi|195990969|gb|EDX54941.1| DNA-binding response regulator [Bacillus cereus W]
 gi|228814857|gb|EEM61115.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGCVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 787

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 118/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ LA  +   L  +++ V + + G+ G E  +   +D I+ D+ L  + G 
Sbjct: 1   MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    STP+ +++      D++RGL +GADDY+ KP N  EL AR+RA++RR  
Sbjct: 61  TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++     V      + LT KEY ++E+L        ++   + HL+ 
Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P+ + +   I  LR KL    G  ++IE V+G GY L+
Sbjct: 181 FDDPPQEETVKSHIKGLRHKLK-VVGAVDWIENVYGLGYRLK 221



 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  ++  ML+     +   D      E+ +    D +ILD+ +  I G E+
Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +A+R        P+  L+    +E   +   +G DDY+ KP    EL+ARI   + RSR
Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERSR 621



 Score = 36.0 bits (83), Expect = 4.0,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPG 59
           ++LLI+ D  L   ++ +  S           E      +    D ++L++         
Sbjct: 376 KLLLIDPDLQLGSQLQQVAYSMGMRWQQITTLEAAKNFLQTTSPDLVVLNVDEIGQREET 435

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF 103
             ++  L       PV  L+    + D+V   QSGA  ++ KP 
Sbjct: 436 LALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPV 479


>gi|206976559|ref|ZP_03237465.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206745242|gb|EDZ56643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 234

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIR-KKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    +   +   G DG+ L    E+  +ILD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHSIKLIQTVRGMGYVLEVPEEE 227


>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
 gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
           PR4]
          Length = 243

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L+ + F V     G  G+++ + +  DAI+LD+ +  + GF 
Sbjct: 17  RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR LR   +  PV  L+   S++DK+ GL  GADDY++KPF+ EE+V R+R I+RR+  
Sbjct: 77  LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   D+ ++ D + V  +G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE 
Sbjct: 197 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 241


>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
 gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
           consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Haemophilus parasuis
           SH0165]
          Length = 223

 Score =  266 bits (682), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   ++L L    F+V     G+ G++      +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++ R A    PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH   +I    +  + + + V ++   + LT +EY ++EL    K+  LT+      LY 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR+KL     GK +I TV G GY L +N +
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDE 221


>gi|75812821|ref|YP_320438.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75705577|gb|ABA25249.1| multi-component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 725

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 1/235 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++E+D+  A ++   L ++ F V         +EL +  E+D I+LD+ L D  G 
Sbjct: 1   MKLLIVENDRDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +L+   +  D++ G ++GADDYI+KP+   EL+ARIRA++RR  
Sbjct: 61  RLCRQLRTQNQQEPILLLTRKVNPADRIAGFEAGADDYITKPYELSELLARIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY+++EL          +   L+ +  
Sbjct: 121 TVLTKVLCWGQLQLDPNNCEVMCQGKGLHLTPKEYKLLELFLRHPRRIFDRRTLLDRICS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             + P  + I   I  LR+KL  A    + IET++G GY L+ +  +E  +  E 
Sbjct: 181 IDECPGEEAITTQIRGLRRKLQMAGLNSDPIETLYGLGYRLK-SVPEEREQGSEQ 234



 Score =  107 bits (268), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +E  L+   F V          +  +    D ++LD+ +    G E
Sbjct: 607 RLLIVDDDPALLSILEAQLQPWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSGIE 666

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           + + ++        PV +LS  +  +   R L +GADDYI KP  + +L+ RI
Sbjct: 667 LCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 719



 Score = 73.4 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           +LLI+DD  L   ++    + + ++          +  ++   DAIILDL   +    G 
Sbjct: 483 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLTFPNTTESGL 542

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            +L  L+    + PV +L+G+  +  +V   + GA+ ++ KP    E+   +  ++ R
Sbjct: 543 TLLAQLKHQFSTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHR 600


>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
 gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 230

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++A  +EL L++E++ V+    G++ ++  K   +D  ILD+ + D+ GF +
Sbjct: 5   ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLDGFSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      PV +L+  ++  DK+ GL  GADDY++KPFN  EL AR++  +RR   +
Sbjct: 65  LKKIREDYF-FPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTRY 123

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q +     L +N D     +    ++LT  E+ ++  L  ++ + +T E   
Sbjct: 124 NTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEELF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++  +       +   + +LR+K++  A    +++TVWG GY + 
Sbjct: 184 EAVWQEKYLDNNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTIE 230


>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 240

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   + ++LK E F  +Y  + GE G  L K    D I+LD+ L D  G+
Sbjct: 9   KILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIMLPDEEGY 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R +  + P+  +S  +   D+V G   G DDYI+KPF+ +E+  RI+AI+RRS 
Sbjct: 69  EVCKKIRKSS-NVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRRSS 127

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            H +     +++  G   ++ +   V   G  I L  KEY+M   L+   N  ++KE   
Sbjct: 128 YHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKEKLC 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + ++          I V I KLR+K+        +I  + G GY      KDE+
Sbjct: 188 SEVWGEDYIGFDNTIMVHIRKLREKIEKDPSNPKHILNIKGLGYKFV--IKDES 239


>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
 gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter denitrificans OCh 114]
          Length = 229

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V   + GE+ + L      D I+LD  + ++ G EV
Sbjct: 8   VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR R
Sbjct: 68  CRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ +N  +  V    + + L   E++++     +     ++E  L+ ++
Sbjct: 128 PAATGGQLEYEDIVLNAASHRVSRGENELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGSDPLRTVRGAGYAL 228


>gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   AH +   L    F V V   G DG    +  E+D IILD+ L  + G+
Sbjct: 1   MRLLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R    +TPV  L+   +IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QLLQLVRQRG-ATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  + V   G RI LT KE+ ++ LL+ R+   L++ +  + +++
Sbjct: 120 LREAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +  +++V + +LR K+ +       I TV G GY L   A DE 
Sbjct: 180 LNFDSDTNMVEVAVRRLRAKV-DDPYMPKLIHTVRGVGYQLE--APDEA 225


>gi|83748410|ref|ZP_00945433.1| CzcR [Ralstonia solanacearum UW551]
 gi|83724926|gb|EAP72081.1| CzcR [Ralstonia solanacearum UW551]
          Length = 248

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 25  MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+RR  
Sbjct: 85  QVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGP 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 144 MRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWD 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 204 VNFDSNTNVVDVAIRRLRAKV-DDPFEHKLIHTLRGMGYVLDTVAR 248


>gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K     +   L    F V + D G +G  L    ++D +ILD+ L D+ G++
Sbjct: 7   KILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIMLPDVNGWD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR   
Sbjct: 67  IVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 126

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S     DLSV+L ++ V     RI LT KE+ ++E     +   L + +  + ++D
Sbjct: 127 VIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   IDV + +LR K+ N       I+TV G GY+L 
Sbjct: 187 MNFDSDTNAIDVAVKRLRAKIDNDF-EPKLIQTVRGVGYMLE 227


>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
          Length = 231

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ +  + G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 232

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 128/230 (55%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F V     G + + +     + D  +LD+ +  + GF
Sbjct: 3   KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H ++       +G  +++L AK  +  G  I LT  E+ +I+    ++NT L++++ L+
Sbjct: 123 VHRETAAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++      + KI+DV I +LR+K+ N      +++TVWG GY  +  ++
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGYKWKGQSQ 232


>gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 222

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L  E +NV     G+  ++  +   +D  I+D+ + +  G 
Sbjct: 1   MRVLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMIPNKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R A I  PV  L+  +  +D VRGL +GA DY++KPF   EL+AR+R ++R   
Sbjct: 61  TVLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  G L V+++ +     G  I LT +EY ++E L+  +N  +T+E    ++++
Sbjct: 121 PVNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+    +IDV+I  LR+K+ +    +  I T+ G GY L 
Sbjct: 181 IDDDVNSNVIDVYIRYLRRKIDDN-YEEKLIHTIRGVGYKLE 221


>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 246

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD ++A  +   L+ E F+V     G  G  L    + D ++LD+ L  + G EV
Sbjct: 8   VLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R   +  P+ +L+      D+VRGLQ GADDYI KPF+ +ELVARI+AI+RR +  
Sbjct: 68  CELIRRESV-VPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126

Query: 123 AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +GD        + ++  A+ V  +  ++ L+ +E++++ LL       L++   
Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+ ++      + K +DV+I  LR+K+        YI+TV G GY   +    E
Sbjct: 187 LDRIWGEDWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGYRFTDPQTPE 240


>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 235

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V   G     ++ L   E++++           ++   L
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 187 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 235


>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K + + +++ L +  + V  +  GE+ +++     FD +ILD+ L    G+ 
Sbjct: 3   KILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           + R ++    S PV I++   +  D+V G + GADDYI+KPF+ +  +AR++ +++ ++ 
Sbjct: 63  ICREIKE-YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTI 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I  G L +N  + +V  +G  + L  KEY+++      KN  L++E  L  ++ 
Sbjct: 122 VNNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + IDV I  LRKK+     G  YI+T+   GY   
Sbjct: 182 YGFVGNDRTIDVHIKNLRKKI-----GGEYIKTIRSVGYKFE 218


>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
 gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
          Length = 245

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVTRAGQTIDLSSTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+ +                IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 241


>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis H37Rv]
 gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 02_1987]
 gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T92]
 gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis 210]
 gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
 gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
 gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis C]
 gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
           protein TcrA [Mycobacterium tuberculosis H37Ra]
 gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis F11]
 gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T46]
 gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis K85]
 gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis 02_1987]
 gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis T92]
 gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis W-148]
 gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 253

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 84  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246


>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ + H I + L++  F+      G++ +E  +    D I+LD+ +    GF V
Sbjct: 9   ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGFSV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      PV  LS      DKV+GLQ G DDYI KPF+  EL ARI A++RRS   
Sbjct: 69  CERVRAQ-YEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSGSI 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   ++   G ++++  A++V+V+G  I LT KEY+++      ++  L++E  L  ++
Sbjct: 128 SGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQIW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++ +D  I  LR KL    G  +YI+TVWG GY   
Sbjct: 188 GMDYLGSLRTVDTHIKTLRMKL----GAGDYIKTVWGIGYKFE 226


>gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375]
          Length = 214

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 10/214 (4%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             E + V     G + +E  +  + D IILDL L +I G EV + +R    S P+ +LS 
Sbjct: 2   TKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPILMLSA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA---------QSLIVTGD 131
             S  DKV GL+ GADDY++KPF+  EL AR++A++RRS+               I  GD
Sbjct: 61  KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGD 120

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L +  DA   +  G  + LT +E++++  L+      +T+E  L  ++      +V+ +D
Sbjct: 121 LEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVD 180

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           V + +LR+K+ +      YI T  G GY +R NA
Sbjct: 181 VTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA 214


>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
           pseudintermedius ED99]
          Length = 225

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ LA  IEL  K EN+ V V   G  G+     ++FD I+LDL L ++ G E
Sbjct: 3   KVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+ +++    I DKV GL  GADDYI KPF  EEL+AR RA++RR   
Sbjct: 63  VCKRLRTQK-DTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSD 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++    + ++  A  V  Q  ++ LT  E+ ++ LL+  KN  L +E  L+H+
Sbjct: 122 ENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E E  ++DV+I  LR KL      K  IETV G GYV+R+
Sbjct: 182 WGYESEVETNVVDVYIRYLRNKLKRIDKQK-LIETVRGVGYVIRQ 225


>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
 gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Taylorella equigenitalis MCE9]
          Length = 233

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I + L      V      +    L      D I+LD  L    G  +
Sbjct: 5   ILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTSGLSL 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R+LR        P+ +L+  +S  DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++  +  V      + L   E++M+           ++   L+H++
Sbjct: 125 PQLTDDEISIAGLHLDPGSHRVTGNNTLLSLGPTEFRMLHFFMTHAERVFSRGQLLDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L   +G    IETV G GY  
Sbjct: 185 GDHVFLEERTVDVHIRRLRKALEP-SGHDQLIETVRGSGYRF 225


>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
           Paraca]
 gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 628

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++  ML S+ + V V + G+ G E  +   +D ++LD+ L  + G 
Sbjct: 1   MRILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR      P+ +L+  ++ +DKV+GL +GADDY+ KP +  EL ARIRA++RRS 
Sbjct: 61  SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S+     + ++     V   G  I +T KEY ++ELL   +  T + +  L+ L+ 
Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D P    +   I  LR+KL  A  G  +IETV+G GY L +N
Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224



 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 2/124 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +  +I+ +L+                +  +    D ++LD+ +  + G E
Sbjct: 497 RVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R        PV  ++  +  + + +  Q+GADDY++KPF   EL  RI   ++R+
Sbjct: 557 LCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616

Query: 120 RGHA 123
           +  A
Sbjct: 617 QNLA 620


>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
 gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
          Length = 234

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+ +ILDLGL  + G 
Sbjct: 16  MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 76  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++   + V  QG  I+L  KE+ ++  L  +    LT++     LY 
Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             ++ E   ++V I  LRKK          I TV G GY+
Sbjct: 196 WDEDVESNALEVHIHHLRKKF-----FPELIRTVRGVGYL 230


>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
 gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya zeae Ech1591]
 gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Dickeya dadantii 3937]
          Length = 229

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        + ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  + H + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
 gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
           13280]
          Length = 278

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   + + L++E F+V +   G D   L    EFD  +LD+ L D+ GFE
Sbjct: 46  RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR +R  + + PV +L+   S  DK+ GL  GADDY+ KPF   ELVAR +A +RR   
Sbjct: 106 LLRTIRTER-TYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164

Query: 122 H-----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +           A  +I    L +N DA+TV V    +  T  EY ++  L+  +   + 
Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224

Query: 171 KEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++D          + V I  LR+KL + A    +I+ +WG GY + +
Sbjct: 225 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 278


>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 232

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 113/230 (49%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +A      L+   F   +   GEDG+      EFD I+LDL L    GF+
Sbjct: 3   KILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ +++      DK++G   GADDYI KPF+  ELVAR+ A + R   
Sbjct: 63  LCKEIRSNK-EIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++V   L +    + V V    + L  KE++++  L+   N   +K 
Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L+ ++      +V  + V I ++R K+   +    +IETVWG GY  +
Sbjct: 182 ILLDRIWGMDSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGYRFK 231


>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/227 (40%), Positives = 136/227 (59%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +I+  L    + V V   GE+G+   + Y++D  I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   IS P+ IL+   S +DKV GL +GADDY+SKPF  EELVARI A++RRS 
Sbjct: 61  SLISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  ++     I+L+G EY++ E L L   +  +K   + H+YD
Sbjct: 121 GKASPVIQNGPFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +I+VFI +LRKKL         IET+ G+GY LR+ A D
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYQLIETLRGQGYRLRQLAPD 226


>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 239

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G +          D ++LD+ L D  G E
Sbjct: 7   RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R   +  PV  L+      DK+ GL  G DDY++KPF+ +ELVARIRA++RR+R 
Sbjct: 67  LCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTRR 126

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +   DL+++    +V   G  + L   EY+++  L +  N  L++E  L+
Sbjct: 127 EQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D        ++D ++  LR+KL  A  G   I T  G GY LR+
Sbjct: 187 AVWDTDYRGGATVVDQYVSYLRRKL--APYGPPLIHTQRGFGYALRD 231


>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 252

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+ AL+  +   L++E F V   + G++          D ++LD  L  + G E
Sbjct: 25  RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   P+ +L+      +K+RGL +GADDYI KPF+  EL+AR+RA++RRS
Sbjct: 85  ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRS 144

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      L+  GDLS++ +   V      +HL   E+++++ L  R     ++   L+ +
Sbjct: 145 RPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDGV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + +DV + +LRK LS     ++ I TV G GY   E+
Sbjct: 205 WGEAAEIDERTVDVHVGRLRKALS-IGEEQDPIRTVRGAGYSFDEH 249


>gi|118476709|ref|YP_893860.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196044305|ref|ZP_03111541.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|229183424|ref|ZP_04310649.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118415934|gb|ABK84353.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|196024944|gb|EDX63615.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|228600008|gb|EEK57603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 234

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  ++  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTADLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 231

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A+   I++ L+ E ++VY    GE+GIE+    +   ++LD+ L  I GF+
Sbjct: 4   KILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVMLPGIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR       + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR   
Sbjct: 64  VCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVIP 123

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    ++I +    ++  ++     G  + LT  E+ +++     K   +T+E  LN 
Sbjct: 124 EDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLNK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + KI+DV I +LR K+   +    YIETVWG GY   + 
Sbjct: 184 VWGEEFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGYRWNDE 230


>gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +A   +  L++  ++V V   G+ G++     E+D +ILDL L  + G
Sbjct: 1   MKHILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPIVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R  K + P+ ++S      DK+RGL  GADD+ISKPF+  ELVAR++A + R 
Sbjct: 61  FEICKQVRKVK-NIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARY 119

Query: 120 RG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A+  I    + ++  A+ V + G+ +  T KEY ++  L    N   +K
Sbjct: 120 DRLVSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSK 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++      ++  + V I KLR+K+ +      YIETVWG GY  
Sbjct: 180 TELFEKIWGLDSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGYRF 229


>gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
 gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str.
           Hartford]
          Length = 237

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 132/223 (59%), Positives = 171/223 (76%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IEL L SE        +G +G+ + K   +D +ILD+ L DI GF
Sbjct: 1   MRVLLIEDELEMANLIELTLASEGIVCDKASVGVEGLRIGKVCGYDLVILDIMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+ +   +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L   +   L+   F V     G   +   +      I+LD+ L D  GFE
Sbjct: 6   RLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDGFE 65

Query: 62  VLRALRVAKIST-----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V+R LR    S      PV  L+   + ED++ GL++G DDY++KPFN EELV RIRAI+
Sbjct: 66  VVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAIL 125

Query: 117 RRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+ G      +V G L ++ D+  V   G  + L+  E+ ++ +L       L+K   L
Sbjct: 126 RRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +  I+  +I  LR+K+         I TV G GYVLR
Sbjct: 186 ELVWQYDFGGDDSIVASYISYLRRKV--DLDEPKLIHTVRGTGYVLR 230


>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 229

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +++E +       G + +   +   +   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  IEVIKEVRKDS-QIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             H       ++  G L++N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
          Length = 232

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +Q+  V      G + V+     V V G  +HLT  E+ ++ LL+       + E     
Sbjct: 127 SQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFEK 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 187 IWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 231


>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 223

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  +EL LK E F   V   G  G+EL +  +FD I+LD+ L  + G E
Sbjct: 4   KILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++    + D+V GL +GADDY+ KPF  EEL+ARIR+I+RR + 
Sbjct: 64  VCRRIRKTS-NVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +S  ++  +L +++DA  V  + ++I LT KE+ +++LL   +N   T+E  L  ++ 
Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV+I  LR KL        YIETV G GYV+R
Sbjct: 183 FDTEVETNVVDVYIRHLRTKLQTE--HTPYIETVRGVGYVMR 222


>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 225

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+K +   ++  L+ E + V     G++ +   K    D I+LD+ +  + GF +
Sbjct: 5   ILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVMMPGMDGFAL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R   IS P+  LS   + +D+V+GL  G DDY+ KPF+ +EL ARI A +RR +  
Sbjct: 64  CELIR-KSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQRI 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++ + +  G+L+++L+   +      I  T +E++++  L+L      T+E     ++
Sbjct: 123 NSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E +   I   + K+R KL        YI TVWG GY   +
Sbjct: 183 GYDAEGDSSTITEHVKKIRAKLLKYDETP-YISTVWGIGYKWVK 225


>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
 gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
 gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
          Length = 236

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGFE 61
           IL+++DDK +A  +E+ L ++ + V     GE  ++  K + E   +ILD+ +  I G E
Sbjct: 7   ILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLKEHPEVRMLILDIMMPGIDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ ILS  +   DK+ G  +GADDY++KPF+  EL+AR+++ ++R   
Sbjct: 67  VCREIRKTS-NIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTT 125

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  +  ++  I   DL++N  A  V+  G  + LT  E+ ++ LL+  ++   + +
Sbjct: 126 IQLGEEQQPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTD 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +       + V I +LR+K+ + +     ++TVWG GY + 
Sbjct: 186 EIFEKVWNEKVYEVNNTVMVHIRRLREKIEDNSRSPKILKTVWGVGYKIE 235


>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 244

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 20  MKLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGW 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 80  EVLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 139

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 140 GSPTQTTVKISDLEVDLLKRRAVRAGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I TV G GY++
Sbjct: 200 DMNFDSDTNVIEVAVRRLRAKVDDDFEHK-LIHTVRGMGYMM 240


>gi|118471523|ref|YP_887235.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
 gi|118172810|gb|ABK73706.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
           smegmatis str. MC2 155]
          Length = 255

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D++AL + +++ L+ E + + V       +E  +    D ++LD+ L D  G 
Sbjct: 30  IRVLLVDDERALTNLVQMALQYEGWVIDVAHDAAQAVEKYRANLPDLLVLDIMLPDTDGL 89

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R     TP   L+   S+ D+V GL +G DDY++KPF+ EELVAR+R ++RR+ 
Sbjct: 90  GVLEQIRSFGTYTPTLFLTARDSVADRVEGLTAGGDDYMTKPFSLEELVARLRGLLRRTA 149

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDL+++  + TV      I LT  E+Q++ +L       L+++  L  
Sbjct: 150 YLTPAADETLRVGDLTLDASSHTVTRGDTPIALTSTEFQLLRVLMRHPRKALSRDDILRQ 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+D+++  LRKK+    G +  I TV G GY+LR 
Sbjct: 210 VWEYDFGGRTSIVDLYVSYLRKKI--DTGREPMIHTVRGVGYMLRP 253


>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 234

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ++   +   L+ E+F V         + L + +    I+LD+ +    GFE+
Sbjct: 7   ILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPGQNGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +  S P+  LS      DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 67  CRTIR-SSSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSAQ 125

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L +NL  + V V G  I LT +E+++++L   R     + +  +
Sbjct: 126 QEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHLI 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + L++G    +   + V + +LR K+ +      Y+  VWG GY   
Sbjct: 186 DKLWEG--VGDKHTVRVHLSRLRDKIESDPAQPRYLINVWGVGYRFE 230


>gi|299542039|ref|ZP_07052358.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
 gi|298725462|gb|EFI66107.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           fusiformis ZC1]
          Length = 240

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+  LA+ +++ L+ E +  +Y      D     +    D I+LD+ L D  G++
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYKQIYTASTIRDAWTSFQQTTPDIILLDVMLPDGEGYD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV  +S  +   DK+ GL  G DDYI+KPF+ +E+  R++A +RR+  
Sbjct: 66  LCRRIREVS-HVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRAGY 124

Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q  I          G   +N D   V   G  + LT KE  ++       N  L+KE 
Sbjct: 125 QTQDTITNIVEKTLQIGPFQLNADETEVHKNGVLLELTAKEIGLMACFMNNPNRILSKET 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++          + V I +LR+K+   A    YI TV G GY   
Sbjct: 185 LFERVWGEDFFGSDNTVMVHIRRLREKIEEDASNPLYITTVKGLGYKFV 233


>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
 gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD1]
 gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2]
 gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia multivorans CGD2M]
          Length = 235

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  +  G  I   L   E++++           ++   L
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 187 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 235


>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
 gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
 gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
 gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
 gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
 gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
 gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
 gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
 gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
 gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 231

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 227

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   +    G +  ++      D ++LD+ +    GF V
Sbjct: 4   VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    + P+  L+   + EDKV+GL  G DDYI KPF  +ELVARI A++RRS  +
Sbjct: 64  CQSIRAMS-NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  ++ G + ++  A+ V V G  I LT KE++++ L         ++E  L  +
Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D       + +D  I  LR KL   A    +I+TVWG GY    
Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKDAAS--HIQTVWGVGYRFDP 225


>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
           16992]
          Length = 243

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGKN----YIETVWGRGYVLREN 224
                +  I++ +I  LRKK     + +  G K      IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMIRAP 241


>gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
          Length = 237

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E +LK E FN VY     ++G+      + + +ILD+ L D  G+
Sbjct: 4   KILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R +K + P+  LS  +   DK+ G   G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 64  EICKDIR-SKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + +I  G   +N     +   G  I LT KE +++ LL+  +N  ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIELTAKELKILSLLAHNQNQIISK 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   + ++          I V I KLR+K+   +    YI TV G GY L
Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKL 232


>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
 gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
          Length = 229

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++++A  IEL L++EN++++    G+D +E  +   +D  ILD+ + D+ GF +
Sbjct: 5   ILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLDGFSL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      PV +L+  S+  DK+ GL  GADDY++KPFN  EL AR++  +RR   +
Sbjct: 65  LKKIR-KHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYLRY 123

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q+            L +N       +    ++LT  E+ ++  L  ++   +T E    
Sbjct: 124 NQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEELFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +       +   + +LR+K+   A    +I+TVWG GY + 
Sbjct: 184 AVWQEKYLDNNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTIE 229


>gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 226

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 127/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A+ I   L    F V V   G DG    +  E+D IILD+ L  + G+
Sbjct: 1   MRLLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R    +TPV  L+   +IED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  QLLQLIRQRG-ATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  + V   G RI LT KE+ ++ LL+ R+   L++ +  + +++
Sbjct: 120 LREAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +  +++V + +LR K+ +       I TV G GY L   A D+ 
Sbjct: 180 LNFDSDTNMVEVAVRRLRSKV-DDPYMPKLIHTVRGVGYQLE--APDDA 225


>gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 229

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +   +++ L+ E + V+    GE+GI++ +  +   ++LD+ L  + GF 
Sbjct: 4   KILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA---IVRR 118
           V + LR    +  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI++    +  
Sbjct: 64  VCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + ++ I+     ++   +        I LT  EYQ++++        + ++  L  +
Sbjct: 124 EEENDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKIV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        YIETVWG GY  +
Sbjct: 184 WGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYRWQ 227


>gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42]
 gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42]
 gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42]
          Length = 267

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D+K +   I+ +L  E  + V       DG+        D +ILD+ L D  G+
Sbjct: 39  KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 99  DICKQIRDIS-HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  G   +N     +      I LT KE  ++       N  ++KE    
Sbjct: 158 YLQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQ 217

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          + V I +LR+K+ N     +++ TV G GY   
Sbjct: 218 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263


>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 236

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 130/232 (56%), Gaps = 12/232 (5%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL++ED+K ++  ++  L+ E++++     G++G+E     E D I+LD+ L  
Sbjct: 1   MKDKVHILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPS 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GFE+ + +R  K +TP+ +L+      DKV GL+ GADDYI+KPF+  E+VAR++A V
Sbjct: 61  MDGFEICKQIRKTK-NTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANV 119

Query: 117 RR-----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR     +   A  L+   D+ +++    V V+G  I +T +E+++++ L+  ++   ++
Sbjct: 120 RRVEMIENSAVASQLLKFKDIEIDVSKYIVRVRGEEIKITFREFELLKFLAQHRDQVYSR 179

Query: 172 EMFLNHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L  +++         + +DV + +LR+K+        ++ T  G GY  
Sbjct: 180 EQLLTIVWEYEYIGVDSERTVDVTVRRLREKIEIDPSNPEFVITKRGVGYYF 231


>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 233

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   LK E ++  V   GE+ + + K    D ++LDL L  I GFE
Sbjct: 5   KILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDGFE 64

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R   ++   P+ +L+      D V GL+ GA+DYISKPF+  ELVARIR I+RR 
Sbjct: 65  VTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRRR 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ ++ G LS+++    V V  + + LT  E+Q++  L  +K    T+   +
Sbjct: 125 TRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++        + +DV I  LRKKL   A   ++IETV G GY  RE A
Sbjct: 185 DAVHGENYAVTERSVDVTIAGLRKKLGPCA---DFIETVRGVGYRFREEA 231


>gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
 gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator,
           winged helix family [Comamonas testosteroni KF-1]
          Length = 227

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 126/228 (55%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    +   +   G DG+ +    E+  +ILD+ L  + G+
Sbjct: 1   MRVLIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 PANEGTTLTVADLELDLLRRRVSRNGKRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRAKI-DEGHSIKLIQTVRGMGYVLDVPEEE 227


>gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  266 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K +A  +   L++E F V V + G  G E+   Y +D +ILDL L  + G 
Sbjct: 1   MRLLLVEDEKKVAEFVARGLRAERFAVDVCNDGLSGYEMASTYNYDLMILDLMLPTLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR      PV +L+    + +K+   ++GADDY++KPF   EL+ R++A++RR  
Sbjct: 61  EILKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S++  GDL ++   + V   G +I LT KEY ++E L+      L++ M + H++D
Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E    I+DV++  LR K+ ++      I TV G GY
Sbjct: 181 ESFEGLTNIVDVYVRHLRSKV-DSGYPCKLIRTVRGVGY 218


>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
 gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
           E681]
          Length = 226

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED+  +   I    K  N+ VY    G+D +      + D IILD+ + ++ G+E
Sbjct: 4   RVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S  +DK+ G + GADDY++KPF+ + L+AR  A+++R  G
Sbjct: 64  VCRQVRSRSG-VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEG 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           H Q    ++  G   +N  A  +EV    + LT KEY+++ LL   K   ++++  LN +
Sbjct: 123 HVQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + +++D  I KLR KL        +I TV+G GY   E 
Sbjct: 183 WGIDFEGDTRVVDTHIKKLRSKLG---RESRHIRTVFGTGYRFEEE 225


>gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 228

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A  +   L +  F V     G+DG+ +  F E D I++D+ L  + G 
Sbjct: 1   MRLLLVEDDVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    +TPV +LS    ++D+VRGL++GADDY++KPF   EL+ARI+A++RR+ 
Sbjct: 61  SLIKTLRARGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAG 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + +  G+L ++L  + V   G  + L   E+ ++E L   +   ++K M + H++
Sbjct: 121 GVVDPTTLSYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P   +++  +C+LR K+ +       I TV G GYVL
Sbjct: 181 NYNFDPMTNVVEARVCRLRDKI-DKGFHPKLIHTVRGAGYVL 221


>gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Magnetospirillum gryphiswaldense MSR-1]
          Length = 225

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+  +  +   LK     V     G DG+ L     +D++I+D  L  + G 
Sbjct: 1   MRILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRMLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A  +TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI A+ RR+ 
Sbjct: 61  TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+         I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFDQA-LIHTVRGAGYTLR 222


>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 17/239 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   +NV   + GE+ +E       D ++LD+ L  + GF V
Sbjct: 12  ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFAV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + SI ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 72  CRRLRAESC-VPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGSG 130

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 131 SATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVPR 190

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225
              L  L+    R   +++++DV++ +LR KL         I TV G GY    + E A
Sbjct: 191 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGYSSQRMGEPA 249


>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 242

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 118/235 (50%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  +   +   L    FNV   D GE+ +       FD I+LD+ L  I G E
Sbjct: 5   HILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGISGLE 64

Query: 62  VLRALRVAKIST----PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V +++R  +       P+ +++     ED + GL+ GADDYI+KPF+ + LVAR++A+VR
Sbjct: 65  VCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVVR 124

Query: 118 RSRGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R +          I   +L ++     V  QG  I LT  E+ ++ LL+ +     T++ 
Sbjct: 125 RGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++ +         + IDV I  LRKKL  A      IETV G GY  ++  +++
Sbjct: 185 IIDAVRGYDFLVTPRAIDVQIFGLRKKLGAAGQS---IETVRGIGYKFKDPQEED 236


>gi|317132867|ref|YP_004092181.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470846|gb|ADU27450.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+A      L  E F V ++  G  G+E      FD I+LDL L  I GF 
Sbjct: 3   KILIIEDDTAIAAIERDYLLVEQFEVVISQDGRSGMEKALQGSFDLILLDLMLPGIDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V R LR   +  P+ +++      DK+RGL  GADDYI KPF+   LVAR++A       
Sbjct: 63  VCRRLRE-SLDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +R++   A   I  G + +N D   V V    I L  KEY+++  ++   +  L +E   
Sbjct: 122 LRKTDRTAPIQIAIGSIRINTDTHRVYVNDTEIELKNKEYELLLFMAQNADVVLNRETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I +LR K+    G   YI+TV G GY  +
Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDKIEEDPGNPRYIQTVRGAGYRFK 228


>gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILLI+D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   P+  L+  +S  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPILRQ-KTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 H--AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  I     G   ++  +  + V G+ +  + + +Q++       N   +KE    
Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK L   +E  L  + F V      +    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENQIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRQSK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++LI  G  ++NL  + +    + + LT  E+ +++ L       L+++  
Sbjct: 127 EVPGAPSAEENLIKFGKFTLNLATREMSEGDNTVSLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVFVPDGE 238


>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 226

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+      +   L    + V   + G  G    +  ++D +ILD+ L    G+
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  + STPV  L+    + D+VRGL+ GADDY++KPF+  ELVAR+R+I+RR +
Sbjct: 61  TLLQNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L  +    QG  I LT KE+ ++ LL  ++   L +    + ++D
Sbjct: 120 PRESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKV-DDAYEPKLIHTVRGMGYVLE 220


>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 246

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 121/234 (51%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     P+ +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L     ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPTNEQ 236


>gi|257870403|ref|ZP_05650056.1| response regulator [Enterococcus gallinarum EG2]
 gi|257804567|gb|EEV33389.1| response regulator [Enterococcus gallinarum EG2]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 14/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E ++      G++G+E       ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWDATFKYDGKEGLEAFAETPEKWDMITLDLNLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMIVAREIRKISNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 120

Query: 119 SRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           S    ++          IVT    +N   +   + G  I  LT KE+ ++  L+ +    
Sbjct: 121 SEIAEKASSETSDTTFDIVTDHFKMNTKTREAYLNGKLIDGLTPKEFDLLYTLAKKPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   +
Sbjct: 181 FSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDD 233


>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
           proteobacterium HTCC2143]
          Length = 232

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +   +   ++ +N+ V V   G +G+     Y +D  I+DLGL +I G 
Sbjct: 1   MRILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR      P+ IL+  S  +DKV GL++GADDY+ KPF  EE+ ARI A++RRS 
Sbjct: 61  TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  G L++N  +K   +    + LT  EY  +E L+      ++K     HLY 
Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  +I+VFI +LRKK+         I TV G+GY  
Sbjct: 181 QDFERDSNVIEVFIGRLRKKIDPD-NQLKAIVTVRGQGYRF 220


>gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
 gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
           43969]
          Length = 241

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 16  VLIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLMLPGSDGITI 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 76  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQQ 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 135 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL +  G K +I  V+G GY   
Sbjct: 195 RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 234


>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL   I+  L  E + V     G   +       FD  ILD+GL  + GF
Sbjct: 1   MRLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR +  + PV IL+   + ED++ GL SGADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    + ++   + V      + LT KEYQ++  L       +T+E  +  LY 
Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   ++V I  LRKK          I T+ G GY++ E +
Sbjct: 181 WNEEAESNTLEVHIHHLRKKF-----SSTLIRTIRGGGYLVEERS 220


>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +++E +       G++ +   +   +   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  IEVVKEVRKDS-QIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             H       ++  G L++N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EEHVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
 gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
          Length = 235

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 67  ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G  I   L   E++++           ++   L
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAASAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 187 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 235


>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
 gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oligotropha carboxidovorans OM5]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ALA  +   L +E ++V     G++     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S+++ GD+ ++ + + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYALDD 227


>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
 gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum A3 str. Loch Maree]
          Length = 226

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ ++  IE+ L  E + V V   G + +E  +  E+  I+LD+ +  + G E
Sbjct: 5   KILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S + DKV GL  GA+DY++KPF  EEL+ARIR   R    
Sbjct: 65  VCRRIRQFSC-VPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKLV 123

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +   D+ ++     V   G  I LT KEY +++ L + KN  LT+E  +  ++ 
Sbjct: 124 KSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +  ++DVFI  LR K+ +    +  I T+ G GYV+++N
Sbjct: 184 YDYVGDTNVVDVFIRYLRSKI-DNGSKEKLITTIRGVGYVIKDN 226


>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
           sticklandii DSM 519]
 gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
           sticklandii]
          Length = 230

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ ++  +   L+ E ++  + + G +G+ L +    D +I D+ +  I G E
Sbjct: 4   KILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPTIDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R+     PV +L+      D+++G ++GADDY++KPF+ +ELV R+  +++R+  
Sbjct: 64  VLREIRLIS-DVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTYK 122

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   ++ G+L ++L+ + +      I +T KE+Q+I          L++E  +   +
Sbjct: 123 TIENKQVLIEGELKLDLNKQKLYKNEVEIDITSKEFQIIYAFFKNPRQILSREQLIELAF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               E   + IDV I K+R K+        Y++T +G GY+   + +D
Sbjct: 183 SNDFEGFDRTIDVHIKKIRHKIEEDTKNPKYLKTKYGAGYIFGGSDED 230


>gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +A  IE+ LK++ + V    LG++ ++  +   FD  +LD+ L DI GF+
Sbjct: 4   KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R      PV +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR   
Sbjct: 64  IVQKIRENHF-FPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRRFQK 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S   +   I    L +N    T  + G  I LT  E+ ++  L+ RK   +  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++  +       +   I +LR+KL        +I+TVWG GY + 
Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233


>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 248

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 22  RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 82  VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  +S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L+
Sbjct: 142 AVAAGRGESTLTVGDLVLDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +  +++++I  LRKK+   AG    I T  G GY+++ 
Sbjct: 202 RVWNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTRRGAGYLIKP 246


>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
 gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 652

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 1/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  L   +   L+ + + V     G  G +  +   +D I++D+GL    G 
Sbjct: 1   MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +++   +  D++ GL +GADDY++KP +  EL AR+RA++RR  
Sbjct: 61  TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L ++  +  V      ++LT KEY ++EL         ++   + HL+ 
Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             D P  + +   +  LR+KL  AAG  ++IE ++G GY L     ++  
Sbjct: 181 FDDPPLEESVKAHVKGLRQKLK-AAGAVDWIENIYGIGYRLNPPDSEQKS 229



 Score =   99 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++DD      I L+L+    ++   +   +   +      D +ILD+ +    G E+
Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++LR      S P+  L+     E   +    GADD+++KP    EL+ RI   + R+R
Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLERTR 501


>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 269

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G+  ++  + +  DA++LD+ L D+ G  
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 164 ADRRSDSMLVVGDLTLDEDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 224 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 266


>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 247

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 18  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 78  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 137

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 138 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 197

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 198 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 240


>gi|313884593|ref|ZP_07818354.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620377|gb|EFR31805.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 13/239 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +E+  ++EN+     + G +G E  K     +D +ILDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMEMFFENENYTATFKNDGLEGFEAYKAEPKHWDIVILDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R     TP+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMQICRQIRKISAETPIIMLTARDSESDQVIGLEMGADDYVTKPFSPMTLLARMKALHRR 120

Query: 119 SR--------GHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTL 169
           ++          A+  + T  L +N   +        I  LT KE+ ++   +       
Sbjct: 121 AQIVPSDQHEADAEFDVTTDHLKINTATREARYNDQVIENLTPKEFDLLVTFAKSPKRVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +++  L  L++     + + +D  I KLR+K+     G   I+TVWG GY  +E    E
Sbjct: 181 SRDDLLTSLWEDPFYGDERTVDAHIKKLRQKIEVV--GPQLIQTVWGVGYKYQEPGDQE 237


>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+      +   L  + ++V     G   +++ K    D I+LDL L ++ G +V
Sbjct: 5   VLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLMLPEMSGEDV 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRAI+RR+   
Sbjct: 63  CRKIRQ-HSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAE 121

Query: 123 A----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I  G ++++  A  V V    I +  +EY+++E L       +T+   L+ +
Sbjct: 122 PATEEPQPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + K +DV + ++R K+       + + TV G GY +   +
Sbjct: 182 WGIGYVGDSKTLDVHVKRIRSKIEKDPVNPSLLVTVRGVGYKIVTPS 228


>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+SE + V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 APERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNIGREQDPIRTVRGAGYALDD 227


>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+ED++ L   I   L+ E   V V   GE+G  + K  + D +ILD  L  + G E
Sbjct: 3   HILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R   I  PV +L+      +KV GL+ GADDY++KPF+  EL AR+RA++RR+  
Sbjct: 63  VCRKIRETSI-VPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAF 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++    + ++ + + V+++   + LT KEY+++EL         ++  
Sbjct: 122 GRERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAY 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++ +++       + +D  I +LRKK          IETVWG GY        E 
Sbjct: 182 LMDRIWEADYLENDRTVDTQISRLRKKFGLYGKA---IETVWGTGYKFNPGKGSEA 234


>gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 254

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254


>gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
 gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  S P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSTEESVVAFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ +        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
 gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
          Length = 238

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 14/235 (5%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    I++++D+ A+A  +++ LK+E + V+        +E  +    D  ILD+ L D
Sbjct: 5   MKMSAEIMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVMLPD 64

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF + + +R + +  P+ +L+      DK+ GL  GADDYI+KPFN  ELVAR++  +
Sbjct: 65  MDGFTLCQKIRESHL-FPILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQL 123

Query: 117 RRSRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           RR   +  S               L ++       +    + LT  E+ ++  L  R+  
Sbjct: 124 RRYTRYNPSSGCGEEVPQEYDIRGLQISKANHKCFLFEEELSLTPLEFSILWYLCSRQGQ 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ E      +  +       +   I +LR+K+   +    +I+TVWG GY + 
Sbjct: 184 VVSSEELFEAAWGEKFMDSNNTVMSHIARLREKMHENSRKPKFIKTVWGVGYTIE 238


>gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 219

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 125/220 (56%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK+  F  + T  G + +EL     FD IILD+GL DI GFEV
Sbjct: 4   ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGLPDIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR   ++ PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R     
Sbjct: 64  LQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEAAG 123

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A  + +   D+ ++L  +T+ ++G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 124 ADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   +++V++  LR KL         +ETV G GY L
Sbjct: 184 DFDPGSNVVEVYVSYLRNKLGRD-----RVETVRGMGYRL 218


>gi|228984288|ref|ZP_04144469.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775405|gb|EEM23790.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +R+   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRKHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V GH +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHASSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
 gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
          Length = 223

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   ++L L    F+V     G+ G++      +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++ R A    PV IL+   ++++++ GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  EVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH   +I    +  + + + V ++   + LT +EY ++EL    K+  LT+      LY 
Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR+KL     GK +I TV G GY L +N +
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDE 221


>gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILLI+D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 H--AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  I     G   ++  +  + V G+ +  + + +Q++       N   +KE    
Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 238

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++    +   L+ E + V     G   IEL + +  D ++LDL L  +PG E
Sbjct: 3   RILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR+     PV +L+      DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRRLRLTS-DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREA 121

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                             L+V+G + +++D  TV+V+G  +    KE+ ++E+L      
Sbjct: 122 AVVAGAGAPAPVLDEEDGLLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGR 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LT+   ++ ++      + K +DV + ++R K+         + TV G GY L E
Sbjct: 182 VLTRGQLIDRIWGSDYVGDTKTLDVHVKRVRAKIEADPANPTLLLTVRGLGYKLEE 237


>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
 gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
           [Brevundimonas diminuta ATCC 11568]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  ++  L+ E ++V V   GE+G+        D I+LD  L  + G EV
Sbjct: 5   ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R      + P+ +L+      D+VRGL +GADDY++KPF+  EL ARIRA++RR R
Sbjct: 65  CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   +   D+ ++  A  V   G  +HL   E+++++          ++E  L+ ++
Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L N  G  N I TV   GY L
Sbjct: 185 GSDVYVEARTVDVHVGRLRKAL-NVEGTVNPIRTVRSAGYSL 225


>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G E
Sbjct: 17  RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R 
Sbjct: 77  VCRRVRAFS-ECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRT 135

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ +
Sbjct: 136 TVSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D     + +++DV I  LR+KL        YI+TV G GY + E 
Sbjct: 196 WDPAWVGDERLVDVHIKNLRRKLDANPA--RYIDTVRGVGYRMAEQ 239


>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
           monocytogenes L99]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 11  ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 71  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 130

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 131 SQAEPVSQDKVIIGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 191 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 236


>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
 gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia tasmaniensis Et1/99]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  +++       +  + L      D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L+++  +  V      + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLTLDPSSHRVMSATQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VSGHDRMVQTVRGTGYRF 225


>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
           [Comamonas testosteroni KF-1]
 gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 110/232 (47%), Gaps = 10/232 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    +L++ED+ A+A  I + L+   F     + G            D I+LD  L  
Sbjct: 1   MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLPG 60

Query: 57  IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G  + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA
Sbjct: 61  ASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR      Q  +  G+L ++  A  V  QG  + +   E++++  L        ++  
Sbjct: 121 VLRRRAPEQVQDKVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV + +LR+ L  A      IETV G GY     A
Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLRESLGVAG---VLIETVRGAGYRFSAQA 229


>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I+     E   V   + G + IE CK  +FD II+D+ + ++ GF 
Sbjct: 3   KLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R     TPV +LS      D++ G + G DDY+ KPF+ +EL+ R+ AI++R + 
Sbjct: 63  ACREIRKF-TDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKV 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++ ++    L V+ DA+ V + G  + +T KEY++   +   +   L++E  +++
Sbjct: 122 KEEAASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +D  I  LRK L   A     I T+ G GY   E
Sbjct: 182 VWGYDYYGDDRTLDTHIKLLRKSLGEYA---RLIVTLRGVGYRFEE 224


>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
 gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANELALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 235

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I + L+   F    ++ GE           D I+LD  L    G  
Sbjct: 6   RVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPGQSGLM 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L ++     V  QG  + +   E++++           ++   L+ +
Sbjct: 126 APEQVSDSVTIGELVLDAATYRVTFQGQPLKVGPTEFKLLHFFMKHSERVHSRSQLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +DV + +LR+ L  A      +ETV G GY L    +
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGAAGA---MVETVRGAGYRLTAQPQ 230


>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
 gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L+ +NF+V     GE+ +++  +  +   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+ +L+      D++ G   G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVCREIR-KNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   ++  G + ++  A    V G  + L+ KE++++      +   L++E  LN ++
Sbjct: 124 QDAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     + + ID  + KLR K+ +      YI TVWG GY    +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIRTVWGMGYKFEVD 225


>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 228

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  L   +   L +E   V     G DG      + +D +ILD+ L  + GF+
Sbjct: 3   KILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEH-YDLVILDVMLPGMNGFD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R +    PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI RR+  
Sbjct: 62  VLRQVRQSS-EVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    + +  GDLS++   + V      I LT  E+ ++ +L       +++E  ++ + 
Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                P  + IDV I  +RKKL     G+  I+T+ G GY       D
Sbjct: 181 GRHLSPYDRSIDVHISSVRKKLGQTPSGRERIKTIRGVGYQYVATGCD 228


>gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
 gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
           35236]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLMLPGSDGITI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 74  CREIRRFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQA 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    +  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 REQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL +  G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDGDKPFIRAVYGMGYRWE 232


>gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +LL++D+ A+   +  +L+ E F ++      E+ ++  +   +D +ILD+ L    GF+
Sbjct: 6   VLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  SS  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G   V+  A  ++V G  +  + + +Q++       N   +KE   
Sbjct: 125 QTTQPMKETHFLSFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPQYIKTVRGLGYKF 231


>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 240

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD+ LA      L+S   +V V   GE+ I   +  + D ++LDL L    G  V
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLMLPGADGLTV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A  + P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR    
Sbjct: 71  CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R ++ + +  G L ++  A+ V + G  + LT  EY ++ LL+    T L++E     
Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L   + + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 190 LRGIQYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLFVKE 236


>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL+  +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 223

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGATLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 235

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  + + L+   F     + GE           D I+LD  L    G +
Sbjct: 6   RVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPGQSGLQ 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L ++     V  QG ++ +   E++++  L        ++   L+ +
Sbjct: 126 APEQVSDSVSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +DV + +LR+ L         +ETV G GY L    +
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGVGGA---MVETVRGAGYRLTAQPQ 230


>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L          +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+   + ++   + V +    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF]
 gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE]
 gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU]
 gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056]
 gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058]
 gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059]
 gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
 gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE]
 gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii]
 gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC
           17978]
 gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
           AB307-0294]
 gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1]
 gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2]
 gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013150]
 gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6013113]
 gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
           6014059]
          Length = 254

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254


>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
 gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
           [Rahnella sp. Y9602]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  I        + I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+   ++   PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIDMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHSERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDRMIQTVRGTGYRF 225


>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
 gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Edwardsiella tarda ATCC 23685]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D I+LD  L    G +
Sbjct: 12  RILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGSGIQ 71

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+        PV +L+     ED+VRGL+ GADDYI KPF+ +ELVARI+A++RR 
Sbjct: 72  LIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMRRI 131

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A +  I    LS++  +  V      + +   E++++           ++E  LNH+
Sbjct: 132 SPMALEETITLQGLSLDPVSHRVMADEAPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  ++G    ++TV G GY  
Sbjct: 192 WGTNVYVEDRTVDVHIRRLRKALE-SSGHDRMVQTVRGTGYRF 233


>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V   G     ++ L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
           CreC), regulation of Pi uptake (OmpR family) [NC10
           bacterium 'Dutch sediment']
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+++D+K +   +   L+ E F V     G   +EL K      ++LDL L  + G 
Sbjct: 1   MKVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGL 60

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V R LR    +   P+ +L+  +   DKV GL+ G DDY++KPF  +ELVAR++A++RR
Sbjct: 61  DVCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S       ++  G L ++LD  TV ++   + LT KE+ +++ L L K   LT+E  L+ 
Sbjct: 121 SEEVQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDR 180

Query: 178 LYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      E E + +DV + +LR+KL   A     I TV   GY   +++
Sbjct: 181 VWGYERASEIESRTVDVHVRRLREKLGPEAA---RIVTVKSVGYRFNQDS 227


>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
 gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   I + L++E + +       + +++ +    D IILD+ L  + G E
Sbjct: 6   KILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIMLPKMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  LS      DK++GL SGA+DYI+KPFN  EL+ARI++ +RR R 
Sbjct: 66  ACLKIREQ-YQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +    +       G L V+ + + V ++   + LT KE+ ++ LL   K    + E    
Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++         + V I K+R+K+        Y++TVWG GY 
Sbjct: 185 MVWEDLFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228


>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   + VY    GE+ IE       D I+LD+ L  + GF 
Sbjct: 5   RILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKMDGFA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R   +  P+  L+ + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR   
Sbjct: 65  VCRRIRAESV-VPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        + ++  G L V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 124 SISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234


>gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 224

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILVVEDDQTLNRQLVEALNGAGYVVDKAMDGEEGHFLGDTEPYDAVVLDVGLPLMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    + PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDGRTMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I  G L ++  A  V + G  + LT  EY++++ L   ++  +++   + HLYD
Sbjct: 121 GHASSEIHCGPLRLDTRAARVTLDGTALKLTSHEYRLLDYLMHHQDQIVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKKL    GG   IETV G+GY + +  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL----GGAELIETVRGQGYRMHDGG 221


>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 241

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L+ E + V     G  G+      E   +ILD+ L ++ GF 
Sbjct: 10  RILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMSGFA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR  K S PV +L+   S +DKV+GL++GADDY++KPF+  E +AR+ +++RR   
Sbjct: 70  VLSELRKTK-SIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +SLI  G L +N   ++V VQ   I LT KE+ ++  L+       TK+  
Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++      +   +  +I KLR+K+        YI+T+WG GY   + A
Sbjct: 189 YTQIWQEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNKGA 239


>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 243

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 125/233 (53%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I+TPV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK-----LSNAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK     + +  G K      IET  G GY++R  
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMIRAP 241


>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
 gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
           [Desulfarculus baarsii DSM 2075]
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   +E  L+   FNV     G DG+ L K  +   ++LDL L  + G EV
Sbjct: 6   ILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLPGLEGQEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   PV +L+ ++S  D++ G + GADDY++KPF+  ELV R+RAI+RR  
Sbjct: 66  CRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRRQT 125

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  +    +    L ++ D   V +    + LT  E++++  L        T++  L H+
Sbjct: 126 GPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLEHV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +   + +D  + +LRKK+   +     IET+ G GY  +E
Sbjct: 186 WGYEYDGYARTVDTHVRRLRKKIGPLSDD---IETIRGIGYRYKE 227


>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 233

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 127 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
 gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
          Length = 219

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED+K ++  ++L L    +       GE G++     E++ I+LDL L  I 
Sbjct: 1   MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R LR  K  TPV +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR
Sbjct: 61  GIEVCRRLREIK-QTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 119

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G++ ++     V  + + ++LT  E+ ++ LL       +++   L+ 
Sbjct: 120 MNFQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   ++    +++V+I  LR K+    G K  IETV G GY L
Sbjct: 180 VWGYDEDVSTNVVEVYIRYLRNKI---PGIK--IETVRGVGYRL 218


>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
 gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
          Length = 226

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   ++  L  E + V     G + +E+  +  +   IILD+ +  + G
Sbjct: 4   IKILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPRMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++  R +R +    P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RRS
Sbjct: 64  WQTCREIRQSS-QVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRS 122

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  G + ++  A  V++    I L+ KE++++      +   L++E  LN++
Sbjct: 123 HAIGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     + + ID  + KLR KL +     NYI+T+WG GY     A
Sbjct: 183 WNYDYFGDARTIDTHVKKLRSKLGDKG---NYIKTIWGMGYKFEVEA 226


>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  +  S+   L+   F V+     EDG+ L K    D ++LD+ L  + G + 
Sbjct: 5   ILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMDGLDA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR  R   +  PV  ++      D+V GL+ GADDYI+KPF+   L+ARI+A++RR  G 
Sbjct: 65  LRRFREE-VGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSGG 123

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +        ++ G+L ++  A TV   G  + L+ +E+ ++  L+L     +  +  L 
Sbjct: 124 EERKPAEPQPLLIGELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELLA 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      E +++ V I  LR+KL +     +YI TV G GY L 
Sbjct: 184 RVWGAEFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKLV 229


>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
 gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
           87.22]
          Length = 251

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   + + L+   + V     G   ++    ++ D I+LD+ L D+ GFE
Sbjct: 28  RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV  L+G+  ++D+VRGL  G DD+++KPF  +E+ AR+RA++RRS G
Sbjct: 88  VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G + ++ DA  V      + LT  E+ ++  L       L++      
Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++ RDE    ++D +I  LR+KL     G++ I TV G GY L
Sbjct: 208 VWNHRDEGSG-VVDTYIYYLRRKLGEP--GQSLIRTVRGVGYQL 248


>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 248

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   +   + +  DA++LD+ L D+ G  
Sbjct: 22  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 82  VLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGS 141

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G A+S +  GDL ++ D+  V   G  IH+T  E++++  L       L+K   L+
Sbjct: 142 AVAAGRAESTLTVGDLVLDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQILD 201

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++     +  +++++I  LRKK+   AG    I T  G GY+++ 
Sbjct: 202 RVWNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTRRGAGYLIKP 246


>gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 231

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY+SKPF+ EE++ARIRA++RR+ 
Sbjct: 61  AVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G  + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++R+KL         I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRRKLDVD-----IIQTVRGLGYLL 216


>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 238

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I + L+   F  +  + GE           + I+LD  L    G  
Sbjct: 13  RVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWMLPGQSGLS 72

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 73  LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 132

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L ++     V  QG  + +   E++++  L        ++   L+ +
Sbjct: 133 APEQLSDSVHIGELRLDAATYRVTFQGQPLKVGPTEFKLLHFLMRHTERVHSRSQLLDKV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +DV + +LR+ L  A+     +ETV G GY L     
Sbjct: 193 WGDHVYIEERTVDVHVKRLREALGAAS---VMVETVRGAGYRLTAQVP 237


>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 115/234 (49%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K LA  I   L +  F       G   + L    E+D ++LD+ +  + GF+
Sbjct: 7   RILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  +   P+  L+  +   D++ G + G DDY++KPF+ +EL ARIRA++RRS  
Sbjct: 67  VARKVRADRG-LPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRSAS 125

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A + I+ G L +N  +  V +    + LT  ++ +++ L    +   T+   L 
Sbjct: 126 GEKEPEADTEIIRGALRLNPVSMKVRLGNDPVALTPGQFAILKQLVSYPDRVFTRNELLQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDET 229
            +         + IDV I  +RK + +      YIET+ G GY       +D+ 
Sbjct: 186 EVSGDYTGVYERTIDVHIKNIRKAIEDDPSHPRYIETIHGIGYRFTVPPGEDDA 239


>gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 129/222 (58%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ +++  +  L+ E + VY +  G   +EL    EF  IILDL L DI G E
Sbjct: 3   KVLIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDIQGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K    + +++  S++ED++ GL +GAD+Y+ KPF+  ELVAR+ ++ RR   
Sbjct: 63  ICKIIR-DKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGA 121

Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  S++    G++ +  D++ ++V+G  I LT  E+ ++ +L++ K   LT+E  ++ ++
Sbjct: 122 NNISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVF 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +DV I  +RKK+   +    YI TV   GY  
Sbjct: 182 GMDFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGYKF 223


>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
           [Photorhabdus asymbiotica]
          Length = 229

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  +    G +
Sbjct: 4   RILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGSGLQ 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVAR++A++RR 
Sbjct: 64  IIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    ++LI    L +++ +  V  Q   + +   E++++           ++E  LN++
Sbjct: 124 SPMMIENLIEMDGLILDITSHRVTSQDQVLDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGANVYVEDRTVDVHIRRLRKVLE-VGGHDKMVQTVRGTGYRF 225


>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 225

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  +   ++  L  E F V     GE G+   +    D +ILD+ L  + G E
Sbjct: 4   RILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV +L+     +++VRGL+ GADDY++KPF+ + L AR+RA +RR   
Sbjct: 64  VLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRET 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +++  G+L+++    +V   G  I LT +E+++++    +     +K + L+  +  
Sbjct: 124 DAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  +++ ++ +LR+KL    G    I T+ G GYVLR+
Sbjct: 184 GYLGDPNVVETYVKQLRQKLEGD-GQTRLIHTIRGVGYVLRQ 224


>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 245

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  ++++ L SE +       G + +   +  +   I++D+ + ++ G   
Sbjct: 18  ILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIMMPELDGIRA 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR    + P+ +L+  S   DK+ GL  GADDYI+KPFN  E++AR+++ +RR    
Sbjct: 78  TAKLRE-GSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYTAL 136

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  L+  G +S++  AK V V G  + LT  EY +++LL        +       
Sbjct: 137 GGAEKAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIYEQ 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++         + V I  LR+K+        Y++ VWG GY + +  
Sbjct: 197 VWNDPAYGSENTVAVHIRHLREKIEINPAEPRYLKVVWGLGYKMDKGG 244


>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
 gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus vaginalis ATCC 51170]
          Length = 237

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IED++ ++  I+  L+ E +NV+    G++G++  +  + D I+LDL +  I G 
Sbjct: 4   INILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S E+ + GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 64  DLIKEIR-NKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L+       G  I LT  E+Q+I+ L    N   T+E  +
Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +     +YI+T++G GY 
Sbjct: 183 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGYK 227


>gi|253680891|ref|ZP_04861694.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562740|gb|EES92186.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 231

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ +++  I+L+L+ ++F V     GEDGI+         +ILD+ L  I GF+
Sbjct: 6   KVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDGFK 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   LR       + +L+ +    DK++GL+ GADDY+ KPFN  EL AR+ +++RR   
Sbjct: 66  VCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRRMSF 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S  ++  ++++    V+L++K       +++LT KE+ ++++       +L+++  L+  
Sbjct: 126 SNDNSSRILISEPFKVDLNSKIAYKNEEKLNLTPKEFLLLKIFIENIGISLSRDKLLDLA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + KI+DV I +LR KL +      Y++TVWG GY+ +E
Sbjct: 186 WGYNFVGDPKIVDVNIRRLRSKLEDDPSYPKYLQTVWGTGYIWKE 230


>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
 gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
          Length = 228

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+ A++  +   L+ E F V     G   +E    +    +ILD+ +  + G+ 
Sbjct: 3   KILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  K + PV +L+ +  I+ K++GL +GADDYISKPF  +E++AR+ A++RRS  
Sbjct: 63  VLEKIRE-KSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I  G L++N DA T+ + G  I LT ++  ++  L+ R N T T++  + H++
Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + +D+ + ++R+ L++    +  I T+ G GY  
Sbjct: 182 GMDYDGSDRAVDLAVKRIRQALTDWPETEGEIRTLRGMGYQF 223


>gi|299782927|gb|ADJ40925.1| Two-component response regulator [Lactobacillus fermentum CECT
           5716]
          Length = 240

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M+IL+IED++++   + +  K E ++      GE+ +E    +  +++ ++LDL L    
Sbjct: 1   MKILMIEDNRSVCEMMSMFFKKEKWDTTFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 120

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                      +  ++  I T    +N   +   + G+ I +LT KE+ +++ L+ +   
Sbjct: 121 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++  D
Sbjct: 181 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 238

Query: 228 E 228
           +
Sbjct: 239 D 239


>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pulsiensis BGSC 4CC1]
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S     DL ++   + V+     I LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 VKEEQNSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+         I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226


>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 269

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 17/237 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L+   + V     GE+ +++      D ++LD+ L  + GF V
Sbjct: 28  ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDGFAV 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   I  P+  LS + +I ++V GL  GADDY+SKPF+ +EL ARI  I+RR    
Sbjct: 88  CRRLRAESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPG 146

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           A           Q ++  G+L V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 147 ASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVPR 206

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRE 223
              L  L+    R   +++++DV++ +LR KL         I TV G GY    L E
Sbjct: 207 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRLNE 263


>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+K +A  I+  L+ E +   VT  G++ I++ +   FD +ILDL L  + G E
Sbjct: 7   RVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R+     P+ +L+      D++ GL  GADDY++KPF+ +EL+AR+RAI+RR+  
Sbjct: 67  ICNRIRLQS-DVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSN 125

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL V++       +G  + LT  E++++ +         ++E  +  
Sbjct: 126 EGVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         + IDV I  +R K+        YI TV+G GY   +
Sbjct: 186 VLGYDYVGYDRTIDVHIKNVRHKIE--CEQYKYIVTVYGVGYRFVK 229


>gi|319784552|ref|YP_004144028.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170440|gb|ADV13978.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 18  MKILVIEDDREAADYLQKAFAEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRASREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+         + TV G GY+L+
Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 239


>gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 230

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 130/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMAAAGYVVDRAYDGEEGHYLGDTEPYDAVVLDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +V G L ++       V G  + LT  EY+++  L    +  +++   + HLYD
Sbjct: 121 GHASSELVCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R E   DET
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRIRSEEGGDET 225


>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
 gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
          Length = 231

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D++ +   +    + E F   V   GE+ +   +      I+LD+ +  + GFE
Sbjct: 3   KMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +++      +K+ GL  GADDYI KPF+  E++AR+RAI+RR   
Sbjct: 63  VCRQIREES-AVPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRLSR 121

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +       L+++LD  T  V G  I LT KE +++  L+  +    +++  L+ +
Sbjct: 122 DGGARLQFFSYRGLTIDLDTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      + + +D  I +LR KL         I T+WG GY    N ++
Sbjct: 182 WGYDYYGDNRTVDSHIRRLRAKLDKRDHPGWSIATIWGVGYRFEVNDEE 230


>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
 gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
          Length = 240

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+  ++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
 gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           MM3]
          Length = 224

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAMVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 227

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 132/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+++L   I  ++ +E +       G DG+ L   Y++D  I+DLGL  + G 
Sbjct: 1   MRLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPLMDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR    + P+ IL+   + +DKV+GL++GADDY++KPF+ EEL ARI A++RR+ 
Sbjct: 61  TVIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G ++++  AK V   G  + LTG EY  +  L++     ++K     HLY 
Sbjct: 121 GHASSQLNYGPITIDTSAKRVYRDGAEVELTGFEYNTLTYLAMHPGKNISKLELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+VF+ +LRKKL    G  N I T  G GY   ++
Sbjct: 181 QDYDRDSNVIEVFVGRLRKKLDPD-GSLNLISTQRGLGYRFNDS 223


>gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32]
 gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222]
 gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32]
          Length = 239

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  S P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +S++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSTEESVVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKSLVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ +        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRLVEEDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 240

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR    +L++ED+ A+A  I + L+   F                    D I+LD  L  
Sbjct: 1   MRQQPGVLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLPG 60

Query: 57  IPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G  + +  R    +   P+ +L+      D+V GL +GADDYI+KPF+ +EL+AR+RA
Sbjct: 61  ESGLALAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR        ++  G LS++     V   G  + L   E+++++ L        ++  
Sbjct: 121 VLRRRAPEQVGGVVSVGALSLDTATYRVTFAGQPLKLGPTEFKLLQYLMSHAERVHSRGQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++      E + +DV + +LR+ L   AG    +ETV G GY L
Sbjct: 181 LLDKVWGDHVFIEERTVDVHVKRLREALGAQAG--QMVETVRGAGYRL 226


>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L + + +D +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLRAES-ATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDTKLIHTLRGVGYVLE 221


>gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 224

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +T V +L+   +I+ +V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    IIDV++  LRKK+ ++      I TV G GYVLR
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKV-DSQFETKLIHTVRGTGYVLR 221


>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 220

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 9/224 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED+K ++  ++L L    +       GE G++     E++ I+LDL L  I 
Sbjct: 2   MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R LR  K  TPV +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR
Sbjct: 62  GIEVCRRLREIK-QTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 120

Query: 119 SRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G++ ++     V  + + ++LT  E+ ++ LL       +++   L+ 
Sbjct: 121 MNFQKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   ++    +++V+I  LR K+    G K  IETV G GY L
Sbjct: 181 VWGYDEDVSTNVVEVYIRYLRNKI---PGIK--IETVRGVGYRL 219


>gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +LL++D+ A+   +  +L+ E F ++      E+ ++  +   +D +ILD+ L    GF+
Sbjct: 6   VLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  SS  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G   V+  A  ++V G  +  + + +Q++       N   +KE   
Sbjct: 125 QTTQPMKETHFISFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPEYIKTVRGLGYKF 231


>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 224

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A++  +   L+ E + V V + G   +      + D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 64  CRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNVD 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +    G + +++++    +    + L+ KE++++ +L       +T+E  +  ++D  
Sbjct: 124 QLTTGAHG-VKIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWDTT 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                K +D+ I  LRKKL + A    YI TV G G+   +N
Sbjct: 183 WWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224


>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 225

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+   + E   V     G D +E  +  +FD I++D+ +  + GF 
Sbjct: 3   KILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K + PV +LS      DK+ G + G DDY+ KPF+ +EL+AR+  IV R++ 
Sbjct: 63  AYKEIKKTK-NIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKK 121

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    L ++LD ++V V G R+ LT KEY+++  L+  KN  L++E  LN ++ 
Sbjct: 122 LNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                + + +D  I  LR  + +    + +I TV G GY   E+  +
Sbjct: 182 YDFYGDDRTVDTHIKMLRNSIKHY---RKFIVTVRGVGYKFEEDENN 225


>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 247

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ ++   +E  L+   + V  TD G+  +   +      ++LD+ L D+ GFE
Sbjct: 13  RLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+  L+  +  +D+++GL  G DDY+SKPF+ EE++ RI AI+RR+  
Sbjct: 73  VTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTAP 132

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S++   DL ++  A  V   G  I L+  E++++  L       ++K   L+
Sbjct: 133 VDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQILD 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H++      + +II+ ++  LR+K+         I+TV G GY LR   + E
Sbjct: 193 HVWSYDFAGDARIIETYVRYLRRKI--DCFEPPLIQTVRGVGYCLRLPREHE 242


>gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 240

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 123/229 (53%), Gaps = 12/229 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIPG 59
           I+++ED++ LA  +E  L+ E   V V   G   +E        E D I+LDL L ++ G
Sbjct: 4   IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R +R +KI TP+ +L+  S+  D+V GL+ GADDY++KPF+  EL AR+ AI+RR 
Sbjct: 64  LEICRRVRQSKI-TPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRV 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                        + I  GDL+++  ++ V  +G  +HLT KE+ ++ LL+       ++
Sbjct: 123 EMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  L+ ++        + +D  I +LRKKL         I T+WG GY 
Sbjct: 183 DYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYK 231


>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 234

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 123/230 (53%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ++  ++ + +K E  +V     G + +E+      D +ILD+ +    GFEV
Sbjct: 5   ILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSRG 121
             A+R   IS P+ ILS    + DK  G + GADDYI+KPF   ELV R  + +R RS  
Sbjct: 65  CSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRNRSPQ 124

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A+         S+I  GDLS+++D + V V   R+ LT KEY ++ L++ R N   T++
Sbjct: 125 EAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVVFTRQ 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++         ++ VFI KLR+K+        +I T WG GY + 
Sbjct: 185 QILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234


>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD+ ++  +   L+   + V     G   +        D ++LDL L  + G E
Sbjct: 4   RVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR      P+ +L+      D+V GLQ GADDY+SKPF+  ELV R+ +++RRS  
Sbjct: 64  VCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGG 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R    +++  G L V    +   + GH + LT +E+ ++  L         +   L  +
Sbjct: 124 PRAAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPVRAFRRAELLERV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +   + V + +LR+K+         I TVWG GY     
Sbjct: 184 WGWNF-GDQSTVTVHVRRLREKVEADPANPRRIVTVWGIGYRYEPT 228


>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  266 bits (681), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V     G DG  L     FD I++D+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L +LR A  +TPV  L+   S+ D+V+GL+SGADDY+ KPF   EL+AR+R I+RR  
Sbjct: 61  RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +  GDL++++  ++    G  I LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 VPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV + +LR K+ +       I+TV G GY L
Sbjct: 181 DMNFDSDTNVIDVAVRRLRMKV-DDGHDIKLIQTVRGMGYRL 221


>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis MSMB43]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 110/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  QG     ++ L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           N1-067]
 gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL
           S4-171]
          Length = 228

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K++     K ++ T+WG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDT--KPFLHTIWGVGYKFDET 227


>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 239

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F V   + G+  +E+ +  + +A ILD+ +  + GFE
Sbjct: 11  KVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L  LR   +  PV  L+   ++ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 71  LLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 130

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S I   DL++N D   V   G  + L+  E+ ++  L L     L+K   L++
Sbjct: 131 TETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILDN 190

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 191 VWHYDFGGDGNVVESYISYLRRKV--DQGEPQLINTVRGVGYVLR 233


>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 229

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I    L+++++++ V  +   I  T KE+ +IELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R KL       N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227


>gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 232

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  +   L  E F V V   G DG+ L     +D I+LD  L  I G 
Sbjct: 4   MKVLVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGMLPGIDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+    +ED+VRGLQ GADDY+ KPF   ELVAR+  ++RRS 
Sbjct: 64  AVLAALRQSR-QTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSV 122

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A       ++   DL ++L  +     G R+ LT KE+ ++ LL  R+   L++    
Sbjct: 123 GTAHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELA 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++D   + E  +++V + +LR KL         + TV G GYVL   A 
Sbjct: 183 SQVWDMNFDSETNVVEVAVRRLRLKLDQPFEQP-LLHTVRGMGYVLESRAP 232


>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
 gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. NAS-14.1]
          Length = 229

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE F+V   + GE+ I L      D IILD  +  + G E
Sbjct: 7   QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R    + PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  +  + +   D++++ +   V    + + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV I +LRK L  + GG + I TV G GY L
Sbjct: 187 WGRDIYVDTRTVDVHIARLRKAL-TSHGGDDPIRTVRGAGYAL 228


>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + +E+ L++E +NV+    GE+ +++ +  E   I+LD+ +  + G EV
Sbjct: 4   ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K + P+ +LS  S   DK++G+ +GADDY+ KPFN+ EL+ R++A++RRS   
Sbjct: 64  CRRVRE-KYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYFL 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++ LI    + ++     V +    + LT +E++++ LL+  +    + E    
Sbjct: 123 NLKMQVSEDLIRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+ +   G   I T+WG GY + +
Sbjct: 183 KVWKERYYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGYKIEK 229


>gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 241

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   I   L S N +V      E  ++    + +  I+LD+ L  + G  
Sbjct: 5   KILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINLPQMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R ++    +T V +L+ +SS  D+V GL+ GADDYI KPF   EL AR++  +R    
Sbjct: 65  LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                    S   ++  +  G L++   +  V +    ++LT  E+ ++   +   N   
Sbjct: 125 LLAGQNNDNSPADSEQTLNVGSLNIEFSSHQVYLGKQALNLTATEFDLLVYFARHPNHVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++  L+ ++  +       ++  I +LR KL         IETVWG GY L  +
Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLEEHQQAP-IIETVWGVGYKLNPS 238


>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
           10507]
          Length = 232

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +E+ LK+EN+ VY      + +E  +  E D  ILD+ L  + GF 
Sbjct: 4   KILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + P+ +L+      DK+ GL  GADDY++KPF   ELVAR++A +RR + 
Sbjct: 64  ICQKIRE-RYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++          + +    L +++      + G  + LT  E+ +++LL  +    ++ E
Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182

Query: 173 MFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++           I V I  LR+KL +      YI+T+WG GY +
Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGYKI 232


>gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 221

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +   LK   F V  T  G+      +  E+  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDALLGDGVRAGLKQAGFAVDWTQDGQAAKLALETEEYALMVLDLGLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A ++ PV +L+   ++ D+V GL +GADDY+ KPF+ +EL+AR+ A++RRS 
Sbjct: 61  DVLKWLRGANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GD+ +      V   G  + L  +E+ +   L L      ++E    HLY 
Sbjct: 121 GQVTLTLQHGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   ++V I  LRKKL +A      I T+ G GYV+ + +
Sbjct: 181 WGEEVESNSVEVHIHHLRKKLGSA-----LIRTIRGVGYVIDKES 220


>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
 gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 228

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   +   L+S +F V      ++  +L      D I+LD  L    G E+
Sbjct: 4   ILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSGLEL 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+    +   P+ ++S     ED+V+GL +GADDYI+KPF+  E+VAR++A++RR++
Sbjct: 64  AQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLRRAK 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I  G L ++     V   G  I +   EY+++       +   ++   L+ ++
Sbjct: 124 PDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRSQLLDQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   E + +DV + +LRK L    G    ++TV G GY   +
Sbjct: 184 GDQVYVEERTVDVHVRRLRKALEP-TGHDRLLQTVRGVGYRFSD 226


>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 238

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DD  +   ++L L+ E F V     GE  ++  K    D  I+D+ +  + 
Sbjct: 1   MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+++++ +R   +  P+ ILS  +   DK+ GL  GADD+I KPF+  E++AR++A +RR
Sbjct: 61  GYQLIKKVRET-LKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRR 119

Query: 119 SRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           S    ++        I  G+L ++  +  +      I L+  EY+++ L         TK
Sbjct: 120 SYEFNKNTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFTK 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     ++      +   I V I +LR+KL ++     YI+T+ G GY  
Sbjct: 180 KQIFERVWSDHYYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRF 229


>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
 gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
           regulator [Burkholderia multivorans ATCC 17616]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  +  G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis]
          Length = 245

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D+K +   I+ +L  E  + V       DG+        D +ILD+ L D  G+
Sbjct: 17  KVLIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIMLPDGEGY 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 77  DICKQIRDIS-HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 135

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  G   +N     +   G  I LT KE  ++       N  ++KE    
Sbjct: 136 YLQPSQTGTVIKKGPFELNQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          + V I +LR+K+ N     +++ TV G GY  
Sbjct: 196 AVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 240


>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 225

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A+  +++L L  +   V V   GE+ +   K    D I+LD+ L  + GFEV
Sbjct: 4   LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRQIRRT-EQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              + V GDL+V+  A TV   G  I LT  E +++  LS      L+++  L  +++  
Sbjct: 123 TSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  + +LR K+ +       I+TV G GY L   
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRLDPP 224


>gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23]
 gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
 gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23]
 gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W]
 gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II]
          Length = 242

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 18/243 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ ++A  + +  + E + V     GE+G+   K     FD I LDL L  + 
Sbjct: 1   MKLLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQS-------------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLR 164
           +   A+               + T    ++   +   + G +I  LT KE+ ++  LS  
Sbjct: 121 AEVGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLSKS 180

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++
Sbjct: 181 PKQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKVEKV--GPQIIQTVWGVGYKFDDS 238

Query: 225 AKD 227
             D
Sbjct: 239 GLD 241


>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 238

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R +++ED+ ALA  +   L+ + F V VT  G D + L +  + D ++LDLGL  + G E
Sbjct: 7   RAMVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLPGLDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  +   D + GL  GADDYI+KPF+  EL ARI+A +RR R 
Sbjct: 67  VCRRLRTFSDAY-VVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRT 125

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                          V GDLS+++  + V V G  +HLT  E+ ++  LS    T  ++ 
Sbjct: 126 GFTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRA 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ ++      +  ++DV I  +R+KL + A    Y+ TV G GY +
Sbjct: 186 RLIDTVWGPEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGYRM 234


>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 269

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE+ + L    + D ++LD+ L  + GF V
Sbjct: 26  LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+R     
Sbjct: 86  CRRLRAESC-VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 R     Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 145 SAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E + V   + G   I++C+  +FD I++D+ + D  GF 
Sbjct: 3   RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K   PV +LS   +  DK+ G + G DDY++KPF+  EL+ARI+A++ RS+ 
Sbjct: 63  ACKKIKEFK-DIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G + ++    TV V G R  LT KEY ++      +   LT++  LN 
Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + +D  I  LR KL      ++ I+TV G GY   
Sbjct: 182 VWGYDSFGVDRTVDWQIKLLRSKLG---SCRDCIKTVRGVGYKFE 223


>gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
 gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC
           43380]
          Length = 241

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + I+  +      I+LDL L  + G  +
Sbjct: 16  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTKGTEVIDAVRQAPPSIILLDLMLPGLDGISI 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR +  
Sbjct: 76  CREIRRFS-NVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    T  L ++        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 135 PEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 195 RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 234


>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 222

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +E   KSE F V +    ++ ++    Y F  +ILDLGL D  G E
Sbjct: 3   QILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGLPDADGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ P+ IL+    ++DKV GL  GADDY+ KPF+ +EL+AR++A +R    
Sbjct: 63  VLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFTP 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      + T  L ++L A+ V      + L  +E+ ++E L    +  L+++  L+ +
Sbjct: 123 RATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV+I  LRKKL +       IETV G GY L+
Sbjct: 183 WGYDYDPGSNIVDVYIGYLRKKLGSD-----LIETVRGIGYRLK 221


>gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
 gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
          Length = 242

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L  E F V     GE+ +++         ILD+ +  +   E+
Sbjct: 16  ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDEIEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    S P+  LS  SS  DKV G  +GADDYI KPF+  E +AR++A +RR    
Sbjct: 76  CRRIREKH-SLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYF 134

Query: 123 AQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            Q+        I    L ++  ++TV + G  I+LT  EY ++ L++  +N   T E   
Sbjct: 135 NQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIY 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  R       + V I +LR K+        +I+ VWG GY + +
Sbjct: 195 ESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 242


>gi|13476389|ref|NP_107959.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14027150|dbj|BAB54104.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 239

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 16  MKILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 76  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+         + TV G GY+L+
Sbjct: 196 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 237


>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
 gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
           16841]
          Length = 223

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 9/222 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++  L+   + V V + G + + L     +D I+LD+ L  I G+ 
Sbjct: 3   RILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGYG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+ +S  ED+++GL    DDYI+KPF+   L+ +I A++RRS  
Sbjct: 63  VCELIRKQS-DVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  G+L +N D+ T  V G    LT KE++++  L   +   LT++  L+ L
Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +      + +++D  I  LRKKL        +I+T+ G GY 
Sbjct: 182 WRYDFYGDERVVDTHIKNLRKKLGID-----FIQTIRGVGYK 218


>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
 gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L          +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+   + ++   + V V    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDFIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 224

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++E+++ LA  +EL LK E ++V V   G  G    + +  D II++  L  + G E
Sbjct: 4   RVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++    +E++V GL +GADDYI KPFN +E  ARIR  +RR+  
Sbjct: 64  LCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRRTHT 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++   DL  N   + ++     I LT KE+++++ L       LT+E  L  ++  
Sbjct: 124 TSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQILERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  II+V+I  LR KL  AAG    I+TV G GYVLR+
Sbjct: 184 DFMGDSNIIEVYIRYLRLKLE-AAGEPRLIQTVRGVGYVLRD 224


>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 241

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/238 (36%), Positives = 140/238 (58%), Gaps = 9/238 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +++ L+ E++ V V   G+ G+E     ++D I+LD+ L  + G E
Sbjct: 4   KILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RS- 119
           VLR LR A++ TPV +L+  ++  DKV GL  GA+DY++KPF  EEL+AR+R+ +R RS 
Sbjct: 64  VLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRSL 123

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +     L+   DL++NL+ + V      I LT KEY ++  L   KN  +T+E 
Sbjct: 124 VEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTREG 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            L +++    E E  +IDV+I  LRKK+ +     + I TV G GY+++E   ++  E
Sbjct: 184 ILTNVWGYEYEGETNVIDVYIRHLRKKV-DEGFSTSLIHTVRGVGYMMKEEKHEDHDE 240


>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           ATCC 27126]
          Length = 229

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   ++ +L+   FN+   +  +   E       D I+LD  L    G ++
Sbjct: 5   VLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWMLPGGSGVQL 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++L+  +     PV +L+     EDK+RGL +GADDY++KPF+ +ELVARI+A++RR +
Sbjct: 65  AKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRVT 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I    L +   +  V      + +   E++++           ++E+ L++++
Sbjct: 125 PTSSEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK +S   G    I+TV G GY  
Sbjct: 185 GTNVYVEDRTVDVHIRRLRKAISRH-GHDAMIQTVRGAGYRF 225


>gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580]
 gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
 gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
           14580]
 gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+A+A  +   L SE F     + G  G+     ++ D ++LD  L D  G +
Sbjct: 5   KILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWMLPDCSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +     + P+ +++  S I DK+ GL+ GADDYI+KPF+  E+VARIR I+RR   
Sbjct: 65  ICKKV-TESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLEQ 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I   ++ +    + V+  G  + LT KEY ++  L   +    T+ 
Sbjct: 124 AHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTRS 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++      + + +D  I +LRKKL  +    + I+TV+G GY   +  +
Sbjct: 184 ELLEFIWGYDFFGDTRTVDTHIQRLRKKLDAS----DLIKTVFGIGYKFEKQEE 233


>gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262]
 gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262]
 gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           S4-378]
          Length = 228

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
            H      + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 NHTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K++     K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDT--KPFLHTVWGVGYKFDET 227


>gi|16803547|ref|NP_465032.1| hypothetical protein lmo1507 [Listeria monocytogenes EGD-e]
 gi|47097204|ref|ZP_00234768.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224501553|ref|ZP_03669860.1| hypothetical protein LmonFR_03382 [Listeria monocytogenes FSL
           R2-561]
 gi|254828259|ref|ZP_05232946.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254898327|ref|ZP_05258251.1| hypothetical protein LmonJ_00890 [Listeria monocytogenes J0161]
 gi|254912181|ref|ZP_05262193.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254936509|ref|ZP_05268206.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284801897|ref|YP_003413762.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284995039|ref|YP_003416807.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|16410936|emb|CAC99585.1| lmo1507 [Listeria monocytogenes EGD-e]
 gi|47014418|gb|EAL05387.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258600647|gb|EEW13972.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258609103|gb|EEW21711.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|284057459|gb|ADB68400.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578]
 gi|284060506|gb|ADB71445.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923]
 gi|293590154|gb|EFF98488.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 228

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     ++D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  Q   +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
           [Corynebacterium pseudotuberculosis C231]
 gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
           pseudotuberculosis I19]
          Length = 237

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + LK + F+V   + G + +E+ K ++ DA ILD+ +  + G+E
Sbjct: 10  RILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGSS 129

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +V  DL++N D   V   G  + L+  E+ ++  L L     ++K   L+H
Sbjct: 130 VEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILDH 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+ 
Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKI--DTHDPQLIQTVRGVGYVLRKP 234


>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 236

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 11/232 (4%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++D+ ++   +   L    + V     G + IE+    + D IILD+ L DI GF V 
Sbjct: 1   MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R   I+ PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R   
Sbjct: 61  RRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQV 120

Query: 124 Q--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +   +I  GDL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++  
Sbjct: 121 EDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAA---------GGKNYIETVWGRGYVLREN 224
               +  I++ +I  LRKK+ +                IET  G GY++R  
Sbjct: 181 DWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMIRAP 232


>gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649]
 gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649]
          Length = 247

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L++EDD  +A  I   L+ E + V ++  G   ++  + ++ D ++LDLGL    G E
Sbjct: 20  RALVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGLPGQDGIE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  +   D + GL  GADDY++KPF+  ELVAR+RA+ RR R 
Sbjct: 80  VCRQLRTFSDAY-VVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPRP 138

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H  +L   G L+++   + V +    + LT  E+ ++ +LS R     ++   ++
Sbjct: 139 IDGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLID 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ G    +  ++DV I  LR+KL + AG   +I TV G GY +
Sbjct: 199 QVWGGTWVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGYRM 243


>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
          Length = 258

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L H ++  L  EN    +   G++GI   K  E+  +ILD+ +  + GF+
Sbjct: 31  KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R      PV +L+  S    KV GL+SGADDY++KPF+ +E +AR+ +++RR   
Sbjct: 91  VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 149

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   +L+++L++++V  +   + L  KE+ ++   +  +   LTK+    
Sbjct: 150 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 209

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I KLRKK+ +      YI+TV G GY   ++ 
Sbjct: 210 KVWQEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRFSKDV 258


>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+K LAH +  +L+ E+  V +   G  G+EL +   +DA++LD+ L ++ GF
Sbjct: 1   MHILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R   + +PV +L+   S+ED+V GL  GADDY+ KPF  EEL+AR+ A++RR  
Sbjct: 61  EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L           I LT KE+ ++E L       LT+    + +
Sbjct: 121 RTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E    ++D++I  LR K+         I+TV G GY L 
Sbjct: 181 WRYDLEALSNVVDIYIHYLRDKIDQGFTRP-LIKTVRGIGYKLE 223


>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 227

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E F V     G   IE+C+  +FD II+D+ + ++ GF 
Sbjct: 3   RILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K  TP+ +LS      DK+ G + G+DDY+ KPF+ +EL+ R+ A+++RS+G
Sbjct: 63  ACREIRKFK-KTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                           LSV+  A+ V + G RI +T KEY++   +   K   LT+E  +
Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + + +D  I  LRK L   +     I T+ G GY   
Sbjct: 182 SEVWGYDFFGDERTLDTHIKLLRKSLGEYS---RCIVTLRGVGYRFE 225


>gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1]
          Length = 236

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+  S   D V+GL +GADDY+ KPF   EL+ARIRA +R     
Sbjct: 70  CQDIRRESG-VPIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
 gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
           15053]
          Length = 241

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   I   ++      +  D G D + + K    D +ILD+ +  + GF V
Sbjct: 23  VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFSV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +  R    + P+ +L+     +DK++G + GADDY++KPF+ + L+A+  A++RRS   
Sbjct: 83  CKLAREMS-NMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G + V   +  V + G  I LT KEY+++  L +       ++  LN ++   
Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGYD 201

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +D  I  LR+KL +      +I T+   GY   
Sbjct: 202 FEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 238


>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium HTCC2083]
 gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 227

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A    +   L++E + V   + G++G+ L +    D I+LD  L ++ G EV
Sbjct: 6   ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   P+ +LS  S   DKVRGL++GADDY++KP++ +EL+AR++A +RR+R
Sbjct: 66  CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  + +   D+ +N +   V   G  + L   EY+++  L  +      +E  L+H++
Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L  A GG + I T+ G GY  
Sbjct: 186 GRDAFVDTRTVDVHVGRLRKAL-TAEGGSDPIRTIRGTGYAF 226


>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
 gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal:Sugar transporter superfamily [Fulvimarina
           pelagi HTCC2506]
          Length = 219

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L++  + V     GE+G  L     +DAI+LD+GL  + G 
Sbjct: 1   MRVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R  +   PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++     V V G  + LT  EY++++ L   +++ +++   + HLYD
Sbjct: 121 GHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDYLMHHQDSVVSRSELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKK+         IET+ G+GY LR
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGID-----LIETIRGQGYRLR 217


>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 235

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +D+  +A  ++L L+ E + V V   G +  EL +    D  ILD+ +  + GF
Sbjct: 3   MTILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPLMDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R    + PV ++S  +S  DK+ GL  GADD+I+KPFN  E+VAR++A +RR+ 
Sbjct: 63  ALLKHIRTIH-TFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRRAN 121

Query: 121 G--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                            G L ++  + T+      I LT  EY++++   L      TK 
Sbjct: 122 EFNKPSVPEQPADTTTLGRLVLDHSSCTLLRGDEPIPLTALEYRLLKTFMLSPGKIFTKR 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++      +   I V I +LR+K+        YI+TV G GY  +E
Sbjct: 182 HLFELVWSDLYLGDDNAIMVQISRLREKIEEQPKQPRYIQTVRGLGYKFQE 232


>gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILLI+D+ A+   +  +L+ E F ++      E  + L +   +D IILD+ L    GF+
Sbjct: 6   ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPILRQ-KTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 H--AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  I     G   ++  +  + V G+ +  + + +Q++       N   +KE    
Sbjct: 125 QNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELYE 184

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230


>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
 gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 224

 Score =  265 bits (680), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R++A+++R R  
Sbjct: 64  CKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+E  ++ ++   
Sbjct: 124 STQTIQFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 184 YAGDDRTVDVHIKRLRERFATTPDF--RIETVRGLGYRLE 221


>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 239

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +LL++D+ ++   +E+ L+ E F  +     GE+G+ L +    D ++LD+ L D+ GFE
Sbjct: 4   LLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+  L+  S+  DK+ GL  G DDYI+KPFN  E+VAR++A +RR + 
Sbjct: 64  VCRRLRSF-TTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQQL 122

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q +         G   ++  A  + V+G  +    +E+Q++  L    N   +K    
Sbjct: 123 AGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++      E   + V + +LR+K+        Y+ TV G GY L    +
Sbjct: 183 EQVWGEESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKLLPPEE 233


>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
 gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
          Length = 231

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y+   G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
           turnerae T7901]
 gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Teredinibacter turnerae T7901]
          Length = 235

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++A+   + + L+  ++ V      ++  ++      D I+LD  +  + G E
Sbjct: 5   KILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R L+  +++   P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RRS
Sbjct: 65  FARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRRS 124

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    I   +L ++  +  V + G  + L   EY+++E     +    ++   L+++
Sbjct: 125 DSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQLLDYV 184

Query: 179 YDGRDEPEVKIIDVFICKLRK--KLSNAAGGKNYIETVWGRGYVL 221
           + G    E + +DV I +LRK  KL N       ++TV G GY  
Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALKLEN---HDRLVQTVRGAGYRF 226


>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
 gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
           30120]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   F     D  +  I        D ++LD  +    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V++ ++        PV +L+     ED+V+GL+ GADDY+ KPF+ +EL+AR++AI+RR 
Sbjct: 64  VIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    + +I    L ++  +  V      I +   EY+++           ++E  LN++
Sbjct: 124 SPMSTEDIIEMNGLVLDPTSHRVTSNEIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGANVYVEDRTVDVHIRRLRKALELD-GHDKMVQTVRGTGYRF 225


>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 227

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      ++ I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S     DL ++   + V+   H + LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 IKEEENSSYQIADLYLDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LR+K+         I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRRKIDCNVDVP-LIHTVRGVGYVLK 226


>gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
 gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter
           nodosus VCS1703A]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD+  A  I   L    + V     G  G+ + +  ++D +I+D  L ++ G 
Sbjct: 1   MHILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    STPV ILS +  ++D+V GL +G DDY+ KP+   EL+AR++++ RR  
Sbjct: 61  SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H Q ++   DL ++   + V   G +I+L  +E++++E L       +T+ M L  +
Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++   +P+  +IDV I +LR K+         I T  G GY
Sbjct: 181 WEYNFDPQTNVIDVHISRLRSKIDKDF-NPPLIHTERGAGY 220


>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
 gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
 gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
 gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
 gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
          Length = 222

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +   I   L +E + V   + G +GI+  K   +D +ILD+ + ++ G+ V
Sbjct: 5   ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+  L+ ++   D+++G     DDYI+KPF+   L+ R+ AI+RRS   
Sbjct: 65  CKMIR-KSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKT 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                IV   L ++L+    E+ G  I LT KE+ +++ L  +    +T+E  L+ ++  
Sbjct: 124 INDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +I+D  I  +RKK+S       YI+TV G GY L ++
Sbjct: 184 DYYGDTRIVDAHIKNIRKKISL-----PYIKTVKGIGYTLEKD 221


>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
 gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD + A  +   L    + V     G DG+ L     FD II D  L  + G  
Sbjct: 4   KILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ A+R A ISTPV ILS +++++D+V GL++GADDY+ KPF+  EL ARI A+VRRS  
Sbjct: 64  MVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSDR 123

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A       +  GDL ++L A+TV   G  I +  +E+ ++E L+      +T+ M L  
Sbjct: 124 AASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +P   ++DV I +LR+KL    G    + TV G GY L
Sbjct: 184 IWNYHFDPGSNVVDVHIGRLRRKLEEGFGTP-ILHTVRGAGYRL 226


>gi|320664822|gb|EFX31957.1| DNA-binding transcriptional activator CusR [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 227

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV + +LR K+ N       I+T+ G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKRLRGKIDNDF-EPKLIQTLRGVGYMLE 222


>gi|315441548|ref|YP_004074425.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265203|gb|ADU01944.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 251

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L  E+F   + D G D + + + ++ D +ILDLGL  + G E
Sbjct: 19  RALVVDDEAALAEVVASYLNREHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVAKPFSPRELVARIRAMLRRPRA 137

Query: 122 HAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +            +  G L +++  + V + G  I LT  E+ ++  LS R    L++
Sbjct: 138 TPEPESDRGGDLPAPLSFGPLRIDVAGREVSLDGEPILLTRTEFDILAALSARPGVVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + +G       ++DV I  +R+KL +      Y+ TV G GY +
Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
 gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia billingiae Eb661]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  + L      D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMSDTQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LTGHDRMVQTVRGTGYRF 225


>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 226

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G++G+       +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTRDWVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR A   TPV  L+   ++ED+V+GL+S A+DY+ KPF+  EL+AR+RA +R   
Sbjct: 61  QVLKALRTAN-QTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRNHS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + + +  + ++ 
Sbjct: 120 PH-HTYLKISGLEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E   +DV I +LR K+ +       I TV G GY  R +   E 
Sbjct: 179 INFDSETNTVDVAIRRLRSKV-DDPFDVKLIGTVRGMGYRFRADEHHEA 226


>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57
           MR +L+++DDK ++  I + L++E + V     GE+ ++         D +ILD+ +  +
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +  R +R    S P+ +LS  S   DK+ GL +GADDY+ KPFN  EL  R++ ++R
Sbjct: 61  NGIDTCRRIRE-NSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119

Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS  +           I    L +N     V   GH I LT +E++++ LL+ +     +
Sbjct: 120 RSTQYNVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++  +       + V I  LR KL    G K  I+TVWG GY +
Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGYK-LIQTVWGVGYKI 229


>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 256

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +EL      D ++LD+ L  + GF V
Sbjct: 14  ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDGFAV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI +I+R     
Sbjct: 74  CRRLRAESC-VPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGRG 132

Query: 118 ------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                 R     Q ++  GDL V+ + + V     RI LT  E+ ++ELL       + +
Sbjct: 133 SATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVPR 192

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 193 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242


>gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 237

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E +LK E FN VY     ++G+      + + +ILD+ L D  G+
Sbjct: 4   KILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R +K + P+  LS  +   DK+ G   G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 64  EICKDIR-SKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + +I  G   +N     +   G  I LT KE +++ LL+  +N  ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   + ++          I V I KLR+K+ + +    YI TV G GY L
Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEDDSSNPQYILTVRGLGYKL 232


>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
 gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
           protein [Synechococcus sp. RS9916]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 119/215 (55%), Gaps = 1/215 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL +D+  +   +E+ L++E F V     G   ++  +    D  +LD  +  + G ++
Sbjct: 8   VLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +  PV +++    ++D+V  L++GADD+I+KPFN  E++AR +A++RRS+G 
Sbjct: 68  CRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGF 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +  ++  GDL +N   +T  + G  + LT +E+ ++E         L++   + H++   
Sbjct: 128 SSDVLQVGDLVLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWGDD 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
              +  ++DV++  LRKKL  A G +  I+TV G 
Sbjct: 188 YFGDENVVDVYVRYLRKKLE-ATGSQRVIQTVRGV 221


>gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
          Length = 228

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR    S PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + +
Sbjct: 121 SNLPVQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +I+V I +LR K+ +       + T  G GY+L  +A+DE
Sbjct: 181 WDMNFDSDTNVIEVAIRRLRAKIDDDF-EAKLLHTCRGMGYML--DAQDE 227


>gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 235

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   ++ + + + ++V V   G+ G++  +   + A++LDL L +I G +
Sbjct: 13  QILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + ++  +   PV ++S ++ + DKV  L+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 73  VCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQK 132

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +    GD  ++    T    G  I LT  E+++++         L++++ LN ++ 
Sbjct: 133 TSAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVWG 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               P  + +D  I KLR+KL   +    Y+ TV+G GY    
Sbjct: 193 YNSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGYKFVP 235


>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L++ED++++   I + LK   F+V     G + +   +   + D  +LD+ +  I GF
Sbjct: 3   KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR  
Sbjct: 63  EVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 122

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + +S       +G  +++L +K  +  G  I LT  E+ +I+    ++NT L++++ L+
Sbjct: 123 VYRESSAKVTFTSGPFTLDLISKQFKKNGRLIELTPTEFSLIQFFLEKENTPLSRDVLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++      + KI+DV I +LR+K+        +++TVWG GY  +   +
Sbjct: 183 HVWGKEYMGDPKIVDVNIRRLRQKIETNPSEPAFLQTVWGHGYKWKGEGQ 232


>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
 gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G++  E+ +      +ILD+ + ++ G EV
Sbjct: 4   ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++ I+RR +  
Sbjct: 64  CKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRRIQNI 123

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +        + G + ++ D   V V    +HLT  E+ ++ LL+       + E    
Sbjct: 124 QANSSVDTAKTIIGPIVIDKDQHIVTVNEKELHLTTSEFDILYLLASEPGRVFSSEYIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A  G+N I+T+WG GY + 
Sbjct: 184 KIWQEKALGASKTVMVHISNLRDKLRVAMAGENVIKTIWGVGYKIE 229


>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K        N+I TVWG GY    N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227


>gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894]
          Length = 226

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 130/229 (56%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+      +E  L+     V     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKLLLIEDNDKTRAWLEKGLREAGLVVDTVADGRDGLHLALEQDYALIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR AK +TPV  L+   ++ D+V+GL+ GADDY+ KPF+  EL+AR+RA +RR  
Sbjct: 61  QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + +   DL+++         G RI LT +E+ ++ LL+ R    L + +  + ++ 
Sbjct: 120 PAAAT-LQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E  ++DV I +LRKK+ +       IETV G GY L  NA +++
Sbjct: 179 INFDSETNVVDVAIRRLRKKI-DDPFPLKLIETVRGMGYRL--NAPEQS 224


>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +       +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R      PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVRKES-QIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 RGHAQS----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             + ++     I  G L +  D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+ +A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|300780103|ref|ZP_07089959.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534213|gb|EFK55272.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 259

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 33  RVLVVDDEQPLAQMVASYLIRAGFDTRQAYTGTQAVDEARRFSPDVVVLDLGLPELDGLE 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   +R       + +L+   + +DK+ GL  GADDYI+KPF   ELV R+ A++RR R 
Sbjct: 93  VCGRIRTFS-DCYILMLTARGTEDDKITGLTLGADDYITKPFGIRELVTRVHAVLRRPRT 151

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  G+L+++  A  V+V    + LT  E++++  L+LR    LT+   + 
Sbjct: 152 STIPPQVTTPLTVGELTIDPAAHKVQVGEVVVDLTRTEFELLVTLALRPGQVLTRHDLVT 211

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +IETV G GY 
Sbjct: 212 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIETVRGVGYR 255


>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 233

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  ++  I+  L+ + + V     G++ +E  K +    IILDL L DI G E
Sbjct: 7   KILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLMLPDISGEE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    S P+ +L+   S ++ + GL  GADDY+ KPF+  +L+AR+ A++RR   
Sbjct: 67  ICKRIR-KNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRVVK 125

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +         GDL ++     +   G+ I++T  EY+++  ++     T T++  +N
Sbjct: 126 EPVADTGKIIFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDELIN 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  E   + +D  I  LR+K+ +      Y+ TV G GY  
Sbjct: 186 MALGDDFEGFDRTVDTHIKNLRQKIEDDPKTPRYLVTVHGIGYRF 230


>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
 gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
           20544]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++ +A  +++ L+ E F   + + G    E      FD ++LD+ L  + G  
Sbjct: 6   RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    S P+ +L+    +EDKV GL  GADDY++KPF  EEL+ARIR  +R+   
Sbjct: 66  ICKRVREVS-SLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +   +L +      VEV G  +HLT KEY ++E +   K T LT++  L 
Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      +  ++DV+I  LR KL +    + YI TV G GY ++E
Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGYAVKE 230


>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
 gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
 gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
           A]
          Length = 231

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|260462374|ref|ZP_05810582.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031868|gb|EEW33136.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++          +V   GE G  L    ++D +++D  +    G 
Sbjct: 18  MKILVIEDDREAADYLQKAFNEAGHTAHVAGDGETGFALADTGDYDVMVIDRMMPRRDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            V+  LR    +TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR S
Sbjct: 78  SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 137

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + +V      I L  +E++++E L       +T+ M L +++
Sbjct: 138 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+         + TV G GY+L+
Sbjct: 198 DYHFDPQTNVIDVHVSRLRGKIEKGFDKP-ILHTVRGAGYMLK 239


>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
 gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 225

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           ++L+++D+  +   +   L  + + V     GE  +++  K  +   IILD+ +  + G+
Sbjct: 5   KVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPKLDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R      P+ +L+      D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  GVCREIRKDS-KIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTS 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  ++  G + +N  + T  + G  + L+ KE++++      +   L++E  LN ++
Sbjct: 124 AIGSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR K+        YI+T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKIGAKG---EYIKTIWGMGYKFE 223


>gi|152983086|ref|YP_001353412.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151283163|gb|ABR91573.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V   + G DG  L     +D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGSYDLIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR A  S P   L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILHALRSAGNSVPALFLTARDGVADRVKGLELGADDYMVKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++L  +     G R+ LT KE+ ++E L   K   L + +  + ++
Sbjct: 121 PSPLVDRLQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D     +  +IDV I +LR K+ +       I T+ G GYVL + A
Sbjct: 181 DINFNSDTNVIDVAIRRLRAKMDDD-YDPKLISTIRGVGYVLEDPA 225


>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
          Length = 241

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E+ L+ ENF N+     G+D ++L K   +D I+LD+ L DI GF
Sbjct: 6   KILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDISGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+   +R    +TP+  +S  S+  DK+ GL  G DDYI+KPFN  E+VARI+ I+RR  
Sbjct: 66  ELCTEIR-KHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S     S    G  ++N ++ T+ V    +  T KE +++       N   T    
Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              ++      E K + + I KLRKKL +       I  + G GY      +D  CE
Sbjct: 185 YEFVWGNDVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPKEDSLCE 241


>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    L    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +    TP+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++S I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PVDSESPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
 gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sulfitobacter sp. EE-36]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+ A    +   L+SE F+V   + GE+ I L      D IILD  +  + G E
Sbjct: 7   QILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIE 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R    + PV +LS  S   D VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRV 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  +  + +   D++++ +   V    + + L   EY+++  L  R     +++  L+H+
Sbjct: 127 RPASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV I +LRK L  + GG + I TV G GY L
Sbjct: 187 WGRDIYVDTRTVDVHIARLRKAL-TSHGGDDPIRTVRGAGYAL 228


>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
 gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
 gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
 gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum MolK2]
 gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
           [Ralstonia solanacearum IPO1609]
          Length = 237

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L+            E  + L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR  + +   P+ +L+  S  +DK+ GL  GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEM 173
                 ++    L ++     V            + L   E++++  L        ++  
Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L+   G    IETV G GY L  N 
Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAP-GGYSTMIETVRGSGYRLARNP 235


>gi|120553936|ref|YP_958287.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120323785|gb|ABM18100.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 233

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   + + +        + D G+ G+   +    D +ILDL L  + G  V
Sbjct: 5   VLIIEDNPGIGELVRMQVSDLGMTAVLRDRGDSGLARFRDGGIDLVILDLMLPGLDGLAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R +    PV +L+  S+  D+V GL+ GADDY++KPF+  EL ARI+A+ RR    
Sbjct: 65  CREIRASAGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARIKALFRRVDAL 124

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S     + I    L ++   + V ++   + LT +E+ ++   +  +    ++   
Sbjct: 125 SRKSSAEDDVAEIEADGLRIDPVRRRVFLECRELDLTAREFDLLWHFASHRGRVFSRAQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ ++    +     ++  I +LR K+        Y++TVWG GY  
Sbjct: 185 LDAVWGYNHDGYEHTVNTHINRLRNKIEPDPAEPRYVQTVWGVGYRF 231


>gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900]
          Length = 254

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR   I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254


>gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
 gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           Rock4-2]
 gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           F65185]
          Length = 224

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+       +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSAALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 228

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+A  +   L+ E + V     GE+ +   +  E   ++LD+ L  + G EV
Sbjct: 5   ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV +L+ +  +E++VRGL++GADDY+ KPF  EEL+ARI A++RRS+  
Sbjct: 65  CRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQ 124

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L+++L+A+T       + LT +E+ ++  L       +++      ++  
Sbjct: 125 PTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGH 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +    +++V+I  LR+KL  A G   YI TV G GY    
Sbjct: 185 DFDHGTSLLEVYISYLRRKLQEA-GCPGYIATVRGVGYRYEP 225


>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           95/8201]
 gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar pondicheriensis BGSC 4BA1]
 gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 227

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S     DL ++   + V+     I LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+         I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226


>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 209

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 5/212 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTG 130
             P+  L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++   Q  I  G
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFG 119

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            + +N  ++ +E  G  I LT KE+ ++  L        ++E  L  ++        + +
Sbjct: 120 PILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTV 179

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 DTHVKTMRLKLGESG---NYIQTVWGVGYKFE 208


>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
 gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
           12042]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D++++ + +    K   + + +   G++G+     Y+ D I+LD+ L DI G
Sbjct: 1   MKTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV + +R      P+ +++  ++ +D+V GL  GADDYI KPF+ +E++ARIRA++RR+
Sbjct: 61  FEVCQCIRKVS-RVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRT 119

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  Q+  V G+L +      V + G+ I+LT KE +++ LL+       ++E+ L+ +
Sbjct: 120 EDNPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E   + +D  + +LR KL         I+T+WG GY  
Sbjct: 180 WGYSGESYDRAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGYSF 222


>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
 gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio salexigens DSM 2638]
          Length = 232

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L+   + V     GE  IE  K      +ILD+ +    G EV
Sbjct: 7   VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR    + PV +L+      D++ GL+ GADDYISKPFN  EL+ARI+A++RR++G 
Sbjct: 67  LRDLRP-HSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125

Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   +G      + +++  + +E++G  + L+  E+++++ L       +T++  +  
Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + IDV I KLR         ++ I+TVWG GY+  
Sbjct: 186 VWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFV 230


>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
 gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
          Length = 233

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 122/230 (53%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  IE+ LK+EN+ V+      + +E       D  ILD+ L DI GF 
Sbjct: 4   KILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDISGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + PV +L+   +  DK+ GL  GADDYI+KPF   E+VAR+++ +RR + 
Sbjct: 64  LCQKIRE-RYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + +I+  +L++++      +    I LT  E+ ++++L   +   ++ E  
Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + ++           I V I +LR+KL +      YI+T+WG GY + E
Sbjct: 183 FHRIWKDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIEE 232


>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 245

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++A  I++ LK   + +     G + ++     +FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+ IL+     +D V G + GADDYI+KPF   EL+AR+ AI+RR  G
Sbjct: 80  ACQRIRERS-DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  G++ ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+         I TV G GY + E
Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKMAE 244


>gi|83951898|ref|ZP_00960630.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
 gi|83836904|gb|EAP76201.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM]
          Length = 233

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 145/222 (65%), Positives = 181/222 (81%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD   + SIE+ML   N NVY T LGE+G++L + Y++D I+LDLGL D+ G EVLR L
Sbjct: 2   EDDPTTSKSIEMMLSHANLNVYTTSLGEEGVDLARLYDYDLILLDLGLPDMTGHEVLRQL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R+A+I TP+ ILSG    ++K++G   GADDY++KPF+++ELVARI AI+RRS+GH+QS+
Sbjct: 62  RLARIETPILILSGSDDTDNKIKGFGFGADDYLTKPFHRDELVARIHAIIRRSKGHSQSV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I TG+++VNLDAKTV+V G  +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY G DEPE
Sbjct: 122 IRTGEINVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPE 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +KIIDVFICKLRKKLS A GG N+IETVWGRGYVLR+    +
Sbjct: 182 LKIIDVFICKLRKKLSQATGGDNHIETVWGRGYVLRDPESTQ 223


>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ +K+E +   +   G + +   +   +   IILD+ + D+ G
Sbjct: 1   MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+RA++RR+
Sbjct: 61  TEVLKEVRKDNP-VPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++N D+  V    G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNGMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR KL  A GG   ++TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGYKIE 227


>gi|315282416|ref|ZP_07870834.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
 gi|313613939|gb|EFR87665.1| transcriptional regulatory protein SrrA [Listeria marthii FSL
           S4-120]
          Length = 228

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     ++D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
             A     + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SAAPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +IE+ LK+E++ VY    G + + +   YE   +I+D+ +  + G 
Sbjct: 1   MNILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEALLVFDNYEIHLVIIDIMMPVMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                +R  K + PV +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++++RR  
Sbjct: 61  RATMKIRE-KYNIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRRYV 119

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +  TG L ++ DAK V++    + LT  EY++++ L        + +   
Sbjct: 120 SLGSFVAQSGVFKTGGLIIDDDAKEVKIDDKPVKLTPVEYKILKFLCENAGKVFSIDQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I ++R+K+        Y++ VWG GY + +
Sbjct: 180 EQVWNEPSFSPENTVAVHIRRIREKIEINPKDPKYLKVVWGIGYKIEK 227


>gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33]
 gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G        +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYRGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|224500673|ref|ZP_03669022.1| hypothetical protein LmonF1_13771 [Listeria monocytogenes Finland
           1988]
          Length = 228

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     ++D  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  Q   +  LT KE+ ++  L        ++E  
Sbjct: 120 SATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMKHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTVWGVGYKFDET 227


>gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 225

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDD  L   +   L+   + V     GEDG  +     +D ++LDLGL  + G 
Sbjct: 1   MRALVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGLPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV G  +GADDY++KPF+ EEL+AR+RA+ RR+ 
Sbjct: 61  TVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + I  G LS++     V + G  + +T  E++M+  L+  ++  +++   + H+YD
Sbjct: 121 GHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VF+ +LRKK+         IETV G GY L +  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGTD-----RIETVRGLGYRLVDPV 220


>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
 gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
          Length = 232

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   I + L+   +        +D   L      + I+LD  L    G E
Sbjct: 7   KILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGLE 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R L+    +   P+ +L+     ++KV GL++GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 67  FARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRRT 126

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++     V      + +   EY++++     +    ++   L+ +
Sbjct: 127 TPQGIEDPIEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G    E + +DV I +LRK L +       I+TV G GY     A
Sbjct: 187 WGGNVYVEERTVDVHIRRLRKALGSNYEH--LIQTVRGTGYRFSTKA 231


>gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 127/224 (56%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIED   L   I   L  E   + V   G  G+E+   Y+FD I+LD+ L  + G +
Sbjct: 5   KVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R       + +L+ + S E+ V GL+SGADDY+ KPF  EELVAR+R ++RRS  
Sbjct: 65  VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSK 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     I   DL +N+ +KTV   G  ++LT  EY+++E L    N  L++   L +++
Sbjct: 125 QAAVTDRISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D        ++DV+I  LRKK+ N  GG   I TV+G GY+L+E
Sbjct: 185 DIDFNLGTNVVDVYINYLRKKIDNVNGG-RLIHTVFGMGYILKE 227


>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V  +  GE+ +   +  +FD I++D+ +  I GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ +R    + P+  L+   + +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + LI   DL +NL   T+      I LT KE+ ++ LL+  K            
Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KL++      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 229

 Score =  265 bits (680), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+A+   + L L+ +   V     GEDG+EL + +  DA+ILDL L  +PG E
Sbjct: 3   RVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ + +      D V GL++GADDY+ KP     L ARIRA++RR  G
Sbjct: 63  VCRRIRAHH-QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGG 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                        GDL ++    TV  QG  + L   E +++  LS       +++  L 
Sbjct: 122 APDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +++D  + +LR K+   AG   Y+ TV G GY  
Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGYRF 226


>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 232

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+ A+    EL+LK E F V   + G  GI     +  D ++LDL L D  G++
Sbjct: 3   KILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + + V + + PV ++S      DKV GL+ GA+DYI+KPF+  EL+ARI+ ++RR   
Sbjct: 63  LCKEI-VKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +      + +V G+L +N D K V+  G +I LT KEY ++E L  R     T++  L
Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      + + +D+ I +LRKK+   +    Y++T++G GY L
Sbjct: 182 EIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227


>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKLSIKTIRGLGYRLE 225


>gi|238650537|ref|YP_002916389.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
 gi|238624635|gb|ACR47341.1| transcriptional activator protein czcR [Rickettsia peacockii str.
           Rustic]
          Length = 237

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  KILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLVLRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 222

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA  ++  L  E F V V   G DG+ +     +D I+LD+ L  + G+
Sbjct: 1   MRVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A+  TP+ +L+    + D+   L +GADD++SKPF+   L+AR+RA++RR  
Sbjct: 61  TVCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL+V+            I LT KE+ ++  L+ R    ++K   L   +D
Sbjct: 121 RARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V+I  LR+K+ ++  G++ + TV G GY L 
Sbjct: 181 FSYDGDPNIVEVYISALRRKI-DSPFGRSSLVTVRGAGYRLE 221


>gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
 gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 254

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  +++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 254


>gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 237

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E +LK E FN VY     ++G+      + + +ILD+ L D  G+
Sbjct: 4   KILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDGDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R +K + P+  LS  +   DK+ G   G DDYI+KPF+ +E+  R++A +RR  
Sbjct: 64  EICKDIR-SKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       + +I  G   +N     +   G  I LT KE +++ LL+  +N  ++K
Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   + ++          I V I KLR+K+ + +    YI TV G GY L
Sbjct: 183 EKLWDKVWGEDYFGFDNTIMVHIRKLREKIEDDSSNPKYILTVRGLGYKL 232


>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
          Length = 231

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 269

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  
Sbjct: 44  RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGLA 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 163

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 164 ADRRSDSVLVVGDLTLDEDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      +  +++++I  LR+K+   AG +  I T  G GY+++  A
Sbjct: 224 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKPAA 268


>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+ E F V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S I  G+L+++  +  V + G  + L+ +E+ ++  L  R    L+K      +Y 
Sbjct: 121 GRSESTIRHGNLTLDPASHQVTLDGAPVALSAREFALLAALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL     G   I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKL-----GAELIRNVRGLGYMIAKEA 220


>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
           [Prosthecochloris aestuarii DSM 271]
 gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
           [Prosthecochloris aestuarii DSM 271]
          Length = 236

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  LA  ++  L+   +       GE+ ++L K   +D ++LD+ L  + GFEV
Sbjct: 6   ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  +     P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +   Q ++    L V++    V ++G  + LT  E++++ +L  R+    ++E  L+ 
Sbjct: 126 RGKREIQEVMTCDGLEVDISRHRVSLEGRELTLTLMEFKLLVVLLKRRGQAQSRETLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D       + ID  I +LR+KL         I+TV G GY L    +
Sbjct: 186 VWDVDKSINTRTIDTHITRLREKLGQTG---RLIKTVRGLGYKLEAPGE 231


>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 238

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ ++  +   L+ +   V ++  G D +   +    D ++LDL +  + G EV
Sbjct: 11  VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLDGIEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+ +    D+V GL+ GADDY++KPF+  ELV RIR+++RR+   
Sbjct: 71  CRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAPQ 130

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GDL+ + D +  E  G  + LT +E+ ++  L        ++   L+ ++
Sbjct: 131 DRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             R   +   + V + +LR+K+ +       I TVWG GY    +A
Sbjct: 191 GWRF-GDQSTVTVHVRRLREKIEDRPAQPRRIVTVWGVGYRYEPSA 235


>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 244

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G+D +       +   +ILDL + ++ G
Sbjct: 16  MKILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMDG 75

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+R+++RRS
Sbjct: 76  MEVIKRIRKDS-SIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRS 134

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            G        ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 135 EGQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDI 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A GG+  IETVWG GY +  +
Sbjct: 195 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVEAH 244


>gi|239502107|ref|ZP_04661417.1| transcriptional activator protein CusR [Acinetobacter baumannii
           AB900]
 gi|260549020|ref|ZP_05823241.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|294648943|ref|ZP_06726393.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|193078364|gb|ABO13342.2| Heavy metal response regulator [Acinetobacter baumannii ATCC 17978]
 gi|260407748|gb|EEX01220.1| heavy metal response regulator [Acinetobacter sp. RUH2624]
 gi|292825159|gb|EFF83912.1| two component response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 227

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  S P+  LS    I+D+V+GL+ GADDY+ KPF   EL+ARI++++RR +
Sbjct: 61  NIINDIRKSGKSMPILFLSARDQIDDRVKGLELGADDYLVKPFAFAELLARIKSLLRRGQ 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  I   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 QKEDSNLITIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I+ + G GYVL 
Sbjct: 181 DMNFDSDTNVVEVAIKRLRNKIDSNF-TPKLIQNIRGMGYVLE 222


>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 871

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD+ALA +IE +L S ++ + +   G +G  + + + +D I++D  L  + G ++ + L
Sbjct: 2   EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R    STP+ +L+   +  D+V GL +GADDY+ KPF  EEL+ARIRA++RRS G    +
Sbjct: 62  RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  GDL ++  +  V      I LT KEY ++EL         + +  L+ ++   D P 
Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           V  +   I  LR+KL    G  + I TV+G GY LR  A  +  
Sbjct: 182 VASVRTHIKGLRQKLRQV-GLSDVISTVYGLGYRLRTAAPPKAT 224



 Score =  109 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD ++   ++ +L+   F + +        +  +  E D ++LD+ +  + GF++
Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R        P+  +S  +  +        GADDYI KP    ELVAR+   + RSR
Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690

Query: 121 GH 122
             
Sbjct: 691 DR 692



 Score = 39.8 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 54  LT--DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           L   D   F++L  LR A+ S PV +L+  +S E++VR  + G    +  P +  E++  
Sbjct: 497 LPASDSDEFKLLAELRAAQSSLPVIVLAAEASFENRVRVARLGVSRLLQAPTSPAEILET 556

Query: 112 IRAIVRRSRGHAQSLIVTGD 131
              I+++      +L+V  D
Sbjct: 557 AVRILQKRTPPTATLLVVDD 576


>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
 gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
          Length = 223

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G  G+E      +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R  K   PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  EILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I    +  + + + V +Q   + LT +EY+++EL  L K+  L + +    LY 
Sbjct: 121 GQSNPIIEHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR+KL     GK++I TV G GY L +N +
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKHFIRTVHGVGYTLGKNDE 221


>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 226

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  +NF V     GE+ +++  K  +   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R +R      P+ +L+      D++ G + G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  EVCREIR-KNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +   ++  G + ++  A    V    + L+ KE++++      +   L++E  LN ++
Sbjct: 124 QSNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR K+ +      YI+TVWG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG---EYIKTVWGMGYKFE 223


>gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 235

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 124/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           ++IL++EDDK ++  I  +L+ E + +     G + ++   F  EF  I+LDL +  + G
Sbjct: 7   IKILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE++R +R  K + P+ ++S  ++  DK+  +  GADDYI KPF+  E V RI+A++RR 
Sbjct: 67  FEIIRRVRQ-KSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRY 125

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +S I   DL V+++A T+      I +T  E+++++L  L  N   TK  
Sbjct: 126 IYFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++          + V I +LR K+ + A    YI TVWG GY L E
Sbjct: 186 IYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKLGE 235


>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
          Length = 223

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+K +   ++L L  + ++    + G   I+  +  + D ++LD+ + ++ G+E 
Sbjct: 4   ILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPELDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDYI+KPF++ EL+ARI A++RRS G 
Sbjct: 64  CKRIREFS-NVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVGK 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S +    L  + D   V  Q   I LT KE+ ++ L     N   ++E  +  L+   
Sbjct: 123 -HSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWGYN 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
              E + ID  +  +R+KL  A      +++TVWG GY   
Sbjct: 182 ANTEERTIDSHVKNIREKLRQAGFPIDQFLQTVWGVGYKWE 222


>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
 gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Candidatus Pelagibacter sp. HTCC7211]
          Length = 227

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            + + ED+ ++   ++  L+ E   V   + GE+ ++  K  + D I++D  L D+ G +
Sbjct: 4   HVFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLSGVD 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + L+  K     P+ +L+     EDK++   +GADDY++KPF+++EL ARI++++RRS
Sbjct: 64  ICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRS 123

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  +   ++   DL ++   K V      I L   E+++++          ++E  LN++
Sbjct: 124 KPQSSVDVVEFTDLKIDRITKRVYRNNTEISLGPTEFKLLDFFIKNPKRVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E + +DV I +LR+ + N    K  I TV   GY L 
Sbjct: 184 WGENIYVESRTVDVHIRRLRQAI-NIENTKPLIRTVRSAGYSLE 226


>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
           protein TCRA [Mycobacterium bovis AF2122/97]
 gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
           PROTEIN TCRA [Mycobacterium bovis AF2122/97]
 gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
           protein tcrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
          Length = 253

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 24  RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 84  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246


>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
          Length = 245

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I+  L ++ +   V   G + +E  +   +D I LD+ +  + GF+
Sbjct: 20  RILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R  K   P+ I++     +D V+  + GAD+YI+KPF   E VAR+ AI+RR   
Sbjct: 80  ACERIRA-KSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDM 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  G+L ++  A  V V+G  + LT  E++++  L+       T+E+    
Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E  ++DV + +LR+K+         I TV G GY L 
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243


>gi|30261228|ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47526390|ref|YP_017739.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184060|ref|YP_027312.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65318498|ref|ZP_00391457.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165871824|ref|ZP_02216467.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635393|ref|ZP_02393707.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640233|ref|ZP_02398499.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688103|ref|ZP_02879315.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707629|ref|ZP_02898081.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654173|ref|ZP_02936146.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566754|ref|ZP_03019671.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816035|ref|YP_002816044.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229603977|ref|YP_002865651.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254682711|ref|ZP_05146572.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254734129|ref|ZP_05191842.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740227|ref|ZP_05197919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753567|ref|ZP_05205603.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254758664|ref|ZP_05210691.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254842|gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501538|gb|AAT30214.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177987|gb|AAT53363.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712401|gb|EDR17935.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511834|gb|EDR87214.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529221|gb|EDR91974.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170127404|gb|EDS96279.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667998|gb|EDT18749.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172080880|gb|EDT65960.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562306|gb|EDV16274.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006114|gb|ACP15857.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229268385|gb|ACQ50022.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 234

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E  + L +  ++D IILD+ L    GF+
Sbjct: 6   ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  +S  DK+ G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                         G   ++  +  + V G  +  + + +Q++       N   +KE   
Sbjct: 125 QVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++      +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231


>gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976]
 gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976]
          Length = 221

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G +     ++DA++LDL L  + G 
Sbjct: 1   MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFDALFSTQYDAVVLDLSLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++D++ G  SGADDY+ KPF   E+V R++A+VRR  
Sbjct: 61  DILKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S IV G L ++ +  +  +  + I LT KE+Q+++L    K+  LT+      LY 
Sbjct: 121 QQSSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     ++V+I  LRKKL     GK++I+TV G GY L
Sbjct: 181 WDNDVGSNTLEVYIHNLRKKL-----GKSWIKTVHGVGYRL 216


>gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 230

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   +    +       GE+G  L +   +DAIILDLGL  I G 
Sbjct: 1   MRILVVEDDVDLSRQLVAAMTDAGYAADAAFDGEEGAWLGETEPYDAIILDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R A I TPV IL+      +KV G+ +GADDY++KPF  EE++ARIRA++RRS 
Sbjct: 61  SILERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++ +  GDL ++     V  +G  + LTG E++++  L   ++  +++   ++HLY 
Sbjct: 121 GVAKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              E +   I+VFI +LR+K+         I TV G GY L      E  
Sbjct: 181 QDFERDSNTIEVFIGRLRRKIPAD-----IIHTVRGLGYCLSAAVDPEGS 225


>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
 gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
          Length = 231

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ + +    +    ILD+ L  I GFE
Sbjct: 4   KILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLPGISGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ R+++++RR   
Sbjct: 64  VCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRRVNL 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S       +  G  ++++ +KT       I +T  E+ ++E     K   +T++  
Sbjct: 124 NPTGSSNDDVKSLKDGPFTLDIYSKTFFKGDKEIDVTPTEFTILEYFIKNKGKAMTRDEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+        +IETVWG GY  +
Sbjct: 184 MKETWGDNYSNDTKIVDVNIRRIRAKIEENPAKPEFIETVWGTGYRWK 231


>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
 gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
          Length = 249

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 11/238 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++      D I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   +  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTKEQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A+   +I   DL +N D+  V   G  I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 AEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGKN----YIETVWGRGYVLRENAKDET 229
                +  I++ +I  LRKK+      +  G +      I+T  G GY++R   +  T
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMIRAPREQAT 246


>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     GE  +       +D ++LDLGL    G 
Sbjct: 6   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGV 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R    + PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 66  EVLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 126 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + A
Sbjct: 186 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 225


>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
 gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
          Length = 233

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++A   +  L+   F V     GE G++      +D +ILDL L    GF 
Sbjct: 6   KILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDGFS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 66  ITQEVRSKK-DIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +I    L ++  A+ V V G  +  T +E+ ++  L+   N   TKE   
Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I KLR+K+    A    YIET+WG GY  +
Sbjct: 185 QEIWKMESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRFK 232


>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
           bacterium 1_7_47FAA]
          Length = 234

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   +E +L+ E F V      G D +++C+ ++ D I+LD+ L DI G 
Sbjct: 4   KILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIMLPDIDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R     + +  LS  +   DK+ GL  G DDY++KPF+  E+V RI+A +RR +
Sbjct: 64  EVCRQIRQFSYCS-ILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122

Query: 121 GHAQSLIV------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S +        G L ++ ++      G  I LTG+EY ++  L    +  ++KE  
Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          I V I  LR+K+ +       + TV G GY L++
Sbjct: 183 YEQVWGEYSSICDNTIMVHIRHLREKIEDLPSQPQQLITVKGLGYKLKK 231


>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
          Length = 226

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +   L+ E F+V     GE  ++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIRE-HLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    + V+   +        + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMF 224


>gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 251

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 27  MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 147 TPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251


>gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 219

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD+ L   +   L+   + V     GE+G  L     +DA+ILDLGL  + G  VL
Sbjct: 2   LIVEDDRDLNRQLCEALEDAGYVVDKAYDGEEGHFLGDTEPYDAVILDLGLPQMDGLSVL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
              R    S PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA+VRR+ G A
Sbjct: 62  ERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGLA 121

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + I  GD+ ++  A  V   G  + LT  E++++  L   K   +++   + HLYD   
Sbjct: 122 SNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQDF 181

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +   I+VF+ +LRKK      G + IETV G GY L+E 
Sbjct: 182 DRDSNTIEVFVGRLRKKF-----GSSLIETVRGLGYRLQEE 217


>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
 gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
           protein [Paulinella chromatophora]
          Length = 268

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   +   L+   + V   + GE+ + +    + D I+LD+ L  + GF V
Sbjct: 26  VLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 86  CRRLRAESC-VPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V   G+RI LT  E+ ++ELL       + +
Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
 gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
          Length = 254

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
 gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
 gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD A+   ++L L+ +   V+  + GE GIE+   +  D ++LDL L  + GFE 
Sbjct: 4   VLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMDGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R A    P+ +L+  +   D V GL++GADDY++KP     L ARIRA++RR+   
Sbjct: 64  CRRMRAAGP-VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G A +    GDL ++  A  V  +G  + LT  E +++  LS       +++  L+ 
Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D     + +++D  + +LR K+ +      +++TV G GY  
Sbjct: 183 VWDHDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGYRF 226


>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
           DSM 44702]
          Length = 244

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  I+  L+ ++F+V   + G   +E+ K ++ DA ILD+ +  + GF 
Sbjct: 19  RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR A    PV  L+   +++D++ GL  GADDY++KPF  EE++ R+R I+RR + 
Sbjct: 79  VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQP 138

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +SLI   DL+++ D   V   G  + L+  E++++  L +     ++K   L+ +
Sbjct: 139 EEKEDESLITYADLTLSDDMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     +  +++ ++  LR+K+       + I TV G GYVLR
Sbjct: 199 WEYDFGGDGNVVESYVSYLRRKI--DTQEPHLIHTVRGVGYVLR 240


>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
          Length = 246

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++ +    D I++D+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 69  TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 129 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS------NAAGGKN---YIETVWGRGYVLR 222
                +  I++ +I  LRKK+            K     IET  G GY++R
Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 239


>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
 gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
           [Aminobacterium colombiense DSM 12261]
          Length = 232

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 128/223 (57%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   +   LK   +       G+  ++L      D IILDL L  + G+E
Sbjct: 5   RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+  K +   P+ +L+      D V GL+ GADDY+ KPF+  ELVAR+  ++RR+
Sbjct: 65  VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRT 124

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   ++  I  GDL ++++ + V ++G+ + L+  E++++ELL+ R   T++++  L  +
Sbjct: 125 RMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     + + +DV I +LRKKL +       I+T+ GRGY +
Sbjct: 185 WNL-YGGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRI 226


>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
           diphtheriae NCTC 13129]
 gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
           diphtheriae]
          Length = 240

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V+   + LT  E++++  L+LR    LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY + + 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRMGQP 240


>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
 gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
          Length = 334

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/218 (33%), Positives = 120/218 (55%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++++ED+ A+A  + L L  + + V+V   G  G++  +      ++LD+GL  I G EV
Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR A   TPV  ++      D+V GLQ GADDY++KPF+  ELVAR+ A++RRS G 
Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRSTGV 231

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++V G + V+  ++ V V+   + LT  E+ ++  L  R    L +E  L  ++  
Sbjct: 232 TGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQLLADVWGE 291

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + +DV + ++R KL +A+     I T  G GY
Sbjct: 292 ADYSGSRTVDVHVAQVRAKLGDAS----PIRTHRGVGY 325


>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
          Length = 231

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPILVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 230


>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 676

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+++A  +  +L  E++ V V   G  G +L   + +D IILD+ L ++ G 
Sbjct: 1   MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR  + + PV  ++ +    +K+ GL +GADDYI+KPF  EEL+AR+RA++RR +
Sbjct: 61  KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +    L + ++++ +  + +++ LT KE+ M+EL         ++E  +++L+
Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P  + +   +  LR+KL       + IETV+G GY L+ 
Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKP 224



 Score = 84.5 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD  L  +++  L  EN+ +   D   +  +  +    D ++LD+ +    G E
Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R   A    P+   +  +    +    ++G D+ I K  +  +L+A +   ++RS
Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659

Query: 120 R 120
            
Sbjct: 660 Y 660


>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
 gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +IE+ L  +   V     G + +E+ K    D +I+D+ +  + G  
Sbjct: 3   KILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIMMPRMDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR   
Sbjct: 63  ATLKIREKH-NIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRRYMQ 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   ++++   G L++N D K V V G  + LT  EY ++ LL   +    + +  
Sbjct: 122 LGSTAIKESEAIYTVGGLAINDDLKEVTVDGEPVKLTPIEYNILLLLVKHQGKVFSIDQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 182 YENIWNENAVGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 231


>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
 gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. Spyr1]
          Length = 250

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F V V   G D I + +  + D +ILD+GL  I G E
Sbjct: 18  RALVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 78  VCRQLRTFSDAY-IVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRV 136

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LS+N+ A+ V + G +I LT  E+ ++E LS R    L++
Sbjct: 137 LQSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLSR 196

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + DG       ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 197 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 246


>gi|299822847|ref|ZP_07054733.1| response regulator [Listeria grayi DSM 20601]
 gi|299816376|gb|EFI83614.1| response regulator [Listeria grayi DSM 20601]
          Length = 230

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   +EL    E         G++G++     +++ +I+DL L  + G 
Sbjct: 1   MKLLMIEDNHSVCEMMELFFMKETITATFIHDGQEGLDRFLEEDWEFVIIDLMLPSLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R A    P+ IL+   S  D+V GL+ GADDY+ KPF+   L+ARI+A+ RR  
Sbjct: 61  TICKKIREAS-DVPIIILTAKESESDQVLGLEMGADDYVIKPFSPITLLARIKAVKRRHH 119

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   S+I T D  V+L  + V   G  +  LT KE+ ++           ++E  L
Sbjct: 120 KVEGSQPSSIIRTKDFVVDLQTREVLHLGKPLGALTPKEFDLLYFFLQHPRQVFSREQLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++  +   + + +DV I +LR+K++N    ++Y+ T+WG GY   E A D+
Sbjct: 180 EQVWGYQFYGDERTVDVHIKRLRQKIAN--QKQHYLFTIWGVGYKFEEVADDQ 230


>gi|184154873|ref|YP_001843213.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260663097|ref|ZP_05863989.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183226217|dbj|BAG26733.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|260552289|gb|EEX25340.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 240

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M+IL+IED++++   + +  K E ++      GE+ +E    +  +++ ++LDL L    
Sbjct: 1   MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 120

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                      +  ++  I T    +N   +   + G+ I +LT KE+ +++ L+ +   
Sbjct: 121 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++  D
Sbjct: 181 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 238

Query: 228 E 228
           +
Sbjct: 239 D 239


>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
 gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
          Length = 231

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230


>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 247

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +LA  + + L+ E + V     G   +   + +  DA+ILD+ L D+ G  
Sbjct: 23  RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L  +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 83  LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 142

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 143 ALARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG    I T  G GY+++ 
Sbjct: 203 WSYDFGGQANVVELYISYLRRKI--DAGRAPMIHTRRGAGYLIKP 245


>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
 gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
          Length = 229

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +A  I L L+++ + V+    GE+ +   +  + D  +LD+ L DI GF
Sbjct: 1   MNILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R  K + PV +L+      DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  EILKRIRE-KYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +         +I    + +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEEL 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++           + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FRKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 229


>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
 gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
           str. Eklund]
          Length = 222

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ +   +        F+V   + G   +++ K    D +ILD+ +  + G+
Sbjct: 1   MKILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPYLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V +++R      P+ +L+     EDK+ G + GADDY++KPF+ + LVA+++A+++RS 
Sbjct: 61  TVCKSIRQ-NSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSV 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++     L +N  +  V++ G  ++L+ KEY ++   +   +  L++++ L+ +
Sbjct: 120 VEQKETNIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E  ++ +D  + +LR+KL   A    +I TV G+GY    +
Sbjct: 180 WGFDYEGGLRTVDTHVKRLREKLKEKA---KFIVTVRGKGYKFEVD 222


>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 248

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 83  QVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVQGMGYRLQ 241


>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
           sphaeroides f. sp. denitrificans]
          Length = 230

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 189 GRDIYVDSRTVDVHVGRLRKAL-CLHGGEDPVRTVRGAGYAL 229


>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
           bacterium HTCC2654]
          Length = 229

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L SE ++V + + G+D + L +    D I+LD  L  + G E+
Sbjct: 8   VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +  R      PV +LS  S   D+VRGL++GADDY+ KPF+ +EL+ARIR  +RR+R
Sbjct: 68  CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRTR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   D+ ++ +   V   G  I L   E++++     +     ++E  L+ ++
Sbjct: 128 PASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L    GG + + TV G GY L
Sbjct: 188 GRDVYVDTRTVDVHVGRLRKALCK-TGGDDPLRTVRGTGYAL 228


>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 255

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ +    +   L  E +  +    GE+  EL +  EFD ++LDL L  I G  
Sbjct: 23  RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISGTT 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +   +   P+ +++  S+  D + GL+ GADDY++KP++  EL+ARI A++RRS  
Sbjct: 83  LCRRMHELR-RVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 141

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G     +  G + +++ +  V + G       KE++++E L   K   LT++ 
Sbjct: 142 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 201

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  ++      + K +DV + ++R K+         + TV G GY +
Sbjct: 202 LIGRVWGSDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 249


>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
 gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
           RM3268]
          Length = 220

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/220 (39%), Positives = 128/220 (58%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+K L   I   LK + ++V     G++ +E     ++DAI+LD  +  + GF
Sbjct: 1   MKILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+A R   + TPV  L+   + ED + GL  GADDY+ KPF+  EL+AR+RAI+RR  
Sbjct: 61  EFLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I+   + +NL  K+V   G  + LTGKEY+++ELL L +   L++E     ++D
Sbjct: 121 ATADNEIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             DE    +IDV I  +RKKL       + IET  G GYV
Sbjct: 181 FSDEASSNVIDVLIKNIRKKLGEHG---DIIETKRGLGYV 217


>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
 gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +I + L  E + ++    G   +E+ +      +I+D+ +  + G 
Sbjct: 1   MNILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIMMPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
             L  +R  + + PV +LS  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR  
Sbjct: 61  RALMKIREER-NIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYV 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++  +G L ++ ++K V V G  + LT  +Y++++LL+       + +   
Sbjct: 120 TLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++++         + V I K+R+K+        Y++ VWG GY + +
Sbjct: 180 ENVWNEAAFSAENTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKIEK 227


>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 235

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   IE+ L +E +N+ +   G + +E  K  + D IILD+ +  + G   
Sbjct: 10  ILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIMMPKLDGIRT 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +LS  S   DK+ GL  GADDYI KPFN  ELVAR+++ +RR    
Sbjct: 70  CIKIREDK-KMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTSF 128

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++        I    L +N   + V V+   I LT +E+ ++E+L++ +   L+ E    
Sbjct: 129 SEAKEINDEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIYE 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I  +R+K+        YI+ VWG GY + +
Sbjct: 189 KVWNEPFYNSENTVAVHIRNIREKIEINPKDPKYIKLVWGVGYKIEK 235


>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  265 bits (679), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVITGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 227

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V     G  G       ++D IILD+ L    G+
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFTVDWVADGVTGQHRALTEDYDLIILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    ST V +L+    ++DKVRGL+ G DDY+ KPF+  EL+AR+R+I+RR +
Sbjct: 61  TVLKNLRRTH-STSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ +       I TV G GYVL E  
Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDN-YEPRLIHTVRGMGYVLEERG 223


>gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 226

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+      +   L    + V     G  G    +  ++D +ILD+ L    G+
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  +  TPV  L+    + D+V+GL+ GADDY++KPF+  EL+AR+R+I+RR +
Sbjct: 61  TLLQNLRRKRC-TPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L  +    Q   I LT KE+ ++ LL  ++   L +    + ++D
Sbjct: 120 PREFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKI-DDAYEPKLIHTVRGMGYVLE 220


>gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis
           z3032]
 gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter
           turicensis z3032]
          Length = 226

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 131/229 (57%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+      +E  L+     V     G DG+ L   +++  IILD+ L  + G+
Sbjct: 1   MKLLLIEDNDKTRAWLEKGLREAGLVVDAVADGRDGLHLALEHDYALIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR AK +TPV  L+   ++ D+V+GL+ GADDY+ KPF+  EL+AR+RA +RR  
Sbjct: 61  QVLRALRTAK-ATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + +   DL+++         G RI LT +E+ ++ LL+ R    L + +  + ++ 
Sbjct: 120 PAAAT-LQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E  ++DV I +LRKK+ +       IETV G GY L  NA +++
Sbjct: 179 INFDSETNVVDVAIRRLRKKI-DDPFPLKLIETVRGMGYRL--NAPEQS 224


>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
 gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
           DSM 5476]
          Length = 244

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ ED+  L + +   LKSE ++V   + GED ++      F  ++LD+ +    G 
Sbjct: 24  IKILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R      P+ +L+  ++  D++ G Q GAD+YISKPF+ + LV R+++I++R+ 
Sbjct: 84  EVCAEIRKLS-DVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAG 142

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G+L ++    +V V   RI LT +EY ++  L   KN  L +E  L  ++ 
Sbjct: 143 LLQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWG 202

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +++ +D  I  LR K+    G + YI+T+   GY   
Sbjct: 203 MDYEGDIRTVDTHIKCLRIKI---PGAQEYIKTIRKIGYKFE 241


>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 235

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 7   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  +  G  I   L   E++++           ++   L
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 187 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 235


>gi|227514441|ref|ZP_03944490.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087191|gb|EEI22503.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 250

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M+IL+IED++++   + +  K E ++      GE+ +E    +  +++ ++LDL L    
Sbjct: 11  MKILMIEDNRSVCEMMSMFFKKEKWDATFAYDGEEAVEKFAAEADDWEMVLLDLNLPKKD 70

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 71  GMQVAADIRRISPTVPIIILTARDSESDQVLGLEMGADDYVTKPFSPLTLIARIKALRRR 130

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                      +  ++  I T    +N   +   + G+ I +LT KE+ +++ L+ +   
Sbjct: 131 VQLSGIANKAEQVTSEFDIQTSHFKLNSKTREAYLNGNLISNLTPKEFDLLKTLASKPKQ 190

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             T+E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   ++  D
Sbjct: 191 VFTREQLLQLVWDYEFYGDERTVDAHIKKLRQKIEKV--GPKVIQTVWGVGYKFDDSEAD 248

Query: 228 E 228
           +
Sbjct: 249 D 249


>gi|225020670|ref|ZP_03709862.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305679950|ref|ZP_07402760.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
 gi|224946616|gb|EEG27825.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305660570|gb|EFM50067.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 228

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD A++  + L+L +E F   V + G   +E+ +    D ++LDL L  + G +
Sbjct: 8   KVLVVDDDPAISEMLTLVLSTEGFASVVVNDGGQAVEVFQRENPDLVLLDLMLPGMNGID 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    + P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RRS  
Sbjct: 68  ICRAIRQES-TVPIVMLTAKTDTVDVVLGLESGADDYIPKPFKPKELVARVRARLRRSDE 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   +  GDL +++   +V   G  I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 127 SSTDSMEVGDLLIDVPGHSVSRDGEEISLTPLEFDLLHELASKPGQVFTREELLQRVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+         + TV G GY 
Sbjct: 187 RNASDTRLVNVHVQRLRAKIEKDPEKPQIVLTVRGVGYK 225


>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 256

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ AL  ++E  L  E + V     G + +   +    D ++LD+ +  + G  
Sbjct: 18  RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGLT 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116
            +R +R    + PV +L+   ++ D+V GL  GADDY++KPF  +EL+AR+RA++     
Sbjct: 78  AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALLRRNAL 137

Query: 117 -------RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                    +      ++   DL +N   + V   GH I LT  E+ ++E+        L
Sbjct: 138 AAEAAARTAADEDGGEVLSFADLRMNTATREVTRGGHTIELTRTEFMLLEMFLSHPRQVL 197

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           T+E  L  ++    EP    +DV++  LR+K     G    I+TV G GY
Sbjct: 198 TREQILKAVWGFDFEPSSNSLDVYVMYLRRKTEQH-GMPRIIQTVRGVGY 246


>gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 224

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIRALLRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  GDL++N+  + V   G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +EP    ++V I  LR K+     GK+ I TV G GY+L   A +E+
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATATEES 224


>gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
 gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803]
          Length = 229

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLEK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R K+      K+YIET+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227


>gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
 gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like)
           [Caminibacter mediatlanticus TB-2]
          Length = 222

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 143/224 (63%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDDK LA  IE  LK +NF V V + GE+G+ L +  ++D +I+D  L  + G 
Sbjct: 1   MKVLLVEDDKKLAKIIEKGLKRQNFRVDVAEDGEEGLYLARNNKYDVMIIDWMLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ LR   I+TP  IL+  S ++DKV GL   ADDY++KPF  EEL+AR++A+ RR++
Sbjct: 61  DLIKTLRKEDINTPTLILTAKSDLDDKVEGLSV-ADDYLTKPFEFEELIARLKALFRRNK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  GDL +NLD K V+  G  I LT K++++++LL + KN  +T EM   +L++
Sbjct: 120 KLPENIIKVGDLEMNLDTKEVKRAGKPIELTAKQFELLKLLMINKNKIVTPEMIEENLWE 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E +  +I   I  LRKK+ +    K  ++T+ G GY + + 
Sbjct: 180 MNEERDSNVITAHISYLRKKI-DKGFDKELLKTIRGMGYKISDE 222


>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 227

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I    K E F       G + +ELC+   +D +++D+ +  + GF 
Sbjct: 3   KILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIMMPHLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ ++  K   P  +LS +    D++ G   G DDY+ KPF+ +EL+ RI AI++R   
Sbjct: 63  AVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVHP 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +        + ++  A+TV ++G RI L+ KEY+++  L       LT+E  L ++
Sbjct: 123 VEAVSSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I  LRK L + A    YI T+ G GY   +
Sbjct: 183 WGYDFFGDDRTLDTHIKLLRKNLGDYA---KYIITLRGVGYRFEK 224


>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225


>gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 235

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   + L L+ +   +Y    G +  E+    + D  I+D+ +  I G+ +
Sbjct: 4   ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFEIISNNKVDIAIIDIMMPKIDGYHL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           ++ +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  E+VAR+ A +RR    
Sbjct: 64  IKKIRE-KYDIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRRYNKL 122

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +S +  G+L +N++  T+      ++LT  EY++I  L   K    TK+
Sbjct: 123 KKNTYVNLKEKKSYLECGNLRLNINTCTLYKDNVEVYLTSTEYKIISYLLENKGRVFTKK 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++++     +   I V I  LR K+ + +    YI+T+ G GY L  N
Sbjct: 183 QIFEYVWEEPFYGDDNAIMVHISNLRDKVEDDSKNPKYIKTIRGLGYKLDAN 234


>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
          Length = 237

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSEN-FNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR IL ++DD+ + H I    + E+ F V     GE+ +++      D +ILD+ L  + 
Sbjct: 12  MRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGLD 71

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR- 117
           G E  R +R    + P+ +LS      DKV GL+ GADDY++KPF+  EL+AR++A  R 
Sbjct: 72  GMETCRRIRQQH-TVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRR 130

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             R +        +G LS+N     V + G ++ L+ KE+Q++  L+   N  L++E   
Sbjct: 131 VERMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLY 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      ++  + V I  +RKKL         I+T+WG GY     +++
Sbjct: 191 QKIWGQEF-GDLNTVTVHIKNIRKKLGRD-----CIKTIWGVGYKFAWESEE 236


>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
           103S]
 gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
           103S]
          Length = 224

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF +L
Sbjct: 2   LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGML 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
           R LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR   S 
Sbjct: 62  RRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGHSD 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ D + V   G  + L+  E+ ++    +   T L+K   L+H+++
Sbjct: 122 DKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                EV +++ ++  LR+K+         I T+ G GYV+RE 
Sbjct: 182 YDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 223


>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 219

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+ V 
Sbjct: 1   MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--RG 121
            ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARI+A++RR     
Sbjct: 61  AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGVGA 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  + V GDL V+  A+ V +    I LT KE+ ++E L LR    ++K   L H++D 
Sbjct: 121 GASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWDF 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E +  I++V++  LR+KL         I TV G GY L  + 
Sbjct: 181 AYEGDPNIVEVYVSTLRRKLRAG-----LIRTVRGAGYRLEASP 219


>gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
 gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus lacrimalis 315-B]
          Length = 229

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +   +++ L+ E + V+    GE+GI++ +  +   ++LD+ L  + GF 
Sbjct: 4   KILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    +  + +L+  +   DK+ GLQ G DDY++KPFN  EL  RI+++ RR   
Sbjct: 64  VCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLEP 123

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ I+     ++   +        I LT  EYQ++++        + ++  L  +
Sbjct: 124 EEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKIV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + KI+DV I +LR K+        YIETVWG GY  +
Sbjct: 184 WGNDFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYRWQ 227


>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 247

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 20  KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 80  TLEEIRKE-YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 139 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 199 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247


>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 229

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + +++     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  ICQKIR-DKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +   +   I K+R K        N+I TVWG GY   +N
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227


>gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ +L+IEDD  +A      L+   + V +   G  G++      +D +++DL L    G
Sbjct: 1   MKQVLIIEDDNNIAALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLMLPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+++A+R  K   P+ I+S  +   DK+RGL  GADDY++KPF+  ELVARIR+ + R 
Sbjct: 61  YEIVKAIR-DKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMRY 119

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +       +I    + +  D+  V V G  I LT KEY+++  L+   N   TK+  
Sbjct: 120 ERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + ++      +   + V I KLRKK+   +G   YIET+WG GY  
Sbjct: 180 FSSIWGEDYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGYRF 226


>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
 gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock3-17]
          Length = 224

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V V   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGMEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+ARIR I RR +  
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++++++T+      I LT KE++++ +     N  LT+++ L  ++
Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL        YI+TV G GYV+R
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKLHGVDKE-EYIQTVRGAGYVMR 224


>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 221

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 128/223 (57%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD  +   I+L L+ E + V     G   ++  +    D ++LD+ L ++ GF 
Sbjct: 4   KVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMNGFT 63

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL  +R       PV +L+    +ED+VRGL+SGADDYI KPF+ EEL+AR+ A++RR  
Sbjct: 64  VLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR-- 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I+ G++ +NL ++ V+V G  + L+  E+ ++++L       ++K+  L  ++ 
Sbjct: 122 KGYSEKILYGNIEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     +++V+I  LRKKL +A      I+TV G GYV +E
Sbjct: 182 TEEWGNPNVVEVYINYLRKKLGSAG---KIIKTVRGVGYVAKE 221


>gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 226

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI-PG 59
           MRILL+EDD  +   ++  L+     V     G DG+ +     FD ++LD  L     G
Sbjct: 1   MRILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPGGVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++  LR     TPV  LS +  ++++V+GL++G DDY+ KPF   EL+AR+ A+ RR 
Sbjct: 61  VRLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRP 120

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A  + +   DL ++L ++TV   G +I +  +E++++E L       +T+ M L  +
Sbjct: 121 AVDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR+KL +    K  I TV   GY++R   
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKL-DKGQDKPLIHTVRNAGYMIRAEP 226


>gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
 gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM
           16795]
          Length = 227

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   ++  L+   + V  +    +G    K  + + I+LD  L +I G +
Sbjct: 4   KILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNISGID 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           VL+ +R  +    TPV +L+  +   DKV+GL+ GADDYI+KPF  +EL+ARI +++RR 
Sbjct: 64  VLKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVLRRY 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + ++   D+ ++L    V  +  +I LT KE+ +++LL   K   L++   L+
Sbjct: 124 NMTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNFLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E + +DV I  LRKK+ N   G+ YIET+ G GY +
Sbjct: 184 KVWGYEYFGETRTVDVHIRYLRKKIEND--GEKYIETIRGIGYKI 226


>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 233

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    QG  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAQGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKSA 233


>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
           [Actinomyces oris K20]
          Length = 219

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   LK+  F  + T  G   + L    +FD IILD+GL DI GFE
Sbjct: 3   RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR   +  PV +L+  SS+ D+V GL+ GADDY+ KPF+ EEL+ARIR  +R    
Sbjct: 63  VLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDAT 122

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   D+ ++L A+T+ ++G  + L+ +E+ + E         L++E  L+ ++ 
Sbjct: 123 APDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   +++V++  LR KL     G+  +ETV G GY L
Sbjct: 183 LDFDPGSNVVEVYVSYLRNKL-----GRQRVETVRGMGYRL 218


>gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
 gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato
           Max13]
 gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas syringae pv. tomato T1]
          Length = 227

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 128/228 (56%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+      ++  L    FNV     G + +       +D +ILD+ +  I G+
Sbjct: 1   MKILVAEDEPKTGMYLQQGLLEAGFNVDRVLTGTEALHQALNESYDLLILDVMMPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++++R A    PV  L+    ++D+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  DVIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + I  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + ++
Sbjct: 121 GAPNLTSIKIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V I +LR K+ +    K  I+T  G GY+L  +A D
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFDTK-LIQTSRGMGYML--DAPD 225


>gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
 gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
           29176]
          Length = 238

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +++ LKS+ + VY    G +G+++ +  E    I+D+ +  + G  
Sbjct: 11  HVLVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEEIHLAIVDIMMPRLDGIR 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   LR  K   PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 71  MTMKLRE-KYDFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYRK 129

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++ V G L +N D   V V G  + LT  EY+++ LL+       + E   
Sbjct: 130 FMERLAPRENIHVIGGLEINEDTVEVSVDGEPVRLTPIEYKILLLLAKNPGRVFSSEEIY 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++          I V +  +R+K+        Y++ VWG GY + +  
Sbjct: 190 ERVWQ-EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEKQG 238


>gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 239

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   I   L  + + V     G+   E  + +  D +ILD+ L D  G+ 
Sbjct: 5   KILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQSFSPDLVILDINLPDTLGYA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   +      T V IL+  +   DKVRG   GADDY++KPF+  EL  R+ AI+RR R 
Sbjct: 65  LCEQM-QESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRRQRS 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL+++     V V+G  ++LT  E+ ++  L+   N    +   + 
Sbjct: 124 PVAPPARDQSLDFADLNIDPMRHVVAVKGEPVNLTALEFNLLHFLAKNANKVWRRSELIQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + +++DV I ++R+KL N    +N I+TV G GY+  
Sbjct: 184 AVWGYDYLGDQRVVDVHIGQIRRKLDNLMQQENPIKTVRGVGYMFE 229


>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
 gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
           aggregata IAM 12614]
          Length = 233

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L+  +   L++E ++V     G++     +    D ++LD  L  + G E
Sbjct: 3   KVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  + +   PV +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI+RR+
Sbjct: 63  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++ +GD+ ++ +   V      IHL   E++++E L        ++E  L+ +
Sbjct: 123 SPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK L N    K+ I TV G GY   + 
Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAL-NKGKAKDPIRTVRGAGYAFNDQ 227


>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
          Length = 230

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ EEL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 225

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV + +LR+K        + I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHMNRLREKFQEEKSRFS-IKTIRGLGYRLE 222


>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis T17]
          Length = 289

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 1/215 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GF
Sbjct: 1   MRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR  
Sbjct: 61  EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D
Sbjct: 121 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
              E    I+DV+I  LR K+ +   G   +ET+ 
Sbjct: 181 AAYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIR 214


>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 231

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +IEDD+ +   +    K E F+V     G+   E  K  + D ++LDL + ++ G E 
Sbjct: 4   IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R  K     P+ +L+  S+  DK+ GL+ GADDY++KPF+  EL+AR++A++RRS+
Sbjct: 64  CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A+     GDL ++ +   V ++G  +HLT  +++++  L   +   L+++  + 
Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           H++    +   + IDV I KLR+ L       N I+T+ G GY   
Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYG---NCIKTIRGVGYKWE 226


>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  265 bits (679), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 15  VLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDGLQV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 75  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGNA 134

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +    L +++ A+        + LT  E+ ++ELL       L   
Sbjct: 135 SLDAPKEEPSPSGQVSVAGLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVLDHT 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + ++     P  K + V++  LR+KL +  G    I TV G GYVLRE+
Sbjct: 195 TIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DQPGAPALIHTVRGVGYVLRED 245


>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
 gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225


>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
 gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
           34H]
          Length = 240

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 67  ICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAVLRRRTQ 126

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A       +++I  G   +NL  + ++     + LT  E+ +++ L       L+++  
Sbjct: 127 EAPGAPALEENVISFGGYHLNLATREMQKDDISMPLTSGEFAVLKALVTHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ L        Y++TVWG GYV   + 
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMLEEDPAKPRYLQTVWGLGYVFVPDG 237


>gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 240

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 127/234 (54%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L+ E + +   + G++ I      ++D I+LDL +    G E
Sbjct: 8   KILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      ++V+G ++G DDYI KPF+  E+V R++A++RR+  
Sbjct: 68  VCRQIREKK-ATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +        + ++V   LS++ DA  V   G  + LT KEY+++  L+   +    +E 
Sbjct: 127 TSYFNANTTTKDVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
            L  ++      +++ +D  + +LR+KL+  + G    I TVWG GY     A+
Sbjct: 187 LLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEVGAE 240


>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
 gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
          Length = 228

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 68  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
 gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
           [Clostridium difficile]
          Length = 230

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DDK L + +E  LK+ENF V V   G+ G++  K   +  IILD+ L  + G++
Sbjct: 3   KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  +R    + PV +L+   S  DKV GL+ GADDY++KPF   E VAR+++++RR   
Sbjct: 63  VLTEIRKLN-NVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTV 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       +    L +++  +TV +  ++I+LT +E+ ++  L+  +    TKE    
Sbjct: 122 FNNHTEENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           H+++     + + I  F+ KLRKK+ N     +YI+T+ G GY  
Sbjct: 182 HVWNNEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGYRF 226


>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 222

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 125/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   ++  L    + V V   GED I L     +D +ILD+ +  I G 
Sbjct: 1   MKILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  K    + +LS    ++DKV GL +GADDY++KPF   EL+ARIRA++RR+ 
Sbjct: 61  EVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I    L+VNL  + V+  G  I LT KE+ ++E     KN  LT+ M    +++
Sbjct: 121 EDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DV+I  LRKK  +       I TV G GY+L+
Sbjct: 181 IDFLTDTNVVDVYINHLRKK-IDKDFDDKLIYTVRGVGYILK 221


>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 250

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + I++ +    D I++D+ L DI GF V
Sbjct: 13  IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   ++ PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 73  TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQDP 132

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   ++   DL +N D+  V   G  I L+  EY+++  L   +   L+K   LNH++ 
Sbjct: 133 DEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 192

Query: 181 GRDEPEVKIIDVFICKLRKKLS------NAAGGKN---YIETVWGRGYVLR 222
                +  I++ +I  LRKK+            K     IET  G GY++R
Sbjct: 193 YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMIR 243


>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRKL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei DM98]
 gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 14]
 gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 91]
 gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 9]
 gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei B7210]
 gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 7894]
 gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei NCTC 13177]
 gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 112]
 gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei BCC215]
 gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
 gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
           [Burkholderia pseudomallei K96243]
 gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
           1710b]
 gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           668]
 gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106a]
 gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 305]
 gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 406e]
 gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei S13]
 gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1655]
 gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 576]
 gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei Pakistan 9]
 gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
           MSHR346]
 gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1106b]
 gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
           pseudomallei 1710a]
          Length = 230

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG+ I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
              + +  ++D  I ++R K+         I TV G GYVL +    E CE 
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQD-YEPKLIHTVRGMGYVLEQRG--EPCES 228


>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 229

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+A+   + L L+ +   V     GEDG+E  + +  DA++LDL L  + G E
Sbjct: 3   RVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ + +      D V GL++GADDY+ KP     L ARIRA++RR  G
Sbjct: 63  VCRRIRA-HDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGG 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A           GDL ++    TV  QG  + L   E +++  LS       +++  L 
Sbjct: 122 TADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     + +++D  + +LR K+  + G   Y+ TV G GY  
Sbjct: 182 AVWEHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGYRF 226


>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
 gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis IP 32953]
 gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Antiqua]
 gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Nepal516]
 gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
           Pestoides F]
 gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
 gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
 gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis YPIII]
 gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
 gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
           regulatory system [Yersinia pestis KIM 10]
 gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
           pseudotuberculosis (type O:1b)]
 gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
 gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
           pseudotuberculosis IP 31758]
 gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           Angola]
 gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
           A]
 gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
 gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
 gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
 gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 220

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L SE +         +   L +  ++  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+     ++V I  LR+KL     GK+ I TV G GY L 
Sbjct: 181 WNDDLSSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLE 217


>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 235

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ AL+  + + L+ E + V     G   +   + ++ DA++LD+ L D+ G  
Sbjct: 10  RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR  +   PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RR   
Sbjct: 70  LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    +SL+  GDL+++ D++ V   G  IHLT  E++++  L       L+K   L+ 
Sbjct: 130 ASAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDR 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  ++++++  LRKK+   AG    I T  G GY+++ 
Sbjct: 190 VWSYDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLIKP 233


>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 237

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+K ++  ++  L+ E++ V+    G++G+E+ +  + D ++LDL +  I G 
Sbjct: 4   IKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 64  DLIKEIR-NKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L+       G  I LT  E+Q+I+ L    N   T+E  +
Sbjct: 123 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +     +YI+T++G GY 
Sbjct: 183 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 227


>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 231

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++A   +  L+  +F V +   G  G+   K  ++D IILD+ L  + GF+
Sbjct: 3   KILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR +   K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 63  ILRIIHDTK-DVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     ++I    L +N D++ V +    ++L  KE+ ++  ++   N    K+ 
Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   + V I ++R+K+        YIETVWG GY +R
Sbjct: 182 LFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRIR 230


>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 234

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A+ I   L  + ++V  +  G++G+E  +  E+D IILD+ L +I GF 
Sbjct: 4   KILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEIDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R + 
Sbjct: 64  VCKNIRLLS-NVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + +             L++  D   V +   +I LT KE+ ++ +L+  +N   TK+   
Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++++  +      I V + +LR+KL +      YI+TVWG GY  
Sbjct: 183 ENVWNQDNLEGNNTITVHVKELRQKLKDNVKNPKYIQTVWGTGYKF 228


>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 231

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I L L  + +++      +  ++     +   I+LD  L    G +
Sbjct: 3   KILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKL-VEKPQLILLDWMLPGRSGIQ 61

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+  + +   PV +L+  S  ED + GL +GADDYI+KPF+ + L+ARI A++RR 
Sbjct: 62  FIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLRRV 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +Q+ I    L ++ +A  V  Q + I+L+  E+++++ L        T+E  L+ ++
Sbjct: 122 YEQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLDCIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 E + +D +I +LRK L        YI+TV G GY    + +DE
Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEQYGFD-RYIQTVRGAGYRFSPHFQDE 229


>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 244

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L+  + + L++E ++      G++ + + + +  D ++LD+ +  + G 
Sbjct: 20  IRVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGM 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R A    PV  L+   ++ED++ G+ +GADDY++KPFN EE+V R+R + RR  
Sbjct: 80  ELLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHV 139

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  GDLS++ ++  VE  G  I LT KE++++  L       L+K   L+ 
Sbjct: 140 AAIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQ 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++         +++++I  LRKK+   + G+  I TV G GY ++ +
Sbjct: 200 VWSYDFGGNGSVVEIYISYLRKKI--DSLGEPLIHTVRGVGYTIKAS 244


>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 229

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L+++ V  +   I LT KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +   +   I K+R K        N+I TVWG GY   
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225


>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  ++L L+ E ++V ++  G +G+ +     +D +ILD+ L  + G E
Sbjct: 12  RILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGME 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           VLR +R    S PV +L+    + DKV GL  GA DYI+KPF  EEL+ARIR + +    
Sbjct: 72  VLRRIRQVS-SLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      ++  G L+++ +   V      + LT KE+++++ L L KN  +T+E  L  +
Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  ++DV+I  LR K+      K  I TV G GY +++
Sbjct: 191 WGYDYLGDTNVVDVYIRYLRNKIDQRFEDK-LIYTVRGMGYQIKD 234


>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 232

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  +I++ LK+E   VY    G D + + +  E   I++D+ +  + G + 
Sbjct: 6   ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        +  G + +N  AK V V G  I LT  EY+++E L        + E    +
Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRLTPIEYKILEFLMESIGQVFSIEQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        Y++ VWG GY ++E 
Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231


>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
           regulator protein [Burkholderia sp. TJI49]
          Length = 233

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V     G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHTDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 65  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
 gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
           43734]
          Length = 228

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L+ E F   V   G + ++  + +  D I+LD+ L  + G +
Sbjct: 7   KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    + P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCKAIRETS-TVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 125

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    I   DL +++    V   G  I LT  E+ ++  L+ R     ++E  L  ++ 
Sbjct: 126 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V I +LR K+         I+TV G GY 
Sbjct: 186 YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 225


>gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771]
          Length = 223

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + +++ +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDIKSSKATVNGTALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 247

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 123/237 (51%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   PV +L+ ++  + KV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  ICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRA 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGSLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   A   + E
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRRPRYIKTVYGAGYCLELPAVPPSGE 239


>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
 gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 230

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           ++L++ED++ +   +   ++   + V      E    L K  +  D +++D  L    G 
Sbjct: 4   KVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGASGV 63

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+ + L+  +     PV +L+     +D+V+GL++GADDY+ KPF+  EL+AR++A++RR
Sbjct: 64  ELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRR 123

Query: 119 SR--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S    +    I  GD+ ++     V++ G  +HL   EY+++           ++   L+
Sbjct: 124 SGKGNNPSEQISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +   E + +DV I +LRK L +    +NY++TV G GY  
Sbjct: 184 SVWGQQVVVEERTVDVHIRRLRKALQDY-NVENYVQTVRGSGYRF 227


>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
 gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           R309803]
          Length = 227

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISHA 123

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   S     DL ++   + V+   +   LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 IKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+         I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKIDCNVDVP-LIHTVRGVGYVLK 226


>gi|126437092|ref|YP_001072783.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236892|gb|ABO00293.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 251

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L  ++F   + D G D + + + ++ D +ILDLGL  + G E
Sbjct: 19  RALVVDDEAALAEVVASYLNRDHFTTRIVDNGPDAVAVARDFDPDVVILDLGLPGMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D + GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRRLRTFSDAY-VVMLTARDTEMDTIVGLTVGADDYVTKPFSPRELVARIRAMLRRPRA 137

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +          + +  G L +++ A+ V + G  I LT  E+ ++  LS R    L++
Sbjct: 138 TPERESDGGGDVAAPLSFGPLRIDVAAREVSLDGEPILLTRTEFDLLAALSARPGVVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + +G       ++DV I  +R+KL +      Y+ TV G GY +
Sbjct: 198 RQLLETVREGPWVGNEHLVDVHIGHVRRKLGDDPAAPRYVITVRGVGYRM 247


>gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 225

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L S+ F       G    +  +  + D ++LD+ L    G ++
Sbjct: 4   IYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLPGESGLDI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           L+ LR ++ +   PV +L+  +S  D V GL +GADDYISKPF   EL++R++A++RR  
Sbjct: 64  LKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLRRGG 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   ++L+V GD++++L    V  QG    LT KE+ ++  L       L+++  +  
Sbjct: 124 RQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKEFDLLHYLMANAGIVLSRDQIMEA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E + ID+ I  LR+KL  A      I+TV G GY ++
Sbjct: 184 VWSFSYAGESRTIDMHIRSLRQKLGEAG---RIIQTVRGVGYRIQ 225


>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 234

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 73  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQI 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231


>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
 gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
          Length = 223

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+   L +E + V V   G +G+        D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V  ALR A    PV +L+      D+  GL +GADDY++KPF+   LVAR++A++RR  
Sbjct: 61  RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++  GDL V+   + V   G  + LT KE+ ++E L+ R +  + K   L H++
Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   E +  I++V+I  LR+KL         I TV G GY L 
Sbjct: 181 DFAYEGDPNIVEVYISALRRKLGAD-----RILTVRGAGYRLV 218


>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
 gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
           pestis Pestoides F]
          Length = 229

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        D ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V      + +   E++++           ++E  LN++
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E   +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDLTVDVHIRRLRKALETD-GHDKMVQTVRGTGYRF 225


>gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 223

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++ARIRA++RR+ 
Sbjct: 61  TVLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHASSEIICGPVRLDTKSSKATVNGAALKLTSHEYRLLAYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
 gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
           sp. MED297]
          Length = 240

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 110/222 (49%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I   L+   +        +D   +    + D I+LD  +  + G E 
Sbjct: 11  ILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQVSGVEF 70

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+   ++   P+ +L+     + K+ GL++GADDYI+KPF+  ELVAR++A++RRS 
Sbjct: 71  ARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRRST 130

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++ ++  +   G  + +   E+++++          T+   L+ ++
Sbjct: 131 PAGIDEPIEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    + + +DV I +LRK L +    K+ I+TV G GY  
Sbjct: 191 GGNVYVDERTVDVHIRRLRKGLGDEF--KSLIQTVRGTGYRF 230


>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++    +  L+   F+V + + G  G+   K  EFD +ILD+ L  I GFE
Sbjct: 3   RILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR+ A + +   
Sbjct: 63  ILKRVRDVK-DIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +         L +  +++ V V G  +++  KEY+++  +    N    +E 
Sbjct: 122 LKSKYGNENPNETFTIRGLEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGREE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   + V I ++R+K+        Y+ETVWG GY  R
Sbjct: 182 LFERIWGFDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRFR 230


>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 224

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+++DD  +   +  +L  E ++V V   G+D ++       D I+LD+ L  + 
Sbjct: 1   MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV++ LRVA  + P+ +L+   ++ D+V+G + GADDY+ KPF  EELVARI+A++RR
Sbjct: 61  GLEVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++     ++   D+ ++   +        I L+  EY+++ L   R    LT+++ ++ +
Sbjct: 121 NQVERHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E    +++V+I  LR  L    G    I T+ G GYV RE
Sbjct: 181 WGLDFEGSSNVLEVYIGYLRNMLEAD-GEARLIHTIRGIGYVFRE 224


>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 228

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 129/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +   ++L L+ +++ +   + G +  +     + D +ILDL L DI G  
Sbjct: 3   KILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQL-VKQPDLVILDLMLPDIDGLS 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R      P+ +++  ++ +DK+ GL  GADDYI+KPFN  E+VAR++A +RR + 
Sbjct: 62  ICKSIRKKYY-YPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +++     I    L++N  +K V +    I LT  E++++E+L  +K   L+ E   N
Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELFN 180

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++          I V +  LR+K+ ++     YI+TVWG GY++ 
Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYIIE 227


>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
 gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
          Length = 255

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   I+   + E   VY    G   +++ K  +FD II+D+ +  + GF 
Sbjct: 35  KILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGFS 94

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  K +TP+ +LS  +   DK+ G + G DDY+ KPF+ +E++ARI AI++R++ 
Sbjct: 95  ACKEIRKFK-NTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKS 153

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +    L +N  A+ V + G + +LT KEY ++  L   KN  LT+   L  +
Sbjct: 154 GNEPVGETVKFEGLEINFTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEV 213

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + ID  I  LR  L      + +I T+ G GY  +
Sbjct: 214 WGYDFFGDDRTIDTHIKMLRNNLGPY---RKFIVTLRGMGYKFQ 254


>gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
 gi|151281395|gb|ABR89805.1| response regulator of copper sensing system [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  I   L+   F V V   G DG  +     +D ++LD+ L D+ G+
Sbjct: 1   MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A    PV  L+   S++D+V+GL+ GAD Y+ KPF   EL+A +R ++RR  
Sbjct: 61  HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             AQS  +   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +    +IDV I +LR K+ +       I TV G GY L
Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKM-DEPYEPKLIHTVRGMGYTL 221


>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 231

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 121/229 (52%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +A  +EL L++E+F VY     E+     +  E D  +LD+ +  I G E
Sbjct: 4   KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + + P+ +L+   +  DK++GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 64  LCKKIRE-RYNYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +      A+ ++    L +N       +    + LT  E+ ++ +L  +K   ++ E   
Sbjct: 123 YNTGTVKAEEILEHKGLVLNKKTHECFLNERLLSLTPTEFSILVILCEQKGNVVSAEELF 182

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++           I V I  LR+K+ ++     YI+TVWG GY + +
Sbjct: 183 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 231


>gi|254411491|ref|ZP_05025268.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181992|gb|EDX76979.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 362

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 128/233 (54%), Gaps = 1/233 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA +I   L  +N+ V +   GE G++    Y +D I+LD+ L  +   
Sbjct: 1   MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A  ++P+ +LS  ++ +D V GL +GADDYI KP   E L AR+RA++RR+R
Sbjct: 61  SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G+L ++     V   G  + L+ KEY ++ LL        +++  +  L+ 
Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
             D P  + +   +  LR+KL  A  G + IETV+G GY L++  + +T   L
Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVG-DIIETVYGFGYRLKDICELQTASKL 232


>gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 235

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ ++  +   L+ + F+ ++T+   DG++  +  + D IILDL L D  G EV
Sbjct: 7   VLIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTLPDADGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ ILS  SS  DKV  L  GADDY++KPF+  ELVAR++A +RR    
Sbjct: 67  CRELRTL-TSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +   Q L+  G LS++  A+ V      I L+ KE+ ++  L+   N   TK   L+ 
Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      E   I V++ +LR+KL  +     YI TVWG GY    +  +
Sbjct: 186 VWGYSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGYKFDPDETE 235


>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +A +I   L+ E F V V   GE+ +     ++   ++LD+ +  + GF+
Sbjct: 4   RILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L        V +L+  + I DKV GL+ GADDY++KPF+  EL+AR  A++RR   
Sbjct: 64  VCRRL-PTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLEA 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + I  G L +  D++TV   G  I LT KE+ ++ LL  + +   +++  L  
Sbjct: 123 GKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLEL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++    E   + +D+ + +LRKKL   A     ++TV+G GY 
Sbjct: 183 VWGIDYEGGTRTVDIHVQRLRKKLG--AQHAALLQTVFGVGYK 223


>gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 223

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   LK   + V     GE+G  L     +DAIILD+GL ++ G 
Sbjct: 1   MRILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  TVLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ S I+ G + ++  +    V G  + LT  EY+++  L       +++   + H+YD
Sbjct: 121 GHSSSEIICGPVRLDTKSSKATVNGTTLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY ++  
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGLGYRIQAP 219


>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 226

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +  ++    +S  F V V   G   ++  +     A++LDL L    G +
Sbjct: 3   RILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSGQD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R    + P+ +LS  S + DKV  L+ GADDY++KPF+  EL+AR+R  +RR   
Sbjct: 63  ICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLIP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q +    ++ V+     +   G  + LT +E++M+      K+  +++   LN ++
Sbjct: 123 SIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                P  + +D  I +LR+KL        +  TV G GY   E
Sbjct: 183 GYHSYPTTRTVDTHILRLRQKLERDPADPIHFRTVHGTGYKFVE 226


>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 226

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA S++  L++E F V V   G + +   +   +D I+LD+ L  + G+
Sbjct: 1   MRVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR  ++ TP+ +L+      D++ GL  GADDY++KPF+ + L+ARIR++VRR  
Sbjct: 61  EVCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL  +   K V   G  I LT +E  ++     R    LTK   L +++D
Sbjct: 121 TERPTILEVGDLRYDPARKAVSRAGQPIDLTSRELALMAFFMRRAGDVLTKLEILENVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++V++ +LR+K+    G  +  ET  G GY LR
Sbjct: 181 FAFEGDPNIVEVYVGRLRRKVDKPFGCADL-ETFRGTGYRLR 221


>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 225

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           ++L+++D++ +   I   LK+++F V     GE+ I+L  +  +   +ILD+ +  + G+
Sbjct: 5   KVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R      PV +L+  S   D++RG + GAD+YISKPF+ + LVAR+ A++RRS 
Sbjct: 65  AVLKSIRE-HSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSG 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G + ++  A +V V G  + L+ KEY+++      +   L++E  LN++++
Sbjct: 124 IQQEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + ID  + KLR KL        YI TVWG GY     
Sbjct: 184 YDYFGDARTIDTHVKKLRAKLK---SKGEYIRTVWGMGYKFDPE 224


>gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 224

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L   +       N  V V   G+  +E+   Y FD ++LD+ L DI G 
Sbjct: 1   MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R LR +K   P+ +L+ + + E+ V GL SGADDY+ KPF   EL AR+ A+ RR+ 
Sbjct: 61  EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  GDL +N  AKTV+  G  I LT KE++++  L       ++++  L+++
Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +    ++DV+I  LRKK+ +       I T+ G GYV++ 
Sbjct: 181 WDINFDMNTNVVDVYITYLRKKV-DKPFKTKLIHTMKGLGYVIKP 224


>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 235

 Score =  265 bits (678), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +++ LKS+ FN      G + I L +  + D IILD+ + ++ G E 
Sbjct: 6   ILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVMMPNLNGIET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  CLKIREIK-EMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRRFHMF 124

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +++I   DL + L+   V +  + + LT  E+ ++ LL+  +    + E
Sbjct: 125 GKNTNMLEVEEENIIQIEDLKIKLETHEVLLGDNIVKLTPTEFDILSLLAQSRGKVFSIE 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++         + V I K+R+K+        +I+TVWG GY + +
Sbjct: 185 NIYESVWNQEFMTSDNTVMVHIRKIREKIEENPRNPRFIKTVWGVGYKVEK 235


>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
 gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Turicibacter sp. HGF1]
          Length = 230

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   ++  L    F V +   GE+G++     ++D I+LD+ L    GF 
Sbjct: 4   RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR   IST + +LS      D+V GL  GADDY++KPF+  E+V++I+AI+RR   
Sbjct: 64  VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    ++ +  G + ++     V V G  I  T KEY+++E L   K   +++++ L+ 
Sbjct: 124 LSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+    + + +I+DV I K+R+KL +       I+T+ G GY+L +   D
Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKDYGIK---IKTIRGIGYMLEDEVHD 230


>gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   +   L +E++             L +  ++  IILDLGL D+ G 
Sbjct: 1   MKILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGLPDLDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R + +  PV +L+   +IED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   ++ +NL  + V   G +I LT KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+     ++V I  LR+KL     GK  I+TV   GY L 
Sbjct: 181 WQDDLSSNTLEVHIHNLRRKL-----GKERIKTVRSVGYRLE 217


>gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
 gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 232

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/229 (37%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++A+A  I+  L+ + + V V   G + ++      FD +ILDL L  I G 
Sbjct: 1   MRVLIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLMLPQIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR      PV +L+   SI+D+VRGL SGADDY+ KPF  +EL+AR+RA+ RRS 
Sbjct: 61  TVCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRST 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  +   DL ++   + V   G  I LT KEY ++E L       LT+ M   H++
Sbjct: 121 DAPKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +     +  +IDV+I  LR+K+ +       I+TV G GY L   A+ E
Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKI-DDPFPVKLIQTVRGAGYRLWYEAEHE 228


>gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium
           variabile DSM 44702]
          Length = 231

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD+++  ++   L    ++V     GE+   L      D +I+D  L  + G 
Sbjct: 1   MKILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGILPKVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR+LR +     V +LS  S + D+V GL +GADDY++KPF  EEL+AR+R++ RRSR
Sbjct: 61  EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             A         +   DL++N + + V     RI LT  E+ ++ELL       L++   
Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LR+K + A G    I TV G GYVLREN  
Sbjct: 181 LEEVWGYDFPTSGNALEVYIGYLRRK-TEAEGEDRLIHTVRGVGYVLRENTP 231


>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 248

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 22  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 82  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 140

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR+   LT+   + 
Sbjct: 141 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 200

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 201 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 244


>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 224

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  I L L+ + F V+V   G  G++  +     A++LD+GL  + G EV
Sbjct: 5   VLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLDGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  ++      D++ GL+ GADDY++KPF+  ELVAR+R ++RRS   
Sbjct: 65  CRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGTG 124

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A  + ++  G++ V +D + V      + LT  E+ ++  L        +++  L+ ++ 
Sbjct: 125 APREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  + +DV + +LR KL +A+     I TV G GY
Sbjct: 185 YTASSGARTVDVHVAQLRAKLGDAS----PIRTVRGVGY 219


>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 228

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ ++   +++  K   F V     GE  +E  +       ILD+ L  + GF+
Sbjct: 3   KVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVMLPGMDGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               LR       + +L+  S   DK+ G   GADDY+ KPFN +EL+AR+ A++RR   
Sbjct: 63  TCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRRIGL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++V+G+  ++  A  V      + LT KEY ++++    +   L +   LN +
Sbjct: 123 QSDSKNEVLVSGEFKIDEGAMKVYRSEQELELTPKEYMLMKIFIENQGKALNRNELLNLV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + KI+DV I +LR+K+   +    YIETVWG GY  R+ 
Sbjct: 183 WGYSYPGDAKIVDVNIRRLREKIEENSSKPKYIETVWGVGYRWRKE 228


>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 235

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+      +   L+   F V+    G   + + +  + D IILD  +  + G E
Sbjct: 5   KILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMSGIE 64

Query: 62  VLR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R    R      PV ILS      D+  GL +GADDYI+KPF+  ELV+R++A++RR+
Sbjct: 65  VCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRRA 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A  ++   DL +      V   G  + L  KEYQ++  L  R     ++ + L+ +
Sbjct: 125 RPALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKL----SNAAGGKNYIETVWGRGYVL 221
           +      E + +DV   +LRK +    S+     N I TV G GY L
Sbjct: 185 WGHGVFVEERTVDVHFSRLRKAINGAASDNDKRPNLIRTVRGGGYAL 231


>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
 gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
           BGSC 6E1]
          Length = 227

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E  +   +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S     DL ++   + V+     I LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+         I TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LIHTVRGVGYVLK 226


>gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 263

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L+ E F   V   G + I + +  + D +ILD+GL  I G E
Sbjct: 32  RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  ++  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 92  VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                          V G LS+++ A+ V + G  I LT  E+ ++E LS R    L++ 
Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+ + +G       ++DV I  LR+KL + A    +I TV G GY +
Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
           tuberculosis CDC1551A]
          Length = 234

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 5   RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 65  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 125 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 185 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 227


>gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
 gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
          Length = 228

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E ++V     G   +   +  + D ++LD+ L    G E
Sbjct: 4   RVLIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLPGKNGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  +   D V GL++GADDY++KPF   ELVAR+RA +RR   
Sbjct: 64  VCRAIRAES-DVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAELVARVRARLRRGDA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ +  GDL+++L A +V   G  I LT  E+ ++  L+ +     ++E+ L  ++  
Sbjct: 123 EPET-VTIGDLTIDLAAHSVTRDGTPISLTPLEFDLLLALARKPWQVFSREVLLEQVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 182 RHAADTRLVNVHVQRLRAKVEKDPEKPEIVVTVRGVGYK 220


>gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
 gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family
           protein [Fulvimarina pelagi HTCC2506]
          Length = 225

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+  A  +   LK           GE G+ + +  ++D +I+D  L    G 
Sbjct: 1   MRILIIEDDRETASYLTKALKEAGHVADHAGDGETGLNMAEGRDYDLLIVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            V+  LR +   TP  ILS +  ++D+V GL++G DDY++KP+   EL+AR   +  RR+
Sbjct: 61  SVIADLRKSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++    GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 TGEVETSYQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+     G   + TV G GY++R
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEREFDGP-LLHTVRGSGYIMR 222


>gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 221

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRVLVVEDDKDLNRQISDALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY +RE 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREP 219


>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
           F0305]
 gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 245

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + I++    + D I+LD+ L DI GF V
Sbjct: 12  IVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGFTV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR++  
Sbjct: 72  TRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 131

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  + L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 132 VEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 191

Query: 181 GRDEPEVKIIDVFICKLRKKL-------SNAAGGK--NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+        +    K    I+T  G GY++RE 
Sbjct: 192 YDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYIIREP 244


>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
 gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           mycoides Rock1-4]
 gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           pseudomycoides DSM 12442]
          Length = 224

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V V   G  G+E      +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGIEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+ARIR I RR +  
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQKE 122

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++++++T+      I LT KE++++ +     N  LT+++ L  ++
Sbjct: 123 ESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL        YI+TV G GYV+R
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKLHGVDKE-EYIQTVRGAGYVMR 224


>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 229

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  +  TPV  L+    ++D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  SVLRELRRER-DTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T  G GYVL +   
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFDHKLIHTRRGMGYVLDDGEP 224


>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
          Length = 242

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 19  ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 78

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 79  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 138

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 139 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 199 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 238


>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 219

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 116/220 (52%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+ +ILDLGL  + G 
Sbjct: 1   MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    + ++   + V  QG  I+L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             ++ E   ++V I  LRKK          I TV G GY+
Sbjct: 181 WDEDVESNALEVHIHHLRKKF-----FPELIRTVRGVGYL 215


>gi|291522141|emb|CBK80434.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 232

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +A+ +E+ L S  + ++      DG+ L + Y+    I+D+ +  I G E+
Sbjct: 7   ILVVDDDKEIANLVEIYLSSTGYKIHKAYNAVDGLALLQKYDIKLAIIDVMMPQIDGIEM 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  + + P+ ILS  S+  DK+ GL  GADDY+ KPFN  EL+AR+++ +RR    
Sbjct: 67  CRRIRTCR-NIPIIILSAKSADVDKILGLSVGADDYMIKPFNPMELLARVKSQLRRYLEL 125

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I   D+ ++     V V G  + LT  E+ +++LL+       + +    
Sbjct: 126 NPGVVPDSNMIEVQDVVIDTKKHRVTVDGRDVVLTPIEFNILQLLASHPGRVFSTDEIYE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++ +       + V + +LR+K+         I+TVWG GY + 
Sbjct: 186 NVWNEKLYEANNTVMVHMRRLREKVEKNPRSPQLIKTVWGVGYKIE 231


>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 231

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           R+L++ED++ +   I + LK   F V   + GE+ + + +     D ++LD+ L  I G+
Sbjct: 3   RVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGIDGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R    S  V +L+  S   DKV GL  GADDYI KPF+  EL+ARI AI+RR  
Sbjct: 63  KVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRIN 122

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++ +G   ++L++K    +   I LT  E+ +IEL    +   L++   L+
Sbjct: 123 NVNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      ++K++DV + ++R+K+ N +    YI TV G GY   ++
Sbjct: 183 SVWGSDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGYKWGKD 230


>gi|153955660|ref|YP_001396425.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856034|ref|YP_002473156.1| hypothetical protein CKR_2691 [Clostridium kluyveri NBRC 12016]
 gi|146348518|gb|EDK35054.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569758|dbj|BAH07742.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 239

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D+  L   +E +L+ E F  ++    G DGI LCK  + D ++LD+ + D+ GF
Sbjct: 9   KILLIDDEIELLKLMETVLRKEGFKRIFKALKGTDGINLCKNEKPDIVVLDVMMEDMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RA+R      PV  LS      DK+  L  GADDY++KPF+ +E+V RI+A +RR+ 
Sbjct: 69  EVCRAIREFSY-VPVIFLSARGDHIDKILALGLGADDYVTKPFSPKEVVFRIKAHLRRNI 127

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I  GDL ++     V   G  I LT KEY ++  ++   N  LTKEM 
Sbjct: 128 YIKNELTMKKEKICFGDLIIDFKKGEVLKSGKNITLTPKEYHLLCYMTQNANQILTKEMI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +++   E     I V + KLR+KL +      YI TV G GY  
Sbjct: 188 CDEVWNDNYEGYDNTIMVHMRKLRQKLESNPSKPQYIVTVKGLGYKF 234


>gi|134102881|ref|YP_001108542.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915504|emb|CAM05617.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 228

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F   V   G   +   +  + D ++LDL L  + G +
Sbjct: 7   RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCKAIRTESV-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDA 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 EPAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 224


>gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 263

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ ALA  +   L+ E F   V   G + I + +  + D +ILD+GL  I G E
Sbjct: 32  RALVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGLPGIDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  ++  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 92  VCRQLRTFSDAY-VVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRM 150

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                          V G LS+++ A+ V + G  I LT  E+ ++E LS R    L++ 
Sbjct: 151 RPVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRR 210

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+ + +G       ++DV I  LR+KL + A    +I TV G GY +
Sbjct: 211 QLLDIVREGPWVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259


>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 229

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +  +L+   F     +  +  I        D ++LD  L    G +
Sbjct: 4   KVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +  +  + +   P+ +L+     EDKVRGL+ GADDY++KPF+ +EL+ARI+A++RR 
Sbjct: 64  IAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  I    L ++  +  V   G  + +   E++++           ++E  L+ +
Sbjct: 124 SPTSLEEAIDVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHTERVYSREQLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK +S   G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKAISPL-GHDRLVQTVRGAGYRF 225


>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA2]
 gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
           HL044PA1]
 gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA3]
 gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
          Length = 226

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+++   +   ML+ E F V     G DG+E       D ++LDL +  +PG E
Sbjct: 3   RVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +++   S  DKV GL+ GADDY++KPF+  ELVARIRA+ RR   
Sbjct: 63  VCRQLRQRG-NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++++   V V+G  + L  KE+ ++E+L       +T+   ++ +
Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I +LR K+   +     I TV G GY  +
Sbjct: 182 WGADYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGYKFQ 225


>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
 gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 220

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  IEL L+ EN++V +   G+ G+E      +D I+LDL L +I G E
Sbjct: 3   KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + +TP+ I++  S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR   
Sbjct: 63  ICRQIRQNQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++LI    + ++ DA  V V G  + LT  EY ++ LL   +N  L +E  +  ++  
Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E E  ++DV+I  LR KL    G    IETV G GYV+R+
Sbjct: 180 DTEVETNVVDVYIRYLRNKLKP-FGKDKCIETVRGVGYVVRQ 220


>gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR
 gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae]
          Length = 227

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 128/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L+   FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EV+R LR A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  GDL V+L  +     G RI LT KE+ ++ELL  R+   L+K +  + ++
Sbjct: 121 SLQVQTSLQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       + T  G GY+L   A+DE
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDF-EVKLLHTCRGMGYMLE--AQDE 226


>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
           chloroplast
 gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
 gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
          Length = 255

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ ++   +E  L    + V     G   + L      + ++LD+ +  I G+ 
Sbjct: 9   KILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDGYG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR   
Sbjct: 69  VCQEIRKES-DIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 127

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I  G L ++++ K V     RI LTG E+ ++ELL       L++   
Sbjct: 128 FYFSNTFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTI 187

Query: 175 LNHLYDGRDEP--EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 188 LEEVWGYTPERHLDTRVVDVHISRLRAKLEDDPSNPELILTSRGTGYLFQ 237


>gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 239

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  LA  +   L++  +       G D I L K      I+LDL L    G  
Sbjct: 13  KILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLMLPGSSGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 73  ICRDIRQFS-DVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCVR 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +     L ++        QGH + LT  E+++++ LS++     T+E+ LN+LYD 
Sbjct: 132 PGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYDD 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + ID  I  LR+KL +  G K +I  V+G GY      
Sbjct: 192 YRVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGYRWEAEP 235


>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Acidovorax ebreus TPSY]
 gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 235

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 109/228 (47%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  + + L+   F     + GE           D I+LD  L    G +
Sbjct: 6   RVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPGQSGLQ 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L ++     V  QG ++ +   E++++  L        ++   L+ +
Sbjct: 126 APEQVSDSVSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +DV + +LR+ L         +ETV G GY L    +
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGVGGA---MVETVRGAGYRLTAQPQ 230


>gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365]
 gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330]
 gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family
           [Brucella canis ATCC 23365]
 gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str.
           40]
 gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
          Length = 229

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++++L++E F+V+    G + +   +  + D +ILD+ + ++ G++
Sbjct: 3   KILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+       KV+G Q G DDY+ KPF   ELV R++A+++R + 
Sbjct: 63  LCRELRE-HYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G+L +N     V V      L  KE++++  ++     T ++E  +  ++  
Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +DV I +LR++          I T+ G GY L 
Sbjct: 182 DFAGNERTLDVHINRLRQRFPEENHSFK-IRTIRGLGYRLE 221


>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
 gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 228

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225


>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
 gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
          Length = 249

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 10/244 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V   + G  G  L    + D ++LDL L  + GF 
Sbjct: 3   RILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + +R  +     P+ +L+ +   +DKV G  +GADDY++KPF  EE++ R+RA++RRS
Sbjct: 63  VCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRS 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          I LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK---DETCE 231
           L  ++      +++ I V +  LR KL        YI+TV+G GY L   ++    ET +
Sbjct: 183 LKEVWGYDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLELPSRVNHGETTQ 242

Query: 232 YLET 235
             E 
Sbjct: 243 VSEP 246


>gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
 gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str.
           Malish 7]
          Length = 237

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 131/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 228

 Score =  265 bits (678), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 135/229 (58%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    + V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +DE
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDFPQ-RLIHTVRGMGYVLEE--RDE 228


>gi|332284350|ref|YP_004416261.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330428303|gb|AEC19637.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 130/228 (57%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +T  G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEIKTGDYVRQGLIESGFVVDLTRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK STPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q  +   DL +++  +  + Q  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APAFQDQLQVADLVLDIPRRRAQRQNVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +IDV I +LR K+ +       I TV G GY+L     D
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDD-YEPKLIHTVRGMGYMLDVTLPD 227


>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 246

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L    + V     GE  +E+      D ++LD+ L  + GF V
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  L+ + +I ++V GL  GADDY++KPF+ +EL ARI  I+RR    
Sbjct: 64  CRRIRAESC-VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPA 122

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 123 PTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPR 182

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 183 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 222


>gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 232

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +++ L+S+ + V+    G +G+E+ +  E    I+D+ +  + G  
Sbjct: 5   HVLIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEEIHLAIIDIMMPRMDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTMKLRE-KYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++ V G L +N D   V + G+ + LT  EY+++ LL+       + E   
Sbjct: 124 FLEKLVPQENVHVIGGLEINEDTVEVTMDGNPVKLTPIEYKILLLLAKNPGRVFSSEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++          I V +  +R+K+        Y++ VWG GY L + +
Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIEIDPKKPKYLKVVWGVGYKLEKQS 232


>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
 gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
          Length = 245

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  I        D I+LD  L    G +
Sbjct: 20  RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGSGIQ 79

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR 
Sbjct: 80  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 139

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   EY+++           ++E  LNH+
Sbjct: 140 SPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 200 WGTNVYVEDRTVDVHIRRLRKALE-LTGHDRMVQTVRGTGYRF 241


>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 229

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ +       + + +ILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIKQIRKDS-DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G        ++  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305]
 gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305]
          Length = 221

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 131/221 (59%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   I+L L  +NF V     G+ G +     E+DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R     TPV IL+   ++++++ G  +GADDY+ KPF   E+V R++A++RRS 
Sbjct: 61  DILKQWRKENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S IV GDL ++   ++V + G  I LT KE++++EL +  K+  L + +    LY 
Sbjct: 121 QQVSSEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     GK++I+TV G GY L
Sbjct: 181 WDNEVSSNALEVYIHNLRKKL-----GKSWIKTVHGIGYKL 216


>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           TXDOH]
 gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           Bt4]
 gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
 gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
           E264]
          Length = 230

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG  I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 SSDAPVLRVANLELDLVQRKARRQGSTILLTSKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
              + +  ++D  I ++R K+         I TV G GYVL +    E CE 
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQD-YEPKLIHTVRGMGYVLEQRG--EPCES 228


>gi|24111908|ref|NP_706418.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 301]
 gi|30062021|ref|NP_836192.1| DNA-binding transcriptional activator CusR [Shigella flexneri 2a
           str. 2457T]
 gi|24050711|gb|AAN42125.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30040265|gb|AAP15998.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281599865|gb|ADA72849.1| putative 2-component transcriptional regulator [Shigella flexneri
           2002017]
 gi|313646838|gb|EFS11295.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|332761444|gb|EGJ91726.1| transcriptional activator protein irlR [Shigella flexneri 2747-71]
 gi|332763836|gb|EGJ94074.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|332768456|gb|EGJ98640.1| transcriptional activator protein copR [Shigella flexneri 2930-71]
 gi|333021888|gb|EGK41136.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 227

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K     +   L    F V + D G +G  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    P+ +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL V+L ++ V   G RI LT KE+ ++E     +   L + +  + ++
Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +   IDV +  LR K+ N       I+TV G GY+L 
Sbjct: 181 DMNFDSDTNAIDVAVKLLRGKIDNDF-EPKLIQTVRGVGYMLE 222


>gi|157964137|ref|YP_001498961.1| transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
 gi|157843913|gb|ABV84414.1| Transcriptional activator protein CzcR [Rickettsia massiliae MTU5]
          Length = 243

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 131/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 7   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 67  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 127 GHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 187 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 229


>gi|116329782|ref|YP_799501.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116332664|ref|YP_802381.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|294653520|ref|NP_714877.2| two-component response regulator [Leptospira interrogans serovar
           Lai str. 56601]
 gi|116122675|gb|ABJ80568.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116127531|gb|ABJ77623.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|293630770|gb|AAN51892.2| response regulator [Leptospira interrogans serovar Lai str. 56601]
          Length = 241

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  + + I   L S +++  +   GE+G++  K    D +ILDL L DI G
Sbjct: 1   MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ I++  +   D++ GL+ GADDYI+KPF+  EL  R+    RR 
Sbjct: 61  IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120

Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A   I+ G L ++   + V ++ + ++++ KE+ +++L++       ++
Sbjct: 121 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           EM L  ++    +   ++ID  + ++R KL   +    +IET+WG GY   +N
Sbjct: 181 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233


>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
 gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas tunicata D2]
          Length = 224

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  + G 
Sbjct: 1   MRILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R  +   P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  EVIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   ++ G + +N  ++ V +    + LTG EY+++E L +     ++K     H+YD
Sbjct: 121 GQANPEMIAGPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKK+    G  N IET+ GRGY LR
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKIDPD-GTLNPIETLRGRGYRLR 221


>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 239

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 18/236 (7%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++ +D+  +   ++  +  E F   +   GE  + +   Y    I+LD+ +    GFEV 
Sbjct: 1   MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVMMPKKDGFEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
           + +R    + P+ +++      D++ GL  GADDYI KPF+  E++ARIRA++RR   S 
Sbjct: 61  QEIRKTS-NVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRIDISE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    L +N+    V++ G  ++LT KE ++  LL+       +++  LN ++ 
Sbjct: 120 EDKKDIIRFPGLEINISDYEVKINGQEVNLTKKEIEIFWLLASNPGKVFSRDNLLNSVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAG----------GKNY----IETVWGRGYVLR 222
                + + +D  I +LR K+                       I+T+WG GY   
Sbjct: 180 YEYFGDARTVDTHIKRLRAKVDIPGSMASSESKSTNQPESFIWDIKTIWGVGYKFE 235


>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 241

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 1/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+ED+ ALA ++   L+ E + V V   G   +E    +  D ++LD+ L  + G +
Sbjct: 4   KVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLNGLQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    +TPV  LS   + E++V GL+ G DDY++KPF+  E + R++ ++RR   
Sbjct: 64  VCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRRRAE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +++       ++  A T  +  G +  L  +E  ++ LL  R    ++++  L+ ++ 
Sbjct: 124 TPRAVYEFAGHRIDFRAWTAYLKDGRKEVLGEREMAILRLLIERAGQVVSRDEILDRVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               P  + ID F+ +LR+          ++ TVWG GY      +
Sbjct: 184 QEVFPSSRTIDNFVVRLRRLFEPDPARPVHLHTVWGVGYRFTPQPE 229


>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
          Length = 248

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G EV
Sbjct: 12  IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARIRA  R ++  
Sbjct: 72  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 130

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 131 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 190

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 191 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 248


>gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
 gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 233

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  V   G +G+ L +  +     IILD+ + D+ GF
Sbjct: 4   VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL+ +R  K + PV +L+  S  EDKV GL+ GADDY++KPF   EL+AR+ +++RR  
Sbjct: 64  QVLQEIR-KKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYT 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G   + ++  D+ ++   +TV +Q   + LTGKE+ ++  L+  K    TK+  
Sbjct: 123 TLNPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++      +   I  FI KLRKK+        YI+TV G GY   +  
Sbjct: 183 YTQVWAEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGYRFNKEV 233


>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
 gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L          +ILD+ + DI GF
Sbjct: 15  VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGF 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 75  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 133

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+   + ++   + V +    + LT KE+ ++  L+  K    TK+  
Sbjct: 134 MLNPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQI 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 194 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 244


>gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 244

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A +I   L +E +   V   G  G+E       DA++LD+ L  I G EV
Sbjct: 17  ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLPGIDGLEV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R ++  +   P+ +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 77  CRRIQAERP-VPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 135

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   A+  +V GD+ ++   + V      IHLT  E++++ +L+    T  T+E 
Sbjct: 136 AQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRER 195

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L  ++D  D    + +D  I  LR+KL         I TV G GY     A
Sbjct: 196 LLAEVWDWADASGTRTVDSHIKALRRKLGAD-----LIRTVHGVGYAFEPPA 242


>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
 gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
          Length = 234

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 73  VCFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 192 DFEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231


>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 246

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A++  + + L+   ++V     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFQKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L     ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPTAEQ 236


>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 253

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ A+   +   L    + V     G + + L +    D ++LD+ +  + G+ 
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNGYG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R      P+ +L+ +  + D++ GL+ GADDY++KPF+ +EL ARI+AI+RR   
Sbjct: 75  VCQKIRTQS-EVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRE 133

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R  +   I    L ++   + V      I LT  E+ ++ELL       +++   L
Sbjct: 134 TNANRDVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEIL 193

Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+    R   +++++DV + +LR K+        YI TV G GY
Sbjct: 194 QELWGYAPRRIADMRVVDVHVARLRAKIEEDQRNPEYILTVRGIGY 239


>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria MC40-6]
 gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MC40-6]
          Length = 223

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 138/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+  +   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 233

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I + L+   + V +    +           D +ILD  L    G  
Sbjct: 3   RVLVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLPGQSGLA 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +  R    +   PV +L+  +   DKV GL +GADDY++KPF+  EL+ARIRA++RR 
Sbjct: 63  LAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLRRK 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A  S +  G L ++   + V      + +   E++++  L        ++   L+ +
Sbjct: 123 APEALDSAVELGVLRLDPSTRRVARGEQEVKIGPTEFRLLHFLMTHPERVHSRAQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + +DV + +LR+ L+  A     IETV G GY L + 
Sbjct: 183 WGDHVFIEERTVDVHVKRLREALAPVACS-TMIETVRGAGYRLTQQ 227


>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
 gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 267

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A+A  +   L  E + V     G   ++       D +ILDLGL D+ G +
Sbjct: 45  KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL SGADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   D+ V + A         + LT KE+ ++ +L     + +++E  +  ++
Sbjct: 163 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 222

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   K +D+ +  LR+KL + A    YI TV G G+   
Sbjct: 223 GSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 265


>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
 gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKE-YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 234

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GD+ ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
 gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
          Length = 241

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + L +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 13  MKILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMDG 72

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK+RGL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 73  MQVVKELRKES-QIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 131

Query: 120 RGHA----QSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  A      ++    L +N D+  V  V G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 132 KMQAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEI 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A  G+  I+TVWG GY +
Sbjct: 192 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKI 238


>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
 gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
          Length = 225

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  SI   L+ + +       G++G+ELC    +D I+LDL L  I G 
Sbjct: 1   MHILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R    STPV ILS    IEDKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +S +   +   +    + LT KE  ++E   L +N  ++ E  + H++D
Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G        I V I  LRKKL  A G  + I+   G+GY+L E+
Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRAALGN-DPIQNKVGQGYILMED 223


>gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella
           aurantiaca DW4/3-1]
          Length = 244

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD+ LA      L+     V +   G +G+     + +D ++LDL L    G 
Sbjct: 16  IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +++      D+V GL++GADDY+ KP++  EL+ARIRA VRR+R
Sbjct: 76  EVCRELRTRS-DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 134

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+A      +  G L ++  + T  + G  + LT  E+ ++ +L+ R    L++E  L+ 
Sbjct: 135 GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDL 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    DE   + IDV I +LR+KL         ++TV G GY+L
Sbjct: 195 IKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238


>gi|332705560|ref|ZP_08425638.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332355920|gb|EGJ35382.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 242

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+ + I   L  +NF +     G+  +   + +  D +ILD+ L D  G+ 
Sbjct: 5   KILVVDDDPAIRNLILRFLSQKNFQMQAAQDGKTALATFEQFNPDLVILDVNLPDALGYN 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +  ++    V +L+  S   DK +G Q GADDYI+KPF+ +EL  R+RAI++R R 
Sbjct: 65  LCQQM-QSRTDVFVLLLTSRSDAADKNQGFQQGADDYITKPFDLQELENRVRAILKRKRA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V   L ++   + V +    I LT  E+ ++  L+      L +   +  +
Sbjct: 124 VTATEAERLVFDHLVIDPGRREVTIDEILIPLTALEFDLLHFLACHPGRVLRRSELIQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     + +++DV I ++R+K+   +   + I+TV G GY     +
Sbjct: 184 WEYDYVGDQRVVDVHIGQIRRKIEVNSSDPSLIQTVRGVGYKFEAPS 230


>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 245

 Score =  264 bits (677), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++   I++ LK   + +     G + ++     +FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+ IL+     +D V G + GADDYI+KPF   EL+AR+ AI+RR  G
Sbjct: 80  ACQRIRERS-DVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  G++ ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+ +       I TV G GY + E
Sbjct: 199 VWGYDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKMAE 244


>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++   + L L+ + + V   + GE  +EL +   FD ++LDL L  I GF V
Sbjct: 4   ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R       + +++  +  +DK+ GL  GADDY+ KPF+ +EL  RI +++RR    
Sbjct: 64  CQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRRINVG 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +      L+++G+  ++L           + LT  E+ ++  L    N   T++  L+
Sbjct: 124 DEAASKMTDLLISGNFKMDLKNNKFYSSDEIVKLTPTEFSLLHFLMEHPNDLFTRDELLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E+K++DV I ++R+K+        Y+ T WGRGY+ + N
Sbjct: 184 AVWGENYVGELKVVDVNIRRIRQKIEKDPSSPMYLCTEWGRGYLWKVN 231


>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
           ananatis AJ13355]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  +        D I+LD  L    G +
Sbjct: 20  RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGSGIQ 79

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR 
Sbjct: 80  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 139

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   EY+++           ++E  LNH+
Sbjct: 140 SPMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 200 WGTNVYVEDRTVDVHIRRLRKALE-LTGHDRMVQTVRGTGYRF 241


>gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
 gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio fructosovorans JJ]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD   A  +   LK + + V     G +G+ L     +D +I+D  L  + G 
Sbjct: 1   MKILLIEDDAETAAYVAKGLKEQGYVVDHAAEGREGLFLAAEGPYDVMIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A   TP+  L+  SSIED+V GL++G DDY+ KPF   EL+AR++A+ RR  
Sbjct: 61  AIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGGDDYLVKPFAFSELLARVQALARRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L  +T    GH + L   E++++E L       +T+ M L  ++
Sbjct: 121 LADVTTQLRIADLELDLLTRTASRAGHSLDLKPLEFKLLEYLVRNAGRIVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+    G  + I TV G GY+L
Sbjct: 181 DFHFDPQTNVVETNISRLRAKVDRGFGC-DLIHTVRGAGYML 221


>gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44]
 gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44]
          Length = 229

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 1   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR ++  TPV +L+  + +ED+V+GLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 61  AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    +
Sbjct: 120 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   + E  +++V + +LR KL +A      + TV G GYVL 
Sbjct: 180 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVLE 224


>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 244

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 112/234 (47%), Gaps = 16/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD+  A  I   L  +   V V   G   +        D ++LD  L  + G EV
Sbjct: 5   VLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWMLPGLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A    P+ +L+  S+ +D +RGL  GADDY++KPF   ELVARIR ++RRSR  
Sbjct: 65  CRRLRGAG-ELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSRPS 123

Query: 123 A---------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           A                +++  G L+VN     V V    ++ T  E++++  ++   + 
Sbjct: 124 AGPATVAAVSPAAPESPAVLTVGGLTVNAAQHQVFVHDRPVNCTPGEFRILSAMAASPDR 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             T+   L+ L D       + +DV I  LRKK+  +     ++ TV G GY L
Sbjct: 184 VFTRSQLLDCLTDHGRPVSERTVDVHILNLRKKIETSPRRPQHLLTVHGIGYKL 237


>gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 228

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K ++  ++  L+ E + VY T  G + IE+ K  +   IILDL L DI G EV
Sbjct: 4   ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +     + +L+   ++ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR   +
Sbjct: 64  CRIIRQSS-DVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTY 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +   G L ++ D + V+V G  + +T  E+ ++  L   K   L++E  +N ++
Sbjct: 123 NSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 GIDFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224


>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
          Length = 245

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F+V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DKV GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL +N D+  V   G+ I L+  EY+++  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVGDLEINEDSHDVSRAGYAIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKKLS-----NAAGGK----NYIETVWGRGYVLREN 224
                +  I++ +I  LRKK+      +  G +      IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIMVTDDNGEQHKVTPLIETKRGIGYMIREP 241


>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
 gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
          Length = 229

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    L    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +    TP+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PVDSEAPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|45655829|ref|YP_003638.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|45602800|gb|AAS72275.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 243

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 9/233 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  + + I   L S +++  +   GE+G++  K    D +ILDL L DI G
Sbjct: 3   MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R +R    +TP+ I++  +   D++ GL+ GADDYI+KPF+  EL  R+    RR 
Sbjct: 63  IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 122

Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A   I+ G L ++   + V ++ + ++++ KE+ +++L++       ++
Sbjct: 123 DKKAGIKPNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGKVFSR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           EM L  ++    +   ++ID  + ++R KL   +    +IET+WG GY   +N
Sbjct: 183 EMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 235


>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L+ + F V     G + +++     +   +ILD+ +  + G+
Sbjct: 5   KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  +  +D+++G   G D+YI+KPF+ + LVAR+ AI+RR+ 
Sbjct: 65  QVCREVRQVS-QVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTN 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G + ++  A  V +    I L+ KE++++      +   L++E  LN+++
Sbjct: 124 VLFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL +     +YI+T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---DYIKTIWGMGYKFE 223


>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED  +L   I+  L+  ++   +   GED +       +D +ILD+ L  + GF
Sbjct: 1   MRILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVMLPSLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A  + P+  L+    I+D+VRGL  G DDY+ KPF   EL AR+RA++RR +
Sbjct: 61  EVCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRREK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   D++++   +       ++ L+ +EY ++E L       L++E   +H++D
Sbjct: 121 SATSATLQFEDITLDTQTREAWRGSRQLTLSSREYALLEFLLHHPRQVLSRETIADHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G    +  IIDV+I  LR KL  A+G  + I+ + G GY L+
Sbjct: 181 GEAPYQSNIIDVYIRYLRNKL-CASGEPDVIQAIRGVGYQLK 221


>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
 gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++IL+++D+  +   +   L  E + V     GE+ +++  +  +   ++LD+ +  I G
Sbjct: 4   IKILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPRING 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV R +R      P+ +L+      D++ G   GAD+YISKPF+ + LVAR+ A++RR+
Sbjct: 64  FEVCREIRQTS-KVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRA 122

Query: 120 RGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  +++  G + ++  A TV + G  I L+ KE+++++     +   LT+E  L+ 
Sbjct: 123 NKLGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDS 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ID  + KLR K+       +YI+TVWG GY   
Sbjct: 183 VWSYDYFGDARTIDTHVKKLRSKMGAKG---DYIKTVWGVGYKFE 224


>gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens
           Pf-5]
 gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 236

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+  +     ++   ++LDL L    G  
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTALAAFLEFKPKLVVLDLMLPGQSGLH 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR   
Sbjct: 68  VCREIRAV-ADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQVP 126

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  G LS++ +++ V + G  + LT  E++++ LL+     TL+++  LN +
Sbjct: 127 ETTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILNRM 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                +   + +DV+I KLR KL +       I+TVWG+GY+    A +
Sbjct: 187 RGIEFDGLNRSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFNPFAWE 235


>gi|88703724|ref|ZP_01101440.1| heavy metal response regulator [Congregibacter litoralis KT71]
 gi|88702438|gb|EAQ99541.1| heavy metal response regulator [Congregibacter litoralis KT71]
          Length = 230

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG  L     FD ++LD+ L D+ G+
Sbjct: 1   MRLLVVEDEIKTGDYVQQGLTEAGFLVTLARNGLDGHHLAMTETFDLLVLDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A   TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  RIVQSLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL+++L        G +I+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 VPVMTDQIKVADLTLDLPRHRATRAGRKINLSHKEFCLLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDET 229
           D   + +  +IDV I +LR K+ +       I TV G GY L  E+  +E+
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-EPKLIHTVRGMGYKLEVEDDHEES 230


>gi|262377611|ref|ZP_06070832.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262307498|gb|EEY88640.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  + P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++RR +
Sbjct: 61  NIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S I+   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 QREDSNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +++V I +LR K+ +       I+ + G GYVL    +DE
Sbjct: 181 DMNFDSDTNVVEVAIKRLRSKVDSNF-TPKLIQNIRGMGYVLE--VEDE 226


>gi|254490397|ref|ZP_05103586.1| heavy metal response regulator subfamily [Methylophaga thiooxidans
           DMS010]
 gi|224464530|gb|EEF80790.1| heavy metal response regulator subfamily [Methylophaga thiooxydans
           DMS010]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++     I   L    F V     G DG        FD IILD+ L DI G+
Sbjct: 1   MRLLVVEDERKAGEFIRQGLTEAGFLVTWMSNGLDGYHQAMTETFDVIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L++LR A   TPV  L+   S+ D+V+GL+ GADDY+ KPF   EL+ARIR+++RR  
Sbjct: 61  RILKSLREAGNQTPVIFLTARDSVTDRVKGLELGADDYLVKPFAFVELLARIRSLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   DL +++ ++ V   G +I L+ KE+ ++EL   R+   L + +  + ++
Sbjct: 121 STAIIEELKVADLVLDIPSRKVTRAGKKITLSQKEFLLLELFIRRQGEVLPRSIIASEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +IDV + +LR K+ +    +  I TV G GY L + ++
Sbjct: 181 DMNFDSDTNVIDVAVRRLRAKI-DDEFEQKLIHTVRGMGYKLEDESE 226


>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 230

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A  +E +LKSE++ V + + G+  +E         I+LD+ L  + G++
Sbjct: 4   RILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLSGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  KI+TP+ +L+      DKV GL  GADDY++KPF   EL+ARI+A++RR   
Sbjct: 64  VCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRRIEK 123

Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A   I       GD +++     +     +  LT +E ++++L        L+++  LN
Sbjct: 124 PAAESIGKESFTIGDATIDPRTFELRRGKVQEELTARELKLLQLFHGHPGEVLSRDRLLN 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + +D  I +LRKKL +      ++ TV G GY + 
Sbjct: 184 DVWGYGYYGTTRTLDQVIVQLRKKLGDNGAEPKHLVTVHGVGYKMV 229


>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 229

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   ++ +L+   FN+   +  +   E       D I+LD  L    G ++
Sbjct: 5   VLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGSGVQL 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++L+  +     PV +L+     EDK+RGL +GADDY++KPF+ +ELVARI+A++RR  
Sbjct: 65  AKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRVT 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  I    L +   +  V      + +   E++++           ++E+ L++++
Sbjct: 125 PTSNEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK +S   G    I+TV G GY  
Sbjct: 185 GTNVYVEDRTVDVHIRRLRKAISRH-GHDAMIQTVRGAGYRF 225


>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 233

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+S+ ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 235

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 7   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 67  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  +  G  I   L   E++++           ++   L
Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 187 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 235


>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ +L++ED+  +   I   L+   + V V   G++G+   + +  D ++LD+ +  + G
Sbjct: 22  MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E LR  R      PV  L+   +  DKV GL+ GADDY++KPF+  EL+AR+RA +RRS
Sbjct: 82  LEFLRRFRAT-EQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS 140

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  G+L ++   +T  V+G R+ LT  E++++           T+   L  L
Sbjct: 141 SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    + IDV +  LR K+    G    IETV+G GY L  +
Sbjct: 201 -QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245


>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
 gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
           F0309]
          Length = 236

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
            L  LR      PV  L+   ++ D+V+GL++GADDY++KPF+ +E+ AR+  ++R   R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++  A +++   DL++++D+  V   G  I LT  E++++  L       L+K+  L+ +
Sbjct: 132 TQQAASTVLQVADLTLDMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +V +++++I  LRKK+   A     I TV G GY++RE 
Sbjct: 192 WSYDFGGQVNVVELYISYLRKKI--DADRPALIRTVRGAGYIMREP 235


>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
 gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
 gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
          Length = 232

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++DD  +   IE+ LK + F V+    G + +++    +    ILD+ +  +
Sbjct: 1   MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R +R    + PV  LS  ++  DKV GL +GADDYI+KPF+  ELVAR++A +R
Sbjct: 61  DGIEVCRRIREQ-YNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119

Query: 118 RSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R     Q       + I    L ++  ++ V + G  I+LT  EY ++ L++  +N   T
Sbjct: 120 RYTYFNQVPSEVHKNKIQIRGLEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++  R       + V I +LR K+         I+ VWG GY + +
Sbjct: 180 LEEIYESIWRERAHESNNTVMVHIARLRNKIEEDPKKSTIIQNVWGVGYKIED 232


>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ +++ +I   L+ E F V     G + +E    ++ D ++LD+ +  + G+
Sbjct: 2   IKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVMMPKMNGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L  A     + +L+  + I DKV GL+ GADDY++KPF+  E+VAR++A+ RR +
Sbjct: 62  EVCRKL-EAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRRRQ 120

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +          +  G + + L ++TV V G    LT KE+ ++ LL+   +   ++E 
Sbjct: 121 IESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSREA 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            L  +++       + +D+ + +LRKKL    G    I+TV+G GY 
Sbjct: 181 LLEQVWEMDFAGGTRTVDIHVQRLRKKLGEWQG---LIQTVYGIGYK 224


>gi|289434787|ref|YP_003464659.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171031|emb|CBH27573.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
          Length = 228

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKKGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K++     K ++ T+WG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDT--KPFLHTIWGVGYKFDET 227


>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 224

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   I+  L+ E ++V     G++ +E+        +ILD+ L  + G+ V
Sbjct: 5   ILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPLLDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +L+  S  +DK+ G + GADDY++KP + + L A+++ +++R + +
Sbjct: 65  CTNIRE-KSEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKRIQPN 123

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S +     L ++  +  V ++   I+L+ KEY ++   S  K  TLT++  L++++  
Sbjct: 124 EKSKVQNFDGLKIDAISHEVTIEDKEIYLSPKEYDLLIYFSNNKGITLTRDKILDNVWGE 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  + +LR+KL + A     + TV G GY   
Sbjct: 184 DYYGDLRTVDTHVKRLREKLQDKAY---LVATVRGSGYKFE 221


>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 232

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 8   RVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMMPGMDGFG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR   +  PV  L+   ++EDKV GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 68  MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 127

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     + +   DL ++ D + V   G  + L+  E+ ++    +   T L+K   L H+
Sbjct: 128 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILAHV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++     EV +++ ++  LR+K+         I T+ G GYV+RE 
Sbjct: 188 WNYDFGGEVGVVESYVSYLRRKI--DTTEPRLIHTLRGVGYVMREP 231


>gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 236

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D++++   ++L+L  E F  V     GE  +   K + +D I+LD+ L D+ G+
Sbjct: 5   RILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDIMLPDMTGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ +A+R      P+  LS  +S  DK+ G   G DDYI+KPFN  E+VARI+  + R  
Sbjct: 65  EICQAIRKT-TDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    + ++  G  ++NL +  + V G  + L+G+ Y ++       N   TKE    
Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           H++      +   + V I KLR+K+        YI+TV G GY L   A ++
Sbjct: 184 HVWKDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKLVPAAGNQ 235


>gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 258

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 130/228 (57%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD++++  ++  L  E F+V     GE+GI+L +   FD I+LDL L  + G +
Sbjct: 31  QILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLMLPKLNGMD 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV I+S      +K  GL  GADDYI+KPF+  EL AR++A +RR+  
Sbjct: 91  LLKIIREQS-KIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +A       ++I   +L+++++   +  +   I LT KE+Q+I+LL        T+E   
Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++     +  II+V + +LR+K+ +      YI+T+WG GY L E
Sbjct: 210 RSVWNEDYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 257


>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
 gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA +I  +LK+  ++V V   G+ G++      +D IILD+ L  + GF
Sbjct: 1   MRILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R  KI TP+  L+    I DKVRGL  GADDY++KPF  EEL+ARIR ++RR  
Sbjct: 61  DILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D  +NL    +      + L  KE+ ++  L    N  +TKE+ +  ++ 
Sbjct: 121 EITTDTLRFHDAELNLSTYELSCGVKSVKLGLKEFNILNYLFSNGNQIVTKELLIEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + E   ++V+I  LRKKLS        I TV G GY L  N   E+C
Sbjct: 181 FDADVEYNNVEVYISFLRKKLSFIKSN-VIIRTVRGVGYCLGVN---ESC 226


>gi|332308855|ref|YP_004436705.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332176184|gb|AEE25437.1| two component heavy metal response transcriptional regulator,
           winged helix family [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      I+  L    F V +   G DG       E++ IILD+ L DI G+
Sbjct: 1   MKILVVEDETKTGDYIKQGLAESGFVVELVRTGLDGHHKAMLGEYELIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR +   TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILSSLRESNNHTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL +++ ++     G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 SVPNNILHIADLELDIPSRIATRSGRTINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +IDV I +LR K+ +    K  I+TV G GY +
Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFSLK-LIQTVRGMGYKM 220


>gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 227

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 6   RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 66  VCKAIRAESG-VPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 125 EPAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223


>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 234

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL+  +   L +E ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++V GD+ ++ + + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGEEQDPIRTVRGAGYALDD 227


>gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553]
 gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553]
          Length = 233

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +V 
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQVC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R LR    S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR     
Sbjct: 65  RDLRAFS-SAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNKGQ 123

Query: 124 Q--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +    +  G LS++   ++V   G  + LT  E++M+  L+ +    LT++  LN +   
Sbjct: 124 EQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 + +DV + KLR+KL +       I+T+WG+GY+    A +
Sbjct: 184 EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLFSPKAHE 229


>gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 246

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A +I   L++E F V     G   +   + ++ + ++LD+ L    G E
Sbjct: 20  RVLVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + +  GDL ++   + V VQ   +HLT  E+ ++  L+      L++E  
Sbjct: 139 ATLAATAPRGATLRLGDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+         I TV G GY L   A+
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKIGAD-----RIRTVHGVGYALETPAQ 245


>gi|158336600|ref|YP_001517774.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306841|gb|ABW28458.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 227

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 114/223 (51%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +   L+ +++ V V   GE G    +  +++ I+LDL L  + G 
Sbjct: 1   MRILLVEDDDRIAKPLAEDLRHQHYVVDVAADGESGWHYTQTADYELILLDLMLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR +  S  V +L+   ++ DKV GL +GADDY+ KPF  +EL ARIRA+ RR  
Sbjct: 61  SLCQQLRRSGYSGFVLMLTAKDTLTDKVMGLDAGADDYVVKPFELDELAARIRALCRRPP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++            + LT KEY ++E L        T+ M L+ L++
Sbjct: 121 QIQPSILKQGALQLDPIHHHAHYGETLLDLTPKEYILLEHLLQHPGQVFTRAMLLDRLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    +   I  LR KL  A G    IET++G GY L  
Sbjct: 181 LDRASSEGTVKTHISNLRCKLKAAGGSDQLIETLYGVGYRLNP 223


>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 233

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +      G +G+ L          +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  +  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+   + ++   + V V    +  T KE+ ++  L+  K    TK+  
Sbjct: 123 MLNPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQFTSKEFDLLAFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YTQVWEEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNKEA 233


>gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11]
 gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11]
          Length = 239

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      +I  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSAEDKMIEFGEFRLNLGTREMFRNDEPMPLTSGEFAVLKSLVTNMREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   +  +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVFVPDGAE 238


>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
 gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
          Length = 254

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F+  V   G + +   +  + D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +    P+ +L+  +   D V GL+SGADDY++KPF  +ELVAR+RA +RRS  
Sbjct: 64  ICKTIRRSSP-VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   +L++++ + TV      + LT  E+ ++  L  +     T+E  L  ++  
Sbjct: 123 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 KHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 221


>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
 gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKE-YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|225570827|ref|ZP_03779850.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
 gi|225160289|gb|EEG72908.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM
           15053]
          Length = 234

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 114/229 (49%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   +E  L+    + +     G + + +C+ +  D IILD+ L DI G 
Sbjct: 4   KILLVDDEKDIVDLLEETLRKDAAYEIKKAHTGAEALSMCREFHPDVIILDIMLPDIDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R     + +  LS      DK+ GL  G DDYI+KPF+  E+  R++A +RR +
Sbjct: 64  EICRQIRGFSYCS-ILFLSSRDDDIDKILGLSGGGDDYITKPFSPREVAFRVKAQLRRQK 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L+++ ++  V   G  I LTG+E+ ++  ++      ++KE  
Sbjct: 123 YQHSIPPQQEKLLPAGGLTIDSESCRVCKNGEEIELTGREFLLLSYMAENAGRIISKERL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          I V I  +R+K+ +       + TV G GY L++
Sbjct: 183 YEQVWGEYSSICDNTIMVHIRHIREKIEDNPSEPELLVTVKGLGYKLKK 231


>gi|28379053|ref|NP_785945.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557185|ref|YP_003063602.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308181246|ref|YP_003925374.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271891|emb|CAD64796.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046112|gb|ACT62905.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308046737|gb|ADN99280.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 242

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 17/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M++L+IED+K+++  + +  K E ++ +    G + +E+       +D + LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEMFNEDVDGWDMVTLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R A  + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQSL------------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRK 165
           +     +             + T    +N   +   +   +I  LT KE+ +++ L+ + 
Sbjct: 121 ADLAKTTPADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIQDLTPKEFDLLKTLAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               ++E  L  ++D     + + +D  I KLR+K+  A  G   I+TVWG GY   ++ 
Sbjct: 181 RQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDDSG 238

Query: 226 KD 227
            D
Sbjct: 239 VD 240


>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
 gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
           12442]
          Length = 228

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFE
Sbjct: 12  HILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS  
Sbjct: 72  VAKMIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++ +   ++ V+ DA  V V    I LT KE+++++LL   K   +T+E  +  ++ 
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E ++ID  I  +RKKL  +     YI+TV G GY + E
Sbjct: 191 YEYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228


>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
           tcrA [Mycobacterium tuberculosis EAS054]
 gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
 gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
           [Mycobacterium tuberculosis EAS054]
          Length = 253

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 24  RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 84  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 246


>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
 gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
           15053]
          Length = 235

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +E+ LKS+ + VY    G +G+E+ +  +    I+D+ +  + G  
Sbjct: 5   HVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR      PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MVVRLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRK 123

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A+         ++ V G L +N D     V G  + LT  EY+++ LL        + E
Sbjct: 124 FAEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +++ R       I V I  +R+K+        Y++ VWG GY + + A
Sbjct: 184 EIYERVWNER-AITTDTIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235


>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
 gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  +A  I   L     +V     G D +  C + + D  ILD  L  + G 
Sbjct: 1   MKILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDCDMAILDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ALR +K S PV  L+ +  +ED+V GL +G DDY++KPF+  EL ARI AIVRR S
Sbjct: 61  SVLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRKS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+  +   DL+++L A+T   QG+ I L  KE+ ++E+L       +T+   L  ++
Sbjct: 121 ETTAEPSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTRTQLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   EP   +++  + +LR K+ +       I T+   GY
Sbjct: 181 NFNFEPNTTVVETHLSRLRAKI-DKPFDTPLIHTIRNTGY 219


>gi|332670978|ref|YP_004453986.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340016|gb|AEE46599.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 227

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L+SE F     + G++ +   +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMIGIVLRSEGFEPVFCEDGDEALATFRATQPDLVLLDLMLPGRDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYISKPF  +ELVAR+RA +RRS  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GD+S+++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEHLSIGDVSIDVPGHRVARAGRPISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ N       + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIENDPEQPEIVVTVRGVGYK 221


>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 223

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L  + ++    + G   ++  + ++ D ++LD+ + ++ G+E 
Sbjct: 4   ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++      D V+GL  GADDYI+KPF++ EL+ARI A++RRS G 
Sbjct: 64  CKRIREFS-DVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVGK 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S I    L  + D      Q   I LT KE+ ++ L     N   ++E  +  L+   
Sbjct: 123 R-SKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWGYN 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
              E + ID  +  +R+KL         +++TVWG GY   
Sbjct: 182 ANTEERTIDSHVKNIREKLRQVGFPIDQFLQTVWGVGYKWE 222


>gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 232

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD   A  +   +    F V   D G DG+ L     +  IILD  +  + G  
Sbjct: 4   KILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
            L+ALR A I TPV ILS + + ED+V GL SGADDY+ KPF   EL+AR++ ++RR  S
Sbjct: 64  TLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRRGGS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L ++ V+     + L  +E++++E      +  +T+ M L  ++
Sbjct: 124 GSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLS---NAAGGKNYIETVWGRGYVLRENA 225
           D   +P   +IDV + +LR+KL     A G +  + TV G GY L   +
Sbjct: 184 DYHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRLGPES 232


>gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 221

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY +RE 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREP 219


>gi|77460076|ref|YP_349583.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384079|gb|ABA75592.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Pseudomonas fluorescens
           Pf0-1]
          Length = 226

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    FN  +   G  G +L    ++  +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGQYLRQGLTEAGFNTELVADGTTGQQLALSGDYALLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TP+  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLETPILFLTAKDTVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DLS++L  + VE  G RI LT KE+ ++E+L  R+   L K +  + ++
Sbjct: 121 STPQETSLRLADLSLDLIRRRVERSGQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E A
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEERA 225


>gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 132/227 (58%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED+++GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR KL +    +  + T+ G GYVL   + D
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLESRSDD 225


>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD+ +++ +   L    +N+ + D GE   EL   Y+FD I++D+ L  + G 
Sbjct: 1   MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R     TP+ +LS ++S +DK++ L  GADDY+SKPF+ EEL++RI+A+ RR  
Sbjct: 61  QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S       +  G+++++ D   V      I  +  EY++   L   KN  L++   L++
Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +    ++DV+I  +R K+      +  I TV G GY++++
Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDET--EQKIIHTVKGTGYLIKD 224


>gi|169826282|ref|YP_001696440.1| two-component response regulator; MrsR2 protein [Lysinibacillus
           sphaericus C3-41]
 gi|168990770|gb|ACA38310.1| probable two-component response regulator; probable MrsR2 protein
           [Lysinibacillus sphaericus C3-41]
          Length = 240

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+  LA+ +++ L+ E +  +Y      D     +    D ++LD+ L D  G++
Sbjct: 6   ILVVDDEADLANLLKVSLQKEGYKQIYTAGSIHDAWTSFQQTSPDIVLLDVMLPDGEGYD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R      PV  +S  +   DK+ GL  G DDYI+KPF+ +E+  R++A +RR   
Sbjct: 66  LCRRIREIS-HVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRVGY 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                + G A+  I  G   +N D   V   G  + LT KE  ++       +  L+KE 
Sbjct: 125 QTHETTSGMAEKTIQVGPFQLNADETEVHKDGILLELTAKEIGLMACFMHNPHRILSKET 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++          + V I +LR+K+   A    +I TV G GY   
Sbjct: 185 LFERVWGEDFFGSDNTVMVHIRRLREKIEQDASKPIFITTVKGLGYKFV 233


>gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9]
 gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum
           SS9]
          Length = 239

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSVNSKIVEFGEFRLNLGTREMFRGEAPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   +  +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGNE 238


>gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
 gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter
           xylosoxidans A8]
          Length = 224

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED++ LA  +   L   N+ V V   G DG       ++D ++LD+ L  + GF
Sbjct: 1   MRILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR  K  TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+ARI+A++RR R
Sbjct: 61  GVLADLRKHK-QTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+   DL ++L  +  +  G R+ LT KE+ ++ L+  R    L++ +    ++D
Sbjct: 120 GQESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+V + +LR K+ +       + TV G GYVL 
Sbjct: 180 MNFDSDTNVIEVAVRRLRAKI-DDPFETKLLHTVRGMGYVLE 220


>gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14]
 gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14]
          Length = 239

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   + ++
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238


>gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
 gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium
           jeikeium K411]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L+ E F   V   G + ++  + +  D I+LD+ L  + G +
Sbjct: 4   KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    + P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCKAIRETS-TVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    I   DL +++    V   G  I LT  E+ ++  L+ R     ++E  L  ++ 
Sbjct: 123 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V I +LR K+         I+TV G GY 
Sbjct: 183 YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 222


>gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 225

 Score =  264 bits (677), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++   +   F V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+V GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  SVLKRLRDTH-TTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +A   K  I TV G GYVL 
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYVLE 220


>gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 236

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +   L+   F+V     G D +     +  D  +LD+ L D+ GF 
Sbjct: 9   KLLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVMLPDMDGFT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +    PV  L+     EDKV GL  G DDY++KPF+ +E+VARIRA++RR++ 
Sbjct: 69  VTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQP 128

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   DL ++ DA  V   G  I L+  E++++  L L  N  L+K   L+H++
Sbjct: 129 LLDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     +  I++ +I  LR+K+         I+T  G GYVLR
Sbjct: 189 EYNFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVLR 231


>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 228

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 128/227 (56%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +   ++L L+ +++ +   + G   ++     + D +ILDL L DI G  
Sbjct: 3   KILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQL-VKQPDLVILDLMLPDIDGLS 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +++R      P+ +++  ++ +DK+ GL  GADDYI+KPFN  E+VAR++A +RR + 
Sbjct: 62  ICKSIRKKYY-YPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +++     I    L++N  +K V +    I LT  E++++E L  RK   L+ E   N
Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELFN 180

Query: 177 HLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++          I V +  LR+K+ ++     YI+TVWG GY++ 
Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYIIE 227


>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 293

 Score =  264 bits (677), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   I+ +L+ E + N+      E+ I + K  + D I+LD+ +  + GFE
Sbjct: 62  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 121

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 122 ACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 180

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++           + +     + V G  +  + +  Q+++      N  L+K+     
Sbjct: 181 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 240

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I KLR+K+        YI TV G GY    N +
Sbjct: 241 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 289


>gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501]
 gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501]
          Length = 233

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +A  IE+ LK++ + V    LG++ ++  +   FD  +LD+ L DI GF+
Sbjct: 4   KILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPDIDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R      PV +L+      DK+ GL  GADDYI+KPFN  E+VARI+  +RR   
Sbjct: 64  IVQKIRENHF-FPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S   +   I    L +N    T  + G  I LT  E+ ++  L  RK   +  
Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLVERKGEVVPA 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     ++  +       +   I +LR+KL        +I+T+WG GY + 
Sbjct: 183 EQLFEAVWGEKFLDNNNTVMAHIGRLREKLKEPTRKPKFIKTIWGVGYKVE 233


>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 230

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   D+ ++ +   V   G  + L   E++++     +     ++E  L+ ++
Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 189 GRDIYVDSRTVDVHVGRLRKAL-CVHGGEDPVRTVRGAGYAL 229


>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 232

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 134/228 (58%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ ++  ++L L+ E++ V V + G  G+E+ +  E+D ++LD+ L  + G E
Sbjct: 4   RILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR    + PV +L+   ++ DKV G + GA DY++KPF  EEL+AR+R I+R    
Sbjct: 64  VLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQ 123

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H + +     I  GDL+V L  + V  +   + LT +E++++  L+  KN   ++E  L+
Sbjct: 124 HTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E  ++DV+I  LR+KL +       I TV G GY+L+E 
Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKL-DKGFRYKLIHTVRGVGYMLKEP 230


>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E + V     G++ I       +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+R +R      PV +LS  +   DK++GL  GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  LAVVREVRKDS-QIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          I  G L +  D+  V  V G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QHDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  + GG+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227


>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 136/225 (60%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++  +L+   F V + D GE+ + L +   FDA++LDLGL  + G 
Sbjct: 1   MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A I  PV IL+      +KV G ++GADDY++KPF  EE+V R++A++RR+ 
Sbjct: 61  GVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  + +V G L ++  +    V+G  + LT +EY+++  L LR+  T+++   ++H+YD
Sbjct: 121 GHPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +IDV + +LR+KL     G   I TV G GY L   +
Sbjct: 181 RDSDRDSNVIDVLVGRLRRKL-----GAPLIHTVRGLGYRLEAES 220


>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 233

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+   ++V V   G+   E  +    D +ILDL L  + G +V
Sbjct: 4   ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS   
Sbjct: 64  CRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSLS 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   I+ G+L ++L  ++V  +   + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQRL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                    + +DV I KLR+K  + AG    I+TVWG+GY+   +  +
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLFSRSEWE 232


>gi|255320575|ref|ZP_05361754.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262374353|ref|ZP_06067628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262380816|ref|ZP_06073968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302376|gb|EET81614.1| transcriptional activator protein IrlR [Acinetobacter
           radioresistens SK82]
 gi|262297558|gb|EEY85475.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|262310610|gb|EEY91699.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 226

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  + P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++RR +
Sbjct: 61  NIINDIRSSGKTMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + I+   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 QREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +++V I +LR K+ +       I+ + G GYVL    +DE
Sbjct: 181 DMNFDSDTNVVEVAIKRLRNKVDSNF-TPKLIQNIRGMGYVLE--VEDE 226


>gi|253999818|ref|YP_003051881.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313201791|ref|YP_004040449.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986497|gb|ACT51354.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441107|gb|ADQ85213.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 245

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 59/232 (25%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++  L  + F+V       +   +      D ++LDL L    G  
Sbjct: 10  KILMVDDDLRMRELLQRYLSEQGFSVKTVSDSTEMNTVLSSEHIDLLVLDLMLPSEDGLA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR+  
Sbjct: 70  ICRRLRAAGSTMPIIMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVMRRNER 129

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  ++   I  G+   +   +++   G +I +T  EY ++++        L+++  
Sbjct: 130 PVPGAPANSTETISFGEFVFDPSTRSLLKNGEQITITSGEYALLKVFVDHPRQPLSRDRL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        +   + IDV + +LR+ +        Y++T+WG GYV   + +
Sbjct: 190 MQLARGRELDVFDRSIDVQVSRLRRLIEADPTHPRYLQTMWGFGYVFIPDGE 241


>gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
 gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii
           DSM 4541]
          Length = 239

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    +        I+LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +      + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
 gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65]
          Length = 221

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 87/226 (38%), Positives = 139/226 (61%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ALA  ++  LK+ N+     D  + G+   +   +D ++LDLGL+D  G 
Sbjct: 1   MRILLLEDDQALADGLKQSLKNHNYACDQFDTIKAGMSAFEQESYDLVLLDLGLSDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ +R  K +TPV IL+    IEDK++GL  GADDY+ KPF+  EL+AR+RA++RRS 
Sbjct: 61  NFLQHVR-KKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I    L++NL A+T+  +   I L+ +E+ ++E L+  ++  +T+    + LY 
Sbjct: 120 GESSNNITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLYS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE E   ++V I  LRKKL  A      I+TV G GY+++++ +
Sbjct: 180 WDDEIESNALEVHIHNLRKKLPVA-----IIKTVRGVGYMIKKSEE 220


>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
 gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
          Length = 231

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +   ++L L++E + +Y+   G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR    
Sbjct: 65  CRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +Q  ++ G + V+     V V G  +HLT  E+ ++ LL        + E    
Sbjct: 125 SQAEPISQDKVIIGPIVVDRALHVVTVSGKELHLTTSEFDILFLLVSEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG+N I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKVE 230


>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 228

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ IL+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 68  CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121]
 gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121]
          Length = 226

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK +A  I   L+   + V   + G+ G+       +DAIILD  L  + G 
Sbjct: 1   MKVLVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR    + P+ +LS M+ +  +V GLQ+GADDY++KPF   EL AR+  + RR+ 
Sbjct: 61  NLLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNT 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  Q+ +   DLS+NL  +  +     I L  +EY+++E L   ++  +T+ M L  +
Sbjct: 121 HESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I +LR K+ +    +  I T+ GRGYV++
Sbjct: 181 WDYHFDPQTNVIDVHISRLRNKI-DKPFSQVLIHTIRGRGYVIK 223


>gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
 gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator
           protein [Vibrio sp. Ex25]
          Length = 230

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    +
Sbjct: 121 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
 gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Labrenzia alexandrii DFL-11]
          Length = 236

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L+  +   L++E + V     G++     +  + D ++LD  L  + G E
Sbjct: 8   KVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLPGLSGIE 67

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  + +   PV +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI+RR+
Sbjct: 68  LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 127

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++ +GD+ ++ +   V      IHL   E++++E L        ++E  L+ +
Sbjct: 128 SPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLDGV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK L N    K+ I TV G GY   + 
Sbjct: 188 WGHDVYVDERTVDVHVGRLRKAL-NKGKAKDPIRTVRGAGYAFNDQ 232


>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 65  CFELR-KYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58
           M+IL+++DD  +A  +E+ LK+E +   +   G++ +        D   +ILD+ + ++ 
Sbjct: 1   MKILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTN-PDTSLMILDVMMPNMN 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR
Sbjct: 60  GLDVVKTVRKDS-RIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118

Query: 119 SRG----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +       A  ++  G L +N D+  V  V G  ++LT  E+ ++ LL+   N   + + 
Sbjct: 119 AENAVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADD 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 179 IFEKVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229


>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 226

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+      +   L    + V   + G  G    +  ++D +ILD+ L    G+
Sbjct: 1   MRILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  + STPV  L+    + D+VRGL+ GADDY++KPF+  ELVAR+R+I+RR +
Sbjct: 61  TLLHNLRRTR-STPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L  +    QG  I LT KE+ ++ LL  ++   L +    + ++D
Sbjct: 120 PRETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++D  I +LR K+ + A     I TV G GYVL 
Sbjct: 180 MNFNSDTNVVDSAIRRLRSKV-DDAYEPKLIHTVRGMGYVLE 220


>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
 gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
           HGF5]
          Length = 231

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 12/231 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57
           MR +L+++DDK ++  I + L++E + V     GE+ ++         D +ILD+ +  +
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +  R +R    + P+ +LS  S   DK+ GL +GADDY+ KPFN  EL  R++ ++R
Sbjct: 61  NGIDTCRRIRETS-AIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119

Query: 118 RSRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS  +           I    L +N     V   GH I LT +E++++ LL+ +     +
Sbjct: 120 RSTQYNVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++  +       + V I  LR KL    G K  I+TVWG GY +
Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGYK-LIQTVWGVGYKI 229


>gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218]
          Length = 240

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        +++  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
          Length = 240

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 60/238 (25%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G  V
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARIRA  R ++  
Sbjct: 64  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 122

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 123 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240


>gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 241

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LL+EDD+ LA      L+     V +   G +G+     + +D ++LDL L    G 
Sbjct: 13  IQVLLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLMLPGRDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +++      D+V GL++GADDY+ KP++  EL+ARIRA VRR+R
Sbjct: 73  EVCRELRTRS-DVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRAR 131

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+A      +  G L ++  + T  + G  + LT  E+ ++ +L+ R    L++E  L+ 
Sbjct: 132 GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDL 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    DE   + IDV I +LR+KL         ++TV G GY+L
Sbjct: 192 IKGSADEVFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235


>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
 gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
 gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
 gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
          Length = 223

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   I   ++   +     D G + + + K    D +ILD+ +  + GF 
Sbjct: 3   KILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           V R  R    + P+ IL+     EDK++G + GADDYI+KPF+ + L+A++ A++RR + 
Sbjct: 63  VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++ ++ G + + + ++ V V+   I LT KE++++ L     N   ++E  LN ++ 
Sbjct: 122 GIPKNSLILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  I  LRKKL       ++I T+   GY   
Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220


>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
 gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC1989]
          Length = 251

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 91/234 (38%), Positives = 137/234 (58%), Gaps = 1/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+K L  +++  L   +++V   + G +G+ L   + +D  I+D+GL ++ G 
Sbjct: 1   MRLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR  K   PV IL+   S +DKV GL++GADDY++KPF+ EEL+AR+ A+ RRS+
Sbjct: 61  ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G++ +N   K V +    I LT  EY  +E L+L K   ++K     HLYD
Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
              + +  +I+V I +LRKKL      K  I T  G+GY L EN  + T E  E
Sbjct: 181 QDFDLDSNVIEVLIGRLRKKLDPNNIHKP-IVTHRGQGYRLTENTAENTTEKTE 233


>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 228

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M++L+++DDK +   + +   +E ++V     G++ ++      +   IILD+ +    G
Sbjct: 1   MKLLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V++ LR  ++  P+ +LS  S+  DK+ GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  LTVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRRS 120

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               Q     I  G L ++ ++  V  + G  I LT  E+ ++ LL+   N   + +   
Sbjct: 121 GASDQGSGDTIEIGPLIIHKNSHEVKTIDGEDIQLTALEFGILYLLASHPNEVFSADEIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++        K + V +  LR K+  A GG   I TVWG GY + E
Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIETATGGDKVISTVWGVGYKISE 228


>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
 gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sphingomonas sp. S17]
          Length = 230

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  I G E
Sbjct: 5   KMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGISGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR A  +   P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +V  D+ ++     V   G  + L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E + +DV I +LRK + N     + I TV   GY L
Sbjct: 185 WGHDSDIESRTVDVHIRRLRKAI-NIGDRPDIIRTVRSAGYSL 226


>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
 gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
          Length = 230

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G+DG++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
 gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
           Ice1]
          Length = 240

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ +   + L L+ E F V   +     +E+ +  + D +ILD+ +  + G+  
Sbjct: 7   VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  L+      D+V G + GADDY+ KPF+  ELV R++A++RR    
Sbjct: 67  CRKIREFS-EVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +   +LS+  + +   V+G  + L+  EY ++  L+      L++
Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENA 225
           ++ L+ ++      + + +D  + +LR+KLS  +    +Y+ TV G GY    N 
Sbjct: 186 DLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVNP 240


>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 253

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 17/239 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D ++LD+ L  + GF V
Sbjct: 13  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS + +I +KV GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 73  CRRLRAESC-VPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           A           Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225
              L  L+    R   +++++DV++ +LR KL         I TV G GY    L E A
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYCSQRLGETA 250


>gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 225

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A  +   L+     V     G+DG+ +     +DA+++D  L  + G 
Sbjct: 1   MRILVIEDDLEAASYMLKGLRESGHVVEHAADGKDGLYMAAAGSYDAMVVDRMLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    +TPV  LS M  ++D+VRGL++G DDY++KP+   EL+AR+ A+ RR+ 
Sbjct: 61  TIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGGDDYLTKPYAFAELLARLEALDRRAG 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++   DL ++L  ++V   G  I L  KE+ ++E L       +T+ M L +++
Sbjct: 121 AVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKEFALLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR+K+         + TV G GY LR+
Sbjct: 181 DYSFDPQTNVIDVHISRLRQKIDKDFDRP-LLHTVRGSGYSLRD 223


>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
 gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
          Length = 237

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +I + L  E + V     G D +++ +    D IILD+ +  + G  
Sbjct: 3   KILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENVDLIILDVMMPGLDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K S P+ ILS      DK+ GL  GADDYI+KPFN  E+VAR+++ +RR   
Sbjct: 63  TTLKIRE-KSSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYTQ 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +++   G L +N D K V V G  + LT  EY ++ LL        + + 
Sbjct: 122 LGNMNEQSKGEAIYSCGGLVINDDTKEVSVDGELVKLTPIEYNILLLLVRNAGKVFSIDE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               +++         + V I  +R+K+   +    Y++ VWG GY + +  K E
Sbjct: 182 IYTSIWNEEAIGADNTVAVHIRHIREKIEINSRKPKYLKVVWGVGYKIEKQGKSE 236


>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
           pacificum DSM 12653]
          Length = 223

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V     G++G++L     +   I+LD+ L DI G+
Sbjct: 3   KVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDISGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R      PV +++      DK+ G + GADDY+ KPF+  E+VAR++AI+ R+ 
Sbjct: 63  SLLKTIRETS-KVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTY 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +        + +++ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 122 GSQEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++ +D  I +LR+KL      +N I+TVWG GY L  +
Sbjct: 182 GYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 223


>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 246

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V   + G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     P+ +++ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILSFGPLTLVPERFEAVWFEGVVKLTHLEFELLHCLLQRHGQTVSPSDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230


>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
 gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
          Length = 241

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N          E + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMEERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 238


>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tomato T1]
 gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. actinidiae str. M302091]
 gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGESPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis TXDOH]
 gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis Bt4]
 gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
 gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
           [Burkholderia pseudomallei K96243]
 gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
           23344]
 gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710b]
 gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia thailandensis E264]
 gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei SAVP1]
 gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10229]
 gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 668]
 gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106a]
 gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei NCTC 10247]
 gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 305]
 gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei FMH]
 gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei JHU]
 gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei 2002721280]
 gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 406e]
 gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei ATCC 10399]
 gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei S13]
 gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1655]
 gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 576]
 gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei Pakistan 9]
 gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei MSHR346]
 gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei GB8 horse 4]
 gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1106b]
 gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia mallei PRL-20]
 gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
           [Burkholderia pseudomallei 1710a]
          Length = 233

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V  +  G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28]
 gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family
           protein [Brucella melitensis M5-90]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++ R+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV G GY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRMRSGGEGEA 224


>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
 gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L    + V     GE+ +++       D ++LD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R +R      P+ +L+      D+++G   G D+YISKPF+ + LVARI AI+RR+R
Sbjct: 65  EVVREIRKVS-EVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTR 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++  A  V +    I L+ KE++++      +   LT+E  LN +++
Sbjct: 124 QQDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+ +      YI T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSKGA---YIRTIWGMGYKFE 222


>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
 gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
           [Granulibacter bethesdensis CGDNIH1]
          Length = 249

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ALA  +   L+ + F V     G++ +      + D ++LD  L  + G EV
Sbjct: 24  VLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIEV 83

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R        P+ +++     +D VR L +GADDYI+KPFN + L ARIRA++RR+ 
Sbjct: 84  CRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRAS 143

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+ ++   D++++L    V      IHL   E++++E          ++E  L+ ++
Sbjct: 144 PVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK + N  G  + + TV   GY L  + 
Sbjct: 204 GTDIHVEPRTVDVHIRRLRKAV-NGEGEVDLVRTVRAAGYALDTDP 248


>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 229

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ A  +  +L+ E F   V   G+  +E       D ++LDL L  + G +
Sbjct: 3   RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMSGTD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR ++ + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCRSLR-SRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G + +++D   V V G  + L  KE+ ++E L       LT+   +
Sbjct: 122 GGAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLI 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      + K +DV + +LR K+        ++ TV G GY  
Sbjct: 182 DRVWGADYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGYKF 227


>gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1]
 gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum
           aromaticum EbN1]
          Length = 248

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD  L   +   L+ + F V                 FD ++LDL L    G  
Sbjct: 11  RVLLVDDDARLRDLLSRYLQEQGFTVKAVVDAPSMDRALHREHFDLMVLDLMLPGEDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  + + P+ +L+      D++ GL+ GADDY++KPFN  ELVARI A++RR   
Sbjct: 71  ICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHAVMRRQPP 130

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G + VNL  +++      I LT  E+ ++++L       L+++  
Sbjct: 131 SLPGAPTSEDEIVSFGRVRVNLGVRSLTRDEDEIALTTGEFSLLKVLLQHPRQPLSRDKL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           +            + IDV + +LRK + +      YI+TVWG GYV   +      E 
Sbjct: 191 MELARGREYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVFVPDDTKAASES 248


>gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 224

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|332285068|ref|YP_004416979.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
 gi|330429021|gb|AEC20355.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Pusillimonas sp. T7-7]
          Length = 227

 Score =  264 bits (676), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLLVEDETKTGDYVRQGLVESGFVVDLVRTGLDGHHLALTGSYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK STPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRDAKSSTPVLFLTARDSVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q  +   DL +++  +  + +  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APAFQDQLQIADLVLDIPRRRAQRKSVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +       I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDF-DPKLIHTVRGMGYML 221


>gi|331268666|ref|YP_004395158.1| two-component response regulator [Clostridium botulinum BKT015925]
 gi|329125216|gb|AEB75161.1| two-component response regulator [Clostridium botulinum BKT015925]
          Length = 233

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD  +A  I   L  EN++V  +  G +G++     ++D +ILD+ L ++ GF 
Sbjct: 4   RVLVIEDDIEIASIIRKHLTRENYDVNWSSTGSEGLKDFNKDKYDLVILDIMLPEMDGFM 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+   + P+ ILS      DKV+GL+ GADDYI+KPF+  EL AR+   ++R +G
Sbjct: 64  VCKNIRLIS-NVPILILSAKKQELDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +             L +  D   V V    I LT KE+ ++ L++  +N   TK+   
Sbjct: 123 DNKKSQKQDVWSYKQGLKIIKDEMRVTVNDDEIELTAKEFALLVLMAQNENKVFTKKDLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++   +      I V I +LR+K+        YI+TVWG GY  
Sbjct: 183 ENIWHQNNLEGNNTITVHIKELRQKIKEDVKHPQYIQTVWGTGYKF 228


>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 234

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 10  RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L  LR      PV  L+   ++ D+V GL++GADDY++KPF+ +E+ AR++A++RRS  
Sbjct: 70  TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGR 129

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +++   DL++N+++  V   G  I LT  E++++  L       L+K+  L+ +
Sbjct: 130 AQQTRSTVLTVADLTLNVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +V +++++I  LRKK+   +G    I TV G GY++RE 
Sbjct: 190 WSYDFGGQVNVVELYISYLRKKI--DSGRPALIRTVRGAGYIMREP 233


>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
 gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
           LLAP12]
          Length = 226

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  L   +   L+ E F+      GE+G++      FDAIILD+ L  + GFEV
Sbjct: 5   ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++  
Sbjct: 65  LKAIRE-HLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQKI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ +I   ++ V+   + V + G+ + LT  E+ ++E+L        +KE    +   
Sbjct: 124 PAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYALG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     + IDV I  LR KL +   G+  ++TV G GY+ 
Sbjct: 184 RKYTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLF 224


>gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus]
          Length = 235

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E+ + L + + +D +ILD+ L    GF+
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  K   P+  L+  +S  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHLK 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   G   ++  A  ++V G+ +  + + +Q++       N   +KE   
Sbjct: 125 YTPKTIQTSDIYSFGRFQIDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 227

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK +A  +   L+           G DG+       +D +I+D  L ++ G 
Sbjct: 1   MRILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIVDRMLPNVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR +  + PV ILS +  ++D+V+GL++G DDY+ KPF   EL+ARI A+ RR+ 
Sbjct: 61  TIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRTA 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    Q+ +  G++ ++L A+ V      I L  +E++++E L    +  +T+ M L ++
Sbjct: 121 GSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  ++DV I +LR+K+        ++ETV G GYVLR N 
Sbjct: 181 WDYHFDPQTNVVDVHISRLRRKMDEGFAQP-FLETVRGAGYVLRTNG 226


>gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 224

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +L+    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 225

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 127/222 (57%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +A  I+L L++E++   VT  G  G+   +    D ++LDL L  + G EV
Sbjct: 7   VLIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLMLPVLDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +TP+ IL+   S++DKV GL SGADDY+ KPF+ EEL+AR+RA +RR    
Sbjct: 67  ARRVRKTS-NTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL +NLD + V   G RI L+ KE++++EL +        +      ++   
Sbjct: 126 VTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVWP-E 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 ++DV++  LR+KL +  G +  I TV G GYVLRE 
Sbjct: 185 YTGGSNVVDVYVGYLRRKLEHD-GERRLIHTVRGVGYVLREE 225


>gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 14/236 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+K +A +IE+ LK++ +NV+    G +G+E+    E    I+D+ +  +
Sbjct: 1   MKSYNVLVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEEIHLAIVDIMMPRM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +R
Sbjct: 61  DGIAMTMKLRE-KYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQLR 119

Query: 118 RS---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R               +  V G L +N+D   + V G+ + +T  E++++ LL       
Sbjct: 120 RYSKFLSLVGVEKEKSNSFVIGGLELNVDTVELTVDGNPVKITPIEFKILHLLMQNPGRV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + E     +++ +       I V +  +R+K+        Y++ VWG GY + + 
Sbjct: 180 FSPEEIYERVWNEQ-AINTDTIMVHVRNIREKIEINPKNPKYLKVVWGVGYKIEKQ 234


>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 227

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  LA+ +   LK+  F  +  D G   I+  K    D IILD+ L +  GFE
Sbjct: 4   KILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNKDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +++      D++ GL+ GADDYI KPF+  EL+AR++AI RR   
Sbjct: 64  ICREIRSFS-TIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNF 122

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                I       ++ ++    + G  +HLT  E++++++L        T+   ++ +Y 
Sbjct: 123 KDDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMYP 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + ID  I KLRKK+   +  K  I +V+G GY   
Sbjct: 183 DNRIVSDRTIDSHIKKLRKKIKEISPEKEVIYSVYGAGYKFE 224


>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 685

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ L  ++   L+ + + V   D G  G+E  +   +D +++D+GL  + G 
Sbjct: 1   MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR    +TP+ +++   + ++K+RGL +GADDY++KP +  EL AR+RA++RR  
Sbjct: 61  SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G L ++  +  V      + LT KEY ++EL     +   ++   + HL+ 
Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             D P    +   +  LR++L  A G   +IE V+G GY L      E 
Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQA-GADGWIENVYGMGYKLSPKIDYEA 228



 Score = 89.9 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 8/124 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L ++DD  L  ++  +L+   F++          +     + D +ILD+ +    G E+
Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462

Query: 63  LRALRVAKIS------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             A+R            P+  L+   +   +V    +  DDY+ KP    EL+ RI   +
Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520

Query: 117 RRSR 120
            R+R
Sbjct: 521 ERAR 524


>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
 gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
          Length = 222

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD ++   I   L +E +NV   + G +GI+  K   +D IILD+ + ++ G+ V
Sbjct: 5   ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLDGYGV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+  L+ ++   D+++G +   DDYI+KPF+   LV R+ AI+RRS   
Sbjct: 65  CKMIRKTS-SVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + + I    L +NLD  + E+ G  I LT KE+ +++ L  +    +T+E  L+ ++  
Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +I+D  I  +RKK++       YI+TV G GY L +N
Sbjct: 184 DYYGDTRIVDAHIKNIRKKITL-----PYIKTVKGIGYTLDKN 221


>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
 gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
           denitrificans ATCC 33394]
          Length = 229

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   I   L+   F+V      +   ++ +    D ++LD  L D  G  
Sbjct: 5   RILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGVS 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +  LR    +   P+ +L+  S   DK  G   GADDY++KPF+  ELVARI A +RR+
Sbjct: 65  WIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRRA 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +    G L +N + + V   G  I  +  E++++  L        ++   L+H++
Sbjct: 125 -PSGNAWRSAGRLQLNPETQRVTADGANIECSSSEFKLLHFLMTHPERVFSRRQLLDHVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 E + +D  I +LR+ L  +AG  +YI+TV G GY     A 
Sbjct: 184 GEDACVEERTVDTQIGRLRRLLE-SAGLSDYIQTVRGSGYRFSAPAP 229


>gi|229546063|ref|ZP_04434788.1| response regulator [Enterococcus faecalis TX1322]
 gi|256852903|ref|ZP_05558273.1| response regulator [Enterococcus faecalis T8]
 gi|229308836|gb|EEN74823.1| response regulator [Enterococcus faecalis TX1322]
 gi|256711362|gb|EEU26400.1| response regulator [Enterococcus faecalis T8]
          Length = 239

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +     +            ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 237


>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
          Length = 227

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L    +     D  +  +        D I+LD       G +
Sbjct: 4   RILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGSGIK 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  L+   I  S PV +L+     +DKVRGL++GADDY++KPF+ +EL+AR++ ++RR 
Sbjct: 64  LLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +    L ++  +  V +    +++   E+ ++           ++E  LN++
Sbjct: 124 NPTSLDDELSFNKLKLDPVSHRVSLADEALNMGPTEFNLLHFFMTHPERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L++     + I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALAD---HDHLIQTVRGAGYRF 223


>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
 gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
          Length = 229

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 128/231 (55%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   L+++N+ V  T  GE+ + L + Y +D  I+DLGL  + G 
Sbjct: 1   MKLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R      P+ IL+     +DKV GL++GADDY+ KPF+ EEL AR+ A++RR+ 
Sbjct: 61  EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH++ ++  G + ++   + V      + LT  EY+  E L L    T++K     HLY 
Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  +++VFI +LR+KL         I TV G GY     A D + E
Sbjct: 181 QDFDRDSNVLEVFIRRLRQKLDPD-QDLQPITTVRGLGYRFALTA-DSSSE 229


>gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2]
          Length = 228

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 137/229 (59%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 63  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +DE
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEE--RDE 228


>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 233

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVAINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 231

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +  +I++ L  E F V     GE+ I+L      D +I+D+ +  + G   
Sbjct: 4   ILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRVDLLIIDIMMPVLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR +  
Sbjct: 64  TMKIRE-NSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYKKL 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V GDL ++ + K V + G  I LT  EY ++ LL+       + +    
Sbjct: 123 GNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSIDEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 QIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 230


>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 233

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E+
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLSGIEL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR+RA++RR++
Sbjct: 65  CRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRRAK 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  +L+  GD+ ++ + K V   G  +HL   E++++E L        ++E  L+ ++
Sbjct: 125 PEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDGVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK L N     + I TV G GY   E
Sbjct: 185 GQDVYIDERTVDVHVGRLRKAL-NRPRQPDPIRTVRGSGYSFNE 227


>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
 gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria MEX-5]
          Length = 223

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ L+   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
 gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
          Length = 231

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +E+ L ++ + V+    G D + +    +   +ILD+ +  I G +V
Sbjct: 4   VLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    + P+ ++S      DK++GL +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 64  CMKIRKE-YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   + +I    +++N     V + G  + LT  EY+++ LL+       + E  
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++  +       +   I +LR+KL +       +ETVWG GY + 
Sbjct: 183 YKEIWAEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 238

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G E     E+DA++LDL L  + G 
Sbjct: 18  MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R   +  PV IL+   ++++++ G  SGADDY+ KPF   E+V R++A++RR  
Sbjct: 78  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  GDL+++     V +    I+LT KE+Q++ L +  K+  LT+      LY 
Sbjct: 138 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     ++V+I  LRKKL     GK +I+TV G GY +
Sbjct: 198 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGYKI 233


>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 230

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+++LA  +   L  + + V     G   ++  +  E D ++LDL L  + G E
Sbjct: 4   QVLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V +L+  +   DK+ GL  GADDY++KPF+  ELVAR+ A+ RR R 
Sbjct: 64  VCRRLRTFS-DCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAMQRRPRQ 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +    G L V++ A+   + G  + LT  E+ ++ +LS R N  L++   +  
Sbjct: 123 PRGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEFDLLAVLSARPNVVLSRAELITA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      +  ++DV I  LR+KL +A     +I TV G GY +   +
Sbjct: 183 VWGEGWVGDEHLVDVHIGHLRRKLGDAPARPRFILTVRGIGYRMGPQS 230


>gi|15602079|ref|NP_245151.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720438|gb|AAK02298.1| YgiX [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 223

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+E  K   +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDALIGNGLQIGLTKSGFLVDWFQDGKTGLEAVKSAPYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R  K   PV IL+   +++++V GLQ GADDY+ KPF   E++AR++A++RR  
Sbjct: 61  DILQRWRKEKYDVPVLILTARDTLDERVMGLQKGADDYLCKPFALVEVIARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I    +  + + + V ++   + LT +EY+++EL  L K+  L++ M    LY+
Sbjct: 121 GQASPVIEHSLVCFDPNQRKVFLRQEEVALTTREYKLLELFMLNKDRVLSRRMIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR+KL     GK +I TV G GY L +N +
Sbjct: 181 WDDEVSSNALEVHIYNLRQKL-----GKQFIRTVHGVGYALGKNDE 221


>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
           himastatinicus ATCC 53653]
          Length = 246

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 21  RILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A+   PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 81  VCRRV-QARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 245


>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
 gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
           16841]
          Length = 230

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E F+V     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-NSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 123 GNAAESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 183 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 230


>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phop [Paenibacillus polymyxa SC2]
 gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus polymyxa SC2]
          Length = 237

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 127/232 (54%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D++ ++  ++L L  E + V +   G +G+E    + +D IILD+ L +I G EV
Sbjct: 5   VLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEINGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L+ +R     TP+ +++  ++  DKV GL  GA+DYI+KPF  EEL+AR+RA +R     
Sbjct: 65  LKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLEP 124

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      QS +    L +    ++V  +G RI LT KE+ ++  L   KN  L ++
Sbjct: 125 AATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  ++      +  ++DV+I  +RKK+ +    K  I+TV G GY +RE 
Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKI-DHGYKKKLIKTVRGVGYCIREE 235


>gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
 gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator
           protein [Pseudoalteromonas tunicata D2]
          Length = 227

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 134/223 (60%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +E  L++E + +     G++G+EL +  +F  I+LD+ L  + G 
Sbjct: 1   MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +ALR+ K   P+ +L+ M   +D ++GL+ GADDY++KPF  +EL+ARI A+ RR+ 
Sbjct: 61  EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  G L  +  +  V +    I LT KE  ++ELL       L++E  L+++
Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   ++DV+I KLRKKL+  + G++ IET  G GY L
Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223


>gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 229

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +++ L    +   +   GE  + L +   F  I+LD+ L DI GFE
Sbjct: 3   KILVIEDDVNIAKFVKINLDKY-YETEIVHEGERALYLLERERFSVIVLDIMLPDISGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  K++TPV IL+  S   DK+ GL+ GADDYI+KPFN  ELVAR+RA++RR   
Sbjct: 62  LLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              S      +   ++ ++L      V+G  + LT +E+Q++++L   +   + +E  + 
Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV I +LR+K+        YI T WG GY  
Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGYYF 226


>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
 gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum 3TCK]
          Length = 229

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +D +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKMVQTVRGAGYRF 225


>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
 gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 233

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKSA 233


>gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82]
 gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 254

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I  P+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ +        YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEENPARARYIQTVWGVGYVFVPDGAE 254


>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 244

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGFE 61
           IL++ED++A+A  +   L  E + V V D G   ++  +    D IILD+ L  DI G E
Sbjct: 7   ILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R A    P+ +L+    + D+V GL +GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 67  VCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQER 126

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +    DL+++  ++       RI LT +EY+++ L     N  LT+++ +
Sbjct: 127 RRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVIM 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++      E  +++V++  LR+ L  A G    ++TV G GY LR   ++
Sbjct: 187 ERVWGYDFPGESNVLEVYVSNLRRHLE-AGGEPRLLQTVRGAGYALRLPTEE 237


>gi|229586314|ref|YP_002844815.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
 gi|228021364|gb|ACP53072.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5]
          Length = 237

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 132/223 (59%), Positives = 167/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS +     K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLMDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|84394086|ref|ZP_00992821.1| putative two-component response regulator [Vibrio splendidus 12B01]
 gi|84375277|gb|EAP92189.1| putative two-component response regulator [Vibrio splendidus 12B01]
          Length = 243

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +  NV   +  E   +L    +FD ++LD GL D  G + 
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CRMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K+ 
Sbjct: 132 ESVTQEAMTTESIMNFGGLIIQPERHQVSLNNRDVPLTATEFTLLHFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 192 LLDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
 gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis
           ATCC 19624]
          Length = 235

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 1/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  + + L++E F     D G       + +  D I+LDL L  + G  
Sbjct: 6   RILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+      D++ GL+ GADDY+ KP+N  E+VAR++A +RR+  
Sbjct: 66  VCRQLRAF-CHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L ++         G  + LT  E++++  L+ +    L++   L+HL+D 
Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHDD 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 + ID  +  LR+KL  AA G++ I +V+G GY   E   
Sbjct: 185 GRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEEPPP 229


>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 225

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD  +   ++  L    + V   + G+ GI L +   FD +ILD+ +  + G++V
Sbjct: 5   ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLDGWQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      PV +L+    +ED+V+GL  GADDY+ KPF   EL+ARIRA++RRS   
Sbjct: 65  CGQIRE-YYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGKT 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DLS++   + V     +++ T +EY++++L        L KE+ +  ++ 
Sbjct: 124 EAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + E  +++V+I  LR KL  A G K  I TV G GYVL+E
Sbjct: 184 YDYQGESNVLEVYIVMLRNKLE-ACGEKRLIHTVRGAGYVLKE 225


>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 240

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLIED+K ++  ++  L+ E++ V+    G++G+E+ +  + D ++LDL +  I G 
Sbjct: 7   IKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGE 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  K + PV +++   S +D V GL+ GADDY++KPF+ +EL+ RI+ ++RR  
Sbjct: 67  DLIKEIR-NKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIE 125

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L+       G  I LT  E+Q+I+ L    N   T+E  +
Sbjct: 126 KYNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEII 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +     +YI+T++G GY 
Sbjct: 186 EITFGFDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYK 230


>gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638]
 gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 220

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + +V GDL++NL  + V    H + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L 
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLE 217


>gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7]
 gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7]
          Length = 235

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+I+D++ +   I+ +L  E  + V       DG+        D +ILD+ L D  G+
Sbjct: 7   KVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIMLPDGEGY 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+  LS      DK+ GL  G DDYI+KPF+ +++  R++A +RRS 
Sbjct: 67  DICKQIRDIS-HVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKAQLRRSS 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +LI  G   ++     +   G  I LT KE  ++       N  ++KE    
Sbjct: 126 YLQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          + V I +LR+K+       +++ TV G GY   
Sbjct: 186 AVWGEDFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKFV 231


>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
          Length = 219

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R  +   PV ILS   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+++NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +D+     ++V +  LR+KL     GK+ I+TV G GY L E
Sbjct: 181 WQDDTSSNTLEVHMHNLRRKL-----GKDRIKTVRGVGYRLEE 218


>gi|332993185|gb|AEF03240.1| two component transcriptional regulator [Alteromonas sp. SN2]
          Length = 237

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 60/233 (25%), Positives = 110/233 (47%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A+ + + L      +     G+  +E     EF  +ILD+ L  + G +
Sbjct: 4   KILIVEDDQDIANLMRVNLLELGVEIEHQTDGKVALECALSDEFAIVILDVMLPSMSGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R A     + +L+  +S  D+V GL+ GADDY++KPF+  EL AR+R+ +R+   
Sbjct: 64  ICRKVRDALPMQSIIMLTSKTSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKYHV 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                       + +  G L ++     V +    + LT  E++++  L+       ++ 
Sbjct: 124 VQQTQTTQQQIDTPLKLGRLVIDQRNHQVFLSEEELVLTATEFELLHHLASHPGQVFSRS 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L  ++          ++  I +LR KL N A     ++TVWG GY      
Sbjct: 184 QLLESVWGYHHSGYEHTVNSHINRLRSKLENDATAPQIVQTVWGVGYKFNPQG 236


>gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1]
          Length = 239

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILGVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 250

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   ILL++D++ +   + L LK ENF +V     G + + L K + FD I+LD+ L D
Sbjct: 12  MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I GFE+ R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +
Sbjct: 72  IDGFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQL 130

Query: 117 RRSR------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR +          S +     S+      + V G  +H T KE +++  L    N   T
Sbjct: 131 RRQQMLIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFT 190

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            E     ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 191 AEQLYEQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248


>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 233

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKSGISF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKSA 233


>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
 gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
           29176]
          Length = 225

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +   L  E +NV   + G + +++  +  +   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPRMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R +    P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR+ 
Sbjct: 65  QVCREIRESS-KVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTL 123

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A  ++  G ++++  A  V++ G  I L+ KE++++      +   L++E  LN+++
Sbjct: 124 GSDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     + + ID  + KLR KL +      YI T+WG GY  
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG---EYIRTIWGMGYKF 222


>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 229

 Score =  264 bits (676), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++   + + ++V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQNIR-DKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++L+++ V  +   I LT KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +   +   I K+R K        N+I TVWG GY   
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225


>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 243

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + L L+ E + VY  D G D + L      D I+LD+ L  + G +
Sbjct: 5   KILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQLNGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + PV  +S  S   D + GL  G DDY++KPF+  +LVAR++A +RR   
Sbjct: 65  VCQQIREI-TAVPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRRQSL 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++         +V   L ++L A+TV V    + L+ KE++++ LL+ + N        
Sbjct: 124 QSEQRDKPVRDQLVFDGLIIDLTARTVRVGDQYVSLSVKEFELLALLATQPNRAFQLANL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              ++      + + + V +  LRKK+        +I T+ G GY       +E
Sbjct: 184 YEAVWGVNSIGDTRTLMVHMSNLRKKIEPDPTNPRWIVTLRGVGYKFNVEEGNE 237


>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
 gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
          Length = 241

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 14/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   L SE +N  +T  G   + +   Y+ D I++D+ L  + G E 
Sbjct: 14  VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +  A+   PV +L+      DKV GL +GADDY++KPF+  ELVAR +A++RR    
Sbjct: 74  TKRITAARP-VPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++    L+++   + V + G  +HLT  E+ ++  L+ +    LT+E  
Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  +  LR KL     G   I TV G GY     A
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSEMIRTVHGVGYAFEPPA 238


>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  264 bits (676), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G   +   + +  DA+ILD+ L D+ G  
Sbjct: 21  RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLA 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   S+ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 81  VLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGT 140

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S +V GDL ++ D+  V      IHLT  E++++  L       L+K   L+ +
Sbjct: 141 ASVRSESTLVVGDLVLDEDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  +++++I  LRKK+   AG    I T  G GY+++ 
Sbjct: 201 WNYDFGGQANVVELYISYLRKKI--DAGRTPMIHTRRGAGYLIKP 243


>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
 gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 263

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 38  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 98  VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 156

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 157 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 216

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 217 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 263


>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 229

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +       +   +ILD+ +  + G
Sbjct: 1   MKILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV+R +R      PV ILS  +   DK++GL  GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIREVRKES-QIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRA 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + +    I  G L +  D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 EHNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+ +A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227


>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 230

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea
           psychrophila LSv54]
 gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family)
           [Desulfotalea psychrophila LSv54]
          Length = 224

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  +A  I+  L+   F V     G +G+       + A I+D+ L +  G 
Sbjct: 1   MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R A   TPV ILS   S++D+++GLQ G DDY+ KPF+  EL+ R++A++RR +
Sbjct: 61  SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H  Q+ +  G L ++L  + V   G +I L  KEY ++  ++    T L+K   L  +Y
Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P+  ++DV +C+LR K+ +   G+  I+T+ G GYVLR
Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKI-DKGFGQQLIQTIRGVGYVLR 222


>gi|257870747|ref|ZP_05650400.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
 gi|257804911|gb|EEV33733.1| two component transcriptional regulator [Enterococcus gallinarum
           EG2]
          Length = 232

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IEDD+ ++   +  L+ E + V++ + G  G       ++  I+LD+ L  + G E
Sbjct: 4   RVLIIEDDEDISMIEKDFLEMEGYEVHIVNDGCVGYHEALTEKYQLILLDVMLPGMDGHE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           + R +R  K+  P+ +++  S   +K+RGL  GADDYISKPF+  ELVAR++A       
Sbjct: 64  ICRNIR-DKVDIPIIMVTAKSEELEKLRGLGIGADDYISKPFSPTELVARVKANIAQYNR 122

Query: 116 VRRSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++R +      S I  G + +N     V V G  +    +EY+++  L        +KE 
Sbjct: 123 IKRGQQTETVSSEIELGGIRINSQTHRVYVDGIEVDCKHREYELLLFLMENPEIVFSKEQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++       ++ + V I +LR+K+        YI+TVWG GY  +
Sbjct: 183 LYEKIWGMEALGNIRTVAVHINRLREKVEEDPTNPQYIQTVWGAGYRFK 231


>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 254

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F +Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 227

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  ++  ++  L  ENF     + G  G++   F++ D IILD+ L  + G +
Sbjct: 3   KILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIMLPGLNGIQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+ + + E+   GL SGADDY+ KPF   EL AR+R+++RR   
Sbjct: 63  VCSKIRETS-QVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + +L    DL ++ D KTV   GH I LT  EY+++ L  +      ++   L  +
Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E    ++DV++  LRKKL    G    I TV G GYV+RE 
Sbjct: 182 WGIDFESGTNVVDVYVNYLRKKLMQ-FGDSKLIHTVIGMGYVMREE 226


>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
 gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 223

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++V +   G DG+       FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR     TPV  L+    I D+++GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLRKE-ADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   DL +++  + V   G RI LT KE+ ++ L +  ++  L++ +  + ++D
Sbjct: 120 SREEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV + +LR K+ +       I +V G GY  
Sbjct: 180 MNFDSDTNVVDVAVRRLRLKI-DDPFQLKLIHSVRGIGYRF 219


>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
          Length = 227

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++A      L+  +F V V   GE G+++    ++D IILD+ L  + GFE
Sbjct: 3   RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R  K   P+ ++S      DK+RGL  GADDYI+KPF+  ELVAR++A + R   
Sbjct: 63  ICKQIRAIK-DIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  +    +S++  A+ V +    I  T K   ++       N  L KE   
Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTK--DLLTFFVTNPNQVLNKEQLF 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + V I KLR+K+        YIETVWG GY  
Sbjct: 180 ERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 225


>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
 gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
 gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
 gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 240

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 120/238 (50%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G EV
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARIRA  R ++  
Sbjct: 64  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPA 122

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 123 AEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240


>gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 227

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL++ED++ +   +   L+ E +NVY T  G DGIEL K  +F  +ILDL L DI G
Sbjct: 1   MKNILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLMLPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV R LR       + IL+   +++D++ GL  GAD+Y+ KP +  EL AR+ A+ RR 
Sbjct: 61  EEVCRILRRIS-DVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRV 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    +    G+L +  D + V ++  +I LT  E+ ++  L L K   L++E  +  +
Sbjct: 120 FKDENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +   + IDV I  +RKK+        YI TV   GY  
Sbjct: 180 FGLDFDGFDRTIDVHIKNIRKKIEEDTKKPKYIITVTKLGYKF 222


>gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 224

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   +D +ILD+ L +I G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNLPEIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLRAES-ATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDNKLIHTLRGVGYVLE 221


>gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
 gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae
           73]
          Length = 222

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +K   +       GEDG  L     +DA+ILD+GL+ + G 
Sbjct: 1   MRILIVEDDRDLNHQLAKAVKDAGYVSDSAFNGEDGYFLGSTEPYDAVILDIGLSRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+   R    S P+ +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS 
Sbjct: 61  QVVERWRKEGYSMPILMLTARDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++     V V G  I LT  E++++  L    +  +++   + HLYD
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFVDGQLIKLTSYEFRLLAYLMHHCDKVVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +   I+VFI +LRKKL   +     IETV G GY ++
Sbjct: 181 QDFNKDSNTIEVFIRRLRKKLGVDS-----IETVRGLGYRIK 217


>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 240

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ LA  +   L    F+      G   ++  + +  D ++LDLGL ++ G E
Sbjct: 14  RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R       + +L+   S +DK+ GL  GADDYI+KPF+  ELV R+ A++RR R 
Sbjct: 74  VCRRIRTFS-DCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRT 132

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + ++ GDL ++  A  V V    + LT  E++++  L+LR+   LT+   + 
Sbjct: 133 STTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRRGQALTRHDLVT 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++D     + +I+DV I  LR+KL     G+ +I+TV G GY 
Sbjct: 193 EVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236


>gi|210622429|ref|ZP_03293161.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
 gi|210154245|gb|EEA85251.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
          Length = 239

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 62/235 (26%), Positives = 114/235 (48%), Gaps = 16/235 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A ++E+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G   
Sbjct: 6   ILVVEDEKEIAEAVEIYLLNQGYNVFKAFNGMEGLKVLENEEIHLAIVDIMMPVMDGITF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
               R    + P+ +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMKARENH-NFPIIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124

Query: 120 -----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                          +++   G L +N D K V V G+ + LT  E++++ LL       
Sbjct: 125 MNIQKASSTEVEAVNENIYTIGGLELNDDTKEVSVDGNPVRLTPIEFKILGLLIKNPGRV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 185 FPAEEIYERVWN-EAAINTDTVMVHVRNIREKIELDPKNPRYLKVVWGVGYKIEK 238


>gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114]
 gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component
           regulatory system with EnvZ [Vibrio fischeri ES114]
          Length = 239

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      +I  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSAEDKMIEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   +  +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEEDPSRPRYIQTVWGLGYVFVPDGAE 238


>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED+ ++A  ++  L+ EN+ V++++ GE+G++  K  E D I+LD  L D+ G E
Sbjct: 4   KIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R+L+  K     P+ +L+     EDKV GL +GADDY+ KPF+  ELVARI A++RR 
Sbjct: 64  ICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  A +  +   DL V+   K V     +I L   EY++I           ++E  L ++
Sbjct: 124 KPQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E++ +DV I +LRK + N  G K+ I TV   GY L
Sbjct: 184 WLNSINVELRTVDVHIRRLRKAI-NLPGKKDLIRTVRSTGYSL 225


>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   +      ENF V+V   G+ G+E     E D IILDL L    G +
Sbjct: 5   KILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R L+      P+ ILS  +   D+++GL+ GADDY++KPF+ +ELV R++ +++R + 
Sbjct: 65  ICRQLKP-HNKIPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKRINN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL +N + + V+V+   I L  KE+ ++  L+    T  ++E  L  ++D
Sbjct: 124 DQDQNELSFPDLIINKEQRLVKVKKEEIALAPKEFDLLWQLASSPKTVFSREKLLELVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++ +D  I  +R KL    G   Y++TVWG GY  
Sbjct: 184 FDYFGGIRTVDTHIKSIRNKLGAEVGN--YVQTVWGIGYKF 222


>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
 gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 240

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    + V+    G+ G+++    E D   I+LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            EV + +R +K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q+      +  G L+V  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
 gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
           sp. MED105]
          Length = 235

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I + L      V      +    L      D ++LD  L    G + 
Sbjct: 5   ILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKTGIQF 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              LR        PV +L+  +  +DKV GL++GADDYI+KPF+ +EL+ARI+A++RR  
Sbjct: 65  AHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++    L ++     +      I +   E++++           ++   L+ ++
Sbjct: 125 PQLTDDIVEVHGLKLDPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHSRTQLLDQVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR+ L   +G    IETV G GY  
Sbjct: 185 GDHVFVEERTVDVHIRRLRQAL-TISGHDRLIETVRGAGYRF 225


>gi|319406904|emb|CBI80539.1| two-component response regulator [Bartonella sp. 1-1C]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           V   G+ G  L +   +D +I+D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHTADVAYDGDTGYTLAETVNYDVMIIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY++KPF   EL+AR+  + RR  
Sbjct: 61  SIITELRAKGIKTPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGGKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226


>gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
 gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family
           [Lutiella nitroferrum 2002]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L+  +   L +  F       G   +   +    D I+LDL L    G ++
Sbjct: 10  VLVVEDEPKLSRLLADYLAAAGFETACLADGLAVVPEVRRRLPDLILLDLMLPGRDGLDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +++      D++ GL+ GADDYI KP++  E+VAR++AI+RRS+ H
Sbjct: 70  CRELRAFS-DVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARVKAILRRSQRH 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                  G L+++ +      QG R+ LT  E++++  L+       +++  L+HLY   
Sbjct: 129 GALPADAG-LTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQLLDHLYADH 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  AA  +  I +V+G GY L 
Sbjct: 188 RVVTDRTVDSHIKNLRRKLEQAAPQQEMIRSVYGVGYKLE 227


>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 225

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V VTD G  G EL     +D +ILD  L + PG 
Sbjct: 1   MKILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ +ALR    +TPV  L+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL ++ D +    QG  ++L+ KE Q++          LT E     
Sbjct: 121 HLDPTPSTKLKIADLELDRDNQVAYRQGRGVNLSDKEVQLLSYFMENPGQLLTHEQIYQQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+D  ++P   ++   I  LR+K+         I TV+G+GY  
Sbjct: 181 LWDQTEQPNSNVVAALIRLLRRKIEAEGELP-LIHTVYGKGYRF 223


>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 229

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   +     +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  +     P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 254

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ IL+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2]
 gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family
           [Thermotoga sp. RQ2]
          Length = 223

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 92/228 (40%), Positives = 135/228 (59%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L+   G+
Sbjct: 1   MRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+++R   ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  EILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL ++   K     G  I LT KEYQ++E L + KN  +TKE    HL+ 
Sbjct: 121 ESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             DE    ++   I  LRKK  +    K  I TV G GYV    A+DE
Sbjct: 181 FDDEVFSDVLRSHIKNLRKK-VDKGFKKKIIHTVRGIGYV----ARDE 223


>gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 115/221 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  + + V +        +     E+D +ILD+ L ++ G 
Sbjct: 1   MRILLVEDDLPLAETLAEALSDQLYTVDIATDASLAWDYASRLEYDLVILDVMLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  R      P+ +++   +I DK+ GL +GADDY+ KP +  EL AR+RA++RR  
Sbjct: 61  TLCQKWRSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++  G + ++     V      + LT KEY ++ELL       L++ M ++ ++ 
Sbjct: 121 ATCQPVLEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               PE   + V +  LR+KL +A    + IETV G GY L
Sbjct: 181 LESPPEEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221


>gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator
           [Burkholderia ambifaria AMMD]
 gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria AMMD]
          Length = 223

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ L+   DL ++L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
 gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Antiqua]
 gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Nepal516]
 gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
           Pestoides F]
 gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
 gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis KIM 10]
 gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis biovar Microtus str. 91001]
 gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
 gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
 gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Nepal516]
 gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis Pestoides A]
 gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D106004]
 gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis D182038]
 gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
           pestis Z176003]
 gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 239

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 74  CREIRRFS-DIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L +N        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
 gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 90/226 (39%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L+ 
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
 gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
           Broad-1]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L++ + +V     GE  +        D ++LDL L  I G E
Sbjct: 3   RVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR A    P+ +L+ + S  D++ GL+ GADDY+ KPF+  ELV R+ ++++R+  
Sbjct: 63  VCRRLRQAG-EVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTGH 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +V+ G + V+ D +     G  + LT +E+ ++  L        T+E  L H++ 
Sbjct: 122 SGEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +   + V + +LR+K+ +       + TVWG GY    
Sbjct: 182 WT-IGDRSTVTVHVRRLREKIESDPTRPERLVTVWGVGYRWEP 223


>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
 gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
           F0254]
          Length = 200

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 82/200 (41%), Positives = 125/200 (62%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL ED+  L + +   LK   ++V     GE+ ++  ++ E+D +ILD+ +  + GF
Sbjct: 1   MKILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR     T V +L+   S +DKV+GL  GADDYI KPF+  EL+ARIRA+VRR  
Sbjct: 61  EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + +V GDL ++   K+V   G +I LTGKEY+++E L   KN  L+++    H++D
Sbjct: 121 GNSSNKLVIGDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKK 200
              E +  IIDV I  +RKK
Sbjct: 181 FDYEGDSNIIDVLIKNIRKK 200


>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
           serovar Dublin]
          Length = 248

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 23  MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A  S P   L+   S+ED+V+GL++GA+DY+ KPF+  EL+ R+RA +R+  
Sbjct: 83  QVLRALRTAHQS-PFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHV 141

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 142 P-VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 201 INFDSETNTVDVAIRRLRAKV-DEPFEKKLIMTVRGMGYRLQ 241


>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 117/220 (53%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++   L+++++ V+    G + +        D I+LD+ +  + G  V
Sbjct: 10  LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVMMPALDGLAV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR A   TP+  L+  ++ +D++ GL +GADDY+ KP++  EL ARIRA++RR+R  
Sbjct: 70  CRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTRDV 129

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   DL+++   +        I  +  E+ ++ LL       LT+E+  + ++   
Sbjct: 130 GGDRLAFADLTLDEATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWGYD 189

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P    +DV++  LR+KL    G    + TV G GY LR
Sbjct: 190 FGPSSNSVDVYVRYLRRKLEAD-GEPRLVHTVRGIGYQLR 228


>gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
          Length = 235

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+D+ ++A  +  M     +     + G +G+ + +    D +I+D+ +  + GF 
Sbjct: 3   KILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R   I+ PV  LS    I DK  G Q+G DDY+ KPF+  EL+  I A +RR+  
Sbjct: 63  TCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRASM 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A        ++  G   ++     V   G R+ LT KE+++   L+      L+KE  +
Sbjct: 123 AAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQLV 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +      E   I VFI KLR+K+ +       I+TVWG GY      ++
Sbjct: 183 EAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGRE 234


>gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia MC0-3]
 gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia MC0-3]
          Length = 223

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|86146719|ref|ZP_01065040.1| putative two-component response regulator [Vibrio sp. MED222]
 gi|85835566|gb|EAQ53703.1| putative two-component response regulator [Vibrio sp. MED222]
          Length = 243

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +  +V   +  E    L    +FD ++LD GL D  G + 
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHHVERANTIEKAQGLYLDGQFDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CRMLRQQEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHV 131

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K+ 
Sbjct: 132 ESATQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 192 LLEHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
 gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola batsensis HTCC2597]
          Length = 228

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V     GE+ + L      D I+LD  L  + G EV
Sbjct: 7   VLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIEV 66

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R      P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 67  CRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRTR 126

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    + ++ +   V  +G  + L   E++++     +     ++E  L+ ++
Sbjct: 127 PSTVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 187 GRDIYVDTRTVDVHIGRLRKALCQ-FGGDDPLRTVRGAGYAL 227


>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 229

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-NTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 224

 Score =  264 bits (675), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIPGF 60
           IL++EDDK ++  IEL L    F       G + I++      D   ++LD+ L    G+
Sbjct: 4   ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVF-NNTPDIGLVLLDIMLPQFNGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV  L+      D V GL  GADDYI+KPF  +EL+ARI+A +R+  
Sbjct: 63  EVLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKKA 122

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DLS++LD   V   G  I L+  E+ ++  L L      ++E  L+ ++
Sbjct: 123 AVSPRNRVAFEDLSIDLDTFMVSRGGESIELSKTEFDLLHYLVLNHGLVQSREQILDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+DV+I  LR K+ +    K  I+TV GRGYV++
Sbjct: 183 GFDYFGNDNIVDVYIKYLRDKI-DKPFEKKLIQTVRGRGYVIK 224


>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
 gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
          Length = 229

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+   + L L  +N+ V   +  +  +   +  +   I+LD  L    G  
Sbjct: 4   KILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEE-QPQLILLDWMLPGRSGIM 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +  L+  + +   P+ +L+  S+ ED +  L +GADDYI+KPF+ + L+ARI A+ RRS
Sbjct: 63  FIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   +L ++  A+ V V+   + L+  EY+++  L        ++E  LNH++
Sbjct: 123 YDPPSQIVSFENLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLNHIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +D +I +LR+ L        Y++TV G GY    + +D
Sbjct: 183 GDDIYVEDRTVDSYIRRLRRSLEP-FQADRYVQTVRGFGYRFSNHFQD 229


>gi|262370731|ref|ZP_06064056.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
 gi|262314531|gb|EEY95573.1| transcriptional activator protein CusR [Acinetobacter johnsonii
           SH046]
          Length = 226

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++     ++  L    +       G  G       E+D IILD+ L  + G+
Sbjct: 1   MRILLVEDEQKTGDYLKQGLSEAGYITDWVTDGLTGKHQALSEEYDLIILDVMLPGLSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R +  S P+  L+    IED+V+GL+ GADDY+ KPF   EL+ARI+ ++RR +
Sbjct: 61  NIINDIRSSGKSMPILFLTARDQIEDRVKGLELGADDYLVKPFAFAELLARIKTLLRRGQ 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + I+   DL ++L  + V   G RI LT KE+ ++EL   R+   L + +  + ++
Sbjct: 121 QREDNNIIKIADLELDLRKRRVTRAGQRIDLTAKEFALMELFMRRRGEILPRALIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +++V I +LR K+ +       I+ + G GYVL    +DE
Sbjct: 181 DMNFDSDTNVVEVAIKRLRNKVDSNF-TPKLIQNIRGMGYVLE--VEDE 226


>gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
 gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP
           102972]
          Length = 240

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDPLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        +++  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSADDTVVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1467]
          Length = 229

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ +       + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR      P+ +L+  ++  DK++GL +GADDY+++PFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 267

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 42  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 101

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 102 VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 160

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 161 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 220

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 221 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 267


>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 246

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 118/234 (50%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD A+   I   L+   +++     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR        PV +LS +   +DKV G  +GADDY++KPF   E++AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +        + + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAICFENTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   + ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPSSEQ 236


>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 228

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 8   ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ IL+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 68  CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 127 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 233

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V V D G  G E      +D +ILD  L    G 
Sbjct: 1   MKILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  AICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPS 120

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                        + +   DL ++ + +    +G  I L+ KE Q++E L       LT 
Sbjct: 121 ILETGSSNFSGDSNRLQVADLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLTH 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E    +L+   ++P   ++   I  LR+K+  A      I TV+G+GY L E +
Sbjct: 181 EQIHQYLWPDGEKPSSNVLAAQIRLLRRKIEAAGDLP-LIHTVYGKGYRLGEGS 233


>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 236

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ LA +I   L+   F V +   GE G+   +  ++DAI+LDL L  + G 
Sbjct: 1   MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A   TP+ IL+     E +  GL  GADDY+ KPF+ + L+AR+ A++RR+ 
Sbjct: 61  EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V GDL ++   +TV      I LT +E+ ++E L     +T +K   L+H++ 
Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E  +++V++  LR+K+ +   G   I TV G GY++ + 
Sbjct: 181 ADFDREPNVVEVYVGYLRRKI-DQPFGTGSIRTVRGHGYLMGDE 223


>gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
 gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
           30120]
          Length = 239

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L        I+LDL L    G  
Sbjct: 6   KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +      + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSQDDAVITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSYPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 5   ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ IL+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 65  CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 124 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 184 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 222


>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 228

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I+ G L+++L+++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +   +   I K+R K    +   N+I TVWG GY   
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
 gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
          Length = 227

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   +    G +  ++    + D ++LD+ +    GF V
Sbjct: 4   VLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    + P+  L+   + +DKV+GL  G DDYI KPF  +ELVARI A++RRS  +
Sbjct: 64  CQSIRAMS-NVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V G + ++  A+ V V G  I LT KE++++ L         T+E  L  +
Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D       + +D  I  LR KL   A    +I+TVWG GY    
Sbjct: 183 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGYRFDP 225


>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
 gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
           profundum SS9]
          Length = 229

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +D +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKMVQTVRGAGYRF 225


>gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 220

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + L L SEN+         +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLRQGLTLALTSENYACDCASTAAEAQSLIQTSQYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   IS PV IL+   ++ED+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I  G+L +NL ++   +    + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNQISVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+     ++V +  LR+KL     GK  I TV G GY L 
Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKEVIRTVRGIGYRLE 217


>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
 gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   P+ +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTSLDDVIDVQGLKLDPVSHRVTSNDKPLEMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEEH-GHDKLVQTVRGAGYRF 225


>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
 gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Thermoanaerobacter tengcongensis
           MB4]
          Length = 224

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 128/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           ++L+IED++ +   ++  L++  + V   + G++G++L     +   I+LD+ L DI G+
Sbjct: 4   KVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGW 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R      PV +++      DK+ G + GADDY+ KPF+  E+VAR++AI+ R+ 
Sbjct: 64  SLLKTIRETS-KVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTY 122

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G           + +++ ++ V V G +I LT KE+ +++LL   K   +++E  LN ++
Sbjct: 123 GSQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++ +D  I +LR+KL      +N I+TVWG GY L  +
Sbjct: 183 GYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224


>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR++A++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  + V GDL V+  A+ V +      LT KE+ ++E L +R    ++K   L H+
Sbjct: 121 QGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  I++V++  LR+KL         I TV G GY L 
Sbjct: 181 WDFAYDGDPNIVEVYVSALRRKLRAG-----LIRTVRGAGYRLE 219


>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 222


>gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A   +  L + +F V + + G+ G+E+    E+D I+LDL L  + G+E
Sbjct: 3   RILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLMLPSMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R A  + P+ I+S      DK+RG   GADDYI KPF   ELVAR++A + R   
Sbjct: 63  VCRRIREAS-NVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLSRYER 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G  +  +    + +   ++ V V    +  T KEY ++  L    N    KE 
Sbjct: 122 LVGQGHNGQHRDELRLNGIRIEKQSRRVFVNEREVSFTAKEYDLLFYLVTHPNRVFRKED 181

Query: 174 FLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++           + V I KLR+K+        Y+ET+WG GY  
Sbjct: 182 LFEQIWGMDAIGSDHATVTVHISKLREKIERDPSKPQYVETIWGVGYRF 230


>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
 gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
 gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
           Temecula1]
 gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Dixon]
 gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Xylella fastidiosa Ann-1]
 gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
 gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
           [Xylella fastidiosa M23]
 gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 227

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L  ++   LK E F V     GE+GI + +   FD  I+DLGL  + G 
Sbjct: 1   MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ALR      PV IL+  SS + KV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  DLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y 
Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL +A G    IETV GRGY  
Sbjct: 181 QDFDRDSNVLEVFIGRLRKKL-DADGDLKPIETVRGRGYRF 220


>gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 224

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
 gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
          Length = 247

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 20  KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 80  TLEEIRKE-YSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++         L  KE+ ++   +  +   LTK+    
Sbjct: 139 FNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 199 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247


>gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
 gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16]
          Length = 219

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +      +++AI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSEDWEAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R   I+TP+ ILS   ++  +V GL +GADDY +KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKSIRDENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  QG  I LT  E++++          +++   + H+Y 
Sbjct: 121 GNASPVIQNGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKVIKTVRGLGYQL 216


>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
 gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
          Length = 230

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 112/226 (49%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   +        +    L      D I+LD  L    G E+
Sbjct: 6   ILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +L+     ++K+ GL+SGADDYI+KPF+  EL+AR++A++RRS 
Sbjct: 66  ARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRRST 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +  G L+++  +  V  Q  ++ L   EY+M++     ++   ++   L+ ++
Sbjct: 126 PAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + + +DV I +LRK L         I+TV G GY    + 
Sbjct: 186 GANVYLDERTVDVHIRRLRKALGTHHDH--LIQTVRGAGYRFSADP 229


>gi|313623681|gb|EFR93833.1| transcriptional regulatory protein SrrA [Listeria innocua FSL
           J1-023]
          Length = 228

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
            H      + ++ T    ++   + +  Q   +  LT KE+ ++  L        ++E  
Sbjct: 120 NHTTTENDEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K++     K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDT--KPFLHTVWGVGYKFDET 227


>gi|317132097|ref|YP_004091411.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470076|gb|ADU26680.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 228

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A      LK   +   +   G+   +      + A+I+DL L    GF+
Sbjct: 3   KILIVEDDENIAELERDYLKLNGYRADIEPDGQKACQKALGGGYAALIIDLMLPGKNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++R +R  +   P+ ++S  +   DK+RGL  GADDY++KPF+  EL+AR+++ +RR   
Sbjct: 63  IIRDVRSTQ-EVPIIVVSAKAEDIDKIRGLDVGADDYLTKPFSPAELIARVQSHIRRYER 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++    L ++  A+ V V G  + LT KEY ++  L+   N   TKE   +
Sbjct: 122 LKGNKTQEEILSFRGLEIHHAARRVTVSGREVQLTAKEYDLLYFLASNPNIVFTKEHLFD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   D  ++  + V I ++RKK+       +YIET+WG GY  
Sbjct: 182 TIWGVDDYGDLATVPVHIQRIRKKIEKDPSNPDYIETLWGTGYRF 226


>gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
 gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL
           200]
          Length = 229

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A   +  L+   + V +   GE G++     ++D +ILD+ L  I G+E
Sbjct: 3   RILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R+ K   P+ ++S      DK++GL  GADDYI KPF+  E+VAR+ A + R   
Sbjct: 63  ICKQVRLEK-DIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               R   +  I    L ++  A+ V V G  + LTGKE+ ++  ++   N   +K+   
Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + V +  +R+K+      K+YI T+WG GY  
Sbjct: 182 ETVWGMDVIGDAATVAVHVKNIRQKIELDPFDKSYIGTIWGVGYRF 227


>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           ++L+++D+  +   ++  L  ++F V   + G   +++     +   +ILD+ +  + G+
Sbjct: 5   KVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R    + P+ +L+  +   D++ G + G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  QVCREIRGVS-NVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRRSN 123

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A   I+T G +S++  A  V+  G  + L+ KE++++      +   L++E  LN ++
Sbjct: 124 ALAPDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL       +YI+T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLG---KQGDYIKTIWGMGYKFE 223


>gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
 gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory
           protein [Synechococcus sp. PCC 7002]
          Length = 223

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL EDD+ LA  +   L+ E + + V   G D + L +   +D +I D  +  + 
Sbjct: 1   MKPHILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++   LR + I TP+ +L+    I D+V GL +GADDY++KPF+ EEL+AR+ A +RR
Sbjct: 61  GLDLCLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R      +   DLS+N   + V      I LT KE+ ++ELL       LT+E  L  +
Sbjct: 121 ARREVVDQLEFEDLSLNGITREVYRDRQLIQLTAKEFDLLELLLRHPRQVLTREQILEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  +I+V+I  LR KL  A   K  I TV   GYVL+
Sbjct: 181 WGYDFMGESNVIEVYIRALRLKLE-ATNPKRLIHTVRSVGYVLK 223


>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 233

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++   G + ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  R     + +D F+ +LR  + + A    ++ETV G GY  
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228


>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
 gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
          Length = 223

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K + + I   ++   +     D G + + + K    D +ILD+ +  + GF 
Sbjct: 3   KILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R  R    + P+ IL+     EDK++G + GADDYI+KPF+ + L+A++ A++RR   
Sbjct: 63  VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G + + + ++ V V+   I LT KE++++ L     N   ++E  LN ++ 
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  I  LRKKL       ++I T+   GY   
Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220


>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 238

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL ED++AL   +   L++  F V     G + + L +      +ILD+ +  + G E
Sbjct: 7   RILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R +  + P+ IL+ + S  DKV  L  GADDY++KPF  EEL+AR+RA +RR+  
Sbjct: 67  VCQRVRQSS-TVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTNW 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +    G+L V+L    V ++G  I L+  E+ +++ L       LT  M 
Sbjct: 126 EETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRML 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++      E + + V+I +LR KL   +    Y+ T  G GY     
Sbjct: 186 LQSIWGPEYGDEAEYLRVYINRLRHKLETDSANPRYLLTEPGVGYRFVAP 235


>gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
 gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar kurstaki str. T03a001]
          Length = 224

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 128/223 (57%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+++LA  +EL LK E + V +   G  G+       +D I+LDL L  + G EV
Sbjct: 4   ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSEALEKNYDLILLDLMLPGLNGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K +TP+ +L+   SI D+V GL SGADDY+ KPF  EEL+AR+R I RR    
Sbjct: 64  CRRLRATK-NTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEHI 122

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL + ++++T+      I LT KE++++ +     N  LT+++ L+ ++
Sbjct: 123 ENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E  I+DV++  LR KL +      YI+TV G GY+++
Sbjct: 183 GYDAIVETNIVDVYVRYLRNKLHSVDKE-EYIQTVRGAGYIMK 224


>gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 227

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V   + G  G       ++D I+LD+ L    G+
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    ST V +L+    ++DKVRGL  G DDY+ KPF+  EL+AR+R+I+RR +
Sbjct: 61  TVLKNLRRTH-STSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++L  +     G  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 TRDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +  ++D  I +LR K+ +       I TV G GYVL E    + 
Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDN-YEPKLIHTVRGMGYVLEERGPSQP 227


>gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 249

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +           G DG  L +  ++D +I+D  L  + G 
Sbjct: 19  MRLLIIEDDREAAAYLVKAFRETGHVADSAHDGLDGYALAREGDYDVLIVDRMLPKLDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   ++TP  ILS +  ++D+V+GL++G DDY+ KP+   EL+AR  A+ RR  
Sbjct: 79  SLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQA 138

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G     ++    GDL ++  +  V   G  I L  +E++++E L       +T+ M L H
Sbjct: 139 GSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLEH 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR KL         I TV G GYVLR
Sbjct: 199 VWDYHFDPQTNVIDVHVSRLRSKLDKGFPSP-IIHTVRGAGYVLR 242


>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 233

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 108/230 (46%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V     G  I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHADGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L ++A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLAKHA 233


>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
 gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
          Length = 227

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 126/225 (56%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +EL L  E + V     G  G++L      D I+LD+ L  + G E
Sbjct: 4   KILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  ++R   
Sbjct: 64  VLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKRKST 123

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             Q    +    +S++ D   V V G  + LT +E++++  L   KN  + +E  +N + 
Sbjct: 124 DRQETHKLEIHGVSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIVC 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E  IIDV+I  LR K+ +  G K  I TV G GYV+RE+
Sbjct: 184 GYEYVGETNIIDVYIRYLRTKIDDRFGIK-LITTVRGVGYVIRES 227


>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 246

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   +   L    + V     GE  +E+      D ++LD+ L  + GF V
Sbjct: 4   ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  L+ + +I ++V GL  GADDY++KPF+ +EL ARI  I+RR    
Sbjct: 64  CRRIRAESC-VPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGPA 122

Query: 123 A-----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +
Sbjct: 123 PTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVPR 182

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 183 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232


>gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1]
 gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1]
          Length = 254

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  +++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254


>gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica]
          Length = 239

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L        I+LDL L    G  
Sbjct: 6   KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR    S P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  VCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G  S+NL  + +      I LT  E+ ++++L    +  L++   
Sbjct: 126 KLLGVPTEDDAIINFGKFSLNLSTREMFQGDEHIPLTSGEFSVLKVLVSYPSVPLSRNKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+T+WG GYV   + 
Sbjct: 186 MNLALGREYSTMKRSIDVLISRLRRVIEEDPAHPRYIQTIWGLGYVFVPDG 236


>gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
 gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
          Length = 231

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L H ++  L  EN    +   G++GI   K  E+  +ILD+ +  + GF+
Sbjct: 4   KVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R      PV +L+  S    KV GL+SGADDY++KPF+ +E +AR+ +++RR   
Sbjct: 64  VLEKIRETN-RLPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRRYTN 122

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   +L+++L++++V  +   + L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNSLHEPIETLTFKELTIDLESRSVLTKNGTLELPPKEFDILVYCAQNQGKILTKQQIFE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I KLRKK+ +      YI+TV G GY   ++ 
Sbjct: 183 KVWQEPYVYDDNNIMAIISKLRKKIEDNPSSPTYIQTVKGIGYRFSKDV 231


>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
 gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
          Length = 234

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  EL+ R++A+++R +  
Sbjct: 74  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQIT 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231


>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
 gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 230

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ +D   +  +I   LK+E F       GE+ ++       D IILDL +  + G E
Sbjct: 6   HILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLMMPKLSGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR      P+ +L+      DK+ GL+ GADDYI KPF+  E+VAR++ ++RR   
Sbjct: 66  VCRTLRKT-TDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRKLP 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++    L +N+ +  + + G  +  T KE +++ LL+        +E  + ++
Sbjct: 125 QSKDTEPILKYDGLEINISSYELRLNGTPVSCTPKEVEVLYLLAAHPGQVFNREQIIQNV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I ++R+KL      K  I++++G GY   
Sbjct: 185 WGSDYFGDTRSVDTQIKRIRQKL-AGEKMKWGIKSIYGVGYKFE 227


>gi|255973028|ref|ZP_05423614.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255976067|ref|ZP_05426653.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256618840|ref|ZP_05475686.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256958749|ref|ZP_05562920.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256962146|ref|ZP_05566317.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256965344|ref|ZP_05569515.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|257078778|ref|ZP_05573139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|257082778|ref|ZP_05577139.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|257085479|ref|ZP_05579840.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|257086608|ref|ZP_05580969.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|257089665|ref|ZP_05584026.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415879|ref|ZP_05592873.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
 gi|257419081|ref|ZP_05596075.1| DNA-binding response regulator [Enterococcus faecalis T11]
 gi|255964046|gb|EET96522.1| DNA-binding response regulator [Enterococcus faecalis T1]
 gi|255968939|gb|EET99561.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis T2]
 gi|256598367|gb|EEU17543.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
           4200]
 gi|256949245|gb|EEU65877.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
 gi|256952642|gb|EEU69274.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Merz96]
 gi|256955840|gb|EEU72472.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis HIP11704]
 gi|256986808|gb|EEU74110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis JH1]
 gi|256990808|gb|EEU78110.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis E1Sol]
 gi|256993509|gb|EEU80811.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis Fly1]
 gi|256994638|gb|EEU81940.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecalis D6]
 gi|256998477|gb|EEU84997.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257157707|gb|EEU87667.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
 gi|257160909|gb|EEU90869.1| DNA-binding response regulator [Enterococcus faecalis T11]
          Length = 242

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 64  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 123

Query: 119 SRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +     +            ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 124 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 184 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 240


>gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 221

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L    F V     G +         +DA++LDLGL  +PG 
Sbjct: 1   MRVLLVEDDPLLGDGIRAGLMQAGFAVDWAKDGREAELAVSGEPYDAVVLDLGLPRLPGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R +K   P+ IL+   S+ D+V GL +GADDY+ KPF+  EL AR+RA+VRR++
Sbjct: 61  DMLRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I  G L ++   ++V + G  + L+ +E+ ++  L L     L+K      LY 
Sbjct: 121 SQIEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   ++VF+  LR+KL       + I TV G GY++ +  
Sbjct: 181 WGEEIESNAVEVFVHHLRRKL-----APDLIRTVRGVGYMIAKEP 220


>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
 gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
          Length = 240

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 14  RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR   +  PV  L+   ++EDK+ GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 74  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 133

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     + I   D+ ++ D + V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 134 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE 
Sbjct: 194 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 238


>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRKES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +++
Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 228

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 137/229 (59%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 3   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 63  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +DE
Sbjct: 183 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEE--RDE 228


>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
 gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
           15053]
          Length = 233

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD+ +  +I++ L  E + V     GE+ +++ +  + D +I+D+ +  + G  
Sbjct: 5   KILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVMMPRLDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R    + P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATLKIREQN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G +Q++   G LS+N D K V V G  + LT  EY ++ LL   +    + +  
Sbjct: 124 LGSTVSGDSQAVYEVGGLSINDDLKEVTVDGELVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 184 YENIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232


>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
 gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 232

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD ++A      L+   F+V ++  G +G+   +  EFD IILD+ L  + G E
Sbjct: 3   RILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L++++  K   PV ++S      DK++GL  GADDYI+KPF+  ELVAR++A +     
Sbjct: 63  ILKSMKEDK-DIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           I    L +  D++ V V    ++L  KE+ ++  L+   N    +E
Sbjct: 122 LKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++      +   + V I ++R+K         YIETVWG GY  R
Sbjct: 182 ELFERIWGLESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRFR 231


>gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 238

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++ED+  L   +   L++  +       G + +     +    I+LDL L    G  
Sbjct: 9   QIMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVPAVHEHSPALILLDLMLPGSDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 69  VCRELRRF-TDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++      L ++        QG  + LT  E+++++ L+ +     ++E  LN+LYD 
Sbjct: 128 PLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + ID  I  LR+KL    G K++I +V+G GY      
Sbjct: 188 YRVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWESEP 231


>gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2]
 gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2]
          Length = 235

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+  LA  ++  L  E F V     G DG+ L     +D IILD  L  I G 
Sbjct: 7   MKLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR ++  TPV +L+  + +ED+V+GLQ+GADDY+ KPF   ELVARI A++RR  
Sbjct: 67  AVLAALRQSR-QTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGL 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++   DL ++L        G R+ LT KE+ ++ LL  R+   L++    +
Sbjct: 126 QAQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELAS 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D   + E  +++V + +LR KL +A      + TV G GYVL 
Sbjct: 186 QVWDMNFDSETNVVEVAVRRLRLKL-DAPFELPLLHTVRGMGYVLE 230


>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
 gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
           A2-165]
          Length = 241

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 14  KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 74  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 133 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 193 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 241


>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 225

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     V V   G DG +L +   FD ++LD+ +  + G +
Sbjct: 3   KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI A++RRS+
Sbjct: 63  LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRRSK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +V GDL ++ + +      H + LT KEY+++E     +   L++   L H++D
Sbjct: 123 EKRTSELVCGDLILDCNTRRARRGDHEMELTVKEYRLLEHFMNNQGVVLSRVNLLKHVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    ++DV++  LR K+      K  I TV G GY++ 
Sbjct: 183 KNFDTNTNVVDVYVNYLRTKIDKDYENK-LIHTVVGLGYIME 223


>gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652]
 gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652]
          Length = 251

 Score =  264 bits (675), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 27  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 87  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 147 TPEQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251


>gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +IEDD  +   I++ L+   + V   ++ ED +   +  +    + DL L  + G   
Sbjct: 4   IYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTA 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +R +R  +     P+ IL+      DKV GL  GADDY++KPF   EL ARIR+++RRS 
Sbjct: 64  IRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRRST 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +    L++N   + V   G ++ LT KE+++++ L    N  +T++  LNH+
Sbjct: 124 RDQAESNELNQYCLNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELLNHI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +    + E + +D+ I  LR+KL    G    I+TV G GY   +  +
Sbjct: 184 WGYDYDGETRTLDMHIRTLRQKLGENGGS--CIKTVRGVGYRFIKTEE 229


>gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 258

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 119/224 (53%), Positives = 159/224 (70%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   A  + +MLK+          GE+ +EL   Y++D IILD+ L D+ G+
Sbjct: 11  MRVLLVEDDLTTARGVAMMLKASAMIADTAGTGEEALELAGLYDYDIIILDIMLPDMEGY 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR  ++ TPV ILSG+S  + KV+    GADD+I+KPF+++EL+ARI+AI+RR++
Sbjct: 71  EVVRRLRGNRVETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAK 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +Q  +  G L++NL ++ V V    +HLTGKEY ++ELL LRK   LTKE+FLNHLY 
Sbjct: 131 GFSQPTLSVGPLTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G DEPE KIIDVFICKLRKKL+ A  G   I TVWGRGYVLR+ 
Sbjct: 191 GIDEPEAKIIDVFICKLRKKLAQAGAG-ELIGTVWGRGYVLRDP 233


>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 254

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E ++V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E + V     G++ +       + D +ILD+ +  + G
Sbjct: 1   MKILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++I+RRS
Sbjct: 61  MEVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +          +  G L +N D+  V  ++   I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QMQLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +  +L++E F V   + G + + +        +ILD+ + ++ G E
Sbjct: 4   KILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R     TPV ILS   ++ DK  G     DDY+SKPF+  E+  R++A+++R R 
Sbjct: 64  FLKKIRPQ-FDTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 AQ ++  G+L +N D+  +   G  I LT +E++++ +L       L++E  L 
Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D     ++ +I+VF+ +LR+K+        Y++TVWG GY   +
Sbjct: 183 LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGYKFSK 229


>gi|29375829|ref|NP_814983.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|229550253|ref|ZP_04438978.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257422851|ref|ZP_05599841.1| two component system response regulator [Enterococcus faecalis X98]
 gi|293383171|ref|ZP_06629088.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294780111|ref|ZP_06745484.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859819|ref|ZP_07105907.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|307273452|ref|ZP_07554697.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307277615|ref|ZP_07558707.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288440|ref|ZP_07568428.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|312899351|ref|ZP_07758684.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|29343290|gb|AAO81053.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933724|gb|AAS49395.1| response regulator [Enterococcus faecalis]
 gi|229304691|gb|EEN70687.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|257164675|gb|EEU94635.1| two component system response regulator [Enterococcus faecalis X98]
 gi|291079510|gb|EFE16874.1| DNA-binding response regulator PhoP [Enterococcus faecalis R712]
 gi|294452786|gb|EFG21215.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|295112803|emb|CBL31440.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850637|gb|EFK78386.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Enterococcus faecalis TUSoD Ef11]
 gi|306500611|gb|EFM69940.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306505880|gb|EFM75058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|306509979|gb|EFM79004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|311293502|gb|EFQ72058.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315027504|gb|EFT39436.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315156001|gb|EFU00018.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0043]
 gi|315160348|gb|EFU04365.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0645]
 gi|315166770|gb|EFU10787.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315575685|gb|EFU87876.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|323480492|gb|ADX79931.1| two component system response regulator [Enterococcus faecalis 62]
 gi|327534882|gb|AEA93716.1| response regulator [Enterococcus faecalis OG1RF]
 gi|329577105|gb|EGG58578.1| transcriptional regulatory protein ResD [Enterococcus faecalis
           TX1467]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 1   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +     +            ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 121 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 237


>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 231

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/234 (33%), Positives = 118/234 (50%), Gaps = 14/234 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR   IL++EDD  +   +   L    FNV   D GE+ ++L      DA++LDL L   
Sbjct: 1   MRKPSILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGK 60

Query: 58  PGFEVLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            G EV RA+R   A    P+ +L+  S  +D V GL+ GADDY++KPF+   L+AR+ A 
Sbjct: 61  DGNEVCRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAA 120

Query: 116 VRRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +RR+             I    + ++     V V G  IHLT  E+ ++ LL+ R     
Sbjct: 121 LRRTPEPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++  ++ +         + +DV I  LRKKL +A      IETV G GY +RE
Sbjct: 181 SRQQIIDQVRGYDYSITPRAVDVQIFGLRKKLGSAGTC---IETVRGIGYRIRE 231


>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
 gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
           antri DSM 16041]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+++LA  +   L+ E + V     G + + L +      I+LD  L    G  
Sbjct: 5   KILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGYDGLT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV +++  S   D    L  G DDYI+KPF  EEL+ARIR I+RR   
Sbjct: 65  VLRRIRQTS-DVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRINR 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                     G  +++L      V G  IHLT KE+ ++  L        +++  LN ++
Sbjct: 124 EQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDLLNQIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +   +DV+I  LR KL +    +N I TV G GYVL E +
Sbjct: 184 GYDFAGQTNTVDVYIRALRNKLGDY---RNLIRTVRGVGYVLGEQS 226


>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 241

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 111/220 (50%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   +   L+   F V       DG+   K    D +ILD+ L D  G  
Sbjct: 17  RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+    + D++ GL+ GADDY+ KPF   ELVARI+A++RR   
Sbjct: 77  VCREVRADS-RIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L VN   ++V +    + LT  E++++  L+  +   ++++  L+     
Sbjct: 136 DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGI 195

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   + ID+ + +LR+KL +      +I TV G GY  
Sbjct: 196 DWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235


>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 244

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  S+   L+   F+V V   G++ + L      DA++LD+ + ++ G  V
Sbjct: 21  VLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAV 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           + ALR      P+C+LS   ++ D++ GL++GADDY++KPF+  ELVAR+ A++RR+   
Sbjct: 81  VTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHS 140

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+++   + V V G R+ LT +E+ ++  L+      L+++  L  ++ 
Sbjct: 141 DPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG 200

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  + DVF+  LR+KL    G    I TV G GYVLR
Sbjct: 201 YDFDVDTNVADVFVSYLRRKLERE-GLPRVIHTVRGIGYVLR 241


>gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
 gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str.
           Wilmington]
          Length = 237

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  +A+ IE+ L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MKVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKIGIYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G +IHLT KEY ++ELL +R+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
 gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa
           PAO1]
 gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719]
 gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192]
 gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa
           LESB58]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 137/229 (59%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +DE
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEE--RDE 226


>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 233

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ L   +   L+SE + V     G++     +    D +ILD  L  + G E+
Sbjct: 5   ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLSGIEL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   PV +L+      ++VRGL +GADDY+ KPF+  EL+AR+RA++RR++
Sbjct: 65  CRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRRAK 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  +L+  GD+ ++ +   V   G  +HL   E++++E L        ++E  L+ ++
Sbjct: 125 PEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDGVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + +DV + +LRK + N     + I TV G GY   E
Sbjct: 185 GQDVYIDERTVDVHVGRLRKAI-NRGRQSDPIRTVRGAGYSFNE 227


>gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A      L+  +F V +   G+ G+      +FD I+LDL L  + GF 
Sbjct: 3   KILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLMLPGVDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K  TP+ ++S      DK+RGL  GADDY+ KPF+  ELVAR++A + R   
Sbjct: 63  ICRRIREKK-ETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I    L ++ DA+ V ++G    L  KE+ ++  ++   N    KE  
Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++      +   + V + +LR+K+        YIETVWG GY  +
Sbjct: 182 FERVWGLDAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGYRFK 229


>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
          Length = 238

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ ++  +   L+ +   V ++  G D +   +    D ++LDL +  + G EV
Sbjct: 11  VLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLMMPGLDGIEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+ +    D+V GL+ GADDY++KPF+  ELV RIR+++RR+   
Sbjct: 71  CRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAPQ 130

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GDL+ + D +  E  G  + LT +E+ ++  L        ++   L+ ++
Sbjct: 131 DRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             R   +   + V + +LR+K+ +       I TVWG GY    +
Sbjct: 191 GWRF-GDQSTVTVHVRRLREKIEDHPAQPRRIVTVWGVGYRYEPS 234


>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARQ-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 116/231 (50%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 21  RVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRV-QARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 245


>gi|222148026|ref|YP_002548983.1| two component response regulator [Agrobacterium vitis S4]
 gi|221735014|gb|ACM35977.1| two component response regulator [Agrobacterium vitis S4]
          Length = 252

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D +I+D  L    G 
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREAGIMADHASDGEAGLFMGCENTYDVMIIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I+TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 88  SVISELRKRSINTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L H++
Sbjct: 148 TPEQDMIYRVGDLELDRLSHEVRRAGKEILLQPREFRLLEYLMKNAGQVVTRTMLLEHVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++TV G GY++++ +
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFDRP-LLKTVRGAGYMIKDES 252


>gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
 gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++  L+    +V +   G DG+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR +K +TPV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLQRLRASK-ATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  GDL +++  + V     RI LT +E+ ++ LL+ R+   L++    ++++D
Sbjct: 120 PRESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  ++DV I +LR K+ +       + TV G GYVL 
Sbjct: 180 MNFDSDTNVVDVAIRRLRVKI-DDEFPVKLVHTVRGVGYVLE 220


>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 240

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A+ +   L ++ FNV       D + +      DA+ILD+ L  + G+ +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R      PV  L+   S+EDK+ GL  G DDY++KPF+ EE+VAR+R I+RR+   
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V  D+ +N +   V   G  + L+  E+ ++    +     L+K   L H+
Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILEHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++ +++ ++  LR+K+    G K  ++T+ G GYVLRE 
Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKI--DTGEKKMLQTLRGVGYVLREP 239


>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 119/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   + ++L++E + V   + GE  I   K  + D IILD+ +  + GF+
Sbjct: 4   KILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAK--DMDLIILDVMMPKMDGFK 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R +R    + P+  L+  +  +DK  G  SG DDY++KPF+  EL+AR++A++RR   
Sbjct: 62  ACRQIREVS-NAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S IV  DL ++ ++  ++  G  ++LT  EYQ++ LL+       + +  
Sbjct: 121 YKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQEL 180

Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++ G         I V I  LRKKL        YI+TVWG+GY  
Sbjct: 181 YEAIWKGPYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGYRF 228


>gi|284029587|ref|YP_003379518.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283808880|gb|ADB30719.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 124/219 (56%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD AL+  + ++L++E ++ Y+   G+  +   + ++ D ++LDL L  + G +
Sbjct: 4   RILIVDDDTALSEMLSIVLRNEGYDTYLCATGDKAVPAFREFKPDLLLLDLMLPGMDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA +RR   
Sbjct: 64  VCRAIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARLRRMDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++   +V+  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PGPESLTIGDLTIDVAGHSVKRSGETIQLTPLEFDLLVCLASKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEIVVTVRGVGYK 221


>gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
 gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
          Length = 240

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F +      +    L        I+LDL L    G  
Sbjct: 6   KVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYISKPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +  +   + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSQDNAIISFGKFKLNLGTREMFHEEEHMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVFVPDG 236


>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +E  L    ++V     GE+ +   +    D I+LD+ +  + G+ 
Sbjct: 7   KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR      P+ +L+ + ++ D++ GL+ GADDY++KPF+ +EL ARI  I+RR   
Sbjct: 67  VCQELRKES-DVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFH 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     ++I  G+L ++ + + V     RI LTG E+ ++ELL        ++   
Sbjct: 126 KTSVNTTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEM 185

Query: 175 LNHLYD--GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  L+        + +++DV I +LR K+ +       I T  G GY  
Sbjct: 186 LQLLWGCVPGLHLDTRVVDVHISRLRTKVEDDPNLPELIITARGSGYFF 234


>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD ++   +EL L+ +   V+    GEDG+   +    D ++LDL L  I GFE 
Sbjct: 4   VLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLPGIDGFET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL++GADDY+ KP     L ARIRA++RR+   
Sbjct: 64  CRRIRALG-QVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTAAE 122

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A      GDL ++     V   G ++ LT  E +++  +S       ++   L  ++ 
Sbjct: 123 PGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +++D  + +LR K+ +     ++++TV G GY  
Sbjct: 183 HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGYRF 223


>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
 gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
          Length = 228

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
 gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++LI  G  ++NL  + +      I LT  E+ +++ L       L+++  
Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEIDAANPRYIQTVWGLGYVFVPDGE 238


>gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 224

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I   L+ + F V     GE      +   + A +LDLGL  + G 
Sbjct: 1   MRILLVEDDPLLGDGIRAGLRQQGFQVDWVQDGEAAQRELRAQPYAAAVLDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR++R   +  P+ +L+   ++ D+VRGL  GADDY+ KP + EEL AR+RA+VRR+ 
Sbjct: 61  DVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +   D+ ++  ++ V   G  + L+ +E+ ++ +L L     L++E    HLY 
Sbjct: 121 GRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQIEQHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LR KL +       I TV G GYVL
Sbjct: 181 WGQEVESNAVEVHVHRLRSKLGSD-----VIRTVRGIGYVL 216


>gi|229083792|ref|ZP_04216105.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
 gi|228699512|gb|EEL52184.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-44]
          Length = 216

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/216 (27%), Positives = 104/216 (48%), Gaps = 8/216 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
           + E + VY    G +G  + + Y+ D IILDL +    G+E+   +R    + P+ +L+ 
Sbjct: 2   EREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKDGWELCEEIRQ-YSNVPIIMLTA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------SRGHAQSLIVTGDLS 133
                D++ GL  GADDY++KPF+  ELV R++ I+RR       ++     +I   DL 
Sbjct: 61  RGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNYVTIQTQEPVSGMIEFLDLK 120

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +    + V V  H I LT KE++++ +++       ++   L  ++    E     + V 
Sbjct: 121 ICPTKRRVFVCEHEIELTVKEFEVLYIMAKHPKQVFSRSQLLEQIWGFEYEGCTNAVTVL 180

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           + +LR+KL        +I TVWG GY        + 
Sbjct: 181 MSRLREKLEKHTTKSRWIHTVWGIGYRFEPEEGSQA 216


>gi|207724242|ref|YP_002254639.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
 gi|206589458|emb|CAQ36419.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum MolK2]
          Length = 224

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K  TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+RR  
Sbjct: 61  QVIRELRRRKP-TPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 120 MRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 180 VNFDSNTNVVDVAIRRLRAKV-DDPFEHKLIHTLRGMGYVLDTVAR 224


>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 234

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D+ ++   +E  L    + V     GE+ I      + D ++LD+ +  + G+ V +
Sbjct: 1   MVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQ 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122
            LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR+++RR   +  
Sbjct: 61  ELRKES-DIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +  ++    + ++ + + V     RI LTG E+ ++ELL  R     ++   L  +
Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179

Query: 179 YDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLFQ 225


>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 227

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L+ + ++V V   GE G ++    ++D +ILD  L+ + G 
Sbjct: 1   MRILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R   +STPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRRPG 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S++   DL + ++ + V   G  I L+ KE Q++  L    +  LT     + 
Sbjct: 121 SPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIYDA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     P    +   +  LRKK+    G    I TV+G+GY L
Sbjct: 181 VWGEGSAPSSNTLAAQMRLLRKKIEQ-PGQPVLIHTVYGKGYRL 223


>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
 gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
           [Gemmatimonas aurantiaca T-27]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   +   L    + V     G D +E+ +      I+LDL L  + GF+
Sbjct: 10  RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VL  LR  + +    V +L+      D++RGL  GADDY++KPF+  ELV R+ AI+RR+
Sbjct: 70  VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRT 129

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L ++  A TV V G  + LT  E++++  L+ R+     +   L 
Sbjct: 130 GSATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLE 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++   + + + +D+ + +LR KL  A      IETV G GY LR +A 
Sbjct: 190 TVWEAAPDIQTRTVDMHVQRLRSKLGAAG---ELIETVRGFGYRLRASAP 236


>gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
 gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    +        I+LDL L    G  
Sbjct: 6   KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +      + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSQDDAIITFGKFKLNLGTREMFQGEENMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+  ++         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRA 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G + ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L      +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FNAENMVQTVRGAGYRF 225


>gi|300864987|ref|ZP_07109818.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
 gi|300337022|emb|CBN54968.1| multi-component transcriptional regulator [Oscillatoria sp. PCC
           6506]
          Length = 620

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 9/235 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD+ L+ ++  +L   ++ + +   G+ G+EL    E+D I+LD+ +  + G 
Sbjct: 1   MKILLVDDDRLLSATLAKVLGVNHYAIDLASDGQAGLELATAIEYDLILLDVQVPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      P+ +L+   S  D V G  +GADDYISKP   E L+ARIR ++RRS+
Sbjct: 61  SLCRQLRSQGYRKPILLLTANDSDADVVAGFDAGADDYISKPCATEVLLARIRTLLRRSQ 120

Query: 121 GHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +          + +  G+L ++LD+  V      I LT  EY ++EL     +   ++
Sbjct: 121 ALSPRDSAQNLLANTLTWGNLCLDLDSGRVTFDKQIISLTATEYNLLELFLRNPDRIFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L+ L+   D P  + I   I  +RKKL      +  IETV+G GY L+   K
Sbjct: 181 SAILDRLWGLEDAPTDRAIITHIKDVRKKLKAGGLSEEIIETVYGMGYRLKSQPK 235



 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +   L      V      +   E+    + D ++LD+ +  I G E
Sbjct: 499 KVLIVDDDVLMLARLSDFLTPWAIEVITLTEPQQFWEVLISTKPDLVVLDIEMPFINGLE 558

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R      + P+ +++  +  E   +   +GADD+ISKP    ELV R+ + + RS
Sbjct: 559 LCQVVRQDIQWENLPILVVTAHTDPESLQKAFIAGADDFISKPVLGPELVTRVISRMERS 618

Query: 120 R 120
           R
Sbjct: 619 R 619



 Score = 71.8 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 61/139 (43%), Gaps = 2/139 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPG 59
           R+L+++DD  L   ++   ++    + +     +   L      D ++LDL    T+  G
Sbjct: 374 RLLVVDDDIVLTERLKAESEAWGLRIKIASNLTNARALLALSMPDVMLLDLSFAETEEDG 433

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ +       P+ + +G  S+ D++   + GA  ++ KP   +++   I  ++ + 
Sbjct: 434 LTLLQEVTKRSPHLPIIVFTGRDSLADRLAVSRLGARQFLHKPATTKQIFDAISRVLPQP 493

Query: 120 RGHAQSLIVTGDLSVNLDA 138
           +     +++  D  + L  
Sbjct: 494 KTLKAKVLIVDDDVLMLAR 512


>gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 258

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 138/221 (62%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A  +   L+S  F V   + G DG+       FD +I+D  L ++ G  
Sbjct: 36  RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ +LR  ++STPV +LS +S+++D+V GL++G DDY++KPF  EEL ARI A++RR   
Sbjct: 96  LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G LS++L  +TV   G  I L  +E++++E L  R N  LT+ M L  +++ 
Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ +  G +  I+++ G G++LR
Sbjct: 216 RFIPQTNLVDVHIGKLRRKI-DDPGAQPLIQSIRGTGFMLR 255


>gi|77359802|ref|YP_339377.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874713|emb|CAI85934.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V D G++     +    D IILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVDVLDRGDEVFTYLESNPVDLIILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K +TP+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKYTTPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  A   +  GDL ++  ++ V++ G  I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 NLKATEELQFGDLFIDKTSRIVKLSGAEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + +   + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLDRTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 235

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILL++D+ A+   +  +L+ E F ++      E+ + L + + +D +ILD+ L    GF+
Sbjct: 6   ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   +R  K   P+  L+  +S  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHLK 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   G   V+  A  ++V G+ +  + + +Q++       N   +KE   
Sbjct: 125 YTPKTIQTSDIYSFGRFQVDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++       +   + V I KLR+K+        YI+TV G GY  
Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231


>gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
 gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
          Length = 223

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  +   L+     +     G DG+ L     +DA+I+D  L  + G 
Sbjct: 1   MRILLIEDDSEAAAYMAKGLREAGHVIDHAATGTDGLFLATSERWDAMIIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            +++ALR A  +TPV +LS +  ++D+VRGL++G DDY+ KP+   EL+ARI A+ RR S
Sbjct: 61  SIIQALRAAGNTTPVLVLSALGKVDDRVRGLKAGGDDYLVKPYAFAELLARIEALSRRVS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +   DL ++L A+ V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 STQPETRLKVEDLEMDLLARAVTRGGQEIDLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR+K+         I TV G GY LR
Sbjct: 181 EYHFDPQTNLIDVHISRLRQKVDKDFELP-LIHTVRGAGYTLR 222


>gi|315639566|ref|ZP_07894707.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
 gi|315484665|gb|EFU75120.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
          Length = 241

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/239 (29%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++        +D I LDL L  + 
Sbjct: 3   MNILMIEDNESVSEMMQMFFLNEGWEATFKYDGKEGLDTFLANPHFWDLITLDLNLPSMD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 63  GMIVAREIRKVSKTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARIKALHRR 122

Query: 119 SRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
                +             I T  L VN   +   + G  I  LT KE+ ++  L+ +  
Sbjct: 123 MELVEKEGKVQEASDQEFDIETQFLKVNTKTREAYLNGKLIEGLTPKEFDLLYTLAKKPR 182

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 183 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 239


>gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 222

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/222 (40%), Positives = 130/222 (58%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+K LA  IEL LK E++ V V   G  G+E     E+D I+LDL L  I G E
Sbjct: 3   KILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLMLPGINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ +L+    + DKV GL SGADDYI KPF  EEL+AR+R+++RRS  
Sbjct: 63  VCRRIRKTK-QTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S  I    L ++ +A+ +      I LT +E+ ++ +L       +T+E  L  ++ 
Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E  ++DV+I  LR K+ +  G  ++I+T+ G GYV+R
Sbjct: 182 YDSEVETNVVDVYIRYLRSKI-DEPGEASFIQTLRGLGYVIR 222


>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRKES-EVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +N+
Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
 gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseibium sp. TrichSKD4]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L+  ++  L++E + V V   G++     +    D ++LD  L  + G E
Sbjct: 3   KVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLPGLSGIE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  + +   PV +L+      +++RGL +GADDY+ KPF+  EL+AR+RAI+RR+
Sbjct: 63  LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +L+ +GD+ ++ +   V      IHL   E++++E L        ++E  L+ +
Sbjct: 123 SPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLDGV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK L N    K+ I TV G GY   + 
Sbjct: 183 WGHDVYVDERTVDVHVGRLRKAL-NRGKAKDPIRTVRGAGYAFNDQ 227


>gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
 gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii
           SH046]
          Length = 254

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ +        YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVFVPDGAE 254


>gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 254

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  
Sbjct: 22  RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 82  ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  
Sbjct: 142 EVPGAPSQQMEVVSFGPWSLDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPLTRDKL 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV + +LR+ +        YI+TVWG GYV   +  +
Sbjct: 202 MNLARGREWGAMERSIDVQVSRLRRLVEENPARARYIQTVWGVGYVFVPDGAE 254


>gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G  V
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARI A  R ++  
Sbjct: 64  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240


>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 254

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 251


>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 238

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 119/237 (50%), Gaps = 12/237 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+K +A  +  ML++E F       G D + +    + D +ILDL L  + 
Sbjct: 1   MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLPGLD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV   +R         + +L+  +   D++ GL +GADDY++KPF+  EL+AR+RA++
Sbjct: 61  GLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALL 120

Query: 117 RRSRGHAQSL---IVTGDLSVNLDAKTVEVQ--GHR---IHLTGKEYQMIELLSLRKNTT 168
           RRS    QS      T   +V+++    +    G     + LT  E+++++         
Sbjct: 121 RRSLRGEQSDHLLYRTESFTVDVEHHIAQRHLSGQEAEMLDLTSLEFKLLQTFLSYPGRA 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++   +++L+      + +++D  + +LRKK+        +I+T+ G GY   +  
Sbjct: 181 WSRTQLIDNLWGNDFFGDDRVVDTQVARLRKKIEVNPTQPQFIKTIQGVGYKFEDGP 237


>gi|148975848|ref|ZP_01812637.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
 gi|145964593|gb|EDK29846.1| two-component system response regulator (Pho family) protein
           [Vibrionales bacterium SWAT-3]
          Length = 224

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHAIDGIDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++L   T++     I +  +E+ +++LL     + ++K   L H+
Sbjct: 121 QPTSQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENPESVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFSKP-LIHTLRGVGYVLK 223


>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
           DW4/3-1]
 gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  +   +   L     +V     G  G+   +   +DA++LD+ +  + G E
Sbjct: 4   RVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   P+ +L+      D+V GL+ GADDY++KPF+  EL+AR+RA++RR++ 
Sbjct: 64  VCKRIRA-KTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQP 122

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    +    +S+++  + V+V G  + LTG E++++  L  R    + ++  L     
Sbjct: 123 TAVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEAGR 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  + +DV I  LR+KL +  G    I+TV G GYV  +  
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDEGG--RLIKTVRGVGYVFAKEG 225


>gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CMR15]
          Length = 224

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+RR  
Sbjct: 61  QVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 120 MRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 180 VNFDSNTNVVDVAIRRLRAKV-DDPFEPKLIHTLRGMGYVLDTVAR 224


>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 223

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   I   ++   +     D G + + + K    D +ILD+ +  + GF 
Sbjct: 3   KILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R  R    + P+ IL+     EDK++G + GADDYI+KPF+ + L+A++ A++RR   
Sbjct: 63  VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G + + + ++ V V+   I LT KE++++ L     N   ++E  LN ++ 
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  I  LRKKL       ++I T+   GY   
Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220


>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
 gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
 gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
          Length = 235

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ N+  +    G + ++       D I+LDL L    G  +
Sbjct: 10  ILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLPGKDGLTL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDY+ KPF+  E+VAR++ I+RR +  
Sbjct: 70  CREIRRDS-ELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRVKRS 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +   V   L V+        +   + LT  E+++++ LSL      ++E  LNHLYD  
Sbjct: 129 PEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + ID  I  LR+KL N    + +I  V+G GY    +
Sbjct: 189 RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWEAD 230


>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
 gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
          Length = 219

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 115/220 (52%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD +L   I   LK E + V     G   +       F   +LDLGL  + G 
Sbjct: 1   MRVLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A+  TPV +L+   +I D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +    ++++  ++ V   G  + L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRPQPALEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ++V I  LRKK          I TV G GY+
Sbjct: 181 WGEEAESNALEVHIHHLRKKF-----FPELIRTVRGVGYL 215


>gi|269139014|ref|YP_003295715.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|267984675|gb|ACY84504.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Edwardsiella tarda EIB202]
 gi|304558949|gb|ADM41613.1| Copper-sensing two-component system response regulator CusR
           [Edwardsiella tarda FL6-60]
          Length = 227

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V + D G  G  L     +D IILD+ L D+ G+
Sbjct: 1   MKILIVEDEVKTGKYLCKGLTEAGFVVDLADNGLTGYHLAMTAGYDLIILDILLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           E++R LR A    P+ +LS + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  EIVRMLRSANQGLPILLLSALGTIEQRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S     DL+V L ++ V   G RI LTGKE+ ++      +   L + +  + ++
Sbjct: 121 PPIPESQFHVADLTVELLSRKVTRGGKRITLTGKEFTLVTFFIRHQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +   IDV + +LR K+         I+TV G GY+L     D
Sbjct: 181 DMNFDSDTNAIDVAVKRLRAKIDLDF-EPKLIQTVRGVGYLLEAPDVD 227


>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
 gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia ambifaria IOP40-10]
          Length = 223

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 139/225 (61%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A+ ++   DL V+L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR++A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I  G L+++++++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +   +   I K+R K        N+I TVWG GY   
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225


>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 246

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 21  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR+RA++RR    
Sbjct: 81  TKRI-EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 139

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 140 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL  +      I TV G GY     
Sbjct: 200 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPP 244


>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
 gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
           15579]
          Length = 231

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +E+ L ++ + V+    G D + +    +   +ILD+ +  I G +V
Sbjct: 4   VLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    + P+ ++S      DK++GL +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 64  CMKIRKE-YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRRYVYL 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   + +I    +++N     V + G  + LT  EY+++ LL+       + E  
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNGGKVFSAEDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++  +       +   I +LR+KL +       +ETVWG GY + 
Sbjct: 183 YKEIWTEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 230

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +   L    + V V   GE+G    +  ++D ++LD+ L  + G 
Sbjct: 1   MRILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGT 60

Query: 61  EVLRALRVA--------KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            + + LR A          + PV +L+   ++ DK+ GL +GADDY++KPF+  EL+ARI
Sbjct: 61  LLCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARI 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA++RR    +  L+  G L +N         G  + LT KE+ ++ELL       L++ 
Sbjct: 121 RALIRRGSSTSSVLLSWGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRS 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +  ++   D P  + +   I  LR KL +    +++IETV G GY L+
Sbjct: 181 GIIERVWSLDDSPAEETVTSHIRGLRHKLKSLGAPEDFIETVHGLGYRLK 230


>gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans
           568]
 gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++ED+  L   +   L++  +  +    G + +     +    I+LDL L    G  
Sbjct: 10  QIMIVEDEPKLGQLLVDYLQAAGYATHWLTNGSEVVPAVHAHSPALILLDLMLPGSDGLT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 70  VCRELRRF-TDIPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +      L ++        QG  + LT  E+++++ L+ +     ++E  LN+LYD 
Sbjct: 129 PLDNTQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + ID  I  LR+KL    G K++I +V+G GY      
Sbjct: 189 YRVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWEAEP 232


>gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator
           [Verminephrobacter eiseniae EF01-2]
 gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator,
           winged helix family [Verminephrobacter eiseniae EF01-2]
          Length = 231

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  +   L  +   V +   G DG  L  ++++D I+LD  L  + GF
Sbjct: 1   MKILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR+ K  TPV +L+    +ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  SVLRSLRILK-QTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GDL ++L ++       RI LT KE+ ++ +++ R+   L+K      ++D
Sbjct: 120 AQEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    +++V I +LR K+ +A   +  + T+ G GYVL   A
Sbjct: 180 MNFDSNTNVVEVAIKRLRAKI-DAPFSQKLLHTIRGMGYVLEPRA 223


>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
          Length = 222

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E ++V VT  G + ++  +  + D ++LDLGL ++ G EV
Sbjct: 4   VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  G 
Sbjct: 64  ARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGGGE 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                V   + ++ D++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 124 VP---VVHGVRIDTDSRRAWLGDRELQLTTKEFDLLRVLVREAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                K +D+ I  LR+KL + A   +YI TV G G+   + 
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFEKE 222


>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ +       + + +ILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MEVIKQVRKDS-DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G        ++  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227


>gi|300789808|ref|YP_003770099.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799322|gb|ADJ49697.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 227

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 6   RVLVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLMLPGMNGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 66  VCKAIRAESG-VPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEA 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V  +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 125 EPAESLTIGDLAIDVPGHEVTREGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223


>gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 231

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F V     G + ++L +  + D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENNQVDLMIVDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRETS-SIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A  +   G L++N D K V V G  I LT  EY ++ LL        + +   
Sbjct: 123 GNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231


>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 234

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 73  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231


>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  ++  ++L L+ E + V     G  G E+    E++ ++LD+ L ++ G E
Sbjct: 4   RVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           VLR LR A    PV +L+   ++ DKV G + GA+DYI+KPF  EEL+AR+R I+R    
Sbjct: 64  VLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQ 123

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI  GDL++ L  + V  +   I LT +E++++  L   KN   ++E  L+
Sbjct: 124 YPKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E  ++DV+I  LR+KL +       I TV G GY+++E 
Sbjct: 184 EVWGYDFIGETNLVDVYIRYLRQKL-DKGYRHKLIHTVRGVGYMIKEP 230


>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + L +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 1   MKILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK+RGL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELRKES-QIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  A S     +    L +N D+  V  + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A  G+  I+TVWG GY +
Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKI 226


>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
           transcriptional regulator [Stenotrophomonas maltophilia
           K279a]
 gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
 gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
           transcriptional regulatory protein [Stenotrophomonas
           maltophilia K279a]
 gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Stenotrophomonas sp. SKA14]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+  ++         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRA 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G + ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L      +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FNAENMVQTVRGAGYRF 225


>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
           17982]
          Length = 236

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E +       G D +     +  D +ILD+ +  + G E
Sbjct: 12  RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
            L  LR      PV  L+   ++ D+V+GL++GADDY++KPF+ +E+ AR+  ++R   R
Sbjct: 72  TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGR 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++  A +++   DL++++D+  V   G  I LT  E++++  L       L+K+  L+ +
Sbjct: 132 TQQAASTVLQVADLTLDVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      +V +++++I  LRKK+   A     I TV G GY++RE 
Sbjct: 192 WSYDFGGQVNVVELYISYLRKKI--DADRPALIRTVRGAGYIMREP 235


>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 65  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 124 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV + +LR+K        + I+T+ G GY L 
Sbjct: 184 FEGNERTLDVHMNRLREKFQEEKSRFS-IKTIRGLGYRLE 222


>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 9/229 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD- 56
           M+   IL+++D+  L   +++ L +  + V     G+  IE+ +   +D +ILD+ L   
Sbjct: 1   MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GFEV + +R      P+ +L+G +  +D++RG  +GADDY++KPF+ EEL+ R++AI+
Sbjct: 61  LNGFEVCKRIREFS-DIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAIL 119

Query: 117 RRSRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RRS    +     +   GDL +N   K V V+G  + LT  EYQ++  L       +T E
Sbjct: 120 RRSHPSEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++      E+  +  +I  LRKK+ +  G   YI    G GY L
Sbjct: 180 DLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228


>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
 gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + D +ILD+ + ++ G
Sbjct: 1   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
 gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
           49176]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  +I++  ++E + V+  + G++ + +    E   I++D+ +  + G + 
Sbjct: 11  ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDGIQT 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R LR   I  PV +L+  S   DKV GL  GADDY++KPFN  EL+AR ++ +RR    
Sbjct: 71  VRKLREDSI-IPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVRF 129

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +   A  ++    L ++ +AK V+V G ++ LT KE++++++L L K    + E   
Sbjct: 130 GGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETIY 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             ++          + V I  LR+K+        +I+ VWG+GY 
Sbjct: 190 RKVWGEEPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGYK 234


>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 273

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD+ +  +I++ L  E F V     G + +EL K +E + +I+D+ +  + G  
Sbjct: 45  KILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGIR 104

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR   
Sbjct: 105 TTLKVRETS-SIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 163

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   G L +N + K V V G  I LT  EY ++ LL        + +  
Sbjct: 164 LGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 223

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 224 YEEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 273


>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 228

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + IE+ML + +   Y    G +  ++    + D ++LD+ +    GF V
Sbjct: 5   VLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    + P+  L+   + EDKV+GL  G DDYI KPF  +EL ARI A++RRS  +
Sbjct: 65  CQSIRAMS-NVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +V G + ++  A+ V V G  I LT KE++++ L         T+E  L  +
Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D       + +D  I  LR KL   A    +I+TVWG GY    
Sbjct: 184 WDIDYVGGTRTVDTHIKTLRIKLGKEAAA--HIQTVWGVGYRFDP 226


>gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
 gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter
           xylosoxidans A8]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 135/228 (59%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  I+  L    F V ++  G +G+ L   +++DAIILD+ L    G+
Sbjct: 1   MRLLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVMLPGQDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV +LS   S++++V+GL+ GADDY+ KPF+  EL ARI+A++RR  
Sbjct: 61  ALLRQLRARKP-TPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRRV 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     + +  GDL V+L A+     G R++LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 GTGGDSTWLQVGDLQVDLLARRATRAGQRLNLTAKEFALLSLLARHQGEILSKMMISEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +++V + +LR K+ +A      + TV G GY+L   A+
Sbjct: 180 WDMNFDSDANVVEVAMRRLRLKV-DAPYDTKLLHTVRGMGYLLESRAE 226


>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL  +DD  L   +   L+ E++ V     GE  + + +    D I+LD+ +  + GF V
Sbjct: 8   ILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVMMPRVDGFTV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R   +  P+ I++      DKV+GL  GADDY++KPF+ EEL+AR+RA++RRSR  
Sbjct: 68  CKHIREFSM-VPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRSRFS 126

Query: 123 AQSLIV-------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A             G+L+++     +      + LT  EY+++  L+      +T +  L
Sbjct: 127 ASEPGQSARMQASIGELTIDYSQHLIIKGTKELSLTPIEYRLLAYLAQNMGRIVTHDQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            H++      E  ++ V I +LR+KL        Y+ T  G GY L
Sbjct: 187 EHVWGSEYIGESHMLQVNINRLRRKLEPDPSHPRYLLTKVGIGYFL 232


>gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B]
 gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B]
          Length = 217

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 121/219 (55%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   +EL  K E   V   + GED I   + ++ D ++LD+ L DI G 
Sbjct: 1   MKILVVEDDDKLRRLLELEFKHEKCTVKTCEYGEDAIIEYQEFKPDVVVLDIMLPDIDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R    S  + +L+ +S  ++K+ G +SGADDY+ KPF+ EEL AR++AI RR  
Sbjct: 61  EVAKKIRKLDPSAGIIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL +N+  + V  +G  I+L+  E+ ++  L       ++KE  L+ ++ 
Sbjct: 121 ITLNDEIKIKDLIINISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E     ++V+I  LRKKLS+       I+TV G GY
Sbjct: 181 ISYEGSENTVEVYINYLRKKLSSD-----IIKTVRGIGY 214


>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
          Length = 223

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K +   I   ++   +     + G + + + K    D +ILD+ +  + GF 
Sbjct: 3   KILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R  R    + P+ IL+     EDK++G + GADDYI+KPF+ + L+A++ A++RR   
Sbjct: 63  VCRVSREM-TNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G + + + ++ V V+   I LT KE++++ L     N   ++E  LN ++ 
Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  I  LRKKL       ++I T+   GY   
Sbjct: 182 YDFEGNTRTVDTHIKTLRKKLG---SEGHHIVTLIRSGYKFE 220


>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 2250]
 gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae FF5]
 gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. syringae 642]
 gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. mori str. 301020]
 gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae Cit 7]
 gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aceris str. M302273PT]
 gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. lachrymans str. M301315]
 gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 229

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
 gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti
           MAFF303099]
          Length = 221

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L    + V     GE+G  L     +DA++LD+GL  I G 
Sbjct: 1   MRVLVVEDDKDLNRQIADALVDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPQIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G L ++  A   +V G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHASSELTCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VF+ +LRKK+         IETV G GY +RE 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGID-----MIETVRGMGYRMREP 219


>gi|221069658|ref|ZP_03545763.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714681|gb|EED70049.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 249

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 14/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55
           ++L+IEDD  LA  +   L +    V     G+ G+E  +  +       D +ILDL L 
Sbjct: 11  QLLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLP 70

Query: 56  DIPGFEVLRALRV---AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           D+ G EV R +R    A    PV +L+      D++ GL+ GADDY+ KPF   EL+ARI
Sbjct: 71  DMDGLEVCRRIRSMPGAPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARI 130

Query: 113 RAIVRRSRGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           RAI+RR  G +Q+     ++  G L ++ DA+TV V   +  LT  ++ ++  L+ R   
Sbjct: 131 RAILRRKGGESQAAPANAVMRFGSLEIDRDARTVSVGEQQADLTSYQFDLLVALAERAGR 190

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LT++  +  +     E   + IDV + ++R  +         I TV G GYV  + 
Sbjct: 191 VLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVFAKQ 247


>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 240

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+++LA  +   L+ + + V     G   ++  +  E D ++LDL L  + G E
Sbjct: 14  RVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDGVE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V +L+  +   DK+ GL  GADDY++KPF+  ELVAR+ A+ RR R 
Sbjct: 74  VCRRLRAFS-DCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAMRRRPRQ 132

Query: 122 HAQSLI----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G L V++ A+   +    + LT  E+ ++ +LS R N  L++   +  
Sbjct: 133 PRIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEFDLLAVLSGRPNVALSRAQLITA 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      + +++DV I  LR+KL +      +I TV G GY +R  +
Sbjct: 193 VWGDGWVGDERLVDVHIGHLRRKLGDGPARPRFILTVRGIGYRMRPQS 240


>gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 239

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++LI  G  ++NL  + +      I LT  E+ +++ L       L+++  
Sbjct: 127 EVPGAPAAEENLIAFGKFTLNLATREMSEGDKTISLTSGEFAVLKALVSHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIEVDAANPRYIQTVWGLGYVFVPDGE 238


>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 245

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD ++A  I++ LK   + +     G + ++  +   FD +ILD+ +  + GFE
Sbjct: 20  RILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+ IL+     ED V G + GADDYI+KPF   EL+AR+ +I+RR  G
Sbjct: 80  ACERIRAQS-DVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++  G+L ++     V V+G  ++LT  E++++  L+        +E     
Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      E  ++DV + +LR+K+         I TV G GY L E
Sbjct: 199 VWGYEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKLAE 244


>gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 242

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L  + F V   +  ++   +      D ++LDL L    G  
Sbjct: 8   KILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLMLPGEDGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 68  ICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRRHER 127

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +A   I  GD   N   +++  QG  I +T  E+ ++++        L+++  
Sbjct: 128 LVPSAPANAAENITIGDFVFNASTRSLSRQGTAIAITSGEFALLKVFVDHPRQPLSRDRL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        +   + IDV + +LRK +        Y++T+WG GYV   + +
Sbjct: 188 MQLARGRELDVYDRSIDVQVSRLRKLIEPDPAHPRYLQTMWGFGYVFIPDGE 239


>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 225

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRKES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +++
Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1]
 gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 226

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           I ++EDD  +   +   L+S  F+    + G + ++      + + ++LD+ L    G  
Sbjct: 2   IFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGIS 61

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  LR        P+ +++   +  DKV GL SGADDYI+KPF   ELV+R++A++RRS
Sbjct: 62  ILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRRS 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   +  I+ G L +  +   V+  G+ + LT KE++++ LL   K   L ++  L ++
Sbjct: 122 SRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTNI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + E + +DV I  LR+KL         IETV G GY +
Sbjct: 182 WGYDFDGETRTVDVHIRSLRQKLGECG---KLIETVRGIGYRI 221


>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
 gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
 gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 235

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++AL   +   L+ + ++V     G+D     K +  D I+LD  L  + G E
Sbjct: 4   RIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GD+ ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 SPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNLGREQDPIRTVRGAGYALDD 227


>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
 gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 232

 Score =  263 bits (674), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F+  +   G   +      + D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR+   + PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKELRLVS-NVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGDT 122

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  G + +++D+ TV V G  +++  KE+ ++E L       LT+  
Sbjct: 123 EAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRGQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++ ++      + K +DV + +LR K+        ++ TV G GY 
Sbjct: 183 LIDRIWGADYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGYK 229


>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 690

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 532

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 533 CRELRSFS-AVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 591

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 592 DPHTPKV--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 649

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 650 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689


>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 234

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 74  CLELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231


>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
 gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
 gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
          Length = 234

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK +NF VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTQLIHTVRGVGYVLR 230


>gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
 gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2]
 gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans
           CGD2M]
          Length = 225

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      ++   +   F V +   G  G+ L +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVMLPVLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+  GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  SVLKRLRDTH-ATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D
Sbjct: 120 PRETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +A   K  I TV G GY L 
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKVDDAFPLK-LIHTVRGVGYALE 220


>gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
 gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +++ L+S+ + V+    G +G+E+ +  E    I+D+ +  + G  
Sbjct: 5   HVLIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEEIHLAIIDIMMPRMDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTMKLRE-KYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRK 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++  V G L +N D   V + G+ + LT  EY+++ LL+       + E   
Sbjct: 124 FLEKLAPQENTHVIGGLEINEDMVEVSMDGNPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++          I V +  +R+K+        Y++ VWG GY + +  
Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQP 232


>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 248

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKDS-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKD 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 244

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 112/230 (48%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L   +   L    + V   D G       +    D I+LDL +    G  
Sbjct: 10  RILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLMMPGEDGLA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR     TPV +L+      D+V GL+ GADDY+ KPF   ELVARI A++RR   
Sbjct: 70  VLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRRLGP 129

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G  ++N  A TV  +G  + L+ +EY +   L+      L++   +  
Sbjct: 130 DRTLARDEVLTVGPFTINFSAMTVAREGQPLVLSSREYALFAALARSAGRPLSRAQLIER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E   + IDV + +LR+ + +      ++ TVWG GYVL +NA+D
Sbjct: 190 ALGRDAEVTDRAIDVQVARLRRAIGDDPSDPRHVRTVWGVGYVLADNAED 239


>gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 223

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ A+   + L L      V       +  E     + D ++LD  L D PG  
Sbjct: 4   KLLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQL--PQADLVVLDWMLPDEPGVR 61

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  LR      + PV +L+  +   D+V GL  GADDY++KPF+  EL+ARI+A++RRS
Sbjct: 62  LLERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPELLARIQALLRRS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G L+++L+     + G  + LT +E+ ++  L+       ++E  L  ++
Sbjct: 122 GKSG--RIERGGLALDLERHQASLDGRPLDLTRREFDLLAFLARHPGRVYSREELLERVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   + +D  + +LR+KL        ++ET+ G GY  RE
Sbjct: 180 GPEFMGTARTVDQHVAQLREKLQEDPKLPRFLETLRGVGYRFRE 223


>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 254

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 19/239 (7%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  +A ++   L++E + V     G  G+ELC+    D ++LD+ L    G EV R
Sbjct: 22  VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            ++ A+   PV +L+      DK+ GL  GADDY++KPF+  ELVAR+  +VRR      
Sbjct: 82  RVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARA 140

Query: 119 ----SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   A+++   +  G+L ++   + V   G  +HLT  E+ ++  L+    T LT+
Sbjct: 141 LVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTR 200

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           E  L  ++D  D    + +D  +  LR+KL         + TV G GY        E  
Sbjct: 201 EKLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGGVQEAP 254


>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 246

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 127/236 (53%), Gaps = 10/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +RILL++D+  L   +++ L+ E ++V V   G  G+   +     D I+LD  L D  G
Sbjct: 9   IRILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFSG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V  L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 69  IDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G     +  G+LS+N   + V      I L+ KEY+++  L   +   LT+
Sbjct: 129 ITFSAINGDGPQPETLKVGNLSMNTSTRDVSRGDRLIQLSVKEYELLNFLMRGQGKVLTR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +  ++      +  ++DV+I  LR+KL +       I TV G G++LRE  +D
Sbjct: 189 ADIMRGVWGENFYGDDNLLDVYIRYLRQKLESK-DLPTLIHTVRGVGFILREEIQD 243


>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
 gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
          Length = 218

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 117/220 (53%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+AL   I   LK E + V     G   +       F+  ILDLGL  + G 
Sbjct: 1   MRILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ L+ A    PV +L+   +  D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +    + ++  ++ VE QG  I+L  KE+ ++  L ++    LT++     LY 
Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ++V +  LRKK          I TV G GY+
Sbjct: 181 WDEEVESNALEVHVHHLRKKF-----FPELIRTVRGVGYL 215


>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 225

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  S++  L+  ++ V +   GED + +     +D I+LD+ L  + GF
Sbjct: 1   MRILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPRLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  + + P+ +L+ +  ++ +V GL +GADDY++KPF   EL ARIRA++RR  
Sbjct: 61  EVCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   D+ ++            I L  KEY ++E L       L++ M   H++D
Sbjct: 121 TTKTAALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    +IDV+I  LR+KL       + I T+ G GY L+E A
Sbjct: 181 CETEHLSNVIDVYIRYLRRKLCEN-HEPDVIHTIRGAGYQLKEPA 224


>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A ++++ L+ E + V+V   G+ G+E       D ++LD+ L ++ G E
Sbjct: 4   RILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELSGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR +R      PV +L+   +  DKV GL  GA+DYI+KPF  EE++AR+R  +R    
Sbjct: 64  VLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGAI 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +   DLSVNL+ + V  +   I LT KEY ++  L   +N  L++E  L
Sbjct: 124 IQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++    E E  ++DV+I  LRKK+         I TV G GYV+R+  
Sbjct: 184 LTVWGYDYEGETNVVDVYIGHLRKKIEEEINSP-LIRTVRGVGYVIRKEP 232


>gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
 gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family
           protein [Marinomonas sp. MED121]
          Length = 239

 Score =  263 bits (673), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA   +  L+   + V V   G   I      +   +ILDL L    GF V
Sbjct: 9   ILIVEDDERLALLTKEYLQKNGYQVEVEADGSRAITRIIETQPSLVILDLMLPGADGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R++R      P+ +L+  S   D++ GL+ GADDY+SKP     L+AR+++++RRS   
Sbjct: 69  CRSVRE-GYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIMD 127

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  G L ++   +   V G  I LT  E+ ++ LL+      L++E 
Sbjct: 128 VGKQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSREE 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               L     + + + +DV I ++R K+ +       I+T+  +GY+  +  
Sbjct: 188 IFGELRGIEYDGQDRSVDVRISRIRSKIGDDPVHPRRIKTIRSKGYLFVKEV 239


>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   LK E F V     G + + +    + D +I+D+ + ++ G+E+
Sbjct: 4   ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P  +L+       K++G + GADDY+ KPF   EL+AR++A+++R R  
Sbjct: 64  CAEIR-DHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRIA 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   +  GDL ++     V+V G  + L  KE++++  L+     + ++   +  ++   
Sbjct: 123 SSQTVQAGDLILDRKTYVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWGYD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR++    +     I T+ G GY L 
Sbjct: 183 FEGNERTLDVHINRLRERF-PESQHTFRISTIRGLGYRLE 221


>gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 226

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 137/229 (59%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +DE
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLIHTVRGMGYVLEE--RDE 226


>gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +++ L    +   +   GE  + L +   F  I+LD+ L DI GFE
Sbjct: 3   KILVIEDDVNIAKFVKINLDKY-YETEIVHEGEKTLYLLERERFSVIVLDIMLPDISGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R  K++TPV IL+  S   DK+ GL+ GADDYI+KPFN  ELVAR+RA++RR   
Sbjct: 62  LLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRVYE 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              S      +   ++ ++L      V+G  + LT +E+Q++++L   +   + +E  + 
Sbjct: 122 FNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTPREFQILKMLMTNRKKVVKREELIA 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + K +DV I +LR+K+        YI T WG GY  
Sbjct: 182 SIWGDSFIEDTKTLDVHIRRLREKIEVNPDQPKYIHTQWGVGYYF 226


>gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 243

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R +R+ + + P   L+   +I  ++ GL +G DDYI+KPF+ EE++AR+R ++RR  
Sbjct: 78  EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAG 137

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G    I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHTPMIHTMRGAGYVLKP 241


>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
           [Leptospirillum ferrodiazotrophum]
          Length = 232

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 120/229 (52%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  I   LK E F       G  G+ L +  + DAI+LDL L  I G  
Sbjct: 4   KILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLT 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R ++      +TPV I++      D+V GL+ GADDYI KPF+ +E+VAR++A++RR 
Sbjct: 64  VNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRR 123

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +    +  G +++++       +G    LT KE+ ++  L       L +E  LN 
Sbjct: 124 ETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNT 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    E   + +DV I +LRKK+  +A    ++ETV   GY  RE  K
Sbjct: 184 VWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229


>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 240

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 66  ICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     +++  G+  +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 EAPGAPSAEDTIVEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV I +LR+ L        YI+TVWG GYV   + K
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPDGK 237


>gi|260584965|ref|ZP_05852709.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
 gi|260157395|gb|EEW92467.1| DNA-binding response regulator SrrA [Granulicatella elegans ATCC
           700633]
          Length = 236

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 14/237 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED +A+   +E+  + E +       G++G +    ++  +D +ILDL L  + 
Sbjct: 1   MHILMIEDTEAVCEMMEMFFEKEGWTAEFYHDGKEGYDAFVNHQDKWDLVILDLNLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R      P+ +L+   S  D+V GL+ GADDY++KPF+   ++ARI+A+ RR
Sbjct: 61  GMQICRQIRQMNEQVPIVMLTARDSESDQVIGLEIGADDYVAKPFSPLTMMARIKALHRR 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
                         Q  I T  +S+N       + G +I  LT KE+ ++ L++      
Sbjct: 121 IGRGISSETPTNSGQFDIETKHVSINTRTHEAFIDGVKIDGLTPKEFDLLVLMAQHPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E  L  +++     + + ID  I KLR+K+     G + I+TVWG GY   ++ 
Sbjct: 181 FSREHLLTKIWEDPFYGDERTIDAHIKKLRQKIEAV--GPHVIQTVWGVGYKFDDSG 235


>gi|229829767|ref|ZP_04455836.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
 gi|229791756|gb|EEP27870.1| hypothetical protein GCWU000342_01864 [Shuttleworthia satelles DSM
           14600]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++++A   +  L+   F+V +   G  G++     ++D  ILDL L    GFE
Sbjct: 3   KVLIIEDERSIAELEKDYLELSEFSVDIETDGAAGLKKALEGDYDIFILDLMLPGADGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +R  K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICQKIREVKDR-PILMVSARKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYSR 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       +    L ++   + V + G     T KEY+++  L+   N   +K+   
Sbjct: 122 LVGASPIKNDCLEIRGLKIDKSDRRVWINGEERTFTAKEYELLLFLAEHPNHVFSKDELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     EV  + V I ++R+K+   +    YIET+WG GY  R
Sbjct: 182 REIWNMSSNGEVATVTVHIKRIREKIEMDSSKPQYIETIWGVGYRFR 228


>gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+   A  ++  L+   + V     G DG+ L +   ++ +ILD+ L ++ G+
Sbjct: 1   MRLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYELVILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +T + +L+    + D+V+GL  GADDY+ KPF   EL+ARIR+++RR+ 
Sbjct: 61  TVLQRLRAES-ATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRND 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   DL ++         G RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QQLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDNKLIHTLRGVGYVLE 221


>gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
 gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S  F     + G   +E       + ++LD+ L    G E+
Sbjct: 2   IFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMEL 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+ +K     PV +++   +  DKV+GL +GADDY++KPF   EL++RI+A++RRS 
Sbjct: 62  LRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRSA 121

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++     G++ ++     V V G  ++LT KEY++++ L    N  LT++  L  
Sbjct: 122 KGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E + +DV +  LR+KL +A      IETV G GY +
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGDAGEQ---IETVRGVGYRM 222


>gi|91782863|ref|YP_558069.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|91686817|gb|ABE30017.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
          Length = 227

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V     G  G       ++D IILD+ L    G+
Sbjct: 1   MRILIVEDEIKTGTYLRKGLTEAGFIVDWVADGVTGQHRALTEDYDLIILDVMLPGQDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    ST V +L+    ++DKVRGL+ G DDY+ KPF+  EL+AR+R+I+RR +
Sbjct: 61  TVLKNLRRTH-STSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++L  +    QG  I LT KE+ ++ LL  R+   L +    + ++D
Sbjct: 120 PRDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  ++D  I +LR K+ +       I TV G GYVL E
Sbjct: 180 MNFDSDTNVVDAAIRRLRAKVDDN-YEPRLIHTVRGMGYVLEE 221


>gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202]
 gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
 gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
 gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL097PA1]
 gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA2]
 gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL099PA1]
          Length = 236

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R      P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIRRESG-VPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
 gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +  +++  L+ E + V+V   G +G+ + +  + D +ILDL L D+ G 
Sbjct: 1   MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLMLPDMKGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R       + +L+   S+E ++ GL  GADDY+ KPF+  ELVARI+ +VRR  
Sbjct: 61  EICQQIRAIS-DVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRIN 119

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q++ +  D  L ++   + V+VQ   +  T  E+ ++ LL   K   LT+E  +N +
Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + IDV I  +RKK+        YI TV   GY  
Sbjct: 180 LGFDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|88808922|ref|ZP_01124431.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88786864|gb|EAR18022.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 242

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 23/236 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLG-------- 53
           ++L++EDD ++  ++E  L++E F V     G + + L           D          
Sbjct: 13  KLLVVEDDDSIRETVEEALRAEGFEVRACGDGAEAMNLLTAT-------DSMGVDLLVLD 65

Query: 54  --LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
             L  + G ++ R LR    +TPV ++S   S  D+V GL+ GADDY+ KPF   ELVAR
Sbjct: 66  LMLPGLGGLDLCRQLRKLNNNTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVAR 125

Query: 112 IRAIVRRSRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
            RA++RRS+           +I +G+L + +    V   G  + L+ KEY+++ELL    
Sbjct: 126 CRALLRRSQQSESVSNQDRQVIQSGNLCLFVRECRVTRDGEDLTLSPKEYKILELLIQNP 185

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++  L  ++      + K +DV I  LR+K+        +I TV G GY  
Sbjct: 186 KRVWSRDQLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 241


>gi|330447153|ref|ZP_08310803.1| osmolarity response regulator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491344|dbj|GAA05300.1| osmolarity response regulator [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 239

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KVLVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   + ++
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238


>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
 gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 8   ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 68  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 127 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 187 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 225


>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
           UQM 2246]
          Length = 236

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ L  ++      E + V V+  G +G+   +    D ++LDL L  + G +
Sbjct: 5   RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR        P+ +++  +   D+V G   GADDY+ KPFN + L+ +++A++RR+
Sbjct: 65  VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRRA 124

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G ++   +     + ++     V  +   + LT  E++++E L  +     +++  +  
Sbjct: 125 QGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRKQLMEA 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                     + IDV I  LR+KL+ A G  + IETV   GY  RE+  D
Sbjct: 185 AIGDNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRFREDKLD 234


>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 248

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKDS-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++AL   +   L+S+ ++V     G+D     K    D ++LD  L  + G E
Sbjct: 4   RILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL+AR++ ++RR+
Sbjct: 64  LCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  GDL ++ D + V   G  I L   EY+++E          ++E  L+ +
Sbjct: 124 APERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LR KL N    ++ I TV G GY L +
Sbjct: 184 WGRDIYIDERTVDVHIGRLR-KLLNPGREQDPIRTVRGAGYALDD 227


>gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    ++  IILD  L  + G 
Sbjct: 1   MKVLVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPMLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   ELVAR + +V+R++
Sbjct: 61  KVLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQ 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   S  +  DL +++ +  V      ++L  KE+ +++ L     + +++      +
Sbjct: 121 ASATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223


>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + +E    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRRES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G   ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +++
Sbjct: 120 VKGNQRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|295428068|ref|ZP_06820700.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128426|gb|EFG58060.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|323439506|gb|EGA97227.1| respiratory response protein, SrrA [Staphylococcus aureus O11]
 gi|323441526|gb|EGA99177.1| respiratory response protein, SrrA [Staphylococcus aureus O46]
          Length = 222

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 10/222 (4%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77
           + L+ E+F ++    G++  EL     +  I+LDL L ++ G +V   LR  K  TP+ +
Sbjct: 1   MYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQVATKLREHK-QTPIIM 59

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--------GHAQSLIVT 129
           L+      ++V G +SGADDYI KPF+  E+V R++A++RR++         HA+ +I  
Sbjct: 60  LTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTTVEQSEPHARDVIEF 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
             L ++ DA  V      ++LT KEY+++  L+   N    +E  L  ++      +++ 
Sbjct: 120 KHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLLKEVWHYEFYGDLRT 179

Query: 190 IDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENAKDETC 230
           +D  + +LR+KL+  +    + I+TVWG GY     + DE  
Sbjct: 180 VDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEVKSNDEPA 221


>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 298

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L I+DD  +   ++  L+   + +       +     +    D +ILDL L D  G E 
Sbjct: 75  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 134

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RSR 120
              L+      PV +L+    + DKV GL+ GADDY+ KPF   EL+ARI+A +R     
Sbjct: 135 CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 194

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
           G A  L+  G+L ++L  +TV+V G  ++LT KE+Q++  L   +N  +T+E     L+ 
Sbjct: 195 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWR 254

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D +     ++IDV I  LR+K+       ++I TV GRGY   E
Sbjct: 255 DSKIYSWSRVIDVHIQHLRQKVEETPSQPHHIVTVPGRGYRFME 298


>gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 237

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/228 (39%), Positives = 136/228 (59%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L ++++  L   NF + V   GEDG+     Y +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR  +I  P+ IL+   S +DKV GL +GADDY++KPF+ EEL+AR+ A++RRS 
Sbjct: 61  ELITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N     V+  G  ++L+  EY++ E   L      +K + + H+YD
Sbjct: 121 GKASPLVYNGPFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL         IET+ G+GY L+  A+ E
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQLGLIETLRGQGYRLKPLARGE 227


>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 222

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A++  +   L+ E + V V   G   + L      D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGLPGMDGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 62  VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGTP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +    + +++++    +    ++LT KE+ ++ +L       +T++  +  ++D 
Sbjct: 122 DLGNGVH--GVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQLMREVWDT 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 K +D+ I  LRKKL + A    +I TV G G+   
Sbjct: 180 TWWSSTKTLDMHISWLRKKLGDEASRPRFITTVRGVGFRFE 220


>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
 gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
           thuringiensis serovar andalousiensis BGSC 4AW1]
          Length = 227

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++L L+ E +   +   G + +E      +D I+LD+ L +I G E
Sbjct: 4   RILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R+     P+ +L+   S+ DKV GL  GA DYI+KPF  EEL+ARIRA +R S  
Sbjct: 64  VLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNV 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S     DL ++   + V+     I LT +E+ ++  L   +N  L +E  + ++
Sbjct: 124 VKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DV+I  LRKK+         + TV G GYVL+
Sbjct: 184 WGFDYYGDTNVVDVYIRYLRKKVDCNVDVP-LVHTVRGVGYVLK 226


>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+   + + L+   ++    + G  G  L      D I+LDL L  + GF 
Sbjct: 3   RILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR        PV +L+ +   ++KV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILSYGPLTLVPERFEAIWLDKTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++      +++ I V +  LR KL        YI+TV+G GY L   A+
Sbjct: 183 LKEVWGYDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPAE 234


>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
 gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
          Length = 236

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  ++  +  +++   + V     G + +   +    D ++LDL L  + G  
Sbjct: 9   KILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTGEA 68

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           VL  +R   K   PV ILS   S++DKV+ L+ GADDYI+KPF+ EE++AR+ A +RR  
Sbjct: 69  VLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRYT 128

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ++          +LS+   ++ VEV G  + LT  EY ++ LL        ++E  
Sbjct: 129 KEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREHL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++ G    E   ++V +  LRKK+  A   ++YI+TVWG G+ L 
Sbjct: 189 YEQVWKGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236


>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 250

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D++ +   + L LK ENF ++     G + + L K + FD I+LD+ L DI GF
Sbjct: 18  KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +RR  
Sbjct: 78  ELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQH 136

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +        +     S+      + V    +H T KE +++  L    N   T E  
Sbjct: 137 MTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQL 196

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 197 YEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKEQ 250


>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 117/225 (52%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +EL L ++ F+V      +D ++L +   FD +ILD+ L D+ GF 
Sbjct: 7   KIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLEDMDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E++AR++  +RRS+ 
Sbjct: 67  VCKKIREKHY-FPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                            L ++  +    +   +I LT  E+++I  L   +   ++ E  
Sbjct: 126 YNKTEKIQDNETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  +       +   I ++R K++++     +I+TVWG GY
Sbjct: 186 FENIWKEKYLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGY 230


>gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
 gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri
           ATCC 43970]
          Length = 220

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L SE +         +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+     ++V I  LR+KL     GK+ I T+ G GY L   +
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGVGYRLETPS 220


>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis IP 32953]
 gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis YPIII]
 gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
          Length = 239

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 74  CREIRRFS-DIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L +N        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
 gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
          Length = 232

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDDK +   +++ L+S+ + V++   G +G+E+ +  +    I+D+ +  + G  
Sbjct: 5   HILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIMMPRMDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTMKLRE-KYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++ V G L +N D   V + G  + LT  EY+++ LL+       + E   
Sbjct: 124 FMEKLEVRENVHVIGGLEINEDTVEVSIDGKPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          I V +  +R+K+        Y++ VWG GY + + 
Sbjct: 184 ERVWQ-EKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEKQ 231


>gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia
           prowazekii str. Madrid E]
 gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia
           prowazekii]
 gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22]
          Length = 237

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 131/223 (58%), Positives = 169/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  +A+ IE+ L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEDESEMANLIEITLASEGIVCDKASVGVEGLRLGKVGIYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 TVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
 gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
          Length = 219

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 113/220 (51%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL   I   LK E + V     G   +       FD  +LDLGL  + G 
Sbjct: 1   MRILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR A    PV +L+   +  +++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  +    + ++  ++ V  QG  I L  KE+ ++  L  +    LT++     LY 
Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ++V +  LR+K          I TV G GY+
Sbjct: 181 WSEEVESNALEVHVHHLRRKF-----FPELIRTVRGVGYM 215


>gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 219

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +       ++AI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIVEALEQNGWTPELSTDGIDALYRATSENWEAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY +KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  QG  I LT  E++++          +++   + H+Y 
Sbjct: 121 GNASPVIQIGNLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKVIKTVRGLGYQL 216


>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
 gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 226

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ DD  +   I + L++E + V     G + ++L +   F+ +ILD  L  + G   
Sbjct: 4   ILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLIRSISFELVILDSMLPQMDGINA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    +TP+ +LS      DK+ GL  GADDY+ KPFN  EL+AR++A ++R    
Sbjct: 64  CIKIREIS-NTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQRQSLI 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    SLI   DL ++    +V ++ + I LT  E+ ++ELL+       + +     +
Sbjct: 123 GKEEFNSLIFFKDLVIDKTKHSVTLKENNISLTPLEFSILELLASHPGQVFSFDKIYESV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++         + V I  LR+KL  +     YI+TVWG GY +
Sbjct: 183 WEDPIGYSDNTVMVHIRNLREKLEKSPRDPQYIKTVWGVGYKI 225


>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  I        + ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    LS++  +  V    + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVDEVIEMRGLSLDPSSHRVTTDEYALDMGPTEFKLLHFFMTHSERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-SGHDKMVQTVRGTGYRF 225


>gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   ++L L  E + V     GE G++L +  + D +++D+ L  + G E
Sbjct: 4   RILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMGGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ ILS  +   DKV GLQ GADDY+ KPF  +EL+ARI A++RR R 
Sbjct: 64  VVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRRA 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++   G + ++LDA+   V G  + LT +E+ ++       +   ++E  + 
Sbjct: 124 RGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLME 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  R     + +D F+ +LR  + + A    ++ETV G GY  
Sbjct: 184 AVWGSRYFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRF 228


>gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 131/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA  +   L++E F V V   G DG+ + +   FDAI+LD+ L    G+
Sbjct: 1   MRLLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIMLPGANGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR     TP+ +L+    I D+V GL +GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+ V  +G +I LT +E+ ++E L       L K   L H++D
Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  I++V++ +LR KL         IETV G GY L  +A
Sbjct: 181 FDFDGDPNIVEVYVRRLRTKLGR-PTDPPVIETVRGAGYRLVAHA 224


>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 226

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L  + G E
Sbjct: 3   RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+   S  DKV GL+ GADDY++KPF+  ELVARIRA++RR   
Sbjct: 63  VCRTLRTRS-TVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   + +  G + ++++   V V G  + L  KE++++E+        LT+   ++ +
Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K +DV + +LR K+ +  G   ++ TV G GY    
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGYKFEP 226


>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
           DJ]
 gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
           DJ]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   +     +  +    +      D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +++T  P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTA 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
 gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus bovienii SS-2004]
          Length = 239

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L        IILDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ ++S      D++ GL+ GADDY+ KPFN  EL+AR+RA++RR   
Sbjct: 66  ICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQSH 125

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +++  G   ++L  + +  +  ++ LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPTPDNAVVKFGKFKLDLGTREMFHEDEQLSLTSGEFSVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYGAMERSIDVQVSRLRRLIEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 250

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 11/238 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   ILL++D++ +   + L LK ENF +V     G + + L K + FD I+LD+ L D
Sbjct: 12  MRTENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPD 71

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I GFE+ R +R    +TP+  ++  SS  DK+ GL  G DDYI+KPFN  E+ ARI   +
Sbjct: 72  IDGFELCRQIR-NYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQL 130

Query: 117 R------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R       +R    S +     S+      + V G  +H T KE +++  L    N   T
Sbjct: 131 RGQSMLLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFT 190

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            E     ++      + K + + I KLRKK+        YI  + G GY    + K++
Sbjct: 191 AEQLYEQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKEQ 248


>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   L+     V V + G   + +      D I+LD+G+ ++ G E 
Sbjct: 5   ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMDGLET 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R      P+  LS      D+V GL+ G DDY++KPF+  ELVAR+  I++R R  
Sbjct: 65  CRRIRKTS-EVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRPK 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G+LS++L +      G  + LT  E+ ++E  + R N   T+E  L   Y
Sbjct: 124 EAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASAY 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +       + ID  I  +R KL+ A GG   IETV G G+ L
Sbjct: 184 NNAINVSDRTIDSHIRNIRAKLALAGGG-GCIETVHGIGFRL 224


>gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum ATCC 824]
 gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding
           domain) [Clostridium acetobutylicum EA 2018]
          Length = 221

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD+ L+  ++  LK  N    ++  GEDG+   +   +DA+ILD+ L  + G 
Sbjct: 1   MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R   ISTPV +L+  +  +D+V GL SGADDY+ KPF  +EL AR+ A++RR+ 
Sbjct: 61  TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL+++  AK+V+V    I LT +EY ++ELL       ++ E  + H++ 
Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D     +I V I  LR+K+   +GG+  IET+ G+GY L
Sbjct: 181 DNDNQFSNVIRVHIANLRRKIK-CSGGETLIETLKGKGYRL 220


>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 130/231 (56%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL-CKFYEFDAIILDLGLTDIPG 59
           MR+L+++D+K +   + + LK+E+++V     G + ++L  K  + D ++LD+ +    G
Sbjct: 1   MRVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            EVL  +R   ++ PV  L+  ++  DK+ GL +GADDY++KPFN  E++ARI+++ RR 
Sbjct: 61  LEVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQ 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +    S +  G +++  D+ TV  + G  + LTG E+ ++ LL+   N   + 
Sbjct: 121 QLLNQPPQAKDTSKVEVGSITIEKDSHTVTTLSGQDVQLTGSEFDILYLLATHLNQVFSA 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++   ++P  + + V +  LR KL  A  G+  ++TVWG GY + 
Sbjct: 181 EDILQEVWPEGNKPSSQTVMVHVSHLRDKLEAATNGEKIVKTVWGLGYKIV 231


>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia pyrifoliae Ep1/96]
 gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           pyrifoliae DSM 12163]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++        +  + L      D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L+++  +  V      + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALELN-GHDRMVQTVRGTGYRF 225


>gi|223984078|ref|ZP_03634232.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
 gi|223963953|gb|EEF68311.1| hypothetical protein HOLDEFILI_01524 [Holdemania filiformis DSM
           12042]
          Length = 234

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+  + ++IE+ LK++ + V+    G++G+E+         I+DL +  + G  
Sbjct: 5   QILVCEDEVEIGNAIEIYLKNQGYGVHRAYNGKEGLEVLARQTIHLAIVDLMMPVMDGLT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           ++  LR      PV +LS  S   DK+ GL  GADDYI+KPF   EL+AR+ + +RR   
Sbjct: 65  MIMTLRQ-SYDFPVIVLSAKSEDMDKITGLNMGADDYITKPFTPMELLARVNSQLRRYAK 123

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  +   + +   G L +N D K V + G+ + LT  E+++++LL        + E
Sbjct: 124 FLSLKEHQSEDEQVYTVGGLELNNDTKEVSLDGNPVRLTPIEFRILQLLMKNPGRVYSAE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++  +      + V I  +R+K+        Y++ VWG GY + +
Sbjct: 184 EIYERVWN-EEAIATDTVMVHIRNIREKIEIDPRNPRYLKVVWGVGYKIEK 233


>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  +E  +  + D +ILDL L  I G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  H
Sbjct: 64  CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVH 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I+ G L ++L  + V  +G  + L+  EY ++ +L+      L+++  L  L
Sbjct: 124 EPRLDSEQILVGGLRIDLAERLVSWRGEEVELSSGEYNLLVVLARNAGEVLSRDRILQQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  ++AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDSAGEARKIKTVWGKGYLF 226


>gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ LA  I    ++E F V +   G+ G  L +   +D +ILD+ L  + GF
Sbjct: 1   MKLLVVEDDQKLASFISKGFEAEAFEVTIAPDGQAGWRLFQANPYDVVILDVNLPYLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+ +  + DK  G  SGADDY+ KPF   EL+ R++A+ RR  
Sbjct: 61  ELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRHY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q ++   DL ++ DA+ V   G  I LT  EY ++E L   +   +++      +++
Sbjct: 121 RERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV++  LRKK+      K  + TV G GYVLRE 
Sbjct: 181 VNLATSTNVIDVYMGYLRKKVDRDFASK-LLHTVVGMGYVLREE 223


>gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ L + + +D +ILD+ L  I G+
Sbjct: 1   MRILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINLPHIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    ST V +L+    + DK+RGL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  GVLGQIRQDS-STRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSE 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ LL  +    L++   ++ ++
Sbjct: 120 QAPVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +++V I +LR K+ +    +  I T+ G GYVL E
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFERKLIHTLRGVGYVLEE 222


>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
           amylovora ATCC 49946]
 gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora CFBP1430]
 gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
           amylovora ATCC BAA-2158]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++        +  + L      D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L+++  +  V      + +   EY+++           ++E  LNH+
Sbjct: 124 APMAVEEVIEIQGLTLDPSSHRVMSGTQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-LSGHDRMVQTVRGTGYRF 225


>gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202]
 gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202]
          Length = 221

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   I+L L  +NF V     G+ G +     E+DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDKLIGEGIKLGLTKQNFAVDWFTDGKLGFDALFSAEYDAVILDLSLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   ++++++ G  +GADDY+ KPF   E+V R++A++RRS 
Sbjct: 61  DILKQWRKENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S IV GDL ++   + V + G  I LT KE++++EL +  K+  L + +    LY 
Sbjct: 121 QQVSSEIVIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V+I  LRKKL     GK++++TV G GY L
Sbjct: 181 WDNEVSSNALEVYIHNLRKKL-----GKSWVKTVHGVGYKL 216


>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +IE+ L++E + ++    G + +EL +  E   II+D+ +  + G 
Sbjct: 1   MNILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
                +R  K + PV +LS  S   DK+ GL  GADDYI+KPFN  EL+ARI++ +RR  
Sbjct: 61  RATMKIREEK-NIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFT 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++  TG L+++ ++K + V G  IHLT  +Y++++LL+       + +   
Sbjct: 120 ILGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I K+R+K+        Y++ VWG GY + +
Sbjct: 180 EKVWNETAFSPENTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKVEK 227


>gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Herminiimonas
           arsenicoxydans]
 gi|133738671|emb|CAL61716.1| Transcriptional regulatory protein CusR [Herminiimonas
           arsenicoxydans]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F V   + G DG  L     +D IILD+ L DI G+
Sbjct: 1   MKLLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR A  + P   L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGI 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++L  +     G R+ LT KE+ ++E L   K   L + +  + ++
Sbjct: 121 PSPLVDRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     +  +IDV I +LR K+ +       I T+ G GYVL + 
Sbjct: 181 DINFNSDTNVIDVAIRRLRSKMDDD-YEPKLISTIRGVGYVLEDP 224


>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
 gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis EO147]
 gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia
           oklahomensis C6786]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDELKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG+ I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYL 233
              + +  ++D  I ++R K+         I TV G GYVL +    E+CE L
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQD-YEPKLIHTVRGMGYVLEQRG--ESCESL 229


>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
 gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
           SKA34]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTALDDVIDVQGLKLDPVSHRVTSGDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  + G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SGGHDKMVQTVRGAGYRF 225


>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
 gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   I+  L+++ F V     G   +E       D IILDL L    G  
Sbjct: 3   KILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLPGKDGLT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R  K     PV +L+  S   DKV GL+ GADDY++KPF+ +EL AR++A++RR+
Sbjct: 63  ICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRRT 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      I  G L +   +  V   G ++ LT KEY+++  L+  KN  LT++  L+
Sbjct: 123 EMIKSSDTEEIAVGSLRILPGSFEVYKNGKKLSLTLKEYELLLYLANNKNKVLTRDQLLD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      E + +DV I  LRKK+ +    + YIETV G GY L EN
Sbjct: 183 EIWGYEYYGETRTVDVHIRYLRKKIEDD--QEKYIETVRGVGYRLVEN 228


>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
 gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 7/237 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  +A  + + L+   + V   + G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVDGFT 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR        PV +L+ +   +DKV G  SGADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  VCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRRT 123

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 124 DRIPQAAKHAEILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           L  ++    + +++ I V I  LR K+        +I+TV+G GY L   +     E
Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRFIKTVYGAGYCLELPSNGSKSE 240


>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
 gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +   + ++L  E + V     G + ++L      D I+LD+ + ++ G++
Sbjct: 4   RILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGYQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               LR    + P+  L+      DK  G  SGADDY++KPF+  EL AR++A++RR + 
Sbjct: 63  TCLKLRETS-NVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121

Query: 122 H----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +           +  +    L++    +  EV G  + LT  E+ ++  L        + 
Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181

Query: 172 EMFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E      ++          I V I  LRKK+        YI+T+WG+GY   
Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233


>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
 gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
 gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A +  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DMPGRESYIQTVRGMGYVIRE 227


>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-DIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A GG++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 223

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   L    + V     GE G+ + +   FD +I+D  +  + G 
Sbjct: 1   MRILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
           +V+  LR     TPV  LS +  I D+V GL++GADDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  QVVETLRREGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +P+  +IDV I +LR K+ +    +  ++TV G GY L  
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223


>gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya]
 gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FNTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
 gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + ++    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIREES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +++
Sbjct: 120 VKGNQCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGYRF 223


>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
 gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A++  I + L+            E    L      D ++LD  L    G   
Sbjct: 5   ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  + +   P+ +L+     +DKV GL+ GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTV--EVQGHRI--HLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + ++    L ++     V    +G+ I   L   E++++           ++   L
Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAAAEGNEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++      E + +DV I +LR  L  A G    IETV G GY L  +A
Sbjct: 185 DQVWGDHVFVEERTVDVHIKRLRAALKPA-GCDAMIETVRGSGYRLARHA 233


>gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 232

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           RIL+I+DD  L   ++  +   N    +   G+ G+     +   +  IILD+ L ++ G
Sbjct: 4   RILIIDDDVELCSLVKKCVSQVNLETDMAYNGQTGLLQVMNENDSYSLIILDVMLPNMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+VL  +R    + PV +L+   S  DKV GL  GADDY++KPF+  EL+AR+++++RR 
Sbjct: 64  FQVLSEIR-KYSNVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLIRRY 122

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S+++   + ++ + +TV V+   I LTGKE+ ++  L+  K    TK+   
Sbjct: 123 TTFNSRDSVSILIFKGIVIDKEIRTVHVEDKLIDLTGKEFDLLVFLASNKGRVFTKKQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +++     +   I  FI KLRKK+   +    YI TV G GY   + A
Sbjct: 183 TQVWNDDYSFDDNNIMSFISKLRKKIEPNSEQPFYILTVHGVGYRFNKEA 232


>gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 251

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIED+  +A  IEL L  E+F + V   G  G++L    E+D I+LD+ L  + G  
Sbjct: 29  RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K  TP+ +L+   SI D+V GL SGADDYI KPF  EEL+ARIR + RR   
Sbjct: 89  VCQKIRSVK-KTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEE 147

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++    L V ++ + V      + LT +EY ++       N  L +++ L+ +
Sbjct: 148 QENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E  ++DV++  LR K+ +     +YI TV G GYV+R+
Sbjct: 208 WGFEAAVETNVVDVYVRYLRNKI-DFPNEDSYISTVRGIGYVMRK 251


>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
 gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARE-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   + L+L+   +     +   + +        D ++LD  L    G +
Sbjct: 4   RILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++ +R      S PV +L+     ED+V GL+ GADDYI+KPF+ +E+VAR+RA++RR 
Sbjct: 64  FIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIRRI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I    L ++  +  V      + +   E++++     R      +E  LN++
Sbjct: 124 VPTTTKEIIEIQGLILDPSSHRVIANEQVLAMGPTEFKLLHFFMARPERVYNREQLLNYV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    I+TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKVLEKN-GHDKMIQTVRGAGYRF 225


>gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
 gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
           SK60]
          Length = 245

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPGF 60
           +LLIEDD  LA  I   L    + V       +G+E         D +ILDL L D+ G 
Sbjct: 11  VLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMDGM 70

Query: 61  EVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           +V + +R  K S    T + +L+      D+V GL+ GADDY+SKPF   EL+ARIRA++
Sbjct: 71  QVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRAVM 130

Query: 117 RRS----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RR         +  +V G L V  D+  V +    + LT  ++Q++   +      L++E
Sbjct: 131 RRHDLPLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFATHSGKVLSRE 190

Query: 173 MFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 191 QLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240


>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
 gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVISGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225


>gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 246

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A +I   L++E F V     G   +   + +  + ++LD+ L    G E
Sbjct: 20  RVLVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     + +  GDL ++   + V V    +HLT  E+ ++  L+      L++E  
Sbjct: 139 ATIAATAPRGATLRLGDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A+
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAQ 245


>gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 224

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V + + G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
 gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD AL+  +E   ++E +NV  T  G++ + L      D IILD  +    G E
Sbjct: 5   KLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  V+ +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E++ +DV I +LRK +    G K+ I TV   GY L 
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKAIG-LEGAKDPIRTVRSAGYALE 227


>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 126/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + +  D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPRLSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R L   +    + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR 
Sbjct: 63  VCRKL-ENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q+ I    L +NL  +TV  +G  + LT KE+ +I LL+       ++E 
Sbjct: 122 VENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREA 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            L  ++D       + +D+ + +LRKKL +     + I+TV+G GY 
Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGDL---HDVIQTVYGIGYK 225


>gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13]
 gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo]
 gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1]
 gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94]
 gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99]
 gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99]
 gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo]
 gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99]
 gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +      +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 222

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  ++  L+ E +   +   G+  +E  +    D I+LDL L  + G  V
Sbjct: 6   ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLPGLDGLSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R  R      P+ +++      D++ GL+ GADDY+ KPF+  E+VAR++AI+RR RG 
Sbjct: 66  CREARRF-TDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVRGA 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +    L ++       ++G  + LT  E+Q++++L+       ++   ++ +Y   
Sbjct: 125 P---VEERALMLDPSRYRAVLRGKPLELTAIEFQLLKILADEPGRIFSRSQLMDGIYQDH 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                + +D  I KLRKK++     ++YI +V+G GY 
Sbjct: 182 RIVSDRTVDSHIKKLRKKMTELFPDQDYIHSVYGLGYK 219


>gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19]
 gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870]
 gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513]
 gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10]
 gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94]
 gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292]
 gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915]
 gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1]
 gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68]
 gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19]
 gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457]
 gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A]
 gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915]
 gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038]
 gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
 gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
 gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28]
 gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +A  I +  + E FNV     G+  +   +  EF   ILD  +  + G++V
Sbjct: 10  ILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSGYDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++    +ED+V+ L +GADDY+ KPFN  EL+AR+RA+VRR+   
Sbjct: 70  CQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNSNT 129

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +     +  G LS+N       V G  IHLT +E+ ++  L  +    +++E  +  ++ 
Sbjct: 130 SNKKALLEYGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++ ++D +I  LR KL     G   I+TV G G+ LRE+
Sbjct: 190 EDYFGDITVVDTYIKYLRVKLRTHGLG-EMIQTVRGVGFTLRES 232


>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 225

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   I + LK E + V+  + G +   +         I+D+ + +  G+E+
Sbjct: 4   ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNGWEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++     EDKV+G Q G DDYI KPF+  EL+ R++A++RR + +
Sbjct: 64  CKEIREL-YDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKIN 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G++ ++ ++  V +    I    KE+Q++  L+       +++  +  ++   
Sbjct: 123 TTNKVTIGNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWGSD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +D  I K+RKKL+        I T+ G GY L 
Sbjct: 183 FEGFDRTVDSHIKKIRKKLNQQMAFD--ILTIRGLGYRLE 220


>gi|256762258|ref|ZP_05502838.1| DNA-binding response regulator [Enterococcus faecalis T3]
 gi|256683509|gb|EEU23204.1| DNA-binding response regulator [Enterococcus faecalis T3]
          Length = 242

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 123/239 (51%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + 
Sbjct: 4   MNILMIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASPEKWDMITLDLNLPSMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 64  GMAVCREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 123

Query: 119 SRGHAQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           +     +            ++T    +N   +   +    I  LT KE+ ++  L+ +  
Sbjct: 124 AEVAEAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPR 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 184 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 240


>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
 gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
          Length = 233

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  +   +KS  +       G +     + +  D ++LD  L D+ G  +
Sbjct: 8   ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R  +   + PV +L+  +  EDKV GL  GADDYI+KPF+ +ELVARI A++RR  
Sbjct: 68  LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKA 127

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+SL+  G ++++ ++  V++    I +   E+++++ L    +   ++   L+ ++
Sbjct: 128 PERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + + E + +DV I +LRK L    G +N I TV G GY+L E  K E
Sbjct: 188 SNQLDIEERTVDVHILRLRKALK---GQENLIRTVRGMGYMLSEKDKSE 233


>gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016]
 gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   L+   + V+    G + ++L +      I+LDL L DI G +
Sbjct: 6   KILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLMLPDISGED 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR  K   P+ +L+     +  + G   GADDY++KPF+ ++LVAR+ A +RR+  
Sbjct: 66  ICKMLR-KKSRVPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRRTEE 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A           GDL +N+    V   G  ++LT  EY ++  L      T T+E  +N
Sbjct: 125 EAIPLSNILSFNNGDLVLNVIKHEVRKNGITVNLTSSEYNILMTLVKYPQKTFTREELVN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +       +IID  +  LR+K+ + +    YI TV+  GY  
Sbjct: 185 LALEEDFNGFDRIIDAHVKNLRQKIEDNSREPKYILTVYKVGYRF 229


>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 235

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G +G++  + +  DA+ILD+ +  + GF 
Sbjct: 9   RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L+ LR   +  PV  L+   ++EDK+ GL  GADDY++KPF+ EE+V R+R I+RR   
Sbjct: 69  LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     + I   D+ ++ D + V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++     EV +++ ++  LR+K+    G    I T+ G GYV+RE 
Sbjct: 189 VWNYDFGGEVGVVESYVSYLRRKV--DTGETPLIHTLRGVGYVMREP 233


>gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  +    +     V +   GE+G+ L    ++D +++D  L    G 
Sbjct: 13  MRLLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPARDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR    +TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 73  SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++    DL ++  A  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 133 SQGAETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         I TV G GY++R  A
Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGFDVP-LIHTVRGAGYMVRAGA 237


>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
 gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
          Length = 229

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTALDDVIDVQGLKLDPVSHRVTSDDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  + G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-SGGHDKMVQTVRGAGYRF 225


>gi|225352770|ref|ZP_03743793.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156377|gb|EEG69946.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 244

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD+AL   + ++L+SE F       G   +E+    + D ++LD+ L  + G +V
Sbjct: 13  IMIVDDDQALGEMLSIVLESEGFKTVTCLDGWRAVEMFPTLQPDLMLLDVMLPGLDGVQV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    +TP+ +L+  S   D V+GL++GADDY+SKPF   EL+ARIRA +R  + +
Sbjct: 73  AQRIRQ-NSNTPIIMLTAKSDTTDVVKGLEAGADDYVSKPFEVVELMARIRARLRMPKVN 131

Query: 123 AQSLIVTGDLS---------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A +    GDL+         ++    T    G  + LT  E++++ +L+      L++  
Sbjct: 132 APAGKDEGDLTERLQCGTLVMDRAEHTATKDGVDLQLTPTEFELLYVLAAHAGEALSRAN 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L  ++      + ++++V + +LR K+         ++TV G GY     
Sbjct: 192 LLKRVWGYESGGDTRLVNVHVQRLRMKVETDPENPRIVQTVRGIGYKFVAP 242


>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
          Length = 226

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + V     G DG+ L     +  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR A    PV  L+   S+ED+V+GL++GA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QVLRALRTA-YQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L ++   ++V   G  I LT KE+ ++ LL+ R    + +    + ++ 
Sbjct: 120 P-VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   +DV I +LR K+ +    K  I TV G GY L+
Sbjct: 179 INFDSETNTVDVAIRRLRAKV-DDPFEKKLIMTVQGMGYRLQ 219


>gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
 gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii
           ATCC 43969]
          Length = 220

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L +E +    T    +   L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+     ++V I  LR+KL     GK+ I TV G GY L   +
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLEAQS 220


>gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
 gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum
           3TCK]
          Length = 239

 Score =  263 bits (673), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 111/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSIDSKIVEFGEFRLNLGTREMFRGEEPMPLTSGEFAVLKALVTNSREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   +  +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGNE 238


>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + ++ D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPRLSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R L   +    + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR 
Sbjct: 63  VCRKL-EDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     Q +I    L++NL  +T+  +G  + LT KE+ ++ LL+       ++E 
Sbjct: 122 PEAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            L  ++D       + +D+ + +LRKKL N       I+TV+G GY 
Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGN---QHEVIQTVYGIGYK 225


>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 248

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L    F+V     G D I   + ++ D ++LD+ L D  G+E
Sbjct: 12  KILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDGYE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV  L+    + DK++GL +GADDY++KPF+ EE+V RI+ I+RR+  
Sbjct: 72  VLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTTP 131

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    I   DL +N D   V  +GH + L+  EY+++  L +     ++K   L+H++
Sbjct: 132 SEEDSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG----GKN-------YIETVWGRGYVLR 222
           D     E  I++ +I  LR+K+ +A G               I T  G GYV+R
Sbjct: 192 DYDWIGEASIVESYISYLRRKIDSADGLGITDPKEVAALVPLIHTKRGIGYVMR 245


>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 245

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L+ E + V V   G +G+ L K      I+LDL L DI GF V
Sbjct: 14  ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR   + TPV IL+ M    DKVRG + GADDY++KPF   E +AR++A++RRSR  
Sbjct: 74  LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSRTA 133

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A +    G+++++L  ++V ++G  + L  +EY ++  L  R     ++E
Sbjct: 134 KPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIASRE 193

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++   D    + +D  + +LR+KL        ++ TV   GY +
Sbjct: 194 ELLREVWGYDDSVVSRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRM 242


>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 232

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 129/228 (56%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD  L   +   L+ +++ +   + GE  ++      +D I+LD+ L  + G 
Sbjct: 6   MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A ++TPV +L+    +ED+V+GL  GADDY++KPF+  EL+ARIRA++RR  
Sbjct: 66  SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR-D 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS+N  ++TV +    I LT KE+ ++E L   + + +++     H++ 
Sbjct: 125 GKRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWG 184

Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225
              +P      +DV I  LRKK+S         I T+ G G+++ +  
Sbjct: 185 NEFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDDTP 232


>gi|218676350|ref|YP_002395169.1| putative two-component response regulator [Vibrio splendidus LGP32]
 gi|218324618|emb|CAV26167.1| putative two-component response regulator [Vibrio splendidus LGP32]
          Length = 243

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  LA  +++ LK +  NV   +  E   +L    +FD ++LD GL D  G +  
Sbjct: 13  LLVEDDDDLAELVQMHLKFQGHNVERANTIEKAQDLYLDGQFDLVVLDRGLPDGDGLDFC 72

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R +R  +  TPV +L+   +  DKV GL++G DDYI+KPF+  E  AR+R ++RR     
Sbjct: 73  RMIRQKEDWTPVLMLTARDAELDKVSGLEAGVDDYITKPFSVLEFQARVRNVLRRLSHVE 132

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +S++  G L +  +   V +    + LT  E+ ++  L+ R     +K+  
Sbjct: 133 SVTQEAMTTESIMNFGGLIIQPERHQVSLNNQDVPLTATEFTLLHFLATRPGRVYSKDEL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+H+++         +   + +LR KL+      ++I+TVWG GY     A
Sbjct: 193 LDHVWNTHHSGYHHTVCSTVNRLRTKLAMPNSDDDFIKTVWGVGYKFESKA 243


>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+++   +   L++++F+V      E+   + + +    ++LD+ +    GFE+
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R      P+  LS  S   DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 67  CRRIRAESP-VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSATR 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   + ++  G L +NL  + V V G+ + LT KE++++ + +       T +  L   +
Sbjct: 126 RPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKFW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG    +   I V + +LR+K+        ++  VWG GY   
Sbjct: 186 DG--VGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFE 226


>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
 gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. 217]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+++ F+V     GE+ + +      D I+LD  + ++ G EV
Sbjct: 8   VLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R      P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG++ + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQY-GGEDPLRTVRGAGYAL 228


>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 112/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   +     +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  +     P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PSDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
 gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
           [Marivirga tractuosa DSM 4126]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 111/224 (49%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   +E  L  E + V     G+  +E  + ++   I+LD+ + +  G E
Sbjct: 8   KVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDGVE 67

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             R LR      ++ +  L+  S    +V   ++GADDYI+KP     L++RI A  RR 
Sbjct: 68  TCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRRD 127

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    + I  G L+++  + TV V G ++ L  KE++++  L+   N    ++  L +
Sbjct: 128 VKKQKDNNKITIGGLTIDRTSYTVSVDGKQVSLPKKEFELLYFLAQNPNKVFNRDDLLQN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +DV + K+R+K+ +      YI TV G GY  
Sbjct: 188 IWGSDVYVLARTVDVHVRKVREKVGDG-----YISTVKGVGYKF 226


>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + V     G + IE           +LD+ L D  G 
Sbjct: 3   KILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTSGI 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +  V +L+  S  +DK+ G QSGADDYI KPF+ +EL+ R++A++RR +
Sbjct: 63  EICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALIRRVK 122

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + S    +I T    ++ + + +      + LT  E+ +++ L    + +L+++  L 
Sbjct: 123 KDSDSKKNNMINTPPFLLDPNKRKLYKNEVEVDLTPTEFSIVKYLMTNDSQSLSRDQILE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++   D  + KI+DV I ++R K+ +      +I+TVWG GY  R +
Sbjct: 183 EVWGSADLYDYKIVDVNIRRIRNKIEDDPSKPKFIQTVWGYGYSFRRD 230


>gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
 gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC
           43969]
          Length = 220

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   I+  L    F+V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDKLIGDGIKAGLIKMGFSVDWFTDGQQGLSALASAPYDAVVLDLSLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++++V GLQ GADDY+ KPF   E+VAR++A++RR  
Sbjct: 61  DILRTWRRNGHDEPVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G +S++    +V  QG  ++L  KE+ ++ELL   +   L + +    +Y+
Sbjct: 121 GQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE     I+V I  LRKK      G ++I TV G GY L E
Sbjct: 181 WDDEVSSNAIEVHIHHLRKKF-----GSHFIRTVHGIGYTLGE 218


>gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 233

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD A+   I+  LK EN  +     GE+   L +   FD +ILD+ L D  GF+
Sbjct: 5   KVLLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLGDTDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      P+  LSG     DK+  L  GADDYI+KPF+   LVA+I+A +RR   
Sbjct: 65  VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I+ G   +N +   +      + L+ KE  +++      N   +K+    
Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +   I V++  LRKKL +      + +TVWG GY  
Sbjct: 185 KVWN-NSIVDDNTIMVYMRHLRKKLEDDPKNPKFFQTVWGIGYKF 228


>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   + ++L+   F        ED  +       D I+LD  L  + G E 
Sbjct: 6   ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+        P+ +L+     EDKVRGL+ GADDY++KPF+ +ELVARIRA++RRS 
Sbjct: 66  ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRSG 125

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I  GDL ++ +   + +   ++ ++  E+++++      +    +   L+ ++
Sbjct: 126 KINDLAQITLGDLVLDTEQHRLSIGDKQLEVSPTEFRLMQFFMTHPDKVFNRTQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L    G ++ ++TV G GY  
Sbjct: 186 GRSVYIEERTVDVHIRRLRKILGEH-GREDLVQTVRGFGYRF 226


>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 252

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 5/221 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD  +   +   LK+  F V     G + + +      D ++LD  L  + G EV R
Sbjct: 1   MVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLEVCR 60

Query: 65  ALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +R        PV +L+ +   ED+V GL +GADDY++KPF+  ELV R+RA++RR+   
Sbjct: 61  RIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVPE 120

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A  +   V G   ++L A+ +   G  + LT +E+ ++  L         ++  L  ++ 
Sbjct: 121 AVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  + V + +LR+K+         + TVWG GY  
Sbjct: 181 WE-IGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 220


>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 235

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           +IL+ ED+ A+   + + L    ++V   D GE  ++  +    +FD  ILD+ +  I G
Sbjct: 3   KILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           F+V + LR       + +LS  +   DKV GL  GADDY++KPF+  EL+AR+ ++ RR 
Sbjct: 63  FQVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S  + +  + +G+ ++NL  + +   G  I LT  E+Q++E         L + 
Sbjct: 123 ALAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALDRI 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LNH++      E KI+DV I +LR K+ +      +I TVWG GY  
Sbjct: 183 DILNHVWGDAYVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGYKW 231


>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
           F0402]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 124/228 (54%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ +A  +   L+ E + V     G   +EL +    D ++LD+ L  + G E
Sbjct: 3   KVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+      DKV GL SGADDY++KPF  EEL+AR+RA++RR+  
Sbjct: 63  VLRRIRKTS-SVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEV 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S++    + ++  A  V V      L+  EY +++     KNT L+++  +  ++  
Sbjct: 122 RGTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
               +   +DV++  LR K+    G   YI TV G GYV+R +  DE+
Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKTGE-EYISTVRGVGYVMR-DGNDES 227


>gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
 gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
          Length = 224

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+  L   I   L++E++++     G   ++     E+DA+ILD+ +  + G 
Sbjct: 1   MRILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    + PV +L+   SIED+V GL +GA+DY+ KPF  EEL+ARIR ++R  R
Sbjct: 61  TVLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLRTPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL V LD   V   G +I L+GKE+ ++  +   +   L++E    HL++
Sbjct: 121 DTGGVCCRVDDLEVRLDTHEVSRGGKQITLSGKEFALLRYMIQNEGIVLSREKMEQHLWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +IDV+I  LRKK+ +       I TV G GYVL+
Sbjct: 181 YDYPGGSNVIDVYIRYLRKKV-DEGYETKLIHTVRGTGYVLK 221


>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 244

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A SI   L +E F V V   G   ++    ++ D ++LD+ L    G E
Sbjct: 19  RVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLPGFDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 79  VCRRIQAQRP-VPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRRVER 137

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q+        +  G+L ++   + V +    +HLT  E+ ++  L+ +    LT+E  
Sbjct: 138 AQQAARTPALGSLRFGELEIDHVQRRVRLGSGDVHLTPTEFDLLACLAAQPRAVLTREQL 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR+K+     G ++I TV G GY L   
Sbjct: 198 LAEVWDWTDASGTRTVDSHVKALRRKI-----GASWIRTVHGVGYALEAP 242


>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 227

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 1/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  +  +++    +E + V++   G  G+  CK      ++LDL L  + G EV
Sbjct: 4   ILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLPGLSGREV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + ++     TPV ILS +S + DKV  L++GADDY++KPF+  EL+AR++A +RR+R  
Sbjct: 64  CKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTRRT 123

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            Q   +  G+++V+     V   G  + LT  E++++          + ++  L+ ++  
Sbjct: 124 VQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVWGL 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + +D  I KLR+KL        +  TV G GY     A
Sbjct: 184 NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGYKFVPQA 227


>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 234

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK +NF VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGETQLIHTVRGVGYVLR 230


>gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42]
 gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42]
          Length = 251

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 27  MKILIIEDDLEAAAYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 87  SVISELRRKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 146

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 147 TPEQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 207 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 251


>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 234

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 124/233 (53%), Gaps = 10/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54
           RILL+ED++     +   L+ + ++V   + G   +EL +           D ++LDL L
Sbjct: 3   RILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLML 62

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV R +R +  + PV +L+   S  DK+ GL+ GADDY++KP++  ELVAR+ A
Sbjct: 63  PRLSGTEVCRRIRRSS-NVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121

Query: 115 IVRRSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           ++RR+R    A+ ++  G +S++++   V V G  I +  +E++++EL     +  LT+ 
Sbjct: 122 VLRRTREEEPAEPVLEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRG 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++ ++      + K +DV + ++R K+         + TV G GY L    
Sbjct: 182 QIIDRVWGAGYVGDTKTLDVHVKRIRAKIEREPSDPTLLVTVRGLGYKLVSEG 234


>gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320]
 gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response
           regulator) [Proteus mirabilis HI4320]
 gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F +      +    L        I+LDL L    G  
Sbjct: 6   KVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYISKPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +++  G   +NL  + +  +   + LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPSQDNAIVSFGKFKLNLGTREMFHEDQHMPLTSGEFAVLKVLVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYSAMERSIDVQISRLRRMIEEDPTHPRYIQTVWGLGYVFVPDG 236


>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
 gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   + + +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  +  TPV  L+    + D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  QVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +    ++DV I +LR K+ +       I T  G GYVL ++++D
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFPHKLIHTRRGMGYVL-DDSED 224


>gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
 gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ4037]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    +
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+ LA  ++  L+S  F V V ++G       +  + D +ILD+ L    G  +
Sbjct: 4   VLLAEDDRRLAELVKDYLESHGFQVVVEEVGHTVPRAVQSLDPDIVILDVMLPGKDGLTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R  + + P+ +L+   S  D+V GL+ GADDY+ KP     L+ARIRA++RR +  
Sbjct: 64  CKEIRP-RYNGPILMLTARDSDADQVSGLEYGADDYVIKPAEPRVLLARIRALLRRYQQG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               QS +  GDLS+ + ++ V++ G  I L+  E+ M+   + +    L++E   N +Y
Sbjct: 123 EDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTFAKQPGKVLSREYLFNVIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +   + IDV I +LRKKL + +   N I+TVWGRGY+    A 
Sbjct: 183 GRPYDGMDRTIDVRISQLRKKLGDHSDDPNRIKTVWGRGYLFVAEAW 229


>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 226

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 1/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++ L   +    +     V     G +G++L +  ++D +ILD+ L ++ GF
Sbjct: 1   MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  +R      PV +L+   S+ED+V GL+ GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S++  G L+++  A+   V   ++ L  +E+ ++ELL   +N   +++  +  ++ 
Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    ++DV I  LR KL         + TV G GY 
Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRP-FNLDMMVVTVRGVGYK 219


>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA ++   L    ++V   D GED         +  ++LD+ L  + G 
Sbjct: 1   MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K   PV IL+   +++D+V GL  GADDY++KPF+  E  AR+RA++RR +
Sbjct: 61  AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G L  +L+A  +      + L+ +E  + E+L  R+   +TKE  ++ L+ 
Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             D+     I+V++ + RKKL         I TV G GY+L ++ + E  E
Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNIN---IRTVRGMGYLLEKSGEAERQE 228


>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 250

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +  +I++ L  E F V     GE+ I+L   ++ D +I+D+ +  + G   
Sbjct: 24  ILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDGIRA 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR +  
Sbjct: 84  TMQIRE-NSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYKKL 142

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V GDL ++ + K V V G  I LT  EY ++ LL+       + +    
Sbjct: 143 GNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSIDEIYE 202

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + ++
Sbjct: 203 QIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKH 250


>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  L  ++E  L+ E + V +   G  G       + D IILD+ L    GF V
Sbjct: 4   ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLPGRDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR A I+TPV +L+   S  D V GL+ GADDY++KPF+   L+AR+ A++RR    
Sbjct: 64  CSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRATMA 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    Q     G   ++LD + + +    + L+ +EY+++E L  R N  L+++  
Sbjct: 124 SSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRDQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ ++    E   + +DV + KLR+KL   A    +I T+ GRGY  
Sbjct: 184 MDEVWSYSSEATSRTVDVHVAKLRQKLGETA-IPRHILTIRGRGYKF 229


>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
 gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +E+ L ++ + V+    G D + +    +   +ILD+ +  I G +V
Sbjct: 4   VLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIMMPGIDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    + P+ ++S      DK++GL +GADDYI KPF+  EL+AR++A +RR    
Sbjct: 64  CMKIRKE-YNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   + +I    +++N     V + G  + LT  EY+++ LL+       + E  
Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGAELKLTPTEYKILLLLASNSGKVFSAEDI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++  +       +   I +LR+KL +       +ETVWG GY + 
Sbjct: 183 YKEIWAEKYFEGNNTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230


>gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
 gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 224

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
 gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
           [Spirochaeta coccoides DSM 17374]
          Length = 224

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 115/224 (51%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   + ++L+ E F VY    G + +   +  + D  I+DL + ++ GFE
Sbjct: 3   KILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR      PV +L+       K++G Q+GADDY+ KPF   EL+AR++A+++R + 
Sbjct: 63  LCQELRA-SYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  G L +N     V     +  L  KE++++  L+     T +++  +  ++  
Sbjct: 122 IASQNVQIGKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E   + +DV I +LR++          I T+ G GY L  ++
Sbjct: 182 GFEGNERTLDVHINRLRQRFPEEKTDFR-ITTIRGLGYRLEVDS 224


>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 244

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   I+  L +E + V     G++ + L +  E   +ILD+ + ++ G+ V
Sbjct: 22  ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELDGWSV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + PV +L+  +  +D + G + GADDY++KPF+   L+AR + ++      
Sbjct: 82  CRRIRKTS-NIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 140

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    + + +  + V+  ++TV+V G  I+LT  E++++  L   +   +T+E  +  +
Sbjct: 141 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + ++  I  LR KL + +     I TV   GY    N 
Sbjct: 201 WGYEFSGDDRTVNSHIRNLRTKLGDKS---KCIITVVRAGYKFEGNV 244


>gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Corynebacterium
           variabile DSM 44702]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  LA  +   L++E   V V + GE G+ +    ++DAI+LD+ +  + G+
Sbjct: 1   MRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR     TPV  L+      D+V GL +G DD+++KPF+   LVAR+RA+VRR  
Sbjct: 61  RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++  A+        I LT +E  +++ L       +TK+  L +++ 
Sbjct: 121 RGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G  + +  I++V+I  LR K+ +   G+  I TV G GY L  N 
Sbjct: 181 GSFDGDTNIVEVYIGHLRAKV-DRPFGRAAIGTVRGAGYRLDRNG 224


>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 268

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   + + L+ E + ++    G+  +   +    DA++LD+ L D+ G  
Sbjct: 44  RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGLS 103

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   S+E++V GL +G DDY++KPF  EE+VAR+R ++RRS  
Sbjct: 104 VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 163

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 164 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 223

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         +++++I  LRKK+   AG +  I T  G GY+++ 
Sbjct: 224 WSYDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMIKP 266


>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 235

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +  +I + L+ E     +   GE+ ++L K  E   I++D+ +  + G  
Sbjct: 5   RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R    + P+ +L+  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR   
Sbjct: 65  TTSLIREFS-NVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLM 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +   +  I    L +NL  K   V    + LT  E++++ LL   K    + 
Sbjct: 124 LGAKSSNQQTTDEDTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSI 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++D         + V I K+R+K+        Y++ VWG GY + 
Sbjct: 184 NDIYERVWDEPGYNAENTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ +L++ED+  +   +   LK E F       G   +E+ +    D +ILDL L D+ G
Sbjct: 1   MKTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPDMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V  ++R    S P+ +LS   S  ++++GL  GADDY+ KPF+  E+VAR+RAI+RR+
Sbjct: 61  EQVCVSIRKTN-SIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRRT 119

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S    G L ++   + V   G  I LT  EY+++ +L+       T+   +
Sbjct: 120 DDSQLLADRSSYNHGHLEIDSLKQMVFCHGEPISLTPNEYKLLLMLAKYPQRHFTRNELV 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +     E +V+ ID  +  +R K+        YI TV+G GY  
Sbjct: 180 DKVLGYDFEGDVRTIDQHVKNIRYKIEPDPKNPLYIRTVYGSGYRF 225


>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARE-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
 gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + FNV     G +G+++ + +  DA ILD+ +  + GFE
Sbjct: 14  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR   +  PV  L+   ++E+++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 74  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 133

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL++N +   V   G  + L+  E+ ++  L L     L+K   L++
Sbjct: 134 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 194 VWHYDFGGDGNVVESYISYLRRKV--DTHEPQLIQTVRGVGYVLR 236


>gi|332662422|ref|YP_004445210.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331236|gb|AEE48337.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+ ++ + I+  L  EN+ V V   G  G+++     FD IILD+ L D  G E
Sbjct: 3   KILLVDDEVSVVNFIKKGLADENYEVSVAFDGSTGVKMALEAPFDLIILDIMLPDKNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R   I TP+  L+ + + E+   GL  GADDY+ KPF   EL ARI+A++RR   
Sbjct: 63  VCKEIRFGNIQTPILFLTALGASENVALGLDMGADDYLVKPFKFIELNARIKALIRRGKS 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     ++    DL V+ DAKTVE     I LT  EY+++ +L   K   L++   L 
Sbjct: 123 NDSHQQPHTIYTIADLKVDDDAKTVERNASFISLTATEYRLLLVLIKNKGRVLSRVDLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +D     E  ++DV+I  LRKK+   A  K  I TV G GYVL+E
Sbjct: 183 SAWDINFNMETNVVDVYINYLRKKMDTDANNK-LIHTVVGMGYVLKE 228


>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
           GGS_124]
 gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
 gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|257057064|ref|YP_003134896.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256586936|gb|ACU98069.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +  + D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFDTAVVSDGSRALPALRELKPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCKAIRAESG-VPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARLRRTES 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAETLTIGDLTIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 221


>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
 gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
          Length = 234

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F V+  + G + + + +    DA I+D+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAN 127

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  + I   DL++N D   V   G  + L+  E+ ++  L   K   L+K   L++
Sbjct: 128 VDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTQLIHTVRGVGYVLR 230


>gi|207738979|ref|YP_002257372.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|300697058|ref|YP_003747719.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
 gi|206592350|emb|CAQ59256.1| response regulator protein for cobalt zinc cadmium resistance
           [Ralstonia solanacearum IPO1609]
 gi|299073782|emb|CBJ53303.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum CFBP2957]
          Length = 224

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+R I+RR  
Sbjct: 61  QVIRELRRRK-ATPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DLS++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 120 MRESEILDIADLSIDTIKRRVTRAGQRIDLTAKEYALLHLLARRAGEVLSRSLISSQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 180 VNFDSNTNVVDVAIRRLRAKV-DDPFEHKLIHTLRGMGYVLDTVAR 224


>gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 242

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E 
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEAREE 240

Query: 233 L 233
            
Sbjct: 241 A 241


>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   +   L+S+++ V+  + G    E+ +      IILDL L DI
Sbjct: 1   MKQKNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLMLPDI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E+ + +R      P+ +L+      + + GL+ GADDYI+KPF  +EL+AR++A++R
Sbjct: 61  TGEEICKKIRKTS-RVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLR 119

Query: 118 RSRGH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R+         +      +L ++     V      ++LT  E+ ++  L        T+E
Sbjct: 120 RTSEELVPLFNKISFDNDNLIIDFGKDLVLKNQSPVNLTPTEFNILSALIKYPGKVFTRE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +        E   + +D  I  LR+K+ +      Y+ T+ G+GY  
Sbjct: 180 ELIEFALGSEFEGFDRAVDSHIKNLRQKIEDNPRTPKYVLTIHGKGYKF 228


>gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv
           [Clostridium sticklandii DSM 519]
 gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV
           [Clostridium sticklandii]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 132/229 (57%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  ++L L+ E + V ++  G +G++      FD +ILD+ L  + G E
Sbjct: 5   KILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDYFDLLILDVMLPSLNGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR  K   PV +L+    + DK+ GL  GADDY++KPF  EEL+ARIR I +R   
Sbjct: 65  VLRRLRQ-KSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMDN 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+    S++    +++++D  TV  +   I LT +E+++++ +   KN  +T+EM L
Sbjct: 124 YKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      +  ++DV+I  LR K+ +  G K  I T+ G GY +++ 
Sbjct: 184 AKVWGYEYMGDTNVVDVYIRYLRSKIDDQFGIK-LIHTIRGVGYQIKDE 231


>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++EN      + G++G++  +  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|258516238|ref|YP_003192460.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779943|gb|ACV63837.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 232

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           ++I++ +D++ +   +++ L+ E + V     GED ++   +   +D ++LDL + +  G
Sbjct: 4   IKIMVADDEERIRRLVKMYLEKEGYEVGQAINGEDVLKQLGQDASWDLLLLDLMMPETDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V R LR  K   P+ +L+      D+V GL+ GADDY+ KPF+  ELVARI+A++RR 
Sbjct: 64  WQVCRELR-KKSDIPIIMLTARGDEIDRVLGLELGADDYVLKPFSPRELVARIKALLRRV 122

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R       +  +    L+++  ++ V + G  + LT KE+ ++  +S       ++E  L
Sbjct: 123 RRKQVYGDEVQLQFSGLTIDPASRKVILMGQVLSLTPKEFDLLLFMSQSAGQVFSREQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++++     + + +D  I +LR KL+       YI TVWG GY   
Sbjct: 183 RNIWNYDYFGDPRTVDTHINRLRDKLTKIKDAPQYIHTVWGVGYKFE 229


>gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   LK+  F       G+D  +     + D I+LD+ L    G  +
Sbjct: 2   IYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIMLPGSDGLAI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  L     +   PV + +   +  DKV+GL  GADDY+ KPF   E+++RI+A++RRS 
Sbjct: 62  LEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLRRSE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +GH   ++  G+LS+++    V+     IHLT KE++++ LL    N   T++  L  ++
Sbjct: 122 KGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLKQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I  LR KL +A    +YI+T+ G GY L ++
Sbjct: 182 GDDFLGETRTVDVHIGTLRTKLGDAG---HYIQTIRGVGYRLEDD 223


>gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 236

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R      P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIRRESG-VPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|303257073|ref|ZP_07343087.1| transcriptional regulatory protein OmpR [Burkholderiales bacterium
           1_1_47]
 gi|302860564|gb|EFL83641.1| transcriptional regulatory protein OmpR [Burkholderiales bacterium
           1_1_47]
          Length = 237

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 8/235 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  L   +   L +  F+V V +  E    L     FDA++LD+ +    G  +L+
Sbjct: 1   MVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGISILK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--- 121
            +R +  +TP+ +L+      D++ GL+ GADDY+ KP+N  EL+AR+ AI+RR      
Sbjct: 61  RIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRREPVDP 120

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G+ S++L  + +      I LT  E+ +++  +      L+++  + 
Sbjct: 121 PGAPSKEDEVVRFGNFSLDLGTRKLSKGDEEIPLTTGEFAVLKTFARHPRVPLSRDKLME 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                  E   + +DV + +LRK +        Y++TVWG GYV   +   +  +
Sbjct: 181 MARGREYEAFDRSLDVQVSRLRKIIEPDPSKPRYLQTVWGLGYVFIPDGASDAQD 235


>gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
 gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp.
           B510]
          Length = 253

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD+ +   +   L    + V     G + +        D I+LDL L    G  
Sbjct: 6   HLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPGEDGLS 65

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR       TPV +L+ M    D++ GL+ GADDY++KPF+  EL+ARI+A++RR 
Sbjct: 66  LCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKAVLRRV 125

Query: 120 RGH--------AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                      A +++     S++L  + +    G  + L+  EY ++   +      LT
Sbjct: 126 AAPLVAGGPTAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFAEHPQRVLT 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++  L+        P  + IDV + +LR+K+         I+TV G GY+   + 
Sbjct: 186 RDQLLDLARGRSAVPFDRSIDVQVSRLRRKIEPDPADPTLIKTVRGGGYLFTPSV 240


>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 3/220 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED++ + + +E+ L+ E ++V     GE+  E    Y   A+ILDL L  + G EV R
Sbjct: 9   VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68

Query: 65  ALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
            +R  K +   + +L+   S E K+ GL+ GADDY+ KPF+ EEL+AR+ A++RRS    
Sbjct: 69  WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQFC 128

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           Q  I    L +      V + G  ++LT  E+ ++       N  L++E  +  ++   D
Sbjct: 129 Q-KISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPHTD 187

Query: 184 -EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   + ID  I KLR+K+ +       I+TV G GY   
Sbjct: 188 VDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRFV 227


>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
           [Mahella australiensis 50-1 BON]
 gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
           [Mahella australiensis 50-1 BON]
          Length = 223

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I      E   +   + G   IELC+ + FD IILD+ + ++ GF  
Sbjct: 4   ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPELDGFST 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R     TPV +LS      D++ G + G DDY+ KPF+ +EL+ R+ AI++R+R  
Sbjct: 64  CHEIRKI-CDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRKA 122

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  +   LS+N  A TVE+ G RI L+ +E  ++  +   KN  L+++  +  ++ 
Sbjct: 123 ETESDAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +D  +  LRKKL   +     I TV G GY   
Sbjct: 183 YDFYGDDRTLDTHVKLLRKKLKEYS---RLIVTVRGVGYRFE 221


>gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445]
 gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family
           [Brucella suis ATCC 23445]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 128/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRILIIEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTELYDAVVLDIGLPQMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVVERWRRSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S  V G L ++       + G  + LT  EY+++  +    +  +++   + HLYD
Sbjct: 121 GHASSEFVCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VF+ +LRKK+         IETV GRGY +R   + E 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGRGYRMRSGGEGEA 224


>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 239

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+ + F V     G   ++  + +   A+I+D+ +  I GF 
Sbjct: 13  RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   I  PV  L+    ++DKV GL  GADDYI+KPF+ EE+VAR+R ++RR+  
Sbjct: 73  LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRRAGH 132

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A     S I   D+ ++ D   V   G  + L+  E+ ++    +   T L+K   L+H
Sbjct: 133 GAPVRESSRIRFEDIELDDDTHEVWKAGVPVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      EV +++ ++  LRKK+    G +  I T+ G GYV+R   +
Sbjct: 193 VWRYDFGGEVGVVETYVSYLRKKV--DTGERRLIHTLRGVGYVMRAPGR 239


>gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia AU 1054]
 gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator
           [Burkholderia cenocepacia HI2424]
 gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia AU 1054]
 gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia cenocepacia HI2424]
          Length = 223

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V VT+ G+DG+ L    +FD I+LD+ L  + GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPALDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein
           [Corynebacterium pseudotuberculosis FRC41]
 gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E FN      G   +E     E D ++LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  +   D V GL++GADDYI+KPF  +EL+AR+RA +RR+  
Sbjct: 64  ICRLIRQ-NSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I   DL++++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 123 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221


>gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F+V     G D ++L + +E D +ILD+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFHVIKAYDGYDALKLLEDHEVDLMILDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRETS-SIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A  +   G L++N D K V V+G  I LT  EY ++ LL        + +   
Sbjct: 123 GNMNQQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231


>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 235

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +  +I + L+ E     +   GE+ ++L K  E   I++D+ +  + G  
Sbjct: 5   RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R    + P+ +L+  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR   
Sbjct: 65  TTSLIREFS-NVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLM 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +   +  I    L +NL  K   V    + LT  E++++ LL   K    + 
Sbjct: 124 LGAKSSNQQTTDEGTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSI 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++D         + V I K+R+K+        Y++ VWG GY + 
Sbjct: 184 NDIYERVWDEPGYNAENTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234


>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
 gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G++     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 237

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+      I+  LKS  + V     GE+ +   +    + IILDL + ++ G E
Sbjct: 14  KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           V + LR        P+ +L+  ++  D+V GL+ GADDY++KPF+  ELV R++ ++R  
Sbjct: 74  VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRSG 133

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++ G     I+  +LS+N+      V+G  + LT  E++++ +L+ R+    ++E  L  
Sbjct: 134 QTTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++  +  + + +D  + +LR+KL  AA    Y++TV G GY   + 
Sbjct: 194 VWEYDNLIDTRTVDTHMRRLREKLGAAA---RYLDTVRGVGYRFVDE 237


>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
 gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L  E + V     GE+ ++L   ++ D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVMMPRLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K + P+ ILS  S   DK+ GL  GADDY++KPFN  EL AR+++ +RR    
Sbjct: 64  TLKIRE-KQNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q++   G L ++ D K + V G  + LT  EY ++ LL   +    + +   
Sbjct: 123 GSTVEKENQAVYTVGGLMIDDDQKEITVDGEPVKLTPIEYNILLLLVKNQGKVFSIDQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 ESIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
 gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   + + LK + F V   + G + +++ + +  DA ILD+ +  + GF
Sbjct: 14  IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + +PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 74  ELLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 133

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   DL++N +   V   G  I L+  E+ ++  L L     L+K   L++
Sbjct: 134 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 194 VWHYDFGGDGNVVESYISYLRRKV--DTQEPQLIQTVRGVGYVLR 236


>gi|84387151|ref|ZP_00990173.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
 gi|84378012|gb|EAP94873.1| probable two-component system response regulator (Pho family)
           [Vibrio splendidus 12B01]
          Length = 224

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++L   T++     I +  +E+ +++LL   +   ++K   L H+
Sbjct: 121 QPTPQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFSKP-LIHTLRGVGYVLK 223


>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V        L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNHQAGAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
 gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 7   KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 67  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 186 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 225


>gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous]
          Length = 251

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R +++ED+ ALA+ I   L+ + F   +T  G + I L +  + D ++LDLGL  + G E
Sbjct: 25  RAMVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGLPSLDGVE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+  +   D + GL  GADDY++KPF   EL+ARI+A++RR R 
Sbjct: 85  VCRQLRTFSDAY-VVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPRT 143

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++ +   GDLS++++ + V V G  + LT  E+ ++  LS      +T+   +  
Sbjct: 144 TDTARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIGA 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  ++DV I  LR+KL + A    Y+ TV G GY +
Sbjct: 204 VWGPNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGYRM 247


>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
 gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
           10987]
          Length = 221

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++ + V V   G +G+       FD ++LD+ + ++
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 61  NGFEVAKMIRSQS-NIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  + 
Sbjct: 120 RSYDNNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKVDE 221


>gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 237

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD  L   ++  L+ E F++     G+  IELC+    D I+LD+ L D  G +
Sbjct: 8   KILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLD 67

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R      + PV  L+  +S  D++ GL+ GA+DY+ KPF   EL+ARI+ +  R+
Sbjct: 68  ICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIK-LQFRN 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L+  G + ++  +  V + G  + LT  E++++E L  R     ++E  LN ++
Sbjct: 127 QATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   + +DV++ +LR+K+         I +V G GY    
Sbjct: 187 GQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230


>gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
 gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Dickeya dadantii 3937]
          Length = 273

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA  +   L++  ++ +    GE+     + +    I+LDL L    G  +
Sbjct: 46  VLIVEDEPKLAQLLVDYLQASGYHTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 105

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R    + P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ ++RR R  
Sbjct: 106 CRAIRGFS-NVPIIMVTARTDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 164

Query: 123 AQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + L       L ++ +       G  + LT  E+++++ LS       ++E  L+HLYD
Sbjct: 165 HEPLPGDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                  + ID  I  LR+KL       ++I TV+G GY        E
Sbjct: 225 DYRVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWEAAVSQE 272


>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
           protein [Psychromonas ingrahamii 37]
 gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
           [Psychromonas ingrahamii 37]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L  +++  L + ++ V     GE+G+     Y +DA I+DLGL  I G 
Sbjct: 1   MRILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    + P+ IL+   S +DKV GL +GADDY+ KPF  EELVAR+ A++RRS 
Sbjct: 61  TVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V+ +   I L+  EY++ E   L      +K +   H+YD
Sbjct: 121 GKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +I+VFI +LRKKL         IET+ G+GY L  
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NEYGLIETLRGQGYRLTP 222


>gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
 gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR   +V+R +
Sbjct: 61  KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQ 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S     DL +++ +  V      ++L  KE+ +++ L     + +++      +
Sbjct: 121 SSVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGEPSLIHTVRGAGYVLR 223


>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
 gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding [Nitrosomonas
           europaea ATCC 19718]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+   I   L++  +    T+  E    +      D ++LD  L    G E+
Sbjct: 5   VLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSGIEL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R+LR    +   PV +L+      DKV GL++GADDY++KPF+  EL+ARI+A++RRS 
Sbjct: 65  ARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRSL 124

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEV-------QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             A   I   G + +N     V V           + L+  EY+++  L        T+ 
Sbjct: 125 PEASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSPTEYRLLYFLMAHAERVHTRA 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L+ ++      E + +DV I +LRK L + AG  + ++TV G GY      + E
Sbjct: 185 QLLDRVWGDHVFVEDRTVDVHIRRLRKAL-DVAGKADLVQTVRGAGYRFSTRGESE 239


>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
           MMB-1]
 gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+  +   I + L+   +     +  + G E+   +  D I++D  +    G E
Sbjct: 5   KVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMPGGSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+    +   PV +L+  S  ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  LTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I    L ++  ++ V +    + +   EY++++ L   +    ++   L+ +
Sbjct: 125 TPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAYSRAQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + +DV I +LRK + N     + I+TV G GY  
Sbjct: 185 WGGNVYVEERTVDVHIRRLRKAIGNT--HDSLIQTVRGTGYRF 225


>gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
 gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV +LS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           D   +P+  +IDV I +LR K+         + TV G GY+L+     ++ 
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDVP-LLHTVRGAGYMLKAGKSKQST 230


>gi|300768408|ref|ZP_07078309.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494023|gb|EFK29190.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 242

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 124/242 (51%), Gaps = 17/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M++L+IED+K+++  + +  K E ++ +    G + +E+       +D + LDL L    
Sbjct: 1   MKLLMIEDNKSVSEMMAMFFKKEKWDAHFAYDGNEAVEMFNEDVDGWDMVTLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R A  + P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVSADIRKASPTVPIIMLTARDSESDQVLGLEMGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SRGHAQS------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRK 165
           +     +             + T    +N   +   +   +I  LT KE+ +++ L+ + 
Sbjct: 121 ADLAKTTLADQPASTVSSFDVQTDHFKLNTKTREAYLADKQIRDLTPKEFDLLKTLAQKP 180

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               ++E  L  ++D     + + +D  I KLR+K+  A  G   I+TVWG GY   ++ 
Sbjct: 181 RQVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKA--GPQIIQTVWGVGYKFDDSG 238

Query: 226 KD 227
            D
Sbjct: 239 VD 240


>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 248

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K Y+ D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKDS-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 249

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+   + + L+   ++V   + G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFT 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  VCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G L++  +          + LT  E++++  L  R   T+     
Sbjct: 124 DRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   A+ E  ++ +
Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHAD 243

Query: 235 T 235
            
Sbjct: 244 Q 244


>gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 232

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDDK +   +++ L+S+ + VY    G +G+E+ +  E    I+D+ +  + G  
Sbjct: 5   HILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEEIHLAIVDVMMPRMDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTMKLRE-KYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +++ V G L +N D   V V G+ + +T  EY+++ LL+       + E   
Sbjct: 124 FMEKLEPKENVHVIGGLEINEDRVEVLVDGNPVKMTPIEYKILLLLAKNPGRVFSAEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++          I V +  +R+K+        Y++ VWG GY + + +
Sbjct: 184 ERVWQ-EKAISTDTIMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEKQS 232


>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
 gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Synechococcus sp. WH 8109]
          Length = 262

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE  +E+      D ++LD+ L  + GF V
Sbjct: 22  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 82  CRRLRAESC-VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 140

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 141 NAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 200

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 201 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250


>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
           [Dickeya dadantii Ech703]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+   +     +  +  +        + ++LD  L    G +
Sbjct: 4   RILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWMLPGGSGLQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  + + + +   E++++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMRGLSLDPSSHRVTTEEYALDMGPTEFKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALET-TGHDKMVQTVRGTGYRF 225


>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 255

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D I+LD+ L  + GF V
Sbjct: 15  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 75  CRRLRAESC-VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243


>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
 gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
          Length = 221

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ +LA  +   L    +  ++   G + I+  + Y  D I+LDL L +  G ++
Sbjct: 2   ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILLDLMLPNRDGLDI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ + +      D++ GL+ GADDY+ KP++  ELVAR++ ++RR + H
Sbjct: 62  YRELRSFS-DIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRFQ-H 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S      L V+ D     V    + LT  E+Q++   +       +++  +N +Y   
Sbjct: 120 TPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIYSDG 179

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LRKK+       ++I++V+G GY   
Sbjct: 180 RVVTDRTIDSHIKNLRKKVQAVNDQYDWIKSVYGVGYRFE 219


>gi|309790007|ref|ZP_07684582.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227950|gb|EFO81603.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D + +   +    +   F       G   ++L +    D IILD  + ++ G E
Sbjct: 4   RILIVDDVREIVQGLAAYFRQAGFETLAAYDGRSALDLARRERPDLIILDWMMPELDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ +L+      D + GL+ GADDYI+KPF   E+VAR RAI+RR+ G
Sbjct: 64  VCRQLRRES-SVPIIMLTARVEETDTLIGLELGADDYIAKPFRAREVVARARAILRRASG 122

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S++  G +S++LD  T EV GH + LT  E+ ++  L       L++   L+   
Sbjct: 123 ALAPPSMVRGGGVSLDLDRHTTEVAGHTVELTPTEFALLLALMRNPGRPLSRAQLLDAAQ 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E   + ID  I  LR+K+         I TV+G GY   +
Sbjct: 183 GDAFEGYERTIDAHIKNLRRKIEADPANPRRILTVFGVGYKFVD 226


>gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
          Length = 240

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G  V
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPIVKPDLILLDVMLPGLDGTGV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARI A  R ++  
Sbjct: 64  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 183 ISRSSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240


>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
 gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 233

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I   +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 6   KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    S P+ +L+  +    KVRGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 66  TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + G     +    L+++LD+++V  Q     L  KE+ ++   +  +   LTK+    
Sbjct: 125 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKK+   +G   YI+TV G GY   +  
Sbjct: 185 EVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNKEV 233


>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
 gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
          Length = 236

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + FNV     G +G+++ + +  DA ILD+ +  + GFE
Sbjct: 10  KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR   +  PV  L+   ++E+++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL++N +   V   G  + L+  E+ ++  L L     L+K   L++
Sbjct: 130 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKV--DTHEPQLIQTVRGVGYVLR 232


>gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/231 (38%), Positives = 138/231 (59%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +++  L   N+N+ V D GE G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRVLLVEDDIELQTNLKQHLVDANYNIDVADDGEIGLFQGTEYRYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  +I  P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  ALIKTLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G  S+N  +  ++     I L+G EY++ E   L     ++K +   H+YD
Sbjct: 121 GKASPVVNNGPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  +I+VFI +LRKKL       + IET+ G+GY L +  K E  +
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NSFSLIETLRGQGYRLTQMQKTEQSD 230


>gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 230

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+  +  +    + +         G  G       ++D +I+D  L  + G 
Sbjct: 4   MRILIIEDDREASDYLVKAFREQGHVADHAADGLSGYASASEGDYDVLIVDRMLPKMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ +LR  K+ TP  ILS +  ++D+V+GL++G DDY+ KP++  EL+AR+ A+ RR  
Sbjct: 64  SLISSLREQKVETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALARRRV 123

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    ++    GDL ++  +  V V G  I L  +E++++E L       +T+ M L ++
Sbjct: 124 GPRGEETHYRVGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   +P+  +IDV I +LR K+         + T+ G GY++RE  +
Sbjct: 184 WDYHFDPQTNVIDVHISRLRAKIDKGRENP-LLHTIRGAGYMIREGTR 230


>gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661]
 gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661]
          Length = 229

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 135/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL +ED++  +  +   L    F V V+  G +G+     +++DA+ILD+ L  + G+
Sbjct: 1   MRILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGIRASK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L A+ V   G+R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +A      + TV G GYVL   ++ + 
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFDVKLLHTVRGMGYVLEVRSQPQP 229


>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 135/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V+V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 225

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A ++   L++E F   +   G D +E  +    D ++LDL L  + G E
Sbjct: 5   RILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  +   PV +L+      D++ GL  GADDY++KPF+   LVAR+RA++RR   
Sbjct: 65  VCRRLQAERP-VPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R     ++  G L V+  A+ V ++G ++HLT  E++++  L+    T  ++   L  +
Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +        + +D  +  LR+KL +       I T  G GY L   
Sbjct: 184 WGWTAGAGTRTVDSHVRALRRKLGD-----EIIRTAHGVGYALEPP 224


>gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 242

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVIHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 223

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   L    +       GE G+       FD +I+D  +    G 
Sbjct: 1   MRILIIEDDLEAAAAMSHGLTEAGYQCVHAPDGEAGLTAAGKGGFDVMIVDRMMPKKNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
           EV+  LR    +TPV  LS +  + D+V GL++GADDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  EVVETLRREGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +P+  +IDV I +LR K+ +    +  ++TV G GY L  
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223


>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK +   +E  L      V     G       +   +D ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  ELVAR RA+VRRS+
Sbjct: 61  ELLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  GDLSV+    T      RI LT +E  ++  L   +   L++    + LY 
Sbjct: 121 GRSTDTIEYGDLSVDPALMTATRGAERIALTSRECALLVELLSNQGRPLSRAQLQDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   I+V +  LRKKL         I T+ G GYV+ +
Sbjct: 181 WNEEIESNAIEVHVSNLRKKLGAD-----LIRTIRGVGYVVEK 218


>gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH
           DNA-binding domain) [Clostridium ljungdahlii DSM 13528]
          Length = 226

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  ++  I+  L+ E + VY    G +GI L    EF  +ILDL L DI G EV
Sbjct: 4   ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLMLPDIDGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    +  + +L+   ++ DK++GL  GAD+Y++KP +  EL AR+ A+ RR    
Sbjct: 64  CSTIRRIS-NVHIFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSSA 122

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  I++ D  L +N D + V+++G  I +T  E+ ++ +L+  +   L+++  +  ++ 
Sbjct: 123 EEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVFG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 IDFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGYKF 223


>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I   +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 4   KILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R    S P+ +L+  +    KVRGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 64  TMEKIRQTS-SVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + G     +    L+++LD+++V  Q     L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKK+   +G   YI+TV G GY   +  
Sbjct: 183 EVWGEAYVYDDSNIMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNKEV 231


>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 233

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   +++ L++E + + +   G + +E     + D ++LD+ + ++ G E 
Sbjct: 6   ILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDGIEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +LS      DK+ GL  GADDY++KPF+  ELVARI++ +RR R +
Sbjct: 66  CMKIRET-EHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRKY 124

Query: 123 AQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S       +V  +LS+N     V + G  + LT +E+ ++ELL+  +   L+ E    
Sbjct: 125 THSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V + K+R+K+        Y++TVWG GY + +
Sbjct: 185 KVWKEQYLESNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGYKMEK 231


>gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
 gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
          Length = 241

 Score =  262 bits (672), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V      E    L +   F  ++LDL L    G  
Sbjct: 9   KILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 69  ICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRSK 128

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ I  G  ++NL  + +      I LT  E+ +++ L       L+++  
Sbjct: 129 DVPGAPTAEENQITFGQFTLNLATREMAKGDEVISLTSGEFAVLKALVTHPREPLSRDKL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 189 MNLARGRDYSALERSIDVQVSRLRRMVEVDPATPRYIQTVWGLGYVFVPDG 239


>gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 224

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
          Length = 240

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIPG 59
           +ILLIEDD  LA  I   L    + V+    G+ G+++    E D   I+LDL L D+ G
Sbjct: 4   QILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDG 63

Query: 60  FEVLRALRVAKIS----TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            EV + +R +K +     P+ +L+      D+V GL+ GADDYI+KPF   EL+ARIRA+
Sbjct: 64  MEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAV 123

Query: 116 VRRSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +RR     Q+      +  G L+V  D+  V +    + LT  ++Q++   +      L 
Sbjct: 124 LRRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLN 183

Query: 171 KEMFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E     + +        + IDV I +LR  + +       I TV G GY  
Sbjct: 184 REQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235


>gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. TJI49]
          Length = 221

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 123/219 (56%), Gaps = 2/219 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+      ++  L+   F+V +   G +G+ L +   +D I+LD+ L  + G+ VL+
Sbjct: 1   IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVMLPVLDGWGVLK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR    +TPV  L+    ++D+V GL+ GADDY+ KPF   EL+ARIR + RR      
Sbjct: 61  RLRDTH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRET 119

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
             +V GDL +++  + V+    RI LT +E+ +++LL+ R    L++    ++++D   +
Sbjct: 120 ERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDMNFD 179

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +  +++V I +LR K+ + A     I TV G GYVL  
Sbjct: 180 SDTNVVEVAIRRLRAKV-DDAFPVKLIHTVRGVGYVLEP 217


>gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEHKLLHTIRGMGYVLE 220


>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++E+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQAGTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|238927184|ref|ZP_04658944.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304437129|ref|ZP_07397091.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|238884966|gb|EEQ48604.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|304369888|gb|EFM23551.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A+A      L+++ F V ++  G+ G  L    ++D ++LD+ L    GF 
Sbjct: 3   KILLVEDDAAIAELERDYLEADGFAVDISADGDAGKRLAMTGDYDLLLLDVMLPGADGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R A    P+ ++S      DK+R L  GADDYI KPF+  EL AR++A + R   
Sbjct: 63  ICRDVRKA-YDIPILMVSARLEDVDKIRALGLGADDYIIKPFSPSELAARVKAHLARYER 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +++  G L +    + V + G+ + L  +E+ ++  L+       +KE   +
Sbjct: 122 LKGSAGDAAVLRFGALEIQPQTRRVFLGGNEVILAAREFDLLLFLAQHPQVVFSKETLYD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I +LR+K+        +++TVWG GY   +
Sbjct: 182 RVWELDAMGSTATVSVHINRLREKMERDPAHPQWLQTVWGAGYRFND 228


>gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
           T7901]
          Length = 238

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 2/225 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD +LA  I   L    + V V + G+  +EL +    D ++LD+ L +  GF+V
Sbjct: 15  ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEKDGFQV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R  R    S P+ +++  S   D++ GL+ GA+DY++KP     L+ARI+A++RR+   
Sbjct: 75  CREARAF-YSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEMD 133

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A    ++ GDL ++  +K+V++Q + I  +  E++++ LL+      ++++  ++ L   
Sbjct: 134 AAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRGI 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +   + +DV +C++RKKLS+       I+T+ G+GY+   +A 
Sbjct: 194 EYDGFDRSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLFAGDAW 238


>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
           [Pseudomonas fluorescens SBW25]
 gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
 gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens SBW25]
 gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens WH6]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    G++ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARQ-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGYKIEK 230


>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 250

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 128/235 (54%), Gaps = 11/235 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           +RILL++D+  L   + L L  E + V V   G  G+   +   E D I+LD  L D  G
Sbjct: 12  IRILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSG 71

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V+ L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 72  VDICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRA 131

Query: 120 RGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           +G            + +  G L++N + + V   G +I L+ KEY+++  L       L 
Sbjct: 132 QGFTGSAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLE 191

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +  ++      +  ++DV+I  LR+K+ N     + I TV G G++LR+ +
Sbjct: 192 RSEIMKGVWGEDFYGDDNLLDVYIRYLRQKVENK-DLPSLIHTVRGVGFILRDES 245


>gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +    +  + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEQKLLHTIRGMGYVLE 220


>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+ + +     +  +  +E       + I++D  L    G  
Sbjct: 4   RILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGIN 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+  +++   PV +L+     EDKVRGL+ GADDYI+KPF+ +EL+AR++A++RR 
Sbjct: 64  LIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRV 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A   +I    L ++  +  V      + +   E++M+      +    ++E  LN++
Sbjct: 124 SPTALDDVIDVQGLKLDPVSHRVTSGDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  A G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-AGGHDKLVQTVRGAGYRF 225


>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 12/231 (5%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57
           MR +L+++DDK ++  I + L++E + V     GE+ +      E   D +ILD+ +  +
Sbjct: 1   MRSVLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +  R +R    S P+ +LS  S   DK+ GL +GADDY+ KPFN  EL  R++ ++R
Sbjct: 61  NGIDTCRRIRETS-SIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLR 119

Query: 118 RSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RS  +           I    L +N     V   G  + LT +E++++ LL+ +     +
Sbjct: 120 RSTQYNTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFS 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++  +       + V I  LR KL    G K  I+TVWG GY +
Sbjct: 180 AEDIFQQVWKEKYYVSNNTVMVHISNLRDKLEKELGYK-LIQTVWGVGYKI 229


>gi|189183277|ref|YP_001937062.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180048|dbj|BAG39828.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str.
           Ikeda]
          Length = 245

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 133/229 (58%), Positives = 174/229 (75%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIEL L +E        LG+DGIE+ K Y++  IILDL L DI G+
Sbjct: 1   MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL +LR  KI TPV ILSG+S+I++K++GL  GADDYI+KPF+ +EL AR++AI+RRS+
Sbjct: 61  EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH------RIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH++++I  G LS+NLD ++V +          IHLT KEY+++ELL+++K T LTKEMF
Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNMPIHLTNKEYKILELLAIKKGTVLTKEMF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+HLY G DEPE+KIIDVFICKLR+KL  A+ G N+IETVWGRGY+  E
Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229


>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 231

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 5   ILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R + I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 65  CRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 124

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +Q        +V G + V+     V V    +HLT  E+ ++ LL+       + E    
Sbjct: 125 SQAEPVSRDKVVIGPIVVDRGLHVVTVSEKELHLTTSEFDILFLLASEPGRVFSSEYIFE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL +A GG++ I+T+WG GY + 
Sbjct: 185 KIWQEKALGASKTVMVHISNLRDKLRDAMGGESVIKTIWGVGYKIE 230


>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
 gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
 gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
 gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
 gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           C3719]
 gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
 gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas aeruginosa PA7]
 gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           LESB58]
 gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   +     +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  +  +  P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L         ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225


>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +   +  + D  ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V V    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222


>gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 246

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 7   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 67  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIKNKNNVVTRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E 
Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEAREE 244

Query: 233 L 233
            
Sbjct: 245 A 245


>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 113/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +   ++ +L+   FN+   +  +   E       D I+LD  L    G ++
Sbjct: 5   VLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGSGVQL 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++L+  +     PV +L+     EDK+RGL +GADDY++KPF+ +EL+ARI+A++RR  
Sbjct: 65  AKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVMRRVT 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  I    L +   +  V      + +   E++++           ++E+ L++++
Sbjct: 125 PTSNEEPIEFNGLKLEPVSHRVMANEDPLDMGPTEFKLLHFFMTHPERVYSRELLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK +S   G    I+TV G GY  
Sbjct: 185 GTNVYVEDRTVDVHIRRLRKAISRH-GHDAMIQTVRGAGYRF 225


>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+   + + + V     G + IE C   + D I+LD+ + +I GF+
Sbjct: 4   KILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K+S P+  LS   S  DK++GL  G DDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCQKIR-DKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +S I+ G L+++L+++ V  +   I  T KE+ ++ELL+L      +KE     +
Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E +   +   I K+R K    +   N+I TVWG GY   
Sbjct: 182 WGYDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225


>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 234

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 14  ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ IL+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 74  CFELR-KYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 133 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231


>gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 220

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  I LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220


>gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +ILL+ED++ LA S++  L+ E+  V     G++ ++L   +E   + IILD  L  + G
Sbjct: 4   KILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F VLR +R      PV +L+    I DKV GL  GADDY++KPF  EEL+ARI   +R S
Sbjct: 64  FSVLRRIR-KHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHS 122

Query: 120 RG--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   H   +   GDL+V+   K V      I LT +EY+++ +L + ++   +++  L+ 
Sbjct: 123 QKTDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    E +  I+DV++  LR K+      +  I TV G GY+L +N +D
Sbjct: 183 VWGVDFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQNVQD 232


>gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+  ++E +       G+D I       +   +ILDL + ++ G
Sbjct: 1   MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVIRQVRKDS-SIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A GG+  IETVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227


>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
 gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter litoralis Och 149]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V   + GE+ + L      D I+LD  + ++ G EV
Sbjct: 9   VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 68

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR R
Sbjct: 69  CRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRVR 128

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   D+ ++  +  V      + L   E++++     +     ++E  L+ ++
Sbjct: 129 PAATGERLEFEDIVLDASSHRVSRGKSELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 189 GRDIYVDTRTVDVHIGRLRKALTQ-FGGSDPLRTVRGAGYAL 229


>gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 235

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD +L+  + ++L+ E F+  +   G+  +     Y+ D ++LDL L  + G E
Sbjct: 14  KVLVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKPDVVLLDLMLPGMDGIE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      D V GL+SGADDY+ KPF  +EL+ARIRA VRR   
Sbjct: 74  VCKQIRKESG-VPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELIARIRARVRRHGE 132

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V   G +I LT  E+ ++E L+ + +   ++E+ L  ++  
Sbjct: 133 SLPEILEIGDLTIDVAGHQVTRGGEQIQLTPLEFDLLECLARKPHQVFSREVLLEQVWGY 192

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 193 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 231


>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
 gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 307]
          Length = 227

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+IED+ A    +   LK+E + V V   GE G+ + +    D I+LD  L  + G E
Sbjct: 5   HVLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHVSGIE 64

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R    + P+ +LS  S   DKVRGL++GADDY+ KP+   EL+AR+R  +RR 
Sbjct: 65  VCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++   D++++ D   V      + L   E++++     +    L++E  L+ +
Sbjct: 125 RPSKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 185 WGRDVYVDTRTVDVHVGRLRKVLTQH-GGDDPVRTVRGAGYAL 226


>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ LA  I   L+ E     +   G  G+E  +    D I+LDL L  + G E+
Sbjct: 4   ILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLMLPGMAGTEI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + L+    +   PV +L+      D+V G + GADDYI KPF+  EL+ R++A++RR+ 
Sbjct: 64  CKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLRRTL 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +   G +S++ +   V V    I LT  EY+++  L+ R     ++++ L ++
Sbjct: 124 PEQPRKKVFSVGPVSIDTERHLVTVADKEILLTTIEYKLLLDLAERAGRVQSRDILLQNV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +D  + +LR KL +A    + I+TV G GY + E 
Sbjct: 184 WGYNYVGDSRTVDTHVTRLRTKLGSAG---DMIKTVRGFGYKIEEE 226


>gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   +  +L +E + VY    G++ +E+ +  + D  ILD+ L DI GF+
Sbjct: 3   KILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVMLPDISGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+++R  +   PV +L+      DK+ GL  GADDYI KPFN  E++AR++  +RR + 
Sbjct: 63  VLQSIREKQF-FPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121

Query: 122 HAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    I          L+++++++ V +    I LT  E+ ++  L   +   ++ E   
Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++          +   I K+R+K+       N I+TVWG GY + +
Sbjct: 182 EKVWKEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTIEK 229


>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
 gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
          Length = 243

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + + V      +D          D I+LD+ +    G  
Sbjct: 5   KILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMPGEDGLA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR    + PV +L+      D++ GL+ GADDY+ KPFN  EL ARI++++RR   
Sbjct: 65  VVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHHA 124

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +A  ++  G+  +NL  + +   G  + LT  E+ ++ +L       LT+E 
Sbjct: 125 TPALAALHNADDVVEFGEFVLNLGQRELRRAGQPVSLTSAEFAVLSVLVSHPRRPLTREQ 184

Query: 174 FLNHLYD-GRDEPEVKIIDVFICKLRKKLS--NAAGGKNYIETVWGRGYVLRENA 225
            +      G  E   + IDV I +LRK L   ++     YI+TVWG GYV   + 
Sbjct: 185 LMELALGKGNGESLDRSIDVHISRLRKALESGDSDSQLRYIQTVWGYGYVFVPDG 239


>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 250

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD+  A  I + L+ E   V     G   I+  +    D I+LD+ +  + G +
Sbjct: 4   RILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  ++ ED + GL  GADDY++KP++  EL AR+RA++RRSR 
Sbjct: 64  VCRILRTDS-QVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI  G L ++     V + G  I LTGKE+ ++ LL+       T+   ++ ++
Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRENAKDETC 230
                   + +D  +  LR+KL     G    +ETV+GRGY L +  ++   
Sbjct: 183 GFEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRLADPGREPNA 234


>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
          Length = 245

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+++   +   L++ENF V           + +      +ILD+ + +  GFE+
Sbjct: 23  VLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIMMPEQNGFEL 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+  LS  S   DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 83  CRRIRA-KSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q    ++  G + +NL  + V V+  ++ LT KEY+++ L +       + E  L   +
Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG    +   I V + +LR+K+ +      Y+  VWG GY   
Sbjct: 202 DG--VGDKHTIRVHLSRLREKIESDPNHPQYLVNVWGVGYRFE 242


>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
 gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
          Length = 226

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 113/227 (49%), Gaps = 5/227 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L++EDD  +   I++ LK E ++V +   GE   E    Y    +ILDL L  I 
Sbjct: 1   MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLPKIS 60

Query: 59  GFEVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           G EV + +R   +    + +++  +S + K+ GL+ GADDY++KPF+  EL+ARI A++R
Sbjct: 61  GEEVCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q +   G L +      V + G  + LT  E+ ++       N  L++E  +  
Sbjct: 121 RGGQFCQKISHEG-LVIKPRKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQ 179

Query: 178 LY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ D   +   + ID  I KLR+K+         I TV G GY    
Sbjct: 180 IHPDDEADILDRTIDAHIKKLREKIETEPKKPQRIVTVRGMGYQFVP 226


>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL ++   +TV      I LT +EY ++  L       +T+E  ++ 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 184 VWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 248

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD ++   +   L +  ++V   D G+  +      + D I+LD+GL DI GF V
Sbjct: 15  VLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR   + TPV  L+  + +ED++ GL SG DDY++KPF+ +E++ RIRAI+RRS   
Sbjct: 75  TRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDMP 134

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +  +   DL ++     V   G  I L+  E++++  L  +    + K+  L+ 
Sbjct: 135 PSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILSE 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      + +I+D ++  LR+K+         I+TV G GY L
Sbjct: 195 VWHYDFAGDARIVDTYVRNLRRKI--DRFEPQLIQTVRGVGYCL 236


>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 220

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  + + ++L L  E ++V   + GE  I+L     FD +ILD+ L    G+ 
Sbjct: 3   KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR ++    S PV ILS     ED++ G + G D+YI+KPFN + L+ARI+A+++ +  
Sbjct: 63  VLREIK-KYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNTSN 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +   +I  G + +N  + TV V G  + L  KEY+++  L       L+++  L  ++  
Sbjct: 122 NTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + ID  I  LRKKL         I+TV G GY   
Sbjct: 182 DFPGSDRTIDTHIKNLRKKLGE-----ECIKTVRGIGYKFE 217


>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
 gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
          Length = 267

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 114/235 (48%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L  + + V   D G+    L     FD ++LD+ +    G  
Sbjct: 30  RILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMPGEDGLS 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +L+      D++ GL+ GADDY+ KPFN  EL ARI A++RR R 
Sbjct: 90  LCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQRM 149

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        I  G  S++L  + +   G  I LT  E+ +++ L+      L ++ 
Sbjct: 150 LGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRDR 209

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +        E   + IDV + +LR+ + +      YI+TVWG GYVL  +   E
Sbjct: 210 LIELSRGRDHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVLVPDGGAE 264


>gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
 gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [alpha proteobacterium
           BAL199]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD   A  +E     + + V  T  G +G+ L    ++DA++LD  L  + G  
Sbjct: 4   KILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRMLPGLDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+A+R A + TPV ILS M +++++VRGL++G+DDY+ KPF   EL ARI A++RRS  
Sbjct: 64  VLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSAA 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S +V  DL ++L ++ V   G  I L  +E+QM+E L       +T+ M L  +
Sbjct: 124 GTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV I +LR+K+         I TV G GY+L
Sbjct: 184 WNYHFDPQTNVIDVHISRLRQKVDKDFDSP-LIHTVRGSGYML 225


>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    G    ++  G L +N D+  V  V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|297562675|ref|YP_003681649.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847123|gb|ADH69143.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  +E  +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVAR+R  +RR+  
Sbjct: 64  VCRQIRAESG-VPIVMLTAKSDTIDIVLGLESGADDYIVKPFKPKELVARVRVRLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++  GD+++++    V   G +I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEVLQIGDITIDVAGHAVRRDGEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEVVVTVRGVGYK 221


>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
 gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
          Length = 235

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +E+ LKS+ + V+    G +G+E+ +  E    I+D+ +  + G  
Sbjct: 5   HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTMKLRE-KYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRM 123

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A         Q++ V G L +N     V V G  + LT  EY+++ LL        + E
Sbjct: 124 FAEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAE 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +++         I V I  +R+K+ +      Y++ VWG GY + + A
Sbjct: 184 EIYERVWN-EKAINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIEKQA 235


>gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
 gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149]
          Length = 240

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 11/233 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+ +DDK +  +IE+ L  E + V     G   +++ +      +ILD+ +  +
Sbjct: 8   MKMYSILVCDDDKEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETVHLLILDVMMPRL 67

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G      +R    S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +R
Sbjct: 68  DGIRATLKIRETN-SIPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLR 126

Query: 118 RS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            +++   G L +N D K V V G  + LT  EY ++ LL   +    +
Sbjct: 127 RYTQLGGNVSSTQETIYEVGGLRINDDLKEVTVDGEMVRLTPIEYNILLLLMKNQGRVFS 186

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 187 INQIYESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 239


>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
           [Corynebacterium diphtheriae]
          Length = 236

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 123/227 (54%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +++ LK + F V     G + +E  + ++ DA ILD+ +  + G+E
Sbjct: 10  RVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMPGMDGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 70  LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H      + +V  DL++N D   V   G  + L+  E+ ++  L L     L+K   LN+
Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  +++ +I  LR+K+         I+TV G GYVLR+ 
Sbjct: 190 VWHYDFGGDGNVVESYISYLRRKV--DTQEPALIQTVRGVGYVLRKP 234


>gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++ +A  +EL L+S+ ++++    G++ ++     + D  +LD+ L DI GF
Sbjct: 1   MNILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R  K + PV +L+      DK+ GL  GADDYI KPFN  ELVAR++A +RR  
Sbjct: 61  EILKRIRE-KYTFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYT 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +         +I  G L +N  +         + LT  E+ ++ LL   +   ++ E  
Sbjct: 120 QYNDVGKNEGDIIDFGALFLNRTSHECVYYDKELTLTPIEFDILWLLCENRGRVISSEEL 179

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +        + V I  LR+K+S   G  ++I+TVWG GY + E
Sbjct: 180 FRTVWKEQYYKNSNNTVMVHIRHLREKMSEPTGKSDFIKTVWGVGYKVEE 229


>gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 221

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD A+   ++  L +E   V     G    E       D  I+D  L  + G +
Sbjct: 3   QVLIVDDDPAILEILQAYLVAEGHTVLSASDGFGAREGLPRA--DLAIIDWMLPGVSGMD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R  R A +  P+ +L+     EDK+RGL  G DDY+ KPF+  E++AR+RA++RR   
Sbjct: 61  LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDLS++L + T  + G  + L+  E+ ++  L+       T+E  L  ++  
Sbjct: 121 REE--VSIGDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWGS 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +++DV I  LRKKL + +    +IETV G GY  RE 
Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRFREE 221


>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 231

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L  E ++V     G + +++ +  +   ++LD+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDVHLLVLDVMMPRLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRENN-SIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++ +   G L++N D K V V G  + LT  EY ++ LL   +    + +   
Sbjct: 123 GGSVKEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 217

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I  LR+KL +    ++YI+TV G GY   
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214


>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
 gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
          Length = 231

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD+ +   + + L++E F +     G+  +E  + Y + D +ILD+ +  + G
Sbjct: 1   MKILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V+  +R    + P+ +LS  S+  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  ISVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRRT 120

Query: 120 RG-----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +   I  G L +N  +  V  + G  I LT  E+ ++ LL+   N   + + 
Sbjct: 121 SALTKESESAEEITIGPLLINKGSHQVTTLDGLEIQLTVLEFGILFLLASHPNKVFSADE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++        K + V +  LR K++ A GG   IETVWG GY + 
Sbjct: 181 IFETVWQQESIVSTKTVMVHVSHLRDKIAEATGGDKVIETVWGVGYKIE 229


>gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 238

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 111/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D+  +   +E +L+ E +  +     G++ +E      +D I+LD+ L D  GF
Sbjct: 5   KILIIDDEPGIVKMLETILRKEGYTSISSAFTGQEAMEKISRNLYDLIVLDVMLPDTDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + +R    + P+  L+  S   DK+ GL  G DDYI+KPFN  E+ ARI    RR  
Sbjct: 65  RLCQEIRR-HTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLE 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              + G    +   G ++++  A  + V G  +    KE++++  L+   N   T     
Sbjct: 124 QYQNAGQTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            H++      + K + + I +LRKK+   A   + I  + G GY      + E
Sbjct: 184 EHIWGYDSIGDEKTVSIHIMRLRKKIERDAKNPSLIVNIRGIGYKFIPPKQGE 236


>gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 252

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 115/226 (50%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D  I+D  L    G 
Sbjct: 28  MKILIIEDDLEAAAYLTKAFREAGIVADHASDGESGLFMGTENAYDVAIIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 88  SVISELRRKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 148 TPDQDVLYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFSQP-LLKTIRGAGYMIKDEG 252


>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 226

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + + V D G+ G++L   + +D +ILD  L  + G 
Sbjct: 1   MRILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + LR    +TPV  L+   +++D+V GL  GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRRSP 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q  +   DL ++ + +     G  I L+ KE  ++    L     LT E    
Sbjct: 121 TFEANISQERLKAADLELDPENQMAYRHGRGISLSEKEVMLLSYFMLHPGQLLTHEQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           HL+  +++P   ++   +  LR+K+         I TV+G+GY   E
Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKIEADGELP-LIHTVYGKGYRFGE 226


>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas fluorescens Pf-5]
 gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    E + +DV I +LRK L +A      ++TV G GY     A
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRFSTKA 229


>gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 229

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +   +   L+   F V  T  G +          D ++LD+ L DI G  
Sbjct: 6   RVLVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVMLPDIDGLL 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L  A    PV  ++   S  DKV GL  G DDY++KPF  EEL+ARI+A++RRSRG
Sbjct: 66  LAERLVHAIGPVPVVFVTARDSTADKVAGLARG-DDYVTKPFRMEELIARIQAVLRRSRG 124

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DL ++ + + V   G  I L+  E++++    + +   L+K   L+H++
Sbjct: 125 WDAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     +  I++ ++  LR+K+         I T+ G GYVLR  
Sbjct: 185 NYDFRGDANIVESYVSYLRRKI--DTTEPKLIHTLRGVGYVLRPP 227


>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GF 
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFG 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ ++    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKGIKKL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVVEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
 gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter sp. DR1]
          Length = 223

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGMQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L A  V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYDLKLIHTIRGLGYKI 219


>gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
 gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
          Length = 232

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDI 57
           MRIL+ +DD+ +   + + L +E ++V     G   +   K    +E   IILD+ +  +
Sbjct: 1   MRILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G +VL  LR A   TPV +LS  SS +DK++GL SGADDY++KPFN  E++AR+++I+R
Sbjct: 61  DGMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILR 120

Query: 118 RSRGH-----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R   +        +I  G L +   +  V  +    I LT  E+ ++ LL+   N   + 
Sbjct: 121 RQSTYQKEVAEPDVIEIGPLIIRRASHEVKTLTDKDIQLTALEFGILYLLASHPNQVFSA 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E     +++       K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 181 EEIFEAVWNQESIVSAKTVMVHVSHLRDKIEAATEGERVIQTVWGVGYKIE 231


>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
 gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
           20098]
          Length = 242

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E ++  V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVADRP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   +TV + G  +HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++D  D    + +D  +  LR KL     G + I TV G GY     +  E
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GPDMIRTVHGVGYAFEPPSDGE 242


>gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGAYLQQGLAEAGFTVDRVLTGTDALQHALSESYDLLILDVMMPGLEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVLR +R A    PV  L+    ++D+V+GL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              AQ+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V I +LR K+ +       I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKIDDDFA-PKLIHTARGMGYMM 221


>gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
 gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +   +D +I+D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  + TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDIP-LLHTVRGAGYMLKAPDK 226


>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +   I   L+ +   V+    G++ +E  +    D IILDL L D+ G E
Sbjct: 6   RVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +A+R  K   P+ +L+     +  + GL  GADDY++KPF+  EL+ARI A++RR   
Sbjct: 66  ICKAIR-KKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRRVSE 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A        +  GDL V++  + V  +G  I+LT  EY+++  L      T T+E  +N
Sbjct: 125 EAVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELIN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     +   ++ID  +  LR+KL        YI TV G GY L
Sbjct: 185 AVLGEDYDGYDRVIDTHVKNLRQKLETNPKEPEYIITVHGTGYRL 229


>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 268

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G+  I+  + +  DA++LD+ L D+ G  
Sbjct: 43  RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGLA 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 103 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 162

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 163 ADRRSESMLVVGDLTLDEDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDRV 222

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 223 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 265


>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 249

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   + + L+ E + +     G+  +   + +  DA++LD+ L D+ G  
Sbjct: 24  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGLA 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 84  ILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 143

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 144 ADRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 204 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 246


>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
 gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
           14600]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +I++++D+  +   +   L  + ++V     GE+ ++L  + +E   IILD+ L  + GF
Sbjct: 12  KIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSGF 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ IL+  S  +D+++G   G D+YISKPF+ + LVAR++AI+RRS 
Sbjct: 72  DVAREIRETS-KVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q+ +   G + ++  A TV V G  I L+ KE++++      +   L++E  LN ++
Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     + + ID  + KLR K+        YI T+WG GY   
Sbjct: 191 DYDYFGDARTIDTHVKKLRAKIGEKGS---YIRTIWGMGYKFE 230


>gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 611

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 119/225 (52%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL EDD+++A ++   L  +   V V   GE    L +   +D I+LD+ L  + G 
Sbjct: 1   MKVLLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR      PV +L+G+ +  DKV GL +GADDY+ KP +  EL ARIRA++RR  
Sbjct: 61  SLCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G L ++ +   V  QG  +HLT KEY ++EL         ++   ++HL+ 
Sbjct: 121 AALPPVLEWGPLRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRGGRRVYSRRAIVDHLWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + PE   +   +  LR KL       + IETV+G GY L+  A
Sbjct: 181 FEEPPEEDTVKAHVKGLRHKLRAVGAPADLIETVYGLGYRLKPQA 225



 Score = 81.8 bits (202), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  L  ++  +L      +             + +  D ++LD+ +  + G E
Sbjct: 489 KVMIVDDDAPLLAALRALLAPWGLQLLTLADPLQFWRQLESFRPDLLVLDVEMPHLSGIE 548

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R        PV  LS  +  E   R    GADD+++KP +   L  RI   + R 
Sbjct: 549 LCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVAKPVSGPNLAMRILNRLERR 608

Query: 120 RG 121
           R 
Sbjct: 609 RS 610



 Score = 47.9 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLG------LTDIP---GFEVLRALRVAKIS 72
            E F + V    E      + +  D ++LDL       L        + +L  L   +  
Sbjct: 377 REVFLLDVVCGVEAAHVWMEHHRPDLVVLDLHPALAERLPAADEAARWSLLGELAARRPP 436

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD 131
            P  +LS   S E+++   + G+  ++ KP   E +V  +  ++ R+R     +++  D
Sbjct: 437 IPALVLSDRHSFEERIEATRLGSRAFLEKPVGPERVVGTVERVLERARRRTAKVMIVDD 495


>gi|315303259|ref|ZP_07873903.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
 gi|313628371|gb|EFR96860.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL
           F6-596]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  N      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEINATFVHDGKLGYETFLKEDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
                   + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 SSTLAETDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K+  A   K ++ T+WG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKI--ATETKPFLHTIWGVGYKFDET 227


>gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
 gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1]
          Length = 227

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 129/229 (56%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++     ++  L    + V ++  G D + L    ++D I+LD+ L  + G+
Sbjct: 1   MKLLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIMLPKLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR + I TPV ILS    +ED+V+GL+ GA+DY+ KPF   EL+AR++  +R   
Sbjct: 61  QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S++   DLS++L  +        I LT KE+ ++E L  ++   +T+    + +
Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   + +  +ID  + +LR K+ +       I+TV G GY L ++A++
Sbjct: 181 WDMNFDSDTNVIDAAVKRLRSKI-DKPYQIKLIQTVRGMGYKL-DDAEE 227


>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
           [Zunongwangia profunda SM-A87]
 gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
           protein [Zunongwangia profunda SM-A87]
          Length = 222

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  ++  ++  L+ E+F V + D G+ G+EL    ++D ++LD  L  + G 
Sbjct: 1   MRILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R  R     TPV  L+   ++++ + GLQSGA+DYI KPF+ EEL+ RI+  +R   
Sbjct: 61  EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++   G + +N         G  ++LT KE+ ++E L   K    T+   +  ++D
Sbjct: 121 GE-HAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LR+KL      +NYI+TV G GY+ +E+
Sbjct: 180 INFSYNTGVIDVYINALRRKLDLD-QDENYIQTVRGVGYIAKES 222


>gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
 gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 128/226 (56%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  ++  I   L+   FNV +    E+  E+   + FD II+D+ L  I G 
Sbjct: 1   MQILLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVMLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  K  TP+ +LS ++  EDK+  L SGADD++ KPF+ +EL++RI A+ RR++
Sbjct: 61  QLTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTK 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              Q    + +V  +L ++ D   V   G +I L+ KE++++  L+   +  +++ M LN
Sbjct: 121 YQKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    +    ++DV+I  LR K+        +I TV G GY+ +
Sbjct: 181 AVWGINFDNNTNVVDVYISYLRNKIDE--SKHQFILTVKGTGYMFQ 224


>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 236

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L+   + V      E          +  ++LDL L    G  
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R LR A+   P+ +L+      +++ GL +GADDY+ KPFN +EL ARIRA++RR   
Sbjct: 67  ICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHVR 126

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  G   ++L  +T+   G    LT  E+ +++ L       LT++  
Sbjct: 127 ELPGAPSKEEGSVTFGPWILDLANRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++           + IDV + +LR+ L +      YI+TVWG GYV   +
Sbjct: 187 MSLARGREWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVFVPD 236


>gi|124266767|ref|YP_001020771.1| osmolarity response regulator [Methylibium petroleiphilum PM1]
 gi|124259542|gb|ABM94536.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 236

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 101/223 (45%), Gaps = 8/223 (3%)

Query: 11  ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70
            +   +   L  E F V + +  +    +      D I+LDL L    G  + R LR   
Sbjct: 12  RIRDLLRRYLTQEGFEVLLAEDAKALNRVMTRDTIDLIVLDLMLPGEDGLSICRRLRANN 71

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGH 122
            +TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +   
Sbjct: 72  DTTPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRPTLEAPGAPAK 131

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G    +L  + +   G +I LT  E+ M++ L       L+++          
Sbjct: 132 EAQTVSFGPFEFDLALRRLTKDGEQIALTTGEFSMLKALVRHPRQPLSRDKLAQLARGRE 191

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            EP  + +DV I +LRK +        YI+TVWG GYV   + 
Sbjct: 192 FEPFDRSLDVQISRLRKMIEPDPAQPRYIQTVWGVGYVFVPDG 234


>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
 gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC3088]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 7/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+ A+   + + L+  +      D   D   +      D ++LD  L   
Sbjct: 1   MKNCSVLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWMLPGG 60

Query: 58  PGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            G E+LR L+  K++   PV +L+  +S ++ ++GL  GADDYI+KPF   EL+ARIRA+
Sbjct: 61  SGIELLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRAL 120

Query: 116 VRRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +RRS     S  I  G+L +++ +  V + G  + +   E++++           T+   
Sbjct: 121 LRRSGAMPSSERIEAGELVLDMSSHRVFLAGEPLAMGPTEFKLLSFFMSHPERAYTRSQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225
           L+ ++ G    E + +DV I +LRK L N  G   ++I+TV G GY      
Sbjct: 181 LDQVWGGNVYVEERTVDVHIRRLRKALQNDMGDCSHFIQTVRGTGYRFSPPG 232


>gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231]
 gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19]
          Length = 232

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E FN      G   +E     E D ++LDL L  + G +
Sbjct: 11  KILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMNGID 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  +   D V GL++GADDYI+KPF  +EL+AR+RA +RR+  
Sbjct: 71  ICRLIRQ-NSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I   DL++++    V      I LT  E+ ++  L+ +     T+E  L  ++  
Sbjct: 130 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+         + TV G GY 
Sbjct: 190 RNASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 228


>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
 gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
          Length = 227

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I +ML+SE++  +    G   +   +      ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLMLPGLDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           + R +R      PV +L+  +  +D V GL++GADDY++KPF  +EL+AR+R  +RR + 
Sbjct: 64  ICRLIRAES-DVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGTE 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GD+ +++    V   G  + LT  E+ ++  L+   +   T+E  L  ++ 
Sbjct: 123 AGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 HQHAADTRLVNVHVQRLRSKVEKDPEHPTIVVTVRGVGYR 222


>gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
 gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
          Length = 239

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 114/233 (48%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +E+ LKS+ + V+    G +G+E+ +  +    I+D+ +  + G  
Sbjct: 9   HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKEDIHLAIVDIMMPRMDGIS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  K   PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 69  MVVKLRE-KYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 127

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +   G L +N D   V V G  + +T  EY+++ LL        + E
Sbjct: 128 FMERLGDKEENSRIHTIGGLEINEDNVEVTVDGEPVKMTPIEYKILLLLMKNPGRVFSAE 187

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +++ R       I V +  +R+K+        Y++ VWG GY + + A
Sbjct: 188 EIYERVWNER-AINTDTIMVHVRNIREKIEVNPREPKYLKVVWGVGYKIEKQA 239


>gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
 gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
           202-4]
 gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22]
          Length = 242

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E 
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEAREE 240

Query: 233 L 233
            
Sbjct: 241 A 241


>gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus 10329]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    +
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 227


>gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 239

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L        IILDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ ++S      D++ GL+ GADDY+SKPFN  EL+AR+RA++RR   
Sbjct: 66  VCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQTH 125

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +++  G   ++L  + +     ++ LT  E+ ++++L       L+++  
Sbjct: 126 ELPGAPTSDDTVVKFGKFKLDLGTREMFHHDEQLSLTSGEFSVLKVLVSYPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV + +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MSLARGREYGAMERSIDVQVSRLRRLIEEDPAQPRYIQTVWGLGYVFIPDG 236


>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
           BAA-613]
 gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  ++SE+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 239

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 117/228 (51%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + ++L++E + V     GE  +   K  + D IILD+ +  + GF+
Sbjct: 14  RILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAV--AKAEDMDLIILDVMMPKMDGFK 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             R +R    + P+  L+  +  +DK  G  SG DDY++KPF+  EL+AR++A++RR   
Sbjct: 72  ACRQIREV-TNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 130

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I+  DL ++ ++  V+ +   ++LT  EYQ++ LL+       + +  
Sbjct: 131 YKGKEEPQEGDQIIMHDLIISRNSNQVKKKEEAVNLTEMEYQILLLLADHPKKIFSNQEL 190

Query: 175 LNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++ G         I V I  LRKKL        YI+TVWG+GY  
Sbjct: 191 YEAIWKGPYMYSANNTIMVHIRNLRKKLGVDPQNPVYIKTVWGKGYRF 238


>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
           [cyanobacterium UCYN-A]
 gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
           [cyanobacterium UCYN-A]
          Length = 246

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD A+   I   L+   +++     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +LS +   +DKV G  +GADDY++KPF   E++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFEQTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230


>gi|296130171|ref|YP_003637421.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296021986|gb|ADG75222.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 227

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 124/219 (56%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  I ++L+SE F+    + G++ + + +  + D ++LDL L    G E
Sbjct: 4   RVLVVDDDTALAEMIGIVLRSEGFDPVFCEDGDEALGVFRATQPDLVLLDLMLPGKDGNE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYISKPF  +ELVAR+RA +RRS  
Sbjct: 64  VCRQIRGESG-VPIVMLTAKSDTIDVVLGLESGADDYISKPFKPKELVARVRARLRRSDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL++++    VE  G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PAPEHLTIGDLTIDVPGHRVERAGRTISLTPLEFDLLVALARKPWQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIETDPARPEIVVTVRGVGYK 221


>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A +I   L +ENF   +   G  G ++    +FD ++LD+ L  + G++
Sbjct: 3   KILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLPGMKGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LRV K S P+ +L+    IEDKV GL SGADDYI KPF+  EL+ARI A +R S  
Sbjct: 63  VCQQLRVYKPSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSDL 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +  ++   DL +NL  K V   G  I LT KE+ ++E   L +   ++K     H
Sbjct: 123 MHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSKMDLAEH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +P   +++V+I  LRKK+      K  I T  G GY+++E 
Sbjct: 183 VWHLNFDPGTNVVEVYINYLRKKVDKDFPTK-LIHTRPGMGYIMKEE 228


>gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1]
 gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1]
 gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K  F  HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
 gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia
           ATCC 29909]
          Length = 220

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L ++ +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTNQGYACDCAGTAAEAHSLLHTSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +Q   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D+     ++V I  LR+KL     GK+ I TV G GY L   +
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLEAQS 220


>gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 231

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED   LA  I+  L ++ ++V +   GE G+++     FD I+LD+ L  I G E
Sbjct: 4   KILVIEDQSKLASLIQRGLSADGYDVRIASDGELGLDMIYHNAFDLIVLDVMLPGISGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +L+ +S+  + V GL SGADDY+ KPF  EEL ARIR +VRR+ G
Sbjct: 64  VCQLLRKENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRANG 123

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A S I   DL +++DA+     G  I LT  EY+++E +   KN  LT+   L
Sbjct: 124 TNGQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++D        ++DV++  LRKK+ +       I T+ G GY ++E
Sbjct: 184 EHVWDINFNMGTNVVDVYVNYLRKKV-DKGFDVKLIHTMIGVGYSIKE 230


>gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
 gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
           Tu4000]
          Length = 271

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E +     + GED +     +  D ++LDL L D+ GF 
Sbjct: 47  RLLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLMLPDVDGFG 106

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS G
Sbjct: 107 VLDRLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSAG 166

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S++  GDL+++ D + V   G  + LT  EY+++  L  R  T LTK   L+H++
Sbjct: 167 PGFQRSVLRVGDLTMDEDTREVRRGGRTLSLTPTEYEVLRYLMRRSPTVLTKAQILDHVW 226

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        ++++ + +LR+KL +   G+  I+TV G GYV+R+ A+
Sbjct: 227 EYGFGGRSNVVELVVSRLRRKLDDT--GEPLIQTVRGFGYVIRQAAE 271


>gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1]
 gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1]
          Length = 269

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 42  MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 101

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 102 MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 160

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 161 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 220

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 221 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268


>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 224

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ G+E
Sbjct: 3   KILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+       KV+G Q G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 63  LCYELRR-YYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V V    I L  KE++++ +L  +   T ++E  +  ++  
Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K          I+T+ G GY L 
Sbjct: 182 DFEGNERTLDVHINRLREKFQKETASFA-IKTIRGLGYRLE 221


>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
           [Pseudomonas fluorescens Pf0-1]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +     + FD  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL     G   I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-GPAGFKPIDTVRGLGYLFNE 222


>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
 gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
 gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
           Fiocruz L1-130]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +A  I   L+   + V     G + +   +    D IILDL L  I G +
Sbjct: 11  KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIGGMD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++  K S P+ +++  S   + V GL+ GADDY+ KPF+  EL+AR+R+++RR + 
Sbjct: 71  LCKKIKE-KYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRIKD 129

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I  G++ +NL A    +    + LT  EY+++ L         T++  L+ 
Sbjct: 130 EEEDEFEGNITIGNIFLNLKAHKAFINNSEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++        + +DV I +LR KL +    K  +ET+ G GY   E
Sbjct: 190 VWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 232


>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 236

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           IL++ED++ LA+++E  LK E FN  V   GE+G+ +       D ++LDL L  + G E
Sbjct: 5   ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGVSGIE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R      + PV +L+      DKV G ++GADDY+ KPF   ELV RIRAI+RR 
Sbjct: 65  VCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILRRV 124

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +         +  G L V+L+   V V G    LT  E++++     RK     ++  LN
Sbjct: 125 QPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTLLN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++      + + +D  + +LR+KL  A     Y+ET+ G GY  R+    E
Sbjct: 185 DVWGVNAFVQTRTVDAHVKRLREKLGPAG---KYMETIRGVGYRFRDRPDGE 233


>gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 210

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G+D + +     +D +ILD+ +  + G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV--T 129
             P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR     Q       
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQF 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G + +N  ++ +E+ G  I LT KE+ ++  L        ++E  L  ++        + 
Sbjct: 120 GPIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWGYDYAGSTRT 179

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 VDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 209


>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 234

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+  +   +   LK+  +NV   + G   +E  +      I+LDL L ++ G E
Sbjct: 9   RILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLE 68

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+    +   PV +L+  +   D++ GL+ GADDY++KPF+  ELV R+++++RR+
Sbjct: 69  VCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRRA 128

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A+    +V GD+ ++     V + G  +  T  E++++ LL  R+     +E  LN 
Sbjct: 129 SNGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLND 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +D  I +LR+KL  +     YIET+ G GY + E 
Sbjct: 189 VWGYETVIDTRTVDTHIRRLREKLGKSGS---YIETIRGFGYRVVET 232


>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
 gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
           [Magnetococcus sp. MC-1]
          Length = 235

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 11/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           RIL++ED+  L  ++E       F+   T  G + I L     E D ++LDL L  I G+
Sbjct: 4   RILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGY 63

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V + LR  + +   P+ +L+      D+  G  +GADDY++KPF+  EL+ R++A++RR
Sbjct: 64  DVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRR 123

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++       A   +  G L+V+  A  V V G  + LT  E++++      +   LT++ 
Sbjct: 124 AQVVSLPSAAVEDLCFGPLTVDQTAHQVWVNGQEVQLTYMEFKLLVAFLENRGRLLTRDF 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++      + + ID  + +LR+KLS+A     YIET+ G GY  
Sbjct: 184 LLDEVWGLSAAVQTRTIDTHVKRLRQKLSDAG---QYIETLRGAGYRF 228


>gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 228

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +  +++  L+ E + V+V   G +G+ + +  + D +ILDL L D+ G 
Sbjct: 1   MNILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLMLPDMKGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R       + +L+   S+E ++ GL  GADDY+ KPF+  ELVARI+ +VRR  
Sbjct: 61  EICQQIRAIS-DVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMN 119

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G  Q++ +  D  L ++   + V+VQ   +  T  E+ ++ LL   K   LT+E  +N +
Sbjct: 120 GPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + IDV I  +RKK+        YI TV   GY  
Sbjct: 180 LGFDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222


>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 238

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 111/232 (47%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +   ++   + EN+ V     GE+ I     ++   I+LD+ L    GFE
Sbjct: 5   RILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       + +L+  +    KV GL  GADDY++KPF+  EL+AR++A +RR   
Sbjct: 65  VCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRIDL 124

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             Q+           I   D+ ++         G  + L+ +E+Q+++    R+   + +
Sbjct: 125 QTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVLR 184

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L  L+     + P  + ID  I  LR+KL +       I ++ G GY  
Sbjct: 185 EDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKF 236


>gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 227

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  ++  I+L L+ E + V     G  G+E       D IILD+ L  + G E
Sbjct: 5   KILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RS 119
           +LR LR      PV +L+    + DKV GL  GADDY++KPF  EEL+ARIR   +  R 
Sbjct: 65  ILRRLRQVS-EIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     +I  G+L ++L   TV      I LT KE+ +++LL +     LT++  L  ++
Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV++  LR K+ +    + +I TV G GY L+
Sbjct: 184 GYNYAGDTNIVDVYVRYLRIKI-DDRYHQKFIHTVRGVGYQLK 225


>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
 gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
          Length = 233

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +I++ L  E + V     GE+ +++    + D +++D+ +  + G  
Sbjct: 5   KILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVMMPKLDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R A  + P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATLKIREAN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQ 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++   G LS+N D K V V G  + LT  EY ++ LL   +    + +  
Sbjct: 124 LGSTANHKNEAVYEVGGLSINDDLKEVTVDGGPVKLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 184 YESIWNEDAIGVDNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 232


>gi|81428827|ref|YP_395827.1| two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104608|gb|AAD10267.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78610469|emb|CAI55519.1| Two component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 246

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 122/244 (50%), Gaps = 21/244 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M+IL++ED+K+++  + +  + E ++ +    G + +E        +D I LDL L  + 
Sbjct: 1   MKILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R      P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRR 120

Query: 119 SR----------------GHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELL 161
           +                  ++   + T    ++   +   +    I  LT KE+ +++ L
Sbjct: 121 AELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTL 180

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +       ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY  
Sbjct: 181 AKNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEV--GPQVIQTVWGVGYKF 238

Query: 222 RENA 225
            ++A
Sbjct: 239 DDSA 242


>gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 225

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 131/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  L+   ++V V + G DG+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MRILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + +TPV  L+    + D+VRGL+ G DDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLKVLRATR-TTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++++ + V     RI LT +E+ +++LL+ R+   L++    ++++D
Sbjct: 120 PRESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+ +    K  I+TV G GYV+ 
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKIDDDFPVK-LIQTVRGVGYVIE 220


>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 235

 Score =  262 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I + L+   F    ++ GE           D I+LD  L    G +
Sbjct: 6   RVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPGQSGLQ 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +   DL ++     V  QG +I +   E++++  L        ++   L+ +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQIKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR+ L  A      +ETV G GY L
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGVAGA---MVETVRGAGYRL 225


>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 229

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRF 225


>gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C]
          Length = 222

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +K   +       GED   L     +DA+ILD+GL+ + G 
Sbjct: 1   MRILIVEDDRDLNHQLAKAVKDAGYVFDSAFNGEDAYFLGSTESYDAVILDIGLSCMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+   R    S PV +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS 
Sbjct: 61  QVVERWRKEGYSMPVLMLTARDCWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++     V ++G  I LT  E++++  L    +  ++K   + HLYD
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIEGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VFI +LRKKL   +     IETV G GY ++
Sbjct: 181 QDFDKDSNTIEVFIRRLRKKLGVDS-----IETVRGLGYRIK 217


>gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
 gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013113]
          Length = 223

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNNIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 219


>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
          Length = 290

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   +DV I +LR K+ +    +  I T+ G GY       +E
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKNNE 262


>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
 gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
 gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
          Length = 228

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFE
Sbjct: 12  HILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS  
Sbjct: 72  VAKMIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++ +   ++ V+ DA  V +    I LT KE+++++LL   K   +T+E  +  ++ 
Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E ++ID  I  +RKKL  +     YI+TV G GY + E
Sbjct: 191 YEYHGETRMIDTHIKNIRKKLDIS-----YIKTVKGIGYKIDE 228


>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 223

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V V+  G   +E       D I+LDLGL ++ G EV
Sbjct: 4   VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 64  ARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSTE 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                +   + ++ +++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 124 TP---IVQGVRIDAESRRAWMGDQELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                K +D+ I  LR+KL + A    YI TV G G+   
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDAANPRYITTVRGVGFRFE 220


>gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ E +   V + G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    Q ++   DL++    + V      I LT +EY ++  L   KN  +++E
Sbjct: 122 EKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++      E  +++V++  LR K+ +A    +YI+TV G GY++RE+
Sbjct: 182 QLLNKIWGPDSNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232


>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +   I+  L+ E ++V     G++ + +    +   IILD+ + ++ G EV
Sbjct: 8   ILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVMMPEMDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + LR      P+  LS   S  D+++GL +G DDY+ KPF+  EL ARI A +RR    
Sbjct: 67  CKQLRET-TQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRREQRI 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q ++    L+++     V   GH + LT KE+Q++ELL++ +    ++E     L
Sbjct: 126 HTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQIYEKL 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + +   I   I K+R KL+  A  +++I+TVWG GY     
Sbjct: 186 WGLDADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGYKWDPQ 231


>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
 gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           PHL213]
          Length = 228

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+   + L L  + + V   +  +  I      + + I+LD  +    G  
Sbjct: 4   KILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRSGIH 61

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+    +   P+ +L+  SS ED + GL +GADDYI+KPF+ + L+ARI A+ RRS
Sbjct: 62  LIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI    L ++  A+ V V    + L+G EY+++  L         +E  L+ ++
Sbjct: 122 YDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLMTHPEKVYRREQLLDFIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +D +I +LRK L    G + YI+TV G GY    + +D
Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPY-GFERYIQTVRGSGYRFSNHFQD 228


>gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
 gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis
           CGDNIH1]
          Length = 226

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 134/227 (59%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           MRILL+EDDK +A  I   L+     V   D G DG+ +     FDAI+LD  L   I G
Sbjct: 1   MRILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  LR   ++TPV  LS +S ++++V+GL++G DDY+SKPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRG 120

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  A +  +V  DL ++L ++ V+  G +I L  +E++++E L    +  +T+ M L  +
Sbjct: 121 KTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +P+  +IDV + +LR+K+ +     + I TV   GY+LR + 
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRQKV-DKPFTVSLIHTVRNAGYMLRADG 226


>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 248

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K Y+ D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKDS-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 225

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    E   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
 gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
           [Eubacterium eligens ATCC 27750]
          Length = 225

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 122/223 (54%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M++L+++D+  +   +   L  + + V     G + ++      +   IILD+ +  + G
Sbjct: 4   MKVLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPRMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +EV R +R      P+ +L+      D+++G + GAD+YI+KPF+ + L AR+ AI+RR+
Sbjct: 64  WEVCRQIRKDS-KVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRA 122

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  +  +I  G ++++  A  V++ G  I L+ KE++++      K   L++E  LN++
Sbjct: 123 YGVDSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     + + ID  + KLRKK+       +YI+T+WG GY  
Sbjct: 183 WNYDYYGDARTIDTHVKKLRKKMGEKG---DYIKTIWGMGYKF 222


>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 248

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G++ ++L K YE D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  CQELRKDS-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    LI+  D+ ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL         I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQ 237


>gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii NCC 533]
 gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus
           johnsonii DPC 6026]
          Length = 242

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 87/239 (36%), Positives = 138/239 (57%), Gaps = 11/239 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E
Sbjct: 182 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEARE 239


>gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
 gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AYE]
 gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624]
 gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii
           6013150]
          Length = 228

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 66  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + +++
Sbjct: 125 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 185 INFDTDTNFIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 224


>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 235

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + L+ + F V   + G + +++ + +  DA ILD+ +  + GFE
Sbjct: 9   KVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPGMDGFE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +L  LR   +  PV  L+   ++ED++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 69  LLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + S +   DL++N D   V   G  I L+  E+ ++  L L     L+K   L++
Sbjct: 129 TADADSDSTLRYADLTLNDDTHEVTKSGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 189 VWHYDFGGDGNVVESYISYLRRKV--DTGDVPLIHTVRGVGYVLR 231


>gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001]
 gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DD  L   ++  L  + + V     G+      +    D ++LDL L    G  
Sbjct: 6   RIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLMLPGDDGLC 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR      PV +L+G     D++ GL+ GADDY++KPF   EL ARI A++RR   
Sbjct: 66  LLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRGS 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +     S I  G   ++  ++ +E QG  + +T  E+ ++   +   +  L++E  
Sbjct: 126 GPAGAPQAEASPIPFGAWVLHPSSRQLERQGQPVSITSGEFSLLLAFAQHPHRPLSRERL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        + + + +DV + +LR+ + +      +I+TVWG GYV   + +
Sbjct: 186 IELSRGPTSDTDARSMDVQVSRLRRLVEDDPSQPRHIQTVWGYGYVFVPDGQ 237


>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 240

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD+ LA      L+S    V V   GE+ I   +  + D ++LDL L    G  V
Sbjct: 11  IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLMLPGADGLTV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R A  + P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR    
Sbjct: 71  CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVETD 129

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R ++ + +  G L ++  A+ V + G  + LT  EY ++ LL+    T L++E     
Sbjct: 130 SERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFEK 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L   + + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 190 LRGIQYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLFVKE 236


>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
 gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudomonas entomophila L48]
          Length = 229

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PSDSEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L  A      ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEAYEN--LVQTVRGTGYRF 225


>gi|300693441|ref|YP_003749414.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Ralstonia
           solanacearum PSI07]
 gi|299075478|emb|CBJ34771.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Ralstonia
           solanacearum PSI07]
          Length = 224

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+RR  
Sbjct: 61  QVIRELRRHK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 120 MRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 180 VNFDSNTNVVDVAIRRLRAKV-DDPFEHKLIHTLRGMGYVLDTAAR 224


>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 234

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 73  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I+T+ G GY L 
Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYRLE 231


>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis Bl-04]
 gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis DSM 10140]
 gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis V9]
          Length = 235

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ +    +   L  E +  +    GE+  EL +  EFD ++LDL L  I G  
Sbjct: 3   RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGISGTT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +   +   P+ +++  S+  D + GL+ GADDY++KP++  EL+ARI A++RRS  
Sbjct: 63  LCRRMHELR-RVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 121

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G     +  G + +++ +  V + G       KE++++E L   K   LT++ 
Sbjct: 122 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  ++      + K +DV + ++R K+         + TV G GY +
Sbjct: 182 LIGRVWGSDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 229


>gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
 gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AQ3810]
          Length = 230

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I+TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    +
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV + +LR K+ +    +  I TV G GY L E+
Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227


>gi|153947115|ref|YP_001401057.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958610|gb|ABS46071.1| DNA-binding heavy metal response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 230

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 135/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +       + TV G GYVL    + +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DTPYPVKLLHTVRGMGYVLETRPERQT 229


>gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 222

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ ++   LK+E F V     G DG+       FD +ILD+ L    G+
Sbjct: 1   MRVLLVEDEARLSATLARGLKAEGFVVVAVGTGVDGLREAVDNNFDVVILDIMLPGHSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R   + TPV +L+      D+      GADDY++KPF+   LVAR+RA+VRR  
Sbjct: 61  EVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  G L ++    +V+   + I LT +E+ ++E L   K+  +TK   L +++D
Sbjct: 121 PQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADILRNVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +++V++  LR+K+ +   G N IET+ G GY L
Sbjct: 181 AHYHGPDNVVEVYVGYLRRKI-DIPFGTNTIETIRGVGYRL 220


>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
 gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylophilales bacterium HTCC2181]
          Length = 231

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++++   I + L    FN   +   E   ++ +    D IILD  L  + G E 
Sbjct: 5   ILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWMLPGMDGVEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R +  +   P+ +L+  S  ++K++GL  GADDY++KPF+ +EL+ARI+AI+RR+ 
Sbjct: 65  AKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRRNA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++     +      I +   E++++       N   ++   L+ ++
Sbjct: 125 PELVNEPINMNGLELDPIKYVLTNNDKIISIGPTEFKLLNFFMSNPNIAFSRNQILDKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + + + +DV I +LR  L    G  + I+TV G GY L +
Sbjct: 185 GNKSDIDDRTVDVHIKRLRDTLK-HTGQHSLIKTVRGLGYRLEK 227


>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
           vagans C9-1]
 gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 229

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VSGHDRMVQTVRGTGYRF 225


>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 227

 Score =  262 bits (670), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L EDD  +A  I+  L+ + + +     G+  +E      FD +ILD+ +  + G E
Sbjct: 3   KIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R LR +  + P+ +L+ +S+++DKV GL++GADDY++KPF+ +EL+ARI A++RR   
Sbjct: 63  LCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRRYST 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   Q  +   ++++N  +K V+  G  I LT KE+ ++EL     N  L+++    
Sbjct: 123 GTIQKQHQHELTFENITLNTYSKEVKRAGINIELTAKEFTLLELFLRNPNRLLSRQYIAE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +D   +    +IDV++  LR K+      +  I T    GY+L+
Sbjct: 183 NAWDINFDTGTNVIDVYVNFLRNKIEK-GFDRKVIHTKINMGYILK 227


>gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
          Length = 240

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 59/238 (24%), Positives = 118/238 (49%), Gaps = 15/238 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   + L+L++E F       G   +E+    + D I+LD+ L  + G  V
Sbjct: 4   IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  S   D V GL++GADDY+ KPF   EL+ARI A  R ++  
Sbjct: 64  ARRIRATS-NVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKPA 122

Query: 123 AQ--------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           A+              + +  G + ++    T    G  ++LT  E++++ +L+      
Sbjct: 123 AEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEA 182

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   L +++   +  + ++++V + +LR K+ +       ++TV G GY      +
Sbjct: 183 ISRPSLLKNVWGYENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKFVTPEQ 240


>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
          Length = 224

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  ++  L    + V     G DG+ L   + ++ +ILD+ L    G+
Sbjct: 1   MRILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR       V +L+    + DK++GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLEQLRRNGTQ-RVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSE 119

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +    DL ++           RI LT KE+ ++++L  +    LT+   ++ ++
Sbjct: 120 HIPQPEVFSVQDLELDPRRHRAYRGSRRIDLTTKEFALLQVLMRQTGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSISRLRAKV-DDQSEVKLIHTIRGVGYVLE 221


>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D   +   +  +L+   F+V       + +          ++LD+ L D  GFE
Sbjct: 6   RVLVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLLPDGDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR A     +  L+   +  D++ GL  G DDY++KPF+ EELVAR+RA++RR   
Sbjct: 66  VCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRRIGS 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A  ++   DL ++ +   V   G  + L+  EY+++  L L     L++   L+ +
Sbjct: 126 TPVPATGVLRYADLELDEETCEVRRGGRLLSLSPTEYKLLRHLMLNPGRVLSRAQILDAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +    ++D +I  LR+KL     G   IET  G GY LR   
Sbjct: 186 WRYDFDGASNVVDTYIGYLRRKL--DPLGPPLIETRRGFGYALRAPG 230


>gi|225027798|ref|ZP_03716990.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
 gi|224954848|gb|EEG36057.1| hypothetical protein EUBHAL_02057 [Eubacterium hallii DSM 3353]
          Length = 232

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 129/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L + ++  L+ + + + +   GE   +    Y +D I+LD+ L  I G 
Sbjct: 11  MRMLIVEDEKDLCNILKKRLQKD-YTIDICMDGEIAKDYLNTYTYDIILLDIMLPKIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L+ LR  K +TPV +L+  SSIE++V GL SGADDY+ KPF  EEL AR+R ++RR+ 
Sbjct: 70  TLLKWLRNQKKTTPVLLLTAKSSIEERVNGLDSGADDYLIKPFAFEELQARLRVLLRRNI 129

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +++  DL ++   K V   G  I LT KEY++++ +       L+++      +
Sbjct: 130 AADPSDILIYEDLVMDTKKKKVSRNGKEISLTTKEYKLLQYMMRNPGHVLSRDQLEQRGW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   E    IIDV+I  LRKK+ +    K  I TV+G+GY L E
Sbjct: 190 DSTFEGGSNIIDVYIRYLRKKIDSD-YEKKLIHTVYGKGYCLGE 232


>gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
 gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
           1131]
          Length = 249

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    +        I+LDL L    G  
Sbjct: 16  KVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDGLS 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 76  ICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 135

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G   +NL  + +      + LT  E+ ++++L       L+++  
Sbjct: 136 ELPGAPSQDDAIITFGKFKLNLGTREMFQGDENMPLTSGEFAVLKVLVSYPREPLSRDKL 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 196 MSLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 246


>gi|51596319|ref|YP_070510.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186895361|ref|YP_001872473.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis PB1/+]
 gi|51589601|emb|CAH21231.1| transcriptional activator [Yersinia pseudotuberculosis IP 32953]
 gi|186698387|gb|ACC89016.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis PB1/+]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +       + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DTPYPVKLLHTVRGMGYVLETRPDRQT 229


>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
          Length = 235

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  +   + + LK + F V   + G + +++ + +  DA ILD+ +  + GF
Sbjct: 9   IRVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   + +PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR  
Sbjct: 69  ELLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGG 128

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   DL++N +   V   G  I L+  E+ ++  L L     L+K   L++
Sbjct: 129 AVEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDN 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+         I+TV G GYVLR
Sbjct: 189 VWHYDFGGDGNVVESYISYLRRKV--DTQDPQLIQTVRGVGYVLR 231


>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
 gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
           [Sphingobium japonicum UT26S]
          Length = 233

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  + G E
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESLSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    + E++ +DV I +LRK ++     ++ I TV   GY L  + 
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYALDTDG 231


>gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional
           regulatory protein phoB [Deinococcus deserti VCD115]
 gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon
           transcriptional regulatory protein phoB [Deinococcus
           deserti VCD115]
          Length = 223

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD A+   +   L +E   V     G++   L      D  ++D  L    G  
Sbjct: 3   RVLIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALLPRA--DVAVMDWMLPGAAGPV 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R A +  P+ +L+     EDK+ GL+ G DDY+ KPF+  E+VAR+RA++RR   
Sbjct: 61  LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGV 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    + +  L+++L  +TV V G  + L+  E+ ++  L+L      T+E  L  L+  
Sbjct: 121 HQD--VRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWGP 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +++DV I  LRKKL +      YIETV G GY  RE  
Sbjct: 179 DFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRFRERG 222


>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
 gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
           15579]
          Length = 221

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V G  I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNGKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   L+ +++ V+    GE+ +E  K Y  D I+LD+ +    G+E
Sbjct: 4   KILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIMMPGKNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R   +S P+  L+      D V+GL SG DDYI KPF+  +L ARI A +RR + 
Sbjct: 63  VCNDIRDI-VSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKR 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +  +     +   ++S+NL  + V   G  + LT KE+ +IE LS+      +KE     
Sbjct: 122 NTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    E +   +   + K+R K+ N    + YI TVWG GY   +
Sbjct: 182 VWGYDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGYKWEK 227


>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++  L+ E F V     G DG+ L +  E+ AI+LD+ L  + G+
Sbjct: 1   MRILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR A + TP+ +L+      D+  GL  GADDY++KPF+   L+AR+RA+VRR  
Sbjct: 61  QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL +   A         I LT KE+ ++E L+ R    ++K   ++ ++D
Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    +++V+I  LR+K+ +   G+  I T+ G GY+L  + 
Sbjct: 181 TAYEGGANLVEVYIRTLRRKI-DVPYGRQAIRTIRGAGYLLARDG 224


>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
 gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
 gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 61  NGFEVSKMIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  + 
Sbjct: 120 RSYDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221


>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
           44985]
 gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 240

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A+ +   L ++ F+V       D + +      DA+ILD+ L  + G+ +
Sbjct: 16  ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR +R      PV  L+   S+EDK+ GL  G DDY++KPF+ EE+VAR+R I+RR+   
Sbjct: 76  LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V  D+ +N +   V   G  + L+  E+ ++    +     L+K   L H+
Sbjct: 136 DGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILEHV 195

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++ +++ ++  LR+K+    G K  ++T+ G GYVLRE 
Sbjct: 196 WHYDFGGDMNVVESYVSYLRRKI--DTGEKKMLQTLRGVGYVLREP 239


>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 248

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G + +E  +  E D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  IQELRKES-DVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIEKE 129

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I      ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 HIAGLPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Streptococcus pyogenes M49 591]
 gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
 gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
 gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
 gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
 gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
 gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
           [Streptococcus pyogenes]
 gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
 gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
 gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
 gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
 gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
 gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
 gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
 gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
 gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
 gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
 gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
 gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
 gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
 gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
 gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
 gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
 gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
 gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
 gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
 gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
 gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
 gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
 gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
 gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
 gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
 gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
 gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
 gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
 gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
 gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
 gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
 gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
 gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
 gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
 gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
 gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5]
          Length = 232

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ +A  +   L  E F       G  G      +  D ++LD  L D  G +
Sbjct: 5   KILIIEDEEPIADLLAYGLAMEGFETRTASSGAAGFRELAAFHPDLLLLDWMLPDQSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +     + P+ +++  S I DKV GL+ GADDYI+KPF+  E+VARIR I+RR   
Sbjct: 65  ICKKV-TTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G  +++I    + +  + + V   G  + LT KE+ ++  +   +    T+  
Sbjct: 124 ANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRSE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+ ++      + + +D  I +LRKKL       + I TV+G GY   + A+
Sbjct: 184 LLDLVWGYDFMGDTRTVDTHIQRLRKKLD----AGDLITTVFGIGYKFEKQAE 232


>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
 gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseomonas cervicalis ATCC 49957]
          Length = 238

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L+ + F V     G++ +        D ++LD  L  + G EV
Sbjct: 13  ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPALSGLEV 72

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +++  +  +D VR L +GADDYI+KPF  + L+ARIRA++RRS 
Sbjct: 73  CRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRRSG 132

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +  +   D++++ DA  V   G  +HL   EY+++E          ++E  L+ ++
Sbjct: 133 GVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK + N  G  + I TV   GY L
Sbjct: 193 GRDIHVEPRTVDVHIRRLRKAV-NGEGEVDIIRTVRSAGYAL 233


>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 224

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   ++   + E + V   + G   +EL K  +FD II+D+ +  + GF 
Sbjct: 3   RLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K + PV +LS      DK+ G + G DDY+ KPF+ +EL+AR++A+++RS  
Sbjct: 63  ACKEIKKYK-NIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKRSEH 121

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A      +    L +++  + V V G R+ +T KEY ++  L    N  LT++  L  +
Sbjct: 122 AAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNIALTRDKLLEEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I  LR  L      + +I T+ G GY   
Sbjct: 182 WGYDFFGDDRTVDTHIKMLRNSLGEY---RKFIVTLRGMGYKFE 222


>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL ++   +TV      I LT +EY ++  L       +T+E  ++ 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 184 VWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 237

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IED++++ + ++  L  E + VY    GE+G+      + D +ILDL L  + G 
Sbjct: 4   IKILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLMLPKMLGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ +R  +   PV +LS      DKV GL+ GADDYI+KPF+  EL+ RI+A++RR  
Sbjct: 64  DVMKEIR-NRSEVPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLRRIE 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L+       G  I+LT  E+ +++ L    N   T++  +
Sbjct: 123 KYNIPRADIIKTLDGRLEMDLEYNRFFKDGVEIYLTKNEFSILKTLFSNPNKIYTRDEII 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +      YI+T++G GY 
Sbjct: 183 EITFGYDYDAYDRAIDTHIKNIRQKIEDNPKKPMYIKTIYGMGYK 227


>gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 222

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  +   +   L+ + +   + + G +G  +     +D +ILD+ L    G 
Sbjct: 1   MKILVIEDDPTVGEFVRRGLEEQRWQTDLCNNGLEGERMALSQPYDLVILDMRLPGRNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR +    PV +L+   +++ KV  L++GADDY++KPF  EEL+AR  A++RR R
Sbjct: 61  DVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEALLRRPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  GDL ++   + V   G  I LT KE+ ++E L       +++ +   + + 
Sbjct: 121 ALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLITEYAWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P   I+DV I  LRKK+ +A   K  I TV G GY++R
Sbjct: 181 YHFDPGTNIVDVVINHLRKKI-DARFDKKLITTVRGVGYMIR 221


>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
           protein [Cyanothece sp. CCY0110]
 gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 246

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD A+   I   L+   +++     G  G  L    + D I+LDL L  + GF 
Sbjct: 3   RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR        PV +LS +   +DKV G  +GADDY++KPF   E++AR+RA++RR+
Sbjct: 63  VCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T++    
Sbjct: 123 DRIPQAAKHSEILNYGPLTLIPERFEAIWFEDTVKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   + ++
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLELPSSEQ 236


>gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
          Length = 246

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/241 (36%), Positives = 138/241 (57%), Gaps = 11/241 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E +   V   G  G++L    +FDAI+LDL L D+ G E
Sbjct: 7   KILIIEDEKNLARFVELELRHEKYETQVEGNGRKGLDLALNEDFDAILLDLMLPDLNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 67  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 125

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q ++   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 126 EKRAMGDTMGVQKVVHFNDLTIETANRIVHRGDSTVDLTKREYNLLMTLIENKNNVVTRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             LN ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE  E 
Sbjct: 186 QLLNKIWGPESKIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRTDENDEAREE 244

Query: 233 L 233
            
Sbjct: 245 A 245


>gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
 gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str.
           Houston-1]
          Length = 222

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   +K+  +       GE+   L     +DA+ILD+GL  + G 
Sbjct: 1   MRILIVEDDRNLNRQLAEAVKNAGYVSDSAFNGEEAYFLGSTESYDAVILDIGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV +L+      DKV G+ +GADDY+ KPF+ EEL+AR+RA++RRS 
Sbjct: 61  CVVEKWRKEGHLMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEELMARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++     V   G  I LT  E++++  L    +  +++     HLYD
Sbjct: 121 GHATSTLCCGKVLLDTKTSRVFFDGQLIKLTSYEFRLLSYLMHHGDRIVSRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   ++VF+ +LRKKL         IET+ G GY +R
Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGMD-----LIETIRGMGYRVR 217


>gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8]
 gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8]
          Length = 233

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +V 
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQVC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R LR    S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR     
Sbjct: 65  RDLRAFS-SAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQLD 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L ++   + V   G  + LT  E++M+  L+ +    LT++  LN +   
Sbjct: 124 EPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 + +DV + KLR+KL +       I+TVWG+GY+    A +
Sbjct: 184 EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLFSPKAHE 229


>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  G+E     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL ++   +TV      I LT +EY ++  L       +T+E  ++ 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 184 VWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
           MS 187-1]
 gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
          Length = 290

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   +DV I +LR K+ +    +  I T+ G GY       +E
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKNNE 262


>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++   ++  L    F V +   GE+G++     ++D I+LD+ L    GF 
Sbjct: 4   RILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKDGFA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + LR   IST + +LS      D+V GL  GADDY++KPF+  E+V++I+AI+RR   
Sbjct: 64  VCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKEV 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    ++ +    + ++     V V G  I  T KEY+++E L   K   +++++ L+ 
Sbjct: 124 LSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+    + + +I+DV I K+R+KL +       I+T+ G GY+L +   D
Sbjct: 184 LWGFEYDGDTRIVDVHIFKIREKLKDYGIK---IKTIRGIGYMLEDEVHD 230


>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
 gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
           chejuensis KCTC 2396]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ A+   I + L+  +++        +   L    + D I+LD  L  + G E
Sbjct: 5   QVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R L+  + +   P+ +L+  +  ++KV+GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 65  FARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRT 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ I    L ++     V  +G  +++   EY++++     +    T+   L+ +
Sbjct: 125 AVQGMETPIEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + G    E + +DV I +LRK L       + ++TV G GY     A 
Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALE--PSHHHLVQTVRGTGYRFSTRAP 230


>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
 gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
           thermophila UNI-1]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++A+   +   L +  + V     G + ++       D +ILDLGL DI G E
Sbjct: 7   RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V+R +R    + P+ ILS     +DKV  L +GADDY++KPF  +EL+ARIR  +R R+ 
Sbjct: 67  VVRRIREWS-NVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRTP 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++    DL V+L  + V VQG+R+ LT  EY +I++L       LT    L  ++ 
Sbjct: 126 DQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E  ++ V I  LR+K+        YI T  G GY LRE+
Sbjct: 186 PAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRLRED 229


>gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 220

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L 
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLE 217


>gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
 gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus
           thuringiensis serovar berliner ATCC 10792]
          Length = 203

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 57/206 (27%), Positives = 104/206 (50%), Gaps = 5/206 (2%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77
           + L +  +     + G++ ++  +   +D ++LD+ + ++ G  V + +R      P+  
Sbjct: 1   MYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVCKEIRKTS-DVPIIF 59

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTGDLSVNL 136
           L+      ++V GL+ GADDYI KPF+  ELVAR+ A++RR ++   Q  I  G + +N 
Sbjct: 60  LTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFGPILINE 119

Query: 137 DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICK 196
            ++ +E  G  I LT KE+ ++  L        ++E  L  ++        + +D  +  
Sbjct: 120 KSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWGYDYAGSTRTVDTHVKT 179

Query: 197 LRKKLSNAAGGKNYIETVWGRGYVLR 222
           +R KL  +    NYI+TVWG GY   
Sbjct: 180 MRLKLGESG---NYIQTVWGVGYKFE 202


>gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 228

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+  A  +   L  E F V      ED  +      +  IILD  L    G 
Sbjct: 1   MRILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                LR  +I TPV +L+   ++ D+VRGL +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  TFCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRRAE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   DL ++  ++ V   G  + LT KEY ++ELL  R    +++      ++ 
Sbjct: 121 QARPAMLSVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWR 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +IDV I  LR+K+ +  G    I TV G G+ L
Sbjct: 181 TGLIALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSL 220


>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 235

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLIEDD ++A  +   L  E +++     GE+G+   K + +D +++DL +  + G E
Sbjct: 4   HILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R    + P+ I+S   S  DK  GL  GADDY++KPF+  E+ ARI++ +RRS  
Sbjct: 64  VIRRIRT-HSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122

Query: 122 HAQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +A+            +  G L ++ D   V    + I LT KE  +++L     N   TK
Sbjct: 123 YARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTK 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 ++      +  +I+V I +LR+K+        +I+T+WG GY   
Sbjct: 183 AQLYGFIWKDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGYKWE 233


>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +S       I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii ATCC 27126]
          Length = 224

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L K Y +D  I+D+G+  + GF
Sbjct: 1   MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A IS P+ IL+     ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ 
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S++  ++ + + G  + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VF+ +LRKKL +  G    IET+ GRGY +
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPTGELKPIETLRGRGYRI 220


>gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894]
          Length = 220

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +G  L +  E+  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R + ++TPV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   D+++NL  + V +QG  + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK  I T+ G GY L 
Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRLE 217


>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 236

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +    ++ GED  +      FD ++LD+ L  I GFEV
Sbjct: 6   LLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  +I    P+ +L+      DK+ G + G DDY+ KPF+  EL  RIRA+++R R
Sbjct: 66  CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +  G L V++   +V + G  + LT  E++++  L  RK    ++EM L+ 
Sbjct: 126 RQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++D       + ID  I +LR+KL  +      I+TV G GY   E   D
Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGESGRQ---IKTVRGLGYKFDEEGDD 232


>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 234

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 14  ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 74  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G + +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 133 VSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 193 FEGNERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 231


>gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
 gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51]
          Length = 220

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G++G+       FD  ILDLGL  + G 
Sbjct: 1   MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGQNGVHALLHETFDLAILDLGLPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  EVLRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    + ++   + V  QG  + LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL         I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVHIYHLRKKL-----NNGLIRTVRGIGYLVEGKA 220


>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
 gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
          Length = 235

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 123/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           +++L+++D+  +   ++  L  E + V     GE  +++  +      +ILD+ +  + G
Sbjct: 14  IKVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDG 73

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E L+ +R      PV +L+  +   D+++G   G D+YI+KPF+ + LVAR+ AI+RR+
Sbjct: 74  WETLKEIRKFS-QVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRT 132

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A +  +  G + ++L A  V + G  + L+ KE+++++   + +   L++E  LN++
Sbjct: 133 SDAASEERLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     + + ID  + KLR K+       +YI+T+WG GY   
Sbjct: 193 WNYDYYGDARTIDTHVKKLRSKMGAKG---DYIKTIWGVGYRFE 233


>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
 gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
           sphaeroides 2.4.1]
 gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
 gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
 gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
           protein [Rhodobacter sphaeroides WS8N]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+SE F V     G++ + L +    D I+LD  L  + G EV
Sbjct: 9   VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R +  S P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R+ +RR+R
Sbjct: 69  CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRAR 128

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 129 PSSVGLTLEFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L    GG++ + TV G GY L
Sbjct: 189 GRDIYVDSRTVDVHVGRLRKAL-CLHGGEDPVRTVRGAGYAL 229


>gi|255034088|ref|YP_003084709.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254946844|gb|ACT91544.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 232

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 133/231 (57%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIED+  +   I+  L +    + +   G+ G+++   ++FD IILDL +  I G 
Sbjct: 1   MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R  R A+++TP+ +L+ + + E+ V GL SGADDY++KPF   EL AR+R ++RR +
Sbjct: 61  EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +  GDL ++   KTV+  G  I LT  E++++E L    N  L +   L 
Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++D        ++DV+I  LRKK+      K  I TV+G GYV+R++ +D
Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIK-LIHTVFGMGYVIRQSYED 230


>gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
 gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Reinekea sp. MED297]
          Length = 225

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+++L   ++   K E F V  +  G++G+ L K  ++DA I+DLGL ++ G 
Sbjct: 1   MRLLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR A    P+ +L+      DKV GL+SGADDY++KPF  +EL+AR++A++RRS 
Sbjct: 61  DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G   ++  AK+V V G  + LT  EY  +E L   KN  ++K     HLY+
Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +I+VFI +LRKKL    G +N I T  G GY    + 
Sbjct: 181 QDYDRDSNVIEVFIRRLRKKLDPD-GERNPILTQRGLGYRFNADV 224


>gi|229589098|ref|YP_002871217.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229360964|emb|CAY47824.1| heavy metal two component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 226

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   G  G  L     +D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGQYLRQGLTEAGFTTELVADGTSGQHLALTGAYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRTAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DL ++L  + VE  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STPQETALQLADLRLDLIRRRVERDGQRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  II+V I +LR K+ +    K  I TV G GYVL E  
Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEERV 225


>gi|220905834|ref|YP_002481145.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219862445|gb|ACL42784.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 253

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 112/233 (48%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILD---------- 51
           +ILL+ED++ +  ++ L L  E + V     G   +++       +  +D          
Sbjct: 20  QILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILD 79

Query: 52  LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           L L  I G ++ R +R    + P+ +LS   S  D+V GL+ GADDY++KPF   ELVAR
Sbjct: 80  LMLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVAR 139

Query: 112 IRAIVRRSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            RA++RR R         +   DL +      V V+G  ++L+ KE++M+EL        
Sbjct: 140 CRALLRRQRAQTPPPVPILKFRDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRV 199

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E  L+ ++      + K +DV I  LR+K+        Y+ TV G GY  
Sbjct: 200 WPREQLLDKIWGTDFVGDSKTVDVHIRWLREKIELDPSHPEYLLTVRGFGYRF 252


>gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  ++  ++  L++ N+ V V +  ED +   K  +   ++LD+ L  + G + 
Sbjct: 5   IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +    S P+ ILS  SS  DKV  L+ GADDY++KPF+  EL +RI++++RRS 
Sbjct: 65  LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRRSY 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   D++++ +   V   G  + LT KEY+++  +   K   +T+E  LN ++ 
Sbjct: 125 KVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E + +D+ +  LR K+ +      YI+T+ G GY L
Sbjct: 185 YDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225


>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   ++    +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  ++    P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAG 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PTDGEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    E + +DV I +LRK L +A      ++TV G GY     A
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDAYEN--LVQTVRGTGYRFSTKA 229


>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 223

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   +   LK E F V++ + G+ GI +CK  + D +ILD+ +  + G E
Sbjct: 3   KILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDGIE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   +R  K   +  +C L+  +    ++ GL +GADDYISKP     L++R+ A++RR 
Sbjct: 63  VCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRRK 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                    T DL +N +   V   G  +HL  KE++++ LL+ R      +++ L  ++
Sbjct: 123 ESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + IDV + KLR+K+ +      YI+TV G GY  R
Sbjct: 183 GTDIIVGDRTIDVHVRKLREKIGDD-----YIQTVKGIGYKFR 220


>gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 222

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+   F V     G       +  ++ A +LDLGL    G 
Sbjct: 1   MRILLAEDDSMLGDGLRAGLRQMGFQVDWVRDGVAAERELRAVDYVAAVLDLGLPGKDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ALR A+ +TPV +L+   ++ D++RGL +GADDY+ KP +  EL AR+R++VRRS 
Sbjct: 61  EVLQALRAARNTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDLHELAARLRSLVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++  G LS++  A+ V      + L+ +E+ ++  L       L++E     +Y 
Sbjct: 121 GVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSAGRVLSREQLEQQMYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E E   I+V I  LR+KL         I+TV G GY+L   A
Sbjct: 181 WGLEVESNTIEVHIHHLRRKLQAD-----VIQTVRGVGYMLNPKA 220


>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 226

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED+  +  +I+  L++E F       G   +     +  D IILD+GL D+ GFE
Sbjct: 4   RIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  + S P+  L+  +   D++ GL+ GADDYI+KPF+  E+ AR++A++RR+  
Sbjct: 64  LCKQIRQLR-SVPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +    TG  +VN   + +   G  + L+  E+ +++    R     +++  +  +++ 
Sbjct: 123 GNKPSPCTGTFAVNESKRQISYLGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEH 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            D    + ID  I  +R KL     GK+ I T  G GY LRE+
Sbjct: 183 PDCSLDRTIDAHIKNIRAKLRTIEPGKDPIVTYRGTGYALRED 225


>gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 223

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A  +   L     +      GE+G++  +  EFD +I+D  +  + G 
Sbjct: 1   MRILIVEDDLEAAGVMVRGLTEAGHDCVSAADGEEGLKAARDGEFDVMIVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV  LS +  + D+V GLQ+GADDY+ KP+   EL+ARI A+ RR  
Sbjct: 61  TLVETLRREGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +L+  G+L ++L A+TV   G  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGSVNTLLRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P+  +IDV I +LR K+         ++TV G GY L
Sbjct: 181 HYHFDPQTNVIDVHISRLRSKIDKGFDRP-MLQTVRGAGYRL 221


>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 227

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   I+  L +E + V     G++ + L +  E   +ILD+ + ++ G+ V
Sbjct: 5   ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + PV +L+  +  +D + G + GADDY++KPF+   L+AR + ++      
Sbjct: 65  CRRIRKTS-NIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    + + +  + V+  ++TV+V G  I+LT  E++++  L   +   +T+E  +  +
Sbjct: 124 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      + + ++  I  LR KL + +     I TV   GY    N 
Sbjct: 184 WGYEFSGDDRTVNSHIRNLRTKLGDKS---KCIITVVRAGYKFEGNV 227


>gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator
           [Geodermatophilus obscurus DSM 43160]
 gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family
           [Geodermatophilus obscurus DSM 43160]
          Length = 220

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ ED+  +A  +E  L++  F   V   G          +FD +ILD+GL  + GFE
Sbjct: 3   RVLIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  +++ PV IL+   S++D V  L+ GADDY+ KPF  EEL+AR+R  +   R 
Sbjct: 63  VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  GDLS++L  +  +     + L+ +E+ + E         L +E  L+H++  
Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +P   ++DV++  LR+KL         IETV G GY L 
Sbjct: 183 DFDPGSNVVDVYVRYLRRKLGAD-----RIETVRGMGYRLV 218


>gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 223

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 137/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLRRLRAQK-QTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL ++L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNAYEKKLIHTIRGMGYVLEDRS 223


>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 239

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR+RA++RR    
Sbjct: 74  TKRI-EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDRA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL  +      I TV G GY     
Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPP 237


>gi|153939612|ref|YP_001390321.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935508|gb|ABS41006.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318412|gb|ADF98789.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 240

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D +ILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R +K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIR-SKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     +  G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGEIIELKPKELALISFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235


>gi|325956445|ref|YP_004291857.1| response regulator [Lactobacillus acidophilus 30SC]
 gi|325333010|gb|ADZ06918.1| Response regulator [Lactobacillus acidophilus 30SC]
          Length = 238

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    
Sbjct: 1   MKILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120

Query: 119 SRGHAQS----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                +            I T  L ++   + V      +  LT KE+ ++  ++ +   
Sbjct: 121 VMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 181 VFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235


>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K + + +E+ LK+E ++V+    GE+ +++ +  E   ++LD+ + D+ GFEV
Sbjct: 5   ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  + + P+ +LS      DK++G+ +GADDY+ KPFN  EL  RIRA+ RR+   
Sbjct: 65  CSKVRE-RYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I    + ++     + +  + + LT +E++++ LL+  +    + E    
Sbjct: 124 NTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  +       + V + +LR KL     G   I TVWG GY + +
Sbjct: 184 KVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230


>gi|116872936|ref|YP_849717.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741814|emb|CAK20938.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 228

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+ ++   IE+    E  +      G+ G E     +FD  I+DL L ++ G 
Sbjct: 1   MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGFETFFKDDFDIAIIDLMLPNMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R +R      P+ IL+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR  
Sbjct: 61  TICRKIREVS-DVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMF 174
              S  + + ++ T    ++   + +  QG  +  LT KE+ ++  L        ++E  
Sbjct: 120 NSSSNENEEDILETNYFKISKRTREIFYQGKLLDALTPKEFDLLYFLMQHPRQVFSREQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++  +   + + +DV I +LR+K++     K ++ TVWG GY   E 
Sbjct: 180 LEQVWGYQFYGDERTVDVHIKRLRQKIATDT--KPFLHTVWGVGYKFDET 227


>gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 257

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 110/247 (44%), Gaps = 15/247 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD A+  S+E  L+ E + V     G   +EL      D  +LD+ +  + G E
Sbjct: 12  RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL------------- 108
             R LR      PV +L+    + D+V GL  GADDY+ KPF  EEL             
Sbjct: 72  ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALSRRSAL 131

Query: 109 -VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      +     + +  G + ++  ++ V   G  + LT  EY+++EL       
Sbjct: 132 AARAGAGRGGAAVSGGPAPLTYGGVVLDQSSRQVTRDGRELTLTKTEYELLELFLTHPRQ 191

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L++ M +  ++     P    ++VF+  LR+KL  A G    + TV G GYVLRE A  
Sbjct: 192 VLSRSMIMERVWGYDFGPSSNSLEVFVSYLRRKLE-AGGEARLLHTVRGVGYVLREQAAA 250

Query: 228 ETCEYLE 234
              E   
Sbjct: 251 PPREPSP 257


>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
          Length = 221

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 61  NGFEVSKMIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  + 
Sbjct: 120 RSYDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221


>gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
 gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP
           105476]
          Length = 222

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   ++   +       GE+   L     +DA+ILD+GL  I G 
Sbjct: 1   MRILIVEDDRNLHHQLAEAVRQAGYVYDSAFDGEEAYFLGSTESYDAVILDIGLPYIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    + PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ 
Sbjct: 61  RVVEKWRQEGHTMPVLMLTARDRWSDKVLGIDAGADDYVVKPFHLEEVMARLRALIRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G++ ++     V V G  I LT  E++++  L    +  +++     HLYD
Sbjct: 121 GHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   ++VF+ +LRKKL         IET+ G GY +R
Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGVD-----LIETIRGMGYRVR 217


>gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  I G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVMLPGIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALREQR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H   S +   DLS++L ++ V   G R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +++V I +LR KL +       + T+ G GYVL   A  E 
Sbjct: 180 DINFDTDTNVVEVAIKRLRAKL-DGPFENKLLHTIRGMGYVLENRALAEP 228


>gi|313498604|gb|ADR59970.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 279

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 230 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272


>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      +   L+   + V +   G DG+ +    ++D ++LD+ L  + G+
Sbjct: 1   MAILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+ ALR +K   PV  L+    ++D++RGLQ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QVMSALR-SKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL ++     V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 TREAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +A   K  I TV   GY+  E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKI-DAPFDKKLIHTVRSVGYMFSEEP 223


>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 229

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +E+ L++E F+      G   +   +       +LD  +  I G +V
Sbjct: 8   ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++    ++D+V  L++GADD+ISKPFN  E++AR++A++RRS   
Sbjct: 68  CRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRSTAI 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   +  GDL +N   +     G  + LT +E+ ++E         L++   + +++   
Sbjct: 128 SPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVWGED 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  ++DV++  LR+KL         I+T+ G G+ LR +
Sbjct: 188 YFGDDNVVDVYVRYLRRKLEEV-KPDRIIQTIRGIGFALRVD 228


>gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1]
 gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1]
          Length = 228

 Score =  262 bits (670), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L    + V V   G DG+ L     +D ++LD  L  I G 
Sbjct: 1   MKLLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L ALR +K  TPV +L+    ++D+VRGLQ GADDY++KPF   EL ARI+ ++RR+ 
Sbjct: 61  ALLAALRRSK-HTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAA 119

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +L+   DL V+L  +     G R+ LT KE+ ++ LL  R+   L++     
Sbjct: 120 PSQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAA 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   + E  +++V I +LR K  +A   +  + TV G GYVL E
Sbjct: 180 QVWDMNYDSETNVVEVAIRRLRNKF-DAPFEQVLLHTVRGMGYVLEE 225


>gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33]
 gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33]
 gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33]
          Length = 225

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L AK+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|89076062|ref|ZP_01162422.1| osmolarity response regulator [Photobacterium sp. SKA34]
 gi|89048214|gb|EAR53796.1| osmolarity response regulator [Photobacterium sp. SKA34]
          Length = 239

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V     GE    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDMRLRALLERYLFEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQTI 125

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         +I  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSVDSKMIEFGEFRLNLGTREMFRGDVPMPLTSGEFAVLKALVTNAREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +        YI+TVWG GYV   + ++
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGRE 238


>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +LL+ED+  +  ++++ LKS+N+ V   + G++G+E  K  +    I+D+ +  + 
Sbjct: 1   MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIMMPVMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +   LR      PV  L+  +   DK+ GL  GADDYI+KPF   EL+AR+ + +RR
Sbjct: 61  GLTMTMKLREVS-DIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRR 119

Query: 119 SR---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          + ++ G L ++ + K V V G  + LT KE+Q++ELL        
Sbjct: 120 YEQILNLKGNIQKPNNQLIVGGLVLDQETKEVFVNGRSVRLTKKEFQILELLMSYPGKVY 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + E     +++       + I V + +LR+K+        Y++ VWG GY + +
Sbjct: 180 SAEEIYESIWEET-AINTETIMVHVRRLREKIEANPKHPEYLKAVWGVGYKIEK 232


>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 224

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 139/224 (62%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L K Y++D  I+D+G+  + GF
Sbjct: 1   MRILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A IS P+ IL+     ++KV GL +GADDY++KPF+ EEL+AR +A++RR+ 
Sbjct: 61  EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S++  ++ + + G  + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+VF+ +LRKKL + AG    IET+ GRGY +  N
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPAGDLKPIETLRGRGYRINRN 223


>gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MRIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    
Sbjct: 1   MRILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNT 167
                        + +  I T  L ++ D + V       + LT KE+ ++  ++ +   
Sbjct: 121 VMMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++  L+ ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 181 VFSRDQLLDLVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235


>gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 231

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 90/232 (38%), Positives = 140/232 (60%), Gaps = 5/232 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V  +G  + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----ENAKDE 228
              + +  +I+VFI +LRKKL       N IET+ G+GY LR    E   DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLRVITPEQGVDE 231


>gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
 gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM
           16795]
          Length = 236

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 5/235 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL++EDD  +A +++  ++ E FN+ + +  E+  ++    E+D I+LD+ L D  G
Sbjct: 1   MKNILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVMLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +E L+ LR     TPV  L+      + V GL  G DDYI+KPF   EL++RI AI+RR 
Sbjct: 61  YEFLKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRK 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   + ++   ++S++     V      I LT  EY+++ +L   KN  L++   L 
Sbjct: 121 GKSQDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILE 180

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L+D   D      + V+I +LR+K+ + +    YI TV G GY    +  +E  
Sbjct: 181 KLWDVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGYKWNGSDDNENT 235


>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
           bingchenggensis BCW-1]
          Length = 249

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +E  L    + V     G D +   + +  D ++LD+ L D+ GFE
Sbjct: 12  RILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR   + TPV  L+  + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+  
Sbjct: 72  VTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTGH 131

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++   DL ++  A  V   G  I L+  E++++  L    N  L+K  
Sbjct: 132 DVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKSQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + +I++ ++  LR+K+         I T  G GY LR
Sbjct: 192 ILDRVWGYDFSGDGRIVETYVRYLRRKI--DHLDPPLIHTQRGVGYCLR 238


>gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 224

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   ++T + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLTRLRKT-VNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 234

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 22/240 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED   +A+ I+  L+ E+F   +   G   +EL K  + D IILDL L  + G 
Sbjct: 1   MNILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGL 60

Query: 61  EVLRALRVAKISTP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV   +R    +    + +L+      D+V GL +GADDY+ KPF+  ELVAR+RA++RR
Sbjct: 61  EVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120

Query: 119 S---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKE-----------YQMIELLSLR 164
           S    G  +++  T    V+LD      +   +     E           + ++      
Sbjct: 121 SLRHGGQPKNVYQTAHFIVDLDRHIATRK---LD---NESEETLELTTLEFSLLSTFMSY 174

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                ++   +  L+      + +++D  I +LRKK+        +I+TV G GY   +N
Sbjct: 175 PGRVWSRSQLIEKLWGDDFFGDERVVDTHIRRLRKKIEPDTANPTFIKTVVGIGYKFEDN 234


>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  261 bits (669), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E ++V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 117/228 (51%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    + V     G DG+       +D I+LD+ L  + G+
Sbjct: 1   MKLLIVEDEVKAGEYLQKGLVESGYVVDWVRDGVDGLYHATSEPYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    IED+VRG + GA+DY+ KP+   EL+ARI+ + R   
Sbjct: 61  QVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHT 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  I LT KEY ++ELL  ++   L++    +
Sbjct: 121 SSRVQTSSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV I +LR K+ +       I T+ G GY L   
Sbjct: 181 LVWDMNFDSDTNVIDVAIKRLRNKV-DKPFETPLIHTIRGMGYKLEAP 227


>gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
 gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS,
           regulation of copper resistance [Cupriavidus taiwanensis
           LMG 19424]
          Length = 241

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 3/235 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  +     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR  +   PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 AQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYL 233
           D   + +  +IDV I +LR K+ +       I+TV G GYVL    A DE    L
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDGFDARLIQTVRGMGYVLEAPEAADEAGAPL 234


>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 227

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA ++   L  E   V +   G  G+EL     FD I+LD+ L D+ GF
Sbjct: 1   MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR    + P+ +++    I D++RGL+ GADDY++KPF  EEL+AR+ AI RR  
Sbjct: 61  EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  GDL  +    T+   G  + LT KE  ++ LL     T +++   
Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++   D+P   I++V++ +LR+KL   A G   +E V G GY L
Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKL--HALGPPVVENVRGFGYRL 225


>gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 243

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54
           RILL+ED++     + L L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 9   RILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML 68

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV   +R +  S PV +L+   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 69  PRLDGTEVCTRIRRSS-SVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127

Query: 115 IVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR      + ++V G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 128 VLRRSRDTGPELEPVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTR 187

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  L+      + K +DV + +LR ++   A     I TV G GY L
Sbjct: 188 SQIIERLWGPEYGGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRL 237


>gi|259908032|ref|YP_002648388.1| DNA-binding transcriptional regulator BaeR [Erwinia pyrifoliae
           Ep1/96]
 gi|224963654|emb|CAX55151.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283477929|emb|CAY73845.1| probable transcriptional regulator ycf27 [Erwinia pyrifoliae DSM
           12163]
 gi|310768055|gb|ADP13005.1| DNA-binding transcriptional regulator BaeR [Erwinia sp. Ejp617]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++  +    G++ ++  K +  D ++LDL L  + G  V
Sbjct: 10  ILIVEDEPKLGQLMIDYLQAAHYRTHHLLRGDEVVDWVKHHTPDLVLLDLMLPGMNGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++      D++ GL+ GADDYI KPF+  E+VAR++ I+RR R  
Sbjct: 70  CRELRRFS-ELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILRRCRRE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +    L ++            + LT  E+++++ L+ +     ++E  LNHLYD  
Sbjct: 129 TDEALNISPLLIDEKRFQASWDDKPLDLTPAEFRLLKTLAQQPGKVFSREHLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL +    + +I  V+G GY    + 
Sbjct: 189 RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEADG 231


>gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR  +I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +    +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRSKIDRGFEHP-MIHTVRGAGYVIRPDEPQAS 232


>gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae]
 gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989]
 gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 5   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 65  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 125 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +  +IDV + +LR K+ +       I TV G GYVL 
Sbjct: 185 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 224


>gi|86146208|ref|ZP_01064533.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
 gi|85835919|gb|EAQ54052.1| probable two-component system response regulator (Pho family
           protein) [Vibrio sp. MED222]
          Length = 224

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V     G DG+      E+D IILD+ L    GF
Sbjct: 1   MKILLIEDDIHIARFLVNGFQQEGITVTHATDGVDGLHEAVTEEYDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + +VRR +
Sbjct: 61  EVLAELRGQGYATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLVRRGK 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++L   T++     I +  +E+ +++LL   +   ++K   L H+
Sbjct: 121 QPTTQPLELHYGPLSLDLLKHTLQRDQQTITINQREFMLMKLLLENREAVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFSKP-LIHTLRGVGYVLK 223


>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 271

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 45  ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 104

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 105 TLKIREES-SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 163

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                ++ S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 164 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 223

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 224 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 271


>gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
 gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis
           z3032]
          Length = 231

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 8   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 68  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 128 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +  +IDV + +LR K+ +       I TV G GYVL 
Sbjct: 188 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 227


>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
 gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Cryptobacterium
           curtum DSM 15641]
          Length = 226

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  LA ++  +LK+ ++ V V   G+ G+   +   +D  +LD+ L    GF
Sbjct: 1   MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR    + P+ +L+    I DKV GL +GADDY++KPF   EL+ARIR++ RR+ 
Sbjct: 61  SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D++++LDA  +E +G RI L+ KE+ ++ +L  + +   +K+  ++ ++ 
Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    ++ ++  LRKKL    G    I T+ G+GY L   A
Sbjct: 181 YDSTAADNNVEAYVSFLRKKL-AFIGATTCIVTLRGQGYRLGTQA 224


>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 225

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + +E    +  D +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRRES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +LS   N   ++E  +++
Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILSRNPNRIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans]
 gi|133739009|emb|CAL62057.1| Transcriptional regulatory protein OmpR [Herminiimonas
           arsenicoxydans]
          Length = 255

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 8/216 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L  + FNV   +  +   +L     +D ++LDL L    G  + R LR A   TP+ +L
Sbjct: 38  YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 97

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTG 130
           +      D++ GL+ GADDYI+KPFN  ELVARI A++RR        +          G
Sbjct: 98  TAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFG 157

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           + +++L  +T++     + LT  E+ ++++ +      L++E  +        E   + +
Sbjct: 158 EFTLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRSL 217

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DV I +LRK +        YI+TVWG GYV     K
Sbjct: 218 DVQISRLRKLIEPDPSTPLYIQTVWGLGYVFIPEGK 253


>gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX]
 gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX]
          Length = 219

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L +  F   V D     I+      FD ++LDLGL D  GF 
Sbjct: 3   RILIVEDEDRIASFVRKGLNANGFTSTVVDRAGAAIDYALTGNFDLMVLDLGLPDADGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      P+ IL+   S+ D V GL++GADDY++KPF  EEL+ARIR  +R +  
Sbjct: 63  VLRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLARIRLRMRSAHN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  GDL+++L  +        + LT +E+ ++EL        L+++  L+H++  
Sbjct: 123 AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DVFI  LRKK+     G + IET+ G GY L
Sbjct: 183 DYDPGSNVVDVFIRALRKKI-----GAHRIETLRGMGYRL 217


>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +    G    ++  G L +N D+  V  V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227


>gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 234

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 13  MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDEDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   +++D+V GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 73  HFLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++  +L++N+  + V + G  I LT KEY ++  L L+  + + +E+  N +Y 
Sbjct: 133 NQGESELIVSNLTLNIGRRQVWMDGQEIILTPKEYALLSRLMLKAGSPVHREILYNDIYS 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 193 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 233


>gi|170755642|ref|YP_001780597.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120854|gb|ACA44690.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 240

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D +ILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKTEPDIVILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R +K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIR-SKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     +  G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGELIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235


>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
 gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
 gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
          Length = 225

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA  ++ +L+   F+V   + G D ++     ++D I+LD+ +    G 
Sbjct: 1   MRILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R    + PV +L+  S IED+V GL++GADDY+ KPF   E +AR++A+ RR+ 
Sbjct: 61  EVLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKALARRNA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A +++  G++ ++ +   +  +   + L  KEYQ++EL     +   + +  ++ ++ 
Sbjct: 121 GYADTVLSLGNVRLDCNRYELSCKEETVRLNNKEYQLMELFFQHPHFVFSTDHLMDKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E ++ ++  +I  +RKKL +       I+TV G GY L  N
Sbjct: 181 KDSEADIDVVWTYIGFIRKKLKHIGADIE-IKTVRGAGYSLEGN 223


>gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 223

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A ++   LK   ++V     GE G+   +   +D +++D  +  + G 
Sbjct: 1   MRILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            V+  LR     TPV  LS +  + D+V GL++GADDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  TVVETLRREGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +  G+L +NL  +TV  QG  I L  +E+Q++E +      ++T+ M L  ++
Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +P+  +IDV I +LR K+ +    +  ++TV G GY L  
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLDP 223


>gi|49474036|ref|YP_032078.1| two-component response regulator [Bartonella quintana str.
           Toulouse]
 gi|49239540|emb|CAF25897.1| Two-component response regulator [Bartonella quintana str.
           Toulouse]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +E        +V V   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDKNIVLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+         + TV G GY+L+  
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAP 224


>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
 gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++    I D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-NTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338]
 gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ E  +  V + G +G+ L    +  F  +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCALMKKCIEQEEMSALVANGGTEGLRLIDENKNLFSLVILDVMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R    + PV +L+  S  +DKV GL+ GADDY++KPF+ +EL+AR+ +++RR  
Sbjct: 64  QVLEKIRETS-NIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYT 122

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I    + ++   +TV V    + LT KE+ ++  L+  K    TK+   
Sbjct: 123 TLNPTFAEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +   I  FI KLRKK+        YI T+ G GY   + A
Sbjct: 183 TQVWKDDYAFDDNNIMSFISKLRKKIEADPEHPFYILTIRGVGYRFNKEA 232


>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I++ +DD+ +   +   LK   + V     GE  I+  +    D +ILD+ +  + GF
Sbjct: 1   MKIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R    S  V IL+     +D+VRGL+ GADDY+ KPF+  +L+ARI+A++RR+ 
Sbjct: 61  EVCRQMRNETNSM-VLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRRAG 119

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S +  G ++++     V   G ++ LT  E +++ LL       LT +M + 
Sbjct: 120 NVRGVAGTSTVTVGPITLDAMRHEVTRDGVKVRLTPTESRLLHLLITNTGQVLTTDMIIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            ++   +  +  ++   I  LR+K+  +     +I TV G GY        E 
Sbjct: 180 RVWGYDETGDSGLVKTHIRHLRQKVEPSPNSPRFIMTVPGVGYTFTAPVAIEP 232


>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
 gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
           27725]
          Length = 220

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  + + ++L L  E ++V   + GE  I+L     FD +ILD+ L    G+ 
Sbjct: 3   KILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR ++    S PV ILS     ED++ G + G D+YI+KPFN + L+ARI+ +++ +  
Sbjct: 63  VLREIK-KYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNTSN 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +   +I  G +++N  + TV V+G  + L  KEY+++  L       L+++  L  ++  
Sbjct: 122 NTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + ID  I  LRKKL +       I+TV G GY   
Sbjct: 182 DFPGSDRTIDTHIKNLRKKLGD-----ECIKTVRGIGYKFE 217


>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 256

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   + + L+ E + ++    G+  +   +    DA++LD+ L D+ G  
Sbjct: 32  RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGLS 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   S+E++V GL +G DDY++KPF  EE+VAR+R ++RRS  
Sbjct: 92  VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGA 151

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A SL+V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 152 ADRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 211

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         +++++I  LRKK+   AG +  I T  G GY+++ 
Sbjct: 212 WSYDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMIKP 254


>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
          Length = 243

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 121/233 (51%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++D+ ++   +   L    F V     G + IE+ +  + D I+LD+ L DI GF V
Sbjct: 9   IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R   I  PV  L+     +DK+ GL  G DDY++KPF+ EE+VARIRAI+RR+R  
Sbjct: 69  TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTREQ 128

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I   DL +N D+  V   G  I L+  EY+ +  L   +   L+K   L+H++ 
Sbjct: 129 VEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHVWQ 188

Query: 181 GRDEPEVKIIDVFICKLRKK---LSNAAGG------KNYIETVWGRGYVLREN 224
                +  I++ +I  LRKK   +    G          IET  G GY++RE 
Sbjct: 189 YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMIREP 241


>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
           [Saccharophagus degradans 2-40]
          Length = 234

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   + + L+   + V      +    L    + D I+LD  L    G E+
Sbjct: 6   ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +++   P+ +L+     ++KV+GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++  +  V +    + +   EY+++E     +    T+   L+H++
Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK LS   G   +I+TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALS-LEGHDRFIQTVRGAGYRF 226


>gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 226

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+  A  +   L    F   +   GE   +     +FD +I+D  L  + G 
Sbjct: 1   MRVLIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++  LR    +TPV ILS + +++D+V+GL+SG DDY+ KP++  ELVAR+ A+ RR  
Sbjct: 61  TLVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGP 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A +    GDL ++  +  V   G  I L  +EY+++E L       +T+ M L +++
Sbjct: 121 TERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+ +   GK  +ETV G GY++R+ 
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKGQGKPLLETVRGAGYMIRDE 224


>gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
 gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional
           regulator [Acinetobacter baumannii AB058]
 gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB307-0294]
          Length = 223

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYEPKLIHTIRGLGYKI 219


>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
 gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
          Length = 227

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++   + L L+     V   + GEDG+ L   +  + ++LDL L  I G +
Sbjct: 3   RVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGINGVQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R +    P+ +L+      D V GL++GADDYI KP   E + AR++A++RR   
Sbjct: 63  VCRRIRESS-QVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLST 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    +   G+L+++    TV  +G R+ L   E +++  LS       +++  L ++
Sbjct: 122 PAGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D     + +++D  + +LR K+ N AG   YI+TV G GY  
Sbjct: 182 WDHSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGYRF 224


>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
 gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
          Length = 223

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E ++V V D G+ G EL     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  SICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRFP 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     +  GDL ++ + +    QG  + L+ KE +++       +  LT +     
Sbjct: 121 SLEGTGTGRLKIGDLELDPENQVAYRQGRMVSLSDKEVKLLTYFMQHPHQLLTHKQIYQF 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L++  ++P   ++   I  LR+K+         I TV+G+GY   E
Sbjct: 181 LWEEPEKPNSNVLAALIRLLRRKIEE---ESPLIHTVYGKGYRFGE 223


>gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae L20]
 gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   ++L L  +NF V     G+ G E     E+DA++LDL L  + G 
Sbjct: 1   MRILLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYDAVVLDLTLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R   +  PV IL+   ++++++ G  SGADDY+ KPF   E+V R++A++RR  
Sbjct: 61  AILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  GDL+++     V +    I+LT KE+Q++ L +  K+  LT+      LY 
Sbjct: 121 KQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     ++V+I  LRKKL     GK +I+TV G GY +
Sbjct: 181 WDNDVSSNAMEVYIHNLRKKL-----GKEWIKTVHGIGYKI 216


>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
 gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   ++L L+S  + V + D   D I        D  I D+ L  + G  
Sbjct: 4   RIYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVMLPQMDGIT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS   S  DK+ GL SG+DDY++KPF   EL AR+R ++RR + 
Sbjct: 64  AVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQP 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++S I T  LS++     V+     I LT KEYQ++  L   K   + ++  LN+++  
Sbjct: 124 KSKS-IQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +DV I  LRKKL +   G+ YI+TV   GY   E
Sbjct: 183 DFIGESRALDVHIRSLRKKLDDN--GEKYIKTVRSVGYRFVE 222


>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
           [Erwinia sp. Ejp617]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++        +  + L      D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +ELVARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    L+++  +  V      + +   EY+++           ++E  LNH+
Sbjct: 124 SPLAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALELN-GHDRMVQTVRGTGYRF 225


>gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 217

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 119/220 (54%), Gaps = 9/220 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   ++  L+           G   ++  +   +D IILD+ L  + GFEV
Sbjct: 4   ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +         TP   LS  +S+ D+++G   GADDY++KPF   EL+AR+ A++RR++  
Sbjct: 64  IEQ----ANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRT 119

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A S    G++ ++  +  V   G  +  T KEY+++E+L   +N  L++E  L  ++   
Sbjct: 120 A-SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E + + +DV I KLRKKL      ++ I+TV+  GY L 
Sbjct: 179 FEGDTRTVDVHIQKLRKKLE----WEDRIKTVYKLGYRLE 214


>gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 226

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD   A  +   L+    +V     G DG+ L    E+DA+I+D  L  + G 
Sbjct: 1   MKLLLVEDDVQAATYLAKGLEESGHSVDRAANGTDGLHLAMTGEYDALIVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ A R A  +TPV ILS    ++D+V GL++G DDY++KP+   EL+ARI A+ RR +
Sbjct: 61  GLIAAYRAAGRATPVLILSARGEVDDRVTGLKAGGDDYLTKPYAFSELLARIEALTRRMQ 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +   DL ++     V  +   I L  +E+++++ L       +T+ M L  ++
Sbjct: 121 TRDSSDTLAVADLVLDRVRHKVMRRDQPILLQPREFRLLDYLMRHAGQVVTRTMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P+  +IDV I +LR K+         + TV G GYVL +
Sbjct: 181 GYHFDPQTNVIDVHISRLRSKIDRDFDTP-LLHTVRGAGYVLSD 223


>gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM
           15897]
          Length = 234

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +I+L++D+  +   ++  L  E + N+   D G   I  CK    D I+LD+ L DI G+
Sbjct: 5   KIMLVDDEPDILDLLDKALTIEGYCNITKIDNGLSAINTCKEINPDIIVLDVMLPDIDGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  LS  +   DK+ GL  G DDY++KPF+ +E+  R++A +RR+ 
Sbjct: 65  EVCKKIREIS-HCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAE 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  G+L ++ D   V      I LT +E+++++ L+      +++E    
Sbjct: 124 YKYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          I V I  LR+KL +      YI T+ G GY L 
Sbjct: 184 TVWGEDSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKLV 229


>gi|170760124|ref|YP_001787315.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|237795352|ref|YP_002862904.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|169407113|gb|ACA55524.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229262869|gb|ACQ53902.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 233

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S EN N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R  K + P+ +LS  +   DK+ GL  GADDY++KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRE-KNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQL 119

Query: 117 RRSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTADVDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 264

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  +  + + E +       G D +     +  D ++LDL L D  GF 
Sbjct: 39  RLLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLMLPDFDGFT 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV  L+   +  D++ GL  G DDY+ KPF+ EEL+AR+RA++RR+  
Sbjct: 99  VLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTSE 158

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  GDL+++ +   V   G    LT  EY+++  L       LTK   L+H+
Sbjct: 159 KPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDHV 218

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        ++++ I +LR+KL   A  +  I TV G GY +R+  +
Sbjct: 219 WEYDFGGRSNVVELAISRLRRKL--DAEAEPLIHTVRGVGYSVRQAGR 264


>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 221

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
 gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius sp. TM1035]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L+++ F+V     GE+ + +      D I+LD  + ++ G EV
Sbjct: 8   VLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R      P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 68  CRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALCQH-GGDDPLRTVRGAGYAL 228


>gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 225

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD   A  +   L+     V     GE+G+       FD +I+D  L    G 
Sbjct: 1   MRILVIEDDLEAAAYVVKGLRESGHIVDHAADGEEGLTFALSSTFDVMIVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV  LS +  ++D+++GL++G DDY++KP+   EL+ARI  +VRR+ 
Sbjct: 61  SVVETLREECVRTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRAN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G L ++L A+ V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 PDQVRTRLQVGSLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+         + TV G GY LR
Sbjct: 181 EYHFDPQTNVIDVHISRLRAKIDKNFEQP-LLHTVRGAGYSLR 222


>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 129/227 (56%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 67

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 68  NGFEVSKMIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 126

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  + 
Sbjct: 127 RSYDKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 187 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 228


>gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016]
 gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 243

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   I+  L++  + VYV   G D + L      D IILDL L DI G +
Sbjct: 17  KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+G +  ED + GL  GADDY++KPF+  +LVAR++A++RR+  
Sbjct: 77  ICEMLRKRS-KVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 135

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL +N     V+  G+ ++LT  EY ++  +        T+E  + 
Sbjct: 136 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  +   + ID  I  LR K+ +      YI T+ G GY  
Sbjct: 196 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 240


>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 261

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  +I + LK+E   V     G + + + +  E   II+D+ +  + G + 
Sbjct: 9   VLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIMMPRMDGIKA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R +K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 69  TFKIRESK-KIPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYIRF 127

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++ IV   L++N DAKT  V G  + LT  EY++++LL   K    + E     
Sbjct: 128 GNYKENKNAIVVRGLTLNKDAKTAMVDGKEVSLTLTEYKILKLLMENKGRVFSIEHIYES 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++          + V I ++R+K+        Y++ VWG GY + + 
Sbjct: 188 VWQEPFYNGENTVAVHIRRIREKIEINPREPEYLKVVWGIGYKIEKQ 234


>gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7]
 gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7]
          Length = 236

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 120/233 (51%), Gaps = 13/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+    I+D+ +  + G E+
Sbjct: 6   ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVMDGIEM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+  LS  S   DK+ GL  G DDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMKIRE-NYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKY 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A +  V G L ++LD K V V G  + +T  E +++ELL  +     + 
Sbjct: 125 LNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFSS 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E    +++        + + V +  LR+K+        Y++ VWG GY + + 
Sbjct: 185 EQIYENVW-HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEKQ 236


>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 227

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  + H +   +++  F V+    G + + + K      I+LDL +    GFEV
Sbjct: 6   VLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMIPGADGFEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+    +   PV +L+      D++ GL+ GADDY+ KPF+  EL+ RIRA++RRS 
Sbjct: 66  CRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRRSP 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S+     L ++ DA  V + G  +  T  E++++  L   +    +++  L+ +
Sbjct: 126 PDGAQGSVWQLEGLRIDFDAHKVLIDGEDVLFTATEFKLLVELIRSRGKVKSRDYLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E   + +D  + +LR+KL   A   + +ETV G GY  R+
Sbjct: 186 WGYHFEGYARTVDTHVRRLRQKLGPYA---DRVETVRGIGYRFRD 227


>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
 gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
           [Coriobacterium glomerans PW2]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   + + L++E + V +   G D        EFD  +LD+ L DI GFE
Sbjct: 4   HILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPDIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR +R  + + PV +L+   +  DK+ GL  GADDY+ KPF   ELVAR++A +RR   
Sbjct: 64  LLRTIRADR-TYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRRYTS 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G    +I    L +N  A++V V   ++  T  EY ++  L+  +   +  E  
Sbjct: 123 YGTRDSGEESPIISVNGLVINRAARSVTVDEKQVRCTPLEYSILLYLAEHRGRVVPVEDL 182

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++D +        + V I  LR+K+ + A    +I+ +WG GY + +
Sbjct: 183 FRAVWDEKFLSSSNNTVMVHIRHLREKIGDDAQNPRFIKNIWGVGYTIED 232


>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 225

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 5   ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 65  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 124 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV + +LR+K        + I+T+ G GY L 
Sbjct: 184 FEGNERTLDVHMNRLREKFQEEKSRFS-IKTIRGLGYRLE 222


>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 126/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +++E + V     G++ +   K     D ++LD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R   +  P+ +LS  ++  DK++GL +GADDY++KPFN  E++ARI++++RRS
Sbjct: 61  IQVVKEVRKE-LQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRS 119

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + +  G L +  ++  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 NYATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++        K + V +  LR K+  A GG+  I+TVWG GY + +
Sbjct: 180 FERVWQQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKIGD 228


>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 257

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 15/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL    + D ++LD+ +  + GF V
Sbjct: 15  LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDGFAV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+  LS + +I +KV GL  GADDY+SKPF+ +EL ARI  I+ R  G 
Sbjct: 75  CRRLRAES-AVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVGR 133

Query: 123 AQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             +            ++  GDL V+ + + V   G RI LT  E+ ++ELL       + 
Sbjct: 134 GTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVVP 193

Query: 171 KEMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 194 RAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244


>gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1]
          Length = 225

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+LIEDD  L  ++   + +E   V      +   +  +   +D ++LDL L D  G 
Sbjct: 1   MRIILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESASYDLVLLDLMLPDGQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR    STPV IL+ +  I D+++GL +GADDY++KPF+  EL AR+ A+ RR  
Sbjct: 61  SFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   LI  G L ++L  K+V   G  + LT +E+ ++E        TL+K     HLY 
Sbjct: 121 GNPNPLIEIGGLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V + +LRKKL +A      IETV G GY L
Sbjct: 181 FDTEVESNTMEVHVSRLRKKLGHA-----IIETVRGIGYRL 216


>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +K  TP+ +++   S+ D++ GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +S       I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 88/227 (38%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+K LA  +EL LK E +   +   G  G+E  +   +D I+LDL L +I G E
Sbjct: 8   RILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR      P+ I++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 68  VCRRLRPTS-DVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DLSV  + + V      I LT +EY+++ +L    N  L +   L
Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++    E E  ++DV+I  LR K+ +  G   YI+TV G GYV+R
Sbjct: 187 NKVWGYTTEVETNVVDVYIRYLRNKI-DVDGQPGYIQTVRGTGYVMR 232


>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 224

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   +   L  ++FNV+    GE+G+ +    + D +ILD+ +  + 
Sbjct: 1   MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPVMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L  LR    + PV +L+  S  +DK++G   GADDYI+KPF+ + L+A+++A+++R
Sbjct: 61  GMTMLEKLREVS-TVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           SR     S      L++N  +  V V G  I L+ KEY+++  L   +   L+++  L++
Sbjct: 120 SREDIDSSSQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  + +LR+KL + +   N I TV G GY   
Sbjct: 180 VWGLDYYGDIRTVDTNVKRLREKLLDRS---NLIVTVRGSGYKFE 221


>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
 gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
          Length = 221

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ ED+K +   I   +K    +    D G D + + K    D  ILD+ +  + GF V
Sbjct: 4   VLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPHLDGFSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            +  R    + P+  L+     +DK++G   GADDY++KPF+ + L+A++ A++RRS   
Sbjct: 64  CKIAREM-YNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRRSSSE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +    +  G+L++   + +V V G  + LT KE++++      KN   ++E  LN ++  
Sbjct: 123 NTPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +D  I  LR+KL        YI T+   GY   
Sbjct: 183 DFEGNTRTVDTHIKTLRQKLG---AEGRYIVTLIRSGYKFE 220


>gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 243

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L++ N+++ +   GE G+     + +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  ++S P+ +L+   S +DKV GL +GADDY++KPF+ EEL+AR++A++RR+ 
Sbjct: 61  SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A SL+  G  SVNL +  V+     ++L+  EY++ E L L      +K +   H+YD
Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +I+VFI +LRKKL         IET+ G+GY L  
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYQLIETLRGQGYRLNP 222


>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 234

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD  LA  +   L    F V     G+ G+   +    D +ILDL L D+ G EV
Sbjct: 5   LLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLMLPDMDGLEV 64

Query: 63  LRALRVAK---ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R +R         PV +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++RR 
Sbjct: 65  CRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLRRH 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A   Q+ +  G L ++ DA++V V G    LT  ++ ++  L+ R    LT++  + 
Sbjct: 125 VEGAHPVQTQLRFGTLEIDRDARSVSVAGQLCDLTSYQFDLLVALAERAGRVLTRDQIME 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     +   + IDV + ++R  +   A     I TV G GYV 
Sbjct: 185 AVRGRELDAFDRSIDVHMGRIRAAIELDAKDPKRILTVRGVGYVF 229


>gi|332686662|ref|YP_004456436.1| DNA-binding response regulator [Melissococcus plutonius ATCC 35311]
 gi|332370671|dbj|BAK21627.1| DNA-binding response regulator [Melissococcus plutonius ATCC 35311]
          Length = 240

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 122/239 (51%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M +L+IED++++   +++   +E + +     G+ G+E        +D ++LDL L  I 
Sbjct: 1   MNVLMIEDNESVVEMMQMFFLNEGWELAFQYDGKAGLEAFLENPKKWDMVLLDLNLPTID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMTVCREIRKVSNTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSLIVTGDLSVNLD-----------AKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
              + Q +    D + + D            +   +    I  LT KE+ ++  L+ +  
Sbjct: 121 FEVNNQMIEKKDDSTEDFDVVTEHFKLSTKTREAYLNNQLIEGLTPKEFDLLYTLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY L ++ 
Sbjct: 181 QVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQIIQTVWGVGYKLDDSG 237


>gi|327183273|gb|AEA31720.1| response regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/237 (27%), Positives = 117/237 (49%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+IL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    
Sbjct: 1   MKILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR
Sbjct: 61  GIQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRR 120

Query: 119 SRGHAQS----------LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNT 167
                +            I T  L ++   + V       I LT KE+ ++  ++ +   
Sbjct: 121 VMMEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVIDLTPKEFDLLYTMAQKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 181 VFSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 235


>gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged
           helix family [Variovorax paradoxus EPS]
 gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator,
           winged helix family [Variovorax paradoxus EPS]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+   A  +   L  +   V     G DG  L   +++D I+LD+ L    GF
Sbjct: 1   MKILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVMLPGQDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED+++GL  GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  AVLRALRAVK-QTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L ++L A+       RI LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 KQEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +++V I +LR K+ +A      + T+ G GYV+ 
Sbjct: 180 MNFDSNTNVVEVAIKRLRDKI-DAPFSPKLLHTIRGMGYVME 220


>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
           processes YvrG [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
 gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
 gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
           processes [YvrG] [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis BSn5]
          Length = 237

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   I+ +L+ E + N+      E+ I + K  + D I+LD+ +  + GFE
Sbjct: 6   ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 66  ACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 124

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++           + +     + V G  +  + +  Q+++      N  L+K+     
Sbjct: 125 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I KLR+K+        YI TV G GY    N +
Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 233


>gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54]
          Length = 233

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 115/227 (50%), Gaps = 3/227 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+EDD  L+  I   L+   FNV     G+  +E  + ++    ILDL L    G +V 
Sbjct: 5   LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFRRHDPAITILDLMLPGRDGLQVC 64

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R LR    S P+ +L+      D++ GL+SGADDY+ KP     L+ARIRA++RR     
Sbjct: 65  RDLRAFS-SAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQLE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L ++   + V   G  + LT  E++M+  L+ +    LT++  LN +   
Sbjct: 124 EPPERLEFGPLVIDRRTRAVVHGGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRGI 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 + +DV + KLR+KL +       I+TVWG+GY+    A ++
Sbjct: 184 EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLFSPKAHED 230


>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
 gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
           [Leadbetterella byssophila DSM 17132]
          Length = 230

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A +I   L  + F+  +   G+ G++L     +D I+LDL L ++ G+E
Sbjct: 6   KILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPELNGYE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K S P+ +L+ +   EDK+ G + GADDY+ KPF+  EL+ARI   ++R+ G
Sbjct: 66  VCSEVRKRKPSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKRNAG 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +   +L ++LD KTV   G +I LT KE+ ++E L   K   ++K    + L
Sbjct: 126 AGASQENTLKIANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSAL 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  ++  + +++V+I  LRKK+         I T  G GY++ E 
Sbjct: 186 WEPNNQQSLNVVEVYINFLRKKIDKDF-IPKLIHTKTGMGYIIAEE 230


>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 234

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDK +   ++L L++E F V     GE+ +E+ +  E    ILD+ +  + GFE
Sbjct: 4   KILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ ILS  +   DK+ GL  GADDY++KPFN  E++AR+++ +RR   
Sbjct: 64  LTKKIREIS-NMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     ++++  G+LS+N ++  +   G+ I +T  EY+++ LL        TK  
Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     E +   I V I KLR K+ + +    YI+T+ G GY + + 
Sbjct: 183 IYELIKGEYFESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGYKIEKQ 233


>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A +I   L +E +   V   G   ++     + DA++LD+ L  I G EV
Sbjct: 4   ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGIDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++  +   PV +L+      D + GL  GADDY++KPF+  ELVAR++A++RR    
Sbjct: 64  CRRIQADRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDRA 122

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           AQ        S I  GD+ V+   + V      IHLT  E+ ++ +L+    T LT+E  
Sbjct: 123 AQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRERL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  I  LR+KL         I TV G GY      +D
Sbjct: 183 LAEVWDWVDASGTRTVDSHIKALRRKLGAD-----LIRTVHGVGYAFEPPEED 230


>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 221

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
 gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
          Length = 216

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 7/221 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +++ ++L L   N+       GE G+      +++ I+LDL L  I G EV
Sbjct: 2   ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR+ K  TP+ +L+    + DKV GLQ GADDY++KPF  EEL+ARI A++RR    
Sbjct: 62  CRQLRLKK-QTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVSNQ 120

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S     G++ +++    V+ +   I LT  E+ ++ LL       +TK   LN ++  
Sbjct: 121 NKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVWGY 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  +++V+I  LR KL+        IET+ G GY L 
Sbjct: 181 EKNVSTNVVEVYIRYLRNKLAGIN-----IETIRGIGYRLV 216


>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
 gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
           17241]
          Length = 230

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 120/229 (52%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   I+  +++E+      + G++G++  K  E+  ++LD+ +  + GFE
Sbjct: 3   KILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  A   +    L ++L+ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL        YI+TV G GY   +  
Sbjct: 182 EVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 230


>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 230

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++  L++E + V +   G +G+ L +  E   +ILD+ L  + G +
Sbjct: 5   QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + ++LR      PV +L+ +SSIEDKV GL+ GADDY++KPF  EEL+ARI A++RR R 
Sbjct: 65  LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L+       G  I LT KE   +ELL        ++E  L++++
Sbjct: 125 QRPRATTLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223
              ++P   ++DV++ +LR K+    G     ++TV G GY L +
Sbjct: 185 GMHEDPLTNVVDVYVRRLRSKIDE--GHPLALLKTVRGLGYRLDD 227


>gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3
           str. Ether]
 gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str.
           16M]
 gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC
           23457]
 gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28]
 gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++    T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLK 222


>gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 232

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           IL+ +DDK +  +IE+ L+ E +NV     GE+ +++ K  E  D +++D+ +  + G  
Sbjct: 4   ILVCDDDKEIVEAIEIYLRQEGYNVLKAYDGEEALKVLKREEKVDLLVIDVMMPRLDGIR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R    S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 64  ATLKIREEN-SLPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTK 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  ++   G LS++ D K V V G  + LT  EY ++ LL   +    + +  
Sbjct: 123 LGSTVVQNNNTVYTVGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 YESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 231


>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
           1112]
 gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
 gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
           1118]
          Length = 228

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A GG++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1]
 gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3]
 gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153]
 gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 84/232 (36%), Positives = 136/232 (58%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ E +   V + G  G++L    +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVQLELQHEEYETVVENNGRRGLDLALNEKFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVNI 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    Q ++   DL++    + V      I LT +EY ++  L   KN  +++E
Sbjct: 122 EKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             LN ++      E  +++V++  LR K+ +A    +YI+TV G GY++RE+
Sbjct: 182 QLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPDRPSYIKTVRGTGYMVRED 232


>gi|148284743|ref|YP_001248833.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
 gi|146740182|emb|CAM80430.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong]
          Length = 245

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 133/229 (58%), Positives = 174/229 (75%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD A A SIEL L +E        LG+DGIE+ K Y++  IILDL L DI G+
Sbjct: 1   MRVLLIEDDPAQASSIELSLANEGIIADKAHLGKDGIEISKLYDYSLIILDLMLPDISGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL +LR  KI TPV ILSG+S+I++K++GL  GADDYI+KPF+ +EL AR++AI+RRS+
Sbjct: 61  EVLLSLRSQKIQTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH------RIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           GH++++I  G LS+NLD ++V +          IHLT KEY+++ELL+++K T LTKEMF
Sbjct: 121 GHSEAVIRVGHLSINLDTRSVSMYNKDKQKNIPIHLTNKEYKILELLAIKKGTVLTKEMF 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+HLY G DEPE+KIIDVFICKLR+KL  A+ G N+IETVWGRGY+  E
Sbjct: 181 LSHLYSGIDEPEIKIIDVFICKLRRKLEKASNGINFIETVWGRGYIFAE 229


>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
 gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
           [Octadecabacter antarcticus 238]
          Length = 227

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+IED+ A    +   L +E + V   + GE G+ +      D I+LD  L  + G E
Sbjct: 5   HVLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHVSGIE 64

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L  R    + P+ +LS  S   DKVRGL++GADDY+ KP+   EL+AR+R  +RR 
Sbjct: 65  ICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRV 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++  GD+ ++ D   V      + L   E++++     +    L++E  L+ +
Sbjct: 125 RPSKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 185 WGRDIYVDTRTVDVHVGRLRKVLTQN-GGDDPLRTVRGAGYAL 226


>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 221

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ + + FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str.
           870]
 gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str.
           513]
 gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str.
           686]
 gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis
           M163/99/10]
 gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis
           B2/94]
 gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1]
 gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1]
 gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13]
 gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str.
           292]
 gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis
           M292/94/1]
 gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33]
 gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1]
 gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94]
 gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str.
           C68]
 gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99]
 gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653]
 gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330]
 gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941]
 gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840]
 gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365]
 gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo]
 gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915]
 gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1]
 gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2]
 gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLK 222


>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 253

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 117/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+   + V   + GE+ +E+      D ++LD+ L  + GF V
Sbjct: 13  ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 73  CRRLRAESC-VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 NAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1]
 gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044]
 gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator
           [Escherichia coli ATCC 8739]
 gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
 gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR
 gi|619132|emb|CAA58529.1| pcoR [Escherichia coli]
 gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper
           resistance [Serratia marcescens]
 gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1]
 gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894]
 gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii
           TW07627]
 gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli
           ETEC H10407]
 gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509]
 gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3]
          Length = 226

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++     ++  L  E +   + + G DG+      ++D IILD+ L  + G++
Sbjct: 3   RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 63  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +  +IDV + +LR K+ +       I TV G GYVL 
Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDF-EPKLIHTVRGAGYVLE 222


>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 240

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F V     G + +E  +  + D +I+D+ +  + G   
Sbjct: 13  ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVMMPGLDGIRT 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 73  TLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 131

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     +   G L +N D K V V G  I LT  EY ++ LL        + +   
Sbjct: 132 GNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDEIY 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 192 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 240


>gi|33865481|ref|NP_897040.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
 gi|33632650|emb|CAE07462.1| two-component response regulator, phosphate [Synechococcus sp. WH
           8102]
          Length = 235

 Score =  261 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD---AIILDLGLTDIP 58
           R+L++EDD ++  ++  +L++E ++V     G + + L           ++LDL L  + 
Sbjct: 9   RLLVVEDDDSIRETVGEVLRAEGYDVLTCGDGAEALNLFTSEPAQQVDLLVLDLMLPGLG 68

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R LR    +TP+ ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 69  GLDLCRELRRINNNTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 128

Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++        +    +L + ++   V   G+ ++L+ KEY+++EL         +++  L
Sbjct: 129 AQQDPSVLPEIYSHANLCLYVNECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQLL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      + K +DV I  LR+K+         I TV G GY  
Sbjct: 189 EKIWGIDFVGDTKTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRF 234


>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 226

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  ++ ++ L L  +   V     GED + + +    D ++LDL L  + G  
Sbjct: 4   RVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LRV     PV I++  +  +D + GL++GADDY++KP    EL ARIRA++RR+  
Sbjct: 64  VCHELRVRG-DLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDL ++   +TV   G +I LT  E++++  L+  +   +T+E  L+ ++  
Sbjct: 123 VRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWGR 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                 +++DV I +LR+K+         + TV G GY 
Sbjct: 183 DYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGYR 221


>gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
 gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  ++  L  ++  V +   G DG+ L     +D I+LD+ L  + GF
Sbjct: 1   MRILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVMLPGVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A+R  K  TP+ +L+   ++ED+VRGL+ GADDY+ KPF   EL+AR++A++RR R
Sbjct: 61  GVLAAVREQK-DTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L  +  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 120 SQEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV + +LR KL +       + TV G GYVL 
Sbjct: 180 MNFDSDTNVIDVAVRRLRSKL-DDPYDTKLLHTVRGMGYVLE 220


>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 227

 Score =  261 bits (669), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +   L+   F+V     G +     + +  D ++LDL L    G E+
Sbjct: 5   ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +RV   S P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RRS   
Sbjct: 65  CKDVRVFS-SVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGPG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +    L ++       + GH + LT  E+++++ L+       +++  ++ +Y   
Sbjct: 124 QTTAL--AGLVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIYPDE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                + ID  I KLRKK+++ A G++ I +V+G GY     ++ E
Sbjct: 182 RVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFERASRRE 227


>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRETK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|291166422|gb|EFE28468.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 227

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 133/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M++L++ED+ ++   + L  K E F+V  +D G   I++     +    ILD+ + DI G
Sbjct: 1   MKMLILEDEMSIRSFVTLNFKREGFDVLESDTGLSAIKIFDENPDIQLAILDVMIPDIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEVL+ +R    +  + +L+  +  +DKV GL+ GADDYI KPF+  EL+AR+R+++RR 
Sbjct: 61  FEVLKYIRSKSKNVGIIMLTARTHEQDKVMGLEYGADDYIGKPFSPAELIARVRSLIRRL 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +    ++IV+G   +++  +        I LT KE++M++L    ++ +L+++  LN 
Sbjct: 121 SIKDENVNVIVSGRFKLDVANRKFFRDETEIELTPKEFEMLQLFLTNRHKSLSRDYILNQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      ++K++DV I ++RKK+   A    Y++T+WG GY   + 
Sbjct: 181 IWGDNYFGDLKVVDVNIRRIRKKIEEDAANPTYLKTIWGYGYRWEDE 227


>gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator
           [Thiobacillus denitrificans ATCC 25259]
 gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator,
           Winged helix family [Thiobacillus denitrificans ATCC
           25259]
          Length = 242

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 128/227 (56%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+EL K   +D +ILD+ L  + G+
Sbjct: 13  MKILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVMLPGLDGW 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R A I TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+ +++RR +
Sbjct: 73  QVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRRGQ 132

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +S ++   DL ++L  +     G RI LT KE+ ++EL   RK   L + +  + ++
Sbjct: 133 AALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIASQVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +IDV + +LR K+ +       I TV G GYVL  +A+
Sbjct: 193 DMNFDSDTNVIDVAVRRLRVKI-DEGFDAKLIHTVRGMGYVLETSAE 238


>gi|26990167|ref|NP_745592.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985105|gb|AAN69056.1|AE016538_5 transcriptional regulatory protein RstA, putative [Pseudomonas
           putida KT2440]
          Length = 279

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 50  IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 109

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 110 CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 169

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 170 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 229

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 230 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 272


>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 239

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  + + + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR A  S PV +L+     ED+++GL+ GADDYI KPF+  ELV+RIRA++RR    
Sbjct: 69  LRRLRQAS-SVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +          L ++   + V V G R++L   EY+++  L       +T E  L+ +
Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + ++I  LR+K+        YI T  G GY   +
Sbjct: 188 WGPEYRDETHYLRLYITYLRQKIEEDPANPKYILTERGIGYRFVD 232


>gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +    +  + T+ G GYVL 
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLE 220


>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
 gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
          Length = 236

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L+   + V      E          +  ++LDL L    G  
Sbjct: 7   KILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R LR A+   P+ +L+      +++ GL +GADDY+ KPFN +EL ARIRA++RR   
Sbjct: 67  ICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAVLRRHVR 126

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  +  G   ++L  +T+   G    LT  E+ +++ L       LT++  
Sbjct: 127 ELPGAPSKEEGSVTFGPWLLDLGNRTLTRDGDPQSLTTGEFAVLKALLQNPREPLTRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++           + IDV + +LR+ L +      YI+TVWG GYV   +
Sbjct: 187 MSLARGREWSAMERSIDVQVSRLRRLLEDDPSKPRYIQTVWGVGYVFVPD 236


>gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 220

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   + + L    F        E+       +EFDA++LDL L D  G 
Sbjct: 1   MRVLIVEDDAVLRDGLTVGLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR  + +TPV +L+    + D++ GL +GADDY+ KPF+ +E+ AR+RA+VRR+ 
Sbjct: 61  DVLKSLRERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+LI    L ++   + VE QG  I L+ +EY ++  L +     L++      LY 
Sbjct: 121 GRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQIEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V I  LR KL     G   I+TV G GY L +  
Sbjct: 181 WQEEVESNAVEVHIHHLRGKL-----GPGMIQTVRGIGYRLGDEP 220


>gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 249

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           +L+++D+ A+  ++ + L+ + + V     G   +EL       D +ILDL L  + G +
Sbjct: 26  LLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAERLDLMILDLMLPGLNGLD 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+  SS  D+V GL+ GADDY++KPF   EL+AR R+++RR   
Sbjct: 86  LCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRRQQ 145

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     +++  GD+ +      V V+G  +  + KE++++EL         T+E  L  +
Sbjct: 146 SHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLERI 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 206 WGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 248


>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 241

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA  +   L +  +   + D G D +   + +  D I+LDL L    G  +
Sbjct: 9   VLVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLMLPGRDGLSL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      PV +L+      D++ GL++GADDYI KPF+  E+VAR++A++RR +  
Sbjct: 69  CQELRRFS-EVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRRHKRV 127

Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              L+   +  L ++ +     + GH + LT  E+++++ L+       +++  L+ L+D
Sbjct: 128 PTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFSRDQLLDKLHD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + ID  +  LR+KL  A  G   I +++G GY   
Sbjct: 188 DTRALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGYRFE 229


>gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 232

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   I+ +L+++   V   + G + + +     FD ++LD+ + DI G++
Sbjct: 5   RVLVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMISEGPFDLVLLDIMMEDIDGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL   R   I TP+  LSG     D++ G   GAD YI+KPF+   L A+++  ++R R 
Sbjct: 65  VLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYRQ 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S I  G    N    T +     I L+ KE Q+++      N   +KE    
Sbjct: 125 LQESKQQASRIALGPFLFNHHTFTFQKNNQEIALSSKEIQLMKFFMEHPNQVFSKEQLYQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++      +   I V+I  LR K+        YI+TVWG GY  
Sbjct: 185 NIWK-DTVVDNNTIMVYIRHLRTKIEENPTNPKYIKTVWGIGYRF 228


>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 229

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  +        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+     ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VSGHDRMVQTVRGTGYRF 225


>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
 gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
           [Thioalkalivibrio sp. K90mix]
          Length = 229

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A+   ++L L    + V           L      D I+LD  L D  G +
Sbjct: 4   KILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTSGLD 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R L+ + I    P+ +L+     ED+VRGL  G DDY++KPF+  ELVARI+A++RR+
Sbjct: 64  WARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRRT 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++  +    L ++  +  V   G  + +   EY ++      ++   T+   L+ +
Sbjct: 124 APITSEEPVEVEGLRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + +DV I +LRK L    G  + ++TV G GY   +  
Sbjct: 184 WGTNVYVEERTVDVHIRRLRKAL-ALTGHDHLVQTVRGSGYRFSQTP 229


>gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
 gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
          Length = 241

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ +   I   L S N +V      E  ++    + +  I+LD+ L  + G  
Sbjct: 5   KLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R ++    +T V +L+ +SS  D+V GL+ GADDYI KPF   EL AR++  +R    
Sbjct: 65  LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        ++  +  G L++  D+  V +    I+LT  E+ ++   +   N   
Sbjct: 125 LLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++  L+ ++  +       ++  I +LR KL         IETVWG GY L  +
Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNPS 238


>gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 223

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL++DD+ L   +   L +E F V V   GE G+     + +D ++LD+ L  + G+
Sbjct: 1   MRVLLVDDDRRLVGLLARGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR A + TP+ +L+      D+  GL +GADDY++KPF+   LVAR+RA+ RR  
Sbjct: 61  RVCARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARLRALARRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL V+   +    +G  I LT KE+ ++E L+ RK   +TK+  L  ++D
Sbjct: 121 AGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKDEVLAGVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +  +++V++  LR+K+ +   G   I TV G GY L E+
Sbjct: 181 SAREADHNLVEVYVSALRRKI-DLPFGTFTITTVRGVGYRLEES 223


>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 248

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   I+ +L+ E + N+      E+ I + K  + D I+LD+ +  + GFE
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 77  ACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++           + +     + V G  +  + +  Q+++      N  L+K+     
Sbjct: 136 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I KLR+K+        YI TV G GY    N +
Sbjct: 196 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 244


>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 225

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+D+  +   I+L L++E + V     G + ++    +  + +ILDL L DI 
Sbjct: 1   MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLMLPDIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V   +R      P+ +L+  SS +  + G   G+DDYI+KPF+ ++LVA++ A+++R
Sbjct: 61  GENVCERIRKES-EVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119

Query: 119 SRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +G+  ++LI   +L +++  K VE     I LT  EY+++ +L+   N   ++E  +++
Sbjct: 120 VKGNQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDY 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +         +IID  I  +R KL   +    YI+T+ G GY  
Sbjct: 180 ISRDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRF 223


>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L+   +     +  +    +    + D I+LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R L+  +  +  P+ +L+     ++K++GL  GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRRTG 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +++ I  G L ++  +  V + G    +   EY++++     +    T+   L+ ++
Sbjct: 126 PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L         ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRF 225


>gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 225

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   + L +     N       E    L +    D I+LD  L  + G E 
Sbjct: 5   ILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMNGLEF 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+      + P+ +L+      DKVRGL+ GADDY++KPF+  EL ARI+A++RR  
Sbjct: 65  ARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    L ++     V      I L   E++++           T+   L+ ++
Sbjct: 125 PQMTDDPIEMAGLRLDPTTHRVTGNNKTIDLGPTEFRLLHFFMTNAERVHTRSQLLDKVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             R   E + +DV I +LR  LS  +G ++ I+TV G GY L E
Sbjct: 185 GDRVFVEDRTVDVHIRRLRNALS-LSGHEDLIQTVRGAGYRLSE 227


>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +   +  + D  ILD+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+       K++G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  LCYELR-KYYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N +   V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRNTFEVNAGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222


>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 247

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+ ++   +E  L    + V     G + ++     E D ++LD+ +  + G+ V
Sbjct: 11  ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR      P+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARIR ++RR    
Sbjct: 71  IQELRKES-DVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKE 129

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I      ++ + + V     RI LTG E+ ++ELL  R     ++   L 
Sbjct: 130 QIAGLPNSGVIQVAAFRIDTNRRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILK 189

Query: 177 HLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 EVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQ 237


>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
 gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
          Length = 226

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  E + V     G + ++L  +  +   +ILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+  S   D+++G   G D+YISKPF+ + LVAR+ AI+RR++
Sbjct: 65  QVCREIRE-HSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQ 123

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G + ++  A  V++    I L+ KE++++      +   L++E  LN+++
Sbjct: 124 STESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR KL       +YI T+WG GY   
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---DYIRTIWGMGYKFE 223


>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 243

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +   V   G D +   + Y  D ++LD+ +  + G  
Sbjct: 9   RILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR    + PV +L+   ++ D+V GL +GADDY+ KPF  +EL ARIRA++RRS  
Sbjct: 69  AARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 128

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                          ++   DL ++L  + V      + LT  E+ ++ELL       LT
Sbjct: 129 ASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVLT 188

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++    EP    +DV++  LR+K + A G    + TV G GYVLR
Sbjct: 189 REQILKSVWGFDFEPTSNSLDVYVMYLRRK-TEAGGEPRIVHTVRGVGYVLR 239


>gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
 gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator
           protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           Peru-466]
 gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           AN-5034]
 gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus
           K5030]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G+
Sbjct: 1   MKILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+AR++ + R   
Sbjct: 61  QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    +
Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++D   + +  +IDV + +LR K+ +    +  I TV G GY L E+
Sbjct: 181 LVWDMNFDSDTNVIDVAVKRLRSKV-DKPFDRPLIHTVRGMGYKLEES 227


>gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 224

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST + +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + S  +  GDL ++           RI LT KE+ ++ LL       ++    ++ ++
Sbjct: 120 QTSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 245

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  ++   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 80  VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ ++  I+L L+ E F V     G    E     ++D ++LDL L  + G++
Sbjct: 5   KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R     TP+ +L+    +E+KV+GL  GADDY++KPF   EL+ARI A++RR   
Sbjct: 65  VCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       + +   +L  ++DA  + +    I++  +E Q+++ L +  N    +E  
Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  ++    E E ++ID++I +LRK+L +       I+TVWG GY   
Sbjct: 184 IEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFE 231


>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
 gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +   ++ E F V     G++ ++  + Y    I+LD+ +    G EV
Sbjct: 5   ILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + +R+ K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+A+ RR    
Sbjct: 65  CKLIRL-KSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITAH 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +  S+I    L +++D  +V++ G  ++LT KE +++ +LS   N  ++++  L+ ++
Sbjct: 124 KNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I ++R KL  +      I+T+WG GY   
Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGYKFE 226


>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 246

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 113/228 (49%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD A+   +   L+   + V     G  G         D I+LDL L  + G  
Sbjct: 3   RVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDGLT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  + +   P+ +L+ +  I+DKV G  +GADDY++KPF  EEL+ R+RA++RR+
Sbjct: 63  ICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          I LT  E++++  L  R   T++    
Sbjct: 123 DRMPQAARHAEILSLGPLTLIPERFECIWFNKPIKLTHLEFELLHCLLQRHGQTVSPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR KL        +I+TV+G GY L 
Sbjct: 183 LREVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPQFIKTVYGAGYCLE 230


>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
 gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
          Length = 254

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V
Sbjct: 34  ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +  
Sbjct: 94  CFELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G++ +N     V +    + L  KE++++  L  +   T ++E  +  ++   
Sbjct: 153 VSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV + +LR+K        + I+T+ G GY L 
Sbjct: 213 FEGNERTLDVHMNRLREKFQEEKSRFS-IKTIRGLGYRLE 251


>gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445]
 gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445]
          Length = 235

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+         + TV G GY+L+
Sbjct: 181 NYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLK 222


>gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 226

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M IL++EDD  + + +   L+     V   D G+DG+ L     FD IILD  L   I G
Sbjct: 1   MHILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L  +R    STPV +LS ++ ++D+V+GL++G DDY++KPF   EL+AR+ A+ RR 
Sbjct: 61  LRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRG 120

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R        +   DL ++L +++    G RI L  +E++++E L       +T+ M L  
Sbjct: 121 RSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEG 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +P+  +IDV + +LR+K+ +       I T+   GY+LR
Sbjct: 181 VWDYHFDPQTNVIDVHVSRLRQKV-DKPFDTPLIHTIRNAGYMLR 224


>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
 gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I+  L ++N+N+ V   G +GI+      FD I+LD+ + ++ GFEV
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+  L+ +   +D+++G   G DDYI+KPF+   L+ R++A++RRS   
Sbjct: 65  AKMLR-NHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  + +   +L+V+ D     V    I LT KE+++++LL   +   LT+E+ +  ++  
Sbjct: 124 SWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  LRKKL        YI+TV G GY + E
Sbjct: 184 DYSGETRMIDTHIKNLRKKL-----NLPYIKTVKGIGYKIDE 220


>gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
 gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
          Length = 250

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 18/240 (7%)

Query: 1   MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           MR     IL++ED+  +A +IE+ LKS+ +NVY+ + G+ G+E+ + Y+    I+D+ + 
Sbjct: 13  MRMNQDNILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMP 72

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
            + G E+   +R      P+  LS  S   DK+ GL  G DDY++KPF   EL+AR+ + 
Sbjct: 73  VMDGIEMTMKIRE-NYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQ 131

Query: 116 VRRSRG-----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           +RR               A +  V G L ++LD K V V G  + +T  E +++ELL  +
Sbjct: 132 LRRYHKYLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEK 191

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + E    +++        + + V +  LR+K+        Y++ VWG GY + + 
Sbjct: 192 PGRVFSSEQIYENVW-HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEKQ 250


>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
 gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9215]
          Length = 263

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 4   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 63

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 64  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 123

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          I LT  E++++  L  R   T++
Sbjct: 124 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-------E 223
             + L  ++    + +++ I V I  LR KL        YI+TV+G GY L        E
Sbjct: 184 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLELPIGSQVE 243

Query: 224 NAKDE 228
            A++E
Sbjct: 244 TAREE 248


>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 227

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD  L   I   L    + V     G   +      + + +ILD+ +  + GF
Sbjct: 1   MKILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R   I  PV +L+  +S +D +RGL  GADDY++KPF+   L AR+RA++RR  
Sbjct: 61  EVCRRIRAQSI-VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   + +  GDL ++ D ++V  +G   + LT +E+++++ L       ++ E    H++
Sbjct: 120 GERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +  ++   + +LR+K+        Y+ T+   GY+L+ N 
Sbjct: 180 GHHGIGDRTLLKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPNG 225


>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
 gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
           10782]
          Length = 228

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARI AI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
 gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
           HGF1]
          Length = 222

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++D+  +   ++  L +E +   V   G+  + L   Y +D I+LD  L D+ G 
Sbjct: 1   MRILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVSGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + +R      P+ +L+     ED++ G Q G DDYI KPFN  EL+ RI+AI++R+ 
Sbjct: 61  EICKQIRQQS-DIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKRTI 119

Query: 120 RGHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   Q LI  G D  +N  +  ++V+G  + LT  EY+++  LS       T+E  L + 
Sbjct: 120 KKDNQDLIKFGTDFELNTLSHQLKVKGQEVPLTNTEYKILLALSSHPQKVYTREELLAYA 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            DG  E   ++ID  I  LR K+   +     I TV+G GY  
Sbjct: 180 VDGYVEKFDRVIDSHIKNLRHKIEIDS----IILTVYGVGYRF 218


>gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 224

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 13/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I + L +++ NV+    G + +++ +  + D I+LD+ +  + G + 
Sbjct: 6   ILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENTKVDLIVLDVMMPKMDGMKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K++ P+ ILS      DK+ GL  GADDY+ KPFN  EL+ARI++ +RR +  
Sbjct: 66  CMKIRE-KLNVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYKQL 124

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   +LS+N+    V ++  +I LT  E++++ LL+  +    +     
Sbjct: 125 NNNFKALQEEVIQIDELSINISTHEVFLKDKQIKLTPYEFKILVLLAQNRGKVFSIASIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++++       + + V I ++R+K+        YI+TVWG GY 
Sbjct: 185 ENVWEEDYVASDRTVTVHIRRIREKIGRD-----YIKTVWGVGYK 224


>gi|296123001|ref|YP_003630779.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296015341|gb|ADG68580.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 225

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD A+  S++        +      G  G E     + DAI+LDL L    G+
Sbjct: 1   MNVLVIEDDPAIGRSLQQGFSEAGHHCVWQQNGISGYETALSRQADAIVLDLLLPGESGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR A +  P+ +L+ + SI+D+V+GL+ GADDY+ KPF+  EL+AR+ A+ RR+ 
Sbjct: 61  DVLQKLRAAGVQAPIILLTALGSIDDRVKGLKLGADDYLVKPFDFAELMARLEAVQRRTG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++    L+++L  + V        I LT  E+ ++ELL       +T++M   H+
Sbjct: 121 NKPSMILQAAGLTLDLTTRRVTSNDTEKEIDLTPIEFSLLELLMRYAGQVVTRKMLCEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +    +I+V + +LR KL      ++ I+TV GRGY L
Sbjct: 181 WGFNWDGTTNVIEVHVNRLRGKLDKD-RDQSIIKTVRGRGYAL 222


>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 235

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I + L+   F    ++ GE           D I+LD  L    G +
Sbjct: 6   RVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPGQSGLQ 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +   DL ++     V  QG ++ +   E++++  L        ++   L+ +
Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQLKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR+ L  A      +ETV G GY L
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGVAGA---MVETVRGAGYRL 225


>gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 230

 Score =  261 bits (668), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 119/220 (54%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL EDD+ +A  +   L  +++ V V   G+        Y +D ++LD+ L +I GF 
Sbjct: 3   RILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +L+ +    D+V GL SGADDY+ KPF+ EEL AR+RA++RRS  
Sbjct: 63  LCRRLREAGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLRRSGP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G LS++         G  +HLT KEY+++E L        ++EM L+ L++ 
Sbjct: 123 TRGPVLKAGPLSLDPLMLQATYGGLPVHLTPKEYRLLECLLRHPGQIFSREMLLDRLWEP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +   + +LR+KL  A   ++ ++TV G GY  
Sbjct: 183 AHAGGDDAVKALVLRLRRKLQEAGAPQDLLKTVHGFGYCF 222


>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    GE+ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARE-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230


>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
 gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
          Length = 232

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  +I++ LK+E   VY    G D + + +  E   I++D+ +  + G + 
Sbjct: 6   VLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K   P+ +LS  S   DKV GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREKK-DIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        +  G + +N  AK V V G  I  T  EY+++E L        + +    +
Sbjct: 125 SNYKINKEELKVGGIILNKIAKRVTVDGEEIRFTPIEYKILEFLMESIGQVFSIKQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        Y++ VWG GY ++E 
Sbjct: 185 VWNEPCYNAENTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKIQEQ 231


>gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302]
 gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302]
          Length = 214

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 10/213 (4%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             E + V     G + +E  +  + D IILDL L +I G EV + +R    S P+ +LS 
Sbjct: 2   TKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS-SVPIIMLSA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL---------IVTGD 131
             S  DKV GL+ GADDY++KPF+  EL AR++A++RR+   +            +  GD
Sbjct: 61  KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTELASADNQEPETKLQSLQIGD 120

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L +  DA   +  G  + LT +E++++  L+      +T+E  L  ++      +V+ +D
Sbjct: 121 LEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITREHLLETVWGYDYFGDVRTVD 180

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           V I +LR+K+ +      YI T  G GY +R N
Sbjct: 181 VTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 213


>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 229

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ +       +   IILDL + ++ G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  ++  DK++GL SGADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVIKQVRKDS-DIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G        ++  G L++N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G+  I+TV G GY + ++
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGYKVEDH 229


>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
 gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
          Length = 222

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +++ ++  L+ E F V + D G+ G+EL     +D ++LD  L  I G 
Sbjct: 1   MRILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLPGISGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R  R     TP+  L+   ++++ + GLQSGA+DYI KPF+ EEL+ RIR  +R  +
Sbjct: 61  ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+     G + ++ +   V      I LT KE+ ++E L   KN    +   +  ++D
Sbjct: 121 G-AKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +IDVFI  LRKKL +    ++YI+T+ G GY+ +E
Sbjct: 180 IHFDYNTGVIDVFINSLRKKL-DLQKDEDYIQTIRGVGYIAKE 221


>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 229

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           ++L++ED++ +   + + LK   +       GED +   K        +LD+ L  I GF
Sbjct: 3   KVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R       + +L+  +   DKV GL +GADDY++KPF+  EL AR+ A+ RR+ 
Sbjct: 63  EVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRRTG 122

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G  +      I      +N   +T+E  G R+ LT  EY +++L        L++E  L+
Sbjct: 123 GEEEETSPDEISQPPFLLNTRNRTLEKNGQRVKLTQVEYGIVKLFMENPGKALSREEILD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E+KI+DV I +LR K+ +      Y+ TVWG GY  
Sbjct: 183 AVWGKDYFGELKIVDVNIRRLRIKIEDNPTKPTYVNTVWGYGYKW 227


>gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 224

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   +    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 227

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL       N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLRVISPDE 227


>gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
 gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114]
          Length = 225

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 135/224 (60%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L+ E F V  +D G++G+ +    ++  IILD  L ++ G 
Sbjct: 1   MKILVIEDDQTTRDFVTKALEQEGFIVDSSDDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   +L++NL ++ V +  + + L  KE+ ++  L+   +  +++       
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I KLRKKL + +G  + IETV G GYVLR
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKL-DNSGAVDLIETVRGAGYVLR 223


>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 232

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +++ L  + +       GE+ I++ +  +    ILD+ L  I G+E
Sbjct: 5   KILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R     T + ++S  S   DK+ GL+ GADDYI KPFN +EL+ RIR+++RR   
Sbjct: 65  VCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRVNL 124

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   +  I  G  ++++ AK+       I +T  E+ ++E     K   +T++  
Sbjct: 125 TNSQDKEKTRKTITDGPFTLDIYAKSFFKNDKEIDVTPTEFTILENFINNKGKAMTRDEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+ +      YIETVWG GY  +
Sbjct: 185 MAMTWGNNYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYRWK 232


>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 234

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK ++F VY  + G + + + +    DA ILD+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+    ++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +S     +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L++
Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGETQLIHTVRGVGYVLR 230


>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 210

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G+D + +     +D +ILD+ +  + G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV--T 129
             P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR     Q       
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQF 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G + +N  ++ +E+ G  I LT KE+ ++  L        ++E  L  ++        + 
Sbjct: 120 GSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWGYDYAGSTRT 179

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 VDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 209


>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED++ L   +    ++E F V   + G+  +EL   +E D I+LD+ L +I G+ V
Sbjct: 5   VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEIDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R    + P+ +L+  S  +D + G + GAD+Y++KPF+ + LVAR + +++R+ G 
Sbjct: 65  CRRIRKES-AVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +    + VN  ++TV V G  I LT KE++++  L   K   L+++  L+ L
Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D  I KLR KL + A    +I TV    Y   E
Sbjct: 184 WGYDYYGDDRTVDTHIKKLRNKLGDKA---KHIGTVIRVXYKFEE 225


>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czccba [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
           of heavy metal resistance operon czcCBA [Cupriavidus
           taiwanensis LMG 19424]
          Length = 229

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F V +   G DG+   + + +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  +  TPV  L+    + D+++GL+ GADDY+ KPF   ELV RIR I+RR  
Sbjct: 61  EVLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ ++ LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV I +LR K+ +    +  I T  G GYVL +
Sbjct: 180 VNFDSNTNVVDVSIRRLRAKV-DDPFPRKLIHTRRGMGYVLDD 221


>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 253

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+   + V   + GE  +EL      D I+LD+ L  + GF V
Sbjct: 13  VLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDGFAV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 73  CRRLRAESC-VPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  G+L V+ + + V     RI+LT  E+ ++ELL       + +
Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241


>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
           neapolitanus c2]
 gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 230

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L    +++       +  E       D ++LD  L    G E 
Sbjct: 6   ILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGIEF 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++  +I    P+ +L+     EDKV GL++GADDYI+KPF+  EL+ARI+A++RR+ 
Sbjct: 66  ARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRRAS 125

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  +I    L ++ ++  V      I +   E++++           ++   L+ ++
Sbjct: 126 PDSEGGVIEVAGLRLDPESHRVTGGSVDIEVGPTEFRLLTFFMTHPERVFSRTQLLDRIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK L  +      I+TV G GY L   A
Sbjct: 186 GRNAYVEERTVDVHILRLRKALVPSGFDA-LIQTVRGVGYRLSSKA 230


>gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 226

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 119/220 (54%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD AL   ++   +++ + V +   G++G+        D ++LD+ L  + G+E+
Sbjct: 6   VLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKMNGYEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R  +   P+ +L+     ED +RGL+ GADDY++KPF+  EL+AR  A +RR +GH
Sbjct: 66  CRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFLRRRKGH 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A ++   GD  ++L A  +   G  I LT KE++++E  + R    LT++  L+ ++   
Sbjct: 126 AATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGND 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  +  LR K+         I+T+   GY   
Sbjct: 186 IVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFE 225


>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
 gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
          Length = 240

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K + +SI  +LK E +       G + +++ +    D I+LD+ +  + G  
Sbjct: 5   KILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  LR  K   PV ILS  +   DKV GL  GADDYI KP+N  EL+AR++A +RR R 
Sbjct: 65  ALMKLRE-KSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            +            IV G L ++   + + V+G  +HLT  EY+++ELL          E
Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183

Query: 173 MFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +++    D      + V I  +R+K+   A    Y++ VWG GY + +  K
Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEKYGK 238


>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 230

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E +   + D G  GIE     ++D I+LDL L ++ GFE
Sbjct: 5   KILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S  D+V GL  GADDYI+KPF  EEL+AR+RA  RR   
Sbjct: 65  VARRLRKEK-DTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                        DL ++   +TV      I LT +EY ++  L       +T+E  ++ 
Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+RE
Sbjct: 184 VWGYEEGTETNVVDVYIRYLRNKI-DVEGQDSYIQTVRGLGYVMRE 228


>gi|220925326|ref|YP_002500628.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219949933|gb|ACL60325.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 228

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   G DG  L +  ++D +++D  L  + G 
Sbjct: 1   MRLLIIEDDREAASYLSKAFREAGHVADLAADGLDGYALAREGDYDVLVVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   + TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI  + RR  
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARIEVLARRRG 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L H+
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   +P+  +IDV + +LR K+         I TV G GY++R   +
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRAKVDKGFERP-MIHTVRGAGYMVRAGGE 227


>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 224

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           ++L+++D+  +   ++  L   N++V   + GE  +++  +  +   IILD+ +  + G+
Sbjct: 5   KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R      P+ +L+  S  +D++ G + G D+YISKPF+ + LVAR+ AIVRRS 
Sbjct: 65  QVCKEIR-KYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G + ++  A  V++    I L+ KE++++      +   L++E  LN++++
Sbjct: 124 QTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+ +     +YI+T+WG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGDKG---DYIKTIWGMGYKFE 222


>gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 239

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +E  L  + F V      E    L +   F  ++LDL L    G  
Sbjct: 7   KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLIERENFHLMVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR  +   P+ +L+      D++ GL+ GADDYI KPFN  EL+ARI+AI+RR   
Sbjct: 67  ICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRAK 126

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++LI  G  S+NL  + +      I LT  E+ +++ L L     L+++  
Sbjct: 127 EVPGAPAAEENLIEFGRFSLNLATREMSEGDKTISLTSGEFAVLKALVLHPREPLSRDKL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +N           + IDV + +LR+ +   A    YI+TVWG GYV   + +
Sbjct: 187 MNLARGRDYSALERSIDVQVSRLRRMIELDAASPRYIQTVWGLGYVFVPDGE 238


>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 229

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKTVRKDS-RIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      +  G L +N D+  V    G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
           Sunitezuoqi]
          Length = 232

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G  G E  +   +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSG 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     ++  DL ++ + +    QG  I L+ KE Q+++         +T    + 
Sbjct: 121 SQTYETTTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIME 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +L+   ++P   +I   I  LR+K+         I TV+G+GY  
Sbjct: 181 NLWQEEEQPSSNVIAALIRLLRRKIE-VGKETTLIHTVYGKGYRF 224


>gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus
           thiooxidans]
          Length = 224

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+   A  ++       + V V D G DG  L +  E++ I+LDL L    G+
Sbjct: 1   MKILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      PV +L+ + ++  +V GL+ GADDY+ KPF   EL+ARI +I+RRS 
Sbjct: 61  WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I   DL ++L    +      I+L  +E++++  L       LT+      ++D
Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  ++DV I +LR+K+ +       I T+ G GYVL 
Sbjct: 181 MHFESDSNVVDVAIRRLRRKV-DDPFPDKLIHTLRGVGYVLE 221


>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
 gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
          Length = 225

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 133/227 (58%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  I   LK E F V V   GE+G+ +     FD +ILD+ L    G+E
Sbjct: 4   RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+++R + ++TPV +L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR   
Sbjct: 64  ILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V GDL ++   K        I LT KEYQ++E L + KN  +TKE    HL+  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSF 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            DE    ++   I  LRKK  +    K  I TV G GYV    A+DE
Sbjct: 184 DDEVFSDVLRSHIKNLRKK-VDKGFKKKIIHTVRGIGYV----ARDE 225


>gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 219

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEQSGWVAELSSDGIDALYRATSEPWDAIVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +RRS 
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  GDLS++     V  QG  + LT  E++++  L    +  +++   + H+Y 
Sbjct: 121 GNASPVIQAGDLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++R+K+ N       I+TV G GY +
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRI 216


>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 229

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L  E + V  T  GE  +E+ +    D I+LDL L  + G E
Sbjct: 5   RILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGMDGLE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+  + +   P+ +L+      D V GL+ GADDY++KPF+ + L+ARIRA++RR 
Sbjct: 65  VAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRRK 124

Query: 120 R---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I   +L ++   + V V    I LT  E+ ++  L  R     T+   ++
Sbjct: 125 ATETPKPSDVIKVQNLIIHPGRREVRVDDKVIDLTYTEFGILRYLVQRPGWVFTRSQIVD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +         + +DV I  LRKKL        YIETV G GY  RE
Sbjct: 185 AVRGSDYFVTDRSVDVQIVGLRKKLG---FMGKYIETVRGVGYRFRE 228


>gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591]
 gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 243

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA  +   L++  +  +    GE+     + +    I+LDL L    G  +
Sbjct: 16  VLIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R    + P+ +++  S   D++ GL+ GADDYI KP++  E+VAR++ ++RR R  
Sbjct: 76  CRAIRGFS-NVPIIMVTARSDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 AQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + L       L ++ +       G  + LT  E+++++ LS       ++E  L+HLYD
Sbjct: 135 HEPLPNDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                  + ID  I  LR+KL       ++I TV+G GY     A  E
Sbjct: 195 DYRVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWEAAASQE 242


>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
 gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
           thermophila UNI-1]
          Length = 239

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   ++  L++E F V   + G + ++L      D ++LD+ +  + G+E
Sbjct: 4   KVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   L       P+ +L+  +S +DK+RG Q G DDY++KPF+  EL ARIRAI+ R++ 
Sbjct: 64  VCSRLHELS-DIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQR 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++ I  G+  ++LD + +       I LT  E++++E L+  K   ++++    
Sbjct: 123 SLPAQRKNQITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   +  +I  LR+K+ +      +I TV G GY L
Sbjct: 183 QVWGVYLSSDRSAVRRYIWLLRQKIESDPTHPRWIRTVRGYGYRL 227


>gi|264676241|ref|YP_003276147.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299533423|ref|ZP_07046805.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262206753|gb|ACY30851.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298718629|gb|EFI59604.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 243

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------FDAIILDLGLT 55
           ++L+IEDD  LA  +   L +    V     G+ G+E  +  +       D +ILDL L 
Sbjct: 5   QLLMIEDDVRLAQMVSDYLGNNGLEVTHMADGKSGLEQLQPSDGGSVELPDLVILDLMLP 64

Query: 56  DIPGFEVLRALRVAKIS---TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
           D+ G EV R +R    +    PV +L+      D++ GL+ GADDY+ KPF   EL+ARI
Sbjct: 65  DMDGLEVCRRIRSMPGTPAQVPVLMLTAKGDPMDRIIGLELGADDYLPKPFEPRELLARI 124

Query: 113 RAIVRRSRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           RAI+RR    +Q+      +  G L ++ DA+TV V   +  LT  ++ ++  L+ R   
Sbjct: 125 RAILRRKGSESQATPANAVMRFGSLEIDRDARTVSVGEQQADLTSYQFDLLVALAERAGR 184

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            LT++  +  +     E   + IDV + ++R  +         I TV G GYV  + 
Sbjct: 185 VLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVFAKQ 241


>gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45]
 gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45]
          Length = 225

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  +A  I   L     +V     G D +  C + + D  ILD  L  + G 
Sbjct: 1   MKILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDCDLAILDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ALR ++ + PV  L+ +  ++D+V GL +G DDY++KPF+  ELVARI AIVRR S
Sbjct: 61  SVLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRKS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++   DL+++L ++T   QG+ I L  KE+ ++E+L       +T+ + L  ++
Sbjct: 121 EKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTRTLLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   EP   +++  + +LR K+ +       I T+   GY
Sbjct: 181 NFNFEPNTTVVETHMSRLRAKV-DRPFDTPLIHTIRNTGY 219


>gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 237

 Score =  261 bits (668), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +++D+  +   I+  L++  + VYV   G D + L      D IILDL L DI G +
Sbjct: 11  KIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGED 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+G +  ED + GL  GADDY++KPF+  +LVAR++A++RR+  
Sbjct: 71  ICEMLRKRS-KVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL +N     V+  G+ ++LT  EY ++  +        T+E  + 
Sbjct: 130 ELGEKNSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIFTREELII 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  +   + ID  I  LR K+ +      YI T+ G GY  
Sbjct: 190 VTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKF 234


>gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
 gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC
           19624]
          Length = 227

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+ A+A  I + L+   F   +   GE           D ++LD  L    G  + 
Sbjct: 2   LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWMLPGASGLTLA 61

Query: 64  RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           R  R    +   P+ +L+      D+V GL +GADDY++KPF+ +E++ARIRA++RR   
Sbjct: 62  RRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRRAP 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L ++     V      + L   E++++  L        ++   L+ ++ 
Sbjct: 122 EQAAVTLEAGRLKLDTATHRVSYDEQLLKLGPTEFKLLHYLMSHAERVHSRGQLLDKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E + +DV I +LR+ L  AA     IETV G GY L
Sbjct: 182 DHVFIEERTVDVHIKRLREALGAAA---PMIETVRGAGYRL 219


>gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. mori str. 301020]
 gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 225

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
 gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanospirillum sp. MED92]
          Length = 231

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I + L+   +     +       L    + D ++LD  +    G E 
Sbjct: 7   VLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASGIEF 66

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR  +     P+ +L+     ++K++GL++G DDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 67  ARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLRRTT 126

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +    L+++  +  V    + I L   E+++++     ++   ++   L+ ++
Sbjct: 127 PKGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYSRSQLLDMVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    E + +DV I +LRK L +       ++TV G GY    N 
Sbjct: 187 GGNVYVEERTVDVHIRRLRKALGD--RHDYLVQTVRGTGYRFSSNV 230


>gi|227551872|ref|ZP_03981921.1| response regulator [Enterococcus faecium TX1330]
 gi|257895536|ref|ZP_05675189.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227179044|gb|EEI60016.1| response regulator [Enterococcus faecium TX1330]
 gi|257832101|gb|EEV58522.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 238

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++        +D I LDL L  + 
Sbjct: 1   MNILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDAFLENPQHWDMITLDLNLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
           S                 I T    +N   +   +    I  LT KE+ ++  L+ +   
Sbjct: 121 SELAEAREEAAASDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKPRQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 VFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 236


>gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 231

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 127/227 (55%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+ +++ ++   L+ E + V     G++ +E  + ++ D ++LD+ +  + G++
Sbjct: 3   KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPKLSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +    + +L+    I DKV GL+ GADDY++KPF+  E++AR++A+ RRSR 
Sbjct: 63  VCRRL-GDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRT 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +        +I    L++NL  +T+  +G  + LT KE+ ++ LL+       ++E 
Sbjct: 122 PEAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREA 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            L  ++D       + +D+ + +LRKKL N       I+TV+G GY 
Sbjct: 182 LLEQVWDMDFAGGTRTVDIHVQRLRKKLGN---QHEVIQTVYGIGYK 225


>gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 228

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 116/218 (53%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A+A  + L L  + F V++   G+ G+   +       +LD+ L  +PG E+
Sbjct: 11  VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  L+      D++ GL+ GADDY++KPF+  ELVAR+RA++RR  G 
Sbjct: 71  CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRVAGP 130

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 + G ++++ D +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 131 PPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +DV + ++R KL    G ++ I T  G GY
Sbjct: 191 AVPAGTRTVDVHVAQVRAKL----GPESVIRTHRGVGY 224


>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 217

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 131/222 (59%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPNSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I  LR+KL +    ++YI+TV G GY   
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214


>gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes
           HL096PA3]
 gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266]
          Length = 236

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R      P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIRRESG-VPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 237

 Score =  260 bits (667), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDDK +   +E+ LKS+ + V+    G +G+++    E    I+D+ +  + G  
Sbjct: 5   HILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEEIHLAIVDVMMPRMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   LR  K   PV ILS  +   DK+ GL  GADDYISKPF   EL+AR+ + +RR R 
Sbjct: 65  MTVKLRE-KYDFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYRK 123

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         ++ V G L +N D   V V G    LT  E++++ LL        +
Sbjct: 124 YLDMLEAKELKEKSNIYVIGGLELNEDTVEVTVDGKPAKLTPIEFKILALLMKNPGRVFS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E     +++ R       I V + K+R+K+        Y++ VWG GY + + A
Sbjct: 184 AEEIYERVWNER-AINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEKQA 237


>gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 219

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   K + +D I+LD GL +  G 
Sbjct: 1   MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVKQHHYDCILLDRGLPNASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R   +  PV  ++    I D+V GL  GA+DY+ KPFN EEL ARIRA +R+ +
Sbjct: 61  DILKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++ +AKTV   G  ++LT KE+Q++  L    N  +T+E     LY 
Sbjct: 121 KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI ++RKK+     G   I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQIRKKI-----GSQLIKTIRGLGYRM 216


>gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
 gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759]
          Length = 222

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K L   I   L  E +NV     G+  ++  +  E+D +I+D+ +  + G 
Sbjct: 1   MRMLVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMIPHVNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R      PV  L+     +D VRGL +GA DY++KPF   E +AR+R ++R   
Sbjct: 61  EVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +++I  G L V+++       G  I LT +EY ++E L+  +N  +T+E    ++++
Sbjct: 121 VVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+    ++DV+I  LR+K+ +    K  I+T+ G GY L 
Sbjct: 181 IDDDVNSNVVDVYIRYLRRKIDDKYDDK-LIQTIRGVGYKLE 221


>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
 gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
          Length = 228

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 254

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-------YEFDAIILDLGL 54
           RILL+ED++     +   L+ + F V   + G+  +E+ +           D ++LDL L
Sbjct: 20  RILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLML 79

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             + G EV   +R +  S PV +LS   +  DK+ GL+ GADDY++KP++  EL+AR++A
Sbjct: 80  PRLDGTEVCTRIRRSS-SVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 138

Query: 115 IVRRSR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           ++RRSR      + ++  G + ++++   V V G  + +  +E++++EL        LT+
Sbjct: 139 VLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVLTR 198

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  L+    E + K +DV + +LR ++   A     I TV G GY L
Sbjct: 199 GQIIERLWGPDYEGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRL 248


>gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family
           [Thermincola sp. JR]
 gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family
           [Thermincola potens JR]
          Length = 237

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 2/232 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA ++  + K  N+ + V   G  G E+ +   +D IILD  L    G 
Sbjct: 1   MRLLLVEDEKRLADALAYIFKKNNYGIDVAYDGITGQEMAETGIYDLIILDRMLPKKEGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ LR   I TPV +L+   ++ED+V GL +GADDY+ KPF  EEL+ARIRA+ RR S
Sbjct: 61  SVLKHLRSIGIKTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARRQS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G L+++     +     ++ LT KE Q++EL        +TKE  L+ ++
Sbjct: 121 ENFHSEKIRVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
               E E+  ++++I  LRKK+      K  +ETV G GY L+E       E
Sbjct: 181 GLDSEVELNNVEIYIHYLRKKIVPE-KSKVRLETVRGVGYCLKEEPNVSQAE 231


>gi|225872589|ref|YP_002754044.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
 gi|225791970|gb|ACO32060.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196]
          Length = 232

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  +A  ++  L+S  + + +     + +   +       +LD+ +    G +V
Sbjct: 5   IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGLDV 64

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R LR   A  S P+  ++  +   D+V GL+ GADDYI+KPF   EL+AR++A++RR  
Sbjct: 65  CRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRRFE 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    SLI   D+ ++  A  ++V+G     T  E+++++ L+       +++  L+ ++
Sbjct: 125 RPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + +DV++ ++R+K+ +      +++TV G GY   
Sbjct: 185 GDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227


>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 232

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  + + I   L+   F V +   G + +          +ILD+ L ++ G EV
Sbjct: 7   ILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIMLPNMDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R  K + P+ +L+ +    DK+  L  GADDY++KPF+  EL+AR++A++RRS   
Sbjct: 67  CRRIRQ-KSTVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRRSHWA 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +   G L ++ + K V   G  + L+  E+ +++ L+L      T E  L 
Sbjct: 126 FDEVPVSAGVKRFGGLEIDFEQKQVWRDGDPVKLSPTEFHLLQELALHPGKIFTHEALLR 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E + + V+I +LR+KL        +I T  G GY +
Sbjct: 186 RVWGVEYRSESEYLRVYIGRLRRKLEANPSRPTHIMTEPGIGYYM 230


>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ + + + + L++  + V++TD G DG+++ +  + + IILDL L  + G E
Sbjct: 5   KILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHMDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L+         V +++  S   D+V G + GADDY+ KPF+  EL+ RI+A++RR 
Sbjct: 65  VCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAVLRRE 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    + +     L  + +A   +V G  + LT  E ++++ +   +   LT+E  LN
Sbjct: 125 YRSDSGVERIWKHKGLEFDFEAMEFKVDGINVSLTATEMKLLQEMVQNEGRVLTRERLLN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++    E   + +D  + +LR KL   +   + I+T  G GY  
Sbjct: 185 NVWGYEFEGYARTVDTHVRRLRAKLEPYS---DLIQTARGLGYKF 226


>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
 gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +E+ L +E +NV+    G++ +E+ +  E + ++LD+ + D+ G EV
Sbjct: 5   ILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            +  R  K S P+ +LS      D++ G+ +GADDY+ KPFN  EL  RIRA++RR+   
Sbjct: 65  CKRARE-KYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFL 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I    + ++     V +  + I LT +E++++ LL+  +    + E    
Sbjct: 124 NTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  R       + V + +LR K+     G   I TVWG GY + +
Sbjct: 184 KVWKERYYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGYKIEK 230


>gi|170738625|ref|YP_001767280.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192899|gb|ACA14846.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 228

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   G DG  L +   +D +++D  L  + G 
Sbjct: 1   MRLLIIEDDREAASYLAKAFREAGHVADLAADGLDGYALAREGSYDVLVVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   + TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 61  SLIRSLREQGVETPVLILSALGQVDDRVKGLRAGGDDYVPKPYAFSELLARVEVLARRRG 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L H+
Sbjct: 121 GGAGEPTAYRVGDLELDRLSHRVTRGGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   +P+  +IDV + +LR K+         I TV G GY++R   +
Sbjct: 181 WDYHFDPQTNVIDVHVSRLRAKVDKGFDRP-MIHTVRGAGYMVRAGGE 227


>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
 gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 229

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +K+E +       G + +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  IEVIKEVRKDS-QLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +       ++  G L++N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENNVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKIE 227


>gi|34580940|ref|ZP_00142420.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
 gi|28262325|gb|EAA25829.1| transcriptional activator protein czcR [Rickettsia sibirica 246]
          Length = 237

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 166/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI G 
Sbjct: 1   MRVLLIEGEPKMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+ G  SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +SVNLD ++VEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AA G++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAACGRDYIDTVWGRGYMLKE 223


>gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 238

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+  A  +    +     V     GEDG+      ++D +++D  L    G 
Sbjct: 13  MRLLLVEDDQDAADYLRKAFREAGHVVDHAADGEDGLAYALDGKYDVLVVDRMLPRRDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR    +TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 73  SLVAELRGRGDATPVLILSALGQVDDRVVGLRAGGDDYLPKPYAFTELLARVEALSRRGA 132

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 133 PQAAETVYRVGDLELDRLAHRVARGGKEIPLQPREFRLLEYLMRHAGQVVTRTMLLENVW 192

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV + +LR K+         I TV G GY++R
Sbjct: 193 DYHFDPQTNVIDVHVSRLRSKIDKGFDVP-LIHTVRGAGYMVR 234


>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
 gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
          Length = 225

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 2/224 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DDK +   +   L+ E F V     GE   ++    +    ++DL +  + G
Sbjct: 1   MKQILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS
Sbjct: 61  FELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G L+++  +  +++    + +  KE++++  L+       T+E  +  ++
Sbjct: 121 TQASEVKIKIGQLTIDQKSYGIKIGNRELMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + IDV I +LR        G   I TV G GY L E
Sbjct: 181 KRDYDGSDRTIDVHIKRLRDHFDEEKAGIR-ITTVRGVGYKLEE 223


>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
          Length = 271

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  
Sbjct: 46  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 105

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 106 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 165

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 166 ADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 225

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 226 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 268


>gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 241

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 17/240 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +   L    + V +   GE+  +  K  E+D ++LD+ L  + G 
Sbjct: 1   MRILVVEDDVQLAEMLMEALTDRQYVVDIAQDGEEAWDCIKVLEYDLVVLDITLPKLDGV 60

Query: 61  EVLRALRV----------------AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFN 104
              + LR                   I+ PV +L+   ++ DK+ GL +GADDY+ KPF 
Sbjct: 61  SFCQRLRSPMVGRSPSPTSRHTLSRNIAIPVLMLTARDTLGDKITGLDAGADDYMVKPFE 120

Query: 105 KEELVARIRAIVRR-SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
             EL+AR+RA++RR S   + S    G L +N     V      +HLT KE+ ++EL+  
Sbjct: 121 MPELMARVRALLRRNSAATSSSDFGWGSLRLNSSTYEVTYADQPLHLTPKEFALLELMVS 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                L++   +  ++   D P  + +   I  LR KL +     ++IETV G GY L++
Sbjct: 181 SGRRVLSRAGIIERIWSLDDPPSEETVKSHIKSLRYKLKDVGAADDFIETVHGLGYRLKQ 240


>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 245

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 241


>gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
 gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
           SK121]
          Length = 234

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  + +S+E  L+   F+      G   +         A++LD+ +  + G  
Sbjct: 9   RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR      P+C+LS  SS+ D++ GL++GADDY++KPF   ELVAR+RA++RR+  
Sbjct: 69  VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 128

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S    I  G L+V+L      + G RI LT +E+ ++ +L+      L++   L  +
Sbjct: 129 ATPSVDHPITVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 189 WGYDFAADTNVVDVFVTYLRKKLEVD-GAPRVIHTVRGVGFVLR 231


>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
           13032]
 gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
 gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Corynebacterium glutamicum ATCC 13032]
 gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 241

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  I L L    F+      G    +       D +ILDLGL  + G E
Sbjct: 15  RVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGLPGLDGLE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R       + +L+   S  D++ GL+ GADDYI+KPFN  ELV RI++++RR R 
Sbjct: 75  VCKRIRAF-TDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRK 133

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +++     +  G + ++  A  V V+G  + LT  E+++++ L  +    +++   ++
Sbjct: 134 IDETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVS 193

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++D     + +I+DV I  LR+KL   A G ++I+T+ G GY +
Sbjct: 194 QVWDTTWVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGYRM 238


>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+  +  ++   L  E + V     GE  +EL +    D +ILD+ L  + G E
Sbjct: 10  HILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   + +  + +L+   ++ D+V GL+ GADDY+ KPF  EEL+AR++A++RR + 
Sbjct: 70  VCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQP 129

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+   DL ++   +        I L+  EY+++ L        LT+ + +  ++
Sbjct: 130 TEVHGELLCFADLELDTATRQAHRGQRMIDLSTTEYELLTLFLRNPRVVLTRGLLMERIW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E    +++V+I  LR KL    G +  ++T+ G GYVLR
Sbjct: 190 GNDFEGSPNVLEVYIGHLRNKLERE-GEQRLLQTIRGTGYVLR 231


>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
 gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ ++A  I + L+   F    ++ G         +  D I+LD  L    G +
Sbjct: 5   RVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQSGLQ 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +E++ARIRA++RR 
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L+++     V  QG+ + +   E++++  L        ++   L+ +
Sbjct: 125 APEVVTERVEIGELALDTATHRVTWQGNALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR    +       +ETV G GY L
Sbjct: 185 WGDHVYIEERTVDVHVKRLR---ESLGAASPMVETVRGAGYRL 224


>gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
 gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family
           [Kosmotoga olearia TBF 19.5.1]
          Length = 226

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ LA  I+  L+ E F V V    E   +     +FD I+LD+ L +  GF+
Sbjct: 3   KILLVEDDETLAMGIKYALEQEAFLVEVATELESARKRIDEKDFDLILLDVMLPNGNGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL+ GADDYI+KPF  +ELVARIRA +RR  G
Sbjct: 63  LCKEIRT-YSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +++G + +++  + + V+    HLT  E++++  L       LT++  L +++
Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   D  +   + V I KLR+K+ +      +I TV G GY  RE
Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIEDDPSKPEHILTVRGLGYRWRE 226


>gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 245

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|17548710|ref|NP_522050.1| response regulator for cobalt zinc cadmium resistance transcription
           regulator protein [Ralstonia solanacearum GMI1000]
 gi|17430959|emb|CAD17640.1| probable response regulator for cobalt zinc cadmium resistance
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 224

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      +   L    F   +   G DG+     +++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR  K +TPV  L+    + D+++GL+ GADDY+ KPF   ELVAR+  I+RR  
Sbjct: 61  QVIRELRRRK-TTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL+++   + V   G RI LT KEY ++ LL+ R    L++ +  + ++D
Sbjct: 120 MRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +    ++DV I +LR K+ +       I T+ G GYVL   A+
Sbjct: 180 VNFDSNTNVVDVAIRRLRAKV-DDPFEHKLIHTLRGMGYVLDTVAR 224


>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
 gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
          Length = 245

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E     + + V   +  E    L     F+ ++LDL L    G  
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR +    P+ +L+       +++GL+ GADDY++KPFN  EL+ARI+A++RR   
Sbjct: 73  ACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQAP 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L       LT++  
Sbjct: 133 VVPGAPGAEDESVSFGDYELSLATRELKKGEEVHMLTTGEFAVLKALVQHAREPLTRDKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 193 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 243


>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
 gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2143]
          Length = 236

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I + L    FN        +   +    + D ++LD  L    G E+
Sbjct: 6   ILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGGSGIEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           LR LR  +     PV +L+  +  ++K++GL  GADDYI+KPF   E+++RI+A++RR S
Sbjct: 66  LRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRRTS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S+I    L +++ +  V +    + +   E++++      +    ++   L+H++
Sbjct: 126 TGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEFRLLSFFMTHQERAYSRGQLLDHVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +  G     ++TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGYRF 228


>gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
 gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071]
 gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636]
 gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679]
 gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317]
 gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039]
 gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162]
 gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
          Length = 229

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 1   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 61  MQVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226


>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  +   +E  L     +V     G  G+   +   FDA++LD+ +  + G E
Sbjct: 4   RVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMPGMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R  K   PV +L+      D+V GL+ GADDY+ KPF+  EL+AR+RA++RRS+ 
Sbjct: 64  VCKRIRA-KSRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRRSQP 122

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A    + +G +S+++  + V V+   + LTG E+ ++  L  R    + ++  L     
Sbjct: 123 SAVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVALVRRAGRVVPRDALLGEAGR 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                  + +DV I  LR+KL +   G   I+TV G GYV  +   
Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDV--GTRLIKTVRGVGYVFAKEGP 226


>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 229

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +  +L+  ++     +  +  I        D I+LD  L    G +
Sbjct: 4   RILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGSGIQ 63

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+        PV +L+ +   ED+VRGL+ GADDYI+KPF+ +EL+ARI+A++RR 
Sbjct: 64  FIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMRRI 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A + +I    LS++  +  V  +   + +   EY+++           ++E  LNH+
Sbjct: 124 SPMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L   +G    ++TV G GY  
Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALE-VSGHDRMVQTVRGTGYRF 225


>gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
          Length = 236

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R      P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIRRESG-VPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
 gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
           D21]
          Length = 234

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ L   +    K E F VY+   G + ++  K    D ++LD+ +  I GFEV
Sbjct: 6   ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R  R      P+  LS      D++ GL  GADDY+ KPF+  EL+AR+++ +RR RG 
Sbjct: 66  CRRARQF-TDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRGE 124

Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             S +      DL ++ +   V  +   I LT  E+ ++++L+   +   ++   L    
Sbjct: 125 VLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKAM 184

Query: 180 DG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G   E   + ID  I  LRKKL        YI TV+G GY  +
Sbjct: 185 GGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQ 228


>gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
 gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
          Length = 233

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +IE+ L  E + V     GE+ I+  K    D +I+D+ +  + G  
Sbjct: 5   KILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHVDLLIMDVMMPRLDGIR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R    S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR ++ +RR   
Sbjct: 65  ATLKIREEN-SLPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRRYTQ 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   + +   G LS+N + K V V G  + LT  EY ++ LL   +    + +  
Sbjct: 124 LGSTVQDEKKEVYEVGGLSINDELKEVTVDGESVRLTPIEYNILLLLVKNQGKVFSIDQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 184 YENIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 232


>gi|90021593|ref|YP_527420.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951193|gb|ABD81208.1| Heavy metal response regulator [Saccharophagus degradans 2-40]
          Length = 226

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 127/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+      ++  L    F V +   G DG  L     FD +ILD+ L D+ G+
Sbjct: 1   MRLLVVEDEVKTGDYLQQGLSEAGFMVTLARNGLDGHHLAMTETFDLLILDVMLPDVGGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R +    PV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  RIVQSIRESGCQAPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRST 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++L        G +I+L+ KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 APVLADQITVADLILDLPKHRALRGGRKINLSHKEFCLLELLARRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +       I TV G GY L  + +DE
Sbjct: 181 DMNFDSDTNVIDVAIRRLRSKI-DEGFEPKLIHTVRGMGYKL--DVEDE 226


>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
          Length = 230

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI-PGFE 61
           IL+++D+  +   I + L+   ++    D  +D   +    + D I+LD  L     G E
Sbjct: 6   ILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPGGTSGIE 65

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  +     P+ +L+     ++K++GL+ G DDYI+KPF+  ELVAR++A++RR+
Sbjct: 66  LARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLRRA 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++S I  G L ++  +  V + G    +   EY++++     +    T+   L+ +
Sbjct: 126 GPADSESPIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G    E + +DV I +LRK L  A      ++TV G GY     A
Sbjct: 186 WGGNVYVEERTVDVHIRRLRKALGEAYEN--MVQTVRGTGYRFSTQA 230


>gi|238783257|ref|ZP_04627282.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
 gi|238715850|gb|EEQ07837.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia bercovieri ATCC 43970]
          Length = 251

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 135/228 (59%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 26  MRLLLVEDEEKTSSYINRALSELGFTVDVAANGTDGLYLALEYDYDTIVLDVMLPGMDGY 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 86  SVLQGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 144

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 145 SDGADVTQLHIDDLHLDLLARRVTRGGARLELTAKEFALLSLLARHQGEILSKMMIAEQV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +++V I +LR K+ +A      + TV G GYVL    +
Sbjct: 205 WDMNFDSDANVVEVAIKRLRAKM-DAPYPVKLLHTVRGMGYVLETRPE 251


>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 241

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD ++A  +E+ L +E + V V + GE G+ L +    D II+D+ L  + GFE+
Sbjct: 19  VLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGFEL 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  + + PV +LS   +  DKV GL+ GA+DYI+KPF+  EL+AR++A++RR    
Sbjct: 79  LRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRRDAIA 138

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD+ +N   + V      I LT  E+ ++  L+      L++E     ++ 
Sbjct: 139 RADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRVLSREQIQAKVWG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  + ID FI +LR KL   A    ++ TV G GY    
Sbjct: 199 PTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241


>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 229

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA ++   L    + V   D GED         +  ++LD+ L  + G 
Sbjct: 1   MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K   PV IL+   +++D+V GL  GADDY++KPF+  E  AR+RA++RR +
Sbjct: 61  AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L  +L+A  +      + L+ +E  + E+L  R+   +TKE  ++ L+ 
Sbjct: 121 FDAGKSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             D+     I+V++ ++RKKL         I TV G GY+L ++ + E  E
Sbjct: 181 WGDDGGSNAIEVYVHRMRKKLEPYNIT---IRTVRGMGYLLEKSGEKERSE 228


>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
 gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
          Length = 259

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 136/236 (57%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  ++L L+ EN+   V + G  G++      FDAI+LDL L D+ G E
Sbjct: 24  KILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNGLE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 84  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 142

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q  +   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 143 EKEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNNVVSR 202

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D
Sbjct: 203 DELLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGRPSYIKTVRGTGYMVRDEDDD 257


>gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 225

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED++A+   +E   KS+ F +   + GE+G+ L   Y++D  I+D+GL  + G 
Sbjct: 1   MKLLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ LR    + P+ IL+     +DKV GL++GADDY+ KPF+ EEL AR  A++RRS 
Sbjct: 61  EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G +++N   K+V + G  + LT  EY  +E L+L     ++K +   HLY 
Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +  +I+VFI +LRKKL    G    I+TV G GY     A
Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPD-GDLKPIKTVRGLGYRFAPEA 224


>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 249

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 71/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+   + + L+   ++V   + G  G  L      D I+LDL L  + GF 
Sbjct: 4   RILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFT 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA+++R+
Sbjct: 64  VCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRT 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++  G L++  +          + LT  E++++  L  R   T+     
Sbjct: 124 DRIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L  ++    + +++ I V I  LR KL        YI+TV+G GY L   A+ E  ++ +
Sbjct: 184 LKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLELPAETELHQHAD 243

Query: 235 T 235
            
Sbjct: 244 Q 244


>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
 gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Oceanicola granulosus HTCC2516]
          Length = 230

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+ A    +   L++E F     + GE  + L +    D ++LD  L ++ G E
Sbjct: 8   HVLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIE 67

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L  R       + +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 68  VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 127

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++   D  ++ +   V      + L   E++++     +     +++  L+ +
Sbjct: 128 RPSTVGQVLTFEDFVLDAETHRVTRADKPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV I +LRK L  A GG + + TV G GY L
Sbjct: 188 WGRDIYVDTRTVDVHIGRLRKAL-TAHGGSDPVRTVRGAGYAL 229


>gi|22126192|ref|NP_669615.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45441652|ref|NP_993191.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108807379|ref|YP_651295.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|108811644|ref|YP_647411.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|149366068|ref|ZP_01888103.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165926520|ref|ZP_02222352.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938800|ref|ZP_02227354.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166009328|ref|ZP_02230226.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166210680|ref|ZP_02236715.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401418|ref|ZP_02306915.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420362|ref|ZP_02312115.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424664|ref|ZP_02316417.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170024423|ref|YP_001720928.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis YPIII]
 gi|218929111|ref|YP_002346986.1| transcriptional activator [Yersinia pestis CO92]
 gi|229894710|ref|ZP_04509890.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|229897410|ref|ZP_04512566.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229898052|ref|ZP_04513203.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901922|ref|ZP_04517043.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|270490895|ref|ZP_06207969.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294503927|ref|YP_003567989.1| transcriptional activator [Yersinia pestis Z176003]
 gi|21959158|gb|AAM85866.1|AE013833_4 putative 2-component transcriptional regulator [Yersinia pestis KIM
           10]
 gi|45436514|gb|AAS62068.1| transcriptional activator [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775292|gb|ABG17811.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|108779292|gb|ABG13350.1| transcriptional activator [Yersinia pestis Antiqua]
 gi|115347722|emb|CAL20637.1| transcriptional activator [Yersinia pestis CO92]
 gi|149292481|gb|EDM42555.1| transcriptional activator [Yersinia pestis CA88-4125]
 gi|165913163|gb|EDR31786.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921741|gb|EDR38938.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165991883|gb|EDR44184.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166207860|gb|EDR52340.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962057|gb|EDR58078.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049114|gb|EDR60522.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056546|gb|EDR66315.1| DNA-binding heavy metal response regulator [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750957|gb|ACA68475.1| two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia pseudotuberculosis YPIII]
 gi|229680818|gb|EEO76913.1| transcriptional activator [Yersinia pestis Nepal516]
 gi|229689093|gb|EEO81158.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229693747|gb|EEO83796.1| transcriptional activator [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229702183|gb|EEO90202.1| transcriptional activator [Yersinia pestis Pestoides A]
 gi|262361952|gb|ACY58673.1| transcriptional activator [Yersinia pestis D106004]
 gi|262365909|gb|ACY62466.1| transcriptional activator [Yersinia pestis D182038]
 gi|270339399|gb|EFA50176.1| transcriptional activator protein Irlr [Yersinia pestis KIM D27]
 gi|294354386|gb|ADE64727.1| transcriptional activator [Yersinia pestis Z176003]
 gi|320015323|gb|ADV98894.1| transcriptional activator [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 230

 Score =  260 bits (667), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 86/231 (37%), Positives = 134/231 (58%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +       + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DTPYPVKLLHTVRGMGYVLETRPDRQT 229


>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 285

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  
Sbjct: 60  RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 119

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 120 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 179

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 180 ADRRSDSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRV 239

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 240 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 282


>gi|257887006|ref|ZP_05666659.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257898161|ref|ZP_05677814.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|293377839|ref|ZP_06624024.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
 gi|293570561|ref|ZP_06681613.1| transcriptional regulatory protein ResD [Enterococcus faecium E980]
 gi|257823060|gb|EEV49992.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257836073|gb|EEV61147.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|291609349|gb|EFF38619.1| transcriptional regulatory protein ResD [Enterococcus faecium E980]
 gi|292643549|gb|EFF61674.1| response regulator receiver domain protein [Enterococcus faecium
           PC4.1]
          Length = 238

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++        +D I LDL L  + 
Sbjct: 1   MNILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDAFLENPQHWDMITLDLNLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
           S                 I T    +N   +   +    I  LT KE+ ++  L+ +   
Sbjct: 121 SELAEAREEAAVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKPRQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 VFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 236


>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 237

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F+V     G++ + L   ++ D ++LD+ L D+ GF+
Sbjct: 7   RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + LR  ++  PV  L+  S++ED++ GL +GADDY+SKPF+ EE+V RIRAI+RRS+ 
Sbjct: 67  VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQV 126

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G    ++   DL ++ DA  V      I L+  E++++  L +     ++K   L+
Sbjct: 127 EPYPGADSGVLRYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++     + +I++ ++  LRKK+   +     I T+ G GY LR
Sbjct: 187 RVWNYDFGGDGRIVESYVYYLRKKV--DSRAPALIHTIRGVGYTLR 230


>gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans
           C54]
          Length = 220

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA  +   L+   + V     G D   + +   +D ++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLAAQLAEALRLAGYTVDAAADGADAHYMGEVETYDVVVLDLGLPVMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+  S+  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  TVLKQWRAAGRGMPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRHS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G L ++       V G  ++LT  E++++ +L       +++   + H+Y 
Sbjct: 121 NHASAQWRCGPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDVFI +LRKKL         IETV G GY L
Sbjct: 181 QDHDRDSNTIDVFIGRLRKKLPADT-----IETVRGLGYRL 216


>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 226

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 6/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  L   +   L+ E++     D G D ++  +    D +ILD+ +  + GF V
Sbjct: 6   VLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGFHV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    S PV +L+   +  DKVRGL++GADDY+ KPF+ +EL+AR+ A +RR+   
Sbjct: 66  CERIRQKH-SLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V G+L ++ D + V V G  I LT +EY+++  L+       ++E     ++ 
Sbjct: 125 KIRGRRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVWT 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++ +D  I  LR KL+   G   +IETVWG GY  
Sbjct: 185 DTAASSLRTVDTHIKTLRLKLN---GAGRFIETVWGVGYKF 222


>gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)]
 gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)]
          Length = 224

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
 gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 123/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKIVRKDS-RVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      +  G L +N D+  V    G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 DNAVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 226

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+K ++  I++ L  E + +     G + +E  +  E+D I+LD+ + ++ G E
Sbjct: 5   RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           V R +R      P+ +L+  S I DKV GL +GA+DY+SKPF  EEL+ARIR   R ++ 
Sbjct: 65  VCRRIRQFS-HVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKAL 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    I   ++ ++     V   G  I LT  EY ++++L + KN  LT++  +  ++ 
Sbjct: 124 KNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +  ++DVFI  LR K+ +       I T+ G GYV+++N
Sbjct: 184 YDYSGDTNVVDVFIRYLRSKI-DNERQDKLITTIRGVGYVIKDN 226


>gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus
           RUH2202]
          Length = 228

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEIKIATYLVKGLKESGYQAECIHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 66  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L A  V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 125 YLQENELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 185 INFDTDTNFIDVAVRRLRSKI-DEGYELKLIHTIRGLGYKI 224


>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 240

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + LK+  F  Y    G D + +    + D +I D+ +  + G+E+
Sbjct: 14  ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGYEL 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R      P   LS  S   DK+ GLQ GADDY+ KPFN  E+V+R++A+ RR    
Sbjct: 74  LKKIRHIS-EVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDVF 132

Query: 119 SRGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S+G  Q+   I  GD+ ++L +  +   G +  +T  E++++ LL        TK     
Sbjct: 133 SKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIYE 192

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           H++      +  +I V+I KLR+K+ +      Y+ T+ G GY   +
Sbjct: 193 HVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239


>gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
 gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM
           16841]
          Length = 251

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  +       LK+  + V   + G D  +  +      I+LD+ L +  G ++
Sbjct: 32  IYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPNEDGLDI 91

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R  K +   P+ +++  +S  DKV+GL  GADDYISKPF   EL++R++A++RR+ 
Sbjct: 92  LTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLRRTT 151

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S I   ++ V+ D   V V G    LT KE+++++ L + K   L+++  +N ++
Sbjct: 152 NAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIMNQVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E + +D+ I  LR+KL  A     +I+TV   GY++ 
Sbjct: 212 GFDYEGESRTVDMHIKTLRQKLGEAGS---HIKTVRNVGYMVE 251


>gi|153938445|ref|YP_001391244.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|168180510|ref|ZP_02615174.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|152934341|gb|ABS39839.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|182668847|gb|EDT80825.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|295319280|gb|ADF99657.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 233

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S E+ N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R    + P+ +LS  +   DK+ GL  GADDYI+KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRERN-NIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119

Query: 117 RRSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus helveticus H10]
          Length = 240

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTT 168
                       + +  I T  L ++ D + V       + LT KE+ ++  ++ +    
Sbjct: 124 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 237

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L SE + V     G +G++     ++  ++LD+ L  + GF+
Sbjct: 4   RILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      PV +L+      D++ GL+ GADDY+ KPFN  ELVAR+RAI RRS  
Sbjct: 64  VLRRIRQ-NTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GD+S++L A+TV      + LT  E+ ++E L  +    ++++   
Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                       + IDV +  LRKKL  AAGG+  I++V G GY+
Sbjct: 183 RQALGREFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGYI 227


>gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 225

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V +   G +G+ +    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED+++GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR KL +    +  + T+ G GYVL     +
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFEQKLLHTIRGMGYVLESRGAE 225


>gi|94314717|ref|YP_587926.1| winged helix family two component transcriptional regulator
           [Cupriavidus metallidurans CH34]
 gi|93358569|gb|ABF12657.1| two component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 242

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 14/245 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------FDAIILDLG 53
           MR+LL+EDD  +  S+++ L+ E F V     G+ G++             +D ++LDLG
Sbjct: 1   MRVLLVEDDAMIGESVKVALRQEGFTVDWVRDGDAGLDAASDQHGPRADGGYDVVLLDLG 60

Query: 54  LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           L   PG +VL+ LR   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+ 
Sbjct: 61  LPRRPGLDVLKTLRARNVRTPVLILTARDAVADRVAGLNAGADDYLIKPFDLQELAARMH 120

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+VRR+ G A+ ++  GD+ +N   +     G  + L+ +E+ ++  L  R     +   
Sbjct: 121 ALVRRAEGRAEPVLRYGDIMLNPATREATQAGASVRLSAREFALLSALMARPGKVWSVPQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDETCE 231
               LY   DE     ++V+I  LR+K   A      I  + G GYV+     A+ +T  
Sbjct: 181 LQERLYGWDDEVGSNTVEVYIHALRRKFGAA-----LIRNIRGVGYVIPAESGAEQDTKG 235

Query: 232 YLETA 236
             E A
Sbjct: 236 GPEGA 240


>gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
 gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus
           NA1000]
          Length = 242

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 78/236 (33%), Positives = 133/236 (56%), Gaps = 12/236 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA--------IILDL 52
           M IL++EDD  +A  +E  LK+E + V V   G  G+E  +  +           I+LDL
Sbjct: 1   MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L  + G EV + LR + + TPV +L+ + +++D+V GL++GADDY+ KPF+ EEL+ARI
Sbjct: 61  MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120

Query: 113 RAIVRRSRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            A++RRSR     A   +  G++ ++     V   G  + LT +E  ++EL        L
Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++E  L++++   ++P   ++DV++ +LR K+ +     ++I TV G GY L  + 
Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKI-DPPLASSFITTVRGLGYRLEPDP 235


>gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
 gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
           DSM 15981]
          Length = 238

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDDK +   +E+ L+S+ + V+    G +G++L +  E    I+D+ +  + G  
Sbjct: 7   RILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEVQLAIVDVMMPRMDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR      PV  LS  S   DK+ GL  GADDYI+KPF   EL+AR+ + +RR R 
Sbjct: 67  MVVKLREM-YDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYRR 125

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         +   G L +N D   V V    + LT  EY+++ LL          
Sbjct: 126 FMERLNRQQPENSKIHRLGGLEINEDTVEVTVDDKPVKLTPIEYKILLLLVQNPGRVFPA 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +++ R       + V I  +R+K+        Y++ VWG GY + + A
Sbjct: 186 DEIYERVWNER-AINTDTVMVHIRNIREKIEVNPKEPKYVKVVWGVGYKIEKQA 238


>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 234

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 111/231 (48%), Gaps = 4/231 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD   A  I   L+ E   V V   G   +        D ++LD+ +  + G + 
Sbjct: 5   VLVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVMMPVMSGLDA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR       V +L+  S+ ED + GL  GADDY++KP++  EL+AR+R ++RRSR  
Sbjct: 65  CRALRAES-DVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSRRD 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G ++V+     V V G  +  T  E+Q++  L+ +    LT+   L H++
Sbjct: 124 PDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEHIH 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                   + IDV +  LR+KL         + TV+G GY L     D + 
Sbjct: 184 GMSRFITERTIDVHVKNLRRKLEPDPRRPVRLVTVYGVGYKLVGKTDDRSA 234


>gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 225

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   A  +   L+ E   V     G D +       +D +ILD  L  + G 
Sbjct: 1   MRILLLEDDANTAAYVSKGLEEEGHTVDHLADGRDAVAQAVGETYDVVILDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R A    PV  L+ +  ++D+V GL +G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  AIIKEIRSAGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPH 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL ++L ++ V   G  I L  +E++++E+L   +   +T+ M L  ++
Sbjct: 121 TIGEETRLKVGDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P+  +++  I +LR K+ +       I T+ G GY + + A
Sbjct: 181 SFHFDPKTSVVETHISRLRAKI-DKPYDTELIHTIRGCGYTVNDGA 225


>gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a]
 gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a]
          Length = 250

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 16/241 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD A+  S+E  L+ E + V     G D ++     + D ++LD+ +  I G E
Sbjct: 9   RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQPDIVVLDVMMPRIDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL------------- 108
             R LR      PV +L+    + D+V GL  GADDY+ KPF  EEL             
Sbjct: 69  TCRQLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALTRRAAL 128

Query: 109 --VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
              A            A S++  G +S++  ++ V      + LT  E++++EL      
Sbjct: 129 AARAAGAGGAGGPGALADSVLRYGGVSLDQASRQVTRGERELTLTKTEFELLELFLSHPR 188

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L++ M +  ++     P    ++VF+  LR+KL  A G    + TV G GYVLRE A 
Sbjct: 189 QVLSRSMIMERVWGYDFGPTSNSLEVFVSYLRRKLE-AGGEPRLLHTVRGVGYVLREPAG 247

Query: 227 D 227
           D
Sbjct: 248 D 248


>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thioalkalivibrio sp. HL-EbGR7]
          Length = 226

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+A+R++    PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R+++RR +
Sbjct: 61  ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+V + +LR K+ +       I TV G GYVL   
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DEPFEPKLIRTVRGMGYVLEAP 223


>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
 gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor owensensis OL]
          Length = 217

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++RS+
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I    L ++  A+ V V+G +++LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KSSSDEI----LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I  LR+KL      ++YI+TV G GY   
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDYIKTVRGYGYKFE 214


>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
 gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 237

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ +       +   IILDL + +I G
Sbjct: 9   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 69  MDVIKRVRKDS-DIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 127

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G        ++  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 128 QGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G+  I+TVWG GY + ++
Sbjct: 188 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 237


>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 121/227 (53%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +  +IE+ LK+E+  V+    G++ +++ +  +   I++D+ +  + G  
Sbjct: 5   QVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIMMPKMDGMT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR   
Sbjct: 65  ATFQIRQKK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRFTN 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    +  I    L++N   K V + G+ + LT  EY+++ELL   K    + E    
Sbjct: 124 LGSAQITEDEIQVRGLTLNKSTKNVAIDGNEVRLTATEYKILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++          + V + ++R+K+        Y++ VWG GY + +
Sbjct: 184 RVWREPYMNAENTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKIEK 230


>gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 225

 Score =  260 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL  GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S I  G L ++L+ K   V    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G DE +  +I+V + +LR+KL    GGK  IETV G+GY+  E
Sbjct: 181 GDDERDPNVIEVLVGRLRRKLEAMLGGK-LIETVRGQGYMFNE 222


>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
 gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
          Length = 253

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   +DV I +LR K+ +    +  I T+ G GY       +E
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKNNE 225


>gi|331698935|ref|YP_004335174.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326953624|gb|AEA27321.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 225

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFDTAVVGDGTKALPAVRELRPDVVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 64  VCRAIRSESG-VPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARIRARVRRVEN 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GD+ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEQLSIGDVDIDVPAHQVTRGGVPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 221


>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 9/230 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL+EDD  +   I    K E ++V+  + G   +EL +    D I+LD+ + ++ 
Sbjct: 1   MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+ V R +R  K   P+ +++  +  ED++ G + GAD+Y++KP +   LVAR  A+++R
Sbjct: 61  GWSVCRRIRE-KSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKR 119

Query: 119 SR---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +    G    L+  G+LSVN +A TV V G  I+L+ KEY ++  L       L+++  L
Sbjct: 120 TERTVGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYIL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           N ++      +++ +D  I KLR KL +A      I TV   GY     A
Sbjct: 180 NAVWGYEYLGDLRTVDTHIKKLRAKLGDAG---KLIATVIRSGYRFESEA 226


>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD+ LA  +   L +E + V       +G +  +   FDA+ILD+ L D  GFE
Sbjct: 4   RLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPDGDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR R 
Sbjct: 64  LCRQIRT-HSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ +  G L ++  ++ V + G    LT  ++ ++   +      L++E  ++ +   
Sbjct: 123 PQEARLDFGRLQIDPGSRVVRLDGVERRLTSHQFDLLLAFATHAGRVLSRERLMDLVKGE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +   + IDV + +LR  + +       + T+ G GYV    A+++  E
Sbjct: 183 DLDAFDRSIDVHVSRLRALIEDDPRHPRRLLTIRGAGYVF---AREQDAE 229


>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 220

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ ED+  +   +  +L+S  ++V     G + ++L +   FD +ILD+ +  + GFE
Sbjct: 3   HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R     TP+  L+ +   +++V+G   G DDYI+KPF+   L+ RI A++RR R 
Sbjct: 63  VAQQVRKTS-QTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + +  +   ++++   +  V + G+ + LT KE+Q++ LL       L +E  +  L+  
Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWGF 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +D  I  LRKK+        YI+TV G GY L 
Sbjct: 182 DAFGDTRFLDTHIKNLRKKI-----NVPYIQTVKGVGYKLE 217


>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL ED+  L   I   L+   F V     G + + L    +   IILDL +  + GFE
Sbjct: 7   RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R   I  P+ +L+ + +  DKV     GADDY+ KPF  +EL+ARIRA++RRS+ 
Sbjct: 67  VCQRIREQSI-VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRRSQW 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A      G+L ++L+A +V   G  + LT  E+ ++  L    N  LT  M L H
Sbjct: 126 SVQPQASGTKRYGELEIDLEAHSVRRAGLDVRLTPTEFALLAYLITHPNKVLTHRMLLQH 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  +   E + + V+I +LR+KL        ++ T  G GY   
Sbjct: 186 VWGDQYRDEAEYLRVYIGRLRRKLEADPSNPRHLLTEAGIGYRFV 230


>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LD+ L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A++RRS 
Sbjct: 64  CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRSA 123

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                      G + V++DA    V G  + LT  E++++  L  R     ++E  L  +
Sbjct: 124 ARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLEDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++   E E + +D  + +LR+KL     G++ +ETV G GY L + ++
Sbjct: 184 WEMSSEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228


>gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
 gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25]
          Length = 232

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+      ++  L    + V +   G DG+      E+D I+LD+ L  + G++
Sbjct: 4   KILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIMLPKLDGWQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR + I TPV +L+    +ED+VRG + GA+DY+ KP+   EL+ARI+ + R    
Sbjct: 64  VLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHIS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +   +   DL +++  +     G  + LT KEY ++ELL  +    L++    + 
Sbjct: 124 AQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASL 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D   + +  +IDV + +LR K+ +    K  I TV G GY L E+
Sbjct: 184 VWDMNFDSDTNVIDVAVKRLRSKV-DKPFDKPLIHTVRGMGYKLEES 229


>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
 gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Leuconostoc citreum
           KM20]
          Length = 229

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  I L LK E + V     G  G++      +D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLRESK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +S      +I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|74318372|ref|YP_316112.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057867|gb|AAZ98307.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 235

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I + +DD+ +   +   L S+ + V   +       L      D ++LD  +    G  V
Sbjct: 6   IYVTDDDRGIRELVAEYLTSQGYAVETAEDAAALDRLLAARLPDLVVLDWMMPGEDGLSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +LS      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR    
Sbjct: 66  ARRLRARPGFPPIIMLSAKGEDIDRIIGLEVGADDYLPKPFNPRELLARIRAVLRRQPTA 125

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A+       +  G  SVNLDA+ +   G  I LTG EY+++E+     N  L+++  ++ 
Sbjct: 126 AEPTESARLVRFGPFSVNLDARMLSRDGVEIPLTGGEYELLEIFVRHANRALSRDWLMDQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L     +P  + IDV + +LRKK+ +      YI T  G+GY+     K
Sbjct: 186 LRGFERDPFDRSIDVRVNRLRKKIEDDPTNPAYIRTQRGQGYLFVPQGK 234


>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
 gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
 gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|312959649|ref|ZP_07774166.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286366|gb|EFQ64930.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 125/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED     H +   L    F   +   G  G  L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGHYLRQGLAEAGFTTELVADGTSGQHLALTGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLDIPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DL ++L  + VE  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 STPQDTALQLADLRLDLIRRRVERDGQRIDLTAKEFALLELLLRRQGEVLPKTLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  II+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNIIEVAIRRLRLKVDDNFPNK-LIHTVRGMGYVLEE 223


>gi|229084208|ref|ZP_04216492.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699086|gb|EEL51787.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 233

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ILLI+D+ A+   +  +L+ E F ++      E  + L +   FD +ILD+ L    GF+
Sbjct: 6   ILLIDDETAILQLLTTILQKEGFSHITTATSAEKALLLVEQKHFDLMILDVMLPGQSGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  L+  SS  DKV G   GADDYI+KPFN  E+VAR++A +RR   
Sbjct: 66  ICPIIRQ-KTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                I       G + ++  A  ++V G  +  + + +Q++       N   +KE    
Sbjct: 125 QTPQTIKEYTLSFGRVQIDKHAAELQVDGEIVECSAQLFQLLLFFCEHPNYVFSKEEIYE 184

Query: 177 HLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++       +   + V I KLR+K+        YI+T+ G GY   
Sbjct: 185 KVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPKYIKTIRGLGYKFV 231


>gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 225

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA ++   L +E F V V   G  G E     +FD ++LD+ L    G+
Sbjct: 1   MRVLLVEDERRLAETVRRGLTAEGFVVDVEHDGLSGFEAALSGDFDVVVLDIMLPGKHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  ++ TPV +LS      D       GADDY+ KPF+   LVAR+RA+VRR  
Sbjct: 61  DIVRDLRRREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    L ++     V   G  + LT +EY ++E L     + +TK+  L  ++D
Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  I++V+I  LR+K+ +   G+N I+TV G GY L+
Sbjct: 181 THYEGDDNIVEVYIGYLRRKV-DTPFGRNSIDTVRGVGYRLK 221


>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
           ATCC 39073]
 gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
           [Moorella thermoacetica ATCC 39073]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   ++  L  E ++V +   G   + L      D IILD+ L  I G  
Sbjct: 4   RILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAA-NNPDLIILDIMLPGIDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+ +L+      D+V GL +GADDY+ KPF  EEL+ARIRA++RR   
Sbjct: 63  VCRQIR-SNSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEELLARIRALLRRRSR 121

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++   DL++N   +          LT KEY+++       +  LT++  +  ++ 
Sbjct: 122 ETEAEVLQFSDLTLNTSTREGFRGQRSFSLTAKEYELLLYFLQNPHRVLTRDELMTRIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E  +++V+I  LR KL  A G    I+TV G GYVL+E 
Sbjct: 182 YDFSGESNVLEVYIGYLRAKLE-AGGEPRLIQTVRGVGYVLKEQ 224


>gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 235

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDDK L   +   + +  + V     GE+G  L     +DA++LD+GL  + G  
Sbjct: 8   RILIVEDDKDLNRQLAEAMAAAGYVVDRAYDGEEGHHLGDTEPYDAVVLDIGLPRMDGIS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+   R +  + PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ G
Sbjct: 68  VVERWRRSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAG 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           HA S +V G L ++       + G  + LT  EY+++  L    +  +++   + HLYD 
Sbjct: 128 HASSELVCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYDQ 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             + +   I+VF+ +LRKK+         IETV G GY +R     ET
Sbjct: 188 DFDRDSNTIEVFVGRLRKKMGVD-----LIETVRGMGYRIRSEGGGET 230


>gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB056]
 gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB059]
 gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter
           baumannii AB0057]
          Length = 223

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL ++L    V   G+ I L+  E+ ++  L + K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+         I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKIDEE-YEPKLIHTIRGLGYKI 219


>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ +K+E +   +   G++ +   +   +   IILD+ + ++ G
Sbjct: 1   MKILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+RA++RR+
Sbjct: 61  TEVLKEVRKDNP-VPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRA 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++N D+  V    G  I+LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNGLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR KL +A GG   ++TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGYKIE 227


>gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 210

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 57/213 (26%), Positives = 102/213 (47%), Gaps = 6/213 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKI 71
           +   + + L +  +     + G+D + +     +D +ILD+ +  + G  V + +R    
Sbjct: 1   MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGTSVCKEIRKTS- 59

Query: 72  STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIV--T 129
             P+  L+      ++V GL+ GADDYI KPF+  EL+AR+ A++RR     Q       
Sbjct: 60  DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQF 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           G + +N  ++ +E+ G  I LT KE+ ++  L        ++E  L  ++        + 
Sbjct: 120 GSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWGYDYAGSTRT 179

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D  +  +R KL  +    NYI+TVWG GY   
Sbjct: 180 VDTHVKTMRLKLGESG---NYIQTVWGVGYKFE 209


>gi|71908092|ref|YP_285679.1| heavy metal response regulator [Dechloromonas aromatica RCB]
 gi|71847713|gb|AAZ47209.1| Heavy metal response regulator [Dechloromonas aromatica RCB]
          Length = 223

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L    F   +   G DG+      E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEAKTGDYLKQGLSEAGFGADLARNGLDGMHEGLAGEYDLLILDVNLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ALR A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 61  QVLKALRAAGRDLPVLFLTARDQVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  +     G RI LT KE+ ++EL   R+   L +    + ++D
Sbjct: 121 AKETGNLSIADLELDVLKRRAIRAGQRIDLTAKEFALLELFLRRQGEVLARSFIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR K+         I T+ G GYV+ 
Sbjct: 181 MNFDSDTNVVEVAIRRLRAKVDEEF-TPKLIHTLRGMGYVME 221


>gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
 gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80]
          Length = 224

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 227

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +LK E + V V   G+ G +L    ++D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  ELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +A   +    L ++++ +     G  I L+ KE Q+++         LT       
Sbjct: 121 ATETNAPVRLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIYQQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+   ++P   ++   +  LR+K+  A G    I TV+G+GY L E +
Sbjct: 181 LWQDEEQPSSNVLAALVRLLRRKIE-APGEAPLIHTVYGKGYRLGEGS 227


>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 233

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +   + L L+ + + V   + GE  +E+      D ++LDL L  I G E
Sbjct: 5   KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V RA+R       TP+ +LS      D + GL+ GADDYI+KPF+ + L+ARIR+++RR 
Sbjct: 65  VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124

Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  A        I    ++++    TVEV G +I LT  E+ ++  L+ R     T+   
Sbjct: 125 QAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ +         + +DV I  LRKKL +      YIETV G GY  RE
Sbjct: 185 VDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230


>gi|121604441|ref|YP_981770.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120593410|gb|ABM36849.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 222

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+   F V     GE      +   ++A +LDLGL    G 
Sbjct: 1   MRILLAEDDSLLGDGLRAGLRQLGFQVDWVRDGEAAERELRAQPYEAAVLDLGLPRKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R + + TPV +L+   ++ +++RGL +GADDY+ KP +  EL AR+RA+VRR+ 
Sbjct: 61  DVLAAVRRSGVKTPVLVLTARDAVPERIRGLDAGADDYVVKPVDLHELAARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +   D+ ++  ++TV   G  + L+ +E+ +++   L  +  L++E     LY 
Sbjct: 121 GQPQERLSAQDVELDPASRTVRKAGEPVTLSTREFDLLQAFMLSADRVLSREQLEQQLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E   I+V I  LR+KL     G   I TV G GY+L++
Sbjct: 181 WGQEVESNAIEVHIHNLRRKL-----GPALIHTVRGVGYMLQK 218


>gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 225

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   LTK      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 224

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ +A  ++  L    F  ++   G+  +E  +    DA+ILD+ L ++ G +
Sbjct: 4   RILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIMLPEVDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K + P+ +L+      D++ GL+ GADDYI KPF+  E+VAR++A++RR+  
Sbjct: 64  ICRGIR-KKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTSP 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G L++  +   V   G  I LT  E+ ++  ++       ++   ++ ++ 
Sbjct: 123 EKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVHG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +D  I  LRKKLS      N I T++G GY + 
Sbjct: 183 YEFEGYERTVDSHIKNLRKKLSE-FVNDNIIHTIYGVGYKIE 223


>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
 gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
          Length = 253

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  LA  +   L+   ++V+    G   I L +    D IILDL L  I G +
Sbjct: 20  RILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGRD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V R +R    S P+ +L+   S +D V   Q GADDY+ KPF   EL ARI A++RRS  
Sbjct: 80  VCRLIRKWS-SAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +++  G L +  D   V  +G  +HL  +E+ ++  L  R     T++  L+ ++ 
Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWG 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDET 229
            +D  +++ +DV I ++R+ L     G N I TV G GY       A DET
Sbjct: 199 -QDVVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRFVPELAAMDET 248


>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   +++ L  E + V  +  GE+ +   +  +FD I++D+ +  I GFE
Sbjct: 4   KILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    +T +  L+   + +DK++G  SG DDYI+KPF+  EL  R+ AI+RRS  
Sbjct: 64  AIKIIRKL-TNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSNV 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    I   DL +NL   T+      I LT KE+ ++ LL+  K            
Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGKGEITLTPKEFDILCLLARNKGRVFPSSELYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KL++      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 231

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F V V + GE+G++L     F+ ++LD+ +  + GF 
Sbjct: 3   KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+AR+RAI+RR+  
Sbjct: 63  MLARLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG +   +   DL +    +     G  + LT  E+ ++E L       ++K    
Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +   + EP  + ID+ +  LRKKL     G+   +TV GRGY+  E A
Sbjct: 182 ELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231


>gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37]
 gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD   A  I   LK + F V     G + +  C + + D  I+D  +  + G 
Sbjct: 1   MKILLAEDDPKSADYICKGLKEQGFVVDWVADGREALTYCLYNDADLAIVDRMMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK + PV  L+ +S ++D+V GL +G DDY+ KPF+  EL+ARI  + RR +
Sbjct: 61  SLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVLGRRPK 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q    +V  DL +NL  +  + QG  I L GKE+ +++L         ++ + L  +
Sbjct: 121 QSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTLILEKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P   +++  + KLR+K+ +       I TV   GY +R  
Sbjct: 181 WDFNFDPGTTVVETHVSKLRQKV-DKPFDVALIHTVRNMGYTIRAP 225


>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
 gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
          Length = 220

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I+  L ++N+ + V   G +GI+      FD I+LD+ + ++ GFEV
Sbjct: 5   ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLNGFEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+  L+ +   +D+++G   G DDYI+KPF+   L+ R++A++RRS   
Sbjct: 65  AKMLRNQS-NIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNHK 123

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +   +L+V+ D     V    I LT KE+++++LL   +   LT+E+ +  ++  
Sbjct: 124 NWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E ++ID  I  LRKKL        YI+TV G GY + E
Sbjct: 184 DYSGETRMIDTHIKNLRKKL-----NLPYIKTVKGIGYKIDE 220


>gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 225

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 61  KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              AQ+ +  G+L + L  + V + G  I L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G   IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223


>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
 gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
          Length = 269

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   +DV I +LR K+ +    +  I T+ G GY       +E
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKNNE 241


>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V       + +        D ++LD+ L D+ GFE
Sbjct: 4   RLLVVDDEATVRELLSAALRFAGFRVTSAATAREAVAAATAEPPDLVLLDVMLPDMDGFE 63

Query: 62  VLRALRVAKI----STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           V+R LR          PV  L+      DKV GL  GADDY++KPF+  EL+ARIRAI+R
Sbjct: 64  VVRRLRERHPGHGAPVPVLFLTARDRQSDKVTGLSLGADDYVTKPFDLAELIARIRAILR 123

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+ G    ++  G L+++ +   V   G  I L+  E++++  L       ++K   L+ 
Sbjct: 124 RTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSATEFRLLRYLMENAGRVVSKGQILDR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +  I+D +I  LR+K+         I TV G GYVLRE 
Sbjct: 184 VWRDDFGGDAGIVDTYISYLRRKV--DTAEPKLIHTVHGVGYVLREP 228


>gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
 gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii
           as4aup]
          Length = 221

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   ++   +       GE+   L     +DA+ILD+GL  I G 
Sbjct: 1   MRILIVEDDRNLHHQLAEAVRRAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPYIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R    S PV +L+      DKV G+ +GADDY+ KPF+ EE++AR+RA++RR+ 
Sbjct: 61  RVVEKWRQEGHSMPVLMLTARDRWSDKVHGIDAGADDYVVKPFHLEEVMARLRALIRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G++ ++     V V G  I LT  E++++  L    +  +++     HLYD
Sbjct: 121 GHATSALCCGNVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   ++VF+ +LRKKL         IET+ G GY +R
Sbjct: 181 QDFDKDSNTVEVFVGRLRKKLGVD-----LIETIRGMGYRVR 217


>gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
 gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator,
           putative [Ricinus communis]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 133/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           +++L++ED++ +A  ++  L    + V+  D G DG+ L     ++AII+D  L   I G
Sbjct: 4   IKLLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++ ALR    + P+ ILS M+ ++D+++GLQSG DDY+ KPF+  EL+AR+ AI+RRS
Sbjct: 64  LSIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRS 123

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   + + +V G+L +++    V   G  I L  +E+ ++E L    N  +T+ M L ++
Sbjct: 124 RELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  ++DV I KLR+KL         ++T+   GY+L + 
Sbjct: 184 WDYDFDPQTNVVDVHISKLRQKLDID-SLPPMLKTIRNAGYMLTDE 228


>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 243

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  + + + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR A  S PV +L+     ED+++GL+ GADDYI KPF+  ELV+RIRA++RR    
Sbjct: 69  LRRLRQAS-SVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHYTP 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +          L ++   + V V G R++L   EY+++  L       +T E  L+ +
Sbjct: 128 PPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +      E   + +++  LR+K+        YI T  G GY   +  +D
Sbjct: 188 WGPEYRDETHYLRLYVTYLRQKIEEDPANPKYILTERGIGYRFVDFKRD 236


>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
           4571]
 gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
 gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Lactobacillus
           helveticus H10]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A GG++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|148379883|ref|YP_001254424.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931457|ref|YP_001384180.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153935275|ref|YP_001387721.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226949220|ref|YP_002804311.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|148289367|emb|CAL83463.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927501|gb|ABS33001.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152931189|gb|ABS36688.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226840740|gb|ACO83406.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 233

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S E+ N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R    + P+ +LS  +   DK+ GL  GADDYI+KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRERN-NIPIIMLSAKNEDIDKILGLNIGADDYIAKPFNPLELVARVNSQL 119

Query: 117 RRSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|88860480|ref|ZP_01135118.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
 gi|88817678|gb|EAR27495.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas tunicata D2]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 114/226 (50%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD  L    +  L    F V V   G + +   +  + D +ILD+ L    GF 
Sbjct: 3   HILLVEDDLVLQQLTKEYLIHNGFTVSVLGNGSEVLSSVQSLQPDLMILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    S P+ +L+      D+V GL+ GADDY+ KP     LVARI AI+RR + 
Sbjct: 63  VCREVRDKH-SLPILMLTAKGEDFDQVVGLEFGADDYVVKPVEPRVLVARINAILRRHKP 121

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H Q   +V G L ++  ++ V +    I LT  E++++ LL+      L ++     +  
Sbjct: 122 HRQHEELVFGQLKIDKTSRLVFLNQEEITLTSHEFELLWLLASNAGEVLNRDYVHQQMIG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +   + +DV I +LRKKL +       I+TVWG+GY+   +A 
Sbjct: 182 REYDGLDRTVDVRISRLRKKLLDNTDKPYRIKTVWGQGYLFVSDAW 227


>gi|229017879|ref|ZP_04174762.1| Sensor histidine kinase [Bacillus cereus AH1273]
 gi|229024084|ref|ZP_04180555.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228737180|gb|EEL87704.1| Sensor histidine kinase [Bacillus cereus AH1272]
 gi|228743470|gb|EEL93587.1| Sensor histidine kinase [Bacillus cereus AH1273]
          Length = 232

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/217 (30%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV + +R    + 
Sbjct: 17  ELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENN-TV 75

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-------GHAQSL 126
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS         +   +
Sbjct: 76  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNAATPKNEDGI 135

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I    + ++    TV+V G  I LT  E+ ++ LL+       + E     +++      
Sbjct: 136 IRIRTVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 195

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+  I TVWG GY + +
Sbjct: 196 NKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 232


>gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330]
 gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12]
 gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330]
 gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12]
          Length = 236

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 8   MKILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 68  MQVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 233


>gi|149187893|ref|ZP_01866189.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
 gi|148838289|gb|EDL55230.1| two-component system response regulator (Pho family) protein
           [Vibrio shilonii AK1]
          Length = 224

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   V  +  G DG+      +FD IILD+ L    GF
Sbjct: 1   MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S+E++V+GLQSGADDY+ KPF   EL+AR + ++RR +
Sbjct: 61  EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G L+++L   T++ +   I +  +E+ +++LL     T ++K   L H+
Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATP-LIHTLRGVGYVLK 223


>gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19]
 gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308
           A]
 gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
          Length = 235

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  +E        +  +   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   + TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RRS 
Sbjct: 61  SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++   GDL ++  A T   Q   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + TV G GY+L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEP-LLHTVRGAGYMLK 222


>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
 gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETHVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 227

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ EDD  +   +  ML  E ++V + D G+  +   +  + D IILD+ + ++ G+
Sbjct: 1   MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V + +R     TPV  LS      DKV GL+ GADDYI+KPF   E+ ARI+ I RR  
Sbjct: 61  SVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCL 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +       + GDL++       + Q   I L+ +E +++  L   KN  +T++M L+
Sbjct: 121 KAKQNSPDQSFIFGDLTIYPMELCAKRQQQTIELSLREIKILSCLHRYKNQIVTRDMLLD 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++     P  + +D  I KLRK + +       I+T+ G GY  +E
Sbjct: 181 WVWGVDHLPNSRTLDQHISKLRKMIESDPNTPLLIKTIHGYGYRYQE 227


>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 229

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +      + D +ILD+ + ++ GF+
Sbjct: 13  KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      PV +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 73  VCFELR-KYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V      + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWGY 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             E   + +DV I +LR+K        + I+T+ G GY 
Sbjct: 192 DFEGNERTLDVHINRLREKFQEEQSKFS-IKTIRGLGYR 229


>gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEVLRA 65
           ED++++   I + LK   F V     G + + +     + D  +LD+ +  + GFEV R 
Sbjct: 2   EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCRR 61

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS 125
           +R       +  L+     +DKV  L  GADD++SKPF+  EL+ARI++++RR   H ++
Sbjct: 62  IRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVNVHRET 121

Query: 126 ----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  +G  +++L AK  +  G  I LT  E+ +I+    ++NT L++++ L+H++  
Sbjct: 122 AAKVSFQSGPFTLDLIAKQFKKNGQLIELTPTEFSLIQFFLEKENTPLSRDVLLDHVWGK 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + KI+DV I +LR+K+ N      +++TVWG GY  +  ++
Sbjct: 182 EYMGDPKIVDVNIRRLRQKIENNPSEPAFLQTVWGHGYKWKGQSQ 226


>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++A+   + L L  + + V   +  +  I      + + I+LD  +    G  
Sbjct: 4   KILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRSGIH 61

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ L+    +   P+ +L+  SS ED + GL +GADDYI+KPF+ + L+ARI A+ RRS
Sbjct: 62  LIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +LI    L ++  A+ V V    + L+G EY+++  L         +E  L+ ++
Sbjct: 122 YDPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLITHPEKVYRREQLLDFIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +D +I +LRK L    G + YI+TV G GY    + +D
Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPY-GFERYIQTVRGSGYRFSNHFQD 228


>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
 gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
           15053]
          Length = 240

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +  S+  +L+ E + V     G + +++    +   IILD+ + ++ G   
Sbjct: 12  VLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVMMPELNGLSA 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L  +R  K + PV +LS  +   DKV GL  GADDY++KP+N  EL+AR+++ +RR    
Sbjct: 72  LMKIRE-KNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFAL 130

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +   + +++ TG L ++ + K V V G    LT  EY+++ELL          E   
Sbjct: 131 GAAAWADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQIY 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++        K + V I ++R+K+        Y++ VWG GY + +
Sbjct: 191 SRVWQEDVYAGEKTVMVHIRRIREKIEITPKNPKYLKVVWGIGYKIEK 238


>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
           str. NATL2A]
 gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. NATL2A]
          Length = 265

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ +  I+DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRTNRAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L     D+  
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPTGDKIS 240

Query: 231 EYLET 235
           E   +
Sbjct: 241 EIQPS 245


>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
 gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
 gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus LMG 18311]
 gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
           thermophilus CNRZ1066]
          Length = 229

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 227

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +++ +  +L    +       G + +   +   +  I+LDL L  + G 
Sbjct: 4   INILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLMLPGMSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR    +  V  +S       K+  L++GADDYI+KPFN EEL+ARI A++RR+ 
Sbjct: 64  EVLKSLRQTSDTL-VIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNS 122

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G+       +    L++N     V ++G  + LT +EY+++ELL        +K +    
Sbjct: 123 GNTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYET 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     E   I+V I  LR+KL+     + YI+TVWG G+ ++
Sbjct: 183 VWEDLFLGEDNAINVHISNLRQKLAKIDPDEAYIQTVWGIGFKMK 227


>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 237

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 117/237 (49%), Gaps = 17/237 (7%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V 
Sbjct: 2   LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122
           R LR     TP+ +L+ +   +D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+    
Sbjct: 62  RVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPDG 121

Query: 123 ---------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                           Q  I    L +++ A+        + LT  E++++ELL      
Sbjct: 122 MAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNAGI 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L      + ++     P  K + V++  LR+KL +  G    I TV G GYVLRE+
Sbjct: 182 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPQLIHTVRGVGYVLRED 237


>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. 16M]
 gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
 gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
           melitensis bv. 1 str. 16M]
 gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus str. 2308 A]
          Length = 255

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 33  RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 92

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 93  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 152

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 153 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 212

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 213 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 254


>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonas sp. SN2]
          Length = 224

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 85/224 (37%), Positives = 134/224 (59%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  L   ++ +L+   ++V + D GE  + L   Y +D  I+D+GL  + GF
Sbjct: 1   MRILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R   I  PV IL+     ++KV GL +GADDY++KPF+ EEL+AR++A++RR+ 
Sbjct: 61  EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G +S++  A+ + V    + LT  EY+++E L L     ++K     H+YD
Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+VF+ +LRKKL +       IET+ GRGY +  N
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPENSFKPIETLRGRGYRINRN 223


>gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 239

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L        I+LDL L    G  
Sbjct: 6   KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESVSLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR   
Sbjct: 66  VCQRLRNQSNPVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++I  G  S+NL  + +      I LT  E+ ++++L       L++   
Sbjct: 126 KLLGLPAEDDAIINFGKFSLNLSTREMFQGDEHIQLTSGEFAVLKVLVSYPGVPLSRNKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV + +LR+ +        YI+T+WG GYV   + 
Sbjct: 186 MNLARGREYSTMKRSIDVLVSRLRRVIEEDPTHPRYIQTIWGLGYVFVPDG 236


>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+++LA  +   L+ +   V     G   +   +    D ++LDL L  + G E
Sbjct: 4   RVLVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALPGLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       V +L+  S   DK+ GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 64  VCRQIRTF-TDCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPRA 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  QS    G L V+L  + V V    + LT  E+ ++  LS + +T L +   ++
Sbjct: 123 AVAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +  ++DV I  LR+KL +   G  +I TV G GY +
Sbjct: 183 AVWGADWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGYRM 227


>gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
 gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271]
          Length = 247

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 29  HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 89  ICKIMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 208 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 246


>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
 gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
           [Sorangium cellulosum 'So ce 56']
          Length = 231

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 118/229 (51%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED++ L   +    +   F+V     GE  +   K   FD ++LDL L D+ G E
Sbjct: 4   HVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMSGTE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+    +   PV +++      D++ G + GADDY+ KPF+  EL+ R RAI++RS
Sbjct: 64  ICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRS 123

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A      G L V+  A    VQ   I LT  E++++ +L  R+   L++++ L+ 
Sbjct: 124 ESPASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++    +   + +D  + ++R+KL  A    +YIETV G GY  R   +
Sbjct: 184 VWGSHVDVTARNVDTHVKRVREKLGAAG---DYIETVRGVGYRFRAEPE 229


>gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
          Length = 227

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/228 (38%), Positives = 138/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +LRKKL       N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLRVISPDE 227


>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 242

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+A  I++ LK   F   +                D I+LD  L    G  
Sbjct: 6   RVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPGQSGLS 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  + +   P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +Q   +  G L ++     +  QG  + L   E++++  L        ++   L+ +
Sbjct: 126 APESQGDSVTVGALVLDAATHRIAWQGQDLKLGPTEFKLLHYLMKHPERVHSRSSLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR+ L  A      +ETV G GY L
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGAAGA---MVETVRGAGYRL 225


>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
 gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
           F0305]
 gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
           10105]
          Length = 239

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L SE ++  +   G   ++L   Y  D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +   +   P+ +L+      DKV GL +GADDY++KPF+  ELVAR +A++RR    
Sbjct: 74  TKRIVTMRP-VPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++    L+++   + V ++G  IHLT  E+ ++  L+ +    LT+E  
Sbjct: 133 KVIAKNSENEKVLEFHGLTIDPAQRLVVLRGEEIHLTPTEFDLLATLARKPKQVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL     G   I TV G GY     
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSEMIRTVHGVGYAFEPP 237


>gi|168184909|ref|ZP_02619573.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182672016|gb|EDT83977.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 233

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S EN N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIENTNIIKAADGLDALDVLENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R  K + P+ +LS  +   DK+ GL  GADDY++KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRE-KNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQL 119

Query: 117 RRSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTADVDEIYIDQLFINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 224

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +  GDL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 SHEPLQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V I +LR KL +       + T+ G GYVL   A
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFDNKLLHTIRGMGYVLENRA 223


>gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
 gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
 gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
          Length = 225

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291]
          Length = 244

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 243


>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 232

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +  +IE+ LK++N+NV+    G + +E+ +  E   +++D+ +  + G + 
Sbjct: 4   ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDGTKT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    S P+  LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +RR   +
Sbjct: 64  TIKIRETS-SVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTNY 122

Query: 123 A-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A       +++I  G + +  D+K + V G  I +T  EY+++ LL    N   + E   
Sbjct: 123 ANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          + V I ++R+K+    G   Y++ VWG GY   +  +
Sbjct: 183 EKVWKEPAY-NPDTVTVHIRRIREKIEINPGEPRYLKVVWGVGYKFEQPKR 232


>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
 gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 230

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   + D G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LDVVKTVRKDS-RIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      +  G L +N D+  V+   G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENAVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229


>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD         +L+   + V     G   ++  + Y  D I+LD+ +    GF
Sbjct: 1   MYILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+  LS  S ++D+V GLQ G DDY+ KPF   EL+AR+ A++RR  
Sbjct: 61  DVCRQIRRTS-DVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + +  GDL+++     V    G  + LT  E++++  L       L     L+
Sbjct: 120 SDMLNPSARLSLGDLTLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNAGRVLNTSQILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++ V+I +LR K+        ++ TV   GY   
Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 248

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+ +L   +   L++  F V     G   ++L +  + D I+LD+GL  + G E
Sbjct: 13  RALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDGIE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V +L+  +   D + GL  GADDYI+KPF+  EL+AR++ ++RR R 
Sbjct: 73  VCRTLRTF-TDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQ 131

Query: 122 HA-------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            A             ++  V G L +++ A+ V + G  + LT  E+ +++ LS R    
Sbjct: 132 SAADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVA 191

Query: 169 LTKEMFLNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ + L  ++ G     +  ++DV I +LR+KL + A    YI T+ G GY + E
Sbjct: 192 FSRSLLLERIWGGGAWAGDEHLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRMGE 247


>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 236

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+ ++   I + L+   +     +  +   E+   +  D I++D  +    G E
Sbjct: 10  KVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSGIE 69

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+    +   PV +L+  S  ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+
Sbjct: 70  LTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 129

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I    L+++  ++ V +    + +   EY++++ L   +    ++   L+ +
Sbjct: 130 TPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYSRAQLLDQV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + +DV I +LRK +   +     I+TV G GY  
Sbjct: 190 WGGNVYVEERTVDVHIRRLRKAIG--STHDFLIQTVRGTGYRF 230


>gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
 gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str.
           Toulouse]
          Length = 222

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   ++S  +       G++   L     +DA+ILD+GL  + G 
Sbjct: 1   MRILIVEDDRNLNHQLAEAVRSAGYVSDSAFDGQEAYFLGSTESYDAVILDIGLPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      PV +L+      DKV G+ +GADDY+ KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVVKPFHLEELMARLRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++     V V G  I LT  E++++  L       ++K     HLYD
Sbjct: 121 GHATSALCCGAVLLDTKTSRVFVDGQLIKLTSYEFRLLSYLMHHCGRVVSKTELTEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   ++VF+ +LR+KL         IET+ G GY +R
Sbjct: 181 QDFDKDSNTVEVFVGRLRRKLGVD-----VIETIRGMGYRVR 217


>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
 gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
           3_1_syn3]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L+ E F+V   + G+ G+EL + +    IILD+ L  + GFEV
Sbjct: 6   ILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPALDGFEV 65

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  +    + PV +L+      D+V GL  GADDY+ KPF+  EL+ RI+AI+RR  
Sbjct: 66  SRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRRGG 125

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+S +     + +  DA T       + LT  E++++E L     T  T+E  LN+++
Sbjct: 126 RVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNNVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E   + +D  + +LR KL  AA     +ETV G GY +RE
Sbjct: 186 GYSFEGYARTVDTHVRRLRSKLGEAAAA---LETVRGVGYRIRE 226


>gi|229133604|ref|ZP_04262431.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
 gi|228650004|gb|EEL06012.1| Sensor histidine kinase [Bacillus cereus BDRD-ST196]
          Length = 231

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 112/217 (51%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N+Y    G++ +++   YE D ++LD+ +    G  V + +R    + 
Sbjct: 16  ELLAVYLRNEGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLAVCQEVRENN-TV 74

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-------RGHAQSL 126
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS       + +   +
Sbjct: 75  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGI 134

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I    + ++    TV+V G  I LT  E+ ++ LL+       + E     +++      
Sbjct: 135 IRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 194

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+  I TVWG GY + +
Sbjct: 195 NKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231


>gi|75762016|ref|ZP_00741930.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74490502|gb|EAO53804.1| Alkaline phosphatase synthesis two-component response regulator
           phoP [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 207

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 9/206 (4%)

Query: 32  LGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGL 91
            GE  ++       D IILDL L  + G EV + LR+ ++ TP+ +L+      DKV GL
Sbjct: 2   DGEMALQKATTERPDLIILDLMLPKMDGMEVCKELRLQRVMTPILMLTAKDDEFDKVLGL 61

Query: 92  QSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL---------IVTGDLSVNLDAKTVE 142
           + GADDY++KPF+  E+VAR++AI+RR++   +           I   +L +  +     
Sbjct: 62  ELGADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAY 121

Query: 143 VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLS 202
            QG ++ LT KE++++  L+  K+  LT++  L+ +++     + +I+DV I  LR K+ 
Sbjct: 122 FQGRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWNYDFAGDTRIVDVHISHLRDKIE 181

Query: 203 NAAGGKNYIETVWGRGYVLRENAKDE 228
                  YI+T+ G GY L E   +E
Sbjct: 182 QNTKKPTYIKTIRGLGYKLEEPKGNE 207


>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   L ++ + V       +   L +  ++  I+LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GDL++NL ++ V ++   + +T KE+ ++  L +R    + +E     LY 
Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+P    ++V I  LR+KL     GK+ I+TV G GY L 
Sbjct: 181 WNDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLE 217


>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 234

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D I+LD+ +  + G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVDGIQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+      D++ GL +GADDY++KPF+ EE+ AR+RA++RR    
Sbjct: 65  CRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAPV 124

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +           +   DL ++  A+ V   G  + LT  E+ ++ELL+      L    
Sbjct: 125 PEPTTEGTVFDATLAVADLRLDPSARRVWRGGTELELTRTEFDLLELLARNAGIVLDHGT 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + ++     P  K + V+I  LR+K+         I TV G GY LRE 
Sbjct: 185 IYSRIWGYDFGPGSKNLAVYIGYLRRKVDQTGLTP-LIHTVRGVGYTLREE 234


>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
 gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9202]
          Length = 260

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          I LT  E++++  L  R   T++
Sbjct: 121 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-------E 223
             + L  ++    + +++ I V I  LR KL        YI+TV+G GY L        E
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLELPIGSQVE 240

Query: 224 NAKDE 228
            A++E
Sbjct: 241 TAREE 245


>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
 gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseovarius nubinhibens ISM]
          Length = 221

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+ED+ A    +   L+++ F V   + GE+ + L      D I+LD  L ++ G EV 
Sbjct: 1   MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNVSGIEVC 60

Query: 64  RALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           R L+    +   P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R 
Sbjct: 61  RQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRTRP 120

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A  + +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++ 
Sbjct: 121 AAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 181 RDIYVDTRTVDVHIGRLRKALCQY-GGDDPLRTVRGAGYAL 220


>gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
 gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens
           TC1]
          Length = 246

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +LA  + + L+   ++V V   G   ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  EVLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL++N+D + V   G  I LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+         I T+ G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKIEAN--HPPMIHTIRGAGYVIKP 244


>gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes
           HL060PA1]
          Length = 236

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+  S   D V+ L +GADDY+ KPF   EL+ARIRA +R     
Sbjct: 70  CQDIRRESG-VPIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVAQ 128

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRINTPGEE 235


>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
 gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  +E+ LK E +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ I++   S+ D+V G   GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-NTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
 gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium limosum
           KIST612]
          Length = 222

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +    + E   V     G + ++L K  +FD IILD+ + ++ GF 
Sbjct: 3   RILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  K  TPV +LS      D++ G + G DDY+ KPF+ +EL+ R+ AI++R  G
Sbjct: 63  ACKEIRKYK-DTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGG 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   +  GDL V+   + V + G  + +T KEY +   +   +   LT+E  + +++
Sbjct: 122 AQENKDVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I  LRK L + +     I T+ G GY   
Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGDYS---KCIVTLRGVGYRFE 221


>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 228

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 115/219 (52%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +   +EL L++E F V     G   + +   ++   I+LD+ +  + GFE
Sbjct: 8   KILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +L+    +ED+V+GL  GADDY+ KPF+ EEL+ARI A +R    
Sbjct: 68  VCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQFP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +V G   ++   K +      + L+  EY++++ L L     L+K   L+ ++  
Sbjct: 128 ALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               E  I++V+I  LR+KL++       I T+ G GY 
Sbjct: 188 DFGGEENIVEVYIRSLREKLND--REHRLIRTLRGAGYR 224


>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 237

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 11/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +   L    F V   D GE  + L +    D ++LD+ L  + G+++
Sbjct: 12  ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQI 71

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR        P+ +L+  S  +D   GL  GADDYI+KPF+ + LV+R+++ +RRSR
Sbjct: 72  CKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRSR 131

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              Q        +    + ++     V VQ   + LT  E+ ++ELL+ R     +++  
Sbjct: 132 ELDQDEDGGVLRLTEAGIVIDPRRHQVLVQDKPVSLTISEFSILELLARRPGWVFSRQQI 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++ +         + +DV +  LRKKL  A      IETV G GY L+
Sbjct: 192 IDTVRGYDYAITPRAVDVQVFGLRKKLGQAGAC---IETVRGVGYRLK 236


>gi|210617586|ref|ZP_03291642.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
 gi|210149251|gb|EEA80260.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L +        + G+  +E   F   + I+LD+ L    G  +
Sbjct: 2   IYCVEDDGNIRELVVYTLNTTGMEARGFEDGKSFMEALAFETPELILLDIMLPGEDGLSL 61

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+        PV +++   +  DKV GL  GADDY++KPF   ELV+RI+A++RR++
Sbjct: 62  LKKLKNSAKTKEIPVIMVTAKGAEYDKVVGLDGGADDYVTKPFGMMELVSRIKAVLRRTK 121

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +      G+LS++L    V V G ++ LT KE++++  L    N  LT++  L  ++
Sbjct: 122 KEKEEGQYSVGNLSMDLKKHVVFVDGKQVTLTLKEFELLGRLVQNHNIVLTRDRLLEEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + E + +DV +  LR+KL +A    + I+TV G GY L E
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGSAG---DMIQTVRGVGYRLGE 222


>gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 237

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDDK +   IE+ L+S+ + V+    G +G+++ +  E    I+D+ +  + G  
Sbjct: 5   HILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREEIHLAIVDVMMPRMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   LR A    PV ILS  S   DK+ GL  GADDY+SKPF   EL+AR+ + +RR   
Sbjct: 65  MTVKLREA-YDFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYKK 123

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                    +    ++   G L +N D   V V    + LT  E++++ LL        +
Sbjct: 124 YMDMLEEKEQKEKSNVYSIGGLELNEDTVEVTVDEKPVKLTPIEFKILALLIKNPGRVFS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E     +++ R       I V + K+R+K+        Y++ VWG GY + + A
Sbjct: 184 AEEIYERVWNER-AINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEKQA 237


>gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
 gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733]
 gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15]
 gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium D344SRF]
 gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01]
 gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B]
 gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A]
 gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C]
 gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04]
 gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082]
          Length = 236

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + + +E +       G++ +   +   + + +ILD+ + ++ G
Sbjct: 8   MKILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIELLILDIMMPEMDG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RR+
Sbjct: 68  MQVVKELRKES-QIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRT 126

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++    L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 127 KMQIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 187 FERVWKQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 233


>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 237

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +A  IE+ L++EN+ VY +   +  +E  +  + D  ILD+ L DI GF+
Sbjct: 4   KVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K + PV +L+      D + GL  GADDY++KPF    L+AR++A +RR + 
Sbjct: 64  ICKKIRE-KYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYKK 122

Query: 122 H---AQSLIVTG---------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           +   ++ +   G          L +N+ A    V G  + LT  E+++++ L  +K   +
Sbjct: 123 YNSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLAV 182

Query: 170 TKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E     ++           I V I  LR+K+ +      YI+T+WG GY + 
Sbjct: 183 MSEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGYKVE 236


>gi|168178370|ref|ZP_02613034.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226948239|ref|YP_002803330.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670982|gb|EDT82956.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226841050|gb|ACO83716.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 240

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D +ILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     + +G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENASEEKNILSFGPFELNISKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235


>gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 84/230 (36%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F   V D G D I + +  + D +ILD+GL  I G E
Sbjct: 19  RALVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRV 137

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LS+++ A+ V +   +I LT  E+ ++E LS R    L++
Sbjct: 138 LQSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + DG       ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 198 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 247


>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
           thermophilus ND03]
          Length = 229

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 87/227 (38%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+EL    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GADDYI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 217

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 133/222 (59%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ L   I+L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    L ++  A+ V V+G +I+LT KEY+++  L  R+N  L++E+ LN ++ 
Sbjct: 120 KPSSNDI----LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I  LR+KL +    ++YI+TV G GY   
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGDL---RDYIKTVRGYGYKFE 214


>gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238]
 gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238]
          Length = 239

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQVI 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G+  +NL  + +      + LT  E+ +++ L       ++++  
Sbjct: 126 EAPGAPSAEDKMVEFGEFRLNLGTREMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +N           + IDV I +LR+ +   +    YI+TVWG GYV   +  +
Sbjct: 186 MNMARGREYSAMERSIDVQISRLRRMIEVDSSRPRYIQTVWGLGYVFVPDGAE 238


>gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
 gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  260 bits (666), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  ++++ L SE +  +    G + +++    +   ++LD+ +  + G   
Sbjct: 7   ILICDDDKDIVSALDIYLTSEGYKTFKAYDGLEALKVVDQQDIQLVLLDVMMPGLDGIRT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR +K + P+ +L+  S   DK+ GL  GADDYI+KPFN  E++AR+++ +RR    
Sbjct: 67  TAKLRESK-NIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYTTL 125

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  G ++++  AK+V V G  + LT  EY +++LL        +      
Sbjct: 126 GGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQIYE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I  LR+K+        YI+ VWG GY + +
Sbjct: 186 QVWNDPSLGSENTVAVHIRHLREKIEIDPANPRYIKVVWGLGYKMEK 232


>gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 246

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED++ +   +   L++  F     + G +     K    + I+LD+ L    G+ +
Sbjct: 24  IYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELILLDIMLPGEDGYNI 83

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L+ L+        PV +++   +  DKV+GL+ GADDYI+KPF   E VAR++A++RR +
Sbjct: 84  LKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRCA 143

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  +    L VN+    V  QG    LT KE++++E L   K   +++   L H++
Sbjct: 144 RQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILCHVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E + +DV +  LR+KL  A    N IETV G GY + ++ 
Sbjct: 204 GYDFDGETRTVDVHVRTLRQKLGEAG---NLIETVRGVGYRIGDHV 246


>gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
 gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
          Length = 271

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A +IE+ LKS+N+NVY+ + G +G+++ + +     I+D+ +  + G E+
Sbjct: 39  ILVVEDEIEIAKAIEIYLKSQNYNVYIANNGLEGLKIIEQHPIHLAIVDIMMPVMDGIEM 98

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+  LS  S   DK+ GL  G DDY++KPF   EL+AR+ + +RR    
Sbjct: 99  TMKIREQ-YDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHKF 157

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +       + G L +++D K V + G  + +T  E +++ELL  +     + E 
Sbjct: 158 LNIIDQKQENTHKYIVGGLELDIDTKEVIIDGKIVKVTPIELKILELLMEKPGRVFSSEQ 217

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +++        + + V I  LR+K+        Y++ VWG GY + + A  E
Sbjct: 218 IYENVW-HEAAINTETVMVHIRNLREKIEINPSNPQYLKVVWGVGYKIEKQANHE 271


>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Salinibacter ruber DSM 13855]
 gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Salinibacter ruber DSM 13855]
          Length = 253

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           R+L+ EDD  L  S+E       + V+    GED + E+     +D ++LD+ L    GF
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R + + +PV +L+     E K+RG   GADDY++KPF+ +EL AR+ A++ RS+
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSRSQ 133

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +   G++SV+   +TV      + LT  E+ ++      +  T+++E  L  
Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLRD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +   + ID  +  LRKK+        Y++TV+G GY    +
Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKFVTD 240


>gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
 gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
          Length = 222

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L++  +   V   G +  ++    +FD +ILDLGL    G  
Sbjct: 3   RILIAEDETRIAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  +R      PV IL+    I DKV GL+SGADDY++KPF  EEL+AR+RA +R +  
Sbjct: 63  VLEEMRGRGERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLRDTGN 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   Q ++ +G++S++L  + V   G  + L+ +E+ + E         +++E  L+ +
Sbjct: 123 GRTQEQLVLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LR+KL       + IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRRKL-----NTDRIETVRGMGYRLR 221


>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 222

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I   L  E F +     G   IE  K    D I+LDL L  + G  
Sbjct: 3   KILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLNGIT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R       + +L+  S  EDK+ G ++GADDYI+KPF+ + LVA+I+A+++R + 
Sbjct: 63  VCSKIREIS-DVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIKE 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   DL +N  ++ V + G  + LT KE  +I  L+  K   L++E  L  ++
Sbjct: 122 DEKEDGVLQFDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E +++ +D  + +LR+KL + A     I TV G GY   
Sbjct: 182 GFDYEGDIRTVDTNVKRLRQKLKDKAT---VISTVRGSGYKFE 221


>gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++EDD+ +   +  +L    +       G + +   +   FD ++LDL L  + G 
Sbjct: 4   IRILVVEDDQDINRLLCTILNDAGYFSQSAFSGSEAMLWAEKEGFDLVLLDLMLPGLTGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E +  +R    + P+ +LS  + +ED+V+ L+ GADD+I KPF+ +E++AR+ A +RR  
Sbjct: 64  EFIAKVRQHG-TMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVK 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    +   V GDL ++ +  TV  +G+ + LT +E++++ LL        T+E   
Sbjct: 123 KFSAPPEKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++      +   ++V I  LR KL   +    +I+TVWG G+ + +
Sbjct: 183 QHVWGEDYFGDDNTVNVHISNLRSKLGKVSKQ-EFIKTVWGIGFKMAD 229


>gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 229

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ LA+ I   L  E +   +       +E+ +  +FD  +LD+ L D  GFE
Sbjct: 3   RILLVEDDENLANGISYALTQEGWATTLAGSVSYALEMLESGDFDLALLDVMLPDGNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL+SGADDY++KPF   EL++RI+A  RR + 
Sbjct: 63  LCKKIRERS-EMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQK 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      + +G L +N         G  I LT  E++++  L   +   L ++  L  +
Sbjct: 122 RSVEEGGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKV 181

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +  +   + V I KLR+K+         IET+ G GY  
Sbjct: 182 WDVDGEFIDDNTLSVHIRKLREKVEEDPSKPKLIETLRGLGYRW 225


>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
           albilineans GPE PC73]
 gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
           albilineans]
          Length = 229

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+  +F         +   L      D I+LD  L    G E
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLPGTSGLE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G+L ++  A  V      + +   EY+++           ++   L+H+
Sbjct: 124 REDDEDGSVSVGNLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYSRAQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L      +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FAVENMVQTVRGSGYRF 225


>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
           [Variovorax paradoxus EPS]
 gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
           [Variovorax paradoxus EPS]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ ++A  I + L+   F    ++ G         +  D I+LD  L    G +
Sbjct: 5   RVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQSGLQ 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +   P+ +L+      DKV GL +GADDYI+KPF+ +E++ARIRA++RR 
Sbjct: 65  LARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAVLRRR 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G+L+++     V  QG  + +   E++++  L        ++   L+ +
Sbjct: 125 APEVVTERVEIGELALDTSTHRVTWQGGALKVGPTEFKLLAYLMQHAERVHSRAQLLDKV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR+ L  AA     +ETV G GY L
Sbjct: 185 WGDHVYIEERTVDVHVKRLRESLGAAA---PMVETVRGAGYRL 224


>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ +   +    K E + VY    G+  +EL   +  D ++LD+ + ++ G+ 
Sbjct: 4   KVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPEMDGWS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ I++     +D++ G + GAD+Y++KPF+ + LVAR +A+++R+  
Sbjct: 64  VCRKIRQQS-DIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALMKRAEG 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    +   G L+VN  A TV +    + LT KEY+++      + T L+++  LN +
Sbjct: 123 SIGRGDDIAQFGALTVNKRAHTVTIASVPVSLTPKEYELLLFFIKHEGTVLSRDSILNGV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  + KLR KL      ++ I+T+   GY   
Sbjct: 183 WGMDYFGDHRTVDTHVKKLRAKLDT---EQHLIQTMIRFGYKFE 223


>gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 226

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 133/223 (59%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  ++   L   N+ + +   GE+G+   + Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I  P+ IL+   + +DKV GL +GADDY++KPF+ EELVAR++A++RR+ 
Sbjct: 61  ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G  S+N  +  ++     + L+G EY++ E   L      +K + + H+YD
Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +I+VFI +LRKKL    G    IET+ G+GY L+ 
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPN-GQYGLIETLRGQGYRLKP 222


>gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 254

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   I+  L+   + + +   G +G E      F A+ILD+ L  + GFE
Sbjct: 21  RLLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVMLPGMDGFE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R A  + PV +L+      D++ GL+ GADDY+ K F+  EL+AR+RA+ RRS  
Sbjct: 81  VLKQIRRAS-NVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +         IV  DL VN  ++T  +    + LT  EY ++  L+  K    ++E  
Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ + +   +   + IDV I  LRKKL +      +I TV   GY+L   A+
Sbjct: 200 LDEIAERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYMLMNPAE 251


>gi|104779513|ref|YP_606011.1| osmolarity response regulator [Pseudomonas entomophila L48]
 gi|95108500|emb|CAK13194.1| two-component response regulator OpmR [Pseudomonas entomophila L48]
          Length = 246

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  ++    S+ F V      E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLDRFFTSKGFRVRTVPNVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR +    P+ +L+       +++GL+ GADDY++KPFN +ELVAR++A++RR   
Sbjct: 72  ACKRLRASNNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELVARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G  +  +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 SVPGAPGSEEETVTFGDYELSLATRELKRGEETHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 221

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 219

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L   +   LK E + V     G+   E  K   ++ I+LDL L D+ G 
Sbjct: 1   MRLLLVEDDEILGEGLVEGLKMEGYAVDWLTNGKLADEALKINSYELIVLDLNLPDMEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR  K  TPV +L+   ++ D+V GL SGADD++ KPF  +E+ AR+RA+ RR+ 
Sbjct: 61  DILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVCARLRALARRNE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I    + ++  +  V     ++ L+ KE++++  L       +++      LY 
Sbjct: 121 GRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSNIGRVISRARLEESLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E   ++V I  LRKKL       + I TV G GY++ E+
Sbjct: 181 WDSDVESNTVEVHIHHLRKKLD-----PSIIRTVRGVGYIIDED 219


>gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
 gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens AM1]
 gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS,
           regulation of copper resistance [Methylobacterium
           extorquens DM4]
          Length = 232

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +    +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEPQAS 232


>gi|170757163|ref|YP_001781483.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122375|gb|ACA46211.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 233

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S E+ N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R    + P+ +LS  +   DK+ GL  GADDYI+KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRERN-NIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119

Query: 117 RRSRGHAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTVDDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp]
 gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp]
          Length = 245

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E     + + V   +  E    L     F+ ++LDL L    G  
Sbjct: 13  KILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR +    P+ +L+       +++GL+ GADDY++KPFN  EL+ARI+A++RR   
Sbjct: 73  ACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQVP 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  G+  ++L  + ++       LT  E+ +++ L       LT++  
Sbjct: 133 VVPGAPGTEDESVSFGEYELSLATRELKKGDQVHMLTTGEFAVLKALVQHAREPLTRDKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 193 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 243


>gi|322383663|ref|ZP_08057414.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151875|gb|EFX44818.1| two-component response regulator YycG-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 241

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLT-DIP 58
           M++L++ED++A+   + + LK +   V   + GE+ I L +   +    ILD+ L  ++ 
Sbjct: 6   MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 65

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V   LRV      + +L+  S   DKV GL+ GADDYISKPF+  ELVARI A+ RR
Sbjct: 66  GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 125

Query: 119 SRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  A+    +++  G   ++LD + +   G  I LT  E+ ++ +     N +++++  
Sbjct: 126 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++      + KI+DV I ++R+K+        YIETVWG GY+ + +
Sbjct: 186 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 235


>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 115/223 (51%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L+   +  +    G++ +     +    I+LDL L    G  +
Sbjct: 5   ILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWLADHAPALILLDLMLPGTDGLTL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +     + PV +L+      D++ GL+ GADDYI KPF+  E+VAR++A++RR    
Sbjct: 65  CRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRRLHPQ 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +       LS++ D      QG  + LT  E+Q+++++        +++  ++H+Y   
Sbjct: 125 TEEAATPAPLSLDEDGWRALAQGTDLGLTAVEFQLLKVMMQAPGRIFSRDQLMDHMYRDH 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + +D  I KLR+K+++A   ++ I +V+G GY  + ++
Sbjct: 185 RIVSERTVDSHIKKLRRKIADAYPERDIIHSVYGVGYKYQPDS 227


>gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator
           [Geobacter metallireducens GS-15]
 gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator,
           winged helix family [Geobacter metallireducens GS-15]
          Length = 223

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+K  A  ++       F+      GEDG+ L +   +D +ILD+ L    G+
Sbjct: 1   MRILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR      PV  LS   +++D+VRGL+ GADDY+ KPF   EL+AR R I+RR  
Sbjct: 61  SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L        G  + LT KE+ ++ LL  RK   L++ +  + ++ 
Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  I+DV I +LR+K+ +    +  I TV G GYVL
Sbjct: 181 INFDSDTNIVDVAIRRLRRKV-DDPFERKLISTVRGAGYVL 220


>gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   +  +    +           G  G +      +D +I+D  L  + G 
Sbjct: 1   MRILIVEDDPEASQYMVKAFREAGHLADHAGDGLAGYQKACEENYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  KI TPV ILS +  ++D+V+GL+SG DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  SLIGGLRAQKIETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALARRKP 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++   G L ++  A  +   G  I L  +E++++E L       +T+ M L H+
Sbjct: 121 PGTAEETIYRIGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTMLLEHV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D   +P+  +IDV I +LR K+ +       ++T+ G GY++R++
Sbjct: 181 WDYHFDPQTNVIDVHISRLRSKI-DKGFDPPLLQTIRGIGYMIRDS 225


>gi|67458448|ref|YP_246072.1| transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
 gi|67003981|gb|AAY60907.1| Transcriptional activator protein CzcR [Rickettsia felis URRWXCal2]
          Length = 237

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE++  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEEEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G  SG DDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+     +SVNLD +TVEV G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHVASVFRFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+T+WGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTIWGRGYMLKE 223


>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 236

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD  L   +   L  + ++V     G +     +    D IILDL L    G
Sbjct: 1   MKTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGEDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R  + +TP+ +L+      D++ GL+ GADDY+ KPF+  EL+ARIR+I RRS
Sbjct: 61  LALCRTIRARQ-TTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRRS 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      +     +++L A+ +       I L+  E+++++ L+   NT L+++  
Sbjct: 120 EQQNQAQPPRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSRDQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ L     +P  + IDV + +LR++L + A     I+T+   GY+L
Sbjct: 180 MDALAGREADPLDRTIDVMMSRLRRRLGDDAREPTLIKTIRNEGYML 226


>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
           MV-1A-US]
 gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
 gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 228

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G++ I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227


>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
 gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
           NATL1A]
          Length = 265

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 10/245 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ +  I+DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRTNRAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L     D+  
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPTGDKIS 240

Query: 231 EYLET 235
           E   +
Sbjct: 241 EIQPS 245


>gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain
           and a winged-helix DNA-binding domain [polymorphum
           gilvum SL003B-26A1]
 gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Polymorphum gilvum
           SL003B-26A1]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDDK  A  +   L+           GE+G+E     ++D +I+D  L    G 
Sbjct: 1   MRILIIEDDKQAAAYLAKGLREVGHVADHAADGEEGLERALDGDYDVMIVDRMLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ ALR A   TPV ILS +  ++D+V GL++G DDY+ KPF   EL+ARI A+ RR +
Sbjct: 61  SVIEALRKAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALGRRPK 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G  +++    DL ++         G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 ASGETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTRTMLLENV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV I +LR K+         + T+ G GY +R+ A
Sbjct: 181 WEYHFDPQTNVIDVHISRLRAKIDKDFDRP-LLHTIRGAGYSIRDAA 226


>gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 225

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 7/225 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++IEDD ++A      L+ + F   +   G +G+      +FD I+LDL L  I G+E+ 
Sbjct: 1   MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGIDGYEIC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R +R  K   P+ +++      DK+RGL  GADDYISKPF+  ELVAR++A + +     
Sbjct: 61  RKIR-GKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLT 119

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G + +N     V +  H +    KEY+++  L    +   +KE     
Sbjct: 120 TGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      ++K + V I +LR+K+        YI+TVWG GY  +
Sbjct: 180 IWGMDAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGTGYHFK 224


>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
           JL354]
          Length = 229

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +++L+EDD ALA  +E    +E + V VT  G++ + +      D IILD  +    G E
Sbjct: 5   KLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR  K +   P+ +L+   + +D+VRGL++GADDY++KPF+  EL+AR+ A++RR 
Sbjct: 65  VCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   I  GD+ ++  A  VE +G  + L   EY++++          ++   L+ +
Sbjct: 125 RPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E++ +DV I +LRK L    G  + I TV   GY L 
Sbjct: 185 WGTGSDIELRTVDVHIRRLRKALE-LEGASDPIRTVRSAGYALE 227


>gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 225

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L    ++D I+LD  L  + G 
Sbjct: 1   MKILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++ +  G+L + L  + V + G+ + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G   IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223


>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
          Length = 229

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 128/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G++ +       +   IILDL + +I G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVIKRVRKDS-DIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G        ++  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G+  I+TVWG GY + ++
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 229


>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
           zooepidemicus]
          Length = 228

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  V  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +E  L  +   V +   G + +EL +  E D ++LD+ + ++ GF 
Sbjct: 14  KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  +R      P+ +L+ +  + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR+  
Sbjct: 74  VVERIRAQS-EVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRANT 132

Query: 122 HA----------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                        +++V GDLSV+ + +       RI LTG E+ ++ELL  R    +++
Sbjct: 133 SQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPISR 192

Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              L  ++  + E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 193 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMFQ 245


>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli DH1]
 gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
          Length = 260

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  + +V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|163940332|ref|YP_001645216.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229011818|ref|ZP_04168999.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
 gi|229170277|ref|ZP_04297956.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|163862529|gb|ABY43588.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228613200|gb|EEK70346.1| Sensor histidine kinase [Bacillus cereus AH621]
 gi|228749449|gb|EEL99293.1| Sensor histidine kinase [Bacillus mycoides DSM 2048]
          Length = 231

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 113/217 (52%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N+Y    G++ +++   YE D ++LD+ +    G EV + +R    + 
Sbjct: 16  ELLAVYLRNEGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEVCQEVRENN-TV 74

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-------RGHAQSL 126
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS       + +   +
Sbjct: 75  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGI 134

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I    + ++    TV+V G  I LT  E+ ++ LL+       + E     +++      
Sbjct: 135 IRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 194

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+  I TVWG GY + +
Sbjct: 195 NKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231


>gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 228

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +   + + LK+E +       G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNLSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IDVVKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  V+G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227


>gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  +   I+  L  EN        G +   +     FD IILD+ L D  GF+
Sbjct: 5   KVLLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIMLDDTDGFQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ ++   I  PV  LSG     DK+  L  GADDYI+KPF+   L+A+I+A +RRS  
Sbjct: 65  LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   I      +N+D   +   G  I L+ KE  +++      N   TKE    
Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +   I V+I  LRKK+ + +    YI+TVWG GY  
Sbjct: 185 KVWN-NTIIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGYKF 228


>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 14/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  LA  +   L+   + V+  + G   ++L + ++ D ++LD  L  + G E
Sbjct: 12  KILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR +  +TPV +L+  S   D+V GL+ GADDY++KPF+  ELVAR+RA++RR+  
Sbjct: 72  VLRRLRQSS-ATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRRAEL 130

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R  A   +  G+L +N     V + G  + L+  E+ +++LL        ++
Sbjct: 131 IKLTISADRRVASEELCLGNLRLNPQTHEVTLDGALLDLSPTEFALLQLLLRSPGRAFSR 190

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  L+ G      + +D  + +LRKKL         IET+WG GY L   A
Sbjct: 191 SYLIETLWSGTYIGGDRSVDNVVLRLRKKLGKLGDS---IETIWGIGYRLHNGA 241


>gi|167464606|ref|ZP_02329695.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 236

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLT-DIP 58
           M++L++ED++A+   + + LK +   V   + GE+ I L +   +    ILD+ L  ++ 
Sbjct: 1   MKVLILEDEEAIRGFVRINLKRKGIEVVEAETGEEAIALIEKDSDIQIAILDVMLPTEMG 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+V   LRV      + +L+  S   DKV GL+ GADDYISKPF+  ELVARI A+ RR
Sbjct: 61  GFDVCEQLRVKYPRMGIIMLTAKSQDTDKVLGLELGADDYISKPFSPVELVARINALNRR 120

Query: 119 SRGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +  A+    +++  G   ++LD + +   G  I LT  E+ ++ +     N +++++  
Sbjct: 121 LQPVAEADEKNILEAGPFIIHLDERKLTKNGKEIDLTPTEFAIVRMFLENPNKSISRDEI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+ ++      + KI+DV I ++R+K+        YIETVWG GY+ + +
Sbjct: 181 LDEVWGRHFIGDFKIVDVNIRRIRQKIEKNPSKPVYIETVWGNGYLWKRD 230


>gi|152981360|ref|YP_001351713.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281437|gb|ABR89847.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED+      ++  L  +   V V + G DG  L    ++DAI+LD+ L    G 
Sbjct: 1   MKILLIEDEVKTVAYLQRGLTEQGCIVDVANNGIDGQHLALTGDYDAIVLDIMLPGRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ALR  K STPV +L+    ++D++ GLQ+GADDY+ KPF+  EL+AR++A+ RR R
Sbjct: 61  EVLQALRRQK-STPVIMLTARGEVDDRIHGLQTGADDYLVKPFSFLELLARLQALGRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++L A+       R+ LT KE+ ++  L+  +   L+K + +  ++D
Sbjct: 120 PQESTHIRIADLHIDLIARRAMRGVRRLDLTAKEFALLAALARHRGQVLSKTVIVEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              E    +++V I +LR KL +       + T+ G GY+L E ++ + 
Sbjct: 180 VNFESNTNVVEVAIKRLRAKL-DEPSEVKLLHTIRGMGYLLEERSEADA 227


>gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 226

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +   ++  LK+  F   V + G     L    +FD +ILDLGL    G  
Sbjct: 3   RILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGLPRKDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR +R      P+ +L+    ++D V+ L+ GA+DY++KPF  EEL+ARI+  +R  R 
Sbjct: 63  VLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRRI 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +++ +  G+LS++L  +   V    + L+ KE+ + E+L       ++KE  LN 
Sbjct: 123 GAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLNR 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   II+V+I  LR+K      G  YIETV G GY L
Sbjct: 183 VWGYDYDPGSNIIEVYIRHLRRKF-----GSQYIETVRGMGYRL 221


>gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 88/222 (39%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEMFDLVILDLGLPRLGGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   + ED++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY+++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +EPE   ++V I  LRKKL N       I TV G GY++ 
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVE 217


>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 118/219 (53%), Gaps = 5/219 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD +LA  +   LK E + V +   G   +E      FD ++LDLGL  + G  
Sbjct: 8   RILVVEDDLSLADGLVTALKREGYTVDLLHDGIHALEALANEVFDLVVLDLGLPRLDGLA 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR  + + PV IL+   ++ED+V GL  GADDY+ KPF+  EL AR RA++RRS G
Sbjct: 68  VLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLRRSYG 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A S I    L +   +  V  Q   ++LT +EY ++  L  +     T+++    +Y  
Sbjct: 128 RAISEIHYKGLVLFPASHKVTYQDKDVNLTRREYSLLHELVSQPGHVFTRDVLQQLMYGW 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            D+ E   ++V I  LRKKL         I T+ G GYV
Sbjct: 188 GDDVESNALEVHIHHLRKKL-----FPELIRTIRGIGYV 221


>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 248

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFE 61
           ++++EDD  +++ +   L+   F V     G + + +         +++D+ L D+ GFE
Sbjct: 27  VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   L+      PV  LS   +++D++RGL +GADDY++KPF+ EELVARIR I+RR   
Sbjct: 87  VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGV 146

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S +  G L ++ DA+ V V G  I L+  EY+++  L       +++   L+H++D
Sbjct: 147 LTEASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWD 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E  +++ FI  LRKK+  A      I TV G GY L E 
Sbjct: 207 YGFDGESTVVETFISSLRKKVDTAP--PTLIHTVRGVGYRLSEE 248


>gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52]
 gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395]
 gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33]
 gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51]
 gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80]
 gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52]
 gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587]
 gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3]
 gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51]
 gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457]
 gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33]
 gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395]
 gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2]
 gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2]
 gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395]
 gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426]
 gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9]
 gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33]
 gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286]
 gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236]
 gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10]
 gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101]
 gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27]
 gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757]
 gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4]
          Length = 224

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
 gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family
           protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD   +  I   L+ E   V V   G DG+      ++D +ILD  L ++ G 
Sbjct: 1   MKLLVVEDDTTTSTYIARGLREEGHAVDVVADGRDGLVQATTGQYDVLILDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR A  +TPV +L+ M ++ED++ GL +GADDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRPQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G+L+++L ++ V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P   +++  I +LR K+ +       I+TV G GY + 
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DRPFDVELIQTVRGAGYRIE 222


>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
           Ss046]
          Length = 280

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 58  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 117

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 118 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 176

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 177 AL-NSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 235

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 236 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 276


>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Clostridium sticklandii DSM 519]
 gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Clostridium sticklandii]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   ++  ++ + + V     GE+ ++  K  +   I+LDL L  + G +
Sbjct: 4   KVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMDGTK 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   +R  +    TP+ +L+  +  +DK+ GL+ GADDYI+KPF+ +EL+AR++A+ RR 
Sbjct: 64  VCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTRRY 123

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +Q +    +   +L ++++   V  +  +I LT KE+++++LL+L +   LT+   L
Sbjct: 124 AAPSQPIMDTSLEISELYIDMENYEVFKRNEKIDLTLKEFELLKLLALNRGKVLTRNYLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      E + +DV I  LRKK+ +      YIET+ G GY ++
Sbjct: 184 DKIWGYEYFGETRTVDVHIRHLRKKIEDNDKKPQYIETIRGVGYKIK 230


>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 230

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   ++  ++ E F V     G++ ++         ++LD+ +  I G EV
Sbjct: 5   ILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIMMPIIDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R  K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+AI+RR    
Sbjct: 65  CKSIR-FKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRITPP 123

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + I    L ++++  ++++ G  I+LT KE +++ +LS   N  ++++  L+ ++
Sbjct: 124 ENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDSIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I ++R KL+        I+T+WG GY   
Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLALNGQYNWDIKTIWGMGYKFE 226


>gi|296130228|ref|YP_003637478.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022043|gb|ADG75279.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 240

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +
Sbjct: 3   QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGAASA--DLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRSQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   ++ V++ A         +HLT KE+ ++ +L     T +++E  +  ++
Sbjct: 121 DPADEDELHAQNVRVDVAAHRAFQGERELHLTAKEFDLLRVLVAAAGTVVSRETLMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   K +D+ +  LR+KL + A    YI TV G G+   
Sbjct: 181 GSDPTGSTKTLDMHVSWLRRKLGDDANAPRYISTVRGMGFRFE 223


>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
 gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
 gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. Ch1-1]
          Length = 223

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L+   + V +   G DG+ +     +D ++LD+ L  I G+
Sbjct: 1   MSILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  EIMRALRARR-DLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL +++  + V  +G  I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 TRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +    K  I TV   GY   + +
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DHPFEKKLIHTVRSIGYTFGDGS 223


>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 221

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I  +LK   + V     G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   KILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED++RG +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++ L      V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYLSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KLS       YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKLSID-----YIKTIRGVGYKIEK 221


>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
 gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
           43183]
          Length = 227

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  ++  L+     V       +G+ +  + + D II D+ L D  GF+
Sbjct: 3   KILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQDIIISDIMLPDGSGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ IL+ + + +DK+ G  SGADDY+ KPF+  EL ARI  +++R + 
Sbjct: 63  LCRDIRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKRCQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I   DL V L  K+V   G  I LT KEY ++          LT+      ++D 
Sbjct: 123 PTVECIEYADLKVYLRTKSVSRNGQSIILTPKEYNLLLFFVQNPERILTRTEIAEKVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     IDV+I  LRKK+         I T  G G++ 
Sbjct: 183 HFDTGTNFIDVYINYLRKKIDKNF-NTKLIHTKPGMGFIF 221


>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 265

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120

Query: 117 RRS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS        G+   ++  G L++  +          + LT  E++++  L  R   T+
Sbjct: 121 RRSDRAPVGTSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTV 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 APSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80]
 gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52]
 gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587]
 gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3]
 gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51]
 gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457]
 gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39]
 gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2]
 gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226]
 gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2]
 gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395]
 gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)]
 gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426]
 gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80]
 gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9]
 gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21]
 gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33]
 gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286]
 gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236]
 gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10]
 gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS
           101]
 gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27]
 gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE
           91/1]
 gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT
           5369-93]
 gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385]
 gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757]
 gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae
           LMA3894-4]
          Length = 219

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   +   G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDVQLGQQILSALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY++I          +++   + H+Y 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++RKK+       + I+TV G GY L  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APDVIKTVRGLGYQLHAN 219


>gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 263

 Score =  260 bits (665), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+  A  +    +     V V   GE+G+ L +   +D +++D  L    G 
Sbjct: 38  MRLLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRMLPRRDGL 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 98  ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A ++    DL ++  A      G  I L  +E++++E L       +T+ M L +++
Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV + +LR K+ +       + TV G GY++R+  +
Sbjct: 218 DYHFDPQTNVIDVHVSRLRSKI-DKGFDPPLLHTVRGAGYIIRDGVR 263


>gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 233

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+K++   +   LK E + V     GE+ +     +    +ILDL L  + G++
Sbjct: 4   KILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPVMNGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + L     +  + +L+    I DK+ GL+ GADDY++KPF+  EL+ARI+++VRR   
Sbjct: 64  ICKKL--ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLVRRLNK 121

Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   G     DL++N   +TV ++   + LT  E+ ++ LL        ++E  LN
Sbjct: 122 TIDEKKDIGVITINDLNINKKKRTVSIKNVLVELTPMEFDLLYLLLSNPGIVYSREQLLN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++       + +D  I ++RKKL +    ++ I+TV+G GY 
Sbjct: 182 IIWNMDYVGGTRTVDTHIQRVRKKLGD--SYQDLIQTVYGIGYK 223


>gi|291299360|ref|YP_003510638.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290568580|gb|ADD41545.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 229

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L++E F       GE  +E    +  D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLGIVLRTEGFTPVFVTDGEQALEAFHEHRPDVVLLDLMLPGMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R+     P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR   
Sbjct: 64  VCKQIRLESG-VPIVMLTAKSDTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRGDD 122

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A   +  G     +S+++ A +  + G  + LT  E+ ++  L+ +     T+E+ L  
Sbjct: 123 VAPERLQIGRPGLQVSIDVPAHSATLNGVEVKLTPLEFDLLVALARKPRQVFTREVLLEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++  R   + ++++V + +LR K+         I+TV G GY 
Sbjct: 183 VWGYRHAADTRLVNVHVQRLRAKIEPDPENPQLIQTVRGVGYK 225


>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L L+ +N +V  T  GE+G++  + +  D ++LDL L  + G E
Sbjct: 3   RVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMTGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ + +      D V GL++GADDY+ KP     L ARIRA++RR+ G
Sbjct: 63  VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   GDL+V+    TV + G  I L   E +++  LS       +++  L
Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++     + +++D  + +LR K+S       YI TV G GY  
Sbjct: 183 EAVWEHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGYRF 228


>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 234

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +A  I   L+   + V     G + +   +    D +ILDL L  I G +
Sbjct: 11  KVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGMD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + ++  K S P+ +++  S   + V GL+ GADDY+ KPF+  EL+AR+R+++RR++ 
Sbjct: 71  LCKKIKE-KYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  I  G++ +NL A    +    + LT  EY+++ L         T++  L+
Sbjct: 130 GEEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLD 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV I +LR KL +    K  +ET+ G GY   E
Sbjct: 190 RVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 233


>gi|332534920|ref|ZP_08410740.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035655|gb|EGI72145.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 230

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V D G++     +    D +ILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVEVLDRGDEVFNYLENNTPDLMILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKFTLPILMLTAKGEDFDQVLGLELGADDYVIKPAEPRVLLARINALLRRGQP 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  GDL ++  ++ V++    I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 IVKSSEELQFGDLVIDKTSRIVKLSDSEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + +   + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLDRTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acinetobacter calcoaceticus PHEA-2]
          Length = 223

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-RIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYELKLIHTIRGLGYKI 219


>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 240

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+  +   + + L+ E++ V     G + ++  + +  D ++LD+ + ++ GF
Sbjct: 11  MTILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGF 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E L+A+R    + PV +L+   S +DK+RGL  GADDYI+KPF+  EL++RIRA++RRS 
Sbjct: 71  ETLKAIREVS-TVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRRSL 129

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++V  DL ++   + V V+G ++ L   EY+++  L       +T E  L+
Sbjct: 130 MSPPARKTEIVVDEDLQIDFARREVMVRGKKVVLRPTEYRLLYHLVSNAGRLMTHETLLS 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E   + ++I  LR+KL        YI T  G GY  +E
Sbjct: 190 KVWGREYRDEAHYLRLYITYLRQKLEEDPAHPKYILTERGIGYRFKE 236


>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
 gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
          Length = 220

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 118/222 (53%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K + + +++ L +  + V     GE+ + +     FD ++LD+ L    G+ 
Sbjct: 3   KILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           + R ++    S PV I++   +  D+V G + GADDYI+KPF+ +  +AR++ I++ +S 
Sbjct: 63  ICREIKE-YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSN 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + I  G+L +N  + +V      + L  KEY+++      KN  L++E  L  ++ 
Sbjct: 122 ININNEIEIGNLKINDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  +I+DV I  LRKK+ +      YI+T+   GY   
Sbjct: 182 YDYTGNDRIVDVHIKNLRKKIGD-----EYIKTIRSVGYKFE 218


>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
          Length = 369

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   I+ +L+ E + N+      E+ I + K  + D I+LD+ +  + GFE
Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 197

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 198 ACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 256

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++           + +     + V G  +  + +  Q+++      N  L+K+     
Sbjct: 257 SKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 316

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I KLR+K         YI TV G GY    N +
Sbjct: 317 VWGYPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIPNPE 365


>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 229

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58
           M+IL+++DDK +   +++ +K+E +       G++ +      + D   +ILD+ + ++ 
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHT-DPDIKLMILDIMMPEMD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V+R +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RR
Sbjct: 60  GMQVVREVRKDS-ELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 119 SRGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       A  ++  G L++N D+  V  + G  + LT  E+ ++ LL+   N   + + 
Sbjct: 119 SEKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADE 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               ++        K + V +  LR K+  A GG+  IETVWG GY 
Sbjct: 179 IFERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
           processes (YvrG) [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
           (paired with YvrG) [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 248

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYV-TDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   I+ +L+ E +   +     E+ I + K  + D I+LD+ +  + GFE
Sbjct: 17  ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 77  ACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 135

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++           + +     + V G  +  + +  Q+++      N  L+K+     
Sbjct: 136 SKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEK 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V I KLR+K+        YI TV G GY    N +
Sbjct: 196 VWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPNPE 244


>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
 gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 227

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+I+D+  +   +E+ L +E F V     G  G+ L K      +ILD+ +  + GF
Sbjct: 7   IKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+    +  + +L+    +ED+V+GL  GADDY++KPF+ EEL+ARI A +R   
Sbjct: 67  EVCRMLK-KSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V G   ++   K ++ Q   + L+  EY++++ L L +   L+K M L+ ++ 
Sbjct: 126 PTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +  I++V+I  LR+KL +       I T+ G GY +
Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGD--KEHRLIRTLRGSGYRM 224


>gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
 gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira
           defluvii]
          Length = 227

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/224 (39%), Positives = 122/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA  I   LK E + V V   GE G EL     +D IILD+ L  + G 
Sbjct: 1   MRILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIMLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR   ++ PV +L+   +++DKV GL  GADDY++KPF   EL+AR RA++RR  
Sbjct: 61  SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++     V   G+ I LT KEY ++E L   KN  LT+   + H++D
Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +P   I+D  I  LR K+         I TV G GY+L + 
Sbjct: 181 ISYDPMTNIVDAHIRSLRAKMDRDFS-PALITTVRGAGYMLEDE 223


>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 268

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+   + V   + GE  + L    + D ++LD+ L  + GF V
Sbjct: 26  VLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGFAV 85

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+RR    
Sbjct: 86  CRRLRAESC-VPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q ++  GDL V+ + + V  +G RI LT  E+ ++ELL       + +
Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204

Query: 172 EMFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              L  L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254


>gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 224

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++   I   LKS  +     D  E   +  +    D ++LD+ L    G E+
Sbjct: 2   IYCVEDDRSIRELIIYALKSNGYEAVGFDKAEPFYKELENKLPDLVLLDIMLPGEDGIEI 61

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +    + PV +L+  S+  DKV GL SGADDYI+KPF   E ++R++A++RRS 
Sbjct: 62  LKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVLRRSG 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S I  G L++ +D   V   G  + LT KE+++++ L       LT++  L  ++
Sbjct: 122 NVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLLEEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E + +DV I  LR+KL  A      IETV G GY +
Sbjct: 182 GYEYEGETRTLDVHIRTLRQKLGEAGA---IIETVRGVGYKI 220


>gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response
           transcriptional regulator PhoB [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 241

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDDK +   +   L    +     D  E    L +    D  ++D  L    G  
Sbjct: 10  QVLVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLA 69

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   LR        P+ +L+      D+V GL+ GADDYI KPF+ +ELVAR+ A++RR 
Sbjct: 70  LTGRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRC 129

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +  G + ++  +    V G RI LT  E++++  L        +++  L+++
Sbjct: 130 APEFVKGTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E + +D+ I +LR  L      +  +ETV G GY L   A+
Sbjct: 190 WGDHVYIEDRTVDIHIRRLRVALG--PAAEQMVETVRGVGYKLIGRAE 235


>gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
 gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum
           ATCC 6940]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L++E F       G + +   +  + D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    S P+ +L+  +   D V GL+SGADDYI+KPF  +EL+ARIRA +RR+  
Sbjct: 64  ICRAIRTES-SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   LI  GDL +++   TV    G  I LT  E+ ++  ++ +     T+E  L  ++
Sbjct: 123 ASSGELIEVGDLVIDVPEHTVTRAGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 GYRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 223


>gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
 gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family
           protein [Oceanicaulis alexandrii HTCC2633]
          Length = 223

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A +I  ML+     V +   GEDG+ + +   FD +I+D  +    G 
Sbjct: 1   MRILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  +LS +  ++D+V GL +G DDY+ KP+   EL AR+ A+ RR  
Sbjct: 61  SMISILREEGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L A+TV+     I L  +E++++E L       +T+ M L  ++
Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +IDV I +LR K+ +     + + TV G GY L
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKPFDTSMLHTVRGAGYRL 221


>gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 224

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK   + +   L+ E   V +   G+D +       +D +I+D  L  + G 
Sbjct: 2   MKILVVEDDKMTGNYVAEGLREEGHTVDLMTDGKDALLQASTTSYDILIVDRMLPGLDGV 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ +R  K  TPV  L+ +  ++D++ GL +G DDY+ KPF   EL AR+ A+ RR R
Sbjct: 62  SVVKTMRGTKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G    + +  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 122 GTQDEIVLRAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +++  I +LR K+ +       I+TV G GY + E
Sbjct: 182 DISFDPQTNVVETHISRLRAKV-DKPYEVELIKTVRGAGYRIEE 224


>gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 223

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 135/222 (60%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +A  I   L+ E + V V   GE G+++      D IILD+ L  + G 
Sbjct: 1   MRLLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQLPRLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR+LR  +ISTPV +L+  ++IEDKV GL +GADDY++KPF+  ELVAR+RA++RR  
Sbjct: 61  ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q+ +   DL+++    TV     +I LT KE+ +++      +  LT+ M   H++D
Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +IDV++  LR+K+ +       I TV G GY+L+
Sbjct: 181 YDFDSMTNVIDVYVNYLRRKIDSD-REPKLIHTVRGVGYMLK 221


>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   I+  +  E+ +      G DG+ + +  ++  I+LD+ +  + GF+
Sbjct: 4   KILVIDDDKELCALIKQSVAVESIDADHCYSGTDGLAMLQKNDYQLILLDVMMPGLDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R  K S P+ +L+  +    K+RGL+SGADDY++KPF+ +EL+AR+ +++RR   
Sbjct: 64  TMEKIRQ-KSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + G     +    L++++D+++V  Q     L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNTTGDHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKK+ + +    YI+TV G GY   +  
Sbjct: 183 EVWGESYVYDDSNIMAIISRLRKKIESDSSAPYYIQTVKGIGYRFNKEV 231


>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 230

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +E+ L++E F V     G + + + K ++   +ILD+ +  + GF
Sbjct: 10  IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+  + +    +L+    +ED+V+GL  GADDY+ KPF+ EEL+ARI A +R   
Sbjct: 70  EVCRMLKKIQ-NVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHY 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  S +  G   ++   K +   G  + L+  EY +++ L       L+K M L++++ 
Sbjct: 129 PHLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR KL++       I T+ G GY 
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLND--RQHRIIRTLRGAGYR 226


>gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
 gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
 gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8802]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 126/228 (55%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MRILL+ED+  L ++I+  L   N+ V     G++G++  +     +   I D  L  + 
Sbjct: 1   MRILLVEDESDLGNAIKRTLIQHNYIVDWAQDGKEGLDYLEIGLSHYTLGIFDWLLPKLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +++R +R  K S P+ +L+   S EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GVDLIRKVRQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-----IHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       +  G+L+++    T+  Q        I LT KE+Q++E      N  +T++ 
Sbjct: 121 SPQINPQQLKVGNLTLDYSTYTIFCQDKEGDNQTIALTNKEFQLLEYFLHHPNQIVTRDQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ L++   EP   ++   I  LR+KL+   GG N+IET++G GY  
Sbjct: 181 LLSQLWEWESEPMSNVVAAQIRLLRRKLAPY-GGDNWIETIYGLGYRF 227


>gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis
           RB2256]
 gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family
           [Sphingopyxis alaskensis RB2256]
          Length = 232

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD+A+A  I      E F+V  T  GE  + L +    D ++LD  +  +PG EV
Sbjct: 6   LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEV 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+     ED++RGL++GADDY++KPF+  ELVAR+ A++RR R
Sbjct: 66  CRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLR 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A  ++   D+ ++  A  V   G  + +   E++++           ++   L+ ++
Sbjct: 126 PALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E++ +DV I +LRK + N  G  + I TV   GY L
Sbjct: 186 GQDSDIELRTVDVHIRRLRKAI-NLPGTSDIIRTVRSAGYAL 226


>gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 225

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 129/220 (58%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   +  ++  L+   + V +   G +G+ L K  E+D I+LD+ L  I G+
Sbjct: 1   MRILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVMLPSIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + +TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R + RR  
Sbjct: 61  TVLKTLRATQ-TTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL V++  + V+  G RI LT KE+ +++LL  R+   LT+    ++++D
Sbjct: 120 PRENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  +++V I +LR K+ +    K  I TV G GYV
Sbjct: 180 MNFDSDTNVVEVAIRRLRGKVDDDFPVK-LIHTVRGVGYV 218


>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
 gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  ++  L+   +  +V   G  G+ L K + F  +I D+ L  + GFE+
Sbjct: 4   ILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARI+ +++R+   
Sbjct: 64  CKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLKRNTEQ 123

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   +L ++L    V      + L+ KEY ++  ++      +++     +++
Sbjct: 124 TAPEPEQLTYANLRIDLRQHEVFRGQTPVRLSPKEYNLLVYMTQHAERVISRMEIAENVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++  +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKPGVGFIFTD 226


>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
           273]
 gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
           [Chlorobium luteolum DSM 273]
          Length = 236

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  +   L+   +    ++ GED  E      F+ I+LD+ L  I GF+V
Sbjct: 6   ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R  +I    P+ +L+      DK+ G + G DDY+ KPF+  EL  RIRA+++R R
Sbjct: 66  CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKRDR 125

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  + +G L V++    V + G  + LT  E++++  L  RK    ++EM L+ 
Sbjct: 126 RQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D       + ID  + +LR+KL         I+TV G GY   E+ 
Sbjct: 186 VWDVDRTINTRTIDTHVTRLREKLGTVGAK---IKTVRGLGYKFEEDG 230


>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
 gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F V     G   +   +    D  +LD+ L DI GF+
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQQIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + QS             L + +++    + G  + LT  E++++  L   + + +  E  
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL+        I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 231

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  + L L  + F V++   G  G+   +     A +LD+ L  + G E+
Sbjct: 11  VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  L+      D++ GL+ GADDY++KPF+  ELVAR+RA++RR+ G 
Sbjct: 71  CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRRTVGV 130

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +   G ++++   +TV V G  I LT  E+ ++  L  R     T+   L  ++
Sbjct: 131 PEGVERVRTVGPVTLDPTRRTVTVSGEPIQLTYTEFDLLAHLMARPGRVFTRGELLAAVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +DV + ++R KL  AAG    I T  G GY
Sbjct: 191 GYAAHSSTRTVDVHVAQVRAKLGGAAG---VIRTHRGVGY 227


>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
 gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
           protein [Roseobacter litoralis Och 149]
          Length = 223

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  +A  +   L +E ++V     GEDG+EL     +D ++LDL L  I G 
Sbjct: 1   MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R LR  K  TP+ +L+ +   E+KV GL+ GADDY+ KPF+ +ELVARI A+ RR+ 
Sbjct: 61  GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G+    + ++I  G ++ +  +  V V+   I LT KE  +++LL       L++E  LN
Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +P   ++DV++ +LR+KL         I T+   GY +
Sbjct: 181 TVWGLNADPLTNVVDVYVGRLRRKLGQEG---QRIVTLRNVGYRM 222


>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 228

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
            +L++ED+ +++  ++  L  E++ V     G   +E+ +  +   D ++LD  +  + G
Sbjct: 4   HVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR ++  + +TP+  L+    I DKV GL +GADDYI+KPF  EEL+AR+R I R+ 
Sbjct: 64  LTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +     L V+L A T EV G  ++LT +E+ ++      +   +++   L+ ++
Sbjct: 124 STSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + +   +D ++  LR K+ +    K+ IETV G GY L +  
Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGVGYRLNDEG 228


>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI R    
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
 gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
           5463]
          Length = 228

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKQVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A GG++ I+TVWG GY + 
Sbjct: 180 FERVWKQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227


>gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
 gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3]
          Length = 233

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 90/223 (40%), Positives = 135/223 (60%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L + N+ V   D GE G+   K Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQSNLKQHLLAANYTVDTADDGEIGLFQGKEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I  P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  ALITELRALTIEFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  +   G  I L+G EY+++E   L      +K +   H+YD
Sbjct: 121 GKASPVINNGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +  +I+VFI +LRKKL +A      IET+ G+GY L +
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKL-DADNQLGLIETLRGQGYRLTK 222


>gi|86610276|ref|YP_479038.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558818|gb|ABD03775.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 247

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           +L+++D+ A+  ++ L L+ + + V     G   +E+       D +ILDL L  + G +
Sbjct: 24  LLVVDDEDAIRETVALALEEQGYQVLQAADGRQALEMVHTVERLDLMILDLMLPSLNGLD 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR    + P+ +L+  SS  D+V GL+ GADDY++KPF   EL+AR R+++RR   
Sbjct: 84  LCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRQQL 143

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++    +++  GDL +      V V+G  +  + KE++++EL         T+E  L  +
Sbjct: 144 AQASDATVLRYGDLCMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLERI 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + K +DV I  LR+KL        Y+ TV G GY  
Sbjct: 204 WGSDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 246


>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 229

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +A  +E+ +K+E +       G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ILS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  IEVVKEVRKDS-QIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +      +  ++  G L++N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QDQVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWRQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227


>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
 gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9605]
          Length = 262

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR    +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL AR++A++
Sbjct: 61  GLTLCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS            ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPVGSTNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 229

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K++   I++ L+ E + VY    G + IEL +    + +ILD+ L  + G+EV
Sbjct: 11  ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              ++   I T V +L+ +  ++DKV+GL  GADDY++KPF+ +EL+ARI A +R S   
Sbjct: 71  CSIIK-KSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPE 129

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +   G+  V+  A  +  +   + L   +Y ++  L +     L+K + L  ++   
Sbjct: 130 LSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYD 189

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E  I++V+I  LR K+ +     N I+TV G GY + 
Sbjct: 190 FNGEDNIVEVYIRYLRDKIGD--KDHNIIKTVRGVGYKMV 227


>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQAQRP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V    +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 242


>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 234

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F+VY  + G + + + +    DA I+D+ +  + GFE
Sbjct: 8   KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 68  LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNA 127

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +   DL++N D   V   G  + L+  E+ ++  L   +   L+K   L++
Sbjct: 128 VDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDN 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 188 VWHYDFGGDGNVVESYISYLRRKI--DTGDTPLIHTVRGVGYVLR 230


>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
 gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ovis ATCC 25840]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADLIRTVRGAGYSF 227


>gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501]
 gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri
           A1501]
 gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 221

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L  + +       G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDNVPLADELVASLSRQGYATDWLTDGRDAEYQGATEPYDLIILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL A R A ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL+ RI+A++RR+ 
Sbjct: 61  EVLHAWRAAGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q ++  G L ++   +     G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +I+V + +LR KL     G+  IET  G+GY  
Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRELIETRRGQGYRF 217


>gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 116/225 (51%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +E  L+ E F++     G + +   +  +   ++LD  L ++ G EV
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWMLPELSGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +     + +++      DK+ GL+ GADDY++KPF+  EL ARIR+++RR  G 
Sbjct: 65  CRELRKSS-RVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEGE 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  + ++  GDL+++     V      I LT  E++++  L+ R     ++   L    +
Sbjct: 124 SVTEEMLKRGDLTISETQCRVWKHDREIPLTPTEFKLLLTLASRPGVVYSRLQLLQAAME 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + +  D  I ++RKK+ +      +I+TV+G GY   +  
Sbjct: 184 DDIHNDERTADAHISRIRKKIEDDPAEPVFIKTVYGFGYRFEQQP 228


>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
 gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
          Length = 227

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L++E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 7   IRVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+    +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A VR   
Sbjct: 67  EVCRMLKKM-ENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G   ++   K ++ +G  + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 126 PNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V++  LR+KL +       I T+ G GY 
Sbjct: 186 YDFAGEENIVEVYVRSLREKLKD--KDHQIIRTLRGAGYR 223


>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 231

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDKA+  ++E+ LK E +NV     G+  ++  +  +   +++D+ + ++ G   
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R   ++ P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  TVKIREE-LNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRRYTQL 124

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G L ++ +AK + V G  + LT  EY ++  L        + +    +
Sbjct: 125 GGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I ++R+K+        Y++ VWG GY + +
Sbjct: 185 VWKEPAYSSENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230


>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
 gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
           animalis subsp. lactis AD011]
          Length = 239

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   L +E +   V   G   ++       D II+DL L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +  A+   PV +L+      D V GL  GADDY+SKPF+  ELVAR RA++RR    
Sbjct: 74  TKRI-EAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDRA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     ++  G L ++   + V + G  +HLT  E+ ++  L+ + ++ LT+E  
Sbjct: 133 KVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL  +      I TV G GY     
Sbjct: 193 LEEVWDWVDASSTRTVDSHVKALRHKLGAST-----IRTVHGVGYAFEPP 237


>gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ]
 gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ]
          Length = 246

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L H +E  L  + + V   +  E    L     F+ ++LDL L    G  
Sbjct: 13  KILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLMLPGEDGMS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR +     + +L+       +++GL+ GADDY++KPFN  EL+ARI+A++RR   
Sbjct: 73  ACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQVP 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  GD  ++L  + +        LT  E+ +++ L       LT++  
Sbjct: 133 VVPGAPASEDEIVSFGDYRLSLATRELMKGDQVQMLTTGEFAVLKALVQHAREPLTRDKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 193 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 243


>gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum
           WAL-14163]
 gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 231

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 110/229 (48%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F V     G + +EL + +  + +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHSVNLMIIDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRETS-SIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   G L +N + K V V G  I LT  EY ++ LL        + +   
Sbjct: 123 GNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231


>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 260

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
 gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
           [Dinoroseobacter shibae DFL 12]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V   + G++ + + +    D I+LD  L  + G EV
Sbjct: 7   VLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIEV 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR R
Sbjct: 67  CRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVR 126

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ ++  V      + L   E++++     +     ++E  L+ ++
Sbjct: 127 PATVGQQLRYDDILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L    GG + + TV G GY L
Sbjct: 187 GRDIYVDTRTVDVHIGRLRKALCQH-GGTDPVRTVRGAGYAL 227


>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 220

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V+  G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti
           1021]
 gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021]
 gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 233

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  + +V  QG  I L  +E++++E L       +T+ M L +++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+         + T+ G GY+++++
Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDD 228


>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
           pyogenes SSI-1]
 gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
           [Streptococcus pyogenes SSI-1]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI  R   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 232

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DDK + +SI L L+ E +       G + +E  +  E   I++D+ +  + G   
Sbjct: 5   VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLDGLSA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  K + P+ ILS  S   DK+ GL  GADDYI+KPFN  EL+AR+R+ +RR    
Sbjct: 65  TLKIRQEK-NIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYTKL 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   L++TG L ++  A TV V G  + LT  EY++++ L +     L+      +
Sbjct: 124 GAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIYEN 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I +LR+K+        YI+ VWG GY++ +
Sbjct: 184 VWHDTPFAPENTVAVHIRRLREKIEINPKEPKYIKVVWGSGYLVEK 229


>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+L+L L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 231

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  + +S+E  L+   F+      G   +         A++LD+ +  + G  
Sbjct: 6   RILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPGLDGVG 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR      P+C+LS  SS+ D++ GL++GADDY++KPF   ELVAR+RA++RR+  
Sbjct: 66  VVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTR 125

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              S    I  G L+V+L      + G RI LT +E+ ++ +L+      L++   L  +
Sbjct: 126 ATPSVDHPITVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 186 WGYDFAADTNVVDVFVTYLRKKLEVD-GAPRVIHTVRGVGFVLR 228


>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
 gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. SK209-2-6]
          Length = 229

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+G+ +      D I+LD  + ++ G EV
Sbjct: 8   VLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    S P+ +LS  S   DKVRGL++GADDY+ KP++  ELVAR+R  +RRSR
Sbjct: 68  CRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRSR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +  GD+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGDDPVRTVRGAGYAL 228


>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ AL   +   L    + V     G +G+ + + Y  D  I+DLGL    G 
Sbjct: 1   MRLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR    + PV +L+     +D+V GL++GADDY+ KPF   EL+AR++A++RR+ 
Sbjct: 61  ELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++    L+++  ++T    G RI LTG E++++  + L +   L+K     HLY 
Sbjct: 121 GWADPVLRCPPLALDTRSQTAWRDGARIELTGSEFRLLHYMMLHQGAVLSKTRLEEHLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  +++VFI +LR+KL    G    IET+ GRGY LR
Sbjct: 181 DAAEHDSNVMEVFIRRLRRKLDPD-GTLQPIETLRGRGYRLR 221


>gi|315127257|ref|YP_004069260.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas sp. SM9913]
 gi|315015771|gb|ADT69109.1| response regulator (activator) in two-component regulatory
           [Pseudoalteromonas sp. SM9913]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V + G++          D IILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVDVLERGDEVFPYLSENHVDLIILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K + P+ +L+      D+V GL+ GADDY+ KP     L+ARI A++RR + 
Sbjct: 63  VCRQVR-DKYTLPILMLTAKGEDFDQVIGLELGADDYVIKPAEPRVLLARISALLRRGQP 121

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  GDLS++  ++ V++ G  I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 SVKAIEELQFGDLSIDKTSRIVKLSGVEIVLTSHEFELLWLLASNAGEVLSREHVHQHMI 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GREYDGLDRTVDVRVSRIRKKLGDNSDKPYRIKTVWGQGYLFVSDAWD 229


>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDGIRA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 68  TLKIREES-SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                ++ S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 127 GNAAENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 187 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58]
          Length = 232

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 231


>gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 229

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +   I+L L+++ + ++     +  +E+    + +  I+DL +    G+
Sbjct: 2   INILIVDDEKEIVDLIDLYLRNKGYCIFKAYDSDKALEILNLEKINLAIMDLMMPGTDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++++ +R    + P+ I+S      DKV GL  GADDYI+KPF+  EL+AR+ A +RR  
Sbjct: 62  DLIKKIRSTS-NIPIIIISAKCENHDKVIGLDIGADDYITKPFDPLELIARVNAQLRRCY 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +++I + DL ++ D   V   G  + LT KE++++EL    KN  LTK+   
Sbjct: 121 LLNLEDNNENIIKSRDLILDKDKIIVTKGGKEVFLTLKEFKLLELFMENKNKVLTKQRIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      +  +I V I  LR K+ +      YI+T+ G GY   E
Sbjct: 181 ENIWKEEYLYDDNVIMVHISNLRDKIEDNNKENKYIKTIRGIGYRFEE 228


>gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
 gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC
           27755]
          Length = 224

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++  F     + G++ +E       + I+LD+ L  + G E+
Sbjct: 2   IFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLEL 61

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  L+        PV +L+   +  DKV+ L +GADDY++KPF   ELV+RI+A++RR++
Sbjct: 62  LSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRTQ 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q +IV GD+ +N     V   G  + LT KEY++++ L    N  +T++  L  
Sbjct: 122 KDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E + +DV +  LR+KL  +      IETV G GY + E
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGKSGEK---IETVRGVGYRMSE 224


>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
 gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++++ + I   L+   + V+V   G +G+        D ++LDL L  + GF 
Sbjct: 4   KILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLMLPKMNGFT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V   LR     TP+ +L+ +   + +++G  + ADDYI+KPF+   ++  I A++RR   
Sbjct: 64  VCEILRKES-RTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S+I      ++ D+ +V+V G  + LT +E+++++ L   +    T++  L+ ++
Sbjct: 123 AASEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D     + KII+  I  +RKKL        YIET+ G GY + + 
Sbjct: 183 DYDYVGDEKIINTHIKNIRKKLGVD-----YIETIRGVGYKIEKE 222


>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 229

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  +IE+ LK+  ++VY    G + +++    +   +++D+ +  + G   
Sbjct: 4   ILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSNDIQLVLMDVMMPQMDGITA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R +  + PV +L+  S   DKV GL+ GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 64  MAKIRESS-NVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQL 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +V G + ++  +K V + G  + LT  EY +++LL        + +     
Sbjct: 123 GGGETPKDKLVIGGIELDDKSKQVTLDGELMPLTPTEYDILKLLMQNVGKVFSTKEIYKA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++          + V I  LR+K+        YI+ +WGRGY + 
Sbjct: 183 VWKEDPMGAEGSVAVHIRHLREKIEINPSDPRYIKVIWGRGYRME 227


>gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 218

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L ++I   L   ++       GE  +   +   F  +ILD+ L  I G 
Sbjct: 1   MRVLLVEDDPMLGNAITASLARHHYTADWVTSGESALHALQTDSFLLVILDISLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR     TPV ILS    + D+V GL  GADDY+ KPF  EEL+AR+ A++RRS 
Sbjct: 61  KVLKELRSKGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV GD+SV++++  V V G  I+LT  E++++  L       L+K   L +++ 
Sbjct: 121 GMADDTIVVGDVSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   +  I+V I  LRKK+      K  IE + G GY+++
Sbjct: 181 WDESAGLNSIEVHIHNLRKKM-----PKGTIENIRGVGYIIQ 217


>gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD A+A  + + L+ + F V V   G   +   +     A+ LD+GL    G E+
Sbjct: 11  VLIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGLPGKDGIEL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR A   TPV  ++      D++ GL+ GADDYI+KPF+  EL AR+R ++RR+ G 
Sbjct: 71  CTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRRASGG 130

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G + ++   + V      + LT  E+ ++  L         +E  L+ ++ 
Sbjct: 131 SAATEALTVGAVRLDPARRRVWAADAEVELTVTEFDLLASLMRNPGQVFAREQLLSAVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                  + +DV I +LR KL + +     I TV G GY
Sbjct: 191 YTASAGTRTVDVHIAQLRGKLGDHS----PIRTVRGVGY 225


>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 221

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD ++   ++   +     V     G  G EL      DA I+D+ L  + G 
Sbjct: 1   MRILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R L+   +  PV +L+ +   EDK +G + GADDY++KPF  EEL+ R++A+ RR +
Sbjct: 61  ELCRRLKAT-LDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S I  G L ++L    V ++G   +L  KE++++  L+        +E  +  ++ 
Sbjct: 120 RSAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E + + +DV I +LR +  + A     I TV G GY L  N 
Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPALT---IRTVRGVGYALEVNG 221


>gi|159898827|ref|YP_001545074.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891866|gb|ABX04946.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 115/212 (54%), Gaps = 2/212 (0%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
           AH ++L L+   F  Y+   G  G+ L + ++   ++LDL L  + G  V + +R    +
Sbjct: 15  AHWMQLYLEQAGFTTYLASDGLAGLALVQQHQPSLVVLDLMLPKLDGLAVFKTIRQTS-N 73

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-HAQSLIVTGD 131
           TP+ +++  SS E+++ GL+ GADDY+ KPFN  ELVAR+RA++RRS+   A  ++  G 
Sbjct: 74  TPIIMVTARSSDEERIHGLELGADDYVGKPFNARELVARVRAVLRRSQPIQASQMLKRGP 133

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           + ++L+  +  V    + L+  +  ++       N  L++E  L  ++ G      + +D
Sbjct: 134 IELDLEQHSCTVNQQPVELSKIQLALLATFMRHPNQILSREQLLEAVFAGDYAGFDRSLD 193

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             I +LR+++ +      YI TV+G GY   +
Sbjct: 194 AHIARLRQRIEHDRTNPQYIVTVYGLGYKFVD 225


>gi|91786119|ref|YP_547071.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695344|gb|ABE42173.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 240

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  LA  +   L+   +       G  G+   +    D +ILDL L D+ G E
Sbjct: 4   QLLMIEDDSRLAAMVGEYLRQSGYGFTHAADGASGLAALQASPPDLVILDLMLPDMDGLE 63

Query: 62  VLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           V R ++        T V +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++RR
Sbjct: 64  VCRRIKSQGSESAHTAVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLRR 123

Query: 119 SRGHA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                           ++  G L ++ DA+TV + G+   LT  ++ ++  L+ R    L
Sbjct: 124 GGEANGAGGAAAGGHKVMRFGSLEIDRDARTVSISGNLCELTSYQFDLLVALAERAGRVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++  +  +     E   + IDV + ++R  +         I TV G GYV  + 
Sbjct: 184 SRDQIMEAVRGRELEAFDRSIDVHMGRIRSAIEADPKDPKRILTVRGVGYVFAKQ 238


>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
 gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
           14266]
          Length = 234

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + LK + F V     G   +E+   ++ DA ILD+ +  + GFE
Sbjct: 7   KVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMPGMDGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      PV  L+   ++E ++ GL  GADDY++KPF+ EE++ R+R I+RR   
Sbjct: 67  LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+     +++   DL +N D   V   G  + L+  E+ ++  L L     L+K   L+
Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++      +  +++ +I  LR+K+    G    I TV G GYVLR+ 
Sbjct: 187 NVWHYDFGGDGNVVESYISYLRRKI--DTGDVPLIHTVRGVGYVLRKP 232


>gi|319408250|emb|CBI81903.1| two-component response regulator [Bartonella schoenbuchensis R1]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E       +   +   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDRETGRYLEKAFLEVGYTADIACDGDTGYSLAETGNYDVMVVDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+ARI  + RR S
Sbjct: 61  SIVSELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFLELLARIEVLQRRKS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGGINIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   +P+  +IDV I +LR K+         + TV G GY+L+  A D+T
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDIP-LLHTVRGAGYMLK--APDKT 227


>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI  R   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|160936708|ref|ZP_02084075.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440499|gb|EDP18244.1| hypothetical protein CLOBOL_01599 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ +A      L++  F V +   G +G+       +DA+ILD+ L    GFE
Sbjct: 3   KVLIVEDDELIAELERDYLEAGGFEVELIFDGNEGLNRAMAGGWDALILDVMLPGKSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------- 114
           V R +R   +  PV +++      DK+RGL  GADDY+ KPF+  ELVAR+++       
Sbjct: 63  VCREVR-KSLHLPVIMVTAKKEDVDKIRGLGLGADDYLVKPFSPAELVARVKSHIQIHER 121

Query: 115 IVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           ++       +  I+  +L++    + V + G  ++L  KE++++  L+   N   +K+  
Sbjct: 122 LLEHREQQKEDAIIVKNLAIRPKERRVYLNGEEMNLANKEFEVLLFLAENPNIVFSKDTL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + ++          + V I +LR+KL   A    +IETVWG GY  +
Sbjct: 182 FDRIWGMDSVGNTATVTVHINRLREKLEKNADSSPFIETVWGAGYRFK 229


>gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
 gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Kytococcus sedentarius DSM 20547]
          Length = 222

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+K LA  +   L+   + V +T  G   ++  + +E D ++LDLGL  + G EV 
Sbjct: 2   LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGMDGIEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R +R       V +L+       ++ GL  GADDYI+KPF+  ELVAR+ A++RR R   
Sbjct: 62  RRVRAFS-ECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTTV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +   V GDL ++L A    V G  + LT  E+ ++  LS R +   ++   ++ ++D
Sbjct: 121 SAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + +++DV I  LR+KL        YI+TV G GY + E 
Sbjct: 181 PAWVGDERLVDVHIKNLRRKLDADPA--RYIDTVRGVGYRMAEQ 222


>gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 220

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD  +A  +   L++  + V     GE  + + +  E D I+LD+GL  + GF 
Sbjct: 3   RILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPAMDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR   +STPV +L+   S+ D V GL+ GA+DY++KPF   EL+AR+R  +     
Sbjct: 63  VLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDAP 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  ++ + TGDL ++L ++ V+V    I LT +E+ ++E+     +  L++E  L H++
Sbjct: 123 AAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P   ++DV++  LR K+     G   +ETV G GY LR
Sbjct: 183 GYDFDPASNVVDVYVRALRTKI-----GAQRLETVRGMGYRLR 220


>gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 219

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +             L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+     ++V I  LR+KL     GK+ I TV G GY L   
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLEAP 219


>gi|319790958|ref|YP_004152598.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315593421|gb|ADU34487.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 240

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  LA  +   L    F       G  G+E  + +  D +ILDL L D  G E
Sbjct: 8   QLLMIEDDARLAQMVGEYLTQSGFAFNHAGDGASGLEQLQQHAPDLVILDLMLPDTDGLE 67

Query: 62  VLRALRVAK---ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           V R +R          V +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++RR
Sbjct: 68  VCRRIRALPGPISKVSVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLRR 127

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   A +++  G L ++ +A+TV V G    LT  ++ ++  ++ R    LT++ 
Sbjct: 128 RSENATESEASTVMRFGTLEIDRNARTVSVAGALADLTSYQFDLLVAMAERAGRVLTRDQ 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  +     E   + IDV + ++R  +   A     I TV G GYV  + 
Sbjct: 188 IMEAVRGRELEAFDRSIDVHMGRIRAAIEVDAKNPKRILTVRGVGYVFAKQ 238


>gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 245

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
 gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
 gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
           [Ochrobactrum intermedium LMG 3301]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   KIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RRS
Sbjct: 66  LCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRS 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   + L   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLVLDRQQHRVYRKEKEVRLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRALDPIRTVRGAGYSF 227


>gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
 gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family
           protein [Stappia aggregata IAM 12614]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD   A  +   L            G  G+++    ++D +I+D  L  + G  
Sbjct: 3   RILVIEDDPEAASYLVKGLSELGHTADQAADGPAGLDMALDRDYDILIVDRMLPKMDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR     TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+ARI A+ RR + 
Sbjct: 63  VIQELRRQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPKS 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +Q  +    GDL+++  A +       I L  +E++++E L       +T+ M L +++
Sbjct: 123 ASQIETTYTVGDLTLDRMAHSCRRGETEIPLQPREFRLLEYLMQNAGQVVTRTMLLENVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +P+  +IDV I +LR K+         + T+ G GY +R+ A
Sbjct: 183 EYHFDPQTNVIDVHISRLRGKIDKGFDTP-LLHTIRGAGYTIRDAA 227


>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
 gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
 gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
 gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
          Length = 239

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + +E ++  V   G   ++  K    D +I+D+ L  + G E 
Sbjct: 14  ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGLEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +   +   PV IL+   +  DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 74  TKRIVADRP-VPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 132

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 133 KVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 193 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSETIRTVHGVGYAFEPPEQ 239


>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 249

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  
Sbjct: 24  RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGLT 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS  
Sbjct: 84  VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGA 143

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + S++V GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 144 ADRRSDSVLVVGDLMLDEDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 204 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 246


>gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 6   MRILIIEDEMKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 66  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 125 YLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 185 INFDTDTNFIDVAVRRLRSKI-DEGYELKLIHTIRGLGYKI 224


>gi|291563400|emb|CBL42216.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SS3/4]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++A+  ++   L  E   V     G + +EL K  +F  +ILD+ +  + G++
Sbjct: 5   KILLVDDERAIRLAVRTALTREGMQVTEAADGSEALELLKKQQFHLVILDVMMEHVGGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+A+R A   TPV +LSG S   D+V GL  GAD Y++KPF+   L+   +A++RRS+ 
Sbjct: 65  VLQAMRAAGDHTPVMMLSGKSDEMDQVLGLGFGADSYLTKPFHTAILIQTAKALIRRSQI 124

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++Q     + I  G  +V+         G  ++ T +E  +   L        TKE    
Sbjct: 125 YSQGAAGDAGIRKGPFTVDTLKMECLKNGEPLNFTAREMTLFRFLMEHPGQVFTKEQLYT 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +   I V++ ++R K+ +      Y++TV G GY+L
Sbjct: 185 QVWN-EAVVDDNTITVYVKRIRNKIEDDPKQPRYLKTVRGIGYML 228


>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 244

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  + + L+            E+ + + +    D +++D  L  + G  +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RALR      + P+ +L+  S   DKV+GL +GADDYI+KPF+ +EL+ARIRA++RR  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  G LSV+  ++    +        I L   E++++  L        ++   
Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ ++      E + +DV I +LR+ LS        +ETV G GY     A+
Sbjct: 187 LDKVWGDHVFIEERTVDVHIKRLREALSPV-QCAEMVETVRGAGYRFTAQAR 237


>gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 220

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++  L    F V     GE  +       F A++LDLGL    G 
Sbjct: 1   MRILLVEDDALLGDGLKAGLSQSGFAVDWLRDGEAAVTALTTERFAAVVLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+    +EDKVRGL  GADDY+ KPF+ +E+ AR+RA++RR+ 
Sbjct: 61  SVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVAARLRALMRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  L+  GD+ ++  A++V  +G  + LTG+E+ ++ +L       LT+ M    LY 
Sbjct: 121 GKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVLTRRMLEEQLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +      ++V +  LR+KL N       I TV G GY+
Sbjct: 181 WDEGVGSNALEVHVHHLRRKLGND-----VIRTVRGVGYM 215


>gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 239

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/235 (31%), Positives = 124/235 (52%), Gaps = 8/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           +IL++ED++++   I + LK   F       GE+ +E  +        +LD+ L  I GF
Sbjct: 3   KILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+       + +L+      DKV GL  GADDY+ KPF+ +EL+ARI A++RR +
Sbjct: 63  EVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRRLQ 122

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G A++ + +G   + LD K        I LT KE+++I+L     +  ++++ 
Sbjct: 123 PFNTQLGGEAENRLCSGIYCICLDKKKFYKGEKEIDLTPKEFEIIKLFLHNVDKAISRDD 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            LN ++      ++KI+DV I ++R+K+ N       +E VWG GY  R   ++E
Sbjct: 183 ILNQIWGRHYIGDLKIVDVNIRRIRQKIENDPSNPATLEKVWGYGYRWRGGVENE 237


>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 367

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++++   I++ L+ E F ++    G + I L K      IILD+ L  I G+
Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   ++   ++  + +L+    I+D+V+GL  GADDY+ KPF+ +EL+ARI A +R S 
Sbjct: 208 EVCSEIKKW-VNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 266

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+  +N  A  +  + + + L+  EY +++ L       L+K   L  ++ 
Sbjct: 267 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 326

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +V I++V+I  LR K+ +     + I TV G GY 
Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN--EHSIIRTVRGVGYK 364


>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 226

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+A+A  + L LK   +   V   G + ++  +      I+LD+ L    G  
Sbjct: 5   KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIG 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV ILS      DKV  L+ GADDYI+KPF   EL+AR+ A++RR   
Sbjct: 65  VLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLRRVGT 124

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S +   G + V L+ ++V  QG  I LT  E++++  L    +   ++E  L  ++ 
Sbjct: 125 QEISALHRFGSVEVELETRSVVRQGEAIKLTHLEFELLAFLVKNPSRVFSREELLRQVWK 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +    ++ +D F+ +LR KL +      +  TV G GY  
Sbjct: 185 -QSSGTLRTVDNFVAQLRSKLESDPENPRFFITVRGSGYRF 224


>gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis
           z3032]
 gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis
           z3032]
          Length = 220

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +G  L +  E+  IILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R + ++TPV IL+   ++ED+V GL +GADDY+ KPF   EL AR RA++RR +
Sbjct: 61  TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+   D+++NL  + V +QG  + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK  I T+ G GY L 
Sbjct: 181 WQDDPSSNTLEVHIHNLRRKL-----GKTRIRTIRGVGYRLE 217


>gi|257069251|ref|YP_003155506.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256560069|gb|ACU85916.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 231

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           R+LL+EDD A+A  +   L  E + V     G D + +       D +ILDLGL D+ G 
Sbjct: 3   RLLLVEDDSAIAEPLSRALDREGYTVTRASRGMDALGIAAGAESIDLVILDLGLPDLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR   +  P+ IL+  +   D V GL +GADDY++KPF   EL ARIRA++RRS+
Sbjct: 63  EVARRLRKGGLECPILILTARADEVDAVVGLDAGADDYVTKPFRLGELQARIRALMRRSQ 122

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +S        +++++ A+     G  + L+ KEY ++ +L     + +T++  +  +
Sbjct: 123 ATEESGDSYDVNGVTLDVSARRAYADGEELSLSAKEYDLLTVLVRESGSVVTRDDLMREV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        K +D+ I  LR+KL + A     I TV G G+     ++
Sbjct: 183 WGAEWWGSTKTLDMHISWLRRKLGDDATDPRRITTVRGVGFRFETGSE 230


>gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 235

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L+ E + V +   G   ++L +  +   IILD  L  I G +V
Sbjct: 5   ILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWMLPSIDGLDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+  S+ +DK+ GL  GADDY++KPF+  ELVAR+R ++RR+   
Sbjct: 65  CRILRAE-CDIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRELVARVRVVLRRASQQ 123

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +  GDL V+ DA    +    + LT KE++++E L+       ++   +  +
Sbjct: 124 KEDDRLPALRLGDLVVDFDAHEARLHNTVVRLTPKEFKLLETLAREPGRAFSRAELVTRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +    E   + IDV +  LRKK+        Y+ TV+G GY LR+  + E
Sbjct: 184 FGIDYEGFDRTIDVHLMNLRKKIEPFPDQPIYLHTVYGVGYKLRKEKEYE 233


>gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
 gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC
           29473]
          Length = 239

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + + L +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYQTQWLVNGAEVVALVRQSPPAIILLDLMLPGSNGISI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 74  CREIRQFS-DVPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++         G+ + LT  E+++++ L+++     T+E  LN+LYD  
Sbjct: 133 RDVPTDRAPLQIDESRFHASYHGNTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL +    K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLRRKLESLDEEKAFIRAVYGIGYRWE 232


>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 234

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E +++     GE+ +E+ K  E   +I+D+ +  + G   
Sbjct: 8   ILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGIRA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    S P+ ILS  +   DK+ GL  GADDY+ KPFN  ELVAR+++ +RR    
Sbjct: 68  TLKIREES-SIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQL 126

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + S+   G LS+N D K V V G  + LT  EY ++ LL   +    +      
Sbjct: 127 GNAAESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 187 SIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIDKN 234


>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LD+ L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A++RR+ 
Sbjct: 64  CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRAG 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   +     G + V++++  V V G  + LT  E++++  L  R     +++  L  +
Sbjct: 124 ARPSERPPESVGPIRVDVESHRVYVDGAEVVLTPLEFKLLTTLMSRLGRVQSRDQLLEDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++   E E + +D  + +LR+KL     G++ +ETV G GY L + ++
Sbjct: 184 WEMSAEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228


>gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
 gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bifidobacterium gallicum DSM 20093]
          Length = 226

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 14/231 (6%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+  LA +I   L +E +   V   G   ++     + D +I+D+ L  + G E  
Sbjct: 2   LVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQASTTLKPDLVIMDVMLPVMDGLEAT 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----- 118
           + +   +   PV +L+      DK+ GL +GADDY++KPF+  ELVAR +A++RR     
Sbjct: 62  KRIVAMRP-VPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERAK 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++  G L ++   + V + G  +HLT  E+ ++  L+ +  + LT+E  L
Sbjct: 121 VIAQNSQNEKILDYGSLVIDPTQRVVTLNGESVHLTPTEFDLLVTLARKPKSVLTREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++D  D    + +D  +  LR KL ++      I TV G GY     A+
Sbjct: 181 EEVWDWVDASGTRTVDSHVKALRHKLGSST-----IRTVHGVGYAFEPPAQ 226


>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
 gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +I++++D+  +   ++  LK ++F V     GE+ +++  K      II D+ +  I GF
Sbjct: 5   KIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPKINGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ +R      P+ +L+      D++ G   G D+YISKPF+ + LVAR+ AI+RRS 
Sbjct: 65  DVVKEIRQ-YSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSN 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G + +++ A  V + G  I L+ KE++++    + +   L++E  LN+++
Sbjct: 124 NLSTGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +     + + ID  + KLR KL        YI+T+WG GY    +
Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG---EYIKTIWGMGYKFEVD 225


>gi|168212632|ref|ZP_02638257.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715801|gb|EDT27983.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 234

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   ILVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN+D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNIDRKEVMLDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
 gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
          Length = 223

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   I+   + E F       G   +E+C+   FD II+D+ + ++ GF 
Sbjct: 3   RLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +R +R    STPV +LS      DK+ G + G DDY+ KPF+ +EL+ R+ AI++RS G
Sbjct: 63  AVREIRKTS-STPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G L+V+   + V + G R+ +T KEY +   L   K   LT+E  +N ++
Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I  LRK L   +G    I T+ G GY   
Sbjct: 182 GYDFYGDDRTLDTHIKLLRKSLGEYSGT---ITTLRGVGYRFE 221


>gi|216538|dbj|BAA03143.1| BasR [Escherichia coli]
          Length = 222

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDTVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
 gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator,
           winged helix family [Rahnella sp. Y9602]
          Length = 224

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD +    ++  L    ++V +   G DG+ L     +DA+ILD+ L  + G+
Sbjct: 1   MRILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  LR  K   PV  L+    ++D++ GL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QVMEVLR-KKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL++++  + V  Q   I LT KE+ +++LL  R+   L++ M  + ++D
Sbjct: 120 AREPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ + +     I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DRSFEVKLIHTVRGIGYV 218


>gi|270291051|ref|ZP_06197274.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304385329|ref|ZP_07367674.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|270280447|gb|EFA26282.1| two-component system, OmpR family, response regulator [Pediococcus
           acidilactici 7_4]
 gi|304328536|gb|EFL95757.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 240

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/241 (31%), Positives = 127/241 (52%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M+IL+IED+K+++  + +  K E + V     G   +E+ K    ++D ++LDL L    
Sbjct: 1   MQILMIEDNKSVSDMMGMFFKKEKWKVTFAYDGVKALEIFKADPQQWDIVLLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   LR    + P+ +L+   S  D+V GL+ GAD+YI+KPF+   L+ARI+A+ RR
Sbjct: 61  GMEVAAELRRTSRTVPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALHRR 120

Query: 119 -----SRGHAQSL-----IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                   +A+       + T  L ++   + V + G  I  LT KE+ +++ L+ +   
Sbjct: 121 VLMNKHNSNAEQQAGKFDVRTAHLKISTATREVYLDGKLISDLTPKEFDLLKTLAQKPMQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++E  L  ++D     + + +D  I KLR+KL     G   ++TVWG GY   ++  D
Sbjct: 181 VFSREQLLQMVWDYEYYGDERTVDAHIKKLRQKLEAV--GPQVVQTVWGVGYKFDDSKID 238

Query: 228 E 228
           E
Sbjct: 239 E 239


>gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 219

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +   L +  F   V   G + ++      FD ++LDLGL D  GF+
Sbjct: 3   RILIVEDEERIASFVRKGLDASGFTTTVVGTGAEAVDYAVTGGFDLMLLDLGLPDTDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R   +  PV IL+    + D V GL+ GADDY++KPF  EEL+AR+R  +R  R 
Sbjct: 63  VLRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARVRLRMRNERP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L+++L  + V V+G  + LT +E+ ++ELL       LT++  L+H++  
Sbjct: 123 TELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSHVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P   ++DVF+  LR+K+     G   I TV G GY L
Sbjct: 183 DYDPGSNVVDVFVRALRRKV-----GAERIVTVRGMGYRL 217


>gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 132/226 (58%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  ++  L+ +++ V +   G+ G ++   Y FD IILD+ L  + G+
Sbjct: 1   MKILIVEDEPKLAGFLKRGLEEQSWEVELAYDGQVGKKMASNYRFDVIILDVNLPLLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + LR   ++TP+  L+ + +I+DK+ G ++G DDY+ KPF   EL+ARI+ + +R+ 
Sbjct: 61  DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  +  ++   DL +NLD K     G+RI LT KE+ ++E L   +   +++      +
Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +D R +    +IDV+I  LRKK+      K  I TV G GY+ +E 
Sbjct: 181 WDIRFDTGTNVIDVYINFLRKKVDKDYPTK-LIHTVVGMGYIFKEE 225


>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
 gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           ceti str. Cudo]
          Length = 255

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 33  RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 92

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 93  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 152

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 153 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 212

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 213 WGPDIYVDDRTVDVHVGRLRKVI-NVGRAADSIRTVRGAGYSF 254


>gi|186475768|ref|YP_001857238.1| osmolarity response regulator [Burkholderia phymatum STM815]
 gi|184192227|gb|ACC70192.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 244

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ +
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETSEVFEFGEFA 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 236

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   +   L+   + V     G   +EL +    D I+LDL +  + G+ +
Sbjct: 4   ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +LS  S   DKV GL+ GADDYI+KPF+  ELVAR+ A +RR +
Sbjct: 64  CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    ++++I+ G L ++ +  ++E+ G + +L  KE++++  L+ +     ++  
Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L   ++     + + +DV I ++R+KL      + YIET  G GY   E 
Sbjct: 184 LLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIET 234


>gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   +ILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    I+D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|157827976|ref|YP_001494218.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932668|ref|YP_001649457.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
 gi|157800457|gb|ABV75710.1| transcriptional activator protein czcR [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907755|gb|ABY72051.1| cell cycle transcriptional regulator [Rickettsia rickettsii str.
           Iowa]
          Length = 237

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 130/223 (58%), Positives = 168/223 (75%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIE +  +A+ IEL L SE        +G +G+ L K   +D +ILDL L DI GF
Sbjct: 1   MRVLLIEGEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVILDLMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++    K+    SGADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTYQKITDFSSGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+     +S+NLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY 
Sbjct: 121 GHAASVFRFDKVSINLDTRSVEVEGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEPE+KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPEMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 224

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++D+  +   I    + E + V     G + +E+ K  +FD I++D+ +  + G+ 
Sbjct: 3   KILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIMMPRLDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             + +       PV +LS      DK+ G + G DDY+ KPF+ +EL+AR+RA++ R++ 
Sbjct: 63  ACKEI-QKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKA 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+ + +I    L +N  A+ V++ G ++ +T KEY ++  L    N  L++E  L  ++
Sbjct: 122 SGNTEDIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + + ID  I  LR  L      +N I T+ G GY   +
Sbjct: 182 GFDFYGDDRTIDTHIKMLRNSLGPY---RNLIVTLRGMGYKFEK 222


>gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 230

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/235 (37%), Positives = 130/235 (55%), Gaps = 5/235 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L+  ++L L    + V     GE+   L +   +DAIILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++TPV IL+   +  +KV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  L + +   +++   + HLYD
Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
              + +   I+VFI ++RKK+         IETV G GY L     +   E   T
Sbjct: 181 QDFDRDSNTIEVFIGRVRKKIGAD-----RIETVRGLGYRLICPEDEMGAETAGT 230


>gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41]
 gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  L  +I  +L+ E  +V   D G D ++      FD +ILD  +  + G 
Sbjct: 1   MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    S  + +L+      D ++GL SGADDY+ KPF  EEL+ARIRA++RR  
Sbjct: 61  EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I   +L +N+D++        I LT  E+ ++E L + K   LT+E    +++ 
Sbjct: 121 KVIEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     +D  +  +RKK+ + +  K++I+ V G GY LR+
Sbjct: 181 YDFDVSNNSLDALVKLVRKKI-DTSHEKSHIQNVRGIGYKLRD 222


>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
 gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
          Length = 228

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LAH +   L++  F V +   G+D     +  + + +ILDL +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+S AA       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFE 224


>gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
 gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758]
          Length = 232

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DDK +  +I++ L  E + V     G++ I++ K  E D +I+D+ +  + G  
Sbjct: 3   KILVCDDDKDIVEAIDIYLTQEGYEVLKAYDGDEAIKVLKRNEVDLLIMDVMMPRLDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R   +S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 63  ATLKIRE-NMSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQ 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R   QS   TG L +  D K V V G ++ LT  EY ++ LL   +    +    
Sbjct: 122 LGSTARSDNQSEFRTGGLVIRDDLKEVTVDGEKVKLTPIEYNILLLLVKNQGKVFSINQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 182 YENIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEK 230


>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 260

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR    +   P+ +L+ ++  +DKV G  SGADDY++KPF  EEL+AR++A++
Sbjct: 61  GLTLCQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALL 120

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RRS           ++  G +++  +          + LT  E++++  L  R   T+  
Sbjct: 121 RRSDRAPLSSKHSEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + L  ++    + +++ I V I  LR KL        +I+TV+G GY L 
Sbjct: 181 SLILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 222

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD +++  +   L+ E + V VT  G + ++  +  + D ++LDLGL ++ G EV
Sbjct: 4   VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 64  ARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGGAE 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                V   + ++ D++   +    + LT KE+ ++ +L       +T+E  +  ++D  
Sbjct: 124 VP---VVHGVRIDNDSRRAWLGERELQLTTKEFDLLRVLVRDAGKVVTREQIMREVWDTN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                K +D+ I  LR+KL + A   +YI TV G G+    +
Sbjct: 181 WWGSTKTLDMHISWLRRKLGDDANQPSYITTVRGVGFRFERD 222


>gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
 gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2]
          Length = 226

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 129/221 (58%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+      ++  L  E +   + D G DG+      ++D IILD+ L  + G++
Sbjct: 3   RILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ ALR +    PV  L+   ++ DKV+GL+ GADDY+ KPF+  ELVAR+R ++RR+R 
Sbjct: 63  IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++    D++V++  +TV   G +IHLTGKEY ++ELL  R    L + +  + +++ 
Sbjct: 123 QTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNI 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +  +IDV + +LR K+ +       I TV G GY+L 
Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDD-YEPKLIHTVRGAGYILE 222


>gi|170758675|ref|YP_001786359.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405664|gb|ACA54075.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 240

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D IILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     + +G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENANEEKNILSFGPFELNISKGEFKKEGSLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235


>gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10]
 gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family
           [Maricaulis maris MCS10]
          Length = 223

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+  A  I   L+           GE+G+E+ +  E+D +++D  +  + G 
Sbjct: 1   MRILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ ALR     TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+ RR  
Sbjct: 61  SMVEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRD 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +V GDL ++L A+TV  +G  I L  +E++++E L       +T+ M L  ++
Sbjct: 121 PDTVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+ +    ++ + TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKPFPRSLLHTVRGAGYRLQ 222


>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 240

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 117/234 (50%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL IED+ A+   +   L+ E +NV   + G   ++      FD IILD+GL D+ GFE
Sbjct: 6   QILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPDLNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+  L+      D+V GL+ GADDY +KPF+  E+VARI+AI RR   
Sbjct: 66  VCKQLRQ-KSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124

Query: 122 HAQSLIVTGDLS------------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             QS      +S             N  +  ++  G  + LT  EY+++ LL        
Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++  ++H+++  +    + +D  I  LR+KL       + I T  G GY L +
Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSLVK 238


>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
 gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
          Length = 260

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 258

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  S+   L+ E + V     G       +  ++D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR  + +TPV I +   ++  ++ GL +GADDY+ KP++ +EL ARIRA++RR+ 
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +   G +S+N       + G  + L+ +E+ ++E L  R    L++      LY 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDETC 230
            +DE     ++V++  LRKKL     G + I  + G GY++ +E A     
Sbjct: 181 WKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMIAKEPAPASPS 226


>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 227

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|54308194|ref|YP_129214.1| putative transcriptionalregulator [Photobacterium profundum SS9]
 gi|46912622|emb|CAG19412.1| Putative transcriptionalregulator [Photobacterium profundum SS9]
          Length = 225

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++L L   +F     + G DG+      E+D I+LD+ L D+ G+
Sbjct: 1   MKILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  ++    + P+ +L+   S+ED+V+GLQ GADDY+ KPF   EL+ARI+  VR++ 
Sbjct: 61  KILTQIKTHYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++ +  GDL V+L  + V      I LT KE+ ++ELL  R+   L+K    + ++
Sbjct: 121 NVAAKTTLTIGDLHVDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +I+V I +LRKK+ +       I T+ G GYV+ 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKV-DDPFEFKLIHTLRGMGYVME 222


>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
 gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
 gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
           [Acidiphilium cryptum JF-5]
 gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acidiphilium multivorum AIU301]
          Length = 236

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L+   F V     G + +        D ++LD  L  + G EV
Sbjct: 9   VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEV 68

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R LR    +   PV +L+  +  +D VRGL++GADDYI+KPF+ E L+ARIRA++RRS 
Sbjct: 69  CRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRSG 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++ +V  DL ++     V   G  +HL   E++++E          ++E  LN ++
Sbjct: 129 TAPARAPLVFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E + +DV I +LRK + NA    + + TV   GY L  +A
Sbjct: 189 GRDIHVEPRTVDVHIRRLRKSI-NAETDIDLVRTVRAAGYALDLDA 233


>gi|312172890|emb|CBX81146.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
           BAA-2158]
          Length = 235

 Score =  259 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N+  +    G++ ++  K +  D ++LDL L  + G  V
Sbjct: 10  ILIVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPAMDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++      D++ GL+ GADDYI KPF+  E+VAR++ I++R R  
Sbjct: 70  CRELRRFS-ELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCRRV 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +    L ++            + LT  E+++++ L+ +     ++E  LNHLYD  
Sbjct: 129 TEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL +    + +I  V+G GY    + 
Sbjct: 189 RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEADG 231


>gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08]
 gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07]
 gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08]
 gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07]
          Length = 244

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 135

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 243


>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E +   V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K STP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREVK-STPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIHL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   Q+ +   DL++  + + V      I+LT +EY+++  L    N  L +++ L
Sbjct: 122 EGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV++  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 TKVWGYESEVETNVVDVYVRYLRNKI-DVPGQKSYIQTVRGTGYVMR 227


>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILLI+DD  L   +   LKSE F V     GE G++      +  ++LD+ L  I G
Sbjct: 1   MKQILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGISG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +VLR LR      PV +L+      D++ GL+ GADDY+ KPFN  EL+ARI+AI+RR 
Sbjct: 61  LDVLRRLRPQS-RIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRV 119

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +G      ++  GD++++  A+TV+  G ++  T  E+ ++  L       + +E     
Sbjct: 120 QGGQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +   R  P  + ID+ I K+R+KL + +     I+TV G GY+
Sbjct: 180 VLGRRFSPFDRSIDMHISKIRRKLLDESD--ELIKTVRGTGYI 220


>gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14]
 gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14]
          Length = 219

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEQSGWVAELSCDGIDALYRATSEPWDAIVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +RRS 
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  +G  I LT  E++++  L    +  +++   + H+Y 
Sbjct: 121 GNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++R+K+ N       I+TV G GY +  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRINAN 219


>gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
 gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
          Length = 243

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V     G   +E+      D ++LDL L    G +V
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A +  P+ +L+      DKV GL+ GADDY++KPF+  E++AR++A +RR +  
Sbjct: 65  CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKP 124

Query: 123 AQSLIVTGD------------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             S   TG             L ++ D   V   G  + LT +EY+++  L+      +T
Sbjct: 125 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+        YI T  G GY++R
Sbjct: 185 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 236


>gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 247

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E + V     G   +E+      D ++LDL L    G +V
Sbjct: 9   ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A +  P+ +L+      DKV GL+ GADDY++KPF+  E++AR++A +RR +  
Sbjct: 69  CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKP 128

Query: 123 AQSLIVTGD------------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             S   TG             L ++ D   V   G  + LT +EY+++  L+      +T
Sbjct: 129 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 188

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+        YI T  G GY++R
Sbjct: 189 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 240


>gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 227

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
 gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis AMD]
          Length = 250

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + ++ +   V   G   +   +  + D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPIMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R + ++K+  P+ +L+   +  DK+ GL +GADDY++KPF+  EL+AR  A++RR    
Sbjct: 74  TRRI-ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVERA 132

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +Q          I  G L +    + V +    +H T  E+ ++  L+   +T   +E  
Sbjct: 133 SQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREEL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  I  LR K+     G  +I TV G GY       D
Sbjct: 193 LEEVWDWPDASGTRTVDSHIKSLRHKI-----GSEWIRTVHGIGYAFEPPISD 240


>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I    + E +++     G + I+ C+  +FD II+D+ + D  GF 
Sbjct: 3   KILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K   PV +LS   +  DK+ G + G DDY++KPF+  EL+ARI+ I+  SR 
Sbjct: 63  ACKKIKEFK-DIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRN 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      +    + ++    TV V G +  LT KEY ++ LL   K   L+++  LN 
Sbjct: 122 AEQKSDSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + +D  I  LR KL +    ++ I+TV G GY   
Sbjct: 182 VWGYDSFGVDRTVDWQIKLLRSKLGDY---RDSIKTVRGVGYKFE 223


>gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+ ++A +IE+ LKS+ +       G    E+ +    D  I+D+ +  + G  +
Sbjct: 5   ILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVMMPVMDGIAL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+ ILS  S   DK+ GL  GADDY++KPF   EL+AR+ A +RR    
Sbjct: 65  TMKIRET-YDFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHMRY 123

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +  ++ G + ++  +K V V G    LT  E+++++L         + + 
Sbjct: 124 RQLLEQKQEVEDSLLLGGIELHRKSKEVFVDGEPRRLTPIEFRILQLFMEHPGQVFSSDD 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              H++        + + V I  LR+K+        YI+ VWG GY + + 
Sbjct: 184 IYEHVWK-EAAVNTETVMVHIRNLREKIEINPRTPRYIKVVWGVGYKIEKQ 233


>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD         +L+   + V     G   ++  + Y  D I+LD+ +    GF
Sbjct: 1   MYILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+  LS  S ++D+V GLQ G DDY+ KPF   EL+AR+ A++RR  
Sbjct: 61  DVCRQIRRTS-DVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + +  GD++++     V    G  + LT  E++++  L       L     LN
Sbjct: 120 SDMLNPSARLSHGDITLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNSGRVLNTSQILN 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++ V+I +LR K+        ++ TV   GY   
Sbjct: 180 KVWGYDCEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225


>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  I   L++ +F       G   I L +    D +ILDL L    G +
Sbjct: 5   RILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLPGRDGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +++      D++ GL++GADDY+ KPF+  ELVAR++A++RRS  
Sbjct: 65  ICRELRGFS-RVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAVLRRSGK 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                     L  +  +      G  + LT  E+++++ L  R    LT+E  +NHLY+ 
Sbjct: 124 PPP----LPGLLTDPASYRAYCNGIPLDLTPVEFRLLDALLARPGQALTREQLMNHLYED 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  +  LR+KL  AA G++ I +++G GY L 
Sbjct: 180 HRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLE 220


>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 224

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+  +   +    + E + V   + G + + LC   ++D II+D+ +  + G+ 
Sbjct: 3   HILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPRLDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +  +K + PV +LS      DK+ G + G DDY+ KPF+ +EL+AR++ +++RS  
Sbjct: 63  ACKEIHKSK-NIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSAR 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                     V   L V++  + V V G +  +T KEY ++  L   KN  LT++  L  
Sbjct: 122 QESDAQLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LR  L      + +I T+ G GY   
Sbjct: 182 VWGYDFFGDDRTVDTHIKMLRNSLGEY---RKFIVTLRGMGYKFE 223


>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
 gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
           coli M718]
          Length = 260

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLITTIRGMGYSFV 256


>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
 gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
          Length = 222

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 134/223 (60%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  SI   L+   + V + + G++  E+C   ++D +ILD+ L  + GF
Sbjct: 1   MKLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R    +  + +L+  S +ED+V GL  GA+DY+ KPF+ EEL ARIR+++RR  
Sbjct: 61  SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++IV G +  + +++TV++      LT KE  ++E L L K+  +++E  L+H++ 
Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     + V +  LR+KL + AG  N I+ V G GY++ E
Sbjct: 181 DSVDFLSNTVRVHMSTLRRKLKDKAGC-NIIKNVIGEGYIIDE 222


>gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 223

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  ++E  L++  F V     GEDG  L     +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDEPQLTLALERALEAAGFAVDTAYDGEDGWHLGDTESYDAVILDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A  + PV +L+  +   +K +   +GADDY++KPF  EE+V R+RA++RR+ 
Sbjct: 61  SVLGRWREAGRAMPVMVLTARARWAEKSQAFNAGADDYVTKPFEMEEVVTRVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   I  G L ++     V   G  I LT +E++++  L+  +   +++   + H+YD
Sbjct: 121 GHASPEITCGPLRIDTVGGRVSRAGLPIALTAQEFRILSYLAHHQGRVVSRSELVEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P+  ++DV + ++R+KL         I T+ G+G+ + 
Sbjct: 181 RDADPDSNVLDVLVARIRRKLGVD-----VIHTLRGQGWRME 217


>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  G DDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
 gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
           [Jonesia denitrificans DSM 20603]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL EDD A++  +   L  E +NV V   G+  I+       D ++LDLGL D+ G E
Sbjct: 3   HVLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHAGAA--DLVVLDLGLPDMDGLE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   D+ V++ A      G  +HLT KE++++ +L  +  + + +++ +  ++
Sbjct: 121 DPTESEEITAQDVKVDVAAHRAFQDGRELHLTTKEFELLRVLVSQAGSVVGRDILMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   K +D+ +  LR+KL++ A    YI TV G G+    +
Sbjct: 181 GSEPIGSTKTLDMHVSWLRRKLNDDANNPRYITTVRGLGFRFEAS 225


>gi|227893254|ref|ZP_04011059.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864937|gb|EEJ72358.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 240

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDTSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPLALIARIKALHRRI 123

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168
                    +       I T  L ++ + + V      +  LT KE+ ++  ++ +    
Sbjct: 124 MMKEEIAPKTEAKQDYDIETNHLKISKNRREVMFDDQPVTDLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--QVIQTVWGVGYKFDDS 237


>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 118/228 (51%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ +D+  +   +    K E+    +   GE+ I + + Y    ++LD+ +    G+E
Sbjct: 3   HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K   PV +++      +K+ GL  GADDYI KPF+  E++ARIRAI+RR   
Sbjct: 63  VCRKIRA-KSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   +++++   +L +NL+  T+ + G +I LT KE + +  L+   N   T++  L+
Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L+      + + +D  I +LR KL         I+T+WG GY    +
Sbjct: 182 SLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229


>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
 gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
 gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F+V     G +G ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + LR++    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
 gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
           Bath]
          Length = 232

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L++ED++A+   + L+L+  +F V      +  +      E D I+LD  L  + G 
Sbjct: 4   INVLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGV 63

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E  R L+  +     P+ +++     EDK+RGL  GADDY++KPF+  EL+ARIRA++RR
Sbjct: 64  EWARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRR 123

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           S   +     I  G + ++ D   + +    ++L+  EY+++E      +   ++   L+
Sbjct: 124 SNRQSKLDGRIEIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E + +DV I +LRK LS      + I+TV G GY  
Sbjct: 184 QVWGRSAYIEERTVDVHIRRLRKILSEHDRE-DMIQTVRGFGYRF 227


>gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 219

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L++  +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIIETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+AR+RA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
 gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
           BKT015925]
          Length = 247

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 125/236 (52%), Gaps = 17/236 (7%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED++ +   +   L +E +++     GE+GI++ +    D IILDL L  I 
Sbjct: 13  MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLPGIS 72

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++V R +       P+ +L+  + I DKV GL+ GADDYI+KPF+  E++ARI+  +RR
Sbjct: 73  GYDVCREI-NPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRR 131

Query: 119 SRGHAQSLIVTGD-------------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
            +   +      +             + + +D++ +      I+L  KEY ++  L+  K
Sbjct: 132 IKELDKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNK 191

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N   ++E  L+ ++      + + +DV + ++RKKL       + I+TV+G GY +
Sbjct: 192 NIVFSREQLLDDIWGYDFLGDSRTVDVHVQRIRKKLGVTGKN-SIIKTVFGVGYKM 246


>gi|319403893|emb|CBI77479.1| two-component response regulator [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G    +   +D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHTADIAYDGDTGYTFAETVNYDVMVIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY++KPF   EL+AR+  + RR  
Sbjct: 61  SIVTELRAKGIETPVLILSALGQVDDRVTGLRAGGDDYLTKPFAFSELLARVEVLRRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGDKNIILQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226


>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMYGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 227

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 70  CRELRSFS-AVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 STDPHTPKGLQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 230

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I + L+  +++        +   L      D ++LD  L    G E+
Sbjct: 6   VLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWMLPGTSGVEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +     P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S I    L+++     V  Q   + +   EY++++     +    T+   L+ ++
Sbjct: 126 PPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVYTRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    E + +DV I +LRK L +       I+TV G GY     A
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDQYDH--LIQTVRGTGYRFSTRA 229


>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
           18811]
          Length = 229

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ I       +   ++LD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKIVRKDS-RIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      +  G L +N D+  V    G  ++LT  E+ +  LL+   N   + +  
Sbjct: 120 ENSVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G   I+TVWG GY +  N
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229


>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
 gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
           regulator OmpR [Pediococcus acidilactici 7_4]
          Length = 229

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD--AIILDLGLTDIP 58
           M+IL+++DDK +   +++ +K+E +       G++ +      + D   +ILD+ + ++ 
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHT-DPDIKLMILDIMMPEMD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V+R +R      P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RR
Sbjct: 60  GMQVVREVRKDS-ELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118

Query: 119 SRGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       A  ++  G L++N D+  V  + G  + LT  E+ ++ LL+   N   + + 
Sbjct: 119 SEKDVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADE 178

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               ++        K + V +  LR K+  A GG+  IETVWG GY 
Sbjct: 179 IFERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A  IE  LK+E   +   + G+  +E    YE D +ILD  L    G 
Sbjct: 1   MRILLIEDDPRIASFIERGLKAEGHQIQHLNDGQYAVETVISYEPDLLILDRMLPHCDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + +R A I   + +LS +  ++++V+GL++GADDY++KPF+ EEL+AR+ A+ RR  
Sbjct: 61  TICQQIRSAGIDVRILMLSALGDVDERVKGLRTGADDYLAKPFHFEELLARLDALQRRHS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   DL + L    V      I LT KE  ++ELL  +     ++E  L +++
Sbjct: 121 ESSPLPTLQVADLVLCLPTMQVTRDNQLIELTAKELSILELLMNKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P   ++DV++ +LRKK+ +       ++T  G GY L+ +
Sbjct: 181 GMHQDPLTNVVDVYMRRLRKKI-DDPFTAPLLKTKRGMGYYLQAD 224


>gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1]
          Length = 232

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L    ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALACEGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +    +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEPQAS 232


>gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630]
 gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile]
          Length = 244

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE      +    +LD+ L DI G 
Sbjct: 16  KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 76  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 135

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 136 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 196 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 243


>gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD++ A  +   LK E  +      G  G+EL    ++DA+++D  L  + G 
Sbjct: 1   MKVLVIEDDRSTADYVTGGLKEEGHDPDHAASGPIGLELACTRDYDAMVIDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++RALR +   TPV  L+ +S ++D+V GL++GADDY+ KPF   EL+AR+ A+ RRS 
Sbjct: 61  SIVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRSP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL +NL A+TV  +G  + L  +E++++E +   +   LT+ M L  ++
Sbjct: 121 MRREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P   +++  + +LR K+ +       I+T+ G GYVL   A
Sbjct: 181 DFHFDPRTNVVETHVSRLRGKV-DRPFSTEMIKTIRGSGYVLNVPA 225


>gi|77459613|ref|YP_349120.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383616|gb|ABA75129.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 235

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ LA  I   L+   + V     G+  +     ++   ++LDL L    G  
Sbjct: 8   RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR   
Sbjct: 68  VCREIRSVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVP 126

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   S +  G+L ++   + V + G  I LT  E++++ LL+      L+++  LN + 
Sbjct: 127 DSGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   + +DV+I KLR KL +       I+TVWG+GY+    A +
Sbjct: 187 GIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFAWE 234


>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++  L   ++ V     GED +E       + ++LD+ +  + G E
Sbjct: 5   KILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGMGGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             RA+R +    PV ILS  ++ +DKV  L +GADDY++KPF  EEL+ARIRA +RRS  
Sbjct: 65  TCRAIR-SGTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRRSPS 123

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                       +L ++ DA+ V   G  + LT KE++M+  L       +T    L  +
Sbjct: 124 GPDGGPHGFTASNLEIDFDARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + + VFI +LRKK+        +I T    GY  
Sbjct: 184 WGPDYGDEPEYLRVFINQLRKKIEANPSKPKFILTEPWVGYRF 226


>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 245

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++A  I   LK   ++ +V        +  +      ++LD  L D  G  +
Sbjct: 24  ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 83

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  +      V +L+  S  EDK+ GL +GADDYI+KPF+  EL ARI+A++RR S
Sbjct: 84  LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 143

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HAQ ++  G ++++  + +V + G RI +   EY++++      +   ++   L+ ++
Sbjct: 144 PEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L +A   +  I+TV   GY+L
Sbjct: 204 GDHVVIEERTVDVHVLRLRKALRDA---EYLIKTVRSVGYML 242


>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 231

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 7/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +++++D+ A+  S+   L+ E + V V   G  G+ L +    D ++LD+ +  + G 
Sbjct: 1   MHLVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + PV +L+  + + D+V GL +GADDY+ KPF  +EL+AR+RA++RR+ 
Sbjct: 61  EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        + +   D++++   + V      +HLT  E+ M+E         LT+ + 
Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +++          +DV++  LR+KL    G    + TV G GYVLRE  
Sbjct: 181 FENVWGYDFGTASNGLDVYVSYLRRKLEAD-GEPRLLHTVRGVGYVLREEP 230


>gi|297588265|ref|ZP_06946908.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573638|gb|EFH92359.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 222

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 6/218 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDDK++   I   L +E +         +          D IILD+ L    G ++L+ 
Sbjct: 5   VEDDKSIRELIIYALNNEGYEAMGFGDYNEFKSTLYSSSIDLIILDIMLPGKSGLDILKE 64

Query: 66  LR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GH 122
           +R      S PV +L+  ++  DK+ GL SGADDY+ KPF+  EL+AR+RA++RRS    
Sbjct: 65  IRNNEKTKSIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSSLSK 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I+  ++ ++ D +TV V G  + LT KE++++  L       LT+E  +  ++   
Sbjct: 125 TKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIWGFD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E E + +DV I  LR+KL NA+     I+T+   GY 
Sbjct: 185 FEGESRTVDVHIATLRQKLKNASS---IIKTIRNLGYK 219


>gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 220

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEAKA 220


>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
 gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
          Length = 231

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +D++ +  ++EL LK+E ++++    G++ +E+        I++D+ + ++ G 
Sbjct: 1   MNILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIMMPEMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
                +R    + P+  LS  +   DK+ GL  G DDYI+KPFN  E++AR+++ +RR  
Sbjct: 61  HATLKIRET-ANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRRYT 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      +  TG L ++   K V V G  + LT  EY++++ L        + E   
Sbjct: 120 TLGSYVKRTDVYKTGGLELDDAYKKVTVDGEEVKLTPVEYKILKFLMREMGKVFSIEQIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++++         + V + ++R+K+        Y++ VWG GY + +
Sbjct: 180 ENVWEEPSYNADNTVAVHVRRIREKIEINPKEPKYLKVVWGIGYKVEK 227


>gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 227

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 70  CRELRSFS-AVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +     +  L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 STDPHTSKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 257

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++    ++ D ++LD+ L    G E
Sbjct: 32  RVLVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVMLPGFDGLE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 92  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 150

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 151 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 210

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 211 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 257


>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
 gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
           2380]
          Length = 230

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +   +   L  E F V +   GE+G+E       D ++LDL L  + G +
Sbjct: 5   HILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLMLPGMDGLQ 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V RAL+    +    V +++      D V GL+ GADDY++KPF+ + L+ARIR+++RR 
Sbjct: 65  VCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLRRR 124

Query: 120 RGHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++     ++   DL ++     V V+G  + LT  E++++  L+ R     T+   
Sbjct: 125 ESADETGADQVVVHIDDLVIHPGRNQVTVKGVPVDLTFTEFRVLHFLASRPGWVFTRYQI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +N +         + +DV I  LRKKL        YIETV G GY  +
Sbjct: 185 VNAVRGDDYSVTDRAVDVQIVGLRKKLGAYG---KYIETVRGVGYRFK 229


>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 241

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 2/234 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +  ++   L  + F V       +G+ + +    D I+LD+ L    G  V
Sbjct: 8   ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            + +R       + +++   + EDKVRG ++GADDY++KPF  +ELVARI A ++RS  G
Sbjct: 68  CQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSDAG 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H   ++  GDLS++      +V G  + L  KE++++  L+       ++E     ++  
Sbjct: 128 HRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVWGH 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
                 + IDV I ++R  L   +   +YI T  G GY      + E       
Sbjct: 188 AGVGSSRTIDVHIRRIRAALEKKSAY-DYIHTARGLGYRFEPVPRRERVATPPP 240


>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
 gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ +       E   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-EIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ +L+   N   + +  
Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 222

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +K   +       GE    L     +DA+ILD+GL+ + G 
Sbjct: 1   MRILIVEDDRDLNHQLAKAIKDAGYVFDSAFNGEYAYFLGSTESYDAVILDIGLSGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++  R    S PV +L+      DKVRG+ +GADDY+ KPF+ EE++AR+RA++RRS 
Sbjct: 61  QVVKKWRKEGYSMPVLMLTVCDRWSDKVRGIDAGADDYVVKPFHLEEVMARLRALIRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G++ ++     V + G  I LT  E++++  L    +  ++K   + HLYD
Sbjct: 121 GHATNTLSCGEVLLDTKTSRVFIDGQLIKLTSYEFRLLSYLMHHSDKVVSKTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I+VF+ +LRKKL   +     IETV G GY ++
Sbjct: 181 QDFDKDSNTIEVFVRRLRKKLGVDS-----IETVRGLGYRIK 217


>gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
 gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC
           35236]
          Length = 220

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 129/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   + + L SE +             L +  ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  +++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL ++ V +QG  I +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GLSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+     ++V I  LR+KL     GK+ I T+ G GY L 
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRLE 217


>gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
 gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri
           MJ11]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L+ E F    T+ G++G+ +    ++  IILD  L ++ G 
Sbjct: 1   MKILVIEDDQTTRDFVTKALEQEGFITDSTEDGKEGLMMAISCDYQLIILDRMLPNLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRNR 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A + +   +L++NL ++ V +  + + L  KE+ ++  L+   +  +++       
Sbjct: 121 PIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P+  +IDV I KLRKKL + +G  + IETV G GYVLR
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKL-DNSGAVDLIETVRGAGYVLR 223


>gi|322805284|emb|CBZ02848.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 240

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D +ILD+ L D  G+
Sbjct: 10  KILVIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     +  G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKKDGELIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235


>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 230

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L++DD++L   +  +++   +       GE+G+ L    + D ++LD+ +  + GF+V 
Sbjct: 1   MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R +R      P+  LS    I DK  G ++G DDY+ KPF+ +EL+ RI A +RR +   
Sbjct: 61  RRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDDL 120

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +    TGDL V  +     + G ++ LT KE++++ LL+       T++   
Sbjct: 121 AFAKAVNREGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQIF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++    E +   I VF+ K+R+K+        Y+ TVW  GY   E
Sbjct: 181 AHIWGEDSEVDESSITVFMRKIREKIEENPSQPKYLLTVWRVGYKFAE 228


>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
 gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
           20213]
          Length = 240

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++     + D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  +  LR KL         I TV G GY      +
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKLGAD-----MIRTVHGVGYAFEPPTE 240


>gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT]
 gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT]
          Length = 227

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 127/229 (55%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+++L + +++ L  EN+ V   + G+  IEL +    D ++LDL L DI GF
Sbjct: 1   MKILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+ A++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     S+I  G + +  D + V +    +  T  E++M+ L+        T+E 
Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++        + +D+ I ++RKKL      ++ I+T++G GY   
Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKLLE---HEDAIKTIYGVGYRFE 226


>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ + + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
 gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium IMCC1989]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   + + L+  +++       +    L    +   I+LD  L    G ++
Sbjct: 7   ILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGIDL 66

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +     P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 67  ARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTE 126

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A  LI    L ++     V +    + +   EY+++      ++   T+   L+H++
Sbjct: 127 GISAAELIEVEGLRMDPVGHVVTINNEPLQMGPTEYRLLAFFLTHQDRVYTRGQLLDHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L        +I+TV G GY  
Sbjct: 187 GGNVYVEERTVDVHIRRLRKAL---TSHDRFIQTVRGAGYRF 225


>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 229

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++   +   L+   +N    +   +  E  +      I+LD  L D  G  +
Sbjct: 8   ILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLRL 67

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  +   + PV +L+  +  EDK+ GL +GADDY++KPF+  EL ARI+A++RR S
Sbjct: 68  LSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRKS 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HAQS++  G ++++  + +V +   +I +   E+++++      +   ++   L+ ++
Sbjct: 128 PEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E + +DV + +LRK L  A   ++ I TV   GY+L E
Sbjct: 188 GDHAVIEERTVDVHVLRLRKALKEA---EHLIRTVRSVGYMLSE 228


>gi|330817288|ref|YP_004360993.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
 gi|327369681|gb|AEA61037.1| hypothetical protein bgla_1g24100 [Burkholderia gladioli BSR3]
          Length = 244

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ S
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGEFS 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. CB0205]
          Length = 253

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   +E  L      V + + G   +E  +  E D ++LD+ + ++ GF 
Sbjct: 11  KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   +R      P+ +L+ +  + D++ GLQ GADDY+ KPF+ +EL ARIR ++RR   
Sbjct: 71  VTERIRAQS-EVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSS 129

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G    ++V GDLS++ + +       RI LTG E+ ++ELL  R    +++
Sbjct: 130 VQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISR 189

Query: 172 EMFLNHLYDGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              L  ++  + E   + +++DV I +LR KL +       I T  G GY+ +
Sbjct: 190 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMFQ 242


>gi|238026960|ref|YP_002911191.1| osmolarity response regulator [Burkholderia glumae BGR1]
 gi|237876154|gb|ACR28487.1| Hypothetical protein bglu_1g13360 [Burkholderia glumae BGR1]
          Length = 244

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ S
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGEFS 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
           BAA-613]
          Length = 238

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDDK +   +E+ LKS+ + V+    G +G+++ +  E D  I+D+ +  + G  
Sbjct: 7   RILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVMMPRMDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   LR  K   PV  LS  S   DK+ GL  GADDYI+KPF   EL+AR+ + +RR   
Sbjct: 67  MTAKLRE-KYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYHR 125

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +     +   G L VN +   V V    + +T  E++++ LL          
Sbjct: 126 FLDRLNSKQTENPKVHRLGGLEVNEETVEVTVDDKTVKVTPIEFKILLLLIQNPGRVFPA 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E     +++ R       + V I  LR+K+        Y++ VWG GY + +  
Sbjct: 186 EEIYERVWNER-AVNTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEKQP 238


>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A+ ++  L+   F     D G D +   + +  D I+LD+ L    G +V
Sbjct: 6   ILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIMLPGKDGLQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+      D++ GL+ GADDYI KPF+  ELVAR++A++RRS   
Sbjct: 66  CKEVRTIS-QVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRSSLR 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++   T D  ++ +   V  QG  ++L+  E+ +++LLS       ++   +  +Y   
Sbjct: 125 QENH-STEDWHMDEERYQVRYQGKTVNLSMVEFAILKLLSTSPGRIYSRSHLIGSIYPDN 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I KLR KL+     K  I +V+G GY   
Sbjct: 184 RVVSDRTVDSHIKKLRHKLAEELTSKELIYSVYGVGYKFE 223


>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
 gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 7805]
          Length = 265

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 118/233 (50%), Gaps = 11/233 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120

Query: 117 RRS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS        G+   ++  G L++  +          + LT  E++++  L  R   T+
Sbjct: 121 RRSDRAPVGSSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTV 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 APSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233


>gi|148548790|ref|YP_001268892.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|148512848|gb|ABQ79708.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR +
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +       I TV G GYVL E A+
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHPNKLIHTVRGMGYVLEERAE 226


>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
 gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
           19254]
          Length = 229

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E +     + G  G++L    ++D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRITI 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFNSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 233

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++++   I L L   NF        E      K  E D I+LD  L  + G + 
Sbjct: 6   ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGIDF 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ +R    +   PV +L+  +   +K+ G   GADDY++KPF+++EL+ARI+AI+RR +
Sbjct: 66  LKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKK 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G+L V+ D+  V  Q   I L   E++++ LL + KN  L++E+ ++ ++
Sbjct: 126 PDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   E + + IDV + +LR  L +  G +N IET+ G GY L + 
Sbjct: 186 NNESEIDARTIDVHVKRLRSTLKSH-GIENSIETIRGAGYKLSDE 229


>gi|325277325|ref|ZP_08142950.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097515|gb|EGB95736.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 226

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLRQGLNEAGFATELASDGETGQFLALSGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A   TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGRDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q + +   DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGSRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHPNKLIHTVRGMGYVLEERP 225


>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 236

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + LK + FNV   + G + + + +    +A ILD+ +  + GFE+
Sbjct: 11  VLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVMMPGMDGFEL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L  LR   +  PV  L+   S++ ++ GL  GADDY++KPF+ EE++ R+R I+RR    
Sbjct: 71  LAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGAG 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ + +   DL++N D   V   G  I L+  E+ ++  L   K   L+K   L+++
Sbjct: 131 QDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDNV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  +++ +I  LR+K+    G    I TV G GYVLR
Sbjct: 191 WHYDFGGDGNVVESYISYLRRKI--DTGDSPLIHTVRGVGYVLR 232


>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD A+A  +   L  E + V     G   ++       D +ILDLGL D+ G +
Sbjct: 3   KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL SGADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 120

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   D+ V + A         + LT KE+ ++ +L     + +++E  +  ++
Sbjct: 121 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   K +D+ +  LR+KL + A    YI TV G G+   
Sbjct: 181 GSDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 223


>gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 221

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ L   I   L    F V     G           + A +LDLGL    G 
Sbjct: 1   MRILLAEDDELLGSGIRAGLGQNGFQVDWVRDGVAAERELATGAYQAAVLDLGLPRQDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  + +TPV +L+   ++  ++ GL +GADDY+ KP +  EL AR+RA+VRR+ 
Sbjct: 61  DVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +++ +  G++ ++  A  V V G  + L+ +EY ++  L L     L++E     LY+
Sbjct: 121 GQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQRLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E     ++V I  LR+KL     G   IETV G GY +  +A
Sbjct: 181 WGSEINSNAVEVHIYHLRRKL-----GTPLIETVRGVGYRIARDA 220


>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Leuconostoc mesenteroides subsp. mesenteroides ATCC
           8293]
          Length = 229

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 127/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ LA  + L LK E +     + G  G++L    ++D I+LDL L ++ G E
Sbjct: 3   KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+ARIR+++RR   
Sbjct: 63  VARRLREVK-KTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIAI 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S+I   DL +  + +        I+LT +EY ++  L    N   ++E  L
Sbjct: 122 ETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +     +YI+TV G GYV+R
Sbjct: 182 KEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMR 228


>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F+V     G +G ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + LR++    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGIGYKLEET 224


>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
 gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
          Length = 249

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  LA  +   L+ + + V   + G   +   +    DA++LD+ L D  G  
Sbjct: 23  RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLT 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR L   +    V +L+   ++ED++ G+ +G DDY++KPF+ EE++AR+R ++RR+  
Sbjct: 83  VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGM 142

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      +  GDL ++ DA+ V   G  I L+  EY+++  L       L+K   L+ 
Sbjct: 143 ARQPADGPRLTVGDLVMDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDR 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         +++++I  LRKK+   AG +  I TV G GYVL+ 
Sbjct: 203 VWSYDFGGRAHVVELYISYLRKKV--DAGREPMIHTVRGAGYVLKP 246


>gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
 gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  LA +I   L +E F   V   G+DG       EFD I+LD+ L    G++
Sbjct: 3   RVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFATACSDEFDVIVLDIMLPGKHGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR  +I TP+ +LS      D       GADDY+ KPF+   L+AR+RA+VRR   
Sbjct: 63  IVRDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAP 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  GDLS++     V   G  + LT +EY ++E L       +TK   +  ++D 
Sbjct: 123 QRPAILSVGDLSLDPAKHQVSRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWDT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E +  I++V+I  LRKKL +   G   IETV G GY     A
Sbjct: 183 NYEGDENIVEVYIGYLRKKL-DLPFGTQSIETVRGVGYRFVGTA 225


>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 257

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L I+DD  +   ++  L+   + +       +     +    D +ILDL L D  G E 
Sbjct: 34  LLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLEF 93

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RSR 120
              L+      PV +L+    + DKV GL+ GADDY+ KPF   EL+ARI+A +R     
Sbjct: 94  CCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLRANPGA 153

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
           G A  L+  G+L ++L  +TV+V G  ++LT KE+Q++  L+  +N  +T+E     L+ 
Sbjct: 154 GTAPRLLQAGNLEIDLRNQTVKVDGQEVYLTAKEFQLLACLAENRNHLVTREEIRKRLWR 213

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D +     ++IDV I  LR+K+        +I TV GRGY   E
Sbjct: 214 DSKIYSWSRVIDVHIQHLRQKVEETPSQPRHIVTVPGRGYRFME 257


>gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120]
 gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120]
          Length = 233

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD      ++L L++E + +Y    G +   L +  +   +ILD+ + ++ G EV
Sbjct: 7   ILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R   I TP+ +LS  +   DK+ GL +GADDY+ KPFN  EL  R++AI+RR +  
Sbjct: 67  CRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQM 126

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +Q  ++ G + V+     V V G  +HLT  E+ ++ LL+       + E    
Sbjct: 127 SQVEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTXEFDILFLLASEPGRVFSSEYIFE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  +     K + V I  LR KL  A GG+N I+T+WG GY + 
Sbjct: 187 KIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 232


>gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
 gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis
           Re117]
          Length = 246

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+ +LA  + +  +   +   +   G + +   +    D ++LD  L    G 
Sbjct: 22  IKVLVVDDEPSLAELVAMGTRMLGWEATMAHDGPEAVATARSLAPDVLVLDWMLPGFDGP 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV  L+   ++ED++ GL +GADDY++KPF+ EE++ R+  +V RS 
Sbjct: 82  EVLRKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDYVAKPFSLEEVLIRLHRLVERSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +V GDL +N D+  V   G  I LT  E+ ++  L       ++K   L+++
Sbjct: 142 AATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFDLLSYLMNNARRVVSKSQILDNV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    + +  I++++I  LRKK+   A  +  I TV G GYVL+  A
Sbjct: 202 WHYDFDGQANIVELYISYLRKKIDVDA--EPMIHTVRGVGYVLKPAA 246


>gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
 gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus
           CTV-05]
          Length = 240

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 RGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
               +            I T  L ++ + + V      +  LT KE+ ++  ++ +    
Sbjct: 124 MMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 242

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++  +    G D IE  + +    I+LDL L    G  +
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLMLPGCDGLTI 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++  S   D++ GL+ GADDYI KPF+  E+V R+R ++RR    
Sbjct: 73  CRTIRQFS-NVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131

Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +         L ++         G  + LT  E+++++ LS       ++E  L+ L
Sbjct: 132 NDGMKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           YD       + ID  I  LR+KL       ++I TV+G GY       +E
Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241


>gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++++A+ ++  L+ + +NV V + G + +E+ K  +F  +ILDL L DI G E+
Sbjct: 4   ILIIEDEESVANVLKAYLEKDKYNVSVCNSGMEALEVYKEIDFQLVILDLMLPDIDGEEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+  +S+ D++ GL  GAD+Y+ KPF+  EL AR+ A+ RR    
Sbjct: 64  CKIIRRTS-DVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINTS 122

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +   G L ++ + + VE++G  I  T  E+ ++  L + K   L++E  +  ++ 
Sbjct: 123 EKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVFG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   + IDV I  +RKK+        YI TV   GY  
Sbjct: 183 IDFDGYDRTIDVHIKNIRKKIEEDTKNPKYIITVTKVGYKF 223


>gi|187933115|ref|YP_001885875.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187721268|gb|ACD22489.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++DDK +  +I + L +E + ++    G   +++    +   +ILD+ + ++
Sbjct: 1   MKNYNILVVDDDKTITEAIGVYLVNEGYKIFKAYDGIQALKVIDEEDIHLVILDIMMPNM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G      +R  +   P+ +LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +R
Sbjct: 61  NGTRTTIKIREER-QIPIIMLSAKSEDTDKILGLNLGADDYITKPFNPLELIARVNSQIR 119

Query: 118 RSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R           ++I    + +N ++K V V G  I LT  E++++ LL    N   + E
Sbjct: 120 RYTKFSPLKENNNVITVAGIELNKESKEVFVDGENIRLTPLEFKILTLLMDNPNRVFSIE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++      V  + V I ++R+K+        Y++ VWG GY + +
Sbjct: 180 EIYERVWNEPVFNNVDTVTVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230


>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
 gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Yersinia pestis FV-1]
 gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
 gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
 gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
          Length = 239

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +       G + +   +      I+LDL L    G  +
Sbjct: 14  VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 74  CREIRRFS-DIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L +N        QGH + LT  E++++++L+ +     ++E  LN+LYD  
Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  L++KL    G K +I  V+G GY   
Sbjct: 193 RVVTDRTIDSHIKNLQRKLELLDGEKPFIRAVYGMGYRWE 232


>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 222

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ AL   I   L    ++V  ++   D +   +    D IILD+ +  + G +
Sbjct: 3   KILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKGTQ 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ L+ +    + PV I+S  SS  D V GL+ GADDYI+KPF+ + L+A+I+ ++R+ 
Sbjct: 63  LLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLRKK 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++I    + V+L+   V +    I LT KE++++           ++   L++++
Sbjct: 123 QEKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLLSNIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + +D  +  LRKKL +     N I+++   GY+L
Sbjct: 183 GYDADIFTRTVDSHVSSLRKKLEDKG---NLIKSLPKVGYLL 221


>gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 247

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 124/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +LA  + + L+   ++V V   G + +++ + Y  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R+   + P   L+   +++D+V GL +G DDY++KPF+ EE++ R+  IV+R+ 
Sbjct: 82  ELLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAG 141

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+    +  GDL +N D + V      + LT  E++++  L       ++K   L+ +
Sbjct: 142 VIAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +V I++++I  LRKK+         I TV G GY+L+ 
Sbjct: 202 WNYDFGGQVNIVELYISYLRKKIEAN--HPPMIHTVRGAGYILKP 244


>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 230

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LD+ L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A++RR+ 
Sbjct: 64  CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRAG 123

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R   +     G + V++++    V G  + LT  E++++  L  R     ++E  L  +
Sbjct: 124 ARPSERPPESVGPIRVDVESHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLEDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++   E E + +D  + +LR+KL     G++ +ETV G GY L + ++
Sbjct: 184 WEMSAEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDPSE 228


>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ATCC
           BAA-365]
 gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 237

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 135/236 (57%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   +
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRDEEDN 236


>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
 gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
          Length = 260

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 233

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   ++L L+ ENF+V  T  G + + L K  ++D I+LDLGL DI G  
Sbjct: 4   KVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDINGEH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R     TP+ I++   S+ +KV   + G DDYI KPF K EL+ARI+AI+RRS  
Sbjct: 64  ICKKIREMS-ETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNK 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  ++I+T    +NL+    +  G +I LT KE +++  L       L ++  + H
Sbjct: 123 IKSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKH 182

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++         + +DV I  +R+K+        +I+T+ G GY  
Sbjct: 183 VWGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKF 227


>gi|289678852|ref|ZP_06499742.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae FF5]
          Length = 236

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 12  MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 72  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 131 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 191 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 229


>gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 246

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 19  MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 78

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 79  MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 137

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 138 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 198 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245


>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
 gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 111/229 (48%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F V     G + +E  + ++ D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDADLLIIDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRE-NSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     +   G L +N D K V V G  I LT  EY ++ LL        + +   
Sbjct: 123 GNLNQQPDGQVYKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 231


>gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131]
 gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131]
          Length = 220

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F +     G+ G        +DA++LDL L +I G 
Sbjct: 1   MRILLIEDDRLIGDGLKVGLTQLGFTIDWFMDGKQGQLALFDAPYDAVVLDLSLPNIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E++AR++A++RR  
Sbjct: 61  DILKHWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S +  GD+ ++  A TV  QG  + L GKE+ ++ L     N   ++ +    LY+
Sbjct: 121 GQLSSKLTHGDVEMDPVAMTVTQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V I  LR+KL N      +I T+ G GY L ++
Sbjct: 181 WDEEVSSNSVEVHIHHLRRKLGN-----KFIRTIHGVGYRLGDD 219


>gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 237

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 107/226 (47%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   +  +LK E  + +Y       G  L +  + D I+LD+ L D  G+
Sbjct: 9   KILIIDDEEDILKLLSTVLKREGLDDIYTAGDANSGYALFEKEDPDIILLDIMLPDGDGY 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    + P+  +S  +   D+V G   G DDYI+KPF+ +E+  R++A +RR+ 
Sbjct: 69  EICKRIRAIS-NVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTN 127

Query: 121 GHAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    T    G   ++     V   G  + L  KEY++   ++   N  L+KE   +
Sbjct: 128 QRNEKYQDTIYELGPFKIDEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQISS 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++          I V I +LR+K+ +      +I    G GY   
Sbjct: 188 KVWGEDYIGFDNTIMVHIRRLREKIEDDPSNPKHIINKKGLGYKFV 233


>gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 224

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 7   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIMLPGRDGMDI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 67  CKELRSFS-AVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +    L V+ +       G  + LT  E +++   +       +++  L+ LY   
Sbjct: 124 ATDPLAAKGLQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 184 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 223


>gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 224

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V +   G DG+ L +   +D +ILD+ L ++ G+
Sbjct: 1   MRILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNLPEMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR   +ST V +++    +E+KV+GL+ GADDY+ +PF   EL+AR+R ++RRS 
Sbjct: 61  EVLSRLRKT-VSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S  +  GDL ++           RI LT KE+ ++ LL       +++   ++ ++
Sbjct: 120 QTTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFETKLIHTLRGVGYVLE 221


>gi|56416091|ref|YP_153166.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197365017|ref|YP_002144654.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|204926850|ref|ZP_03218052.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|56130348|gb|AAV79854.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096494|emb|CAR62101.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|204323515|gb|EDZ08710.1| DNA-binding response regulator BasR [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|322615448|gb|EFY12368.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618508|gb|EFY15397.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322622079|gb|EFY18929.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627151|gb|EFY23943.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322631110|gb|EFY27874.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322637671|gb|EFY34372.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322642482|gb|EFY39083.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322643642|gb|EFY40196.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648285|gb|EFY44745.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653516|gb|EFY49846.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659657|gb|EFY55900.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322662133|gb|EFY58349.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666120|gb|EFY62298.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672540|gb|EFY68651.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675969|gb|EFY72040.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680454|gb|EFY76492.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322684651|gb|EFY80655.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194670|gb|EFZ79861.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323197156|gb|EFZ82296.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201727|gb|EFZ86791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323206241|gb|EFZ91203.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323213252|gb|EFZ98054.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215623|gb|EGA00367.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222045|gb|EGA06431.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227912|gb|EGA12066.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323229081|gb|EGA13210.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236308|gb|EGA20384.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237572|gb|EGA21633.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241762|gb|EGA25791.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248090|gb|EGA32027.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323254579|gb|EGA38390.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323258361|gb|EGA42038.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259640|gb|EGA43274.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265913|gb|EGA49409.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323270355|gb|EGA53803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 222

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
 gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
          Length = 224

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   + + L+   + V     G++ +      + D I+LD+GL ++ GF
Sbjct: 1   MKILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R      P+  L+      D + GL+ GADDY++KPF+  ELVARIR I++RS+
Sbjct: 61  EVCRRIRQRS-EVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQ 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G+LS++  A   ++ G  I LT +E  ++ LL        ++   ++ ++
Sbjct: 120 KAQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   + +D  +  LR KL  A G  + IETV   G  LR
Sbjct: 180 GAGSQVSDRTLDSHLRNLRAKLEQAGGN-DLIETVHAVGIRLR 221


>gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 227

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+  +   ++  L+ E + V     GE+ + + +  + + I+LD+ +  I G 
Sbjct: 4   IKILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGV 63

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           EV R LR       T +  L+       ++  L  G DDYI+KP      ++RI+A++RR
Sbjct: 64  EVCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRR 123

Query: 119 SRGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           S    Q      I  G LS++ D  +V+     I L  KE++++ LL  +     ++E  
Sbjct: 124 SDRLPQEEGLDVIKIGGLSIDRDRVSVQKGEEVIELAKKEFELLFLLVSKPGKVFSREEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N ++        + IDV I KLR+K+ +      YI+T+ G GY   
Sbjct: 184 FNKVWGTDVIVGNRTIDVHIRKLREKIGDD-----YIKTIKGIGYKFE 226


>gi|319934752|ref|ZP_08009197.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319810129|gb|EFW06491.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +  +IE+ LK++ ++VY  + G++G+ +         I+D+ +  + G ++
Sbjct: 5   VLVVEDEIEICDAIEIYLKTQGYHVYKANNGQEGLNIISNQTIHLAIVDIMMPIMDGIQM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R      P+ +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 65  TMKVRE-NYDFPIIMLSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVSSQLRRYSRY 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++  V G L +NLD K V V+G  I +T  E+++++LL        + +  
Sbjct: 124 LNVILDQQHENSYVVGGLELNLDTKQVTVEGKIIKVTPIEFKILQLLMEYPGKVFSADNI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++   D      + V +  LR+K+        Y++ VWG GY + +
Sbjct: 184 YESVWQ-EDAISTDTVMVHVRNLREKIEIDPKNPRYLKVVWGVGYKIEK 231


>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
 gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
 gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LAH +   L++  F V +   G+D     +  + + ++LDL +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+S AA       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFE 224


>gi|257884277|ref|ZP_05663930.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|293555117|ref|ZP_06674713.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1039]
 gi|293567467|ref|ZP_06678814.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1071]
 gi|294614256|ref|ZP_06694175.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1636]
 gi|294620698|ref|ZP_06699905.1| transcriptional regulatory protein ResD [Enterococcus faecium
           U0317]
 gi|257820115|gb|EEV47263.1| transcriptional regulator [Enterococcus faecium 1,231,501]
 gi|291589864|gb|EFF21665.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1071]
 gi|291592915|gb|EFF24505.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1636]
 gi|291599678|gb|EFF30688.1| transcriptional regulatory protein ResD [Enterococcus faecium
           U0317]
 gi|291601718|gb|EFF31974.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1039]
          Length = 238

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++        +D I LDL L  + 
Sbjct: 1   MNILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDAFLENPQHWDMITLDLNLPTLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
           S                 I T    +N   +   +    I  LT KE+ ++  L+ +   
Sbjct: 121 SELAEAREEAAVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKPRQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 VFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 236


>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E +   V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREEK-NTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  + Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNNNHQTTVKYQDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRQELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDAKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 245

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A  I + L+   ++ +      +  E  +    D +ILD  L    G  
Sbjct: 3   RILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLPGESGVS 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R    +    + +L+  SS +D V+GL +GADDY+SKPF+  EL+ARIRA++RR 
Sbjct: 63  LARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRRK 122

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              A ++ +  G L ++  A  V  Q   + L   E++++  L        ++   L+ +
Sbjct: 123 LPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRGQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LR  L+   G    IETV G GY L
Sbjct: 183 WGDHVFIEERTVDVHIKRLRGVLAPY-GCAELIETVRGAGYRL 224


>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
 gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
 gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
 gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
 gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
 gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
 gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
 gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+  +   ++  L+  N+ V  +  G DG    K  + D I+LD  L +I G E
Sbjct: 4   KVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNISGIE 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VLR +R  K   + PV +L+  +   DKV GL+ GADDYI+KPF+ +EL+ARI +++RR 
Sbjct: 64  VLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLRRY 123

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   +++ TG+L ++L    V     +I LT KE+++++LL   K   L++   L
Sbjct: 124 NLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNYLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I  LRKK+ +    + YIET+ G GY +
Sbjct: 184 DKIWGYEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKI 229


>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 245

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 241


>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 230

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L S+ + +         IEL +  + D ++LDLGL  + G E
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSGHE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +LR  R   +  PV ILS  +     V+ L+ GADDY++KPF   ELVARIR  +R    
Sbjct: 67  LLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHKFQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + +  TGDLSV+L  + V+V+G  + L+ KEY ++ +L       LT    L  ++
Sbjct: 127 QQGEKPIFQTGDLSVDLVKRIVKVEGKEVKLSPKEYDILRMLVQHAGKVLTHHFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D  +V+ + V++ +LR+K+  +     YI T  G GY LRE
Sbjct: 187 G--DSTDVQYLRVYVRQLRQKIEKSPDQPRYITTETGVGYRLRE 228


>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 225

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +   L+ E F +     G  G+ L +   + AI+LD+ L    G+
Sbjct: 1   MRILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   LR     TP+ +L+      D+  GL  GADDY++KPF+   L+AR+RA+VRR  
Sbjct: 61  QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL +   A         + LT KE+ ++E L+ R    ++K   +  ++D
Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    +++V+I  LR+K+ +   G+  I T+ G GY+L  + 
Sbjct: 181 TAYDGGANLVEVYIRSLRRKI-DVPYGRQSIRTIRGAGYLLARDG 224


>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
 gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
           coli UTI89]
 gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
           APEC O1]
 gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
 gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
 gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
 gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
          Length = 260

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLISTIRGMGYSFV 256


>gi|323132633|gb|ADX20063.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 7   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 67  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 127 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 187 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 227


>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+  +   +      E FN+     G++G+      + D +ILD+ +  + G  V
Sbjct: 9   ILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKVDGITV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +R    + PV +L+     EDK+ G + GADDYI+KPF+ + L+A+++A+++R+   
Sbjct: 69  LEMIRKVS-TVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLKRTSED 127

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S +   D L++N  +  V+V    I+L+ KE++++  LS  +   L+++  L++++  
Sbjct: 128 TFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTILDNVWGL 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++ +D  I +LR+KL N A    YI TV G GY   
Sbjct: 188 DYYGDLRTVDTNIKRLREKLGNKAS---YIVTVRGSGYRFE 225


>gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille]
 gi|151281257|gb|ABR89667.1| oxidative stress resistance two-components response regulator
           [Janthinobacterium sp. Marseille]
          Length = 248

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 8/216 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L  + FNV   +  +   +L     +D ++LDL L    G  + R LR A   TP+ +L
Sbjct: 31  YLSEQGFNVVTAENAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 90

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTG 130
           +      D++ GL+ GADDY++KPFN  ELVARI A++RR        +          G
Sbjct: 91  TAKGEDVDRIVGLEMGADDYLAKPFNPRELVARISAVLRRVGPEEIPGAPSETPQSFTFG 150

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           +  ++L  +T++     + LT  E+ ++++ +      L++E  +        E   + +
Sbjct: 151 EFVLDLGTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVFDRSL 210

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DV I +LRK +        YI+TVWG GYV     K
Sbjct: 211 DVQISRLRKLIEPDPSTPLYIQTVWGLGYVFIPEGK 246


>gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica]
 gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2]
 gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
           14580]
 gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580]
 gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2]
          Length = 242

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 9/237 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+ A+   ++ +L  E F  V      E+ +++ K      I+LD+ +    GF+
Sbjct: 6   ILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGFD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+  L+  +S  DK+ G   GADDYI+KPFN  EL+ARI+A ++R+  
Sbjct: 66  VSPEIRR-HTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYI 124

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H +       S         + D   + V G  +  + +  Q+++      N  L+K+  
Sbjct: 125 HKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              ++      +   + V I KLR+K+        YI T+ G GY    N   +  E
Sbjct: 185 YEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPNPARKESE 241


>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
 gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
           32953]
 gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
 gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
 gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
 gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
 gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
 gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
           31758]
 gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
 gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
           Nepal516]
 gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
           Pestoides A]
 gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
 gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
 gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
 gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 235

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  + + +  +L  E +     + G   + L +  + D IILD+ + ++ G+
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V R +R     TP+  LS      D+V GL+ GADDYISKPF   E+ ARI+ IVRR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +    GDL V  +         R+ L+ +E  ++  L   K   +T++M  
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++     P+ + +D  I KLRK +         I TV G GY  +  A+
Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYRYQGTAQ 231


>gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272]
 gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227]
          Length = 240

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  ++LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|260778334|ref|ZP_05887227.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260606347|gb|EEX32632.1| DNA-binding heavy metal response regulator [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 226

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + E   +     G DG+       +D I+LD+ L    GF
Sbjct: 1   MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    +TPV ILS   S++++V+GLQSGADDY+ KPF   EL+AR +++ RR +
Sbjct: 61  EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +   +LS++L   ++E  G  I L  +E+ +I+L+     T ++K   L  +
Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTP-LIHTLRGVGYVLK 223


>gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 231

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I L ++   FNV  TD GE  +EL +    D +ILD+ L  I GF V
Sbjct: 4   ILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 64  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 124 KKELELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227


>gi|311104682|ref|YP_003977535.1| transcriptional regulator OmpR 2 [Achromobacter xylosoxidans A8]
 gi|310759371|gb|ADP14820.1| transcriptional regulatory protein OmpR 2 [Achromobacter
           xylosoxidans A8]
          Length = 244

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 110/213 (51%), Gaps = 8/213 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV+V +  ++  +L +   FD ++LDL L    G  + R LR    +TP+ +L+ 
Sbjct: 30  SEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLTA 89

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
            +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G  
Sbjct: 90  KAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPY 149

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           ++NL  +T+   G ++ +T  E+ ++++ +      L+++  +        E   + +DV
Sbjct: 150 TLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            I +LRK +        +I+TVWG GYV   + 
Sbjct: 210 QISRLRKLIEPNPSKPVFIQTVWGLGYVFVPDG 242


>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. 83/13]
 gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis ATCC 23457]
 gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
 gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NF 2653]
 gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M28]
 gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           melitensis M5-90]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADPIRTVRGAGYSF 227


>gi|226330037|ref|ZP_03805555.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
 gi|225200832|gb|EEG83186.1| hypothetical protein PROPEN_03950 [Proteus penneri ATCC 35198]
          Length = 227

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   + L L+SE F VY  +  + G+      + D +ILDLGL D  G   
Sbjct: 6   ILIIEDEKEILRFVRLALESEGFRVYEANECQRGLIEAASRKPDLVILDLGLPDKDGLCF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           ++  R    STP+ +LS   S +DKV+ L +GADDY++KPF   EL+ARIRA +RR   +
Sbjct: 66  IQDFRQWS-STPIIVLSARDSEQDKVKALDAGADDYLTKPFGISELLARIRASLRRFVKQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +    GD++++   + V  Q   +HLT  E++++  L       LT+   + H++ 
Sbjct: 125 ETQSTQFTFGDITIDWVNRIVTRQNDPVHLTPTEFRLLSELVNNSGKVLTQRHLMQHVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 185 PNFVEHSHYLRIYMGHLRQKLETDPACPVHLMTETGIGYRF 225


>gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 225

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/225 (37%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     I   L+ E F V  +  G++G+ +    E+  I+LD  L +I G 
Sbjct: 1   MKILVIEDDQTTREFIAKALEQEGFIVDNSGDGKEGLMMAISCEYQLIVLDRMLPNIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R    +TPV ILS + S++ +V GL +G+DDY++KPF   EL+ARI  I+RR+R
Sbjct: 61  KILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRNR 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + I   +L +NL ++ V +  + I L  KE+ ++  L+   N  +++       
Sbjct: 121 PIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEAA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +IDV I KLRKKL    G  N IETV G GYV+R+
Sbjct: 181 WDYHFDPKTNVIDVHIAKLRKKLEQ-GGAINLIETVRGAGYVIRQ 224


>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
 gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
          Length = 220

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK +AH +EL L  E   V V   G D +   + ++ D +ILD+ L  + G 
Sbjct: 1   MKILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEFKPDVVILDIMLPGLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR       + +L+ +  ++DKV     GADDY+ KPF+ EEL+ARI+A+ RR +
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I +  + + +D   V V G  + L+  E+ ++ LL   +N  L+KE  L+ ++ 
Sbjct: 120 ERKEEVISSEGIELYVDQHRVIVDGKEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+    +++V+I  LRKKL +      YI+T+ G GY  R++
Sbjct: 180 DYDDERENLVEVYINYLRKKLGDKG---KYIKTIRGIGYSFRKD 220


>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
 gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii]
          Length = 228

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LAH +   L++  F V +   G+D     +  + + +ILDL +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K++  A       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFE 224


>gi|16767542|ref|NP_463157.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161617435|ref|YP_001591400.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991502|ref|ZP_02572601.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231307|ref|ZP_02656365.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168237001|ref|ZP_02662059.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168243710|ref|ZP_02668642.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168263368|ref|ZP_02685341.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466994|ref|ZP_02700842.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168821248|ref|ZP_02833248.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194446648|ref|YP_002043542.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194451690|ref|YP_002048283.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194469502|ref|ZP_03075486.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194734993|ref|YP_002117227.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250754|ref|YP_002149207.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262661|ref|ZP_03162735.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|198245395|ref|YP_002218184.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387181|ref|ZP_03213793.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205355063|ref|YP_002228864.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207859446|ref|YP_002246097.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|224586057|ref|YP_002639856.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|238912749|ref|ZP_04656586.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16422853|gb|AAL23116.1| response regulator in two-component regulatory system with BasS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56540683|gb|AAV92795.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|161366799|gb|ABX70567.1| hypothetical protein SPAB_05292 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405311|gb|ACF65533.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194409994|gb|ACF70213.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194455866|gb|EDX44705.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194710495|gb|ACF89716.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195630642|gb|EDX49254.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197214457|gb|ACH51854.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197240916|gb|EDY23536.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197290033|gb|EDY29392.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197939911|gb|ACH77244.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199604279|gb|EDZ02824.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205274844|emb|CAR39904.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205330124|gb|EDZ16888.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334263|gb|EDZ21027.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205337324|gb|EDZ24088.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205342091|gb|EDZ28855.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205347889|gb|EDZ34520.1| transcriptional regulatory protein BasR/pmrA [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206711249|emb|CAR35625.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470585|gb|ACN48415.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261249390|emb|CBG27254.1| Two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996618|gb|ACY91503.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301160784|emb|CBW20315.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915397|dbj|BAJ39371.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320088702|emb|CBY98460.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223164|gb|EFX48234.1| Transcriptional regulatory protein basR/pmrA [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|326625984|gb|EGE32329.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326630216|gb|EGE36559.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332991107|gb|AEF10090.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 222

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952]
 gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952]
          Length = 229

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 122/227 (53%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + + LK+E +       G + +   +   + + +ILD+ + ++ G
Sbjct: 1   MKILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTINDIELLILDIMMPEVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ +L+  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVKILRKES-QLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++    L +N D+  V  + G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 TMQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++        K + V +  LR K+  A GG+  I+TVWG GY +
Sbjct: 180 FERVWKQESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKI 226


>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 239

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A ++   L+ +   V       D     +    DA++LD+GL D  G +
Sbjct: 11  RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A  + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR RA++RR + 
Sbjct: 71  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQR 130

Query: 122 HAQSLIVTGD-----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   +        S++   + V +QG  + LT +EYQ++  L  R    L++E  L+
Sbjct: 131 LQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLD 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D  +  LR KL   A  +++I T  G GY L
Sbjct: 191 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235


>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 237

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   +   L+ E + V+    GE+ +E     + D I+LD+ L  + G+EV
Sbjct: 12  VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+  LS  +  ED++ GL  G DDY++KP + + LVA ++A++RRS 
Sbjct: 71  CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRSG 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    L +  D    E+ G  + LT  E++++  L        T++  L  ++ 
Sbjct: 131 VEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIWK 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                  + +D  I  LR+KL + A    +I+TV G GY   +  ++E+ E
Sbjct: 191 DAMMVTERTVDAHIKNLREKLGDFA---KHIQTVRGVGYRFVQ--EEESAE 236


>gi|254228780|ref|ZP_04922203.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262396500|ref|YP_003288353.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151938727|gb|EDN57562.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262340094|gb|ACY53888.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 243

 Score =  259 bits (663), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKAQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQP 241


>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
 gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
 gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
 gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
 gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
 gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
 gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
 gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
 gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 -TLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 126/227 (55%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++
Sbjct: 8   MKNYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNL 67

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 68  NGFEVAKMIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLR 126

Query: 118 RSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT++  + 
Sbjct: 127 RSNNQSTDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 187 KIWGYEYAGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 228


>gi|326802899|ref|YP_004320717.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650426|gb|AEA00609.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Aerococcus urinae ACS-120-V-Col10a]
          Length = 238

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%)

Query: 1   MRILLIEDDKALAHSIELML-KSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDI 57
           M+IL+IED+ ++A  + + L +   +  + +  G++G +  K +E   D +ILDL L   
Sbjct: 1   MKILMIEDNTSVAEMLSMFLDQEAGWESHFSYDGQEGYDYFKAHEDEIDIVILDLNLPSK 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + + +R +     + +L+   S  D+V GL  GADDYI+KPF+   LVA++ A++R
Sbjct: 61  DGISICQDIRKSNQDVIIIMLTARDSESDQVLGLGLGADDYITKPFSPLTLVAKMHALLR 120

Query: 118 RSRGH---------AQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
           R   +          +SLI T  L+++ + +     G  I +LT KE+ ++ LL+     
Sbjct: 121 RRDANDNRESQDQEEKSLIKTKYLTIDPNTREASFHGQAIANLTPKEFDILALLASHPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             T++  L  L++     + + +D  I KLR+K+     G   I TVWG GY   E+ +
Sbjct: 181 VFTRDHLLTSLWEDPFYGDERTVDAHIKKLRQKMEKN--GPQAIRTVWGVGYKYDESGE 237


>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
 gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
          Length = 235

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 121/232 (52%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +  +I + +K++ ++VYV + G  G+EL +  +    I+D+ +  + G  +
Sbjct: 5   ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR +  
Sbjct: 65  TMKLRE-NYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQI 123

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         L+  GDL +N + K V ++   +HLT KE++++ELL  +     + 
Sbjct: 124 LRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFSA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E    ++++  +      I V I KLRKK+        YI+ VWG GY + +
Sbjct: 184 EQIYENVWE-EEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGYKIEK 234


>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
           [Psychrobacter sp. 1501(2011)]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFE 61
           IL++ED+ A+   I   L+   F     +   D       +    I+LD  L     G +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGNQSGID 65

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  +     P+ +L+     ++KV+GL +GADDYI+KPF+  ELV+RI+A++RRS
Sbjct: 66  LCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    LS++  ++ +   G  + +   EY+++           T+   L+ +
Sbjct: 126 SVLSGEKPIEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L        +I+TV G GY  
Sbjct: 186 WGGNVYVEDRTIDVHIRRLRKVLEPY-NYAGFIQTVRGTGYRF 227


>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +EL L +E F+V     G   I L + +    I+LD+ +  + GF
Sbjct: 7   IRILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R ++       V +L+    ++D+V+GL  GADDY+ KPF+ +EL+ARIRA +R   
Sbjct: 67  ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G  S++   K ++ +G  + L+  EY++++ +       L+K   L+ ++ 
Sbjct: 127 PMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDKVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E  I++V++  LR KL +       I T+ G GY +
Sbjct: 187 YDFGGEENIVEVYVRSLRDKLGD--KEHRLIRTLRGAGYRI 225


>gi|295692613|ref|YP_003601223.1| response regulator [Lactobacillus crispatus ST1]
 gi|295030719|emb|CBL50198.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 RGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
               +            I T  L ++ + + V      +  LT KE+ ++  ++ +    
Sbjct: 124 MMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPRQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 230

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +A  ++  L++E + V +   G +G+EL +  E   +ILD+ L  + G +
Sbjct: 5   QILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLPGMTGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + ++LR      PV +L+ +SSIEDKV GL+ GADDY++KPF  EEL+ARI A++RR R 
Sbjct: 65  LCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGRE 124

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L+       G  I LT KE   +ELL        ++E  L++++
Sbjct: 125 QRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLRE 223
              ++P   ++DV++ +LR K+    G     ++TV G GY L +
Sbjct: 185 GMHEDPLTNVVDVYVRRLRSKIDE--GHPLALLKTVRGLGYRLDD 227


>gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii
           AB900]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYELKLIHTIRGLGYKI 219


>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 221

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630]
 gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +   +   L SEN++V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E 
Sbjct: 180 YNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229


>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 231

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD+ +  +I++ L  E F V     G + +EL K +E + +I+D+ +  + G  
Sbjct: 3   KILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR   
Sbjct: 63  TTLKVRETS-SIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQ 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   G L +N + K V V G  I LT  EY ++ LL        + +  
Sbjct: 122 LGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 182 YEEIWNEEAIGADNTVAVHIRHIREKIEINPREPRYLKVVWGVGYKIEKQ 231


>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
           17244]
          Length = 236

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +  +I++ L ++ +NV+  + G++G+E+    +    I+D+ +  + G  +
Sbjct: 5   ILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 65  TMRLRET-YDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQI 123

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         +  V G L ++ D K V V G+++ LT KEYQ++ LL        +
Sbjct: 124 LNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVYS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     +++       + I V I KLR+K+       +YI+ VWG GY + +
Sbjct: 184 SEQIYEQVWN-EKAINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGYKMEK 235


>gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226]
 gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226]
          Length = 224

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ + + I+  L+ E ++V+    G + IE       D +ILDL L D+ G E+
Sbjct: 8   ILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLPDLSGEEI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+     P+ +L+    + D++ GL  GADDY+ KPF+ +ELVAR+ AI RR    
Sbjct: 68  CKKIRIES-QVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGED 126

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                       DL+V+L+   V  +G  I LT  EY+++ LLS       T+E  +  +
Sbjct: 127 TVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREELVTKI 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   + ID  I  +R+K+ +      YI TV+G GY  
Sbjct: 187 LGYDYEGYDRTIDTHIKNIRQKIDDE--QNKYIVTVYGTGYKF 227


>gi|16264749|ref|NP_437541.1| putative two component response regulator protein [Sinorhizobium
           meliloti 1021]
 gi|15140887|emb|CAC49401.1| putative two-component response regulator [Sinorhizobium meliloti
           1021]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  L+  +   L    + V+       GI        D +ILD+ L D  GFE
Sbjct: 4   RVLIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGHRTPDVVILDVMLPDFDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R      PV +L+      D++ GL+ GADDY+ KPFN  EL+AR++AI+RR  G
Sbjct: 64  TCRRIRAVS-DVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     +  G L ++  +++V + G    LT  ++ ++  L+     TL++E  ++ + 
Sbjct: 123 SAAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVK 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + IDV I ++R  + +       I TV G GYV 
Sbjct: 183 GEELDAFDRSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAATTPRNGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 242


>gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
 gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
           16841]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +   IE+ LKS+ ++VY    G +G+++ +       I+D+ +  + G  +
Sbjct: 11  ILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEPIHLAIVDIMMPRMDGVTM 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR      PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 71  TIKLREHH-EFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTRF 129

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +       V G L +N D     V G+ + LT  E++++ LL        + E 
Sbjct: 130 MGMAQKKEEEGRNYVIGGLELNEDTIEFSVDGNPVKLTPIEFKILALLMRNPGRVFSTEE 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++         I V +  +R K+        Y++ VWG GY + +  
Sbjct: 190 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKIEKQP 240


>gi|153831657|ref|ZP_01984324.1| response regulator receiver domain protein [Vibrio harveyi HY01]
 gi|148872167|gb|EDL70984.1| response regulator receiver domain protein [Vibrio harveyi HY01]
          Length = 243

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       +     +   FD +ILD GL D  G +V
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVLRATNIAEAKAQYQQQSFDLLILDRGLPDGDGLDV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR  +   PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQKQDWNPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSHT 131

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +  +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 TEVQTDKNVVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 192 LLDHVWNTNHSGYHHTVCSTINRLRSKLSLSGSDHHFIQTVWGVGYKFQP 241


>gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 227

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 70  CRELRSFS-AVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 STDPHTPKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 226

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L   IE  L+ E   V  T  G + ++  K + +DA++LD+ + ++ G 
Sbjct: 1   MKVLVVEDESKLTSLIEKGLRCEGIEVESTSSGLEALDQVKRFSYDAVVLDIMIHELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A I TPV I++      +K+ GL +GADDY+ KPF  +ELVAR+ A+ RRS 
Sbjct: 61  SVLKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++   DL+VNL  + V   G +I +  KE+ ++  L         +     ++++
Sbjct: 121 GQGLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +PE  ++DV+I +LR+K+ +    K  +ETV G GY +R
Sbjct: 181 FDFDPETNLVDVYIGRLRRKI-DQGDSKKLLETVRGVGYRIR 221


>gi|168204365|ref|ZP_02630370.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170664057|gb|EDT16740.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 234

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++G        + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNGN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|162421230|ref|YP_001606897.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
 gi|162354045|gb|ABX87993.1| DNA-binding heavy metal response regulator [Yersinia pestis Angola]
          Length = 230

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/231 (36%), Positives = 133/231 (57%), Gaps = 4/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    F V V   G DG+ L   Y++D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  LR +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRASK-QTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRP 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 RDGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +D   + +  +++V I +LR K+ +       + TV G GYVL      +T
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DTPYPVKLLHTVRGMGYVLETRPDRQT 229


>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
           J1-208]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS
Sbjct: 61  FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEDKDGIR-IVTVRGVGYKLEET 224


>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
 gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
          Length = 239

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+ A+   ++ +L  E F  V      E+ I + K  + D ++LD+ +  + GFE
Sbjct: 6   ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
              A+R      P+  L+  +S  DK+ G  SGADDYI+KPFN  ELVARIRA ++R+  
Sbjct: 66  ACAAIRE-YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTYK 124

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G + +       +       + V G  +  + +  Q+++      N  L+K+     
Sbjct: 125 QEDGRSSTPYAYEHFTFYPQFAELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      +   + V + KLR+K+   A    YI TV G GY    N ++
Sbjct: 185 VWGYPSYGDNNTVMVHVRKLREKIERDASDPEYIVTVRGLGYRFIPNPEE 234


>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
 gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
           49176]
          Length = 257

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           +IL+++DDK +A  +E+ L SE + V   +    G+ + K   +    ILD+ +  + G 
Sbjct: 26  KILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGL 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R      PV +LS  S+  DK+ GL +GADDY++KPFN  EL AR++A +RR  
Sbjct: 86  SMVKKIRETS-HIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFT 144

Query: 121 ----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                          +I  G L +N   + V        LT  EY ++ LL+       +
Sbjct: 145 EFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFS 204

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     +++ +       + V I +LR+K+   A     I+TVWG GY + +
Sbjct: 205 TDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257


>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
           27244]
 gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 230

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LA  +   L++  F V +   G+D     +  +   +ILDL +  + G
Sbjct: 4   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDYI KPF+ +ELVAR++A++RR 
Sbjct: 64  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRL 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 123 ERKAEPE-QNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHIN 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+S AA       +I+ V+G GY   
Sbjct: 182 PDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWIQAVYGVGYRFE 227


>gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG]
 gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus rhamnosus HN001]
 gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG]
 gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
 gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99]
 gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L     +D +ILD  L  + G 
Sbjct: 1   MKILLVEDDTTTIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++ +  G+L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G   IETV G GY LRE
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRE 223


>gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 248

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248


>gi|49081818|gb|AAT50309.1| PA2809 [synthetic construct]
          Length = 227

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 136/229 (59%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L    F V ++D G +G +L    ++D +ILD+ L    G+
Sbjct: 1   MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           ++LR++R A ++ PV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR S
Sbjct: 61  QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +   DL ++L  + V+ QG RI LT KE+ ++ELL  R    L K +  + ++
Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +I+V I +LR K+ +         TV G GYVL E  +DE
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQ-RLTHTVRGMGYVLEE--RDE 226


>gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 224

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  +   L    + V     G DG+ L +   +D IILD+ L ++ G+
Sbjct: 1   MRILVVEDELKAAEYLHQGLTESGYIVDHAVNGADGLHLAQQQVYDLIILDVNLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    ST V +L+    + DK+RGL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  SVLEQLRRTH-STRVMMLTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLMRRSE 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ LL  +    LT+   ++ ++
Sbjct: 120 NIPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFALLHLLMRQSGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSIRRLRAKI-DDPFDSKLIHTLRGVGYVLE 221


>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI R    
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|149908081|ref|ZP_01896749.1| Two component response regulator [Moritella sp. PE36]
 gi|149809087|gb|EDM69018.1| Two component response regulator [Moritella sp. PE36]
          Length = 226

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD  +   +    + E + V     G DG+ L     +D I+LD+ L    G 
Sbjct: 1   MNVLLIEDDLHITRFLTQGFRQEGYTVMHAGDGIDGLHLATTEHYDVIVLDIMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR    +TPV ILS   S+E++V GL+SGADDY+ KPF+  EL AR + + RR R
Sbjct: 61  AVLSELRGRGYTTPVIILSAKHSVEERVFGLKSGADDYLVKPFSFSELSARCQILTRRDR 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A     +   DL ++L  +T+      ++L  +E+ +I+LL     T L+K   L  +
Sbjct: 121 SQATPVHQLCYHDLKLDLLKRTLHRSNQLLNLNQREFVLIQLLLQNAETVLSKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGYQFDPQTNVVDVLVCRLRSKVDKDFELP-LIHTIRGVGYVLK 223


>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 238

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED   LA  +   L +  + V+    G   + L + ++ D +ILD  L  + G EV
Sbjct: 8   ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R  K STPV +L+  S   D V GL+ GADDY++KPF   EL+AR+RA++RR +  
Sbjct: 68  LRTIRQTK-STPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRI 126

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A  ++  GDL ++     V ++   + LT  E+ +++LL        ++ 
Sbjct: 127 QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRN 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ ++        + +D  + +LRKKL++       IETVWG GY L+  A 
Sbjct: 187 YLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEAP 237


>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
           JCVIHMP022]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAFEPPEQ 240


>gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 235

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N+  +    G++ ++  K    D I+LDL L  + G  V
Sbjct: 10  ILVVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVLDWVKQTPPDMILLDLMLPGMDGLTV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KPF+  E+VAR++ I++R +  
Sbjct: 70  CREIRRFS-DLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILKRCKRT 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +       L ++ +          + LT  E+++++ L+       ++EM LNHLYD  
Sbjct: 129 PEEAQKASLLVIDENRFQASWDQGPLDLTPAEFRLLKTLAQEPGKVFSREMLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL      + +I  V+G GY    + 
Sbjct: 189 RVVTDRTIDSHIKNLRRKLELLDSDQPFIRAVYGMGYRWEADV 231


>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
           J1-175]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V   + G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
 gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD ALA  +    K E+F+V  T  GE+ + + +    D ++LD  +  + G E
Sbjct: 5   KMLLVEDDAALAELLIWHFKREDFDVSHTVDGEEALLMAQETVPDIVLLDWMVESLSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    + E++ +DV I +LRK ++     ++ I TV   GY L  + 
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYALDTDG 231


>gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           NEM316]
 gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae
           2603V/R]
 gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909]
 gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21]
 gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515]
 gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae
           CJB111]
 gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1]
 gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B]
 gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L  E ++V V   G +G++     +FD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L+  K +T + +++   S+ D V GL  GADDYI KPF  EEL+AR+RAI RR   
Sbjct: 64  ITRRLQAEK-TTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DLS+N   ++       I LT +E+ ++ +L    N  +T+E  L 
Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           H++      E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 HVWKYDVAAETNVVDVYIRYLRGKI-DIPGRESYIQTVRGMGYVIRE 228


>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 245

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 115/231 (49%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 244


>gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQAARP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 242


>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EC4024]
 gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4113]
 gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4401]
 gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. EC1212]
 gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. G5101]
 gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. LSU-61]
 gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1125]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ +   +   L++E F+V     G +  ++ +  +    ++D+ + ++ GFE
Sbjct: 3   RILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS  
Sbjct: 63  LCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++  I  G ++++  +  +++      +  KE++++  L+       T+E  +  ++  
Sbjct: 123 ASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQR 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 183 DYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2846]
          Length = 221

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GHHHSVIEQSGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
           [Spirochaeta smaragdinae DSM 11293]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   ++  L+ E ++V   + GE         + D IILDL L  I G EV
Sbjct: 6   ILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLMLPGIDGVEV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R  +     P+ +L+  S   D + GL+ GADDY++KPF+ + LVARIRA++RR +
Sbjct: 66  CKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRRKQ 125

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +I   D+ ++     V+     + L+  E+ ++E L+       ++   +
Sbjct: 126 LKEFPPREEPVITIHDIVIDTIRHEVKCSDVSLDLSVTEFSILEFLARNPGWVFSRSQII 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +         + +DV I  LRKKL +     +YIETV G GY ++E  
Sbjct: 186 GAVKGEDYPVTERSVDVQILGLRKKLKDKG---DYIETVRGVGYRMKERV 232


>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L  SI   L+ + + V + D G + +E+ +   +D I+LDL L  I G 
Sbjct: 1   MKILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS  S++ D++ GL +GADDY+ KPF   EL AR+R ++RR  
Sbjct: 61  ELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRREY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL  +   + +  +G  I LT KE  ++E L   K   ++ E  L+H +D
Sbjct: 121 TQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    + V IC LRKKL +  G  + I    G GY L E
Sbjct: 181 SSVDPFSNSVRVHICSLRKKLRSVLGC-DPISNKIGEGYYLTE 222


>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  S+   L+ + +       GE+G+ELC    +D I+LDL L  I G 
Sbjct: 1   MHILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R    +TPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  EILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    ++ +   +   V G  + LT KE  ++E   L +N  ++ E  + HL+D
Sbjct: 121 IQEDVCLRCSRITFDTRTREASVDGTPLALTRKESALLEYFLLHRNRIISPEEMIEHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G        I V I  LRKKL  A G  + I+   G+GY+L E
Sbjct: 181 GSVNSFSNSIRVHISSLRKKLRTALGY-DPIQNKIGQGYILEE 222


>gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
 gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-29]
          Length = 231

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   I L +K   FNV  TD GE  +EL + +  D +ILD+ L  I GF V
Sbjct: 4   ILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGIDGFRV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 64  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 123

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 124 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 184 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 227


>gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE +    +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIRRVA 123

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 231


>gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 227

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   LK   +      LG  G+E+ K  ++D +ILD+ L DI G+
Sbjct: 1   MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV  L+    + D+V+GL+ GADDY++KPF+  EL+ARI++++RR +
Sbjct: 61  SVLQVLRQFS-KIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +   DL +++    V   G+ I L+  E+ ++  L L K   +T+    + +++
Sbjct: 120 YLQENELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   IDV + +LR K+ +       I T+ G GY +
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DEGYELKLIHTIRGLGYKI 219


>gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD ++A      L+   F V +   G + +   K  EFD +ILD+ L  I GF 
Sbjct: 3   KILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIMLPKIDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR++       P+ I+S      DK++G   GADDYI+KPF+  ELVAR+++ ++    
Sbjct: 63  ILRSI-QDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKNYER 121

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        I+   L +  D++ V V    + L  KE+ ++  +S   N   ++E 
Sbjct: 122 IKNKFDSNKKSDTILIRGLEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFSREE 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               ++      +   + V I ++R+K   +     YIETVWG GY ++
Sbjct: 182 LFEKVWGLDAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRIK 230


>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. infantis ATCC 15697]
 gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL         I TV G GY     
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKLGADT-----IRTVHGVGYAFEPP 238


>gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
          Length = 231

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDKA+  ++E+ LK E +NV     G+  ++  +  +   +++D+ + ++ G   
Sbjct: 6   ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPELDGLSA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R   ++ P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++  RR    
Sbjct: 66  TVKIREE-LNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQL 124

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G L ++ +AK + V G  + LT  EY ++  L        + +    +
Sbjct: 125 GGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I ++R+K+        Y++ VWG GY + +
Sbjct: 185 VWKEPAYSSENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230


>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGFE 61
           IL++ED+ A+   I   L+   F     +   +       +    I+LD  L     G +
Sbjct: 6   ILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGNQSGID 65

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  +     P+ +L+     ++KV+GL +GADDYI+KPF+  ELV+RI+A++RRS
Sbjct: 66  LCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I    LS++  ++ +   G  + +   EY+++           T+   L+ +
Sbjct: 126 SALSGDKPIEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L        +I+TV G GY  
Sbjct: 186 WGGNVYVEDRTIDVHIRRLRKVLEPY-NYAEFIQTVRGTGYRF 227


>gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
 gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP
           102891]
          Length = 219

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIVETLEKTGWVPELSQDGIDALYRATSEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  G+LS++     V  QG  I LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKVIKTVRGLGYQL 216


>gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
 gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bacillus cereus 03BB108]
          Length = 230

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGFE 61
           IL++ED+  +   I L L+   FNV     GE+ +E+ + ++  D  +LD+ L  I GFE
Sbjct: 4   ILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       V +L+     ++ ++GL  GADDYI KPF+  EL+ARI++++RR   
Sbjct: 64  VCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRRINL 123

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +    I +G   +N   +++  +G +I LT  EY ++  L    +  ++++  LN ++
Sbjct: 124 NMKDGDLIHSGPFVLNNLEESLYKKGKKIELTPTEYMILFQLMYNSSKPISRDELLNTIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E E K++DV I ++R+K+        Y+ T+WG+GY+ + + +
Sbjct: 184 GEHYEGETKVVDVNIRRIRQKIELNPSDPQYLLTIWGKGYIWKVSVR 230


>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
 gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
          Length = 266

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 11/239 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ ++  +   L+   F+V   D G  G  L   Y  D I+LDL L ++ 
Sbjct: 1   MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL AR++A++
Sbjct: 61  GLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120

Query: 117 RRS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS        G+   ++  G L++  +        H + LT  E++++  L  R   T+
Sbjct: 121 RRSDRAPIGTSGNHHEILSYGPLTLVPERFEAIWFDHPVRLTHLEFELLHCLLQRHGQTV 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + L  ++    + +++ I V +  LR KL        +I+TV+G GY L     D+
Sbjct: 181 APSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPTGDQ 239


>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 251

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALL 120

Query: 117 RRSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T++
Sbjct: 121 RRTNRAQLNSTNQQEILNYGPLTLVPERFEAIWFESAVRLTHLEFELLHCLMQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + L  ++    + +++ I V +  LR KL        YI+TV+G GY L   A
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLELPA 235


>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL++ED+  +   +   L  E+FNV+    GE+G+ +    + D ++LD+ +  + 
Sbjct: 1   MRKSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPVMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +L  LR    + PV +L+     EDK++G   GADDYI+KPF+ + L+A+++A+++R
Sbjct: 61  GLTMLEKLREVS-TVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R     S      L++N  +  V++ G  I L+ KEY+++  L   +   L+++  L++
Sbjct: 120 TREDLDSSFQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  + +LR+KL + +   NYI TV G GY   
Sbjct: 180 VWGIDYYGDIRTVDTNVKRLREKLLDKS---NYIITVRGSGYKFE 221


>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
 gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 127/229 (55%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  I   +KS  +       G D     + +  D ++LD  L D+ G  +
Sbjct: 8   ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  +R  +   + PV +L+  +  EDKV GL  GADDYI+KPF+ +ELVARI A++RR  
Sbjct: 68  LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+SL+  G ++++ ++  V + G  + +   E+++++ L    +   ++   L+ ++
Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + + E + +DV + +LRK L    G +N + TV G GY+L E  K E
Sbjct: 188 SNQLDIEERTVDVHVLRLRKALK---GQENLVRTVRGMGYMLSEKDKSE 233


>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
 gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
           8401]
 gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
 gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
 gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
           CFT073]
 gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
           536]
 gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
           str. 8401]
 gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
 gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
 gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
           winged helix family precursor [Shigella flexneri
           2002017]
 gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
 gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
 gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
 gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
 gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
 gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
 gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
 gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
 gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
 gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
 gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
 gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
 gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
 gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|110633256|ref|YP_673464.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110284240|gb|ABG62299.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 224

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+  A  ++           V   GE G  L     +D  ++D  L    G 
Sbjct: 1   MKILIIEDDREAASFLKKAFSEAGHIADVASDGEAGFALADGGNYDVFVIDRMLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V+  LR    +TP  ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR+ 
Sbjct: 61  SVIAGLRANGNTTPALILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLKRRAG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++L   GDL ++  + TV   G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 TRDVETLYRAGDLELDRLSHTVRRGGQEITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+         + TV G GY++R +
Sbjct: 181 DYHFDPQTNVIDVHVSRLRGKIERGFDKP-ILHTVRGAGYMIRAD 224


>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
 gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
 gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
           coli EC4100B]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL +DD  L   +   L  E F V +   G    +L   + FD ++LD+ L ++ GF+
Sbjct: 3   KLLLADDDTELCQLLHEYLTQEGFEVALAHDGATAAKLILDHSFDLMVLDVMLPNLNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      P+ +L+      D++ GL+ GADDYI+KP N  EL ARIR I+RR+  
Sbjct: 63  VLKTVRKES-QVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRRTEN 121

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       +  GD+ +N  ++ V +    + LT  E+ ++ LL     T ++++   
Sbjct: 122 VYSTKHKKLQSVHLGDVYINPASREVLLNNEVVKLTATEFDILYLLMSNAGTLVSRDDLS 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   E   + ID+ I  LR+KL     G   I+TV G GY
Sbjct: 182 EGCLGRTLEAYDRSIDMHISNLRRKLGPDTKGDERIKTVRGVGY 225


>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
 gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
           [Lyngbya majuscula 3L]
          Length = 224

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V V   G  G EL     +D +ILD  L  I G 
Sbjct: 1   MRILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRRSA 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H    +  G L ++L+ +     GH I L+ KE Q++          L+ +    H
Sbjct: 121 ATDAHPSQRLRVGQLELDLNNQIAYRHGHPIELSEKESQLLGYFMSHVGLLLSHKQIYQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+   + P+   +   +  LR+K+         I TV+G+GY  
Sbjct: 181 LWPSEEIPKSNNLAALVRLLRRKIEIKGSAP-LIHTVYGKGYRF 223


>gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 226

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S        + G    E   F   + ++LD+ L    G E+
Sbjct: 2   IYCVEDDSNIRELVVYTLESTGMKARGFEDGRKFTEALAFETPELVLLDIMLPGEDGIEI 61

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ LR      + PV +++   S  DKV GL +GADDYI+KPF   ELV+RI+A++RR+ 
Sbjct: 62  LKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLRRTT 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   ++    G+L ++++   V+V G  + LT KE++++E L   ++  LT++  L  ++
Sbjct: 122 REKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLEEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +DV +  LR+KL +A      IETV G GY +  + ++
Sbjct: 182 GYDFSGETRTVDVHVRTLRQKLGDAG---ELIETVRGVGYRIGGDNEE 226


>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+K +   ++  L  E + V +   GE  ++       D IILD+ L  + GFE
Sbjct: 5   HILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V   L+  + +   P+  LS  S +EDKV+GL  GA DY++KPF+  EL +R++A+ RR 
Sbjct: 65  VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRI 124

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                H +  +  G L+++L    V +    I LT KE+ ++  L  +     +++  L 
Sbjct: 125 NQNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTNKEFNLLAYLIDKLGKVCSRDELLA 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++   +   ++ +DV I  LRKK +        I+TV G GY L +N
Sbjct: 185 NVWGYENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKN 232


>gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus
           GG]
          Length = 266

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++  +  ++L L+ E + +     G+  ++  K   FD ++LD+ L +  GF 
Sbjct: 36  KILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEKNGFN 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ LR  K+ TPV I++     +D+V GL  GADDY+ KPF+   L ARI+A +RR+  
Sbjct: 96  VLKELRQTKM-TPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  + H QS +   DL ++   +TV     R++LT KEY++++LL +      +K+
Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                ++      +   ++V I +LR K+ +    + YI TVWG GYVL    +
Sbjct: 215 AIYEKVWGESYIGDENTVNVCIKRLRDKIQDV--NQRYIRTVWGIGYVLEAGVE 266


>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ RIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
 gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK   +NV       D  +  +      I+LD  L D  G  +
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  +     P+ +L+  S  EDK+ GL +GADDY++KPF+  EL ARI A++RR +
Sbjct: 68  LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H+Q+L+  G++S++  + +V +   +I +   E+++++      +   ++   L+ ++
Sbjct: 128 PEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L +A   ++ I+TV   GY+L
Sbjct: 188 GDHVVIEERTVDVHVLRLRKALKDA---EHLIKTVRSVGYML 226


>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
 gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
          Length = 245

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 241


>gi|284041764|ref|YP_003392104.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283945985|gb|ADB48729.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 226

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L  +I   L  +     V + GED + +     +DAI+LD+ L  I GF
Sbjct: 1   MRVLVIEDEPKLRAAIRRGLTEDGLVCDVAERGEDALWMAGSSAYDAIVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR   +  PV +L+   ++ED+V GL +GADDY++KPF+  EL AR+RA+ RR  
Sbjct: 61  ETCRRLRADGVWAPVLMLTARDAVEDRVAGLDTGADDYVTKPFSLAELSARLRALARRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL+++   + V      I L+ +EY ++E    R    L + + L+  + 
Sbjct: 121 VQRPAVLAAGDLTLDPATRRVARGEVEIELSAREYALLEAFMRRPGEVLERHVLLDLAWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    ++DV++  LR+++ +   G   IET+ G GY LR + 
Sbjct: 181 RDYENRSNVVDVYVRYLRERV-DRPFGAEAIETLRGVGYRLRADG 224


>gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 238

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   + L L+ E F++     G+  +   + ++ D  I+D+ + +I G+E+
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R      P+ ILS  +   DK+ GL  GADD+ISKPF+  E++ARI+A +RR+   
Sbjct: 65  IKIVRKE-YKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S     DL ++  +  ++ +GH I L+  EY++++L         TK+   
Sbjct: 124 NTDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++      +   I V I +LR+K+ +      Y++T+ G GY   +  +
Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234


>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
 gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
           proteobacterium KB13]
          Length = 237

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++I+DD+ +   I+  L+ + F+    + G+D  ++ +    D IILDL L D  G +
Sbjct: 4   KIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LRV KI  P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI +I RR   
Sbjct: 64  ICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHEM 123

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        I   +   N   +T++     I LT  E+ ++++     N  L+++ 
Sbjct: 124 ELSEKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLSRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +        +   + IDV I ++RK +        Y++T WG GYV  
Sbjct: 184 IMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232


>gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
          Length = 270

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
 gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L  E + +     G + +E+ +  E   ++LD+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEVHLLLLDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K S P+ ILS  S   DK+ GL  GADDY++KPF+  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-KNSIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRRYTQL 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++     +   G L +N D K V V G  + LT  EY ++ LL   +    +     
Sbjct: 123 GGTAQNENDKIYSVGGLRINDDLKEVTVDGELVRLTPIEYNILLLLMKNQGRVFSINQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 EMIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|118594517|ref|ZP_01551864.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
 gi|118440295|gb|EAV46922.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
          Length = 238

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L++DD  +       L  +  +V     G +  EL   Y  + I+LDL + +  G E
Sbjct: 9   QIALVDDDPKIRELTAKYLSDQGLSVVTASNGAELDELRINYNINLIVLDLMMPEESGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + LRV KI TP+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI AI+RR   
Sbjct: 69  VCQRLRVNKIDTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARINAIIRRQTA 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R   +++I  G+   +L  +++      I +T  EY ++ +        L+++  +  
Sbjct: 129 PVRQSDKTIIKFGNFVFDLTNRSLFKGEKEIQITAGEYDLLRVFVEHPKQPLSRDQIMQL 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + IDV I +LR+ +        +++T WG GY+   +++
Sbjct: 189 SKGKELDVFDRSIDVQISRLRRLIEADPNKPKFLQTKWGFGYIFVPDSE 237


>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
 gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
           CNPT3]
          Length = 242

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D + +   ++  LK   + V V   G++  +  K  + D IILDL L    G  
Sbjct: 5   HLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLPGEDGLT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +LS M    DK+ GL+ GADDYISKPFN  EL+ARI+A++RRS  
Sbjct: 65  LCRNLRAQS-NIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRRSTQ 123

Query: 122 -----HAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++     +++++ + +   QG  I L+  E+ ++++        L+++  L
Sbjct: 124 ITKQVTDSQILHFERWTLDINRRQLLNHQGINIILSSAEFSLLKVFLEHPQQVLSRDQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL---RENAK 226
           +       +   + ID  + +LRKKL         I+T+WG GY L    ENAK
Sbjct: 184 DLAKGREGDVYDRAIDTQVSRLRKKLEKDPKQPCLIKTIWGGGYQLACEVENAK 237


>gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. W3110]
 gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR
 gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655]
 gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. MG1655]
 gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K12 substr. W3110]
 gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli str. K-12 substr. DH10B]
 gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BW2952]
 gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1]
 gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 222

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDSVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|114330053|ref|YP_746275.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
 gi|114307067|gb|ABI58310.1| two component heavy metal response transcriptional regulator,
           winged helix family protein [Nitrosomonas eutropha C91]
          Length = 227

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L    ++D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEIKTGEYVRQGLVESGFIVDLARTGLDGHHLALTEDYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR AK +TPV  L+   S+ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALREAKSATPVLFLTARDSVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGA 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +   DL +++  +    Q  RI+LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 APALSDQLQVADLVLDIPRRRARRQEVRINLTNKEFALLELLVRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ + A     I TV G GY+L
Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKI-DDAFEPKLIHTVRGMGYML 221


>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
 gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
 gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
 gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
           FVEC1412]
 gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
 gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
           boydii ATCC 9905]
 gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
 gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
 gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 301]
 gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a
           str. 2457T]
 gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5
           str. 8401]
 gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 301]
 gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella
           flexneri 2a str. 2457T]
 gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5
           str. 8401]
 gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri
           2002017]
 gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str.
           2457T]
 gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671]
 gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71]
 gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71]
 gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6]
 gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218]
 gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL+ +D+K +A  + L L+   F V   D G + +   +      IILDL L D
Sbjct: 1   MKRHHTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           IPG EV  A+R    + P+ +L+     ED++RGLQ GADDY++KPFN  E+VAR++AI+
Sbjct: 61  IPGEEVCMAVRARS-AVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAIL 119

Query: 117 RRSRGHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RR+              GDL ++  ++ V   G    LT  EY+++ +LS       ++E
Sbjct: 120 RRTMLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSRE 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  ++      +V+ ID  +  LR K+ +      YI+TV+G GY  
Sbjct: 180 ELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228


>gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571]
 gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10]
 gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463]
          Length = 238

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLEDALNQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   +L++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASRVTVAKQKIVKFKNLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGIGYMVRDEDDDQ 237


>gi|167031851|ref|YP_001667082.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166858339|gb|ABY96746.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 224

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 128/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    +   DL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 SHEPLQVQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V I +LR KL +       + T+ G GYVL   A
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFDNKLLHTIRGMGYVLENRA 223


>gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 236

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E ++V +   G + +E+ K     +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKANPSSYDIVTLDLNLPKKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                     G         L ++ D + V      +  LT KE+ ++  ++ +     +
Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 128/227 (56%), Gaps = 10/227 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++
Sbjct: 1   MKNYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV + +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++R
Sbjct: 61  NGFEVSKMIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLR 119

Query: 118 RSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RS   +  + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  + 
Sbjct: 120 RSYDKNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++      E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 KVWGYDYFGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 221


>gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 227

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSETHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 230

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ LK+E   V     G + +E+    +   IILD+ +  + G   
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVMMPKLDGISA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  K + P+ ILS  +   DK+ GLQ GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  TYKIREKK-NIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTF 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I    L ++ +AK V V G  + +T  EY+++ELL        +       
Sbjct: 125 GTFEGVKKVIDLNGLMLDKEAKEVSVNGEPVKMTPIEYKIVELLMTNAGRVFSINEIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++         + V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 VWNEPYYNAENTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230


>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+    + +   L+   ++  +   G DG+       FD I+LD+ +  + G+
Sbjct: 1   MNILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR     TPV  L+    I D+++GL+ GADDY+ KPF+  ELVAR+R + RR  
Sbjct: 61  EVLRRLRKE-TDTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +   DL +++  + V   G RI LT KE+ ++ L +  ++  L++ +  + ++D
Sbjct: 120 IREEEQLHIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  ++DV + +LR K+ +       I +V G GY  
Sbjct: 180 MNFDSDTNVVDVAVRRLRLKV-DDPFQLKLIHSVRGIGYRF 219


>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
 gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DD  +A  +E+ LK+E +   +   G++ +       +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ +LS  S   DK++GL +GADDY++KPFN  E++AR+R+++RR+
Sbjct: 61  LEVVKVVRKDS-RIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRA 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      +  G L +N D+  V    G  ++LT  E+ ++ LL+   N   + +  
Sbjct: 120 ENSVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G   I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIE 227


>gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1]
 gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1]
          Length = 240

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD   A  +   L      V     G++G+ +     +D +++D  L  + G  
Sbjct: 17  RILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRMLPKLDGLT 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +LR LR A I TP   L+ M SI+D+V+GL+SG DDY+ KPF   EL ARI ++ RR   
Sbjct: 77  LLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPPL 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q++    DL ++L  +TV   G  + L   E++++E L       +T+ M L H+++
Sbjct: 137 QDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVWN 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P+  I++  I +LR KL +       I TV G GY +
Sbjct: 197 FHFDPKTNIVETHISRLRAKL-DRGFTPELIHTVRGVGYKI 236


>gi|94314250|ref|YP_587459.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
 gi|93358102|gb|ABF12190.1| transcriptional regulator two components regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++DD+  A  +   L+ E ++V      +        Y F  +ILD  L    G 
Sbjct: 1   MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVA-AAHNCYAFSLLILDWMLPGKSGV 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR   + TP+ +L+   +I D++ GL +GADDY++KPF  EEL+A +RA++RR  
Sbjct: 60  EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I   DL ++   + V   G R+ LT KEY ++ LL       +++     H++ 
Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   +IDV +  LR+KL +  G    I+TV G+G+ +  + 
Sbjct: 180 ADLIAIDNLIDVHMKNLRRKL-DPPGMAALIQTVRGQGFRISPSG 223


>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 235

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + L+L+S+ F  +  + G+  +E+ +      IILDL + DI G EV
Sbjct: 8   VLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLMMPDISGEEV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R  K   P+ +L+      D V GL  GADDY+ KPF  +EL ARI A++RR+   
Sbjct: 68  CRAIR-KKSRVPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRRTESD 126

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++    GDL  + +   V  +G  + LT  E +++ +L        T+E  +  
Sbjct: 127 LVPLVKRNSWRNGDLVTDFEKNEVRKKGVSLTLTPSELKILSVLIKYPGKVFTREELIEA 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             D       + ID  I  +RKK+ +      Y+ T+ G GY    + +
Sbjct: 187 ALDKGFAGYDRAIDSHIKNIRKKVEDDPKNPVYVRTIPGLGYKFGGDGE 235


>gi|91783509|ref|YP_558715.1| osmolarity response regulator [Burkholderia xenovorans LB400]
 gi|170692385|ref|ZP_02883548.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187923869|ref|YP_001895511.1| osmolarity response regulator [Burkholderia phytofirmans PsJN]
 gi|209520706|ref|ZP_03269456.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295676509|ref|YP_003605033.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|296157818|ref|ZP_06840652.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307729628|ref|YP_003906852.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|323526056|ref|YP_004228209.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|91687463|gb|ABE30663.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
 gi|170142815|gb|EDT10980.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|187715063|gb|ACD16287.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|209498868|gb|EDZ98973.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|295436352|gb|ADG15522.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295892064|gb|EFG71848.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307584163|gb|ADN57561.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
 gi|323383058|gb|ADX55149.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 244

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ +
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQSPSELPGAPSETTEVFEFGEFA 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKAGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 236

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +   ++  GED +E      FD ++LDL L  I GF+V
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLPGIDGFDV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  +     P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q ++    L V++    V++ G  I LT  E++++  L  RK    +++M L+ 
Sbjct: 126 RQSAQHQEVLSAAGLDVDIVRHEVKLDGKEIVLTLMEFKLLVALLKRKGQAQSRDMLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++       + ID  I +LR+KL         I+TV G GY   E  +
Sbjct: 186 VWEVDRFINTRTIDTHITRLREKLGVTGS---MIKTVRGLGYKFEEATE 231


>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
 gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
           griseoaurantiacus M045]
          Length = 236

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L    F V V     + +E       D ++LD+ L    GFE
Sbjct: 8   RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   +  PV  L+   ++ED+VRGL+ G DDY++KPF+  E+ AR++A++RR+RG
Sbjct: 68  ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRRARG 127

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A      + +   DL ++     V   G  + L+  EY+++  L   +   L++   L 
Sbjct: 128 GAPAPEETTGLRCADLEIDDPRHEVRRAGEPVDLSPTEYRLLHYLLSHQGQVLSRAQILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +  +++ F+  LR+K+    G +  + TV G GY LRE A
Sbjct: 188 AVWQYDFGGDTVVVERFVSNLRRKI--DQGREPLLHTVRGVGYTLREQA 234


>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
 gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
          Length = 234

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  +++ L+ E F       G    E      FD I+LD+ L  + G E
Sbjct: 12  RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+AR++  +RR   
Sbjct: 72  ICRRVRAV-TNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDI 130

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  +
Sbjct: 131 STEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEV 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 191 WGFDYTGETNVVDVYIRYLRAKL-DDRFNKKYIYTVRGVGYVVRD 234


>gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 243

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA  +   L++  +  +    GE+     + +    I+LDL L    G  +
Sbjct: 16  VLIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLMLPGRDGLTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RA+R    + P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ ++RR R  
Sbjct: 76  CRAIRGFS-NVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134

Query: 123 AQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + L       L ++ +       G  + LT  E+++++ LS       ++E  L+HLYD
Sbjct: 135 HEPLPNDVLPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                  + ID  I  LR+KL       ++I TV+G GY     A  E
Sbjct: 195 DYRVVTDRTIDSHIKNLRRKLEVFDRETSFIRTVYGIGYRWEAAASQE 242


>gi|237799359|ref|ZP_04587820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237805509|ref|ZP_04592213.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806273|ref|ZP_04592977.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022215|gb|EGI02272.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331026616|gb|EGI06671.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027387|gb|EGI07442.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   +++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKI-DLPYPVKLIHTVRGIGYV 218


>gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 232

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL++ED+  +   + + LK E + +     G + IE      +    +LD+ L DI G 
Sbjct: 4   KILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDISGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R       + +L+  +  +DK+ G  SGADDYI KPF+ +EL+ R+ A++RR  
Sbjct: 64  EVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLRRVA 123

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S IV+    +++D + +   G  I LT  E+ +++ L      +L+++  L+
Sbjct: 124 KDDSSVKSSEIVSPPFILDIDKRKLFKNGKEIELTPTEFSIVKYLISNAKQSLSRDQILD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + KI+DV I ++R K+ +      YI+T+WG GY  R+ 
Sbjct: 184 EVWGTNYLYDFKIVDVNIRRIRNKIEDDPSKPKYIQTIWGYGYCFRKE 231


>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
 gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
 gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
 gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
 gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
          Length = 260

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 65  SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  + +V  QG  I L  +E++++E L       +T+ M L +++
Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+         + T+ G GY++++ 
Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-DPPLLRTIRGAGYMIKDE 228


>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
 gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
          Length = 223

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2]
 gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719]
 gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192]
 gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 229

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  + G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALRERR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H   S +   DLS++L ++ V     R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +++V I +LR KL +       + T+ G GYVL   A  E+
Sbjct: 180 DINFDTDTNVVEVAIKRLRAKL-DGPFENKLLHTIRGMGYVLENRALAES 228


>gi|330957179|gb|EGH57439.1| osmolarity response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELKRGDEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 241

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  L   +   L +  +  ++   G   +        D I+LDL L    G  
Sbjct: 16  HVLIVEDEPKLGQLLIDYLTAGGYQPHLLADGNAVLPYVHQTPPDLILLDLMLPGTDGLT 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 76  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCVR 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S      L ++ +      Q   + LT  E+++++ L+ +  T L++E  LNHLYD 
Sbjct: 135 RTESNAEPM-LIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSREQLLNHLYDD 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 + +D  I  LR+KL     G+ +I +V+G GY     A
Sbjct: 194 YRVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGYRWEGTA 237


>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
 gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
           35185]
 gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
           [Selenomonas sputigena ATCC 35185]
          Length = 254

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED++ +A  +++ L+ E F     + G    E     ++D ++LD+ L D+ G EV
Sbjct: 31  IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+    +EDKV GL  GADDYI+KPF  +EL+AR+RA +R  + +
Sbjct: 91  CRRVREIS-DVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKAN 149

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++   DL +      V V+G  + LT KEY ++E +   K   LT++  L  
Sbjct: 150 EAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQE 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +  ++DV+I  LR K+      K YI TV G GY ++
Sbjct: 210 VWGYDYVGDTNVVDVYIRYLRAKIDERFDDK-YIYTVRGVGYAIK 253


>gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 225

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDD  +A  +   L+     V     G +G+       FD I+LD  L  + G 
Sbjct: 1   MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R    +TPV ILS +  +++++RGL++G DDY+ KPF   ELVAR+ A+ RR  
Sbjct: 61  KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ + + +GDL+++L  +TV   G RI LT +E++++E L       +T+ M L H++
Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  IID  + +LR+KL         IETV G GYV+R +
Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTP-LIETVRGTGYVVRPS 224


>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 233

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  +    K E+F V  T  GE+ + L +    D ++LD  +  + G E
Sbjct: 5   RMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESLSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   P+ +L+     ED+VRGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRV 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   A   +   D+ ++     V   G  I L   E+++++          ++E  L+ +
Sbjct: 125 RPALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    + E++ +DV I +LRK ++     ++ I TV   GY L  + 
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALDTDG 231


>gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 242

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 6   RILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 65

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 66  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 125

Query: 120 RGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
               +            I T  L ++ + + V      +  LT KE+ ++  ++ +    
Sbjct: 126 MMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQV 185

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 186 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 239


>gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
 gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina
           pelagi HTCC2506]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+ ++ED++AL   +   L++E + V V   G++     K    D ++LD  L  + G E
Sbjct: 4   RVTVVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWMLPGLSGVE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   PV +L+      ++V+GL  GADDY+ KPF+  E  AR++A++RR+
Sbjct: 64  ICRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S++  GDL ++  A  V   G  + L   E++++E L        T+E  L+ +
Sbjct: 124 SPEKVASVLSAGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N A  ++ I TV G GY L E 
Sbjct: 184 WGRDIYVDERTVDVHVGRLRKAI-NRARDRDPIRTVRGAGYALDEQ 228


>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
           CV56]
          Length = 228

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
            +L++ED+ +L+  ++  L  E++ V     G   +E+ +  +   D ++LD  +  + G
Sbjct: 4   HVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR ++  +  TP+  L+    I DKV GL +GADDYI+KPF  EEL+AR+R I R+ 
Sbjct: 64  LTVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +     L V+L A T EV G  ++LT +E+ ++      +   +++   L+ ++
Sbjct: 124 SNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +   +D ++  LR K+ +    K+ IETV G GY L
Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGIGYRL 224


>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 246

 Score =  259 bits (662), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R      PV IL+     ED+VRGL+ GADDY+ KPF++ ELV+RIRA++RR    
Sbjct: 69  LRRIRSFS-QVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHYTQ 127

Query: 123 A---QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D LS++   + V V G R++L   EY+++  L       LT EM L+ +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + ++I  LR+K+        YI T  G GY   +
Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPKYILTERGVGYRFVD 232


>gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 223

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G +       +EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGLPKLHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    S PV IL+   S+E +V+GL  GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S+I  G L+ +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEK 220


>gi|75908138|ref|YP_322434.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701863|gb|ABA21539.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 238

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 56/224 (25%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + I   L  + + +     G+  + L + +    +ILD  L D  G+ 
Sbjct: 10  KILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNLPDTSGYS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++ +  V IL+G +   DK++ L +GADD+I+KPF+  E+  R++A++RR R 
Sbjct: 69  LCQEM-QSRNNVLVMILTGRTEEADKIKILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   ++   L++N + + V +    ++LT  E+ ++  L+       ++   +  +
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + +++DV I +LRKKL +      +I+TV G GY   
Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Herminiimonas arsenicoxydans]
          Length = 229

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   LK   +NV       +  +  +      I+LD  L D  G  +
Sbjct: 8   ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  +     P+ +L+  S  EDK+ GL +GADDY++KPF+  EL ARI A++RR +
Sbjct: 68  LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             HAQ+L+  G +S++  + +V +   +I +   E+++++      +   ++   L+ ++
Sbjct: 128 PEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E + +DV + +LRK L  A   ++ I+TV   GY+L E
Sbjct: 188 GDHVVIEERTVDVHVLRLRKALKEA---EHLIKTVRSVGYMLSE 228


>gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 248

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGESGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248


>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
 gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + ++     E D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAE-EPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L +    + V V G  I LT +E+ + +L +        ++  L 
Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + +D+ + +LRKKL  +      I+T++G GY L 
Sbjct: 180 KVWGFEYTGNTRAVDIMVQRLRKKLGASGDS---IKTIYGVGYKLE 222


>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
 gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9301]
          Length = 260

 Score =  259 bits (662), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T++
Sbjct: 121 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++   L+ + F +     G+      +  ++  ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR    + PV I +   ++ D+V GL +GADDY+ KPF+ EEL AR+RA+ RR  
Sbjct: 61  AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+SL+   ++ +N     V V G  ++L+ +E+ +++    R    L++      LY 
Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D  E   ++V I  LRKK+ +      +I+ V G GY+
Sbjct: 181 WDDSIESNAVEVHIHALRKKVGSD-----FIKNVRGVGYL 215


>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 230

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  ++++ L ++ + V+    G++ +E+ K  +   +++D+ + ++ G   
Sbjct: 4   ILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIMMPEMDGIAA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  +R    + PV +L+  S   DKV GL  GADDYI+KPFN  E+ AR+++ +RR    
Sbjct: 64  MVKIRETS-NVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRRYMQL 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++  G + ++  +K V + G +I LT  EY +++LL        +       
Sbjct: 123 GGGAIRKDVLSIGGIELDDRSKEVSLDGEKISLTRTEYDILKLLMEHPGEVFSPNQIYEQ 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++          + V I  LR+K+        Y++ VWGRGY + 
Sbjct: 183 VWQDNPYGTENTVAVHIRHLREKVEYNPAEPRYLKVVWGRGYKME 227


>gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23]
 gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23]
 gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
 gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W]
 gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator
           [Burkholderia multivorans ATCC 17616]
 gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia multivorans ATCC
           17616]
 gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+ G+ L     FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVMLPELDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLKRLRAEK-QTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +++  D+ ++L  + V    +RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RSIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ + A  K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKV-DNAYDKKLIHTIRGMGYVLEDRS 223


>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
 gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
           F0309]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G + +        D ++LDLGL D+ G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATGAEAL--ADVRGVDLVVLDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  +   D+ +++ A    V    + LT KE+ ++ +L     + + ++  +  ++  
Sbjct: 122 PAEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 K +D+ +  LR+KL + A   +YI TV G G+   ENA+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225


>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L+   + V +   G DG+ +     +D ++LD+ L  I G+
Sbjct: 1   MTILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++RALR  +   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  EIMRALRTRR-DLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +    DL +++  + V  +G  I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 IRESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +    K  I TV   GY   + +
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DHPFEKKLIHTVRSIGYTFGDGS 223


>gi|148654299|ref|YP_001274504.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148566409|gb|ABQ88554.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ + + +   LK++ F V+    GE  ++  +    D ++LDL L  I G E+
Sbjct: 5   ILVVEDEEPILNLVVAYLKADGFVVHTARDGESALQQAQIVRPDLVVLDLLLPGIDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R L+       V +L+  +   DKV GL  GADDY++KPF+  ELVAR++AI+RR R  
Sbjct: 65  CRRLQHDGGPY-VLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRHT 123

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L+   DL +++  + V+ +G  + LT +E+ ++  L+       T+E  L  
Sbjct: 124 GAAPAENTLLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLER 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +   +++DV I  LR+KL +       I+TV G GY  
Sbjct: 184 VWGHDFDGVDRVVDVHISLLRRKLEDDPAEPTLIQTVRGVGYKF 227


>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 719

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/208 (30%), Positives = 116/208 (55%), Gaps = 5/208 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD  +A  + L L+ E + +     G + ++  +   +DA+ILDL L ++ G
Sbjct: 1   MKQILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E+ R +R      PV I+S  SS  D++ GL++GADDY++KPF+ +EL+ARI+A+ RR 
Sbjct: 61  LEICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120

Query: 120 RGHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   Q+     I    L+++  A++V + G  + LT +E++++   +       ++   L
Sbjct: 121 QAMGQAQSAGNIQAHGLTIDPLARSVLLHGQIVDLTPREFELLYFFARHPGEVFSRLALL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSN 203
             ++  + E     ++  I +LR K+  
Sbjct: 181 EQVWGYQHEGYEHTVNTHINRLRIKIEK 208


>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
           [Thiomonas sp. 3As]
          Length = 244

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A  + + L+            E+ + + +    D +++D  L  + G  +
Sbjct: 7   ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            RALR      + P+ +L+  S   DKV+GL +GADDYI+KPF+ +EL+ARIRA++RR  
Sbjct: 67  ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  G LSV+  ++    +        I L   E++++  L        ++   
Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ ++      E + +DV I +LR+ LS        +ETV G GY     ++
Sbjct: 187 LDKVWGDHVFIEERTVDVHIKRLREALSPV-QCAEMVETVRGAGYRFTAQSR 237


>gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 258

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  S+   L+ E + V     G       +  ++D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDVMIGESVLDALRGEGYAVDWVRDGAVADSALRTEQYDLVLLDLGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR  + +TPV I +   ++  ++ GL +GADDY+ KP++ +EL ARIRA++RR+ 
Sbjct: 61  AVLKALRTRRETTPVLIATARDAVSARIAGLDAGADDYVLKPYDLDELSARIRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +   G +S+N       + G  + L+ +E+ ++E L  R    L++      LY 
Sbjct: 121 GRAEPVFSYGRISLNPATHEALLDGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL-RENAKDETC 230
            +DE     ++V++  LRKKL     G + I  + G GY++ +E A     
Sbjct: 181 WKDEISSNAVEVYVHSLRKKL-----GPDLIRNIRGMGYMIAKEPAPASPS 226


>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
 gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
           14469]
          Length = 248

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 83/229 (36%), Positives = 120/229 (52%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  L  ++   LK E +       G  G+EL     +D I+LDL L  + G+
Sbjct: 20  MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  K  + V ILS  S +EDK+ GL  GADDY++KPF  +EL ARIRA+ RR  
Sbjct: 80  QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +V  DL +N+   T+      H + L  KE+Q++E L       +++      +
Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +    E E   +DV+I  LRKKL +       I  V G GY L+E   D
Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVE-IRAVRGIGYTLQEAGAD 247


>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
 gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
           16841]
          Length = 227

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  + + + L L++EN++V   + G+  ++L +  +    ILD+ +  I G+ 
Sbjct: 4   KILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMPKIDGYH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R    + PV ILS   +  +K+ GL  GADDY++KPFN  E VAR+ + +RR   
Sbjct: 64  VLQQIRKES-NIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRRFYS 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++   +  +   DL +N DA T++     I LT  EY+++ELL        TK+    
Sbjct: 123 LGTKVVQEGNLAVRDLVLNQDACTLKKGDKIIQLTSVEYRIMELLMKHPGKVFTKQQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           H +          I V I KLR KL +      YI+T+ G GY L +
Sbjct: 183 HGWGEDYIVADNNIMVCISKLRAKLDDNPSA--YIQTIRGLGYRLEK 227


>gi|56750974|ref|YP_171675.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81299367|ref|YP_399575.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|56685933|dbj|BAD79155.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|81168248|gb|ABB56588.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 237

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  + + V     G   +   + +  D +ILD+ L D  G++
Sbjct: 5   KILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDTNGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +   +    V +L+      D + G   GADDYI+KPF+   + ARI AI+RR R 
Sbjct: 65  LC-EIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q  +    L ++   + V   G  I LT  E+ ++  L+   +    +   +  +
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNELIQEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     + +++DV I ++RKKL         I+TV G GY      
Sbjct: 184 WEYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFESTG 230


>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 230

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +EL L ++ F+V      +D ++L +   FD +ILD+ L D+ GF 
Sbjct: 4   KIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLEDMDGFS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL  GADDYI+KPFN  E++AR++  +RRS+ 
Sbjct: 64  VCKKIREKHY-FPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 122

Query: 122 HAQSLIVTGD-------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + ++  +  D       L ++  +    +   +I LT  E+++I  L   +   ++ E  
Sbjct: 123 YNKTEKIKDDETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++  +       +   I ++R K++++     +I+TVWG GY
Sbjct: 183 FENIWKEKYLDNNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGY 227


>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
 gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + LK+E +       G++ +       E   +ILD+ +  + G
Sbjct: 1   MKILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++ +R      P+ ++S  +S  DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IEVIKEVRKDS-EIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G  I LT  E+ ++ +L+   N   + +  
Sbjct: 120 QKEVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 263

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           RIL++EDD     S+   L +E F V     G         +      D +ILD  L  I
Sbjct: 5   RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  +LR LR      PV +L+   +I+D+V+GL++GADDY++KPF   EL+AR+RA++R
Sbjct: 65  DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124

Query: 118 RSRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R     +       DL++NL+ + V   G  I LT +E+ ++  LSL +   ++++    
Sbjct: 125 RFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAR 184

Query: 177 HLYDGRD--EPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
            ++   +   P   +IDV I +LR+K+  A  G +  + T+ G GY+LR
Sbjct: 185 EIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGYMLR 233


>gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5]
 gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5]
          Length = 235

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD+ LA  I   L+S    V V   GE G+     + +D I+LDLGL    G 
Sbjct: 7   IHILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGLPGRDGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + LR      P+ I +      DKV GL+ GADDYI+KP++  EL+ARIRA  RR R
Sbjct: 67  SVCQQLR-GHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMR 125

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G        +  G L +  +A    +   R+ LT  E+ ++  L+      L++E  +  
Sbjct: 126 GQVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMEL 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                D+   + +DV I +LR+KL + +     I TV G GY      +
Sbjct: 186 ARGSSDDAFDRSVDVHISRLRQKLGDNSRPVKMIRTVRGAGYQFVAGGR 234


>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
 gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
          Length = 252

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 61/234 (26%), Positives = 118/234 (50%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ + +++++ L  E++ +Y    G + +E+      D ++LD+ +  + G E
Sbjct: 19  KILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVMMPVMDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  +R    + P+ +L+      DK+ GL  GADDYI+KPFN  E++AR+++ +RR   
Sbjct: 79  AMMHIRKT-TTIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRRYTQ 137

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q        +  G L +N + K+V + G ++  T  E+ +++ L    N   + +   
Sbjct: 138 FNQGYVETSHILKVGGLELNDETKSVSMDGKQVRCTPTEFDILKFLMEHPNRVFSPKHIY 197

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            H++          + V I  LR+KL        Y + VWG+GY +    K E+
Sbjct: 198 EHVWKDHSYGAEGTVAVHIRHLREKLEINPSEPRYFKVVWGQGYKIEGELKHES 251


>gi|257439558|ref|ZP_05615313.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
 gi|257198005|gb|EEU96289.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Faecalibacterium prausnitzii A2-165]
          Length = 232

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           ++L+I+DDK L   ++  ++ E  +      G +G+ L    +  +  IILD+ L DI G
Sbjct: 3   KVLIIDDDKELCALMKKCIEQEKLSAVTVYNGIEGVRLIDENKDSYSLIILDVMLPDIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F++L+ +R    + PV +L+  SS EDKV GL+ GADDY++KPF   EL+AR+ +++RR 
Sbjct: 63  FQILQKIRDTS-NIPVLMLTAKSSEEDKVFGLRLGADDYLTKPFGINELLARVNSLIRRY 121

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I   D+ ++   +TV V+   + LTGKE+ ++  L+  K    TK+  
Sbjct: 122 TTLNPFTADIDSISLKDMVIDKLNRTVTVKDIPVLLTGKEFDLLLFLASNKGRVFTKKQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            + +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 182 YSQVWEEEYAFDDSNIMSFISKLRKKIEPDPDHPFYILTVRGVGYRFNKEA 232


>gi|255281374|ref|ZP_05345929.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
 gi|255267862|gb|EET61067.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
           14469]
          Length = 237

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ ++   E  L++  F+  +   G +   L     FD I+LDL L    G++
Sbjct: 6   RVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGYD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R   +  P+ +++  +   DK+RGL  GADDYI+KPF+  ELVAR+ A +R+   
Sbjct: 66  ICREIREQ-VDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDR 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          I   DL + +++  V      I    +E+++++ L++  N   ++
Sbjct: 125 MMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E     ++      +   + V I ++R+K+ + +     +ETVWG GY   ++
Sbjct: 185 EQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237


>gi|163744528|ref|ZP_02151888.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
 gi|161381346|gb|EDQ05755.1| putative two-component response regulator transcriptional
           regulatory protein [Oceanibulbus indolifex HEL-45]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD   A  I   LK+          G+ G       +FD I++D  L  + G 
Sbjct: 1   MRVLVVEDDGETAEYICTSLKALGHVTKHASDGKQGFLDALDNDFDVIVVDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R A + TP+  LS +  + D+V GL++GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKSVRGANVDTPILFLSALGGLNDRVNGLEAGADDYLVKPFAFSELSARLTALARRPP 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +   DL ++L   TV   G  I +  +E++++  L       +T+ M L  ++
Sbjct: 121 MQAEETRLQVADLEIDLIRHTVCRSGQEIAVQPREFRLLSYLMKNAERVVTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+         I TV G GY L
Sbjct: 181 DFHFDPNTNVVETHISRLRNKIDKPFDQP-LIHTVRGAGYSL 221


>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 232

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L+ E F V+    G + +E+ +       I+D+ +  + G  +
Sbjct: 4   ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIMMPRMDGIRL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + PV  LS  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 64  VKEVRRFS-TIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYTTL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     ++   G L ++ ++K   V G  I LT  EY ++  L   K    + E    H
Sbjct: 123 GSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIYEH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +++          I V I  +R+K+        +++ VWG GY + +  
Sbjct: 183 IWNESVGGRSDNTIAVHIRHIREKIEINPKDPKFLKVVWGVGYKIEDEV 231


>gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 245

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
 gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
           DSM 5476]
          Length = 251

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD ++   + + LK+  +       G +G+ L      D I+LDLGL DI G  
Sbjct: 28  RILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGLPDIDGLT 87

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R +    P+ I+S      +KV  L  GADDYI+KPF+  EL+ARIR  +R+ + 
Sbjct: 88  VLEQVRQSS-DIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALRKHQP 146

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +      L ++ D + V V G+ +HLT  EY+++ LL       LT       ++
Sbjct: 147 KISKNNQFTLDGLRIDFDKRKVTVDGNEVHLTPIEYKLLVLLVENAGKVLTHSFINKEIW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +  + + + VF+  +R+K+        YI T  G GY   + 
Sbjct: 207 GYTNTEDSQSLRVFMANIRRKIEKDTAKPRYILTEVGVGYRFVDE 251


>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 17/238 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  + + +E  L+ E +        E+G ++ +    D  +LD+ L  + GFE+
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      P+ ++S   S  DK+ GL+ G+DDY+ KPF+  ELVARI+  + R    
Sbjct: 67  CRRIRAE-AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWYKF 125

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A   +  G L + L+ + V   G  + +T KE++M+ + +   N   T+
Sbjct: 126 NRAENVPRLAAASPELSNGRLQLQLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAFTR 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +  L  ++        + +D  I +LRKK+         IE +WG GY +R + ++ +
Sbjct: 186 DELLTSVWGDDYFGSDRAVDHLIKRLRKKVEQLP-----IEAIWGHGYRMRTDGEESS 238


>gi|77460884|ref|YP_350391.1| two component heavy metal response transcriptional regulator
           [Pseudomonas fluorescens Pf0-1]
 gi|77384887|gb|ABA76400.1| tw-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V     G +G+ L    ++  I+LD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLHRGLTEQGYTVDRARDGVEGLHLALESDYAVIVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIRGLRDGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    +   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQVSIADLWIDLISRKATRAGTRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +    +  + T+ G GYVL 
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFDEKLLHTIRGMGYVLE 220


>gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25]
 gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25]
          Length = 219

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+S  +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIIETLESTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L     +V +   G   I      + D ++LD+ L    G  
Sbjct: 11  RILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     +P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 71  VCREVRP-HYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G+L ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 130 APSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ +       I+TV  +GY+  +  
Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237


>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 226

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++   + L L+     V     GE+G+ L   +  + ++LDL L  I G +
Sbjct: 3   RVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGINGVQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      D V GL++GADDYI KP   E + ARI+A++RR +G
Sbjct: 63  VCRRIRETS-QVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKG 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +   G+L+++    TV   G R+ L   E +++  LS       +++  L +++
Sbjct: 122 PGGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     + +++D  + +LR K+ +  G   YI+TV G GY  
Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGYRF 223


>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
 gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
 gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
 gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
 gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
          Length = 231

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F V     G   +   +    D  +LD+ L DI GF+
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQQIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + QS             L + +++    + G  + LT  E++++  L   + + +  E  
Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL+        I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|148239881|ref|YP_001225268.1| two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
 gi|1055347|gb|AAB38749.1| response regulator PhoB [Synechococcus sp. WH 7803]
 gi|147848420|emb|CAK23971.1| Two-component system response regulator, phosphate sensing PhoB
           [Synechococcus sp. WH 7803]
          Length = 234

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFD---AIILDLGLTDIP 58
           ++L++EDD ++  ++E  L++E F V     G D + L      +    ++LDL L  + 
Sbjct: 5   KLLVVEDDDSIRETVEEALRAEGFEVKSCGNGADAMALLSAPNTEGVDLLVLDLMLPGLG 64

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R LR     TPV ++S   S  D+V GL+ GADDY+ KPF   ELVAR RA++RR
Sbjct: 65  GLDLCRQLRKLNNHTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRR 124

Query: 119 SRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           S+  A        ++ TG+L +      V   G  + L+ KEY+++ELL        +++
Sbjct: 125 SQQIASVPSEDRQVVQTGNLCLYAQECRVTRDGEDLTLSPKEYKILELLIRNPKRVWSRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++      + K +DV I  LR+K+        +I TV G GY  
Sbjct: 185 QLLERIWGIDFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 233


>gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +E+ +++E +       G+  +       +   IILDL + +I G
Sbjct: 1   MKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTNPDIGLIILDLMMPEIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ +LS   +  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVIKRVRKDS-DIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGHAQSL----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +G   +     +  G L +N D+  V  ++G  I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QGEVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              ++        K + V +  LR K+  A  G+  I+TVWG GY + ++
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH 229


>gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR
 gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA ++   L +E F V V   G  G+ + +  ++D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR     TP+ +L+      D+  GL +GADDY++KPF+   L ARIRA++RR  
Sbjct: 61  RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL+V+  A+ VE  G  + LT KE+ ++E L+L     ++K   L H++D
Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  I++V++  LR+KL +   G+  I TV G GY L  + 
Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-DLPFGRRSITTVRGAGYRLEADG 224


>gi|239813278|ref|YP_002942188.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239799855|gb|ACS16922.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 240

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  LA  +   L    F       G  G+E  + +  D +ILDL L D  G E
Sbjct: 8   QLLMIEDDARLAQMVGEYLTQSGFLFTHAGDGASGLEQLQQHAPDLVILDLMLPDTDGLE 67

Query: 62  VLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R +R          V +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++RR
Sbjct: 68  ICRRIRSLPPPASKVSVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAVLRR 127

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +   A +++  G L ++ +A+TV V G    LT  ++ ++  ++ R    LT++ 
Sbjct: 128 RSENNADTEASTVMRFGTLEIDRNARTVSVGGALADLTSYQFDLLVAMAERAGRVLTRDQ 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  +     E   + IDV + ++R  +   A     I TV G GYV  + 
Sbjct: 188 IMEAVRGRELEAFDRSIDVHMGRIRAAIEVDAKNPKRILTVRGVGYVFAKQ 238


>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 242

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 111/230 (48%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++  Y    G D +E  + +    I+LDL L    G  +
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLMLPGCDGLTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + P+ +++  S   D++ GL+ GADDYI KPF+  E+V R+R ++RR    
Sbjct: 73  CRTIRQFS-NVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   +      L ++         G  + LT  E+++++ LS       ++E  L+ L
Sbjct: 132 NDGLKAAEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           YD       + ID  I  LR+KL       ++I TV+G GY       +E
Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241


>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 245

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAARP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 241


>gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
 gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC
           15579]
          Length = 240

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG++     E D +ILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     +  G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235


>gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
 gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED+K +   +   L++  F+       ++  +  K    D I+LD+ L    G+ +
Sbjct: 2   IYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALKEELPDLILLDIMLPGEDGYSI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  L+ +  +   PV +++   +  DKVRGL++GADDYI+KPF   E VAR++A++RR S
Sbjct: 62  LERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRRCS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R      +   DL +++    V  +  ++ LT KE+++++ L   K   +T+   L H++
Sbjct: 122 RQEEDKELKCDDLRLSVGRHKVYWKEEKVELTRKEFELLQYLMENKGLVMTRNQILCHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E + +DV +  LR+KL  A    N IETV G GY +
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGEAG---NLIETVRGVGYRI 220


>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
 gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
 gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
           8739]
 gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
 gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
 gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
 gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
 gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
 gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli ATCC 8739]
 gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
 gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
 gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
 gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
 gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
 gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
 gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
 gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli W]
 gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
           dysenteriae CDC 74-1112]
 gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
           flexneri CDC 796-83]
 gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
           winged helix family [Escherichia coli KO11]
 gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
 gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator
           [Achromobacter xylosoxidans C54]
          Length = 219

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E++ V     G       +   +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDTMIGESVLDCLRAEHYAVDWVKDGHAAELALRTDPYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV I +   ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS 
Sbjct: 61  TLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     ++++  +    V G  + LT +E+ ++E L  R     ++      LY 
Sbjct: 121 GRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D      ++V+I  LRKKL         I+ V G GYV+
Sbjct: 181 WKDSVSSNAVEVYIHGLRKKLGQN-----LIQNVRGVGYVI 216


>gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 236

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 120/233 (51%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I++I+D++ +   I+  L++  F V      E   +       D I+LD+ L  + G  
Sbjct: 5   HIVVIDDEEHILELIKYNLEANGFIVSTYTSVEAMQKSIGESPIDLILLDIMLPGMDGIT 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            L   R  +     PV ++S  +   DK+ GL+ GADDYI+KPF+  ELVAR++AI+RR+
Sbjct: 65  ALNIFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRA 124

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +      +V  DL +++++  +  +   I LT KE+++++LL   K   LT+
Sbjct: 125 DRNEVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E+ L+ ++      E + +DV I  LR K   A G   YIETV G GY   + 
Sbjct: 185 EVILDKVWGYDYYGETRTVDVHIRYLRAKFE-AYGIGEYIETVRGVGYRFVKE 236


>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +  +I  G+L +    + V V+G  I LT +E+ + +L          ++  L  
Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 VWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 220


>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 247

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   + + L+ E   V     G + +E  +    D ++LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R      PV IL+     ED+VRGL+ GADDY+ KPF++ EL++RIRA++RR    
Sbjct: 69  LRRIRSFS-QVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127

Query: 123 A---QSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q+L+   D LS++   + V V G R++L   EY+++  L       LT EM L+ +
Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + ++I  LR+K+        YI T  G GY   +
Sbjct: 188 WGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFVD 232


>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 245

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AVVAATTPRTGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 241


>gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
 gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
 gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ +         D +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATNPGIDLMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV++A+R      P+ ++S  ++  DK++GL +GADDY+SKPFN  E++AR+++++RRS
Sbjct: 61  IEVIKAVRKDS-QVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QQQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 180 FERVWKQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
 gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis
           LMG 20546]
          Length = 219

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIVESLEQTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  G+LS++     V  QG  I LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKVIKTVRGLGYQL 216


>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 227

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  +A ++  +L+        T  G + + L +   FD ++LDL L  + G 
Sbjct: 1   MKVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGL 60

Query: 61  EVLRALRVAKISTP-VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           EV R LR    + P V +L+   S++D V GL+ GADDY+ KPF    L ARI+A++RR+
Sbjct: 61  EVCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q     G L ++LD +T       + LT KE+ ++E L      T +K+  +   +
Sbjct: 121 SRPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              D P  + +   +  +R KL+      + IETV+G G+ L
Sbjct: 181 AWADVPGDESVKTHVKNIRAKLNQTGAPADLIETVYGVGFRL 222


>gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 237

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 125/232 (53%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+K ++  ++L L  E + V +   G +G+E      +D IILD+ L +I G EV
Sbjct: 5   VLVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPEINGVEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L+ +R     TPV +++  ++  DKV GL  GA+DYI+KPF  EEL+AR+RA +R     
Sbjct: 65  LKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQMEP 124

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                       S +    L +    + V  +G+RI LT KE+ ++  L   KN  L ++
Sbjct: 125 IATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  ++      +  ++DV+I  +RKK+ +    K  I+TV G GY +RE 
Sbjct: 185 QMIQDVWGFDFVGDTNVVDVYIRYVRKKI-DHGYKKKLIKTVRGVGYCIREE 235


>gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 124/222 (55%), Gaps = 1/222 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED++ LA +++  L+SE F+V V   G  G+ +   +++D I+LD+ L  + G+ V 
Sbjct: 1   MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIMLPGLNGYRVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
             LR A   + + +L+      D+   L +GADD++SKPF+   LVAR+RA+ RR+   A
Sbjct: 61  ARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGRRA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +  GDL V+         G  I LT +E+ ++E L+ R    + K   L  ++D   
Sbjct: 121 PRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDSAF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + +  +++V +  +R+K+ +A  G++ +ETV G GY L  + 
Sbjct: 181 DGDPNVVEVHVSAVRRKI-DAPFGRSALETVRGAGYRLAADG 221


>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+L+L L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL++D++A+   ++ +LK E F  +       + I L +   +D +ILD+ L D  GF
Sbjct: 6   RILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVMLPDKSGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+  A+R  +   P+  L+   +  DK+ G   GADDYI+KPF+  E+VAR++A +RR+ 
Sbjct: 66  ELCGAVRQ-RTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G       +     G   VN++A  + V G R+    + + ++       N   TKE   
Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +H++       +   + V I KLR+++    G    + TV G GY L   A+
Sbjct: 185 DHVWKDEYGMFDENTVMVHIHKLRQRIEENPGQPKLLVTVRGLGYKLVSPAR 236


>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
 gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9515]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 117 RRSRG------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T++
Sbjct: 121 RRTNRAQLNSTNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        YI+TV+G GY L 
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPTYIKTVYGAGYCLE 232


>gi|292488737|ref|YP_003531624.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
           CFBP1430]
 gi|292899893|ref|YP_003539262.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291199741|emb|CBJ46861.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291554171|emb|CBA21385.1| probable transcriptional regulator ycf27 [Erwinia amylovora
           CFBP1430]
          Length = 235

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N+  +    G++ ++  K +  D ++LDL L  + G  V
Sbjct: 10  ILIVEDEPKLGQLMIDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPAMDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +++      D++ GL+ GADDYI KPF+  E+VAR++ I++R R  
Sbjct: 70  CRELRRFS-ELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCRRV 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +    L ++            + LT  E+++++ L+ +     ++E  LNHLYD  
Sbjct: 129 TEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL +    + +I  V+G GY    + 
Sbjct: 189 RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWEADG 231


>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 227

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LA  +   L++  F V +   G+D     +  +   +ILDL +  + G
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDYI KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K++ AA       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITEAADTGNRHEWIQAVYGVGYRFE 224


>gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 134/226 (59%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI +PF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|26986989|ref|NP_742414.1| osmolarity response regulator [Pseudomonas putida KT2440]
 gi|148545517|ref|YP_001265619.1| osmolarity response regulator [Pseudomonas putida F1]
 gi|24981604|gb|AAN65878.1|AE016215_13 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
 gi|148509575|gb|ABQ76435.1| Two-component response regulator OmpR [Pseudomonas putida F1]
          Length = 246

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L +   F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR      P+ +L+       +++GL+ GADDY+ KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 SVPGAPGSEDESVTFGDYELSLATRELKRGNEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 217

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 130/222 (58%), Gaps = 8/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L   ++L L+ E F V     G + IE  +   +  +ILD+ L    G+
Sbjct: 1   MKILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R  K  TPV +L+     +DK+ G + GADDY+ KP + +E+VAR++AI++R++
Sbjct: 61  SVLREIR-KKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I    L ++  A+ V V+G +++LT KEY+++  L  R+N  L++E  LN ++ 
Sbjct: 120 KPSSNDI----LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +D  I  LR+KL      ++ I+TV G GY   
Sbjct: 176 YEYYGDLRTVDTHIKNLREKLGEL---RDCIKTVRGYGYKFE 214


>gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 131/227 (57%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  L+   ++V + + G DG+ L +  ++D I+LD+ L  + G+
Sbjct: 1   MRILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVMLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    +TPV  L+    + D+VRGL+ G DDY+ KPF   EL+AR+R + RR  
Sbjct: 61  AVLKVLRATH-TTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL ++++ + V+    RI LT +E+ +++LL  R+   L++    ++++D
Sbjct: 120 PRESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + +  +++V I +LR K+ + A     I+TV G GYV+     D
Sbjct: 180 MNFDSDTNVVEVAIRRLRAKI-DDAFPVKLIQTVRGVGYVIEAKEPD 225


>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 240

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL +ED+ A+   +   L+ E +NV   + G   ++      FD IILD+GL D  GFE
Sbjct: 6   QILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR  K  TP+  L+      D+V GL+ GADDY +KPF+  E+VARI+AI RR   
Sbjct: 66  VCKQLRQ-KYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
            AQ+             + +   + N  +  ++  G  + LT  EY+++ LL        
Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++  ++H+++  +    + +D  I  LR+KL       + I T  G GY L +
Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238


>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  + + I+  L+   + V  ++ G +G E  K   +D IILD+ L  I GF 
Sbjct: 3   KILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ IL+ +   +++++G    ADDYISKPF+ + L+ R+ A++RR   
Sbjct: 63  VCEMIRKES-HVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++   D+ ++ +A    V    + LT KE++++ +L   K   LT+E+ LN 
Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+      + +++D  I  LR+KL        YI+T+   GY L  N
Sbjct: 182 LWGYDFYGDERVVDTHIKNLRRKLGVD-----YIQTIRKVGYKLEGN 223


>gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
 gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01]
 gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US]
 gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus
           CTV-05]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L+  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +A G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
 gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Bryantella formatexigens DSM 14469]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD ++   +   ++    +V +   G + +       FD ++LD+ L  I G+ 
Sbjct: 3   KILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLPKIDGYG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R  K + P+ +L+ + + E++++GL   ADDYI+KPF+   L+ +I A++RRS  
Sbjct: 63  VCEVIRQ-KSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSR 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL+++LD   V      + LT +E++++  L   K   LT++  L  L+
Sbjct: 122 QDDVPQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E +IID  I  LRKKL  A    +YIET+ G GY + + 
Sbjct: 182 KYEFFGEERIIDTHIKNLRKKLGTA----DYIETIRGVGYRIDKE 222


>gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501]
 gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM
           4166]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKVLVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ I  G L ++L+ K     G  + LT  EY+++E L   +   + KE  +  LY 
Sbjct: 121 GFTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V + +LR+KL      K  IETV G GY+  E
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKP-IETVRGLGYLFTE 222


>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
 gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
           AS9601]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E++++  L  R   T++
Sbjct: 121 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
 gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas perforans 91-118]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  +++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L    G +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225


>gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida F1]
 gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440]
 gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida F1]
 gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
 gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
 gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    + V +   G D + L     +  ++LD+ L  I G+
Sbjct: 1   MRVLVVEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R       + +L+    I DK++GL  GADDY+ KPF   EL+ARIR++ RR  
Sbjct: 61  DLLETIRKTS-RVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGD 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   DL ++     V   G RI LT KE+ ++ LL  R    LT+   ++ ++
Sbjct: 120 ELVEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFALLHLLMSRTGEALTRSQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +IDV I +LR K+ +       I T+ G GYV  E A
Sbjct: 180 DMNFDCDTNVIDVAIRRLRSKI-DDPFETKLIHTLRGVGYVFEERA 224


>gi|319405330|emb|CBI78948.1| two-component response regulator [Bartonella sp. AR 15-3]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +   +D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYALAETVNYDVMVIDRMLPYRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  ++D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIVTELRAKGNETPVLILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+ +   I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRRDKNIMLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPEK 226


>gi|255101735|ref|ZP_05330712.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307604|ref|ZP_05351775.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G  +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR    + PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMKLRE-NYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          S+   G L +N + K V + G  I  T  E++++ LL        
Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 185 SADEIYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|332671031|ref|YP_004454039.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340069|gb|AEE46652.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 230

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +
Sbjct: 3   QVLLAEDDPAIAEPLARALGREGYDVRVQGTGQGAIDGASTA--DLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTVG 120

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   ++ V++ A         +HLT KE+ ++ +L     T + +E  +  ++
Sbjct: 121 DPGDEDELHAQNVRVDVAAHRAFQGDRELHLTAKEFDLLRVLVAAAGTVVARETLMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                   K +D+ +  LR+KL + AG   Y+ TV G G+     A +
Sbjct: 181 GSDPTGSTKTLDMHVSWLRRKLGDDAGAPRYVTTVRGMGFRFETGAGE 228


>gi|296268755|ref|YP_003651387.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296091542|gb|ADG87494.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  ++  +    D ++LDL L    G +
Sbjct: 4   RVLVVDDDAALAEMLGIVLRGEGFEPSFVYDGDKALDAFREIRPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +EL+ARIRA +RR+  
Sbjct: 64  VCRRIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYIIKPFKPKELIARIRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+++++   +V+     I+LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PTPEILQIGDITIDVAGHSVKRGDQTINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 263

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+ +  +I  +L+ E   V     G + +E    +    I++D+ +  + G   
Sbjct: 27  VLVADDDRDIVRAIATLLEQEGLTVLRAYNGLEALEAVAEHPVSLILIDVMMPKLDGLSA 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R  K + P+ ILS  S   DK+ GL  GADDYI+KP++ +EL AR+++ +RR    
Sbjct: 87  MMKIREQK-NIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRYLHL 145

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q LI  G L  + D + + V G  + LT KE +++EL         + E   
Sbjct: 146 GAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAEEIY 205

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + +++         + V I  +R+K+       NY++ VWG GY L++ A
Sbjct: 206 SRVWNEDAYAVENTVMVHIRHIREKIEINPREPNYLKVVWGIGYQLQDPA 255


>gi|94310885|ref|YP_584095.1| osmolarity response regulator [Cupriavidus metallidurans CH34]
 gi|93354737|gb|ABF08826.1| two-component transcriptional regulator, winged helix family
           [Cupriavidus metallidurans CH34]
          Length = 240

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + F V V +      +L     FD ++LDL +    G  + R LR A   TP+ +L+  
Sbjct: 27  EQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAK 86

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +          GD  
Sbjct: 87  GEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRKGPAEVPGAPSETPETFAFGDFV 146

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+      I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 147 LNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQ 206

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 207 ISRLRKLIEPDPGNPRFIQTVWGLGYVFIPDG 238


>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 223

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
           coli WV_060327]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 -TLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|311896323|dbj|BAJ28731.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 225

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F  +    G+  +   +  + D ++LDL L    G +
Sbjct: 4   RVLVVDDDTALAEMLGIVLRGEGFEPFFVADGDKALAAFRETKPDLVLLDLMLPGRDGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDY++KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRQIRAESG-IPIVMLTAKTDTVDIVVGLESGADDYVTKPFKPKELVARVRARLRRAEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL +++   +V+ +G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PTPEQLTIGDLVIDVAGHSVKREGRGIPLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYK 221


>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
 gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
 gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
           409-05]
 gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
           [Gardnerella vaginalis 5-1]
          Length = 250

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 66/233 (28%), Positives = 113/233 (48%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + ++ +   V   G   +   +  + D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPIMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R + ++K+  P+ +L+   +  DK+ GL +GADDY++KPF+  EL+AR  A++RR    
Sbjct: 74  TRRI-ISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVERA 132

Query: 123 AQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +Q          I  G L +    + V +    +H T  E+ ++  L+   +T   +E  
Sbjct: 133 SQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREKL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  I  LR K+     G  +I TV G GY       D
Sbjct: 193 LEEVWDWPDASGTRTVDSHIKSLRHKI-----GSEWIRTVHGIGYAFEPPISD 240


>gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
 gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B]
          Length = 219

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+S  +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIMETLESTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri
           93-146]
 gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri
           93-146]
          Length = 220

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+     D       L +   +  IILDLGL DI G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMARENYAYDCADSAVGASALLQSSHYSLIILDLGLPDIDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I  PV IL+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  NALRQWRREGIDAPVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +   D+ ++L ++ V   G  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GLCNNFLQVDDIHLDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +D      ++V I  LR+KL     GK  I+T+ G GY L + 
Sbjct: 181 WQDGLSSNSLEVHIHNLRRKL-----GKKRIKTLRGVGYRLEKT 219


>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
 gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
          Length = 260

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2]
 gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum]
 gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum]
 gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2]
          Length = 231

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F+V     G   I   +    D  +LD+ L DI GF+
Sbjct: 4   KIVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQQIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +  S             L + +++    + G  + LT  E++++  L   + + ++ E  
Sbjct: 123 YNHSTASPTVEEYEKDGLILKINSHQCILYGKEVFLTPIEFKILLYLFEHQGSVVSSETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL         I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLHEEPRKPKLIKTVWGVGYIIEK 231


>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 244

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 19  RVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 79  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 137

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 138 AVVAASTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 197

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 198 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 240


>gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L ++ F +     GE G++L +  ++  I+LD+ L  + GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLTAQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S ++   ++VNL A+   + G  + LTG EY+++ LL       ++KE  
Sbjct: 120 HINSLNVATTSKLLVNGITVNLAAREASIDGSTLTLTGTEYEILTLLCKNAGEVVSKEQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R     + ID+ +  +RKK++    G+  I+T+ G GYV 
Sbjct: 180 SEEVLGRRLASFDRSIDMHVSNIRKKIAEHIPGER-IKTMRGTGYVF 225


>gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 232

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  L+  +   L    + V+       GI        D +ILD+ L D  GFE
Sbjct: 4   RVLIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGRRTPDVVILDVMLPDFDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R      PV +L+      D++ GL+ GADDY+ KPFN  EL+AR++AI+RR  G
Sbjct: 64  TCRRIRAVS-DVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A     +  G L ++  +++V + G    LT  ++ ++  L+     TL++E  ++ + 
Sbjct: 123 SAAVARTLRFGRLEIDPGSRSVRIDGRECTLTSYQFDVLVALAENPGRTLSREQLMDAVK 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + IDV I ++R  + +       I TV G GYV 
Sbjct: 183 GEELDAFDRSIDVHISRIRAAIESDPKHPRRIITVRGAGYVF 224


>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
           ATCC 53653]
          Length = 249

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +E  L    + V     G DG+   + +  D ++LD+ L D+ GFE
Sbjct: 12  RILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPDLDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR   + TP+  L+  + + D++ GL +G DDY+ KPF+ EE++ RIRAI+RR+  
Sbjct: 72  ITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTGH 131

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  GDL ++  A  V   G  I L+  E++++ LL       L+K  
Sbjct: 132 DVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKSR 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + +I++ ++  LR+K+         I T  G GY LR
Sbjct: 192 ILDRVWGFDFSGDGRIVETYVRYLRRKI--DHLDPPLIHTERGVGYCLR 238


>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK + + I  +L+ E + V     G++ I   +   FD IILD+ L DI G +
Sbjct: 5   KILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDIDGID 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   + T +  L+  +   DK+ GL+ GADDYI+KPF+  EL AR++A +R+ + 
Sbjct: 65  VCRKIRDKFLGT-IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQKR 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I    + +N ++  V V   RI L+ KE+Q++  +    N  LT+E   
Sbjct: 124 LNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++   D  ++  + V I KLR+K+    G   +I+TVWG GY  
Sbjct: 184 NSVWGFGDFGDINTVTVHIKKLREKI---PGCDRFIKTVWGIGYKF 226


>gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 231

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD  ++  ++  L++E + V     GE+   L      D ++LDL L  + G
Sbjct: 1   MKQILLVEDDPEISDLVKAHLENEGYRVLTAADGEEAARLFANGGVDLVLLDLMLPKMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +L+ +RV   S P+ ILS   S  DK  GL  GADDYI+KPF+  EL AR++A +RR+
Sbjct: 61  MTLLKQIRV-HSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRA 119

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++  G + +++DA      G  + LT KE+Q++ +         TKE 
Sbjct: 120 TDYTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++     E  +I+V I +LR+K+         IETVWG GY L
Sbjct: 180 LYQQIWNEPYLGEENVINVHIRRLREKIETNPSKPEIIETVWGIGYKL 227


>gi|78066718|ref|YP_369487.1| osmolarity response regulator [Burkholderia sp. 383]
 gi|107028883|ref|YP_625978.1| osmolarity response regulator [Burkholderia cenocepacia AU 1054]
 gi|116689959|ref|YP_835582.1| osmolarity response regulator [Burkholderia cenocepacia HI2424]
 gi|170733298|ref|YP_001765245.1| osmolarity response regulator [Burkholderia cenocepacia MC0-3]
 gi|254247957|ref|ZP_04941278.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|77967463|gb|ABB08843.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
 gi|105898047|gb|ABF81005.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648048|gb|ABK08689.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|124872733|gb|EAY64449.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|169816540|gb|ACA91123.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|325523540|gb|EGD01847.1| osmolarity response regulator [Burkholderia sp. TJI49]
          Length = 244

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ S
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGEFS 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1125]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|169824288|ref|YP_001691899.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831093|dbj|BAG08009.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDDK++   I   L +E ++        +          D IILD+ L    G E+L+ 
Sbjct: 21  VEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEILKE 80

Query: 66  LR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GH 122
           +R      + PV +L+  ++  DK+ GL SGADDY+ KPF+  EL+AR+RA++RRS    
Sbjct: 81  IRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSSLSK 140

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I+  ++ ++ D +TV V G  + LT KE++++  L       LT+E  +  ++   
Sbjct: 141 TKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIWGFD 200

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E E + +DV I  LR+KL NA+     I+T+   GY 
Sbjct: 201 FEGESRTVDVHIATLRQKLKNASS---IIKTIRNLGYK 235


>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
 gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acidithiobacillus caldus ATCC 51756]
          Length = 247

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +   + L L+ + F+V      E   E  +      I+LD  L    G  
Sbjct: 12  RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R+LR A+ +   P+ +L+      D+V GL+SGADDY+SKPF+  EL AR++A++RRS
Sbjct: 72  WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRS 131

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G    + +  G+L V++ A  V +    + +   E++M+ L +   +   ++E  L+H+
Sbjct: 132 YGGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHI 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  +   E + +DV I +LR+ L+   G  N IETV G GY 
Sbjct: 192 WGRQSFIEERTVDVHIRRLRRALAKV-GYANIIETVRGEGYR 232


>gi|255305635|ref|ZP_05349807.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD+ +   +   L SEN++V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDRNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E 
Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEEE 229


>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
 gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  +IE+ LK+  ++VY    G++ +++    +   +++D+ +  + G   
Sbjct: 4   ILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKDIQLVLMDVMMPQMDGITA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R    + PV +L+  S   DKV GL+ GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 64  MAKIRE-NSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQL 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  +V G + ++  +K V + G  + LT  EY +++LL        + +     
Sbjct: 123 GGGETPKDKLVIGGIELDDKSKQVTLDGEVMPLTPTEYDILKLLMQNVGKVFSTKEIYRA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++          + V I  LR+K+        YI+ +WGRGY + 
Sbjct: 183 VWKEDPMGAEGSVAVHIRHLREKIEINPSDPRYIKVIWGRGYKME 227


>gi|115351977|ref|YP_773816.1| osmolarity response regulator [Burkholderia ambifaria AMMD]
 gi|121601171|ref|YP_993296.1| osmolarity response regulator [Burkholderia mallei SAVP1]
 gi|124384064|ref|YP_001029261.1| osmolarity response regulator [Burkholderia mallei NCTC 10229]
 gi|126439716|ref|YP_001059384.1| osmolarity response regulator [Burkholderia pseudomallei 668]
 gi|126448269|ref|YP_001080804.1| osmolarity response regulator [Burkholderia mallei NCTC 10247]
 gi|126455359|ref|YP_001066655.1| osmolarity response regulator [Burkholderia pseudomallei 1106a]
 gi|134276984|ref|ZP_01763699.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|134295968|ref|YP_001119703.1| osmolarity response regulator [Burkholderia vietnamiensis G4]
 gi|161524506|ref|YP_001579518.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|170699751|ref|ZP_02890785.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171320810|ref|ZP_02909815.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|172060899|ref|YP_001808551.1| osmolarity response regulator [Burkholderia ambifaria MC40-6]
 gi|217421794|ref|ZP_03453298.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221209186|ref|ZP_03582178.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|221215040|ref|ZP_03588007.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|226197493|ref|ZP_03793070.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237812712|ref|YP_002897163.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238562218|ref|ZP_00440797.2| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242317900|ref|ZP_04816916.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|251766642|ref|ZP_02264532.2| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254178039|ref|ZP_04884694.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|254179405|ref|ZP_04886004.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|254198234|ref|ZP_04904656.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|254206419|ref|ZP_04912771.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|254252143|ref|ZP_04945461.1| Response regulator [Burkholderia dolosa AUO158]
 gi|254260987|ref|ZP_04952041.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
 gi|254297288|ref|ZP_04964741.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|254358171|ref|ZP_04974444.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|115281965|gb|ABI87482.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
 gi|121229981|gb|ABM52499.1| DNA-binding response regulator RisA [Burkholderia mallei SAVP1]
 gi|124292084|gb|ABN01353.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10229]
 gi|124894752|gb|EAY68632.1| Response regulator [Burkholderia dolosa AUO158]
 gi|126219209|gb|ABN82715.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 668]
 gi|126229001|gb|ABN92541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106a]
 gi|126241139|gb|ABO04232.1| DNA-binding response regulator RisA [Burkholderia mallei NCTC
           10247]
 gi|134139125|gb|ABO54868.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|134250634|gb|EBA50713.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
 gi|147753862|gb|EDK60927.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
 gi|148027298|gb|EDK85319.1| DNA-binding response regulator OmpR [Burkholderia mallei
           2002721280]
 gi|157807187|gb|EDO84357.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           406e]
 gi|160341935|gb|ABX15021.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|160699078|gb|EDP89048.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           10399]
 gi|169654975|gb|EDS87668.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei S13]
 gi|170135342|gb|EDT03636.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171093932|gb|EDT39048.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171993416|gb|ACB64335.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
 gi|184209945|gb|EDU06988.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1655]
 gi|217395536|gb|EEC35554.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 576]
 gi|221164976|gb|EED97455.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD1]
 gi|221170924|gb|EEE03379.1| DNA-binding response regulator OmpR [Burkholderia multivorans CGD2]
 gi|225930872|gb|EEH26882.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506008|gb|ACQ98326.1| osmolarity response regulator [Burkholderia pseudomallei MSHR346]
 gi|238523088|gb|EEP86529.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
           4]
 gi|242141139|gb|EES27541.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1106b]
 gi|243065036|gb|EES47222.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
 gi|254219676|gb|EET09060.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           1710a]
          Length = 244

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 31  EQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 90

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ S
Sbjct: 91  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGEFS 150

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 151 LNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 210

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 211 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 242


>gi|53719705|ref|YP_108691.1| osmolarity response regulator [Burkholderia pseudomallei K96243]
 gi|53723644|ref|YP_103129.1| osmolarity response regulator [Burkholderia mallei ATCC 23344]
 gi|76812107|ref|YP_333899.1| osmolarity response regulator [Burkholderia pseudomallei 1710b]
 gi|83719808|ref|YP_442618.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|167563113|ref|ZP_02356029.1| osmolarity response regulator [Burkholderia oklahomensis EO147]
 gi|167570297|ref|ZP_02363171.1| osmolarity response regulator [Burkholderia oklahomensis C6786]
 gi|167581552|ref|ZP_02374426.1| osmolarity response regulator [Burkholderia thailandensis TXDOH]
 gi|167586924|ref|ZP_02379312.1| osmolarity response regulator [Burkholderia ubonensis Bu]
 gi|167619667|ref|ZP_02388298.1| osmolarity response regulator [Burkholderia thailandensis Bt4]
 gi|167720066|ref|ZP_02403302.1| osmolarity response regulator [Burkholderia pseudomallei DM98]
 gi|167739078|ref|ZP_02411852.1| osmolarity response regulator [Burkholderia pseudomallei 14]
 gi|167816290|ref|ZP_02447970.1| osmolarity response regulator [Burkholderia pseudomallei 91]
 gi|167824672|ref|ZP_02456143.1| osmolarity response regulator [Burkholderia pseudomallei 9]
 gi|167836959|ref|ZP_02463842.1| osmolarity response regulator [Burkholderia thailandensis MSMB43]
 gi|167846202|ref|ZP_02471710.1| osmolarity response regulator [Burkholderia pseudomallei B7210]
 gi|167894783|ref|ZP_02482185.1| osmolarity response regulator [Burkholderia pseudomallei 7894]
 gi|167903182|ref|ZP_02490387.1| osmolarity response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167911414|ref|ZP_02498505.1| osmolarity response regulator [Burkholderia pseudomallei 112]
 gi|167919428|ref|ZP_02506519.1| osmolarity response regulator [Burkholderia pseudomallei BCC215]
 gi|189350738|ref|YP_001946366.1| osmolarity response regulator [Burkholderia multivorans ATCC 17616]
 gi|206560374|ref|YP_002231138.1| osmolarity response regulator [Burkholderia cenocepacia J2315]
 gi|221198232|ref|ZP_03571278.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
 gi|254189208|ref|ZP_04895719.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254200083|ref|ZP_04906449.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|257138831|ref|ZP_05587093.1| osmolarity response regulator [Burkholderia thailandensis E264]
 gi|52210119|emb|CAH36097.1| oxidative stress related two component system, transcriptional
           regulator [Burkholderia pseudomallei K96243]
 gi|52427067|gb|AAU47660.1| DNA-binding response regulator RisA [Burkholderia mallei ATCC
           23344]
 gi|76581560|gb|ABA51035.1| RisA protein [Burkholderia pseudomallei 1710b]
 gi|83653633|gb|ABC37696.1| DNA-binding response regulator RisA [Burkholderia thailandensis
           E264]
 gi|147749679|gb|EDK56753.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
 gi|157936887|gb|EDO92557.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
           Pasteur 52237]
 gi|189334760|dbj|BAG43830.1| two-component system osmolarityresponse regulator [Burkholderia
           multivorans ATCC 17616]
 gi|198036415|emb|CAR52311.1| oxidative stress related two-component regulatory system, response
           regulator protein [Burkholderia cenocepacia J2315]
 gi|221182164|gb|EEE14565.1| DNA-binding response regulator OmpR [Burkholderia multivorans
           CGD2M]
          Length = 241

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 68/212 (32%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 28  EQGFNVYVAENATAMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 87

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ S
Sbjct: 88  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPAELPGAPSETTEVFEFGEFS 147

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 148 LNLATRTLTKSGQEIPLTTGEFSVLKVFARHPRQPLSREKLMELARGREYEVFDRSLDVQ 207

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 208 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 239


>gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
 gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
          Length = 234

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 132/228 (57%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  ++L L+ E +   +   G  G+E     E+D I+LDL L ++ G E
Sbjct: 8   RVLIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPELNGLE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 68  VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDH 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    QS +   +L +    + V+     I LT +EY+++  L    NT +++E+ 
Sbjct: 127 NKEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREVL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++  + E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 187 LDKVWGYKTEVETNVVDVYIRYLRNKI-DVPGKDSYIQTVRGTGYVMR 233


>gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp.
           YIT 12067]
          Length = 232

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPG 59
           ++L+ +D+K +   +    K E F   V   G + ++  L   +E   ++LD+ + +I G
Sbjct: 3   KMLIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEIDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEV R LR   +  P+ +++      DK+ GL  GADDY+ KPF+  E++AR+RA++RR 
Sbjct: 63  FEVCRRLRKESM-VPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRRL 121

Query: 120 RGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +    +   +L +NL+   V++ G  + LT KE +++  L+       +++  L+
Sbjct: 122 GAQEPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLLD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++      + + +D  I +LR KL         I+T+WG GY   E  KDE
Sbjct: 182 SIWGYDYFGDSRTVDSHIKRLRAKLDKYEHPLWEIKTIWGVGYRF-EGHKDE 232


>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 227

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   IE  LKSE  N+     G++ +E       D ++LD+ +  + G+  
Sbjct: 5   ILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMDGWTA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +L+  +  E+++ G Q G D Y++KP + + LVA+I+A+++R+   
Sbjct: 65  CKELRKIS-NVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYSE 123

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            ++         L +N +   V+V    ++L+ KE++++  L   K+  L++E  L+ ++
Sbjct: 124 EENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +++ +D  + +LR+KL   +     I TV G GY   
Sbjct: 184 GIDYYGDLRTVDTHVKRLREKLGVKSY---LIATVRGVGYKFE 223


>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
 gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
          Length = 229

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + + + L +E + +     G + I      +   +ILD+ L DI G E
Sbjct: 3   KILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R  K++ P+ ILS      DK++GL +GADDYI+KPFN+ E + R++ ++RR+  
Sbjct: 63  VCRKIRE-KLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTYL 121

Query: 120 ---RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              RG+      IV G L++     TV +  + I LT  E+++++LL++ K    + E  
Sbjct: 122 FDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEEI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++  +       + V I  LR K+     G+  I TVWG GY + 
Sbjct: 182 FETVWKEKYFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGYKIE 229


>gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 220

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V   G  + LT KEY ++  L        T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
 gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Microbacterium
           testaceum StLB037]
          Length = 218

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +   L++  +     D G D ++     E D ++LD+GL  I GFE
Sbjct: 3   RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR    + PV +L+  +S  D V GL +GA+DY++KPF  +EL+AR+R+ +R    
Sbjct: 63  VLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  GD+++++  +   + G  + L+ +E+ + E         L++E  L+ ++  
Sbjct: 123 ANTISISHGDVTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +P   ++DV++  LR K   A      I TV G GY   
Sbjct: 183 DFDPGSNVVDVYVRYLRGKFGAA-----RIATVRGAGYRWE 218


>gi|312870288|ref|ZP_07730416.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
 gi|311094172|gb|EFQ52488.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Lactobacillus oris PB013-T2-3]
          Length = 238

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 16/239 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+ ++   + + LK +N+       G +  E        +D I+LDL L    
Sbjct: 1   MNILMIEDNHSVCEMMAMFLKKQNWQYEFAYDGVEAEEKFNAAPDKWDVILLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRR 120

Query: 119 SRGHAQSLIVTG-----------DLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           S+   Q     G           +  +N   + V +   +I  LT KE+ +++ L+ +  
Sbjct: 121 SQLAKQPAEQPGTADRDFDVKTKNFRMNTKTREVFLYDQQIDDLTPKEFDLLKTLASKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              T+E  L  ++D     + + +D  I KLR+KL +   G   I+TVWG GY   + A
Sbjct: 181 QVFTREQLLQLVWDYEYYGDERTVDAHIKKLRQKLEDL--GPQVIKTVWGVGYKFDDEA 237


>gi|294507174|ref|YP_003571232.1| phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
 gi|294343502|emb|CBH24280.1| Phosphate regulon transcriptional regulatory protein phoB
           [Salinibacter ruber M8]
          Length = 253

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 71/239 (29%), Positives = 121/239 (50%), Gaps = 5/239 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           R+L+ EDD  L  S+E       + V+    GED + E+     +D ++LD+ L    GF
Sbjct: 14  RLLIAEDDPDLGSSLESFFAQHGYEVHHAMEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R + + +PV +L+     E K+RG   GADDY++KPF+ + L AR+ A++ RS+
Sbjct: 74  EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKVLAARVEAVLSRSQ 133

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +   G++SV+   +TV      I LT  E+ ++      +  T+++E  L  
Sbjct: 134 SALPDTGDVFAFGNVSVHFPDETVTRDSEPIGLTDLEFDILTYFIEHRGRTVSREQLLRD 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR-ENAKDETCEYLET 235
           ++    +   + ID  +  LRKK+        Y++TV+G GY    ++  D +    +T
Sbjct: 194 VWGISGDITTRTIDRHVASLRKKIEPTPDDPAYLQTVYGIGYKFVTDDVPDPSPSASQT 252


>gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           CFT073]
 gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89]
 gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC
           O1]
 gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88]
 gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a]
 gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
 gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli
           CFT073]
 gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli]
 gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli]
 gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli]
 gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli]
 gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli]
 gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli]
 gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli]
 gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli]
 gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli]
 gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli]
 gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli]
 gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli]
 gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli]
 gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli
           UTI89]
 gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory
           system with BasS [Escherichia coli APEC O1]
 gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627]
 gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O127:H6 str. E2348/69]
 gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli S88]
 gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli ED1a]
 gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           LF82]
 gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp.
           3_2_53FAA]
 gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972]
 gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034]
 gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101]
 gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972]
 gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146]
 gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           2362-75]
 gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           WV_060327]
 gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           RN587/1]
 gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA206]
          Length = 222

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
 gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           microti CCM 4915]
          Length = 228

 Score =  258 bits (661), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L+ E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADPIRTVRGAGYSF 227


>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 237

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 135/236 (57%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQSK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   +
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRDEEDN 236


>gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217]
 gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family
           [Shewanella denitrificans OS217]
          Length = 225

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +     ++N        G++G+ L +   +D I+LD  L  + G 
Sbjct: 1   MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR +  STPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R+  + +R++
Sbjct: 61  TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A + +V G L + L  + V +  H + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY L +
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEI-GFPEMIETVRGAGYRLSK 223


>gi|307151276|ref|YP_003886660.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306981504|gb|ADN13385.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 801

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 12/246 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK     ++  L    + V +   GE G+EL   + +D I+LDL L  + G 
Sbjct: 1   MKILVVEDDKFTIEFLQTTLTVSGYTVDLASDGESGLELATLWNYDLILLDLQLPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR  K +TP+ IL+  S     ++GL +GADDY+ KP + + L+A+IR++VRRS 
Sbjct: 61  KICRQLRALKNTTPILILTVESENNKIIQGLDAGADDYLIKPCDPKYLIAKIRSLVRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  SL+  GDL ++  +  V  Q   + L  +EY++++L     +   ++   L+ L+ 
Sbjct: 121 GY-DSLLSWGDLCLDPVSTQVTYQQQPLVLRRQEYKLLKLFLRNPHRVFSRSNILDLLWS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR----------ENAKDETC 230
             D P    +   I  LR KL ++   ++ IET++G GY L+          + A+D  C
Sbjct: 180 AEDFPSENAVTNLIKDLRNKLKDSGMTEDCIETLYGLGYRLKARPDKLLSKNQAARDNKC 239

Query: 231 E-YLET 235
           E  LET
Sbjct: 240 EKNLET 245



 Score =  101 bits (253), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 16/163 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++DD  +  +++ +L      +          E+      D ++LD+ +    G E+
Sbjct: 493 VIIVDDDPTMLTALKNLLHPWGLKITGLTEPSHFWEVVTQTHPDLLLLDIEMPTFNGIEL 552

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R +R        P+ +++G + IE   +  ++GADD I KP    ELVAR+   + RSR
Sbjct: 553 CRVVRQDANYSDLPILVVTGHTEIEYIQQAFEAGADDLIRKPIVPPELVARVLGRLERSR 612

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEY 155
                      QS        ++   K          LT  E+
Sbjct: 613 LRQQLDDLRRQQSQDWQEKAKIDPLTKIANR------LTFDEF 649



 Score = 48.3 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 2/124 (1%)

Query: 10  KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDL--GLTDIPGFEVLRALR 67
            ALA +++         V V        +L        I+L +  G  D  G  +LR L+
Sbjct: 375 PALATALQQEASQWEIQVEVVQDCTTAQDLLNKQIPSVILLKVKGGTQDQKGLALLRTLK 434

Query: 68  VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLI 127
                 P+  L+   S+  ++     G++ Y+ +P    +++  I  ++  S     ++I
Sbjct: 435 EQFPHIPLLTLAEQDSLSHRIEAGNFGSERYMVQPVTATQVLETITQLLPPSNSIEANVI 494

Query: 128 VTGD 131
           +  D
Sbjct: 495 IVDD 498


>gi|167032707|ref|YP_001667938.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida GB-1]
 gi|166859195|gb|ABY97602.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida GB-1]
          Length = 226

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q + +   DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTTLSLADLRLDLIRRRAERAGTRIDLTAKEFCLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHPNKLIHTVRGMGYVLEERTE 226


>gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. Sakai]
 gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. TW14359]
 gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. FRIK966]
 gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC869]
 gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC508]
 gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7
           str. EC4115]
 gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli]
 gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli]
 gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O157:H7 str. TW14359]
 gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212]
 gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. G5101]
 gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. 493-89]
 gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H- str. H 2687]
 gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044]
 gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125]
          Length = 240

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
 gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
           H7858]
 gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
 gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
 gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
 gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes str. Scott A]
          Length = 225

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica
           W22703]
          Length = 219

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +             L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSGGYACDCAGTAAQAHSLLLSSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   I+ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRRQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLIQQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+     ++V I  LR+KL     GK+ I T+ G GY L   
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTIRGIGYRLEAP 219


>gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis
           z3032]
 gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis
           z3032]
          Length = 240

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KPF+  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+L     L ++        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQTLDAQSPLVIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      + +I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDDDQPFIRAVYGVGYRWEADA 236


>gi|241665358|ref|YP_002983717.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|240867385|gb|ACS65045.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 279

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----------FDAIIL 50
           MR+LL+EDD  +  S+   L+ + F +     GE  +                 FD ++L
Sbjct: 36  MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRDGEAALHAVTAPGAGGAEAGGTLFDLMLL 95

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G EV+R LR   I  P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL A
Sbjct: 96  DLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAA 155

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R     +
Sbjct: 156 RMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWS 215

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                ++LY   +E     ++V+I  LRKKL     G + I+ + G GYV+    ++ + 
Sbjct: 216 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVI---PRETSA 267

Query: 231 EYLETA 236
              E A
Sbjct: 268 SPAEPA 273


>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
 gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
          Length = 224

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 121 KKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL        YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLG---SSGEYIKTIYGVGYKL 222


>gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 224

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 120/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA +I   L +E F   V   G+DG  +    EFD I+LD+ L    G+
Sbjct: 1   MRVLVVEDEVRLAETIRRGLVAEGFVTAVELNGDDGFAIACSDEFDVIVLDIMLPGKHGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR   + TP+ +LS      D       GADDY+ KPF+    +AR+RA+VRR  
Sbjct: 61  DIVRDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDLS++     V   G  + LT +EY ++E L       +TK   +  ++D
Sbjct: 121 PQRPSILTVGDLSLDPAKHQVIRAGIELTLTPREYSVLEFLMRNNGVVVTKTEIVRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +  I++V+I  LRKK+ +   G + IET+ G GY     A
Sbjct: 181 TNYEGDENIVEVYIGYLRKKV-DLPFGTHSIETIRGIGYRFVGTA 224


>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
           5521]
 gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 229

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++A+  +I   LK++         GE+ +E  K    D +ILDL +  I G E
Sbjct: 3   KILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLMMPKIFGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+      DK+ GL+ GADDYI KPF+  E+VARI+ I RR   
Sbjct: 63  VCKEIRKIS-EVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVNS 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +       +    +L+++LD     + G +I +T KE +++ L++  +   L++E  L+
Sbjct: 122 KSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREEILD 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + +++D  I +LRKKL      K  I+TV+G GY   
Sbjct: 182 KVWGYDYFGDTRVVDTQIKRLRKKLPEE-DEKWVIKTVYGIGYKFE 226


>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 234

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 119/235 (50%), Gaps = 13/235 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  I+++EDDK +   +E+ L+S+ + V+  + G++G+ + +  + D  I+D+ +  + 
Sbjct: 1   MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPVMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +   LR  K   PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR
Sbjct: 61  GITMTMRLRE-KYEFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 119

Query: 119 S---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +   +   + G L VN D   V V G ++ +T  E++++ LL        
Sbjct: 120 YNRFQEALNKKEEKERSYMIGGLEVNEDRVEVLVDGRQVKMTPIEFKILLLLIKHPGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + E     +++       + I V I  +R+K+        Y++ VWG GY + + 
Sbjct: 180 SAEEIYERVWN-EKAVNTETIMVHIRNIREKIEINPKEPKYVKVVWGIGYKMEKQ 233


>gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
 gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus
           MO6-24/O]
          Length = 219

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY++I       +  +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++RKK+       N I+TV G GY L  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APNIIKTVRGLGYQLNAN 219


>gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1]
          Length = 225

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F   V   G   +   +  + D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVARIRA VRR   
Sbjct: 64  VCRAIRAESG-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G++ +++ A  V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 221


>gi|229819651|ref|YP_002881177.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229565564|gb|ACQ79415.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 230

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A+A  +   L  E ++V V   G   IE       D  +LDLGL D+ G +
Sbjct: 6   RVLLAEDDPAIAEPLARALTREGYDVSVHGTGRGAIEGAAST--DLFVLDLGLPDMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR  +
Sbjct: 64  VARWIRNQGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRAGA 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G     +   ++ V++ A         + LT KE++++ +L     + +++E  +  ++
Sbjct: 124 DGGDDDELSAQNVRVDVAAHRAFQGERELQLTAKEFELLRVLVREAGSVVSRESLMREVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   K +D+ I  LR+KL + A    YI TV G G+   +
Sbjct: 184 ASDPTGSTKTLDMHISWLRRKLGDDANAPRYISTVRGMGFRFED 227


>gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
 gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           R+L++ED+ ++   + L LK   + V      E  +EL    E  DA +LD+ L  + G 
Sbjct: 3   RVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R       + I+S      DK+RGL  GADDYI+KPF+  ELVAR+ A+ RR +
Sbjct: 63  SLCETIRRDDNDIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALTRRIK 122

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +V+G   ++  ++ +   G  I LT  E+Q++EL      T L +E
Sbjct: 123 RGSSSPKAAEEPEQLVSGPFVLDEKSRVLYKAGKPIDLTQVEFQIMELFFRNPATALVRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  ++      +VKI+DV I +LR K+ +      +I TVWG GY  
Sbjct: 183 KILEGVWGENYFGDVKIVDVNIRRLRMKIEDEPSNPQHILTVWGYGYRW 231


>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
 gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E  K    D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGKSG---EYIKTIYGVGYKL 221


>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
 gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
 gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
 gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
 gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
           6014059]
          Length = 228

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LAH +   L++  F V +   G+D     +  + + +ILDL +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K++  A       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFE 224


>gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 222

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILTAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
 gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 240

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 14/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAFEPPEE 240


>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
 gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas gardneri ATCC 19865]
          Length = 229

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G    E + IDV I +LRK L    G +N ++TV G GY     A
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRFSSAA 229


>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
 gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
          Length = 267

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 38  KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 96

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 97  TLKELRQQ-YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 155

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 156 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 215

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 216 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLMV 264


>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 236

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDDK +   +E+ LKS+ + V+    G +G++  +  E D  I+D+ +  + G  
Sbjct: 5   RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVMMPKMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   LR  K   PV  LS  S   DK+ GL  GADDYI+KPF   EL+AR+ + +RR   
Sbjct: 65  MTAKLRE-KYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYHR 123

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +     +   G L VN +   V V    + +T  E++++ LL          
Sbjct: 124 FLDRLSSKQAEDPRIHRLGGLEVNEETVEVMVDDKPVKVTPIEFKILLLLIQNPGRVFPA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E     +++ R       + V I  LR+K+        Y++ VWG GY + +  
Sbjct: 184 EEIYERVWNER-AINTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEKQP 236


>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
 gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
           R2-561]
 gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
          Length = 225

 Score =  258 bits (661), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F+V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
 gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
           15579]
          Length = 234

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ LK+E   V+    G D + L +  +   II+D+ +  + G +
Sbjct: 9   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 69  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 127

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K V V    I LT  EY+++ELL   K    + E    
Sbjct: 128 LGNYKETEDKVVAGSLILDKKRKIVSVDEKEIRLTPIEYKILELLIENKGRVFSIEEIYE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 188 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 234


>gi|119492095|ref|ZP_01623548.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119453305|gb|EAW34470.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 222

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 129/225 (57%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  ++  L+   F   + + G + +   +  +++ +ILDLGL  I G E
Sbjct: 3   RILIAEDEPHIAAFLDKKLRDNGFITTIAEDGYEALNQVRHEQYNLLILDLGLPGIEGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR      P+ IL+    + DKV GL+ GA+DY++KPF+ EEL+ARIR  +R+   
Sbjct: 63  VLEELRGQGEEIPIIILTARDEVGDKVSGLEGGANDYVTKPFSFEELLARIRLQLRQPST 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  +  G++++++ ++TV V   R+ L+  E+ +++ L    +  L+++  LN++
Sbjct: 123 PEPKAERFLKVGNITLDIRSRTVMVGDRRVELSNYEFILLDTLMRHPDQVLSRDQILNYV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +    I+DV+I  LRKKL      +N IETV   GY LR+
Sbjct: 183 WGYDYDSSSNIVDVYIGYLRKKL-----NRNLIETVRSVGYRLRK 222


>gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
 gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC
           33392]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 19  MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLPKLDGL 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++++G+Q GADDY+ KPF   E+V R++A++RR  
Sbjct: 79  EVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRY 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G++ ++   +   +    I LTG+EY+++EL  L K   L++      L +
Sbjct: 139 GQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLSN 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 199 WDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 234


>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 236

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 119/230 (51%), Gaps = 15/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED + LA  IE  L +  + V +   G   ++L    + D ++LD  L  + G EV
Sbjct: 4   ILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           LR LR     TPV +L+  S   D+V GL+ GADDY++KPF+  EL+AR+RA++RR+   
Sbjct: 64  LRRLRQESP-TPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTDLV 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  R  +   +  G L+++       + G  + LT  E++++ LL         + 
Sbjct: 123 RQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFGRS 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++  +   E + +D  + +LRKKL         IETVWG GY LR
Sbjct: 183 YLLDTIWGDQFVGE-RSVDNAVLRLRKKLGPLGEA---IETVWGVGYRLR 228


>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Bifidobacterium longum DJO10A]
 gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
 gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
           [Bifidobacterium longum subsp. longum JDM301]
 gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
           NCC2705]
 gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
 gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
           52486]
 gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Bifidobacterium longum
           subsp. longum F8]
 gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
           [Bifidobacterium longum subsp. longum JDM301]
 gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
           BBMN68]
 gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
           [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G + ++   + V V G ++HLT  E+ ++  L+ R  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL         I TV G GY     
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKLGADT-----IRTVHGVGYAFEPP 238


>gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
 gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB
 gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae
           Rd KW20]
 gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
 gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
 gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
 gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21]
 gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
 gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory
           component QseB [Haemophilus influenzae R2866]
          Length = 221

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
 gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + YE   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        + +  + V+  ++TV + G  I LT  E++++      +   +++E  +N 
Sbjct: 124 AVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + I+  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTINSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
 gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
           23834]
          Length = 221

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A ++   LK   + V   + G   +       +D I+LDLGL    G 
Sbjct: 1   MRILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR +  +TPV IL+    +  ++ GL  GADDY+ KPF+  EL ARIRA++RR  
Sbjct: 61  DVLQQLRGSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG--HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A  L+  G L++N  A  VE+ G    + L+ KE+ ++E L  R  T L++    + +
Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           Y   +E E   ID  I  LRKK+     GK +I+ + G G++
Sbjct: 181 YGWGEEVESNAIDYLIHALRKKI-----GKEHIKNIRGVGWM 217


>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
           required for AvrXa21 activity R2 (raxR2) [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 84/217 (38%), Positives = 130/217 (59%), Gaps = 1/217 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  L  ++   LK E F V     GE+G+ + +   FD  I+DLGL  + G E+++
Sbjct: 1   MVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
           ALR      PV IL+  SS +DKV GL+ GADDY+ KPF+ EEL+AR+ A++RR+ G ++
Sbjct: 61  ALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSK 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
             +  G ++++L A+TV V G  + LT  EY+++E L +     ++K     H+Y    +
Sbjct: 121 PTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQQDFD 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +  +++VFI +LRKKL    G    IETV GRGY  
Sbjct: 181 RDSNVLEVFIGRLRKKLDPD-GELKPIETVRGRGYRF 216


>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
           [Streptococcus pyogenes]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIPTVRGMGYVIRE 227


>gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 241

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ + +  ++D +++D  L    G 
Sbjct: 16  MRLLIIEDDRESADYLVKAFREVGHIADLASDGEEGLAMAESGDYDVLVVDRMLPKRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 76  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+       DL ++  +  V   G  + L  +E++++E L       +T+ M L +++
Sbjct: 136 GPAEETSYRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 196 DYHFDPQTNVIDVHISRLRSKIDKGFDHP-LLHTIRGAGYMIRD 238


>gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+IL+++DDK +   + + +K+E +       G++ I +L    +   +ILD+ + ++ G
Sbjct: 1   MKILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ +R      P+ I+S  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MDVVKEVRKDS-QIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRS 119

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L++  D+  V  + G +I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QNEVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  IETVWG GY + 
Sbjct: 180 FERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227


>gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 226

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 109/220 (49%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIMLPGRDGMDI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 69  CKELRSFS-AVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +    L V+ +       G  + LT  E +++   +       +++  L+ LY   
Sbjct: 126 ATDPLAAKGLQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 186 RVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLE 225


>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
 gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
           amyloliquefaciens FZB42]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  + L +    D IILD+ +  + GFEV
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R      P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 64  SEAVRSF-TDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++          I TV G GY   
Sbjct: 183 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 222


>gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39]
 gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39]
          Length = 224

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  +     P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L    G +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225


>gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701]
 gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701]
          Length = 298

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  L   +   L  + + V     G   +   +F   D ++LDL L    G  +
Sbjct: 64  IWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLMLPGDDGLTL 123

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR +    PV +L+      D++ GL+ GADDY++KPF   EL+ARI A++RR    
Sbjct: 124 LRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRRGTM 183

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GD  ++L A+T+E Q   + +T  E+ ++       +  L++E  +
Sbjct: 184 PAGTPLADGELVHFGDNVLDLSARTLERQNQPVTITSGEFSLLAAFVQHPHRPLSRERLI 243

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   + + + +DV + ++R+ +        Y++TVWG GYV   + +
Sbjct: 244 ELARGPASDTDTRSMDVQVSRVRRLVEPDPSRPRYLQTVWGYGYVFVPDGQ 294


>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL   ADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGF 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G+L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G   IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRQ 223


>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
           DSM 9941]
 gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
           [Rubrobacter xylanophilus DSM 9941]
          Length = 231

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD AL     ++L SE + V   + G + +E     E D ++LD+ +  + GFE
Sbjct: 4   KILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R      PV +L+  S   DKV GL+ GADDYI+KPF+ +EL+ARI+AI+RR   
Sbjct: 64  VLKKIRERS-DVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G L ++ +A TV   G  + LT  E++++ LL  R     T+      
Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  G      + IDV I +LR K+         I+TV   GY 
Sbjct: 183 VSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225


>gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39]
 gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
 gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli]
 gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli]
 gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli]
 gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli]
 gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli]
 gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli]
 gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli]
 gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI39]
 gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15]
 gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           AA86]
 gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M605]
          Length = 222

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 239

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G       +  EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+EDKVRGL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  ++  + V + GH + L+ +E  ++E+L  R    ++K+  + HL  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+     G   I TV G GY L +
Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIE---VGPVRIATVRGLGYCLEK 220


>gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227]
 gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227]
 gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC
           796-83]
 gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           3594-74]
          Length = 222

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 126/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+     GK+ I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVANEEN 222


>gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
 gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae
           PB189-T1-4]
          Length = 236

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD ++     + LK+ N++V       D     K      I+LD+ L D  G  +
Sbjct: 4   IYVVEDDVSIQEIELIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNAI 63

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +L+  ++  D +RGL +GADDYI KPF+  EL++RIRA++RR++
Sbjct: 64  TRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 123

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ      S+   G + ++     V V    ++LT KEY ++  L L +    T++M 
Sbjct: 124 TPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRDML 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  ++    E E + +D+ I  LR+KL +AA    Y++TV G GY ++ N
Sbjct: 184 MQAVWGFDYEGESRTVDMHIKTLRQKLGDAAC---YVQTVRGVGYCVKSN 230


>gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8]
 gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +I  +L+ E ++V     G D +E     +   I++D+ +  + G   
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYSVVKAYDGIDALEKLAENDIQLILIDVMMPRMDGLSA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R  K + P+ +LS  S   DK+ GL  GADDYI+KP+N  EL AR+R+ +RR    
Sbjct: 68  IMKIR-DKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRRYMQL 126

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I  G L ++  AK + V G  + LT  E +++ELL        + E   
Sbjct: 127 GDIGSINKTDVIKIGGLELDKSAKQLTVDGEPVRLTATELKILELLMENAGRVFSAEDIY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +++         + V I  +R+K+        Y++ VWG GY + +N +
Sbjct: 187 RRVWNEDAYAVENTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKNKQ 237


>gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
 gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum
           DSM 5476]
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +  +L+ + F V     G +G      Y +D I+LDL L  I G E+
Sbjct: 6   ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLMLPGITGEEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + PV ++S  ++  DK+  L+ GADD+I KPF+ +E+ AR+ A +RR    
Sbjct: 66  IGEIRATK-TMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQF 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G + +L+   +L ++ DA  V V G  + LT +E+ ++ELL        T+      +
Sbjct: 125 SSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +   ++V +  LR KL+ A     YI+TVWG G+ + E
Sbjct: 185 WEEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKMAE 229


>gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
 gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM]
 gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC
           4796]
          Length = 238

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 86/237 (36%), Positives = 139/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALAQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +A G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DAPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 233

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L++ED+  LA  +   L+ + F V +   G + +   +  + D ++LDLGL  + G E
Sbjct: 5   RALVVEDEPELARLVGSYLERDGFAVTIVHDGLEAVARSREVDPDVVVLDLGLPGLDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       V +L+  S   D + GL  GADDY++KPF+  ELVAR++A++RR R 
Sbjct: 65  VCRRLRTFSDGY-VVMLTARSDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRP 123

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +  GDL++ L  + V ++   + LT  E+ ++  L+ R     ++   +
Sbjct: 124 LGHMDADAGEALSFGDLTIELAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLI 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      +  ++DV +  LR KL ++A    Y+ TV G GY +
Sbjct: 184 DAVWGPAWVGDEHLVDVHVGHLRHKLGDSAAEGRYVRTVRGIGYRM 229


>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
           KF147]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
            +L++ED+ +L+  ++  L  E++ V     G   +E+ +  +   D ++LD  +  + G
Sbjct: 4   HVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR ++  +  TP+  L+    I DKV GL +GADDYI+KPF  EEL+AR+R I R+ 
Sbjct: 64  LTVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +     L V+L A T EV G  ++LT +E+ ++      +   +++   L+ ++
Sbjct: 124 SNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +   +D ++  LR K+ +    K+ IETV G GY L
Sbjct: 184 GMDFDGQENTVDAYVRYLRAKI-DLPNHKSLIETVRGIGYRL 224


>gi|251778066|ref|ZP_04820986.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082381|gb|EES48271.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 14/228 (6%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+K +   I + L ++ +NV+    G +G+++         I+D+ +  +
Sbjct: 1   MKLYNVLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIMMPKM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++   LR +K   PV +LS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +R
Sbjct: 61  DGIQMTMKLR-SKFDFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLR 119

Query: 118 RSRG---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R               +  +   L +N + K V V    + LT  E++++ LL       
Sbjct: 120 RYSKYLNVINNLEEKNNNFIIDGLELNAETKEVFVDEESVKLTPIEFKILHLLIKNPGRV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
            + +     +++         + V +  +R+K+        Y++ VWG
Sbjct: 180 FSADEIYEKVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWG 226


>gi|148652012|ref|YP_001279105.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
 gi|148571096|gb|ABQ93155.1| two component transcriptional regulator, winged helix family
           [Psychrobacter sp. PRwf-1]
          Length = 238

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L     +V +   G   I      + D ++LD+ L    G  
Sbjct: 11  RILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     +P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 71  VCREVRP-HYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 122 HAQSLIV----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                I      G+L ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 130 APSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ +       I+TV  +GY+  +  
Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237


>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
           ruber DSM 13855]
 gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
 gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
           13855]
 gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
           [Salinibacter ruber M8]
          Length = 247

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL+ED+  +A  ++  L  E + V   + G  G++  +    D ++LD+ L D+ G E
Sbjct: 6   HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V   LR+ +   P+ +L+ + ++ED+VRGL++GADDY+ KPF  +EL+ARI A++RR  R
Sbjct: 66  VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L ++  A+T    G  + LT  E+ ++  L  R    L+++     ++ 
Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +IDV++  +R+KL    G +  IETV G GY 
Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEV-GCEAPIETVRGIGYR 224


>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 109/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +   +  + +  I+D+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V V    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222


>gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
 gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC
           11568]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A ++   L      V     G  G+   +   +D  ++D  +  + G 
Sbjct: 1   MRILVVEDDAEAATAMVRGLSEAGHEVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            ++  +R     TPV  LS +  +ED+V GL++G DDY+ KP+   ELVAR+ A+  RR 
Sbjct: 61  AMVETIRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV   G  I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+ +    K  ++TV G GY L 
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDKAMLQTVRGAGYRLE 222


>gi|330964376|gb|EGH64636.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  + + PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-NVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 218


>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
 gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
           Tu4000]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 13/228 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G E
Sbjct: 21  RVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQAQRP-LPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 242


>gi|167031289|ref|YP_001666520.1| osmolarity response regulator [Pseudomonas putida GB-1]
 gi|166857777|gb|ABY96184.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|313496610|gb|ADR57976.1| OmpR [Pseudomonas putida BIRD-1]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L +   F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR      P+ +L+       +++GL+ GADDY+ KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 SVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 234

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ LA      L+     V     G  G+E      ++A++LDL L    G EV
Sbjct: 9   VLLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLMLPGKDGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+      D+V GL+ GADDY++KPF+  EL+ARIRAIVRR+RG 
Sbjct: 69  CRELRARS-DVPVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRARGR 127

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A    S +  G L V+  A+ V + G  I LTG E+ +++ L+ R    L++E  +    
Sbjct: 128 AGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMELAG 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +E   + IDV + +LR+KL +       I+TV G GY+L    +
Sbjct: 188 GSAEEAFDRSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLLAAEGE 234


>gi|70730512|ref|YP_260253.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68344811|gb|AAY92417.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 224

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ L +   ++ +ILD+ L    G+
Sbjct: 1   MRILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  L        V +L+    +EDKV+GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  QVLEQL-QGNYPARVMMLTARGRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSE 119

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DL ++           RI LT KE+ ++ +L       LT+   ++ ++
Sbjct: 120 VIVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHVLMRHSGEVLTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ + A     I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSISRLRGKI-DDASDVKLIHTLRGVGYVLE 221


>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
           campestris]
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L    G +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225


>gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
 gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family
           [Chelativorans sp. BNC1]
          Length = 229

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++EDD+ L   +   L++E + V V   G++     +    D ++LD  +  I G E
Sbjct: 5   KIMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIE 64

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L  R      P+ +L+      D+VRGL +GADDY+ KPF+  E +AR+RA++RR+
Sbjct: 65  LCRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRA 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     +++  GD+ ++ +A  V  + + IHL   E++++E +        ++   L+++
Sbjct: 125 KPEVLSTVLKVGDIVLDREAHRVYRRKNEIHLGPTEFRLLEFMMQHPGRVFSRSQLLDNV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N     + I T+ G GY +REN
Sbjct: 185 WGETIYIDERTVDVHVGRLRKAV-NQGRMPDVIRTIRGAGYAIREN 229


>gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
           642]
 gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
 gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 6 str. 870]
 gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 5 str. 513]
 gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           suis bv. 3 str. 686]
 gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M163/99/10]
 gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis B2/94]
 gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M644/93/1]
 gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           ceti M13/05/1]
 gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 4 str. 292]
 gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           pinnipedialis M292/94/1]
 gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           neotomae 5K33]
 gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           melitensis bv. 3 str. Ether]
 gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 9 str. C68]
 gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
 gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
           suis 1330]
 gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
           [Brucella abortus bv. 1 str. 9-941]
 gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           canis ATCC 23365]
 gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           suis ATCC 23445]
 gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
           str. C68]
 gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
 gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
 gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
           B2/94]
 gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
 gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
           513]
 gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
           686]
 gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
           str. Ether]
 gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
           str. Rev.1]
 gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. NVSL 07-0026]
 gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           abortus bv. 5 str. B3196]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 227


>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +   +  +LK++ F       G + +E          ++DL + ++ G+E
Sbjct: 3   KIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +L+       KV+G ++G DDY++KPF+ +EL+ R++A++RR R 
Sbjct: 63  LCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYRI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   I  G ++++ ++ +V + G    +  KE++++  L      T T++  L  ++  
Sbjct: 123 EASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I +LR++      G   I TV G GY L 
Sbjct: 183 DFDGNERTLDVHIGRLRERFPAEKSGFK-ITTVRGLGYRLE 222


>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
 gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
          Length = 260

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
 gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family
           [Methylocella silvestris BL2]
          Length = 231

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A+ +    +           G +G    +  ++D +I+D  L  + G 
Sbjct: 5   MRILIVEDDSEAANYMAKAFREAGHVADHVGDGLEGYARAREEDYDVLIVDRMLPKLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  K+ TPV ILS +  ++D+V+GL++G DDY+SKP+   EL+AR+  + RR +
Sbjct: 65  SLIGGLRAQKVETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILARRKQ 124

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++   G L ++  A  V  +G  I L  +E++++E L       +T+ M L ++
Sbjct: 125 NGTGEETVYRVGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLLENV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   +P+  +IDV I +LR K+ +       ++T+ G GY++R+ ++
Sbjct: 185 WDYHFDPQTNVIDVHISRLRSKI-DKGFEPPLLQTIRGAGYMIRDGSR 231


>gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 222

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD   A  I    +   F       G DG+   K   FDA ++D+ L  + GF
Sbjct: 1   MRILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLPKLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR A +  P+ +LS   S+E K+ GL+ G DDY++KPF+  EL+AR+ A +RR+ 
Sbjct: 61  TVIEELRAAGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRRAS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A++  +   DL+++L ++ V   G RI L   EYQ++E L   K   ++K   + H++
Sbjct: 121 CAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIMEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +    I++  +C+LR+K+ +    +  I TV G GYVL 
Sbjct: 181 EYHFDTRTNIVESRVCRLREKI-DKPFARKLIRTVRGFGYVLE 222


>gi|33594423|ref|NP_882067.1| osmolarity response regulator [Bordetella pertussis Tohama I]
 gi|33597882|ref|NP_885525.1| osmolarity response regulator [Bordetella parapertussis 12822]
 gi|33602785|ref|NP_890345.1| osmolarity response regulator [Bordetella bronchiseptica RB50]
 gi|293603945|ref|ZP_06686359.1| transcriptional regulatory protein OmpR [Achromobacter piechaudii
           ATCC 43553]
 gi|3288064|emb|CAB09801.1| RisA protein [Bordetella bronchiseptica]
 gi|3288070|emb|CAA12131.1| RisA protein [Bordetella avium]
 gi|3288083|emb|CAA12132.1| RisA protein [Bordetella parapertussis]
 gi|3288101|emb|CAA12129.1| RisA protein [Bordetella pertussis]
 gi|33564498|emb|CAE43813.1| tresponse regulator protein [Bordetella pertussis Tohama I]
 gi|33574311|emb|CAE38644.1| tresponse regulator protein [Bordetella parapertussis]
 gi|33577227|emb|CAE35784.1| tresponse regulator protein [Bordetella bronchiseptica RB50]
 gi|292817638|gb|EFF76705.1| transcriptional regulatory protein OmpR [Achromobacter piechaudii
           ATCC 43553]
 gi|317401980|gb|EFV82581.1| response regulator protein [Achromobacter xylosoxidans C54]
 gi|332383834|gb|AEE68681.1| osmolarity response regulator [Bordetella pertussis CS]
          Length = 244

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 8/213 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV+V +  ++  +L +   FD ++LDL L    G  + R LR    +TP+ +L+ 
Sbjct: 30  SEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLTA 89

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
            +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G  
Sbjct: 90  KAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPY 149

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            +NL  +T+   G ++ +T  E+ ++++ +      L+++  +        E   + +DV
Sbjct: 150 VLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            I +LRK +        +I+TVWG GYV   + 
Sbjct: 210 QISRLRKLIEPNPSKPVFIQTVWGLGYVFVPDG 242


>gi|69246942|ref|ZP_00604197.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257878590|ref|ZP_05658243.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257883225|ref|ZP_05662878.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257891845|ref|ZP_05671498.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257894788|ref|ZP_05674441.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|258616966|ref|ZP_05714736.1| DNA-binding response regulator [Enterococcus faecium DO]
 gi|260558905|ref|ZP_05831093.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|261207266|ref|ZP_05921954.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289566153|ref|ZP_06446587.1| DNA-binding response regulator [Enterococcus faecium D344SRF]
 gi|293562898|ref|ZP_06677369.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1162]
 gi|294620288|ref|ZP_06699608.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1679]
 gi|314939253|ref|ZP_07846504.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|314942980|ref|ZP_07849787.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|314948581|ref|ZP_07851958.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
 gi|314952514|ref|ZP_07855514.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|314993100|ref|ZP_07858488.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|314995946|ref|ZP_07861027.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|68195015|gb|EAN09480.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Enterococcus faecium DO]
 gi|257812818|gb|EEV41576.1| transcriptional regulator [Enterococcus faecium 1,230,933]
 gi|257818883|gb|EEV46211.1| transcriptional regulator [Enterococcus faecium 1,231,502]
 gi|257828205|gb|EEV54831.1| transcriptional regulator [Enterococcus faecium 1,231,410]
 gi|257831167|gb|EEV57774.1| transcriptional regulator [Enterococcus faecium 1,231,408]
 gi|260075084|gb|EEW63398.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium C68]
 gi|260078481|gb|EEW66184.1| response regulator receiver:Transcriptional regulatory protein
           [Enterococcus faecium TC 6]
 gi|289162014|gb|EFD09880.1| DNA-binding response regulator [Enterococcus faecium D344SRF]
 gi|291593478|gb|EFF25032.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1679]
 gi|291605150|gb|EFF34613.1| transcriptional regulatory protein ResD [Enterococcus faecium
           E1162]
 gi|313589870|gb|EFR68715.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a01]
 gi|313592408|gb|EFR71253.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133B]
 gi|313595383|gb|EFR74228.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133A]
 gi|313598277|gb|EFR77122.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133C]
 gi|313641438|gb|EFS06018.1| response regulator receiver domain protein [Enterococcus faecium
           TX0133a04]
 gi|313644994|gb|EFS09574.1| response regulator receiver domain protein [Enterococcus faecium
           TX0082]
          Length = 238

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 67/238 (28%), Positives = 119/238 (50%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M IL+IED+++++  +++   +E +       G++G++        +D I LDL L  + 
Sbjct: 1   MNILMIEDNQSVSEMMQMFFLNEGWEATFKYDGKEGLDAFLENPQHWDMITLDLNLPTLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GMLVGREIRKVSSTVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRR 120

Query: 119 SRGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
           S                 I T    +N   +   +    I  LT KE+ ++  L+ +   
Sbjct: 121 SELAEAREEAVVSDDHFDIETSHFKMNTKTREAYLDNRPIEGLTPKEFDLLFTLAKKPRQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 VFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 236


>gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDPGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 225

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL  GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S I  G L ++L  K   V    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G D+ +  +I+V + +LR+KL    GGK+ IETV G+GY+  E
Sbjct: 181 GDDDRDPNVIEVLVGRLRRKLEAVLGGKS-IETVRGQGYMFNE 222


>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
 gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
           sp. BO1]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAVDPIRTVRGAGYSF 227


>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
           caldus ATCC 51756]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++DD  L   +   L+ ++F+V           + +   FD ++LD+ +    GFE
Sbjct: 5   RILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLEREFFDLLLLDVMMPGEDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               LR  +   P+ +L+    ++D+V+GL  GADDY++KPF  EELVARIRA++RRS+ 
Sbjct: 65  ACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLRRSQE 124

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   I  G   + LD +++     RI LT  E+ ++  L+     TL+++  + 
Sbjct: 125 PDMAKPSPGAIHFGPFRLALDTRSLWRGEERIPLTETEFSLLHALASHPWQTLSRDRLIQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +  G + P  + +DVFI +LR+ + +      Y++TVWGRGYV   +
Sbjct: 185 MIRAGDEVPGARGVDVFISRLRRLIEDDPATPRYLQTVWGRGYVFVPS 232


>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
 gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
          Length = 235

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L+S  +  Y    G +     K   +D I+LDL L    G  V
Sbjct: 10  ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVKDGITV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ ++RR    
Sbjct: 70  CKELRQFS-DIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYRP 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +     + ++  A  ++     + LT  E+++++ L+ +    LT++  ++HLYD  
Sbjct: 129 QDIVQNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL        +I +++G+GY     A
Sbjct: 189 RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWETQA 231


>gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
 gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus influenzae 10810]
          Length = 221

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O157:H7 EDL933]
 gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS)
           [Escherichia coli O157:H7 str. EDL933]
          Length = 240

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385]
 gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385]
          Length = 224

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
 gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +A  +++ L+ E F       G    E     +FD ++LD+ L  + G E
Sbjct: 6   RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + P+ +L+   ++ED+V GL  GADDY++KPF   EL+AR+   +RR   
Sbjct: 66  ICRRVREIS-NVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRDL 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G     +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  +
Sbjct: 125 AEGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E  ++DV+I  LR KL +    + YI TV G GYV+R+
Sbjct: 185 WGFDYTGETNVVDVYIRYLRAKL-DDRFHQKYIYTVRGVGYVVRD 228


>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
 gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
          Length = 223

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [butyrate-producing
           bacterium SSC/2]
 gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 235

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +  +I+  L+ E++ +     G + +++    E   +I+D+ +  + G  
Sbjct: 5   KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R +K + P+ ILS  +   DK+ GL  GADDYISKPF  +ELVAR+++ +RR   
Sbjct: 65  ATMKIRESK-NIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    +  I+ G L +++  K + V G  + LT  EY+++ LL        + + 
Sbjct: 124 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++         + V I ++R+K+   A    Y++ VWG GY + +
Sbjct: 184 IYERVWNEEAYATENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 233


>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 228

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 82/227 (36%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  L++ + L L+ E +   V + G +G++     ++DAI+LDL L ++ G E
Sbjct: 3   RILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR +K STP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRLRQSK-STPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDF 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   DL++  + + V      I LT +EY+++  L    N  L +++ L
Sbjct: 122 ENDNGTTKQTTVTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYESQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
 gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704]
          Length = 235

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  ++   E  L +      +   G   + L +   FD I+LDL L D  G+E
Sbjct: 5   RILIVEDDADISMIEEAYLNTAGLETKIVSEGSQVVPLLEKERFDLILLDLMLPDKSGYE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           + + +R  K+  P+ +++  +   DK+RG  +GADDYISKPF+  ELVAR+ A +R   R
Sbjct: 65  ICKEIR-DKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123

Query: 119 SRGHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           SR  A          IV GDL +  +   V      I    +E+++++ L++  N   +K
Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E     ++      +   + V I ++R+K+ + +     +ETVWG GY L +
Sbjct: 184 EQLFEKIWGYDYVGDSATVMVHINRIREKIEDDSRKPKILETVWGAGYRLNK 235


>gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
 gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
          Length = 239

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   ++ +L  E + N+      E+ IE  K    D ++LD+ +  + GFE
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 66  ACTEIR-NYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +            S +     + V G  +  + +  Q+++      +  L+K+     
Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +   + V I KLR+K+       +YI TV G GY    +
Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRFIPD 231


>gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40]
 gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           tomato T1]
 gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 246

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFSSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYVLSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046]
 gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046]
 gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G]
          Length = 222

 Score =  258 bits (660), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9]
 gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9]
          Length = 219

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +E  L+   FNV     G           +DA++LDLGL  + G 
Sbjct: 1   MRVLLVEDDPLLGDGLEAGLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLGLPKVSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   + TPV IL+   S+ED++RGL +GADDY+ KPF   E+VAR+RA++RRS 
Sbjct: 61  DVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLRALIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G L ++ +A+TV   G  + LT KE+Q++EL    K+  L + +    LY 
Sbjct: 121 GRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLPRALLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E +   ++V +  LRKKL     G   I TV G GY L E
Sbjct: 181 WAQELDSNALEVHVHHLRKKL-----GSQLIRTVRGVGYQLGE 218


>gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 224

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++          G   +E   F   + ++LD+ L    G E+
Sbjct: 2   IFCVEDDDNIRELVIYTLETTGLEARGFADGTAFMEALAFDTPELVLLDIMLPGEDGLEI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ L+ +      PV +++   S  DKV GL SGADDY++KPF   EL++RI+A++RRS 
Sbjct: 62  LKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIKAVLRRSG 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   ++ +  G +S++     V+V G ++ LT KE++++E L   +   LT++  L  ++
Sbjct: 122 KQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRDQLLTEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E + +DV I  LR+KL         ++TV G GY +   A
Sbjct: 182 GYDFDGETRTVDVHIRTLRQKLGEQGS---LVKTVRGVGYRIGGEA 224


>gi|258654371|ref|YP_003203527.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557596|gb|ACV80538.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 225

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F+  V   G   ++  +    D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFDTAVVRDGSKAVDAFRDVHPDLVLLDLMLPGVSGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  +   D V GL+SGADDY+ KPF  +EL ARIRA +RR+  
Sbjct: 64  VCKEIRAESG-IPIIMLTAKTDTVDVVLGLESGADDYVMKPFKPKELTARIRARLRRADV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   +   D+ +++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 GSAERLRVADVDIDVPGHQVTRDGEPISLTPLEFDLLVALARKPRQVFTREVLLEKVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEVVVTVRGVGYR 221


>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
 gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 228

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  +EL L+ E +   V   G  G+EL    ++DAI+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G+ Q+ +   DL++  + + V      I LT +EY+++  L    N  L ++  L
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 243

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGFE 61
           ILL+ED+  LA +IE  L+ E +   V   G   +E L +    DAI+LDL L DI G E
Sbjct: 13  ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  +     PV +++   +  D+V G + GADDY+ KPF+  EL+ RIRA++RR+
Sbjct: 73  ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A +  +I    L V+ +   V V    I LT  E++++     R+    T++  L+ 
Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++    +   + +D  + +LR+KL +A     Y+ET+ G GY  R+    E  E
Sbjct: 193 VWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFRDRPIGEPDE 243


>gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 226

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  IE  L++  F+  V + G  G+   +    D ++LDL L DI G E
Sbjct: 3   RILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VLR L+      + PV I+S      D+++GL+ GADDY+ KPF+  EL+ R++A++RR+
Sbjct: 63  VLRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRA 122

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G++ ++     V V+G  + LT  E++++  L  R     T+E+ L+ 
Sbjct: 123 DADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSD 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  + E   + +D  I +LR+KL  A    + IETV G GY L   
Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKLNPP 226


>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 245

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 22/240 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D+  +   I ++L+ E +++     G + +E+ +   FD IILD+ +  + G++
Sbjct: 5   RIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMPGMNGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R    + P+  LS      DK  G  SG DDY+ KPF+  ELV+R +A++RR + 
Sbjct: 65  TCLEIRKQS-NAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRRYQI 123

Query: 121 -------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
                                 +  +   DL ++ + + V  +G +I LT  EY M+ LL
Sbjct: 124 YKGKENSETVSEQVICTGNTQEKQRLHFHDLEIDEEQEAVYAEGRQIELTDTEYAMLHLL 183

Query: 162 SLRKNTTLTKEMFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              ++   + E     ++D          I V I  LRKK+   A     I+T+WG+GY 
Sbjct: 184 IKYRHQIFSAERLYEAVWDEPYYYGANNTIMVHIRNLRKKIEKDAKNPVLIKTIWGKGYR 243


>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 233

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +E       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKID-NTIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQRH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRRSNW 120

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    +    L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQQTNENNGSPTLEVDGLQLNPGRQEASFNGEALDLTGTEFTLLYLLAKHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRQDGHPWFKTLRGRGYLMV 230


>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 246

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 13/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ ++   +   L+   F+V     G++ ++       D  +LD+ L D+ GF +
Sbjct: 11  VLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFTI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV  L+    ++DK++GL  G DDYI+KPF+ EE+VARIRA++RR+   
Sbjct: 71  LRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPS 130

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL +N +   V   G  + L+  E++++  L +     ++K   L+H++D
Sbjct: 131 DADAAVLTYGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWD 190

Query: 181 GRDEPEVKIIDVFICKLRKKL-----------SNAAGGKNYIETVWGRGYVLR 222
                EV I++ +I  LR+K+             A      I T  G GYVLR
Sbjct: 191 YNWNGEVSIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGYVLR 243


>gi|56540679|gb|AAV92793.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWKDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 258

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 116/233 (49%), Gaps = 15/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-----YEFDAIILDLGLTDI 57
           +L+++D+  +   + L LK   F V     G   +              A++LDL L  +
Sbjct: 27  VLVVDDEADIRRLLRLYLKRAGFAVVEAGDGVSALAAFDALVRQGRAVAAVVLDLMLPGL 86

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   LR      P+ +L+    I +++ G   GADDY+ KPF+  E+VARIRA+ R
Sbjct: 87  DGWEVCERLRERS-QVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSR 145

Query: 118 RSRGH--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R+           A+  +  G L+++  A+TV V GH + LT  E+ ++  L+  +  TL
Sbjct: 146 RAAPAPGGVRPAGAEPALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTL 205

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L+ L  G    + ++ID  I  LR+KL    G +  I TVWG GY   
Sbjct: 206 SRQQILDRLRGGDYFGDERVIDSHIRNLREKLEP-FGLRKLIATVWGVGYRFE 257


>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 237

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 17/237 (7%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V 
Sbjct: 2   LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH- 122
           R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+    
Sbjct: 62  RVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPAL 121

Query: 123 ---------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                           +  I    L ++L A+ V      + LT  E++++ELL      
Sbjct: 122 AAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNAGI 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L      + ++     P  K + V++  LR+KL +       I TV G GYVLRE+
Sbjct: 182 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPDAPQLIHTVRGVGYVLRED 237


>gi|254974251|ref|ZP_05270723.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255091648|ref|ZP_05321126.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255313376|ref|ZP_05354959.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255516063|ref|ZP_05383739.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649160|ref|ZP_05396062.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260682337|ref|YP_003213622.1| two-component response regulator [Clostridium difficile CD196]
 gi|260685936|ref|YP_003217069.1| two-component response regulator [Clostridium difficile R20291]
 gi|306519270|ref|ZP_07405617.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260208500|emb|CBA61123.1| two-component response regulator [Clostridium difficile CD196]
 gi|260211952|emb|CBE02450.1| two-component response regulator [Clostridium difficile R20291]
          Length = 229

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 87/230 (37%), Positives = 126/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +   +   L SEN+ V     G   IE+ K Y FD I+LDL L    GF
Sbjct: 1   MDILLVEDDKNIREMVYDFLISENYFVKTAVDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVL+ +R   +  PV I +   S  DK+ GL  GADDYI+KPF+  EL+ARI+A +RR  
Sbjct: 61  EVLKYIRSVSV-VPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               SR     +I   DL +N+    V   G  ++LT  E+++++LL+  +    +KE  
Sbjct: 120 VYSSSRNSEDMVIQYKDLIINISKYVVSKNGIDLNLTHTEFEIVKLLATNQGRAFSKEQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            N ++         +++  I +LR KLS+     NYI+T+WG GY + E 
Sbjct: 180 YNTIWKEPYYGNENVLNTHINRLRNKLSDGIEKNNYIKTLWGIGYKMEEE 229


>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae Rd KW20]
 gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
           with phor (or crec) [Haemophilus influenzae F3031]
 gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
           [Haemophilus influenzae Rd KW20]
 gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 86-028NP]
 gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 22.1-21]
 gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 3655]
 gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittAA]
 gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittII]
 gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittGG]
 gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 7P49H1]
 gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae 6P18H1]
 gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae RdAW]
 gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae NT127]
 gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2866]
 gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3031]
          Length = 231

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I L L  + ++V      +  I   K      I+LD  L    G +
Sbjct: 4   KILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + P+ +L+  S+ ED +  L +GADDYI+KPF+ + L+ARI A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   +LS++ +A+ V  Q   I+L+  E++++           ++E  LN ++
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E + +D +I +LR+ L+     ++YI+TV G GY  
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEHYIQTVRGSGYRF 223


>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 219

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD++L   +   L  + + V     G    +  +   FD +ILD+GL  + GF
Sbjct: 1   MRILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R+ K   PV +L+   +IED++ GL +GADDY+ KPF  +EL AR+RA++RR+ 
Sbjct: 61  SVLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + I   ++ +  +A+ V ++   + LT +EY ++  L        T+++    LY 
Sbjct: 121 GRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D+ E   ++V I  +RKKL         + TV G GY+
Sbjct: 181 WGDDVESNTLEVHIHHIRKKL-----FSGLVRTVRGVGYI 215


>gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4]
          Length = 238

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 120/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   + L L+ E F++     G+  +   + ++ D  I+D+ + +I G+E+
Sbjct: 5   ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGYEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           ++ +R      P+ ILS  +   DK+ GL  GADD+ISKPF+  E++ARI+A +RR+   
Sbjct: 65  IKIVRKE-YKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYDF 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S     DL ++  +  ++ +GH I L+  EY++++L         TK+   
Sbjct: 124 NTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++      +   I V I +LR+K+ +      Y++T+ G GY   +  +
Sbjct: 184 ENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAKKEE 234


>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +        D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY +
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKI 221


>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 246

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  LA  +   L+ E + +     G   +   +    DA++LD+ L D  GF 
Sbjct: 20  RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGFA 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRAL   K    V  L+   ++ED+++G+ +G DDY++KPF+ EE+VAR+R ++RR+  
Sbjct: 80  VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRRAGL 139

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      +  GDL ++ DA+ V   G  I L+  E++++  L       L+K   L+ 
Sbjct: 140 ARQLDEGPRLTVGDLVMDEDAREVTRGGELIELSPTEFELLRFLMRNPRRVLSKAQILDR 199

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         +++++I  LRKK+   AG +  I TV G GYV++ 
Sbjct: 200 VWSYDFGGRAHVVELYISYLRKKV--DAGREPLIHTVRGAGYVIKP 243


>gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
 gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627]
          Length = 240

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYIRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDVEQSFIRAVYGVGYRWEADA 236


>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
 gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittHH]
          Length = 231

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I L L  + ++V      +  I   K      I+LD  L    G +
Sbjct: 4   KILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + P+ +L+  S+ ED +  L +GADDYI+KPF+ + L+ARI A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   +LS++ +A+ V  Q   I+L+  E++++           ++E  LN ++
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E + +D +I +LR+ L+     ++YI+TV G GY  
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEDYIQTVRGSGYRF 223


>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 228

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   +++E F+V     G++ +   +    D I+LD  L  + G EV
Sbjct: 7   VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEV 66

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L++   +   PV +LS  S   DKVRGL++GADDYI+KP++  EL+AR+R  +RR R
Sbjct: 67  CRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRVR 126

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D++++L    V   G  + L   E++++     R     ++E  L+ ++
Sbjct: 127 PSTVAERLEYEDIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLDRVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV + +LRK L     G + I TV G GY L
Sbjct: 187 GRDIYVDSRTVDVHVGRLRKALKVGEAG-DPIRTVRGAGYAL 227


>gi|54026584|ref|YP_120826.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018092|dbj|BAD59462.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 225

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD ALA  + ++L+ E F+ +V   G   +   +    D ++LDL L  + G +
Sbjct: 4   KILVVDDDMALAEMLTIVLRGEGFDPHVVGDGTQALAAVREIRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIVKPFKPKELVARVRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAELLSIADIVIDVPAHKVTRGGQQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKVEKDPENPEIVLTVRGVGYK 221


>gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
 gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583]
          Length = 221

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L H +   +++  +       GE+   L     +DA+ILD+GL  + G 
Sbjct: 1   MRILIVEDDRDLNHQLAETVRNAGYVSDSAFDGEEAYFLGSTESYDAVILDIGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+   R      P+ IL+      DKV G+ +GADDY+ KPF  EE++AR+RA++RR+ 
Sbjct: 61  RVVEKWRQDGHLMPILILTARDRWSDKVLGIDAGADDYVVKPFYLEEVMARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++     V V G  I LT  E++++  L    +  +++   + HLYD
Sbjct: 121 GHATSALSCGAVLLDTKTSRVFVDGQLIKLTSHEFRLLSYLMHHCDKVVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   I+VF+ +LRKKL        +IET+ G GY 
Sbjct: 181 QDFDRDSNTIEVFVRRLRKKLGVD-----FIETIRGMGYR 215


>gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
 gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional
           regulatory protein [Sinorhizobium fredii NGR234]
          Length = 233

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +    +           GE G+ +     +DA+++D  L    G 
Sbjct: 5   MKILIVEDDLEAAAYLAKAFREAGIVSDHASDGESGLFMASENAYDALVVDRMLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 65  SLISELRRRGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  A +V  QG  I L  +E++++E L       +T+ M L +++
Sbjct: 125 TPDQDMVYRVGDLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV + +LR K+         + TV G GY+++++
Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDF-EPPLLRTVRGAGYMIKDD 228


>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 226

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +   I L L+++ F       G + +   +  ++  +ILD+ +    G E 
Sbjct: 5   ILIVDDDKEIRDLISLYLEADRFYTDKAADGVEALIKLEEKKYSLVILDIMMPKKDGIET 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  +R  K   PV  L+  S   D + GL  GADDYISKPF+  EL+AR++A +RR    
Sbjct: 65  IIEIR-KKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTIL 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I  GDL +N +   V V+G+ + LT  EY+++E++   +N   T E     +
Sbjct: 124 NLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEFI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +       I V I KLR+K+   +    YI+TVWG GY +
Sbjct: 184 WKEKYSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGYKI 226


>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
           17982]
          Length = 225

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G + +        D ++LDLGL D+ G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATGAEAL--ADVRGVDLVVLDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  AREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQAAE 121

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +   D+ +++ A    V    + LT KE+ ++ +L     + + ++  +  ++  
Sbjct: 122 PVEGELRAQDIRMDVAAHRAFVGDVELSLTAKEFDLLRVLLREAGSVVARDTLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 K +D+ +  LR+KL + A   +YI TV G G+   ENA+
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRF-ENAR 225


>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 229

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  +++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L    G +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225


>gi|257455860|ref|ZP_05621080.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
 gi|257446745|gb|EEV21768.1| transcriptional activator protein CopR [Enhydrobacter aerosaccus
           SK60]
          Length = 244

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K L   I+  L    F V     G DG       +F  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S+I   DL +++  +TV      I LT KE+ +++    R+   L + +  + +
Sbjct: 121 QSDYKSSVIHIADLKMDIAKRTVYRGNTNIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   + +  +IDV I +LR K+ +       I TV G GY L  
Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDTKLIHTVRGMGYRLEP 224


>gi|237803881|ref|ZP_04591466.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331025861|gb|EGI05917.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 226

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYRVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   +++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVMSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKI-DLPYPVKLIHTVRGIGYV 218


>gi|73541062|ref|YP_295582.1| osmolarity response regulator [Ralstonia eutropha JMP134]
 gi|113867477|ref|YP_725966.1| osmolarity response regulator [Ralstonia eutropha H16]
 gi|194289493|ref|YP_002005400.1| osmolarity response regulator [Cupriavidus taiwanensis LMG 19424]
 gi|72118475|gb|AAZ60738.1| two component transcriptional regulator, winged helix family
           [Ralstonia eutropha JMP134]
 gi|113526253|emb|CAJ92598.1| response regulator, OmpR-family [Ralstonia eutropha H16]
 gi|193223328|emb|CAQ69333.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 240

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + F V V +      +L     FD ++LDL +    G  + R LR A   TP+ +L+  
Sbjct: 27  EQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAK 86

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +          GD  
Sbjct: 87  GEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRKGPAEVPGAPSETPETFAFGDFV 146

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+      I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 147 LNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQ 206

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +        +I+TVWG GYV   + 
Sbjct: 207 ISRLRKLIEPDPSNPRFIQTVWGLGYVFIPDG 238


>gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126]
 gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126]
          Length = 232

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++    + P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRLGEQPLELTVKSFELLWVLASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           ++      +   ++V I  LR+KL+         I+TVWG GY + + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQKLTKYTNSNAPAIKTVWGLGYKMEKP 228


>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 242

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL     G   I TV G GY     
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAFEPP 238


>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
          Length = 235

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  + + +  +L  E +     + G   + L +  + D IILD+ + ++ G+
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V R +R     TP+  LS      D+V GL+ GADDYISKPF   E+ ARI+ IVRR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +    GDL V  +         R+ L+ +E  ++  L   K   +T++M  
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++     P+ + +D  I KLRK +         I TV G GY  +  A+
Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYRYQGTAQ 231


>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 222

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPYDLIVLDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR++
Sbjct: 61  EVLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V  +G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GYV
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYV 216


>gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 246

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G D ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAGDGPDAVKLAKEFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLRYLMENPRRVVSKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKV--DAVHPPMIHTVRGAGYVIKP 244


>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
 gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
 gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
          Length = 260

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 256


>gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
 gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685]
          Length = 285

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G  G+       +DA+ILDL L  I G 
Sbjct: 67  MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 126

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 127 EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 186

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G ++++  + T  + G  + L  KE+ ++ELL       L + +    LY+
Sbjct: 187 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 246

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LR+KL +A     +I TV G GY L
Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 282


>gi|108798318|ref|YP_638515.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119867415|ref|YP_937367.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126433983|ref|YP_001069674.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108768737|gb|ABG07459.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119693504|gb|ABL90577.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126233783|gb|ABN97183.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 228

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVVGDGTQALSAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  GD+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAELLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
 gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14163]
 gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium symbiosum WAL-14673]
          Length = 230

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 10/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ +   +   L+   + V V   G +GI   +   +D I+LD+ L  I GF 
Sbjct: 3   KILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKIDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V   +R    + PV +++ +SS E++VRGL   ADDYI+KPF+   L+ +I A++RRS  
Sbjct: 63  VCELIRKES-NIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSGR 121

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      ++  DL ++LD     V G  + LT +E++++  L   +   +T+E+ L  
Sbjct: 122 GAKAGENQKLIYRDLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+        +++D  I  LR+KL        YIETV G GY +
Sbjct: 182 LWKYEFYGNDRVVDNHIKNLRRKLERD-----YIETVKGIGYRI 220


>gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus torques
           L2-14]
          Length = 231

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD+ +  +IE+ L  E + +     G + +E+ +  E + +I+D+ +  + G  
Sbjct: 3   KILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILEKEEVNLLIIDVMMPRLDGIR 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 63  ATLKIRE-KNSLPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRRFNE 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               ++   +++   G L +N D K V V G  + LT  EY ++ LL   +    +    
Sbjct: 122 LGGTAQEPKETIYKVGGLQINDDLKQVTVDGEFVKLTPIEYNILLLLMKNQGKVFSINQI 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 182 YESIWNEEAIGADNTVAVHIRHIREKIEINPKDPRYLKVVWGVGYKIEK 230


>gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 226

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 107/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 9   ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRTSAPQLILLDIMLPGRDGMDI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 69  CKELRSFS-AVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTS-- 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 126 AADPQAAKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 186 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 225


>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 232

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD A+   ++  L+ E + V  +  G +G+   +   FD +++D  L ++ G  
Sbjct: 4   KLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ ++S      DKV GLQ GADDYI+KPF+ EEL AR+ + +RR R 
Sbjct: 64  VCQNIRWES-DVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRR 121

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +       +       L+++   + V V    I LT KE+ ++ LL+   + T TKE   
Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            H++      +   + V I  LR+KL ++    N+I+TVWG+GY  
Sbjct: 182 QHIWQQATLEDTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGYRF 227


>gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 239

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 128/223 (57%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L++  + V     G       +  EFD +ILDLGL  + GF
Sbjct: 1   MRILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+EDKVRGL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  ++  + V + GH + L+ +E  ++E+L  R    ++K+  + HL  
Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+     G   I TV G GY L +
Sbjct: 181 WGEEVSTNAIEVYVHRLRKKIE---VGPVRIATVRGLGYCLEK 220


>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
 gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
           winged helix family [Thauera sp. MZ1T]
 gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
          Length = 228

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA  +   L   ++ V V   G +G  L     +D ++LD+ L  + GF
Sbjct: 1   MKILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VLR LR  K   PV +L+    +ED+V+GLQ+GADDY+ KPF   EL+AR++A++RR  
Sbjct: 61  AVLRELRRDK-HVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRRGA 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             + G   +++   DL ++L  +     G R+ LT KE+ ++ LL  R    L++     
Sbjct: 120 LPTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTALAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D   E    +++V + +LR KL +    K  + TV G GYVL +   
Sbjct: 180 QVWDMNFESNTNVVEVAVRRLRSKL-DDPFAKKLLHTVRGMGYVLEDREP 228


>gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 222

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L  +I+  LK   + V     G    +      + A +LDLGL  + G 
Sbjct: 1   MRILVIEDDALLGDAIQAGLKQSGYAVDWMKDGVSADQALSTEAYAAAVLDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+ M ++ED+++GL +GADDY+ KPF+  EL AR+RA++RR+ 
Sbjct: 61  EVLQRLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAARLRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +    + +   A  V  +   I L  KE+ ++  L L     L++      LY 
Sbjct: 121 GKPAPALQVAGVEMEPAAHRVLYRNSAIELPAKEFAVLHALMLNAGRVLSRTQIEEQLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   ++V+I  LR+KL         IET+ G GY++
Sbjct: 181 WGEEVESNAVEVYIHHLRRKL-----FPELIETIRGVGYLI 216


>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
           16992]
          Length = 242

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E 
Sbjct: 15  VLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPVMDGLEA 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR    
Sbjct: 75  TKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  
Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L  ++D  D    + +D  +  LR KL     G   I TV G GY     
Sbjct: 194 LEEVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAFEPP 238


>gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
 gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
          Length = 221

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 240

 Score =  258 bits (660), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLVDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|161507256|ref|YP_001577210.1| response regulator [Lactobacillus helveticus DPC 4571]
 gi|160348245|gb|ABX26919.1| Response regulator [Lactobacillus helveticus DPC 4571]
          Length = 240

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTT 168
                       + +  I T  L ++ D + V       + LT KE+ ++  ++ +    
Sbjct: 124 MMEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L+ ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLDLVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC
           BAA-613]
          Length = 231

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E F V     G + +E     E D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLDKNEVDLLIVDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    S P+ ILS  S   DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRRYTQL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     +   G L +N D K V V G  I LT  EY ++ LL        + +   
Sbjct: 123 GNLNQQADGQIYKCGGLQINDDNKEVTVDGDAIKLTPIEYNILLLLVKNAGKVFSIDEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 EQIWNEEAIGADNTVAVHIRHIREKIEINPREPKYLKVVWGVGYKIEKQ 231


>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
           Hxd3]
 gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
           [Desulfococcus oleovorans Hxd3]
          Length = 234

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           RIL+I+DDKAL   +    +  +  V     G DGI+        D ++LD+ L DI GF
Sbjct: 4   RILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L+ +R      PV +L+      D++ GL+ GADDY+ KPFN  EL+ARI+A++RR+ 
Sbjct: 64  ETLKKIRAIS-QVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122

Query: 121 GHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             A++          +V G + ++   + +   G  I +TG E  ++  L   K T LT+
Sbjct: 123 ASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  L+       E   + IDV I ++RKKL +      YI+TVWG+GY+  E
Sbjct: 183 DRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234


>gi|89074900|ref|ZP_01161350.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
 gi|89049297|gb|EAR54860.1| hypothetical DNA-binding response regulator [Photobacterium sp.
           SKA34]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   F V   + G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKVLVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ALR  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR   +V+R +
Sbjct: 61  KVLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQ 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S     DL +++ +  V      ++L  KE+ +++ L     + +++      +
Sbjct: 121 SSVNISSEYSYDDLRLDIKSHRVWRGSRLLNLQQKEFLLLQYLMEHAESVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G  + I TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEE-GGETSLIHTVRGAGYVLR 223


>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
 gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
 gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
 gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
 gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS
Sbjct: 61  FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|295398157|ref|ZP_06808206.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973676|gb|EFG49454.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 227

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+ +DDK +   + +   +E++ V     G++ ++      +   ++LD+ +    G
Sbjct: 1   MKILITDDDKEIVELLTIYATNEDYEVIQAFDGDEALKKIAENPDIAMMVLDIMMPGKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             V++ LR   +  P+ +LS  SS  DK+ GL +GADDY++KPFN  E++ARI++++RR 
Sbjct: 61  ITVIKELRKRDVDMPILLLSAKSSDMDKISGLTTGADDYVTKPFNPLEVMARIKSLLRRA 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + G   + I  G L +N ++  V    G +I LT  E+ ++ LL+   N   + +    
Sbjct: 121 STAGDDSATIEVGPLVINKNSHEVKTTDGQQIQLTALEFGILYLLASNPNNVFSADEIFE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        K + V +  LR K+  A GG   I TVWG GY +
Sbjct: 181 RVWQQESVVSAKTVMVHVSHLRDKIGEATGGDKVISTVWGVGYKI 225


>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
           [uncultured prokaryote AT5]
          Length = 234

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 6/228 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED++AL   +   L++E + V     G++   L K    D +ILD  L  + 
Sbjct: 2   MKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGLS 61

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G E+ R LR    +   P+ +L+      ++VRGL +GADDYI KPF+  EL AR+RA++
Sbjct: 62  GIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALL 121

Query: 117 RRSRGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+       ++  GDL V+ + K V   G  + L   EY+++E L  R     ++E  L
Sbjct: 122 RRALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N ++  +   + + +DV + +LRK L N     + I TV G GY L +
Sbjct: 182 NGVWGSQIYIDERTVDVHVGRLRKAL-NRGHETDPIRTVRGAGYALDD 228


>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 234

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +L+   F     D  +  I          I+LD  +    G +
Sbjct: 9   RILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGSGIQ 68

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           ++  ++  +   + P+ +L+     ED+VRGL+ GADDY++KPF+ +EL+AR+ AI+RR 
Sbjct: 69  LIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILRRV 128

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   + ++I    L ++  +  V      I +   EY+++            +E  LN++
Sbjct: 129 SAMASDNVIEMNGLKLDPASHRVMSDATSIEMGPTEYKLLYFFMTHPERVYNREQLLNYV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L    G +  I+TV G GY  
Sbjct: 189 WGVNVYIEDRTVDVHIRRLRKAL-AVGGHEKMIQTVRGTGYRF 230


>gi|320322852|gb|EFW78943.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 128/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + + V V   G +G+ L    +   IILD+ L  + GF
Sbjct: 1   MRVLIIEDEEKTADYLRRGLTEQGYAVDVERDGIEGLHLALENDHAIIILDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    ++D++RGL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH    I   DL ++L ++     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 GHEPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDTNVVEVAIKRLRAKL-DGPHEHKLLHTIRGMGYVLE 220


>gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21]
 gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21]
          Length = 224

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  ALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTCNKLRFADLELCLSTMRVYRADQPIELTAKEISILELFLRKPGHIFSRERILANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   I+DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNIVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
 gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium HTCC5015]
          Length = 236

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+   I   L+ E ++        +  +       D +++D  L    G E
Sbjct: 14  RILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGTSGVE 73

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +R  +  +     PV +L+  +  +DK+ GL +GADDY+SKPF+  EL+ARIRA++RR 
Sbjct: 74  FVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRI 133

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  G L++++D+  V      + L   EY++++      +   ++   L+H++
Sbjct: 134 GSADGQLLEVGGLAMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LRK L+   G    ++TV G GY  
Sbjct: 194 GRSAFVEERTVDVHVLRLRKALAPY-GCDKLVQTVRGAGYRF 234


>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34]
 gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34]
          Length = 219

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEVTLGEQIIAGLEHSGWVAELSCDGIDALYRATSEPWDAIVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   ++ PV ILS  + +  +V GL +GADDY++KPF   ELVAR+RA +RRS 
Sbjct: 61  TVLKGIREENVNCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I  G+LS++     V  +G  I LT  E++++  L    +  +++   + H+Y 
Sbjct: 121 GNASPVIQAGNLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++R+K+ N       I+TV G GY +
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRI 216


>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
 gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
           WAL-14163]
 gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
          Length = 246

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 16/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDDK +   IE+ L+ + + V+    G +G+E+ +  E    I+D+ +  + G  
Sbjct: 11  RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIMMPRMDGVT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR      PV  LS  S   DK+ GL  GADDYI+KPF   EL+AR+ + +RR   
Sbjct: 71  MVIRLRE-HYDFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYNR 129

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                        G   ++   G L +N D   + V G    LT  E++++ LL      
Sbjct: 130 FMALLNRKEEKDGGENSNIYRIGGLELNEDTVELMVDGEPAKLTPMEFKILSLLMKNPGH 189

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + +     +++ R       + V +  +R+K+        Y++ VWG GY + +
Sbjct: 190 VFSADDIYERVWNER-AINTDTVMVHVRNIREKIELDPKKPKYLKVVWGVGYKIEK 244


>gi|299139571|ref|ZP_07032745.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598499|gb|EFI54663.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  +   ++  L    + V+  + G    EL   + +  +I+DLGL D  G 
Sbjct: 1   MRLLLVEDEPEIQSFVKQSLMEAGYEVHTAEDGSAATELASKHVYHGLIVDLGLPDQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR + +++PV ILS   S++D+V+GL+ G DDY++KPF   EL+AR+R ++RR+ 
Sbjct: 61  DLILQLRRSGVTSPVLILSARRSVDDRVKGLELGGDDYLTKPFAIAELLARMRNLLRRNS 120

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A+    +   DL +++  +        ++L+ +E+ ++E L       +T+ M L  +
Sbjct: 121 SQAEDAMRLRVCDLELDMLKRRATRGDEVLNLSPQEFVLLEYLCRHAGRVVTRSMLLKEV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  R +P+  ++DV I +LR K+  A      I+T+ G GYVL+
Sbjct: 181 WGMRIQPDTNVVDVHIYRLRGKIDTAGREP-LIKTLRGIGYVLK 223


>gi|307730902|ref|YP_003908126.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307585437|gb|ADN58835.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 280

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   +    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|271962953|ref|YP_003337149.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506128|gb|ACZ84406.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F       G+  ++  +    D ++LDL L    G +
Sbjct: 4   RVLVVDDDAALAEMLGIVLRGEGFEPSFVSDGDKALDAFRDTRPDLVLLDLMLPGADGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRRIRAESG-VPIVMLTAKSDTIDVVLGLESGADDYIVKPFKPKELVARVRARLRRTDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+++++   +V+     I+LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 PTPEILQIGDITIDVAGHSVKRDEETINLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221


>gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
 gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 245

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAARP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
 gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB056]
 gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB058]
 gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB059]
 gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
 gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter baumannii AYE]
 gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
           [Acinetobacter baumannii AB0057]
 gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
           AB307-0294]
 gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013150]
 gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
           6013113]
          Length = 228

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LAH +   L++  F V +   G+D     +  + + +ILDL +  + G
Sbjct: 1   MKHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K++  A       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFE 224


>gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 227

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   I  PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
             DE E   ++V I  LR+KL N+      +ETV G GY L    A +E  
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNS-----IVETVRGLGYRLGPAQAPEEAA 226


>gi|294341285|emb|CAZ89694.1| Transcriptional regulatory protein cusR [Thiomonas sp. 3As]
          Length = 251

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L+   F V     G DG        +D I+LD+ L DI G+
Sbjct: 25  MKLLIVEDEVKTGEYLQQGLRESGFVVDWARNGLDGHHHAMIAPYDLIVLDVMLPDIDGW 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR+LR +  +TPV  L+   ++ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR R
Sbjct: 85  RILRSLRESGNNTPVLFLTARDAVEDRVKGLELGADDYLVKPFVFTELLARVRTLLRRGR 144

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +   DL ++L  +     G RI+L+ KE+ ++ELL  R+   L + +  + ++
Sbjct: 145 APTQIDQLEVADLVLDLPRRRATRAGTRINLSSKEFALLELLIRRQGEVLPRSLIASQVW 204

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +       I+TV G GY L
Sbjct: 205 DMNFDSDTNVIDVAIRRLRAKV-DDGFEPKLIQTVRGMGYTL 245


>gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 219

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILRDWREQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N   +   + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLSE 218


>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
           J2-003]
          Length = 225

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 231

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+++LA  I+  L+ E + V     G++G+EL +  +   I+LD  L    G  
Sbjct: 5   KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPVYDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R      P+ +L+  +   D    L  G DDY++KPF  EEL ARIR I+RR   
Sbjct: 65  VLRRIRKVS-DIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R    S +    L ++L +     +G  I+LT KEY ++  L        +++  L+ 
Sbjct: 124 EKRQVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +   +DV+I  LR KL      +N I+TV G GY LR+   +E
Sbjct: 184 VWGYDFVGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDNNE 231


>gi|91223230|ref|ZP_01258496.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
 gi|91192043|gb|EAS78306.1| putative two-component response regulator [Vibrio alginolyticus
           12G01]
          Length = 243

 Score =  257 bits (659), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKTQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEAKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQP 241


>gi|254517714|ref|ZP_05129770.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911463|gb|EEH96664.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 241

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+K ++  ++L L+ E + V + + G+   +L +   +D +ILD+ + +  G+ 
Sbjct: 22  KILVAEDEKQISKVMKLYLEKEGYEVTLANDGKVAEDLIENNTYDLVILDIMMPNKDGWY 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ ++     T V I S     ED++ G + GADDY+ KP +  ELV R+   +   + 
Sbjct: 82  LLKKVKSLNNKTQVIITSARGEEEDRIFGFELGADDYMVKPISMRELVLRVGLRINSVKN 141

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G+L V+ + + V      I LT KEY ++  L   KN   T+E  +  ++  
Sbjct: 142 EYTKEIKLGNLRVDDNNRRVFENEKEIILTPKEYDLLMFLIKNKNRVFTREDLITSVWGY 201

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + +D  + KLR+KL      +  ++TVW  GY L
Sbjct: 202 DFYGDTRTVDTHVKKLREKLE---FFRENLKTVWRVGYSL 238


>gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
          Length = 232

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGGGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRT 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 AATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +  
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRAKIDRGFEHP-MIHTVRGAGYVIRADEP 229


>gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6]
 gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6]
          Length = 234

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK     +   L+ E   V +   G +G+      ++D ++LD  L D+ G  
Sbjct: 12  KILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRMLPDLDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++ LR A   TP  +L+ +S + D++ GL++GADDY+ KPF   EL AR+ A+ RR   
Sbjct: 72  LIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPGL 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  GDL ++L    V   G  I L  +E+ ++E L  RK    T+ M L  ++D
Sbjct: 132 QQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVWD 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P+  +++  I +LR K+ +       IETV G GY +
Sbjct: 192 ITFDPQTNVVETHISRLRAKV-DRPFDNELIETVRGAGYRI 231


>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
 gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. CCS2]
          Length = 228

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+ A    +   L++E F V   + G++G+   +    D I+LD  + ++ G E
Sbjct: 6   HVLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIE 65

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L++     S P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 66  VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRV 125

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++   D+ ++ +   V    + + L   E++++     +     +++M L+ +
Sbjct: 126 RPATVGQVLTYEDIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L+   GG + + TV G GY L
Sbjct: 186 WGRDIYVDTRTVDVHVGRLRKVLTQH-GGSDPVRTVRGAGYAL 227


>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 228

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIMLPELDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A     +  + +  + V+  ++TV + G  I+LT  E++++  L   +   +++E  +N 
Sbjct: 124 AVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|119471571|ref|ZP_01613985.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
 gi|119445514|gb|EAW26800.1| response regulator (activator) in two-component regulatory
           [Alteromonadales bacterium TW-7]
          Length = 230

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 121/228 (53%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD  L    +  L+     V V + G++     +    D +ILD+ L    GF 
Sbjct: 3   KILLVEDDLGLQQLTKDYLEHNGLEVAVLERGDEVFGYLENNHADLMILDVMLPGKDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K S P+ +L+  S   D+V GL+ GADDY+ KP     L+AR+ A++RR + 
Sbjct: 63  VCRQVR-DKFSLPILMLTAKSEDFDQVLGLELGADDYVIKPAEPRVLLARVNALLRRGQT 121

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GDL ++  ++ V++    I LT  E++++ LL+      L++E    H+ 
Sbjct: 122 VTKTSEELQFGDLIIDKTSRIVQLSDKEIVLTSHEFELLWLLASNAGQVLSREHVHQHMI 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + +   + +DV + ++RKKL + +     I+TVWG+GY+   +A D
Sbjct: 182 GRQYDGLDRTVDVRVSRIRKKLGDNSDKPFRIKTVWGQGYLFVSDAWD 229


>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL ++     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGDSG---EYIKTIYGVGYKL 221


>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 226

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A++  +   L  E + V  +  G + +        D ++LDLGL D+ G +
Sbjct: 3   RVLLVEDDPAISEPLARALGREGYEVLASSTGREALT--NVEGADLVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 61  VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRHTA 120

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+S +   D+ V++ A         + LT KE+ ++ +L     + + ++  +  ++ 
Sbjct: 121 EPAESELRAQDIRVDVAAHRAFSGSTELQLTAKEFDLLRVLLREAGSVVERDELMREVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  K +D+ +  LR+KL + A   +YI TV G G+   
Sbjct: 181 SDPTGSTKTLDMHVSWLRRKLGDEASDPHYITTVRGMGFRFE 222


>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
 gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
           [Thalassiobium sp. R2A62]
          Length = 229

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+ A    +   L++E F V + + GE+ + L      D I+LD  L ++ G E
Sbjct: 7   QVLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIE 66

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R  +   A  + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R  +RR 
Sbjct: 67  VCRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRV 126

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++V GD++++ +   V    H I L   E++++     +     ++++ L+ +
Sbjct: 127 RPTTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK L N  GG + + T+ G GY L
Sbjct: 187 WGREIYVDTRTVDVHVGRLRKAL-NQFGGDDPLRTIRGAGYAL 228


>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 223

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 125/225 (55%), Gaps = 7/225 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   I   L  + FN++    GE+G+      + D IILD+ +  + 
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+L  LR    + PV  L+     EDK+ G Q GADDY++KPF+ + LVA+++A+++R
Sbjct: 61  GLEMLEKLREVS-NVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKR 119

Query: 119 SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R    S I     LSVN  +  V+V    I L+ KEY+++  L   ++  L+++  L++
Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  I +LR+KL + +    YI TV G GY   
Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSS---YIVTVRGSGYKFE 221


>gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
 gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii
           ATCC 33638]
          Length = 219

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD+ L   I + L S  +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDELLQRGIAMALTSAGYPCDCAGTAAEAHSLLITSQYSMVILDLGLPDQDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   ++ PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  VLLRQWRREHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   DLS+NL  + V +QG  + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D+     ++V I  LR+KL     GK+ I TV G GY L 
Sbjct: 181 WNDDLGSNTLEVHIHNLRRKL-----GKDRIRTVRGIGYRLE 217


>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
 gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
           [Dictyoglomus turgidum DSM 6724]
          Length = 220

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ ++H +EL L  E   V V   G D +   + ++ D +ILD+ L  + G 
Sbjct: 1   MKILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLPGLSGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR       + +L+ +  ++DKV   + GADDY+ KPF+ EEL+ARI+A+ RR +
Sbjct: 61  EVAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    + + +D   V + G  + L+  E+ ++ LL   +N  L+KE  L+ ++ 
Sbjct: 120 EKKEEIISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+    +++V+I  LRKKL        YI+T+ G GY  R++
Sbjct: 180 DYDDERENLVEVYINYLRKKLGERG---KYIKTIRGVGYSFRKD 220


>gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 EDL933]
 gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. Sakai]
 gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536]
 gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           E24377A]
 gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS]
 gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC
           8739]
 gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           SMS-3-5]
 gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. EC4024]
 gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1]
 gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989]
 gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           UMN026]
 gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. TW14359]
 gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp.
           4_1_40B]
 gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O157:H7 str. FRIK966]
 gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185]
 gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088]
 gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302]
 gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736]
 gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system
           member [Escherichia coli O157:H7 str. EDL933]
 gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli O157:H7 str. Sakai]
 gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli]
 gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli]
 gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli]
 gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli]
 gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli]
 gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli]
 gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli]
 gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli]
 gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli]
 gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli]
 gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli]
 gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli]
 gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli]
 gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli]
 gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli]
 gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli]
 gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli]
 gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli]
 gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli]
 gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli]
 gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli]
 gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli]
 gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli]
 gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli]
 gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli]
 gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli]
 gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli]
 gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli]
 gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli]
 gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli]
 gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli]
 gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli]
 gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli]
 gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli]
 gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli]
 gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli]
 gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli]
 gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli]
 gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536]
 gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS]
 gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A]
 gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5]
 gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638]
 gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC869]
 gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC508]
 gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A]
 gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11]
 gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22]
 gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019]
 gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171]
 gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1]
 gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           EC4115]
 gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia
           coli]
 gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli 55989]
 gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli IAI1]
 gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli UMN026]
 gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43]
 gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli BL21(DE3)]
 gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli O157:H7 str. TW14359]
 gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O26:H11 str. 11368]
 gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O103:H2 str. 12009]
 gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory
           system with BasS [Escherichia coli O111:H- str. 11128]
 gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str.
           CB9615]
 gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088]
 gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           FVEC1412]
 gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185]
 gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354]
 gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302]
 gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1827-70]
 gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli W]
 gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           3431]
 gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae
           CDC 74-1112]
 gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. EC1212]
 gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           EC4100B]
 gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. G5101]
 gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. 493-89]
 gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H- str. H 2687]
 gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           EPECa14]
 gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           E128010]
 gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           LT-68]
 gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1180]
 gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           1357]
 gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli
           O157:H7 str. 1044]
 gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H736]
 gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           M718]
 gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA143]
 gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA271]
 gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H591]
 gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           H299]
 gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii
           5216-82]
 gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88]
          Length = 222

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 225

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  +LK  N+ V     GE G++      +D IILD+ L  + G 
Sbjct: 1   MRILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  +I+TPV +L+    I DKV GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKG 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +  GD+ ++     +      + LT KE +++E L LRKN   +KE+ +  L+
Sbjct: 121 DILPDSSLKYGDIELDALNLKLSKDSKDVKLTLKESELLEFLMLRKNIVTSKELIIEKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E   ++V+I  LRKKLS     K  I TV G GY+L 
Sbjct: 181 GFDSEVEPNNVEVYISFLRKKLS-FLNSKVSIVTVRGVGYILE 222


>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
 gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
          Length = 225

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V   + G +   + +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  +ELV RIRA++RRS
Sbjct: 61  FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
 gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
          Length = 245

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 13/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   +E  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+      D + GL  GADDY++KPF+  E+ AR+  ++RR   
Sbjct: 80  VCRRV-QAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L V+   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPA 244


>gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
          Length = 240

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKNILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
 gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family
           protein [marine actinobacterium PHSC20C1]
          Length = 241

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 9/236 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIP- 58
           M++L+IEDD  LA  I   L    +  +V      GIE  +    +D ++LDL L  +  
Sbjct: 1   MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60

Query: 59  ------GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
                 G  V R +R    + P+ +L+ +  +  KV GL +GADDY+ KPF+  EL+AR+
Sbjct: 61  AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA++RRS      ++    ++++   +T E  G RI LT KE+ ++E L       ++  
Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++H +D   E    ++  +I  LR+KL  A G  + IET  G GYV+ ++   E
Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKL-TAGGEPDVIETRRGSGYVIEQSEPVE 235


>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 242

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  L   +   L  + + V   + G+      +F   D ++LDL +    G  +
Sbjct: 7   IWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPGDDGLTI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +L+      D++ GL+ GADDY++KPF   EL ARI A++RR    
Sbjct: 67  LRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVLRRRGAV 126

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +I  G+ S++L A+T+E  G  + +T  E+ ++       +  L++E  +
Sbjct: 127 PAGTPVADGEVIGFGNNSLDLSARTLERDGEPVVITSGEFGLLAAFVQNPHRPLSRERLI 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   E + + +DV + ++RK +        Y++TVWG GYV   + +
Sbjct: 187 ELARGPSSETDSRSMDVQVSRVRKLIEPDPSRPRYLQTVWGYGYVFVPDGE 237


>gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756]
 gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator
           [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 224

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++          G    E   F   + I+LD+ L    G E+
Sbjct: 2   IYCVEDDDNIRELVIYTLETTGLKARGFADGSAFTEALAFETPELILLDIMLPGEDGLEI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +  +   PV +++   S  DKV GL SGADDY++KPF   ELV+RI+A++RRS+
Sbjct: 62  LKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLRRSK 121

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  +        + +++    V V G  + LT KE++++E L   +   LT++  L  ++
Sbjct: 122 GSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRDQLLTEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E + +DV I  LR+KL         I+TV G GY +  +A
Sbjct: 182 GYDFDGETRTVDVHIRTLRQKLGEKG---EIIQTVRGVGYRIGGSA 224


>gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 238

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K L+  +EL L+ EN+   V + G  G+E     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLSRFVELELQHENYETVVENNGRKGLEDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DTPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|237745658|ref|ZP_04576138.1| oxidative stress resistance two-components response regulator
           [Oxalobacter formigenes HOxBLS]
 gi|229377009|gb|EEO27100.1| oxidative stress resistance two-components response regulator
           [Oxalobacter formigenes HOxBLS]
          Length = 253

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 8/214 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L    F V   +  +          FD ++LDL L    G  + R LR    +TP+ +L
Sbjct: 32  YLAEHGFAVTTAENAQTMNRFWMRERFDLLVLDLMLPGEDGLSICRRLRGGGDTTPIIML 91

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTG 130
           +      D++ GL+ GADDY+ KPFN  EL+ARI A++RR        S    Q +   G
Sbjct: 92  TAKGEDTDRIVGLEMGADDYLPKPFNPRELLARIGAVLRRRHPGEIPGSPSETQQVFHFG 151

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           +  ++L  +T+   G  I LT  E+ +++  +      L+++  ++       E   + +
Sbjct: 152 EFQLDLGNRTLRKNGENISLTTGEFAVLKAFASHARQPLSRDKLMSLAKGREYEVFDRSL 211

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           DV I +LRK +        YI+TVWG GYV   +
Sbjct: 212 DVQISRLRKLIEPDPSHPLYIQTVWGLGYVFIPD 245


>gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli
           STEC_7v]
          Length = 222

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685]
 gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685]
          Length = 220

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   +   +  EN+         +   L +  ++  IILDLGL D+ G 
Sbjct: 1   MKILIVEDDTLIQQGLAQAMGRENYACDCAGSAAEANGLLQSGQYSLIILDLGLPDMDGG 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I+TPV IL+   ++ ++V GL +GADDY+ KPF   EL+AR RA++RR +
Sbjct: 61  SALRQWRRDGIATPVLILTARDTVGERVAGLDAGADDYLVKPFALAELLARTRALIRRMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++   ++ ++L    V      + +T KE+ ++  L  R   T+++E+    LY 
Sbjct: 121 GLCDNILQVDNIRLDLSNHQVSCNNQALEVTPKEFTILARLMTRAGQTISREVLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +DE     ++V I  LR+KL     G+  I+T+ G GY L +
Sbjct: 181 WQDELSSNSLEVHIHNLRRKL-----GRERIKTLRGVGYRLEK 218


>gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
 gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC
           25986]
          Length = 250

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 7/238 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +       L+ +           +          DA++LD+ L D  G  +
Sbjct: 10  IYYVEDDDNIRDLTVYALRKQGIEAEGFSCDGEFKAAVARRVPDAVLLDIMLPDTDGLAI 69

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +   + P+ +L+   +  DKV  L  GADDY++KPF+  EL +R RA++RR  
Sbjct: 70  MRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLRRGG 129

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  ++  GD+ ++   + V V G  + LT +E+ ++E L  +     T+E  L  +
Sbjct: 130 MVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLLQSV 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           +    +   + +DV +  LR+KL   A     IETV G GY L E +  +  E  +TA
Sbjct: 190 WGWDFDGGSRTVDVHVQTLRQKLGEHASA---IETVRGVGYRLAEPSAGDGAEGDDTA 244


>gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130]
 gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130]
          Length = 216

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L   +   L+  ++ V     GE+G  L     +DA+ILD+GL ++ G 
Sbjct: 1   MRILVVEDDRDLNRQLVSALEEASYVVDSASDGEEGHFLGDTEPYDAVILDVGLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    S PV +L+      DKV G+ +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLEKWRRGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + I  G + ++     V + G  + LT  E++++  L   K   +++   + HLYD
Sbjct: 121 GHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   I+VF+ +LRKKL       + IETV G GY 
Sbjct: 181 QDFDKDSNTIEVFVGRLRKKL-----HSDVIETVRGLGYR 215


>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 233

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 121/219 (55%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  I L+L  E FN    + G    E       D ++LDL L  + G EV
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIR  + R R  
Sbjct: 69  CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++  GD+ +++D +TV+     + +T  E+ ++  L       L+++  L+ ++   
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  +  +++V + +LR K     G   +I+TV G GY +
Sbjct: 187 DVSDS-LVNVHVQRLRAKFDEL-GADRFIQTVRGVGYKI 223


>gi|78188413|ref|YP_378751.1| two component transcriptional regulator [Chlorobium chlorochromatii
           CaD3]
 gi|78170612|gb|ABB27708.1| two component transcriptional regulator, winged helix family
           [Chlorobium chlorochromatii CaD3]
          Length = 253

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +E  L    +  ++    E  +       F  ++LD+ L  + GFE+
Sbjct: 23  LLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVMLPGMDGFEL 82

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R        P+ +++      D++ G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 83  CRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILKRER 142

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G AQ ++ TG L V+L    V + G  + LT  E++++  L  RK    ++E  L+ 
Sbjct: 143 RQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETLLSD 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           ++D       + ID  I ++R+KL N       I+TV G GY L     ++  
Sbjct: 203 VWDIDKSISTRTIDTHITRIREKLGNYGA---LIKTVRGLGYRLEPQEDEQHA 252


>gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 270

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|311033146|ref|ZP_07711236.1| two-component response regulator; MrsR2 protein [Bacillus sp.
           m3-13]
          Length = 236

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D+K L   I+  L  E F  + +      G      +  + +ILD+ L D  G+
Sbjct: 5   RILIVDDEKDLCTLIKTALIKEGFSEIRIAGTVNQGWNEFNDFHPNIVILDVMLPDGEGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R      PV  LS  +   DK+ GL  G DDYISKPF+ +E+  R++A +RR  
Sbjct: 65  DLCKKIREIS-RVPVLFLSAKTEEVDKILGLAIGGDDYISKPFSPKEVAFRVKAQLRRAG 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +    + +I  G  S+N +   V   G  + LT KE  ++       N  ++K
Sbjct: 124 YSTVGASTSNKNEKVISVGSFSINHEETEVMKDGKMLELTAKEVGLMACFMRNPNHIISK 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E   N ++          + V I +LR+K+ +      YI TV G GY  
Sbjct: 184 ETLFNKVWGEEFYGADNTLTVHIRRLREKIEDTPSKPTYIITVKGLGYRF 233


>gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes
           J165]
 gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein
           [Propionibacterium acnes SK137]
 gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA1]
 gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes
           HL074PA1]
 gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA1]
 gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA2]
 gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
 gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA1]
 gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA1]
 gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA1]
 gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA2]
 gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA1]
 gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA2]
 gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA1]
 gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes
           HL007PA1]
 gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes
           HL086PA1]
 gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA4]
 gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA1]
 gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA3]
 gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes
           HL036PA3]
 gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes
           HL067PA1]
 gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA1]
 gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA1]
 gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA2]
 gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA1]
 gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes
           HL037PA1]
 gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA1]
 gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes
           HL045PA1]
 gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA2]
 gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA1]
 gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA2]
 gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes
           HL005PA3]
 gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes
           HL053PA2]
 gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes
           HL078PA1]
 gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes
           HL027PA2]
 gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes
           HL002PA3]
 gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes
           HL072PA1]
 gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes
           HL038PA1]
 gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes
           HL059PA2]
 gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes
           HL046PA1]
 gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA3]
 gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL096PA2]
 gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA2]
 gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes
           HL043PA1]
 gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes
           HL013PA2]
 gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA3]
 gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes
           HL092PA1]
 gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes
           HL083PA2]
 gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA1]
 gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes
           HL020PA1]
 gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes
           HL025PA2]
 gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL099PA1]
 gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium
           acnes 266]
          Length = 243

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHKPMIHTMRGAGYVLKP 241


>gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 221

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/219 (37%), Positives = 133/219 (60%), Gaps = 1/219 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +   IE  L    ++  +     +  +      +DAI+LDLGL D  G 
Sbjct: 1   MRILIVEDDRKVGQFIERGLSEVAYSGTLVRTCAEARDTLADSPYDAIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R +  + PV ILS   +++DKV+GL  GADDY++KPF+ EEL+ARIR+++RR  
Sbjct: 61  QLLRDWRSSGFNEPVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++     + ++L A+TVEV+G RI LT +E+ ++EL    +   LT+ M    ++D
Sbjct: 121 GKKTTVFEHRAIKLDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + +  ++DV++ +LRKKL +    K Y +T+ G GY
Sbjct: 181 SHSDLDTNLLDVYMRRLRKKLESTP-DKQYFKTLRGVGY 218


>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 220

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+  +   ++  L    + V     GE+ +EL     FD  ILD+ +  I G+ 
Sbjct: 3   RILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDGWT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ +L+  S+ +D++ G   GAD+YI+KPF+ + L+AR++ +++R   
Sbjct: 63  ICRKIRKES-KIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDT 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L ++  +  V      + LT KEY M+ ++   K+  +++E FLN ++ 
Sbjct: 122 KTEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +++ +D  + +LRKKL        +I+TV G GY   E 
Sbjct: 182 FDYYGDLRTVDTHVKQLRKKLK-----GKHIKTVRGVGYRFEEE 220


>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
 gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
           ACN14a]
          Length = 244

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  ++  L++  F+V     G   +   +    D ++LDL L  + G E
Sbjct: 3   RVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLPGLDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L  A+   PV +L+  +   D++ GL+ GADDY++KPF+  EL  R+R+++RR+  
Sbjct: 63  VFRRL-TARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVLRRAAE 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A +     +  G L V+  A+T       + LT +E+ ++  L  R     T+   L  
Sbjct: 122 AAAAPEPGVLRAGALVVDPAARTATRHEVPLGLTVREFDLLAFLLRRPGHAFTRVELLEQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   + V I +LR+K+ +       + TVWG GY 
Sbjct: 182 VWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRLLVTVWGVGYR 223


>gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC
           9905]
          Length = 222

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|300856180|ref|YP_003781164.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436295|gb|ADK16062.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 242

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D++ +   IE +L  E F N+     G DG+++C+    D ++LD+ L DI G 
Sbjct: 10  KILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGVKICQSERTDIVVLDIMLPDIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  LS  +S  DK+ GL  G DDYI+KPF+  E+  RI+A +RR +
Sbjct: 70  EVCKRIRQFSY-CPILFLSAKNSDVDKIVGLSMGGDDYITKPFSPREIAFRIKAQLRRQQ 128

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         I+ G ++++     V   G  + LT KEY+++  L+   N  + KE
Sbjct: 129 YDGIKEVKSSENENIIIGSITIDKLHSQVYKDGSEVKLTAKEYKLLLYLAENSNKIVNKE 188

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++          I V I  LR+KL         I TV G GY L +
Sbjct: 189 RLCEVVWGDDYFGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKLVK 239


>gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 223

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+IED + +   I   L  E+F     D   +G+   +  + D I+LDL L  + G 
Sbjct: 2   IKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKGM 61

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + L+ +R  K     P+ I+S  ++ +D + GL+ GADDY++KPF+ + L+A+I AI+RR
Sbjct: 62  QFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILRR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      +I    ++++ +   V V G  I LT KEY++++LL        T+   LN +
Sbjct: 122 NPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNAV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +    +   + +D  +  LRKKL        +I++V   GY 
Sbjct: 182 WGYESDVYTRTVDTHVSSLRKKLGTRGS---FIKSVPKIGYR 220


>gi|77456488|ref|YP_345993.1| osmolarity response regulator [Pseudomonas fluorescens Pf0-1]
 gi|77380491|gb|ABA72004.1| DNA-binding response regulator [Pseudomonas fluorescens Pf0-1]
          Length = 246

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G  +  +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEEENVTFGDYVLSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  + + +   DL ++L  + V   G RI LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V + +LR K+ +       I+TV G GYVL   
Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKI-DEGQDVKLIQTVRGMGYVLEAP 224


>gi|90020199|ref|YP_526026.1| two component transcriptional regulator [Saccharophagus degradans
           2-40]
 gi|89949799|gb|ABD79814.1| two component transcriptional regulator, winged helix family
           [Saccharophagus degradans 2-40]
          Length = 229

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 124/227 (54%), Gaps = 4/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL EDD+ LA+ ++  L +  F+V + + G +     +  E   +ILD+ L    G  V
Sbjct: 4   ILLAEDDRRLANLVKDYLGNHGFDVVIEEAGHNVARSVQTLEPALVILDINLPGKDGLSV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  K + P+ +L+   +  D++ GL+ GADDY+ KP     L+ARIRA++RR    
Sbjct: 64  CKDIRP-KFNGPILMLTARDTDADQILGLEYGADDYVIKPAEPPVLLARIRALLRRYNQE 122

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q     G+L++++ A+ V + G  I L+  E++++   + +    L++E   N +Y
Sbjct: 123 ISKPQDEYTFGELTIHMAARQVFIGGEEIKLSSHEFELLCTFAAQPGKVLSREYLFNIIY 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +   + IDV I +LRKK+ +A+     I+TVWGRGY+   +A 
Sbjct: 183 SRPYDGMDRTIDVRISQLRKKVGDASDNPTKIKTVWGRGYLFVADAW 229


>gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 222

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV +L+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLQEWRAGGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K    +HLY
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +I+V + +LR KL     G+N IET  G+GY  
Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGYRF 217


>gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112]
 gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC]
 gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118]
          Length = 238

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 85/237 (35%), Positives = 138/237 (58%), Gaps = 12/237 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALSQDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D+
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDDQ 237


>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
 gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
           ZC1]
          Length = 225

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 112/221 (50%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +++ L++E   V     G D +      + D +++D+ + ++ G+ 
Sbjct: 3   KLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIMMPNMDGWA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+       K++G   G DDY+ KPF   EL+ R+++I++R R 
Sbjct: 63  LCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G + +N     VE+ G  I L  KE++++  L+     T ++E  +  ++  
Sbjct: 123 SLSQVVEAGHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I ++R++    A G   I T+ G GY L 
Sbjct: 183 DYEGDERTVDVHIKRIRERFPQEASG-IAIRTIRGLGYRLE 222


>gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +++ +++ L      + V     DG       EFDA++LD+ L D  G 
Sbjct: 1   MRILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR     TPV +L+ +  I D+++GL SGADDYI KPF+ +EL AR+RAI RR  
Sbjct: 61  DLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +    L+++    TV V      L+ +E+ ++  L       ++K    + LY 
Sbjct: 121 GRASPCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEIESRLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V I KLR K+     G+  IET+ G GY +R ++
Sbjct: 181 WQEEIESNTVEVHIHKLRTKV-----GREKIETIRGIGYRMRLDS 220


>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 229

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F                    D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  +++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L    G +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FGLENMVQTVRGSGYRF 225


>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 224

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 127/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  IE+ LK E F++ + + G++G+   K+  FD I+LD+ L  + GFE
Sbjct: 4   KILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R      P+  L+    I DKV     GADDYI+KPF+ EEL+AR++A++RRS  
Sbjct: 64  VCKRIREDS-DVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRSTL 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +   +  DL ++  A  V   G  I L+ KE+++++ L L K   L ++  L  ++
Sbjct: 123 KNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+D++I  LR K+ +    + +I+T  G G+V +
Sbjct: 183 GFDQIGNNNILDLYIKYLRDKI-DKPYLRKFIQTKRGIGFVFK 224


>gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
 gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
          Length = 240

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 119/230 (51%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +  +I+  L+ E++ +     G + +++    E   +I+D+ +  + G  
Sbjct: 10  KILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKMDGLS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R +K + P+ ILS  +   DK+ GL  GADDYISKPF  +ELVAR+++ +RR   
Sbjct: 70  ATMKIRESK-NIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLRRYMQ 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    +  I+ G L +++  K + V G  + LT  EY+++ LL        + + 
Sbjct: 129 FGGMNAAESNKEQIINGGLILDMKGKRMMVDGEPVKLTATEYKIVSLLMNNLGRVFSADE 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +++         + V I ++R+K+   A    Y++ VWG GY + +
Sbjct: 189 IYERVWNEEAYATENTVMVHIRRIREKIEIDAKNPRYLKVVWGIGYKIEK 238


>gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 239

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L  I G  
Sbjct: 11  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGIDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 71  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 129

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 130 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 190 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 235


>gi|163856010|ref|YP_001630308.1| osmolarity response regulator [Bordetella petrii DSM 12804]
 gi|163259738|emb|CAP42039.1| response regulator protein [Bordetella petrii]
          Length = 244

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 64/213 (30%), Positives = 109/213 (51%), Gaps = 8/213 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV+V +  ++  +L +   FD ++LDL L    G  + R LR    +TP+ +L+ 
Sbjct: 30  SEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLTA 89

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
            +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G  
Sbjct: 90  KAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPY 149

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            +NL  +T+   G ++ +T  E+ ++++ +      L+++  +        E   + +DV
Sbjct: 150 VLNLSTRTLTRNGEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            I +LRK +        +I+TVWG GYV   + 
Sbjct: 210 QISRLRKLIEPNPSKPVFIQTVWGLGYVFVPDG 242


>gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +  ++   L++E + V+    G   +     +  D ++LD+ L    G EV
Sbjct: 4   VLVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVMLPGFDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++  +   PV +L+      D + GL  GADDY++KPF   E+VAR  A++RR    
Sbjct: 64  CRRIQAIRP-VPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVERA 122

Query: 123 AQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A+           G + ++  A+ V V G  +HLT  E+ ++  L+       ++E  + 
Sbjct: 123 AELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQLMG 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D    + +D  +  LR K+  A      + TV G GY L +
Sbjct: 183 EVWGWADASGTRTLDSHVKSLRAKIGAA-----RVRTVHGVGYALED 224


>gi|251797251|ref|YP_003011982.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544877|gb|ACT01896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 232

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 11/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD +++ +I   L+ E + V     GE  +E  + ++ D IILD+ +  + G+
Sbjct: 1   MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L   K    V +L+  + I DKV GL+ GADDY++KPF+  E++AR++ + RRS 
Sbjct: 61  EVFRKL-NQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSH 119

Query: 121 GH-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +     G LS+   ++TV + G  + LT KE+ ++  L+   +   ++++
Sbjct: 120 FTTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKV 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L  ++D       + +D+ I +LRKKL    G    I+T+ G GY       D
Sbjct: 180 LLKKVWDIHYAGGTRTVDIHIQRLRKKLGRWHG---LIQTINGIGYKFISKPPD 230


>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 227

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQRSY-VPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQST 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A       +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ 
Sbjct: 122 EAAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR KL        YI TV G GY    
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGYKFEP 227


>gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 227

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G + +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR+   
Sbjct: 70  CRELRSFS-AVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRTSST 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 129 DPHTPKV--LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|56540655|gb|AAV92781.1| PmrA [Salmonella enterica]
 gi|56540657|gb|AAV92782.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 229

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 124/226 (54%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           M+IL+++DDK +   +++ +K+E +       G++ +   +   +   +ILD+ + ++ G
Sbjct: 1   MKILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRTDPDISLMILDIMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V+R +R    S P+ +LS  +   DK++GL +GADDY++KPFN  E++AR+++++RRS
Sbjct: 61  MQVVREVRKDS-SLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRS 119

Query: 120 R----GHAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     ++  G L +N D+  V  + G  + LT  E+ ++ LL+   N   + +  
Sbjct: 120 EKDMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              ++        K + V +  LR K+  A GG+  IETVWG GY 
Sbjct: 180 FERVWQQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225


>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphop [Paenibacillus polymyxa SC2]
 gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Paenibacillus polymyxa SC2]
          Length = 224

 Score =  257 bits (659), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +   L+ E   V     G D + L    + D ++LD+ +  + G+E
Sbjct: 3   RVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDGWE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+        V+G   G DDY+ KPF+   LVAR++A+++R R 
Sbjct: 63  LCRKLREQ-TDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +  D    +     I L  KE++++  L+     T T++  +  ++  
Sbjct: 122 MASKSVTIGDLVLRSDTFECQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++   A      I T+ G GY L 
Sbjct: 182 DYEGDERTVDVHIKRLRERFPEATQSFA-IRTIRGLGYRLE 221


>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 239

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 23/239 (9%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDI 57
           M+  IL+++D+  +   +E +L++E F+V   + GED + L       + I+LD+ + ++
Sbjct: 1   MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E+   +R      P+  LS      DKV G + GADDYI+KPF+ EEL+ARIRA +R
Sbjct: 61  SGYELCSQIRREW-DLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119

Query: 118 RS---RGHAQSL------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
           R    R H +              +   DL ++ +  +V V   +I L+ KE+Q++  L+
Sbjct: 120 RYERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLA 179

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  T+E   + ++       +  + V I  LR+KL      + +I+T WG GYV 
Sbjct: 180 ENAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLET---ERQFIKTQWGTGYVF 234


>gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72]
 gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72]
          Length = 226

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L    ++D ++LD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A    PV  L+    +ED+VRGL+ GADDY+ KPF   EL+AR+R ++RR +
Sbjct: 61  GVLQTVRRAGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++D
Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +I+V + +LR K+ + +     I TV G GYVL    
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDSFEPKLIRTVRGMGYVLEAPG 224


>gi|87199616|ref|YP_496873.1| two component transcriptional regulator [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135297|gb|ABD26039.1| two component transcriptional regulator, winged helix family
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 228

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD   A  I   L  E F V     G +G+ +   + +  I+LD  L  + G  
Sbjct: 4   KILLVEDDADTAAFIVGGLAEEGFVVDRARDGREGLFMGTDHTYQCIVLDRMLPGLDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL ALR A + TPV ILS + + ED++ GL  GADDY++KPF   EL+ARIR +VRR  G
Sbjct: 64  VLAALRGAGVHTPVIILSALGATEDRITGLTRGADDYLAKPFAFAELLARIRLLVRRGSG 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+ +  GDL ++L ++ V      I L  +E++++E L    +  +T+ M L  ++
Sbjct: 124 APTEQTKLSCGDLEMDLLSRRVRRGARAIDLQPREFRLLEFLLRHADQVVTRTMLLEGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +IDV I +LRKK+ +       + TV G GY +
Sbjct: 184 DYHFDPGTNVIDVHISRLRKKI-DEGEVVALLHTVRGAGYRI 224


>gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
 gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus
           CMCP6]
          Length = 219

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY+++       +  +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++RKK+       N I+TV G GY L  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APNIIKTVRGLGYQLNAN 219


>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
 gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Streptococcus thermophilus LMD-9]
          Length = 229

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 130/227 (57%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  + L L+ E ++V   D G +G+E+    +FD I+LDL L ++ GFE
Sbjct: 4   RILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K  T + +++   SI D V GL  GAD+YI KPF  EEL+ARIRA  RR   
Sbjct: 64  VTRRLQQEK-DTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++          DL +++  + V      I LT +E+ ++  L    N  +T+E  L 
Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++   D  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 QVWKYDDVIETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 228


>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 234

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 121/229 (52%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+++ED+  L   ++  L+SE ++V     GE+   L     +D  ILD  +  I G E
Sbjct: 4   KIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKISGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      D+VRGL +GADDY++KPF+ +EL+ARI+A++RR+
Sbjct: 64  LCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++V+G++ ++  A  V      + L   EY+M+E+        L++   L+ +
Sbjct: 124 APERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDRV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +    E + + +DV I +LRK L       + I TV G GYV      D
Sbjct: 184 WGQSSEVDERTVDVHIGRLRKSL-IRGNESDPIRTVRGAGYVFDGREAD 231


>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 223

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|18309439|ref|NP_561373.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144115|dbj|BAB80163.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 234

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEVHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LNMVKKDEKKTNSYSIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 227

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  ++ +    G D +   +      I+LD+ L    G ++
Sbjct: 10  ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIMLPGRNGMDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 70  CKELRSFS-DVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS-- 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +        L V+         G  + LT  E +++   +       +++  L+ LY   
Sbjct: 127 SSEPHTPKGLLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G++ I++++G GY L 
Sbjct: 187 RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226


>gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 240

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
 gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
          Length = 224

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+ E F     D G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPTMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R++A+++R R  
Sbjct: 64  CKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G ++++     +      I L  KE++++  L+       T+E  ++ ++   
Sbjct: 124 YSQTIKLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + + IDV I +LR++ +  A    +IET+ G GY L  +
Sbjct: 184 YAGDNRTIDVHIKRLRERFAMIADF--HIETIRGLGYRLEVD 223


>gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 229

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 133/224 (59%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F+V ++  G +G+     Y++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSSYLSRALGESGFSVDISADGAEGLHYALEYDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R +K  TP+ +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGIRASK-QTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  +++V I +LR K+ +A      + TV G GYVL 
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKI-DAPFEVKLLHTVRGMGYVLE 222


>gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
          Length = 240

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L  I G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGIDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
 gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Crocosphaera watsonii WH 8501]
          Length = 223

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E +NV V D G+ G +L     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + R LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  SICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRRSP 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + +  GDL +  D +    Q   I+L+ KE +++          LT E     
Sbjct: 121 ALENVATNPLKIGDLELEPDNQVAYRQSRIINLSDKEVKLLTYFMEHPQQLLTHEQIYQF 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L++  ++P   ++   I  LR+K+         I TV+G+GY  
Sbjct: 181 LWEDSEKPSSNVLAALIRLLRRKIEEEG---PLIHTVYGKGYRF 221


>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 225

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +    K +N+     + G+  +   K    D I+LDL L D+ G E
Sbjct: 5   KILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDVDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    S P+ +L+  S   D+++GL+ GADDYI KPF+ +E++ARI+A++RR+  
Sbjct: 65  LCKKIRAFS-SLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTSQ 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++I   +  ++ D     + G  I  T  E+++  L         T+E  +N++Y  
Sbjct: 124 PKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYSD 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   + ID  I  +RKK+++   G N I  V+  GY  +E
Sbjct: 184 TTDISDRNIDTHIKNIRKKINDIQAGLNPIAAVYSVGYKFKE 225


>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 237

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 135/236 (57%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K LA  +EL L+ E +   V + G   ++     +FDAI+LDL L D+ G E
Sbjct: 3   KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQSK-ATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  + LT +EY ++  L   KN  + +
Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   +
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DIPGQPSYIKTVRGTGYMVRDEEDN 236


>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
           1988]
 gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
 gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
 gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
 gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
          Length = 225

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03]
 gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03]
          Length = 236

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E + V +   G + +E+ K +   +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGVEAVEMFKAHPDSYDIVTLDLNLPKKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                     G         L ++ D + V    + +  LT KE+ ++  ++ +     +
Sbjct: 123 HIEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
 gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
          Length = 262

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR    +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL AR++A++
Sbjct: 61  GLTLCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS            ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
 gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
           [Haemophilus influenzae PittEE]
 gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae 10810]
 gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
           influenzae R2846]
 gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
           with PhoR (or CreC) [Haemophilus influenzae F3047]
 gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
           11116]
          Length = 231

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+   I L L  + ++V      +  I   K      I+LD  L    G +
Sbjct: 4   KILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRSGIQ 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ ++  +   + P+ +L+  S+ ED +  L +GADDYI+KPF+ + L+ARI A+ RR 
Sbjct: 63  FIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVWRRI 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   +LS++ +A+ V  Q   I+L+  E++++           ++E  LN ++
Sbjct: 123 YEQQSQFIQIDELSIDENAQRVFFQQQEINLSSTEFKLLHFFMRHPEKVYSREQLLNRIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E + +D +I +LR+ L+     ++YI+TV G GY  
Sbjct: 183 HNDLEVEYRTVDSYIRRLRRNLAP-FQCEHYIQTVRGSGYRF 223


>gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 236

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E ++V +   G + +E+ K     +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   IS P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  IEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                     G         L ++ D + V      +  LT KE+ ++  ++ +     +
Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2]
          Length = 230

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 7/230 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  L   ++  L+ + F V           L +   F  I+LD  L    G  + R
Sbjct: 1   MVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLSICR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            LR + I TP+ +L+   S  D++ GL++GADDY+ KPFN  EL+ARIRA++RR      
Sbjct: 61  RLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVREVP 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++  G  S++L  +T+  +G  + LT  E+ +++ L       LT++  +N 
Sbjct: 121 GAPSQQVEVVSFGPWSLDLSTRTLTREGQIVTLTTGEFAVLKALVQHPREPLTRDKLMNL 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                     + IDV + +LR+ + +      YI+TVWG GYV   +  +
Sbjct: 181 ARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGVGYVFVPDGAE 230


>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 240

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 10/217 (4%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
              +   L  +  +V     G  G+ L + +  D I+LDL L  + G +V R +R    +
Sbjct: 16  REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLMLPGMDGLQVCREVRRTS-T 74

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--------GHAQ 124
            PV +L+ +    D+V GL+ GADDY+ KPF+  EL  R+  +++RSR        G A+
Sbjct: 75  VPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSRGPAAPAAPGSAE 134

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
                G+LS N  ++T    G  + LT +E+ ++  L        ++   +  ++     
Sbjct: 135 VTSADGELSANALSRTARRGGDELALTSREFDLLHFLLAHPGQVFSRTELMEQVWGWSF- 193

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +   + V + +LR+K+         I TVWG GY L
Sbjct: 194 GDQSTVTVHVRRLREKVEPDPTKPTRIVTVWGVGYRL 230


>gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 219

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 122/221 (55%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK++ + +E  L+ + + +   + G + +   K    D +ILD+ L +  G  +
Sbjct: 2   IYVVEDDKSIRNLLEYALREKGYEMKSFEDGSEIVREVKDKPCDLLILDIMLPEKDGISI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + P+ +L+  S   DKV GL  GADDYI+KPF+  E ++R++A++RRS   
Sbjct: 62  LKEIRQFS-NLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRRSNKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   ++ +N   ++V+V+G ++ LT KE++M+ L        ++++ FL  ++   
Sbjct: 121 DTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL  +     YIETV   GY   E
Sbjct: 181 YEGETRTVDVHIASLRAKLKESG---KYIETVRNLGYRFGE 218


>gi|254422112|ref|ZP_05035830.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196189601|gb|EDX84565.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 224

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 118/222 (53%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  LA S+   L +E + V V   GE G    +  ++D  ++D+ L  + G 
Sbjct: 1   MRLLLIEDDIQLAESLSEALTAEQYIVDVVKDGEAGWSQMQTLDYDLTLMDVTLPYLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR      PV +L+   + +DKVRGL +GAD Y+ KPF+  EL+A+IRA++RR  
Sbjct: 61  GLCQRLRSRGHQLPVLMLTARDTSQDKVRGLDAGADAYMVKPFDLSELLAQIRALLRRGS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +    L +N +          + LT KE+ ++ELL       L++   L  L+ 
Sbjct: 121 IPAAIALAYEHLQLNPETYEASYAQQALRLTPKEFSILELLMRNGRRVLSRSFILESLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +  P+ + +   I  LR KL  A   K++IETV G GY L+
Sbjct: 181 LQSPPDEETVKAHIKSLRNKLRAAGAPKSFIETVHGVGYRLQ 222


>gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 270

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L+IEDD   A  I   L+ +  +V V   G  GI       +D IILD  L     G 
Sbjct: 39  RYLIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLPNGFDGL 98

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ALR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 99  QILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 158

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL VNL +++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 159 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 218

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+         I TV G GY L +  +D
Sbjct: 219 DYRFDPQTNVIDVHISRLRSKVDKGFATP-LIHTVRGVGYSLSDQPQD 265


>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 221

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++N+ V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G+ + E++++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIIRGQS-DVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   +L +N  A    V G ++ LT KE+++I  L   +   L++   LN +
Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +V++ID  I  LRKKL        YI+TV G GY +
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKL-----CIPYIKTVKGIGYKI 219


>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 242

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++  +    G D ++  + +    I+LDL L    G  +
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLMLPGCDGLTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++  S   D++ GL+ GADDYI KPF+  E+V R+R ++RR    
Sbjct: 73  CRTIRQFS-NVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131

Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +         L ++         G  + LT  E+++++ LS       ++E  L+ L
Sbjct: 132 NDGVKAIEKTETALVIDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           YD       + ID  I  LR+KL       ++I TV+G GY       +E
Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241


>gi|229060229|ref|ZP_04197598.1| Sensor histidine kinase [Bacillus cereus AH603]
 gi|228719111|gb|EEL70723.1| Sensor histidine kinase [Bacillus cereus AH603]
          Length = 231

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 111/217 (51%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N++    G++ I++   YE D +ILD+ +    G EV + +R    + 
Sbjct: 16  ELLAVYLRNEGYNIFKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENN-TV 74

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD-- 131
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS     +     D  
Sbjct: 75  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNTATQKKDDGI 134

Query: 132 -----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
                + ++    TV+V    I LT  E+ ++ LL+       + E     +++      
Sbjct: 135 IRIRAVEIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 194

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 195 NKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 227

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V     G + +E       D ++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+R+++RR+ 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRSLLRRTT 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +   DL+++   + V     +I LT  E+ ++E+L       LT+   L  +
Sbjct: 121 RDEEESEAVSFADLTLDPVTREVTRGERQISLTRTEFALLEMLMSNPKRVLTRSRILEEV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +          ++V+I  LR+K     G    I TV G GYVLRE
Sbjct: 181 WGYDFPTSGNALEVYIGYLRRKTEAD-GEPRLIHTVRGVGYVLRE 224


>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 233

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+K++   +   LK E + V     G + ++  + Y+   ++LDL L  I G++
Sbjct: 4   KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVINGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + L     +  + +L+    I DK+ GL+ GADDY++KPF+  EL+ARI++++RR   
Sbjct: 64  VCKRL--EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLDK 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     I  GDL++N   +TV ++   +  T  E+ ++ LL     T  ++E  LN
Sbjct: 122 TIDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQILN 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +++       + +D  I ++RKKL N    ++ I+TV+G GY 
Sbjct: 182 IIWNMDYAGGTRTVDTHIQRIRKKLGNNY--QDLIQTVYGIGYK 223


>gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 223

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 131/226 (57%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LLIEDDK ++  I   L+  NF V++ + GE   +L +   +D I++D+ L  I G 
Sbjct: 1   MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +R  KI TP+ ILS +S+ +DKV  L SGADDY+ KPF+ +EL++R+ A+ RR++
Sbjct: 61  QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++L   G L++N D   V      I L+ +EY+++  L   +N  +++   L  
Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +    ++DV+I  LR K+        +I T+ G GY+L+E
Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIE---HNHKFIHTIKGIGYMLKE 223


>gi|17231280|ref|NP_487828.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17132922|dbj|BAB75487.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 238

 Score =  257 bits (659), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 57/224 (25%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + I   L  + + +     G+  + L + +    +ILD  L D  G+ 
Sbjct: 10  KILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNLPDTSGYS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++ +  V IL+G +   DK+R L +GADD+I+KPF+  E+  R++A++RR R 
Sbjct: 69  LCQEM-QSRNNVLVMILTGRTEEADKIRILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   ++   L++N + + V +    ++LT  E+ ++  L+       ++   +  +
Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + +++DV I +LRKKL +      +I+TV G GY   
Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231


>gi|325979111|ref|YP_004288827.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325179039|emb|CBZ49083.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   LK+  F        E   +  +  + D I+LD+ L    G  +
Sbjct: 2   IYCVEDDDDIRELMLYTLKTTGFVAQGFSNAELFWQAIESQKPDLILLDIMLPGSDGLSI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  L+        PV + +   +  DKV+GL  G+DDY+ KPF   E+++RI+A++RRS+
Sbjct: 62  LEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRSQ 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G+LS+++   TV+  G  I LT KE++++ LL    N   T++  LN ++
Sbjct: 122 KSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I  LR KL +A+   + I+T+ G GY L E 
Sbjct: 182 GEYFVGETRTVDVHIGTLRTKLGDAS---HLIKTIRGVGYRLEEE 223


>gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 239

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+   + G  G+ L    ++D +ILD  L  + G 
Sbjct: 15  MKILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 75  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 195 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 237


>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ RIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
 gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
 gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
 gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
 gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
          Length = 228

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  I G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGISGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKVI-NVGRAADSIRTVRGAGYSF 227


>gi|28870763|ref|NP_793382.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71737671|ref|YP_275453.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213968943|ref|ZP_03397083.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|289625628|ref|ZP_06458582.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646477|ref|ZP_06477820.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298487733|ref|ZP_07005774.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|301382821|ref|ZP_07231239.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato Max13]
 gi|302062977|ref|ZP_07254518.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato K40]
 gi|302134596|ref|ZP_07260586.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|302187955|ref|ZP_07264628.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. syringae 642]
 gi|28854011|gb|AAO57077.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|71558224|gb|AAZ37435.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|213926242|gb|EEB59797.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|298157825|gb|EFH98904.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|320323963|gb|EFW80047.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320328099|gb|EFW84104.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330869074|gb|EGH03783.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330875974|gb|EGH10123.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330876559|gb|EGH10708.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330953840|gb|EGH54100.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           Cit 7]
 gi|330986579|gb|EGH84682.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M301315]
 gi|331015882|gb|EGH95938.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 229

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 218


>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
 gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
          Length = 224

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 57/222 (25%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+ E F     + G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPTMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R++A+++R R  
Sbjct: 64  CKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G ++++     +      I L  KE++++  L+       T+E  ++ ++   
Sbjct: 124 YSQTIQLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + + IDV I +LR++ +  A    +IET+ G GY L  +
Sbjct: 184 YAGDNRTIDVHIKRLRERFALIADF--HIETIRGLGYRLEVD 223


>gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894]
          Length = 240

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KPF+  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+      L ++        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      + +I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWEADA 236


>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
 gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
 gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V   + G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 254

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +E  L  +   V     G + +EL +  E D ++LD+ + ++ GF 
Sbjct: 10  KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGFA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  +R      PV +L+ +  + D++ GL+ GADDY+ KPF+ +EL ARI+ ++RR+  
Sbjct: 70  VLERIRAQS-EVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQ 128

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     + ++I  GDLSV+ + +     G RI LTG E+ ++ELL  R    + + 
Sbjct: 129 GQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRL 188

Query: 173 MFLNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++        + +++DV I +LR KL         I T  G GY+ +
Sbjct: 189 DMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMFQ 240


>gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
 gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14]
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K     ++  L    F V +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R A+   PV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R + RR +
Sbjct: 61  GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++L  + V   G RI LT KE+ ++ELL  R+   L++    + ++D
Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +I+V + +LR K+ +       I TV G GYVL  +
Sbjct: 181 MNFDSDTNVIEVAVRRLRAKV-DDPFEPKLIRTVRGMGYVLEVD 223


>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
           15897]
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   I+L L+S  + + + +   D I        D  I D+ L ++ G  
Sbjct: 4   RIYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPELDGIS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    + P+ ILS      DKVRGL SG DDY++KPF   EL AR+R+++RRS+ 
Sbjct: 64  AIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQH 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H++ +I T  L ++     +  QG ++ LT KEYQ++  L   K   + +E  LN+++  
Sbjct: 124 HSK-VIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E + +DV I  LR KL +      YI+T+   GY   E+ +
Sbjct: 183 DFVGESRALDVHIRSLRAKLGDDGHH--YIKTIRSVGYRFIEDGQ 225


>gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 231

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 84/231 (36%), Positives = 139/231 (60%), Gaps = 1/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +++  L   ++++ V   GE+G+       +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDIELQTNLKQHLLDAHYSIDVASDGEEGLFQALECNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R++R  +   P+ IL+   S +DKV GL +GADDY++KPF+ +ELVAR++A++RRS 
Sbjct: 61  SLIRSVRQKERDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N  +  +      I+L+G EY++ E L L +    +K +   H+YD
Sbjct: 121 GKASPLVYNGPFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +  +I+VFI +LRKKL       N IET+ G+GY L+  A + + +
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYNLIETLRGQGYRLKILAPESSAD 230


>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 225

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I   L+ E++ VY  + GE  ++L     F+ IILDL +  + G +
Sbjct: 3   KILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNNFNLIILDLMIPKLSGEK 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R +    P+ +L+  SS E+K+ G   G DDYI+KPF+  EL ARI+A++RRS  
Sbjct: 62  VCQKIRQSS-QIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSND 120

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++ I+T   G++ +  +   V+       LT  E++++  L       L++E   N +
Sbjct: 121 SNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQLANKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID  I  +RKKL        YI TV+G GY  
Sbjct: 181 MGLEFSGFDRTIDTHIKNIRKKLK--LKKDEYIVTVYGAGYKF 221


>gi|777765|gb|AAB38544.1| srrB [Synechococcus sp.]
          Length = 237

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +   L  + + V     G   +   + +  D +ILD+ L D  G++
Sbjct: 5   KILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNLPDTNGYQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +   +    V +L+      D + G   GADDYI+KPF+   + ARI AI+RR R 
Sbjct: 65  LC-EIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q  +    L ++   + V   G  I LT  E+ ++  L+   +    +   +  +
Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNALIQAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++     + +++DV I ++RKKL         I+TV G GY      
Sbjct: 184 WEYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFESTG 230


>gi|300853303|ref|YP_003778287.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300433418|gb|ADK13185.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 233

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +L+I+DDK L   ++  ++ EN +  +   G +G+ L    +     +ILD+ + DI GF
Sbjct: 4   VLIIDDDKELCVLMKKCVEQENLSAIIAHGGVEGLRLADENKNSCSLVILDVMMPDIDGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + PV +L+  S  +DKV GL+ GADDY++KPF+  EL+AR+ +++RR  
Sbjct: 64  QVLKKIRETS-NMPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYT 122

Query: 121 GHAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +       I+   + ++   + V V    + LT KE+ ++  L+  K    TK+  
Sbjct: 123 TLNPTFITDTDYIMLKGMVIDKANRMVSVNDIPVELTSKEFDLLSFLASNKGRVFTKKQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 183 YMQVWEEEYAYDDNNIMSFISKLRKKIEPDPEHLFYILTVRGVGYRFNKEA 233


>gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 240

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E F   V   G   +   + +    I++D+ L D  G +
Sbjct: 7   RVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR +    PV  L+   + EDK+ GL  G DDY++KPF+ EEL+ARIRA++RR+  
Sbjct: 67  ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAH 126

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A+ + +   DL ++ DA  V   G  + LT  E++++  L       L+K   L+H+++
Sbjct: 127 PAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVWE 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   ++  +I  LR+K+       + I+TV   GYV+R
Sbjct: 187 YDFGGSDAVVQTYISYLRRKI--DVFEPSLIQTVPRIGYVVR 226


>gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family
           [Mesorhizobium opportunistum WSM2075]
          Length = 230

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L S+ + +      +  IEL +  + D ++LDLGL  + G E
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGLPGMSGHE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +LR  R   +  PV ILS  +     V  L+ GADDY++KPF   ELVARIR  +R    
Sbjct: 67  LLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKFQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + +  TGDLSV+L  + V+V+G  + L+ KEY+++ +L       LT    L  ++
Sbjct: 127 QQGEKPVFQTGDLSVDLVKRVVKVEGKEVKLSPKEYEILRMLVQHAGKVLTHHFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D  +V+ + V++ +LR+K+        YI T  G GY LRE
Sbjct: 187 G--DSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRE 228


>gi|257484807|ref|ZP_05638848.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011147|gb|EGH91203.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 229

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 218


>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
 gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
          Length = 229

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + V+V + G++GI + K    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     LV+RI AI+RR+
Sbjct: 67  ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + + +  GDL ++ +A  V   G ++ L  KE++++ LL+ +     T+E  L 
Sbjct: 127 SSSDEVSDNKVEIGDLVIDREAYLVFQNGEKVVLAKKEFELLYLLASKPGKVYTRESILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++       + IDV I KLR+KL        Y+ TV G GY   
Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGE-----RYVATVKGVGYKFE 227


>gi|316934891|ref|YP_004109873.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris DX-1]
 gi|315602605|gb|ADU45140.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris DX-1]
          Length = 241

 Score =  257 bits (658), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L +  ++D +++D  L    G 
Sbjct: 16  MRLLIIEDDRESADYLVKAFREVGHIADLAGDGEEGLALAESGDYDVLVVDRMLPKRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 76  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+      GDL ++  +  V   G  + L  +E++++E L       +T+ M L +++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRP-LLHTIRGAGYMIRD 238


>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
 gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
           HGF5]
          Length = 239

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 64/238 (26%), Positives = 116/238 (48%), Gaps = 17/238 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  + + +E  L+ E +        E+G ++ +    D  +LD+ L  + GFE+
Sbjct: 7   IAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPGMDGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      P+ ++S   S  DK+ GL+ G+DDY+ KPF+  ELVARI+  + R    
Sbjct: 67  CRRIRAE-AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWYKF 125

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A   +  G L + L+ + V   G  + +T KE++M+ + +   N   T+
Sbjct: 126 NHAEHVPRLAAASPELSNGRLQLLLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAFTR 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +  L  ++        + +D  I +LRKK+         IE +WG GY +R + ++ +
Sbjct: 186 DELLTSVWGDDYFGSDRAVDHLIKRLRKKVEQLP-----IEAIWGHGYRMRTDGEESS 238


>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   + + L+ E F  Y    G D +   +    +  I+D+ + ++ GF+
Sbjct: 4   KILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R + 
Sbjct: 64  LCYELR-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G++ +N     V V    + L  KE++++  L  +   T ++E  +  ++  
Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR+K        + I T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLREKFQEELSKFS-IRTIRGLGYRLE 222


>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
 gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
           7002]
          Length = 258

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ A+   ++  L    +++     G++ +++    + D +ILD+ +    G+ V
Sbjct: 16  ILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDGYYV 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    STP+ +L+ +  + D++ GL+ GADDY+ KPF+ +EL  RI+ I+RR++  
Sbjct: 76  CQEIRRES-STPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQKT 134

Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  G     +L ++ + + V      + LT  E+ ++ELL  +    L++   L  
Sbjct: 135 LPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVNQAGQPLSRTDILTA 194

Query: 178 LYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    R   +++++DV + +LR K+        +I T  G GY+ R+
Sbjct: 195 IWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLFRK 242


>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 242

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++       G D +E  + +    I+LDL L    G  +
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLMLPGCDGLTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + P+ +++      D++ GL+ GADDYI KPF+  E+V R+R ++RR    
Sbjct: 73  CRTIRQFS-NVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G   +      L ++         G  + LT  E+++++ LS       ++E  L+ L
Sbjct: 132 NDGVKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKL 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           YD       + ID  I  LR+KL       ++I TV+G GY       +E
Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241


>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
 gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
          Length = 220

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ +   I+  L    F+V     G++G+       +DA++LDL L  + G 
Sbjct: 1   MRILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    L+  G + +   +  V + G  + L  +E  ++EL  +     LT+      LY 
Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++     ++V I  LRKKL     G  +I T+ G GY L E  
Sbjct: 181 WDEDVSSNAVEVHIHHLRKKL-----GSQFIRTIHGVGYTLGEPV 220


>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 247

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 19/240 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++A +++  L+SE F V ++  G   +E+    EF  ++LD+GL D+ GFE
Sbjct: 6   RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K + PV  L+  SS  D+V GL+ G DDY+ KPF+  EL AR+RA++RR++ 
Sbjct: 66  VCRQVRTSK-NVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124

Query: 122 HA------------QSLIVTGDL------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
            A                  G L       V+     +   G  + L+  EY++++ L+ 
Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++   + H  D  D    + +D  +  LR K+         I T  G GY L E
Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAMERTVDAHVKSLRAKMKLIREEVEAIVTHRGMGYSLTE 244


>gi|332139716|ref|YP_004425454.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549738|gb|AEA96456.1| probable two component response regulator transcription regulator
           protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 227

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      I+  L    F V +   G DG       +++ I+LD+ L DI G+
Sbjct: 1   MKILVVEDEVKTGDYIKQGLIESGFVVELVRTGLDGHHKSMIGDYELIVLDVMLPDIEGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L +LR +   TPV  L+    + D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  KILSSLRESGKFTPVLFLTARDHVNDRVKGLELGADDYLVKPFAFAELLARVRTLIRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL +++ ++  +  G  I+LT KE+ ++EL+  R+   L + +  + ++D
Sbjct: 121 SVPNNTLHIADLELDIPSRVAKRGGKVINLTTKEFTLLELMVRRQGEVLPRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +IDV I +LR K+ +    K  I+TV G GY +  +  +E
Sbjct: 181 MNFDSDTNVIDVAIRRLRAKIDDDFPVK-LIQTVRGMGYKMSVDDSNE 227


>gi|312958365|ref|ZP_07772886.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311287429|gb|EFQ65989.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 246

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR A   TP+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRGANNQTPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
 gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
           sp. R2A130]
          Length = 233

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ +    +   L+   F V  T  GEDG+   +      I+LD  L  + G E
Sbjct: 8   KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIE 67

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR    +   P+ +L+      DKVR L +GADDYI KP++  EL+AR+RA +RR+
Sbjct: 68  VCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRA 127

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  GD+ ++     VE  G  I L   E++++ +   R     T+E  L  +
Sbjct: 128 NPAEVGEMLEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLERV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   + + + +DV + +LR+ L    G  + I T+   GY L
Sbjct: 188 WEHDLDIDQRTVDVHVGRLRRALKVN-GLADPIRTIRSAGYSL 229


>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
 gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax delafieldii 2AN]
          Length = 227

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 127/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F   +   G DG+ L    E+D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR R
Sbjct: 61  QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  + + +   DL ++L  + V   G RI LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V + +LR K+ +       I+TV G GYVL   
Sbjct: 181 DMNFDSDTNVIEVAMRRLRLKI-DEGQDVKLIQTVRGMGYVLEAP 224


>gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
 gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri
           93-146]
          Length = 219

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F V     G+ G+       +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRCWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY 
Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|167033487|ref|YP_001668718.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859975|gb|ABY98382.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 233

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  I G ++
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGIDGLQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    S P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 124 EPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ LK+E   V+    G D + L + ++   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K + V G  I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGTLILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230


>gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC
           8739]
 gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
          Length = 240

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
 gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1]
          Length = 224

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +A  IE  LK+E   ++    G+ G+E  K  E D +ILD  L  + G 
Sbjct: 1   MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + + +R       + +LS +  +E++++GL++GADDY++KPF+ EEL+ARI A+ RR+ 
Sbjct: 61  TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + H  + +   DL + L    V      I LT KE  ++EL   +     ++E  L +++
Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERVLANVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   ++DV++ +LRKK+         I+T  G GY L
Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQP-LIQTKRGMGYYL 221


>gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
 gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 229

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L ++ FNV     GE G++L +  ++  I+LD+ L  + GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVMLPTLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   + + +V   +++NL A+   ++   + LTG EY+++ LL+ R    ++KE  
Sbjct: 120 HITTMNTTSSNKLVVNGVTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R     + ID+ +  +RKK++        I+T+ G GYV 
Sbjct: 180 SEDVLGRRLASFDRSIDMHVSNIRKKIAEHLPN-ELIKTIRGTGYVF 225


>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 247

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 119/238 (50%), Gaps = 14/238 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+ ++   ++  L+   ++V     GE+ +        D I+LD+ +  + G+ V
Sbjct: 11  ILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYGV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR      P+ +L+ ++ + D++ GL+ GADDY+ KPF+ +EL ARI +++RR    
Sbjct: 71  CLELRKQS-DVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRRFHK 129

Query: 123 AQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +           I  G+L ++++ + V     RI LTG E+ ++ELL        ++   
Sbjct: 130 SDINTIIPNSLIIHVGNLKIDVNKRQVHKNEQRIRLTGIEFSLLELLVNHSGRVFSRLEI 189

Query: 175 LNHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENAKD 227
           L  L+        + +++DV I +L  K+ +      +I T  G GY    + E+ ++
Sbjct: 190 LQQLWGFVPGSHTDTRVVDVHISRLLTKVESDPNDPEFIITAKGSGYFFPRIVESEQE 247


>gi|168702458|ref|ZP_02734735.1| two component transcriptional regulator, winged helix family
           protein [Gemmata obscuriglobus UQM 2246]
          Length = 230

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL+ED + LA ++   ++ E F V V   GE+    C+   +D ++LD+ L  + G  +L
Sbjct: 2   LLVEDHQPLAKALRQGMEEEGFAVDVATDGEEADVKCRSTAYDVVVLDVMLPKVDGLSLL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP-FNKEELVARIRAIVRRSRGH 122
           +  R + ++T V +L+  S   DKV GL +GADDY+SK   + EEL ARIRA++RR    
Sbjct: 62  KRWRASGVNTHVLMLTAKSETADKVTGLDTGADDYLSKANLDLEELFARIRALIRRGHQQ 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++   DL ++  A+TV   G  IHLT +EY ++E L+  +   +T+ M   HLYD  
Sbjct: 122 KDPVLRCYDLEIDTAARTVRRAGRSIHLTPREYALLEFLAFHRGKVVTRSMIWEHLYDEY 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DE    ++DV+I  LR K+         I T WG GY+LR
Sbjct: 182 DENTSNVVDVYIRYLRNKVDKEF-DPQLILTRWGEGYMLR 220


>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 234

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIP 58
           MR+LL+ED+  L  +I+  L  + + V     G D     +    ++  +ILD  L  I 
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLPGIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR      P+ +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GLELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       +  G+ +++    TV  Q        I LT KE+Q++E      +  +T E 
Sbjct: 121 SPHLQPQQLTVGNFTLDYGNSTVVRQNTTGEQQSIPLTNKEFQLLEYFMNHPHQIVTTEQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             N +++   E    ++   I  LR+KL++     N IET+ G GY L+
Sbjct: 181 IRNQIWEVNAESSSNVVAAQIRLLRRKLTSN-DCPNPIETLHGMGYRLK 228


>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
 gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. FW1012B]
          Length = 230

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 12/228 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L++E + V     G + + L   +  D I+LDLGL D+ G E+
Sbjct: 8   ILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDGEEL 67

Query: 63  LR----ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           LR     LR       V +LS  S   DKV  L  GA DY++KPF+  EL ARIR  +RR
Sbjct: 68  LRTLPVWLRAK-----VIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122

Query: 119 SRG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S    G+LS++L+A    ++G  +HLT  E++++  L+      +T    L
Sbjct: 123 GGSDGESPPSRYTFGELSLDLEAHVASLKGEDLHLTPTEFKLLAYLARHAGKVVTHSQLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  + + +   + + I KLR+K+ +      Y+ T  G GY L +
Sbjct: 183 REVWGKQSQGQEHYVRIHIHKLRQKIESDPARPRYLHTETGIGYRLVD 230


>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
 gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
          Length = 227

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L+  +   L+  ++    TD  +  I L +   F A++LDL L D  G E
Sbjct: 3   RILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLMLPDGDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R    + P+ +++      D++ GL+ GADDYI KPF+  ELVAR++A++RR+  
Sbjct: 63  VCKAIRQ-HSNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRA-- 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           + +      +L ++ +     +       RI LT  E+ ++  LS       +++  ++ 
Sbjct: 120 NPEPTEQEHELQLDEERYEAILKQPQGQQRIALTAIEFALLATLSRHPGRIWSRDQLMDE 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
           +Y        + ID  I KLR+KLS+      ++I +V+G GY L 
Sbjct: 180 IYKDHRVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
 gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
           protein [Mariprofundus ferrooxydans PV-1]
          Length = 227

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLI+DD+ L   +   L SE F+V     G  G+   K  +F+  ++D+ +    G 
Sbjct: 1   MAILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR +  S PV +L+      D++ GL+ GADDY+ KP N  EL ARIRA++RRS 
Sbjct: 61  DLLRELRQSS-SLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSD 119

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +S        G L  +  ++T+   G  + LT  EY ++ +L       ++K     
Sbjct: 120 TQQESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSKYELSQ 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                R  P  + +DV I  LRKK+S A   +  I+TV   G++    
Sbjct: 180 AALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227


>gi|163943307|ref|YP_001642537.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865504|gb|ABY46562.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++E+   + + I L++    FN    D GE  +EL   +  D I++D+ L  I GF+V
Sbjct: 4   ILVVEEGITIRNFIVLIMNRAGFNALAADTGETALELLGKHNVDIILIDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    +  + +LS      DKV+GL  GADDYI KPF+  EL AR++A++RR +G+
Sbjct: 64  CKSIRENNKNIGIIMLSARVQDRDKVQGLTIGADDYIEKPFSSIELTARVQALLRRVKGN 123

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +++  I +    +NL  + +  +G  I LT  EY ++  L   +   ++++  LN ++ 
Sbjct: 124 KENMESIHSEPFRLNLQQERLYKEGVVIDLTPTEYIILRCLMENQGKPISRDELLNEIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + K+I V I +LR+K+     G  ++ TVWG+GYV R
Sbjct: 184 VNYVVKTKVIGVNIRRLRQKIEPNPSGPQFLRTVWGKGYVWR 225


>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 92/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VCKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 230

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ +L   +   ++   + V V   G + + +      D IILD+ L D  G E
Sbjct: 6   RLLVVDDEPSLQDIVATSMRFLGYQVAVAGTGREAVRIATDSHPDLIILDVMLPDFDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ +R A + + V  LS   +  DK+ GL +G DDY++KPF  EEL AR+ A++RR + 
Sbjct: 66  VMKRVRAAGVDSGVVFLSARDTPADKIAGLTAGGDDYVTKPFGLEELAARVAAVLRRVKP 125

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++ +   V   G  I L   EY+++  L +  N  L+++  L+ ++
Sbjct: 126 DPADDGTLRVADLELDPETYQVTRAGVPIELAPTEYKLLRHLMVNANVVLSRQQLLDAVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  ++  +I  LR+K+   A G+  I T  G GYVLR
Sbjct: 186 GTDFYGDDSVVATYISYLRRKV--DATGEPLIHTHRGFGYVLR 226


>gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM
           20583]
 gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 224

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED++ +   +   L +  F       G++  +  K    + I+LD+ L    G+ +
Sbjct: 2   IYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIMLPGEDGYTL 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  L+    +   PV +++   +  DKVRGL+ GADDYI+KPF   E +AR++A++RRS+
Sbjct: 62  LEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRRSK 121

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H+         L+VN++   V      + LT KE++++  L   K   L+++  L  ++
Sbjct: 122 KHSSKKEYHYKTLTVNVERHQVFDNDRAVELTLKEFELLRYLVENKGIVLSRDEILEKIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I  LR+KL ++      IETV G GY + ++
Sbjct: 182 GYECAGETRTVDVHIRTLRQKLGDSGF---LIETVRGVGYRIGDS 223


>gi|296129072|ref|YP_003636322.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020887|gb|ADG74123.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 256

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/241 (30%), Positives = 120/241 (49%), Gaps = 19/241 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A +I   L +E + V     G  G+      + D ++LD+ L  I G EV
Sbjct: 19  VLVVEDEPAIAQAIVHRLTAEGWTVEAVGDGHAGVAAAARLQPDVVVLDVMLPGIDGLEV 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R ++  +   PV +L+      D + GL  GADDY++KPF+  ELVAR + ++RR+   
Sbjct: 79  CRQIQAERP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKVLLRRTERA 137

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +V GD++++   + V+  G  +HLT  E+ ++  L+    T LT+
Sbjct: 138 ARAAERATVQQPDPPLVVGDVTIDSAQRRVQRAGTEVHLTPTEFDLLLTLASSPRTVLTR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDET 229
           E  L  ++D  D    + +D  +  LR+KL     G + I TV G GY      +A DE 
Sbjct: 198 ERLLADVWDWVDASGTRTVDSHVKALRRKL-----GPDLIRTVHGVGYAYEPVGDAPDEQ 252

Query: 230 C 230
            
Sbjct: 253 A 253


>gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 220

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F+V     G+ G +      +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR+ A++RR  
Sbjct: 61  DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G + ++  + +V + G  + L  +E  ++EL        LT+      LY 
Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LRKKL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHIHHLRKKL-----GSQFIRTVHGVGYTL 216


>gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 227

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
             DE E   ++V I  LR+KL N       +ETV G GY L    A  E  
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRLGPAQAPHEAA 226


>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
 gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
          Length = 239

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++DDK +   + + LK+E +       G++ I       +   +ILD+ + ++ G 
Sbjct: 13  KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R      P+ I+S  +   DK++GL +GADDY+SKPFN  E++AR+R+++RRS+
Sbjct: 73  EVIKEVRKDS-DIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 131

Query: 121 GH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++  G L +N D+  V  + G  I LT  E+ ++ LL+   N   + +   
Sbjct: 132 KQVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEIF 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        K + V +  LR K+  A GG++ I+TVWG GY + 
Sbjct: 192 ERVWQQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 238


>gi|71737975|ref|YP_272551.1| osmolarity response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257481801|ref|ZP_05635842.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289627977|ref|ZP_06460931.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|298485217|ref|ZP_07003310.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71558528|gb|AAZ37739.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298160205|gb|EFI01233.1| Two-component system response regulator OmpR [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322224|gb|EFW78320.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331860|gb|EFW87798.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866570|gb|EGH01279.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330873006|gb|EGH07155.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330890972|gb|EGH23633.1| osmolarity response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330986823|gb|EGH84926.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331009435|gb|EGH89491.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 246

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYELSLATRELKRGDVVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
 gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
           1_1_47]
 gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Parasutterella excrementihominis YIT 11859]
          Length = 231

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 65/221 (29%), Positives = 119/221 (53%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ ++   I    ++    V       +  +  +  + D I+LD  L D  G + 
Sbjct: 6   VLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCAGLDW 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR LR   +  S PV +L+     +D+VRGL++GADDY++KPF+  ELVARIRA++RR  
Sbjct: 66  LRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRRKG 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A    +  G L ++ +     V G  + L+  E++ +++ +       ++   ++ ++
Sbjct: 126 GDALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               + + + +DV + +LRK+L+  A   ++IETV G GY 
Sbjct: 186 GVGADIDERTVDVHMLRLRKQLAGTAAA-DFIETVRGVGYR 225


>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 228

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L+  I  ML    ++       E    L     +  I+LD+ L D  GFE
Sbjct: 5   RILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINLPDGTGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    PV   S  ++ +D++     G DDY+ KP++ +EL++R+ A++RR+ G
Sbjct: 65  ICRQLREAS-HVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAYG 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD+ +N  ++TV   G  + L  +E+ ++  L   KNT + K+  ++ ++ 
Sbjct: 124 GEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E   + V I  LR+KL +      YI+TVW  GY+L +
Sbjct: 184 AFSEVEPSTLTVHIRWLREKLEDDPAAPVYIKTVWRLGYMLED 226


>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 226

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  I ++L++E +  +    G   ++  K    D ++LDL L  + G E
Sbjct: 4   RILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+  S   D V+GL+SGADDY+ KPFN +ELVAR+R  +R +  
Sbjct: 64  ICARIREESG-VPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  GDL +++    V     +I+LT  E++++  L+++     T+EM L  ++  
Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             + + ++++V + +LR K+         + TV G GY 
Sbjct: 183 HYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGYR 221


>gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +   ++  L+ E F V     G++ + + +    D ++LD  L +  G +
Sbjct: 4   KLLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       + +++  S   DK+ GL+ GADDY++KPF+  EL +RIRA++RR RG
Sbjct: 64  VCREIRQTS-HCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                I     +L ++     V   G  + LT  E++++  L+ R     ++   L    
Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       + +D  I  LR+KL +      YI+TV+G GY   E
Sbjct: 183 EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRFGE 226


>gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
 gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702]
          Length = 222

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 77/218 (35%), Positives = 121/218 (55%), Gaps = 3/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +   L++EN+ V V   GE  + L + Y    I+LD+ L  I GF V
Sbjct: 4   ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIMLPGIDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R     TP+ I+S     EDK+ GL  GADDYI KP++ + ++A+I  I +R    
Sbjct: 64  CRKIREES-DTPILIVSAKVDKEDKLNGLILGADDYIEKPYDIDIMLAKIAGIFKRRYAV 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  ++ GD+ VN  ++TV      I +T KE++++ LL   K   LTKE   N ++   
Sbjct: 123 DE--LIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E + + V I +LR+K+ +      +I+TVWG GY 
Sbjct: 181 SFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYK 218


>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 236

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G+ G E+     +D +ILD  L    G 
Sbjct: 7   MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++ + +    QG  I L+ KE Q+++         LT    L 
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           HL++  + P   +I   I  LR+K+       + I TV+G+GY  
Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKIE-VGKELSLIHTVYGKGYRF 230


>gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 223

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +  S++  L+ + + + + D G+  + L     +D +ILD+ L D+ GF
Sbjct: 1   MRILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR    + P+  L+ +  ++ +V GL  G DDY++KPF   EL AR+RA++RR  
Sbjct: 61  DICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRREG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   D++++     V     +I+LT KEY ++E L       +++ M   H+++
Sbjct: 121 PSKTSQLKFLDITLDTINHQVWRGERKINLTRKEYLLLEFLMHNPRQVISRTMIAEHIWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV++  +R+KL    G  + I T+ G GY L+E 
Sbjct: 181 SDAENLSNVIDVYVRYVRRKLCEQ-GESDVIHTIRGFGYQLKEP 223


>gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IE +K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEGEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
 gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
           [Rothia mucilaginosa ATCC 25296]
          Length = 233

 Score =  257 bits (658), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  I L+L  E FN    + G    E       D ++LDL L  + G EV
Sbjct: 9   ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +  + P+ +L+  S  ED V+GL++GADDYI+KPF   EL+ARIR  + R R  
Sbjct: 69  CQQIRRSS-NVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRL-RPRES 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++  GD+ +++D +TV+     + +T  E+ ++  L       L+++  L+ ++   
Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  +  +++V + +LR K         +I+TV G GY +
Sbjct: 187 DVSDS-LVNVHVQRLRAKFDELGAD-RFIQTVRGVGYKI 223


>gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 222

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 117/218 (53%), Gaps = 6/218 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDDK++   I   L +E ++        +          D IILD+ L    G E+L+ 
Sbjct: 5   VEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSIDLIILDIMLPGKSGLEILKE 64

Query: 66  LR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GH 122
           +R      + PV +L+  ++  DK+ GL SGADDY+ KPF+  EL+AR+RA++RRS    
Sbjct: 65  IRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRRSSLSK 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I+  ++ ++ D +TV V G  + LT KE++++  L       LT+E  +  ++   
Sbjct: 125 TKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTKIWGFD 184

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E E + +DV I  LR+KL NA+     I+T+   GY 
Sbjct: 185 FEGESRTVDVHIATLRQKLKNASS---IIKTIRNLGYK 219


>gi|261345195|ref|ZP_05972839.1| QseB protein [Providencia rustigianii DSM 4541]
 gi|282566888|gb|EFB72423.1| QseB protein [Providencia rustigianii DSM 4541]
          Length = 219

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +++ L    F +     G+ G +      +DA+ILDL L +I G 
Sbjct: 1   MRILLVEDDRLIGDGLKVGLTQLGFTMDWFMDGKQGQQALFDAPYDAVILDLSLPNIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILKYWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALMEVAARLQALIRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     ++ GD+ ++  A TV  QG  + L GKE  ++ L        L++ +    LY+
Sbjct: 121 GQLSPTLIHGDVEMDPQAMTVTCQGKPVQLKGKELALLSLFLHNPKKVLSRSLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I+TV G GY L +
Sbjct: 181 WDEEVSSNSVEVHIHHLRRKL-----GAKFIQTVHGVGYRLGD 218


>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
 gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
           proteobacterium NOR51-B]
          Length = 236

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L+  +F+   TD   D   L      D ++LD  L    G E
Sbjct: 5   KILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR L+ ++ +   PV +L+  S+ ++ ++GL+ GADDY++KPF   ELVARI+A++RRS
Sbjct: 65  LLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRRS 124

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +G   +  +   +L ++ D + V +    I +   EY ++           ++   L+H+
Sbjct: 125 QGMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQLLDHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVL 221
           +      E + +DV I +LRK L +        I+TV G GY  
Sbjct: 185 WGANVYVEERTVDVHIRRLRKALQSHGKDYSGLIQTVRGTGYRF 228


>gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
 gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116]
 gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3]
          Length = 219

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L++  +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQILETLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL AR+RA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++  +  V  QG  + LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|160879612|ref|YP_001558580.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428278|gb|ABX41841.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 229

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 113/227 (49%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+A      L  ++F V +   G  G+E      FD I+LDL L  I GF 
Sbjct: 3   KILIIEDDAAIAAIERDYLAIDHFEVEIALDGRSGMEKALQGGFDLILLDLMLPGIDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA------I 115
           V   LR   +  P+ +++      DK+RGL  GADDYI KPF+   LVAR++A       
Sbjct: 63  VCCKLRET-LDIPILMVTARREDIDKIRGLGLGADDYIEKPFSPSVLVARVKANLAQYAR 121

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++++   A   +  G + +N D   V V    I L  KEY+++  L+L  +    +E   
Sbjct: 122 LKKTDRTAPIQLNIGSIRINTDTHRVYVNDIEIDLKNKEYELLLFLALNADVVFNRETLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   + V I +LR ++    G   YI+TV G GY L+
Sbjct: 182 ERIWGMDAMGDNATVAVHINRLRDRIEEDPGNPRYIQTVRGAGYRLK 228


>gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium
           acnes KPA171202]
 gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA1]
          Length = 243

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ +++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDENSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHKPMIHTMRGAGYVLKP 241


>gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
 gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
          Length = 233

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +  +I + +K++ +NV +   G++G+E  +  +    I+D+ +  + G  +
Sbjct: 5   ILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETNDIHLAIVDIMMPVMDGISM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +   R      P+  LS  S   DK+ GL  GADDYI+KPF   ELVAR+R+ +RR    
Sbjct: 65  VMEARKHH-DFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRRYEQI 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +   + GDL +N   K V +    I LT KE+ +++LL        + +  
Sbjct: 124 LNLKNETKNEDEYMIGDLVLNNTTKRVTLNSRDIKLTPKEFDILKLLISHPGQVFSSQQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++   +    + I V I KLR+K+        YI+ VWG+GY + 
Sbjct: 184 YELVWK-EEAINTETIMVHIRKLREKIEANPKKPIYIKVVWGQGYKME 230


>gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
 gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC
           700633]
          Length = 231

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 139/227 (61%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL L+ E +   +   G  G++     ++D I+LDL L ++ G E
Sbjct: 6   RILIIEDEKNLARFVELELQHEGYETKICFDGRSGLQAATDEDWDVILLDLMLPELNGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R LR  K  TP+ I++   S+ D+V GL  GADDY+ KPF  EE++ARIRA+ RR   
Sbjct: 66  VVRRLRQVK-KTPIIIMTARDSVMDRVTGLDQGADDYVVKPFEIEEILARIRALFRRLSI 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +R   Q+++   DL +  + +TV   G  I LT +EY+++ +L    N  L++E+ L
Sbjct: 125 EEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLTKREYELLLMLMENINVVLSREVLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++  + E E  +IDV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 185 NQVWGYKMEVETNVIDVYIRYLRNKI-DIPGRESYIQTVRGTGYVMR 230


>gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
 gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC
           29799]
          Length = 233

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +  +L+   +       G + +     Y++D I+LDL L  + G E 
Sbjct: 6   ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLWAGQYDYDLILLDLMLPGLTGEEF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR ++ + P+ +LS  + +E +V  L+ GADD+I KPF+  E++AR+ A +RR R  
Sbjct: 66  IAELRKSR-TMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQF 124

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       ++  GDL ++ ++ +V   G  + +T +E++++ LL        T+E     
Sbjct: 125 SSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYEQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++ G    +   ++V I  LR KL+  +    YI+TVWG G+ + E A+
Sbjct: 185 VWGGEYFGDDNTVNVHISNLRSKLAKVSSA-EYIKTVWGIGFKMNEEAQ 232


>gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 230

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +       L++  F V V + GE+     +    + I+LD+ L +  G  +
Sbjct: 9   IYIVEDDRNIREIEGYALRNSGFEVEVFETGEELYRALEKEIPELILLDVMLPNEDGLSI 68

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  +R    +   P+ +++  ++  DKV+GL  GADDYI+KPF   ELV+R++A++RR+ 
Sbjct: 69  LSNVRKDSKTENIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLRRAG 128

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G+ Q++  +   D+S++++  +V V G    LT KE++++  L   +   L+++  +  +
Sbjct: 129 GNGQNVGALSFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIMERV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E E + +D+ I  LR KL     G + I+TV   GY + +
Sbjct: 189 WGFDYEGESRTVDMHIKTLRHKLG---AGGDIIKTVRNVGYKIGD 230


>gi|90411434|ref|ZP_01219445.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
 gi|90327647|gb|EAS43990.1| putative two-component response regulator [Photobacterium profundum
           3TCK]
          Length = 262

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/240 (30%), Positives = 113/240 (47%), Gaps = 20/240 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  LA  I + L  +N  V          +L K   F  +ILD GL D  G  +
Sbjct: 21  ILIVEDDNDLAELIGMHLILQNHQVVRATTITKADKLIKENHFSLVILDRGLDDGDGLTL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TP+ +L+   S +DKV GL+SGADDY++KPF+  E  AR+RAI+RR   +
Sbjct: 81  CHTLRQHENWTPILMLTARDSEKDKVEGLESGADDYLTKPFSVLEFQARVRAILRRESHN 140

Query: 123 A--------------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
                                + ++    L++   +  VEV    I+LT  E+ ++  L+
Sbjct: 141 ESSSSSQRIQQTESENTLDNQEPVLHFDGLAIKPQSHQVEVNQQPINLTATEFTLLHFLA 200

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R     +K+  L+ ++          +   + +LR KL  +     YI T+WG GY  +
Sbjct: 201 KRPGRVYSKDELLSQVWHTDFSGYHHTVCSTVNRLRTKLETSHSKHKYIHTIWGVGYKFQ 260


>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
           [Bacillus pseudofirmus OF4]
 gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
           protein [Bacillus pseudofirmus OF4]
          Length = 231

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 13/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   + L L  E F     D GE+ I L   ++ D  ++D+ +  + GF+ 
Sbjct: 4   ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + PV  L+  S  +D++ GL  G DDY+SKPF+K EL+ARI+A++RR+   
Sbjct: 64  VKKLRETS-TLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQR 122

Query: 123 AQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +++I   D         + +N  A++V+V    I LT KE+ ++  L   +    T+E 
Sbjct: 123 NRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTREH 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L  ++    E   + +D  I  LR KL       N I+TVWG GY L +
Sbjct: 183 LLTSVWGLDYEGTERTVDTHIKTLRMKLKPYG---NVIQTVWGIGYKLVD 229


>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
           abortus bv. 3 str. Tulya]
 gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 228

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L+ E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKAI-NVGRAADSIRTVRGAGYSF 227


>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
           amyloliquefaciens LL3]
          Length = 250

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  ++L +    D IILD+ +  + GFEV
Sbjct: 29  ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R      P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 89  SEAVRSF-TDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 147

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 148 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 207

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++          I TV G GY   
Sbjct: 208 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 247


>gi|269965392|ref|ZP_06179512.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
 gi|269830038|gb|EEZ84267.1| putative two-component response regulator [Vibrio alginolyticus
           40B]
          Length = 243

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 12  ILLVEDDDDLAELVQMHLKFQGHKVSRATNVADAKAQYQQQPFDLLILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 131

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEVKVANEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 192 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQP 241


>gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
 gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii
           FI9785]
          Length = 236

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E ++V +   G + +E+ K     +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKKAPDSYDIVTLDLNLPKKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  MEVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                     G         L ++ D + V      +  LT KE+ ++  ++ +     +
Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
           [Stigmatella aurantiaca DW4/3-1]
 gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Stigmatella aurantiaca DW4/3-1]
          Length = 229

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D++ LA  I+  L++  F+  V   GE  +     +    ++LDL L DI G E
Sbjct: 3   HVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPDISGTE 62

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR         V +L+      D+VRG + GADDY++KPF+  ELV RI+AI+RR 
Sbjct: 63  VCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILRRG 122

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  + +  G L++++      V+G  + LT  E++++E +  R     T+E  L  
Sbjct: 123 TPAKEGAAPLTLGPLTLDVATHRFYVEGKEVLLTALEFRLLEHMMTRLGRVQTREQLLEE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E + ID  + +LR KL  A   + ++ETV G GY + 
Sbjct: 183 VWGLSSNLETRTIDTHVMRLRDKLGPA---RAHLETVRGVGYRIV 224


>gi|73542175|ref|YP_296695.1| heavy metal response regulator [Ralstonia eutropha JMP134]
 gi|72119588|gb|AAZ61851.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
          Length = 228

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEAKTGEYLRQGLTEAGFVVDLAANGLDGHHLAMSEAYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A    PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQTLRAAGNRVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +  GDL ++L  +     G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 VQASVDRVQVGDLVLDLARRRASRGGRRIVLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL 
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDTK-LIQTVRGMGYVLE 222


>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 229

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +  ++   L +E ++V     G   +   +    D ++LD+ L    G E
Sbjct: 6   RVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVMLPGYDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF   ELVAR+ A++RR   
Sbjct: 66  VCRRIQAVRP-VPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVER 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A+           G L ++  A+ V V G  + LT  E+ ++  L+      +T+E  L
Sbjct: 125 AAELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++   D    + +D  +  LR K+ +A      + TV G GY L 
Sbjct: 185 AEVWGWNDASGTRTVDSHVKGLRAKIGSA-----RVRTVHGVGYALE 226


>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
 gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
          Length = 231

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F V     G   +   +    D  +LD+ L DI GF+
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQTIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + QS +           L + +++    + G  + LT  E++++  L   + + +  E  
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCYLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL+        I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 226

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D   L   + L+L  E + V V D G  G++L     +D +ILD  L    G 
Sbjct: 1   MRILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + LR    +TPV  L+   +++D+V GL  GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DICQKLRTEGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRRSP 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+     DL ++ D +    QG  I L+ KE  ++    L  +  LT E    
Sbjct: 121 SFDLTVTQTRFKVADLELDSDNQVAYRQGRAISLSEKEVMLLSYFMLHPSQVLTHEQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           HL+  +++P   ++   +  LR+K+         I TV+G+GY   E
Sbjct: 181 HLWTEKEQPNSNVLAALVRLLRRKIEAEGELP-LIHTVYGKGYRFGE 226


>gi|323529546|ref|YP_004231698.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323386548|gb|ADX58638.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 230

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +A  +   ++ E + +     G           +D ++LDLGL    G 
Sbjct: 11  MRLLLVEDDEMIAEPVLDSMRREGYAIDWAQDGRAAELSLGNGVYDLVLLDLGLPRKDGI 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL A R      PV IL+   +++D++RGL +GADDY+ KPF+  EL AR+RA+ RR  
Sbjct: 71  EVLNAYRSQGGEAPVIILTARDAVDDRIRGLDAGADDYLVKPFDLNELAARVRALSRRRT 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q +   G+L+++  A  V   G  + L  +E+ ++++L        TK    + LY 
Sbjct: 131 GQKQPVYTHGELTLDPAAHEVTKSGVPVPLVPREFTLLQVLIEAPARVFTKAELEDKLYG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +E     I+V +  LR+K+     G   I TV G GY L+
Sbjct: 191 WGEEVGSNTIEVHVHSLRRKI-----GAEQIVTVRGVGYRLK 227


>gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 238

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 106/226 (46%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD  +   +  +L+ E + V     G + + + +   FD  +LD+ +    G++
Sbjct: 5   RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +L+      DKV GL+ GADDYI+KPF   EL ARI A++RRSR 
Sbjct: 65  VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSRR 124

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A        S +  G  +++       +      LT +E +++E      +  L +   
Sbjct: 125 TAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNTL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           LN  +    +   + +D  I +LRKK+         I TV G GY 
Sbjct: 185 LNLAWGIDYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYR 230


>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 228

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 116/229 (50%), Gaps = 11/229 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  L   ++  L +E +NV     G++ + + + YE   IILD+ L ++ 
Sbjct: 1   MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+ V R +R  K + P+ +L+      D + G + GADDY++KP++   L+AR + ++  
Sbjct: 61  GWTVCRRIR-KKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119

Query: 119 SRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               A     +  + +  + V+  ++TV + G  I+LT  E++++  L   +   +++E 
Sbjct: 120 RYSSAANVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +N ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 180 LINKIWGYEFAGDDRTVNSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 114/224 (50%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ ED+  +A  IE  LKS  +     +   + +       F+ +ILDLGL    G E
Sbjct: 3   HILIAEDEPRIASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGLPGRDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV IL+    I+DK+ GL+ GADDY++KPF  EEL+AR+R  +R    
Sbjct: 63  VLADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVSI 122

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +T    ++ ++L  +  +V    I L  +E+ + E         L+++  L+ +
Sbjct: 123 GTPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV++  LRKKL N+      IETV G GY L+
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGNS-----LIETVRGVGYRLK 221


>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 230

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   ++  ++ E F V     GE+ +     Y    I+LD+ +  + G EV
Sbjct: 5   ILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPLMDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
              +R  K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+A++RR    
Sbjct: 65  CNKIRE-KSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRITFP 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  SLI    L +++D  +V+++G  I+LT KE +++ +LS   N  ++++  L++++
Sbjct: 124 ESNKMSLIKYESLELDIDNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLLDNIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I ++R KL         I+T+W  GY   
Sbjct: 184 GVDYFGDPRTVDTHIKRIRSKLHLNGQYNWDIKTIWAIGYKFE 226


>gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX8]
          Length = 226

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A  +   L+ ++  + + + G +G+++   +EF++IILD  L  + GF
Sbjct: 1   MRILVVEDDRKMALVLRDALEKQSHRIVLANTGLEGLDIASSHEFESIILDAMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R+LR AK+STP+ +L+   +  D VRGL SG DDY++KPF   EL AR+RA+ RR+ 
Sbjct: 61  TVARSLRDAKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A       DL ++         G  I LT  E+ ++E +    +T L +E  +N ++ 
Sbjct: 121 ATASLSYQLEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E   +D F+ +LR K+    G K  I TV G GY L
Sbjct: 181 YEHTVENNTLDAFMKQLRSKVDEGHGNK-LIHTVRGFGYKL 220


>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
           PCC 7942]
 gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
           [Synechococcus elongatus PCC 7942]
          Length = 229

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++AL   +  ML+ E ++V V   G+ G +L     +D +ILD  L +  G 
Sbjct: 1   MRILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R++R      PV  L+   +++D+V+GL +GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               S    +  GDL ++   +    QG RI L+ KE Q++ +L       ++ +     
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQGRRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++   + P   ++   I  LR+KL  A G    I +V+G+GY  +
Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKLE-APGETPLIFSVYGKGYRFQ 224


>gi|315037993|ref|YP_004031561.1| Response regulator [Lactobacillus amylovorus GRL 1112]
 gi|312276126|gb|ADQ58766.1| Response regulator [Lactobacillus amylovorus GRL 1112]
          Length = 240

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           +IL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   KILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 RGHAQS----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168
               +            I T  L ++   + V      +  LT KE+ ++  ++ +    
Sbjct: 124 MMEEKPALLQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
 gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
           str. 'BoNT E Beluga']
          Length = 223

 Score =  257 bits (658), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   I   L  + FN++    GE+G+      + D IILD+ +  + 
Sbjct: 1   MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+L  LR    + PV  L+     EDK+ G + GADDY++KPF+ + LVA+++A+++R
Sbjct: 61  GLEMLEKLREVS-NVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119

Query: 119 SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R    S I     LSVN  +  V+V  + I L+ KEY+++  L   ++  L+++  L++
Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  I +LR+KL + +    YI TV G GY   
Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSA---YIVTVRGSGYKFE 221


>gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
 gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family
           [Halothiobacillus neapolitanus c2]
          Length = 262

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 8/242 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++DD  +   +   L+ + F+V V   G +  I L      D ++LD+ L    G 
Sbjct: 16  RILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + R L   K   PV +LS      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR  
Sbjct: 76  SIARRL-DPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +RG     I  GD +++   +   +    + LT  E+Q+++    R N  + ++  
Sbjct: 135 MEPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQI 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           +++L         + IDV I +LR+K+        Y+ T+WG GY+   + +        
Sbjct: 195 MDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGRSPRSPDAS 254

Query: 235 TA 236
           TA
Sbjct: 255 TA 256


>gi|168208958|ref|ZP_02634583.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170712748|gb|EDT24930.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
 gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
           27755]
          Length = 235

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDDK +   +E+ LKS+ + V+    G +G+E+ +  E    I+D+ +  + G +
Sbjct: 5   HVLIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEEIHLAIVDVMMPRMDGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  K   PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTVKLRE-KYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRRYRR 123

Query: 122 ---------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q++ V G L ++ +   V V G  + +T  EY+++ LL        + +
Sbjct: 124 FMEKLGDKEKTQNIHVIGGLELDEERVEVRVDGELVKVTPMEYKILLLLMKNPGRVFSAD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +++ R       I V +  +R+K+        Y++ VWG GY + + A
Sbjct: 184 EIYERVWNER-AVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEKQA 235


>gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC
           51908]
 gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family
           [Shewanella woodyi ATCC 51908]
          Length = 230

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +++  L   N+ V V   GE G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  +I  P+ IL+   S +DKV GL +GADDY++KPF  EELVAR++A++RRS 
Sbjct: 61  ALITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  LI  G  S+N  +  V+     I L+G EY++ E   L      +K +   H+YD
Sbjct: 121 GKASPLIHNGPFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL         IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQYGLIETLRGQGYRL 220


>gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1]
 gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
 gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
 gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c]
 gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a]
 gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D]
 gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b]
 gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d]
 gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1]
 gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a]
 gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
 gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D]
 gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B]
 gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G]
          Length = 241

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 136/236 (57%), Gaps = 11/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ E ++  V   G  G++L     +DAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHEKYDTTVESNGRKGLDLALRDNYDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQEK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQI 121

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      Q +I   DL++    + V      + LT +EY ++  L   KN  +T+E
Sbjct: 122 EKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  ++    + E  +++V++  LR K+ +  G  +YI+TV G GY++R +  DE
Sbjct: 182 QLLKKIWGSDSKIETNVVEVYVRYLRNKI-DVPGRSSYIKTVRGTGYMVRTDELDE 236


>gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A  +   L+ E + V     G   ++     + D +ILDLGL D+ G +
Sbjct: 3   RVLLVEDDPAIAEPLTRALQREGYEVGAHVTGGSALKQV--NDSDMVILDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   I+ P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RRS G
Sbjct: 61  VARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRRSGG 120

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +   D+ + + A         + LT KE++++ +L       + +E  +  ++
Sbjct: 121 EITEESDLSAQDVRIEVSAHRAFQGTRELQLTAKEFELLRVLVREAGAVVEREAIMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            G      K +D+ +  LR+KL + A   +YI TV G G+   
Sbjct: 181 GGDPSGSTKTLDMHVSWLRRKLGDDANNPHYITTVRGMGFRFE 223


>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +    +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL        YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLG---SSGEYIKTIYGVGYKL 221


>gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           CFT073]
 gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046]
 gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227]
 gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae
           Sd197]
 gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. W3110]
 gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89]
 gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536]
 gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC
           O1]
 gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS]
 gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           SMS-3-5]
 gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ATCC 35469]
 gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88]
 gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a]
 gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           UMN026]
 gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str.
           REL606]
 gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp.
           4_1_40B]
 gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50]
 gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736]
 gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR
 gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR
 gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073]
 gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli]
 gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K12 substr. W3110]
 gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. MG1655]
 gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046]
 gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae
           Sd197]
 gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227]
 gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli
           UTI89]
 gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536]
 gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli APEC O1]
 gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS]
 gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli str. K-12 substr. DH10B]
 gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5]
 gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638]
 gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A]
 gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11]
 gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22]
 gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171]
 gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia fergusonii ATCC 35469]
 gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli S88]
 gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli ED1a]
 gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli UMN026]
 gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82]
 gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7]
 gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp.
           3_2_53FAA]
 gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 83972]
 gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BW2952]
 gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)]
 gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli B str. REL606]
 gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli BL21(DE3)]
 gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O103:H2 str. 12009]
 gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15]
 gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042]
 gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli O55:H7 str. CB9615]
 gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088]
 gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1412]
 gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185]
 gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354]
 gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034]
 gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           FVEC1302]
 gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101]
 gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU
           83972]
 gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146]
 gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617]
 gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70]
 gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75]
 gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli DH1]
 gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
 gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112]
 gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83]
 gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327]
 gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010]
 gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G]
 gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86]
 gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736]
 gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605]
 gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206]
 gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143]
 gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74]
 gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227


>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL  A  G   I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-APAGFKPIDTVRGLGYLFNE 222


>gi|110799947|ref|YP_694916.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168216455|ref|ZP_02642080.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182624595|ref|ZP_02952377.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|110674594|gb|ABG83581.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|177910199|gb|EDT72587.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381505|gb|EDT78984.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LNMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11]
 gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9]
 gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9]
 gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli]
 gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli]
 gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli]
 gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli]
 gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11]
 gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042]
 gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli
           TA280]
 gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
           cellulolyticus 11B]
 gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
           [Acidothermus cellulolyticus 11B]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++ + L +  + VY    G   ++L   ++ D +ILDLGL D+ G +V
Sbjct: 4   VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R    + P+ +LS       KV+ L +GADDY++KPF  +EL+AR+RA +RR+R  
Sbjct: 64  IGGVRGWS-TMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRRARPT 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  I+T D +++L  KTV      I LT  E+ ++++L+      +T    L+ ++  
Sbjct: 123 SAEPRIITPDFTIDLADKTVRRGDEPIRLTPTEWHILDILARHAGRLVTTRQLLHDVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E   + V++ +LR+KL        Y+ T  G GY L 
Sbjct: 183 TYRNETHYLRVYMAQLRRKLEPDPAHPRYLRTEPGIGYRLV 223


>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
 gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LAH +   L++  F V +   G+D     +  + + +ILDL +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  Q   + LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPE-QNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K++  A       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFE 224


>gi|209809014|ref|YP_002264552.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
 gi|208010576|emb|CAQ80951.1| transcriptional activator protein, response regulator [Aliivibrio
           salmonicida LFI1238]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+      ++  L    + V ++  G DG+     Y++D IILD+ L  + G+
Sbjct: 1   MKLLIIEDETKAGDYLKKGLTESGYTVDLSRDGVDGLYNATTYQYDLIILDVMLPKLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  + STP+ +L+    ++D+V+G + GA+DY+ KPF   EL ARI   +R   
Sbjct: 61  QILQTLRNCENSTPIIMLTAKDQVDDRVKGFELGANDYLIKPFAFAELKARIENALRSQT 120

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++ +     +V  DL ++L   T       I LT KE+ ++EL   ++   L++    +
Sbjct: 121 ANSHTQKVNELVLCDLQLDLLKHTATRNHDNITLTAKEFSLLELFMRKQGEVLSRTTIAS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D   + +  +IDV + +LR K+ +       I TV G GY + E
Sbjct: 181 LIWDMNFDSDTNVIDVAVKRLRAKI-DKPYDTPLIHTVRGMGYKMDE 226


>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
 gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +   +  +LK   F+      G + +E          ++DL + ++ G+E
Sbjct: 3   KIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +L+       KV+G ++G DDY++KPF+ +EL+ R++A++RR R 
Sbjct: 63  LCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRRYRI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   I  G ++++ ++ +V + G    +  KE++++  L      T T++  L  ++  
Sbjct: 123 EASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I +LR++      G   I TV G GY L 
Sbjct: 183 DFDGNERTLDVHIGRLRERFPAEKSGFK-ITTVRGLGYRLE 222


>gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042]
          Length = 239

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLISTIRGMGYSFV 235


>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F V     G   +   +    D  +LD+ L DI GF+
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQTIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + QS +           L + +++    + G  + LT  E++++  L   + + +  E  
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL+        I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|168182818|ref|ZP_02617482.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237794261|ref|YP_002861813.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673963|gb|EDT85924.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263864|gb|ACQ54897.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG++     E D +ILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     + +G  I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENAIEEKNILSFGPFELNMSKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKLV 235


>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 247

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++AL   +   L++E + V V D G++     K    D +ILD  L  + G E
Sbjct: 4   RIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLSGVE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  + +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR+RA++RRS
Sbjct: 64  LCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRRS 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S +V GD+ ++ +   V   G  + L   E++++E          ++E  L+ +
Sbjct: 124 KPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N    ++ I TV G GY L E 
Sbjct: 184 WGRDIYVDERTVDVHVGRLRKAI-NRGRERDPIRTVRGAGYALDEQ 228


>gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VIETRRGQGYL 216


>gi|26988882|ref|NP_744307.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24983690|gb|AAN67771.1|AE016408_9 DNA-binding heavy metal response regulator [Pseudomonas putida
           KT2440]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 125/227 (55%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q  I    DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +I+V I +LR K+ +       I TV G GYVL E  +
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHPNKLIHTVRGMGYVLEERTE 226


>gi|322806176|emb|CBZ03744.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 233

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 1   MR---ILLIEDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR   +L+++D+K +  +IE+ L+S E+ N+     G D +++ +  E   IILD+ +  
Sbjct: 1   MRTYNVLVVDDEKEIRDAIEIYLRSIESINIIKAADGLDALDILENNEIHVIILDIMMPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G      +R    + P+ +LS  +   DK+ GL  GADDYI+KPFN  ELVAR+ + +
Sbjct: 61  LDGIRTCMKIRERN-NIPIIMLSAKNEDTDKILGLNIGADDYIAKPFNPLELVARVNSQL 119

Query: 117 RRSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR               I    L +N  +  V V G ++ LT  EY ++ LL+       
Sbjct: 120 RRYTNLGNFPKTADDDEICIDQLVINKTSHVVTVDGKKVKLTPIEYDILLLLANNLGRVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  ++++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 180 PSSQIYEYVWNEPSFKTENTVAVHIRRLRKKIEIDPKEPKYIKVIWGVGYKI 231


>gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271]
 gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271]
          Length = 218

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 2/216 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V   L
Sbjct: 2   DDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDVCFEL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +      
Sbjct: 62  R-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I  GD+ +N     V V    + L  KE++++  L  +   T ++E  +  ++    E  
Sbjct: 121 IQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGN 180

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 181 ERTLDVHINRLREKFQEE-KSKFSIKTIRGLGYRLE 215


>gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 124/232 (53%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++A+A  +   L  E F   +   G DG+   + ++ D ++LD  L D  G +
Sbjct: 5   RILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWMLPDRSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +  A+ + P+ +L+  S I DK+ GL+ GADDYI+KPF+  E+V RIR I+RR   
Sbjct: 65  ICKQV-TAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +  A S+I   D+ V+   + V  +G  + LT KE+ ++  L   +    T+   
Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++      +++ +D  I +LRKKL  A    + I TV+G GY   +  +
Sbjct: 184 LESVWGYDFPGDMRTVDTHIQRLRKKLDAA----DLITTVFGIGYKFEKRTE 231


>gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31]
 gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family
           [Caulobacter sp. K31]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 91/231 (39%), Positives = 131/231 (56%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L+  ++L L    + V     GE+   L +   +DA++LDLGL  + G 
Sbjct: 1   MRILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   I+TPV IL+   S  +KV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              + +   I+VFI +LRKKL     G   IETV G GY L    + ET E
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRLTP-LEGETTE 225


>gi|49475273|ref|YP_033314.1| two-component response regulator [Bartonella henselae str.
           Houston-1]
 gi|49238079|emb|CAF27286.1| Two-component response regulator [Bartonella henselae str.
           Houston-1]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +E   +    +V V   GE G  L +   +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGRYLEKAFEEAGHSVDVAYDGETGYALAETENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TP  ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNETPALILSALGQVNDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNIILQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+         + T+ G GY+L+  
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLYTIRGAGYMLKAP 224


>gi|255656550|ref|ZP_05401959.1| two-component response regulator [Clostridium difficile QCD-23m63]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G  +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIIDIMMPKMDGITL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR    + PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR   +
Sbjct: 66  TMKLRENH-NFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124

Query: 123 -------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                           +   G L +N + K V V G  I  T  E++++ LL        
Sbjct: 125 LNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++  +      + V +  +R+K+        Y++ VWG GY + +
Sbjct: 185 SADEIYERVWN-DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 237


>gi|83644592|ref|YP_433027.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632635|gb|ABC28602.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 264

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 16/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L+S    V V   G   +E  +  + D ++LDL L    G  
Sbjct: 27  RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RR + 
Sbjct: 87  ICRKVRP-SYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKE 145

Query: 122 HAQS---------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
             ++                +V  +L ++   +   ++   I LT  E+ ++ LL+    
Sbjct: 146 QGEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAG 205

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L++E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + A
Sbjct: 206 RVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264


>gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|304391092|ref|ZP_07373044.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315656132|ref|ZP_07909023.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304325975|gb|EFL93221.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
 gi|315493134|gb|EFU82734.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+AL+  I ++L+S  +       G   ++  +  E D ++LDL L  + G E
Sbjct: 23  KILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMDGIE 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  S   D V GL++GADDYI KPF  +EL+AR+ A +R    
Sbjct: 83  ICRRIREFS-NVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 141

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    + +NL +  V   G  ++LT  EY ++  L+ +     ++E  L  ++  
Sbjct: 142 AEHDVLKAAGVEINLASHEVSRGGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 201

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R   + ++++V + +LR K+         + TV G GY +
Sbjct: 202 RHASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 241


>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
 gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
           16795]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  SIE+ L++E + V+    G + +++    E   I++D+ +  + G + 
Sbjct: 4   ILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIMMPKLDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K + P+ ++S      DK+ GL  GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 64  TIKIRQEK-NIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRRYMNF 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++ +G L +N   K V+V G+++ +T  EY+++ELL   K    + +   
Sbjct: 123 GNFNNETREDVLRSGGLELNTSTKEVKVDGNQVKVTPIEYRILELLLRNKGRVFSIDEIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++          + V I ++R+K+        Y++ VWG GY + +
Sbjct: 183 EKVWKEESFNVENTVAVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230


>gi|152983691|ref|YP_001348856.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958849|gb|ABR80874.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 235

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++ + ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFGAFLDFKPELVVLDLMLPGQNGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR   
Sbjct: 68  VCREIRRV-DNLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALIRRHAP 126

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  G L+V+   +  E+ G  I LT  E++++ LL+ +    L+++  LN + 
Sbjct: 127 LPASPETLAFGQLNVDRRRREAELDGRSIELTTMEFELLWLLASQAGEILSRDEILNQIR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + +DV I KLR KL +       I+TVWG+GY+   
Sbjct: 187 GIGFDGLNRSVDVCISKLRSKLKDNPREPVRIKTVWGKGYLFNP 230


>gi|46203088|ref|ZP_00052097.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 232

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +     V     G DG  L +  ++D +I+D  L  + G 
Sbjct: 1   MRLLIIEDDREAAAYLVKAFREAGHAVDHAGDGLDGYALAREGDYDVLIVDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R+LR   I+TPV ILS +  ++D+V+GL++G DDY+ KP+   EL+AR   + RR  
Sbjct: 61  SLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRRA 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    GDL ++  +  V   G  I L  +E++++E L       +T+ M L 
Sbjct: 121 SVPGVTEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           H++D   +P+  +IDV + +LR K+         I TV G GYV+R +
Sbjct: 181 HVWDYHFDPQTNVIDVHVSRLRGKIDRGFENP-MIHTVRGAGYVIRAD 227


>gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQMDRLLAREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQSA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|254293644|ref|YP_003059667.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042175|gb|ACT58970.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD   A  +  +L     +V V + GE G+   +  EFDA+++D  +  + G 
Sbjct: 1   MRVLVIEDDIEAADFVRKVLSEAGHDVAVENDGEAGLSRAQSDEFDAMVVDRMMPKMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R    +TP   L+ +  +E++V GL++G DDY+ KPF   EL+AR+ A+ RR+ 
Sbjct: 61  EMLTTYRDTGGNTPALFLTALGDVENRVEGLKAGGDDYLCKPFAPSELIARVEALGRRAS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  + +  GDL ++L A+TV     +I L  +E++++E L    +  +T+ M L  ++
Sbjct: 121 SEAPTTKLQVGDLVMDLLARTVFRGEVKIDLQPREFRLLEFLMRNADQVVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + TV G GY L+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKDF-EVALLHTVRGAGYRLQ 222


>gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2]
 gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K S PV IL+   +++D+V GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++  +L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y 
Sbjct: 121 NQGESELIVSNLTLNIGRRQVWMDGQEVILTPKEYALLSRLMLKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
 gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC
           27560]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 112/228 (49%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E +NV     G + +E+ K  +   +++D+ +  + G   
Sbjct: 8   ILVCDDDKDIVEAIDIYLSKEGYNVIKAYDGMEAMEILKKEDIQLLLIDVMMPRLDGIRA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K S P+ ILS  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 68  TLKIRE-KSSIPIIILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTRL 126

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++   G L ++ + K V+V G  + LT  EY ++  L        T +    
Sbjct: 127 GTIAEPKSNVYSVGGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIYE 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++         + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 187 AVWNEEAVAADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEKQ 234


>gi|170724123|ref|YP_001751811.1| osmolarity response regulator [Pseudomonas putida W619]
 gi|169762126|gb|ACA75442.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L +   F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR +    P+ +L+       +++GL+ GADDY+ KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRQSNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 TVPGAPGSEDESVTFGDYELSLATRELKRGEEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 301]
 gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a
           str. 2457T]
 gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5
           str. 8401]
 gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301]
 gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str.
           2457T]
 gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5
           str. 8401]
 gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017]
 gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a
           str. 2457T]
 gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           4343-70]
 gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-671]
 gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           2747-71]
 gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71]
 gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-218]
 gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           VA-6]
 gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-272]
 gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-227]
 gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri
           K-304]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEDGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K L  SI   L+ + +       G++G+ELC    +D I+LDL L  + G 
Sbjct: 1   MHILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R +  STPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  EILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +S +   +   + G  + LT KE  ++E   L +N  ++ E  + H++D
Sbjct: 121 IQQDVCLQCGRISFDTRTRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G        I V I  LRKKL  A G  + I+   G+GY+L E+
Sbjct: 181 GSVNSLSNSIRVHISSLRKKLRTALG-FDPIQNKIGQGYILTED 223


>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
 gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|70729347|ref|YP_259084.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68343646|gb|AAY91252.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens
           Pf-5]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED     H +   L    FN  +   G  G       ++  +ILD+ L    G+
Sbjct: 1   MKLLIVEDQPKTGHYLRQGLSEAGFNAELVADGSTGQHQALTGDYALLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A +  PV  L+   +++D+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRSAGLEMPVLFLTARDAVQDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGS 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             AQ   +   DL ++L  + VE    RI LT KE+ ++E+L  R+   L K +  + ++
Sbjct: 121 AVAQETSLQLADLRLDLIRRRVERGSQRIDLTAKEFALLEMLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +    K  I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKIDDDFPNK-LIHTVRGMGYVLEE 223


>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
 gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
           [Thermovibrio ammonificans HB-1]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ++   +   LK++ ++V     G +  EL K  ++D I+LDL L  + G +
Sbjct: 3   RVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLD 62

Query: 62  VLR--ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R   LR     TP+ +L+ +   + KV GL++GADDY++KPF+ +EL+ARI A++RR+
Sbjct: 63  LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRRA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++    +  +  +K+V V G  IHLT  E Q++E          ++E  L  ++
Sbjct: 123 GY--SEVLEFEGIVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +DV+I +LRKKL +      +++T+   GY L
Sbjct: 181 GVEHNETTRTVDVYISRLRKKLGDKG---KFLKTLPRLGYKL 219


>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  +   L++E + V     G++     +    D +ILD  L  + G E
Sbjct: 6   RIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPGVSGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 66  LCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRRA 125

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S  +  GDL ++     V  +   +HL   E++++E   +      ++   L+ +
Sbjct: 126 NPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + + +DV + +LRK + N     + I TV G GY  
Sbjct: 186 WGPDIYVDDRTVDVHVGRLRKVI-NVGRAADSIRTVRGAGYSF 227


>gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 128/230 (55%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + + + L  ENF+V   + G+D I+L +    D I+LDL L D+ GF
Sbjct: 1   MKILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I DK+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +    + +I  G + + L  + V +    ++ T  E++++ L+        T+E
Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L+ ++        + +D+ I ++RKKL N    +  I+T++G GY   
Sbjct: 181 ELLDKIWGYDFSGNTRAVDIHIKRIRKKLLN---HEEAIKTIYGVGYRFE 227


>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
 gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +       L+ E F V   + GE  ++L K    D +++D+ +  + G  +
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  ++  +  TP   LS ++  ++++ GL  GADDY+SKPF+  ELV R++ I+RRS+  
Sbjct: 64  VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRSKRS 123

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           ++   +  G L ++   + V V    + LT KE+ ++ LL+       +K   L  ++  
Sbjct: 124 SEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +   I+V I  LR+KL        +I+TVWG GY   
Sbjct: 184 EYDGDANTINVHIHHLREKLQANDEKVIFIKTVWGLGYKFE 224


>gi|325272398|ref|ZP_08138793.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
 gi|324102475|gb|EGB99926.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 111/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR      P+ +L+       +++GL+ GADDY+ KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRQHNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 TVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
           SK82]
 gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LA  +   L++  F V V   G++  +     +   +ILDL +  + G
Sbjct: 1   MKHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDYI KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+    +    ++   + +  Q   ++LT  E++++EL         ++   L+H+ 
Sbjct: 120 DRKAEPEQNSL-FRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+++AA       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKITDAANTGNRHEWIQAVYGVGYRFE 224


>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED++ LA  +EL L+ E +  +V D G  G++     +FD I+LDL L ++ G EV
Sbjct: 4   VLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K +TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 64  ARRLREEK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIDIE 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  QS++   DL+V  + +        I+LT +EY+++ +L    N   ++E  L 
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREELLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    E E  ++DV+I  LR K+       +YI+TV G GYV+R+
Sbjct: 183 KVWGYDSEIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229


>gi|66046603|ref|YP_236444.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257310|gb|AAY38406.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
           B728a]
 gi|330970771|gb|EGH70837.1| heavy metal response regulator [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+LD+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYVVDWTQHGADGLHLALENRYDLIVLDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 218


>gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
 gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +EL L    +       G + I+  + +  D ++LD+ + ++ G+E 
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++      D V+GL+ GADDY++KPF++ EL+ARI A++RR+ G 
Sbjct: 64  CRRIRSFS-NVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I    L  + +  TV  +   I LT KE+ ++ LL    N   ++   +  L+   
Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWGYL 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            + E + +D  +  +R+KL  A      Y++TVWG GY   
Sbjct: 182 ADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +   LK   F+      G+  +   K +  D I+LDL L    G ++
Sbjct: 5   ILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLMLPGRRGLDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +++      D++ GL+ GADDYI KPF+  E+VAR+++++RR+ G 
Sbjct: 65  CKEIRSFS-DVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTGGR 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +    L ++       + GH + LT  E++++  L        ++   ++ +Y   
Sbjct: 124 LTASVQ--GLILDTSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIYPDE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                + ID  + KLRKK+S AA  +  I +V+G GY    + +
Sbjct: 182 RIVSDRTIDSHVKKLRKKISLAAPDQELIHSVYGIGYKFEASQE 225


>gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
 gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata
           D2]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I+L+EDD +LA      L    + V + + G+  +EL +    + ++LD+ L    GF+
Sbjct: 13  HIMLVEDDMSLAEWFGDYLTEHGYLVTLVNRGDAAVELIRTDLPELVVLDIMLPVKDGFD 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +  R      P+ +++      D++ GL+ GADDY++KP     L++RI+A++RRS  
Sbjct: 73  VCKEARAF-YQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNT 131

Query: 122 HAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q           I  G L ++  ++ V++ G  I ++  E+ ++  L+      +++ 
Sbjct: 132 PNQPNAETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRT 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              N L     +   + ID+FI +LRKKL + A     I+TVWG+GY+L  +A 
Sbjct: 192 ELFNQLRGSEYDGFDRSIDIFISRLRKKLGDDANHPYRIKTVWGKGYLLAADAW 245


>gi|121603068|ref|YP_980397.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120592037|gb|ABM35476.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 241

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 13/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  LA  +   L+   +       G  G+E  +    D +ILDL L D+ G E
Sbjct: 4   QLLMIEDDTRLASMVGEYLRQSGYGFAHAATGTAGLEALQATPPDLVILDLMLPDMDGLE 63

Query: 62  VLRALRVAKIS---TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           V R ++        T V +L+      D++ GL+ GADDY+ KPF   EL+ARIRA++RR
Sbjct: 64  VCRRIKGRGGDAARTAVLMLTAKGDPMDRIVGLEIGADDYLPKPFEPRELLARIRAVLRR 123

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     +      ++  G L ++ DA+ V V G+   LT  ++ ++  L+ R    
Sbjct: 124 GGNSNGNGGGAPADGHKVMRFGSLEIDRDARAVTVSGNPCELTSYQFDLLVALAERAGRV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L+++  +  +     E   + IDV + ++R  +   A     I TV G GYV  + 
Sbjct: 184 LSRDQIMEAVRGRELEAFDRSIDVHMGRIRSAIEADAKDPKRILTVRGVGYVFAKQ 239


>gi|93005532|ref|YP_579969.1| two component heavy metal response transcriptional regulator
           [Psychrobacter cryohalolentis K5]
 gi|92393210|gb|ABE74485.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L   I+  L    F V     G DG       EF  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEQKLGEYIKKGLTEAGFIVDHYMTGLDGYHALMTEEFSVVLMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A+  TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELIQRYRAAEKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I T DL +++  +TV      I LT KE+ +++    R+   L + +  + +
Sbjct: 121 QSDYKSTVIHTADLKMDIAKRTVYRGDTLIKLTAKEFALLQFFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   + +  +IDV I +LR K+ +       I TV G GY L  
Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDTKLIHTVRGMGYRLEP 224


>gi|323499146|ref|ZP_08104124.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
 gi|323315779|gb|EGA68812.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326]
          Length = 243

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D   L K    D ++LD GL D  G + 
Sbjct: 12  ILLVEDDDDLADLVQMHLKFQGHQVARVTSIADAKALHKDQNLDLVVLDRGLPDGDGLDF 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +   PV +L+   S  DKV GL++G DDYI+KPF+  E  AR+R I+RR    
Sbjct: 72  CHYLRQQQEWLPVLMLTARDSEMDKVDGLEAGVDDYITKPFSVLEFQARVRNILRRFNHK 131

Query: 123 AQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+S          +  G L +  D   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AESVVEPEHVNANMRFGSLIIAPDLHQVCLNNKEVSLTATEFSLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H++          +   + +LR KL  +    ++I+TVWG GY  +   
Sbjct: 192 LLDHVWHTNHSGYHHTVCSTVNRLRSKLCLSDSDHHFIQTVWGVGYKFQPQP 243


>gi|229119055|ref|ZP_04248396.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
 gi|228664407|gb|EEL19907.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock1-3]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I L +K   FNV  TD GE  ++L + +  D IILD+ L  I GF+V
Sbjct: 4   ILVLDDEITIRSFITLKMKHAGFNVLETDTGEKALDLLENHNVDIIILDVMLPGIDGFQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R       + +L+     +D+V GL  GADDYI KPF+  ELVAR+++++RR +  
Sbjct: 64  CKQIRKNNEKIGIIMLTSRVQGKDQVHGLTIGADDYIKKPFSINELVARVQSLLRRVKET 123

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +  I +    +N+  + +   G +I LT  EY ++  L       + ++  LN ++ 
Sbjct: 124 KKDMASIHSEPFKLNILQEKLYKDGIKIDLTPTEYIILRYLMENSIKPIPRDELLNKIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + K++DV I +LR+K+  +     ++ TVWG+GY  
Sbjct: 184 INCLSDTKVVDVNISRLRQKIEPSPSNPQFLLTVWGKGYRW 224


>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 241

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 19  MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 78  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 198 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 239


>gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V          ++ +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
             DE E   ++V I  LR+KL N       +ETV G GY L    A +E  
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRLGPAQAPEEAS 226


>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +EL L++E F V     GE  + +   +E   ++LD+ +  + G 
Sbjct: 7   IRILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+       V +L+    I+D+V+GL  GADDY+ KPF+ EEL+ARI+A +R   
Sbjct: 67  EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +  QG  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR+KL +       I T+ G GY 
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224


>gi|311111412|ref|ZP_07712809.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
 gi|311066566|gb|EFQ46906.1| DNA-binding response regulator VicR [Lactobacillus gasseri MV-22]
          Length = 214

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 9/215 (4%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             E F+V     GE+ ++    Y+ D +ILDL L    G EV R +R      P+ +++ 
Sbjct: 2   TKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKDGLEVAREVRQTH-DMPIIMVTA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------SRGHAQSLIVTGDLS 133
             +  DKV GL+ GADDY++KPF+  ELVAR++A +RR       +       I   +L 
Sbjct: 61  KDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDLTQKATEDDEDKNITISNLV 120

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +  +A  VE  G +I LT +E++++  L+      +T+E  L  ++      +V+ +DV 
Sbjct: 121 IMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHLLQTVWGYDYFGDVRTVDVT 180

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + +LR+K+ +       + T  G GY ++ N  DE
Sbjct: 181 VRRLREKIEDNPSSPTILVTRRGVGYYVK-NPSDE 214


>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
 gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I  + +   + V     GE  ++  K    D IILD+ +  + GF++
Sbjct: 5   ILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN-VDLIILDVMMPQMDGFDL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R      P+  LS   S  DKV+G   G DDYI+KPF  +EL+AR+ A +RR +  
Sbjct: 64  CKVIREQIY-CPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQRD 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+  + G+L++N     V + G +I LT KE++++ELL++      +KE     ++
Sbjct: 123 RVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++  I V I  LR KL  +     +I+TVWG GY L +
Sbjct: 183 GIDAMGDLNTIIVHINNLRAKL-TSGMSTYHIKTVWGVGYKLEK 225


>gi|288906147|ref|YP_003431369.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|306832192|ref|ZP_07465346.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|288732873|emb|CBI14452.1| phosphate regulon response regulator PhoB [Streptococcus
           gallolyticus UCN34]
 gi|304425631|gb|EFM28749.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   LK+  F        E   +  +  + D I+LD+ L    G  +
Sbjct: 2   IYCVEDDDDIRELMLYTLKTTGFVAQGFPNAELFWQAIESQKPDLILLDIMLPGSDGLSI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  L+        PV + +   +  DKV+GL  G+DDY+ KPF   E+++RI+A++RRS+
Sbjct: 62  LEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRSQ 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G+LS+++   TV+  G  I LT KE++++ LL    N   T++  LN ++
Sbjct: 122 KSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I  LR KL +A+   + I+T+ G GY L E 
Sbjct: 182 GEYFVGETRTVDVHIGTLRTKLGDAS---HLIKTIRGVGYRLEEE 223


>gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 110/226 (48%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   +E  L      +     G D        E+D I+LD     + G 
Sbjct: 1   MRILLLEDDIEIGTWVEDGLSKAGHVIDWVKDGHDAFLNATTREYDVIVLDRMTPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL+ALR    S PV  L+ + S+ED+V GL +G DDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  SVLKALRSTNNSVPVLFLTALGSVEDRVEGLDAGGDDYLPKPFAFSELLARVSALGRRPS 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + G   S +      +NL  +     G  + L  KE+++ E     K   LTK M L  
Sbjct: 121 TNSGETTSCLEVEKFQLNLLKQQCTRAGQPVPLNAKEFRLFETFIRNKGRVLTKNMLLEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +P   +++  I +LR K+         I T+ G GY+L +
Sbjct: 181 VWDMNFDPTSSVVETHISRLRSKIEK-PFDIELIRTIRGAGYILDD 225


>gi|169343028|ref|ZP_02864056.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298937|gb|EDS81011.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R      P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-SYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +  V G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LSMVKKDEKKTNSYVIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 220

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  L   +   L +EN+   +   GE  +   +  ++D IILDL L  + G 
Sbjct: 1   MNILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R +R      P+ + +      D++ GL+ GADDYI KPF+  E+VAR++A++RRS+
Sbjct: 61  SVCREVRKQS-QVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRSQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +      L ++ +A  V  QG  I LT  E++++E L   K+  +++++   + Y 
Sbjct: 120 APSGADNSI--LHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAYT 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  I KLRKKL         I +V+G GY L+
Sbjct: 178 DHRVVSDRTMDSHITKLRKKLQQIHPQ-EIIHSVYGVGYRLQ 218


>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101]
          Length = 256

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 9/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD  +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +T  P+ +L+ + S +DKV G  SGADDY++KPF+ EEL+ RI+A++
Sbjct: 61  GLTLCQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALL 120

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RRS           ++  G L++  +          + LT  E++++  L  R   T+  
Sbjct: 121 RRSDRAPLSAKHNEILSYGALTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 SLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 109/227 (48%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   +   L+  ++         +          D I+LD  L    G E
Sbjct: 4   QILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLPGTSGLE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R   ++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RRS
Sbjct: 64  LARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMRRS 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G+L ++  A  V      + +   EY+++       +   ++   L+H+
Sbjct: 124 REDDEDGSVAAGNLRIDGAAHRVFAGDAPVAIGPTEYRLLHFFMTHPDRVYSRAQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + G    E + IDV I +LR+ L    G    ++TV G GY     A
Sbjct: 184 WGGSVYVEERTIDVHIRRLRRTLEP-FGADGMVQTVRGAGYRFSAAA 229


>gi|291458570|ref|ZP_06597960.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419103|gb|EFE92822.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 233

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A      L+   F+V +   G  G+      ++  +ILDL L    GFE
Sbjct: 6   RILIVEDEEAIAELERDYLELSGFSVDLESDGGKGLARALKEDYALLILDLMLPGKDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +R  K   P+ ++S      DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 66  ICGEVRERK-DIPIILVSARKDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYER 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S      ++    + ++  A+ V V G  +  T +E+ ++  L+   N   +KE   
Sbjct: 125 LLGSSRTEIPILEIRGIKIDSTARRVFVNGKEVPFTAREFDLLYFLASHPNHVYSKEELF 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I KLR+K+  +      YIET+WG GY  +
Sbjct: 185 KEIWKMDSVGDIATVTVHIKKLREKIEIDNLSKPQYIETIWGVGYRFK 232


>gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  + ++I  +L  E + +Y    G + I++   +E   I++D+ +  + G   
Sbjct: 8   ILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHEIQLILIDVMMPKLDGLSA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R  K + P+ +LS  S   DK+ GL  GADDYI+KP+N  ELVAR+ + +RR    
Sbjct: 68  MMKIRE-KNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARVNSNLRRYLSL 126

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  + + +  G L ++ DA+ + + G  +  T  EY++ ELL      T + E   
Sbjct: 127 GAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENAGRTFSAEDIY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 187 SRIWNEDSYSVENTVMVHIRHIREKIEINPSEPRYLKVVWGIGYKMEK 234


>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD  +  S+E  L+   F V     G + +        DAI+LD+ +  + G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
            ALR      PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   + 
Sbjct: 61  TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I  G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++ 
Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DVFI  LR+KL    GG   + TV G G+VLR
Sbjct: 181 YDFAADTNVVDVFIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 221


>gi|157147945|ref|YP_001455264.1| DNA-binding transcriptional regulator BasR [Citrobacter koseri ATCC
           BAA-895]
 gi|157085150|gb|ABV14828.1| hypothetical protein CKO_03752 [Citrobacter koseri ATCC BAA-895]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHCLETGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L +NL  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLMLNLGRRQVWLAGQELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +EP    ++V I  LR K+     GK+ I TV G GY+L 
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLV 217


>gi|56540671|gb|AAV92789.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVSTEE 221


>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str.
           Erdman]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFEV
Sbjct: 6   ILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  ++ TPV +L+   +  D++ GL  GADDY++KPFN +EL AR+RA+ RR    
Sbjct: 66  CARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPIP 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D  
Sbjct: 126 RPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDAA 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E    I+DV+I  LR K+ +   G   +ET+ G GY LR++ 
Sbjct: 186 YEARSNIVDVYIRYLRDKI-DRPFGVTSLETIRGAGYRLRKDG 227


>gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. EDL933]
 gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4196]
 gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC508]
 gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli]
          Length = 239

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 235


>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               + + +  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKNNKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-DRPGENSYIQTVRGTGYVMR 227


>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
 gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVN 119

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +    +I  G++++    + V V G  + LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL        YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLG---SSGEYIKTIYGVGYKL 221


>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 3   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVMLPDTDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR R
Sbjct: 62  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     +I+T++G GY L
Sbjct: 182 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EHIKTIYGVGYKL 223


>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 115/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A     +  + +  + V+  ++TV + G  I+LT  E++++  L   +   +++E  +N 
Sbjct: 124 AVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 219

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +   SI+  L+ + ++V   + G+  +   K ++++ I+LD GL    G 
Sbjct: 1   MRILLVEDDTSQGESIKTWLELDGYSVDWVERGDYAMTALKQHDYECILLDRGLPYASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR  +  TPV  L+   SI D+V GL  GA+DY+ KPF+ EEL ARIR+ +R  +
Sbjct: 61  EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++  ++ ++  AKTV+ +G    LT +E+Q++  L    N  +T+E     +Y 
Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+V+I +LRKKL     G   I T+ G GY + E
Sbjct: 181 WGDEVESNAIEVYIYQLRKKL-----GSQTIRTIRGLGYRMGE 218


>gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAKQSFIRAVYGVGYRWEADA 236


>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
 gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
          Length = 260

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 38  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 97

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 98  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 157 AL-NSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 216 INFDSDTNTVDVAIRRLRAKV-DEPFPEKLIATIRGMGYSFV 256


>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
 gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
          Length = 232

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+K +  ++++ L  E+F +     G++ +E+ +  + D +++D+ +  + G +
Sbjct: 3   RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + +R  + + P+  LS     EDK+ GL  GADDYI+KPF+ EE++ARI+A +RR   
Sbjct: 63  ATKEIRKNQ-NIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   Q + + G +++N   K V V G  I LT  EY +++         LT +    
Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++          I V I  LR+K+        YI+ VWGRGY 
Sbjct: 182 EVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225


>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 253

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ A+   +   L    ++V     G   IE+      D ++LD+ +  + G+ 
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY++KPF+ +EL ARI AI+RR + 
Sbjct: 75  VCQKIRAIS-DIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +A S       I    L ++   + V      + LT  E+ ++ELL  R    +++   L
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+    R   +++++DV + +LR K+        YI TV G GY
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239


>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
 gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+LL++D+  L   + + L+ E + V + + G  G+   +     D ++LD  L D  G 
Sbjct: 9   RLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ R +R   +S PV +L+G   ++DKV  L +G DDY+ KPF+ EEL+AR+RA+ RRS 
Sbjct: 69  DICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRSN 128

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +     ++  GDL +N     V      I L+ KEYQ++  L    N   ++   L
Sbjct: 129 ALQPQASEPDVLRIGDLELNQANHDVRRGSRSIQLSNKEYQLLVFLMRSPNKVQSRLEIL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      +  ++DV+I  LR+K+  +      I TV G G+++R
Sbjct: 189 HGVWGESFYGDDNLLDVYIRYLRQKVE-SPDEPKLIHTVRGVGFMMR 234


>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +   +  +L    F       G + ++       D +I+D+ + ++ GFE
Sbjct: 5   KIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +L+    +  KV+G   GADDY++KPF  +EL+AR++A++RR + 
Sbjct: 65  LCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYKI 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +I TG++ ++ ++ ++ + G R  +  KE+++I  L+     T ++   +  ++  
Sbjct: 125 EASQVIQTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWGV 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV + +LR +      G   I TV G GY L 
Sbjct: 185 DFEGNERTLDVHVNRLRDRFPEETAGFK-ITTVRGLGYRLE 224


>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 133/227 (58%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K LA  +EL LK E ++  V   G  G++      FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR  K +TP+ +++   S+ D+V G   GADDYI KPF  EEL+ARIRA++RR   
Sbjct: 63  VARRLREKK-NTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  ++  +   DL++  +++ V      I+LT +EY+++  L    +  L +++ L
Sbjct: 122 ENDQQKSSKKSVTFKDLTIEKESRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    E E  ++DV+I  LR K+ N  G  +YI+TV G GYV+R
Sbjct: 182 TKVWGYDSEVETNVVDVYIRYLRNKI-NRPGENSYIQTVRGTGYVMR 227


>gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
 gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum C str. Eklund]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 128/229 (55%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+++L + +++ L  EN+ V   + G+D +EL +    D ++LDL L DI GF
Sbjct: 1   MKILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S     ++I  G + +  D + V +    +  T  E++++ L+        T+E 
Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++        + +D+ I ++RKKL +    ++ I+T++G GY   
Sbjct: 181 LLDTIWGYDFSGNTRAVDIHIKRIRKKLLD---HEDAIKTIYGVGYRFE 226


>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
           [Prochlorococcus marinus str. MIT 9312]
          Length = 260

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 10/232 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  LLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   + P+ +++ +  ++DKV G  SGADDYI+KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+        + Q ++  G L++  +          + LT  E+++I  L  R   T++
Sbjct: 121 RRTNRAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELIHCLLQRHGQTVS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V I  LR KL        YI+TV+G GY L 
Sbjct: 181 PALILKEVWGYEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232


>gi|313499723|gb|ADR61089.1| Two component heavy metal response transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 226

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 124/224 (55%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELATDGETGQFLALTGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGT 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q  I    DL ++L  +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQDTILSLADLRLDLIRRRAERAGLRIDLTAKEFSLLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +       I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHPNKLIHTVRGMGYVLEE 223


>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
 gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
           [Deferribacter desulfuricans SSM1]
          Length = 231

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +IEDDK +A+ +   LK E   V+    G++ ++       D IILDL L DI G E
Sbjct: 5   KIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLMLPDISGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + ++   +  P+ +L+  SS E+K+ G   GADDY++KPF+  EL+ R++AI++R R 
Sbjct: 65  LCQDIKEM-VDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILKRVRK 123

Query: 122 HAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +   +    G+L ++       + G  ++LT  E++++ +L+ +     ++   +    
Sbjct: 124 SSSEKLSFNNGELILDSSKYEALLNGKNLNLTPTEFKILLVLAEKPEKVFSRYDIIEQAL 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +   + +D  I  +R K+S  +    YI TV+G GY   
Sbjct: 184 GYQFDGYDRNVDAHIKNIRAKMSKLSEDAKYIVTVYGVGYKFV 226


>gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
 gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+A  + ++L++E       + G + I   + ++ D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    S P+ +L+  +   D V GL+SGADDYI+KPF  +EL+ARIRA +RR  G
Sbjct: 64  ICRAIRTES-SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRIDG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +I  GDL +++   TV    G  I LT  E+ ++  ++ +     T+E  L  ++ 
Sbjct: 123 GTGEIIEVGDLLIDVPEHTVTRKGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R   + ++++V + +LR K+ +     + + TV G GY 
Sbjct: 183 YRHASDTRLVNVHVQRLRAKIEHDPEDPHIVLTVRGVGYK 222


>gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
 gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047]
          Length = 238

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 136/236 (57%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K LA  +EL L+ EN+   V + G  G++      FDAI+LDL L D+ G E
Sbjct: 3   KILIIEDEKNLARFVELELQHENYETVVENNGRKGLDDALEQNFDAILLDLMLPDLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR + 
Sbjct: 63  IARRVRQVK-TTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121

Query: 122 H---------AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      Q ++   DL++    + V    G  I LT +EY ++  L   KN  +++
Sbjct: 122 EKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  LN ++      E  +++V++  LR K+ +  G  +YI+TV G GY++R+   D
Sbjct: 182 DQLLNKIWGPESNIETNVVEVYVRYLRNKI-DVPGQPSYIKTVRGTGYMVRDEDDD 236


>gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +A  +   L   +F V   D G +G+ L    EFD I+LD+ L  I GF
Sbjct: 1   MRILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVMLPGIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR  K  TPV +L+   ++ DKV GL+ GADDY+SKPF   E +ARIR+++RR+ 
Sbjct: 61  ELLRRLRKEK-QTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++   D+ V+   + V+    RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RAVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  + +LR K+ + +     + TV G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAVKRLRAKI-DNSFETKLLHTVRGMGYVLEDRS 223


>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
          Length = 225

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 53/221 (23%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +++ L++E  +V     G D +      + D +I+D+ + ++ G+ 
Sbjct: 3   KLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+       KV+G   G DDY+ KPF   EL+ R+++I++R R 
Sbjct: 63  LCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G++ ++     V++ G  I L  KE++++  L+     T ++E  +  ++  
Sbjct: 123 ALSQVVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I ++R++      G   I T+ G GY L 
Sbjct: 183 DYEGDERTVDVHIKRIRERFPQEISGFA-IRTIRGLGYRLE 222


>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
 gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
           [Chlorobium limicola DSM 245]
          Length = 233

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ LA  +   L+   +  ++++ GED ++      FD I+LD+ L  I GFEV
Sbjct: 6   LLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLPGIDGFEV 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  ++    P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R R   Q ++  G L V++    + + G  + LT  E++++  L  RK    ++E  L+ 
Sbjct: 126 RQRAGLQEVLSAGGLDVDITRHQITLDGKGVILTLMEFKLLVALLKRKGQAQSREALLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D       + ID  I +LR+KL         I+TV G GY   E  +
Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KMIKTVRGLGYKFDEPGE 231


>gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 235

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +A  +E+ L S+ F V+  +  EDG++L +  +    ILD+ +  + G E+
Sbjct: 6   ILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIMMPGMDGLEM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R    + P+ +LS  S+  DK+ GL +GADDY++KPFN  EL AR+++ +RR    
Sbjct: 66  CKKIRETH-NFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQL 124

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                       + I    +S+N D   V ++G+ + LT  E+ ++ LL+       + +
Sbjct: 125 NPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFSTD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++ +       + V I +LR K++        I TVWG GY + 
Sbjct: 185 EIFEKVWNEKVYEANNTVMVHIRRLRGKMNEDERENKIITTVWGVGYKIE 234


>gi|315644225|ref|ZP_07897395.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280600|gb|EFU43889.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 243

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +A  ++  L+ E ++V     G   +E+      D ++LDL L    G +V
Sbjct: 5   ILVVDDEQPIADILKFNLEKEGYDVICAFDGISAVEIALTKRPDLMLLDLMLPGKDGMDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R A +  P+ +L+      DKV GL+ GADDY++KPF+  E++AR++A +RR +  
Sbjct: 65  CREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAQMRRQQKP 124

Query: 123 AQSLIVTGD------------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
             S   TG             L ++ D   V   G  + LT +EY+++  L+      +T
Sbjct: 125 DNSADNTGGTSAGGQGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMT 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      +V+ +DV I +LR+K+        YI T  G GY++R
Sbjct: 185 REHLLQAVWGFEYFGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGYLMR 236


>gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
 gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDK +A ++ L+L++E FNV       + I +     FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++ A+ + PV  L+        V GL  GADDYI KPF   EL ARIR  + R  G
Sbjct: 63  VCTEIKQAQ-NIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTAL-RKYG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
           H+ +     DL V+  +  V+  G  + L+  EY+++ +     N  +T++  L+ L+D 
Sbjct: 121 HSPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ N  G    I TV G GY L
Sbjct: 181 AGEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221


>gi|156976220|ref|YP_001447126.1| positive response regulator for pho regulon [Vibrio harveyi ATCC
           BAA-1116]
 gi|156527814|gb|ABU72899.1| hypothetical protein VIBHAR_04992 [Vibrio harveyi ATCC BAA-1116]
          Length = 256

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 113/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       +     +   FD +ILD GL D  G +V
Sbjct: 25  ILLVEDDDDLAELVQIHLKFQGHQVLRATNIAEAKAQYQQQSFDLLILDRGLPDGDGLDV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 85  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSHT 144

Query: 123 A---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 145 TEVQTDKNLVEDAMDFGPLRIIPELHQVSLHDKDVTLTATEFTLLQFLATRPGRVYSKDE 204

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 205 LLDHVWNTNHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQP 254


>gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K-12 substr. W3110]
 gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
 gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW
 gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system
           withYedV [Escherichia coli str. K12 substr. W3110]
 gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. MG1655]
 gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli str. K-12 substr. DH10B]
 gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BW2952]
          Length = 223

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  + +V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
 gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
          Length = 236

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G+ G E+     +D +ILD  L    G 
Sbjct: 7   MRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 67  EICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSS 126

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++ + +    QG  I L+ KE Q+++         LT    L 
Sbjct: 127 SQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTHAQILQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           HL++  + P   +I   I  LR+K+         I TV+G+GY    N
Sbjct: 187 HLWEDNEPPNSNVIAALIRLLRRKIE-VGKELPLIHTVYGKGYRFGTN 233


>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 232

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 122/230 (53%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +  +IE+ L+++N+NV+    G + +E+ +  E   +++D+ +  + G   
Sbjct: 4   VLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVMMPRLDGTSA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+ ILS  S   DK+ GL  GADDYI+KPFN  EL+AR+ + +RR   +
Sbjct: 64  TIKIRE-NSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRRYTSY 122

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +      + +I  G + +  ++K V V G  + +T  EY+++ LL    N   + E    
Sbjct: 123 SNVTTTKEDVIKIGGIELRDESKAVFVDGEAVRITPLEYKILYLLMNHPNRVFSIEEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +++         + V I ++R+K+    G   Y++ VWG GY   +  +
Sbjct: 183 KVWNEPAY-NPDTVTVHIRRIREKIEINPGEPKYLKVVWGVGYKFEQPKR 231


>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 230

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +EL L +E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 10  IKILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+    +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A +R   
Sbjct: 70  EVCRMLKKM-DNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRNQF 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V G   ++   K +      + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR KL++       I T+ G GY 
Sbjct: 189 YDFGGEENIVEVYIRSLRDKLND--KNHQLIRTLRGSGYR 226


>gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11]
 gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11]
          Length = 239

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 AL-NSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 235


>gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 227

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 126/229 (55%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD  ++  +   L+   + V+    G   ++  +  + D I+LD+ L    G 
Sbjct: 1   MKILLVEDDLEISKLLAEFLQENGYEVFCQYDGLHVLDCLRENKIDLILLDIMLPYRNGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A+R    + P+ ++S   + ++KV  L+ GADDYI+KPF+ EE++ARI + +RR +
Sbjct: 61  TVLTAVRECS-TVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQ 119

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  GDL ++L+  T  +QG  + LT KE+ ++ELL    +   +K      +
Sbjct: 120 FQKDNPTHLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++     E   ++V I  LR KL      K++I+TVWG GY L + A+D
Sbjct: 180 WNAEYISEDNTLNVHISNLRNKLKAVCPDKDFIDTVWGIGYRLHK-ARD 227


>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 254

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 119/237 (50%), Gaps = 9/237 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD  +   +   L+   F+V   + G  G  L   +  D ++LDL L  + 
Sbjct: 1   MKPCILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ ++  +DKV G  SGADDY++KPF+ EEL  R++A++
Sbjct: 61  GLTLCQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALL 120

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR+           ++  G +++  +          + LT  E++++  L  R   T+  
Sbjct: 121 RRTDHAPLSTQHNEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            + L  ++    + +++ I V +  LR KL        +I+TV+G GY L   + D+
Sbjct: 181 SLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPSGDQ 237


>gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1]
          Length = 220

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL   I   L+ E + +     G  G+   +   FD +ILDLGL  + G 
Sbjct: 1   MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVGGLHALQHETFDLLILDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR    S PV IL+   +++D++ GL +GADDY+ KPF+  EL AR+RA++RRS 
Sbjct: 61  ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ LI    +S++   + V+  G  + LT KEY ++  L  +     T+E     LY 
Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +EPE   ++V I  LRKKL N       I TV G GY++   A
Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFNG-----LIRTVRGIGYLVEVKA 220


>gi|289643275|ref|ZP_06475400.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
 gi|289506915|gb|EFD27889.1| two component transcriptional regulator, winged helix family
           [Frankia symbiont of Datisca glomerata]
          Length = 253

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   + + L+   F+V     G++ +      + D ++LD+ L+DI GFE
Sbjct: 13  RVLVVDDEANITDLVRMSLRFHGFDVVTATCGQEAVAAVAEAKPDLMVLDVLLSDIDGFE 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+      DK+ GL  G DDY++KPF+ +ELVAR+RA++RR+R 
Sbjct: 73  VCRRLRDVGTDVPVIFLTARDRHADKIAGLTCGGDDYVTKPFSVDELVARVRAVLRRTRR 132

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              S     +   D+ +N D   V   GH I L+  E++++  L       L++   L+ 
Sbjct: 133 DRPSAAAQTLAFADVVLNEDTHEVARAGHPIDLSPTEFKLLRYLLANPRRVLSRVQILDA 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +    ++D ++  LR+KL  A  G   I T  G GY+L
Sbjct: 193 VWNYDFDGAYTVVDQYVSYLRRKL--APYGPPLIHTQRGFGYML 234


>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
 gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 114/222 (51%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD +L   + L L+    +V     G   +        D I+LD+GL ++ GF
Sbjct: 1   MKILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      PV  L+      D++ GL+ GADDY++KPF+  E+VAR+ AI+RRS 
Sbjct: 61  EVCRRLRARS-DVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSG 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A       G L+++ +A+     G  + LTG E+QM++ L        T+      ++
Sbjct: 120 TPARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + +D  +  LR+KL   AG  + IETV  +G  L
Sbjct: 180 GAGAQQSDRTMDSHLRNLRRKL-ADAGIPDAIETVHAQGMRL 220


>gi|118467592|ref|YP_886240.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168879|gb|ABK69775.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 120/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGSQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
 gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
           [Alcanivorax borkumensis SK2]
          Length = 234

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   + + L+  +F+V   +  + G E+      D ++LD  L  + G E
Sbjct: 5   RILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  + +   P+ +L+  S  ++K++GL  GADDYI+KPF+  EL++RI+A++RR+
Sbjct: 65  LARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRA 124

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  I    L ++  +  +      + +   EY+++E     +    ++   L+ +
Sbjct: 125 SSVAAEKAIEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + IDV I +LRK L+   G   +I+TV G GY  
Sbjct: 185 WGANVYVEDRTIDVHIRRLRKALAP-FGYDRFIQTVRGTGYRF 226


>gi|56540673|gb|AAV92790.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
 gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           pomeroyi DSS-3]
          Length = 229

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L++E F V   + GE+ + L      D I+LD  + ++ G EV
Sbjct: 8   VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    S PV +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R+ +RR R
Sbjct: 68  CRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSTVGLRLEYEDIVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGDDPVRTVRGAGYAL 228


>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 228

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +++ L+ E F   +   G    E      FD I+LD+ L  + G E+
Sbjct: 7   VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+ARIR  +RR   S
Sbjct: 67  CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 186 GFDYTGETNVVDVYIRYLRAKL-DDRFHKKYIYTVRGVGYVVRD 228


>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 240

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   ++  L    F+V     G +  +       + IILD+ +    GF +
Sbjct: 7   ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIMMPGDDGFSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R  K   P+ +L+  S   D+V GL+ GADDYI+KPF+  EL+ARI+A++RR+   
Sbjct: 67  CQQIRR-KSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRAEFR 125

Query: 123 AQS-------LIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +     +++   + +    G  I LTG ++ ++ L        L ++  
Sbjct: 126 QPEKEVVSGRKLKFAGWTLDTRTQLLTHEDGSGIDLTGSDFILLHLFLQHPGQVLDRDTI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +        P  + IDV I +LR+KL +   G   I+T+ G GY+L    + E
Sbjct: 186 SDATRGRESLPMERGIDVQISRLRQKLGDNGKGPRIIKTIRGSGYMLIAEVEHE 239


>gi|254446238|ref|ZP_05059714.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198260546|gb|EDY84854.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED   +A+ +   L    + V +   G++   L + +E+DA I D+ +    G 
Sbjct: 1   MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR     TP  +L+  + +ED+V+GL +GADDY++KPF+  EL+AR+RAI+RR R
Sbjct: 61  SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L + T       I LT +E+ ++ELL L     ++K      ++D
Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +    I+ V+I  LR+K+    G    I+T  G GY +R+++
Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQE-GEPPLIQTARGIGYAIRDSS 224


>gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 219

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+   +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQIIEALEQNEWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR   I+TPV ILS   ++  ++ GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLNGLRDENINTPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  G+LS++  +  V  QG  I LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGNLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKI-----APKVIKTVRGLGYQL 216


>gi|70733782|ref|YP_257422.1| osmolarity response regulator [Pseudomonas fluorescens Pf-5]
 gi|68348081|gb|AAY95687.1| DNA-binding response regulator OmpR [Pseudomonas fluorescens Pf-5]
          Length = 246

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRSANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQSA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELKRGNEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 239

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+K + +SI  +LK E + V     G + + L +    D I+LD+ +  + G   
Sbjct: 11  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  LR  K   PV ILS  +   DKV GL  GADDY+ KP+N  EL+AR++A +RR R  
Sbjct: 71  LMKLRE-KYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 129

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I+ G L ++   + V V+G  + LT  EY+++ELL        + E   
Sbjct: 130 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 189

Query: 176 NHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++    +      + V I  +R+K+   A    Y++ VWG GY + +
Sbjct: 190 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 238


>gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes
           HL063PA2]
 gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes
           HL030PA2]
          Length = 243

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+IED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVIEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHKPMIHTMRGAGYVLKP 241


>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 228

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 126/229 (55%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  +   I+  L    F + V   G   +++   ++FD +ILD+ L  + G 
Sbjct: 1   MAVLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    + P+ +L+ + S E+ V GL SGADDY+ KPF   EL  R++ ++RR+ 
Sbjct: 61  QLCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAG 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G      +++    DL ++ DAK   V+   ++LT  EY+++E     +   L++   L 
Sbjct: 121 GNSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGK-NYIETVWGRGYVLREN 224
            ++D        ++DV+I  LRKKL   +     YI+TV+G GY+++E+
Sbjct: 181 SVWDIDFNLGTNVVDVYINYLRKKL--DSKNPAKYIQTVFGMGYMMKES 227


>gi|126700190|ref|YP_001089087.1| two-component response regulator [Clostridium difficile 630]
 gi|115251627|emb|CAJ69460.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G  +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR    + PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMKLRE-NYNFPVIMLSAKSEEVDKMMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          S+   G L +N + K V + G  I  T  E++++ LL        
Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVSIDGKYIKTTPIEFKILSLLMRNAGRVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 185 SADEIYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
 gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans UA159]
 gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans]
 gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus
           mutans NN2025]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 88/227 (38%), Positives = 134/227 (59%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K LA  + L L+ E + V VT  G  G+E     +FD I+LDL L ++ G+EV
Sbjct: 5   ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLMLPEMDGYEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R L++ K +T V I++   SI D V GL  GAD YI KPF  EEL+AR+RAI RR    
Sbjct: 65  IRRLQLEK-TTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDIE 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++  +++     DL +++  +     G  I LT +E+ ++  L    N  +T+E  L  
Sbjct: 124 KAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLAR 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E E  ++DV+I  LR K+ +  G ++YI+TV G GY++REN
Sbjct: 184 VWKYDQEAETNVVDVYIRYLRGKI-DVPGKESYIQTVRGMGYIIREN 229


>gi|312796438|ref|YP_004029360.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
 gi|312168213|emb|CBW75216.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
          Length = 241

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNVYV +      +L     FD ++LDL L    G  + R LR +   TP+ +L+  
Sbjct: 28  EQGFNVYVAENAPSMNKLWVRERFDLLVLDLMLPGEDGLSICRRLRGSNDRTPIIMLTAK 87

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR               +   G+ +
Sbjct: 88  GEDVDRIVGLEMGADDYLPKPFNPRELVARIHAVLRRQAPSELPGAPSETAEVFEFGEFA 147

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T+   G  I LT  E+ ++++ + +    L++E  +        E   + +DV 
Sbjct: 148 LNLATRTLTKNGQEIPLTTGEFSVLKVFARQPRQPLSREKLMELARGREYEVFDRSLDVQ 207

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +    G   +I+TVWG GYV   + 
Sbjct: 208 ISRLRKLIEPDPGSPRFIQTVWGLGYVFIPDG 239


>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   ++  ++ ENFNV     GE+ +     Y    ++LD+ +  I G EV
Sbjct: 5   ILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLIDGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K +TP+ +++  S   DK+ GL SGADDYI KPF+  E+VARI+A++RR    
Sbjct: 65  CNRIRE-KSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITPV 123

Query: 123 AQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             S +       + ++++  +V++ G  I+LT KE +++ +L+   N  + ++  L++++
Sbjct: 124 ENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I ++R KL+        I+T+WG GY   
Sbjct: 184 GIDYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGYKFE 226


>gi|224543016|ref|ZP_03683555.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524041|gb|EEF93146.1| hypothetical protein CATMIT_02210 [Catenibacterium mitsuokai DSM
           15897]
          Length = 227

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D+K +   I++ L++ENF VY     +D +      + D  ILD+ + D+ GF
Sbjct: 1   MNILVVDDEKEITDLIQIYLENENFTVYKYYSSQDVLRDIDDLKIDLAILDVMMPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R  K   P+  ++      DK+ GL  GADDY++KPF   ELVAR++A +RR +
Sbjct: 61  SLCNTIRR-KYKFPIIFVTAKVEDIDKINGLSIGADDYVTKPFQPLELVARVKAQLRRYK 119

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ I    + +N D +       +I LT  E+ ++  L L K   +  +    
Sbjct: 120 NYNEKEEKNEIDFRGIRINNDTREFYFNEKKIELTKTEFAILWELCLHKGNVVKSDDLFL 179

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++       +   I V I  LR+K+ +      YI+ V+G GY + +
Sbjct: 180 KVWGEDYYKRDNNTIMVHIRHLREKMHDGGRNPKYIKKVYGVGYKIEK 227


>gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 262

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L+IEDD   A  I   L+ +   V V   G  GI +     +D IILD  L     G 
Sbjct: 31  RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 91  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL +NL  ++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+ +       I TV G GY L +  +D
Sbjct: 211 DYRFDPQTNVIDVHISRLRGKV-DKGFEPALIHTVRGVGYSLSDRPQD 257


>gi|90411546|ref|ZP_01219556.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
 gi|90327436|gb|EAS43789.1| Putative transcriptional regulator [Photobacterium profundum 3TCK]
          Length = 225

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  L   ++L L   +F     + G DG+      E+D I+LD+ L D+ G+
Sbjct: 1   MKILIIEDETKLGKYLQLGLNESSFTTDWVNNGLDGLHQAMSPEYDLILLDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  ++    + P+ +L+   S+ED+V+GLQ GADDY+ KPF   EL+ARI+  VR++ 
Sbjct: 61  EILTKIKAYYPTRPIIMLTARDSVEDRVKGLQLGADDYLVKPFAFIELIARIQNQVRKNE 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +   DL ++L  + V      I LT KE+ ++ELL  R+   L+K    + ++
Sbjct: 121 NVATKTTLTIADLHIDLLRRRVTRNDQHIDLTAKEFLLLELLVSREKEVLSKAFIASKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +I+V I +LRKK+ +       I T+ G GYV+ 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRKKV-DDPFEFKLIHTLRGMGYVME 222


>gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  LA  +   L+   F  +V+  GED +       FD ++LD+ L  I GFEV
Sbjct: 6   LLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  +     P+ +L+      D++ G + G DDY+ KPF+  EL+ RIRAI    R
Sbjct: 66  CRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G     +  G L V+L    V ++G  + LT  E++++  L  RK    ++E  L+ 
Sbjct: 126 RHGGRVPEQLRAGTLDVDLVRHLVTLEGRELLLTLMEFKLLAALLKRKGEAQSREKLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D       + ID  I +LR+KL         I+TV G GY   + A
Sbjct: 186 VWDVDRSINTRTIDTHITRLREKLGETG---RMIKTVRGFGYKFEDEA 230


>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
 gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
          Length = 240

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +++++D+K + +SI  +LK E + V     G + + L +    D I+LD+ +  + G   
Sbjct: 12  VMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLNGLSA 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  LR  K   PV ILS  +   DKV GL  GADDY+ KP+N  EL+AR++A +RR R  
Sbjct: 72  LMKLRE-KYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRRYRAW 130

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I+ G L ++   + V V+G  + LT  EY+++ELL        + E   
Sbjct: 131 GGELPKENDDQIINGGLVLDKKQRIVLVEGEEVRLTATEYKILELLMEHPGQVFSSEQIY 190

Query: 176 NHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++    +      + V I  +R+K+   A    Y++ VWG GY + +
Sbjct: 191 ENVWQESANYTVENTVMVHIRHIREKIEIDAKKPRYVKVVWGIGYKMEK 239


>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 236

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  LA  +E  L    +  +++   ED +E      FD ++LD+ L  + GFE+
Sbjct: 6   ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R  +     P+ +++      D++ G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G  + L+  GDL ++L    V + G  + +T  E++++  L  RK    ++E  L+ 
Sbjct: 126 RQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++D       + ID  I ++R+KL         I+TV G GY   E   D+  E
Sbjct: 186 VWDVDKSINTRTIDTHITRIREKLGETG---RMIKTVRGLGYKFEEKESDDHAE 236


>gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
 gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain
           protein and a winged-helix DNA-binding domain protein
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED+  +   I    K  N+ VY    G+D +      + + IILD+ + ++ G+EV R +
Sbjct: 2   EDEIRIREVIADYFKQNNWEVYEAGNGKDALLWFDSVQPELIILDIMMPELDGWEVCRQV 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS- 125
           R      P+ +L+  S  +DK+ G + GADDY++KPF+ + L+AR  A+++R  GH Q  
Sbjct: 62  RSRSG-VPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGHVQPE 120

Query: 126 --LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
             ++  G   +N  A  +EV    + LT KEY+++ LL   K   ++++  LN ++    
Sbjct: 121 SHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNRVWGINF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           E + +++D  I KLR KL        +I TV+G GY   E 
Sbjct: 181 EGDTRVVDTHIKKLRSKLG---RESRHIRTVFGTGYRFEEE 218


>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 224

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  +   PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  GDL +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGASG---EYIKTIYGVGYKL 222


>gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
 gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ EDD  +   +  +L+ E +       G++   L   ++ D ++LD+ +  + G+
Sbjct: 1   MKVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V R +R      PV  ++  S   D+V GL+ GADDYI KPF   E++ARI A++RR  
Sbjct: 61  AVCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCN 120

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +           DL+V            +I L+ ++ ++++LL       + ++M 
Sbjct: 121 KALPAEQIENDHFTMDDLTVLPLQLRAHRDQTKIELSLRDIKILQLLYREAGKVVDRDML 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            N  +     P  + +D  I KLRK +         I+T  G GY   + 
Sbjct: 181 FNECWGRDYLPSSRTLDQHISKLRKLIEIDPRQPRIIKTAHGVGYRFDKE 230


>gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
 gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas sp. SM9913]
          Length = 224

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL    G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKLDPD-GVLNPVETLRGRGYRLK 221


>gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens DSM 7]
 gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens TA208]
 gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus
           amyloliquefaciens LL3]
          Length = 239

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+KA+   ++ +L  E + N+      E+ IE  K    D ++LD+ +  + GFE
Sbjct: 6   ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R      P+  L+  SS  DK+ G   GADDYI+KPFN  EL ARIRA ++R+  
Sbjct: 66  ACTEIR-NYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTYK 124

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +            S +     + V G  +  + +  Q+++      +  L+K+     
Sbjct: 125 REEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYEK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      +   + V I KLR+K+       +YI TV G GY    +
Sbjct: 185 VWGYPSYGDNNTVMVHIRKLREKIEKDPSDPSYIVTVRGLGYRFIPD 231


>gi|209516256|ref|ZP_03265114.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
 gi|209503367|gb|EEA03365.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. H160]
          Length = 228

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 133/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMYLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +    +++  I +LR KL +       + TV G GYVL    + E+ 
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPSKLLHTVRGMGYVLEVRGEAESS 228


>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 223

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22]
 gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
 gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii
           Sb227]
 gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22]
 gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088]
 gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli
           FVEC1302]
          Length = 239

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 235


>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E     + D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  +   PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G+L +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGASG---EYIKTIYGVGYKL 221


>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
 gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
          Length = 232

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           IL+++D+  +   + + LK E F+++    G++ I   +     +D IILD+ + D+ GF
Sbjct: 7   ILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDLDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV + +R    + P+ +LS   ++ED+V GL  GADDY++KPF  EEL+AR++A++RR  
Sbjct: 67  EVCKIVRE-YSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRRVT 125

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              ++     L     LS+  + ++V V    + LT KE++++  L+L      T++  L
Sbjct: 126 TIEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRDDLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + +D  +  +R KL  A    N I TVWG GY   
Sbjct: 186 YLIWGEDYVGAQRTVDSHMKNIRSKLYAAGLKNNRIITVWGVGYKFV 232


>gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus
           NRRL 11379]
          Length = 236

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E F   V   G   +   + +    I++D+ L D  G +
Sbjct: 3   RVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR +    PV  L+   + EDK+ GL  G DDY++KPF+ EEL+ARIRA++RR+  
Sbjct: 63  ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAH 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A+ + +   DL ++ DA  V   G  + LT  E++++  L       L+K   L+H+++
Sbjct: 123 PAERAKVTFADLEIDDDAHEVRRHGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVWE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   ++  +I  LR+K+       + I+TV   GYV+R
Sbjct: 183 YDFGGSDAVVQTYISYLRRKI--DVFEPSLIQTVPRIGYVVR 222


>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G   +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|255281501|ref|ZP_05346056.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
 gi|255267989|gb|EET61194.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
           14469]
          Length = 229

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  + H I  + +           G + +   +   FD IILDL L  + G E
Sbjct: 3   KILISEDDADINHLIRSICEKNGLQTAQAFSGTEALLRLELESFDMIILDLMLPGMTGEE 62

Query: 62  VLRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L+ +R  K    PV +LS  SS+ DKV+ L  GADDY++KPF  EEL+ARI A +RR++
Sbjct: 63  LLKRIRAEKQPDIPVLVLSAKSSLADKVQLLTGGADDYMTKPFEPEELLARITACLRRAQ 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   I    L +   A+   V G  + LT  EY ++ LL+       ++E   
Sbjct: 123 RMPAAKPAADDISYKKLCICPAARRATVNGQELVLTPHEYDILLLLARELEKVFSRETLY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ G    E   ++V +  LRKK++       YI+TVWG G+ +
Sbjct: 183 ERVWQGGYYGEDNTVNVHVSNLRKKIAACDADNEYIKTVWGIGFKM 228


>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
 gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
           Full=OmpR-like protein
 gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
          Length = 249

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 25/247 (10%)

Query: 1   MRI-----------LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAII 49
           MRI           L+++D+  +   ++  L    ++V     GE+ +++   +  D II
Sbjct: 1   MRIENKQNKRQHHLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLII 60

Query: 50  LDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV 109
           LD+ +  + G+ V + +R      P+ +L+ +  + DKV GL+ GADDY+ KPF+  EL 
Sbjct: 61  LDVMMPKLDGYGVCQEIRKES-DIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELE 119

Query: 110 ARIRAIVRRSRGHAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
           ARI++I+RR +            +L  TG L+++L+ K +      I LT  E+ ++ELL
Sbjct: 120 ARIQSILRRIQTRNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELL 179

Query: 162 SLRKNTTLTKEMFLNHLYDG-----RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWG 216
             +     ++   L  ++           + +I+DV I +LR KL +       I T  G
Sbjct: 180 VSQSGKAFSRSKILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARG 239

Query: 217 RGYVLRE 223
            GY+ R+
Sbjct: 240 TGYLCRK 246


>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 230

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A +I   L+ + +   V   G +G ++      D +ILD+ L  I GFE
Sbjct: 3   KILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGINGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R++R  K + P+ +L+ +  IEDKV GL  GADDY+ KPF+  EL+AR+ A +RRS  
Sbjct: 63  VCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRSTL 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + +    +L+V+  ++ V+     I LT +E+ ++E L   +   + K    
Sbjct: 123 LEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDIT 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++   +P   +++V+I  LRKK+         I T  G GYVL+E 
Sbjct: 183 EQVWNLNFDPTTNVVEVYINYLRKKIDRDF-EPKLIHTRPGMGYVLKEE 230


>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 243

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+A  I + L+   F   V                DAI+LD  L    G  
Sbjct: 6   RILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWMLPGQSGLA 65

Query: 62  VLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R      + P+ +L+      DKV GL +GADDYI+KPF+ +EL+ARIRA++RR 
Sbjct: 66  LARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  G L ++     +  Q   + L   E++++  L        ++   L+ +
Sbjct: 126 APESVNDSVTVGALVLDAGTHRISFQNQELKLGPTEFKLLHYLMKHAERVHSRSTLLDKV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV + +LR+ L  A      +ETV G GY L
Sbjct: 186 WGDHVFIEERTVDVHVKRLREALGAAGT---MVETVRGAGYRL 225


>gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1]
 gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
          Length = 240

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51]
 gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 231

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD+ +++ + + LK E + V V +  ++G+ L      D ++LDLGL D  G  V
Sbjct: 7   VLLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGLPDKDGLVV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R     TP+ ++S     ++K+  L  GADDYI+KPF+  EL+ARIRA+ RR +  
Sbjct: 67  IREIRGFSG-TPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQQQ 125

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                        L+V+ + + V V G+ +HLT  EY++++L+   K   LT    +  +
Sbjct: 126 LAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   +  + K I VF+  LR+K+        +I T  G GY   + 
Sbjct: 186 WGYSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGYRFVDE 231


>gi|331087248|ref|ZP_08336318.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408934|gb|EGG88395.1| hypothetical protein HMPREF0987_02621 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 231

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DDK +  +IE+ L+ E +NV     G++ I++    E D +I+D+ +  + G   
Sbjct: 4   VLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-KNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S+   G L ++ + K V V G  I LT  EY ++ LL   +    +     
Sbjct: 123 GSTVVEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|148378962|ref|YP_001253503.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932237|ref|YP_001383344.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936363|ref|YP_001386892.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288446|emb|CAL82523.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928281|gb|ABS33781.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932277|gb|ABS37776.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 240

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 108/227 (47%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+I+D++ +   I  +LK E F  +Y     EDG +     E D IILD+ L D  G+
Sbjct: 10  KILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIMLPDGEGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  LS      DK+ G   G DDYI+KPF+ +EL  R++A +RR  
Sbjct: 70  ELCKTIRA-KSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++  G   +N+     +     I L  KE  +I   +   N  ++KE   
Sbjct: 129 YVENANEEKNILSFGPFELNISKAEFKKDREIIELKPKELALITFFAKHPNQIISKEKIC 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++          I V I +LR+K+        Y+  V G GY L 
Sbjct: 189 DNVWGEDYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKLV 235


>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 226

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +A  ++  L+   +   V   G  G +L     +D II+D+ L  I G 
Sbjct: 1   MHILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ R ++ +    P+ +L+ + + +DK+ G  +GADDY+ KPF+  EL ARIR +++R  
Sbjct: 61  DLCREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKRGS 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   + +++  G+L +NL  + V+     I+LT KE++++E +   K   L +      
Sbjct: 121 ASNSASTAILKAGELEMNLHTRIVKRGNVEINLTPKEFKLLEYMIRNKGRVLPRVEIAEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +     IDV+I  LR K+ + A  + YI T  G G++ +
Sbjct: 181 VWDTTFDTGTNFIDVYINYLRNKI-DKAFEEKYIHTKPGMGFIFK 224


>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 221

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +  EFD IILD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++++        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI+T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIKTIRGVGYKIEK 221


>gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
 gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
 gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus gasseri ATCC 33323]
 gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri
           202-4]
 gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri
           224-1]
 gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22]
          Length = 236

 Score =  256 bits (656), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 122/234 (52%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E + V +   G + +E+ K +   +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   +S P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  MEVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
           R         G         L ++ D + V    + +  LT KE+ ++  ++ +     +
Sbjct: 123 RIEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 129/229 (56%), Gaps = 10/229 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + +++ L  EN++V   + G+D I+L +    D I+LDL L D+ GF
Sbjct: 1   MKILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V+  ++      P+ +LS  + I D++ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +    + +I  G + + +  + V +    ++ T  E++++ L+        T+E 
Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++        + +D+ I ++RKKL N    +  I+T++G GY   
Sbjct: 181 LLDKIWGYDFSGNTRAVDIHIKRIRKKLLN---HEEAIKTIYGVGYRFE 226


>gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4]
 gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4]
          Length = 219

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L++  +   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGEQILATLENNGWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL AR+RA +RR+ 
Sbjct: 61  TVLRGIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  GDLS++  +  V  QG  + LT  EY+++          +++   + H+Y 
Sbjct: 121 GNPSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEHVYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|148240222|ref|YP_001225609.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848761|emb|CAK24312.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 125/234 (53%), Gaps = 10/234 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPG 59
           +RILL++D+  L   +++ L+ E ++V V   G  G+   +     D I+LD  L D  G
Sbjct: 9   IRILLVDDEARLTDLLKMELEVEGYDVVVASDGASGLFHARETPGPDLIVLDWNLPDFSG 68

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R + ++TP+ +L+G   I D+V  L +G DDY+ KPF+ EEL+AR+RA+ RR+
Sbjct: 69  IDICQRIRTSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRAMQRRA 128

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                    G     +  G+LS+N   + V      I L+ KEY+++  L   +   L +
Sbjct: 129 ITFAAVNGDGPQPETLSVGNLSMNTITRDVYRGERMIQLSVKEYELLNFLMRGQGKVLER 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +  ++      +  ++DV+I  LR+K+ +       I TV G G++LRE A
Sbjct: 189 AAIMRGVWGENFYGDDNLLDVYIRYLRQKVESK-DLPTLIHTVRGVGFILREEA 241


>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
           [Chloroflexus sp. Y-400-fl]
 gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
 gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
           [Chloroflexus sp. Y-400-fl]
          Length = 227

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L   I + L+ E ++V  T  G + I++ +    D +ILD+ L D+ G  V
Sbjct: 7   ILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGLTV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+ +L+  +  ED + GL  GADDY+ KPFN +EL+ARIRA++RR    
Sbjct: 67  CQKVREF-ASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPAT 125

Query: 123 AQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            + L V  +L S++   + V V+G  + LT  EYQ++ +L+      +T E  L  ++  
Sbjct: 126 NRPLTVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWGS 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + V+I  LR+K+         + T WG GY +  
Sbjct: 186 EPMRDNDYLKVYIWHLRRKIEIDPRQPQLLLTEWGVGYRMEP 227


>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 236

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + ++ED+  +   ++  L+   + V     G++G+   +    D +ILDL L D+PG E+
Sbjct: 5   VFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R+     P+ +LS  SS ED++ G+  GADDY++KPF+  E++ R+ AI+RR+R  
Sbjct: 65  CKQIRLTS-DVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123

Query: 123 AQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  I +    ++ ++   K V +    I LT  E+ +I +++       ++   L  + 
Sbjct: 124 NKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQ 183

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E   + IDV I  LRKKL        YI TV+G GY  
Sbjct: 184 EDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226


>gi|313807086|gb|EFS45581.1| response regulator receiver domain protein [Propionibacterium acnes
           HL087PA2]
          Length = 236

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD ALA  ++L+L  E F+      G D +++ + +    ++LDL L    G  +
Sbjct: 10  ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLMLPGRDGIRI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            + +R      P+ +L+  +   + V+GL +GADDY+ KPF   EL+ARIRA +R   SR
Sbjct: 70  CQDIRRESG-VPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVSR 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  GDL+++  A  V++ G  I LT  EY ++  ++   N   ++E  L  ++ 
Sbjct: 129 REEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +  + ++++V + +LR K+   A     I TV G GY +    ++
Sbjct: 189 YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVCGIGYRINTPGEE 235


>gi|317053265|ref|YP_004119032.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316953004|gb|ADU72476.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 230

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 133/230 (57%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLRRALGESGFTVDVSANGAEGLHFALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R +K  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRSSK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRS 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL V+L ++ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 ADGTDITQLQIHDLQVDLLSRRVFRLGTRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +D   + +  +++V I +LR K+ +       + TV G GYVL     D+
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DTPFAVRLLHTVRGMGYVLEVRPGDQ 228


>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
          Length = 265

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M++  LLIEDD A+   ++  ++ E + V     G +G+   +   FD +++D  L ++ 
Sbjct: 34  MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPEMD 93

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  V + +R      P+ ++S      DKV GLQ GADDYI+KPF+ EEL AR+ + +RR
Sbjct: 94  GLTVCQNIRWES-DVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHLRR 151

Query: 119 SRGH------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            R +       +       L ++   + V +    I LT KE+ +++LL+   + T TK+
Sbjct: 152 WRRYNKQEEVEEQTAYANGLIIDWQREIVSINQQEIALTQKEFALVKLLAKNPSQTFTKK 211

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +++      +   + V I  LR+KL+++     +I+TVWGRGY  
Sbjct: 212 ELYQYIWQQATLEDTHTVTVHIKALREKLNDSVRHPYFIQTVWGRGYRF 260


>gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VIETRRGQGYL 216


>gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein [Pseudonocardia
           sp. P1]
          Length = 225

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  ++  L +  F V V   G    +      FD ++LD+GL  + GF+
Sbjct: 4   RILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A  + PV IL+   S+ D V GL  GADDY++KPF  EEL+AR++  + R+R 
Sbjct: 64  VLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERARP 123

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +    L ++   + V + GH + L+ +E+ + E         L+++  L  ++ 
Sbjct: 124 APDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVWG 183

Query: 181 GRDEP---EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                      ++DV++  LR+KL     G ++I TV G GY L  
Sbjct: 184 SEYSAAATSSNVVDVYVRYLRRKL-----GPDWIATVRGAGYRLEP 224


>gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +I+D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WNYDFGGQANIVELYISYLRKKI--DAVHPPMIHTVRGAGYVIKP 244


>gi|269963791|ref|ZP_06178108.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269831471|gb|EEZ85613.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 256

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +++ LK +   V       D     +   FD +ILD GL D  G ++
Sbjct: 25  ILLVEDDDDLAELVQMHLKFQGHQVSRATNVADAKTQYQQQPFDLLILDRGLPDGDGLDI 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  +PV +L+      DKV GL++G DDYI+KPF+  E  AR+R ++RR    
Sbjct: 85  CHYLRQQQDWSPVLMLTARDGEMDKVDGLEAGVDDYITKPFSVLEFQARVRNVLRRVSQT 144

Query: 123 AQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  G L +  +   V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 145 AEVKAADEVLDDAMDFGPLRIIPELHQVSLNDKDVTLTATEFTLLQFLATRPGRVYSKDE 204

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  + 
Sbjct: 205 LLDHVWNTSHSGYHHTVCSTINRLRSKLSLSDSDHHFIQTVWGVGYKFQP 254


>gi|256848039|ref|ZP_05553483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
 gi|256715099|gb|EEU30076.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus coleohominis 101-4-CHN]
          Length = 237

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL++ED+ ++   + +  K E +       G   ++        +D ++LDL L    
Sbjct: 1   MNILMVEDNHSVCEMMAMFFKKEKWTAEFVYDGVKAVDKFNEDPQRWDLVLLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R      P+ +L+   S  D+V GL+ GAD+Y++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRISPVVPIIMLTARDSESDQVLGLEMGADEYVTKPFSPLTLIARIKALHRR 120

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                         +   I T    +N   +   +    I  LT KE+ +++ L+ +   
Sbjct: 121 IAMGNVGGKEPASESDFDIQTPHFKLNTKTREAFLNDQPIKDLTPKEFDLLKTLASKPKQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++E  L  +++     + + +D  I KLR+K+     G   I+TVWG GY   ++
Sbjct: 181 VFSREQLLQLVWNYEYYGDERTVDAHIKKLRQKIEQV--GPKVIQTVWGVGYKFDDS 235


>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
          Length = 231

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+K +A  +   L++E F V     G   +   +    D  +LD+ L DI GF+
Sbjct: 4   KIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDY++KPFN  E+VAR++  +RR + 
Sbjct: 64  LLQNIRKTHF-FPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + QS +           L + +++    + G  + LT  E++++  L   + + +  E  
Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       +   I +LR+KL+        I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLDNNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231


>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 232

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++A+   +++ LK   + V     GE+ + +      D  ++D GL D+ G E
Sbjct: 5   KILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDMEGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR      PV +L+   + EDK+  L +GADDY+ KPF   EL+ARIR  +R  +R
Sbjct: 65  VLRRLREWS-QMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    L+++L  + VE+ G  + LT  EY +++ L+      +T+   L H++ 
Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVWG 183

Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +     + V+I  LRKKL +       I T  G GY L     +
Sbjct: 184 DVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRLAVEPPE 231


>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 231

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 113/226 (50%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  +   L  E F  +V   G++     K    D +ILDL L    G  
Sbjct: 6   QVLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+      D++ GL  GADDY+ KPF+  E+VAR++A++RR+  
Sbjct: 66  ICKDVRKFS-HVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAAL 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A +++    + ++ +     + G  I LT  E+++++ L  +  T  ++E+ +
Sbjct: 125 GAPAEKTAPNILTFKHIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILM 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              Y+       + ID  +  LR K+S     +  +++V+G GY L
Sbjct: 185 QRCYEDARIVSNRTIDSHMKNLRNKISLVDDPQPILQSVYGVGYKL 230


>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 225

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL  A  G   I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-APAGFKPIDTVRGLGYLFNE 222


>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 226

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D+ A+  +I+  L++E F       G   I     +  D +ILD+GL DI 
Sbjct: 1   MKELILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIG 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ R +R    S P+  L+  +   D++ GL+ GADDYI+KPF+  E+ AR++A++RR
Sbjct: 61  GLELCRLIRQTS-SVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     ++   G  SVN   + +   G  + L+  EY+M++    R     ++E  +  +
Sbjct: 120 TSNPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  +    + ID  I  +R KL      +  I T  G GY LR++
Sbjct: 180 WENPECSLDRTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYALRDD 225


>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 242

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 5/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++  +    G D +E  + +    I+LDL L    G  +
Sbjct: 13  ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLMLPGCDGLTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++  S   D++ GL+ GADDYI KPF+  E+V R+R ++RR    
Sbjct: 73  CRTIRQFS-NVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGWQ 131

Query: 123 AQSLIVTGD----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              L         L ++         G  + LT  E+++++ LS       ++E  L+ L
Sbjct: 132 NDGLKAVEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGKVFSREALLDKL 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           YD       + ID  I  LR+KL       ++I TV+G GY       +E
Sbjct: 192 YDDYRVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWEAAPCNE 241


>gi|56540665|gb|AAV92786.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNMGRHQTWKDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEE 221


>gi|29833315|ref|NP_827949.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29610437|dbj|BAC74484.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 262

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 6/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  LA  +   L+ E + V     G   ++  +    DA++LD+ L D  GF 
Sbjct: 35  RVLVVDDDPDLAEVLSGALRYEGWEVRAAGDGARAVDEARDLLPDAVVLDVMLPDTDGFA 94

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  +    V  L+   ++ED++ G+ +G DDY++KPF+ EE+VAR+R ++RR+  
Sbjct: 95  VLRELRTVRPDVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLLRRAGM 154

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             Q      ++ GDL ++ +A+ V   G  I L+  E++++  L       L+K   L+ 
Sbjct: 155 ARQLDEGPRLIVGDLVMDEEAREVTRGGELIELSPTEFELLRFLLRNPRRVLSKAQILDR 214

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      +  +++++I  LRKK+   AG +  I TV G GYV++  A
Sbjct: 215 VWSYDFGGQAHVVELYISYLRKKV--DAGREPMIHTVRGAGYVIKPVA 260


>gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
 gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium
           HdN1]
          Length = 224

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED+  L   + + L    ++V     G++G+     Y +D  I+DLGL  I G 
Sbjct: 1   MRALIVEDEPHLQEQLAVALGRAGYSVDRASDGKEGLYFGTEYNYDIAIVDLGLPQIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R  R +    PV +L+  SS +DKV GL+ GADDY+ KPF  EE+VAR  A+VRR+ 
Sbjct: 61  DVIRRWRESNRIFPVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G + ++ + K V +    + LT  EY+++E L +     ++K +   H+Y 
Sbjct: 121 GITQSSIRLGPIELDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   I+VFI +LRKKL      K  IETV G GY +  +
Sbjct: 181 QDFERDSNTIEVFIGRLRKKLDPDNQWKP-IETVRGMGYRMNPS 223


>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
 gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
          Length = 224

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
 gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 233

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + ++L SE ++V     G++ I++    + D  ILD+ +  I G++
Sbjct: 5   KILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV-SDDIDLYILDIMMPIINGYQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+  L+      DK  G  SG DDY+SKPF+  EL  R++A++RR   
Sbjct: 64  ACVEIR-KKSNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRRYYV 122

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    IV  ++++N +++ V + G +I LT  EYQ++ LL   +    + +
Sbjct: 123 YQGKMEKEENNDDNIVYNNITINPNSEAVYLNGEQIELTYLEYQILYLLLSNRKRIFSTQ 182

Query: 173 MFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +++          I V I  LRKK+ +       I+T+WG+GY 
Sbjct: 183 TLYESIWNEPYYYSANNTIMVHIRNLRKKIESDPQNPKIIKTIWGKGYR 231


>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
          Length = 230

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ LK+E   V+    G D + L + ++   II+D+ +  + G  
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K + V G  I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+   +    Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230


>gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931]
          Length = 245

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++DDK +   +E+  ++E +       G D I       +   +ILDL + ++ G 
Sbjct: 18  KILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTMPDISLVILDLMMPEMNGM 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS 
Sbjct: 78  DVIRQVRKDS-SIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 121 GH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++  G L +N D+  V  ++G +I LT  E+ ++ LL+   N   + +   
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIF 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        K + V +  LR K+  A GG+  IETVWG GY + 
Sbjct: 197 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 243


>gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3]
 gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153]
 gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
          Length = 228

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+I++++DDK +   + + LK+E +       G++ + ++    +   +ILD+ +  I G
Sbjct: 1   MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPGITG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ ++S  +   DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKELRKDS-DIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 241

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 115/234 (49%), Gaps = 8/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L+   F V     G++   L +   F  ++LDL L    G  +
Sbjct: 9   ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLMLPGEDGLTL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR    S PV +L+ M    D++ GL+ GADDY++KPFN  EL+ARIRA++RR    
Sbjct: 69  CRDLRARS-SLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANLM 127

Query: 119 --SRGHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             S+      +      ++L  +  V+  G  I L+  E+ ++++   R    L+++  L
Sbjct: 128 PDSQEELPERLHFDHWQLDLARRELVDEHGVAISLSTAEFDLLKVFLERPKRVLSRDQLL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +       +   + ID  + +LR+KL         I+TVWG GY+     + ++
Sbjct: 188 DMARGREAQAFDRAIDTLVSRLRRKLEVDPKKPELIKTVWGGGYMFSAEVRHDS 241


>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 241

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/240 (31%), Positives = 126/240 (52%), Gaps = 13/240 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-----YEFDAIILDLGLTD 56
           +ILL++D+  L  ++  +LK E ++V V + GE  +   +        +D +ILD  L  
Sbjct: 3   QILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWMLPK 62

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EV + LR     TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++
Sbjct: 63  LSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALL 122

Query: 117 RRSRGHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RRS   +Q+        I    L ++L+++    QG  I L+ KE Q++  L    +  L
Sbjct: 123 RRSEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQLL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           T +    HL+   D+P   ++   I  LR+K+  A      I T++G+GY      + E 
Sbjct: 183 THDQIYQHLWPSGDQPSSNVLAAQIRLLRRKI-AAKNSPPLIHTIYGKGYWFGAKVEAEP 241


>gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 223

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD   A +++  LK       +   G+ G++  K    D IILD  +  + G 
Sbjct: 1   MKVLIVEDDNEAATNMQRGLKEAGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR      PV  LS +  +ED+V GL++GADDY+ KP+   ELVAR+ A+ RR  
Sbjct: 61  TMLQQLRSEGTDVPVLFLSALGELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKD 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  +++  GDL +NL ++ V+ Q   I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 KDAVDTVLRVGDLEMNLISRVVKRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +P+  +IDV I +LR KL         + TV G GY L+
Sbjct: 181 AYHFDPQTNVIDVHISRLRSKLDKDFDRP-MLHTVRGEGYQLK 222


>gi|240850128|ref|YP_002971521.1| two-component response regulator [Bartonella grahamii as4aup]
 gi|240267251|gb|ACS50839.1| two-component response regulator [Bartonella grahamii as4aup]
          Length = 228

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD    H +E        +V V   G+ G  L     +D +++D  L    G 
Sbjct: 1   MKILVIEDDHETGHYLEKAFLEVGHSVDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIIAELRAKGNETPVLILSALGQVNDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   G+L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+         + TV G GY+L+  
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAP 224


>gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 248

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D I++D  L    G 
Sbjct: 24  MKILIIEDDLEAAVYLTKAFREAGIVADHASDGEAGLFMGSENTYDVIVIDRMLPRRDGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 84  SVISELRRKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 143

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++    DL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 144 TPDQDVVYRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 204 DYHFDPQTNVIDVHVSRLRSKIEKDYSQP-LLKTIRGAGYMIKDEG 248


>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
           Paraca]
 gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
          Length = 253

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ A+   +   L    ++V     G   IE+      D ++LD+ +  + G+ 
Sbjct: 15  KILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGYG 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ +  + D++ GL+ GADDY++KPF+ +EL ARI AI+RR + 
Sbjct: 75  VCQKIREIS-DIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +A S       I    L ++   + V      + LT  E+ ++ELL  R    +++   L
Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193

Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+    R   +++++DV + +LR K+        YI TV G GY
Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239


>gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
 gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. WH 8109]
          Length = 262

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 10/238 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR    +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS            ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPVGSSNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L   A  +
Sbjct: 181 PSLILKEVWGYEPDDDIEAIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPASTQ 238


>gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori]
 gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L++N+    V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+  A      I TV G GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVATEE 221


>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
 gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. WH 5701]
          Length = 263

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 9/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +    +   F V   D G  G  L      D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ +   +DKV G  SGADDY++KPF+ EEL+ R++A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALL 120

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RRS           ++  G L++  +          + LT  E++++  L  R   T+  
Sbjct: 121 RRSDRAPLSTKHSEILSYGPLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 SLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231


>gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
 gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM
           14600]
          Length = 250

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 115/227 (50%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L++EDD A+  S+E  L+ +   V      E+ ++  +   +D ++LD+ L D  G+
Sbjct: 21  IHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKLQERPYDLVLLDITLPDGSGY 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  A++     TPV  L+        V G   GA+DYI+KPF   ELV+RIR ++R ++
Sbjct: 81  SVCNAVKRD-YQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRHTK 139

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++    DL V+LD+  V      + L+  EY+++ +    +   L++   L   +D
Sbjct: 140 RQS-NIERVQDLRVDLDSGRVFKGEQELSLSAMEYRLLGIFLENRGRILSRSQLLEAAWD 198

Query: 181 G-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              D      + V+I +LR+K+ +       I TV G GY + ++ K
Sbjct: 199 FAGDYVNDNTLSVYIKRLREKIESDPQNPTMIRTVRGLGYRMEDSTK 245


>gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 131/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L+ ++  +L +  ++V     GEDG++      +D I+LD  L  + G 
Sbjct: 1   MKLLLVEDERELSEALFQILTNNKYSVDAVYDGEDGLDYALTGVYDVIVLDTMLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR + ISTPV +L+  S IED+VRGL  GADDY++KPF  EEL+AR+R+I RR  
Sbjct: 61  SLLKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKG 120

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 I   GD+S+NLD   ++V    I LT KE+++I+    R    ++K+  +  L+
Sbjct: 121 NVVNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E   I+V+I  +RKKL         I T+ G GY + ++
Sbjct: 181 GFDSEVEYNNIEVYISFIRKKL-TYLKSNVSIVTIRGVGYRMEDS 224


>gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046]
 gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G]
          Length = 223

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
 gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
          Length = 238

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K +A  +E  L++E+F ++      +  E     E D  ++D+ + +I GF 
Sbjct: 11  KILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVMMPEIDGFT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   PV +L+      DK+ GL  GADDYI+KPF   E+VAR++A +RR + 
Sbjct: 71  LCRQIRE-RYHFPVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQLRRYKR 129

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           + Q      S+I+   L +N+      +    + LT  E+ ++ +L   +   ++ E   
Sbjct: 130 YNQASERDDSVILVSGLMLNVKTHKCTLNEEALSLTPTEFDILRILCENRGEVVSAESLF 189

Query: 176 NHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++           + V I  LR+K+ ++     YI+TVWG GY + 
Sbjct: 190 RQIWADEYYVKNNNTVTVHIRHLREKMKDSFENPRYIKTVWGCGYKIE 237


>gi|322435322|ref|YP_004217534.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321163049|gb|ADW68754.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 239

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/223 (25%), Positives = 115/223 (51%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  ++  ++  L+S  F V      +  +   +       +LD+ +    G ++
Sbjct: 10  IFVLEDDADISRLVQYHLESAGFTVRPYAAIQQIVSDAERQPPSLFLLDIMVPGGDGLDL 69

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            R LR+       P+  L+  ++  D+V+GL+ GADDYI+KPF   ELVAR++A++RR  
Sbjct: 70  CRRLRLNPTLSVVPIIFLTARAAENDRVQGLELGADDYITKPFATRELVARVKAVLRRFE 129

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R    S++    + ++  A  + V+G  +  T  E+++++ L+       +++  L+ ++
Sbjct: 130 RPTTPSILKFEQIEIDAGAMQLRVKGELVTTTATEFRLLDYLARHPGRVFSRDHLLDAVW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + +DV++ ++R+K+   A    Y++T+ G GY   
Sbjct: 190 GDARFVTPRSVDVYVRRIREKIEEDAETPRYLKTMRGAGYRFE 232


>gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC
           BAA-895]
 gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895]
          Length = 240

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  ++       D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L     L V+        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQLDAQSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D       + ID  I  LR+KL +    +++I  V+G GY    +
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEAD 235


>gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 249

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L   I   L+   + V     G   +   +    D +ILDLGL  + G 
Sbjct: 18  MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R  R   + TP+ +LS      D+  GL  GADDY+ KPF+  EL+AR RA++RRS 
Sbjct: 78  GVIRTARARAVDTPILVLSARERAADRALGLDVGADDYLGKPFDTNELLARTRALLRRSA 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G L ++    +V   G  + LT +E+ ++ LL  ++   + +E    HLY 
Sbjct: 138 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++     +DV + +LR+KLS A      I T+ G GY L E
Sbjct: 198 WDEDVASNAVDVHVHQLRRKLSAA-----VIRTIRGIGYALDE 235


>gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct]
          Length = 230

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/230 (36%), Positives = 131/230 (56%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  +   L  + F V + D G DG  L    E+D I+LD+ L  + G+
Sbjct: 1   MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  +  TPV +L+    +ED+VRGL+ GADDY+ KPF+  ELVAR++A+ RR  
Sbjct: 61  GVLRALRERR-QTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGG 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H   S +   DLS++L ++ V     R+ LT KEY ++ +L+ R    L+K      ++
Sbjct: 120 NHESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +++V I +LR KL +       + T+ G GYVL   A  E+
Sbjct: 180 DINLDTDTNVVEVAIKRLRAKL-DGPFENKLLHTIRGMGYVLENRALAES 228


>gi|325663729|ref|ZP_08152133.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470222|gb|EGC73455.1| hypothetical protein HMPREF0490_02874 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 231

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DDK +  +IE+ L+ E +NV     G++ I++    E D +I+D+ +  + G   
Sbjct: 4   VLVCDDDKEIVEAIEIYLRQEGYNVLKAYDGQEAIKVLDSTEVDLLIIDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-KNSLPIIILSAKSEDADKILGLNVGADDYLTKPFNPLELVARVKSQLRRYTQL 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S+   G L ++ + K V V G  I LT  EY ++ LL   +    +     
Sbjct: 123 GSTVIEKKSSVFTVGGLKIDDELKEVTVDGDVIRLTPIEYNILLLLVKNQGKVFSINQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 ESIWNEDAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230


>gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627]
 gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627]
          Length = 223

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-KTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  ++ V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY L 
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFNEKLIATIRGMGYSLV 219


>gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
 gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3]
          Length = 219

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+  ++   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGQQIIETLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H+Y 
Sbjct: 121 GSAAPVLQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTVEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas
           arsenicoxydans]
 gi|133737759|emb|CAL60804.1| Heavy metal response transcriptional activator protein
           [Herminiimonas arsenicoxydans]
          Length = 231

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  +   +   L    F V +   G DG+ +      D I+LD+ L  + G+
Sbjct: 1   MRILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGW 60

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+L ALR    K   PV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++RR
Sbjct: 61  ELLTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S    +  I  GD+ +++  + V   G RI LT KE+ ++ LL+ R++  L++ +  + +
Sbjct: 121 SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   E +  +ID  + +LR K+ +       I T  G GYV
Sbjct: 181 WDINFESDTNVIDAAVRRLRSKI-DDPFETKLIHTQRGMGYV 221


>gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 219

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 128/221 (57%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDKA+ + +   L  +++ V   + G D +EL +    D +ILD+ L +  G E+
Sbjct: 2   IYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVMLPEKDGLEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    S P+ +L+      DKV GL+SGADDYI+KPF+  EL++R++A++RRS   
Sbjct: 62  LKEIREFS-SIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSEKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +  G + +N+  +TV+V G +I LT KE++M+ L        +T+E FL  ++   
Sbjct: 121 DREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL +A      I+TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRNKLKSAGEN---IKTVRNLGYKLGE 218


>gi|299066501|emb|CBJ37691.1| DNA-binding response regulator in two-component regulatory system
           with phoR [Ralstonia solanacearum CMR15]
          Length = 230

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 102/228 (44%), Gaps = 10/228 (4%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED+ A+A  I + L+            E  + L      D ++LD  L    G    + L
Sbjct: 2   EDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMFAKEL 61

Query: 67  RVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-A 123
           R  + +   P+ +L+  S  +DK+ GL  GADDY++KPF+ +EL+ARI+A++RR      
Sbjct: 62  RANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRAPQLT 121

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHR------IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++    L ++     V            + L   E++++  L        ++   L+ 
Sbjct: 122 DDVVAINGLRLDPATHRVTAMNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLLDQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      E + +DV I +LR  L+   G    IETV G GY L  N 
Sbjct: 182 VWGDHVFVEERTVDVHIKRLRAALAP-GGYSTMIETVRGSGYRLARNP 228


>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D++++   I++ L+ E F ++    G + I L K      IILD+ L  I G+
Sbjct: 9   IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   ++   ++  + +L+    I+D+V+GL  GADDY+ KPF+ +EL+ARI A +R S 
Sbjct: 69  EVCSEIKKW-VNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSL 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+  +N  A  +  + + + L+  EY +++ L       L+K   L  ++ 
Sbjct: 128 PELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +V I++V+I  LR K+ +     + I TV G GY 
Sbjct: 188 FDFNGDVNIVEVYIRYLRDKIGDN--EHSIIRTVRGVGYK 225


>gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a
           winged-helix DNA-binding domain-protein [uncultured
           Pseudomonadales bacterium HF0500_12O04]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L    + +     G D +   +   +D IILDLGL  I G 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRSGYALDWLADGRDALYQGQSEPYDLIILDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+  SS  +++ GL++GADDY++KPF+ EEL+ R++A++RRS 
Sbjct: 61  EVLKQWRAQGLATPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q L+    L ++   + V   G ++ LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPLLKCAGLHLDEARQCVINDGAQVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+ 
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIF 217


>gi|167996917|gb|ACA14308.1| two component heavy metal transcriptional regulator [uncultured
           bacterium]
          Length = 253

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   I+  L    F V     G DG       EF  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEIKLGEYIKKGLTEAGFIVDHHTTGLDGYHALMTDEFSVVLMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R  R A   TPV  L+    + DK++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELVRNYRAAGKHTPVLFLTAKDDLSDKIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL +++  +TV      I LT KE+ +++ L  R+   L + +  + +
Sbjct: 121 QSDYKSTIMHIADLKMDIAKRTVHRGDTAIKLTAKEFSLLQFLLERQGEVLPRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+ +    K  I TV G GY L
Sbjct: 181 WDMNFDSDTNVIDVAIRRLRLKIDDEFAIK-LIHTVRGMGYRL 222


>gi|90962136|ref|YP_536052.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90821330|gb|ABD99969.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 239

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M++L+IED+K++   + +  + E ++V     G   +E  K    E+D I LDL L  + 
Sbjct: 1   MKLLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ IL+   S  D++ GL+ GAD+Y+SKPF+   L+ARI+A+ RR
Sbjct: 61  GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120

Query: 119 SRGHA-----------QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           ++  A              + T    +N   +   +  +RI  LT KE+ ++ +L+ +  
Sbjct: 121 AQISALGSSKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +   
Sbjct: 181 QVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDTEA 238

Query: 227 D 227
           +
Sbjct: 239 E 239


>gi|15888321|ref|NP_354002.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155989|gb|AAK86787.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 252

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVLVIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+ARI  + RR  
Sbjct: 88  SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q +I   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 148 KPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFEKP-LLKTIRGAGYMMKDEG 252


>gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
 gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii
           ATCC 43553]
          Length = 229

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ LA  ++  L   N+ V V   G  G+ L +  ++D I+LD+ L  + GF
Sbjct: 1   MKILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL  LR      PV +L+    +ED+VRGLQ GADDY+ KPF   EL+AR+ A+ RR  
Sbjct: 61  DVLHELR-KSDRVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRRG 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+++  GDL ++L  +     G R+ LT KE+ ++ LL  ++   L++    
Sbjct: 120 HIVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDLA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D        +++V + +LR K+ +       + TV G GYVL 
Sbjct: 180 EQVWDINFNSNTNVVEVAVRRLRGKV-DDPFETKVLHTVRGMGYVLE 225


>gi|227891159|ref|ZP_04008964.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|227867033|gb|EEJ74454.1| response regulator [Lactobacillus salivarius ATCC 11741]
 gi|300214820|gb|ADJ79236.1| Two-component response regulator [Lactobacillus salivarius CECT
           5713]
          Length = 239

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M++L+IED+K++   + +  + E ++V     G   +E  K    E+D I LDL L  + 
Sbjct: 1   MKLLMIEDNKSVCEMMSMFFEKEKWDVEYAYDGISAVEKFKEKSDEWDMITLDLNLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ IL+   S  D++ GL+ GAD+Y+SKPF+   L+ARI+A+ RR
Sbjct: 61  GMQVNAEIRKISSTVPIIILTARDSESDQILGLEMGADEYVSKPFSPITLIARIKALHRR 120

Query: 119 SRGHA-----------QSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
           ++  A              + T    +N   +   +  +RI  LT KE+ ++ +L+ +  
Sbjct: 121 AQISALGSNKQNKVDDDFDVKTDHFKLNSSTREAYLNDNRIDGLTPKEFDLLRVLAKKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              ++E  L  ++D     + + +D  I KLR+K+     G   I+TVWG GY   +   
Sbjct: 181 QVFSREQLLQLVWDYEYYGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDTEA 238

Query: 227 D 227
           +
Sbjct: 239 E 239


>gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
 gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype']
          Length = 221

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L+ ++ L LK+ N+ V     G D +      + D ++LDLGL D  G 
Sbjct: 1   MRILLVEDDRPLSDALALSLKNANYAVDCVYTGADAMTTLSIGQTDIVVLDLGLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R    + PV IL+    + DK+ GL +GADDY+ KPF  +EL+AR+R + RR  
Sbjct: 61  NVLKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +Q++I   ++S++    T+ +    IHL  +E  +++ L       L+K    N LY+
Sbjct: 121 TASQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V +  LRKK+ +      +I+T+ G GY + ++ +
Sbjct: 181 WGEEVASNTIEVHVSHLRKKMPDN-----FIKTIRGVGYCISKSGE 221


>gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M I +IED+  + + ++  L+ E +NV +   GEDG+ +      D ++LD  L  + G 
Sbjct: 1   MHIAIIEDEIGITNFLKQGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R A  STP+  L+   +I + + GLQ+GA+DYI KPF+  EL+ARI     R +
Sbjct: 61  DVCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHF-REK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G++ +N     V   G  I LT +E++++E L   K    ++++ +  +++
Sbjct: 120 EVLKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  +IDVFI  +RKKLS     + YI+T+ G GY+
Sbjct: 180 IDFDYDTGVIDVFINAIRKKLSMD-KDEGYIKTIRGVGYI 218


>gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes
           HL056PA1]
          Length = 243

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA +RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRAPLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHKPMIHTMRGAGYVLKP 241


>gi|262045791|ref|ZP_06018755.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|260573750|gb|EEX30306.1| response regulator [Lactobacillus crispatus MV-3A-US]
          Length = 240

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 117/236 (49%), Gaps = 15/236 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G
Sbjct: 4   RILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR 
Sbjct: 64  IQVAKEVRAILPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123

Query: 120 RGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
               +            I T  L ++ + + V      +  LT KE+ ++  ++ +    
Sbjct: 124 MMEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 184 FSRDQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 237


>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
 gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
           [Marinobacter algicola DG893]
          Length = 230

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I + L+  +++        +   L    + D I+LD  L    G E+
Sbjct: 6   VLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGTSGVEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  + +   P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTT 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ I    L+++     V  +   +++   EY++++     +    T+   L+ ++
Sbjct: 126 PPGVETPIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVYTRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            G    E + +DV I +LRK L +       I+TV G GY     A
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDQYDH--LIQTVRGTGYRFSTRA 229


>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
 gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
           [Asticcacaulis biprosthecum C19]
          Length = 229

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  I++ ED+ AL+  +   L+ E +   +   G++ + + K  + D ++ D  +  + 
Sbjct: 1   MRPYIIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKVS 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV R LR A  +   P+ +L+  S   D++RGL +GADDY+ KPF+  E +ARIRA++
Sbjct: 61  GIEVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVL 120

Query: 117 RRSR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR R G +   +  G++SV+  +  V+  G  IHL   EY++++          ++E  L
Sbjct: 121 RRIRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LRK L N     + I TV   GY L
Sbjct: 181 DAVWGNDVYVEARTVDVHIGRLRKAL-NKGDEYDPIRTVRSAGYSL 225


>gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 223

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ LA  +   L +  ++ +    G   +   +    D I+LDL L    G E
Sbjct: 3   RILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLMLPGRDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +++      D++ GL+ GADDY+ KPF+  E+VAR++A++RR+  
Sbjct: 63  ICKEIRTFS-TVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREVVARVKAVLRRTSA 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +      L V+     V + GH + LT  E++++  L        ++E  +  +Y  
Sbjct: 122 RTPAP---HGLRVDASTMRVSLDGHHLDLTAVEFKLLAFLLAHPGRIYSREQLMEGMYPD 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     + ID  I KLR+KL  A  G N I +V+G GY    + +
Sbjct: 179 QRIVNDRTIDSHIKKLRRKLDLARSGCNLIRSVYGVGYTFDPDPE 223


>gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Megamonas hypermegale
           ART12/1]
          Length = 231

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I  +EDD+++   +   L+S  F        E+   + K    D I+LD+ L  I G E
Sbjct: 3   KIYCVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNVPDLILLDIMLPGIDGIE 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ +R    +  TP+ +L+   S  DK+ GL +GADDY++KPF   EL+ARI+A++RRS
Sbjct: 63  ILKEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLRRS 122

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   +         G L +N D   V V    + LT KE++++  L   KN  +++
Sbjct: 123 AKINVAQDKATNDLSASNGLLVLNHDFHKVYVNNEEVILTLKEFELLYYLLKNKNIVISR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  ++ ++D     E + +DV I  LR KL  A+     IET+ G GY +
Sbjct: 183 DKIMDEVWDYNYAAETRTVDVHIKTLRHKLGVAS---KLIETIRGVGYKI 229


>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD         +L+   + V      +  ++    +  D I+LD+ +    GF
Sbjct: 1   MYILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKSNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R      P+  LSG S ++D+V GLQ G DDY+ KP+   EL+AR+ A++RR  
Sbjct: 61  DICRQIRR-NSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  S +  GDL+++          G  I LT  E++++  L       L     L+
Sbjct: 120 SDLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELTPLEFRLLYYLMKNAGRILNVSQILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++ V+I +LR K+        Y+ TV   GY   
Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRTKIERDPEHPTYVITVRNLGYKFE 225


>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 244

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 113/236 (47%), Gaps = 19/236 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + L L+SE + V     G + +   K    D ++LD+ +  I G++V
Sbjct: 11  ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR +R    + PV ++S      DK+ GL  GADDY++KPFN  E +AR+R+ +RR+ G 
Sbjct: 71  LRRVRETS-ALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGM 129

Query: 122 ---------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                              ++   DL+++LDA  +      + LT  E++M+ L      
Sbjct: 130 PAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPG 189

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              TK+      +          + V I KLR KLS+  G   YI TV G GY + 
Sbjct: 190 RVFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRME 243


>gi|254976162|ref|ZP_05272634.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093552|ref|ZP_05323030.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315295|ref|ZP_05356878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517963|ref|ZP_05385639.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651079|ref|ZP_05397981.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684144|ref|YP_003215429.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687803|ref|YP_003218937.1| two-component response regulator [Clostridium difficile R20291]
 gi|260210307|emb|CBA64619.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213820|emb|CBE05796.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 114/234 (48%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G  +
Sbjct: 6   ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGITL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR    + PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TMRLRE-NYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 124

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          S+   G L +N + K V + G  I  T  E++++ LL        
Sbjct: 125 LNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++         + V +  +R+K+        Y++ VWG GY + +
Sbjct: 185 SADEIYERVWNEN-AINTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 237


>gi|71279233|ref|YP_269868.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71144973|gb|AAZ25446.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 238

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ L+  +   L SE F+V     G+   +  K +  D IILD+ L    GF 
Sbjct: 10  KILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGFG 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R LR    + PV +L+  S+  D+V GL+ GADDY+ KP     L+AR+ A++RR   
Sbjct: 70  VCRDLRPE-FNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGDL 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++   +  I  G L +N  ++ V +Q   + LT +E+ ++ LL+ +      ++     
Sbjct: 129 PNQSEEKGEITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQNRDYIYKA 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +     +   + +DV I +LRKKL ++      I+T+WG+GY+   +A 
Sbjct: 189 VIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDAW 237


>gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565]
 gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565]
          Length = 228

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++  L+   + V     G   +   K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMQDALRHSGYTVDWLQQGLPALAALKSDEFAALILDLNLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR      PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  GD+ +  +++ V  QG  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  E   ++V I  LRKK  +       I  + G GY++
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSD-----LIRNIRGVGYII 216


>gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 245

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 20  RVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 80  VCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 138

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+   +HLT  E+ ++  L+      L++E  
Sbjct: 139 AALAAVTPRSGILRLGELEIDHAQRRVRVRADDVHLTPTEFDLLVCLANTPRAVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 199 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 245


>gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 219

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   ++  G D +      E+DA++LDLGL  + G 
Sbjct: 1   MKILVVEDDPRLGEQIIESLEKTGWVPELSQDGIDALYRATSEEWDAMVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  QG  + LT  EY+++       +  +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++RKK+       N I+TV G GY L  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APNIIKTVRGLGYQLNAN 219


>gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 222

 Score =  256 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/219 (36%), Positives = 120/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD++L+ ++   L+SE + V         +      EF  +ILDLGL D+ G 
Sbjct: 1   MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR     K S P  IL+   S+ DK+ GL SGADDY++KPF+ +EL+AR+R + RR  
Sbjct: 61  EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SLI  G++ ++L    V    +   L+ +E+ +++ L        +K      LY+
Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             DE     I+V I  LRKKL      K++I+T+ G GY
Sbjct: 181 WGDELSSNAIEVHIHNLRKKL-----PKDFIKTIRGVGY 214


>gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218]
          Length = 219

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+   +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDARLGEQIIASLEQTGWVPELSQDGIDALYRATSEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++  +  V  +G  I+LT  EY+++          +++   + H+Y 
Sbjct: 121 GNASPVMQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+       N I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APNIIKTVRGLGYQL 216


>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 261

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 124/228 (54%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+K++   +   L+  ++ V   + G + ++L +  + D ++LD+GL  + GF V
Sbjct: 23  ILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDGFSV 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +  P+ I+S   S  DKV+G   GADDYI KPF+  EL+AR++A +RR + +
Sbjct: 83  CRVLRED-LHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRREQRY 141

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            Q       + +G LS++++   V      + L+ KE++++ LL+        +++  + 
Sbjct: 142 RQPKRRMALLKSGGLSIDMERHEVSSGTTSLALSRKEFEVLCLLARHAGQVFARDVIFDR 201

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++    E  ++ +   I ++R KL+       YI+T+WG GY    + 
Sbjct: 202 VWQDDTESYLETVTEHIKRIRSKLARVDAHTEYIKTIWGVGYKWEPSV 249


>gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 226

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  +++ L    + V     GE+   L     +D ++LDLGL  I G 
Sbjct: 1   MRVLLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G L ++  A    V G  + LT  EY+++  + + +   +++   + HLYD
Sbjct: 121 GIASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
              + +   I+VFI +LRKK+ +       IETV G GY L     + E  
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKVGSD-----RIETVRGLGYRLTPLTGESEAA 226


>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    +E + V     G++ + L +  E   +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-QVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILT 123

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +S  +    +    + V+  ++ V ++G  I+LT  E++++      +   LT+E  ++
Sbjct: 124 SKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL + A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGDKA---KYITTVVRMGYKFEGNV 229


>gi|262203510|ref|YP_003274718.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262086857|gb|ACY22825.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F  +V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDAALAEMLTIVLRGEGFEPFVVGDGTQALTAVREIRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARVRARLRRTDE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  G + +++ A  V   G  I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAELLSIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|197285086|ref|YP_002150958.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227355501|ref|ZP_03839896.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
 gi|194682573|emb|CAR42615.1| two-component response regulator of kdp operon [Proteus mirabilis
           HI4320]
 gi|227164297|gb|EEI49186.1| two-component response regulator of kdp operon [Proteus mirabilis
           ATCC 29906]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + L L++E F VY     + G+      + D +ILDLGL D  G   
Sbjct: 6   ILIVEDEKEILRFVRLALENEGFRVYDASECQRGLIEAASRKPDLVILDLGLPDKDGLCF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           ++  R    STP+ +LS   S +DKV  L +GADDY++KPF   EL+AR+RA +RR   +
Sbjct: 66  IQDFRQWS-STPIIVLSARDSEQDKVDALDAGADDYLTKPFGMSELLARVRASLRRFVKQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +    GD++++   + V  QG  IH T  E++++  L       LT+   + H++ 
Sbjct: 125 ETETTQFTFGDITIDWVKRIVTRQGVPIHFTPTEFRLLSELVNNSGKVLTQRHLMQHVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+K+        ++ T  G GY  
Sbjct: 185 PNFVEHSHYLRIYMGHLRQKIETDPTCPVHLITETGIGYRF 225


>gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQRWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VIETRRGQGYL 216


>gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A ++   L+ +   V       D     +    DA++LD+GL D  G +
Sbjct: 6   RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A  + P+ +LS      D+V GL+ GADDY++KPF+  ELVAR RA++RR++ 
Sbjct: 66  WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQR 125

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A +       S++   + V +QG  + LT +EYQ++  L  R    L++E  L+
Sbjct: 126 LQPAPTASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    +   + +D  +  LR KL   A  +++I T  G GY L
Sbjct: 186 SIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230


>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 243

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ +   + + L+   F+V      E    + + +    ++LD  L    G  
Sbjct: 9   RVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLA 68

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R LR  + +   P+ +L+      D+V GL+SGADDY++KPF+  ELVAR+ A++RRS
Sbjct: 69  WCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRS 128

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            G  A   +  G L V+L A  V     ++HL   E++++ L         +++M L+ +
Sbjct: 129 YGGTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  +   E + +DV I +LR+ L    G    IETV G GY 
Sbjct: 189 WGRQSFVEERTVDVHIRRLRRGLE-HHGYAQIIETVRGEGYR 229


>gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae
           86-028NP]
 gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           86-028NP]
          Length = 221

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSASYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
 gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
          Length = 373

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 115/216 (53%), Gaps = 5/216 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A+ + + L    + V   D   +G+   +    D I+LDLGL D  G +
Sbjct: 5   RILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR    + P+ +L+   ++E+KVR L  GADDY+ KPF+ +EL+AR++  +R    
Sbjct: 65  VVQRLR-KNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR---Q 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL+++   + V  +G  + L+ KE+ ++ LL  +     +++     ++ G
Sbjct: 121 RTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           R      ++DV +  LR KL +  G    + TV G 
Sbjct: 181 RLPEGSNVVDVHMANLRAKLRDLDGY-GLLRTVRGV 215


>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  +   L  E F   V   G++  +  +    D +ILDL L    G  
Sbjct: 6   QILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLMLPGKDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+      D++ GL  GADDY+ KPF+  E+VAR++AI+RR+  
Sbjct: 66  ICKDVRKFS-QVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATF 124

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A S     ++    +S+N +    E+      LT  E+++++ L  R  T  ++E  + 
Sbjct: 125 AAPSSDETCILTFKHISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y+       + ID  +  LR K++     +  +++V+G GY L
Sbjct: 185 SCYEDARIVSNRTIDSHMKNLRNKVALTNDPQPILQSVYGVGYKL 229


>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 240

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 116/237 (48%), Gaps = 16/237 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ +++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 5   VLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMPGIDGLQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TPV +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 65  CRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSPV 124

Query: 123 AQ---------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           A                  +    + ++  A+        + LT  E++++ELL      
Sbjct: 125 AAGSAPAAEEAPKAAPGRFLEAAGIRMDPQARRAWRGERELELTRTEFELLELLVRNAGI 184

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            L      + ++     P  K + V++  LR+KL +  G    I TV G GYVLRE+
Sbjct: 185 VLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPLLIHTVRGVGYVLRED 240


>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
           [Arthrospira platensis NIES-39]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L +S+   L  E + V     G     L + + +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+   LR  +  TP+  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  GDL  + + +        I L+ KE Q+++ L       LT      
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLQYLMRHPGQLLTHTEIHQ 180

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           HL+   D +P   ++   I  LR+K+    G    + TV+G+GY   E
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIE-LPGAVPLVHTVYGKGYRFGE 227


>gi|270159060|ref|ZP_06187716.1| transcriptional regulatory protein OmpR [Legionella longbeachae
           D-4968]
 gi|289166104|ref|YP_003456242.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Legionella longbeachae NSW150]
 gi|269987399|gb|EEZ93654.1| transcriptional regulatory protein OmpR [Legionella longbeachae
           D-4968]
 gi|288859277|emb|CBJ13211.1| DNA-binding response regulator in two-component regulatory system
           with EnvZ [Legionella longbeachae NSW150]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 11/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+I+DD+ + H I   L    F    T  G +  +L +   FD IILD+ L  I G  
Sbjct: 7   HILIIDDDQEITHLINDYLIKNGFRTTWTLNGLNIKQLLRENNFDLIILDIMLPGIDGLN 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    S P+ +LS  +SI DKV GL+ GADDYISKPF+  EL+AR++A +RR++G
Sbjct: 67  LCQTIRQTH-SMPIIMLSAANSIADKVAGLELGADDYISKPFSSRELLARVKAQLRRTQG 125

Query: 122 HAQ---------SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         I   +  ++ +  + ++     I L+ +EY+++ +        L++
Sbjct: 126 ELDIDRKKLTPLQQIHFDNWILDRNTHSLIDKDSVAIPLSHREYELLLIFLEHPGRILSR 185

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  ++ LYD   + + + IDV I +LRKK+         + T+ G GY  +
Sbjct: 186 DQLMDLLYDKNFDSQDRTIDVLIGRLRKKIEIDPRNPRLLLTIRGGGYQFK 236


>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 236

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ +   I + L+++ + V+  + G+ G+E+ +       I+D+ +  + G  
Sbjct: 5   HVLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIMMPVMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +   LR      PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR   
Sbjct: 65  MTMKLRE-NFDFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRRYSR 123

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        ++  V G L +N D   V V G  + LT  E++++ LL        +
Sbjct: 124 YLKAVDSKEEKEPENYYVVGGLELNEDTVEVSVDGRAVKLTPIEFKILLLLIKNPGRVFS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     +++         I V + ++R+K+        Y++ VWG GY + +
Sbjct: 184 PDEIYERVWN-EKPITTDTIMVHVRRIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|229161461|ref|ZP_04289442.1| Sensor histidine kinase [Bacillus cereus R309803]
 gi|228621998|gb|EEK78843.1| Sensor histidine kinase [Bacillus cereus R309803]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 110/217 (50%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N+Y    G++ +++   YE D +ILD+ +    G EV + +R    + 
Sbjct: 16  ELLAVYLRNEGYNIYKAYDGDEALQMLCTYEVDLMILDIMMPKRNGLEVCQEVRENN-TV 74

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD-- 131
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS     +     D  
Sbjct: 75  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNNATQKKEDGI 134

Query: 132 -----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
                  ++    T++V    I LT  E+ ++ LL+       + E     +++      
Sbjct: 135 IRIRAAEIHKHNHTLKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 194

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 195 NKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
 gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL++ED+  +   +   L+   + V V   G +G+   + +  D ++LD+ +  + G
Sbjct: 1   MKTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E LR  R A    PV  L+   +  DKV GL+ GADDY++KPF+  EL+AR+RA +RR 
Sbjct: 61  LEFLRRFRAA-EHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRG 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     + +  G+L ++  ++T  VQG R+ LT  E++++           ++   L   
Sbjct: 120 NEAPPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLE-LLEQ 178

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    + IDV +  LR K+    G   +IETV+G GY L  +
Sbjct: 179 LQEEALGAERTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRLNPD 224


>gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum B str. Eklund 17B]
 gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 242

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 123/242 (50%), Gaps = 25/242 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++  +++  L  ENF V     GE  ++L + ++   ++LD+ L DI GFE
Sbjct: 5   RILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIMLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
           + +++        V +L+    + DK+ G++ GADDYI+KPF   E++ARI AI R    
Sbjct: 65  LCKSISQKFY---VIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFRTAGK 121

Query: 118 -----------------RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
                             +    +   V  ++S+N + +TV   G  I L  KE++++  
Sbjct: 122 NIWNNENNNMIMNVLECNTNDDNKGNTVEDEISINFNTRTVIKDGEEIILKRKEFELLSY 181

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L   K    T++  LN ++      + + +DV I +LR  L       + IETV+G GYV
Sbjct: 182 LYKNKGIVFTRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGED-KENSVIETVFGVGYV 240

Query: 221 LR 222
           +R
Sbjct: 241 IR 242


>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 221

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   I  +LK   + V V   G   +E+ +   FD I+LD+ L  I GF 
Sbjct: 4   RILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKIDGFV 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    S P+ +L+ +   ED+++G +   DDYI+KPF+   L+ R+ A++RR+ G
Sbjct: 64  VCEIIRKES-SVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S +   ++ +        V    I LT KE+Q++E+L        ++E  LN ++
Sbjct: 123 LEENNSTLTFEEIIIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + ++ID  I  LR+KL       +YI T+ G GY + +
Sbjct: 183 GYDYFGDTRVIDTHIKNLRQKL-----NIDYIRTIRGVGYKIEK 221


>gi|110803699|ref|YP_697777.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110684200|gb|ABG87570.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 119/231 (51%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +A +IE+ LK++ +NV+    G +G+E+ +  E    ++D+ +  + G  +
Sbjct: 6   VLVVEDEKEIAEAIEIYLKNQGYNVFKGSNGLEGLEIVEKEEIHLAVVDIMMPKMDGATM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  +   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR   +
Sbjct: 66  VMKIRE-RYDFPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELLARVNSQLRRYSKY 124

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      +    G L VN D K V + G  + +T  E+++++LL        + E 
Sbjct: 125 LSMVKKDEKKTNSYAIGGLEVNSDRKEVILDGDVVKVTPIEFKILQLLIKSPGRVFSAEE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +++         + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 185 IYERVWNEN-AVNTDTVMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEKQ 234


>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
           [Mycobacterium intracellulare ATCC 13950]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 4/222 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++++DD  +  S+E  L+   F V     G + +        DAI+LD+ +  + G  V+
Sbjct: 1   MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SR 120
            ALR      PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   + 
Sbjct: 61  TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I  G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++ 
Sbjct: 121 TSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++DVFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 181 YDFAADTNVVDVFIGYLRRKLE-AHGGPRLLHTVRGVGFVLR 221


>gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  + G 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      IET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VIETRRGQGYL 216


>gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++ +  ++   L+   + V  +  G +  +LC    +D ++LDL L  + G 
Sbjct: 1   MRLLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR ++  +  T V ILS  S + DK+ GL  GA DY++KPF+ +EL ARIR ++RRS 
Sbjct: 61  EVLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + ++ G L ++ +A+T    G  + LT +E+ ++E L +     ++ E  + H++D
Sbjct: 121 TQADAALMWGGLCLDTNARTASCNGIPLELTMREFAILEYLMMHMGRPVSAEELMEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P    + V+I  +R+KL         I  + G GY++
Sbjct: 181 SEADPFSNQVKVYISVIRRKLLAVTKD-EIIRNIRGAGYLI 220


>gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 226

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  ++  L    + V     GE+   L     +D I+LDLGL  I G 
Sbjct: 1   MRVLLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R    +TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G L ++  A    V G  + LT  EY+++  + + +   +++   + HLYD
Sbjct: 121 GIASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKK+ +       IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIGSD-----RIETVRGLGYRL 216


>gi|149908364|ref|ZP_01897027.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
 gi|149808527|gb|EDM68462.1| DNA-binding response regulator BaeS [Moritella sp. PE36]
          Length = 226

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ +LA  +   L    F  ++ D G + I+  K    D +ILDL L +  G ++
Sbjct: 8   ILVVEDEPSLAIVLCEYLAQAGFQTHIIDNGLEVIDWVKQKHPDLLILDLMLPNRDGLDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV + +      D++ GL+ GADDYI KP++  E+VARI+ ++RR+   
Sbjct: 68  YRELRTFS-QVPVVMATARVDEIDRLLGLELGADDYICKPYSPREVVARIKNVLRRTVEV 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A S    G L++N          + + LT  E++++   +        ++  +  +Y   
Sbjct: 127 AASSPQHG-LTINDKQMKATFDSNELTLTPAEFRLLSFFNHHPGQVFNRDQLMQEIYADH 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + ID  I  LRKKL + A    YI++++G GY  
Sbjct: 186 RLVTDRTIDSHIKNLRKKLQDVAPDNEYIKSIYGVGYRF 224


>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I+L+ED+  LA  +   L++  F V +   G++  +     +   +ILDL +  + G
Sbjct: 1   MKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+    +    ++   + +  Q   ++LT  E++++EL         ++   L+H+ 
Sbjct: 120 ERKAEPEDQS-LFRMDKAQQRIWYQQKPLNLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               E   ++ID  I  LR+K+S+AA       +++ V+G GY   
Sbjct: 179 PDSFEVADRVIDSHIKNLRRKISDAAETGNRHEWVQAVYGVGYRFE 224


>gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 113/232 (48%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +   IE+ LKS+N+NVY    G +G+E+ +  E    I+D+ +  + G  +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIESKEIHLAIVDIMMPRMDGVTM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR      PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TLKLREHH-DFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTKF 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +     + V G + +N D   V V G  + +T  E++++ LL        + + 
Sbjct: 125 NNRGQNKKENDRVHVIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSADE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++         I V +  +R K+        Y++ VWG GY + +  
Sbjct: 185 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEKQP 235


>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++ED+  +   I+L L+SE F V+  D  + G+        D ++LDLGL D  G + 
Sbjct: 8   IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR      PV +LS  ++  DKV  L +GADDY++KPF   EL+AR+RA +RR    
Sbjct: 68  IRDLRAWS-EIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRS 126

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A   +L   G + V+L  +TVE  G  +HLT  EY+++  L    +  LT    L +++ 
Sbjct: 127 AGGTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +   + V++  LRKK+ +      ++ T  G GY   
Sbjct: 187 PGHVEDSHYVRVYMGNLRKKIEDDPARPKHLRTEAGVGYRFV 228


>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
 gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +++ L+ E F   +   G    E      FD I+LD+ L  + G E+
Sbjct: 7   VLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R +R    + P+ +L+   ++ED+V GL  GADDYI+KPF   EL+AR+R  +RR   S
Sbjct: 67  CRRVRTVS-NVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +   +L + L    V+V G  + LT +EY ++E L   K T LT++  L  ++
Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  ++DV+I  LR KL +    K YI TV G GYV+R+
Sbjct: 186 GFDYTGETNVVDVYIRYLRAKL-DDRFHKKYIYTVRGVGYVVRD 228


>gi|229074992|ref|ZP_04207994.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
 gi|229097096|ref|ZP_04228062.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|229103157|ref|ZP_04233843.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|229116059|ref|ZP_04245452.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228667394|gb|EEL22843.1| Sensor histidine kinase [Bacillus cereus Rock1-3]
 gi|228680262|gb|EEL34453.1| Sensor histidine kinase [Bacillus cereus Rock3-28]
 gi|228686325|gb|EEL40237.1| Sensor histidine kinase [Bacillus cereus Rock3-29]
 gi|228708049|gb|EEL60220.1| Sensor histidine kinase [Bacillus cereus Rock4-18]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 8/217 (3%)

Query: 14  HSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIST 73
             + + L++E +N++    G++ I++   YE D +ILD+ +    G EV + +R    + 
Sbjct: 16  ELLAVYLRNEGYNIFKAYDGDEAIQMISAYEVDLMILDIMMPKRNGLEVCQEVRENN-TV 74

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGD-- 131
           P+ +LS  +   DK+ GL +GADDY+ KPFN  ELVAR++A++RRS     +     D  
Sbjct: 75  PILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSTFQNAATQKKDDGI 134

Query: 132 -----LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
                  ++    TV+V    I LT  E+ ++ LL+       + E     +++      
Sbjct: 135 IRIRTAEIHKHNHTVKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWNEDGYGS 194

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            K + V I  LR KL     G+ +I TVWG GY + +
Sbjct: 195 NKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231


>gi|104780165|ref|YP_606663.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95109152|emb|CAK13849.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED++  A  +   L  + F V +   G DG+ L    ++  I+LD+ L  + G+
Sbjct: 1   MRVLIIEDEEKTADYLHRGLSEQGFTVDLARDGIDGLHLALEGDYAVIVLDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRALR  K  TPV +L+    +ED++ GL+ GADDY+ KPF+  ELVAR++A+ RRS 
Sbjct: 61  GVLRALRARK-QTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    I   DL ++L A+     G R+ LT KE+ ++ +L+ R+   L+K      ++D
Sbjct: 120 IHEPLQIQVADLWIDLMARKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +++V I +LR KL +       + T+ G GYVL 
Sbjct: 180 INFDSDANVVEVAIKRLRAKL-DGPFDNKLLHTIRGMGYVLE 220


>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
 gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 224

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDG-IELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ L+  +   ++   + V     G    + L     FD +ILDLGL  + G
Sbjct: 1   MRILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F VLR+LR      PV IL+   +  D+V+GL  GADDY+ KPF+  EL AR+RA++RR 
Sbjct: 61  FSVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     +   G L+ +   +   + G  + LT +E  ++E L LR    ++KE  L  LY
Sbjct: 121 QCGVNPVYSCGTLTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +E     I+V+I +LRKK+  A      I T+ G GYV+ +
Sbjct: 181 SYAEEASNNAIEVYIHRLRKKIEPAG---VTIRTIRGLGYVIND 221


>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
 gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
           29799]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL +EDD +L   ++  L+S  + V      ++ + L +   +D ++LD+ L D  GF+
Sbjct: 3   KILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTLPDGTGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V + +R +  + P+  L+        V+GL  G DDYI+KPF   EL++RI+A++RRS  
Sbjct: 63  VCKEVR-SSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRRSLQ 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++    + V+ + + V   G  + L   EY+++ L     N  + +EM L+ ++
Sbjct: 122 FSKAETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMW 181

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG  +  +   + V+I +LR K+ +      Y+ T  G GY   
Sbjct: 182 DGNGNFVDDNTLSVYIRRLRNKIEDTPNAPKYLLTERGIGYKWV 225


>gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 220

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDDK +   I+  L    F+V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRVLLIEDDKLIGDGIKAGLIKMGFSVDWFTEGKQGLNALDSAPYDAVVLDLSLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G +S++    TV  +G  I+L  KE+ ++ELL   +   L + +    +Y+
Sbjct: 121 GQVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     I+V I  LRKK      G ++I TV G GY L E
Sbjct: 181 WDDDVSSNAIEVHIHHLRKKF-----GSSFIRTVHGIGYTLGE 218


>gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 126/225 (56%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   +E +L +  ++V     G +G    + Y++D ++LDL L  + G  +
Sbjct: 6   ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLEQYQYDLVLLDLMLPGVTGEAL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R +  + P+ I+S  +S+ D++  L+ GADD+I KPF+  E++AR+ A +RR+   
Sbjct: 66  VAQIRRSS-TVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAVAF 124

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +++     ++ +GDL ++ D+  V ++   + LT +E++++ LL        T+E     
Sbjct: 125 SEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFTQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     E   ++V I  +R KL+      +YI+TVWG G+ + 
Sbjct: 185 VWEDAFLGEDNTVNVHISNIRSKLAKIDPDTSYIKTVWGIGFKME 229


>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ L++E   V+    G D + L +  +   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDYI+KPFN  ELVARI++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K V V    I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGTLVLDKKRKIVTVDEKEIRLTPIEYRILELLIENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230


>gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 87/228 (38%), Positives = 137/228 (60%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD AL  +++  L   ++++ V   GE+G+     Y +DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R  + + P+ IL+   S +DKV GL +GADDY++KPF+ EELVAR++A++RRS 
Sbjct: 61  SLIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G  S+N  +  V      + L+G EY++ E+  L +    +K     H+YD
Sbjct: 121 GKASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +  +I+VFI +L KKL       N IET+ G+GY LR  + DE
Sbjct: 181 QDFDLDSNVIEVFIRRLCKKLDPD-NQYNLIETLRGQGYRLRVISPDE 227


>gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 241

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  L   I   L    F V+    G +  ++ +  +   ++LD  +    G  
Sbjct: 13  HILVVDDDFDLRELISGFLSQNGFEVHTAASGREMDKVLQRGDIGLVVLDYMMPGEDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + L   K   PV +LS      D++ GL+ GADDY++KPF+  EL+ARIRA++RR  G
Sbjct: 73  ICKRL-NQKGGPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q     L      +++   +T++   G ++ L+  E++++ +   R    LT++  L+
Sbjct: 132 RGQGEKSPLTTFFGWTLDNIKRTLQRPDGVQVALSNAEFELLRVFLERPGRALTRDQILD 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRE 223
           HL+    +   + IDV I +LR+KL++ A  G+  I T+ G GY+ R 
Sbjct: 192 HLHGPNSDNFDRAIDVQISRLRRKLNDEANDGEEIIRTIRGIGYMFRP 239


>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       + +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK +       LK+  + +      +D        + D  +LD+ L D  G E+
Sbjct: 4   IYVVEDDKNIREIESFALKNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVMLPDEDGLEI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR  +++   P+ +++  ++  DKV+GL  GADDY++KPF   EL++R++A++RRS+
Sbjct: 64  VRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLRRSQ 123

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I  G ++++ + + V   G    LT KEY+++ LL       +++++ LN ++
Sbjct: 124 IIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILNRVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E E + ID+ I  LRKKL  A      I+TV   GYV  EN
Sbjct: 184 GTDYEGESRTIDMHIKTLRKKLKEAGA---MIQTVRNVGYVFNEN 225


>gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   +STPV +L+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLQEWRAGGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V      I LT  E++++    L     L+K    +HLY
Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +I+V + +LR KL     G+N IET  G+GY  
Sbjct: 181 DGETERDSNVIEVHVNRLRGKL-----GRNVIETRRGQGYRF 217


>gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+   + G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 219

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+  ++   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEIQLGEQIVAGLEQNSWVAELSTDGIDALYRATSEPWDAIVLDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   +  P+ ILS  S +  +V GL +GADDY++KPF   ELVAR+RA +RRS 
Sbjct: 61  TVLKGIREENVDCPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   +I  G L ++  +  V   G  + LT  E++++  L   ++  +++   + H+Y 
Sbjct: 121 GNTSPVIQAGPLELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++R+K+         I+TV G GY +
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKVGTD-----VIKTVRGLGYRI 216


>gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 121/221 (54%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D++ +    +   K+          G + IE+ K  ++D ++LD+ + ++ GF 
Sbjct: 3   RFLIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIMMPNLDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R ++  K   P+ +LS      DK+ G + G DDY++KPF+ +EL+ARI+A+  R++G
Sbjct: 63  ACREIKKIK-DVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSERAKG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S+   G L V++  + + + G RI++T KE+ ++  L   K+  L++++ L+ +++ 
Sbjct: 122 MKHSVYSFGGLEVDITGRNLIIDGERINVTPKEFDLLVFLIQHKDQALSRDVLLDKVWNY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +D  I  LR+ L      ++YI TV G GY   
Sbjct: 182 NYYGDYRTVDTHIKMLRQNLGPY---RDYIVTVRGTGYKFE 219


>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
           Kuenenia stuttgartiensis]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 121/225 (53%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ + + I   L+ + +       GE  +EL K      IILD+ L  + G EV
Sbjct: 5   ILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLPGMNGLEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  +      + +L+     +D  RGL+ GADDY++KPF+ +ELVAR+ +++RR++
Sbjct: 65  CKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRRTK 124

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  + L+  GDL +N+D   V++    I LT  E++++  L+ +     T++  ++ +
Sbjct: 125 NASFKKELLEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLIDAI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    + IDV I  LRKKL      KN+I T+ G GY   E
Sbjct: 185 AGVETIIIDRTIDVHIASLRKKLK---SFKNHIITIRGIGYKFME 226


>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 232

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G  G E  +   +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSG 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +   DL ++ + +    QG  I L+ KE Q+++         +T    + 
Sbjct: 121 SQTYETTTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIME 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +L+   ++P   +I   I  LR+K+         I TV+G+GY  
Sbjct: 181 NLWQEEEQPSSNVIAALIRLLRRKIE-VGRETALIHTVYGKGYRF 224


>gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + V+V + G++ +   K    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     LV+RI AI+RR+
Sbjct: 67  ACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126

Query: 120 RGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +   + +  GDL ++ +A  V   G+++ L  KE++++ LL+ +     T+E+ L 
Sbjct: 127 SPSEELSDNKLEIGDLVIDREAYLVFQGGNKVVLAKKEFELLYLLASKPGKVYTREIILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++       + IDV I KLR+KL        Y+ TV G GY   
Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGET-----YVSTVKGVGYKFE 227


>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++DD+ +   +      E + V     G++G+++ K   F  I+LD+ +  + 
Sbjct: 1   MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+ +L  LR +  + PV +L+      DK++G  +G DDYI KPF+  EL  R+ AI++R
Sbjct: 61  GYTMLCKLRESS-NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 119

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           ++ +       I   D+ +N    TV+     I LT KEY+++  L++ K    + +M  
Sbjct: 120 TKSNNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L+          + + I  LR+KL ++     YI+T+WG GY + ++
Sbjct: 180 ELLWKDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 228


>gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 224

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +AH ++L L    F V     G  G+   +    D +ILDLGL D+ G E
Sbjct: 3   RILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +RV     P+ +L+   S+E KV  L  GADDYI KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIRV-GAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  +  G+L V+L  + V   G  + L+ KE++++ LL  R     ++     HL+  
Sbjct: 122 GEQ--VTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             E +  ++DV +  LR KL   +G   Y+ TV G GY LR+  K+
Sbjct: 180 SLERDSNVVDVHVANLRSKLRE-SGAYGYLRTVRGVGYALRQRDKE 224


>gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 236

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 127/231 (54%), Gaps = 9/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++DD  +   + L+L  E +NV     G  G+ L +    D I+LDL L DI G 
Sbjct: 7   IKILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNLPDINGQ 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R   +  P+ ILS   ++ DKV  L+ GADDY++KPF   EL+AR++AI+RRS 
Sbjct: 67  QICKIIRSE-LDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSE 125

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +  S        ++   ++++  ++ V ++  ++ LT KEY+++     +    L+++ 
Sbjct: 126 KNNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDD 185

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +N ++         + +DV I  LR+K+       + ++TV G GY +++
Sbjct: 186 IVNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKIKK 236


>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI+A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        N+++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRWVDT 223


>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
 gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
          Length = 234

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 126/225 (56%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++A+   ++  L+ E +NV +   G +G+E  + Y  D I+LDL L  + GF V
Sbjct: 15  ILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMNGFSV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
             A+R      P+ +L+ +     +++G  + ADDYI+KPF+   +V  I A++RR+   
Sbjct: 75  CEAIRKES-QVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQG 133

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++   DL+++ D+ TV V+   + LT +E+++++LL   +    T+E  L+ ++
Sbjct: 134 AGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSIW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + KI++  I  +RKKL        YIET+ G GY + + 
Sbjct: 194 GYDYFGDEKIVNTHIKNIRKKLGVD-----YIETIRGAGYKIEKE 233


>gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105]
 gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   +   L    +       G +         +D ++LDLGL    G 
Sbjct: 1   MRLLLVEDDPVLGAQLHKQLGKAGYAADWVQNGNEAEAQGCIEPYDLVVLDLGLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   +  PV +L+   + ++KV G  +GADDY+ KPF  EEL+ARI A+++R+ 
Sbjct: 61  DVLKGWRAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRAV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A   +    L ++   +TV+V       LTG E++++    L     L+K     H+Y
Sbjct: 121 GTAPESLKAKGLLLDETLQTVKVDNEEPQQLTGTEFRLLRYFMLHPGQPLSKTRLTEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   + +  +++V++ +LRKK+     G  +I+T  G+GYV  E A 
Sbjct: 181 EYDADKDSNVMEVYVNRLRKKI-----GAQWIQTRKGQGYVFGEPAP 222


>gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp.
           Fw109-5]
 gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 121/227 (53%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ L   ++  L++  F   +   GE  +   +    D ++LDL L D+ G EV
Sbjct: 4   VLLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLMLPDVSGTEV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            R ++    +   PV +L+      D+V G + GADDY++KPF+  ELV R++A+ RR+ 
Sbjct: 64  CRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRTG 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R   +     G + V++DA    V G  + LT  E++++ +L  R     ++E  L  
Sbjct: 124 AGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLED 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++   E E + +D  + +LR+KL     G++ +ETV G GY L + 
Sbjct: 184 VWEMSSEVETRTVDTHVKRLREKLG---SGRDLLETVRGIGYRLVDP 227


>gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica]
 gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+      ++G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+     GK+ I TV G GY+L    ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLVATEEN 222


>gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1]
          Length = 240

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEADA 236


>gi|291543513|emb|CBL16622.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
          Length = 227

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD ++   +   L +        +   D     +  + D ++LD+ L +  G  +
Sbjct: 2   IYLLEDDNSIRELVTYSLNNSGLETRGFEKPSDFWRGMEQEQPDLVLLDIMLPEEDGLSI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ LR    +   P+ +L+   S  DKV GL  GADDY+ KPF   EL+AR++A++RR+ 
Sbjct: 62  LKKLRSNPPTRKLPILMLTAKGSEYDKVIGLDCGADDYVPKPFGMMELIARVKALLRRTE 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   Q       L V      V V G  + LT KE++M+ +    +N  LT++  LN ++
Sbjct: 122 RKDPQPEHTIRGLYVCPAKHIVTVDGEPVSLTLKEFEMLCVFLENRNVVLTRDQLLNKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + E + +DV I  LR+KL   A   + IETV G GY L E 
Sbjct: 182 GYAFDGESRTVDVHIRSLRQKLGEYA---DVIETVRGIGYKLSEP 223


>gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/226 (40%), Positives = 133/226 (58%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IE +K LA  + L L+ E + V V   G +G+E     EFD I+LDL L ++ GFE
Sbjct: 4   KILIIEYEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L+  K +T + +++   SI D V GL  GADDYI KPF  EEL+ARIRAI RR   
Sbjct: 64  VTRRLQTEK-TTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S     S  +  DL +N   ++V      I LT +EY ++ +L    N  +T+E  L++
Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +  E  ++DV+I  LR K+ +  G ++YI+TV G GYV+RE
Sbjct: 183 VWKYDEAVETNVVDVYIRYLRGKI-DIPGKESYIQTVRGMGYVIRE 227


>gi|296449998|ref|ZP_06891762.1| response regulator [Clostridium difficile NAP08]
 gi|296878379|ref|ZP_06902387.1| response regulator [Clostridium difficile NAP07]
 gi|296261268|gb|EFH08099.1| response regulator [Clostridium difficile NAP08]
 gi|296430677|gb|EFH16516.1| response regulator [Clostridium difficile NAP07]
          Length = 266

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +A +IE+ L ++ +NV+    G +G+++ +  E    I+D+ +  + G  +
Sbjct: 32  ILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIIDIMMPKMDGITL 91

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR    + PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR   +
Sbjct: 92  TMKLRENH-NFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTKY 150

Query: 123 -------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                           +   G L +N + K V V G  I  T  E++++ LL        
Sbjct: 151 LNMVENKEQKVDDDDGVFAIGGLELNENTKEVSVDGKHIKATPIEFKILSLLMRNAGRVF 210

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++  +      + V +  +R+K+        Y++ VWG GY + +
Sbjct: 211 SADEIYERVWN-DNAVNTDTVMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 263


>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 237

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I  +L+ E +       G + +++        I++D+ +  + G   
Sbjct: 6   ILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNVVHLIMIDIMMPKMNGLAA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    + P+ ILS  +   DKV GL  GADDYISKPFN +E++AR++A +RR    
Sbjct: 66  VMKIRETN-NIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMRL 124

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  I  GDL ++  AK + V G  +HLT  EY+++ELL          E   
Sbjct: 125 GAMNSESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++          + V I ++R+K+        Y++ VWG GY + ++
Sbjct: 185 ERVWQEPAYSVENTVMVHIRRIREKIEINPKQPKYLKVVWGIGYKIEKD 233


>gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7822]
 gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MRILL+ED+  L  +++  L  + + V     G +     +    E++  I+D  L  I 
Sbjct: 1   MRILLVEDEPDLGEALKKALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLPGIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++ LR  K S PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GLDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRALGRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S          G L ++   +TV  + H+ + LT KE+Q++E      N  LT E   NH
Sbjct: 121 SPQLQPQQFQRGLLILDYGTRTVYYKNHQTLPLTTKEFQLLEYFFNHPNQILTSEQIRNH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L++  +EP   ++   +  LR+KL    G KN IETV G GY  
Sbjct: 181 LWEMGEEPLSNVVAAQVRLLRRKLETV-GSKNSIETVHGVGYRF 223


>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
           epidermidis VCU045]
          Length = 219

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/208 (33%), Positives = 117/208 (56%), Gaps = 8/208 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++D+K +A  +E  LK E ++VY    G D ++L    E D ++LD+ L    G E
Sbjct: 4   KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   P+ +L+   S  DKV GL+ GADDY++KPF+  EL+AR++A +RR   
Sbjct: 64  VCREVR-KKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A + I   D+ +  DA +++ +G  I LT +E+++   LS      +T+E  
Sbjct: 123 QPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLS 202
           L  ++      +V+ +DV I +LR+KL 
Sbjct: 183 LQTVWGYDYFGDVRTVDVTIRRLREKLK 210


>gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 237

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC------KFYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ ++        +   +  I+LDLGL
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFTVTHARNGEEALQAVLPTAQGERPSYGVILLDLGL 60

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            D  G++V   +R    +TPV +++    +  ++ GL  GADDY+ KP++  EL+ARI A
Sbjct: 61  PDQDGYQVCGRIRKL-TTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIHA 119

Query: 115 IVRRSRGHAQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
           + RR  G  ++           +  G +++ L  + V V G  + LT KE+ ++ LL+ R
Sbjct: 120 VSRRHAGTEETAATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQR 179

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 +E  ++ ++    E   + ++V +  LR KL         IETV G GY L   
Sbjct: 180 PGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRM----PALIETVRGVGYRLVAP 235

Query: 225 A 225
           A
Sbjct: 236 A 236


>gi|309779354|ref|ZP_07674116.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
 gi|308921912|gb|EFP67547.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
          Length = 244

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/244 (31%), Positives = 126/244 (51%), Gaps = 15/244 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK----------FYEFDAIIL 50
           MR+LL+EDD  +  S+   L+ + F +     GE  +                 FD ++L
Sbjct: 1   MRVLLVEDDDMIGDSVRKGLRHDGFAIDWVRDGEAAVHAVTAPGAASAESGSTLFDLMLL 60

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G +V+R +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL A
Sbjct: 61  DLGLPKRDGLDVVREVRQRGIAIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A++RR  G A  L+  G++ +N   + V   G  + L+G+E+ ++  L  R     +
Sbjct: 121 RMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGVPVKLSGREFAVLHALLARPGKVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A     
Sbjct: 181 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREASTSPA 235

Query: 231 EYLE 234
           E  +
Sbjct: 236 EPAD 239


>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
           ES-1]
 gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
           [Sideroxydans lithotrophicus ES-1]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+ A+   +   +    F           +        D I+LD  L    G E+
Sbjct: 6   ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +L+      DK+ GL+SGADDYI+KPF+  EL+ARIRA++RR  
Sbjct: 66  ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRRRA 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +    + ++     V   G  + L   E++++           ++   L+ ++
Sbjct: 126 PQMSDETVRVEGVELSPTTHRVSANGQNVDLGPTEFRLLHFFMTHVERVYSRAQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 E + +DV I +LR+ L   +G    ++TV G GY   + 
Sbjct: 186 GDHVFVEERTVDVHIRRLRQALEP-SGLDGLVQTVRGSGYRFSKE 229


>gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM
           12804]
 gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L++EDD   A  I   LK   ++  +T  G   ++      +DAIILD  L  D+ G 
Sbjct: 3   RCLIVEDDADNARYIANGLKELGYDPVITMDGPTALQRATTEHWDAIILDRMLPNDVDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR     TPV +LS +++++++VRGL++G DDY++KPF   EL AR+ A++RRS 
Sbjct: 63  SILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSS 122

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+ +  +   DLS++L +  V   G  I L  +EY+++  +       LT+ M L  ++
Sbjct: 123 SGYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P+  +IDV I +LR+K+ +  G    I TV G GY L   A
Sbjct: 183 GYHYDPQTNVIDVHISRLRQKI-DGPGEAPLIHTVRGVGYRLSAQA 227


>gi|77411963|ref|ZP_00788293.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|77161989|gb|EAO72970.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           CJB111]
 gi|319745956|gb|EFV98239.1| phosphate regulon response regulator [Streptococcus agalactiae ATCC
           13813]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+   F        E   E  +    D I+LD+ L    G  +
Sbjct: 2   IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV + +   S  DKV+GL  GADDY+ KPF   E+++RI+A++RRSR
Sbjct: 62  LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I+ G+L ++     V+    +IHLT KE++++ L     N   T++  L+ ++
Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   E + +DV I  LR KL         I TV G GY L E
Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY---LIATVRGVGYRLEE 222


>gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   ++  + SEN        G  G+   K  E+  ++LD+ +  I GFE
Sbjct: 4   KILIIDDDKELCLLLQKSVSSENIEADCCHFGTAGLSALKNSEYQLVVLDVMMPGIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L  +R  K S P+ +L+  +    KVRGL++GADDY++KPFN +E +AR+ +++RR   
Sbjct: 64  TLERIR-KKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTR 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G   S +    L ++LD++T+ +    + L  KE+ ++   +  +   LTK+    
Sbjct: 123 FNPNGVQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I ++RKK+        +I+TV G GY   +  
Sbjct: 183 EVWGEPYAYDDSNIMALISRIRKKIEKTPSKPTFIQTVKGIGYRFNKEV 231


>gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +   L+ E++ V     GE    +    E+D +ILDL L  + GF
Sbjct: 1   MRILVVEDDAPLAKFVAKGLEEEHYAVDTVHDGEQAKSMACEVEYDLVILDLNLPKLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      P+ +L+G + +ED+VR L  GADD + KPF+  EL AR+RA++RR  
Sbjct: 61  GVLQQVR-DHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARVRALLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             AQ  +   DL ++   +TV   G RI LT KE+ ++E L       +T+ M + H+++
Sbjct: 120 SAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRTMIIEHVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            + +    ++DV++  LR+K+ ++      I TV G GY +R    + +
Sbjct: 180 LKFDTGTNVVDVYVNYLRRKV-DSEFPTKLIGTVRGVGYEIRPEGVEAS 227


>gi|65317712|ref|ZP_00390671.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 209

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 8/203 (3%)

Query: 27  VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIED 86
           V     GE  ++L     +  +ILDL +    G EV R LR  K + P+ +L+      D
Sbjct: 2   VDTAIDGEVALQLFNQNNYSIVILDLMMPKXDGIEVCRKLR-DKTNVPILMLTAKDHEVD 60

Query: 87  KVRGLQSGADDYISKPFNKEELVARIRAIVRRS-------RGHAQSLIVTGDLSVNLDAK 139
           K+ GL  GADDYI+KPF+  E+VAR++A++RR            ++ +    L++NL+  
Sbjct: 61  KILGLSIGADDYITKPFSIHEVVARVKALIRRFLVLGSNINVQEKTTLAFKGLTINLNTY 120

Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199
           TV      I LTGKE ++++  +       TK     +++D     +   + V I KLRK
Sbjct: 121 TVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQLFRNVWDDNYIEDDNTVMVHIRKLRK 180

Query: 200 KLSNAAGGKNYIETVWGRGYVLR 222
           K+        +I+TVWG GY   
Sbjct: 181 KIEIDPSNPKFIQTVWGIGYKFV 203


>gi|229588249|ref|YP_002870368.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229360115|emb|CAY46969.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 224

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  ++  L    + V     G DG+ L + + ++ +ILD+ L +  G+
Sbjct: 1   MRILVVEDEQKTADYLQQGLTESGYVVDCAASGIDGLHLARQHRYELVILDVNLPNTDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR       V +L+    + DK++GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLEQLRRDGNQ-RVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSE 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ +L  +    +T+   ++ ++
Sbjct: 120 HIPVPDVLRVSDLELDPRRHRAYRGDRRIDLTTKEFALLHVLMRQAGEVMTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSISRLRGKV-DDQSEVKLIHTIRGVGYVLE 221


>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ LK+E   V+    G D + L + ++   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K + V G  I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGALILDKKTKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+   +    Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230


>gi|119486828|ref|ZP_01620803.1| two-component response regulator [Lyngbya sp. PCC 8106]
 gi|119456121|gb|EAW37254.1| two-component response regulator [Lyngbya sp. PCC 8106]
          Length = 824

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 1/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L+IE+D A AH I+  L  + + V V   GE G    + + +D ++++  L  + G 
Sbjct: 1   MRFLVIENDAAQAHQIKKALIEQGYIVDVVIDGEQGWAYVEAFTYDLLLVNAHLPKLNGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    S P+ +L+  +S  D V  L++G DD++ KPF+  EL ARIRA++R  R
Sbjct: 61  DLCQRIREQGYSVPILLLTVQNSSIDHVACLEAGIDDHLIKPFSPRELFARIRALLRSPR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+    L ++  ++ V  Q H + L+ KEY ++EL        LT+   L HL+ 
Sbjct: 121 QANAPLLKWNSLHLDPISREVTYQQHPLSLSPKEYSLLELFLRNPKRVLTQTAILEHLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
              +P    +   I +LR+KL      K  IETV+G GY L+  ++ ++   L 
Sbjct: 181 FESQPNEHTVRAHIKRLRRKLKTVNADK-IIETVYGVGYRLKPLSQSQSQAPLP 233



 Score = 98.4 bits (245), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL ++DD    + +  +L S    V   D      E  +    + +ILDL +    G E
Sbjct: 529 QILAVDDDPVTLNRLLELLPSYGLEVTPLDDPRLFWETLEKTAPELLILDLEMPFFNGVE 588

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + + +R  +   + P+  LS     +      Q+GADDYISKPF + EL+ RI   + R
Sbjct: 589 LCQTVRTDRSWNALPILFLSARKEPQTIQDIYQAGADDYISKPFAEAELITRIFNRLDR 647



 Score = 72.6 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 2/139 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP--G 59
           R+L+I+DD  L   ++    + N  + V    E    + +    D ++LDL   D    G
Sbjct: 404 RVLVIDDDLELTEQLQRAAINWNIQLDVITQLEKARLILQETPPDLVLLDLVFPDHQDGG 463

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F +L  L+      PV + +    + D+    + G + ++SK  + ++++  I+ I++ +
Sbjct: 464 FVLLEELQHKFSELPVLVWTVRDDMSDRATVARLGGNAFLSKSASCDQVLTTIKDILQST 523

Query: 120 RGHAQSLIVTGDLSVNLDA 138
              +  ++   D  V L+ 
Sbjct: 524 PTASTQILAVDDDPVTLNR 542


>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 248

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 115/228 (50%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD A+   +E+ L  + + +     G + +++ +  E+  +++D+ +  I GF 
Sbjct: 20  KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ I++     +D V G + GADDYI+KPF   EL AR+ AI+RR  G
Sbjct: 80  VTERIRARS-DVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A  ++  GDL ++     V + G  ++LT  E++++  L+        +E+    
Sbjct: 139 YQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFRE 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++      +  ++DV + +LR+K+         I TV G GY L +  
Sbjct: 199 VWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLADGG 246


>gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099]
 gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099]
 gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family
           [Mesorhizobium opportunistum WSM2075]
 gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 123/226 (54%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED++ L   +   L+SE + V V   G++     +    D ++LD  +  + G E
Sbjct: 5   RIMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      D+VRGL +GADDY+ KPF+  E +AR++A++RR+
Sbjct: 65  LCRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRRA 124

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S++  GD+ ++ ++  V  +   I L   E++++E +        ++   L+++
Sbjct: 125 KPEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLLDNV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRK + N     + I T+ G GY +RE+
Sbjct: 185 WGETIYIDERTVDVHVGRLRKAV-NNGRMPDVIRTIRGAGYAIRED 229


>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +A +I   L+   ++  V   G  G  L    +++ IILD+ L DI G+E
Sbjct: 3   RILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPDISGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R    + P+ +L+ M  IEDK+ GL+ GADDYI KPF+  EL AR+    RRS  
Sbjct: 63  ICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSDL 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++   DL++N+ +K V      I LT KE+ ++E L   +   ++K      
Sbjct: 123 LISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++   +P   +++V+I  LRKK+      K  I T  G GY L+ +
Sbjct: 183 VWNFNFDPGTNVVEVYINYLRKKIDKEFDVK-LIHTRPGLGYTLKAD 228


>gi|229587824|ref|YP_002869943.1| osmolarity response regulator [Pseudomonas fluorescens SBW25]
 gi|229359690|emb|CAY46538.1| DNA-binding response regulator [Pseudomonas fluorescens SBW25]
          Length = 246

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAL 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELKRGDEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
 gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 115/222 (51%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  + + +  +L++E+F       G +   L      D I+LDL L  + G E
Sbjct: 4   QILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKLLFMHNTPDLILLDLMLPGLSGEE 63

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +L  LR       PV ILS   ++ DKV  L+ GADDYI+KPF  EE++ARI+A +RR+ 
Sbjct: 64  LLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRTA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   +L +  D++ V V G  + LT  EY ++ L         ++EM  + ++ 
Sbjct: 124 --TSKKLSCLNLELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVWH 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G    E   ++V +  LRKK+  A     YI TV+G G+ L 
Sbjct: 182 GGYYGENNTVNVHVSNLRKKIKEADPENEYIRTVYGIGFKLV 223


>gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           2457T]
 gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str.
           301]
 gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073]
 gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82]
 gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str.
           2457T]
 gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1]
 gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671]
 gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6]
 gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218]
 gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272]
 gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|94314591|ref|YP_587800.1| DNA-binding response regulator [Cupriavidus metallidurans CH34]
 gi|93358443|gb|ABF12531.1| DNA-binding response regulator in two-component regulatory system
           with CopS [Cupriavidus metallidurans CH34]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  +     +D +ILD+ L DI G+
Sbjct: 1   MKLLVVEDETKTGEYLRQGLTEAGFIVDLVHSGLDGQHMALNESYDLLILDVMLPDIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R A    PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RILQNIRAAGNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    I   DL ++L  +     G RI LTGKE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 AQAPVDRIQIADLVLDLARRRATRAGRRIVLTGKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL   
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDDK-LIQTVRGMGYVLEAP 224


>gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986]
 gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986]
          Length = 235

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 11/232 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++D+K +A  +E+ L S+ + V+  +  EDG+ + +  +    ILD+ +  + G 
Sbjct: 4   INILVVDDEKEIADLVEIYLVSDGYTVFKANNAEDGLAIIEKEDIHLAILDIMMPGMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + +R    + P+ +LS  S+  DK+ GL +GADDY++KPFN  EL AR+++ +RR  
Sbjct: 64  EMCKKIRE-SYNFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYT 122

Query: 120 ---------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         + I    + +N D   V +    I LT  E+ ++ LL+       +
Sbjct: 123 QLNPNNIVVEKEDPNEIRLKGMIINKDNHKVIIDDKEIKLTPIEFDILYLLASNAGKVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +     +++ +       + V I +LR K++  A     I TVWG GY + 
Sbjct: 183 TDEIFERVWNEKVYEANNTVMVHIRRLRGKMNEDARVNKIITTVWGVGYKIE 234


>gi|312140675|ref|YP_004008011.1| two component system response regulator mtra [Rhodococcus equi
           103S]
 gi|325675695|ref|ZP_08155379.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890014|emb|CBH49332.1| two component system response regulator MtrA [Rhodococcus equi
           103S]
 gi|325553666|gb|EGD23344.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F  YV   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMLTIVLRGEGFEPYVVGDGSQALTAVRETRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRAESG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GD+ +++ A  V      I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEVLSIGDIMIDVPAHKVTRDNALISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKVEKDPENPEVVLTVRGVGYK 221


>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
 gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Cylindrospermopsis raciborskii CS-505]
          Length = 268

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V +T  G+ G EL +   +D +ILD  L +  G 
Sbjct: 33  MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    + PV  L+   +++D+V+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 93  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +  GDL ++++ +    QG  I L+ KE Q+++         LT    + H
Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ G   PE  +I   I  LR+K+    G    I TV+G+GY  
Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIE-LGGESMLIHTVYGKGYRF 255


>gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
 gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758]
          Length = 226

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED+  +   +   L++  F     + G    E       + I+LD+ L    G E+
Sbjct: 2   IFCVEDEANIRELVVYTLETTGFEARGFEEGTSFFEALAEELPELILLDIMLPGEDGMEI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +      PV +++   +  DKV GL +GADDY++KPF   ELV+RIRA++RR+ 
Sbjct: 62  LKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLRRTS 121

Query: 121 GHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +      G++ ++     V V G  + LT KEY+++  L   +N  LT++  L  ++
Sbjct: 122 KKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLEEIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + E + +DV +  LR+KL  A     YIETV G GY + E
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGQAG---EYIETVRGVGYRIGE 222


>gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
 gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea
           phototrophica DFL-43]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L   I   L+     V     G+D +      ++D +ILD  +  + G 
Sbjct: 1   MRILLLEDDRDLGPWITKGLREAGHVVDHFPDGKDALIAAMGQDYDLLILDRMVPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR +K +TP   L+ +  ++ +V G ++G DDY++KPF   EL AR+ A+ RR  
Sbjct: 61  AVLKSLRASKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRRE 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      S++    L ++L A++ E QG  I L  KE++++E    R    +T+ M L  
Sbjct: 121 GTQDSEPSVLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  I +LR K+ +    +  I T  G GYV 
Sbjct: 181 VWDMSFDPTTSVVETHISRLRAKV-DKPFDEELIRTRRGEGYVF 223


>gi|319943631|ref|ZP_08017912.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742864|gb|EFV95270.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 237

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 110/230 (47%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  L   +   L  + F V +         L +   FD IILD  L    G  
Sbjct: 7   KLVVVDDDAKLRDLLNRYLTEQQFEVTLAADSASLNRLMQRESFDLIILDQMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R LR A   TP+ +L+      D++ GL+ GADDY+ KPFN  ELVAR+ A++RR   
Sbjct: 67  IIRRLRAANDRTPIIMLTAKGDDVDRIIGLEMGADDYMQKPFNPRELVARVHAVLRRQIP 126

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +            +  G    +L  +T+   G R++LT  E+ ++++L       L++E 
Sbjct: 127 NDTPGGAMHDIGAVSFGPFVFDLGTRTLSRDGVRLNLTTGEFSVLKVLVRHPRIPLSREK 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +            + +DV I +LRK +        +I+TVWG GYV   
Sbjct: 187 LMLLARGREYGAFDRSLDVQISRLRKLIEPDPQNPRFIQTVWGVGYVFVP 236


>gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ATCC 35469]
 gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia fergusonii ATCC 35469]
 gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 7   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 67  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L + +  + V +    + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 127 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK  I TV G GY+L  + +
Sbjct: 187 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYMLVTSEE 227


>gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 219

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+  ++   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGQQIIDTLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H+Y 
Sbjct: 121 GSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTVEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
 gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
          Length = 238

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   + + L+ E + V     G DG+E  K+ ++  ++LD+ L  + G  
Sbjct: 4   RILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLNGKS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR  K +TPV I+S  +  + +V G + GADDY+ KPF+  EL+ RI AI++R++ 
Sbjct: 64  ILSELRKTK-ATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L +++++  V V+   + LT KE+ ++  L+   +    +  
Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDSEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  ++D     +++ +D  I ++RKK    +      I TVWG GY  
Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPKVAQMIVTVWGIGYKF 231


>gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 113/226 (50%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +A  +E  L  E + V +      G E  +  + D  + DL L D  G+
Sbjct: 1   MNILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSLPDGSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R  K   P+  L+      + V GL  GADDYI+KPF  +EL++RI++++RR  
Sbjct: 61  ELCKMARA-KSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCN 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++   GD+ +N     V  +   I LT  EY+++ + +      L++   L  +
Sbjct: 120 KENNLKNIFEIGDICINTLDAKVYKKNIEISLTALEYRLLLVFANNIGQVLSRSQLLEGI 179

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   D      + V+I ++R+KL +       I+TV G GY + +
Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLEDDPQNPRIIKTVRGMGYRIGD 225


>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L++ED+  +   I   L  + FN++    GE+G+      + D IILD+ +  + 
Sbjct: 1   MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+L  LR    + PV  L+     EDK+ G + GADDY++KPF+ + LVA+++A+++R
Sbjct: 61  GLEMLEKLREVS-NVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119

Query: 119 SRGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +R    S I     LSVN  +  V+V  + I L+ KEY+++  L   ++  L+++  L++
Sbjct: 120 TREDLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDN 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +++ +D  I +LR+KL + +    YI TV G GY   
Sbjct: 180 VWGIDYYGDIRTVDTNIKRLREKLLDKSS---YIVTVRGSGYKFE 221


>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
 gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
           [Victivallis vadensis ATCC BAA-548]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL++ED++A+   I   L  + ++ V   + GE+ +     +  D I+LDL L  + G 
Sbjct: 5   KILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLMLPGMDGL 64

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
            V R L+    +   P+ +L+  S   D V GL+ GADDY+ KPF+ + L+ARI++++RR
Sbjct: 65  AVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLRR 124

Query: 119 SRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +      A   I  G L +N   +   + G  + LT  E++ + LL+ R     T+   
Sbjct: 125 VKPSDAEAAAGTIKRGPLCMNRGTREALLDGRPMTLTFSEFETLYLLARRPGWVYTRGQI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +N +         + IDV +  +R+KL       + IETV G GY   ++
Sbjct: 185 VNEVKGDDYPVTERAIDVQMVSIRRKLGTHG---DLIETVRGVGYRFVQD 231


>gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
 gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii
           ECD227]
 gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v]
          Length = 240

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEADA 236


>gi|242237847|ref|YP_002986028.1| DNA-binding transcriptional regulator BasR [Dickeya dadantii
           Ech703]
 gi|242129904|gb|ACS84206.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  I+LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQEGLLQAMRNEGYTCDCATTAKEADALINSAHYSLIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R  + S PV IL+   +++++V GL  GADDY+ KPF   EL+ARIRA++RR +
Sbjct: 61  TLLTRWRNNQHSQPVLILTARDTVDERVTGLNIGADDYMIKPFALSELLARIRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +++LI   +++++L+++ V +    + LT KE+ ++  L L+  + + +E+    +Y+
Sbjct: 121 GSSENLIQVDNITLDLNSQQVMLDSKPVILTPKEFAILSRLILKAGSQVHREVLHQDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219


>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
           [Burkholderia sp. 383]
 gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. 383]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 136/225 (60%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +A  +   L   ++ V V + G+DG+ L    +FD ++LD+ L ++ GF
Sbjct: 1   MRILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K  TPV +L+   +IEDKV GL+ GADDY+ KPF   E +ARIR+++RR+ 
Sbjct: 61  EVLKRLRAQK-QTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + + ++   DL V+L  + V     RI LT +E+ +++LL+ R+   LT+    + ++D
Sbjct: 120 RNVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++D  I +LR K+ +    K  I T+ G GYVL + +
Sbjct: 180 MNFDSDTNVVDAAIKRLRAKI-DNTYEKKLIHTIRGMGYVLEDRS 223


>gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 240

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|294055543|ref|YP_003549201.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614876|gb|ADE55031.1| two component transcriptional regulator, winged helix family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 222

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 84/220 (38%), Positives = 133/220 (60%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  L  ++   L+ E F       GE+G+     +++DAI+LD+ L  I G+
Sbjct: 1   MRVLVIEDEAELRETVVETLREEGFATDYCGDGEEGLYKALHWDYDAILLDIMLPKINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R A+  TPV +L+    I+D+++GL  GADDY+ KPF+  E++AR RAI RRS 
Sbjct: 61  EVLKRIRDAQKETPVMMLTARDGIDDRIKGLNQGADDYLPKPFDLAEMIARTRAIARRSG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G++ VN  ++ V + G  I LT +EY + EL   + +  +T++    HL+D
Sbjct: 121 GQRNPELRIGNVIVNTTSRQVTLNGQPIELTAREYALTELFVRKVDEVVTRDYIYEHLFD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             ++    I+DV+I KLR+KL     GK +I T+ G GY+
Sbjct: 181 ENEDSLSNILDVYIYKLRQKL-----GKQFIRTMRGHGYI 215


>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
 gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS
Sbjct: 61  FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 224


>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 228

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +IEDD+ +   +    K E F V     G+   E  K  + DA++LDL + +I G E 
Sbjct: 4   IYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDGLEF 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R  K    TP+ +L+  S+  DK+ GL+ GADDY++KPF+  EL+AR++A++RRS+
Sbjct: 64  CKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIRRSK 123

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 ++      DL +  +   V ++G  I+LT  +++++  L   +   L+++  L 
Sbjct: 124 SYHFPTSKPKYKFKDLEIIPEKFEVTIKGQHINLTITQFKLLLALVNAEGRVLSRDYILE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++    +   + IDV I KLR+ L +     N I+TV G GY   
Sbjct: 184 NIWKWDKDIYDRTIDVHIKKLREVLGDYG---NCIKTVRGVGYKWE 226


>gi|77409125|ref|ZP_00785839.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
 gi|77172253|gb|EAO75408.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           COH1]
          Length = 225

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+   F        E   E  +    D I+LD+ L    G  +
Sbjct: 2   IYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAVQEKVPDLILLDIMLPGDDGLTI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV + +   S  DKV+GL  GADDY+ KPF   E+++RI+A++RRSR
Sbjct: 62  LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I+ G+L ++     V+    +IHLT KE++++ L     N   T++  L+ ++
Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   E + +DV I  LR KL         I TV G GY L E
Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY---LIATVRGVGYRLEE 222


>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
 gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
           [Desulfuromonas acetoxidans DSM 684]
          Length = 231

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 113/230 (49%), Gaps = 12/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +   +   L  + F V     GEDG+E  +    D +ILDL L  + G EV
Sbjct: 5   ILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMDGLEV 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              L+  +     P+ +L+      D V+GL+ GA DY++KPF+ + L+AR++A++RR  
Sbjct: 65  CETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLRRYE 124

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              ++        I    L ++     V V G  + LT  E++++  L+ R     T+  
Sbjct: 125 QGDETEHVPTDAVIERHGLVIHPGRNEVLVDGRSVDLTYTEFRVLHFLASRPGWVFTRYQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +N +         + +DV I  LR+KL N       IETV G GY  ++
Sbjct: 185 IVNAVRGEDYSVTDRAVDVQIVGLRRKLGNFGHC---IETVRGVGYRFKD 231


>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 230

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +       ++   +       G + ++  +    D I+LD+GL ++ G E
Sbjct: 4   RILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+  L+      D++ GL+ GADDY++KPF+  ELVARI+AI++RS  
Sbjct: 64  VCREIRKSS-DVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKRSTP 122

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++++  G L +N +    +  G  + LTG E++++  L  R +  +++   ++ L
Sbjct: 123 TPAPPEAVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVISRTQLVDTL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y        + ID  I  +R KL+ A G    I TV G G  +
Sbjct: 183 YGYNIHVSDRTIDSHIRNIRAKLAQA-GCAEGIVTVHGVGLRM 224


>gi|116493100|ref|YP_804835.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116103250|gb|ABJ68393.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 240

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 15/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           MRIL+IED+K+++  + +  K E +NV     G   IE  K    ++D ++LDL L    
Sbjct: 1   MRILMIEDNKSVSDMMGMFFKKERWNVTFVYDGLKAIETFKTDPEQWDIVLLDLNLPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV   LR    S P+ +L+   S  D+V GL+ GAD+YI+KPF+   L+ARI+A+ RR
Sbjct: 61  GMEVAAELRRTSQSIPLIMLTARDSESDQVLGLEMGADEYITKPFSPITLIARIKALYRR 120

Query: 119 SRGHAQSL----------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNT 167
                +++          + T  L ++   + V +    I  LT KE+ +++ L+ +   
Sbjct: 121 VSMSRETMTQGAQNAKFDVRTAHLKISTSTREVYLDEKLISDLTPKEFDLLKTLAQKPMQ 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++E  L  ++D     + + +D  I KLR+KL     G   ++TVWG GY   ++  D
Sbjct: 181 VFSREQLLQIVWDYEYYGDERTVDAHIKKLRQKLEAV--GPQVVQTVWGVGYKFDDSKID 238

Query: 228 E 228
           E
Sbjct: 239 E 239


>gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89]
 gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88]
 gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli S88]
 gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407]
 gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489]
          Length = 223

 Score =  256 bits (655), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLISTIRGMGYSFV 219


>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 240

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 117/237 (49%), Gaps = 11/237 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  +   + + L  E ++V     GE+G+ + + +  D ++LDL L D+ G  
Sbjct: 3   KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  ++R      P+ ILS  S + ++V+ L++GADDY+ KPF+  E+ AR+ A++RRS+ 
Sbjct: 63  VCASIRERS-HVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQF 121

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                               + ++ + + + V+G  I  T  E++M++L         ++
Sbjct: 122 SATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSR 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           E  +N +         + IDV I  LRKK+         I TVWG GY    +   E
Sbjct: 182 EELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTDHSQE 238


>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
 gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 226

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K LA+ I+  L    + V V   GE+ +      E+D IILDL L  I G 
Sbjct: 1   MKLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R       + ILS  + IED+V GL  GA+DY+ KPF+  EL ARIR+++RR  
Sbjct: 61  EVLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G + ++     V + G  + +T KEY ++  L   KNT ++ E  + H++D
Sbjct: 121 IQENSMLSCGSIFIDTSKNLVYINGDLLSVTKKEYAILNYLLYNKNTVVSSEKLIEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     +   +  LRKK++     K  I+TV G GY++ E   D
Sbjct: 181 SEVDLFSNTLKYHMHSLRKKIAEY-SEKEIIKTVRGCGYIVEEQDND 226


>gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
 gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 17  MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R +    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 77  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 136

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 137 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +       I T  G GY+L E 
Sbjct: 197 DMNFDSDTNVIEVAIRRLRAKI-DDGFEPKLIHTARGMGYMLDEP 240


>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
 gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 228

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ +EL LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREIK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065]
          Length = 230

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   +++ L  E + V ++  GE+ ++  +  +F+ I++D+ +  + GFE
Sbjct: 4   KMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            ++ +R    + P+  L+   S +DK++G  SG DDYI+KPF+  EL  R+ AI++R   
Sbjct: 64  AIKRIRRL-TNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL +NL   T+  + + I LT KE+ ++ LL+  K            
Sbjct: 123 SVIEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++          +   I  LR+KLS+      YI+TVWG GY + + A
Sbjct: 183 VWGQEFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEKEA 230


>gi|257464207|ref|ZP_05628587.1| DNA-binding response regulator [Fusobacterium sp. D12]
          Length = 226

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  + + I    K E + V     G + ++  K   FD +ILD  L  + G 
Sbjct: 1   MKVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGS 60

Query: 61  EVLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           ++ + +R       S  V +++  +  ED + G   GAD+Y+ KPF+  EL+AR + +++
Sbjct: 61  QLTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQ 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               H+++      L ++     V  +G  + L+ KEY ++  L + +   +T+E  L+ 
Sbjct: 121 NKIPHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++        + +DV+I KLR+KL    G    I+TV G GY L E
Sbjct: 181 VWGSTYYIGDRTVDVYISKLREKL---PGISTSIKTVKGVGYKLEE 223


>gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1]
 gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 228

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           M+I++++DDK +   + + LK+E +       G++ + ++    +   +ILD+ +  + G
Sbjct: 1   MKIIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATTPDIGLMILDIMMPQMTG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +V++ LR      P+ ++S  +   DK++GL +GADDY+ KPFN  E++AR+R+++RRS
Sbjct: 61  IDVIKELRKDS-DIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRS 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +         ++  G L +N D+  V  + G+ I LT  E+ ++ LL+   N   + +  
Sbjct: 120 QKKVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++        K + V +  LR K+  A  G+  I+TVWG GY + 
Sbjct: 180 FERVWQQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227


>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
 gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
          Length = 246

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIP 58
           RILL++D+  LA S+   L+ E  +V V   G    EL +      +D ++LD  L  + 
Sbjct: 3   RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR
Sbjct: 63  GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + G  +    +  GDL ++ + +    QG  IHL+ KE++++E         LT E    
Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFI------CKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ G D P   ++   +                 G    I  V+G+GY     A+D
Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRR-------LRLPGSPELIHAVYGKGYRFGPVAED 232


>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
          Length = 230

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ L++E   V+    G D + L +  +   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K V V   +I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGTLVLDKKRKIVTVDEKKIRLTPIEYRILELLIENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+        Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINPREPRYLKVVWGIGYKIQE 230


>gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 240

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   I   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLIIDYLRAASYTPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q L     L ++         G  + LT  E+++++ LSL      ++E  LNHLY
Sbjct: 131 QRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ]
 gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ]
          Length = 232

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L +  + V     G +G+ L      D ++LDLGL D+ G E+
Sbjct: 8   ILVIDDEAQIRKFLRISLVAHGYRVLEAGCGREGLTLAAEARPDLLVLDLGLPDMDGKEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           L  LR      PV +LS  +   +KV  L  GA+DY++KPF+  EL+AR+R ++RR  S 
Sbjct: 68  LAELRRDS-QVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASP 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G L+V+LD + V++ G  I LT KEY ++ +L+      +T++  L  ++ 
Sbjct: 127 GQGPGTLNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   + V +  LR+KL +      +I T  G GY LRE A 
Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPRFIVTEAGIGYRLREQAP 232


>gi|332671154|ref|YP_004454162.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332340192|gb|AEE46775.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 264

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 17/232 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A ++     +E + V V   G  G+      + D ++LD+ L  I G EV
Sbjct: 30  VLVVEDEPAIAQAVAHRFSAEGWRVEVAADGPSGVSAATRVQPDLVVLDVMLPGIDGLEV 89

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++  +   PV +L+      D + GL  GADDY++KPF+  ELVAR +A++RR    
Sbjct: 90  CRQIQAERP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKALLRRQERA 148

Query: 123 -----------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          +V GD++V+   + V      +HLT  E+ ++  L+    T LT+
Sbjct: 149 ARAAEIAVAAVPDPPLVIGDVTVDRAQRRVTRGDREVHLTPTEFDLLVALANSSRTVLTR 208

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++D  D    + +D  +  LR+KL         I TV G GY    
Sbjct: 209 ERLLAEVWDWVDASGTRTVDSHVKALRRKLGAD-----LIRTVHGVGYAFEP 255


>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 219

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 135/223 (60%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+++ I++ L +  +       G +  +  +   FD I+LD+ L +I G+E
Sbjct: 3   RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R   +  PV  L+  ++ EDKV+GL++GADDY++KPF   EL+AR+  ++RR + 
Sbjct: 63  LMDYIR--PLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQK 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S +  GDL +++ A+ V+ QG  ++LT KEY+++ LL   KN  L ++     ++  
Sbjct: 121 -TESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + + +D+ + +LRKK+    G ++ I+TV+  GY L ++
Sbjct: 180 GYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218


>gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
 gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1]
          Length = 229

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 9/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++L+++D+  +   ++  L+ E + V   + G   +++   +  D I+LD+ +    G 
Sbjct: 7   IKVLVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGV 66

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R      +  +  L+       +V     GADDYI+KP     L++RI A+ RR
Sbjct: 67  ETCLQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRR 126

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +   Q  I   DL+++  + T++  G  I L  KE++++  L+   N   +++  L 
Sbjct: 127 ELKKEQEQVQIKIKDLTIDRGSYTIDKSGKTITLPKKEFELLYFLAKNPNMVFSRDELLQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++        + +DV I K+R+K+ +      YI TV G GY  
Sbjct: 187 NIWGADVFVLARTVDVHIRKVREKIGDD-----YITTVKGVGYKF 226


>gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8]
 gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter
           xylosoxidans A8]
          Length = 219

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E++ V     G       +   +D I+LDLGL    G 
Sbjct: 1   MRILLVEDDLMIGESVLDFLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV I +   ++ D++ GL +GADDY+ KP++ +EL+AR+RA++RRS 
Sbjct: 61  SLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     ++++  +    V G  + LT +E+ ++E L  R     ++      LY 
Sbjct: 121 GRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      ++V+I  LRKKL     G N I+ V G GYV+
Sbjct: 181 WKESISSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216


>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  + +  + V+  ++TV V G  I +T  E++++      +   +++E  +  
Sbjct: 124 TINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGQKATC---IVTVVRTGYKFE 225


>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
 gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
          Length = 224

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 224

 Score =  255 bits (654), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 112/221 (50%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ALA  +      E + V     G+ G+EL      D ++LD+ L  + G+ 
Sbjct: 3   KILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  A R    S P+ +L+      D VRGL+ GADDY+ KPF+  EL+AR+RA +RR R 
Sbjct: 63  ICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRRHRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +     GD  ++ D+  +  +G  + LT KEYQ++E L +     LT++  +  ++  
Sbjct: 123 EDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTRQGIMASVWGS 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  +  LR K+        ++ T+   GY   
Sbjct: 183 SVMVTQRSVDRCVTTLRGKIEKEPSRPRHLLTIRDVGYRFE 223


>gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 219

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L    F V     GE      +     A +LDLGL    G 
Sbjct: 1   MRILLVEDDPLLGDGLRAGLTQAGFQVDWVRDGEAASRELRSAVHAAAVLDLGLPRKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A +  PV +L+   ++ D+V GL SGADDY+ KP + +EL AR+RA++RR+ 
Sbjct: 61  EVLAETRRAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAARLRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q L+  G++ ++  A+TV   G  + L+ +E+ ++  L L     LT+E    HLY 
Sbjct: 121 GQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTREQLEQHLYR 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V +  LR+KL     G   ++TV G GY+L
Sbjct: 181 WGREVESNAVEVHVHHLRRKL-----GAELVQTVRGVGYLL 216


>gi|264680754|ref|YP_003280664.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|299529368|ref|ZP_07042806.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|262211270|gb|ACY35368.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|298722617|gb|EFI63536.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 231

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 125/229 (54%), Gaps = 15/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A  +   L    + V V     +         FDA++LDLGL D  G 
Sbjct: 1   MRILVVEDNEGIAAGLRTNLMQRGYAVDVCASVAEAWHALSAERFDAVLLDLGLPDGDGS 60

Query: 61  EVLRALRVA----------KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           EV+R LR+             +TPV IL+    ++D+V GL  GADDY+ KPF+ +EL A
Sbjct: 61  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+RA++RR+ G A  +I   DL V+  A+T+   G ++ ++ +E+ ++  L L +   L+
Sbjct: 121 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     HLY   D  E   ++V++  LRKKL     G+  I T+ G GY
Sbjct: 181 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGY 224


>gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1]
 gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI1]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 ALNSS-LEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|253998110|ref|YP_003050173.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
 gi|253984789|gb|ACT49646.1| two component heavy metal response transcriptional regulator,
           winged helix family [Methylovorus sp. SIP3-4]
          Length = 226

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F   +   G DG  +     +D IILD+ L    G+
Sbjct: 1   MRILVVEDEHKTGEYLRKGLTEAGFVTDLIQDGLDGQHMALAEHYDLIILDVMLPRASGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++ ALR A   TPV  L+    +ED+V+GL+ GADDY+ KPF   EL+ARIR ++RR R
Sbjct: 61  QIIAALRKAGKHTPVLFLTARDLVEDRVKGLELGADDYLVKPFAFSELLARIRTLLRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L V++  + V+  G +I LT KE+ ++ELL  R+   L++ +  + ++D
Sbjct: 121 TREADVLQVANLEVDVLRRRVQRDGKKIELTAKEFGLLELLVRRRGEVLSRSLIASQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+V + +LR K+ +       I TV G GYVL
Sbjct: 181 MNFDSDTNVIEVAMRRLRAKI-DDPFEPKLIHTVRGMGYVL 220


>gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39]
 gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI39]
          Length = 240

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEADA 236


>gi|253701719|ref|YP_003022908.1| transcriptional regulator [Geobacter sp. M21]
 gi|251776569|gb|ACT19150.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M21]
          Length = 235

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+ A+   +   L SE F ++  D G  G+        D I+LDLGL D+ G E
Sbjct: 11  RILVIDDEAAIRRFLHSALSSEEFTLHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA +RRS  
Sbjct: 71  VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +  +GDL+V+L+ + V V+G  + LT  EY ++ LL    +  +T    L  ++ 
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGGEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + +++ V I  LRKK+        +I T  G GY L++
Sbjct: 190 VAYQEQPQVLRVTISNLRKKIERDPSRPRHITTEPGVGYRLKQ 232


>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
          Length = 231

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   I   L+   F+V      +   EL      D ++LD  L D  G  
Sbjct: 5   RILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDGDGVS 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +  LR    +   P+ +L+  S   DK  G   GADDY++KPF+  EL+ARI A +R  
Sbjct: 65  WIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLRHR 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A   SLI  G+L +N D + V      +  +  E++++  L        ++   L+H
Sbjct: 125 VQAALPVSLIQMGNLQLNPDTQRVNAGSLHLECSSSEFKLLHFLMQHPERVFSRRQLLDH 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      E + +D  I +LR+ L  A  G +YI+TV G GY  
Sbjct: 185 VWGEDAFVEERTVDTQIGRLRRLLETANIG-HYIQTVRGSGYRF 227


>gi|315606091|ref|ZP_07881122.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312373|gb|EFU60459.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD A++  +   L  E ++V     G   +        D ++LDLGL DI G +V
Sbjct: 4   VLLVEDDPAISEPLARALGREGYDVRAHATGGQAL--ADARGVDLVVLDLGLPDIDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +    P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  ARELRASGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQTSE 121

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  +   D+ +++ A         + LT KE+ ++ +L     + + +E  +  ++  
Sbjct: 122 PAEGELRAQDIRMDVAAHRAFAGDTELSLTAKEFDLLRVLLREAGSVVARETLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 K +D+ +  LR+KL + A   +YI TV G G+   
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDATDPHYITTVRGMGFRFE 222


>gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED++ +   +   L++  F       G + ++  K    + I+LD+ L    G+ +
Sbjct: 2   IYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELILLDIMLPGDDGYTI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  L+        PV +++   +  DKV+GL+ GADDYI+KPF   E VAR++A++RRS 
Sbjct: 62  LEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRSA 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +    +   +L +N+    V  +  ++ LT KE+++++ L   K   +T+   L H++
Sbjct: 122 RQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E + +DV +  LR+KL  A    N IETV G GY +
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGEAG---NLIETVRGVGYRI 220


>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Listeria monocytogenes HCC23]
 gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS
Sbjct: 61  FELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + +DV I +LR        G   I TV G GY L E
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEE 223


>gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
 gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501]
          Length = 243

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    + V     G DG  L    ++D ++LD+ L  + G+
Sbjct: 20  MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K  T V +L+    +E KVRGL+SGADDY+ KPF   EL+ARIR ++RR  
Sbjct: 80  EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 138

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  S +   DL ++         G RI LT KE+ ++ LL  R    LT+      ++
Sbjct: 139 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  ++DV I +LR K+ +   G   I T+ G GYVL 
Sbjct: 199 DINFDCDTNVVDVAIRRLRMKV-DEPFGDRLIHTIRGVGYVLE 240


>gi|120555233|ref|YP_959584.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325082|gb|ABM19397.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 244

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++    V +   G   +E  +  + D ++LDL L    G  
Sbjct: 12  RILIVEDDERLADLTREYLENNGLTVSLETHGGAAVERIRNEQPDLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + P+ +L+  +   D+V GL+ GADDYI KP     L+ARIRA++RR   
Sbjct: 72  ICRRVRPF-FNGPIIMLTARTDDLDQVLGLEMGADDYIGKPVQPRVLLARIRAMLRRVET 130

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  + G     +   DL V+   +   +    I LT  E+ ++ LL+      L++
Sbjct: 131 SPVSGQETSGEEPVRLQFNDLVVDRSMREAWLSDESIDLTSAEFDLLWLLASNAGRVLSR 190

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + A
Sbjct: 191 EEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLFVKEA 244


>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 219

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  S+   L++E++ V     G       +   +D I+LDLGL    G 
Sbjct: 1   MRILLVEDDVMIGESVLDCLRAEHYAVDWVKDGNAAELALRTDTYDLILLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR  K  TPV I +   ++ D++ GL +GADDYI KP++ +EL+AR+RA++RRS 
Sbjct: 61  GLLRDLRGRKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     ++++  A    V G  + LT +E+ ++E L  R     ++      LY 
Sbjct: 121 GRAEPVFEHEGITIDPQAHAAMVDGTPVALTAREWAVLEPLIARPGMIFSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +D      ++V+I  LRKKL     G N I+ V G GYV+
Sbjct: 181 WKDSVSSNAVEVYIHGLRKKL-----GPNLIQNVRGVGYVI 216


>gi|323529593|ref|YP_004231745.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
 gi|323386595|gb|ADX58685.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia sp. CCGE1001]
          Length = 228

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +    +++  I +LR KL +       + TV G GYVL    + E  
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPSKLLHTVRGMGYVLEVREEAEPS 228


>gi|255525139|ref|ZP_05392083.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188106|ref|ZP_06856498.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255511193|gb|EET87489.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047232|gb|EFG86674.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 235

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDI 57
           R+L+I+DDK L   ++  ++ EN +  +   G +GI L    +       +ILD+ + DI
Sbjct: 3   RVLIIDDDKELCTLMKKCVEKENLSAIIAHGGIEGIRLVDENKSKGSLSLVILDVMMPDI 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+VL+ +R    + PV +L+  S  +DKV GL+ GADDY++KPF+  EL+AR+ +++R
Sbjct: 63  NGFQVLKIIRETS-NIPVLMLTAKSDEDDKVSGLRLGADDYLTKPFSISELMARVNSLIR 121

Query: 118 RSRGHAQSLIVTGDLS------VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R      +  +  DL       ++   + V V    + LTGKE+ ++  L+  K    TK
Sbjct: 122 RYTTLNPTFPMETDLIALQGMLIDKVNRIVSVNDILVELTGKEFDLLSFLASNKGRVFTK 181

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +     +++     +   I  FI KLRKK+        YI TV G GY   + A
Sbjct: 182 KQIYTQVWEDEYSFDDSNIMSFISKLRKKIEPDPDRPFYILTVRGVGYRFNKEA 235


>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 229

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + VY+   G++GI + K    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     LV+RI AI+RR+
Sbjct: 67  ACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRN 126

Query: 120 RGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 + + +  GDL ++ +A  V   G ++ L  KE++++ LL+ +     T+E  L 
Sbjct: 127 SSTDDVSDNKVEIGDLVIDREAYLVYQNGQKVVLAKKEFELLYLLASKPGKVYTRESILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++       + IDV I KLR+KL        Y+ TV G GY   
Sbjct: 187 NIWEDSVVVTNRTIDVHIRKLREKLGET-----YVATVKGVGYKFE 227


>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
 gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
          Length = 241

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 121/235 (51%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD+A+   +   L   NF+V   + G +  +    ++ D IILD+ L    GF 
Sbjct: 6   QVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIMLPGDDGFI 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+  S   D+V GL+ GADDYI+KPF+  EL+ARI+A++RR++ 
Sbjct: 66  LCQRIRQTS-HVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRRTQF 124

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTKE 172
            ++          ++  +  ++     +       I LTG ++Q++ L     N+ ++++
Sbjct: 125 ASEENQPSAKARYLLFSNWKLDTKQHLLIDDNKDEISLTGADFQLLTLFLDNTNSAISRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                L+        + IDV + +LR+ L + A     I+T+ G GYV   +  +
Sbjct: 185 QICQALHGRDAFANERGIDVHVSRLRQCLKDDAKSPKIIKTIRGAGYVFIADVNE 239


>gi|332884908|gb|EGK05163.1| hypothetical protein HMPREF9456_03076 [Dysgonomonas mossii DSM
           22836]
          Length = 228

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 127/228 (55%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ ++  IE  L    F   + + G    E  +  ++D II+D+ +  + G 
Sbjct: 1   MKILIVEDEQNISSFIERGLNISGFETEICNDGLHAWEKLQITDYDLIIMDIIMPFMSGL 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E+ +A R      TPV +L+ +S+ ED V+GL +GADDYI KPF   EL ARI A++RRS
Sbjct: 61  ELCKAYRQKFGYITPVILLTALSTTEDIVKGLNAGADDYIVKPFKLVELEARINALLRRS 120

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +   +     ++   +L ++ + K     G+ I+LT KEY ++E      N  L+++  L
Sbjct: 121 KVSTEIEDDKILQISNLKLDTNTKQAIRDGNIIYLTAKEYLLLEYFMKNPNRVLSRQTLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++D   +    I+DV++  +R K+    G    I TV G GY+L+E
Sbjct: 181 ENVWDINFDTNTNIVDVYVNYIRNKIQPE-GMDKLIHTVIGLGYILKE 227


>gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
 gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9303]
          Length = 268

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L ++ 
Sbjct: 1   MKPCILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ +   +DKV G  SGADDY++KPF+ EEL  R++A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+            ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRTDRAPVGTNAHHEILSYGPLTLVPERFEAIWFDRPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39]
 gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli IAI39]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHY 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 -TLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
 gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
          Length = 221

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++ELL L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 224

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL    G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKLDPD-GVLNPVETLRGRGYRLK 221


>gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 222

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
 gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
          Length = 224

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G+L +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD      +      +  N+     G  G+ L    ++D IILD  L  + G 
Sbjct: 1   MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G L++ L  + V + G  I L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L + +  + V +    + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 TQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK  I TV G GY+L  + +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKI-----GKERIRTVRGFGYMLVTSEE 221


>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 230

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   I + L+  +++        +   L    + D I+LD  L    G E+
Sbjct: 6   VLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGTSGVEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +     P+ +L+     ++K++GL+ GADDYI+KPF+  ELVAR++A++RR+ 
Sbjct: 66  ARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRAT 125

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S I    L+++     V      I++   EY++++     +    T+   L+ ++
Sbjct: 126 PPGVDSPIEVDGLTLDPIGHRVTTVDGAINMGPTEYRLLQFFMTHQERVYTRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            G    E + +DV I +LRK L +       I+TV G GY  
Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGDRYDH--LIQTVRGTGYRF 225


>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
 gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V V   G + +E  K    D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G+L +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
 gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB
           [Sinorhizobium fredii NGR234]
          Length = 227

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 64  LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     +++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 KPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +   + I TV G GY L 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMPDVIRTVRGAGYSLE 226


>gi|154506023|ref|ZP_02042761.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
 gi|153793522|gb|EDN75942.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD  L   +E  L  E + +   +  E G +L K    D I+LD  L D  GF +
Sbjct: 4   ILIIEDDADLREGLEYTLSGEGYQILTAENAERGRKLWKTSSCDLILLDCNLPDGNGFSL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R       + +L+   +  D+V+ L+ G DDY+SKPF+   L ARI+ ++  SR  
Sbjct: 64  CSEIR-KSSDVFILMLTARDTELDEVKALEMGVDDYMSKPFSIAVLKARIKKLL--SRKS 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  I +  + ++  +  V  +   + L+  EY+++          L+KE  L  ++D  
Sbjct: 121 EKQWISSNGIRLDKSSCQVICKEEVLELSKIEYKLLLYFLENPGQILSKEQILERIWDKD 180

Query: 183 D-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +   + V I +LR+K+        +I+TV G GY+ RE  K
Sbjct: 181 GKFVDENTVSVNIRRLRRKIEADPQNPQWIQTVHGLGYIWREEEK 225


>gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. W3110]
 gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB
 gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655]
 gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component
           regulatory system with QseC [Escherichia coli str. K-12
           substr. MG1655]
 gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K12 substr. W3110]
 gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli str. K-12 substr. DH10B]
 gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BW2952]
 gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family
           [Escherichia coli DH1]
 gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1]
          Length = 219

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L++++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 254

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  ++  +   L+   F   +   G   ++  +    D +ILD+ L  + G EV
Sbjct: 25  VLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPLMSGLEV 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR  R       V +LS     +D++ GL+ GADDY+ KPF+  E + R+ A++RR+   
Sbjct: 85  LRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAERL 144

Query: 123 AQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               ++        + V+  ++T  V G  + LT +E+ ++  L      T TKE  +  
Sbjct: 145 GAVTLLPKVTERLGVRVDTGSRTATVDGRGVELTTREFDLLAYLIAHPGLTFTKEQLMRR 204

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++      +   + V + ++R+K+         I TV G GY   +  +
Sbjct: 205 VWGWDF-GDTSTVTVHVRRVREKIETDPSDPQRIVTVRGAGYRFGDPEE 252


>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 226

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +EL L    +       G + I+  + +  D ++LD+ + ++ G+E 
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++      D V+GL+ GADDY++KPF++ EL+ARI A++RR+ G 
Sbjct: 64  CRRIRSFS-NVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRRTAG- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I    L  + +  TV  +   I LT KE+ ++ LL    N   ++   +  L+   
Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWGYL 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            + E + +D  +  +R+KL  A      Y++TVWG GY   
Sbjct: 182 ADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 239

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 9/232 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED+  +A ++++ L+ E + V V   G+ G+E       D I+LD+ L  + 
Sbjct: 1   MKKSILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVMLPGLN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVLR +R   I  P+ +L+   +  DKV GL  GA+DYI+KPF  EE++AR+R  +R 
Sbjct: 61  GIEVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRH 120

Query: 119 S------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DLSVNL+ + V  +  +I LT KEY ++  L   KN  L+++
Sbjct: 121 RAIVQDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L  ++    E E  ++DVFI  LRKKL       + I+T+ G GYV+R++
Sbjct: 181 NILLTVWGYDYEGETNVVDVFIGHLRKKLEEDTTS-SLIQTIRGVGYVIRKD 231


>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
 gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
          Length = 233

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   ++  N+N  + + G + +   K    D IILD+G+ ++ GFEV
Sbjct: 4   ILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  LS      D++ GL+ G DDY++KPF+  ELVARI AI++R+ G 
Sbjct: 64  CREIR-KHSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTNGP 122

Query: 123 ------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   S +  G + ++   ++V   G  + LT  E+++++L   R   T +++  ++
Sbjct: 123 KITGEAKPSQLQAGGVQLDPSYRSVAYNGQPVELTSIEFEILKLFLDRPRMTFSRDRIID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R KL   AG  N IETV   G+ L
Sbjct: 183 LAYPPNIHVSDRTIDSHIRNVRSKL-TTAGAPNLIETVHAVGFRL 226


>gi|17549773|ref|NP_523113.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17432028|emb|CAD18705.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 246

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 125/242 (51%), Gaps = 14/242 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---------YEFDAIILD 51
           MR+LL+EDD  +  ++   L+ + F +     GE  ++               FD ++LD
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63

Query: 52  LGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVAR 111
           LGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL AR
Sbjct: 64  LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123

Query: 112 IRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           + A++RR  G A  L+  G++ +N   + V   G  I L+G+E+ ++  L  R     + 
Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPIKLSGREFAVLHALLSRPGKVWSI 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
               ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A     E
Sbjct: 184 AQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPTPPAE 238

Query: 232 YL 233
             
Sbjct: 239 PA 240


>gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli W]
 gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B]
 gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357]
 gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
          Length = 240

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L  I G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGIDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|148360632|ref|YP_001251839.1| two component response regulator [Legionella pneumophila str.
           Corby]
 gi|148282405|gb|ABQ56493.1| two component response regulator [Legionella pneumophila str.
           Corby]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F       G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+AR+++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KESPILLKINDLTINLQKHTAIRGDKKLPLTAKEFMLLTFMLKRSGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV I +LR+K+ N    K  I TV G GYVL 
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVLE 221


>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   I   L  E F       GE+ +   +    D IILD+ +  + G +
Sbjct: 4   KILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R    +TP+ +LS      DK+ GL+ GADDY++KPF+ +EL +RIRA  R+   
Sbjct: 64  VCRSIR-KSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                             L +N       +   +++L+ KE+Q++ +L    NT LT+E 
Sbjct: 123 LFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVLTREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++   +  E+  + V I  +RKKL       ++I+T+WG GY  +E
Sbjct: 183 IYEYVWG-DEYGELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228


>gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 222

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+      + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +EP    ++V I  LR K+     GK+ I TV G GY+L   A +E+
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRGFGYMLV--AAEES 222


>gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110]
 gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110]
          Length = 231

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           MRILL+ED+  L  +I+ +L   N+ V     GE+  +L +     +   I D  L  I 
Sbjct: 1   MRILLVEDENDLGTAIKRVLIQHNYIVDWAKDGEEANDLIEMGLNLYTIGIFDWLLPKIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++ +R    S P+ +L+     EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GIDLIKKIRQQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +  G ++++    T+  +        I LT KE+Q++E      N  +T++ 
Sbjct: 121 FPTINPQKLTVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVTRDQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ L++  +EP   ++   I  LR+KL    G  NYIETV+G GY  
Sbjct: 181 LLSQLWEWGNEPMSNVVAAQIRLLRRKLEPHCGD-NYIETVYGLGYRF 227


>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 230

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ EDD   AH I   L+ +  +V V   G   ++  +    D ++LD+ +  + G +
Sbjct: 7   RVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMPKLDGMD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+     +  ++GLQ GADDY++KPF+  EL AR+RA++RRSR 
Sbjct: 67  VCRVLRSDS-QVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRRSRP 125

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++   G L+V+     V V G  + +T +E+ ++  L+       ++   ++  +
Sbjct: 126 ESGPPTVFQVGRLTVDTGRVRVSVDGEPVSVTAREFAVLAALAAEPGRVFSRLDIVHRAF 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +D  I  LR+K+         + TV+G GY L
Sbjct: 186 GFDSHVSPRTVDAHIANLRRKIEPDPAHPVQLLTVYGHGYTL 227


>gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 121/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +I++ L+ E  NV     G + +E+    +   ++LD+ +  + G   
Sbjct: 8   VLVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R ++ + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 68  CLKIRESR-NIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R + Q LIV  DL+++   K V ++G  I LT  EY+++ LL+       + +     
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++         + V I ++R+K+   +    YI+ VWG GY +
Sbjct: 187 VWEEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKI 230


>gi|150017695|ref|YP_001309949.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904160|gb|ABR34993.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 118/232 (50%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+ +L   ++ ++  E F  V+        +E  K     A+ILD+ L D  GF
Sbjct: 8   KILIVDDELSLLTMVKDIMLKEGFQTVFTASNCHMAMEKFKEVNPHAVILDVMLPDGDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +++ LR+   + PV  LS     E+++ GL  GADDY++KPF   EL+ R+ AI+RR+ 
Sbjct: 68  SLIQKLRMIS-TVPVLFLSARDEDENRLLGLGLGADDYMTKPFLPRELILRLNAILRRTY 126

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   +     G++ +++++ TV+ Q   + LT KEY +++ L   K   +T +  
Sbjct: 127 NSTIVKPEEKPTFYLGNIFIDMNSGTVKKQEEELTLTAKEYALLDKLYSNKGNIVTIDAL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +++         + V I +LR+K+        Y+ TV G GY L    +
Sbjct: 187 CKAVWNDNFFGYENTLMVHIRRLREKIETEPSHPKYLLTVRGLGYKLVPEVQ 238


>gi|229823556|ref|ZP_04449625.1| hypothetical protein GCWU000282_00854 [Catonella morbi ATCC 51271]
 gi|229787000|gb|EEP23114.1| hypothetical protein GCWU000282_00854 [Catonella morbi ATCC 51271]
          Length = 238

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/238 (27%), Positives = 114/238 (47%), Gaps = 15/238 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M +L+IED++++   + +  + E F  +    G +G          +D ++LD+ L  + 
Sbjct: 1   MNVLMIEDNESVCEMMSMFFEKEQFQGHFYHDGLEGYNAYAESPSKWDIVLLDINLPSMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + R +R     TP+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR
Sbjct: 61  GITICRNIRKISKETPIIMLTAQDSESDQVIGLEMGADDYVTKPFSPLTLMARMKALYRR 120

Query: 119 SR----GHAQSLIVTG------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNT 167
           S+     H+Q+    G       + +N   +        I  LT KE+ ++         
Sbjct: 121 SQIPGTDHSQTQEEEGFDVVTKSVKINTVTREAYYNNQLIENLTPKEFDLLLTFVRSPKR 180

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E  L  L++     + + +D  I KLR+K+     G   I+TVWG GY   +  
Sbjct: 181 VFNREQLLKQLWEDPFYGDERTVDAHIKKLRQKIEVI--GPQIIQTVWGVGYKYEDPG 236


>gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200]
 gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200]
          Length = 236

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           +IL++EDD ++A  +++    E ++V +   G + +E+ K     +D + LDL L    G
Sbjct: 3   KILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R   IS P+ +L+   S  D++ GL  GAD+Y++KPF+   L+ARI+A+ RRS
Sbjct: 63  IEVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRS 122

Query: 120 RGHAQSLIVTG--------DLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                     G         L ++ D + V      +  LT KE+ ++  ++ ++    +
Sbjct: 123 HLEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQKQVFS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL  A  G   ++TVWG GY   ++
Sbjct: 183 RDKLLELVWGYEFFGEERTVDAHIKKLRQKLEKA--GPQVVQTVWGVGYKFDDS 234


>gi|153811126|ref|ZP_01963794.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
 gi|149832624|gb|EDM87708.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174]
          Length = 230

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +IE+ L  E  ++     GE  I + + +  D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKEIVEAIEIYLTQEGHHILKAYDGEQAIRVLQNHPVDLLIIDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K + P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-KNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQL 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +++  TG L ++ D K V V G  + LT  EY+++  L   +    +      
Sbjct: 123 GAMTEKKENIYETGGLMIDDDRKEVTVDGESVKLTPIEYRILLFLVQNQGRVFSINQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 NIWNEEAIAADNTVAVHIRHIREKIEINPKEPRYLKVVWGLGYKVEK 229


>gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
 gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH]
          Length = 221

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFIDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++ELL L K+  L++      L  
Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|116049749|ref|YP_791444.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389810|ref|ZP_06879285.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313110495|ref|ZP_07796380.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|115584970|gb|ABJ10985.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882882|gb|EFQ41476.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 235

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR   
Sbjct: 68  VCREIRRV-ANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAP 126

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN + 
Sbjct: 127 LPASPESLTFGKLNIDRRRREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQIR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + +DV I KLR KL +       I+TVWG+GY+   
Sbjct: 187 GIGFDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFNP 230


>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
 gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
           [Bacillus amyloliquefaciens DSM 7]
 gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
           TA208]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +   + LM++   F+V   + GE  ++L +    D IILD+ +  + GFEV
Sbjct: 4   ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R      P+ +L+      DKV+G  SGADDY+ KPF   EL AR++A+++R R  
Sbjct: 64  SEAVRSF-TDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYRIT 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A+ L+  G ++++  ++TV   G   + L  +E++++  L+   N T ++E  +  ++  
Sbjct: 123 AEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +DV I +LR++          I TV G GY   
Sbjct: 183 DYEGDERTVDVHIKRLRERFPEK-DYPFAIHTVRGLGYRFV 222


>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Erwinia amylovora CFBP1430]
 gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
 gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora CFBP1430]
 gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia amylovora ATCC BAA-2158]
          Length = 233

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST-VDLLLLDVMMPKKNGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q  +   +         L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQHLQHDNSSPTLDIDLLRLNPGRQEASFDGQTLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLMV 230


>gi|226954227|ref|ZP_03824691.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|294650125|ref|ZP_06727506.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835034|gb|EEH67417.1| two-component response regulator [Acinetobacter sp. ATCC 27244]
 gi|292823975|gb|EFF82797.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 219

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   + +++D ++LD GL    G 
Sbjct: 1   MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+++R   + TPV  ++    I D+V GL  GA+DY+ KPFN EEL AR+R+ +R+ +
Sbjct: 61  QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DL ++  AKT+      ++LT KE+Q++  L  + +   T+E     LY 
Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE E   I+VFI ++RKK+     G  YI+TV G GY + + 
Sbjct: 181 WGDEIESNAIEVFIYQIRKKI-----GGQYIKTVRGLGYRMHQE 219


>gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family
           [Shewanella amazonensis SB2B]
          Length = 224

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD ALA ++   L+   ++V V   GE G+     Y++DA I+D+GL  + G 
Sbjct: 1   MRLLLVEDDAALAANLGDHLRENLYSVDVAADGELGLFQGLEYDYDAAIIDVGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR      P+ IL+   S EDKV GL +GADDY++KPF+  EL +R++A++RRS 
Sbjct: 61  SLVTKLRAEGREFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I  G +++N  +  V + G R+ L+  E+++++ L + +    +K M   H+YD
Sbjct: 121 GKASPVIENGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL         IET+ G+GY L
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NELGLIETLRGQGYRL 220


>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 237

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ++A  I + L    + V      +    + K    + IILD  L    G +
Sbjct: 4   RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQ 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + LR  + +   P+ +L+  S   DKV GL SGADDY++KPF+ +ELVAR+RA++RR 
Sbjct: 64  FAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQ 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVE-----VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +  +  G L ++  +  V       +   I L   E+++++          ++  
Sbjct: 124 MPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRAS 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++      E + +DV I +LR  L        YIETV G GY + +  
Sbjct: 184 LLDKVWGSEVYIEERTVDVHIKRLRAALVP-FDCDRYIETVRGSGYRITKTP 234


>gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA
           [Pseudonocardia sp. P1]
          Length = 232

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 8/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DDKA+  S+   L    + V + + G+  ++       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDKAVRDSLRRSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVMMPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR A    P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRV 120

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                      + +   DLS++ D + V   G  I LT  E+ ++ELL       LT+  
Sbjct: 121 PDTDDGADPPSAALTFADLSLDPDTREVSRGGRSISLTRTEFSLLELLLAHPRRVLTRGQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L  ++          ++V++  LR+K     G    I TV G GYVLRE+  
Sbjct: 181 ILEQVWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRESPP 232


>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
 gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
           12442]
          Length = 245

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 11/233 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++DD  +   IE+ L+ E F V     G + + +    +   +ILD+ +  +
Sbjct: 14  MKQQSILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIMMPAM 73

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G EV R +R    + PV  LS  ++  DKV GL +GADDYI+KPF+  ELVAR++A +R
Sbjct: 74  DGIEVCRRIRERH-TIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 132

Query: 118 RS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R            ++ I    L ++  ++ V +    I+LT  EY ++ L++  +N   T
Sbjct: 133 RYTYFNHMPSEVHKNKIKIRGLEIDELSRKVMLYEKAINLTKTEYDILHLMAKNRNRVFT 192

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E     ++  R       + V + +LR K+         I+ VWG GY + +
Sbjct: 193 LEEIYESIWRERAHESNNTVMVHLARLRNKIEENPKKPTVIQNVWGVGYKIED 245


>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
 gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
           43184]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  L+     V V + G+ G EL +  +F  +ILD+ +  + G +
Sbjct: 3   KILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNGLQ 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R      +PV +L+ + + +D V GL +GADDY+ KPF+ +EL ARI+A++RR+ 
Sbjct: 63  LCKQYRQTYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLRRTG 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  GDL+++  +         I LT KEY+++E L   + T  ++   L +++
Sbjct: 123 AEPAVPLLSCGDLTLDPSSHRAIRGKVVIDLTVKEYRLLEYLIRNRGTAQSRLTLLKNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +    ++DV++  LR K+      +  I TV G GY++ 
Sbjct: 183 DKNFDTNTNVVDVYVNYLRSKIDKDF-DRKLIRTVVGVGYMME 224


>gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222]
 gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01]
 gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222]
          Length = 219

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+  ++   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDEPRLGQQILETLEGADWVPELSQDGIDALYRATSEEWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  GDLS++  +  V  QG  + LT  EY+++      +N  +++   + H+Y 
Sbjct: 121 GSAAPILQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VFI ++RKK+         I+TV G GY L
Sbjct: 181 QDFDRDSNTVEVFIGRIRKKI-----APKIIKTVRGLGYQL 216


>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
 gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
          Length = 228

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNSKEHQTTVNYKDLTIEKENRIVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. EDL933]
 gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227]
 gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. Sakai]
 gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11]
 gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a]
 gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026]
 gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str.
           REL606]
 gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
           str. TW14359]
 gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9]
 gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11]
 gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli ED1a]
 gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli UMN026]
 gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli B str. REL606]
 gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli BL21(DE3)]
 gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O157:H7 str. TW14359]
 gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O26:H11 str. 11368]
 gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O103:H2 str. 12009]
 gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O111:H- str. 11128]
 gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70]
 gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. 493-89]
 gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H-
           str. H 2687]
 gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14]
 gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010]
 gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68]
 gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180]
 gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357]
 gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v]
 gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae
           155-74]
 gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74]
 gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 223

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++D++++ H + L L+ E++ V     GE+ ++L     FD IILDL L D  GF
Sbjct: 1   MHILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR ++   P+ +L+    + DK+ GLQ GADDY++KPFN  ELV R++ +++R  
Sbjct: 61  DLIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120

Query: 121 GHAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                     D  L+++   +T+ + G  + LT +EY ++ L          +E  L  +
Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +D+ + +LRKKL         ++T++G GY   +
Sbjct: 181 WGFDFSGQTRAVDIMVQRLRKKLGP---QGERLKTIYGAGYKWVD 222


>gi|22538097|ref|NP_688948.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|25011986|ref|NP_736381.1| hypothetical protein gbs1948 [Streptococcus agalactiae NEM316]
 gi|76788392|ref|YP_330516.1| phosphate regulon transcriptinal regulatory protein PhoB
           [Streptococcus agalactiae A909]
 gi|76797930|ref|ZP_00780191.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77405067|ref|ZP_00782167.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
 gi|77412880|ref|ZP_00789084.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|22535003|gb|AAN00821.1|AE014280_13 phosphate regulon response regulator PhoB [Streptococcus agalactiae
           2603V/R]
 gi|24413529|emb|CAD47607.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76563449|gb|ABA46033.1| phosphate regulon transcriptinal regulatory protein PhoB, putative
           [Streptococcus agalactiae A909]
 gi|76586704|gb|EAO63201.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Streptococcus agalactiae 18RS21]
 gi|77161020|gb|EAO72127.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           515]
 gi|77176361|gb|EAO79130.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae
           H36B]
          Length = 225

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+   F        E   E  +    D I+LD+ L    G  +
Sbjct: 2   IYCVEDDADIREMMLYTLQMAGFKAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLTI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV + +   S  DKV+GL  GADDY+ KPF   E+++RI+A++RRSR
Sbjct: 62  LERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRSR 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ I+ G+L ++     V+    +IHLT KE++++ L     N   T++  L+ ++
Sbjct: 122 QVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +   E + +DV I  LR KL         I TV G GY L E
Sbjct: 182 GEQFLGETRTVDVHIGTLRTKLGEDGY---LIATVRGVGYRLEE 222


>gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 230

 Score =  255 bits (654), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  +A  +EL L  E ++V + + G  G +     EFD +ILDL L  I G E
Sbjct: 4   RILIIEDELKIARFLELELVHEGYDVVLENDGRSGCDKALAEEFDLLILDLMLPCISGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ IL+    + DKV GL +GA+DY++KPF  EEL+AR+R I++R   
Sbjct: 64  VCRRIRRQS-QVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYGT 122

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +  +++  G L+++ D   V      I LT KE+Q++  L   +   +T+E  L +
Sbjct: 123 INVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILEN 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++         + DV+I  LR K+ +   G   I T+ G GY  
Sbjct: 183 IWGIDYMGLTNVTDVYIRYLRTKI-DDKYGVKLIHTIRGMGYKF 225


>gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum nigrificans DSM 574]
          Length = 222

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ L+ ++  +LK  N+ V     GE G  + +   +D IILD  L    G 
Sbjct: 1   MRLLLVEDEQRLSDALAYILKKNNYAVDTAYDGETGQAMAETGIYDIIILDRMLPCKEGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR   I TPV +L+   ++E+++ GL +GADDY+ KPF+  EL+AR+RA+ RR  
Sbjct: 61  EILKELRNQGIGTPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRRRN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    L ++     V   G  I LT KE  ++EL        +T+E  L+ ++
Sbjct: 121 VQLGGDKLEAWGLILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   +++++  LRKKL+        IET+ G GY L+
Sbjct: 181 GLDSDVETGTVEIYVHYLRKKLN---FRDISIETIRGVGYCLK 220


>gi|289646445|ref|ZP_06477788.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 246

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +    +LT++  
Sbjct: 132 PVPGAPGSEDESVSFGDYELSLATRELKRGDVVHMLTTGEFAVLKALVMHARESLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15]
          Length = 239

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +        + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 17  MKILLIEDNQRTQEWVTQGFSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 77  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 136 AL-NSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 195 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 235


>gi|302554937|ref|ZP_07307279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302472555|gb|EFL35648.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 238

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 76/228 (33%), Positives = 125/228 (54%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E +       GED +     +  D ++LDL L  + GF 
Sbjct: 11  RLLVVDDDPPIADLVATVARYEGWEAVTAYSGEDALRRAADFHPDIVVLDLMLPGVDGFG 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS G
Sbjct: 71  VLDRLRASGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSAG 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  +S++  GDL+++ D + V      + LT  EY+++  L  +  T LTK   L+H++
Sbjct: 131 PAFQRSVLRVGDLTMDEDTREVRRGDKLLSLTPTEYEVLRYLMRKSPTVLTKAQILDHVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLRENAK 226
           +        ++++ + +LR+KL     G    I TV G GYVLR+ ++
Sbjct: 191 EYGFGGRSNVVELVVSRLRRKLDETDDGAAPLIHTVRGFGYVLRQASE 238


>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
 gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   + L+L+   F V     G   ++L      D ++LD+ +    G E
Sbjct: 3   HILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+  LS +    DKV GL +G DDY+ KPF+  ELVARI A +RR   
Sbjct: 63  VCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVNR 122

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A           +  G L V+LD   V V G  + LT +E++++ LL+ R     + E 
Sbjct: 123 FAPAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLEE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +D  D    K I   I  LR KL  AAGG   +ETVWG GY LR
Sbjct: 183 LHQGAWDNHDPVADKTIMAHISNLRHKLG-AAGGAGLVETVWGFGYRLR 230


>gi|209885691|ref|YP_002289548.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
 gi|209873887|gb|ACI93683.1| transcriptional activator protein CopR [Oligotropha carboxidovorans
           OM5]
          Length = 226

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L +   +D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESAEYLAKAFREAGHVAELARDGEEGLALAQSGGYDVLVVDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    +TP  ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 61  SVIGTLRETGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++    GDL ++  +  V+  G  I L  +E++++E L       +T+ M L +++
Sbjct: 121 GPSEETSYRVGDLELDRLSHQVKRGGTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+ +       + T+ G GY++R+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKI-DKGQEVPLLHTIRGAGYMIRD 223


>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
 gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
 gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
           CA88-4125]
 gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 235

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 5/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ ED+  + + +  +L  E +     + G   + L +  + D IILD+ + ++  +
Sbjct: 1   MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V R +R     TP+  LS      D+V GL+ GADDYISKPF   E+ ARI+ IVRR  
Sbjct: 61  KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +    GDL V  +         R+ L+ +E  ++  L   K   +T++M  
Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           + ++     P+ + +D  I KLRK +         I TV G GY  +  A+
Sbjct: 181 DAVWGYDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYRYQGTAQ 231


>gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
 gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679]
 gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium
           JCVIHMP022]
          Length = 234

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 125/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     GEDG+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQLTREGYDVSAAATGEDGLELFTQGGVDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKI 229


>gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
 gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDK +A+SI L L++E F+V     G + IE+ K    D II+DL +  + G E
Sbjct: 5   KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ LR      P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR   
Sbjct: 65  AIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +  +I  G++ +N   KT  V    I+LT  EY+++E L    N   + E    H
Sbjct: 124 YDNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++     E K + V I ++R+K+        YI+  WG GY   +N +
Sbjct: 184 VWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231


>gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  +IE+ LK+E   V+    G D + L + ++   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K + V G  I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+   +    Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230


>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
 gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
          Length = 235

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ + +SI  +LK E + V     G + +   +    D I+LD+ +  + G   
Sbjct: 6   ILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINNIDLILLDVMMPRLNGLSA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  LR      PV ILS  +   DKV GL  GADDY+ KP+N  EL+ARI+A +RR R  
Sbjct: 66  LMKLRE-NYRIPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLRRYRAW 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +V G L ++   + + V G  + LT  EY+++E L        + E   
Sbjct: 125 GGAAPEADSDTVVNGGLVLDKKRRIILVDGKEVRLTATEYKILEFLMGHLGQVFSAEQIY 184

Query: 176 NHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++ +  +      + V I  +R+K+        Y++ VWG GY + +
Sbjct: 185 ENVWKESANYTVENTVMVHIRHIREKIEIDTKKPRYVKVVWGIGYKMEK 233


>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
           315-B]
 gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 223

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K +   I+   + E   V     G D IE  K  +FD I++D+ +  + GF 
Sbjct: 3   RILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K   PV +LS      DK+ G + G DDY++KPF+ +EL+AR+  IV R+  
Sbjct: 63  SYKEIKKIK-DIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  ++   L ++L  + V V G +I LT KEY ++  L   +N  L++E  LN ++ 
Sbjct: 122 TTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + +D  I  LR  + +    + +I TV G GY  
Sbjct: 182 YDFFGDDRTVDTHIKMLRNSIKDY---RKFIVTVRGVGYKF 219


>gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii SL3/3]
          Length = 234

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+L++ED+  +   I L L+     V   +  E  + L       DA ILD+ L  + GF
Sbjct: 3   RVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ RR  
Sbjct: 63  SLCETIRRTDQQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRVI 122

Query: 121 GHAQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
              +           + +G+  ++ + + +   G  I LT  E+Q++EL      T L +
Sbjct: 123 RTKEEDSNGNTPLGTLTSGEFVLDENRRVLLKAGQPIELTQVEFQIMELFFRNPGTALVR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 183 EKILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPTHIMTVWGYGYRWEE 234


>gi|44888876|gb|AAS48175.1| DNA-binding response regulator [Pseudomonas fluorescens]
          Length = 246

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L+  +E    S+ +        E    L     F+ ++LDL L    G  
Sbjct: 12  KILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             + LR A    P+ +L+       +++GL+ GADDY++KPFN +EL+AR++A++RR   
Sbjct: 72  ACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQAA 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               + G     +  GD  ++L  + ++       LT  E+ +++ L +     LT++  
Sbjct: 132 PVPGAPGSEDESVTFGDYELSLATRELKRGEEVHMLTTGEFAVLKALVMNARQPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRMIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
 gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 228

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 86/227 (37%), Positives = 137/227 (60%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ +EL LK E ++  V   G  G+E     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 220

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IEDD+ +   I+  L ++ + V V   G +G++    + FD I+LD+ + ++ GFE
Sbjct: 4   HILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R    + P+ +L+ +   +D+++G   G DDYI+KPF+    + R+ A++RRS G
Sbjct: 64  VANIIRNQS-NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYG 122

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   ++ V+ D   V V    I LT KE+++++LL   K   +T+E  +  ++ 
Sbjct: 123 ERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E +IID  I  +RKKL        YI+TV G GY +
Sbjct: 183 YEPYGETRIIDTHIKNIRKKL-----NTPYIKTVKGIGYKI 218


>gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 229

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+IEDD  +   +  +++ + +NV     G +G+   +  +F  I+LDL L  + G 
Sbjct: 4   INILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLMLPGMTGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+++ +R  K   P+ ++S     E K+   + GADDY++KPF+ +EL ARI A +RR  
Sbjct: 64  ELIKKIRKTK-KLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYI 122

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +  IV  D+ +N +AK V V G  + LT +E+ ++ELL        +K    
Sbjct: 123 DFNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      +   ++V I  LR KL+ A+  + YIETVWG GY L+
Sbjct: 183 ESVWGDEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKLK 229


>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
          Length = 223

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  L   +   L+ E F V     GE+ ++      FDAIILD+ L  + GFE
Sbjct: 4   HILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLNGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+A+R   + TPV +L+      D++ GL+ GADDY+ KP N  ELVAR+RAI+RR++ 
Sbjct: 64  VLKAIRE-HLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 +     + +D  ++   G  + LT  E+ ++E+L        +KE    +    
Sbjct: 123 IPAQRPIIEHQGILVDE-SLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGR 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     + IDV I  LR KL +   G+  I+TV G GY+ 
Sbjct: 182 KYTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMF 221


>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
          Length = 282

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 41  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 260


>gi|160934057|ref|ZP_02081444.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
 gi|156866730|gb|EDO60102.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753]
          Length = 234

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 115/231 (49%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  +I + L+ E F V+    G + +E+    +   II+D+ +  + G   
Sbjct: 5   ILVVDDDKEIVQAIAINLEQEGFRVFKAYDGLEALEIAMSQDLQLIIIDVMMPKLDGLSA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + P+ ILS  S   DKV GL  GADDY++KPFN  EL+AR+++ VRR    
Sbjct: 65  VLKIRERK-NFPIMILSAKSEDTDKVLGLSMGADDYLTKPFNSMELIARVKSQVRRYTTL 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I  G L  +L+ +++   G  +HLT  E ++ +LL          E   
Sbjct: 124 GDIHAKTGGKTIEIGRLCYDLETRSLFADGEPVHLTATESKIFDLLIRNAGRIFPAEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +++         + V I ++R+K+        Y++ VWG GY + ++ +
Sbjct: 184 ERVWNEPAFSAENTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEKHGR 234


>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 226

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +   L  E + V V D G  G  L   + +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + LR+     P+  L+   ++ D+V GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EMCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A S +   +L ++++ +     G  I L+ KE Q++E         LT +    
Sbjct: 121 TLESPAANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQLLTHQQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           HL+   D+P   ++   I  LR+K+ +    +  I TV+ +GY   +
Sbjct: 181 HLWADSDQPSSNVLAAQIRLLRRKIED-PKERQLIHTVYRKGYRFGD 226


>gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
 gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1]
 gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1]
          Length = 221

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMVALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++V+GLQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DVLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+I    + ++ + + V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 121 GHHHSVIEQSGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4501]
 gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           EC4115]
 gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str.
           TW14588]
 gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia
           coli O157:H7 str. 1044]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 11  MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 71  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 130 AL-NSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 189 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 229


>gi|297588498|ref|ZP_06947141.1| response regulator [Finegoldia magna ATCC 53516]
 gi|297573871|gb|EFH92592.1| response regulator [Finegoldia magna ATCC 53516]
          Length = 239

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K ++++ +  L+ E F V     G++ I++    ++  IILDL L  + G 
Sbjct: 9   IKILIVEDEKNISNAEKKYLEVEGFEVDQAFDGQEAIDMINTTDYSLIILDLMLPKVSGE 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  +R ++  TPV +++      + + GL+ GADDYI+KPF+ + LV +++ I+RR  
Sbjct: 69  KVMEIIR-SRTETPVIMVTAKIDESEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G +S++ D  T    G  I+LT  E+Q+I+ L    N   T++  +
Sbjct: 128 KLGLPKSEKIYFDNGRVSISFDDNTFIKDGESINLTSNEFQIIKTLFSNPNKIFTRDEII 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    E   + ID  I  +R K+ +      YI+T++G GY L
Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 231

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L+++DDK +   + + L++E ++V   + G   ++L + +E   IILD+ L  +
Sbjct: 1   MKNINVLIVDDDKEIRDVLHVYLRNEGYHVLEAEDGLQALQLLQQHEVQLIILDVMLPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G      +R    + P+ +LS      DK+ GL +GADDY++KPF+  EL+AR++A +R
Sbjct: 61  DGIAACLQIRERS-AIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLR 119

Query: 118 RS-----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R      R    S I  GDLS++     V+V+G  + LT  E+ ++ELL+  +    +  
Sbjct: 120 RQNFLSLREEEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVS 179

Query: 173 MFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++ +         + V I  +R+K+        YI+TVWG GY + +
Sbjct: 180 KIHECVWKEQTPFFSDNTVMVHIRNIREKIELVPRKPQYIKTVWGVGYKIEK 231


>gi|307291241|ref|ZP_07571125.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306497472|gb|EFM67005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|315030917|gb|EFT42849.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
          Length = 235

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPGFEV 62
           +IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + G  V
Sbjct: 1   MIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASSEKWDMITLDLNLPSMDGMAV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR+   
Sbjct: 61  CREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAEVA 120

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
             +            ++T    +N   +   +    I  LT KE+ ++  L+ +     +
Sbjct: 121 EAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQVFS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 REQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 233


>gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
 gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5]
          Length = 220

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   + ++N +V      +   +      +D I+LD+ L D  G 
Sbjct: 1   MRILLIEDDTILGAAVRDHVVADNHSVDWVTRLDAANDHLGSAAYDLILLDMMLPDGQGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR     TPV I++ +  I D+++GL  GADDY++KPF+  EL+AR+ A+ RR  
Sbjct: 61  TFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLARLNAVGRRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  GDL ++L A+T+   G  ++LT +E+ ++E         L+KE     LY 
Sbjct: 121 GNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSKEQLEERLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V + ++RKKL +A      +ETV G GY L
Sbjct: 181 FGAEVESNTIEVHVSRMRKKLGSA-----IVETVRGIGYRL 216


>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
 gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
           tuberculosis C]
          Length = 250

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 5/213 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+++LA  +  +L+ E F   V   G   +        D ++LDL L  + G +V
Sbjct: 7   VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    S PV +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 67  CKQLRARS-SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    + +G + ++++   V V G  I L  KE+ ++E L       LT+   ++ +
Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211
           +      + K +DV + +LR K+        ++
Sbjct: 186 WGADYVGDTKTLDVHVKRLRSKIEADPANPVHL 218


>gi|104782036|ref|YP_608534.1| response regulator [Pseudomonas entomophila L48]
 gi|95111023|emb|CAK15743.1| putative response regulator [Pseudomonas entomophila L48]
          Length = 233

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  + G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLDEFRRQKPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQETQCLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI  G L ++L  ++V  +G  + L+  EY ++ +L+      ++++  L  L
Sbjct: 124 EPRLDSDLIQVGGLRIDLAERSVSWRGEEVELSSGEYNLLVVLARNAGEVMSRDRILQQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR++  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRRFDDNAGEARKIKTVWGKGYLF 226


>gi|91976489|ref|YP_569148.1| winged helix family two component transcriptional regulator
           [Rhodopseudomonas palustris BisB5]
 gi|91682945|gb|ABE39247.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB5]
          Length = 241

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 16  MRLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVVDRMLPKRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 76  SVIGTLREKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+      GDL ++  +  V   G  + L  +E++++E L       +T+ M L +++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 196 DYHFDPQTNVIDVHISRLRAKIDKGFDRP-LLHTIRGAGYMIRD 238


>gi|308234020|ref|ZP_07664757.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD ++     + LK+ N++V       D     K      I+LD+ L D  G  +
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNTI 74

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +++  ++  D +RGL +GADDYI KPF+  EL++RIRA++RR++
Sbjct: 75  TRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 134

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ      S+   G + ++     V V    ++LT KEY ++  L L +    T+E+ 
Sbjct: 135 TPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREVL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  ++    E E + +D+ I  LR+KL +A+    Y+ TV G GY ++ +
Sbjct: 195 MQAVWGFDFEGESRTVDMHIKTLRQKLGDASC---YVHTVRGVGYCVKSD 241


>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 231

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 120/228 (52%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +I + L++E + V+    G + I+L + +    II+D+ +  + G 
Sbjct: 1   MNILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                +R   +  P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR  
Sbjct: 61  TATMKIRQDNM-IPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRRYT 119

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  + ++  TG L ++ + K + V    +HLT  +Y++++LL+       T E   
Sbjct: 120 TFGSLERSSAVFQTGGLVIDDEQKVITVDKQEVHLTPVQYKILKLLTANAGRVFTIEEIY 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ R       + V I K+R+K+        Y++ VWG GY + +
Sbjct: 180 EKVWNVRAINPENTVSVHIRKIREKIEINPKEPKYLKVVWGVGYKVEK 227


>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 238

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 115/235 (48%), Gaps = 16/235 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ +  +I + LK++ + V + + G++G++L    +    I+D+ +  + G  +
Sbjct: 5   VLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPIMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+R+ +RR    
Sbjct: 65  TMELR-KNYDFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRRYEQI 123

Query: 122 -------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                                G L ++   K V V G R+ LT KE+ +++LL       
Sbjct: 124 LSLQTASKQDKTEKNPHRFCVGGLELDTYTKDVYVDGRRVKLTPKEFAILQLLMESAGRV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            + +     +++  +    + I V + KLR+K+        Y++ VWG GY + +
Sbjct: 184 YSAKQIYEQVWE-EEAINTETIMVHVRKLREKIEVNPRQPQYLKVVWGVGYKIEK 237


>gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 240

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   + + G+  +   +      I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q++     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQAMDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
 gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Clostridium sp. 7_2_43FAA]
          Length = 227

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 128/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDDK++   +   LK+E +  +     ++  +       D I+LDL L D  GF+
Sbjct: 4   QVLIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNLPDGSGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +  AK + P+ IL+  + + DKV GL+ GADDYI+KPF+ +E+ +RI+A+ RR   
Sbjct: 64  FCKDI-NAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEK 122

Query: 122 HAQSLI-----VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A         +  ++ +N + +TV      I L  KEY+++E     +N   ++E  ++
Sbjct: 123 SASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLID 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++   + +++ +D+ I ++R KL    G  + IETV+G GY++R
Sbjct: 183 NIWEFSYDGDIRTVDIHIRRIRSKLDTN-GHPSVIETVFGVGYMMR 227


>gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 225

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD      +      +  N+     G  G+ L    ++D IILD  L  + G 
Sbjct: 1   MKILMVEDDATTVEYVVKGFIEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G LS+ L  + V + G  I L  KE+Q+++ L   +N  +++ +    ++
Sbjct: 121 SQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 227

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      +     ++ + V     G++G+ L K  ++D +ILD  L  + G 
Sbjct: 3   MRILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRMLPKLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            +L ALR +   TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   + +R+ 
Sbjct: 63  TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + I  G L + L  + V +    + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +IDV I KLR+K     G    IETV G GY L
Sbjct: 183 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRL 223


>gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 225

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL +EDD+A+A  +   L+ E + V      +  + L +   FD ++LD+ L D  G+
Sbjct: 1   MKILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSLPDGDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +  +      PV  L+ +    + V GL  G DDY++KPF  +EL++RI++++RR +
Sbjct: 61  TICKQAKHLH-DVPVIFLTALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVLRRYQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++    L +++    V  +G  + LT  EY+++ +    +   L++   L  ++D
Sbjct: 120 KDALDIVQIQHLEIHIREGKVYREGSEVFLTALEYRLLMVFVNHQGQVLSRSQLLEGIWD 179

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D      + V+I +LR+KL   A     I+T+ GRGY + + +
Sbjct: 180 VAGDFVNDNTLSVYIKRLREKLEKDAAEPEIIKTIRGRGYRMEKGS 225


>gi|238755145|ref|ZP_04616491.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
 gi|238706592|gb|EEP98963.1| Transcriptional regulatory protein basR/pmrA [Yersinia ruckeri ATCC
           29473]
          Length = 220

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L  E +         +   L    ++  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDDLLQKGVALALTREGYACDCAGTAAEANSLIITSQYSMVILDLGLPDQDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   IS PV IL+   ++ED+V GL +GADDY+ KPF   EL+AR+RA++RR +
Sbjct: 61  TLLRQWRRQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + +   DLS+NL  + V ++   + +T KE+ ++  L +R   T+ +E+    LY 
Sbjct: 121 GQSDNFLQQDDLSLNLSTQQVYLRQQPLEITPKEFAILSRLIMRAGHTVNRELLQQDLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+     ++V +  LR+KL     GK  I TV G GY L 
Sbjct: 181 WQDDLGSNTLEVHVHNLRRKL-----GKERIRTVRGIGYRLE 217


>gi|192360772|ref|YP_001980561.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
 gi|190686937|gb|ACE84615.1| response regulator (activator) in two-component regulatory system
           with RstB (OmpR family) [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ LA  +   L + +F V V + G   +   +      +ILDL L    G  +
Sbjct: 6   ILLVEDDRRLAQLVSDFLTANDFRVDVEENGNRVLRQVQNLNPSLVILDLMLPGKDGLTL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+   S  D+V GL+ GADDY+ KP     L+ARIRA++RR    
Sbjct: 66  CKELRPQ-YKGPILMLTARDSDLDQVLGLEYGADDYVIKPAEPRVLLARIRALLRRYYQS 124

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            ++    I  G L +    + V +    +HL+  E+ ++  L+      L+++     +Y
Sbjct: 125 DENTLANINFGQLHIQPSLRKVTLATEEVHLSSHEFDLLLTLAASAGNILSRDFLFQQIY 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +   +   + IDV I +LRKKL +       I+T+WG+GY+   +A +
Sbjct: 185 NREYDGLDRTIDVRISQLRKKLQDDPNNPTRIKTIWGKGYLFIADAWN 232


>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
           carbinolicus DSM 2380]
          Length = 224

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L+  +   L+  NF  ++   G   +   +      I+LDL L    G E
Sbjct: 4   RILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLMLPGRDGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RRS G
Sbjct: 64  ICKEIRGFS-DVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             QS + +  L++   +    + G ++ LT  E+++++ L+       ++E  ++ +Y  
Sbjct: 123 --QSNLHSQGLTLEEASLHANLNGCKLDLTAVEFKLLQHLAAHPGRIFSREQLMDRIYAD 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R     + ID  I KLRKK+  A+ G + I +V+G GY   
Sbjct: 181 RRIVSDRTIDSHIKKLRKKMDTASPGVDLIRSVYGVGYKFE 221


>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 230

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   ++  L +  + V V   G++ ++       D I+LDLGL D+ G +
Sbjct: 5   RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR     TP+ +LS      +K+     GADDY++KPF   EL AR+R  +R +  
Sbjct: 65  VIRELRGWS-KTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAAQ 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  Q+ + +G L V++ A TV + G  + LT KE+ ++ +L       LT    L  ++
Sbjct: 124 QASEQTHLKSGALEVDVLAHTVTLNGAAVKLTPKEFDLLAILVRNAGRLLTHRQLLAAVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +++ + VF+ +LR+KL  +     +I T  G GY L+
Sbjct: 184 GAAHTEDLQYLRVFVGQLRQKLKASPDAPEFIVTEPGIGYRLQ 226


>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIED+++L   +   L+ E F V     G+DG+   +    D +ILDL L  I G E
Sbjct: 5   KVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPVIDGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      +  + +L+  +   D++ G   GADDY++KPF  + L+ RI+A++RRS
Sbjct: 65  VCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRRS 124

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +   QS   IVT  + ++    T  + G  +HLT  E++++  L+        +   ++ 
Sbjct: 125 QAGEQSRDVIVTRGIEIDRINHTARLNGEELHLTPTEFRLLWTLARSPGRPFGRNELMDR 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                     + IDV +  LR+KL   A   + +ETV G GY  R    +   E
Sbjct: 185 CRGEDANALERTIDVHVRSLRQKLGALA---DIVETVRGVGYRFRAENSEVIAE 235


>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
           43243]
          Length = 228

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           M+IL+++D+  +   +   L   N++V     GE+ +++  +  +   IILD+ +  + G
Sbjct: 8   MKILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPKMDG 67

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           +EV   +R      P+ +L+      D+++G + G D+YISKPF+ + L AR+ AI+RR 
Sbjct: 68  WEVCAEIRR-NSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRV 126

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A  +I  G + ++  A  V++ G +I L+ KE++++E     K   L++E  LN++
Sbjct: 127 YSKDAGEIIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++     + + ID  + KLRKK+        YI+T+WG GY   
Sbjct: 187 WNYDYFGDARTIDTHVKKLRKKMGEKG---EYIKTIWGMGYKFE 227


>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 227

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MRILL+ED+  L  +++  L  + + V     G +          E++  I+D  L  + 
Sbjct: 1   MRILLVEDEPDLGEALKKALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLPGMS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+++ LR  + S PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GIELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRALGRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-HRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S       +  GDL ++   +TV  QG   + LT KE+ ++E      N  LT E   N 
Sbjct: 121 SPQLVPQQLQRGDLILDYGTRTVFYQGNQTLSLTTKEFLLLEYFFNHPNQILTSEQIRNQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L++  +EP   ++   +  LR+KL      KN IETV G GY  
Sbjct: 181 LWEMGEEPMSNVVAAQVRLLRRKLETV-DCKNVIETVHGVGYRF 223


>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
          Length = 256

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 73/243 (30%), Positives = 121/243 (49%), Gaps = 9/243 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD  +   +   L+   F+V   + G  G  L   Y  D ++LDL L  + 
Sbjct: 1   MKPCILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   PV +L+ + S +DKV G  SGADDY++KPF+ EEL+ RI+A++
Sbjct: 61  GLTLCQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALL 120

Query: 117 RRSRGHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RRS           ++  G L++  +          + LT  E++++  L  R   T+  
Sbjct: 121 RRSDRAPLSTKHNEILNYGCLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAP 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            + L  ++    + +++ I V +  LR KL        +I+TV+G GY L   + D   E
Sbjct: 181 SLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPSGDHQEE 240

Query: 232 YLE 234
             +
Sbjct: 241 LAQ 243


>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
          Length = 222

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L++E F V     G +  ++ +  +    ++D+ + ++ GFE+
Sbjct: 1   ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +    PV +L+   ++ DK RG + G DDY++KPF  EELV RIRA++RRS   
Sbjct: 61  CQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSNQA 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++   
Sbjct: 121 SEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIWQRD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +   + +DV I +LR        G   I TV G GY L E 
Sbjct: 181 YDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYKLEET 221


>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
           protein [Arthrospira platensis str. Paraca]
          Length = 227

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L +S+   L  E + V     G     L + + +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+   LR  +  TP+  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  GDL  + + +        I L+ KE Q++E L       LT      
Sbjct: 121 ILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTEIHQ 180

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           HL+   D +P   ++   I  LR+K+    G    + TV+G+GY   E
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIE-LPGAVPLVHTVYGKGYRFGE 227


>gi|58337060|ref|YP_193645.1| response regulator [Lactobacillus acidophilus NCFM]
 gi|58254377|gb|AAV42614.1| response regulator [Lactobacillus acidophilus NCFM]
          Length = 240

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL++EDD ++A  + +  K E +   +   G + +++ +    ++D I LDL L    G 
Sbjct: 5   ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFRKNADKYDLITLDLNLPKKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR  
Sbjct: 65  QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124

Query: 121 GHAQSL----------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTL 169
              +            I T  L ++ + + V      + +LT KE+ ++  ++ +     
Sbjct: 125 MEEEPDTAKEDKQDYEITTKHLKISKNRREVLFDKQPVTNLTPKEFDLLYTMAQKPKQVF 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++E  L  ++      E + +D  I KLR+KL         I+TVWG GY   +
Sbjct: 185 SREQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDD 236


>gi|291009674|ref|ZP_06567647.1| two-component response regulator [Saccharopolyspora erythraea NRRL
           2338]
          Length = 223

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 69/219 (31%), Positives = 119/219 (54%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD ALA  + ++L+ E F   V   G   +   +  + D ++LDL L  + G +
Sbjct: 4   RVLVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCKAIRTESV-VPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL++++    V   G  I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V   +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVQ--RLRSKVERDPERPEVVLTVRGVGYK 219


>gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family
           [Acaryochloris marina MBIC11017]
          Length = 222

 Score =  255 bits (653), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 8/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+ ED+  +A  IE  LKS  F           + L    EFD +ILDLGL D  G E
Sbjct: 3   HILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGLPDRDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      P+ IL+    I+DK+ GL+ GADDY++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNIH 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            + S    +V  ++ ++L A+  +V    I L  +E+ + E         L+++  L+ +
Sbjct: 123 QSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   I+DV++  LRKKL +       I+TV G GY L
Sbjct: 183 WGYDYDPGSNIVDVYVGYLRKKLGDD-----LIQTVRGVGYRL 220


>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
 gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 109/220 (49%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+ + F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPTMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+      +KV+G + G DDY++KPF+  EL  R++A+++R R  
Sbjct: 64  CKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I  G ++++     V      I L  KE++++  L+       T+E  ++ ++   
Sbjct: 124 HSQTIQLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + IDV I +LR++ +       +I+T+ G GY L 
Sbjct: 184 YAGDNRTIDVHIKRLRERFNTITDF--HIDTIRGLGYRLE 221


>gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 245

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 125/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++DDK +   +E+  ++E +       G+D I       +   +ILDL + ++ G 
Sbjct: 18  KILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTMPDISLVILDLMMPEMNGM 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R +R    S P+ +LS  ++  DK++GL +GADDY++KPFN  E++AR+++++RRS 
Sbjct: 78  DVIRQVRKDS-SIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 136

Query: 121 GH----AQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++  G L +N D+  V  ++G +I LT  E+ ++ LL+   N   + +   
Sbjct: 137 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIF 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        K + V +  LR K+  A GG+  IETVWG GY + 
Sbjct: 197 ERVWQQESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGYKVE 243


>gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 249

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  LA  +   L +  F V     GEDG+ +     F A+ILD+ L  I G EV
Sbjct: 15  VLLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLPGIDGLEV 74

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            R ++     TP+ +L+      D++ GL+ GADDY+ KPF   EL+AR+RAI+RR    
Sbjct: 75  CRRMKARS-ETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G L ++  +   +V G    LT  ++Q++ +L+      L++E+ ++ L 
Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV I ++R ++ +       I TV G GYV 
Sbjct: 194 GETLEAFDRSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235


>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
 gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
           25976]
          Length = 229

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 124/229 (54%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+KA+   I L L  +N+ V   +  +  ++     +   I+LD  L    G +
Sbjct: 4   KILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLDE-KPKLILLDWMLPGRSGIQ 62

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ L+ ++ +T  P+ +L+  SS +D +  L +GADDY++KPF+ + L+ARI A++RR+
Sbjct: 63  FIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRT 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +I   DL ++ +AK V  Q   I L+  EY+++           ++E  L+ ++
Sbjct: 123 Y-QNNDVINIDDLILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 E + +D +I +LRK L    G + Y++TV G GY    + +D+
Sbjct: 182 GNDIYVEDRTVDSYIRRLRKSLEPC-GFERYVQTVRGSGYRFSNHFRDD 229


>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
           protein [Ruminococcus flavefaciens FD-1]
          Length = 228

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L+  I  ML+   +        E+  ++     F  I+LD+ L D  GFE
Sbjct: 5   RILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV   S  ++ +D++R    G DDY+ KP++ +EL++R+ A++RR+ G
Sbjct: 65  ICRQLRKVS-DVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAYG 123

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +  G + +N   +TV   G ++ L  +E+ ++  L   +NT + KE  L+ ++ 
Sbjct: 124 QTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E   + V I  LR+KL +      YI+TVW  GY+L  +
Sbjct: 184 AFSEVEPSTLTVHIRWLREKLEDDPASPKYIKTVWRLGYMLEVD 227


>gi|78776518|ref|YP_392833.1| two component transcriptional regulator [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497058|gb|ABB43598.1| two component transcriptional regulator, winged helix family
           [Sulfurimonas denitrificans DSM 1251]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ +A  I+  L+ E+++V VT  G + I L +   +D ++LDL +  + G 
Sbjct: 1   MRILVVEDDEKIASFIKKGLQEESYSVDVTSNGYEAIYLVETNSYDIVLLDLMIHGLGGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R   I+TP+ +L+   +I+DKV GL  GA+DY++KPF+ EEL+ARIR+ + R+ 
Sbjct: 61  DVCKNIRGKNIATPIIMLTARDAIKDKVEGLDCGANDYLTKPFSFEELLARIRSKL-RTT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I   DL++N   + V+    +I+LT KEY ++E L+      L++ +   +L D
Sbjct: 120 STLSSTIAIADLTINTARREVKRGDKKINLTAKEYALLEYLARNSKKLLSETIIKENLSD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +     I++V+I +LR K+         I TV G GY+L E
Sbjct: 180 MAEVSMSNIVNVYIYRLRNKIDKD-YEPKLIHTVRGLGYMLSE 221


>gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
          Length = 219

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++ D +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|262373013|ref|ZP_06066292.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313038|gb|EEY94123.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  +A  +   L    +       G +G+E  K   +  +ILD+ L D+ G+
Sbjct: 1   MCILIIEDETKIASYLVKGLIESGYTAECVHSGLEGLERLKMKSYSLVILDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR      PV  L+    I D+V+GL+ GADDY++KPF+  EL+AR+++++RR +
Sbjct: 61  DVLKILRQFS-KVPVIFLTAKDQILDRVKGLELGADDYLAKPFSYIELLARVKSLLRRQQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + ++      L ++L    V  +   I L+ KE+ ++  + L +N  +T+    + +++
Sbjct: 120 YNQENEFSIASLKMDLTQHKVWREDTLIDLSKKEFNLLRFMLLHQNEIITRRQIASEVWN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   IDV + +LR K+ +       I T+ G GY L   A
Sbjct: 180 INFDTDTNFIDVAVRRLRSKI-DDGHDLKLIHTIRGLGYKLSVQA 223


>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
 gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Persephonella marina EX-H1]
          Length = 228

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +   +   LK E F+V      ++     K    D I+LD+ L D+ G E 
Sbjct: 4   IYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLEF 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  K +   P+ +L+  S+  DK+ GL+ GADDY++KPF+  EL+ARI+A+++RS+
Sbjct: 64  CKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLKRSK 123

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I   DL ++     V + G  I LT KE++++ LL   +   LT++  L+ +
Sbjct: 124 RSFKKDKIIRIKDLEIDPLKIEVRIDGKNIDLTAKEFKLLLLLINAEGKVLTRDQILSSV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++   +   + IDV I KLR KL         I+TV G GY   
Sbjct: 184 WENDLDVFDRTIDVHIKKLRDKLGIYG---RCIKTVRGAGYKWE 224


>gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
 gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827]
          Length = 231

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 114/221 (51%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +   +   G++ I+  +  + D I+LDL L  + G  +
Sbjct: 11  VLVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLMLPGMDGLTI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +++  +   D++ GL+ GADDYI KPF+  E+VAR++ I+RR +  
Sbjct: 71  CRELRKF-CEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQRA 129

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A        L ++ +A  V      + LT  E+++++ +S    T  +++  L+ LYD  
Sbjct: 130 ASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRDQLLDILYDDH 189

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + ID  +  LR+KL      K +I +++G GY   E
Sbjct: 190 RIVTDRTIDSHVKNLRRKLELLDNEKTFIRSIYGLGYRWDE 230


>gi|126437133|ref|YP_001072824.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126236933|gb|ABO00334.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 248

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F   V   G D I + +  + D +ILDLGL  I G E
Sbjct: 16  RALVVDDELPLAEVVASYLEREQFEAVVAGNGVDAIAVARDLDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRI 134

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LS+++ A+ V +    I LT  E+ ++E LS R    L++
Sbjct: 135 LQTAAAPAERETAPPRRFGALSIDVAAREVHIDDELILLTRTEFDILEALSARPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + D        ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 195 RQLLEIIRDEPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 244


>gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
 gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5]
          Length = 225

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H ++  L      V      E+ +   + +  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL     G   I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-GPSGFKPIDTVRGLGYLFNE 222


>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
 gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
          Length = 227

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 11/227 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           L+EDD  + + +   LK E +   + D  EDG +L +    D  ILD+ L  + G+E  +
Sbjct: 7   LVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMDGYEFCK 66

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ I+S      DK+ GL+ G DDY++KPF+  EL+AR++ + +RS  H Q
Sbjct: 67  KIRNES-DVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKRSTSHRQ 125

Query: 125 SLIVTGDLSVN-----LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             I    + V+      + + V  +G     T KEY M+ LL+   N   ++E  L  ++
Sbjct: 126 DEIEEDRVKVDQLLVYKNERRVFFEGEEFETTTKEYDMLLLLAENPNRAFSREELLMKIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   + +D  I ++RKK+ N       +ETVWG GY LR++ +
Sbjct: 186 GNDYFGSDRAVDDLIKRIRKKMGNIP-----LETVWGFGYRLRKDEE 227


>gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 233

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 11/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ ED+ ++A +IE+ LKS+ +       G    E  +    D  I+D+ +  + G  +
Sbjct: 5   ILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVMMPVMDGIAL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R      P+ ILS  S   DK+ GL  GADDY++KPF   EL+AR+ A +RR    
Sbjct: 65  TMKIREL-YEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHLRY 123

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +   +  ++ G + ++  +K V V G    LT  E+++++L         + + 
Sbjct: 124 QQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFSSDD 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              H+++       + + V I  LR+K+        YI+ VWG GY + + 
Sbjct: 184 IYEHVWNET-AVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIEKQ 233


>gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 219

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDK++ + +E  L+ + + V   + G   +   K    + +ILD+ L +  G  +
Sbjct: 2   IYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEKDGITI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ +L+  +   DKV GL  GADDYI+KPF+  EL++R++A++RRS+  
Sbjct: 62  LKEIREFS-DIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSKKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   ++ +N+  ++V+V G +I LT KE++M+ L        +T++ FL  ++   
Sbjct: 121 DTDHISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL NA     YIETV   GY   E
Sbjct: 181 YEGETRTVDVHIASLRAKLKNAG---KYIETVRNLGYKFGE 218


>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 226

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +EL L    +       G + I+  + +  D ++LD+ + ++ G+E 
Sbjct: 4   LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++      D V+GL+ GADDY++KPF++ EL+ARI A++RR+ G 
Sbjct: 64  CRRIRSFS-NVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +S I    L  + +  TV  +   I LT KE+ ++ LL    N   ++   +  L+   
Sbjct: 122 GRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWGYL 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
            + E + +D  +  +R+KL  A      Y++TVWG GY   
Sbjct: 182 ADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222


>gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
 gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342]
 gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR
           [Klebsiella sp. 1_1_55]
          Length = 240

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   + + G+  +   +      I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLQAAGYAPTLINHGDKVLPYVRQTPPHLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+L     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 228

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    + +  + V+  ++TV V G  I +T  E++++      +   +++E  +  
Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL    G    I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLG---GKATCIVTVVRTGYKFE 225


>gi|317493853|ref|ZP_07952270.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918180|gb|EFV39522.1| heavy metal response regulator [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 226

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 133/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R AK  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +++V I +LR K+ +A      + TV G GYVL    +
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDVKLLHTVRGMGYVLEVRPE 226


>gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 121/220 (55%), Gaps = 8/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++A+   ++  L+   + V + + G D ++     ++D IILDL L  I G E
Sbjct: 3   KVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V + +R  KI+T + IL+      DK+ GL+ GADDY++KPF+  E+VAR++A+ RR   
Sbjct: 63  VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S   +++    G+  VNLD+  +     + I LT KE++++     +K   L +E 
Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIET 213
            LN+++      + +++D+ +  LR+K+        + + 
Sbjct: 183 LLNNVWGFDYIGQTRMVDMHVSHLREKIEENPKKPYFFKN 222


>gi|121534557|ref|ZP_01666379.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121306809|gb|EAX47729.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   I+ ML+ E   V     G   +E   +  +D +ILD  +  + G 
Sbjct: 1   MRILLAEDDSRLGKLIKHMLEKEKMQVDWVTEGNAALEYALYSPYDVVILDWMMPGLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  +    + +L+   +++DKV GL +GADDY+ KPF   EL+ARIRA+ RRS 
Sbjct: 61  EVCDRLRKRRYQGAILMLTARDAVDDKVLGLDTGADDYLVKPFEFSELMARIRALSRRSA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GDL +N   + V      I LTG+E+QM++LL   +   + +E+ L+ ++
Sbjct: 121 VVLKEDIVQVGDLVLNRTTRVVRRGDREIQLTGREFQMLDLLVQNRGKVVPREVILDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E     +D ++  LRKK+ +  G +  I  + G GY L E
Sbjct: 181 GLESEVSSNNLDAYVRLLRKKI-DFPGEEKLIHNIRGIGYKLGE 223


>gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
 gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein
           phoB
 gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti]
 gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
 gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti AK83]
 gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium meliloti BL225C]
          Length = 227

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 64  LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     +L+  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +   + I TV G GY L 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMPDVIRTVRGAGYSLE 226


>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 226

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 115/227 (50%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI--P 58
           MRIL++EDD  LA  +   L    +   V   G   +E  +   +D ++LDL L  I   
Sbjct: 1   MRILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGG 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV R +R      P+ +L+ + S+  KV GL +GADDY+ KPF+  EL+AR+RA++RR
Sbjct: 61  GMEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      ++    + ++   +T    G  I LT KEY ++E L       ++    ++H 
Sbjct: 121 APRADAPVLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHA 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +    ++  +I  LR KL+   G    IET  G GY++  + 
Sbjct: 181 WDTNYQGVSNVVQTYIRYLRVKLAE-PGLPEVIETRRGYGYLIAVDG 226


>gi|291534308|emb|CBL07420.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538051|emb|CBL11162.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 235

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +   IE+ LKS+N+NVY    G +G+E+ +  E    I+D+ +  + G  +
Sbjct: 6   ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGIEGLEIIESKEIHLAIVDIMMPRMDGVTM 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR      PV +LS  S   DKV GL  GADDY++KPF   EL+AR+ + +RR    
Sbjct: 66  TLKLREHH-DFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQIRRYTKF 124

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 +     + + G + +N D   V V G  + +T  E++++ LL        + + 
Sbjct: 125 NNKSQEKKENDRVHIIGGIELNEDTVEVFVDGKPVKMTPIEFKILALLMKNPGRVYSADE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +++         I V +  +R K+        Y++ VWG GY + +  
Sbjct: 185 IYERVWN-EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKMEKQP 235


>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
 gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
           [Rhodobacter sp. SW2]
          Length = 230

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+ A    +   L +E + V     GE+ ++L      D I+LD  +  + G EV
Sbjct: 9   VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWMMPKVSGLEV 68

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+RA +RR+R
Sbjct: 69  CRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRAR 128

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +  GD+ ++ +   V      + L   E++++     R     ++E  L+ ++
Sbjct: 129 PASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLDRIW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV + +LR+ L    GG + + TV G GY L
Sbjct: 189 GRDINVETRTVDVHVGRLRRAL-CVFGGDDPLRTVRGAGYAL 229


>gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9]
 gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
 gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response
           regulatory system with BaeS [Shigella sp. D9]
          Length = 240

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L  I G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGIDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|218680187|ref|ZP_03528084.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           etli CIAT 894]
          Length = 230

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V          +       D I+LDLGL D  G +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVQEAPNAASARQSVADGTPDLIVLDLGLPDTSGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V  L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWREEGLSVPVIILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  I L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGQEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V++ +LR+K+       +YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEKIPDQPHYITTETGVGYRLREP 229


>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
 gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC
           27560]
          Length = 228

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 114/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++EDDK ++   +  LK+  + V       D          D II+D+ L D  G  
Sbjct: 3   KIYILEDDKNISEIEQFALKNAGYEVSAFATASDFENALTKEHPDLIIMDIMLPDRDGLS 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VL+ +R  + +   PV +++  +S  DKV+GL  GADDY++KPF   EL++R++A++RR+
Sbjct: 63  VLKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALLRRA 122

Query: 120 RGHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                S I     ++++     V V G    LT KEYQ++++L       L +   L+ +
Sbjct: 123 NVSGGSHIYSFDGITMDDAKHQVLVDGQETELTYKEYQLLKMLIQNSGIVLQRSQILDRV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E E + +D+ I  LR+K+         I+TV   GY +
Sbjct: 183 WGIDYEGESRTLDMHIKTLRRKIGEKGS---LIQTVRNVGYTM 222


>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 236

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 11/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I + L    F +     G D IE+      D I+LDL L DI G E
Sbjct: 5   KLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGLE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R       TP+ +L+  S   DKV GL  GADDYI+KPF   EL AR+R ++RR 
Sbjct: 65  VCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRRV 124

Query: 120 RGHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         ++I   D++++++   V+ Q   I  T  E+++++ L+      L+
Sbjct: 125 MDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLEHVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + + L  +   +  P+++I+DV I  +RKKLS+      YIET+ G GY ++
Sbjct: 185 RSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKMK 236


>gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7]
 gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7]
          Length = 233

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L   N++  +     D     + Y  D I+LD  + D  G E
Sbjct: 7   KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGAE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D+V GL++GADDY+ KPF+  EL+ARI A++RR +G
Sbjct: 67  ACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRKKG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +  G  + +   + +      I LTG E  ++E L       L++E  L  
Sbjct: 127 ASALNKDQPVSFGPFTFDPATRQLSKDDETIKLTGGEVNLLEALINNSGKPLSRERLLAL 186

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D  + E   + ID+ I +LR+ + +      +I+TVWG GY    
Sbjct: 187 ARDDDEGERNDRAIDIAILRLRRAIEDDPKQPRWIQTVWGVGYRFSP 233


>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   ++  L  E + V     G   + L + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSRG 121
            R +R    + P+ +L+  S  +D + G + GADDY+ KP +   L+AR + ++  R   
Sbjct: 65  CRRIRKVS-NVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQMH 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G ++++L ++TV ++G    LT  EY+++  L   K   L++E  +  ++  
Sbjct: 124 EPGDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E + +   +  LR KL + A    +I TV   GY   E  
Sbjct: 184 DFIGEDRTLSSHVRNLRSKLGDHA---KHIVTVVRSGYKFEERP 224


>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
 gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
          Length = 225

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 121/223 (54%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L+ E   +     G + +++  +  +   IILD+ +  + G+
Sbjct: 5   KILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPRMDGW 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R +R      P+ +L+      D+++G + G D+YISKPF+ + LVAR+ AI++R R
Sbjct: 65  QVCREVRALS-QVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGR 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A + LI  G + ++  A  V++    I L+ KE++++      +   L++E  LN+++
Sbjct: 124 AAASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     + + ID  + KLR KL       NYI+T+WG GY   
Sbjct: 184 DYDYFGDARTIDTHVKKLRSKLGEKG---NYIKTIWGMGYKFE 223


>gi|56540659|gb|AAV92783.1| PmrA [Salmonella enterica]
          Length = 222

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 121/229 (52%), Gaps = 7/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+      + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             +EP    ++V I  LR K+  A      I TV G GY+L   A +E+
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLV--AAEES 222


>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
          Length = 249

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 20  KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 79  TLKELRQQ-YQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 137

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 138 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 197

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 198 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRRDGHPWFKTLRGRGYLMV 246


>gi|323494129|ref|ZP_08099245.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
 gi|323311756|gb|EGA64904.1| OmpR family two-component response regulator [Vibrio brasiliensis
           LMG 20546]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  +A  +    + +   +   D G DG+       +D I+LD+ L +  GF
Sbjct: 1   MKILLIEDDAHIARFLINGFQQQACTITHADNGVDGLHEAVTQAYDVIVLDIMLPEKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EVL  LR    +TPV ILS   S+E++V GLQSGADDY+ KPF   EL AR +++ RR  
Sbjct: 61  EVLAQLRGEGHTTPVIILSAKHSVEERVLGLQSGADDYLVKPFAFPELFARCQSLARRGK 120

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  AQS  +   +LS++L   T++  G  +HL  +E+ +I+L+     + +TK   L  +
Sbjct: 121 QNQAQSHTLSYSELSLDLFKHTLQRAGKTLHLNQREFMLIKLMMEHPESVITKTAILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  + +P+  ++DV +C+LR K+         I T+ G GYVL+
Sbjct: 181 WGHQFDPQTNVVDVLVCRLRGKVDKGFDTP-LIHTLRGVGYVLK 223


>gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 219

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   +   L    F +     GE+G        +DA+ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LRA R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G +++N D+ T    G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator
           [Kangiella koreensis DSM 16069]
 gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family
           [Kangiella koreensis DSM 16069]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 93/224 (41%), Positives = 138/224 (61%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD AL   +   LK++N+ V     GE+ + L + YEFD  I DLGL DI G 
Sbjct: 1   MKLLLVEDDDALREQLVSALKAQNYVVEEAPNGEEALYLAREYEFDLGIFDLGLPDISGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+ +LR   I  PV IL+     +DKV GL +GADDY+ KPF  EEL+ARI A++RR+ 
Sbjct: 61  DVITSLRDEDIQFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A+  IV G +S+N   + V+V G  + LT  EY+++E L L  +  ++K     HLY 
Sbjct: 121 GYAKPEIVKGPISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +  +++VF+ +LRKK+    G    I+T+ GRGY LR +
Sbjct: 181 QDYDRDSNVLEVFVGRLRKKIDPD-GTIQPIDTLRGRGYRLRAD 223


>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 232

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +  + +L L+   ++V   + G + IE  +    DA++LD+ L  + G  
Sbjct: 9   RILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVMLPGLDGIS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+ ++S      D V GL++GADDY++KPF+ + LVAR+RA++RR+  
Sbjct: 69  VCRRIRETSL-VPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRRAVS 127

Query: 122 HAQSLIV--------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +             GDL ++ +A  V   G  + LT  E +++   +      L++  
Sbjct: 128 DPERPAPTSGAGVESFGDLELDREALEVRRGGSTVQLTPTELKLLIEFANNPGVVLSRST 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 188 LLQRVWDYEWGGDGRLVDVHLQRLRTKIGAD-----RIETVRGFGYKLR 231


>gi|58040125|ref|YP_192089.1| cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
 gi|58002539|gb|AAW61433.1| Cell cycle transcriptional regulator CtrA [Gluconobacter oxydans
           621H]
          Length = 247

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 117/235 (49%), Positives = 169/235 (71%), Gaps = 4/235 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++ D++ A ++  +L++ +F V  T  GE+ IE+ + Y++D ++L+L L D+ G+
Sbjct: 1   MRILLVDSDQSAATTLSQILRTASFTVDHTPSGEEAIEMLRHYDYDVVVLELMLNDLEGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R A+I+TP+ +LS +   + K+R    GADDY++KP++  ELVAR++A++RRSR
Sbjct: 61  EVIRRARAARITTPILVLSALLRPQAKIRAFSMGADDYMTKPYDAGELVARLQAVMRRSR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+  +  G+L ++L+ K V V G  +HLTGKEY ++ELL +RK + LTK+ FLNHLY 
Sbjct: 121 GFAEPKLRVGNLELDLNGKNVTVDGAPLHLTGKEYAILELLVIRKGSVLTKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           G DEPE+KIIDVFICKLR+KL N   G N I TVWGRGY+LRE   D+T E   T
Sbjct: 181 GIDEPEMKIIDVFICKLRRKLQNVGAG-NLIATVWGRGYILRE---DDTAEIPVT 231


>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 232

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 10  MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232


>gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989]
 gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV
           [Escherichia coli 55989]
 gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 -TLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 229

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   +   L+   F         +          D I+LD  L    G +
Sbjct: 4   RILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTSGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R  R  +++   P+ +L+      D+V GL++G DDY+ KPF+  EL+ARIRA++RR+
Sbjct: 64  LARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRT 123

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   +   +  G L ++  A  V      + +   EY+++           T+   L+H+
Sbjct: 124 REDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G    E + IDV I +LRK L      +N ++TV G GY  
Sbjct: 184 WGGSVYVEERTIDVHIRRLRKTLEP-FDLENMVQTVRGSGYRF 225


>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
 gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
          Length = 249

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I + EDD  +A  I   L+ + ++V V+  G+  ++     +F  +ILD+ +  + G E
Sbjct: 26  KIGIAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDNDFQLLILDVMMPGMSGVE 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R+LR  +   P+ +L+ + SI+DKV GL SGADDY+ KPF+ +EL+ARI A++RR + 
Sbjct: 86  ICRSLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALLRRHKK 145

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A      L+   D+S++  +K V   G  I LT KEY ++EL     N  L+++     
Sbjct: 146 EAVVQEDHLLRFDDISLDTYSKEVSRAGQPISLTAKEYLLLELFLRNPNRLLSRQYIAER 205

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +    +IDV++  LR K+      +  I T  G GY+L+
Sbjct: 206 VWDVNFDTGTNVIDVYMNFLRNKIEK-GFDRKLIHTKIGMGYILK 249


>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
          Length = 226

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++A+   I   L+ E + V     GE   +L    + D I+LD+ +  + G +V
Sbjct: 5   ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLL-NRKPDLILLDIMMPGLDGIQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
            R +R   +S P+  LS    +ED++ GL  G DDYI+KPF+ EELVAR+ A +R   RS
Sbjct: 64  CRWIR-DSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRRELRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L ++L A  V      I +T KE+++I  L++      ++E     ++
Sbjct: 123 PDQEKTVLRFGRLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQVFSREQIYEGVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E     +   I K+R KL        YI TVWG GY   +
Sbjct: 183 GFG-EGSDATVTEHIKKIRAKLGAVDPVTPYISTVWGIGYRWEK 225


>gi|229106169|ref|ZP_04236718.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
 gi|228677245|gb|EEL31573.1| Two component transcriptional regulator, winged helix [Bacillus
           cereus Rock3-28]
          Length = 233

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++E+D  +   I L +K   FNV  TD GE  +EL +    D +ILD+ L  I GF V
Sbjct: 6   ILVLENDITIRSFITLNMKRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGIDGFRV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R       + IL+ +   +D+V GL  GADDYI KPF+  ELVAR+++++RR + +
Sbjct: 66  CKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRRIQKN 125

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   LI +G   +NL    +      I LT  E+ ++  L       +++   LN ++ 
Sbjct: 126 KKDLELIHSGPFQLNLLLGELYRNEIVIDLTPTEHIILRYLMENSMKPISRNELLNKIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K+IDV I +LR+K+  +     ++ TV G+GY   EN
Sbjct: 186 INCVGNTKVIDVNINRLRQKIETSPSNPEFLLTVRGKGYRWNEN 229


>gi|328944489|ref|ZP_08241951.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
 gi|327491073|gb|EGF22850.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829]
          Length = 246

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD ++     + LK+ N++V       D     K      I+LD+ L D  G  +
Sbjct: 15  IYVVEDDVSIQEIEIIALKNSNYDVQAFSCAADFFAALKTRTPQLILLDIMLPDADGNTI 74

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR        P+ +++  ++  D +RGL +GADDYI KPF+  EL++RIRA++RR++
Sbjct: 75  TRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRAQ 134

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             AQ      S+   G + ++     V V    ++LT KEY ++  L L +    T+E+ 
Sbjct: 135 TPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREVL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  ++    E E + +D+ I  LR+KL +A+    Y+ TV G GY ++ +
Sbjct: 195 MQAVWGFDFEGESRTVDMHIKTLRQKLGDASC---YVHTVRGVGYCVKSD 241


>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
 gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 118/222 (53%), Gaps = 8/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+KA+   +  +L    + V + + G +G+   +   F  I+LD+ +  I G+ V
Sbjct: 5   ILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKIDGYAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+ +L+ M   E +V+  +  ADDYI+KPF+ + ++ RI A++RR++  
Sbjct: 65  CEIIR-KNSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKEK 123

Query: 123 AQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++  +     + ++ +  TVEV G  I+LT  E+ ++E+    +N  LT++  +N ++ 
Sbjct: 124 VENHNIFISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + K +++ +  LR+KL         I+TV G GY   
Sbjct: 184 YDFTGDEKAVNIHVMNLRRKLDID-----CIQTVRGVGYKFE 220


>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
 gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|326790349|ref|YP_004308170.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326541113|gb|ADZ82972.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 234

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 110/231 (47%), Gaps = 10/231 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+++DD  +   +  +L+ E + V+ +  G + I+         +ILD+ +  + G 
Sbjct: 4   INILVVDDDLQIMEVLCKLLELEGYKVHSSFNGFEAIDYINNNSIQLVILDVMMPHLNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             L  +R    + P+ +LS  +   DKV GL  GADDYI KPFN  EL+AR++A +RR  
Sbjct: 64  TALLKIREKH-NVPIIMLSAKTEETDKVCGLSLGADDYIEKPFNTAELLARVKAQLRRYM 122

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         LI  GDL +N   K + V      LT  EY+++ELL    N   + 
Sbjct: 123 LLGASIENAAQTHDLIEVGDLVLNQATKEILVCDIPYALTATEYKILELLMKHPNQVFSA 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E    +++          + V I ++R+K+        Y++ VWG GY + 
Sbjct: 183 EQIYENVWQETVYAVENTVMVHIRRIREKIEMNPKEPKYLKVVWGIGYKIE 233


>gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 230

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD+A+A  +   L  E ++V V   G D +      EF  +ILDLGL ++ G E
Sbjct: 4   RVLLAEDDEAIASPLARALTREGYDVTVAATGTDAVRRALDEEFALLILDLGLPELDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A+    V +L+  +   D V GL +GADDY+ KPF   EL+AR RA++RRS  
Sbjct: 64  VCREVRAARPEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLRRSAP 123

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G + ++  A+ V V G  + L  KE++++  L  R    L++E  L  ++
Sbjct: 124 APDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDILADVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNA--AGGKNYIETVWGRGYVL 221
              D    K +D+ I  LR+K+ +     G   I TV G G+  
Sbjct: 184 GDSDLRGSKTLDMHISWLRRKIGDDTGPHGPRRIVTVRGVGFRF 227


>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 224

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
 gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
 gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V V   G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G+L +    + + V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|54296742|ref|YP_123111.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
 gi|296106303|ref|YP_003618003.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Legionella pneumophila
           2300/99 Alcoy]
 gi|53750527|emb|CAH11929.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
 gi|295648204|gb|ADG24051.1| two-component system, OmpR family, copper resistance phosphate
           regulon response regulator CusR [Legionella pneumophila
           2300/99 Alcoy]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F       G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+AR+++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KESPILLKINDLTLNLQKHTAIRGDKKLPLTAKEFMLLTFMLKRSGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV I +LR+K+ N    K  I TV G GYVL 
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVLE 221


>gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 221

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E FNV  +   +D +E     + D +ILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALEKL--NDTDLVILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LKE--ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ + G  + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E + +DV I +LR+KL +    K  I+TVWG GY L E  +
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSEEKE 221


>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
 gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
           10379]
          Length = 238

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D++ +   + + L+ E + V     G DG+E  K+ ++  ++LD+ L  + G  
Sbjct: 4   RILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLNGKS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR  K +TPV I+S  +  + +V G + GADDY+ KPF+  EL+ RI AI++R++ 
Sbjct: 64  ILSELRKTK-ATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQRTKR 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    A+ ++V   L +++++  V V    + LT KE+ ++  L+   +    +  
Sbjct: 123 SVFYTPELYAKDVLVFPGLIIDVNSHKVIVDDTEVLLTPKEFDLLLFLAKSPDKAFKRNE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  ++D     +++ +D  I ++RKK    +      I TVWG GY  
Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPIVAQMIVTVWGIGYKF 231


>gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 226

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ +   +   L    + V     G     L +   +D  ILD+ L DI GF
Sbjct: 1   MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  KI TPV ILS +   +DK++ L  GADDY++KP +  EL++RI A+ RR  
Sbjct: 61  QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H    +++V  DL VNLD   V+  G  I L+ KE++ +  L   +N  LT+   L  +
Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +    ++DV+I  LR K+      K  I TV G GY++
Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDK-LIRTVKGTGYMI 222


>gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6
           str. E2348/69]
 gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
 gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system
           with YedV [Escherichia coli O127:H6 str. E2348/69]
 gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75]
          Length = 223

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
           Et1/99]
 gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
          Length = 233

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/233 (33%), Positives = 119/233 (51%), Gaps = 11/233 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q      +         L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQQHQHDNSSPTLEVDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   R  P  + ID+ I  LR+KL        + +T+ GRGY++   A
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDAHPWFKTLRGRGYLMVSAA 233


>gi|187928978|ref|YP_001899465.1| osmolarity response regulator [Ralstonia pickettii 12J]
 gi|241663165|ref|YP_002981525.1| osmolarity response regulator [Ralstonia pickettii 12D]
 gi|309782634|ref|ZP_07677356.1| transcriptional regulatory protein OmpR [Ralstonia sp. 5_7_47FAA]
 gi|187725868|gb|ACD27033.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240865192|gb|ACS62853.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
 gi|308918609|gb|EFP64284.1| transcriptional regulatory protein OmpR [Ralstonia sp. 5_7_47FAA]
          Length = 240

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + F V V +      +L     FD ++LDL +    G  + R LR A   TP+ +L+  
Sbjct: 27  EQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAK 86

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +          GD  
Sbjct: 87  GEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRRGPAEIPGAPSETPETFAFGDFV 146

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T++     I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 147 LNLATRTLKKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQ 206

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +   A    +I+TVWG GYV   + 
Sbjct: 207 ISRLRKLIEPDASNPRFIQTVWGLGYVFIPDG 238


>gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902]
 gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family
           [Synechococcus sp. CC9902]
          Length = 259

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS        +   ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPLGASNQNEILSYGPLTLVPERFEAIWFDSPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli
           E24377A]
 gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC
           3083-94]
 gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11]
 gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1]
 gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989]
 gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A]
 gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94]
 gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019]
 gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012]
 gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11]
 gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli 55989]
 gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Escherichia coli IAI1]
 gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O26:H11 str. 11368]
 gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory
           system with BaeS [Escherichia coli O111:H- str. 11128]
 gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS
           84-1]
 gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS
           124-1]
 gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS
           85-1]
 gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905]
 gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14]
 gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68]
 gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180]
 gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718]
 gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271]
 gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591]
 gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299]
 gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae
           155-74]
          Length = 240

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
 gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
          Length = 230

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K++A ++    K E + V     GE+ +E  K ++ D +ILD+ +  + G+E
Sbjct: 4   KILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLTGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +    + +L+  + I DKV GL+ GADDY++KPF+  ELVAR +A+VRR   
Sbjct: 64  VCRKL-ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  G + VNL  +T+ V    + LT KE+ +I LL        T+E  L+ 
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++        + +D+ + +LRKK+  A      ++TV+G GY 
Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEA--EPYLLQTVYGVGYK 223


>gi|226323728|ref|ZP_03799246.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
 gi|225207912|gb|EEG90266.1| hypothetical protein COPCOM_01503 [Coprococcus comes ATCC 27758]
          Length = 228

 Score =  255 bits (653), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A+   +E ++ S        + G D + + K + FD I++D+ L D+ GFE
Sbjct: 4   KILIVDDDPAICKLLEKVMHSNELETTTVNCGMDALSILKNHTFDLILMDIMLGDMEGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   ISTPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKRLRNQGISTPVMIVSGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G  S +         G  + L+ KE  ++ L         TK+M   H+
Sbjct: 124 LVLDNSDTLECGPFSYDTTTMRFYKNGEELILSSKESALLLLFMKHPQQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +   I V+I +LR K+ +      YI T+ G GY    
Sbjct: 184 WGNTVAVDDNAIMVYINRLRGKIEDDRQNPAYILTIRGLGYRFVP 228


>gi|256396504|ref|YP_003118068.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362730|gb|ACU76227.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 119/230 (51%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L    + V +   G   +E       DA++LD+ +  + G 
Sbjct: 1   MHILVVDDDQAVRDSLRRSLAFNGYEVELAADGLAALEAIAKRRPDAVVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R LR A    PV +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR++
Sbjct: 61  ETCRRLRSAGEDLPVLLLTARDAVPDRVAGLDAGADDYLPKPFALEELLARLRALLRRTQ 120

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           G     + + +   DL+++   + V   G  + LT  E+ ++ELL       LT+   L 
Sbjct: 121 GSLADQSDAPLAFADLTLDPATREVTRAGKPVRLTRTEFNLLELLMRHPRQVLTRAQILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V++  LR+K          I TV G GY LRE A 
Sbjct: 181 EVWGYDFPTTANSLEVYVGYLRRKTEAD-ELPRLIHTVRGVGYSLRETAP 229


>gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
 gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium
           TW-7]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 8/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+I+DD  L   +   L S+ F +     GE G++L +  ++  I+LD+ L  I GF
Sbjct: 1   MKLLMIDDDTGLCELLSEYLSSQGFEIQSVHDGEQGLKLAQANDYALILLDVMLPTIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K+ TPV +L+      D++ GL+ GADDYI KPFN  EL+AR++AI RR  
Sbjct: 61  EVLKQLRQTKL-TPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIE 119

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +  + ++   +++NL A+   +  + + LTG EY+++ LL    +  ++KE  
Sbjct: 120 HINSLNINTTNKLLVNGVTINLAAREASIDENTLTLTGTEYEILALLCKNASQVVSKEQI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   R     + ID+ +  +RKK++     +  I+T+ G GYV 
Sbjct: 180 SEEVLGRRLASFDRSIDMHVSNIRKKIAEHIKTER-IKTMRGSGYVF 225


>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
 gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
           carboxidivorans P7]
          Length = 227

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++  L+ +++ V+V   G + +E  K    D I+LD+ +    G+E
Sbjct: 4   KILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAK-LNPDLILLDVMMPGKNGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   ++ P+  L+  S  ED + GL  G DDYISKPF+  +L ARI A +RR + 
Sbjct: 63  VCREIRDI-VNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRRDQR 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   +L+++L  +T+   G  I LT KE+ +IELL++      +KE     
Sbjct: 122 SFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKEQIYEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    E +   +   I K+R KL      + YI TVWG GY   +
Sbjct: 182 IWGYDAEGDSATVAEHIKKIRYKLKKYDKDREYISTVWGVGYKWEK 227


>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
 gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
          Length = 219

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 134/223 (60%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+++ I++ L +  +       G +  +      FD I+LD+ L +I G+E
Sbjct: 3   RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R   +  PV  L+  ++ EDKV+GL++GADDY++KPF   EL+AR+  ++RR + 
Sbjct: 63  LMDYIR--PLEIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQK 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S +  GDL +++ A+ V+ QG  ++LT KEY+++ LL   KN  L ++     ++  
Sbjct: 121 -TESRLKEGDLEIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWGS 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + + +D+ + +LRKK+    G ++ I+TV+  GY L ++
Sbjct: 180 GYMGDSRTVDLHVQRLRKKI----GWEHKIKTVYKVGYRLEDS 218


>gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei]
          Length = 222

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/215 (32%), Positives = 120/215 (55%), Gaps = 5/215 (2%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L    + V     G+      K   F+ IILDLGL  + G   L+ +R    +
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGDAARAAVKSESFELIILDLGLPKLSGLSFLQTIRHEGNT 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV IL+   ++ED+++GL SGADDY++KPF+  EL AR+RA+VRRS+G A S++   ++
Sbjct: 73  TPVIILTARETVEDRIKGLDSGADDYMTKPFDLNELSARVRALVRRSQGRADSVLQYRNV 132

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           +++  A +V V    I++  +E+ +++ L       L++E  +  +Y   ++ +   ++V
Sbjct: 133 TLDPAAHSVYVDDVMINVPRREFALLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEV 192

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            I  LRKKL       N+I T+ G GY+  +N  +
Sbjct: 193 HIHNLRKKL-----NANFIRTIRGVGYMAEKNESN 222


>gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1]
 gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1]
          Length = 220

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA  +   L +  + V   D G D   +      DA++LDLGL  + G 
Sbjct: 1   MHILVVEDEPTLAAQLVEALAAAGYAVDRADNGRDAHFIGDVEPLDAVVLDLGLPLMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A  + PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR+ 
Sbjct: 61  TVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARLRALIRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++  A  V V G  ++LT  E ++++ L   +   +++     H+Y 
Sbjct: 121 GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLDYLMHHQGEIVSRSDLTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   I+VFI +LRKKL     G   IETV G GY +   A
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL---PAG--MIETVRGLGYRMVCPA 220


>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
 gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +   ++L L S N+ +   + G+D  +  +  + D  ILDL L  + G++
Sbjct: 3   RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L+ +R        PV ILS      DK+ GL  GADDY++KPF+  EL ARIR+++RRS
Sbjct: 63  ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + LI    L ++LD + V ++   + LT KE+++++ L+  +   +++E  +N ++
Sbjct: 123 KKD-ERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E + +DV I  LRKKL N      +I++V   GY L     D
Sbjct: 182 GYDFIGESRTLDVHINSLRKKLGNEYAH--WIQSVRQVGYRLVSGDND 227


>gi|188532493|ref|YP_001906290.1| DNA-binding transcriptional regulator BasR [Erwinia tasmaniensis
           Et1/99]
 gi|188027535|emb|CAO95382.1| Two-component system response regulator [Erwinia tasmaniensis
           Et1/99]
          Length = 220

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L L  E + V        G    +  ++  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDALLQQGLSLALSGEGYAVDCAANAAQGAAFLQSGQYSLVVLDLGLPDRDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R  +   PV IL+   ++ D+V GL +GADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  HLLRQWRKEQQDLPVLILTARDALSDRVDGLDAGADDYLIKPFALAELKARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+  GD+S+NL ++ V V    + +T KE+ ++  L +R   T+ +E     LY 
Sbjct: 121 GKSDNLLQHGDISLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +D+     ++V I  LR+KL     GK  I+TV G GY L E  
Sbjct: 181 WQDDTSSNTLEVHIHNLRRKL-----GKERIKTVRGVGYRLEERP 220


>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
 gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
 gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 224

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|329930448|ref|ZP_08283988.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
 gi|328934826|gb|EGG31316.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Paenibacillus sp. HGF5]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 115/225 (51%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +E  L+ E F++     G + +   +  +   ++LD  L ++ G EV
Sbjct: 5   LLLVDDERKVIEFMEPFLRQEGFHIITAATGTEALAKARDAKPALVVLDWMLPELSGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +     + +++      DK+ GL+ GADDY++KPF+  EL ARIR+++RR  G 
Sbjct: 65  CRELRKSS-RVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEGE 123

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  + ++  GDL+++     V      I LT  E++++  L+ R     ++   L    +
Sbjct: 124 SVTEEMLKRGDLTISETQCRVWKHDREILLTPTEFKLLLTLASRPGVVYSRLQLLQAAME 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + +  D  I ++RKK+        +I+TV+G GY   +  
Sbjct: 184 DDIHNDERTADAHISRIRKKIEEDPAEPVFIKTVYGFGYRFEQQP 228


>gi|311693637|gb|ADP96510.1| two component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 245

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L+S    V +   G   +E  +  + D ++LDL L    G  
Sbjct: 12  RILIVEDDERLAELTREYLESNGLTVSLETHGGAAVERIRNEQPDLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    S P+ +L+  +   D+V GL+ GADDYI KP     L+ARIRA++RR   
Sbjct: 72  ICRRVRPF-FSGPIIMLTARTDDLDQVLGLEMGADDYIGKPVKPRVLLARIRAMLRRVTE 130

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   + G     +   DL V+   +   +    I LT  E+ ++ LL+      L+
Sbjct: 131 TGSGSADEAGGEEPVRLQFNDLVVDRSMREAWLSEESIDLTSAEFDLLWLLASNAGRVLS 190

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + A
Sbjct: 191 REEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLFVKEA 245


>gi|282900319|ref|ZP_06308270.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194824|gb|EFA69770.1| hypothetical protein CRC_02195 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           M IL++EDD  L  S+   L  E + V     GE      +      +D II+D+ L  +
Sbjct: 1   MWILVVEDDYYLTESLTEALTMERYEVECVRDGEAAWRRLQDLSVINYDLIIMDITLPKL 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  + + LR    + P+ +L+   +I DK+ GL +GAD Y+ KPFN +EL+A++RA++R
Sbjct: 61  DGIRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +    + +  GDLS++     V      IHLT KE+ ++E L        T+ + ++ 
Sbjct: 121 RGKPVTNNTLTWGDLSLDFSTYKVLYGKKPIHLTPKEFALMEALLRCNGRIATRSILIDQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++   + PE + I  +I  LR KL N    KN IET+ G GY L+
Sbjct: 181 IWAWENPPEEETIKTYIRNLRAKLINVGAPKNLIETIHGVGYRLK 225


>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
 gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
          Length = 225

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +EL L  E + V     G  G++     +FD ++LD+ L  + G E
Sbjct: 4   KILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLNGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R   +  PV +L+   ++ DKV GL +GADDY++KPF  EEL+ARIR  ++R   
Sbjct: 64  VLRRIRKESV-VPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRGT 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I    + ++ D   V V G  + LT +E++++  L   K+  + +E  L+ + 
Sbjct: 123 VEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAVC 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 E  IIDV++  LR K+ +  G K  I TV G GYV+RE
Sbjct: 183 GYDYLGETNIIDVYVRYLRTKIDDRFGVK-LITTVRGVGYVIRE 225


>gi|170720379|ref|YP_001748067.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758382|gb|ACA71698.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 232

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++  F+V V   G          + D +ILDL L    G  
Sbjct: 7   RILIVEDDQRLAELTAEYLQANGFDVAVEGDGARAARRIVDSQPDMVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRRVRGQ-YAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSEP 125

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G LS++   +   +    I LTG E+ ++ LL+      L++E     L 
Sbjct: 126 AQGKTQELAFGALSIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLSREQIFTALR 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + + + IDV I K+R K+ +       I+T+  +GY+   +A 
Sbjct: 186 GVGYDGQDRSIDVRISKIRPKIGDDPIHPRLIKTLRSKGYLFVGDAP 232


>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
 gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
          Length = 237

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 117/231 (50%), Gaps = 16/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGVS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR   
Sbjct: 72  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 130

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A   +  GDL V+ +   V  +G RI LT  E +++   S    T L++
Sbjct: 131 AGGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLSR 190

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 191 DQLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 236


>gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
 gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32]
          Length = 224

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +   L+   + V   + G+ G+ +    E+  +ILD  L  + G 
Sbjct: 1   MKILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A++  + + PV ILS M S+ED+V GLQ+G+DDY+ KPF   ELVAR+  I+ R++
Sbjct: 61  KVLSAIKATEENLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ ++   L ++L A  V  +   + L  KE+Q+I+         +++      +
Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL  A G  + + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEEA-GCPDLLHTVRGAGYVLR 223


>gi|104780529|ref|YP_607027.1| DNA-binding response regulator [Pseudomonas entomophila L48]
 gi|95109516|emb|CAK14217.1| putative DNA-binding response regulator [Pseudomonas entomophila
           L48]
          Length = 231

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 110/226 (48%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++  F V V   G          + D +ILDL L    G  
Sbjct: 7   RILIVEDDQRLAELTAEYLQANGFEVAVEGDGGRAARRIIDSQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R    + P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI A++RRS  
Sbjct: 67  ICRRVRGQ-YAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARITALLRRSEA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G L ++   +   + G  I LTG E+ ++ LL+      L++E     L  
Sbjct: 126 PERRQDLTFGPLHIDSRQREARLGGQLIELTGAEFDLLWLLASNAGRVLSREEIFTSLRG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + + + IDV I K+R K+ +       I+T+  +GY+    A 
Sbjct: 186 VGYDGQDRSIDVRISKIRPKIGDDPITPRLIKTLRSKGYLFVGEAP 231


>gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166]
          Length = 227

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    F V     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R +    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 ATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +I+V I +LR K+ +       I T  G GY+L E 
Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKI-DDGFEPKLIHTARGMGYMLDEP 224


>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++++ED+  +A  I   L +  F V     G++G+   +     A++LD+GL D+ G ++
Sbjct: 18  VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGLPDMDGLDL 77

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  ++      D++ GL+ G DDY+ KPFN  ELVAR+RA++RR+ G 
Sbjct: 78  CRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRRTGGP 137

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQ-------GHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A    + +  G + ++   + V V+          + LT  E+ ++  L+        + 
Sbjct: 138 AAAGGTTLQVGRVRIDPGRRRVWVEPGPGEPAPRPVDLTATEFDLLVHLARHPGRVFERA 197

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+ ++        + +DV +  LR KL  A+     I TV G GY
Sbjct: 198 GLLSSVWGYASAAGARTVDVHVAALRAKLGTAS----PIRTVRGVGY 240


>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
 gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
          Length = 229

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+K +  ++++ LK+  +N+Y    G++ +E  K ++   +++D+ + ++ G   
Sbjct: 4   ILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDGITA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R    + PV +L+  S   DK+ GL+ GADDYI+KPFN  E++AR+++ +RR    
Sbjct: 64  MLKIREE-TNLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRRYMQL 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    +  IV G + +N ++K V V G  + LT  EY ++ LL        +       
Sbjct: 123 GSGQIKKDAIVIGGIELNDNSKQVTVDGKLVSLTPTEYDILRLLMEHPGQVFSPRDIYKE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++          + V I  LR+K+    G   YI+ +WGRGY + 
Sbjct: 183 VWKETPLGAEGSVAVHIRHLREKIEINPGEPRYIKVIWGRGYKME 227


>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
           [Bordetella avium 197N]
 gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
           [Bordetella avium 197N]
          Length = 223

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+   A  +   L    + V V   G       +   FD ++LD+ L  + G+E
Sbjct: 2   RILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGWE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R  + STPV  LS   S++D+V+GL+ G DDY+ KPF+  EL+AR+R+++RR   
Sbjct: 62  VLRVIRR-RASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPV 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q ++  GDL + +    V   G  I LT KE+ ++ LL  R+   LT+ M  +H++  
Sbjct: 121 QCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVWLM 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +  ++DV I +LR K+ +       I TV G GY L
Sbjct: 181 NFDCDTNVVDVAIRRLRMKI-DEPYPDRLIHTVRGMGYRL 219


>gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 225

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 91/224 (40%), Positives = 135/224 (60%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L+ ++   LK  N+ V V   G  G ++ +   ++ IILD  L    G 
Sbjct: 1   MKILLVEDEVRLSEALVHTLKKNNYIVDVAFDGITGQQMAETNMYNVIILDRMLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VLR LR   ++TPV IL+   S++++V GL SGADDY++KPF+K EL+ARIRA+ RR S
Sbjct: 61  DVLRDLRKQGVTTPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGRRQS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  G++S N     ++V G  I LT KE Q++E+L   KN  ++KE  L  ++
Sbjct: 121 EIFVNEEINIGNMSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + E+  I+V++  LRKKLS    G   IET+  RGY L+E
Sbjct: 181 GFQTDIELNNIEVYLSYLRKKLSKLDCG-IVIETIRARGYCLKE 223


>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 233

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 114/234 (48%), Gaps = 19/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G++  +    D  +LD+ L  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVMLPGMDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   L+ARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRRFGH 123

Query: 122 HAQSL-------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                             +  GDL V+ +   V   G  + LT  E +++   S    T 
Sbjct: 124 AGGPGAGEHGEETPDGGLLAFGDLEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 184 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLK 232


>gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 219

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL EDD  L       LK E + V   + GE  IE     + D +ILD+ +  + G++
Sbjct: 4   KILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLDGWD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  + + P+ +L+     +D ++G +   D+Y++KP + + L+A+++A++RR   
Sbjct: 64  VCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR--N 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  S+I  G L +N  +  V + G  + L+ +EY+M+    + K   L++E  +  L+  
Sbjct: 122 NNDSIINMGKLIINDSSHVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + +D  I ++RKKL     G  YIETV G GY   
Sbjct: 182 DYEGDRRAVDSQIKRIRKKL-----GGEYIETVRGVGYKFE 217


>gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator
           [Caulobacter segnis ATCC 21756]
 gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family
           [Caulobacter segnis ATCC 21756]
          Length = 225

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/230 (38%), Positives = 128/230 (55%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++L L    + V     GE+   L +   +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   I+TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VFI +LRKKL     G   IETV G GY L     ++  
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKL-----GAERIETVRGLGYRLAPLPGEDAA 225


>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYTS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  + +  + V+  ++TV +    I+LT  E++++      +   +++E  +N 
Sbjct: 124 TVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGQKATC---IVTVVRTGYKFE 225


>gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 233

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56
           M+  +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  
Sbjct: 1   MKSTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +
Sbjct: 61  LDGFSVLRKIRQSN-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVAL 119

Query: 117 R--RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  R      ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  
Sbjct: 120 RHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+ ++    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N 
Sbjct: 180 LDAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANV 230


>gi|218534663|ref|YP_002424425.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
 gi|218473132|emb|CAQ76560.1| two component heavy metal response transcriptional regulator
           [Yersinia pseudotuberculosis]
          Length = 226

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 134/228 (58%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  +   L    F V V+  G +G+     +++DAIILD+ L  + G+
Sbjct: 1   MRLLLVEDEEKTSTYLNRALSESGFTVDVSADGAEGLHYALEFDYDAIILDVMLPGMDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R AK  TPV +LS   S++++V+GL+ GADDY+ KPF+  ELVARI+A+VRR  
Sbjct: 61  RVLEGVRAAK-QTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRA 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 TDGADITQLQIHDLHLDLLARRVFRAGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   + +  +++V I +LR K+ +A      + TV G GYVL   ++
Sbjct: 180 WDMNFDSDANVVEVAIKRLRAKV-DAPFDIKLLHTVRGMGYVLEVRSE 226


>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
 gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
          Length = 235

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +  ++ + LK++ + VY    G++G+E+   +E    I+D+ +  + G  +
Sbjct: 5   ILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR  K   P+  LS  S   DK+ GL  G DDY++KPF   ELVAR+   +RR    
Sbjct: 65  TMKLRQ-KYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQI 123

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     +AQ  +V G L ++   K V      + LT KE+Q++ELL        + 
Sbjct: 124 IKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYSA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E     ++   +    + I V I KLR+K+        Y++ VWG GY + +
Sbjct: 184 EEIYQAVWK-EEAINTETIMVHIRKLREKIEINPKKPEYLKVVWGIGYKIEK 234


>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
 gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
           27755]
          Length = 257

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 34/251 (13%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   I ++L  E F V   + G   + L +  +FD IILD+ +    G++ 
Sbjct: 6   ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGPNGYQT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R    + P+  LS  +   DK  G  SG DDY++KPF+  EL++R +A++RR +  
Sbjct: 66  CRKIRELS-NAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRYQVY 124

Query: 121 ------------------------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHL 150
                                              +++  DL +N   + V   G  + L
Sbjct: 125 KGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQLLDL 184

Query: 151 TGKEYQMIELLSLRKNTTLTKEMFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKN 209
           T  EY M+ELL   ++ T + +     ++ +         + V I  LR K+ +  G   
Sbjct: 185 TETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHPGNPE 244

Query: 210 YIETVWGRGYV 220
            I+TVWG+GY 
Sbjct: 245 LIKTVWGKGYR 255


>gi|54301942|ref|YP_131935.1| DNA-binding response regulator [Photobacterium profundum SS9]
 gi|46915362|emb|CAG22135.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum SS9]
          Length = 225

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      I   L+   F V     G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKILVIEDDLTTREFIAKGLREHGFVVDEAGDGHQGLMMATSCEYQLIILDRMLPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR + +V+R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +  +  DL +++ +  V      ++L  KE+ +++ L       +++      +
Sbjct: 121 SSTKVVTEYIYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLMEHAENVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G    I T+ G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEEN-GELGLIHTIRGAGYVLR 223


>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 222

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  + G 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GMANQPTLESAGLNLDESRQCVSRDGVDVQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL     G+  +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKL-----GRTVLETRRGQGYL 216


>gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 231

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +++ L+   F++     GE+ +++    +    ILD+ L  I G+E
Sbjct: 4   KILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGISGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R       + ++S  S   DK+ GL+ G DDYI KPFN +EL+ R+R+++RR   
Sbjct: 64  VCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRRVNF 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    +LI  G   ++L A+        I +T  E+ +++   L K   +++   
Sbjct: 124 TDDEKKEKNNNLIEDGIFKLDLYARNFFKNNKEIDVTPTEFIILKNFILNKGKAMSRMEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+        YIETVWG GY  R
Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPAKPEYIETVWGTGYRWR 231


>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
 gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
          Length = 225

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           ++IL+++D+  +   ++  L  + + V   + GE+ +++     +   I+LD+ +  + G
Sbjct: 4   IKILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FEVL A+R      PV +L+  S   D++ G + G D+YI+KPF+ + LVAR+ A++RR+
Sbjct: 64  FEVLEAIRQ-YSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRT 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +  +V G + V+  A++V +    + L+ KEY+++      K   L++E  L+ ++
Sbjct: 123 VGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILSSVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + ID  + KLR K+       +YI+TVWG GY   
Sbjct: 183 NYDYFGDARTIDTHVKKLRAKMGERG---DYIKTVWGMGYKFE 222


>gi|310779378|ref|YP_003967711.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309748701|gb|ADO83363.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 230

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++DD  + + I+ +L+ EN +  V   G++   L     FD IILD+ L D 
Sbjct: 1   MKSHEILIVDDDIKICNLIKEVLEPENISTTVATTGKEAQSLLISKTFDLIILDIMLEDT 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GF+++R ++V KI TP+  L+G     DK+     GADDYI+KPF+   L+AR++A +R
Sbjct: 61  DGFQLMRNIQVEKIDTPIIFLTGKQQDYDKILAFGMGADDYITKPFSVSVLIARVKAHLR 120

Query: 118 RSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           R     +       +V     +NLD   +   G  I L+ KE ++++      N   TK+
Sbjct: 121 RGDRVKELQLSSKKLVKEPFILNLDTYQLFKNGKEIFLSAKEIKIMKFFMENPNIIFTKD 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +++     +   + V+I  LRKK+ +      Y++T WG GY  
Sbjct: 181 QLYEKIWN-DVFIDNNSVRVYILNLRKKIEDNPQKPKYLKTAWGIGYKF 228


>gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei
           str. Zhang]
 gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei str. Zhang]
          Length = 233

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56
           M+  +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  
Sbjct: 1   MKSTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +
Sbjct: 61  LDGFSVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVAL 119

Query: 117 R--RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  R      ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  
Sbjct: 120 RHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+ ++    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N 
Sbjct: 180 LDAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANV 230


>gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 262

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E +     + GE+ +     +  D ++LDL L D+ GF 
Sbjct: 38  RLLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLMLPDLDGFG 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV  L+   ++ D+V GL  G DDY+ KPF  EEL+AR+R ++RRS G
Sbjct: 98  VLDRLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSAG 157

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S++   DL+++ D + V      + LT  EY+++  L  +  T LTK   L+H++
Sbjct: 158 PGFQRSVLRVADLTMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHVW 217

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        ++++ + +LR+KL +   G+  I TV G GYV+R+ A+
Sbjct: 218 EYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVVRQAAE 262


>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
 gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
           proteobacterium HIMB114]
          Length = 226

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++ L+ED++++   +E  LK E F   V+  GE+ +   K  E D ++LD  L D+ G +
Sbjct: 4   KVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLSGID 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R+L+  K     P+ +L+     EDKV  L +GADDYI+KPF   ELVARI A++RRS
Sbjct: 64  ICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALLRRS 123

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   A+   V  DL ++   + V     +I L   EY+M++          +++  L ++
Sbjct: 124 KPRVAEDKAVYEDLVIDRIQRKVFRNETQIDLGPTEYRMLDFFIKNPKRVYSRDQLLTNI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK ++   G K  I TV   GY L
Sbjct: 184 WPDNINVENRTVDVHIRRLRKAINLD-GTKELIRTVRSAGYSL 225


>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 228

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL  +   K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPSGYQKD-IQTVRGIGYILKEQ 228


>gi|17546367|ref|NP_519769.1| osmolarity response regulator [Ralstonia solanacearum GMI1000]
 gi|83745902|ref|ZP_00942959.1| RisA [Ralstonia solanacearum UW551]
 gi|207724183|ref|YP_002254581.1| oxidative stress resistance two-component response regulator
           protein [Ralstonia solanacearum MolK2]
 gi|207743038|ref|YP_002259430.1| oxidative stress resistance two-component response regulator
           protein [Ralstonia solanacearum IPO1609]
 gi|300691392|ref|YP_003752387.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Ralstonia solanacearum PSI07]
 gi|300703961|ref|YP_003745563.1| response regulator in two-component regulatory system with envz,
           regulates ompf and ompc expression (ompr family)
           [Ralstonia solanacearum CFBP2957]
 gi|17428664|emb|CAD15350.1| probable oxidative stress resistance two-component response
           regulator transcription regulator protein [Ralstonia
           solanacearum GMI1000]
 gi|83727592|gb|EAP74713.1| RisA [Ralstonia solanacearum UW551]
 gi|206589393|emb|CAQ36355.1| oxidative stress resistance two-component response regulator
           protein [Ralstonia solanacearum MolK2]
 gi|206594435|emb|CAQ61362.1| oxidative stress resistance two-component response regulator
           protein [Ralstonia solanacearum IPO1609]
 gi|299071624|emb|CBJ42948.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Ralstonia solanacearum CFBP2957]
 gi|299078452|emb|CBJ51104.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Ralstonia solanacearum PSI07]
          Length = 240

 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + F V V +      +L     FD ++LDL +    G  + R LR A   TP+ +L+  
Sbjct: 27  EQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGANDQTPIIMLTAK 86

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +          GD  
Sbjct: 87  GEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRRGPAEIPGAPSETPETFAFGDFV 146

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T++     I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 147 LNLATRTLKKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQ 206

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +   A    +I+TVWG GYV   + 
Sbjct: 207 ISRLRKLIEPDASNPRFIQTVWGLGYVFIPDG 238


>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 232

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +      E + V     G++G+++ K   F  I+LD+ +  + G+ +
Sbjct: 8   ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDGYTM 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR +  + PV +L+      DK++G  +G DDYI KPF+  EL  R+ AI++R++ +
Sbjct: 68  LCKLRESS-NIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKSN 126

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   D+ +N    TV+     I LT KEY+++  L++ K    + +M    L+
Sbjct: 127 NNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELLW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                     + + I  LR+KL ++     YI+T+WG GY + ++
Sbjct: 187 KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 231


>gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 236

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D+  L   ++  LK E +  V       +  +     E D IILD+ L D  G 
Sbjct: 4   RILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIMLPDGNGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +    +R    + P+  LS  S   DK+  L  G DDY++KPF+ +E+V R+++ +RR+ 
Sbjct: 64  DFCAKIR-GHSTVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQLRRAG 122

Query: 120 --------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                   R     ++  G  ++N D   + +    + LT KE  ++     R+   +++
Sbjct: 123 TYAKQDTARSGESRILKAGPFTMNEDETEMYLHDQPLDLTAKEAGLLACFIRRQGQIISQ 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E     +++         + V I +LR+K+         I+TV G GY L
Sbjct: 183 ETLYETVWNESYFGAANTLMVHIRRLREKVEENPSSPVLIKTVKGLGYRL 232


>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 226

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   I+L+ED+++LA  +   L+ E + V     G + +E+ K  +   I+LD  L   
Sbjct: 1   MKKAVIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIY 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  VLR +R +  + P+ +++  S   D    L  G DDYI+KPF  EEL+ARIR ++R
Sbjct: 61  DGLTVLRRIRQSS-NVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLR 119

Query: 118 R--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R   +   +         +NL      V G R+HLT KE+ ++  L        T++  L
Sbjct: 120 RLGQKKAEKYDYKFRPFEINLLKHQFMVDGKRVHLTPKEFSLMVALIKEPGVVQTRDDLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           N ++    + +   +DV+I  LR KL      ++ I+TV G GYVL + 
Sbjct: 180 NEIWGYDFDGQTNTVDVYIRALRNKLGKY---RDLIKTVRGIGYVLGDE 225


>gi|295699191|ref|YP_003607084.1| transcriptional regulator [Burkholderia sp. CCGE1002]
 gi|295438404|gb|ADG17573.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 132/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G  L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +    +++  I +LR KL +       + TV G GYVL    + E+ 
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPSKLLHTVRGMGYVLEVREEAESS 228


>gi|296112612|ref|YP_003626550.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|295920306|gb|ADG60657.1| two-component system response regulator [Moraxella catarrhalis RH4]
 gi|326560872|gb|EGE11237.1| two-component system response regulator [Moraxella catarrhalis
           7169]
 gi|326563890|gb|EGE14141.1| two-component system response regulator [Moraxella catarrhalis
           46P47B1]
 gi|326566562|gb|EGE16708.1| two-component system response regulator [Moraxella catarrhalis
           12P80B1]
 gi|326566899|gb|EGE17038.1| two-component system response regulator [Moraxella catarrhalis
           103P14B1]
 gi|326569771|gb|EGE19821.1| two-component system response regulator [Moraxella catarrhalis BC8]
 gi|326570802|gb|EGE20827.1| two-component system response regulator [Moraxella catarrhalis BC1]
 gi|326575098|gb|EGE25026.1| two-component system response regulator [Moraxella catarrhalis
           CO72]
 gi|326576816|gb|EGE26723.1| two-component system response regulator [Moraxella catarrhalis
           101P30B1]
 gi|326577731|gb|EGE27607.1| two-component system response regulator [Moraxella catarrhalis
           O35E]
          Length = 237

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L+    +V +   G   I      + D ++LD+ L    G  
Sbjct: 10  RILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVMLPGSDGLA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 70  VCREVRA-HYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +   +  GDL ++   ++V +    +  T  EY ++ LL+      L++E     
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ + +     I+TV  +GY+  +  
Sbjct: 189 LRGIEYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGYLFVKEG 236


>gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 233

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDK +A+SI L L++E F+V     G + IE+ K    D II+DL +  + G E
Sbjct: 5   KILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ LR      P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR   
Sbjct: 65  AIKKLRDISF-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHS 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +  +I  G++ +N   KT  V    I+LT  EY+++E L    N   + E    H
Sbjct: 124 YDNLASSEIIQIGNVKLNTLEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEH 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++     E K + V I ++R+K+        YI+  WG GY   +N +
Sbjct: 184 VWN-EPAIEAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231


>gi|296117363|ref|ZP_06835953.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
 gi|295976129|gb|EFG82917.1| two component transcriptional regulator, winged helix family
           protein [Gluconacetobacter hansenii ATCC 23769]
          Length = 256

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 112/225 (49%), Positives = 160/225 (71%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+E DKA+       L++  F V     G D I + K Y++D  +L+LGL D+ G 
Sbjct: 1   MRVLLVEPDKAMMDKEASQLQAVGFMVDHATSGHDAIAMLKLYDYDIAVLELGLPDMEGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R  R A+I+TP+ ILS   S + KV+   +GADDY+++P++  EL AR++A++RRS+
Sbjct: 61  DVVRRCRAARIATPILILSAQDSAQAKVKAFSTGADDYVTRPYDPMELTARMQAVIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+++  +  G L ++LD++ V V G  +HLTGKEY ++ELL LRK   LTK+ FLNHLY 
Sbjct: 121 GYSEPTLQAGALRLSLDSRDVSVNGRSVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKL  A GG+N I TVWG+GY+L+++A
Sbjct: 181 GMDEPEMKIIDVFICKLRKKLQKA-GGENLITTVWGQGYMLKDDA 224


>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 227

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD A+   +   L+   +  Y    G + +   +  + + IILDL L  + G +V
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGEQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++  K + PV  LS     + K+  L++GADDY++KPF+ EEL+ARI  I+RR   +
Sbjct: 65  LAEIKKTK-NVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYEN 123

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + SL+  GDL+++       ++  ++ LT  E+ ++++L        TK+M    L+
Sbjct: 124 QYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQLW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   E     I+V I  LRKK++     K+YI+TVWG G+ +
Sbjct: 184 NEALEGSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKM 225


>gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
 gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
           str. Alaska E43]
          Length = 233

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +  +I   LK++         G++ +E     + D +ILDL +  I G E
Sbjct: 6   KILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGTE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+      D++ GL+ GADDYI KPF+  E+V RI+ I RR   
Sbjct: 66  VCKEIRKIS-NVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + L+   + +++LD   + +   +I +T KE Q++ LL+  +   L++E  L
Sbjct: 125 ANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEIL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      + +++D  I ++RKK+    G K  I+TV+G GY   
Sbjct: 185 DKVWGYDYFGDTRVVDTQIKRIRKKIPEE-GEKWSIKTVYGIGYKFE 230


>gi|326571623|gb|EGE21638.1| two-component system response regulator [Moraxella catarrhalis BC7]
          Length = 237

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L+    +V +   G   I      + D ++LD+ L    G  
Sbjct: 10  RILIVEDDERLAMLTQDYLRKNGLDVAIETDGARAIRRIIGEQPDLVVLDVMLPGSDGLA 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 70  VCREVRA-HYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 128

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +   +  GDL ++   ++V +    +  T  EY ++ LL+      L++E     
Sbjct: 129 VPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ + +     I+TV  +GY+  +  
Sbjct: 189 LRGIEYDGQDRSIDVRISRIRPKIGDDSENPKRIKTVRSKGYLFVKEG 236


>gi|312958810|ref|ZP_07773329.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
 gi|311286580|gb|EFQ65142.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas fluorescens WH6]
          Length = 224

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++  A  ++  L    + V     G DG+ L + + ++ +ILD+ L +  G+
Sbjct: 1   MRILVVEDEQKTADYVQQGLSESGYVVDCAPSGVDGLHLARQHRYELVILDVNLPNTDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR       V +L+    + DK++GL  GADDY+ KPF   EL+AR+R ++RRS 
Sbjct: 61  EVLEQLRRDGDQ-RVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSE 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++           RI LT KE+ ++ +L  +    +T+   ++ ++
Sbjct: 120 HIPLPEVLRVADLELDPRRHRAYRGNRRIDLTTKEFALLHVLMRQTGEVMTRTQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V I +LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDCDTNVVEVSISRLRAKV-DDQSEVKLIHTIRGVGYVLE 221


>gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
 gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1]
          Length = 223

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G    +   +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFTSGESGCNALEAAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G++ +   + +V      I L  +E  ++EL        LT+      LY 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMRDDEAIELKSRELALLELFMRNPGRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +     ++V I  LRKKL     G  +I T+ G GY L     D+
Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSGFIRTLHGVGYTLGAAECDQ 223


>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LA  +   L++  F V +   G++        +   +ILDL +  + G
Sbjct: 1   MKHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++         ++   + +  Q   ++LT  E++++EL         ++   L+H+ 
Sbjct: 120 DRKSEPE-SNDLFRMDKSQQRIWYQQKALNLTPTEFRLLELFLEHVGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA---GGKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+S+AA       +I+ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKISDAAETGNRHEWIQAVYGVGYRFE 224


>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 236

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +  +I++ LK++ ++V++ + G++G+E+         ++D+ +  + G  +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K   P+  LS  S   DK+ GL  GADDYI+KPF   EL+AR+R+ +RR    
Sbjct: 65  TMEIR-KKYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQI 123

Query: 122 ------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         + +     L++N   K V V    + L  KE+ ++ELL        
Sbjct: 124 LLLKEHASSTLKSEEEIYCIDALTLNSTTKEVLVDDVPVKLRPKEFMILELLMKHPGRVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++  +    + + V I KLR+K+        Y++ VWG GY + +
Sbjct: 184 SAQQIYEAVWN-EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236


>gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 239

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ +LA  +        +   V   G + +   +  +   +ILDLGL  + G EV
Sbjct: 14  ILIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGLPSLDGVEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R       + +L+  +   D++ GL  GADDY++KPF+   L+AR++A+ RR R  
Sbjct: 74  ARRIRTFS-DCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSA 132

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +  G+L+++  A+ V++    I LT  E+ ++  L+      ++++  +  +
Sbjct: 133 ITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + +++D  I  LRKKL ++A    +IETV G GY +
Sbjct: 193 WGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRM 235


>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    + +  + V+  ++TV V G  I +T  E++++      +   +++E  +  
Sbjct: 124 TVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLITK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGQKATC---IVTVVRAGYKFE 225


>gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 231

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +++ L+   F++     GE+ +++    +    ILD+ L  I G+E
Sbjct: 4   KILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGISGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V   +R       + ++S  S   DK+ GL+ G DDYI KPFN +EL+ R+R+++RR   
Sbjct: 64  VCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRRVNF 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    ++I  G   ++L A+        I +T  E+ +++   L K   +++   
Sbjct: 124 TEDEKKEKNDNVIEDGIFKLDLYARNFYKNNKEIDVTPTEFIILKNFILNKGKAMSRMEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+        YIETVWG GY  R
Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPAKPEYIETVWGTGYRWR 231


>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   I  +LK E F+V     G D +E     + D  +LD+ +  + G+E
Sbjct: 3   KILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             +  R      P+ +L+  S +  KV+G + G DDY++KPF  +EL+ RI+A++RR + 
Sbjct: 63  FCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYKV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  +I  G+L ++  + TV     +  +  KE++++ +L      TL+++  +  ++  
Sbjct: 123 AASRIINIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E   + +DV I +LR++  +       I T+ G GY + E
Sbjct: 183 DFEGNERTLDVHINRLRERFQSDIYKFK-ITTIRGLGYRVEE 223


>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Edwardsiella tarda
           EIB202]
 gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
           [Edwardsiella tarda FL6-60]
          Length = 232

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLMV 229


>gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae
           T7901]
 gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae
           T7901]
          Length = 225

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+ A+   +     S+NF +     GE+G      Y++D  ++DLGL  + G 
Sbjct: 1   MKMLIVEDEAAIRQQLTDYFSSQNFVIDAVADGEEGAWQAVEYDYDFAVIDLGLPKLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR A    PV IL+     +DKV GL++GADDY+ KPF+ EEL AR  A++RR+ 
Sbjct: 61  EIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G ++++   K V V    I LT  EY  +E L+L     ++K     HLY 
Sbjct: 121 GSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLYH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +  +I+VFI +LRKKL         I T+ G+GY     A
Sbjct: 181 QDFERDSNVIEVFIGRLRKKLDPD-NQLKPISTIRGQGYRFTVEA 224


>gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 222

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
          Length = 240

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L H +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGHLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
           linens BL2]
          Length = 281

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  +A      L++  F V     G   +E       D +ILD  L  I G E
Sbjct: 55  RLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKLPGIDGTE 114

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR    + PV +L+ +S+ ED++ GL+SGADDY++KPF+  ELV R+++I++R+  
Sbjct: 115 VCRRLRSF-TAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKRTVD 173

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    G   +++  + V   G  + ++ +E+ ++       +    +E  L  ++
Sbjct: 174 ESTPEAPFRLGPFHLDVSGRRVSRNGIPLEVSAREFDLLAFFLKHPHQVFDRETLLRSVW 233

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +   I V + +LR+K+ +      ++ TVWG GY    + ++E
Sbjct: 234 GWE-IGDPSTITVTVRRLREKIEDDPSHAQFLSTVWGAGYRF--DVEEE 279


>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
 gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
           sp. R11]
          Length = 229

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+ + + +    D I+LD  + ++ G EV
Sbjct: 8   VLVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V     ++ L   E++++     +     ++E  L+ ++
Sbjct: 128 PSTVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGSDPVRTVRGAGYAL 228


>gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 230

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +  ++E+ LK+E   V+    G D + L + ++   II+D+ +  + G +
Sbjct: 5   KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR   
Sbjct: 65  ATFKIRENK-NIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRRYVN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +V G L ++   K + V G  I LT  EY+++ELL   K    + E    
Sbjct: 124 LGNYKETEDKVVAGALILDKKRKLIIVDGKEIRLTPIEYRILELLMENKGRVFSIEEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +          + V I ++R+K+   +    Y++ VWG GY ++E
Sbjct: 184 KAWKEPYYNGENTVAVHIRRIREKIEINSREPRYLKVVWGIGYKIQE 230


>gi|269102741|ref|ZP_06155438.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162639|gb|EEZ41135.1| hypothetical DNA-binding response regulator [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 225

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      +   L    + V     G  G+ +    E+  IILD  L  + G 
Sbjct: 1   MKILVIEDDNTTRDFVVQGLIEHGYVVDEASDGHQGLMMATSCEYSLIILDRMLPMLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  + STPV ILS M S+E++V GL +G+DDY+ KPF   EL+AR   +++R  
Sbjct: 61  KVLAAIRATENSTPVMILSAMDSVEERVVGLTAGSDDYLIKPFALAELIARAEILIKRHH 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              Q  +  V  DL ++L +  V      I+L  KE+ +++ L     + +++      +
Sbjct: 121 ATTQVATEYVYADLKLDLKSHRVWRGNRVINLQQKEFLLLQYLMGHAESVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   +P+  IIDV I  LRKKL +A G  + I TV G GYVLR++
Sbjct: 181 WNYHFDPKTNIIDVHIANLRKKL-DAEGEVSLIHTVRGAGYVLRQD 225


>gi|227518520|ref|ZP_03948569.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553045|ref|ZP_03983094.1| response regulator [Enterococcus faecalis HH22]
 gi|293387675|ref|ZP_06632220.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|307268529|ref|ZP_07549902.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307279075|ref|ZP_07560133.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|312904010|ref|ZP_07763178.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312907240|ref|ZP_07766231.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909858|ref|ZP_07768706.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952257|ref|ZP_07771132.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|227074002|gb|EEI11965.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177832|gb|EEI58804.1| response regulator [Enterococcus faecalis HH22]
 gi|291082864|gb|EFE19827.1| DNA-binding response regulator PhoP [Enterococcus faecalis S613]
 gi|306504200|gb|EFM73412.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306515125|gb|EFM83667.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|310626268|gb|EFQ09551.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310629641|gb|EFQ12924.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310632486|gb|EFQ15769.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311289816|gb|EFQ68372.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|315034073|gb|EFT46005.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315036741|gb|EFT48673.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|315145567|gb|EFT89583.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315147740|gb|EFT91756.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315151441|gb|EFT95457.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
 gi|315153220|gb|EFT97236.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315157827|gb|EFU01844.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0312]
 gi|315165474|gb|EFU09491.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1302]
 gi|315174346|gb|EFU18363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315578357|gb|EFU90548.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315579871|gb|EFU92062.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
          Length = 235

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPGFEV 62
           +IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + G  V
Sbjct: 1   MIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLATFLASPEKWDMITLDLNLPSMDGMAV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR+   
Sbjct: 61  CREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAEVA 120

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
             +            ++T    +N   +   +    I  LT KE+ ++  L+ +     +
Sbjct: 121 EAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQVFS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 REQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 233


>gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 225

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED++ LA  I   L+ E F       G  G+E  +    D I+LDL L  + G
Sbjct: 1   MKTILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            E+ + L+  + +   P+ +L+      D+V G + GADDYI KPF+  EL+ RIRA++R
Sbjct: 61  TEICKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVLR 120

Query: 118 RSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R+   A +  +V G + ++ +   V ++   I LT  E++++  L  R+    ++E  L 
Sbjct: 121 RAAPAAPACKLVIGPVHMDTERHQVLIENEEITLTTTEFKLLLNLVERRGRVQSRETLLQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + +D  + +LR KL  A      I+T+ G GY + E 
Sbjct: 181 DVWGYNYVGDTRTVDTHVTRLRTKLGQAG---EMIKTIRGFGYKMEEQ 225


>gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067]
          Length = 229

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 116/221 (52%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +       L+ E F V   + GE  ++L K    D +++D+ +  + G  +
Sbjct: 4   ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  ++  +  TP   LS ++  ++++ GL  GADDY+SKPF+  ELV R++ I+RR++  
Sbjct: 64  VMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRTKRS 123

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           ++   +  G L ++   + V V    + LT KE+ ++ LL+       +K   L  ++  
Sbjct: 124 SEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +   I+V I  LR+KL        +I+TVWG GY   
Sbjct: 184 EYDGDANTINVHIHHLREKLQXXDEKVIFIKTVWGLGYKFE 224


>gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           ++IL+ +D++ +   +   LK + + V   D G   +++   +      +ILD+ +  + 
Sbjct: 4   IKILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E LR++R      PV +L+   +  D++     GAD+YI+KPF+   L+AR++A+++R
Sbjct: 64  GWEALRSIRQ-YSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKR 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +         L ++L A TV V G  I LT KE++++  L       L++E  LN +
Sbjct: 123 LNININGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D     +V+ +D  I KLR KL       ++I+T+ G GY   
Sbjct: 183 WDYGYFGDVRTVDTHIKKLRLKLGEKG---DFIQTIRGLGYKFE 223


>gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 222

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED+K +   +   L++  F+       ++     K    D I+LD+ L    G+ +
Sbjct: 2   IYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEELPDLILLDIMLPGEDGYSI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L +L++++ +   PV +++   +  DKV+GL++GADDYI+KPF   E VAR++A++RR S
Sbjct: 62  LESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRRCS 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      + TGDLS+++    V  +   + LT KE+++++ L   K   +++   L H++
Sbjct: 122 KQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCHVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E + +DV +  LR+KL  A    N IETV G GY +
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGEAG---NLIETVRGVGYRI 220


>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
 gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
           23685]
          Length = 232

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSSW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNGDNGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLMV 229


>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED+K +   ++L L+ E ++V     GE+G+E  K   +D I+LDL +  + G
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R    + P+ +L+    I +KV  L  GADDY++KPF  EEL ARIR  +R  
Sbjct: 61  EEVCKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNK 119

Query: 120 RGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              + +  +  D L +NL    +      I LT  EY +   L L K   +++E  LN +
Sbjct: 120 SNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E KI+DV+I  LRKK+        +I TV G GYVL++ +
Sbjct: 180 WGYDYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKES 224


>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
 gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
          Length = 223

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 122/225 (54%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G++ ++     E + +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDE-EPNVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVM 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H       +I  G+L +    + V V G  I LT +E+ + +L +  K     ++  L 
Sbjct: 120 KHGVPKDDKVIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASNKQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     +I+T++G GY L
Sbjct: 180 KVWGFEYSGNTRAVDIMVQRLRKKLGASG---EHIKTIYGVGYKL 221


>gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 219

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 127/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++  +L++E++ V     G       +  ++D ++LDLGL    G 
Sbjct: 1   MRLLLVEDDAMIGEAVLQVLRAEHYAVDWVRDGVMADAALRSEQYDLVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLRALR  + S PV + +   ++ D++ GL +GADDY+ KP++ +EL+ARIRA++RRS 
Sbjct: 61  DVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +     +S+N   +   V G  + L+ +E+ ++E L  R    L++      L+ 
Sbjct: 121 GRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEEKLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +D+     ++V+I  +RKKL N      +I+TV G GYV
Sbjct: 181 WKDDVSSNAVEVYIHGVRKKLGND-----FIQTVRGLGYV 215


>gi|312960053|ref|ZP_07774566.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311285710|gb|EFQ64278.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 222

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D     +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAAYQGRSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A + TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLAQWRAAALVTPVLILTARDSWAERIEGLKAGADDYLSKPFHPEELHLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPTLQAAGLHLDEGRQCVLRDGEEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +++V +  LR+KL     G++ IET  G+GY  
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYRF 217


>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
          Length = 223

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V    I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
 gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
          Length = 235

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +   L  +       + G + + L +   FD ++LD  L D  G E
Sbjct: 8   QLLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +  +TPV +L+    +ED+V+ L  GADDYI+KPF   EL AR+RA +RRSR 
Sbjct: 68  ICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSRY 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL ++L ++ V+     + L+ +E+ ++  L         ++  L+ 
Sbjct: 128 ANPDAFAEPLTLGDLQLDLMSRKVQQGERELALSQREFDLLAFLVKHHGEVQARQHILDS 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   +DV++  LR+KL         + TV G G++
Sbjct: 188 VWGAPFVGDPNTLDVYMGYLRRKLE-GPDRPRLLHTVRGVGFM 229


>gi|296138804|ref|YP_003646047.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296026938|gb|ADG77708.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 121/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD ALA  + ++L++E F+  V   G   +   + +  D ++LDL L  + G +
Sbjct: 7   RILVIDDDPALAEMLTIVLRNEGFDSMVVGDGTQALGAAREFRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VARVLRADS-NVPIVMLTAKADTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRTAD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  G++ +++ A  V   G  + LT  E+ ++  ++ +     T+++ L  ++  
Sbjct: 126 EPSELLSIGNVIIDVPAHKVTRDGEVVPLTPTEFDLLVTMARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V I +LR K+         + T+ G GY 
Sbjct: 186 RHPADTRLVNVHIQRLRAKIEKDPENPEIVLTLRGVGYK 224


>gi|295101441|emb|CBK98986.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Faecalibacterium
           prausnitzii L2-6]
          Length = 233

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           ++L++ED+ ++   I L L+         D  E  + L +     DA ILD+ L  + GF
Sbjct: 3   KVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQRPGCDAAILDVMLPGMNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ RR  
Sbjct: 63  SLCETIRRTDQKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRVG 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +   A + +V+G   ++ + + +   G  I LT  E+Q++EL        L +E
Sbjct: 123 RSASAEAGEQAPASLVSGSFVLDENRRVLLKAGKPIELTQVEFQIMELFFRNPGVALVRE 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 183 RILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPAHILTVWGYGYRWEE 233


>gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11]
 gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11]
          Length = 218

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+S ++   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDLRLGEQIVETLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++  +  V  Q   + LT  EY+++       +  +++   + H+Y 
Sbjct: 121 GNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VFI ++RKK+       N I+TV G GY L
Sbjct: 181 QDFDRDSNTVEVFIGRIRKKI-----APNIIKTVRGLGYQL 216


>gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
 gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family
           [Atopobium parvulum DSM 20469]
          Length = 226

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 126/227 (55%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+K L  SI   L+ + + V + D G   +E+ +  ++D I+LDL L  I G 
Sbjct: 1   MKILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     T V ILS  SS+ D++ GL +GADDY+ KPF   EL ARIR ++RR  
Sbjct: 61  DLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRREY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H ++ +  G+L  +  A+ V V   +++LT KE  ++E L       ++ E  + H +D
Sbjct: 121 IHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     + V I  +RKKL  A G  + I    G GY  ++++ D
Sbjct: 181 SNVDLFSNSVRVHIFSIRKKLREALGY-DPISNKVGEGYCFKKDSDD 226


>gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  LA  I   L+   + V  +  GEDG  +     +DA ILDLGL  + G 
Sbjct: 1   MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R AK + PV IL+  +S  +KV GL+ GADDY++KPF  EEL+ARI A++RR+ 
Sbjct: 61  SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + I    L ++   + +   G  + LT  EY+ +  L +     ++K     H+Y 
Sbjct: 121 GHATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+ +  +I+V + +LRKK+   A     I T  G+GY L +
Sbjct: 181 QDDDRDSNVIEVLVNRLRKKIGADA-----IRTRRGQGYQLAD 218


>gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 242

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + ++ E +  Y    G   ++L + +  DA+ILD+ L D+ G 
Sbjct: 17  IRVLVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIMLPDMDGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  L      TPV  L+   ++ED+VRGL +G DDY++KPF+ EE++AR+R ++RRS 
Sbjct: 77  SVLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSG 136

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R +  S +  GDL++N D   V   G  I LT  E++++  L       L+K   L+ 
Sbjct: 137 AARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDR 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LR+K+   AG    I T  G GY+L+ 
Sbjct: 197 VWNYDFGGQANVVELYISYLRRKI--DAGRPPMIHTRRGAGYILKP 240


>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
 gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
          Length = 224

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
           Ep1/96]
 gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
 gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Erwinia pyrifoliae DSM 12163]
 gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
          Length = 233

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDST-VDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSLIVTGD---------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q  +   +         L +N   +     G  + LTG E+ ++ LL+      +++E
Sbjct: 121 SEQQHLQHDNSSPTLEIDLLRLNPGRQEASFDGETLDLTGTEFTLLYLLAQHLGQVVSRE 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 HLSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGHPWFKTLRGRGYLMV 230


>gi|116696122|ref|YP_841698.1| response regulator [Ralstonia eutropha H16]
 gi|113530621|emb|CAJ96968.1| response regulator of copper response,OmpR-family [Ralstonia
           eutropha H16]
          Length = 231

 Score =  255 bits (652), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D +ILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGEYLRQGLTEAGFVVDLVANGLDGQHLAMTEPYDLVILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR A+I+ PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RIVQALRAAEIAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 AQMALDRIQVADLVLDLGRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +IDV I +LR K+ +       I+TV G GYVL
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDEFEPKLIQTVRGMGYVL 221


>gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis
           subsp. mobilis ZM4]
 gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
          Length = 231

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  ++     +NF V  T  G++ + L +    D ++LD  +    G E
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     +D++RGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   ++  +   D+ ++L +  V+  G  + +   E++++  L        ++E  L+++
Sbjct: 125 RPALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +    + E++ +DV I +LRK L+   G  + I TV   GY L  + +
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKALNRD-GLPDLIRTVRSAGYALDTDEE 231


>gi|157803257|ref|YP_001491806.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
 gi|157784520|gb|ABV73021.1| preprotein translocase subunit SecB [Rickettsia canadensis str.
           McKiel]
          Length = 237

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 128/223 (57%), Positives = 166/223 (74%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED   +A+ IEL L SE        +G + + L K   +D +ILDL L DI  F
Sbjct: 1   MRVLLIEDKPEMANLIELTLASEGIVCDKASVGVEDLRLAKVSGYDLVILDLMLPDINSF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR AKI TP+ ILS ++  + K+ G   GADDY++KPF +EEL+ARI+AIVRRS+
Sbjct: 61  EILLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKPFVREELIARIKAIVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S+     +SVNLD ++VEV+G ++HLT KEY ++ELL LR+ T LTKEMFLNHLY+
Sbjct: 121 GHVASVFRFDKVSVNLDTRSVEVEGKKVHLTNKEYAVLELLILRRGTILTKEMFLNHLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DEP +KIIDVFICKLRKKLS+AAGG++YI+TVWGRGY+L+E
Sbjct: 181 SVDEPAIKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYMLKE 223


>gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 224

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   I+ P+ IL+     +DKV GL +GADDY++KPF+ EEL+AR  A++RRS 
Sbjct: 61  ELINKARAQGITIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGVLNPVETLRGRGYRLK 221


>gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
 gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family
           [Pedobacter saltans DSM 12145]
          Length = 230

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 114/227 (50%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E + V+    G+D I   +    D IILD+ +  + G E
Sbjct: 7   KILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+       ++ G   GADDYI KP     LV+RI AI+RR+
Sbjct: 67  ACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRRN 126

Query: 120 RGHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +    + I   DL ++ DA  V   G +I L  KE++++ LL+ +     T+E+ L
Sbjct: 127 LQGEEETFSNKIEIADLVIDRDAFLVFKGGEKIVLAKKEFELLYLLASKPGKVYTREVIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++++       + IDV I KLR+KL +      Y+ TV G GY   
Sbjct: 187 RNIWEDSVVVTNRTIDVHIRKLREKLKDN-----YVTTVKGVGYKFE 228


>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
 gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
           D16]
          Length = 226

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 121/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +I   L+ + + V     G+   EL     +D  +LDL L  + G 
Sbjct: 1   MRILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R       V ILS   S+ DKV+GL +GA+DY++KPF  EEL ARIR+++RRS 
Sbjct: 61  DVLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++V   +S++   +   V G +I LT KE  ++E   L     +++E  + H+++
Sbjct: 121 VQENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +     + V I  LRKKL  A    + I T  G+GY LR
Sbjct: 181 MEIDSFSNAVRVHIATLRKKLKQALAY-DPIVTRIGQGYCLR 221


>gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030]
 gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030]
          Length = 233

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   V   G+  +   +    D ++LDL L  + G +V
Sbjct: 5   ILIVEDEESLADPLAYLLRKEGFEAVVAPDGQAALTQFEANNVDLVLLDLMLPGMSGTDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + LR      P+ +++   +  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 65  CKKLRATS-DVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRRRSDV 123

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    +++++  G + ++++  TV V    + +  KE+ ++E L       LT+  
Sbjct: 124 ADPPGEEESSENILEGGRVRLDVERHTVYVDDQPVPMPLKEFDLLEYLMRNAGRVLTRGQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ ++      + K +DV + +LR K+         + TV G GY   
Sbjct: 184 LIDRIWGSDYVGDTKTLDVHVKRLRTKIEQEPSRPEQLITVRGLGYKFE 232


>gi|167032955|ref|YP_001668186.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166859443|gb|ABY97850.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 222

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|297569293|ref|YP_003690637.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925208|gb|ADH86018.1| two component transcriptional regulator, winged helix family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 233

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L I+DD+ +   ++  L+   F +       +  ++ +  + D IILDL L D  G E 
Sbjct: 10  LLAIDDDQDILKVLKANLELHGFKLVTATSLTEARQVLESLQPDLIILDLMLPDGDGLEF 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             +L+      P+ +L+    + DKV GL+ GADDY+ KPF   EL+ARI+A +R S G 
Sbjct: 70  CCSLKSIHPQLPIIMLTARDKVSDKVVGLELGADDYVVKPFETSELLARIKARLRSSPGG 129

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-D 180
           A +  I  G+L V+L  +TV V G  I+LT KE+Q++  L   +N  +T++     L+ D
Sbjct: 130 APNPVIRAGELEVDLRNQTVSVNGQEIYLTAKEFQLLACLVENRNNLVTRDEIRKRLWRD 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +     ++IDV I  LR+K+        +I TV GRGY   E 
Sbjct: 190 SKIYSWSRVIDVHIQHLRQKIEKTPSRPRFIITVPGRGYRFAEE 233


>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
           3283-01]
 gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01]
 gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-03]
 gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-07]
 gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-22]
 gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-26]
 gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-32]
 gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
           3283-12]
          Length = 229

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD AL+  I   L+ + + V V   GE  +E  +    D ++LD  L  I G EV
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGISGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +LS      D +RGL +GADDY+ KPF+ E L AR++A++RR  
Sbjct: 66  CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRRL- 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +    L ++  +  VE  G  + L   EY+++E   L      ++E  L H ++
Sbjct: 125 PPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAWE 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E++ +DV I +LR+ L+     ++ I TV  RGY L
Sbjct: 185 RSSFVELRTVDVHIRRLRQTLNE-GDEQDLIRTVRARGYAL 224


>gi|187779471|ref|ZP_02995944.1| hypothetical protein CLOSPO_03067 [Clostridium sporogenes ATCC
           15579]
 gi|187773096|gb|EDU36898.1| hypothetical protein CLOSPO_03067 [Clostridium sporogenes ATCC
           15579]
          Length = 225

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 9/223 (4%)

Query: 7   EDDKALAHSIELMLKS-ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +D+K +  +IE+ L+S EN N+     G D +++ +  E   IILD+ +  + G      
Sbjct: 2   DDEKEIRDAIEIYLRSIENINIIKAADGLDALDVLENNEIHVIILDIMMPKLDGIRTCMK 61

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS------ 119
           +R  K + P+ +LS  +   DK+ GL  GADDY++KPFN  ELVAR+ + +RR       
Sbjct: 62  IRE-KNNIPIIMLSAKNEDTDKILGLNIGADDYVAKPFNPLELVARVNSQLRRYTNLGNF 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  +   I    L +N  +  V V G +I LT  EY ++ LL+              ++
Sbjct: 121 PQTASDDEICLDQLVINKTSHVVTVDGKKIKLTPIEYDILLLLANNPGRVFPSSQIYEYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++         + V I +LRKK+        YI+ +WG GY +
Sbjct: 181 WNEPSFKTENTVAVHIRRLRKKIEINPKEPRYIKVIWGVGYKI 223


>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 223

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR +
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 120 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 221


>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 242

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 140 AQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 237


>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 13/235 (5%)

Query: 1   MRIL---LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+I    +++DD  +   +E  L+ E +     +  E+ I L +    D  +LD+ L  +
Sbjct: 1   MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+E  R +R     TP+ ++S      DK+ GL+ G+DDY++KPF+  ELVAR+   ++
Sbjct: 61  NGYEFCRRIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQ 119

Query: 118 RSRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R +             L ++ + + V   G  + +T KE+Q++ LLS   N   +++  L
Sbjct: 120 RWKQMKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDE 228
           + ++        +++D  I ++RKKL         +ETVWG GY LR  E  KDE
Sbjct: 180 SLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLRTLEGTKDE 229


>gi|187477565|ref|YP_785589.1| osmolarity response regulator [Bordetella avium 197N]
 gi|115422151|emb|CAJ48675.1| two component system response regulator [Bordetella avium 197N]
          Length = 244

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 8/213 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV+V +  ++  +L +   FD ++LDL L    G  + R LR    +TP+ +L+ 
Sbjct: 30  SEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIMLTA 89

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
            +   D++ GL+ GADDY+SKPFN  EL+ARI AI+RR        +       I  G  
Sbjct: 90  KAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPY 149

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            +NL  +T+     ++ +T  E+ ++++ +      L+++  +        E   + +DV
Sbjct: 150 VLNLSTRTLTRNSEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            I +LRK +        +I+TVWG GYV   + 
Sbjct: 210 QISRLRKLIEPNPSKPVFIQTVWGLGYVFVPDG 242


>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
 gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
          Length = 222

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED  ALA  +  ML+   + V     G D +       FD +ILDLGL  + G 
Sbjct: 1   MRILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDPFDLVILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   RV   + PV IL+   S  +++ GLQSGADDY++KPF+ +EL+ R++A++RR+ 
Sbjct: 61  QVLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  S +  G  +++ +  +V      I LTG E++M+       +  L+K    +HLY
Sbjct: 121 GRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLASHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   + +  +++V + +LR+KL     GK  IET  G+GYV    A+
Sbjct: 181 DNESDRDSNVLEVHVNRLRRKL-----GKTVIETRRGQGYVFTGKAQ 222


>gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
 gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis
           HTCC2503]
          Length = 225

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  +   L+     V     G+ G  + +   +DA ++D  L  I G 
Sbjct: 1   MKILVVEDDADAAKFLIKGLREAGHAVDHALDGDTGKNMAESGGYDAYVIDRMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            +L   R A   TP   LS +  ++D+V GL++G DDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  TMLEMRRSAGDQTPALFLSALGEVDDRVAGLKAGGDDYLVKPYAFSELIARVEALGRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + Q+    GDL +++  +TV   G ++ L  +E++++E L    +  +T+ M L +++
Sbjct: 121 PTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREFRLLEYLIRHSDQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   +P+  +IDV I +LR K+         ++TV G GY L + 
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDRDFDKP-LLKTVRGAGYTLTDE 224


>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  254 bits (651), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  L   I   L  E + V     GE  +EL + +  D +ILD+ L  I G+ 
Sbjct: 3   KILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVLPKIDGWS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+  S  +D + G + GADDY+ KP++   L+ +++  + +  G
Sbjct: 63  VCRRIR-KNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLEKYSG 121

Query: 122 HAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +   ++ +   + +N+ A+ V V G+ I LT  E++M+  L   +   + +E  +  ++ 
Sbjct: 122 NMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + K ++  I  LR KL +       I TV   GY   E 
Sbjct: 182 YDFYGDEKTVNSHIRNLRAKLGSKGSC---IVTVIRSGYKFEEE 222


>gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
 gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185]
          Length = 219

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
 gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
          Length = 224

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ +    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|299133554|ref|ZP_07026748.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298591390|gb|EFI51591.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 239

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L +  ++D +++D  L    G 
Sbjct: 14  MRLLIIEDDRESAEYLAKAFREVGHVAELAGDGEEGLALAQSGDYDVLVVDRMLPKRDGL 73

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR    +TP  ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 74  SVIGTLREKGDTTPALILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 133

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++    GDL ++  +  V      I L  +E++++E L       +T+ M L +++
Sbjct: 134 GPSEETSYRVGDLELDRLSHQVRRGTTEITLQPREFRLLEYLMKHAGQVVTRTMLLENVW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+ +    +  + T+ G GY++R+
Sbjct: 194 DYHFDPQTNVIDVHISRLRSKI-DKGQERPLLHTIRGAGYMIRD 236


>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|296131168|ref|YP_003638418.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296022983|gb|ADG76219.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 258

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E F           +   + ++ D ++LD+ L D  G E
Sbjct: 23  RVLVVDDEAFLADFVATALRYEGFETQTAGTSAQAVASAQTFDPDLVVLDVMLPDRSGLE 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR   +  PV  L+   +  D++ GL  G DDY++KPF+ +ELV R+RA++RR+  
Sbjct: 83  TCRELRRLGLDAPVVFLTARDAQADRIAGLTVGGDDYVTKPFSLDELVLRVRAVLRRTGV 142

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++   DL V++ A      G  I LT  E++++   +      L+K   L+H
Sbjct: 143 PSPDADGDVLRFADLEVDVAAHAARRAGELIDLTPTEFKLLRYFTANAGRVLSKRQILDH 202

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++        ++  ++  LR+K+         I T+   GYV+R
Sbjct: 203 VWEYDFNGNDGVVQTYVSYLRRKVDVYP--PPLIHTIPRVGYVMR 245


>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL  +   K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPSGYQKD-IQTVRGIGYILKEQ 223


>gi|325292356|ref|YP_004278220.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325060209|gb|ADY63900.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 252

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD   A  +    +           GE G+ +     +D +++D  L    G 
Sbjct: 28  MKILVIEDDLEAAAYMTKAFREVGIVADHASDGESGLFMGCENSYDVMVIDRMLPRRDGL 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V GL++G DDY+ KP+   EL+ARI  + RR  
Sbjct: 88  SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++   GDL ++  +  V   G  I L  +E++++E L       +T+ M L +++
Sbjct: 148 KPEQDMVYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV + +LR K+         ++T+ G GY++++  
Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFEKP-LLKTIRGAGYMMKDEG 252


>gi|315646887|ref|ZP_07900002.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277817|gb|EFU41141.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 218

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +++ I++ L   N+       G   +E  +   FD I+LD+ +  I GFE
Sbjct: 4   KILIVEDDIHISNIIKMNLNIVNYATTEVYDGLAALEAIERETFDLILLDVMIPKIDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +   +   PV  L+  +S+ DKV GL+ GADDY+ KPF   EL+ARI  ++RR  G
Sbjct: 64  LMSKI--QRHRIPVIFLTAKNSVYDKVTGLKLGADDYMVKPFEAIELLARIETVLRRY-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S++   D+ VN+D + V +    + LT KEY ++ +L   KN  L++E FL+ ++ G
Sbjct: 121 KEESMMQFQDVQVNMDKREVTIHSQPVELTPKEYDLLVVLLKNKNIALSREQFLDKVWGG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +D+ I  LRKKL      +  I+T++  GY L +
Sbjct: 181 DYFGETRTVDMHIKSLRKKL----HLQENIKTIYKIGYRLED 218


>gi|312961275|ref|ZP_07775780.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
 gi|311284933|gb|EFQ63509.1| two-component system, OmpR family, response regulator [Pseudomonas
           fluorescens WH6]
          Length = 235

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V V   G++ +     ++   ++LDL L    G  
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVRVVHRGDEALAAFLDFKPKIVVLDLMLPGQSGLH 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR   
Sbjct: 68  VCREIRSVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQAP 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L+++   + V +    I LT  E++++ LL+    T L+++  LN + 
Sbjct: 127 EPTVRGALAFGRLAIDRSCRVVSLGEDTIDLTTMEFELLWLLASNAGTLLSRDDILNRMR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   + +DV+I KLR KL++       I+TVWG+GY+    A +
Sbjct: 187 GIAFDGLNRSVDVYISKLRGKLNDNPREPVCIKTVWGKGYLFNPFAWE 234


>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 229

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 113/220 (51%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ A+A  +   L+   ++      G   ++  +    D ++LD+ L  + G  
Sbjct: 6   KILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGTA 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    + PV +++      D++ GL+ GADDYI KPF+  E+VARI ++ RR   
Sbjct: 66  VCRELRRFS-TIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEW 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+         L ++     + + G+R+ LT  E++++ LL+       T+   L+  Y 
Sbjct: 125 GNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAYH 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           G  +   +IID  +  +RKK+S+     + I +V+G GY 
Sbjct: 185 GDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYR 224


>gi|301156196|emb|CBW15667.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Haemophilus parainfluenzae T3T1]
          Length = 222

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  + + +++ L    F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRVLLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R      PV IL+   +++++++G+Q GADDY+ KPF   E+V R++A++RR  
Sbjct: 61  DVLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G++ ++   +   +    I LTG+EY+++EL  L K   L++      L +
Sbjct: 121 GQVKPQIEHGNVKLDPAQRKAWLNEDEITLTGREYKLLELFMLNKERVLSRATIEEKLSN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 181 WDEELSSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 216


>gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 225

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      +      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDTTTIEYVVKGFVEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
           ++L ALR     TPV ILS +  ++++V+GL++G DDY++KPF   EL+ R   + +R  
Sbjct: 61  KLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRGL 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  G+L + L  + V + G+ + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 AKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K      G   IETV G GY LRE
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEELGFG-ELIETVRGAGYRLRE 223


>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
 gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
          Length = 224

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ RI+ + RR +
Sbjct: 61  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++ V    + V V G  I LT +E+ + +L          ++  L 
Sbjct: 121 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 KVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 222


>gi|225028056|ref|ZP_03717248.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
 gi|224954656|gb|EEG35865.1| hypothetical protein EUBHAL_02325 [Eubacterium hallii DSM 3353]
          Length = 245

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 87/238 (36%), Positives = 126/238 (52%), Gaps = 8/238 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED++A+A      L+  +F V + + GE G++     + D IILDL L D+ G
Sbjct: 1   MKHILIIEDERAVAELERDYLEINSFKVSIEETGEGGLQRALKGDIDLIILDLMLPDMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ R LR  +I  P+ I+S   S  DK+RGL  GADDYI+KPF+  ELVAR++A + R 
Sbjct: 61  FEICRELR-HRIDIPILIVSAKKSDIDKIRGLGIGADDYITKPFSPNELVARVKAHLNRY 119

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 R      I    L ++  A+ V V       T KE+ ++  L+   N   +K+ 
Sbjct: 120 IRLTRKRIDVNEYIEYPGLKIDKSARRVFVNEEERFFTTKEFDLLTYLATHPNHVFSKDE 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             + ++      E+  + V I K+RKK  NA     YIETVWG GY  R    D + E
Sbjct: 180 LFSAVWGMDSMGEIATVTVHIKKIRKKTENANVKSGYIETVWGSGYRFRVIDSDVSGE 237


>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
 gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
           [Planctomyces brasiliensis DSM 5305]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++++  ++   L+ + F+V     G+DG+   +    D I+LDL L    G EV
Sbjct: 6   ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            R LR    +    + +L+  S   D++ G   GADDY++KPF  + L++R++A++RR  
Sbjct: 66  CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRRPS 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++ ++Q ++    +SV+     V +    + LT  E++++  L  +      +   ++  
Sbjct: 126 AKSNSQDIVTCRGISVDRMNHRVTLNNEEVLLTPTEFKLLWTLVRQSGRPFRRNELMDTC 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    + IDV I  LR+KL + A   + IETV G GY  R  
Sbjct: 186 RGEDANALERTIDVHIRSLRQKLDDHA---DLIETVRGVGYRFRPE 228


>gi|329904416|ref|ZP_08273802.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547984|gb|EGF32724.1| DNA-binding heavy metal response regulator [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 218

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/217 (31%), Positives = 117/217 (53%), Gaps = 2/217 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED+      +   L+   + V +   G  G+ L    ++D I+LD+ L  I G+EVL+ L
Sbjct: 2   EDEPKTGDYLRKGLQENGYVVDLARDGTTGLHLAVQEDYDLIVLDVMLPGIDGWEVLKKL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R  K +T V  L+    + D+V+GL+ GADDY+ KPF   EL+ARIR ++RR+       
Sbjct: 62  RETK-ATAVLFLTSRDDVNDRVKGLELGADDYLIKPFAFVELLARIRTVLRRNPQREADT 120

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +   DL +++  + V   G RI LT KE+ ++ LL  R+   L++ +  + ++D   + +
Sbjct: 121 MNVADLEIDVLKRRVIRDGQRIDLTAKEFALLHLLVRRQGEVLSRSLIASQVWDMNFDSD 180

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++DV I +LR K+ +       + T+ G GY+  E
Sbjct: 181 TNVVDVAIRRLRAKV-DDPFPNKLVHTIRGMGYLFEE 216


>gi|295697225|ref|YP_003590463.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
 gi|295412827|gb|ADG07319.1| two component transcriptional regulator, winged helix family
           [Bacillus tusciae DSM 2912]
          Length = 231

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+EDD  +A  +   L+ E+         +    + +   +D  I+D+GL     G
Sbjct: 1   MKILLVEDDPRIAGLVVKGLEREHMATDHAPDAQTAQLMVEMNPYDLFIIDVGLPGSTDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F +   LR      PV  L+   S+ DK+ G   G DDY+ KPF   ELVARIRA+++R+
Sbjct: 61  FALCDILRRRGYDAPVLFLTARDSLADKLTGFDRGGDDYLVKPFAFAELVARIRALLKRA 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R      +  G+  ++    T  + G  + LT KE+Q++ELL      TL+K   L  +
Sbjct: 121 NRPLQPERLTVGEWELDPKTHTFSIAGQEVELTSKEFQLLELLMQYPRYTLSKIQILEQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLS----NAAGGK-NYIETVWGRGYVLRE 223
           +    +    +++V I +LR+K+     +        I+TV G GY L E
Sbjct: 181 WGFAPDAVTNVVEVTIGRLRQKIEGFYRDRGMHPGVVIQTVRGVGYRLVE 230


>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 239

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +A SI+L L S+N+ V V   G++ ++L    + D I++D+ +    G + 
Sbjct: 6   ILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKKNGIDT 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R   I  P+ ILS  S   DK+ GL  GADDYI+KPFN  EL+AR+ +++RR    
Sbjct: 66  TMLIRQESI-IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRRYSRY 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I  G + +N + K + V    + +T  EY+++ LL        + +   
Sbjct: 125 GGRYSEETEQSIRIGGIELNKETKQIFVDEEEVRITPLEYKILLLLMSYPGKVFSIDEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++        + + V I ++R+K+        Y++ VWG GY   +
Sbjct: 185 EQVWKEPAY-NPETVTVHIRRIREKIEINPKEPRYLKVVWGIGYKFEK 231


>gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
 gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD A+   +   L+   +  Y    G + +   +  + + IILDL L  + G +V
Sbjct: 5   ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQKVNLIILDLMLPGLSGEQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++  K + PV  LS     + K+  L++GADDY++KPF+ EEL+ARI  I+RR   +
Sbjct: 65  LAEIKKTK-NVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYEN 123

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + SL+  GDL+++       ++  ++ LT  E+ ++++L        TK+M    L+
Sbjct: 124 QYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQLW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   E     I+V I  LRKK++     K+YI+TVWG G+ +
Sbjct: 184 NETLEGTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKM 225


>gi|313499571|gb|ADR60937.1| Winged helix family two component transcriptional regulator
           [Pseudomonas putida BIRD-1]
          Length = 222

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTTGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|90423350|ref|YP_531720.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105364|gb|ABD87401.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 240

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +           GE+G+ L    ++D +++D  L    G 
Sbjct: 16  MRLLIIEDDRESADYLVKAFREVGHVADHAADGEEGLALADSGDYDVLVIDRMLPKRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 76  SVIGTLRDNGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+      GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 136 GPAEETSYKVGDLELDRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV I +LR K+         + T+ G GY++R+  
Sbjct: 196 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMIRDGG 240


>gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 219

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDDK++ + +E  L+ + + V     G + ++  +    D +ILD+ L +  G  +
Sbjct: 2   IYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIMLPEKDGLSI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + PV +L+  +   DKV GL  GADDYI+KPF+  EL++R++A++RRS+  
Sbjct: 62  LKEIREFS-NLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSKKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +   ++S+N   + V+V   +I LT KE++M+ LL       +++E FL  ++   
Sbjct: 121 DKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL        YI TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRSKLKETG---KYIHTVRNLGYKLGE 218


>gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
 gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    +   +   G DG+ +     +D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGYVADLVPNGTDGLHMALHGAYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGP 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G+  +++   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGNEGTMLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRMKI-DEGHAVKLIQTVRGMGYVLDVPQEE 227


>gi|145224468|ref|YP_001135146.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145216954|gb|ABP46358.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+  V D G D I L + ++ D +ILDLGL  I G E
Sbjct: 19  RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R+LR    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 79  VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 137

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LS+++ A+ V +    I LT  E+ +++ LS R    L++
Sbjct: 138 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + D       +++DV I  LR+KL + A    YI TV G GY +
Sbjct: 198 RQLLEIIRDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR
 gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis
           RP62A]
 gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144]
 gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909]
          Length = 219

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 129/220 (58%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+ V + + G+ G++      +D  ILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +  + I    S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR    
Sbjct: 64  CRQIRQKTTTPIIIIT-AKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRRQPD- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + ++    + ++ DA  V V GH++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 122 -KDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L++E F V     GE  +     +E   I+LD+ +  + G 
Sbjct: 7   IRVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L+       V +L+    I+D+V GL +GADDY++KPF+ EEL+ARI+A +R   
Sbjct: 67  AVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +   G  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR+KL +       I T+ G GY 
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224


>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
 gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
          Length = 232

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DDK +   I + LK+E  NV+    G + +E     +   ++LD+ +  + G + 
Sbjct: 7   VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R A+ + P+  LS  S   DKV GLQ G DDY++KPFN  EL+AR+++ +RR    
Sbjct: 67  TLKIREAR-NIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + LI    ++++LDAK V+  G  + LT  EY++IELL        +       
Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185

Query: 178 LYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++    +     + V I K+R+K+        +++ VWG GY + 
Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKME 231


>gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 222

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|145223425|ref|YP_001134103.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|145215911|gb|ABP45315.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
          Length = 251

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 120/230 (52%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ + F   V   G D I + + ++ D +ILDLGL  I G E
Sbjct: 19  RALVVDDELPLAEVVASYLERDQFEAVVAGNGVDAIAVARDFDPDVVILDLGLPGIDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR    +  V +L+   +  D V GL  GADDYI+KPF+  ELVAR+RA++RR R 
Sbjct: 79  VCRQLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYITKPFSPRELVARVRAMLRRPRV 137

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LSV++ A+ V +   +I LT  E+ ++E LS R    L++
Sbjct: 138 LQSATATAEREVAPPRRFGALSVDVAAREVGIDDEQILLTRTEFDILEALSGRPGIVLSR 197

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + DG       ++DV I  LR+KL + A    YI TV G GY +
Sbjct: 198 RQLLEIVRDGPWVGNEHLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 247


>gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
          Length = 225

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   ++ R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   + + L+ E + V  T  G + I L +    D +ILD+ L D+ G  V
Sbjct: 7   ILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLTV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    STP+ +L+  ++  D + GL  GADDY++KPFN +EL+ARIR ++RR    
Sbjct: 67  CQRVREF-ASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVPSV 125

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   +  G +++N   + V V+G  I LT  EYQ++ +L+ +    +T E  L  ++  
Sbjct: 126 NRPLTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWGN 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + V+I  LR+K+         + T WG GY L
Sbjct: 186 EPNRDNDYLKVYIWHLRRKIEFDPRQPQLLLTEWGVGYRL 225


>gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  LA  +   L +  ++      G   +   +  + D ++LDL L +  G +
Sbjct: 9   HVLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRGGLD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR R 
Sbjct: 69  ICRDLRKES-AVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRH 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G L ++ D     V G  + LT  E++++  L+       ++E  +  LY  
Sbjct: 128 DPHGAPAPG-LQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + +D  +  LR+KL   AGG++++ +V+G GY    
Sbjct: 187 HRIVTDRTVDSHVKNLRRKL-ADAGGEDWVRSVYGAGYRFEP 227


>gi|50954148|ref|YP_061436.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950630|gb|AAT88331.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 271

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  L   + + L  E++ V     G+  ++  + +  D ++LD+ L DI G 
Sbjct: 45  IRVLVVDDEHTLTDLLAMALHYEDWEVKTASNGQQALQFSREFRPDVVVLDIMLPDIDGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R      PV  L+   +++D++ GL +G DDY++KPF+ EELVAR+R ++RRSR
Sbjct: 105 QVLSRMRADGNEAPVLFLTAKDALDDRIAGLTAGGDDYVTKPFSLEELVARLRGLLRRSR 164

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++V GDL ++ D+  V   G  I LT  E++++  L       L+K   L+
Sbjct: 165 AAVADQDDPVLVVGDLVLDEDSYEVHRDGEPIQLTATEFELLRFLMRNPRRVLSKAQILD 224

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++         +++++I  LRKK+   AG    I TV G GY+++
Sbjct: 225 RVWSYDFGGSSSVVELYISYLRKKI--DAGRTPMIHTVRGAGYMVK 268


>gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 229

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +       +   G++ + L     +D +++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   ++TPV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++    +  GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTEN-GLPDPIKTIRGFGYVIQE 229


>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +NV     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    + +  + V+  ++TV V G  I +T  E++++  L   +   +++E  +  
Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLITK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + ++  I  LR KL   A     I TV   GY   
Sbjct: 184 IWGYEFAGDDRTVNSHIRNLRHKLGEKATC---IVTVVRTGYKFE 225


>gi|187927029|ref|YP_001893374.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|187728783|gb|ACD29947.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
          Length = 244

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 18/246 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----------FDAIIL 50
           MR+LL+EDD  +  S+   L+ + F +     GE  +                 FD ++L
Sbjct: 1   MRVLLVEDDDMIGDSVRKGLRHDGFTIDWVRDGEAALHAVTAPGAGGAEAGGTLFDLMLL 60

Query: 51  DLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           DLGL    G EV+R LR   I  P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL A
Sbjct: 61  DLGLPKRDGLEVVRELRQRGIVIPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAA 120

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R     +
Sbjct: 121 RMHALLRRQGGRADPLLRHGDVVLNPVTREVLRDGVPVKLSGREFAVLHALLARPGKVWS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                ++LY   +E     ++V+I  LRKKL     G + I+ + G GYV+    ++ + 
Sbjct: 181 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHLIQNIRGVGYVI---PRETSA 232

Query: 231 EYLETA 236
              E A
Sbjct: 233 SPAEPA 238


>gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. EC4024]
 gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11]
 gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1]
 gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989]
 gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. TW14359]
 gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9]
 gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O157:H7 str. FRIK966]
 gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9]
 gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB
 gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4196]
 gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4113]
 gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4076]
 gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4401]
 gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4486]
 gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4501]
 gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC869]
 gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC508]
 gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A]
 gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22]
 gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019]
 gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171]
 gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4206]
 gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4045]
 gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4042]
 gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. EC4115]
 gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli]
 gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11]
 gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7
           str. TW14588]
 gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli 55989]
 gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI1]
 gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O157:H7 str. TW14359]
 gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O26:H11 str. 11368]
 gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O103:H2 str. 12009]
 gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory
           system with QseC [Escherichia coli O111:H- str. 11128]
 gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O55:H7 str. CB9615]
 gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS
           119-7]
 gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS
           107-1]
 gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family
           [Escherichia coli W]
 gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS
           145-7]
 gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli W]
 gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. EC1212]
 gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli
           EC4100B]
 gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14]
 gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010]
 gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68]
 gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180]
 gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family
           [Escherichia coli KO11]
 gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia
           coli H120]
 gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS
           117-3]
 gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia
           coli E1167]
 gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli
           O157:H7 str. 1044]
 gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718]
 gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271]
 gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591]
 gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9]
          Length = 219

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|215425719|ref|ZP_03423638.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
           T92]
          Length = 210

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/210 (30%), Positives = 105/210 (50%), Gaps = 5/210 (2%)

Query: 17  ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76
             +L+ E F   V   G   +        D ++LDL L  + G +V + LR    S PV 
Sbjct: 1   AFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARS-SVPVI 59

Query: 77  ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL----IVTGDL 132
           +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR       +    + +G +
Sbjct: 60  MVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPV 119

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++++   V V G  I L  KE+ ++E L       LT+   ++ ++      + K +DV
Sbjct: 120 RMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDV 179

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +LR K+        ++ TV G GY L 
Sbjct: 180 HVKRLRSKIEADPANPVHLVTVRGLGYKLE 209


>gi|91778060|ref|YP_553268.1| two component heavy metal response transcriptional regulator
           [Burkholderia xenovorans LB400]
 gi|187920547|ref|YP_001889579.1| two component heavy metal response winged helix family
           transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gi|296157989|ref|ZP_06840822.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307726131|ref|YP_003909344.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|91690720|gb|ABE33918.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia xenovorans LB400]
 gi|187718985|gb|ACD20208.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phytofirmans PsJN]
 gi|295891757|gb|EFG71542.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|307586656|gb|ADN60053.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/228 (35%), Positives = 132/228 (57%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGMHLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +    +++  I +LR KL +       + TV G GYVL    + E
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPSKLLHTVRGMGYVLEVREEAE 226


>gi|33598501|ref|NP_886144.1| two-component response regulator [Bordetella parapertussis 12822]
 gi|33603445|ref|NP_891005.1| two-component response regulator [Bordetella bronchiseptica RB50]
 gi|33574630|emb|CAE39281.1| two-component response regulator [Bordetella parapertussis]
 gi|33577569|emb|CAE34834.1| two-component response regulator [Bordetella bronchiseptica RB50]
          Length = 225

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA  +   L  ++  V V   G +G  L    +++ +ILD+ L DI GF
Sbjct: 1   MRILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A  +TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+AR+ A+ RR R
Sbjct: 61  AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV I +LR KL +       + TV G GYVL 
Sbjct: 181 MNFDSDTNVIDVAIRRLRGKL-DDPYDAKLLHTVRGMGYVLE 221


>gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 238

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 6/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   I+  L+ E   V+    G   +E+ +    D I+LDL L D+ G E
Sbjct: 6   KVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGEE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+     +  + GL  GADDYI+KPF+  EL+ARI AI RR   
Sbjct: 66  ICSIVRKRS-RVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLNE 124

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +      DL +++  K +   G  I LT ++Y+++  L    N T T+E  ++
Sbjct: 125 EVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTREELIS 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                  +   + +D  +  +R+K+        YI TV G GY       +E  
Sbjct: 185 TALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNEEKS 238


>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 275

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 54  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 113

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 114 CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 172

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +       V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 173 KQ--IQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 230

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 231 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 270


>gi|325277746|ref|ZP_08143310.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097120|gb|EGB95402.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 233

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD AL+  I   L+  +F+V V   G+  ++  +  + D +ILDL L  + G +V
Sbjct: 4   ILLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQKPDLVILDLMLPGLDGLQV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GADDY+SKP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQGLPILMLTARDDSHDQVLGLEMGADDYVSKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LIV G L ++L  +TV  +G  + L+  EY ++ +L+      L ++  L  L
Sbjct: 124 EPRLDHDLIVIGGLRIDLAERTVSWRGDEVELSSGEYNLLVVLARNAGEVLNRDRILQQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 247

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   +   L+SE + V +   G   +E    +  DA++LD  L D  G  
Sbjct: 22  RVLVVDDEPDLTDVLGAALRSEGWEVRIACDGAGALEAADGFHPDAVVLDWMLPDTDGLG 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL ALR       V  L+   ++ED++ G+ +G DDY++KPF  EE++AR+R +VRR   
Sbjct: 82  VLHALRRRIPQVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAGM 141

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           SR      +V  DL ++ +A+ V   G  + L+  E++++  L       L+KE  L+ +
Sbjct: 142 SREADAPRLVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +         +++++I  LRKK+   AG    I TV G GYVL+++
Sbjct: 202 WSYDFGGRAHVVELYISYLRKKI--DAGQAPLIHTVRGVGYVLKQD 245


>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
           HI4320]
 gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
 gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 235

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++       G + I+  K   +D ++LDL L    G  +
Sbjct: 10  ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLMLPGKDGITL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ ++RR    
Sbjct: 70  CKELRQFS-DIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRYYRP 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +  +  + ++  A  ++     + LT  E+++I+ L+ +    L+++  ++HLYD  
Sbjct: 129 QDIVQNSALVIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSRDQLMDHLYDDY 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  I  LR+KL        +I +++G+GY     A
Sbjct: 189 RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWETAA 231


>gi|49081994|gb|AAT50397.1| PA1799 [synthetic construct]
          Length = 236

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR   
Sbjct: 68  VCREIRRV-ANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAP 126

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN + 
Sbjct: 127 LPASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + +DV I KLR KL +       I+TVWG+GY+   
Sbjct: 187 GIGFDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFNP 230


>gi|320352638|ref|YP_004193977.1| winged helix family two component transcriptional regulator
           [Desulfobulbus propionicus DSM 2032]
 gi|320121140|gb|ADW16686.1| two component transcriptional regulator, winged helix family
           [Desulfobulbus propionicus DSM 2032]
          Length = 229

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 112/226 (49%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLI+DD  L   +   L+ E F V      + G+      +   +ILD+ L    GF
Sbjct: 1   MRILLIDDDTELCDLLTEYLEQEGFAVSACHEAQQGLTTALAGDHSFLILDVMLPGFNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++LR +R A  + PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI RR  
Sbjct: 61  DLLRKIRQAS-TVPVLMLTARGDEVDRIVGLELGADDYLPKPFNPRELVARIRAIQRRGE 119

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R  A   ++  D+ ++   +TV      I LT  E+ ++  L  R    + +E  
Sbjct: 120 NGLGNRRTAPGKLLADDIVLDPGTRTVWRHDVEIPLTTVEFALLHALLKRIGQVVNREEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                  + E   + IDV I  LRKKL     G   I+TV   GY+
Sbjct: 180 AMEALGRKLELFDRSIDVHISSLRKKLGRNVNGIERIKTVRSVGYM 225


>gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  LA  +   L +  ++      G   +   +  + D ++LDL L +  G +
Sbjct: 9   HVLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRGGLD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR R 
Sbjct: 69  ICRDLRKES-AVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRH 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G L ++ DA    V G  + LT  E++++  L+       ++E  +  LY  
Sbjct: 128 DPHGAPAPG-LQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + +D  +  LR+KL   AGG++++ +V+G GY    
Sbjct: 187 HRIVTDRTVDSHVKNLRRKL-ADAGGEDWVRSVYGAGYRFEP 227


>gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 227

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL EDD A+A  +   L  E +NV V   G+  I+       D ++LDLGL D+ G E
Sbjct: 3   HVLLAEDDPAIAEPLARALSREGYNVVVQGTGQGAIDNASVA--DLVVLDLGLPDMDGLE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R   ++TPV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARAIRGLGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ V++ A         +HLT KE++++ +L     T + ++  +  ++
Sbjct: 121 DPTEAEELHAQDVKVDVAAHRAFQGERELHLTTKEFELLRVLVQGAGTVVVRDALMREVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   K +D+ +  LR+KL + A    YI TV G G+   
Sbjct: 181 GSEPIGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGLGFRFE 223


>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
           FD-1]
          Length = 225

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 128/226 (56%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  LA ++  +LK   ++V     G DG++      +D IILD+ L  + G 
Sbjct: 1   MRLLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLPGMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR LR   I+TPV +L+  S +EDK+ GL  GADDY++KPF   EL+AR+RA+ RR  
Sbjct: 61  EVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRRKG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S +    L++N D  +V  +G  + L+ KEYQ++ELL       L KE  +  ++
Sbjct: 121 EIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERIIEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E   I+V+I  LRKKL  +      I+T  G GY L +  
Sbjct: 181 GYESDVEYNNIEVYISFLRKKL-ASISAPVQIKTARGIGYSLEQEG 225


>gi|254518844|ref|ZP_05130900.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226912593|gb|EEH97794.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 234

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +I+L++D++ L   ++ +   E F  +Y  D G D I   K    D IILD+ L DI G+
Sbjct: 10  KIMLVDDERELLSLLKEVFIKEGFKEIYAVDNGIDAILQVKEKNPDMIILDVNLPDIDGY 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R    + P+  L+ M   E+K++GL++G DDY++KPFN +E+V R+++ +RR  
Sbjct: 70  KVCDRIRKFS-TCPIIFLTAMGEDEEKIKGLEAGGDDYVTKPFNIKEVVLRVKSQLRRGS 128

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++   +L   G++S+N +   V+     I LT KEY +I  L    N   +K      
Sbjct: 129 IVSEVKTNLYTFGNISINEETGEVKKGKENILLTAKEYSLILFLVKNINKVFSKSSLCEA 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +     I V I  LR+KL +      +I+T+ G GY L 
Sbjct: 189 IWGYEYDGYDNTIMVHIRHLREKLEDNPSDPKHIKTLKGIGYKLV 233


>gi|26989071|ref|NP_744496.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148548557|ref|YP_001268659.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|24983899|gb|AAN67960.1|AE016428_8 DNA-binding response regulator [Pseudomonas putida KT2440]
 gi|148512615|gb|ABQ79475.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 222

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  DVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDVQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 226

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +    + E   V     G + + +C+  +FDAII+D+ +  + GF 
Sbjct: 3   KILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVMMPKLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R  K   PV +LS      DK+ G + G DDY+ KPF+ +E++AR+R I+ R+R 
Sbjct: 63  ACKEIRKTK-DIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISRNRQ 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           H Q+           L V+L  ++V V G +  LT KE  ++  L   +N  L++   L 
Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +D  I  LR  L      K+ I T+ G GY   
Sbjct: 182 DVWGYDFYGDDRTVDTHIKMLRSSLGKY---KDAIVTLRGVGYKFE 224


>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
 gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Acetobacter pomorum DM001]
          Length = 229

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 115/221 (52%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD AL+  I   L+ + + V V   GE  +E  +    D ++LD  L  I G EV
Sbjct: 6   LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGISGLEV 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR    +   P+ +LS      D +RGL +GADDY+ KPF+ E L AR++A++RR  
Sbjct: 66  CRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRRL- 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +    L ++  +  VE  G  + L   EY+++E   L      ++E  L H ++
Sbjct: 125 PPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAWE 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E++ +DV I +LR+ L+     ++ I TV  RGY L
Sbjct: 185 RSSFVELRTVDVHIRRLRQTLNE-GDEQDIIRTVRARGYAL 224


>gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5]
 gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5]
          Length = 272

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL  +D+  L   +EL L+ EN  +     G + +E+ +  +   ++LD+ +  + G+ V
Sbjct: 45  ILAADDEAELLDVLELYLERENIGIRKAKDGIEAMEIFRSEKVHLVLLDIMMPGLDGYAV 104

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR +R      P  +L+  S   DK+ GL+ GADDYI+KP+N  E+VARI+A +RR+   
Sbjct: 105 LRKIRETS-RIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRRNYDY 163

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  + ++    L + ++   VE+ G  + LT  E++++ L   +     TK+    
Sbjct: 164 REETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFTKQQIFE 223

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++++   E +   + V I  LR KL  + G    I+TV G GY +   A
Sbjct: 224 NVWEDSYEGDDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIEREA 272


>gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
 gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum
           UT26S]
          Length = 228

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD A A  +   +    F V   D G DG+ L     + AIILD  +  + G  
Sbjct: 4   KILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ALR A+I TPV ILS + + ED+V GL SGADDY++KPF   EL+AR++ ++RR  G
Sbjct: 64  MLKALRAAEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGGG 123

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L ++ V+     + L  +E++++E      +  +T+ M L  ++
Sbjct: 124 GGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P   +IDV + +LR+KL +  G +  + TV G GY L   +
Sbjct: 184 DYHFDPGTNVIDVHVSRLRRKL-DDGGDRPLLHTVRGMGYRLGPES 228


>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 251

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL-TDIPGFE 61
           IL+++D+  L   +      E   V     G   IE      FD ++LD+ L +   G+E
Sbjct: 25  ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGYE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R LR  +   P+ +L+ + S  D V GL++GADDY++KPF   EL +RIRA++RR+  
Sbjct: 85  VCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAGP 144

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G +  L+  G ++++   + V + G  +H+T  E++++E L         ++  L  
Sbjct: 145 RPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLRA 204

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + IDV +  LR+KL        +I TV G GY L+
Sbjct: 205 IWGDSAYRDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRLQ 249


>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 233

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   + + L++  +     +  +           D ++LD  L    G E
Sbjct: 5   KVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLPGGSGIE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR ++ A+     PV +L+  ++  + ++GL  GADDYI+KPF   EL+ARI+A++RR+
Sbjct: 65  LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     +L+V  DL++++D++   V    + L   E+ ++           T+   L+ +
Sbjct: 125 KSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLLFFMSHPERAYTRSQLLDRV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLRENA 225
           +      E + +DV I +LR  L  A G     I+TV G GY   E  
Sbjct: 185 WGANIYVEERTVDVHIRRLRAALDAAEGDYSQLIQTVRGTGYRFSEQG 232


>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 243

 Score =  254 bits (651), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 9/236 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L   NF       G +  +    +  D ++LDL L D  G  +
Sbjct: 7   ILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLMLPDTDGLSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K + PV +L+ +    D++ G++ GADDY+ KPF+  EL+ARI+A++RR+R  
Sbjct: 67  CRELRA-KSNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRTRAL 125

Query: 123 AQS-------LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +        +      ++   + +    G    L+G EY+++ +L    N  L ++  
Sbjct: 126 PPNMRPESARCLCFAGWCLDTAERLLTAPDGVATPLSGGEYRLLHILLDHPNRVLNRDQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              ++    E   + IDV + +LR++L + +     I+TV G GYVL  + + +  
Sbjct: 186 TEMIHGREAEAYDRAIDVQVSRLRQRLRDDSREPTLIKTVRGEGYVLAASVQRQAS 241


>gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +   +  ML    +       G +G+   +  ++D +ILDL L    G  
Sbjct: 5   KILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYKSGDA 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR    S PV ++S   ++++K+     GADDY++KPF+ +E++ R+ A++RR   
Sbjct: 65  VLQELRSFS-SLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++  G L+V+ ++KT  V G  + LT KEY ++ELL    +   +K      
Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     E   ++V +  LR KL  A     YI+TVWG GY +
Sbjct: 184 IWNEEYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGYRM 227


>gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii
           DSM 13941]
 gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family
           [Roseiflexus castenholzii DSM 13941]
          Length = 226

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD A       +L+   + V         +   +    D ++LD+G+  + GF
Sbjct: 1   MEILVADDDLASVKLTSFLLEDAGYRVIKAYDAAGVLHAIEQRTPDLVLLDVGMPKVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R      P+  ++G   ++D+V GLQ G DDY+ KPF   EL+AR+ A++RR  
Sbjct: 61  DICRQIRRMS-DVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + I  G L+++    TV    G  + LT  E++++  L       L+ +  LN
Sbjct: 120 SDMVNPVTRISQGPLTLDPIEHTVLFEDGRHVVLTPIEFRLLYYLMQNSGRVLSPDQILN 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++ V++ +LR K+ +      +I TV   GY   
Sbjct: 180 KVWGYDYEGESNLVAVYVRRLRAKIESDGESPRHIITVRNLGYKFV 225


>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
           tenjimariensis]
          Length = 234

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 20/236 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ L  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVMLPGMDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 123

Query: 119 ----------SRGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      RG A+  + V GDL V+ +   V   G  + LT  E +++   S    T
Sbjct: 124 AGGAESPDPEGRGQAERGLLVFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGT 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+ 
Sbjct: 184 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLKP 234


>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
 gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
          Length = 237

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ N+   +   G+  I+  K ++   I+LDL L  + G  V
Sbjct: 11  ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLMLPGMDGISV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR      P+ +++  +   D++ GL+ GADDYI KPF+  E+VAR++ I+RR    
Sbjct: 71  CRELRKFS-DVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQPN 129

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     +      L ++ +A  V      + LT  E+++++ +S       +++  L+
Sbjct: 130 MTTSNSQTNSNNQTKLIIDENAFQVRYGSQLLELTPAEFRLLKFMSDNAGMVFSRDQLLD 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            LYD       + ID  +  LR+KL +    K +I +++G GY   E
Sbjct: 190 ILYDDHRVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWDE 236


>gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
 gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759]
          Length = 228

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++L L+   + V      ++  + C  + FD I+LD  L D  G +
Sbjct: 3   RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEA-DGCLEHGFDLILLDRNLPDGRGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      P+  L+   +  D + G ++G DDYI+KPF+ E L  RI A++RRS  
Sbjct: 62  YCRELR-KSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       GD+SV+ +   V +    I L+  EY+++ELL   K   LT++M +  
Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D  +   +   ++V I +LR+K+   AG   Y+ TV+G GY   E 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTFGET 228


>gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct]
          Length = 226

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E
Sbjct: 181 DDEERDANVIEVLVGRLRRKLE-ACGGFKPIDTVRGQGYLFTE 222


>gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82]
          Length = 223

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++     +   L    + +     G DG+ L    ++  IILD+ L  + G+
Sbjct: 1   MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR AK  TPV  L+   S++D+VRGL SGA+DY+ KPF+  EL+AR+RA +R+  
Sbjct: 61  QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +    L ++  +++V      I LT KE+Q++ LL+ R    + + +  + ++ 
Sbjct: 120 AL-NSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   +DV I +LR K+ +    +  I T+ G GY   
Sbjct: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219


>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 217

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 12/222 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   +   L    + V     GE+G++L   +  D ++LD+ +    G+
Sbjct: 1   MKILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RA++  K +TPV +L+  +  ED++RGL+ GADDYI KPF+ + L  R++ ++    
Sbjct: 61  EVCRAIKSEK-TTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLL---- 115

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +   G+     + K V +    + L  KEY ++  L+   +   ++E  LN+++D
Sbjct: 116 --GDEIYTIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWD 173

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E + + +D  I  LRKK+     G  YI TV G GY   
Sbjct: 174 LLCESDPRTVDTHIKNLRKKI-----GHEYITTVKGFGYKFE 210


>gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
 gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9313]
          Length = 268

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   + G  G  L   Y  D I+LDL L ++ 
Sbjct: 1   MKPCILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +++ ++  +DKV G  SGADDY++KPF+ EEL  R+++++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+            ++  G L++  +   V      + LT  E++++  L  R   T+ 
Sbjct: 121 RRTDRAPVGTNAHHEILSYGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
 gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT
           9211]
          Length = 258

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDDK +   +   L+   F+V   + G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +  ++DK+ G  SGADDY++KPF+ EEL  R++A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+          Q ++  G L++  +   V      + LT  E++++  L  R   T+ 
Sbjct: 121 RRTHRAPVGSSSHQEILNFGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLE 232


>gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
 gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280]
          Length = 240

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|257069090|ref|YP_003155345.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
 gi|256559908|gb|ACU85755.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Brachybacterium faecium DSM 4810]
          Length = 279

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 15/230 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++IED+  +  +I   L +E + V     G  G+        D ++LD+ L    G E
Sbjct: 16  RVVVIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVMLPGFDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+      D + GL  GADDY++KPF+  ELVAR++A++RR R 
Sbjct: 76  VCRRI-QADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRR 134

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A         Q  +  GDL ++   + V   G   HLT  E+ ++  L+    T LT+E
Sbjct: 135 AAPPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTRE 194

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L  ++D  D    + +D  +  LR+KL +       + TV G GY L 
Sbjct: 195 QLLADVWDWVDATGTRTVDSHVKALRRKLGSD-----LVRTVHGVGYALE 239


>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 230

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++D+  +   + L L    +N      G++ I   +   F  I+LD+ + ++ G+
Sbjct: 2   MNILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  R +R    + P+ +++      D V+GL+ GADDYI+KPF+++EL+ARI A++RRS 
Sbjct: 62  ETCRKIRSFS-NVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H   LI    +  +     + V G  + LT  E+ ++ L     N  L+++  +  ++ 
Sbjct: 121 QH--ELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVL 221
                E + +D  I  LR KL  A      +++TV+G GY  
Sbjct: 179 LDATTEDRTVDSHIRNLRDKLRKAKFPIDEHLKTVYGVGYRW 220


>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
 gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
           DSM 15981]
          Length = 233

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDKA+ + I   L+ E +  +  + G   I      + D ++LDLGL D+ G +V
Sbjct: 6   ILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDMDGVQV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R      P+ ++S  S   DK+  L +GADDY++KPF+ EEL AR+RA +RR    
Sbjct: 66  IAKVRTWS-QMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLRRLQYL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     ++   G L+++  A    + G+ +HLT  EY+++ LL+      LT      
Sbjct: 125 SASAEMESAVFTNGGLTIDFAAGCASLDGNELHLTPFEYKLLCLLARHVGKVLTHSFITK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E +V  + VF+  LRKK+   A    YI+T  G GY +
Sbjct: 185 EVWGSSWEGDVASLRVFMASLRKKIEADAAHPQYIQTHVGVGYRM 229


>gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  S    L++  F V     G+    L     +D ++LD+ L D  GF
Sbjct: 1   MRVLLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDDDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +  ALR    +  V + +   ++ED++ GL  GADDY+ KP+   ELVAR+RA++RR  
Sbjct: 61  VLCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPD 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +L+   DL ++   +     G  I LT KE+ ++E+L       LT+E    H +D
Sbjct: 121 HAAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +P   +IDV+I +LR+K+         + TV G GY L   ++
Sbjct: 181 DNFDPMSNVIDVYIARLRRKVDADGDVP-LLSTVRGAGYRLAVPSR 225


>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
 gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
          Length = 224

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 114/222 (51%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   ++   + ++F VY    GE  ++    +  D ++LD+ +  + G  
Sbjct: 4   KLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQAACH-PDLVLLDINMPGMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V   +R + IS P+  L+      DK++G Q GADDYI KPF+ +EL AR+ A +RR   
Sbjct: 63  VCEKIR-SHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRRENR 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     L    ++ ++   + V + G  ++L+ KE+ ++ELLSL       +E     ++
Sbjct: 122 KQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIYEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E     I   I K+R K   A    +YIETVWG GY  
Sbjct: 182 GLDGEGNSDTIMEHIRKIRSKF-TALSHHSYIETVWGVGYKW 222


>gi|187928825|ref|YP_001899312.1| winged helix family two component heavy metal response
           transcriptional regulator [Ralstonia pickettii 12J]
 gi|187725715|gb|ACD26880.1| two component heavy metal response transcriptional regulator,
           winged helix family [Ralstonia pickettii 12J]
          Length = 228

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 2/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG  L     +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDESKTGQYLRQGLTEAGFVVDLVGNGLDGQHLALNESYDLIILDVMLPDLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L +LR A+ + PV  L+   S+ D+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  RILLSLRAAESAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I  GDL ++L  +     G RI LT KE+ ++ELL+ R+   L + +  + ++
Sbjct: 121 VQMGLDRIQVGDLVLDLSRRRASRGGRRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           D   + +  +IDV I +LR K+ +    K  I+TV G GYVL      E
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDDFDAK-LIQTVRGMGYVLEAPEGQE 228


>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 222

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 126/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED  +LA  +   L  + + V     G D +       +D IILDLGL  +PG 
Sbjct: 1   MRLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIILDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R   ++TPV +L+   S  +++ GL++GADDY+SKPF+ EEL  R++A++RRS 
Sbjct: 61  EVLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQQTLQAAGLHLDEGRQCVVRDGQDVLLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+    A
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLFGGTA 221


>gi|330898407|gb|EGH29826.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 229

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIEDD      ++  L    + V  T  G DG+ L     +D I+ D+ L  I G+
Sbjct: 1   MHILLIEDDTKTGEYLKKGLGESGYKVDWTQHGADGLHLALENRYDLIVQDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  +   PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR I+RR  
Sbjct: 61  QIIEVLRARQ-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTILRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL ++L  + V  Q   I LT KE+ ++ LL  R+   L++    + ++D
Sbjct: 120 VREADHFHLADLELDLLRRRVTRQQQVIVLTNKEFALLHLLLRREGDVLSRAQIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRSKV-DLPYPVKLIHTVRGIGYV 218


>gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 227

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 77/231 (33%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V       D   + +  +FD +ILDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLHRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G  + L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
             DE E   ++V I  LR+KL N       +ETV G GY L    A  E  
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRLGPAQAPQEAA 226


>gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
 gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92]
          Length = 229

 Score =  254 bits (651), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  LA  +   L++  + V +   G +     K +    I+LDL L    G E
Sbjct: 6   HILIVEDEVGLAEILRDYLEASGYLVTMIHNGLEVTGWVKQHNPAVILLDLMLPGKDGME 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    +TP+ + +      D++ GL+ GADDY+ KP++  E+VAR++A +RR   
Sbjct: 66  ICKEIRTFS-NTPIIMTTARVEEIDRLLGLELGADDYVCKPYSPREVVARVKATLRRIAA 124

Query: 122 HAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + +   T D +S++ +     + G ++ LT  E++M++     +    ++   ++  Y 
Sbjct: 125 FSGNTPKTADPISLDEERFLAFIGGEQLELTPVEFRMMQTFLDNQGRVFSRSQLMDKAYT 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +     + +D  I  LRKK+         I +V+G GY    +A
Sbjct: 185 DQRVVSDRTVDTHIKNLRKKIQPHLPEGEVIHSVYGVGYKFEFSA 229


>gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1]
 gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1]
          Length = 224

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E +LK E F +++    G + + L K    D ++LD+ L D+ G 
Sbjct: 5   KILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVMLPDLSGH 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +       PV  +S  +   D++ G   GADDYI+KPF+ +E+  R++A ++ + 
Sbjct: 65  QLIKEI-HQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G++++      V      + LT KEY+++  L    N  ++KE   + ++ 
Sbjct: 124 KT----IQFGNITI--TDGIVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I V I +LRKK+        +I T+ G GY   
Sbjct: 178 EDYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKFV 219


>gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD ALA  ++     +NF V  T  G++ + L +    D ++LD  +    G E
Sbjct: 5   RLLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIE 64

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR      + P+ +L+     +D++RGL++GADDY++KPF+  ELVAR+ A++RR 
Sbjct: 65  VCRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRI 124

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R   ++  +   D+ ++L +  V+  G  + +   E++++  L        ++E  L+++
Sbjct: 125 RPALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYI 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +    + E++ +DV I +LRK L+   G  + I TV   GY L  + +
Sbjct: 185 WGQDSDIELRTVDVHIRRLRKALNRD-GLPDLIRTVRSAGYALDTDEE 231


>gi|256374532|ref|YP_003098192.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255918835|gb|ACU34346.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 233

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  +  + + E +       GE  I     ++ D ++LDL L D+ GF 
Sbjct: 8   RLLVVDDEPHIADLVATVARYEGWQAVTAGSGEAAIRAALDFQPDIVVLDLMLPDVDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV  L+      D+V GL  G DDY+ KPF+ EEL+AR+RA++RRS G
Sbjct: 68  VLDRLRGEGAMVPVVFLTARDGTADRVAGLTRGGDDYLVKPFSVEELMARLRAVLRRSTG 127

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  +S++   DL ++ D + V      + LT  EY+++  L  R  T LTK   L+H++
Sbjct: 128 PSWKRSVLKVADLVLDEDTREVRRGDRLVTLTPTEYELLRYLMRRSPTVLTKAQILDHVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +        ++++ +  LR+KL +  G +  I TV G GYVLR
Sbjct: 188 EYDFGGRSNVVELVVSHLRRKL-DVEGDEPLIHTVRGVGYVLR 229


>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 228

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF--DAIILDLGLTDIPG 59
            +L++ED+ +++  ++  L  E++ V     G   +E+ +  +   D ++LD  +  + G
Sbjct: 4   HVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR ++  + +TP+  L+    I DKV GL +GADDYI+KPF  EEL+AR+R I R+ 
Sbjct: 64  LTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKW 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +     L V+L A T EV G  ++LT +E+ ++      +   +++   L+ ++
Sbjct: 124 STSRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +   +D ++  LR  + +    K+ IETV G GY L
Sbjct: 184 GMDFDGQENTVDAYVRYLRATI-DLPNHKSLIETVRGVGYRL 224


>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 240

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 11/235 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+   I   L++ N+ V   +  E  +        D I+LD  L    G E 
Sbjct: 5   VLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKSGIEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R+LR    +   PV +L+      DKV GL++GADDYI+KPF+  EL+ARI+A++RRS 
Sbjct: 65  ARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRRSL 124

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEV-------QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             A   I     + +N     V V       +   + ++  E++++  L        T+ 
Sbjct: 125 PEASDEILNAEGVRLNPMTHRVTVINQEDGFREKELLVSPTEFRLLHFLMAHAERVHTRA 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L+ ++      E + +DV I +LRK L   AG  + I+TV G GY      +D
Sbjct: 185 QLLDRVWGDHVFVEDRTVDVHIRRLRKVLE-VAGKADLIQTVRGAGYRFSTRNED 238


>gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
 gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ
           [Alteromonadales bacterium TW-7]
          Length = 224

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+ E ++V +   GE G+     Y  D  ++DLGL  I G 
Sbjct: 1   MRILVIEDDLHLADNLRNALEKERYSVDLCHDGEAGLFHITEYPLDMAVVDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++   R   ++ P+ IL+     +DKV GL +GADDY++KPF+ EEL AR  A++RRS 
Sbjct: 61  ELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G + ++  ++ V V    + LT  EY+++E L +     ++K     H+YD
Sbjct: 121 GKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +I+VF+ +LRKKL +  G  N +ET+ GRGY L+
Sbjct: 181 QDFDLDSNVIEVFVLRLRKKL-DPEGTLNPVETLRGRGYRLK 221


>gi|221068907|ref|ZP_03545012.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220713930|gb|EED69298.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 235

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD A+A ++   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 9   MHVLLLEDDPAIARTVCYALEREGIAVTHSLLIADARQQWSRTTFDVLLMDVGLPDGNGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRS+
Sbjct: 69  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSK 128

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A    +   L ++   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 129 QFQPAAPAQLAKALQIDEQGQRALIHSRALDLTRREYQLLQSLVNAAGRILSRDALLEQI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    E   + +D  I  LR KL      +  I T  G GY L +  
Sbjct: 189 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQPG 235


>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
 gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
          Length = 238

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL +DD  +   + ++L SE + V     G + + L + + FD  ILD+ +    G E
Sbjct: 12  RILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVMMPKASGLE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   LR++  + P+  L+  S   DKV GL +G DDY+ KPF+  EL+AR++A++RR R 
Sbjct: 71  VCERLRLSS-NAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRRYRQ 129

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  G + ++  A+ V      + LT  EY+++  L+  +   ++    
Sbjct: 130 YGSAQGAQTGETIQAGPVLIDTRARRVSKGETPVALTDLEYEVLLALARNRGRVVSAREL 189

Query: 175 LNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             +++     P+    +   I  LRKKL         + TVWGRGY
Sbjct: 190 YENVWRSMYLPQSNNTVMAHIKNLRKKLEADPRDPQIVRTVWGRGY 235


>gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000]
 gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15]
 gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000]
          Length = 225

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++L L    + V     GE+   L +   +DA+ILDLGL  + G 
Sbjct: 1   MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R   ++TPV IL+   +  DKV G  +GADDY++KPF+ EEL+AR+RA++RRS 
Sbjct: 61  SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   +  G L ++  A    V G  + LT  EY+++  + + +   + +   + HLYD
Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKKL         IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKLGAD-----RIETVRGLGYRL 216


>gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 226

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD A++  +      E ++V     G++ I+L      D ++LDLGL D+ G +
Sbjct: 3   KVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVSS-SIDLMVLDLGLPDMDGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA R    S P+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RRS  
Sbjct: 62  VARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRSVS 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++  +I   D+SV++ A    +    + LTGKE++++ +L     + +++E  +  ++
Sbjct: 122 SDETVGMIKAQDVSVDISAHRAYLGDEELQLTGKEFELLTILLRSAGSVVSRESLMATMW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E   K +D+ +  LR+KL +     +YI TV G G+   
Sbjct: 182 SKDIETSTKKLDMHVSWLRRKLGDDVTEPHYITTVRGMGFRFE 224


>gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
 gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43]
          Length = 219

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILRKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|226311027|ref|YP_002770921.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093975|dbj|BAH42417.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 232

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+++D++ +   ++ +L  E    VY      +G    +    D +ILD+ L D  G+
Sbjct: 3   KVLIVDDEEDIVRLLKTVLIKEGIENVYTASTAAEGFGQFQDKHPDVVILDIMLPDGEGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R      P+  LS  +   DK+ GL  G DDYI KPF+ +E+  R++A +RR+ 
Sbjct: 63  DVCKKIRSIS-HVPILFLSAKTEEVDKLVGLAIGGDDYIGKPFSPKEVAYRVKAQLRRAE 121

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  +I  G    + +   +   G  I L  KE  +   L    N  ++KE   
Sbjct: 122 YQQVQVKADPIIQVGPFVFDEEKVELRKHGTIIELKPKELGLFTHLLKHPNQIISKEKLY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++          + V I KLR+K+ +      Y+ TV G GY L    KDE
Sbjct: 182 YQVWGEDFFGFDNTVMVHIRKLREKIEDDPSNPTYLLTVKGLGYKLV--VKDE 232


>gi|167760385|ref|ZP_02432512.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
 gi|167662058|gb|EDS06188.1| hypothetical protein CLOSCI_02759 [Clostridium scindens ATCC 35704]
          Length = 231

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+ A+  ++  +LK E   V     G+  +++ K   FD I+LD+ + +  GF++
Sbjct: 6   VLIIDDETAVQKAVSAVLKREQMEVSCAGSGQFALDILKENTFDIILLDVIMPEQDGFDL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR  +I TPV +LSG +    +V GL  GADDYI+KPF+K  LV++I+AIVRR+R +
Sbjct: 66  LSELRRRRIYTPVILLSGKTEDAAQVEGLGLGADDYITKPFSKTVLVSKIQAIVRRTRQY 125

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A      QS I+ G  +++++++T+   G  I LT KE+ ++ L       T +K+    
Sbjct: 126 ATTAESIQSPILKGPFTLHMNSQTIFKNGKEIALTSKEFALLCLFMDHPGHTFSKQELFQ 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   D  +   I V+I KLR K+ +      +I TVWG+GY  
Sbjct: 186 EVWK-NDGSDNNTILVYIKKLRSKIEDDPSQPFHIRTVWGKGYQF 229


>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 240

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 13/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ +   +   L    F V   D GE  + L      D ++LDL L  + G EV
Sbjct: 13  ILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGEV 72

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +ALR        P+ +L+     ++   GL  GADDYI+KPF+ + LVAR++A +RR R
Sbjct: 73  CKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRRGR 132

Query: 121 GHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             A           +    L ++     V V G  + LT  E+ ++ELL+ R     +++
Sbjct: 133 EVAGEEGGAGGVLRLEAAGLVIDPGRYQVLVAGEPVFLTLSEFGILELLARRPGWVFSRQ 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ +         + +DV +  LRKKL  A G    IETV G GY L+
Sbjct: 193 QIIDAVRGYDYAITPRAVDVQVFGLRKKLGAAGGC---IETVRGVGYRLK 239


>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
 gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 138/221 (62%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + V  +  G++G+ L   Y  DA I+D+GL    G 
Sbjct: 1   MRILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ALR      P+ IL+  SS +DKV+GL+ GADDY++KPF  EEL AR+RA++RR+ 
Sbjct: 61  EIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRRAV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A++V V G  I LT  EY+++E L   +   L+KE   + LY 
Sbjct: 121 GIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEYRLLEELVCHRGEILSKESLADALYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +++V I +LR+KL +  G    IET+ GRGY  
Sbjct: 181 HNEDRDSNVLEVMIGRLRRKL-DPEGTLKPIETMRGRGYRF 220


>gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
 gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
          Length = 223

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +   +  +L+ E F+V       +     +   FD I+LDL L D  G+ 
Sbjct: 3   RILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLMLPDGNGYA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   + + + +TPV  L+ +      V G   GADDYI+KPF   ELVAR++  +RRS G
Sbjct: 63  LCTEI-LHRGNTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRRS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            AQS+   G+LSV+    +V   G  I L+  EY+++  L   +   L++   L  ++D 
Sbjct: 121 RAQSVFQLGNLSVDTAGASVRRDGQEIVLSALEYRLLLTLLSHRGEVLSRSRLLQEIWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D      + V+I +LR+K+         I+TV G GY + +
Sbjct: 181 SGDFVNDNTLTVYIKRLREKIEKDPAEPRIIKTVRGLGYKVED 223


>gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82]
          Length = 240

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +        D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVCQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum ATCC
           824]
 gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Clostridium acetobutylicum EA 2018]
          Length = 230

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   I   L  E F +     G++ +   K    D IILD+ +  + G +
Sbjct: 4   KILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R++R    + P+  LS      DK+ GL+ GADDY++KPF+ +EL +RIRA  R+   
Sbjct: 64  VCRSIR-KSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFRKIDR 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +            L +N       +   +++L+ KE+Q++ +L    N  LT+E 
Sbjct: 123 LFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVLTREQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              H++   +  E+  + V I  +RKKL       ++I+T+WG GY  +E
Sbjct: 183 IYEHVWG-DEYGELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228


>gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
 gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni
           CNB-2]
 gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni
           S44]
          Length = 234

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L+IEDD   A  I   L+ +  +V V   G  GI       +D IILD  L     G 
Sbjct: 3   RYLIIEDDALNARYIAEGLRQQGAHVSVCGDGVQGIAQAVGENWDVIILDRMLPNGFDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR     TPV +LS +S+ +++VRGL++G DDY++KPF   EL AR+ A+VRR++
Sbjct: 63  QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 122

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A +  +   DL VNL +++ E  G  + L  +E++++  L    +  +T+ M L  ++
Sbjct: 123 IPAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D R +P+  +IDV I +LR K+         I TV G GY L +  +D
Sbjct: 183 DYRFDPQTNVIDVHISRLRSKVDKGFATP-LIHTVRGVGYSLSDQPQD 229


>gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586]
 gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341]
 gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586]
          Length = 219

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L + I   L    +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H+Y 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LRKK+       + I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKI-----APDVIKTVRGLGYQL 216


>gi|229589618|ref|YP_002871737.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|229361484|emb|CAY48360.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
          Length = 222

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELLAGLQRQGYAVDWLADGRDAVYQGRSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++ PV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLAQWRAAALAIPVLILTARDSWAERIEGLKAGADDYLAKPFHPEELYLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQTNQPTLQAAGLHLDEGRQCVLRDGAEIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           DG  E +  +++V +  LR+KL     G++ IET  G+GY    N 
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYRFGANP 221


>gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
 gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
 gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
 gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
           28-3-CHN]
          Length = 228

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  +EL LK + +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVREVK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ +  G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRPGEKSYIQTVRGTGYVIR 227


>gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 240

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++         G  + LT  E+++++ LSL  +   ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|220911579|ref|YP_002486888.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219858457|gb|ACL38799.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 246

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + ++L K +  D ++LD+ L    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKLAKDFRPDVLVLDVMLPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  ELLGRIRAFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVILRLHRLVQRSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N+D + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNVDTREVTRAGDDVQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WDYDFGGQANIVELYISYLRKKI--DAVHPPMIHTVRGAGYVIKP 244


>gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 223

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 125/223 (56%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA ++  +L    + V V   GE G++      +D +ILD+ L  + G 
Sbjct: 1   MRLLLVEDERQLAEALSELLIKNRYAVDVVYDGEAGLDYALTGIYDLVILDIMLPRMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+LR LR+  IS+PV +L+    +EDKV GL SGADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  EILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRKG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D ++NL    +E +   + LT KE+ ++     R N  L+K+  +  ++
Sbjct: 121 EMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E +   I+V+I  LRKKL    G +  I T+ G GY L 
Sbjct: 181 GFDSEADYNNIEVYISFLRKKL-AHIGSQAAISTLRGIGYKLE 222


>gi|319898567|ref|YP_004158660.1| two-component response regulator [Bartonella clarridgeiae 73]
 gi|319402531|emb|CBI76074.1| two-component response regulator [Bartonella clarridgeiae 73]
          Length = 228

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 120/227 (52%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E           +   G+ G  L +  ++D +++D  L    G 
Sbjct: 1   MKILIIEDDRETGRYLEKAFLEAGHAADIAYDGDTGYTLAETIDYDVMVVDRMLPHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +S ++D++ GL++G DDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIVAGLRAKGNETPVLILSALSQVDDRITGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++   GDL ++  A  V+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVGDLELDRLAHIVKRGEKNIVLQPREFRLLEYLMRYSGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D   +P+  +IDV I +LR K+         + TV G GY+L+   K
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAPDK 226


>gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 225

 Score =  254 bits (650), Expect = 7e-66,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED++ L  SI   L+   +       G +G+ELC    +D I+LDL L    G 
Sbjct: 1   MHILIIEDEEQLCCSIAEGLRMNGYETDTCFDGNEGLELCMTESYDLILLDLNLPGTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R +  +TPV ILS    I+DKV GL  GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  DILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G +  +   +   V    + LT KE  ++E   L +   ++ E  + HL+D
Sbjct: 121 IQEDICLKCGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEMIEHLWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           G        I V I  LRKKL  AA G + I+   G+GY+L E 
Sbjct: 181 GSVNSFSNSIRVHISSLRKKLR-AALGFDPIQNKIGQGYILMEE 223


>gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
 gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Eubacterium saburreum DSM 3986]
          Length = 230

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ L   I   +  E+        G  G+E  K  E+  IILD+ +    GF 
Sbjct: 3   RILVIDDDRELCALIRHTVLQESIEAECCHFGRVGLEKLKSNEYQLIILDVMMPGFDGFH 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L  +R      PV + +  +    KVRGL++GADDY++KPF  EEL+ARI +++RR   
Sbjct: 63  TLEQIRKESC-IPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTM 121

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G+    +    L ++LD ++   +     L  KE+ ++   +  +   +TK+    
Sbjct: 122 FNRNGNEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL    G   YI+TV G GY   +  
Sbjct: 182 KVWGEPYVYDDSNIMSVISRLRKKLETDPGNPKYIQTVKGIGYRFNKEV 230


>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ LK+E   V     G + +E+    E   I+LD+ +  + G   
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDGISA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ ILS  S   DK+ GLQ GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  THRIREEK-NIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I    L+++ ++K V VQG  + LT  EY+++ELL        +       
Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLMTNAGRVFSINDIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++          + V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 VWKEPGYNAENTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230


>gi|183600334|ref|ZP_02961827.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
 gi|188020124|gb|EDU58164.1| hypothetical protein PROSTU_03896 [Providencia stuartii ATCC 25827]
          Length = 220

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F +     G+ G        +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDRLIGDGLKVGLSQLGFTIDWFADGKQGQVALFDAPYDAVILDLSLPSVDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EILKFWRKEGRDEPVLILTARDALDQRVQGLQQGADDYLCKPFALAEVAARLQALIRRRS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G + ++  A TV   G RI L  KE  ++ L     N  L++      LY+
Sbjct: 121 GQLSPILKHGHIEMDPVAMTVTCHGERIELKSKELSLLSLFLHNPNKVLSRAFIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V I  LR+KL     G  +I TV G GY L E A
Sbjct: 181 WDEEVSSNAVEVHIHHLRRKL-----GTRFIRTVHGVGYRLGEEA 220


>gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
 gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704]
          Length = 224

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S        + G   +E       D ++LD+ L    G E+
Sbjct: 2   IFCVEDDSNIRELVVYTLESTGLKARGFEEGSSFLEALALETPDLVLLDIMLPGEDGMEL 61

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+ +      PV +++   +  DKV GL +GADDY++KPF   ELV+RI+A++RRS 
Sbjct: 62  LKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLRRSA 121

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  IV G++ +NL    V   G  I LT KEY++++ L    N  LT++  L  
Sbjct: 122 REGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E + +DV +  LR+KL +A      IETV G GY +RE
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGSAG---ERIETVRGVGYRMRE 224


>gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 233

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD AL+  I   L+  +F+V V   G+  ++  +    D +ILDL L  I G ++
Sbjct: 4   IFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDGLQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GADDY++KP     L+AR+R ++RRS  +
Sbjct: 64  CRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSSVN 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  LI+ G L ++L  +TV  +G  + L+  EY ++ +L+      + ++  L  L
Sbjct: 124 EPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRILQQL 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +DV I KLR+K  + AG    I+TVWG+GY+ 
Sbjct: 184 RGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 226


>gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 234

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I  IEDD+ALA  I   L+ E + +        G E     + D ++LD  L D  G  
Sbjct: 3   QIFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAIAERQPDLVLLDWNLPDGDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +       PV +++      D+V  L+SGADDYI+KPF+   L ARI A++RR  G
Sbjct: 63  LCREI-AGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRGG 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              S  +++GD+ +        ++   + L+  E+++++     KN  L KE  L  ++D
Sbjct: 122 QDSSGWLISGDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWD 181

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            G    E   + V I +LR K+   A    YI+TV G GY+  +   ++
Sbjct: 182 SGGSFVEENTLMVNIRRLRTKVEEDASHPRYIKTVHGMGYLWEDRPAEQ 230


>gi|118586833|ref|ZP_01544268.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889967|ref|ZP_06553053.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
 gi|118432753|gb|EAV39484.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480409|gb|EFD89047.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429]
          Length = 228

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL+IED+ A+   ++  LK E++ V     GE G+ + +      + ++LD  L    G 
Sbjct: 6   ILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +++  S I DKV  L SGADDYI+KPF  EEL+AR+R  +R   
Sbjct: 66  EVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQN 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L    +L ++LDA  V   G  I LT +E+Q++  L      TLT++  L++++ 
Sbjct: 126 KPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENAGKTLTRDDLLDNVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +    DV+I  LR+K+ +       I TV   GYVLR
Sbjct: 186 VDFNGQYNTADVYIRYLRQKI-DDHFYPKLIHTVRSVGYVLR 226


>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
 gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
           M045]
          Length = 249

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 25/246 (10%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGIDGLQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 65  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGNA 124

Query: 123 AQS------------------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMI 158
                                       +    L +++ A+        + LT  E+ ++
Sbjct: 125 GYGGAPAAPAAPGSARPAGPAERGGGGQLAVAGLRMDVQARRAWRGERELELTRTEFDLL 184

Query: 159 ELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           ELL+      L      + ++     P  K + V++  LR+KL +A G    I TV G G
Sbjct: 185 ELLARNSGIVLDHTTIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DAPGAPALIHTVRGVG 243

Query: 219 YVLREN 224
           YVLRE+
Sbjct: 244 YVLRED 249


>gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
 gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [gamma proteobacterium
           IMCC3088]
          Length = 230

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD ++A  +   L  +  N      G +G+       +DA+I+D  L  + G 
Sbjct: 5   MRVLLIEDDSSVADFVASELALKGHNCECASTGTEGLLAANSARWDALIVDRMLPKLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+++LR     TPV ILS +  ++D+V+GLQ GADDY+ KPF+ EEL+AR+ AI RR  
Sbjct: 65  SVIKSLRDKGDLTPVLILSALGEVDDRVKGLQIGADDYLVKPFSSEELMARLEAIHRRLA 124

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DL ++L  + V   G  I L  +EY+++E L       +T+ M L +
Sbjct: 125 PLGADFRTTLEAEDLRLDLITQEVRRAGRVIALQPREYRLLEYLMRNAGKIVTRSMLLEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +P+  +IDV I +LR+K+         + TV G GY   + 
Sbjct: 185 VWGYHFDPQTNVIDVHISRLRQKIDRDFDYP-LVHTVRGAGYRFGDE 230


>gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
 gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes
           SK187]
          Length = 243

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L +ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L+D  G 
Sbjct: 18  IRVLAVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLSDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV+R +R+ + +     L+   +   ++ GL +G DDY++KPF+ EE++AR+RA++RRS 
Sbjct: 78  EVMRQIRINQPTVRAVFLTAKDAASGRIAGLTAGGDDYVTKPFSLEEVIARLRALLRRSG 137

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKPDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G K  I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHKPMIHTMRGAGYVLKP 241


>gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662]
 gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 13/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE----FDAIILDLGLTDIP 58
           I ++EDD  +   +   L+S  F+       E GI   K        + ++LD+ L    
Sbjct: 2   IYIVEDDANIRELVIYTLQSTGFD---AGGYESGISFFKDLSAGKIPELVLLDIMLPGED 58

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  +LR +R    +   PV +++   +  DKV GL SGADDYI+KPF   ELV+RI+A++
Sbjct: 59  GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118

Query: 117 RRSRGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR +    +  +  G+L +++    V   G ++ LT KE++++ +L   K   LT++  L
Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVELTYKEFRLLCMLMESKGNVLTRDQLL 178

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++    + E + +DV I  LR+KL         IETV G GY +
Sbjct: 179 TNIWGYDFDGETRTVDVHIRTLRQKLGECGS---MIETVRGIGYRI 221


>gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 222

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  N    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 XNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
 gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
          Length = 224

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  +EL L+ +   V     G   +   +    D +ILDL L    G +V
Sbjct: 4   ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR+   +TP+ +L+ +    D V GL  GADDY++KPF   EL+AR+RA++RR+ G 
Sbjct: 64  CRALRLRH-ATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASGP 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY-DG 181
               +V GD+ ++ +A+TV +    + L  +E+ ++  L  +    ++++  L  ++ D 
Sbjct: 123 PVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCDH 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   + +DV + +LR+KL      +  IE++ G GY L
Sbjct: 183 EIDEASRTLDVHVNRLRQKLQ---KSRVRIESIRGIGYRL 219


>gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 229

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +   I+V I  LR K++      +YI+T+WG G+ +
Sbjct: 186 WKEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228


>gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19]
 gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19]
          Length = 234

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 130/220 (59%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+ + A  I  +L+ E F V   + G+ G+       +D I+LD  L DI G ++
Sbjct: 6   ILLIEDEASNADIISSVLRKEGFAVTWAETGQKGLAAAGMTPYDLIVLDRMLPDISGMDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR A + TP+ +LS +S  E++  GL+ GADDY+ KPF   EL ARIRA++RRSR  
Sbjct: 66  ITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRRSRNQ 125

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S ++  GD+ +++ ++T   QG  + L+ KE+++++LL       +T++M L  ++  
Sbjct: 126 VHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEVWHL 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P+  +IDV + +LR +L +       +ETV G G+ L
Sbjct: 186 NFDPQTNVIDVNMSRLRHRLEDDFATP-CLETVRGAGFRL 224


>gi|299066658|emb|CBJ37851.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Ralstonia solanacearum CMR15]
          Length = 240

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 8/212 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + F V V +      +L     FD ++LDL +    G  + R LR     TP+ +L+  
Sbjct: 27  EQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLSICRRLRGGNDQTPIIMLTAK 86

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  EL+ARI A++RR        +          GD  
Sbjct: 87  GEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRRGPAEIPGAPSETPETFAFGDFV 146

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +NL  +T++     I LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 147 LNLATRTLKKNDEEITLTTGEFSVLKVFARHPRQPLSREKLMEMARGREYEVFDRSLDVQ 206

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           I +LRK +   A    +I+TVWG GYV   + 
Sbjct: 207 ISRLRKLIEPDASNPRFIQTVWGLGYVFIPDG 238


>gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
 gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula
           stellata E-37]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I+L EDD  +A  I   L     +V     G D +    + + D  ILD  L  + G 
Sbjct: 1   MKIMLAEDDTKVADYIVAGLSEHGHSVDHVADGRDALSYLLYNDCDLAILDRMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ALR +K S PV  L+ M  ++D+V GL +G+DDY++KPF+  ELVARI AIVRR +
Sbjct: 61  SVLKALRASKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIVRRKT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+ ++   DL+++L A+T   QG  + L  KE+ ++E+L       +T+ + L  ++
Sbjct: 121 ETRAEPVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTRTLLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +   +P   +++  + +LR K+ +       I T+   GY
Sbjct: 181 NFNFDPNTTVVETHMSRLRAKV-DKPFETPLIHTIRNTGY 219


>gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
 gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum
           3TCK]
          Length = 219

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 127/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L   I   L+S  +   ++  G D +       +D I+LDLGL  + G 
Sbjct: 1   MKILVVEDEIILGEQIIDGLESNGWIAELSSDGIDALYRATSEPWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R   ++TPV ILS  + +  +V GL +GADDY++KPF   EL+AR+RA +RRS 
Sbjct: 61  TVLKSIRDENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  +I   +LS++     V  QG  + LT  E++++  L    +  +++   + H+Y 
Sbjct: 121 GNASPVIQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++R+K+ N       I+TV G GY +  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKIGND-----VIKTVRGLGYRINAN 219


>gi|46201500|ref|ZP_00208129.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 223

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  ++E   ++  F V     GEDG  L     +DA+ILDLGL  I G 
Sbjct: 1   MRVLVVEDEPQLTLALERAFEAAGFAVDKAYDGEDGWHLGDTENYDAVILDLGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R +  + PV +L+  +   +K     +GADDY++KPF  EE+V RIRA++RR+ 
Sbjct: 61  TVLSRWRESGRAMPVMVLTARARWAEKSLAFNAGADDYVTKPFEMEEVVTRIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA   I  G L+++     V   G  I LT +E++++  L+  ++  +++   + H+YD
Sbjct: 121 GHAAPEITCGPLAIDTMGGRVSRAGLPIALTAQEFRILSYLAHHQSRVISRSELVEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P+  ++DV + ++R+KL         I T+ G+G+ +    
Sbjct: 181 RDADPDSNVLDVLVARIRRKLGVD-----VIHTLRGQGWRMEAPG 220


>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 5/226 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+++D++ +   + L+L+ E F+V     G + ++L +   FD  ILD+ +  + 
Sbjct: 1   MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLD 59

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVL  L   +   PV +LS  +   D+V GL+ GADDYI+KPF   ELVAR+++++RR
Sbjct: 60  GMEVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRR 119

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +              + ++   +T       + LT  E+ ++  L+       ++E  + 
Sbjct: 120 AGSGPGMGGAEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      EV+ +D  +  LR+KL  A    + I+TVWG GY  R
Sbjct: 180 RIWGWDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYKWR 225


>gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
 gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
          Length = 240

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   + + G+  +   +      I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+L     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK +   +E  L      V     G       +   +D ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDKLVGSGVEDGLIEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA+VRRS+
Sbjct: 61  DLLGWIRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I  G+L+V+    TV     RI LT +E  ++  L   +   L++    + LY 
Sbjct: 121 GRGTDTIEYGELTVDPALMTVVRGAERIALTSRECALLVELLANQGRPLSRAQLQDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   I+V +  LRKKL     G   I T+ G GYV+ +
Sbjct: 181 WNEEIESNAIEVHVSNLRKKL-----GAELIRTIRGVGYVVEK 218


>gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17]
 gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17]
          Length = 221

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  +++  +  +   V             K   ++ I+LDL L D  GF
Sbjct: 1   MRVLLVEDTTGLGEAVQDQISEDGHAVDWVQSLAFAETSVKTTPYNLILLDLMLPDGHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+ LR    +TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ A+ RR R
Sbjct: 61  DFLKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVAAVARRYR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  GDL V+L  + ++  G  + LT +E+ + E    R    L++    + LY+
Sbjct: 121 GNPNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQLEDRLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E   I+V+I ++RKKL + A     I TV G GY L  N
Sbjct: 181 FGAEIESNTIEVYISRMRKKLGHDA-----IVTVRGMGYRLEPN 219


>gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
 gi|300074254|gb|ADJ63653.1| oxidative stress resistance two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 8/214 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV   +  +   +L     +D ++LDL L    G  + R LR A   TP+ +L+ 
Sbjct: 38  TEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTA 97

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
                D++ GL+ GADDY+ KPFN  ELVARI A++RR        +          GD 
Sbjct: 98  KGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDF 157

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++L  +T++  G  I LT  E+ ++++ +      L++E  +        E   + +DV
Sbjct: 158 ILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDV 217

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            I +LRK +        YI+TVWG GYV     K
Sbjct: 218 QISRLRKLIEPDPANPLYIQTVWGLGYVFIPEGK 251


>gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans
           LB400]
 gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family
           [Burkholderia xenovorans LB400]
          Length = 266

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 123/230 (53%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 7   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 67  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 127 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +E     I+V++ +LRKK+  +      I TV G GY L + A   + 
Sbjct: 187 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEKAAAPASA 233


>gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O157:H7 EDL933]
 gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli
           O157:H7 str. EDL933]
          Length = 219

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D VRGL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +    +V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 KQ--IQYHGIIWDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        N+++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRWVDT 223


>gi|189425983|ref|YP_001953160.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422242|gb|ACD96640.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 233

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +A  I+  L+  +F V   D     +E  +     A+ILDLGL D  G E+
Sbjct: 5   ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDKSGEEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + L+    S PV +L+  SS E+++ G   GADDY+ KP +  ELV R++A+++R  G 
Sbjct: 65  CQELKDLG-SFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDGA 123

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                      G L ++    TV  +G    +T  E+++++ L+     T +++  ++  
Sbjct: 124 GAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVSKA 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   + +D  I  LR+K+   +    +I+TV+G GY+ 
Sbjct: 184 LGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLF 226


>gi|126699276|ref|YP_001088173.1| two-component response regulator [Clostridium difficile 630]
 gi|255100802|ref|ZP_05329779.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|115250713|emb|CAJ68537.1| Two-component response regulator [Clostridium difficile]
          Length = 241

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+I+D+  +   +E +LK E  N +Y     ++G+EL K    D I+LD+ L D  G+
Sbjct: 4   RVLIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIMLPDGEGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    S P+  LS  +   DK+ GL  G DDY++KPF+ +E+  R++A +RR  
Sbjct: 64  DICKEIRKTSNS-PIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                         + + +I  G   +N     +   G  I L+ KE +++ L +  +N 
Sbjct: 123 YFSDAQNESKNLNNNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++KE   + ++          I V I K+R+KL +      YI T+ G GY L
Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|148652516|ref|YP_001279609.1| two component heavy metal response transcriptional regulator
           [Psychrobacter sp. PRwf-1]
 gi|148571600|gb|ABQ93659.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter sp. PRwf-1]
          Length = 244

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K L   I+  L    F V     G DG       +F  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEKNLGEYIKKGLTEAGFIVDHHMTGLDGYHALMTEDFSVVVMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI++++RR+ 
Sbjct: 61  ELIQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKSLLRRAN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 S+I   DL +++  +TV      I LT KE+ +++L   R+   L + +  + +
Sbjct: 121 QSDYKSSVIHMADLKMDIAKRTVYRGDTNIKLTAKEFALLQLFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   + +  +IDV I +LR K+ +       I TV G GY L  
Sbjct: 181 WDINFDSDTNVIDVAIRRLRIKI-DDGFDIKLIHTVRGMGYKLEP 224


>gi|312792374|ref|YP_004025297.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179514|gb|ADQ39684.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 221

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 128/223 (57%), Gaps = 8/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E FNV  +   +D +E     + D IILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFNVINSYTAKDALEKL--NDADLIILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LKE--ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ + G  + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E + +DV I +LR+KL +    K  I+TVWG GY L E 
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSEE 219


>gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 270

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 52  MRILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 111

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 112 DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       +    + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 232 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 267


>gi|323699757|ref|ZP_08111669.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323459689|gb|EGB15554.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 240

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+I+DD+ L   +   + +    V     G DG+++     FDAI+LD+ L DI G  
Sbjct: 9   HVLMIDDDENLCGVVSDFMGAYGLEVQYALDGNDGLQMALSSAFDAILLDMMLPDIDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR      PV I+S  + + DK+ GL+ GADDY+ K F   EL+AR+RA++RRSR 
Sbjct: 69  ILKQLRAKAPKLPVIIISAQTDVSDKIVGLEMGADDYVPKTFAPRELLARLRAVLRRSRT 128

Query: 122 HAQSLIV----------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            A+ ++              L ++      ++ G  + L+  E+Q++  ++       ++
Sbjct: 129 SAEDMVEEESCDGETVVIHGLMLDSTRMQADLNGKTLDLSTIEFQLLYRMASHPGRVFSR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  ++ ++        + +D+ I  LR+KL ++    +Y+ TV G GY+ 
Sbjct: 189 DQLISDIFGREYCIFDRSVDMHISSLRRKLGDSPRTPSYLRTVRGSGYMF 238


>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 226

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+ +DD  +   +   L  E +NV     GE+  +L +       I+D+ +    
Sbjct: 1   MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+ R +R      PV +L+    + DK +G  +G DDY++KPF   EL+ RI+A++RR
Sbjct: 61  GWELCREIREF-YDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  ++ +IV  D  ++  +  V+V+   IHL  KE++++  L+   +   T++  L  +
Sbjct: 120 YQMVSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + G  E + + IDV I +LR+K +        I TV G GY L 
Sbjct: 180 WGGDTESDSRTIDVHIKRLREKFTEKT-NDFVISTVRGLGYKLE 222


>gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804]
 gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii]
          Length = 232

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ LA  ++  L   N+ V +   G  G+ L +  ++D I+LD+ L    GF 
Sbjct: 5   KILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVMLPGRDGFS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      P+ +L+    +ED+VRGLQ GADDY++KPF   EL+AR+ A+ RR   
Sbjct: 65  VLAELR-KGDRVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQSN 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + Q+++  GDL ++L  +     G R+ LT KE+ ++ LL  ++   L++     
Sbjct: 124 SVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLAE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++D        +++V + +LR K+ +       + TV G GYVL  
Sbjct: 184 QVWDINFNSNTNVVEVAVRRLRGKV-DDPFPTKLLHTVRGMGYVLEP 229


>gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 229

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR      PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  GD+ ++ +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +  E   ++V I  LRKK  +       I  + G GY+
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSD-----LIRNIRGVGYI 215


>gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 231

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     GE+G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V + G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + + +  LR+KL +      +I T  G GY L   
Sbjct: 186 PTHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229


>gi|15596996|ref|NP_250490.1| two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|107101231|ref|ZP_01365149.1| hypothetical protein PaerPA_01002264 [Pseudomonas aeruginosa PACS2]
 gi|218892248|ref|YP_002441115.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234893|ref|ZP_04928216.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|254240192|ref|ZP_04933514.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|9947782|gb|AAG05188.1|AE004606_2 two-component response regulator, ParR [Pseudomonas aeruginosa
           PAO1]
 gi|126166824|gb|EAZ52335.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719]
 gi|126193570|gb|EAZ57633.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192]
 gi|218772474|emb|CAW28256.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
          Length = 235

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V     G+        ++   ++LDL L    G +
Sbjct: 8   KVLLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLMLPGQNGLQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ IL+      D + GL+SGADDY+ KP     L+AR+RA++RR   
Sbjct: 68  VCREIRRV-ANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAP 126

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +  G L+++   +  E++G  I LT  E++++ LL+ +    L+++  LN + 
Sbjct: 127 LPASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +   + +DV I KLR KL +       I+TVWG+GY+   
Sbjct: 187 GIGFDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFNP 230


>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
 gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
           YIT 11841]
          Length = 230

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED++ +A  I   L+     V V   G     + +   FD ++LD+ +  + G E
Sbjct: 8   KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDGLE 67

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R      TPV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR +
Sbjct: 68  VCRQFRLKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRGK 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++ D +        I LT KEY+++E     +   L++   L  ++D
Sbjct: 128 ERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLTLLKDVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+         I T+ G GY++
Sbjct: 188 KNFDTNTNVVDVYVNYLRNKIDREF-EVKLIRTIVGMGYIM 227


>gi|315169939|gb|EFU13956.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 235

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 120/235 (51%), Gaps = 16/235 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDIPGFEV 62
           +IED+++++  +++   +E +     D G++G+   L    ++D I LDL L  + G  V
Sbjct: 1   MIEDNESVSEMMQMFFLNEGWEATFKDDGKEGLTTFLASPEKWDMITLDLNLPSMDGMAV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   L+AR++A+ RR+   
Sbjct: 61  CREIRKVSANVPIIMLTARDSESDQVIGLEMGADDYVTKPFSPLTLIARMKALHRRAEVA 120

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
             +            ++T    +N   +   +    I  LT KE+ ++  L+ +     +
Sbjct: 121 EAAHDTSENTDETFDVITDHFKMNTKTRETYLDNQLIEGLTPKEFDLLYTLAKKPRQVFS 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E  L  ++D +   + + +D  I KLR+K+     G   I+TVWG GY   ++ 
Sbjct: 181 REQLLELVWDYQYFGDERTVDAHIKKLRQKIEKV--GPQVIQTVWGVGYKFDDSG 233


>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
 gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
          Length = 232

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+D+  +   +   L++  +    +  G DG    K  + D I+LD  L +I G E
Sbjct: 7   KVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VL+ +R        PV +L+  +  +DKV GL+ GADDYI+KPF+ +EL+ARI +++RR 
Sbjct: 67  VLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMRRY 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G     +  G+L +NL    V++   ++ LT KE+++++LL   +   L++   L+
Sbjct: 127 GMNTGKESEELTAGNLKLNLTKHEVKINDKKVDLTLKEFELLKLLLKNRGKVLSRNFLLD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E + +DV I  LRKKL  A   + YIET+ G GY +
Sbjct: 187 EIWGYEYYGETRTVDVHIRYLRKKLEEAGADEKYIETIRGVGYKI 231


>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
 gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
           intermedia ATCC 29909]
          Length = 232

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNVDQGAPTLDVDCLQLNPGRQEATFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLMV 229


>gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
 gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family
           [Methylobacter tundripaludum SV96]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 136/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   I+     + F V     G+DG  + K Y  DA ++D+GL D  G 
Sbjct: 1   MRILVVEDEVKLCEQIQQFFADKGFAVDTAHTGQDGYYMGKEYPIDAAVIDIGLPDFSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR  K++ P+ IL+  S  ++KV GL++GADDY+ KPF+ EEL ARI A++RRS 
Sbjct: 61  ELIKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   ++ ++  A+ V V G +  LT  EY+++E L  RK   ++K +   H+YD
Sbjct: 121 GVAHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +++VFI +LRKKL    G +  IET+ GRGY++
Sbjct: 181 EDFDRDSNVLEVFIGRLRKKLDPD-GTRKPIETLRGRGYLI 220


>gi|307128989|ref|YP_003881005.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
 gi|306526518|gb|ADM96448.1| DNA-binding heavy metal response regulator [Dickeya dadantii 3937]
          Length = 223

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V +   G DG+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVIEDDAGTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHGYDAIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++ GL+ GADDY+ KPF+  ELV R+R ++RR  
Sbjct: 61  QIIEMLR-KKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRMRTLLRRGA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  V  DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYVVADLQLDVLRRKATRQDTAIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV + +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKI-DKPFDVKLIHTVRGIGYV 218


>gi|261344617|ref|ZP_05972261.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
 gi|282567532|gb|EFB73067.1| transcriptional activator protein Irlr [Providencia rustigianii DSM
           4541]
          Length = 223

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 122/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED       ++  L+   F V V   G DG+       +  +ILD+ L  + G+
Sbjct: 1   MKILLIEDHLKTQGWVKNGLEEAGFLVDVATDGRDGLYFALENNYQLVILDIMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR +K + PV  L+   +++D+++GL+ GA+DY+ KPF+  EL+AR++  ++  +
Sbjct: 61  DILKVLRTSK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVHQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + ++    DL ++L    VE  G +I LT +E+ ++    L  +  L + +  + ++ 
Sbjct: 120 PTSTNM-TIADLKIDLVRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  IIDV I +LRKK+ +       IET+ G GY L
Sbjct: 179 IDFDSDTNIIDVAIRRLRKKI-DDGFDVKLIETIRGMGYRL 218


>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
 gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
           16841]
          Length = 228

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+K +  ++++ L ++ + V+    G + +E+ K  +   +++D+ + ++ G  
Sbjct: 3   RILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIMMPEMDGIT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  +R    + PV +L+  S   DKV GL  GADDY++KPFN  EL AR+++ +RR   
Sbjct: 63  AMLKIREVS-NVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRRYMK 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     IV G + +N   K V + G ++ LT  EY +++LL        +      
Sbjct: 122 LGGGTVRPDTIVIGGIELNDVTKEVTLDGDKVQLTRTEYDILKLLMQHPGQVFSPNEIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++         + V I  LR+K+        +++ VWGRGY + 
Sbjct: 182 KVWNDNPFRNENTVAVHIRHLREKVEYNPAEPRHLKVVWGRGYKME 227


>gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2]
 gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1]
 gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
 gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1]
 gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           C3719]
 gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192]
 gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           LESB58]
 gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa
           39016]
          Length = 225

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    S P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E
Sbjct: 181 DDEERDANVIEVLVGRLRRKLE-ACGGFKPIDTVRGQGYLFTE 222


>gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 221

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK+E F V  +   +  +      E D IILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNEGFEVINSYTAKGALSKL--NEADLIILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RRS+  
Sbjct: 62  LKE--ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRSKNF 119

Query: 123 AQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ ++ G + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLDGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E + +DV I +LR+KL +    K  I+TVWG GY L E+ +
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSEDKE 221


>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
 gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
           [Chlorobium phaeobacteroides BS1]
          Length = 236

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  ++  L+  ++   + + GE+ + L      D ++LD+ L  I GFEV
Sbjct: 6   ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65

Query: 63  LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R LR        P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R +   + ++V   L V++   +V++ G  I LT  E++++ +L  R+    ++E  L+ 
Sbjct: 126 RGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D       + ID  I +LR+KL        YI+TV G GY L E+ +
Sbjct: 186 VWDVDKTINTRTIDTHITRLREKLGETG---KYIKTVRGLGYKLEESGE 231


>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
 gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
           30120]
          Length = 232

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLMV 229


>gi|169836123|ref|ZP_02869311.1| two-component response regulator [candidate division TM7
           single-cell isolate TM7a]
          Length = 520

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D++ + + +  +L    + N       ++ ++  K  E D  ILD+ L D  GFE
Sbjct: 11  ILIVDDEQEILNMVVSILADGGYKNTRTARNVKEALKCAKEVEPDFAILDVMLPDGNGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR      P+  L+     EDK +G   GADDYI KPF  +EL+ RI AI+RR+  
Sbjct: 71  LLEKLR-KNSDYPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRRTYK 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++      ++     +   G +I LT KEY++++ L       +T +     ++  
Sbjct: 130 EENFIVNLNGCQIDFSRGEIVKDGEKISLTAKEYELLKTLYRNAGRIVTIDSLCEAIWGE 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +   I ++R+K+         + T+ G GY L
Sbjct: 190 NAYVYSNSLMTHIRRIREKIEKEPSHPVSLITMKGLGYKL 229


>gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046]
 gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89]
 gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536]
 gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC
           O1]
 gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC
           8739]
 gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           SMS-3-5]
 gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638]
 gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88]
 gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a]
 gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39]
 gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           UMN026]
 gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str.
           REL606]
 gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp.
           4_1_40B]
 gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736]
 gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046]
 gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89]
 gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli
           536]
 gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1]
 gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family
           [Escherichia coli ATCC 8739]
 gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5]
 gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638]
 gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11]
 gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012]
 gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1]
 gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli S88]
 gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli IAI39]
 gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli ED1a]
 gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli UMN026]
 gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82]
 gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA]
 gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)]
 gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli B str. REL606]
 gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli BL21(DE3)]
 gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042]
 gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412]
 gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354]
 gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034]
 gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302]
 gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS
           196-1]
 gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS
           200-1]
 gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS
           175-1]
 gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS
           198-1]
 gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS
           69-1]
 gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS
           115-1]
 gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS
           116-1]
 gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS
           21-1]
 gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS
           187-1]
 gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS
           146-1]
 gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101]
 gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146]
 gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC
           H10407]
 gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70]
 gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS
           110-3]
 gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS
           16-3]
 gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431]
 gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae
           CDC 74-1112]
 gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC
           9905]
 gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli
           WV_060327]
 gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1]
 gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia
           coli E1520]
 gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia
           coli E482]
 gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia
           coli H252]
 gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia
           coli H263]
 gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia
           coli H489]
 gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia
           coli M863]
 gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia
           coli TA007]
 gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia
           coli TW10509]
 gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS
           57-2]
 gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS
           60-1]
 gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v]
 gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli
           AA86]
 gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736]
 gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605]
 gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206]
 gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143]
 gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88]
          Length = 219

 Score =  254 bits (650), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 222

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD+ L  +++  L    + V     GE      K   F+ IILDLGL  + G  +L
Sbjct: 1   MLVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALL 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           + +R    STPV IL+   S+ED+++GL SGADDY+ KPF+  EL ARIRA+VRRS+G A
Sbjct: 61  QNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRA 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S++   +++++  A +V V    +++  +E+ +++ L       L++E  +  +Y   +
Sbjct: 121 DSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEE 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +   ++V I  LRKKL       N+I T+ G GY+  +N
Sbjct: 181 DVDSNALEVHIHNLRKKL-----NANFIRTIRGVGYMAEKN 216


>gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 240

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   + + G+  +   +      I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+L     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 225

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 214

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++++ V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
 gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacteraceae bacterium KLH11]
          Length = 229

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L +E F V     G++ + L +    D I+LD  + ++ G EV
Sbjct: 8   VLVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    S P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PATVGIRLEFDDIILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG++ + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGEDPVRTVRGAGYAL 228


>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
 gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
           [Rhodobacterales bacterium Y4I]
          Length = 229

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V     GE+ + + +    D IILD  + ++ G EV
Sbjct: 8   VLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + PV +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V    + + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSTVGVRLEFDDIVLDAETHKVSRADNPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGSDPVRTVRGAGYAL 228


>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
           [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 297

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   +  +L  E F+V   + G +  ++ +    D IILDL L    G  +
Sbjct: 67  ILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLPGEDGLSI 126

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  +   D+V GL+ GADDY+SKPF   EL+AR+RA++RR++  
Sbjct: 127 CRRMRSEG-AFPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRRTQSQ 185

Query: 123 ----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A          ++LDA+ +    G    LT  E+ ++    LR    L+++  L+ 
Sbjct: 186 PFQAASRRYSFDRFVIDLDARQLTDEDGAPATLTSAEFDLLTCFVLRPRRVLSRDQILDW 245

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +    +P  + +D+ + +LRKKL + + G   I TV   GY+L    +
Sbjct: 246 THGRTADPLDRTVDILVSRLRKKLESLSPGNTLISTVRNGGYLLTVPVR 294


>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 250

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 4/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +  ++ + L +  F+V     G   +        + ++LDLGL D+ GFE
Sbjct: 3   KILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV +LS  +   +KV  L +GADDY++KPF  +EL+AR+RA VRR   
Sbjct: 63  VLAGLR-GWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + ++      V+L AK V      +HLT  E+ ++ELL   +   ++++  L+ +
Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +    + E   + V++ +LR+KL        ++ T  G GY    +AK    
Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFEPSAKQRPA 233


>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
 gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
 gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
          Length = 223

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+K +   I   L  E F V     GE+ +E+ +    D  I+D+ +  + GFE
Sbjct: 4   KVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  L+  K   PV +L+     +DK+RG   GADDY+ KPF+  EL+AR+RA+++R   
Sbjct: 64  LVENLKEFK-DVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYSV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  ++I   ++  + D   +  Q   IHL  K+++++  L+   +   ++E  +  ++  
Sbjct: 123 NTSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I ++R+ L +  G K  + TV G GY + 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKVE 221


>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
           fragilis NCTC 9343]
 gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 224

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V + G+ G EL +   FD +ILD+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N + +    +   I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+ +    K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222


>gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator
           [Pseudonocardia dioxanivorans CB1190]
 gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family
           [Pseudonocardia dioxanivorans CB1190]
          Length = 233

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 9/234 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V +   G+  ++  +    DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A    P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRT 120

Query: 121 GHA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +   DLS++ D + V      I LT  E+ ++ELL       LT+ 
Sbjct: 121 PDEIAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHPRRVLTRA 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L  ++          ++V+I  LR+K + A G    I TV G GYVLRE+  
Sbjct: 181 QILEQVWGYDFPTTGNALEVYIGYLRRK-TEAGGEPRLIHTVRGVGYVLRESPP 233


>gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
 gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC
           29220]
          Length = 240

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDLVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +  D  L V+        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|237748706|ref|ZP_04579186.1| oxidative stress resistance two-components response regulator
           [Oxalobacter formigenes OXCC13]
 gi|229380068|gb|EEO30159.1| oxidative stress resistance two-components response regulator
           [Oxalobacter formigenes OXCC13]
          Length = 249

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 8/218 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L    F V   +  +          FD ++LDL L    G  + R LR     TP+ +L
Sbjct: 32  YLAENGFAVTTAENAQTMNRFWVRERFDLLVLDLMLPGEDGLSICRRLRGGGDQTPIIML 91

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA--------QSLIVTG 130
           +      D++ GL+ GADDY+ KPFN  EL+ARI A++RR R           Q +   G
Sbjct: 92  TAKGEDTDRIVGLEMGADDYLPKPFNPRELLARISAVLRRKRPDEVPGSPSEMQQIFNFG 151

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
           +  ++L  +T+   G  + LT  E+ +++  +      L+++  +        E   + +
Sbjct: 152 EFELDLGNRTLRKNGESVSLTTGEFAVLKAFARHARQPLSRDKLMGLAKGREYEVFDRSL 211

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           DV I +LRK +        YI+TVWG GYV   +   +
Sbjct: 212 DVQISRLRKLIEPDPSHPLYIQTVWGLGYVFIPDGASQ 249


>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
           7002]
 gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
           sp. PCC 7002]
          Length = 227

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++ L  ++  +L+ E   V + + G+ G+EL    E+D +ILD  L    G 
Sbjct: 1   MRILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRRSP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL +++  +     G  I L+ +E Q++          LT E    HL+
Sbjct: 121 GGEPPNRLRIADLELDVANQMAYRAGRAIRLSDRELQLLSYFMEHPAQLLTHEQIYQHLW 180

Query: 180 -DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            DG + P   ++   +  LR+K+         I T++G+GY   E 
Sbjct: 181 QDGDESPSSNVLAALVRLLRRKVEAKGDRP-LIHTIYGKGYYFGEQ 225


>gi|16762974|ref|NP_458591.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29144461|ref|NP_807803.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213420191|ref|ZP_03353257.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213427225|ref|ZP_03359975.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581684|ref|ZP_03363510.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213609432|ref|ZP_03369258.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213650815|ref|ZP_03380868.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854794|ref|ZP_03383034.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289828852|ref|ZP_06546595.1| DNA-binding transcriptional regulator BasR [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|25300973|pir||AD1022 two-component response regulator pmrA [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505281|emb|CAD09277.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29140099|gb|AAO71663.1| two-component response regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56540681|gb|AAV92794.1| PmrA [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 222

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +               +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ D++ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRIRQKKYTLPVLILTARDTLNDRISGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G+L++N+        G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EP    ++V I  LR K+     GK+ I TV   GY+L    +
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKV-----GKSRIRTVRRFGYMLVATEE 221


>gi|313238135|emb|CBY13233.1| unnamed protein product [Oikopleura dioica]
          Length = 241

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD+ LA  I   L    + V +   G DG+       + A+ILD+ L  + GF 
Sbjct: 8   KLLVIDDDRKLAGLIRDYLTPMGYEVEMRHTGPDGLAEAVEGNYQAVILDVMLPGMDGFG 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  K   PV +L+ +    D++ GL+ GADDY+ K F+  EL+AR+RA+ RR+R 
Sbjct: 68  VLRELR-KKSDVPVLMLTALGEEADRIVGLEIGADDYLPKTFSSRELLARLRAVTRRTRI 126

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +V G L +  +  TV +    + LT  E+ ++  L   K    T+E+ +  
Sbjct: 127 REDAGAVRELVAGPLRLCEETHTVILDDAPVDLTALEFAILAALLKSKGRVKTREILIEE 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R +   + IDV +  LR+KL + A    +I T+ G GY L E 
Sbjct: 187 VSARRFDVFDRSIDVHVSSLRRKLGDDAKSPRFIRTIRGVGYSLTEP 233


>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 232

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           RIL++ED+  +A  +   L+   F       G   I         D  +LD+ L  + G 
Sbjct: 7   RILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIMLPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R  +   P+ +L+      D++ GL+ GADDYI KPF+  E+VAR+R ++RRS 
Sbjct: 67  EVLRQARR-RTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                      L ++     V ++G  + LT +E+++++ L+       ++   L+  YD
Sbjct: 126 ARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAK 226
              +   + ID  I  LR+KL         +I +V+G G+ L    +
Sbjct: 186 DTLDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLEPPQE 232


>gi|255655689|ref|ZP_05401098.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451695|ref|ZP_06893427.1| response regulator [Clostridium difficile NAP08]
 gi|296878939|ref|ZP_06902938.1| response regulator [Clostridium difficile NAP07]
 gi|296259458|gb|EFH06321.1| response regulator [Clostridium difficile NAP08]
 gi|296430052|gb|EFH15900.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+I+D+  +   +E +LK E   N+Y     ++G+E+ K    D IILD+ L D  G+
Sbjct: 4   RVLIIDDEVEILKLLETVLKKEGLSNIYTAKTRKEGLEVFKNINPDLIILDIMLPDGEGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ + +R    S P+  LS  +   DK+ GL  G DDY++KPF+ +E+  R++A +RR  
Sbjct: 64  DICKEIRKTSNS-PIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      S  + +  I  G   +N     +   G  I L+ KE +++ L +  +N 
Sbjct: 123 YFSDSQNENTDSDNNEEKTISFGPYILNESRAELIKDGKSIGLSAKELKILSLFANNQNQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++KE   + ++          I V I K+R+KL +      YI T+ G GY L
Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
 gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
           L48]
          Length = 231

 Score =  254 bits (650), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGGEGLTQAALNKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R++   
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQAPQV 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S    G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 GSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + + +  LR+KL +      +I T  G GY L   +
Sbjct: 186 PTHVDDTHYLRIVVGHLRQKLGDDPTAPRFIVTEAGVGYRLVAPS 230


>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 231

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++ ED+ AL+  ++  L+ E + V V   G++ + +    + D ++ D  +  + G EV
Sbjct: 7   IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR      + P+ +L+  S   D++RGL +GADDY+ KPF+  ELVARIRA++RR R
Sbjct: 67  TRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRIR 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G ++  +  G++ ++  +  V+  G  +HL   EY++++ L        ++E  L+ ++
Sbjct: 127 PGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLDAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L+      + I TV   GY L
Sbjct: 187 GNDVYVEARTVDVHIGRLRKALNADTDY-DPIRTVRSAGYSL 227


>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 225

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR+KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLREKLRKVNFPIDHHLKTVYGVGYRWVDT 223


>gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
 gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas perforans 91-118]
          Length = 227

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  LA  +   L +  ++      G   +   +  + D ++LDL L +  G +
Sbjct: 9   HVLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRGGLD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR R 
Sbjct: 69  ICRDLRKES-AVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRH 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G L ++ DA    V G  + LT  E++++  L+       ++E  +  LY  
Sbjct: 128 DPHGAPAPG-LHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + +D  +  LR+KL   AGG++++ +V+G GY    
Sbjct: 187 HRIVTDRTVDSHVKNLRRKL-ADAGGEDWVRSVYGAGYRFEP 227


>gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13]
 gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 229

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSKGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     +   I+V I  LR K++      +YI+T+WG G+ +
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228


>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
 gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
          Length = 239

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++++A  ++  L+ E++ V   + G+  ++     +   I+LD  L    G  
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +S  D    L  G DDY++KPF  EEL+ARIR ++RR   
Sbjct: 67  VLRRIRKQS-DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q        +  G L V+L          +I+LT KE+ +I  L        +++  L
Sbjct: 126 MRQQNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      +   +DV+I  +R K+ N    K  I+T+ G GY LR+
Sbjct: 186 DTVWGYDFVGQTNTVDVYIRTIRNKIGNPY--KKIIKTMRGLGYCLRK 231


>gi|295402179|ref|ZP_06812137.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111459|ref|YP_003989775.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
 gi|294975770|gb|EFG51390.1| two component transcriptional regulator, winged helix family
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311216560|gb|ADP75164.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y4.1MC1]
          Length = 222

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL EDD  L   I  MLK E   V     G+D     K   +D +ILD  +    G 
Sbjct: 1   MYILLAEDDTRLGKLIVYMLKKEKHTVDWVQDGDDAYYFAKHTHYDLLILDWMMPSKEGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           EV +ALR    +  + +L+   ++ED+V GL  GADDY+ KPF   EL ARIRA+ RR +
Sbjct: 61  EVCKALRKDGFNGAILMLTAKDAVEDRVAGLDCGADDYVVKPFEFSELFARIRALSRRIA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      +  G+LS+NL+  +++    +I LT +E+Q++EL     N  L +E+ +  ++
Sbjct: 121 QPFQAEELSFGNLSLNLNEYSIKKGNKKIQLTNREFQLMELFMRHPNQILPRELIIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     ID FI  LRKKL +       I+ + G GY L + 
Sbjct: 181 GLDADISSNNIDSFIRLLRKKLGDDGT---LIQNIRGVGYKLSDE 222


>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 384

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I + L  E + VY    G+D +EL K    DA+ILD  L DI G ++
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   I+  + +++G     D+V GL++GADDY+ KPFN  EL+AR+ A +RR    
Sbjct: 226 CRRLREL-INPVIIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQTSS 284

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  ++   D+++    +        + LT  E+ ++ L        L KE+ L  ++  
Sbjct: 285 PEKEVLTYADITIWPTRREARRGQLLLLLTPTEFDLLLLFMRHPRQVLPKEIILQQIWGH 344

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               ++ I++V+I  LR+KL       + I TV G GY+  + 
Sbjct: 345 NFTGDLNIVEVYIGYLRRKLQK----PSLIHTVRGVGYLFEQQ 383


>gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family
           [Edwardsiella tarda EIB202]
 gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60]
          Length = 243

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  L   +   L +  +  +    G++ +   + +  D I+LDL L  + G  
Sbjct: 17  RVLIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCDLILLDLMLPGVDGLT 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR  G
Sbjct: 77  LCREIRRTS-EVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC-G 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +L     L ++        +   + LT  E+++++ L+ +  + L++E  LNHLYD 
Sbjct: 135 LQDTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQLLNHLYDD 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  I  LR+KL    G +  I +V+G GY   
Sbjct: 195 YRVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 236

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  I   L + N++V     G++ +++    + D ++LD+ L    GFEV
Sbjct: 10  ILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTKPDLVLLDIMLPGKDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            + +R +  + P+ +++      D+V GL+ GA+DYI+KP     LVARI+++++ +   
Sbjct: 70  CKEVRASYPN-PILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLKNTAAA 128

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    S I  G LS++  A++V V G  + L+  EY +  +L+      +++E  +  +
Sbjct: 129 DKSDVASTINIGGLSIDNTARSVHVNGVPLSLSSSEYNVFWVLANNAGEPISRENLIKAI 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     + ID+ + +LRKK+ + +     I TVWG+GY+L
Sbjct: 189 RKIQYNGYDRSIDIVVSRLRKKIGDDSSAPTRIVTVWGKGYML 231


>gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 227

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  LA  +   L +  ++      G   +   +  + D ++LDL L +  G +
Sbjct: 9   HVLIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRGGLD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR R 
Sbjct: 69  ICRDLRNES-AVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRH 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G L ++ DA    V G  + LT  E++++  L+       ++E  +  LY  
Sbjct: 128 DPHGAPAPG-LQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + +D  +  LR+KL   AGG++++ +V+G GY    
Sbjct: 187 HRIVTDRTVDSHVKNLRRKL-ADAGGEDWVRSVYGAGYRFEP 227


>gi|83745711|ref|ZP_00942769.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
 gi|83727788|gb|EAP74908.1| Hypothetical Protein RRSL_04779 [Ralstonia solanacearum UW551]
          Length = 288

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 17/246 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAI 48
           MR+LL+EDD  +  ++   L+ + F +     GE  ++                  FD +
Sbjct: 43  MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAVGAPGAAAAAAESSASMFDLM 102

Query: 49  ILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           +LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL
Sbjct: 103 LLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQEL 162

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R    
Sbjct: 163 AARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGKV 222

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+       
Sbjct: 223 WSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPTP 277

Query: 229 TCEYLE 234
             E  +
Sbjct: 278 PAEPTD 283


>gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 217

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 9/220 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   ++L L            G+  I   +   +D IILD+ L ++ GFEV
Sbjct: 4   ILIVEDEVAINDLVKLNLHLVGHQCTSVFEGKSAIFAIQRESYDLIILDIMLPELDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +      TP   L+  +S++ +++G   GADDYI+KPF   EL+AR+ AI+RR++  
Sbjct: 64  IKQV----NQTPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQK- 118

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A       ++ ++ D+  V   G  +  T KEY ++E+L   +N  L++E  L  ++   
Sbjct: 119 ASKYFEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWGYD 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E + + +DV I KLRKKL      +  I+TV+  GY L 
Sbjct: 179 FEGDTRTVDVHIQKLRKKL----SWEGVIKTVYKLGYRLE 214


>gi|282895678|ref|ZP_06303803.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9]
 gi|281199372|gb|EFA74237.1| hypothetical protein CRD_00302 [Raphidiopsis brookii D9]
          Length = 237

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLTDIPG 59
           IL++EDD  L  S+   L  E + V     GE      +      +D II+D+ L  + G
Sbjct: 4   ILVVEDDYYLTESLTEALTMERYEVECVKDGEAAWRRLQDLPVVNYDLIIMDITLPKLDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR    + P+ +L+   +I DK+ GL +GAD Y+ KPFN +EL+A++RA++RR 
Sbjct: 64  IRLCQKLRDHGCTLPILMLTARDTISDKITGLDAGADSYMVKPFNLQELMAQVRALLRRG 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +    + +  GDLS++     V      IHLT KE+ ++E L        T+   ++ ++
Sbjct: 124 KPVINNTLTWGDLSLDFSKYEVLYGRKPIHLTPKEFALMEALLRCNGRISTRSSLIDQIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                PE + I  +I  LR KL N    K+ IET+ G GY L+
Sbjct: 184 ASESPPEEETIKTYIRNLRAKLINVGAPKDLIETIHGVGYRLK 226


>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
 gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
           [Cyanobium sp. PCC 7001]
          Length = 240

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 113/226 (50%), Gaps = 14/226 (6%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +D+ A+   + + L+   + V   + GE+ + L    + D ++LD+ L  + GF V R L
Sbjct: 2   DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAVCRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--------- 117
           R      P+  LS + +I ++V GL  GADDY+ KPF+ +EL ARI  I+R         
Sbjct: 62  RAESC-VPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSASA 120

Query: 118 --RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             R +     ++  GDL V+ + + V   G RI LT  E+ ++ELL       + +   L
Sbjct: 121 EPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAEIL 180

Query: 176 NHLYDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             L+    R   +++++DV++ +LR KL         I TV G GY
Sbjct: 181 EQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 226


>gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 214

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + ++  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|282897775|ref|ZP_06305774.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
 gi|281197454|gb|EFA72351.1| Two component Transcriptional regulator, Winged helix family
           [Raphidiopsis brookii D9]
          Length = 259

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 51/224 (22%), Positives = 113/224 (50%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD ++ + +   L  + +       G+  + L + +    +ILD  L DI G++
Sbjct: 31  KIMVVDDDFSVRNLVHRFLSRK-YKTETAADGKSAMTLFEQFNPSLVILDWNLPDINGYK 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +   + +  V +L+  +   DK++ L  GADD+++KPF+  E+  R+ A++RR R 
Sbjct: 90  LCQDM-QNRTNVLVLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRVNALLRRIRY 148

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   ++   L++N + + V +    + LT  E+ ++  L+       ++   +  +
Sbjct: 149 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 208

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + +++DV I +LRKK+   +    +I+TV G GY   
Sbjct: 209 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 252


>gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
 gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
           carboxidovorans OM5]
          Length = 231

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L +E + +     GE+   L    + D I+LDLGL DI G +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGLPDISGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L   R   +  P+ +LS  +     V+ L+ GADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHKLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + +   GDLSV+L  + V+V    + L+ KEY+++ +L       +T +  L H++
Sbjct: 127 QQGERPIFQVGDLSVDLVKRIVKVADKEVKLSPKEYEILRVLVQHAGKVITHQHILKHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            G  + +   + V++ +LR+K+        YI T  G GY LRE  +
Sbjct: 187 GGSTDVQ--YLRVYVRQLRQKIEATPDQPQYILTETGVGYRLREPEQ 231


>gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 225

 Score =  254 bits (649), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 126/223 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA ++   L  + + V V   GE G    K  ++D ++LD+ L ++ G 
Sbjct: 1   MRILLVEDDVRLAETLAEALTDQRYMVDVVTDGEAGWNQAKMLDYDLLLLDVMLPELDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR    S PV +L+   ++ DK+ GL +GADDY+ KP + +EL ARIRA++RR  
Sbjct: 61  SLCHRLRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++  G+L +N     V    + +HLT KEY ++ELL       L++ + + H++ 
Sbjct: 121 VSSPPILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               PE   + V +  LR+KL  A   +++IETV G GY L++
Sbjct: 181 LESPPEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRLKQ 223


>gi|304413239|ref|ZP_07394712.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
 gi|304284082|gb|EFL92475.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Candidatus Regiella
           insecticola LSR1]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   ++  L  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVDDDVRLRALLDRYLTEQGFQVRSVANAEQMDRLLARESFHLLVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R L       P+ I++  S   D+V GL+ GADDY+SKPFN  EL+ARIRA++RR   
Sbjct: 66  ICRRLHNQNNPIPIIIVTAKSEDVDRVVGLEIGADDYMSKPFNPRELLARIRAVLRRQMN 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +    +++I  G   +NL  + +      + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAIISFGQFKLNLGTREMFRDDDLMSLTSGEFAVLKALVSHPRDPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        Y++TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMIEVEPARPRYLQTVWGLGYVFVPDG 236


>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
           93-146]
 gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Edwardsiella ictaluri 93-146]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L  E F V V   GE  + +      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDA-SIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q         ++    L +N   +     G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNSDSGAPILQVDRLQLNPGRQEASFDGQPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERQDGQPWFKTLRGRGYLMV 229


>gi|160947044|gb|ABX54691.1| response regulator [Enterococcus faecalis]
          Length = 231

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D++ +A+ I   L++E F V     GED +           ILD+ L DI GF 
Sbjct: 4   RIVVVDDEQEIANLITTFLENEGFQVTTFYKGEDFLTYIARESISLAILDVMLPDIDGFR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV +L+      DK+ GL  GADDYI+KPFN  E+VAR++  +RR + 
Sbjct: 64  ILQEIRKNFY-FPVLMLTAKEENMDKIMGLTLGADDYITKPFNPIEVVARVKTQLRRVQK 122

Query: 122 HAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           + +              L++  D+  V +    I +T  E+ ++  L   +   ++ E  
Sbjct: 123 YNRKVENESVIEFNKDGLTLKKDSHQVFLFDKEITVTPIEFNLLLYLFEHQGVVVSSEEL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++  +       I   I +LR+KL        +I+TVWG GY++ +
Sbjct: 183 FEAVWKEKYLENNNTIMAHIARLREKLDEQPRKPKFIKTVWGVGYIIEK 231


>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
 gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   IE  LK E   V + + GE+ +   K    D ++LD+ +  + G+ V
Sbjct: 5   VLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPLMDGWTV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+     ED++ G Q G D Y++KP + + LVA+I+A++RR+   
Sbjct: 65  CRELRKIS-NVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +       L +N +   V++ G  I+L+ KE++ +  L   K+  L++E  L+ ++
Sbjct: 124 EINQVKDNTYDGLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDAIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +++ +D  + +LR+KL   +     I TV G GY   
Sbjct: 184 GIDYYGDLRTVDTHVKRLREKLGVKSY---LITTVRGVGYKFE 223


>gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis
           BI429]
 gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family
           [Thermosipho melanesiensis BI429]
          Length = 218

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/219 (36%), Positives = 126/219 (57%), Gaps = 6/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ L   +EL    EN  V   + GED + + + ++ D +ILD+ L DI G 
Sbjct: 1   MKILIVEDDEKLRRLLELEYNHENCEVKTCEFGEDALLIYEEFKPDVVILDIMLPDIDGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR    S  + +L+ +S  +DK+ G +SGADDYI KPF+ EEL AR +A+ RR +
Sbjct: 61  EVAKKLRKLDPSAGIIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARR-K 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     I  G+L +N+  + V  +   I+L+  E+ ++  L    +  ++KE  L+ ++ 
Sbjct: 120 GVLDEEINLGELKINILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E    I++V+I  LRKK+S+       I+TV G GY
Sbjct: 180 FSYEGSENIVEVYINYLRKKISSD-----LIKTVRGIGY 213


>gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+     G  G+ L    ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   ++ R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + G  + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SVPVTTDLVVGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|83942324|ref|ZP_00954785.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
 gi|83953543|ref|ZP_00962264.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83841488|gb|EAP80657.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1]
 gi|83846417|gb|EAP84293.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 153/225 (68%), Positives = 183/225 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD   + SIELML   N N Y TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRILLVEDDPTTSKSIELMLTHANLNTYTTDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR++KI TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLSKIQTPILILSGSDDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I  G +SVNLDAK+V V    +HLTGKEYQM ELLSLRK +TLTKEMFLNHLY 
Sbjct: 121 GHSQSVINVGRVSVNLDAKSVTVGDKPVHLTGKEYQMFELLSLRKGSTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G DEPE+KIIDVFICKLRKKLSNA GG+NYIETVWGRGYVLR+ A
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATGGENYIETVWGRGYVLRDPA 225


>gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 247

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 17/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIP 58
            +L+++D+  +   +   L+++ F V     G + +           D  +LD+GL D+ 
Sbjct: 4   HVLVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLPDLD 63

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVLR +R       V +++  S   DK+ GL  GADDYI+KPF+  E+VAR++ ++RR
Sbjct: 64  GLEVLRRVRAQS-DLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTVLRR 122

Query: 119 SR-------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
                              +++    L+++ D + V      + L+  E+ ++   +   
Sbjct: 123 RHEAGAPDVGPDVDPATVANILRFEGLTIDEDRREVTTASDPVTLSTLEFDLLVAFAEAP 182

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++   L  ++      + ++IDV I  LRK L++ A     I TV G GY  
Sbjct: 183 GRVFSRAQLLEKVWGYDFYGDERVIDVHIRSLRKALADDASSPRVIGTVRGVGYKF 238


>gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
 gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus
           16]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+     +   L+   + V   + G  G+ +    E+D ++LD  L  + G 
Sbjct: 1   MKLLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A++      PV ILS M S+ED+V GLQ+G+DDY+ KPF   EL+AR+  I+ R++
Sbjct: 61  KVLSAIKATLEHLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +    L+V+L A  V      + L  KE+Q+I+         +++      +
Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL  A G ++ + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEEA-GCRDLLHTVRGAGYVLR 223


>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
 gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
          Length = 231

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   ++  L    + V     GE  ++       D +ILD+ +  I G E
Sbjct: 4   RILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVD-DSLDLVILDVMMPGISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R +  + P+  L+  SS  DK  GL +G DDY++KPF++EEL AR+ A +RR   
Sbjct: 63  TCQQMRASS-NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   ++ +V G L V+ +   V     ++ L+  EY+M++LL  R+N   + +   
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++           + V I KLR K+ +      YI+T WGRGY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPVYIKTEWGRGYRF 228


>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 229

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           RIL+++DD A+   +  +L+   + +             + F     +ILDL L D  GF
Sbjct: 3   RILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDGDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      P+ +LS    ++D+V GL  GADDY++KPF   ELVAR+RAI+R ++
Sbjct: 63  ELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLAQ 122

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +++     G L  + + +        + LT KE  ++  L  + +    +   L  +
Sbjct: 123 HQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQTV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + +I+DV + +LR K++      + I+TV G GY L+
Sbjct: 183 WGTNFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRLK 226


>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
 gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
           [Thermodesulfobium narugense DSM 14796]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  ++++I+  L    F V       D  ++    +   IILDL L D+ G E+
Sbjct: 5   ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLMLPDMFGSEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR   +  P+ +LS ++   +KV  L  GADDY++KPF  +EL+ARIR+++RR  G 
Sbjct: 65  LKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKNGF 124

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++  G   V+ +   +  QG+ ++LT  EY+++  L      T ++E  ++ ++   
Sbjct: 125 GL-VVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGEE 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +++DV+I +LR+K+         ++T  G GYVL 
Sbjct: 184 YFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVLE 223


>gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 267

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 127/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L+  + + L+ E + V     G   +++ + +  DA++LD+ L D+ G E
Sbjct: 43  RILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDGLE 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR   
Sbjct: 103 VLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 162

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +V GDL +N +++ V   G  + LT  E++++          L+K   L+ +
Sbjct: 163 STLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDRV 222

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  ++++++  LR+K+    G +  I T+ G GYVLR 
Sbjct: 223 WNYDFGGQANVVELYVSYLRRKI--DVGRQPMIHTMRGAGYVLRP 265


>gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 127/228 (55%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+      ++  LK + + + + + G+DG+ L    ++  I+LD  L  + G 
Sbjct: 1   MRILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR A   TPV ILS + S+ ++V+GL+ G+DDY+ KPF   EL+ RI  +++R  
Sbjct: 61  TVLTTLRNAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++    +++   DL + L ++ V    + + L  KE++++  L       +++ +    
Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++D + +P+  +IDV + +LRKK+    G  + +ETV G GY + E  
Sbjct: 181 VWDYQFDPQTNVIDVHMARLRKKVEFD-GLPSLLETVRGVGYRMVEQG 227


>gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
 gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM
           21326]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD      I   L+   + V   + G  G+ +    E+D +ILD  L  + G 
Sbjct: 1   MKLLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPYLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L A++      PV ILS M S+ED+V GLQ+G+DDY+ KPF   EL+AR+  I+ R+ 
Sbjct: 61  KILSAIKATIEQLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G  Q+ +    L+V+L A  V      + L  KE+Q+I+         +++      +
Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV +  LR+KL  A G +N + TV G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHVANLRRKLEEA-GCQNLLHTVRGAGYVLR 223


>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +     + L+ E + +     GED +   +    D  I+D+ +  + G+ 
Sbjct: 3   KILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPRMDGWA 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  ALR +     P+ +L+       KVR  + GADDY+ KPF+  ELV R++A+++R +
Sbjct: 63  LCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKRYK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G +S++     V +   R+ L  KE++++  ++   N T  +E  +  L+ 
Sbjct: 123 IVASHTVEVGCISLSKTDYDVTMPEGRVKLPPKEFELLFKMASYPNKTFAREQLIEQLWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E + + +DV + +LR++      G   I T+ G GY L 
Sbjct: 183 VDYEGDERTVDVHVKRLRERFPEQTSGFR-IVTIRGLGYRLE 223


>gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 226

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAMSGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S+  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KLS   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLSALPGSTMTIETVRSVGYRIR 226


>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
 gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +    + + + V     G + ++    +  D I+LD+ +  I GFE
Sbjct: 4   KILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V R +R   +S P+  L+     +D+++GL  G DDYI KPF+ +EL AR+ A +RR   
Sbjct: 63  VCRMIR-DHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  +Q++ + G L+++   ++V   G  ++LT  E+ ++ELLS+      T+E   + + 
Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + +  I+   I ++R K+S A   K YIETVWG GY  
Sbjct: 182 GYDGDGDSSIVTEHIRRIRAKMS-AVSEKQYIETVWGVGYKW 222


>gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 223

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  +      E +   + + G   +      E DA ILD+ L D+ GF
Sbjct: 1   MRLLIVEDEGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+   LR +    PV +L+   S+ D+V+GL +GADDY+ KPF+  EL AR+RA+ RR+ 
Sbjct: 61  ELCARLRQSGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRAG 120

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G L ++  ++ V      ++L+  E+ ++ELL   ++  LT+   L+ +
Sbjct: 121 IGRDVAVRLQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  R      ++D ++  LR K+         IETV G GY LR
Sbjct: 181 WGYRYPVTSNVVDQYVRYLRHKVGQD-----LIETVRGVGYRLR 219


>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 242

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 11/237 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   I L LK     V           L      D ++LD  L DI G E 
Sbjct: 5   ILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPDITGLEF 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R+LR  + +   P+ +L+      DK+ GL++GADDYI+KPF+  EL+ARI+A++RR  
Sbjct: 65  ARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVLRRRL 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGH-------RIHLTGKEYQMIELLSLRKNTTLTKE 172
              +  +I  G L ++     V V           I L   E++++  L   K    T+ 
Sbjct: 125 PEMSDEIIDIGGLKLDPTTHRVHVYSEYDSAKLSEIILGPTEFRLLHFLMAYKERVHTRA 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             L+ ++      E + +DV I +LRK L    G +N ++TV G GY       +E+
Sbjct: 185 QLLDRVWGDHVFIEDRTVDVHIRRLRKILETV-GKENLVQTVRGTGYRFSVERSEES 240


>gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
 gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC
           35316]
          Length = 240

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAAGYAPTLINHGDHVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR R 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  ++  +  L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEADA 236


>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 226

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD  +   I++ L+      V     G + + + +    D +++D+ + ++ G+
Sbjct: 3   KILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+        V+G + G DDY+ KPF   ELV R++A+++R +
Sbjct: 63  ELCREIRR-NTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G+L +N      +       L  KE++++  L+    +TLT++  +  ++ 
Sbjct: 122 VAASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +DV + +LR++          I TV G GY L 
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFR-IRTVRGLGYRLE 222


>gi|328469306|gb|EGF40252.1| putative two-component response regulator [Vibrio parahaemolyticus
           10329]
          Length = 243

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +   V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHQVSRESSVAAGRNAYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQQQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKNVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  +   
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGYKFQPRP 243


>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
 gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA+ + L LK E +   V   G  G++     +FD I+LDL L ++ G E
Sbjct: 3   RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VARRVRELK-DTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISI 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    Q+ +   DL++  + + V      I+LT +EY+++ +L    N  ++++  L
Sbjct: 122 EDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    + E  ++DV+I  LR K+ + +G K+YI+TV G GYV+R
Sbjct: 182 SKVWGYDSKVETNVVDVYIRYLRNKI-DRSGEKSYIQTVRGTGYVIR 227


>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDYI+KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDT 223


>gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
 gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
           DSM 15981]
          Length = 234

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL++D+K +   +E +L+ + F  +     G   I  C+ +  DA++LD+ L D+ G 
Sbjct: 4   RILLVDDEKDILDLLEEVLRRDGFREIRRAKDGAGAIRACREFLPDAVVLDIMLPDMDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL  G DDYI+KPF+  E+V R++A +RR +
Sbjct: 64  EVCKQIREFSYCS-ILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLRRQQ 122

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A +L+  G +SV+ ++      G  + LTG+E+ ++  L    +  ++KE  
Sbjct: 123 YQGAGPAAAGTLLTAGPISVDRESGRAYKDGRELSLTGREFLLLACLVEHADKIISKERL 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++          I V I  LR+K+ ++      + TV G GY L++
Sbjct: 183 YEQVWGAYSAICDNTIMVHIRHLREKIEDSPSSPRQLVTVKGLGYKLKK 231


>gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22]
 gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E + V  +  G++G+ L     +D I+LD+ L    G 
Sbjct: 4   MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIKDGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++LR + I TP+ +L+   SIEDK++GL  GA+DY++KPF+  EL+ARIR  + R  
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQL-RIT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L  KT       I LT KE+ ++E L   KN  L++      L  
Sbjct: 123 TTTQTKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D     I++V+I +LR K+      K  I+TV G G+ + E+
Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225


>gi|256395278|ref|YP_003116842.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256361504|gb|ACU75001.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 244

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  L   +   L+ E ++      G + +     Y+ DA++LD+ L D+ G E
Sbjct: 16  RFLVVDDEPDLVEVVCGALRHEGWDAVGAHDGREAVSAAATYQPDAVVLDMMLPDMDGME 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +  ++    V  L+   ++ED++ G+ +G DDY++KPF+ +E+V R+R++VRR+  
Sbjct: 76  VMRRIHTSRPEVRVLFLTARDAVEDRIAGIAAGGDDYVAKPFSLDEVVVRLRSLVRRTAR 135

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +   +V GDL ++  A+ V   G  I L+ KE+ ++  L       L+K   L
Sbjct: 136 GRTGRVASPDCLVVGDLVLDEAAREVTRGGEPIDLSPKEFSLLWFLMRHPRQVLSKSQIL 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++      +  +++++I  LRKK+   AG    I TV G GYV++  A 
Sbjct: 196 AEVWSYDYGGQAHVVELYISYLRKKI--DAGRPAMIHTVRGAGYVIKAAAP 244


>gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
 gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2]
          Length = 240

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + + G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLINHGDLVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +  D  L V+        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDTEQSFIRAVYGVGYRWEADA 236


>gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
 gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 124/222 (55%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  ++  I++ LK   ++V     G + ++  K  E D +ILD+ L  + G+ 
Sbjct: 3   KILIIEDEYPISQVIKVYLKKAGYDVEQVFDGSNAMDTFKHVEPDLVILDVMLPGVDGWT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +L+ +R       V +L+ +  +  ++ GL  GADDYI+KPF+ EELVAR++A++RR  +
Sbjct: 63  LLQDIRSK---CAVIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVLRRIGN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + +  ++I  G L +++ A  V + G  I LT ++  ++   +   N T T+E  L+ ++
Sbjct: 120 KNNNSNVIKFGTLEIDVVAHRVRLLGTIIELTPRDLSLLLFFADNPNRTFTREQLLDSIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + +D+ I +LRK L +    +  I+T  G GY  
Sbjct: 180 GWDYDGSDRAVDLSIKRLRKSLKDWPKSEGEIKTFRGLGYQF 221


>gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 238

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED   LA  + L L  E       +  E   +  + +  D ++LDL L  + GFE
Sbjct: 4   RILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L   R    STPV I+S   + ED + GL  GAD+YI+KPF+   LVAR+RA++RR   
Sbjct: 64  FLHKFRKTH-STPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   ++ +   GD +++L +  +   G RI L+ KEY ++  L       LT  + 
Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            + ++      ++  + V+I +LRKK+        +IETV+G GY     +  E
Sbjct: 183 YDEVWK-NAYGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGYRFTAGSGTE 235


>gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
 gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator
           protein [gamma proteobacterium IMCC1989]
          Length = 236

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 13/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--------EFDAIILDL 52
           M+IL+IEDD  +   ++  LK+E +   + + G  G+ L +          E   +ILD+
Sbjct: 1   MKILVIEDDPRVHGFLQRGLKAEGYQTELAEDGATGLGLARELHKAFRDNAEKSLVILDI 60

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            + ++ G EV + LR      P+ +L+ ++  +D+V GL++GADDY+ KPF+ EEL+ARI
Sbjct: 61  MMPEMNGLEVCQQLRAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLARI 120

Query: 113 RAIVRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
             + RR            +   DL ++LD+  V      I LT KE  ++EL+       
Sbjct: 121 EGLARRGLVAPDKQRAKQLSVADLHLDLDSMRVFRGDEEISLTAKELALLELMMRSVGRL 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++E  L++++   ++P   I+DV+I +LR K+         I T  G GY L 
Sbjct: 181 FSRERILSNVWGLNEDPLTNIVDVYIRRLRNKIDTD-NKPQLIHTQRGLGYRLE 233


>gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
 gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS
           182-1]
 gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS
           78-1]
          Length = 240

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L  I G  
Sbjct: 12  RIMIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGIDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADA 236


>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 223

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I+     E   V     G + I++C+  EFD I++D+ + ++ GF 
Sbjct: 3   KILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R     TPV +LS      DK+ G + G DDY+ KPF+ +EL+ R+ AIV+RS  
Sbjct: 63  ACKEIRKF-CMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVKRSSG 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +G+ + +     L+V+   + V +   +I ++ KEY +   +   +   LT+E  +  +
Sbjct: 122 DKGNKKDIFTIEGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYMVKNRGIALTRERLITDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +D  I  LRK L + +     I T+ G GY   
Sbjct: 182 WGYDFFGDDRTLDTHIKLLRKSLGDYSKN---IVTLRGVGYRFE 222


>gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
          Length = 214

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
 gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus casei ATCC 334]
          Length = 233

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56
           M+  +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  
Sbjct: 1   MKSTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +
Sbjct: 61  LDGFSVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVAL 119

Query: 117 R--RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  R      ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  
Sbjct: 120 RHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N 
Sbjct: 180 LAAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANV 230


>gi|15893581|ref|NP_346930.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023129|gb|AAK78270.1|AE007542_7 Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507701|gb|ADZ19337.1| Response regulator (CheY domain, HTH domain) [Clostridium
           acetobutylicum EA 2018]
          Length = 235

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 124/228 (54%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D++++   +  +LK E F NV  +  G DG++ C+    + IILD+ L DI GF
Sbjct: 8   KILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIMLPDIDGF 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R +R    S P+  LS  S   DK+ GL  GADDYI+KPF+ +E+  R++A ++R  
Sbjct: 68  EVFRQIRNFS-SVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S  + +++I T   +++ +   +        L  KE  +++ L   KN  L+KE  
Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +N +++         I V I KLR+KL +      YI TV G GY L+
Sbjct: 187 VNAVWEDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKLK 234


>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 240

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I +++D   +   +   L  E + + V   G +   L      D IILD+ +    G  
Sbjct: 6   HIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R ++ +TPV  LS  +   D + GL+ G DDY+ KPFN  EL+AR++A++RR+  
Sbjct: 66  LCRHIR-SRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124

Query: 122 HAQS-------LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            ++         I  G+  +N   + +    G  + L+G E++++  L  +    +T++ 
Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            LN +     EP  + ID  I +LR+K+        YI T WG GY   
Sbjct: 185 LLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233


>gi|315444804|ref|YP_004077683.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|315263107|gb|ADT99848.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 248

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/230 (36%), Positives = 122/230 (53%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E F+  V D G D I L + ++ D +ILDLGL  I G E
Sbjct: 16  RALVVDDEVPLAEVVASYLQREQFDAVVADNGVDAIALARDFDPDVVILDLGLPGIDGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R+LR    +  V +L+   +  D V GL  GADDY++KPF+  ELVARIRA++RR R 
Sbjct: 76  VCRSLRTFSDAY-VVMLTARDTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRL 134

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                             G LS+++ A+ V +    I LT  E+ +++ LS R    L++
Sbjct: 135 LQSPPTGADREVTPPRRFGALSIDVAAREVRIADDPILLTRTEFDILQALSGRPGIVLSR 194

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              L  + D       +++DV I  LR+KL + A    YI TV G GY +
Sbjct: 195 RQLLEIIRDEPWVGNDQLVDVHIGHLRRKLGDDAARPRYIATVRGVGYRM 244


>gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
 gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 130/227 (57%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+IED+K LA  ++L L+ E +   +   G  G+E     E+D I+LDL L ++ G E
Sbjct: 7   RVLIIEDEKNLARFVDLELQHEGYETDIRHDGRSGLEAALDEEWDVILLDLMLPELNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K  TP+ I++   S+ D+V GL  GADDYI KPF  EEL+AR+RA+ RR   
Sbjct: 67  VCRRIRPIK-DTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDH 125

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  +   DL V    + V+     I LT +EY+++  L    N  ++++  L
Sbjct: 126 EEELRVTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTLL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++  + E E  ++DV+I  LR K+ +  G ++YI+TV G GYV+R
Sbjct: 186 DKVWGYKSEVETNVVDVYIRYLRNKI-DVPGQESYIQTVRGTGYVMR 231


>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 126/223 (56%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDDK +       L+++N+ V     G + I+  K  ++D IILD+ + ++ G  
Sbjct: 5   RILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGHT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R    + P+  L+ +S   D+++G + G DDYI+KPF+   L+ R+ A++RRS  
Sbjct: 65  TCKMIRNTS-NIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHN 123

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++  +   D+S++L+  T++V+   + LT KE+ +++ L  +    +T+E  L+ ++ 
Sbjct: 124 ENKNTSLNFEDISLDLNTYTLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + +I+D  I  +RKK+     G  YI+TV G GY L +
Sbjct: 184 YDYYGDSRIVDAHIKNIRKKI-----GLPYIKTVKGIGYTLEK 221


>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
 gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
 gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM
           12042]
          Length = 223

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+ ++ H I   LK+  F+V     G    E      FD +I+D  L +I G E
Sbjct: 3   RILLIEDEDSIRHLISYDLKNAGFDVTGCPDGASAREKGLNESFDIMIIDWMLPEISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R  R   I + + +L+     ED +   ++G DDYI+KPF+  EL+ARI+A V+R   
Sbjct: 63  LVRLFRGKGIDSVMMMLTAKDEEEDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++ ++  G L+++L ++ V V G  + LT KE++++E L       L+++  LN ++D 
Sbjct: 123 TSRRVLEMGGLTMDLGSREVSVNGQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWDF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + + +I+DV I KLR KL    G    I ++ G GY L   A
Sbjct: 183 DYDGDTRIVDVHIFKLRNKLQ---GSGVKIASLRGIGYKLEVQA 223


>gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 226

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGATSGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +SL  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL    G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGVLPGNTMTIETVRSVGYRIR 226


>gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae
           Sd197]
 gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
 gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella
           dysenteriae Sd197]
 gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617]
          Length = 219

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 229

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    +E + V     G++ + L +  E   +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR----- 117
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-QVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILT 123

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +S  +    +    + V+  ++ V ++G  I+LT  E++++      +   LT+E  ++
Sbjct: 124 SKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL + A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGDKA---KYITTVVRMGYKFEGNV 229


>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  N    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 231

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    S PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-SVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + + +  LR+KL +      +I T  G GY L    
Sbjct: 186 PSHVEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAPV 230


>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
 gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
           frederiksenii ATCC 33641]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQNIDQGAPTLEVDCLQLNPGRQEASFEGQSLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLMV 229


>gi|297154811|gb|ADI04523.1| CheY-like receiver domain-containing response regulator
           [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  L   ++  L++E F V       DG+       +D IILD+ +  + G+
Sbjct: 1   MRVLVMDDDTRLVELLQQGLRAEGFAVDAASDSLDGLAKAAADNYDVIILDVMMPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+  GL++GADDY++KPF+   L AR+ A++RR+R
Sbjct: 61  KVCAHLRSIGDNTPILMLTAKDGEYDEAEGLETGADDYLTKPFSFVVLTARLHALIRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q +   GDL ++   +     G  I LT +E+ ++ LL+   +  ++K   L+ ++D
Sbjct: 121 PERQVVQHFGDLEIDTGGRRCRRAGTDIALTPREFDVLALLTATPDIAISKAAILDRVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    I++V +  LR+K+ +   G+  IETV G  Y LR + 
Sbjct: 181 SAYEGGPNIVEVHVSALRRKI-DRPFGRASIETVPGGAYRLRSDG 224


>gi|251787958|ref|YP_003002679.1| DNA-binding transcriptional regulator BasR [Dickeya zeae Ech1591]
 gi|247536579|gb|ACT05200.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 127/230 (55%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDE 228
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++  +KDE
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKDDQSKDE 225


>gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 233

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L +E + V     G    E     + D ++LDLGL D  G  
Sbjct: 7   KILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDKPDIVVLDLGLPDTDGHT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   IS P+ ILS  +     VR L+ GADDYI KPF  +EL AR+R  +R    
Sbjct: 67  LLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + L   G L+V+L  + V++ G  I L+ KEY ++ LL       LT    L+ ++
Sbjct: 127 QQGQKPLFQCGGLTVDLVRRIVKLNGEEIKLSPKEYDILSLLVQHAGKVLTHHFILSQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + +   + +++ +LR+K+  +    +YI T  G GY LRE
Sbjct: 187 GPAADVQ--YLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228


>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   I+  L    F +     G  G        +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDKMIGDGIKAGLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A   TPV IL+   ++E +V GLQ+GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  QLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  G +  +  A++V + G  + LT +E  ++EL    K   L + +    LY 
Sbjct: 121 GVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             DE     ++V I  LR KL     GK +I TV G GY L +  K
Sbjct: 181 WEDEVSSNAVEVHIHHLRSKL-----GKGFIRTVHGVGYTLGDEIK 221


>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
 gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
          Length = 231

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK +A  ++  L+   ++  V   G  G+ L + + F  +I D+ L  + GFE+
Sbjct: 4   ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A    PV +L+ + S +DK+ G  +GADDY+ KPF+  EL ARI+ +++R    
Sbjct: 64  CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +   DL ++ + + V  QG+ I L+ KEY ++  +       +++      
Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +++   +     IDV+I  LRKK+         I T  G G++L +   
Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDF-ETKLIHTKPGIGFILTDEKP 231


>gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 242

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +A  I+  L+   + V     G+ G+ L +   +  II D+ L  I GF
Sbjct: 16  IKILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSYHMIISDIILPHISGF 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+ + +R+   + P+ +L+ + + +DK+ G  +GADDY+ KPF+  EL ARI+ +++R  
Sbjct: 76  ELCQKIRLIDKNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLKRGL 135

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S I   DL++NL+ K    +G  I L+ KEY ++  +       L++      
Sbjct: 136 EKGSSQPSEISYSDLTINLNTKEASRKGKLIKLSPKEYNLLLFMIKNPERVLSRIEIAEK 195

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   +     IDV+I  LR K+ +     N I T  G G++  +
Sbjct: 196 VWDTHFDTGTNFIDVYINYLRNKI-DKPFDTNLIHTKPGMGFIFTD 240


>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
 gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL++D+  +   +EL L +E F V     GE  +     +E   I+LD+ +  + G 
Sbjct: 7   IRVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L+       V +L+    I+D+V GL +GADDY++KPF+ EEL+ARI+A +R   
Sbjct: 67  AVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLRNQF 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G  +++   K +   G  + L+  EY++++LL  +  + L+K   LN ++D
Sbjct: 127 PSLLGEIRLGPFTIDDRKKEISYLGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR+KL +       I T+ G GY 
Sbjct: 187 YDFGGEDNIVEVYIRSLREKLGD--KEHRVIRTLRGAGYR 224


>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 238

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +  +I    + + + V     G   +E       DAI+LD+ + ++ G EV
Sbjct: 14  LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     TPV +L+   ++ D+V GL +GADDY+ KPF   EL AR+RA++RRS   
Sbjct: 74  CRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSEYD 133

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +V  DL ++ +++     G  I LT  E+ ++ELL       L +E+  + ++
Sbjct: 134 PVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDRIW 193

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                PE   ++VF+  +R+K +   G    ++TV G GY LR  A
Sbjct: 194 GYELGPESNSLEVFVSCIRRK-TEGGGEPRLVQTVRGFGYTLRVPA 238


>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 230

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ LK+E   V     G + +E+   ++   I+LD+ + ++ G   
Sbjct: 6   VLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDGISA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ ILS  S   DK+ GLQ GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 66  TYKIREKK-NIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVSF 124

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++    L++  + K V+V G  + LT  EY+++ELL L      + +     
Sbjct: 125 GTFEGIRKVVDLNGLTLEKETKEVKVNGEPVKLTPIEYKIVELLMLNAGRVFSIQEIYEL 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++          + V I K+R+K+   A    Y++ VWG GY + 
Sbjct: 185 VWKEPGYNAENTVAVHIRKIREKIEIDAKNPRYLKVVWGVGYKME 229


>gi|238061627|ref|ZP_04606336.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
 gi|237883438|gb|EEP72266.1| two-component system response regulator [Micromonospora sp. ATCC
           39149]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++DD  ++  +   L+ +   V +   G DG+     +  D ++LDL +  I G EV 
Sbjct: 2   LVVDDDLTVSDVVRRYLEQDGCEVRLAADGADGLAAIAVHRPDLVVLDLMMPGIDGLEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R      PV +L+ +    D+V GL+ GADDY++KPF+  ELV RIR+++RR+ GH 
Sbjct: 62  RRIRRQLPDLPVIMLTALGEEADRVLGLEVGADDYVTKPFSPRELVLRIRSVLRRTAGHT 121

Query: 124 QSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            S      +V  +L+V+   +  E+ G  + LT +E+ ++  L        ++   L+ +
Sbjct: 122 TSPAGLTRLVDAELAVDTARRVAELNGTPLSLTVREFDLLVFLMRHPGRAWSRSDLLDKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  +   +   + V + +LR+K+         I TVWG GY 
Sbjct: 182 WGWQF-GDQSTVTVHVRRLREKIERKPAEPRRIRTVWGVGYR 222


>gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
 gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
           25302]
          Length = 241

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  + GF
Sbjct: 13  LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--R 118
            VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +R  R
Sbjct: 73  SVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNR 131

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  L+ +
Sbjct: 132 QAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N 
Sbjct: 192 WETDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANV 238


>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
           SK2]
 gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
           borkumensis SK2]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  L+  +   L   +F    TD  +  + +     F AIILDL L D  G E
Sbjct: 3   HILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLMLPDGDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +++      D++ GL+ GADDYI KPF+  ELVAR++A++RR+  
Sbjct: 63  VCKTIRQ-HSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     +  L ++ +     +       RI LT  E+ ++  LS +     +++  ++ 
Sbjct: 122 ESPEQEHS--LQLDEERYEAILKQPQGQQRIGLTAIEFALLSTLSRQPGRIWSRDQLMDE 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLR 222
           +Y+       + ID  I KLR+KLS+      ++I +V+G GY L 
Sbjct: 180 IYNDHRVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225


>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
 gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L  +I+  L  E + V     G +  E  +    ++   I D  L  + 
Sbjct: 1   MRVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR      PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GLELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVE---VQGHR--IHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       +   +L+++   +TV    ++G +  I LT KE+Q++E L    N  +T + 
Sbjct: 121 SPQLQPEQLTVVNLTLDYGTRTVYHFNLKGEKQIISLTNKEFQLLEYLMRHPNQIVTSDR 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N +++   +    ++   +  LR+KL +     N I TV G GY L
Sbjct: 181 IRNQIWEADADAFSNVVAAQMRLLRRKLESVGCAANLIGTVHGVGYRL 228


>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
 gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 136/226 (60%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+K L+ SI+++L+   + V     GE+ +E  K   +D +ILD+ +  + G+
Sbjct: 1   MRILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R LR  K   P+ +L+  S +ED++ GL+ GAD Y++KPF+K EL+A I A++RR +
Sbjct: 61  QVARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRR-Q 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  GDLS++LD+K +    H + L+ KE++++ +L   KN  L+KE  L  ++ 
Sbjct: 120 GQEVNSLSFGDLSLDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     ++V++  LRKKL       + I++  G GY L E  +
Sbjct: 180 YDSDAVENHVEVYVGFLRKKLRLLESRVS-IQSRRGLGYFLAEQEE 224


>gi|212710908|ref|ZP_03319036.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
 gi|212686605|gb|EEB46133.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM
           30120]
          Length = 237

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  L   +   L++  +   +   G++ I   + +  D I+LDL L  + G  
Sbjct: 15  HVLIVEDEPKLGQLLFDYLQASGYVPALLMRGDEVIPYVQKHFPDLILLDLMLPGLDGIS 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +++  +   D++ GL+ GADDY+ KPF+  E+VAR++ I+RR + 
Sbjct: 75  VCRELRQFS-DVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQH 133

Query: 122 HAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + S    G  L ++ +A  V      + LT  E+++++ LS    T  +++  L+ LYD
Sbjct: 134 SSTSANHHGTQLIIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILYD 193

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  + ID  +  LR+KL +    K +I +++G GY   +
Sbjct: 194 DHRVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWDD 236


>gi|307546478|ref|YP_003898957.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307218502|emb|CBV43772.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 239

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 6/228 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD+ LA      L +  F V +   G  G +     + D +ILDL L+   G  +
Sbjct: 13  VLIIEDDERLAELTRDYLVANGFRVTLEADGARGAQCILDLQPDLVILDLMLSGEDGLSI 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+AR+RA++RR    
Sbjct: 73  CRRVRADYPG-PILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARMRALLRRKSET 131

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G+ +  +   DL ++   +   + G RI LT  E+ ++ LL+      LT+E     
Sbjct: 132 SGNGNGEDRLFFRDLEIDSGTREAWLGGERIDLTSAEFDLLWLLASHAGRVLTREEIFAQ 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L   + + + + IDV + ++R K+ +     + I+TV  +GY+   +A
Sbjct: 192 LRGIKYDGQDRSIDVRVSRIRPKIGDDPHHPHRIKTVRSKGYLFVRDA 239


>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
 gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
           DSM 4541]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQLH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPTLQVDKLQLNPGRQEASFDNEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLMV 229


>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
 gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
          Length = 232

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDA-SVDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQ-NFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q          +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQKQTDSTTSPTLQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLMV 229


>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 243

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  ++  L+   +   +   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 19  ILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDGFEL 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
            + +R      P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R   +
Sbjct: 79  CKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRNNEA 138

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  I   DL ++L  K V   G  I L+ KEY ++  ++      L++      ++
Sbjct: 139 TAPQPREIRYSDLYIDLQGKNVTRNGTPIKLSPKEYNLLLYMTENAERVLSRIEIAEKVW 198

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 199 NTHFDTGTNFIDVYINYLRKKIDKDFDTK-LIHTKAGMGFILTD 241


>gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
 gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum
           SW]
          Length = 238

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 108/234 (46%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD+ +   +   L    + V     G++          D ++LDL L    G  
Sbjct: 6   HLLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R      PV +LS M    D++ GL+ GADDY+ KPFN  ELVARI+A++RR + 
Sbjct: 66  LCRAIRADGG-PPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRVQT 124

Query: 122 HAQSLIV------TGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              + +            ++   + +   QG  + LT  EY+++  L+ R    L+++  
Sbjct: 125 PGATPVNGAGALAFCGYVLDQAQRRLTDPQGAEVTLTAGEYELLVALATRPRRVLSRDDL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L         P  + IDV I +LR+K+         I+TV   GY+       +
Sbjct: 185 LEITRGRSAGPFDRSIDVQISRLRRKIEPDPADPAIIKTVRSGGYIFSPEVTQQ 238


>gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018]
 gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E + V  +  G++G+ L     +D I+LD+ L    G 
Sbjct: 4   MKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPVKNGI 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++LR + I TP+ +L+   SIEDK++GL  GA+DY++KPF+  EL+ARIR  + R  
Sbjct: 64  EVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQL-RIT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L  KT       I LT KE+ ++E L   KN  L++      L  
Sbjct: 123 TTTQTKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSS 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D     I++V+I +LR K+      K  I+TV G G+ + E+
Sbjct: 183 FEDSNISNIVNVYIYRLRNKIDKNFENK-LIKTVRGIGFKISED 225


>gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC
           3083-94]
 gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC
           3083-94]
          Length = 219

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
 gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
           92-3]
          Length = 229

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   L  E F+V     GE+ + + +    D  I+D+ +  + GF+
Sbjct: 4   KILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  ++  K   PV +L+  S   DK+RG   G DDY++KPF+ +EL+AR++ I++R   
Sbjct: 64  LVEEMKEFK-DIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           ++Q+++   D+  + D   +      +HL  K++++   L+   N   T+E  +  ++  
Sbjct: 123 NSQNIVQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I ++R+ L +  G K  + TV G GY + 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKIE 221


>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEARHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 113/220 (51%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD  +   + + L++E F +     G++ ++  +      +ILD+ + ++ G+E+
Sbjct: 4   IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMDGWEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+       K++G + G DDY+ KPF+ +ELV R++A+++R R  
Sbjct: 64  CRKLRE-HYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRIA 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +  G L ++     V        +  KE++M+  L+     T+++E  +  ++   
Sbjct: 123 ASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWGYD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +DV I +LR++   A  G   I TV G GY L 
Sbjct: 183 FEGNERTVDVHINRLRERFPEAMYGF-LIRTVRGLGYRLE 221


>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
 gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
          Length = 229

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+  ++  A ++   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL         I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
 gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  I+DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS IV G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL     G   I+TV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLE-GPSGFKPIDTVRGLGYLFNE 222


>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 246

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +  +I   L++E F V     G   ++  + ++ D ++LD+ L    G E
Sbjct: 21  RILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVMLPGFDGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR   
Sbjct: 81  VCRRVQATRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A         ++  G+L ++   + V V+G  +HLT  E+ ++  L+      L++E  
Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGVDVHLTPTEFDLLVCLANTPRAVLSREQL 199

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++D  D    + +D  I  LR+K+     G   I TV G GY L   A 
Sbjct: 200 LAEVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALETPAP 246


>gi|120402752|ref|YP_952581.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119955570|gb|ABM12575.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 228

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADIDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
 gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7822]
          Length = 633

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 124/229 (54%), Gaps = 1/229 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD      +   L + ++NV V   G+ G++L + Y +D  +LD+ +  + G  V + L
Sbjct: 2   EDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGISVCQQL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R   +  P+ +L+   S  D++ GL +GADDYI KP N E L+ARIRA++RR      S+
Sbjct: 62  RSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSSV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I  G+L +NL    V  +   IHLT KEY ++EL  +       + + L  L+D  + P 
Sbjct: 122 IEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESPG 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
            + +   I  LR+KL   AG  + IETV+G GY LR+  + +T   L T
Sbjct: 182 EETVSTHIKCLRQKLK-NAGVSDPIETVYGLGYRLRKADEIDTSPNLST 229



 Score = 74.9 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 26  NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCILSGMSS 83
            V          E+   Y  + ++LDL +    G E+ + +R        P+  LS  + 
Sbjct: 538 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 597

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            E   +   +GADDYISK  +  +L   I  I+RR +
Sbjct: 598 EEMIQQMFAAGADDYISKQSDHTDL---INHIIRRLK 631



 Score = 71.8 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD--IPGF 60
           IL+I+DD ALA  + +  ++ N N+ +        ++        IILDL        GF
Sbjct: 389 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 448

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKP 102
            +L  L  ++ + P+ I +G  S+ D+++  + GA  ++ KP
Sbjct: 449 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 490


>gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16]
          Length = 231

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  +   L+   F       G   +E  K    D I+LD+ L    G E
Sbjct: 7   HILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +++      D++ GL+ GADDYI KPF+  E+VARI+A+ RR + 
Sbjct: 67  VCKEIRAFS-TVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                       ++   + +  +  R+ LT  EY++++LL        ++   L+  Y  
Sbjct: 126 IGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLR 222
                 ++ID  I  LRKK+S A   G+  I  V+G GY   
Sbjct: 186 EQLIIDRVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFE 227


>gi|89899315|ref|YP_521786.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89344052|gb|ABD68255.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 227

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 119/219 (54%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+   F V     G          ++ A +LDLGL    G 
Sbjct: 1   MRILLAEDDSMLGDGLRAGLRQLGFQVDWVRDGLAAERELACGDYAAAVLDLGLPLKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+A+R +KI+TPV +L+   ++ D++RGL  GADDY+ KP +  EL AR+R++VRR+ 
Sbjct: 61  DVLQAVRASKITTPVLVLTARDAVPDRIRGLDLGADDYVVKPVDLHELGARLRSLVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G + +   A+ V +    + L+ +E+ ++ +L L  +  L++E     LY 
Sbjct: 121 GQMQDVLRCGAVLLEPSARRVSLNDEPVALSTREFDLLHVLMLNADRVLSREQLEQQLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              E E   I+V I  LR+KL       + I+TV G GY
Sbjct: 181 WGYEVESNAIEVHIHHLRRKL-----QPDLIQTVRGIGY 214


>gi|58038870|ref|YP_190834.1| DNA binding response regulator [Gluconobacter oxydans 621H]
 gi|58001284|gb|AAW60178.1| DNA binding response regulator [Gluconobacter oxydans 621H]
          Length = 251

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD ++A  +   L +  + V     G +G++     +FD +I+D  L ++ G  
Sbjct: 29  RLLLIEDDDSIAAEVAEELTTRGYEVTRAATGVEGLDHACTGQFDLMIVDRMLPELDGLT 88

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ++R  +I+ PV +LS +S+++D+V GL++G DDY++KPF  EEL AR+ A++RR   
Sbjct: 89  VIESVRAQRINIPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPTD 148

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  + V   G  I L  +E++++E +  R +T LT+ M L  +++ 
Sbjct: 149 SRVTMLRVGPLEMDLIERRVFRNGQEIDLLPREFRLLEYMMRRPDTVLTRTMLLEDVWNY 208

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ +  G    I ++ G G+ LR
Sbjct: 209 RFVPQTNLVDVHIGKLRRKI-DVPGEPPLIHSIRGAGFSLR 248


>gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris]
 gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens]
 gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby]
 gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99
           Alcoy]
 gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b]
          Length = 225

 Score =  254 bits (649), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 119/212 (56%), Gaps = 5/212 (2%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L    + V     GE      K   F+ IILDLGL  + G  +L+ +R    S
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNS 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV IL+   SIED+V+GL SGADDY+ KPF+  EL ARIRA+VRRS+G A S++   ++
Sbjct: 73  TPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRRSQGRADSVLQYKNI 132

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           +++  A +V V    +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V
Sbjct: 133 TLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEV 192

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            I  LRKKL       N+I T+ G GY+  +N
Sbjct: 193 HIHNLRKKL-----NANFIRTIRGVGYMAEKN 219


>gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 232

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +I++ L+ E  NV  +  G + +E+    +   ++LD+ +  + G   
Sbjct: 8   VLVVDDEKEIRDAIDIYLRGEGINVIKSGDGFEALEILDKEDIHLVVLDIMMPKLDGMRT 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R ++ + P+ +LS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 68  CLKIRESR-NIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRRYDYP 126

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R + Q LIV  DL+++   K V ++G  I LT  EY+++ LL+       + +     
Sbjct: 127 LNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKEIYER 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++         + V I ++R+K+   +    YI+ VWG GY +
Sbjct: 187 VWEEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKI 230


>gi|330810822|ref|YP_004355284.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378930|gb|AEA70280.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 222

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELMAGLARQGYAVDWLADGRDAVYQGSSEPYDLIILDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  DVLAQWRAGGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q  + +  L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQVNQPTLKSAGLHLDESRQCVVRDGTDIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+    A+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYLFGGQAQ 222


>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [uncultured
           actinobacterium HF0770_13M05]
          Length = 224

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 118/218 (54%), Gaps = 3/218 (1%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD  ++  +   L++  F+V+ +   E  +++      D +I+D  L  + G  + +
Sbjct: 1   MVEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTK 60

Query: 65  ALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            LR    +   P+ +L+  S   D ++G  SG DDYI+KPF+  EL+AR+ A++RRS   
Sbjct: 61  TLRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTDG 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A SLI +  +S+N    T+++ G  ++L  + Y +++ L    N  L++   L+  +   
Sbjct: 121 AGSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWGRS 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E + +DV+I +LRKKL  +      I+T+ G GYV
Sbjct: 181 VYVEERTVDVYIVRLRKKLEPSGKSA-VIKTIHGVGYV 217


>gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
 gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis
           PC909]
          Length = 224

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E +LK E F +++    G + + L K    D ++LD+ L D+ G 
Sbjct: 5   KILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVMLPDLSGH 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ +       PV  +S  +   D++ G   GADDYI+KPF+ +E+  R++A ++ + 
Sbjct: 65  QLIKEI-HQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I  G++++      V      + LT KEY+++  L    N  ++KE   + ++ 
Sbjct: 124 KT----IQFGNITI--TDGIVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I V I +LRKK+        +I T+ G GY   
Sbjct: 178 EDYFEFDNTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKFV 219


>gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 214

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
          Length = 240

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+  GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWEADA 236


>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 242

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 140 AQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 237


>gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23]
 gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23]
 gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei LC2W]
 gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family
           [Lactobacillus casei BD-II]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/231 (35%), Positives = 124/231 (53%), Gaps = 7/231 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56
           M+  +LL+ED+ ALA S+    + EN +V     G + + L K  E   + IILD  L  
Sbjct: 1   MKTTLLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + GF VLR +R +    P+ +L+    I DKV GL  GADDYI+KPF  EELVAR+   +
Sbjct: 61  LDGFSVLRKIRQSS-QVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVAL 119

Query: 117 R--RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R  R      ++    DL V+ D K V+     + LT +EY+++  L   ++   +++  
Sbjct: 120 RHNRQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L  ++    + +  I+DV+I  LR K+ + +G K  I TV G GY+L  N 
Sbjct: 180 LAAVWGTDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSANV 230


>gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 231

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 115/227 (50%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L  +I+  L  E + V     G +     +    ++   I D  L  + 
Sbjct: 1   MRVLLVEDEPDLGAAIQRTLTQEAYIVDWAKDGREAWGYLESQWTQYTLAIFDWLLPGLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ + LR  +   PV +L+     ED   GL +GADDY+ KPF K EL+AR+RA+ RR
Sbjct: 61  GIDLCQRLRAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEV----QGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           S       +  G L+++     V +    QG  + LT KE+Q++E         ++++  
Sbjct: 121 SPHFQPQQLQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSRDQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LN L+    +    ++   + +LR+KL+   G  + IETV+G GY L
Sbjct: 181 LNQLWGAEADTISNVVAALMRQLRRKLAEL-GCDDAIETVYGVGYRL 226


>gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223]
 gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223]
          Length = 219

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L + I   L    +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H+Y 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +   I+VFI ++RKK+       + I+TV G GY L  N
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APDVIKTVRGLGYQLHAN 219


>gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 226

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  +A  IE  ++ + F   +   G  G +L   ++F  II D+ L  I G 
Sbjct: 1   MDILIIEDDLRVAELIERAVQEQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  K   P+ +L+ + + ++KV G  +GADDY+ KPF   EL+ARIRA+++R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A     ++   DL +NL+ K V+  G  I LT KE+ +++         L++     H
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   +     IDV+I  LRKK+ +       I T  G G++LR
Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKI-DKGFDHKLIHTKPGMGFILR 224


>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
 gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. ATCC 51142]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V V D G+ G EL     +D +ILD  L   PG 
Sbjct: 1   MKILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + LR    + PV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  SICQELRSQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRRSA 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +    + +   DL ++ D +    QG  ++L+ KE +++       +  LT +    
Sbjct: 121 ASVETNGINRLKVADLELDSDNQVAYRQGRMVNLSDKEVKLLAYFMEHPHQLLTHDQIYQ 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L++  ++P   ++   I  LR+K+         I TV+G+GY  
Sbjct: 181 SLWEEPEKPSSNVLAALIRLLRRKIEEEG---PLIHTVYGKGYRF 222


>gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947]
          Length = 219

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G  G+       +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+ +  G ++++  + T  + G  + L  KE+ ++ELL       L + +    LY+
Sbjct: 121 GQTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V I  LR+KL +A     +I TV G GY L
Sbjct: 181 WEGDVSSNAVEVHIHHLRRKLGSA-----FIRTVHGVGYTL 216


>gi|306790486|ref|ZP_07428808.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308333099|gb|EFP21950.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu004]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
 gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
           [Alcanivorax sp. DG881]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 119/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   + + L+  +F+V   +  + G E+      D ++LD  L  + G E
Sbjct: 5   RILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  + +   P+ +L+  S  ++K++GL  GADDYI+KPF+  EL++RI+A++RR+
Sbjct: 65  LARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRA 124

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  I    L ++  +  +    + + +   EY+++E     +    ++   L+ +
Sbjct: 125 SSVAAEKAIEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + IDV I +LRK L+       +I+TV G GY  
Sbjct: 185 WGANVYVEDRTIDVHIRRLRKALAP-FDYDRFIQTVRGTGYRF 226


>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 217

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +++ I+L L   N+       GED +E  +   FD I+LD+ L  I GF
Sbjct: 2   IKILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVMLPKIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  ++      PV  L+  +S+ DKV GL++GADDYI+KPF   EL+ARI  ++R   
Sbjct: 62  TLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  ++I   D+ +NL   T    G  + LT KE++++  L   KN  LT+E  +  ++ 
Sbjct: 120 KNT-NVINFEDVEINLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E + ID  I KLRKKL      K+ I+TV+  GY L 
Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRLE 216


>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
 gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
           214-1]
          Length = 239

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++++A  ++  L+ E++ V   + G+  ++L    +   I+LD  L    G  
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +S  D    L  G DDY++KPF  EEL+ARIR ++RR   
Sbjct: 67  VLRRIRKQS-DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q        +  G L ++L          +I+LT KE+ +I  L        +++  L
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      +   +DV+I  +R K+ N    K  I+T+ G GY LR+
Sbjct: 186 DTVWGYDFVGQTNTVDVYIRTIRNKIGNPY--KKIIKTMRGLGYCLRK 231


>gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583]
 gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 237

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDDK +   + + LKS+++ V++   G +G+E+ +  E    I+D+ +  + G  
Sbjct: 5   HILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEEIHLAIVDIMMPRMDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      PV +LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 65  MTIKLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRRYRK 123

Query: 122 -----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         ++   G L VN +   V V    + +T  E++++ LL        +
Sbjct: 124 FMEKLQAKESERTDTIYTIGGLEVNENTFEVRVDDTPVKMTPMEFKILLLLIKNPGRVFS 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +     +++ R     + + V +  +R+K+        Y++ VWG GY + +
Sbjct: 184 ADEIYERVWNER-AINTETVMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 235


>gi|171743213|ref|ZP_02919020.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
 gi|171278827|gb|EDT46488.1| hypothetical protein BIFDEN_02341 [Bifidobacterium dentium ATCC
           27678]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 14/231 (6%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  
Sbjct: 1   MVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEAT 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----- 118
           + +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR     
Sbjct: 61  KRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAK 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L
Sbjct: 120 VIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 180 EEVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAFEPPEQ 225


>gi|145225290|ref|YP_001135968.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315445587|ref|YP_004078466.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145217776|gb|ABP47180.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315263890|gb|ADU00632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 119/219 (54%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V  QG +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224


>gi|312138612|ref|YP_004005948.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325676321|ref|ZP_08156000.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311887951|emb|CBH47263.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325552882|gb|EGD22565.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V +   G D +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYTVDLAVDGMDALEKVAASRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPF---NKEELVARIRAIVR 117
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF        +  +     
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            + G     +   DL+++   + V   G  I LT  E+ ++E+L       L++   L  
Sbjct: 121 PAAGDDSEAMTFEDLTLDPVTREVTRGGRSISLTRTEFALLEMLMANPRRVLSRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K++    +  L+ E + VY  + G +GI+L K  +   +ILDL L DI G EV
Sbjct: 4   ILIIEDEKSVLEVTKAYLEREGYRVYCAENGLEGIKLFKKNDIQLVILDLMLPDIEGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR       + +L+  +S+ DK+ GL  GAD+Y+ KP +  EL AR+ A+ RR    
Sbjct: 64  CKILRKIS-EVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGVE 122

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +   +  L +N   ++V++ G  + LT  E+ ++ LL+  +    T+E  +  ++ 
Sbjct: 123 EPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVFT 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + ID  I  LRKK+   +    YI TV   GY  
Sbjct: 183 MDFEGSDRTIDAHIKNLRKKIEENSKEPRYILTVTRIGYKF 223


>gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     +   I+V I  LR K++      +YI+T+WG G+ +
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228


>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
           fragilis 638R]
          Length = 224

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 124/221 (56%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V + G+ G E  +   FD +ILD+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      TPV +L+ + + ED V+GL SGADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N + +    +   I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSVQQLVCDDLVLNCNTRRARRKEVEIELTVKEYRLLEYFMTHQGMVLSRLTLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+ +    K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKI-DKEHDKKLIHTVVGSGYIM 222


>gi|268316385|ref|YP_003290104.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262333919|gb|ACY47716.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 246

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 6/237 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62
           L++EDD  +A +++   + + + V         +EL    + FD ++LD+ L D  GFEV
Sbjct: 11  LIVEDDADVAQALQDFFELQGYRVTHAPEAHKALELLTNAHRFDVVLLDVMLPDRSGFEV 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R   + TPV +L+G    E  ++G   GADDYI KPF+ +E+ AR+RAI++R++  
Sbjct: 71  LQEMRRRGLETPVLVLTGRGEREQVLQGFGLGADDYIVKPFDPDEVAARVRAILQRTQPP 130

Query: 123 ---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +   GD+ +N           RI+ T  E  ++  L   +   +T+E  L  ++
Sbjct: 131 DRAPMQIYHIGDVEINFSTHEAYRGSERINFTAMELNVLRYLIHHRGEVVTREQLLRDVW 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
               + E + ID  I  +RKK+        YIETV+G+GY LR  A+D++     T+
Sbjct: 191 HIVGDVETRTIDRHIASIRKKIEPDLRQPRYIETVYGKGYRLR--AEDQSTNSPPTS 245


>gi|153835992|ref|ZP_01988659.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149750746|gb|EDM61491.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 243

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +   V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHQVSRESSVAAGRNAYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQQQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPERAEEGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  +   
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSFSDSEHHFIQTVWGVGYKFQPRP 243


>gi|59712003|ref|YP_204779.1| DNA-binding response regulator [Vibrio fischeri ES114]
 gi|59480104|gb|AAW85891.1| DNA-binding response regulator [Vibrio fischeri ES114]
          Length = 218

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   I   L+S ++   ++  G D +      E+DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDLRLGAQIVETLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++  +  V  Q   + LT  EY+++       +  +++   + H+Y 
Sbjct: 121 GNASPILKIGDLSLDTRSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   ++VFI ++RKK+       N I+TV G GY L
Sbjct: 181 QDFDRDSNTVEVFIGRIRKKI-----APNIIKTVRGLGYQL 216


>gi|186684290|ref|YP_001867486.1| two component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186466742|gb|ACC82543.1| two component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 239

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 55/232 (23%), Positives = 116/232 (50%), Gaps = 5/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  + + +   L  + + +     G+  + + + +    +ILD  L D+ G+ 
Sbjct: 10  KILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLPDVNGYS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++ +  V IL+  +   DK++ L +GADD+++KPF+  E+  RI A++RR R 
Sbjct: 69  LCQEM-QSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIRY 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I+   L +N + + V +    + LT  E+ ++  L+   N   ++   +  +
Sbjct: 128 INPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKI 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +      + +++DV I +LRKK+        +I+TV G GY      ++ T 
Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFEAPDENTTS 239


>gi|56130780|ref|YP_145683.1| two component response transcription regulator [Ralstonia
           metallidurans CH34]
 gi|94152513|ref|YP_581920.1| regulator protein CopR [Cupriavidus metallidurans CH34]
 gi|10047062|emb|CAC07978.1| CopR protein [Ralstonia metallidurans CH34]
 gi|56068770|emb|CAI11332.1| two component response transcription regulator [Cupriavidus
           metallidurans CH34]
 gi|93358883|gb|ABF12970.1| CopR regulator from the two components sensor/regulator family
           involved in Cu(II)/Cu(I) resistance [Cupriavidus
           metallidurans CH34]
 gi|222875178|gb|EEF12309.1| predicted protein [Populus trichocarpa]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      +   L    F V +   G DG        +D IILD+ L D+ G+
Sbjct: 1   MKLLVVEDEVKTGEYLRQGLTEAGFVVDLVANGLDGQHFAVNETYDLIILDVMLPDVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R +  + PV  L+   S+ D+VRGL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  HILHAIRASGNAVPVLFLTARDSVADRVRGLELGADDYLVKPFAFSELLARVRTLLRRGA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   I   DL ++L  +     G RI LT KE+ ++EL + R+   L + +  + ++
Sbjct: 121 VQLAMDRIQVADLILDLSRRRASRGGRRITLTSKEFALLELFARRRGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   + +  +IDV I +LR K+ +       I+TV G GYVL   
Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKI-DDGFEVKLIQTVRGMGYVLEAP 224


>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 126/229 (55%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD  +   ++++L+ E + V     G  G+E  K   ++ I+LDL L DI G +
Sbjct: 4   KILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPDIAGEQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + +A+R      P+ ILS   S+ DKV  L+ GADDYI+KPF   EL+ARI+AI+RR   
Sbjct: 64  LCKAIR-KNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +     S++   +  ++++   V+     I+ T KE+++   L   K   ++++  +
Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           N L+   +     + IDV I  +R+K+   + G  Y++T+ G GY L E
Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLEE 231


>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD A+   +   +++E + V     G D I   + ++ D +ILD+ + ++ G+ +
Sbjct: 4   LLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLETFKADLVILDVMMPNMDGYRL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ +L+       K++G   G DDY+ KPF  EELVAR++A+++R R  
Sbjct: 64  CQELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYRIA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S +  G +++N       +    + L  KE++++  L+     TL +E  +  ++   
Sbjct: 124 VSSSVQIGAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            E   + +DV I +LR++   A  G   I TV G GY +  +A
Sbjct: 184 FEGNERTLDVHINRLRERFPEAEAGFR-IATVRGLGYRMEPSA 225


>gi|238764767|ref|ZP_04625710.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
 gi|238697058|gb|EEP89832.1| Two-component system response regulator [Yersinia kristensenii ATCC
           33638]
          Length = 239

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L  E FN  +   G++GI      E+ A+ILD+ L D+ G 
Sbjct: 13  MKILLVDDDVELGNMLREYLSGEGFNAELVLTGKEGIAAALSGEYTALILDIMLPDMSGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 73  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 131

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I   DL++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 132 EHPDAPSADDSVITHSDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 192 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 239


>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
 gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
          Length = 235

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 13/230 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDD A+   + ++L+ E ++V   + G  G+E         +ILD+ +  I G   
Sbjct: 6   ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIMMPGISGIRT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    + PV  L+      DKV GL +G DDY+ KPF+  EL+AR++A++RR    
Sbjct: 65  CEEIRKVS-NVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRRRNVY 123

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  + +    +  GD+ +     +V V+G  ++LT  EY+++ L         +  
Sbjct: 124 DKAAQEEKSNLPEWLKKGDIRICTIQNSVFVRGEEVNLTELEYRLLLLFMEYPQKIFSAR 183

Query: 173 MFLNHLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 ++   +      + V I +LRKK+   A     IETVWG+GY L
Sbjct: 184 NLYESAWEEPFDLGSANTVMVHIRRLRKKVEEDAQNPKLIETVWGKGYRL 233


>gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 17/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+ +   IE+ L+ + + V+    G +G+ + +  E    I+D+ +  + G  
Sbjct: 11  HILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEILLAIVDIMMPRMDGIT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 71  MVIKLREQ-YDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 129

Query: 121 --------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                            +++   G L +N D   + V G  + +T  E++++ LL     
Sbjct: 130 FMKLLEEKEAGGQEKQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 189

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E     +++ R       + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 190 HVFSAEEIYERVWNER-AVNTDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIEKQ 246


>gi|163867922|ref|YP_001609126.1| two-component response regulator [Bartonella tribocorum CIP 105476]
 gi|161017573|emb|CAK01131.1| two-component response regulator [Bartonella tribocorum CIP 105476]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +E        ++ V   G+ G  L     +D +++D  L    G 
Sbjct: 1   MKILVIEDDRETGRYLEKAFLEVGHSIDVAYDGDTGYALATTENYDVMVVDRMLLHRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR     TPV ILS +  + D+V GL++GADDY++KP+   EL+AR+  + RR  
Sbjct: 61  SIITELRAKGNETPVLILSALGQVNDRVTGLRAGADDYLTKPYAFSELLARVEVLQRRKN 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+++    +L ++  A TV+     I L  +E++++E L       +T+ M L +++
Sbjct: 121 PKEAETVYCVSNLELDRLAHTVKRGDRNILLQPREFRLLEYLMRYAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  +IDV I +LR K+         + TV G GY+L+  
Sbjct: 181 DYHFDPQTNVIDVHISRLRAKIEKDFDVP-LLHTVRGAGYMLKAP 224


>gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 223

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L+   + V     G +       +EFD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGLPKLHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R     TPV IL+   S+E +V+GL  GADDY++KPF  +EL AR+RA+ RR  
Sbjct: 61  EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G LS +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 WGDEVSNNAIEVYIHRLRKKIEQ---GPVRIATVRGLGYCLEK 220


>gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFVVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                    +      ++  GDL V+ +   V   G  + LT  E +++   S    T L
Sbjct: 125 AGGGRAEEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVL 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L  ++D     + +++DV + +LR+K+         IETV G GY L+
Sbjct: 185 SRDKLLERVWDYGWGGDTRVVDVHVQRLRQKIGQD-----RIETVRGFGYKLK 232


>gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 222

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL+SGADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   ++V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+ +D++ +   + ++L+SE +NV     GED +        D IILD+ +    G
Sbjct: 1   MKNILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAVIKVDKN-IDLIILDIMMPIKSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R  K S P+  L+  +   DK  G  SG DDY+SKPF+  ELV+R++A++RR 
Sbjct: 60  FKACVEIRE-KTSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLRRY 118

Query: 120 -------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                  + ++   I    L++N+ +  V +    I LT  EY+++ L++  +    + +
Sbjct: 119 YVYKGKEKVNSNEDINIDGLTINISSNEVFIDNKEIILTETEYRILLLMAQNRKKVFSAQ 178

Query: 173 MFLNHLY-DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                ++ +         I V I  LR+KL        YI+TVWG+GY + 
Sbjct: 179 NLYESVWKEPYFYSCNNTIMVHIRNLRRKLEREPQNPKYIKTVWGKGYRIE 229


>gi|238020067|ref|ZP_04600493.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
 gi|237863591|gb|EEP64881.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IEDD  +A+     L    ++V +   G +GIE       D IILD+ L ++ GFE
Sbjct: 4   HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTEGIEAALNTPVDLIILDVMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K+  P+ +++      DK+RGL  GADDYI KPF+   L+A+I+A++ + + 
Sbjct: 64  VCRQIR-DKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      + I +G++ ++     V V    +HL  KE+Q++E L   ++   +KE   
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      +   + V I +LR+++ +      +I TVWG GY   
Sbjct: 183 SRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229


>gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILIVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IEEIRKIK-NTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     +   I+V I  LR K++      +YI+T+WG G+ +
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228


>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 238

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD+ LA      L+S    V     G+ G+      + D +ILDL L    G E
Sbjct: 10  RVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  ++  P+ +L+ +    D+V GL++GADDY++KPF+  EL+AR+RA+VRR RG
Sbjct: 70  VCRELRA-RLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRG 128

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I  GDL ++    +    G  + LT  E+ ++ +L+ R    LT+E  L+  
Sbjct: 129 SLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTREQLLDLT 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               DE   + ID  I +LR KL +       ++TV G GYVL    +
Sbjct: 189 KGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLAAGPE 236


>gi|307329229|ref|ZP_07608394.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306885128|gb|EFN16149.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 20/241 (8%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAAALSAILSRHGFEVTHARSGEEALQALLPDSGAPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV   +R  + +TPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGFEVCGKIR-KRTATPVIMVTARADVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119

Query: 118 RSRGH------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           R+                   +  G +++ L  + V V G  + LT KE+ ++ LL+ R 
Sbjct: 120 RTAPQDTGHGADEGPDGPHPPLRLGPVTIELPTRQVSVNGTTVSLTRKEFDLLALLAQRP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +E  ++ ++    E   + ++V +  LR KL         IETV G GY L   +
Sbjct: 180 GVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRM----PALIETVRGVGYRLVAPS 235

Query: 226 K 226
           +
Sbjct: 236 R 236


>gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 236

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +I  +L+ E +       G + +E     +   I++D+ +  + G   
Sbjct: 8   ILVVDDDRDIVAAIAKLLELEGYKTVRAYDGIEALEKLSENDIQLILIDVMMPRLDGLSA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  +R  K + P+ +LS  S   DK+ GL  GADDYI+KP+N  EL AR+++ +RR    
Sbjct: 68  IMKIR-DKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVKSSLRRYMQL 126

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   +I  G L ++  AK++ V G  + LT  E +++ELL        + E   
Sbjct: 127 GDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENAGHVFSAEEIY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 187 RRVWNEDAYAVENTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235


>gi|210622831|ref|ZP_03293375.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
 gi|210154048|gb|EEA85054.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I  +EDD +L   +   LK + + V      ++  +L +  ++D  ILD+ L D  G++
Sbjct: 3   KIFFVEDDLSLISGLSFALKKQGYEVDNARTIDEAEKLWQNNKYDLAILDISLPDGSGYQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   +R+     P+  L+      D + GL  GADDYI+KPF     ++++ AI+RRS  
Sbjct: 63  LCEKIRL-NSKIPIIFLTAADEETDIIMGLDMGADDYITKPFKLAVFLSKVNAILRRSND 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +++ +  +SVNL    V   G  ++LT  EY+++ L     N  L++E  L  L+
Sbjct: 122 FNQKNTVLNSNGISVNLLNGDVTKNGETLNLTSGEYKLLCLFMENPNIILSQEQILGKLW 181

Query: 180 DG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   D  +   + V+I +LRKK+ +       I TV   GY  
Sbjct: 182 DSNNDFIDNSTLTVYIRRLRKKVEDDPSNPTNIVTVRRMGYKW 224


>gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 231

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L+  + + L+ E + V     G   +   + +  DA++LD+ L D+ G E
Sbjct: 7   RILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV  L+   ++ED+V GL +G DDY++KPF+ EELVAR+R ++RR   
Sbjct: 67  VLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLHR 126

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++V GDL +N +++ V   G  I LT  E++++          L+K   L+ +
Sbjct: 127 STIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDRV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  ++++++  LRKK+   AG    I T+ G GYVLR 
Sbjct: 187 WNYDFGGQANVVELYVSYLRKKI--DAGRPAMIHTMRGAGYVLRP 229


>gi|15842835|ref|NP_337872.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           CDC1551]
 gi|13883164|gb|AAK47686.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           CDC1551]
          Length = 235

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 14  RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 74  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 132

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 133 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 192

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 193 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 231


>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CMR15]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++     D G   ++  +    + ++LDL L    G E+
Sbjct: 16  ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 76  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRS 134

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 135 GAQSDSL--LQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 193 RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRL 231


>gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168]
 gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168]
          Length = 240

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   + D G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLIDHGDRVLPWVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q +     L V+        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQMDAESPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWEADA 236


>gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 265

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|227823552|ref|YP_002827525.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
 gi|227342554|gb|ACP26772.1| two component transcriptional regulator [Sinorhizobium fredii
           NGR234]
          Length = 232

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 113/229 (49%), Gaps = 3/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  L+  +   L    + V        G+        DA+ILD+ L D+ GFE
Sbjct: 4   RVLIVDDDTRLSAMLADYLSGNGYTVKTAATATAGLTDLGRRAPDAVILDVMLPDLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+AR++AI+RR  G
Sbjct: 64  TCRRIRAVS-DVPILMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A        G L ++  +++V + G    LT  ++ ++  L+     TL++E  ++ + 
Sbjct: 123 SATVSRTFRFGRLEIDPGSRSVRIDGRVCALTSYQFDLLVALAENAGRTLSREQLMDAVK 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               E   + IDV + ++R  + +       I TV G GYV      DE
Sbjct: 183 GEELEAFDRSIDVHVSRIRAAIESDPRHPRRIITVRGAGYVFARFQDDE 231


>gi|300867327|ref|ZP_07111985.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
 gi|300334681|emb|CBN57151.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
           6506]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 121/222 (54%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  S+   L ++ + V     GE   +  + + +D I+ D+ L  + G 
Sbjct: 1   MRILLVEDDSQLIASLTEALVAQRYIVDSARDGESAWDKTQGFVYDLILTDVTLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR     +P+ +L+   +  DKV GL +GAD Y+ KPF  +EL+A+IRA++RR +
Sbjct: 61  GLCERLRDRGYLSPILMLTARDTSLDKVIGLDAGADVYMVKPFQLQELLAQIRALLRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ +G+LS++  +  V  +   IHLT KE+ ++E L       L++   +  ++ 
Sbjct: 121 SGMSPILRSGNLSLDPASYEVIYERSPIHLTPKEFALLEALLRYGKRVLSRSAIIEQVWT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ PE   I  +I  LR KL  A   K+ IETV G GY L+
Sbjct: 181 WQESPEEDTIKTYIKNLRAKLKAAGAPKDLIETVHGVGYRLK 222


>gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ ALA  +   L+SE F V   + G++          D +ILD  L  + G E
Sbjct: 19  RILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWMLPGVSGLE 78

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   PV +L+      ++VRGL  GADDY+ KPF+  EL+AR+ A++RR+
Sbjct: 79  ICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRRA 138

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     + +V GD+ ++ + + V+  G  IHL   E++++E L  +     ++   L+ +
Sbjct: 139 RPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLDSV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + +DV + +LRK +      K+ I TV G GY   E 
Sbjct: 199 WGLSAEIDERTVDVHVGRLRKAI-IRGREKDPIRTVRGTGYSFDET 243


>gi|264676960|ref|YP_003276866.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
 gi|262207472|gb|ACY31570.1| two component transcriptional regulator, winged [Comamonas
           testosteroni CNB-2]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+A +I   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 1   MQVLLLEDDPAIARTICYALEREGIAVTHSLLIADARQQWSRTAFDVLLMDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRSR
Sbjct: 61  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSR 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A    +   L ++   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 121 QFQPAAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    E   + +D  I  LR KL      +  I T  G GY L +  
Sbjct: 181 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQPG 227


>gi|153815072|ref|ZP_01967740.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
 gi|145847640|gb|EDK24558.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756]
          Length = 211

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 63/215 (29%), Positives = 117/215 (54%), Gaps = 6/215 (2%)

Query: 12  LAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPGFEVLRALRVAK 70
           +   ++  L  E + V     G + +++  +  E   +ILD+ +  + G++V R +R   
Sbjct: 1   MRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMDGWQVCREIRETS 60

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-AQSLIVT 129
              P+ +L+  S   D+++G + G D+YISKPF+ + LVAR+ AI+RR+ G+ A  +I  
Sbjct: 61  -KVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLGNTAGDVIEA 119

Query: 130 GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKI 189
           GD+ ++  A  V++    I L+ KE++++      +   L++E  LN++++     + + 
Sbjct: 120 GDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWNYDYFGDART 179

Query: 190 IDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ID  + KLR KL +      YI+T+WG GY    N
Sbjct: 180 IDTHVKKLRSKLGDRG---EYIKTIWGMGYKFEVN 211


>gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR    + PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G+L +  +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +  E   ++V I  LRKK  +       I  + G GY+
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSD-----LIRNIRGVGYI 215


>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 222

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   +    +   F     + G   IE  K   FD +ILD+ +  + GF 
Sbjct: 3   KILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++      PV +LS      DK+ G + G DDY++KPF+ +EL+ARI+ ++ R + 
Sbjct: 63  TCKQIKSI-DQVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLERGKK 121

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +++   L +++  + V V G +  LT KE  ++  L+   N  L++E  L  ++
Sbjct: 122 TQANSDVMIFKGLQIDVLGRVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETLLVEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     + + +D  I  LR  L      +++I TV G GY   
Sbjct: 182 NYDYFGDDRTVDTHIKMLRHNLGPY---RDFITTVRGMGYKFE 221


>gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 223

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 119/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  +       LK+  + V   +      +  +      I+LD+ L    G ++
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  K     PV +++  +S  DKV+GL  GADDYI+KPF   EL++R++A++RR S
Sbjct: 64  LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  S ++  D+ +++D   V V G    LT KE+++++ L L +   L+++  ++ ++
Sbjct: 124 RMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E + +D+ I  LR+KL  A      I+TV   GY++ 
Sbjct: 184 GFEYEGESRTVDMHIKTLRQKLGAAGSC---IKTVRNVGYMIE 223


>gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD      +      +  N+     G  G+ L    ++D IILD  L  + G 
Sbjct: 1   MKILMVEDDATTIEYVVKGFVEQGHNIETATDGHQGLLLATSMKYDLIILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS +S ++++V+GL++G DDY++KPF   EL+ R   +++R  
Sbjct: 61  KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGE 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G L++ L  + V + G  I L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  ++L L+ E + V  T  G  G+E      +D IILD+ L  + G E
Sbjct: 5   KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV +L+    I DKV GL  GA+DY++KPF  EEL+ARIR + +    
Sbjct: 65  VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +      G L +++    V  +   I LT KE+ +++ L + K+  L++E  L  +
Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I+DV+I  LR K+ +    K YI T+ G GY  R
Sbjct: 184 WGYDYLGDTNIVDVYIRYLRSKI-DDKFNKKYIYTIRGLGYQFR 226


>gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + ++EDD  LA  +   L++E F V     G +  +  +    + IILD+ L    G  +
Sbjct: 6   VYVVEDDIDLAEILTFNLENEGFEVKHFTNGNEFFKTMEQTIPNIIILDIMLPGYDGVRI 65

Query: 63  LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR        P+  L+  S  EDK+ G  +GADDYI+KPF+ +EL+ARIRA++ R +
Sbjct: 66  AKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRYK 125

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   +L ++ D   V + G  I+LT  E+++++ L    +  +T++  +N L+
Sbjct: 126 KTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINMLW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + +DV I  LR KL +      YI T+ G GY  
Sbjct: 186 SYGTDINDRTVDVHIKHLRDKLGDFG---KYIRTIRGVGYKF 224


>gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           CFT073]
 gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073]
 gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972]
 gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS
           185-1]
 gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS
           45-1]
 gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU
           83972]
 gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS
           153-1]
          Length = 219

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
 gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
           49185]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+K +   ++L L+ E ++V     GE+G+E  K   +D I+LDL +  + G EV
Sbjct: 9   ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGEEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+    I +KV  L  GADDY++KPF  EEL ARIR  +R     
Sbjct: 69  CKIIRKTS-NIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSNF 127

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           + +  +  D L +NL    +      I LT  EY +   L L K   +++E  LN ++  
Sbjct: 128 SNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E KI+DV+I  LRKK+        +I TV G GYVL++ +
Sbjct: 188 DYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKES 229


>gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
          Length = 222

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
 gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 58/227 (25%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L  E + V     G +G++  K  +   IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R      +T +  L+       +V G  +GADDYI+KP   + L+++++A++RR
Sbjct: 66  EACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +      +++  G+L++N +   + + G  I L  KE++++ LL+ +      +E  L 
Sbjct: 126 LKAEEGNATIVKVGNLTINKEEYKIILDGKEILLPKKEFELLSLLASKPGKVFKRENILE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + IDV I K+R K+ + +     I+T+ G GY   E
Sbjct: 186 RIWGNEVVVGGRTIDVHIRKIRDKIGDKS-----IKTIKGVGYKFIE 227


>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K  +V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTICYKGIELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
 gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
           (two-component), ColR [Azotobacter vinelandii DJ]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 125/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + + V     G  G+ L    ++D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V   LR  A   TP+ +L+   +++D+++GL SGADDY+ KPF   ELVARI A++RR+
Sbjct: 61  QVCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRRT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDL  +LD   V   G ++ L    Y+++ +L  +    + +E   N L+
Sbjct: 121 QGSRKRQLQVGDLIYDLDTLNVSRAGKQLRLNPIGYKLLAILMQKSPAVVRREFLENALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D PE   +   I +LR+ L +    K  + T+ G GY L EN 
Sbjct: 181 G-DDLPESDSLRSHIHQLRQAL-DKPFDKPLLHTIHGVGYRLAENP 224


>gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 226

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVDGAISGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +SL  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESLAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL    G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALPGNTMTIETVRSVGYRIR 226


>gi|269797462|ref|YP_003311362.1| transcriptional regulator [Veillonella parvula DSM 2008]
 gi|282849136|ref|ZP_06258521.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313893989|ref|ZP_07827555.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
 gi|269094091|gb|ACZ24082.1| two component transcriptional regulator, winged helix family
           [Veillonella parvula DSM 2008]
 gi|282580840|gb|EFB86238.1| response regulator receiver domain protein [Veillonella parvula
           ATCC 17745]
 gi|313441553|gb|EFR59979.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 229

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IEDD  +A+     L    ++V +   G DGIE       D IILD+ L ++ GFE
Sbjct: 4   HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K+  P+ +++      DK+RGL  GADDYI KPF+   L+A+I+A++ + + 
Sbjct: 64  VCRQIR-DKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      + I +G++ ++     V V    +HL  KE+Q++E L   ++   +KE   
Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      +   + V I +LR+++ +      +I TVWG GY   
Sbjct: 183 SRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229


>gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 19/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     +   A  ++  G+L ++ +   V   G  + LT  E +++   S    T 
Sbjct: 125 AGGTDRGEVSADAAAGGVLTFGELEIDTEGMEVRRAGQPVALTPTEMRLLLEFSSAPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 233


>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 233

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 121/226 (53%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   +   ++ E +       G++ +++    + D ++LD+ + ++ G E 
Sbjct: 8   ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR ++   PV +++  S   D+V GL+SGADDYI KPF+ +EL+ARI A +RR+ G 
Sbjct: 68  LRELRTSR-RIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGY 126

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++  +    + VNL+++ V + G  + LT KE+ ++            +E  L+H+
Sbjct: 127 NDDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLDHV 186

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         + +D  +  +R K+     G +Y  TV+G GYVL +
Sbjct: 187 WGVNYTTGGHRTVDTHMKTMRFKMG---SGGDYFRTVYGVGYVLED 229


>gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 305

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 68  QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 127

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 128 ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 187

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ + G    L+  E+ ++++       TLT+E  
Sbjct: 188 TPSAAAPEQREPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRERL 247

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 248 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 299


>gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 230

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +A  +   L+   F V  T  G + + L    +   ++LDL L D+ G  +
Sbjct: 5   ILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTEQPALVVLDLMLPDLSGESI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L+      PV IL+  SS E+++ G   GADDYI KPF+  ELVAR++A+++R+   
Sbjct: 65  CRELKE--CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVLKRTGAT 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                     G L ++    +V  QG  I LT  E++++  L+   + T T+E  +    
Sbjct: 123 ENGARLSFNGGQLVIDDRNYSVVCQGTDIRLTAVEFKILFALAAVPHKTFTREELVVKAM 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + ID  I  +R KL ++     ++ TV+G GY  
Sbjct: 183 GSHFDGYDRNIDSHIKNIRHKLEDSPKAPTFLITVYGLGYRF 224


>gi|93007149|ref|YP_581586.1| two component transcriptional regulator [Psychrobacter
           cryohalolentis K5]
 gi|92394827|gb|ABE76102.1| two component transcriptional regulator, winged helix family
           [Psychrobacter cryohalolentis K5]
          Length = 238

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L      V +   G   I      + D ++LD+ L    G  
Sbjct: 11  RILIVEDDERLAMLTQDYLVKNGLEVAIETDGNRAIRRIVSEQPDLVVLDVMLPGSDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 71  VCREVRP-HYQNPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G+L ++   ++V +    +  T  EY ++ LL+      L++E     
Sbjct: 130 APSEDVPQRLEFGELVIDNGGRSVNLGDELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ +       I+TV  +GY+  +  
Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237


>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 227

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPEMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQRS-HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSP 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ 
Sbjct: 122 ETVESGTATLAAGPVRMDIERHVVTVDGSTVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR K+        +I TV G GY    
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEPEPSSPRHIVTVRGLGYKFEP 227


>gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
 gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas sp. AL212]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + +     G++G+ L   Y  DA I+D+GL    G 
Sbjct: 1   MRILVIEDEFKLQNQIRQQLETAGYMIDTCSDGDEGLFLASEYPLDAAIIDIGLPGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR      P+ IL+  SS +DKV+GL+ GADDY++KPF  EEL+AR++A++RR+ 
Sbjct: 61  EIIKTLRERGNLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELLARVKALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A++V +    I LT  EY+++E L       L+K    ++LY 
Sbjct: 121 GIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEYRLLEELVRHHGEVLSKHTLSDYLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +++V I +LR+KL    G  N IET+ GRGY  
Sbjct: 181 HDEDRDSNVLEVMIGRLRRKLDPD-GTLNPIETMRGRGYRF 220


>gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 300

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 121/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 58  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 117

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 118 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 177

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 178 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 237

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     I+V++  LRKK+  +      I TV G GY L + A
Sbjct: 238 WGEEVSNNAIEVYVHGLRKKIEPSG---VRISTVRGLGYCLEKVA 279


>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 234

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 11/228 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTD 56
           M+  IL+IED++++++ +E  L  E +NV+    G  G+++ +  +   D ++LD  +  
Sbjct: 13  MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR ++      PV  ++    + DKV GL +GADDY++KPFN EEL+AR+R I 
Sbjct: 73  LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIF 132

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           R  +    ++   G +S+N    TVE Q     LT +E+ ++  L   +   ++++  L 
Sbjct: 133 R--KNTQPAIYSYGTVSLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILE 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      ++  +D ++  LRKKL      KN IET+ G GY L ++
Sbjct: 191 EVWGMNFGGQLNTVDTYVRYLRKKLD-----KNMIETIRGLGYRLNKD 233


>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+++L   ++  L+ E F   +   GE+G+ +     FD I+LD+ L  + G+
Sbjct: 1   MKILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R +    PV +L+ + SIEDKVRG   GADDY+ KPF+  ELV RI++++RR++
Sbjct: 61  QVLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRRAQ 120

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G    ++  GDL +++  KT      +I L  KEYQ++E L L     + K     HL
Sbjct: 121 FGGAPSRVLRVGDLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRVVPKSELEEHL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           ++  DE    +I   I  +RKK+ +    K  I+TV G GY
Sbjct: 181 WNEDDELWSDVIRSHIKNIRKKV-DGGRRKKLIKTVRGMGY 220


>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 232

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DDK L   +   L +E F V +   G+  +EL +   +  I+LD+ L    GF+
Sbjct: 3   KILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR     TPV +L+      D+V GL+ GADDY++KP +  ELVARIRAI+RR+  
Sbjct: 63  VLKILRQ-HSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRRASI 121

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      + +G LS++L  +T       + LTG E+ ++E+L  R    ++K+    
Sbjct: 122 AEANQPNVERLTSGKLSLHLGTRTATWDNQDVVLTGTEFSVLEILVRRAGQVISKDDMTE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  P  + IDV +  +RKK++ A   K+ I  V G GY+L
Sbjct: 182 QALNRKLTPYDRSIDVHVSNIRKKIALAGSTKDLIINVRGAGYML 226


>gi|159040471|ref|YP_001539724.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157919306|gb|ABW00734.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 5/218 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +A  + L L  + F V++   G+ G+   +     A +LD+ L  +PG E+
Sbjct: 11  VLLVEDEATIADLVRLYLNRDGFGVHLERDGDAGLAAARRLRPVACVLDIALPGLPGTEI 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A   TPV  L+      D+V GL+ GADDY++KPF+  ELVAR+RA++RR  G 
Sbjct: 71  CRRLREAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRRVAGP 130

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G ++++ D +TV   G  + LT  E+ ++  L  R     T+E  L  ++  
Sbjct: 131 PPGQPRRVGVVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVFTREELLAGVWGY 190

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 +  DV + ++R KL    G  + I T  G GY
Sbjct: 191 AVPAGTRTADVHVAQVRAKL----GSASVIRTHRGVGY 224


>gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016]
 gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 231

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  ++L L+ E + V  T  G  G+E      +D IILD+ L  + G E
Sbjct: 8   KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV +L+    I DKV GL  GA+DY++KPF  EEL+ARIR + +    
Sbjct: 68  VLRRLRQIS-EIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 126

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +   +      G L +++    V  +   I LT KE+ +++ L + K+  L++E  L  +
Sbjct: 127 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +  I+DV+I  LR K+ +    K YI T+ G GY  R
Sbjct: 187 WGYDYLGDTNIVDVYIRYLRSKI-DDKFNKKYIYTIRGLGYQFR 229


>gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 225

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + + FD  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V + +LR+KL   A G   I+TV G GY+  E
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLE-GARGFKPIDTVRGLGYLFTE 222


>gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
 gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
          Length = 228

 Score =  253 bits (648), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L SE + VY    G +G+E  +      IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R  K    + +  L+  +    +V G  +GADDYI+KP   +  +++++A++RR
Sbjct: 66  EACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRR 125

Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +      + ++  G L +N +   V  +G  + L  KE++++ LL+ + +    +E+ L
Sbjct: 126 LKNQEGSGEDILKVGKLVINREEYKVVNKGEELTLPRKEFELLALLASKPDKVFKREVIL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++        + IDV I KLR+K+  +     + +TV G GY   E
Sbjct: 186 DKVWGQEVVVGGRTIDVHIRKLREKIGES-----HFKTVKGVGYKFVE 228


>gi|330811233|ref|YP_004355695.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379341|gb|AEA70691.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 240

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ LA      L+S    V +   G          + D ++LDL L    G  
Sbjct: 7   QVLIVEDDQRLAELTREYLESNGLRVAIEGDGAVAAARIIAEQPDLVVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+++GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRKVR-GHYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARIQALLRRSEP 125

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q  +  G L V+   +   +QG+ I LT  E+ ++ LL       L++E    
Sbjct: 126 EPSVAQKQRRLQFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVSNAGRILSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L     + + + IDV I ++R K+ +       I+T+  +GY+    A
Sbjct: 186 ALRGIGYDGQDRSIDVRISRIRPKIGDDPDHPRLIKTIRSKGYLFVPEA 234


>gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces
           scabiei 87.22]
          Length = 229

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E +       GE+ +     +  D ++LDL L  + GF 
Sbjct: 5   RLLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLMLPGVDGFG 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS G
Sbjct: 65  VLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSAG 124

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  +S++   DLS++ D + V      + LT  EY+++  L  +  T LTK   L+H++
Sbjct: 125 PAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        ++++ + +LR+KL +   G+  I TV G GYVLR+  +
Sbjct: 185 EYGFGGRSNVVELVVSRLRRKLDDT--GEPLIHTVRGFGYVLRQATE 229


>gi|254975306|ref|ZP_05271778.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092696|ref|ZP_05322174.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255314435|ref|ZP_05356018.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517111|ref|ZP_05384787.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650217|ref|ZP_05397119.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683335|ref|YP_003214620.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686931|ref|YP_003218064.1| two-component response regulator [Clostridium difficile R20291]
 gi|260209498|emb|CBA63052.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212947|emb|CBE04223.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score =  253 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 117/234 (50%), Gaps = 15/234 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+L+I+D+  +   +E +LK E  N +Y     ++G+EL K    D I+LD+ L D  G+
Sbjct: 4   RVLIIDDEVEILKLLETVLKKEGLNNIYTAKTKKEGLELFKSINPDLIVLDIMLPDGEGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R    S P+  LS  +   DK+ GL  G DDY++KPF+ +E+  R++A +RR  
Sbjct: 64  DICKEIRKTSNS-PIIFLSAKTEELDKLLGLAIGGDDYVTKPFSPKEVAFRVKAHLRRLS 122

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                         + + +I  G   +N     +   G  I L+ KE +++ L +  +N 
Sbjct: 123 YFSDVQNESKNLNKNEEKIISFGPYILNESRAELIKDGKSIGLSAKELKILSLFAHNQNQ 182

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++KE   + ++          I V I K+R+KL +      YI T+ G GY L
Sbjct: 183 IISKEKLWDKVWGEDYVGFDNTIMVHIRKIREKLEDNPSKPEYILTIKGLGYKL 236


>gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
 gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis
           L1-82]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  +       LK+  + V   +      +  +      I+LD+ L    G ++
Sbjct: 4   IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           L  +R  K     PV +++  +S  DKV+GL  GADDYI+KPF   EL++R++A++RR S
Sbjct: 64  LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +  S ++  D+ +++D   V V G    LT KE+++++ L L +   L+++  ++ ++
Sbjct: 124 RINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E + +D+ I  LR+KL  A G    I+TV   GY++ 
Sbjct: 184 GFEYEGESRTVDMHIKTLRQKLGAAGGC---IKTVRNVGYMIE 223


>gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 222

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RRS 
Sbjct: 61  EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  + +  L+++   ++V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG +E +  +I+V +  LR+KL  A      +ET  G+GY+
Sbjct: 181 DGENERDSNVIEVHVNHLRRKLGRA-----VVETRRGQGYL 216


>gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V + G  + LT KEY ++ +L+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLDGVEVALTRKEYALLAILAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + + +  LR+KL +      +I T  G GY L   
Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229


>gi|148543652|ref|YP_001271022.1| two component transcriptional regulator [Lactobacillus reuteri DSM
           20016]
 gi|184153066|ref|YP_001841407.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227363377|ref|ZP_03847503.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|325682015|ref|ZP_08161533.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
 gi|148530686|gb|ABQ82685.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri DSM 20016]
 gi|183224410|dbj|BAG24927.1| two-component system response regulator [Lactobacillus reuteri JCM
           1112]
 gi|227071566|gb|EEI09863.1| response regulator [Lactobacillus reuteri MM2-3]
 gi|324978659|gb|EGC15608.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL+IED+ ++   + +  K E ++      G +  E      +++D I+LDL L    
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWHCEFAYDGVEAEEKFNADPHKWDIILLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 SRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           +  +               I T +  +N   + V + G  +  LT KE+ +++ L+ +  
Sbjct: 121 THLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTLASKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY   +   
Sbjct: 181 QVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKFDDEGN 238

Query: 227 D 227
           D
Sbjct: 239 D 239


>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 244

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 117/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD  L   +   L  E   V     G  G E     E   ++LD+ L  I GFE
Sbjct: 3   RILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+      D++ GL+ GADDY+SKPFN  ELVARIRAI RR++ 
Sbjct: 63  VLRRIRA-GSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAIQRRAQP 121

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +V GD+ V+  A  V  +GH + LT  E+ M+E+L       +++E
Sbjct: 122 SVERETGTGKAVERVVVGDVEVDPGAHIVLQRGHPVDLTSVEFTMLEVLLRASGQVVSRE 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                    R  P  + IDV I  LR+KL +  G    I+TV G GY+
Sbjct: 182 DLAKQALGRRLSPYDRSIDVHISSLRRKLGHQLGDTERIKTVRGMGYL 229


>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 129/226 (57%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L  ++++ L++E + V V   G D + L      D ++LDLGL DI G +
Sbjct: 3   RILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEGAD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS      DKV  L +GADDY++KPF  +EL+AR+RA+ RRS  
Sbjct: 63  VIRGIRAWS-DLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERRSAH 121

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I TG+L ++L A TV   G R+HLT +E+ +++LL   +   +T+   L  ++
Sbjct: 122 TPAGVAVIQTGNLLIDLGAATVTRNGKRVHLTPREWDVLQLLVTNRGKLITQRQLLQTVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               + E + + V++ +LR+KL        ++ T  G+GY   E  
Sbjct: 182 GPAYQEETQYLRVYMAQLRRKLETDPAHPKHLITAAGQGYRFDETP 227


>gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDDK L   I ++LK     V       + + L     F+ I+LD+ L D  G E
Sbjct: 3   RILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINLPDRSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  ++   + +D V G  +G DDYI+KPF+ E +  RI+A++RR+  
Sbjct: 63  LCNEIR-KKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +S+  +G++S+N +   V      + LT  EY+++ LL+      LT+++ L  L+  
Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWGT 181

Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +   +   + V + +LR+K+ +      YI+TV+G GY   E +
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGEES 226


>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 243

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL  +DD  +   + ++L+SE + V   + GE    +     FD IILD+ +    GF 
Sbjct: 18  KILFADDDPEIREVVRILLESEGYQVVEAENGEQAASMAD-DTFDLIILDVMMPGRNGFS 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  +++TP+  L+  +   DK  G  +G DDY+SKPF+  EL AR++A++RR   
Sbjct: 77  ACAEIRR-RLNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRYHI 135

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I   DL +      V   G  I LT  EY+++ LL+  +    T E   
Sbjct: 136 YKGKEEDGEESIAVKDLVIQKSFNEVMKNGGEILLTDLEYRILLLLASNRGKLFTIENIY 195

Query: 176 NHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++           + V I  LRKKL        YI  VWG+GY + 
Sbjct: 196 ESVWGEAYYYSANNTVMVHIRNLRKKLEADPKNPKYIVNVWGKGYRIE 243


>gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
 gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  +   L   N    +   G   +EL     FD I+LDL L    G  
Sbjct: 3   KVLIVEDEVKIAQLLTDYLVQSNLETVMVHDGNAVLELVHNQYFDIILLDLMLPGKDGIT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR++ 
Sbjct: 63  LCKEIRQFS-AVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARVKAVLRRTQS 121

Query: 122 HAQSLIVTGDL-------SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             QSL  +  +        ++ +     V G  + LT  E+ ++++L+       ++   
Sbjct: 122 QTQSLDKSDTIKSTPKVVELDPEKYQARVFGIPVELTAIEFNLLQILAKEPGRIYSRSQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +NH+Y        + ID  I KLRKKL++       +++V+  GY L 
Sbjct: 182 MNHVYHDHRVVSERTIDSHIKKLRKKLNDIKPDMELVQSVYSVGYKLE 229


>gi|87119833|ref|ZP_01075730.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86165309|gb|EAQ66577.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 220

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L   I+  L  E + V     G+ G+      +FD ++LDL L  + G 
Sbjct: 1   MRVLLVEDDELLGKGIKKSLTREGYQVDWLMDGKQGLAALNTEQFDLLLLDLNLPGMGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L A+R  +++TPV IL+   S++DK++GL  GADDY+ KPF   EL AR+RA+ RR  
Sbjct: 61  DILSAIRKQQLNTPVLILTANDSLDDKIQGLDLGADDYLPKPFEIAELKARMRALSRRHH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH++  I  G L +N  +  V + G  + L  +E+ ++          L++    + +Y 
Sbjct: 121 GHSEPTIQFGRLHINPASMQVTLDGKDLTLGRREFTLLMEFVNHPGQILSRAKLEDVVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   I+V I  LRKK+        +I+TV G GY   + A
Sbjct: 181 WDGDVESNSIEVHIHHLRKKV-----YPEFIKTVRGMGYKAEKPA 220


>gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
 gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
          Length = 237

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 117/225 (52%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K ++  ++  L  +N+ V+    G++ +E+    E D +ILDL L  + G 
Sbjct: 4   IKILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLMLPKLSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K   PV I S      D++ GL+ GADDY++KPF+ +ELV R++A++RR  
Sbjct: 64  EVLKNIR-NKSKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIE 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L        G  + LT  E+ +I  L    N   T++  +
Sbjct: 123 KYNIPRADIIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEII 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +      YI+T++G GY 
Sbjct: 183 ELTFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 238

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 122/232 (52%), Gaps = 16/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   I  +L +E ++V     G + I+  ++++   +ILD+ +  + G+E 
Sbjct: 8   VLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMPKLDGYET 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR      PV +L+  S   DKV GL++GADDY++KPF + EL+AR+ AI+RRS  +
Sbjct: 68  LDILRKQSG-LPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126

Query: 123 AQ-----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                               +++N  +K V V  + + LT KE++M+EL         ++
Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186

Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           E  L  ++         + +D  +  LR KL +A+    +I+TVWG GY L 
Sbjct: 187 EQLLEAIWGMDYLSASSRTVDTHVKTLRLKLRDASA---HIQTVWGIGYKLE 235


>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 219

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++     D G   ++  +    + ++LDL L    G E+
Sbjct: 2   ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 62  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRS 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 121 GAQSDSL--LQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 179 RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRL 217


>gi|152965772|ref|YP_001361556.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151360289|gb|ABS03292.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA ++   L +E   V +   G  G    + + +D ++LDL L    G+
Sbjct: 1   MRVLLVEDEVLLADTVRRGLAAEGVEVDLAHDGPTGYRRAREHAYDVLVLDLMLPGRNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A + TPV +L+      D+V     GADDY++KPF+   L+AR+RA+ RR  
Sbjct: 61  EVCRDLRAAGVWTPVLVLTAKDGEYDQVDAFDLGADDYLTKPFSFPVLLARLRALHRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL ++   + V      + LT +E+ ++E L  R++  + K   L  ++D
Sbjct: 121 PERPVVLRAGDLVLDPATRRVHRGETPLTLTAREFALLEFLLRRRDEVVPKAEILRAVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +  +++V++  LR+K+ +A   ++ ++TV G GY L  + 
Sbjct: 181 PEVSTDPNVVEVYVGYLRRKV-DAPFARHALQTVRGAGYRLAADG 224


>gi|90410002|ref|ZP_01218019.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
 gi|90329355|gb|EAS45612.1| hypothetical DNA-binding response regulator [Photobacterium
           profundum 3TCK]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD      I   L+   F V   D G  G+ +    E+  +ILD  L  + G 
Sbjct: 1   MKILVIEDDLTTREFIAKGLREHGFVVDEADDGHKGLMMATSCEYQLVILDRMLPILDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL A+R  +  TP+ ILS M S+ED+V GL +G+DDY++KPF   EL+AR + +V+R  
Sbjct: 61  KVLAAIRATENQTPILILSAMDSVEDRVTGLTAGSDDYLTKPFALAELIARAQILVKRHH 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  +  V  DL +++ +  V      ++L  KE+ +++ L       +++      +
Sbjct: 121 SSTKIVTEYVYDDLRLDMKSHRVWRGERLLNLQQKEFLLLQYLLEHAENVVSRMSLFESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P+  +IDV I  LRKKL    G  + I T+ G GYVLR
Sbjct: 181 WSYHFDPKTNVIDVHIANLRKKLEEN-GELSLIHTIRGAGYVLR 223


>gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G    +   +DA+ILDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPWDAVILDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILREWRQQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G++ +   + +V  +G  I L  +E  ++EL     +  LT+      LY 
Sbjct: 121 GQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              +     ++V I  LRKKL     G  +I T+ G GY L     D+
Sbjct: 181 WDADVSSNAVEVHIHHLRKKL-----GSTFIRTLHGVGYTLGAAECDQ 223


>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 232

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDNETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLMV 229


>gi|257093200|ref|YP_003166841.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045724|gb|ACV34912.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 250

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 6/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L   +   L    F+  +           + Y+   ++LDL L    G  
Sbjct: 13  KILLIDDDSELRPLLATYLGRHGFDTLLLPDTRQLDAFLQRYQPHLLVLDLMLPGEDGLA 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR    + PV +L+      D+V GL+ GADDY+ KPF+  ELVARI A++RR   
Sbjct: 73  ACRRLRARGETLPVIMLTARDEPVDRVIGLEMGADDYLGKPFDPRELVARIEAVLRRGTR 132

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A +       +  G+   +  A+ +   G  + LT  E+ ++  L    N  + +E  L
Sbjct: 133 PAAAPDPEGGLVCFGEWLFDRGARQLSRNGQVVALTSGEFALLNALVANANRPMKRERLL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   E   + IDV I +LR+ +        Y++TVWG GYV   +A
Sbjct: 193 ELTRGESTESFDRAIDVQIHRLRRLIEVDQAHPRYLQTVWGVGYVFVPDA 242


>gi|261418666|ref|YP_003252348.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319765481|ref|YP_004130982.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261375123|gb|ACX77866.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317110347|gb|ADU92839.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + +L+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  LDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +     ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEEKVAFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +  +K ID  I  LRKKL +       I+TV G GY + ++
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKDD-----VIQTVRGVGYKIDKS 221


>gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC
           43243]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL ED+K L++++  +LK+ N+ V     G D  +     ++D IILD+ +    G 
Sbjct: 1   MKLLLAEDEKELSNALVAVLKANNYIVDAVYDGADAYDWAVTDDYDGIILDIMMPKRNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR   I TPV +L+  S +ED+V GL +GADDY++KPF  +EL+ARIR + RR+ 
Sbjct: 61  DVLAQLRKDGIKTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRRTA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +A   +    + +N     +E  G  + L  KEYQM+E+L   K   ++ E F+ H++ 
Sbjct: 121 SYAPDTLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +  V ++ V I  LR+KL+        I+ V G GY L    +
Sbjct: 181 YETDINVNVVWVNISNLRRKLTQ-INAPVEIKAVRGLGYRLEGTGE 225


>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRW 220


>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
           [Bacillus selenitireducens MLS10]
 gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
           [Bacillus selenitireducens MLS10]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IEDD  +A  + L ++ E + V +   GE+G+      E D +I+D+ L ++ G 
Sbjct: 1   MHVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R      P+ IL+G    +D VRGL +GADDY+ KPF  +EL+AR+++++RRS 
Sbjct: 61  DICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSF 120

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +A S      G+ S++ +     + G  I    +E +++ LL   K  TL++E  L+ +
Sbjct: 121 PYAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + + + +DV + ++R+KL         + TV G GY + 
Sbjct: 181 WGKDFDGDPRTVDVHMKRIREKLRT-FESDWSLVTVRGVGYRIE 223


>gi|255657296|ref|ZP_05402705.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296451852|ref|ZP_06893571.1| response regulator [Clostridium difficile NAP08]
 gi|296879752|ref|ZP_06903726.1| response regulator [Clostridium difficile NAP07]
 gi|296259331|gb|EFH06207.1| response regulator [Clostridium difficile NAP08]
 gi|296429223|gb|EFH15096.1| response regulator [Clostridium difficile NAP07]
          Length = 276

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 47  KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGI 106

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+V R++A +RR +
Sbjct: 107 EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIVFRVKAQLRRQQ 165

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      S+I  GD++++++   V      I LTG+EY ++  ++   N  + KE   
Sbjct: 166 YQSIVPSDSSVIKIGDITIDIEGNRVYKDRKEIELTGREYHLLSYMAQNVNKIIGKERLY 225

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 226 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 272


>gi|298491352|ref|YP_003721529.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233270|gb|ADI64406.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 233

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD ++ + +   L  + + +     G+  + L + +    +ILD  L D+ G++
Sbjct: 5   KIMIVDDDFSVRNLVYRFLSRK-YRIESAADGKSAMALFEQFNPALVILDWNLPDVNGYK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++ +  V IL+  +   DK+  L +GADD+++KPF+  E+  R+ A++RR R 
Sbjct: 64  LCQEM-QSRTNVLVLILTSRNDEADKISVLAAGADDFMTKPFSLAEVEVRVEALLRRIRY 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +V   L++N + + V +    + LT  E+ ++  L+       ++   +  +
Sbjct: 123 IHPSQSQRLVFKQLAINPEGREVTLNDKPLALTALEFNILHFLASHPGQAWSRPQLIQKI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + +++DV I +LRKK+   +    +I+TV G GY     
Sbjct: 183 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFEPP 228


>gi|86739863|ref|YP_480263.1| two component transcriptional regulator [Frankia sp. CcI3]
 gi|86566725|gb|ABD10534.1| two component transcriptional regulator, winged helix family
           [Frankia sp. CcI3]
          Length = 235

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 12/234 (5%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD A+  S+E  L+ E + V     G D +++      D ++LD+ +  + G E  R
Sbjct: 1   MVDDDAAVRESLERSLRFEGYEVATAVDGADALDVIGRERPDIVVLDVMMPRVDGLETCR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            LR      PV +L+    + D+V GL  GADDY+ KPF  EEL AR+RA++RR      
Sbjct: 61  RLRAQGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRAALAAR 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                SRG   S +  G + ++  ++ V      + LT  E++++EL        L++ M
Sbjct: 121 VRAAGSRGIPDSTLRYGGVCLDQVSRQVTRGDRELILTKTEFELLELFLAHPRQVLSRSM 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +  ++     P    ++VF+  LR+KL    G    + TV G GYVLRE + D
Sbjct: 181 IMERVWGYDFGPTSNSLEVFVSYLRRKLEAN-GEPRLLHTVRGVGYVLREPSGD 233


>gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 282

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 41  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 100

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 101 DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 160

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 161 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 220

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 221 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 260


>gi|326799051|ref|YP_004316870.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326549815|gb|ADZ78200.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD+ LA  I   L+ + F+V     G + + + +   FD IILD+ L D+ GF+
Sbjct: 3   KILLIEDDRRLASFIRKGLEEQLFSVSCVSSGYEALAVTQDIYFDLIILDIMLPDVSGFQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  A+R  KI++P+ ILS + + E+KV+GLQ+GADDY+ KPF+ EEL+ARI A +RR   
Sbjct: 63  ICTAIRERKITSPLIILSALDNPEEKVKGLQAGADDYLGKPFHFEELLARINAQLRRKSF 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 +    DL VN+  +  +  G  I L+ +EY+++  L   +   +++      ++
Sbjct: 123 EKGILDVQKYADLEVNIAEQGAKRAGKNILLSPREYKLLLFLLNNRERVVSRTQIAEAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           D        ++DV+I  LR K+         I TV GRGY+L++  +
Sbjct: 183 DIHFNTHTNVVDVYINYLRNKIDKGFAAP-LIHTVKGRGYMLKQKEE 228


>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 54/226 (23%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +DD  +   ++  L+SE + V+    G++        +    ++D+ + ++ G+
Sbjct: 2   IHILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R      PV +L+    + DK +G   G DDY++KPF  +EL+ RI+A++RR +
Sbjct: 62  QLCEEIRR-YYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   + +++  +  V+  G  + L  KE++++  L+   + T ++E  +  ++ 
Sbjct: 121 MVNADKIHLNETTIDRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E + + +DV I +LR++ ++ +G    I T+ G GY L  + +
Sbjct: 181 TDFEGDDRTVDVHIKRLRERFADRSGDFQ-IRTIRGVGYKLEASPQ 225


>gi|220906287|ref|YP_002481598.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219862898|gb|ACL43237.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 261

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 2/217 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IE +  L   +   L+   + VY+   G+ G E+      D +ILD  L D  G E  R
Sbjct: 9   IIEGNPHLRSLLGWHLQQAGYVVYLAANGQQGQEVFLTKRPDLVILDSDLPDGNGLEFCR 68

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            L   +    V +LS  ++  D V GL++GADDY++KPF  +E +AR+  + RRSR    
Sbjct: 69  WL-QRQQQVIVFMLSARNTETDIVNGLKAGADDYLTKPFGMQEFLARVECLGRRSRPAPP 127

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
           + +  GDL ++L  + V  Q   + LT +E+ ++ +L+    + L+++  L   +    +
Sbjct: 128 AYLKYGDLRIDLIQRRVHWQQELVDLTPQEFSLLYVLAQAGGSPLSRQELLQRAWPDDID 187

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +D  I  LRKK+ +       I+TV   GY L
Sbjct: 188 -NPRTVDTHILSLRKKVESDPQQPRLIQTVRNVGYRL 223


>gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
 gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886]
          Length = 218

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L  S+ + L  + F V    LG     L K   F A+ILDL L D  G 
Sbjct: 1   MRILLVEDDQMLGESMVVSLSRQGFTVDWVQLGNGVDTLVKTESFTAVILDLTLPDTDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R    + P+ IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  QVLKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRIS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I    +S++L    V V G  I LT  E++++  L       ++K+     L+ 
Sbjct: 121 GFSDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D      I+V I  LRKK+     G   I+ + G GY++ 
Sbjct: 181 WDDMASDNAIEVHIHNLRKKM-----GGELIKNIRGVGYIIE 217


>gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD  +A  I   L  +  ++      + G+       FD II D  L  + G 
Sbjct: 1   MKLLLVEDDAEIAEFIHKGLTEQGHSLCHEPDAKTGLVRAASESFDVIIFDRMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +R LR +++ +P+ IL+   SI D+V GL++GADDY+ KPF  EEL AR++A+ RR  
Sbjct: 61  DAIRVLRQSQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + +  G L+++  ++ V   G  + L  +EYQ++ELL + +   +T+ M L  ++
Sbjct: 121 VSQASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +P   ++   + +LR K+ + A     I+TV G GYVL
Sbjct: 181 GFQFDPNTSLVQTHVSRLRNKV-DKAFNTELIKTVRGAGYVL 221


>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
 gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
           TrichCH4B]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +       ++   F       G   I   +  + D I+LD+GL ++ G E
Sbjct: 4   RILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+  L+      D++ GL+ GADDY++KPF+  ELVARI+AI++RS  
Sbjct: 64  VCREIRKIS-EVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKRSVS 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     ++ G L ++ +          + LTG E++++  L +R +  LT+   ++ L
Sbjct: 123 APKPSDAAVIHGALHLDAERHQCTFNDTSVSLTGSEFRLLATLMIRPDHVLTRAQLVDAL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y        + ID  I  +R KLS A G    I TV G G  +
Sbjct: 183 YGYNIHVSDRTIDSHIRNIRAKLSQA-GCVEGIVTVHGVGLRM 224


>gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 265

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD  +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  R++A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS            ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232


>gi|54026938|ref|YP_121180.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
 gi|54018446|dbj|BAD59816.1| putative two-component system response regulator [Nocardia
           farcinica IFM 10152]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V +   G D +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLTFNGYTVDLAVDGVDALEKATAQRPDALVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRA 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     +   DLS++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PDPGDTSETLRFADLSLDPVTREVSRGDRAISLTRTEFSLLEMLMANPRRVLTRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V+I  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 228


>gi|124267828|ref|YP_001021832.1| two component transcriptional regulator [Methylibium petroleiphilum
           PM1]
 gi|124260603|gb|ABM95597.1| two component transcriptional regulator, winged helix family
           [Methylibium petroleiphilum PM1]
          Length = 236

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 4/233 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  L   +   L+   + V V    + G    +   FDA++LDL L D  G +
Sbjct: 4   RLLLIDDDARLTAMVGDYLRQAGYEVEVAPTLDSGRTRLERELFDALVLDLMLPDGDGLD 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR A  +   P+ +L+      D++ GL+ GADDY+ KPF   EL+AR++A++RR+
Sbjct: 64  LCRELRAAPRTRALPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALLRRA 123

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G    ++  G L V+   +   + G    LT  ++ ++++L+      L+++  ++ 
Sbjct: 124 APSGGDGDVLRFGRLEVDAGGRQARLDGKPCDLTSYQFDLLQVLANAPGRVLSRDQIMDA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           L     E   + IDV I ++R  + +       I TV G GYV  +    E  
Sbjct: 184 LKGHALEAFDRSIDVHISRIRAAIEDDPKTPRRILTVRGAGYVFAKKQDAEAA 236


>gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
 gi|300073503|gb|ADJ62902.1| phosphate regulon two-component response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 230

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ ++A  +   ++   F   +        +         ++LD  L D  G  
Sbjct: 7   HILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLPDSSGLV 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  LR  + +   PV +L+     EDKV+GL  GADDY++KPF+ +ELVAR++A++RR 
Sbjct: 67  LLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRK 126

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   D+S++++ + V V    + L   E++++  L        ++   L+ +
Sbjct: 127 APEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRAQLLDKV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L + A   +Y++TV G GY L
Sbjct: 187 WGDHTFIEERTVDVHIMRLRKSLGDLA---HYVQTVRGMGYKL 226


>gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC
           51172]
          Length = 226

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L  SI   L    +       G+D I++     +D IILD+ L    GF
Sbjct: 1   MKVLIVEDELDLLDSIAEGLTLMGYVTDKASNGDDAIDMAFVESYDLIILDVNLPGKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR++R       + +L+  S IED+V+GL  GA DY+ KPF  +EL AR+R+ +R  +
Sbjct: 61  EVLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSHLRGKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H  ++I    LS +   +     G  I LT KE  ++E L L     ++ E  + H++D
Sbjct: 121 IHQSTVINMSGLSFDTIKREASYGGKIIPLTVKETGILEYLFLNSERFISAEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     + V +  LRKKL +A G KN IE V G+GY + E 
Sbjct: 181 SNADGFSNTVRVHMSSLRKKLRSACG-KNLIENVIGKGYRIHET 223


>gi|119471563|ref|ZP_01613977.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
 gi|119445506|gb|EAW26792.1| putative transcriptional regulatory protein RstA [Alteromonadales
           bacterium TW-7]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + +  +V   G++ +   K    + ++LD+ L    G  V
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSQVKTLNPNIVLLDIMLPGQDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+      D+V GL+ GA DYI KP     L+ARI+A +R+S   
Sbjct: 67  CRELRSF-YNAPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQSSEP 125

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +S I  G L++N +++ V+  G  ++++  EY ++  L+      ++++     
Sbjct: 126 NKLEKVESTISVGSLNINTESRNVKFNGQDVNISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + +DV I  LRKK S+       I+T+WGRGY+L   A 
Sbjct: 186 TKGREYDGLDRSVDVLISALRKKFSDDPQNPEKIKTIWGRGYLLVSTAW 234


>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
 gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 235

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 20/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                      S      ++  G+L ++ +   V   G  + LT  E +++   S    T
Sbjct: 125 ASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGT 184

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  ++D     + +++DV + +LR K+         I+TV G GY L+
Sbjct: 185 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGYKLK 234


>gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121]
 gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 9/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D   +   +   L      V   D GE   +      FD I+LDL +    G 
Sbjct: 5   IRVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLMMPGEDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R  K + PV +L+ M    D++ G++ GADDYI+KPF+  EL+ARI+A+V+RS+
Sbjct: 65  TLCRNIRE-KSAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRSK 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                             +  +N   + +    + I L+  E++++ +        L+++
Sbjct: 124 SMPYQGEANQESKQFSFLNWQLNPIKRELVSDQNTIPLSSAEFRLLTVFLENPKHVLSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                          + ID  I +LRKK+         ++TVWG GY+  E+ 
Sbjct: 184 QLTEMTKGHTAGVFDRSIDNQISRLRKKIEIDPKTPEILKTVWGGGYIFTEDV 236


>gi|317126106|ref|YP_004100218.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
 gi|315590194|gb|ADU49491.1| two component transcriptional regulator, winged helix family
           [Intrasporangium calvum DSM 43043]
          Length = 244

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +A  +   +    +       G D +   + ++ D I+LDLGL    G E
Sbjct: 14  RVLVVDDERDIAEMVSDYIGRAGYVTLEAYTGPDAVSAAREFDPDVIMLDLGLPGFDGVE 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R+      + +L+  +    +V GL  GADDYI+KPF+  E++ARI+A++RR R 
Sbjct: 74  VCRQIRMFS-DCYILMLTARADEVARVVGLSVGADDYITKPFSTNEVLARIQAVLRRPRR 132

Query: 122 HA---------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      +   V GDL + +  + V V G  + LT  E+ +++ LS R     T+ 
Sbjct: 133 TEPHVRPSVVEEPARVFGDLRIEVPGREVTVAGTPVPLTRTEFDLLDALSGRPKLVFTRR 192

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ ++D     +  ++DV I  +R KL + A    YIET+   GY +
Sbjct: 193 ALIDEVWDTGWMGDEHVVDVHIGHIRGKLGDDANSAKYIETIRSVGYRM 241


>gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + + +  LR+KL +      +I T  G GY L   
Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229


>gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD ++A  IE  L  E + V V     +G    +    D  +LDL L D  G+
Sbjct: 1   MKILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTLPDGSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +       PV  L+      + V GL  GADDY++KPF   EL++RI++++RR  
Sbjct: 61  ELCK-VAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHN 119

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++    ++ +N     V      + LT  EY+++      +   L++   L  +
Sbjct: 120 KTDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLEGI 179

Query: 179 YDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   D      + V+I +LR KL +  G   +I T+ G GY 
Sbjct: 180 WDIAGDFVNDNTVTVYIKRLRDKLEDDPGNPTFITTIRGIGYK 222


>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/225 (39%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
          Length = 221

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G  + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIMRGQS-DVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220


>gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166]
          Length = 224

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+   A  ++  L    + V     G DG  L    ++D ++LD+ L  + G+
Sbjct: 1   MRILVVEDEIKAAEYLQQGLIECGYTVDCVSDGLDGFHLALQNDYDIVLLDVNLPTMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R  K  T V +L+    +E KVRGL+SGADDY+ KPF   EL+ARIR ++RR  
Sbjct: 61  EVLELIRRRK-QTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGE 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  S +   DL ++         G RI LT KE+ ++ LL  R    LT+      ++
Sbjct: 120 AVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFALLHLLMRRTGEVLTRTEITALVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  ++DV I +LR K+ +   G   I T+ G GYVL 
Sbjct: 180 DINFDCDTNVVDVAIRRLRMKV-DEPFGDRLIHTIRGVGYVLE 221


>gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 133/224 (59%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    + V +   G +G+ L   Y++DAIILD+ L    G+
Sbjct: 1   MRLLLVEDEEKTSSYIYRALSELGYMVDIAADGIEGLHLAVQYDYDAIILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR+ K  TPV +LS   S++++V+GL+ GADDY+SKPF+  ELVARI+A++RR  
Sbjct: 61  SVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRV 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   D+ ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  +++V + +LR K+ +       + TV G GYVL 
Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKV-DTPYTVKLLHTVRGMGYVLE 222


>gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
 gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC
           35098]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L   +E  L    +       GE+ ++L     +D IILD+ L    GF
Sbjct: 1   MKVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +L+  S I+D+VRGL  GA+DY++KPF+ +EL AR+R+++RR  
Sbjct: 61  EVLRDIRQFNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ I+  DLS +   + V   G  + LT KE  +IE L L +   +T E  + H++D
Sbjct: 121 IMEETEIMINDLSFDTVKREVVYDGRILALTAKETGIIEYLFLNRQRYVTVEEIMEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     + V +  LRKK+  A G KNYIE V G+GY + EN
Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKATG-KNYIENVIGKGYKIYEN 223


>gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +       +   G++ + L     +D +++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   ++ PV ILS + S E+K++GL SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++    ++ GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTEN-GLPDPIKTIRGFGYVIQE 229


>gi|332534928|ref|ZP_08410748.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035663|gb|EGI72153.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + +  +V   G++ +   K    + ++LD+ L    G  V
Sbjct: 7   ILLVEDDASLAQWVAEYLTEQGYTTHVCHRGDEVVSKVKTLNPNIVLLDIMLPGQDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    ++P+ +L+      D+V GL+ GA DYI KP     L+ARI+A +R++   
Sbjct: 67  CRELRSF-YNSPIIMLTARDEEMDEVIGLEVGASDYIMKPVRPRALLARIKAALRQNNEP 125

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +QS+I  G LS+N +++ V +    I+++  EY ++  L+      ++++     
Sbjct: 126 NKPQVSQSIIQVGALSINTESRNVTLNEQDINISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + +DV I  LRKK ++       I+T+WGRGY+L   A 
Sbjct: 186 TKGREYDGLDRSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLLVSTAW 234


>gi|257440237|ref|ZP_05615992.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
 gi|257197271|gb|EEU95555.1| DNA-binding response regulator RegX3 [Faecalibacterium prausnitzii
           A2-165]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 119/232 (51%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           ++L++ED+ ++   I L L+         D  E  + L +     DA ILD+ L  + GF
Sbjct: 3   KVLVVEDEASIREMIALNLRLAGMEAVEADSAEAALPLLEQKPGCDAAILDVMLPGMNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            +   +R       + ILS     +DK+RGL  GADDY++KPF+  EL+AR+ A+ RR  
Sbjct: 63  SLCETIRRTDQKIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRRVG 122

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  +  +A + +V+G+  ++ + + +   G +I LT  E+Q++EL        L +
Sbjct: 123 RSGGGSAADENAPTTLVSGEFVLDENRRVLLKAGRQIELTQVEFQIMELFFHNPGIALVR 182

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           E  L  ++      +VKI+DV I +LR K+ +      +I TVWG GY   E
Sbjct: 183 EKILKGVWGENYFGDVKIVDVNIRRLRMKVEDEPSHPTHIMTVWGYGYRWEE 234


>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
 gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Pediococcus pentosaceus ATCC 25745]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/227 (40%), Positives = 135/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K+LA  ++L L+ E + V V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   RILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   D+ +  + + V      I+LT +EY+++ LL    N   ++E  L
Sbjct: 122 ETQDSTFHQTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           N ++   D  E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 NKVWGVDDGVETNVVDVYIRYLRNKI-DVKGRPSYIQTVRGTGYVMR 227


>gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581]
 gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator
           [Halomonas elongata DSM 2581]
          Length = 220

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 124/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   I   L+ E + V   + G DGI   +  +F A+ILDLGL DI G 
Sbjct: 1   MRVLLVEDDPLLGDGIRTALQREGYAVDWLETGRDGIAAIRHDDFSAVILDLGLPDIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R A  S PV IL+   ++E ++ GL  GADDY+ KPF+ +EL+AR+R I+RR+ 
Sbjct: 61  EVLDKIRHAG-SLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLRVIMRRAE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  L+  G+L ++     V  QG+ I LT +EY ++  L+      +T+    + LY 
Sbjct: 120 GRSSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPHLEDLLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LRKKL         I TV G GY L
Sbjct: 180 WEDEVASNAVEVHVHHLRKKLDRH-----LIATVRGVGYRL 215


>gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
 gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491]
 gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT
           98-5491]
          Length = 222

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           +IL++EDD  +   +   LK        TD   + +E+ K    FD  +LD+ L ++ G 
Sbjct: 3   QILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIMLPEMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R      P+ + S    I  K+ G + GADDY++K +   ELVARI A+++R  
Sbjct: 63  ELCKKIRQIS-DLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +I  GDL V+ +   V ++G+ I LT  E++++ LL   K    ++E     +  
Sbjct: 122 --ANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  ++ ID  I  LR KL + A    YI++VWG GY  
Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220


>gi|329923173|ref|ZP_08278661.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5]
 gi|328941559|gb|EGG37847.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 111/224 (49%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED   +   ++  L+ E F V     G++ + + +    D ++LD  L +  G +
Sbjct: 4   KLLIVEDAPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       + +++  S   DK+ GL+ GADDY++KPF+  EL +RIRA++RR RG
Sbjct: 64  VCREIRQTS-HCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                I     +L ++     V   G  + LT  E++++  L+ R     ++   L    
Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +       + +D  I  LR+KL +      YI+TV+G GY   E
Sbjct: 183 EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRFGE 226


>gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
 gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family
           [Sphingobacterium sp. 21]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  LK E ++V+    G++ +   +    D IILD+ +  + G E
Sbjct: 7   KILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R      +T +  L+  S    ++ G   GADDYI+KP     L++RI AI+RR+
Sbjct: 67  ACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRRN 126

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  ++ +   DL ++ +   V     +I L  KE++++ LL+ +     T+E  L 
Sbjct: 127 SKGEETLENKVEIADLVIDRETFLVYKNDEKIVLAKKEFELLYLLASKPGKVYTRETILK 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++       + IDV I KLR+K+ +      Y+ TV G GY  
Sbjct: 187 SIWEDSVVVTNRTIDVHIRKLREKIGDD-----YVSTVKGVGYKF 226


>gi|221069936|ref|ZP_03546041.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
 gi|220714959|gb|EED70327.1| two component transcriptional regulator, winged helix family
           [Comamonas testosteroni KF-1]
          Length = 257

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 15/229 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +A  +   L   ++ V V     +         FDA++LDLGL+D  G 
Sbjct: 27  MRILVVEDNEGIAAGLRANLMQRSYAVDVCASVAEAWHALSTERFDAVLLDLGLSDGDGS 86

Query: 61  EVLRALRVA----------KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA 110
           EV+R LR+             +TPV IL+    ++D+V GL  GADDY+ KPF+ +EL A
Sbjct: 87  EVVRRLRLQTGRPGVPQLPDPATPVLILTARDQVQDRVAGLNLGADDYLVKPFDMDELEA 146

Query: 111 RIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R+RA++RR+ G A  +I   DL V+  A+T+   G ++ ++ +E+ ++  L L +   L+
Sbjct: 147 RLRAMMRRAAGQASPVIRHADLEVDPAARTIRQAGQKVEVSPREFAVLWALLLARGRVLS 206

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
           +     HLY   D  E   ++V++  LRKKL     G+  I T+ G GY
Sbjct: 207 RPQIEEHLYSWGDTVESNAVEVYVHHLRKKL-----GQKIIVTMRGVGY 250


>gi|269957382|ref|YP_003327171.1| winged helix family two component transcriptional regulator
           [Xylanimonas cellulosilytica DSM 15894]
 gi|269306063|gb|ACZ31613.1| two component transcriptional regulator, winged helix family
           [Xylanimonas cellulosilytica DSM 15894]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL EDD A+A  +   L  E ++V V   G+  I+       D ++LDLGL D+ G +
Sbjct: 3   HVLLAEDDPAIAEPLARALTREGYDVIVQGTGQGAID--NAGSADVVVLDLGLPDMDGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR + +S P+ +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR+ G
Sbjct: 61  VARELRGSGLSVPILVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRRTHG 120

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   D+ V++ A         +HLT KE+ ++++L     + + ++  +  ++
Sbjct: 121 ETTEEEELRAQDVRVDVSAHRAFQGDRELHLTTKEFDLLKVLVANAGSVVVRDTLMRDVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   K +D+ +  LR+KL + A    Y+ TV G G+   
Sbjct: 181 GSDPVGSTKTLDMHVSWLRRKLGDDANAPRYVSTVRGLGFRFE 223


>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
 gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
           1131]
          Length = 232

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  DKV GL+ GADDY+ KPFN  ELVARIRA++RRS  
Sbjct: 62  TLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSNW 120

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q+         +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQTQGDNSNTPVLQVDKLQLNPGRQEASFDDEILDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLMV 229


>gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum
           Rt17-B1]
 gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family
           [Fervidobacterium nodosum Rt17-B1]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 130/231 (56%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A +++ +LKS+ F   V +   D     +   ++ I+LDL L D    
Sbjct: 1   MRVLIVEDERIIAENLQKLLKSDGFESDVANGINDMYRKLEKNTYEVILLDLMLPDGNAI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             ++ L+       + ++S  S+  DK+ G++ GADDY+ KPFN  E+VAR++A +RR++
Sbjct: 61  NEIQTLKNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +I  G L +      V   G +I LT KE+++++LL+ R +   ++E  L  ++ 
Sbjct: 121 GIKE-VIRYGKLEIYPSDYVVLYDGQKIDLTAKEFEILKLLAQRPDRVYSREEILETIWT 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +   +++DV I  LRKKL     GK++I TV G GY   +    ++ E
Sbjct: 180 DEYDVFDRVVDVHINSLRKKL-----GKDWIITVRGVGYKFSKKGDAQSSE 225


>gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 224

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A  ++  L    + V     G D + L +   +  +ILD+ L  + G+
Sbjct: 1   MRVLVVEDEAKTAEYLQQGLTESGYIVDRASNGVDALHLFQHNTYGLVILDVNLPKVDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R       + +L+G   + DK++GL  GADDY+ KPF   EL+ARIR++ RR  
Sbjct: 61  DVLDTIRKTS-RVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGD 119

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   DL ++           R+ LT KE+ ++ LL       LT+   ++ ++
Sbjct: 120 KVVDHPTLRVADLELDPGRHRAFRGDLRVELTTKEFALLRLLMSHPGEALTRSQIISLVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   + +  +IDV I +LR K+ +       I T+ G GYV+ E +
Sbjct: 180 DMNFDCDTNVIDVAIRRLRAKI-DDPFENKLIHTLRGVGYVIEERS 224


>gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+   I   L+ E  +V     GE  + L      D ++LD+GL DI GFE
Sbjct: 3   RLLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGLPDIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELV---ARIRAIVRR 118
           VLR LR   + TPV +L+      D+V GL+ GADDY+ KPF+  ELV     +      
Sbjct: 63  VLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRATL 122

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  +    L ++   +    Q H + L  +E+ ++  L+       +++  L  +
Sbjct: 123 RTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + + +DV + +LR KL+      + I+T WG GY   E
Sbjct: 183 WGQDGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRFAE 227


>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
 gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
 gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
 gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
 gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
          Length = 239

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++++A  ++  L+ E++ V   + G+  ++L    +   I+LD  L    G  
Sbjct: 7   KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +S  D    L  G DDY++KPF  EEL+ARIR ++RR   
Sbjct: 67  VLRRIRKQS-DVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q        +  G L ++L          +I+LT KE+ +I  L        +++  L
Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++      +   +DV+I  +R K+ N    K  I+T+ G GY LR+
Sbjct: 186 DTVWGYDFVGQTNTVDVYIRTIRNKIGNPY--KKIIKTMRGLGYCLRK 231


>gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
 gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991]
          Length = 232

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 128/226 (56%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED++ +   I   LK  N+ +  T  G + IEL    +FD +I+D  L  + G E
Sbjct: 10  KILLIEDEENIRKIIAYDLKKANYEIVETGDGREAIELAGSNDFDVLIIDWMLPHVSGIE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  K  + + +L+      D +   + G DDYI+KPF+  EL+AR+ A ++R +G
Sbjct: 70  IVERLRERKNDSIMIMLTARDDETDILHAFEKGVDDYITKPFSPRELLARVNAHLKRRKG 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V GD+ ++L  +++ ++   + LT KE+ ++E     K   L+++  LN ++  
Sbjct: 130 REEPRLVFGDICMDLKRRSILLKEQELELTKKEFDLLEYFISNKEVVLSRDNILNEIWGF 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + + +I+DV + KLR KL+N+      I+++ G GYV+ E  ++
Sbjct: 190 DYDGDTRIVDVHVFKLRSKLANSNIQ---IKSMRGIGYVIEEKHEE 232


>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
 gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
 gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 112/228 (49%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +I ++L+ E + V     G   +EL    +   +I+D+ +  + G   
Sbjct: 5   ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVMMPKLDGLSA 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R  K + P+ +LS  S   DKV GL  GADDY++KP+N +EL AR+++ +RR    
Sbjct: 65  VLKIRERK-NIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRRYTSL 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +      I  G L  + + + + V    + LT  E +++ELL          E   
Sbjct: 124 GDIHKADDDGCITNGRLEFHTNERVLYVDKEPVRLTATETKIMELLMKYPGRVFPAEEIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +++ +       + V I ++R+K+        Y++ VWG GY + +
Sbjct: 184 ERVWNEQGYACENTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231


>gi|187933012|ref|YP_001886059.1| ResD family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721165|gb|ACD22386.1| transcriptional regulatory protein ResD [Clostridium botulinum B
           str. Eklund 17B]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + ILL++D+K +   ++  L  E F     + G   I       +D +ILD  L DI G 
Sbjct: 2   INILLVDDEKKICEFVKAYLDKEGFVTDEANDGCTAIRYFDLNRYDLVILDRMLPDISGE 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   +R  K   P+ +L+     ED++ G + G DDY+ KPFN +EL+ R+++I++RS 
Sbjct: 62  EVCNHIR-NKSDVPIIMLTAKIDEEDRLGGFKLGCDDYLCKPFNIKELIFRVKSILKRSG 120

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +     + +N  +  V V+G +I LT  EY+++ L++       ++E  L  +
Sbjct: 121 KIDFRDIMKFKQGIEINTSSHEVTVRGKKILLTNTEYKILLLMASNPQKIYSREELLESV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   E   ++ID  I  LR+K+   +     I+T++G GY   
Sbjct: 181 IEEYYEKMDRVIDSHIKNLRQKIEVNSRDCKIIKTIYGVGYRFE 224


>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
           HI4320]
 gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
 gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
 gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
           29906]
          Length = 232

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDA-SIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQ-NFQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G+   ++    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQKQTDGNTSPILQVDKLQLNPGRQEASFDNEPLELTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERTDGQPWFKTLRGRGYLMV 229


>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
 gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ +   I L L S  + V   D   D +EL K       I DL L  + G +
Sbjct: 4   RIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS      DKV GL SG+DDY++KPF   EL AR+R+++RR   
Sbjct: 64  AIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRH-- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I T  L V+   + +++ G ++ LT KEYQ++  L   K+  + +E  LN ++  
Sbjct: 122 VTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               E + +DV I  LR KL++   G  YI+T+   GY   E   D
Sbjct: 182 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEGDD 225


>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +   ++    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + ++  I  LR KL   A    YI TV   GY   
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFE 226


>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 225

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  + + I+     E   V     G + I++C+  EFD I++D+ + ++ GF 
Sbjct: 3   KILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++    + PV +LS      DK+ G + G DDY+ KPF+ +EL+ RI  IV+RSRG
Sbjct: 63  ACKEIKKFSKA-PVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKRSRG 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            + +     +     L+V+   + V +   +I ++ KEY +   L   +   LT+E  + 
Sbjct: 122 TSDTENKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYLVKNRGIALTRERLIT 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + +D  I  LRK L + +     I T+ G GY   
Sbjct: 182 DVWGYDFFGDDRTLDTHIKLLRKSLGDYSKN---IVTLRGVGYRFE 224


>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
 gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A  I+  ++   + V     G++G E  K   F  +++D+ + ++ G  
Sbjct: 4   RILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R+     P+ I+S  +    KV+GL  GADDYI+KPF+  EL AR+ + +RR R 
Sbjct: 64  LCKNIRLTS-DVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRRYRR 122

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   L     L +  + K VEV G  IHLT KE++++ L++     T TK    
Sbjct: 123 YNGIENNEHILKFKRGLIIYQEGKYVEVDGRNIHLTSKEFELLMLMAENPKKTFTKSELY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L+  +D      + V I +LR+KL       N+IETVWG GY  
Sbjct: 183 EILWGEKDVHGNNTVTVHIKELREKLKENIKNPNFIETVWGVGYKF 228


>gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621]
          Length = 214

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
 gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
          Length = 238

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+  +   +E+ L+ ENF ++     G++ ++L K   F+ I+LD+ L DI GF
Sbjct: 5   KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPDISGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+   +R     TP+  +S  ++  DK+ GL  G DDYI+KPFN  E++ARI+AI+RR  
Sbjct: 65  ELCTEIRR-NTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              R   + +   G  +   ++  + VQ   +  T KE +++       N   T      
Sbjct: 124 MYERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E K + + I KLRKKL +       I  + G GY  
Sbjct: 184 RVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 228


>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 243

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+AL   +   L+   + V V + GE  +        D ++LD  L  + G +V
Sbjct: 20  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   A  + P+ +L+  +   D +RGL  GADDY++KP + E L ARIRA++RR+ 
Sbjct: 80  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA- 138

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ ++   D++++  A   E  G ++ L   EY+++E          ++E  L  +++
Sbjct: 139 PPAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVWE 198

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E + +DV I +LR  + N  G  + + TV   GY L + 
Sbjct: 199 RGVHVEPRTVDVHIRRLR-LILNGPGEADIVRTVRAAGYALDDP 241


>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 244

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD A+   + + L+ + F V     G   + L    + D  +LD  L  + G E+
Sbjct: 18  VLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLL--PQADVAVLDWMLPGMTGLEL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R         P+ +L+     EDK+ GL+ GADDY++KPF+  E+VAR++ ++RR    
Sbjct: 76  ARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRM--G 133

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + +I  G+L +++ A+   ++G  + L+  E+ ++  L+       T+E  L  ++   
Sbjct: 134 VREVIEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGVD 193

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +++DV I  LR+KL + A    YIETV G GY  REN +
Sbjct: 194 YPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFRENGQ 237


>gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +    ++  L    + V +   G DG+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVVEDDGSTGDYLKKGLTEAGYAVDLARNGTDGLFNALEHSYDAIILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++ GL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QIIEMLR-KKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV + +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKI-DKPFDIKLIHTVRGIGYV 218


>gi|197302733|ref|ZP_03167787.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
 gi|197298315|gb|EDY32861.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC
           29176]
          Length = 244

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I++ L  E +++     G + + + +  + + +ILD+ +  + G   
Sbjct: 17  ILVCDDDKEIVEAIDIYLSQEGYHILKAYDGVEALNILEKEKVNLLILDVMMPKLDGIRA 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    S P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 77  TLKIRETN-SVPIIILSAKSEDSDKILGLNIGADDYVTKPFNPLELVARVKSQLRRYNEL 135

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+   + +   G L +N D K V V G  + LT  EY ++ LL   +    +     
Sbjct: 136 GGTSQEQKEKVYEVGGLRINDDLKEVTVDGELVKLTPIEYNILLLLLKNQGRVFSINQIY 195

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++         + V I  +R+K+        Y++ VWG GY +
Sbjct: 196 ESIWNEEAIGADNTVAVHIRHIREKIEINPKDPRYLKVVWGVGYKI 241


>gi|72162340|ref|YP_289997.1| response regulator receiver [Thermobifida fusca YX]
 gi|71916072|gb|AAZ55974.1| response regulator receiver [Thermobifida fusca YX]
          Length = 217

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I + L+ E+  V V   G+  +E     ++D IILD  L    G 
Sbjct: 1   MRVLVVEDEQVLADAIAVGLRRESMAVDVAYDGDSALERANVNDYDVIILDRDLPGTHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV ++L  A+    + +L+    ++DKV GL  GADDY++KPF   ELVAR+RA+ RRS 
Sbjct: 61  EVCKSLATARYPGRILMLTAAGELDDKVAGLSLGADDYMAKPFAFAELVARVRALARRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++    TVE  G  + LT KE+ ++E+L       ++ E  L   +D
Sbjct: 121 PPLPPVLRRQGITLDPANHTVERDGRPVSLTPKEFAVLEVLMRANGAVVSAEKLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL +       I TV G GY +
Sbjct: 181 ENADPFTNVVRVTVMTLRKKLGD----PPVIHTVQGAGYRI 217


>gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR
 gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC
           12228]
 gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus
           epidermidis SK135]
 gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144]
 gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028]
 gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045]
          Length = 219

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 86/220 (39%), Positives = 129/220 (58%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  IEL L  EN+ V + + G+ G++      +D  ILDL L +I G E+
Sbjct: 4   ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLMLPNINGLEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    +  + I    S   DKV GL  GADDYI KPF+ EEL+ARIRA++RR    
Sbjct: 64  CRQIRQKTTTPIIIIT-AKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRRQPD- 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            + ++    + ++ DA  V V GH++ LT  EY ++ +L+  +N  + +E  L+H++   
Sbjct: 122 -KDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E E  ++DV+I  LR KL      K+ IETV G GYV+R
Sbjct: 181 SEVETNVVDVYIRYLRNKLKPFNKEKS-IETVRGVGYVIR 219


>gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047]
          Length = 218

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   L  +I+  + +E   V   +             +D ++LDL L D  G 
Sbjct: 1   MRILLVEDTVGLGEAIQDQITAEGHAVDWVETISHAETSLHATHYDLVLLDLMLPDGSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R A  + PV IL+    I D+++GL +GADDY+ KPF+  EL ARI A+ RR  
Sbjct: 61  ELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSARIAAVSRRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  G L ++L    +   G  I+LT +E+ + E    R  T ++K    +HLY 
Sbjct: 121 GNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISKSQLEDHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V+I +LRKKL         +ETV G GY +
Sbjct: 181 FGTEIESNTIEVYISRLRKKLGRD-----LLETVRGLGYRM 216


>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 224

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K L++++  +LK  N++V     G D +E      +D IILD+ +  + G 
Sbjct: 1   MRILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNYDVIILDIMMPKMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  LR   I TP+ +L+  + IED++ GL +GADDY+SKPF   EL+AR+RA+ RR  
Sbjct: 61  ETLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+  G++S+N +   +  +   + L  KE+QM+E+L       ++ E F+  ++ 
Sbjct: 121 EFTPNLVKVGNISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E+ ++ V+I  LRKKL++       I+   G GY L E 
Sbjct: 181 YDAEAEINVVWVYISYLRKKLASLNANIK-IKAGRGIGYTLEET 223


>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
 gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED+K +   ++L L+ E ++V     GE+GIE  K   +D I+LDL +    G
Sbjct: 1   MKNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EV + +R    + P+ +L+      +KV  L  GADDY++KPF  EEL ARIR  +R  
Sbjct: 61  EEVCKIIRKTS-NIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNK 119

Query: 120 RGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +  D L ++L   ++      I LT  EY +   L L K   +++E  LN +
Sbjct: 120 SNFTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +      E KI+DV+I  LRKK+        +I TV G GYVL++  +
Sbjct: 180 WGYDYMGEEKIVDVYINALRKKI--DYDENKFIHTVRGFGYVLKKEDE 225


>gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 226

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  +A  IE  ++ + F   +   G  G +L   ++F  II D+ L  I G 
Sbjct: 1   MDILIIEDDLRVAQLIERAVREQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R  K   P+ +L+ + + ++KV G  +GADDY+ KPF   EL+ARIRA+++R  
Sbjct: 61  DLCKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A     ++   DL +NL+ K V+  G  I LT KE+ +++         L++     +
Sbjct: 121 QSASVASFVLKYHDLEMNLNTKMVKRAGIEIELTPKEFNLLQYFLSHPEKVLSRSDIAEN 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++   +     IDV+I  LRKK+         I T  G G++LR
Sbjct: 181 VWETHFDTGTNFIDVYINYLRKKIDKDF-NHKLIHTKPGMGFILR 224


>gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium etli CIAT 894]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+ ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR++A++RR+
Sbjct: 64  LCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     +++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 RPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMQDVIRTVRGAGYSME 226


>gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 1   MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 61  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V  +   + ++ +E+ +++ L       +++E     L
Sbjct: 121 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 223


>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IEDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFE
Sbjct: 5   HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + PV +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS  
Sbjct: 65  VAKMIRSQS-NVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +  V  +L V++DA  V V    I LT KE+++++LL   +   L +E  +  ++ 
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E +IID  +  +RKKL        YI+T+ G GY + E
Sbjct: 184 YDYIGESRIIDTHMKNIRKKLDI-----PYIKTIKGIGYKIDE 221


>gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|299531523|ref|ZP_07044929.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
 gi|298720486|gb|EFI61437.1| two component transcriptional regulator, winged [Comamonas
           testosteroni S44]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+EDD A+A +I   L+ E   V  + L  D  +      FD +++D+GL D  G 
Sbjct: 1   MQVLLLEDDPAIARTICYALEREGIAVTHSLLIADARQQWSRTAFDVLLMDVGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R LR A    PV +LS      DKV GL+ GADDY++KPF+  EL+AR RA++RRSR
Sbjct: 61  DWCRELRSAGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSR 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                    +   L ++   +   +    + LT +EYQ+++ L       L+++  L  +
Sbjct: 121 QFQPTAPAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    E   + +D  I  LR KL      +  I T  G GY L +  
Sbjct: 181 WGLDSESTDRTVDTHIKTLRAKLRERLPDQELIVTHRGLGYSLNQPG 227


>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 249

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEF-DAIILDLGLTDIPGF 60
           RIL+ +DD+ +   ++  L+ E F       G+  +E     +  D  ILD+ + ++ G 
Sbjct: 26  RILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEMDGL 85

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E LR +R  +   PV ILS      DKV GL+ GADDY+SKPF+ +EL+AR+ A +RR  
Sbjct: 86  ETLRHIRE-RTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRREN 144

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H QS  V   G L ++  + TVEV G  + L+GKE+Q++  L +    T+++E     +
Sbjct: 145 KHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++  + V I  LR KL         I TVWG GY L  +
Sbjct: 205 WKDAFGGDLSTVTVHIKNLRDKLG---AEGRRIRTVWGIGYRLERD 247


>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 217

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +++ I+L L   N+       GE+ ++  +   FD I+LD+ L  I GF
Sbjct: 2   IKILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVMLPKIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  ++      PV  L+  +S+ DKV GL++GADDYI+KPF   EL+ARI  ++R   
Sbjct: 62  TLLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  ++I   D+ +NL+  T    G  + LT KE++++ +L   KN  LT+E  +  ++ 
Sbjct: 120 KNT-NVINFEDVEINLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E + ID  I KLRKKL      K+ I+TV+  GY L 
Sbjct: 179 YDYVGETRTIDNHIQKLRKKLQ----WKDKIKTVFKLGYRLE 216


>gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 223

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 122/229 (53%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++EDDK L   +   L    F V     GE+G  L     +D +ILD+GL  I G 
Sbjct: 1   MRALVVEDDKDLNRQLAAALADAGFAVDTAADGEEGYFLGDTEPYDVVILDIGLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R +    PV +L+      DKV G+ +GADDY++KPF+ EEL+AR+RA +RR+ 
Sbjct: 61  SILEQWRRSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH +S I  G + ++  +  V   G  + LT  E++++  L       +++   + HLYD
Sbjct: 121 GHVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + +   I+VFI +LRKK+         I+TV G GY + +   DE 
Sbjct: 181 QDFDRDSNTIEVFIGRLRKKIPGD-----VIQTVRGLGYRMSQ-GPDEA 223


>gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 227

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   I   LKS  ++      G + ++  K +  D I+LD+ + +  G +
Sbjct: 9   KILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGID 68

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R       T V  L+ ++  + ++ GL  GADDYI+KP   + LV+RI A+ RR 
Sbjct: 69  TCREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRL 128

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  GDL ++ +  TV  +G  I L  KE+++++LL+ +      +   LN ++
Sbjct: 129 HKPEDTQVQLGDLIIDREKFTVTYKGQEIILAKKEFELLQLLASKPGRVFLRNEILNQVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   + IDV I K+R+K+         I TV G GY   
Sbjct: 189 GTEVIVGDRTIDVHIRKIRQKIGID-----LITTVKGVGYKFE 226


>gi|164686903|ref|ZP_02210931.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
 gi|164604293|gb|EDQ97758.1| hypothetical protein CLOBAR_00499 [Clostridium bartlettii DSM
           16795]
          Length = 224

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 3/225 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD+ L   +   LK + +N       E+G +L +  E D ++LD+GL D  G
Sbjct: 1   MKNILIIEDDRMLNKGVAFALKKDGYNTMCAYTKEEGKKLIQQNEVDFLLLDIGLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++   ++  KI  P+   +   + ED ++G +SG DDYISKPF+ E L  +I AI++RS
Sbjct: 61  LDLCNEIKE-KIDFPIVFFTANDTEEDMIKGFESGCDDYISKPFSIEVLKFKINAILKRS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H++ L V  DL ++ DAK V  +   I L+  EY+++E+L   K   +TKE+ L+ L+
Sbjct: 120 DIHSKKLFVYKDLKIDFDAKRVYKRNEEIRLSATEYKLLEILCKNKGRAMTKEILLDKLW 179

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +  +   + V I ++RKK+ + +    YI T++G GY   E
Sbjct: 180 DYNGNYVDDNTLSVNIRRIRKKIEDDSKNPEYIITLFGIGYTFGE 224


>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 234

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 14/231 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +   L+ E + V     G   +E       D ++LD+ L ++ G EV
Sbjct: 5   ILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR     TP+  LS  +   D++ GL+ G DDY++KPF+  ELVAR+RA++RR    
Sbjct: 65  CRRLRA-GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEAP 123

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                  S G   +++  G + V+ +       G  + LT  E  ++  L  R    L++
Sbjct: 124 PPAPAPASTGARAAVLRHGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLSR 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   Y   +    + ID  + ++R K     G    I TV G GY L+
Sbjct: 184 GQLMQRAYRYDNLITERTIDTHVRRIRAKFRVVGGDP--IATVHGVGYKLQ 232


>gi|187926366|ref|YP_001892711.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665853|ref|YP_002984212.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728120|gb|ACD29284.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867880|gb|ACS65540.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 243

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR   
Sbjct: 65  ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRLT 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +     G   +N   +T+      + ++  E+ +++LL       LT+E  +
Sbjct: 125 VPASAPEDRDSFSFGPFKLNFRMRTLFRGDSALSISDTEFALLKLLIGHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +Y        + IDV I +LR+ L   A    YI+TV GRGY    + ++E  E
Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDEREEVNE 240


>gi|322437589|ref|YP_004219679.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321165482|gb|ADW71185.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 229

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+L++ED+  LA ++   L+    F V   + GE  I L     +D IILDL L  + G
Sbjct: 1   MRVLIVEDELRLAENVAEALRQGPGFAVDHAEDGEAAIHLAANACYDLIILDLNLPKMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL  LR     TP  IL+  +  E  V  L +GADDY++KPF+  EL+AR +A++RRS
Sbjct: 61  PAVLHRLRATGDKTPTLILTARAERESIVALLNAGADDYLTKPFDLGELIARAKALIRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A   I  G+L V+   +TV   G  I L+  EY+++E L  R    ++K   L H+Y
Sbjct: 121 TGVAAPSIRLGELEVDTLQQTVSRAGTLIPLSPMEYRILEYLIHRPRIIVSKRQLLEHMY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   E    +I+  +  LR+KL  +      IET+ GRGY L
Sbjct: 181 DFNWEHHSNVIEAHLSNLRRKLDPSGSEP-VIETLRGRGYRL 221


>gi|295098193|emb|CBK87283.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 240

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  ++     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQVLDAQSPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEADA 236


>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 250

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 114/222 (51%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  L   +        F V     G  G+       FD IILD+ L  + GFEV
Sbjct: 27  ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           LR LR    +TPV +L+   S  D+V GL SGADDY+ KPF  +EL+ARIRA++RR   +
Sbjct: 87  LRQLRKRS-ATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHT 145

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++ +  L ++  A+ V   G  I +T  E+ ++E+L      T+T++     LY
Sbjct: 146 DAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVLY 205

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P  + +DV I  LRKKL      ++ I T+ G GY  
Sbjct: 206 QRPATPYERSLDVHISHLRKKLERD--DRSVIRTIRGVGYQF 245


>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
 gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Paenibacillus polymyxa E681]
          Length = 228

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+ ++ +++   LK E F V     GED +E  + +  D +ILD+ +  + G+E
Sbjct: 4   KILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L  ++    + +L+  + I DKV GL+ GADD++SKPF+  EL+ARI+A+VRR   
Sbjct: 64  VCRRL-ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + +V G L V   ++T E+    + LT KE+ ++ LL        T++  L 
Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++        + +D+ I +LRKKL      +  ++TV+G GY 
Sbjct: 183 QVWSFDYVGGTRTVDIHIQRLRKKLEP---HQAILQTVYGIGYK 223


>gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
 gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptostreptococcus anaerobius 653-L]
          Length = 231

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 123/232 (53%), Gaps = 14/232 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D++ +   ++  L  E + V  T    DG+++ K  + D ++LD  L  + G E
Sbjct: 3   RILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSGIE 62

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  +R         V +L+  +  EDK+ GL  GADDY++KPF+ +EL AR++ I++R 
Sbjct: 63  LLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILKRY 122

Query: 120 RGH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         + +  GDL + LD   V ++   I LT KEY +++LL   K   ++
Sbjct: 123 NKQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRVIS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +E  L  ++      E + +DV I  LRKKL      +N+I+T+ G GY ++
Sbjct: 183 REYILEKIWGYDYFGETRTVDVHIRYLRKKLGED---ENFIDTIRGLGYKIK 231


>gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Edwardsiella tarda EIB202]
 gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda
           FL6-60]
 gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda]
 gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  253 bits (647), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 126/224 (56%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G+ G+   +   +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY 
Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+     ++V I  LR+KL     G ++I TV G GY L ++
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTLGDS 219


>gi|306834322|ref|ZP_07467439.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
 gi|304423495|gb|EFM26644.1| phosphate regulon response regulator [Streptococcus bovis ATCC
           700338]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 113/223 (50%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++  F            +  +  +   I+LD+ L    G  +
Sbjct: 2   IYCVEDDDDIRELMLYTLRTAGFEAQGFPDSVLFWKAMEEEQPKLILLDIMLPVDDGLTI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L++LR   +    PV + +   +  DKV+GL  GADDY+ KPF   E+++RI+A++RR+ 
Sbjct: 62  LKSLRSNGMTKDIPVIMTTAKGTEFDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRTS 121

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q + +   +LS++    TV   G +I LT KE+ ++ LL L      T++  L+ ++
Sbjct: 122 NQEQETHLTIKNLSLDAKNYTVRNNGQKIELTLKEFDLLSLLMLNPGRVFTRQELLDKVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E + +DV I  LR KL +A+   + I+TV G GY L 
Sbjct: 182 GEHFIGETRTVDVHIGTLRMKLGDAS---HLIKTVRGVGYRLE 221


>gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 267

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKNGVEADTALSMQSFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   +    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|227328970|ref|ZP_03832994.1| DNA-binding heavy metal response regulator [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 134/224 (59%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++  +  I   L    + V V   G DG+ L   Y++DA+ILD+ L    G+
Sbjct: 1   MRLLLVEDEEKTSSYIYRALSELGYTVDVAADGIDGLHLAVQYDYDAVILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL  LR+ K  TPV +LS   S++++V+GL+ GADDY+SKPF+  ELVARI+A++RR  
Sbjct: 61  AVLEGLRLHK-QTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRRRL 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S G   + +   D+ ++L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 SDGVDVTQLHIDDMHLDLLARRVTRAGQRLDLTAKEFALLSLLARHQGEILSKMMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  +++V + +LR K+ +A      + TV G GYVL 
Sbjct: 180 WDMNFDSDANVVEVAVKRLRAKV-DAPYTVKLLHTVRGMGYVLE 222


>gi|220919853|ref|YP_002495156.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
 gi|219952273|gb|ACL62664.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 231

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ LA  +   L +E + V       +G +  +   FDA+ILD+ L D  GFE
Sbjct: 4   RLLIIDDDRRLAAMVSEYLSAEGYAVASRFTAREGHDALRRERFDAVILDVMLPDCDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIRA++RR R 
Sbjct: 64  LCRQIRT-HSGVPILMLTAKGDDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRRQRA 122

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +   G L ++  ++ V + G    LT  ++ ++   +      L++E  ++ +  
Sbjct: 123 PQEAALLDFGRLQIDPSSRVVRLDGVERRLTSHQFDLLLAFATNAGRVLSRERLMDLVKG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              +   + IDV + +LR  + +       + T+ G GYV    A+ +  E
Sbjct: 183 EELDALDRSIDVHVSRLRAVIEDDPRHPRRLITIRGAGYVF---ARQQDAE 230


>gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603]
 gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603]
          Length = 219

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L + I   L    +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H+Y 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+       + I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APDVIKTVRGLGYQL 216


>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 111/228 (48%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D++ +   + L L+   +NV     G+  +++      D  +LD+ + ++ G++V
Sbjct: 5   ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      PV ++S      +K+ GL  GADDY+ KPFN  E VAR+   +RR +G 
Sbjct: 65  LKRLRETS-DVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKGM 123

Query: 123 AQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A +        +   +L ++ +A  +   G  + LT  EY+++ +         TK+   
Sbjct: 124 AAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQIY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +D         + V + +LR KL +   G+  I+T+ G GY L +
Sbjct: 184 ECGWDEDYVAAENSVMVCMSRLRSKLGDD--GQEAIKTIRGLGYRLEK 229


>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
 gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
           [Thermosinus carboxydivorans Nor1]
          Length = 224

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 136/224 (60%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD AL  ++  +L  EN+ V     G++G+ L +    D ++LD+ L +I G 
Sbjct: 1   MRILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ +R    + P+ +L+   S+ D+V GL++GADDY++KPF   EL+ARI+A++RRS 
Sbjct: 61  EIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRRSG 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   I  G + ++   +   V+G  + LT KEY+++E L L K   LT+E   + ++
Sbjct: 121 NLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIFDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E  + ++D++I  LRKKL  +    N I+T+ G G++L+E
Sbjct: 181 GFASETTISVVDLYIHYLRKKL-ASFDRDNLIQTIRGAGFMLKE 223


>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 116/226 (51%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ +   +   L ++ + + V + GE   E+ K +  D +I D+ + ++ G  
Sbjct: 4   RILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDGLA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + LR      P+ +LS       KV+ L  GADDYI+KPFN  EL+ARIRA +RR+  
Sbjct: 64  LCKELRARS-QVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAPV 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GD  ++  A  V+V+G  + LT KE+ ++  L+      +     L+ ++ 
Sbjct: 123 AEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                + + + VF+ +LRKK+      K YI T    GY      +
Sbjct: 183 ADHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGYRFIPEGE 228


>gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103]
 gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103]
 gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 116/227 (51%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     GE G +      +DA++LDL L +  G 
Sbjct: 1   MRILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPERDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   +++ +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  GD+ +      VE  G  I L  +E  ++EL     +  LT+      LY 
Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E     ++V I  LRKKL N      +I T+ G GY L E+  D
Sbjct: 181 WDTEVSSNAVEVHIHHLRKKLGN-----RFIRTIHGVGYTLGESECD 222


>gi|317047328|ref|YP_004114976.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316948945|gb|ADU68420.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 224

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + L L+ E   +   +  + G+      + D +ILDLGL D  G + 
Sbjct: 4   ILIVEDEKEIRRFVRLALEGEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPDGDGNDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +R +R    S PV +LS  +  +DK+  L +GADDY++KPF   EL+AR+R  +RR +G 
Sbjct: 64  IREVRQWS-SMPVIVLSARTDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRRHQGS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G+++V+L A+ V   G  +HLT  E++++ LL       LT+   LN ++  
Sbjct: 123 QPDPVLSFGEVTVDLAARRVLRSGEEVHLTPTEFRLLSLLLNNAGKVLTQRQLLNQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +++  LR+KL       N++ T  G GY  
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPNHLLTETGIGYRF 222


>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
 gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
           str. CI]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++          LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
 gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
           DSM 5476]
          Length = 237

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D++ +   I    + E + V     G + ++LC+  +FD +ILD+ + ++ GF 
Sbjct: 18  HILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVMMPELDGFS 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K +TPV +LS      DK+ G + G DDY+ KPF+  EL+ R++AI+ RS+ 
Sbjct: 78  TCREIRKFK-NTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNRSQP 136

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +     L+++   + V +   RI ++ KEY ++  L   K   LT+E  +  ++
Sbjct: 137 PQAEKEIAAFEGLTIDFTGRMVYIDDVRIDMSPKEYDLLFYLVKNKGIALTREKLICDVW 196

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + +D  I  LR +L      ++YI T+ G GY   
Sbjct: 197 GYDFYGDDRTLDTHIKLLRGRLGAY---RHYIVTLRGVGYRFE 236


>gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 231

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVIEAATGSEGLAQAALAKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  ++   KV  L SGA+DY++KPF  +E +ARIRA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 GGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    + + +  LR+KL +      +I T  G GY L   +
Sbjct: 186 PTHVENTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAPS 230


>gi|15866137|gb|AAL10207.1|AF410884_3 MtrA [Mycobacterium avium subsp. paratuberculosis]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
 gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
 gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 19/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ L  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVMLPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                            ++  GDL V+ D   V   G  + LT  E +++   S    T 
Sbjct: 125 AGGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 LSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 233


>gi|312621388|ref|YP_004023001.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201855|gb|ADQ45182.1| two component transcriptional regulator, winged helix family
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 221

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 128/225 (56%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED + L   I   LK++ FNV  +   +D +      + D +ILD+ L D+ G+EV
Sbjct: 4   ILVVEDQQDLNQIITRFLKNDGFNVINSYTAKDALNKL--NDADLVILDIMLPDMEGYEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+    +K   P  IL+  S   DK++G + GA+DYI+KPF+  EL+AR++ ++RR+R  
Sbjct: 62  LKE--ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRNF 119

Query: 123 AQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +S+ + G  + +      V V G  ++LT KE++++  L+  K+   +++  L  ++  
Sbjct: 120 EESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E + +DV I +LR+KL +    K  I+TVWG GY L E  +
Sbjct: 180 DFIGETRTVDVHIKQLREKLKDY---KFLIKTVWGVGYKLSEEKE 221


>gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   ++L L+   + V      ++  + C  + FD I+LD  L D  G +
Sbjct: 3   RILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEA-DGCLEHGFDLILLDRNLPDGRGLD 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R LR      P+  L+   +  D + G ++G DDYI+KPF+ E L  RI A++RRS  
Sbjct: 62  YCRELR-KSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G  +     GD+SV+ +   V +    I L+  EY+++ELL   K   LT++M +  
Sbjct: 121 ALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D  +   +   ++V I +LR+K+   AG   Y+ TV+G GY   E 
Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTFGET 228


>gi|242240125|ref|YP_002988306.1| DNA-binding transcriptional regulator BaeR [Dickeya dadantii
           Ech703]
 gi|242132182|gb|ACS86484.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 243

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 113/228 (49%), Gaps = 3/228 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++  +  +    G D     + +    ++LDL L    G  +
Sbjct: 16  VLIVEDEPKLGQLLVDYLQASGYATHWLTQGNDVEPWVRAHPCRLVLLDLMLPGRDGLSL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +A+R    + P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ ++RR    
Sbjct: 76  CQAIRGFS-NVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCHWQ 134

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++   VT    L ++         G  + LT  E++++ +LS   N   ++E  L++LYD
Sbjct: 135 SEPTAVTDRPALLIDQYRYQASYLGRNLDLTPAEFRLLRILSAEPNRVFSREQLLDNLYD 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                  + ID  I  LR+KL       ++I TV+G GY     A  E
Sbjct: 195 DYRVVTDRTIDSHIKNLRRKLEQFDQETSFIRTVYGIGYRWEAAASQE 242


>gi|194468210|ref|ZP_03074196.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
 gi|194453063|gb|EDX41961.1| two component transcriptional regulator, winged helix family
           [Lactobacillus reuteri 100-23]
          Length = 239

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL+IED+ ++   + +  K E +       G +  E      +++D I+LDL L    
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWQYEFAYDGVEAEEKFNAAPHKWDIILLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 SRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           +  +               I T +  +N   + V + G  +  LT KE+ +++ L+ +  
Sbjct: 121 THLNKLEEVQETDSDDTFDIQTKNFKMNTKTREVFLYGKPVSDLTPKEFDLLKTLASKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY   +   
Sbjct: 181 QVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKFDDEGN 238

Query: 227 D 227
           D
Sbjct: 239 D 239


>gi|254776645|ref|ZP_05218161.1| DNA-binding response regulator MtrA [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|45645201|sp|Q93CB8|MTRA_MYCPA RecName: Full=DNA-binding response regulator mtrA
 gi|61228246|sp|P0A5Z4|MTRA_MYCTU RecName: Full=DNA-binding response regulator mtrA
 gi|61228247|sp|P0A5Z5|MTRA_MYCBO RecName: Full=DNA-binding response regulator mtrA
 gi|509815|gb|AAB07804.1| MtrA [Mycobacterium tuberculosis H37Rv]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
 gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
           [Micromonospora sp. ATCC 39149]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQRS-HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSP 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ 
Sbjct: 122 DVAESGAPTLAAGPVRMDIERHVVTVDGGTVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR K+        +I TV G GY    
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKFEP 227


>gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 243

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 110/234 (47%), Gaps = 11/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   +   L     +V     G +  +L   +  D ++LDL +    G  +
Sbjct: 7   ILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLMMPGEDGLSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+ M+   D++ GL+ GADDY+ KPFN  EL+ARI+A++RR+   
Sbjct: 67  TRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRAPAE 126

Query: 123 AQS----------LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             +           +      +++  + +    G  + L+  E+ ++          L++
Sbjct: 127 GDAAAPTSGGGGHRLRFDGWVLDMATRDLTDPDGVVLTLSAGEFDLLRAFVEHPRRVLSR 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +  L+     +  P  + ID+ + +LR+ L++       I+TV G GY+   + 
Sbjct: 187 DQLLDLARGRQAIPFDRSIDIQVSRLRRXLNDDPKEPQLIKTVRGGGYLFTPDV 240


>gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
 gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
           12755]
          Length = 261

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           +ILL+ED+++LA  I+  L  E +       G++ + L   +   FD I+LD  L    G
Sbjct: 30  KILLVEDEESLASFIQSELTFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 89

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R      P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR 
Sbjct: 90  ITVARRIRKES-DIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 148

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  A+        +V G+L +++    V+V G  I LT KE+ ++  L        T++ 
Sbjct: 149 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 208

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            LN ++    + +  ++DV+I  LR KL +  G    I TV G GYVLR + ++
Sbjct: 209 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 261


>gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L +EDD+A+A  +   LK E + V   D     ++      FD ++LD+GL D  G+
Sbjct: 3   MKLLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGLPDGSGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++    +  +   PV  L+ +    + V GL  G DDYI+KPF   EL++R+R++ RR  
Sbjct: 63  DICTYAKSRQ-DVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRMRSVQRRYH 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++    LS+      V  +   + LT  EY+++ +        L++   L  ++D
Sbjct: 122 RQEEDIVQIQYLSIYPKQGKVYREQEEVLLTALEYRLLMVFINHPQQVLSRSQLLEGIWD 181

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              D      + V+I +LR+KL       + I TV G GY L 
Sbjct: 182 AAGDFVNDNTLTVYIKRLREKLERDPQNPSIIVTVRGLGYRLE 224


>gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 237

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +++ +   L    ++  V   G   +E+ + ++   ++LD+ L  + G E
Sbjct: 4   RVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVWQQWKPSVVVLDVMLPGLSGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A     V +LS     ED++ GL+ GADDY+ KPF+  ELV R++A++RR   
Sbjct: 64  VLRRLRSADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRREER 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A      + +  G + ++  A+T  + G  + LT +E+ ++  L        TK   L 
Sbjct: 124 LAGLDLTPTKLHAGPVVIDTAARTATLDGAELSLTHREFDLLAFLVAHAGKAYTKVELLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   + V + +LR+K+         + TV   GY+   +A
Sbjct: 184 RVWGWDF-GDSSTVIVHVRRLREKIEADPSDPKLVLTVPRTGYLFAGDA 231


>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 91/223 (40%), Positives = 133/223 (59%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED+K +A ++  +L+  N+ V +   GE G++      +D IILD+ L  + G 
Sbjct: 1   MRILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIMLPKMNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +VL++LR  KI+TPV +LS     EDKVRGL +GADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  DVLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  GD+ +N +   V        LT KE Q++ELL   K   ++K   +  L+
Sbjct: 121 EIIPEGILSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E   ++V+I  LRKKL  A G  N I+T+ G GY+L+
Sbjct: 181 GFDGEAEDNHVEVYISFLRKKL-AALGSTNTIQTIRGLGYMLK 222


>gi|121595048|ref|YP_986944.1| two component heavy metal response transcriptional regulator
           [Acidovorax sp. JS42]
 gi|120607128|gb|ABM42868.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax sp. JS42]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 129/230 (56%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    ++  +   G DG+ +    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGAYLRQGLSEAGYSPDLVPNGADGLHMAIHGQYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGSEGSTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           D   + +  +I+V + +LR K+ +       I+TV G GYVL  +  +E 
Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHPVKLIQTVRGMGYVL--DVPEEA 227


>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
 gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 134/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+K L+  +EL L+ E +   V   G  G+EL    ++DAI+LDL L ++ G +
Sbjct: 3   RILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELNGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R  K +TP+ +++   S+ D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  ICRRVRQVK-NTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVEL 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G+ Q+ +   DL++  + + V      I LT +EY+++  L    N  L ++  L
Sbjct: 122 ENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDTLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E  ++DV+I  LR K+ +  G  +YI+TV G GYV+R
Sbjct: 182 KKVWGYETQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGYVMR 227


>gi|41409458|ref|NP_962294.1| hypothetical protein MAP3360c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118464131|ref|YP_883351.1| DNA-binding response regulator MtrA [Mycobacterium avium 104]
 gi|254822993|ref|ZP_05227994.1| DNA-binding response regulator MtrA [Mycobacterium intracellulare
           ATCC 13950]
 gi|296168959|ref|ZP_06850628.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|41398289|gb|AAS05910.1| MtrA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118165418|gb|ABK66315.1| DNA-binding response regulator MtrA [Mycobacterium avium 104]
 gi|295896428|gb|EFG76081.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD A+   + L L+   F +        G         D I+LD  L D+ G + 
Sbjct: 5   ILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVSGIDW 64

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+        P+ +L+     EDKVRGL+ GADDY++KPF+  EL+ARIRA++RR+ 
Sbjct: 65  ARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRRTT 124

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A    +    L+++  +  V   G  + +   E++++      +    T+   L++++
Sbjct: 125 PDAGDQPVEVEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDNVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LRK L+  +G  + ++TV G GY  
Sbjct: 185 GTNVYVEERTVDVHIRRLRKVLAE-SGHDHLVQTVRGTGYRF 225


>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
 gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
           WAL-14673]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL  +DD  +   + ++L+ E F V     G++ +E       D IILD+ +    G  
Sbjct: 9   RILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMPGKSGIL 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K++ P+  L+  +   DK  G  +G DDY++KPF+  ELVAR++A++RR   
Sbjct: 68  ACLEIR-KKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 R    + I   DL +N D++ V ++G  I LT  EY+++ LL+  +    T + 
Sbjct: 127 YQGGGNRKEDDAQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186

Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++          + V I  LRKKL        YI  VWG+GY + 
Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|315655993|ref|ZP_07908891.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
 gi|315490057|gb|EFU79684.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
          Length = 257

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+AL+  I ++L+S  +       G   ++  +  E D ++LDL L  + G E
Sbjct: 34  KILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMDGIE 93

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  S   D V GL++GADDYI KPF  +EL+AR+ A +R    
Sbjct: 94  ICRRIREFS-NVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 152

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    + +NL +  V  +G  ++LT  EY ++  L+ +     ++E  L  ++  
Sbjct: 153 AEHDVLKAAGVEINLASHEVSREGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 212

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R   + ++++V + +LR K+         + TV G GY +
Sbjct: 213 RHASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 252


>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
 gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
          Length = 222

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 125/223 (56%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+   I   L +      +   G++ +EL +  ++DA++LD+ +  + GF 
Sbjct: 3   RILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDGFG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R    S P+  L+ +   E+ +RG   GADDY++KPF+   L+A+++A++RRSRG
Sbjct: 63  VCRAVRRQS-SVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ ++  G + V+  A+     G  I L+ +EY+++  L   +   L++   L+ ++ 
Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E + + +DV +  LR  L  A      I+TV+  GY L E
Sbjct: 182 LDFEGDDRAVDVRVRSLRAALGKAGKQ---IKTVFKAGYRLEE 221


>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
 gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
           proteoclasticus B316]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   ++L L++E + V     G++ +++    +    +LD+ + ++ GF 
Sbjct: 4   KILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVMMPEMDGFH 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ +R    + PV I+S   +  DK+ GL  GADDY+ KPFN  E VAR+R+ +RR   
Sbjct: 64  VLKEMR-KNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHA 122

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +     +I   DL ++ +A  +  QG +I LT  E +M+EL         TKE  
Sbjct: 123 LKGDLQPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +++          I V I KLR KL +      YI TV G GY + + 
Sbjct: 183 YEYVWGDTYVVADNNIMVAISKLRSKLCDDPSA--YIRTVRGLGYRMEKE 230


>gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
 gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
           29799]
          Length = 224

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ L   I   L+ E + V     G +  E      +D +ILDL L  + G 
Sbjct: 1   MKILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERILVESYDLVILDLNLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR++R  K    V ILS  SS+ ++V GL  GADDY++KPF  EEL AR+R+++RR+ 
Sbjct: 61  DILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G L ++   + +      + LT KE++++E L L    T+++E  L H++D
Sbjct: 121 VPQSTAVTAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P    + + I  LRKKL  A G  + I T  G+GY L 
Sbjct: 181 TESNPFSHSVRMHISSLRKKLKEALGH-DPIATKIGQGYYLE 221


>gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357]
          Length = 219

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++E++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|259047740|ref|ZP_05738141.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035931|gb|EEW37186.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/235 (27%), Positives = 125/235 (53%), Gaps = 13/235 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M +L+IED +A+   +E+  ++E +       G++G +     +  +  +ILD+ L  + 
Sbjct: 2   MHVLMIEDTEAVCEMMEMFFENEGWKASFYHDGKEGFDAFMENQSKWGIVILDVNLPSMD 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R    + P+ +L+   S  D+V GL+ GADDY++KPF+   ++ARI+A++RR
Sbjct: 62  GMQICRQIRQVNQAVPIVMLTARDSESDQVIGLEIGADDYVAKPFSAVTIMARIKALLRR 121

Query: 119 SRGHAQSL--------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTL 169
           ++  + S         + T  + +N       + G +I  LT KE+ ++ +++  +    
Sbjct: 122 TQRSSASGSGALSTFDVETDHVKINTKTHEAFIDGKQIENLTPKEFDLLMVMAKHQRQVF 181

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           T+E  L  +++     + + +D  I KLR+K+     G + I TVWG GY   ++
Sbjct: 182 TREHLLTKIWEDPFYGDERTVDAHIKKLRQKIEAV--GPHVIHTVWGVGYKFDDS 234


>gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M  L+++DD  +A ++   L S+ + V V   G DG+        D I+LD+ L    G+
Sbjct: 1   MHALVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIMLPGHNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR   I TPV +L+      D+   L +GADDY+ KPF+   L A +RA++RR  
Sbjct: 61  VVVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +V GDL V+    TV      I LT +E+ ++E L    +T ++K   +  ++D
Sbjct: 121 RERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V++  LRK++ +   GK  IETV G GY LR
Sbjct: 181 ENFDGDANIVEVYVGYLRKRI-DTPFGKRSIETVRGAGYRLR 221


>gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CFN 42]
 gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CIAT 652]
 gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein
           [Rhizobium etli CNPAF512]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+ ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR++A++RR+
Sbjct: 64  LCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     S++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 RPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMQDVIRTVRGAGYSME 226


>gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens
           T118]
 gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family
           [Rhodoferax ferrireducens T118]
          Length = 221

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  S+  +L++E + V     GE          +D ++LDLGL    G 
Sbjct: 1   MRLLLVEDDLMIGESVLDLLRAEGYAVDWVKDGEMADTALDSQTYDLVLLDLGLPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR  K  TPV + +   +I  +V GL  GADDYI KP+  +EL+ARIRA++RR+ 
Sbjct: 61  AVLRRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     +S+N   + V + G  + L+ +E+ ++ELL  R    L++      LY 
Sbjct: 121 GRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +D+     ++V+I  LRKKL     G   I+ V G GY++ ++A 
Sbjct: 181 WKDDLSSNAVEVYIHGLRKKL-----GPRIIQNVRGVGYMIPQSAP 221


>gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 255

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 36  MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 95

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 96  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 155

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 156 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 215

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 216 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 255


>gi|310658379|ref|YP_003936100.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
 gi|308825157|emb|CBH21195.1| DNA-binding response regulator [Clostridium sticklandii]
          Length = 233

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK +A +IE+ +K++N+ V+    G+  I++ +      II+D+ +  + GF  
Sbjct: 6   ILIVEDDKQIADAIEIYMKNQNYGVFKAHNGQLAIDIFEKEVIHLIIMDVMMPVMDGFTA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R +  + P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR    
Sbjct: 66  IMKIRQSS-TVPIIVLSAKSEDMDKIAGLNIGADDYVTKPFNPMELIARVNSNLRRYVNF 124

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      LI  GD++++ + K + V G  +  T  EY+++ LL        + +  
Sbjct: 125 SMKKESDKNSKLISIGDIALDDERKEISVLGAPVKTTPIEYKILYLLMSNAGKVFSIDEI 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++         + V I ++R+KL        Y++ VWG GY   
Sbjct: 185 YEKVWNEPAY-SPDTVAVHIRRIREKLEINPKEPKYLKVVWGIGYKFE 231


>gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220]
 gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220]
          Length = 268

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   ++  L    F++     G  G E      +DA+ILDL L  I G 
Sbjct: 50  MRILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 109

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 110 DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 169

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G+++++  A      G  + L  KE+ ++ELL   K   L +++    LY 
Sbjct: 170 GQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 229

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      ++V +  LR+KL +      +I TV G GY L
Sbjct: 230 WDENVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 265


>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
 gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
 gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
           [Roseobacter sp. MED193]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A    +   L+++ F V   + GE+G+ L +    D I+LD  + ++ G EV
Sbjct: 8   VLIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIEV 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+    +   P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   D+ ++ +   V    + + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSTVGMRLEFDDIILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQ-FGGADPVRTVRGAGYAL 228


>gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
 gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 13/233 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  +   L  E F       G  G    + +  D ++LD  L D  G +
Sbjct: 5   KILIIEDEGPIADLLAYGLAMEGFETRTAASGAAGFRELEDFSPDLLLLDWMLPDQSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +  A  + P+ +++  S I DKV GL+ GADDYI+KPF+  E+VARIR I+RR   
Sbjct: 65  ICKKV-TADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + +I    + + ++ + V+  G  I LT KE+ ++  L   +    T+  
Sbjct: 124 ANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRSE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+ ++      + + +D  I +LRKKL  +    + I TV+G GY   + A+
Sbjct: 184 LLDLVWGYDFMGDTRTVDTHIQRLRKKLDAS----DLITTVFGIGYKFEKVAE 232


>gi|225163853|ref|ZP_03726148.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
 gi|224801534|gb|EEG19835.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED++ +   +E  L  +++   +        +       DAI+LDLGL D  G 
Sbjct: 1   MKILIVEDERKVGQFVERALAEQHYTTRLVMTCAAARDALAESPADAIVLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R A  + PV ILS   ++ D++ GL  GADDY+ KPF+ +EL+AR+R+++RR  
Sbjct: 61  ALLREWRAAGFNEPVLILSARDAVSDRILGLNLGADDYLPKPFSIDELLARVRSLLRRHA 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   +++    + ++L A+T   QG  + LT +E+ ++EL        LT+ +    +
Sbjct: 121 SPSAKVTVLEHRGIRLDLLARTATAQGRPVELTNREFALLELFLQNTGRVLTRTLIAEKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSN---AAGGKNYIETVWGRGYVL 221
           ++   + E  +IDV++ +LR+K       A     I+TV G GY +
Sbjct: 181 WEDSYDMETNLIDVYVRRLRQKFEPSASDAFSPPLIKTVRGTGYQM 226


>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
 gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
          Length = 231

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   ++  L    + V     GE  ++       D +ILD+ +  + G E
Sbjct: 4   RILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVD-DSLDLVILDVMMPGLSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R +  + P+  L+  SS  DK  GL +G DDY++KPF++EEL AR+ A +RR   
Sbjct: 63  TCQQMRASS-NVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   ++ +V G L V+ +   V  +  +I L+  EY+M++LL  R+N   + +   
Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNIY 181

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++           + V I KLR K+ +      YI+T WGRGY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPFYIKTEWGRGYRF 228


>gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 118/212 (55%), Gaps = 5/212 (2%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L    + V     GE      K   F+ IILDLGL  + G  +L+ +R    S
Sbjct: 13  GDAVKAGLTQFGYVVDWLKDGEAARAALKSESFELIILDLGLPKLSGLSLLQNIRHDGNS 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV IL+   SIED+V+GL SGADDY  KPF+  EL ARIRA+VRRS+G A S++   ++
Sbjct: 73  TPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRRSQGRADSVLQYKNI 132

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           +++  A +V V    +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V
Sbjct: 133 TLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEV 192

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            I  LRKKL       N+I T+ G GY+  +N
Sbjct: 193 HIHNLRKKL-----NANFIRTIRGVGYMAEKN 219


>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL++D++ +   +E  L+ E F +     G + +E     +   ++LD  L ++ G EV
Sbjct: 5   LLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPEMSGIEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR       + +++  +   DK+ GL+ GADDYI+KPF+  EL ARIR+++RR  G 
Sbjct: 65  CRELRKMS-RMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRMEGL 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G+L ++        QG  I LT  E++++  L+ +     ++   L  L +
Sbjct: 124 EFTEQQMQRGELLISESQCRAWKQGKEIPLTPTEFRLLLTLAAKPGIVYSRLQLLAAL-E 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + +D  I +LRKK+ +A     YI+TV+G GY   + 
Sbjct: 183 DELLNDERTVDAHISRLRKKIEDAPSDPVYIQTVYGFGYRFGDQ 226


>gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 238

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++ +   + + L+ E + V     G+DG+E  K+ ++  ++LD+ L  + G  
Sbjct: 4   RVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPILNGKS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR  K +TPV I+S  +  + +V G + GADDY+ KPF+  EL+ RI AI++R++ 
Sbjct: 64  ILSELRKTK-ATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L +++++  V V+   + LT KE+ ++  L+   +    +  
Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDTEVLLTPKEFDLLLFLAKSPDKAFRRNE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  ++D     +++ +D  I ++RKK    +      I TVWG GY  
Sbjct: 183 ILRAVWDYDFYSDLRTVDTHIKRVRKKFDKISPKVSKMIVTVWGIGYKF 231


>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 238

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  + + + L L+ E   V     G + ++  +    D I+LD+ +  + GFE 
Sbjct: 9   VLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVMMPVMDGFEA 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      P+ +L+     ED+VRGL+ GADDYI KPF+  EL++RIRA++RR    
Sbjct: 69  LRRLRQFS-QVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRRHYTA 127

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                        LS++   + V V G R++L   EY+++  L        T EM L  +
Sbjct: 128 PPVPQTLVQVDERLSIDFARREVLVSGERVNLRPTEYRLLYHLVQNAGYVQTHEMLLTKV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + ++I  LR+K+        YI T  G GY   +
Sbjct: 188 WGPEYREESHYLRLYITYLRQKIEQDPANPKYILTERGVGYRFVD 232


>gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  S++  L+ +         G+          +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR +  S PV +++   +I D++RGL +GADDY+ KPF+ +EL AR+RA+ RR  
Sbjct: 61  DVLTRLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G L +N     + + G  + L+ +E+ +++ L  +    L++      LY 
Sbjct: 121 GRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             DE E   ++V+I  LR+KL     G   I+ + G GY+
Sbjct: 181 WGDEIESNAVEVYIHSLRRKL-----GAEQIKNIRGVGYL 215


>gi|254164047|ref|YP_003047155.1| DNA-binding transcriptional regulator BasR [Escherichia coli B str.
           REL606]
 gi|253975948|gb|ACT41619.1| DNA-binding response regulator in two-component regulatory system
           with BasS [Escherichia coli B str. REL606]
          Length = 222

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ K F  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKLFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G GY+L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIRTVRGFGYMLVANEEN 222


>gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
 gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
           49176]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ L  S+   L+ + + V     GE+  E+     +D IILDL L  + G 
Sbjct: 13  MRILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDGM 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R     T V ILS    ++DK+ GL SGA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 73  EVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRV 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+LS++  A+TV  +G  + LT KE  ++E L L +   +++E  ++H++D
Sbjct: 133 VQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVWD 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           G  +     I V I  LRKKL  A G  + I    G+GY++   A
Sbjct: 193 GSVDSFSNSIRVHISALRKKLRTALGY-DPITNRVGQGYMIGGEA 236


>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
 gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
 gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
 gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +E++L  E + V +   GE+ + L      D IILD+ +    GF 
Sbjct: 8   KILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST-IDLIILDVVMPVKTGFV 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+  L+  +   DKV G  +G DDY+SKPF+  EL++R+++++RR   
Sbjct: 67  ACSEIRE-KTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    +++ T +L VNLD + V + G  + LT  EY ++ L+   +    + E  
Sbjct: 126 YQGKEKEKEPNILKTKELCVNLDTQDVTLNGQPVFLTTIEYSILVLMLKNRKKVFSSENL 185

Query: 175 LNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++D +        I V I  LRKKL        YI+T WG+GY +
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYI 233


>gi|256396695|ref|YP_003118259.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256362921|gb|ACU76418.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 122/219 (55%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL+  + + L+ E F       G+  +++ + ++ D ++LDL L    G +
Sbjct: 7   RVLIVDDDIALSEMLGIALRGEGFETTSVADGDRALQVFRDFKPDLVLLDLMLPGRDGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRLIRGESG-VPIIMLTAKSDTVDVVVGLESGADDYVIKPFKVKELVARVRARLRRADE 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDLS+++   +V+ +G +I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 PKPETLAIGDLSIDVAGHSVKREGRQIPLTPLEFDLLVALARKPWQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHAADTRLVNVHVQRLRSKIEVDPENPEIVVTVRGVGYK 224


>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 254

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 110/233 (47%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +   +   L+ E + V     G   +   +    D ++LD+ +  + G   
Sbjct: 16  VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR A  + PV +L+      D+V GL +GADDY++KPF  +EL+AR+RA++RR    
Sbjct: 76  CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALT 135

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                           ++   DL ++   + V   G  I LT  EY ++E+        L
Sbjct: 136 GEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQAL 195

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L  ++    EP    +DV++  +RKK          ++TV G GY LR
Sbjct: 196 TREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFD-DLPRLVQTVRGVGYALR 247


>gi|126665087|ref|ZP_01736070.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
 gi|126630457|gb|EBA01072.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter sp. ELB17]
          Length = 243

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 13/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++    V +   G   +E  +  + D ++LDL L    G  
Sbjct: 9   RILIVEDDERLASLTRDYLQNNGLTVSIESHGGAAVERIRNEKPDLVVLDLMLPGEDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  + S P+ +L+  +   D++ GL+ GADDYI KP     L+ARIRA++RR   
Sbjct: 69  ICRRVRP-RYSGPILMLTARTDDMDQILGLEMGADDYIGKPVQPRVLLARIRALMRRVAE 127

Query: 122 HAQS------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             Q              +   +L ++   +   + G  + LT  E+ ++ LL+      L
Sbjct: 128 KNQPLVGSDPVSEGPVRVKFNELVIDRSMREAWLSGVTVDLTSAEFDLLWLLASNAGRVL 187

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + A
Sbjct: 188 SREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLFVKEA 243


>gi|291458269|ref|ZP_06597659.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418802|gb|EFE92521.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 240

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I + L  E F +     G D +++    + D +I+D+ +  + G   
Sbjct: 4   ILVCDDDKQIVEAISIYLAGEGFRLLKAYDGYDALKIMDQEKVDLLIIDVMMPGLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  K S P+ ILS      DK+ GL  GADDYI+KPFN  E+VAR+++ +RR    
Sbjct: 64  TLKIRE-KSSIPIIILSAKGEDNDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYTQL 122

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                 G+  S+  +G L +N D K V V+G  + LT  EY ++ LL        + +  
Sbjct: 123 GNIGEAGNLDSIYSSGGLVINDDTKEVTVEGEPVKLTPIEYNILLLLVKNAGKVFSIDEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++ +       + V I  +R+K+        Y++ VWG GY + + 
Sbjct: 183 YTSIWNEQAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKVEKQ 232


>gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator
           [Geobacter sp. M18]
 gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. M18]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA    + L+   F V  T+ G   +EL +       +LDL L D+ G  V
Sbjct: 5   ILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLMLPDLSGEAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L  A    PV +L+  SS E+++ G   GADDYI KPF+  ELV R++A+++R+   
Sbjct: 65  CREL-TASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLKRAGKV 123

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A +        G L ++  + +V  +G  + LT  E++++  L+     T T+E  ++ +
Sbjct: 124 AGAADRLSFNGGTLILDNASFSVICKGQPVKLTVVEFKLLFALASTPQKTFTREELIDKV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + E   + ID  I  +R KLS+A     ++ T++G GY      KDE
Sbjct: 184 MGYQFEGYERNIDSHIKNIRHKLSDAPHSPVFVLTIYGLGYRFG-GVKDE 232


>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/224 (38%), Positives = 132/224 (58%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  +I TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V+G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKE 227


>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
 gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V+I  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYIHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
 gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 123/225 (54%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++++ V     GEDG+     +  D ++LDLGL D+ G +V
Sbjct: 7   ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGLPDLDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R+ +G 
Sbjct: 67  LRGLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQGR 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G LS++L  + V ++G  I LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 EALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + V +  LR+KL +      Y+ T  G GY LRE  
Sbjct: 186 PSHVGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRLREPV 230


>gi|77459994|ref|YP_349501.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383997|gb|ABA75510.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 222

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L+ + + V     G D +       +D I+LDLGL  +PG 
Sbjct: 1   MRLLLVEDHVPLADELLAGLQRQGYAVDWLADGRDAVYQGSSEPYDLIVLDLGLPGVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R   ++ PV IL+   S  +++ GL++GADDY++KPF+ EEL  RI++++RRS+
Sbjct: 61  EVLAQWRAGGLTIPVLILTARDSWAERIEGLKAGADDYLTKPFHPEELYLRIQSLLRRSK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GQANQPTLKAAGLHLDEGRQCVVRDGADIQLTAAEFRLLRYFMLHPEQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           DG  E +  +++V +  LR+KL     GK+ IET  G+GY+    A
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GKSVIETRRGQGYLFGGQA 221


>gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
 gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V  +   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232


>gi|170720972|ref|YP_001748660.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|169758975|gb|ACA72291.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 222

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR++
Sbjct: 61  EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAK 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V  +G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYI 216


>gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
 gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB
           [Agrobacterium sp. H13-3]
          Length = 227

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED++AL+  +   L++E ++V     G++     +    D +ILD  L  + G E
Sbjct: 4   KIAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 64  LCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     S++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 RPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSHMQDVIRTVRGAGYSME 226


>gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  ++   +  +   V             +   +D I+LDL L D  GF
Sbjct: 1   MRVLLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR +R   I+TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ A+ RR R
Sbjct: 61  GFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRYR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   +I  G+L ++L    +   G  + LT +E+ + E    R    L++    + LY 
Sbjct: 121 GNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLEDRLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E E   I+V++ +LRKKL   A     I TV G GY L  + 
Sbjct: 181 FGAEIESNTIEVYVSRLRKKLGRDA-----IVTVRGMGYRLETHG 220


>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 237

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 23/238 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  +  L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 5   HVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRANRPDIALLDVMVPGMDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGH 123

Query: 120 RGHAQS---------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
            G  Q+               ++  GDL V+ +   V   G  + LT  E +++   S  
Sbjct: 124 AGGPQNGANGSAGADGSDERGVLSFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSA 183

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 184 PGTVLSRDRLLERVWDYDWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 236


>gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11]
 gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +       L +    V   + G + +      ++D ++ D  + D+ G 
Sbjct: 1   MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF   EL+ARI A+ RR R
Sbjct: 61  SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G      + +    L ++L ++T    G  + L  KE++++E+L   K    T+ M L  
Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   EP   +++  + +LR K+        YI T+ G GY+ 
Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEK-PFDAEYIRTIRGSGYMF 223


>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G++ +E  +    D +ILD+ L DI G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVMLPDIDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR  
Sbjct: 60  ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVT 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    +I  G++ V    + V V G  + LT +E+ + +L          +E  L 
Sbjct: 120 KREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL  +     +I+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLKASG---EHIKTIYGVGYKL 221


>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
 gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
           taxon 329 str. F0087]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 114/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED++ +A  I   L+     V V   G     + +   FD ++LD+ +  + G E
Sbjct: 8   KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDGLE 67

Query: 62  VLRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           V R  R      TP  +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR R
Sbjct: 68  VCRQFRLKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRGR 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++ D +        I LT KEY+++E     +   L++ + L  ++D
Sbjct: 128 ERPDRQLWCHDLVLDCDTRRARRGDTVIELTVKEYRLLEYFMTHQGVALSRLVLLKDVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+         I T+ G GY++
Sbjct: 188 KNFDTNTNVVDVYVNYLRNKIDRDF-EVKLIRTIVGMGYIM 227


>gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 218

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  ++   L   ++       GE  +   +   F  +ILD+ L  I G 
Sbjct: 1   MRVLLVEDDTMLGETMTASLARHHYTADWVTTGESALHALQTDSFPLVILDISLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R     TPV ILS    + D+V GL  GADDY+ KPF  EEL+AR+ A++RRS 
Sbjct: 61  QVLKKMRDRGDKTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +I   D+S+++ +  V +    I+LT  E+++++ L       L+K   L +++ 
Sbjct: 121 GSADDIITVRDVSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   +  I+V I  LRKK+      K  IE + G GY+++
Sbjct: 181 WDESAGLNSIEVHIHNLRKKM-----PKGTIENIRGVGYIIQ 217


>gi|254519763|ref|ZP_05131819.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
 gi|226913512|gb|EEH98713.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 121/232 (52%), Gaps = 15/232 (6%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+IEDD+ ++  +   L  E + V V   G +  +  K +  D I+LD+ L D  
Sbjct: 1   MRESILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF V R +  +  + P+ +L     I DK+ GL+ GADDYI+KPF+  E++ R+R  +RR
Sbjct: 61  GFSVCRNI--SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRR 118

Query: 119 SR-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                       Q  I+  ++ +N   ++V V    I L  KE++++  L    N   ++
Sbjct: 119 REEMKKLITSKEQEEILVDNIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKVHSR 178

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              L+ ++      + + +DV I +LRKKL +       IET++G GY+L+E
Sbjct: 179 NQLLDLIWGYDFLGDTRTVDVHITRLRKKLKDNFN----IETIFGVGYMLKE 226


>gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622]
 gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus]
 gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622]
          Length = 226

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED++ LA  ++  L++  F       G  G+   + +  D ++LDL L D+ G E
Sbjct: 3   RILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           VLR L+         V I+S      D+V+GL+ GADDY+ KPF+  EL+ R++A++RR+
Sbjct: 63  VLRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRA 122

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +++ +GD+S++     V V+G  + LT  E++++  L  R +   T+E+ L+ 
Sbjct: 123 DAEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSD 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  + E   + +D  I +LR+KL  A    + IETV G GY L   
Sbjct: 183 VWGIQAEIHTRTVDTHIKRLREKLGPAG---DIIETVRGVGYKLSPP 226


>gi|15610382|ref|NP_217763.1| two component sensory transduction transcriptional regulatory
           protein MTRA [Mycobacterium tuberculosis H37Rv]
 gi|31794426|ref|NP_856919.1| two component sensory transduction transcriptional regulatory
           protein MTRA [Mycobacterium bovis AF2122/97]
 gi|121639135|ref|YP_979359.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148663109|ref|YP_001284632.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium tuberculosis H37Ra]
 gi|148824448|ref|YP_001289202.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis F11]
 gi|167966684|ref|ZP_02548961.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           H37Ra]
 gi|215405258|ref|ZP_03417439.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 02_1987]
 gi|215413124|ref|ZP_03421825.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215428728|ref|ZP_03426647.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T92]
 gi|215432210|ref|ZP_03430129.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis EAS054]
 gi|215447549|ref|ZP_03434301.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T85]
 gi|218755032|ref|ZP_03533828.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|219559305|ref|ZP_03538381.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis T17]
 gi|224991628|ref|YP_002646317.1| two component sensory transduction transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800288|ref|YP_003033289.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233859|ref|ZP_04927184.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis C]
 gi|254365870|ref|ZP_04981915.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis str. Haarlem]
 gi|254552349|ref|ZP_05142796.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260188294|ref|ZP_05765768.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260202407|ref|ZP_05769898.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|260206597|ref|ZP_05774088.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289444827|ref|ZP_06434571.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|289448934|ref|ZP_06438678.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555524|ref|ZP_06444734.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289571473|ref|ZP_06451700.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T17]
 gi|289575966|ref|ZP_06456193.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289747064|ref|ZP_06506442.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           02_1987]
 gi|289751940|ref|ZP_06511318.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T92]
 gi|289755369|ref|ZP_06514747.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           EAS054]
 gi|289759386|ref|ZP_06518764.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           T85]
 gi|289763434|ref|ZP_06522812.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|294993814|ref|ZP_06799505.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis 210]
 gi|297635899|ref|ZP_06953679.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297732896|ref|ZP_06962014.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298526722|ref|ZP_07014131.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|306777575|ref|ZP_07415912.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782296|ref|ZP_07420633.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306795007|ref|ZP_07433309.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306799205|ref|ZP_07437507.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306805053|ref|ZP_07441721.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306809239|ref|ZP_07445907.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306969342|ref|ZP_07482003.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306973694|ref|ZP_07486355.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307081403|ref|ZP_07490573.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu011]
 gi|313660228|ref|ZP_07817108.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|2072713|emb|CAB08347.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY
           PROTEIN MTRA [Mycobacterium tuberculosis H37Rv]
 gi|31620022|emb|CAD95366.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY
           PROTEIN MTRA [Mycobacterium bovis AF2122/97]
 gi|121494783|emb|CAL73264.1| Two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124599388|gb|EAY58492.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis C]
 gi|134151383|gb|EBA43428.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis str. Haarlem]
 gi|148507261|gb|ABQ75070.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium tuberculosis H37Ra]
 gi|148722975|gb|ABR07600.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis F11]
 gi|224774743|dbj|BAH27549.1| two component sensory transduction transcriptional regulatory
           protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321791|gb|ACT26394.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289417746|gb|EFD14986.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T46]
 gi|289421892|gb|EFD19093.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289440156|gb|EFD22649.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289540397|gb|EFD44975.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis K85]
 gi|289545227|gb|EFD48875.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T17]
 gi|289687592|gb|EFD55080.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           02_1987]
 gi|289692527|gb|EFD59956.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis T92]
 gi|289695956|gb|EFD63385.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           EAS054]
 gi|289710940|gb|EFD74956.1| two component sensory transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis GM 1503]
 gi|289714950|gb|EFD78962.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis
           T85]
 gi|298496516|gb|EFI31810.1| two component system sensor transduction transcriptional regulatory
           protein mtrA [Mycobacterium tuberculosis 94_M4241A]
 gi|308214117|gb|EFO73516.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325047|gb|EFP13898.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308336786|gb|EFP25637.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308340620|gb|EFP29471.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308344561|gb|EFP33412.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308348357|gb|EFP37208.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308353194|gb|EFP42045.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308356934|gb|EFP45785.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308360935|gb|EFP49786.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis SUMu011]
 gi|323718115|gb|EGB27297.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326902526|gb|EGE49459.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis W-148]
 gi|328460023|gb|AEB05446.1| two component system transcriptional regulator mtrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L+     V     G++   L +  EFD ++LDL +    G  +
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDGLTL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LRV K + P+ +L+ M    D++ GL+ GADDY++KPFN  EL+ARI+A++RR++  
Sbjct: 68  CRELRV-KSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQAE 126

Query: 123 AQS-------LIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q         +      ++++ +  V+  G  + L+  E+ ++++   R    L+++  
Sbjct: 127 TQPAAETLTRDLRFDRWLLDVNRRELVDEDGVGLSLSTAEFDLLKVFLERPQRVLSRDQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+           + ID  + +LR+KL         I+T+WG GY+   + 
Sbjct: 187 LDLARGREAVAFDRAIDTLVSRLRRKLERDPKNPELIKTIWGGGYMFSADV 237


>gi|297528744|ref|YP_003670019.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297251996|gb|ADI25442.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 121/226 (53%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + +L+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +     ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEEKVAFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +  +K ID  I  LRKKL +       I+TV G GY + ++
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKDD-----VIQTVRGVGYKIDKS 221


>gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 222

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 134/221 (60%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  + + ++  L+ E++++  +  GE+G+ L     +D I+LD+ L  + G 
Sbjct: 1   MKILIIEDDVKIVNFLKKGLEEESYSIDYSHNGEEGLYLASVNSYDLILLDIMLPLLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + LR  KI+TP+ +L+   SIED ++GL  GA+DY+ KPF+  EL+ARIR  + R++
Sbjct: 61  EVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIRVQL-RAK 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +   DL ++L AKT +  G  I LT KE+ ++E L   +N  L++ +  + L +
Sbjct: 120 DSTQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLSETVLASMLNN 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     +++V+I +LR K+ +    K  I+T+ G G+ +
Sbjct: 180 MDESNISNLVNVYIYRLRNKI-DKPYEKKLIKTIRGLGFKI 219


>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
           in two-component regulatory system with BaeS, regulates
           RNA synthesis [Acinetobacter sp. ADP1]
          Length = 228

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ++L+ED+  LAH +   L++  F V +   G++  E     + + +ILDL +  + G
Sbjct: 1   MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + R +R      P+ +++  +   D+V GL  GADDY+ KPF+ +ELVAR++A++RR 
Sbjct: 61  LTICRKVREQS-DLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRL 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A+         ++   + +  +   ++LT  E++++EL         ++   L+H+ 
Sbjct: 120 DRKAEPE-QNDLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQVYSRAQLLDHIN 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAG---GKNYIETVWGRGYVLR 222
               +   ++ID  I  LR+K+S AA       +++ V+G GY   
Sbjct: 179 PDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224


>gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R      PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWSG-VPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPESALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
 gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280]
          Length = 219

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +D +ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101]
 gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +++D  L ++ G 
Sbjct: 1   MKLLVVEDDATTGSYIARGLREEGHTVDLVPHGREGLFQASSGSYDVLVIDRMLPEVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A  +TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRPQ 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   +  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 VLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +    +  I TV G GY +
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIHTVRGAGYRI 221


>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
 gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
 gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+ +   IE+ LK+E +NV     G D I+  +  E   IILD+ + ++ G   
Sbjct: 6   VLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIMMPNMDGITA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + + P+ +LS  +   DK+ GL  GADDY++KPF+  EL+AR+++ +RR    
Sbjct: 66  TFKIRAER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +    L+++ DAK + ++G  + LT  EY++ ELL        +       
Sbjct: 125 GTYSEGATKVEIDGLTLDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+ V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +D I+LD+ + ++ GF
Sbjct: 10  MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232


>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 226

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+ A+  +I+  L++E F       GE  +        D IILD+GL D+ G E
Sbjct: 4   RVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPDMSGME 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +  STPV  L+  +   D+V GL+ GADDY++KPF+  EL AR+RA++RR+  
Sbjct: 64  LCKEIRKSH-STPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTHV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                       VN   + +   G  + L+  EY++++    R     +++  +  +++ 
Sbjct: 123 RDHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWEQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +    + +D  I  +R KL   A   + I T  G GY LREN
Sbjct: 183 PETSLDRTVDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225


>gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 17/237 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + STPV +++    +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRGH---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R+            A   +  G ++V L  + V V G  + LT KE+ ++ LL+ R    
Sbjct: 120 RTGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E  ++ ++    E   + ++V +  LR KL    G    IETV G GY L   A
Sbjct: 180 FRREQIISEVWRTSWEGTGRTLEVHVASLRSKL----GMPALIETVRGVGYRLVTPA 232


>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
           15897]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 57/221 (25%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++D+  +   +   L    F+       E+ +++ +    D  ++D+ +  + GFE
Sbjct: 4   KIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R      PV +L+  S  +DK+RG   G DDY++KPF+ +EL+AR++ I++R   
Sbjct: 64  LVEQMRQ-YREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           ++ +++  GD+  + D   V  Q   IHL  K++++   L+   N   T+E  +  ++  
Sbjct: 123 NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I ++R+ L +  G K  + TV G GY + 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKIE 221


>gi|196250488|ref|ZP_03149179.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|196209978|gb|EDY04746.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 220

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKVLLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + IL+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VDICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +     ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  +K ID  I  LRKKL +       I+TV G GY +
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKDD-----VIQTVRGVGYKI 218


>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
 gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
           [Raphidiopsis brookii D9]
          Length = 236

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D+  L   +  +L  E + V +T  G+ G EL +   +D +ILD  L +  G 
Sbjct: 1   MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    + PV  L+   +++D+V+GL +G DDY+ KPF   EL+AR+RA++RRS 
Sbjct: 61  EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +  GDL ++++ +    QG  I L+ KE Q+++ L       LT    + H
Sbjct: 121 VDSYTTTGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQH 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+ G   PE  +I   I  LR+K+    G    I TV+G+GY  
Sbjct: 181 LWKGEKPPESNVIAALIRLLRRKIE-LGGESTLIHTVYGKGYRF 223


>gi|52840952|ref|YP_094751.1| two component response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54293699|ref|YP_126114.1| hypothetical protein lpl0752 [Legionella pneumophila str. Lens]
 gi|52628063|gb|AAU26804.1| two component response regulator [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53753531|emb|CAH14986.1| hypothetical protein lpl0752 [Legionella pneumophila str. Lens]
 gi|307609509|emb|CBW99007.1| hypothetical protein LPW_07921 [Legionella pneumophila 130b]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED K  A  I        F+      G + I       +DA++LD+ L  + G+
Sbjct: 1   MRLLIVEDHKRTADFICKGFNEYQFHADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R  K   PV +LS    ++ +V+GL+ GA DY+ KPF+  EL+ARI++++RR  
Sbjct: 61  AVLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARIKSLLRRKP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL++NL   T      ++ LT KE+ ++  +  R    L++ +    ++D
Sbjct: 121 KENPILLKIDDLTLNLQKHTAIRGEKKLPLTAKEFMLLTFMLKRNGEVLSRTVIAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    IIDV I +LR+K+ N    K  I TV G GYVL 
Sbjct: 181 INFDTNTNIIDVAIKRLREKVDNDHPTK-LIHTVRGVGYVLE 221


>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
 gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
          Length = 232

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLLD-NSIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLMV 229


>gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter
           calcoaceticus RUH2202]
          Length = 220

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  G+L ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 226

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 111/224 (49%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDDK +A  IE  L  E F V V        E      F  +ILD+ L D  GFE+
Sbjct: 4   ILLVEDDKTIAMGIEYALTQEGFTVEVCHSAGYARERWGKGGFSLVILDVSLPDGNGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R     +  TPV  L+      + V GL  GADDYI+KPF   ELV+RI++++RR    
Sbjct: 64  CREF-GGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNKS 122

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I  G L +N     V   G  + LT  EY+++  L+  K  TLT+   L  L+D
Sbjct: 123 MPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLWD 182

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D      + V+I +LR+K+ +       I+TV G GY + E
Sbjct: 183 VAGDFVNDNTLTVYIKRLREKIEDDPQQPQIIKTVRGLGYKVGE 226


>gi|37526668|ref|NP_930012.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36786100|emb|CAE15152.1| two-component response regulator [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 234

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L++ ++       G++ +   + +  D I+LDL L    G  +
Sbjct: 10  VLIVEDEPKLGQLLVDYLQAADYETQWLLRGDEAVSHVQQHNPDIILLDLMLPGCDGITI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 70  CREIRRFS-DVPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCY-R 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++   DL ++        +   + LT  E+++++ ++ R     +++  LN+LYD  
Sbjct: 128 PQDIVKQSDLHIDEACFQARYRDKILDLTPVEFRLLKTMASRPGQVFSRDKLLNNLYDDH 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + ID  I  LR+KL      K +I +++G GY    +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDNSKTFIRSIYGLGYRWEAD 229


>gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15]
          Length = 219

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + ++ G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 239

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 7/235 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL+++D+  +   +E+ L+ ENF ++     G+  ++  K   +D I+LD+ L D+ GFE
Sbjct: 6   ILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+  +S  S+  DK+ GL  G DDYI+KPFN  E++ARI+AI+RR R 
Sbjct: 66  LCTEIR-KHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQRI 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    G LS + ++ T+ V+G  +  T KE +++       N   T      
Sbjct: 125 MENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            ++      E K + + I KLRKK+ +       I  + G GY      +   CE
Sbjct: 185 LVWGNDVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKFIPPNEALACE 239


>gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12]
 gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12]
          Length = 237

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 89/237 (37%), Positives = 137/237 (57%), Gaps = 2/237 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +++  L   NF + V   GEDG+     + +DA I+D+GL  + G 
Sbjct: 1   MRILLVEDDLELQKNLKQHLLDANFTLDVASDGEDGLFQGCEHNYDAGIIDVGLPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR  ++  P+ IL+   S +DKV GL +GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  ELITRLREQEVDFPILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G  S+N     V+  GH + L+  EY++ E   L      +K + + H+YD
Sbjct: 121 GKASPLVHNGPFSINTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK-DETCEYLETA 236
              + +  +I+VFI +LRKKL         IET+ G+GY L   A+ ++  E    A
Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPD-NQLGLIETLRGQGYRLIPLARCEQGTEDKPDA 236


>gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 230

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +    K   +   ++  GEDG++  +   FDA ++DL L  + G 
Sbjct: 7   MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  +R  K    + +LS   S+EDKVR L+SGADDY+ KPF   EL+AR+ AIVRR  
Sbjct: 67  SLIERIRKGKTPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVS 126

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+   + +  + ++L A   + +G RI L  +E+ ++ELL   +   LTK   L  L+
Sbjct: 127 REAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +P+  ++DV +C+LR KL +       I T+ G GYV R  
Sbjct: 187 DYSFDPQTNVVDVLVCRLRNKL-DRGFDTKLIHTLRGIGYVFRPE 230


>gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 221

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLEI-----PYIKTVKGIGYKIE 220


>gi|153940586|ref|YP_001390235.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936482|gb|ABS41980.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318329|gb|ADF98706.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 225

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 113/223 (50%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDDK +A  IE  L+ E F   +        +  K+ +FD  I DL L D  G+
Sbjct: 1   MNILLVEDDKIIASGIEYSLEQEGFTTILCYDVATAKKALKYNKFDLCIFDLSLPDGNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K   P+  L+      + V GL  GADDYI KPF   EL++RI++++RR +
Sbjct: 61  ELCKIVRE-KEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRYQ 119

Query: 121 GHAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S I+    D+ +N     V      I LT  EY+++ +L+  +   L++   L  +
Sbjct: 120 KGINSKIILELNDIRINTLDAKVYKNDKEIVLTALEYRLLLILANNQGQVLSRNQLLQGI 179

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   D      + V+I ++R+KL N       I+TV G GY 
Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLENDPQKPVIIKTVRGMGYK 222


>gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 223

 Score =  252 bits (646), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  + +++   L+SE + V   +  +D + L K   +D I+LD+ L D  GF 
Sbjct: 3   RILLVEDDPFIVNNLTEFLQSEGYIVSAVNGQKDALMLLKQEVYDIILLDISLKDGNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A++     TPV  ++        V GL  GADDYISKPF   EL++RI++++RR  G
Sbjct: 63  VCKAIKSMG-DTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRC-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             QS+I    + V+ +   V  QG+ I L+  EY+++ +    + T +++   L  ++D 
Sbjct: 121 KVQSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDI 180

Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D      + V++ +LR+K+ +       I+TV G GY 
Sbjct: 181 AGDFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYK 220


>gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
 gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
          Length = 220

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 123/220 (55%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK L+  +   L++E + V   + GE  +EL + Y    ++LD+ L D+ GF V
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVENGERAVELFERYGTRLVVLDINLPDMNGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR     TP+ I+S  +  EDK+ GL  GADDYI KP++ + L+A+I+ I +R    
Sbjct: 64  CSKLRE-NADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S++    +++NL  KT E+ G+ + L+ KE+ ++ LL   +   L KE   + ++   
Sbjct: 123 --SMLSASGVTLNLANKTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + E++ + V I +LR+KL +       + TVWG GY   
Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNAKRLLTVWGVGYKFV 220


>gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
 gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM
           30120]
          Length = 223

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED       ++  L+   F V V D G DG+       +  +ILD+ L  + G+
Sbjct: 1   MRILLIEDHLKTQGWVKNGLEEAGFLVDVADDGRDGLYFALENNYQLVILDIMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR AK + PV  L+   +++D+++GL+ GA+DY+ KPF+  EL+AR++  ++ ++
Sbjct: 61  EILKILRTAK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVNQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL ++L    VE  G +I LT +E+ ++    L  +  L + +  + ++ 
Sbjct: 120 P-VSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  IIDV I +LRKK+ +       IET+ G GY L
Sbjct: 179 IDFDSDTNIIDVAIRRLRKKI-DDEFEIKLIETIRGMGYRL 218


>gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium
           IMCC2047]
          Length = 227

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED+  L   +   L ++ +++     GE+G+     + +D  I+DLGL  + G 
Sbjct: 1   MRALIVEDEPQLQQQLADTLCAKGYSLDRAGDGEEGLYYGNEFNYDIAIIDLGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++R LR    S PV IL+   + +DKV GL++GADDY++KPF+ EEL+AR+ A++RR+ 
Sbjct: 61  ELIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S I  G L +++  + V  +  ++ LT  EY+++E L L     ++K     H+Y 
Sbjct: 121 GKADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL       N IET+ GRGY L
Sbjct: 181 QDYDRDSNVIEVFIGRLRKKLDPDNLH-NPIETLRGRGYRL 220


>gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
 gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136]
          Length = 246

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L+ E + V      E+ ++L    +++ ++LD+ + +I GF+
Sbjct: 23  RILVVDDEEDLCEILKFNLEMEGYTVDTAYSAEEALKL-DITQYNLLLLDVMMGEISGFK 81

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  K +   P+  ++   +  D + G   GADDYISKPF+  E++ R++A++RR+
Sbjct: 82  MARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRRT 141

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            G     +  +    L +N+  K V + G    LT KE++++ LL   +    ++E  L 
Sbjct: 142 AGVQIKEEEQLQYKGLVINIPQKKVTIDGEETSLTKKEFEILLLLLQNQGRVFSREDILA 201

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++       + IDV I +LRKK+ +      YI T  G GY   
Sbjct: 202 KVWNDEVYVLDRTIDVNITRLRKKIGSYG---KYIVTRLGYGYCFE 244


>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
           [Halanaerobium praevalens DSM 2228]
          Length = 225

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   I+  L  E + +     G+  + L K   FD IILDL L  I G E
Sbjct: 3   KILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIILDLMLPKISGEE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+  SS E K+ G   GADDY++KPF+  EL+ R++A++RRS+ 
Sbjct: 62  VCQNIRQIS-DIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRRSQN 120

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  G+  +  +   V        LT  E++++  L    N  L++E   + +
Sbjct: 121 VKKANVIALNKGEYKIFPEKMIVTKDDLDCELTTTEFKILMALINNANQVLSREQLADIV 180

Query: 179 YDGRDEPEVKIIDVFICKLRK--KLSNAAGGKNYIETVWGRGYVL 221
                    + ID  I  +RK  KL        YI TV+G GY  
Sbjct: 181 MGLEFSGFDRTIDAHIKNIRKKMKLEKD----QYIITVYGAGYKF 221


>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 231

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLID-NSIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  ++   +    L +N   +        + LTG E+ ++ LL+      +++E  
Sbjct: 121 SEQQQHDNSSPTLEVDCLRLNPGRQEASFDDVTLDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLMV 228


>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 233

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           RIL+++DD+A+A+ I   L+ E F + +   G + +E  +   E   +ILD+ +  + G 
Sbjct: 3   RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R  ++  P+  +S  S   D + GL+ GADDYI KPF  EELVAR++A +RR +
Sbjct: 63  ELCRRVR-DQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H        Q ++      +  +   V      I L+ +E+Q+ +         L++E 
Sbjct: 122 RHQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + ++      ++  + V I  LR+KL        YI+T+WG GY L +   +
Sbjct: 182 IFDAIWGENY-GDIGTVAVNIKNLRQKLDPDN---QYIKTIWGVGYKLVKPEGE 231


>gi|284008799|emb|CBA75548.1| two-component system, OmpR family, phosphate regulon response
           regulator [Arsenophonus nasoniae]
          Length = 230

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 7/226 (3%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +DD  L   +E  L  + F V  T   E    +        I+LDL L    G  + R L
Sbjct: 2   DDDMRLRSLLERYLTEQGFQVRSTANAEQMDRILTRESIHLIVLDLMLPGEDGLSICRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------S 119
           R      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA++RR       +
Sbjct: 62  RSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANELPGA 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +++I  G   +NL  + +      + LT  E+ ++++L       L+++  ++   
Sbjct: 122 PAQDEAVIRFGKFKLNLGTREMFQDDESMPLTSGEFAVLKVLVSYPREPLSRDKLMSLAR 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   + IDV I +LR+ + +      YI+TVWG GYV   + 
Sbjct: 182 GREYSAMERSIDVQISRLRRMIEDDPTHPRYIQTVWGLGYVFVPDG 227


>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
 gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. Tu6071]
          Length = 265

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR   
Sbjct: 98  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 156

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                        A   +  GDL V+ +   V   G RI LT  E +++   S    T L
Sbjct: 157 AGGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 216

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 217 SRDRLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 264


>gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065]
          Length = 227

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+E ++ ++  IE+ L  E + V +   G + +E  +  E+  I+LD+ +  + G E
Sbjct: 5   KILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMIPGLNGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  S + DKV GL  GA+DY++KPF  EEL+ARIR   R    
Sbjct: 65  VCRRIRQFSC-VPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKLV 123

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +   ++ ++     V   G  I LT KEY ++E L + KN  LT+E  +  ++ 
Sbjct: 124 KSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +  ++DVFI  LR K+ N +  K  I T+ G GYV+++
Sbjct: 184 YDYVGDTNVVDVFIRYLRSKIDNDSKEK-LITTIRGVGYVIKD 225


>gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 227

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  L  ++ + L++ +++V     G   + L   ++ D ++LDLGL D+ G +
Sbjct: 3   RVLVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGLPDMDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ALR      PV +LS   + E+KV  L +GADDY++KPF+ +EL+AR+RA VRR+  
Sbjct: 63  VIKALRGWTP-VPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRRTEA 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L+ T D +V+L AK     G  +HLT  E+ ++E+L       +T+   L  
Sbjct: 122 GPTAPETTLVKTDDFTVDLTAKKAHRDGRDVHLTPTEWHLLEILVTNPGRLVTQRHLLQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +   + V++ +LR+KL        Y+ T  G GY   E
Sbjct: 182 VWGASQSNKTNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFEE 227


>gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 219

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TP+  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
 gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
          Length = 223

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  +   +   L+   + + +   G + I L     FD I+LD+ L  I GF 
Sbjct: 3   HILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLPKIDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   +R      P+ +L+ ++  E+++RGL    DDYI+KPF+   LV +I A++RRS  
Sbjct: 63  VCELIRKQS-QVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSSM 121

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   I   +L +++D+ T  V G    LT +E++++  L L +   LT++  L+ L
Sbjct: 122 IPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREFEVLRELLLNQGRVLTRQNLLDKL 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + +++D  I  LRKKL        +I+T+ G GY + + 
Sbjct: 182 WKYDFYGDERVVDTHIKNLRKKLGID-----FIQTIRGVGYKIDKE 222


>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 240

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  +   ++  L +E ++V +   G D +   +   + A  +D+ L  + GF
Sbjct: 1   MKLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R +  + P+ +L+   +IED+V GL SGADDY++KPF   EL AR+RA++RR  
Sbjct: 61  ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I+ G L+++       V GH + L+ +E+ ++ L +   + TL++   L  ++ 
Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +     +ID ++  LRKKL + AG    I T  GRGY L
Sbjct: 181 TTENIGTNVIDQYVSYLRKKL-DVAGAGLSIVTERGRGYRL 220


>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 229

 Score =  252 bits (646), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+ + L +    D I+LD  + ++ G E+
Sbjct: 8   VLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEI 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    S P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   D+ ++ +   V    H + L   E++++     +     ++E  L+ ++
Sbjct: 128 PATVGMRLEFDDIILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGDDPVRTVRGAGYAL 228


>gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
 gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L S  F  +  +  +           + ++LD+ L    G ++
Sbjct: 2   IYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+  +     P+ +++   +  +KV+ L  GADDY++KPF   ELV+R+RA++RRS 
Sbjct: 62  LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRSS 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ      ++  G +S+NL    V V G  + LT KEYQ++E L  +     +++  L
Sbjct: 122 RSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++      E + +DV I  LRKKL  AA    YI+TV G GY 
Sbjct: 182 DSIWGYSFHGETRTVDVHIRTLRKKLGEAA---KYIKTVRGVGYK 223


>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
           J2-064]
          Length = 220

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++DD+ +   +   L++E F V     G +  +  +  +    ++D+ + ++ G
Sbjct: 1   MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE+ + +R +    PV +L+   ++ DK RG + G DDY++KPF  EEL+ RIRA++RRS
Sbjct: 61  FELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++  I  G+++++  +  +++      +  KE++++  L+       T+E  +  ++
Sbjct: 121 NQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +   + +DV I +LR        G   I TV G GY 
Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIR-IVTVRGVGYK 220


>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
 gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
           [Clostridium difficile]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DDK L   I+  + SE+      + G++G++  K  E+  +ILD+ +  + GFE
Sbjct: 3   KVLIIDDDKELCALIKRSVLSEDIEADFCNTGKEGLQKLKEREYQLVILDIMMPGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R    S P+ + +  +    KVRGL++GADDY++KPF+ +EL+ARI +++RR   
Sbjct: 63  TLEEIRKEN-SLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRRYTR 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             Q       +    L ++++ ++V  +     L  KE+ ++   +  +   LTK+    
Sbjct: 122 FNQQDGISQQLEFDGLKIDIENRSVTTENGTFELPPKEFDLLLYCAKNQGKILTKQQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      +   I   I +LRKKL    G   YI+T+ G GY   +  
Sbjct: 182 EVWREEYFYDDSNIMAIISRLRKKLEVNPGSPKYIQTIKGIGYRFNKEV 230


>gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1]
 gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1]
          Length = 208

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/201 (35%), Positives = 119/201 (59%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ L + +   L +E+++V     GED ++      +D I+LD+ +  I G 
Sbjct: 1   MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    +TPV +L+   +I+D+V+GL  GADDY+ KPF  +EL+ARIR ++RR  
Sbjct: 61  QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  ++    DL V+ +   V      I L+ KE+ ++E +   K   LT++    H+++
Sbjct: 121 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKL 201
              E    IIDV++  LRKKL
Sbjct: 181 YDYEGGSNIIDVYVRYLRKKL 201


>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 228

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 224

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 121/220 (55%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+  ++ + LK+  + V     G   +++ +    D +ILDLGL DI G  V
Sbjct: 4   VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L  LR    ++PV +LS     +DKV  L +GADDY++KPF  +E +AR+RA VRR+   
Sbjct: 64  LSKLREF-CASPVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRRTGLV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A + +VT    VN +A+TV   G  + LT  E++++++L    +  ++++  L+ ++  
Sbjct: 123 DAPAPVVTDAFEVNFEARTVTRDGKPVRLTPTEWKIVDVLVRNADRLVSQQTLLHEVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + V++ +LR+KL        Y  T  G GY  
Sbjct: 183 SYSRETNYLRVYLAQLRRKLEPDPAHPRYFVTEPGMGYRF 222


>gi|170692767|ref|ZP_02883929.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
 gi|170142423|gb|EDT10589.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia graminis C4D1M]
          Length = 234

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 2/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G  L   +++D I+LD+ L    GF
Sbjct: 1   MKLLIVEDEHKVVDYLRSGLTEQGWVVDVALDGEEGTYLATEFDYDVIVLDVMLPKRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K      ++D
Sbjct: 120 SQESTLISVGDLFVDLIGRRATRDGVRLDLTAKEFQLLSVLARRQGDILSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
              +    +++  I +LR KL +       + TV G GYVL      E  E  E +
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPSKLLHTVRGMGYVLEVREARELHEDGEPS 234


>gi|255527737|ref|ZP_05394592.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296187215|ref|ZP_06855612.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296187220|ref|ZP_06855617.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255508577|gb|EET84962.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296048250|gb|EFG87687.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|296048255|gb|EFG87692.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 115/224 (51%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL++ED++ +   I  +L +++  VY    G   +E+   Y FD ++LD+ + DI G+
Sbjct: 4   IRILIVEDEEPIRKLIYKILSTQDMLVYQAQNGSQALEMINKYSFDLVLLDILMDDISGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V R +R   +  P+  LSG    ED ++GL  GAD YI+KPF+   L A++++ ++R  
Sbjct: 64  DVAREIRKHNLQLPIIFLSGKKDDEDIIKGLDIGADSYITKPFSPSVLSAQVKSKIKRRK 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    ++IV      +L+          + L+ KE ++++      N   +KE   
Sbjct: 124 EILHENTDSNIIVHFPFKYDLNTYKFYKNDIELKLSSKETKLMKFFMEHPNQVFSKEQLY 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++ G +  +   I V+I  LR K+ +      +I+TVWG GY
Sbjct: 184 QSVWQGNN-SDDNSIMVYIKYLRNKIEDIPRKPKHIKTVWGIGY 226


>gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 224

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 122/226 (53%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +AH ++L L    + V     G  G+   +    D +ILDLGL D+ G E
Sbjct: 3   RILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+   ++E KV  L  GADDYI KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIRA-GYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  I  G L V+L  + V  +G  + L+ KE++++ LL  R     +++    HL+  
Sbjct: 122 GEQ--ISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + E +  ++DV I  LR KL  A G   Y+ TV G GY LR+   +
Sbjct: 180 QLERDSNVVDVHIANLRAKLREA-GAYGYLRTVRGVGYALRQREAE 224


>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 255

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/244 (29%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDDK +   +   L+   F+V V + G  G  L   Y+ D I+LDL L ++ 
Sbjct: 1   MKPCILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVD 60

Query: 59  GFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  +   S P+ +++ + + +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALL 120

Query: 117 RRSRGHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR+            ++  G +++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRTNRAPLGSTGHPEILSYGPMTLVPERFEAIWFECPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             + L  ++    + +++ I V +  LR KL        +I+TV+G GY L     ++  
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLELPKGEQIK 240

Query: 231 EYLE 234
           ++ E
Sbjct: 241 QFRE 244


>gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 301]
 gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a
           str. 2457T]
 gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 301]
 gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri
           2a str. 2457T]
 gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family
           precursor [Shigella flexneri 2002017]
 gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str.
           2457T]
 gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6]
 gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272]
 gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304]
 gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ECD227]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DA+ILDL L  I G 
Sbjct: 11  MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 71  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 191 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 228


>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 228

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D+ ++ +++   LK E F V     GED +E  + +  D +ILD+ +  + G+E
Sbjct: 4   RILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLGGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L  ++    + +L+  + I DKV GL+ GADD++SKPF+  EL+ARI+A+VRR   
Sbjct: 64  VCRRL-ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     + ++ G L V   ++T E+    + LT KE+ ++ LL        T++  L 
Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++        + +D+ I +LRKKL      ++ ++TV+G GY 
Sbjct: 183 QVWGIDYVGGTRTVDIHIQRLRKKLEP---HQSMLQTVYGIGYK 223


>gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 238

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L   I+ ML  EN+ V     G       +    E+   I D  L  I 
Sbjct: 1   MRLLLVEDEPDLGAIIQRMLNRENYLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLPKIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR    S PV IL+  S I+D V GL +GADDY+ KPF K EL+ARIRA+ RR
Sbjct: 61  GLELCQRLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +     S +  G L+++    +V           I LT  E++++E      N TLT++ 
Sbjct: 121 ALHIQPSQLQIGPLTLDYAKSSVFTSNSQGKPQTIPLTANEFRLLEYFMKHPNQTLTRDQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L++  D P   ++   I  LR+KL++  G K+ IETV G GY L
Sbjct: 181 LLAQLWETDDAPISNVVSARIRLLRRKLADY-GCKDLIETVHGFGYRL 227


>gi|300694206|ref|YP_003750179.1| transcriptional regulatory protein ompr [Ralstonia solanacearum
           PSI07]
 gi|299076243|emb|CBJ35557.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           PSI07]
          Length = 245

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 6/240 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+    H + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFSFGPFKLNFRMRTLFRGDHALSISDTEFALLKLLITHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             +Y        + IDV + +LR+ L   A    YI+TV GRGY    + +D   E    
Sbjct: 185 ELMYGPGSSVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERDPHDEVQSP 244


>gi|288919562|ref|ZP_06413892.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
 gi|288349068|gb|EFC83315.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EUN1f]
          Length = 243

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 15/225 (6%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             S+E  L+ E + V     G D ++L    + D ++LD+ +  + G E  R LR     
Sbjct: 13  RESLERSLRFEGYEVRTAADGVDALDLVGREQLDIVVLDVMMPRMDGLETCRRLRGRGND 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------------- 118
            PV +L+   ++ D+V GL  GADDY+ KPF  EEL AR+RA++RR              
Sbjct: 73  VPVLMLTARDALADRVSGLDVGADDYLVKPFALEELFARLRALIRRATLTTRGAAGQGQA 132

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S ++  D+ ++  ++ V      + LT  E++++EL        L++   +  +
Sbjct: 133 ADRDGASALLYSDVRLDPVSRQVLRGPRELTLTKTEFELLELFLSHPRQVLSRSTIMEKV 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +     P    ++VF+  LR+KL    G    + TV G GYVLRE
Sbjct: 193 WGYDFGPSSNSLEVFVSYLRRKLEAD-GEPRLLHTVRGVGYVLRE 236


>gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L ++SE +         +         +  ++LDLGL D  G 
Sbjct: 1   MKVLVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSHYSLMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L  +R  K S PV IL+   ++ D++ GL +GADDY+ KPF  EEL AR+RA++RR  
Sbjct: 61  DFLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G++ +N+  + V ++  ++ LT KEY ++  L  +  + + +E+  N +Y 
Sbjct: 121 NQGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +EP    ++V I  LR K+     GK+ I TV G GY+L ++   E
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKI-----GKSRIRTVRGFGYMLVKSGDVE 223


>gi|296103743|ref|YP_003613889.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295058202|gb|ADF62940.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 240

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 113/226 (50%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPSLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  ++  +  L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01]
 gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01]
          Length = 234

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 114/233 (48%), Gaps = 15/233 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGFEV 62
           ++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G +V
Sbjct: 1   MVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGIQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR    
Sbjct: 61  AKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMME 120

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTK 171
            +            I T  L ++ + + V      +  LT KE+ ++  ++ +     ++
Sbjct: 121 EEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  L  ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 181 DQLLELVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 231


>gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii
           ATCC 35469]
 gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia fergusonii ATCC 35469]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DAIILDL L  I G 
Sbjct: 1   MRILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218


>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 243

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  L   + + L++E   V   + G   +E  +    DA++LD+ +  + G+E 
Sbjct: 13  ILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKVREDMPDAVLLDIMMPGLDGYET 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR    S PV  L+     +D++RGL+ GADDYI KPF+  ELV+R+RA++RR    
Sbjct: 73  LRRLREFS-SIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRRHYVT 131

Query: 123 AQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + T      L+V+ D + V V G RI L   EY+++  L       +  E  L  +
Sbjct: 132 PTQAVSTTKIDDRLTVDFDRREVLVNGERISLRPTEYRLLYHLVQNAGFVMPHETLLAKV 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + +++  LR+K+       +YI T  G GY   +
Sbjct: 192 WGPEYRDESHYLRLYVTYLRQKIEEDPANPHYILTERGVGYRFVD 236


>gi|56418866|ref|YP_146184.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
 gi|56378708|dbj|BAD74616.1| transcriptional regulator [Geobacillus kaustophilus HTA426]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ILL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKILLAEDDLHLGELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             +   LR    +  + +L+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VNICSRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +     ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEEKVTFHGFTLNRTSHTLHRGDEEIFLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +  +K ID  I  LRKKL +       I+TV G GY + ++
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKDD-----VIQTVRGVGYKIDKS 221


>gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035]
 gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E  +V +   G D +       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ + S++++V GL +GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L ++L A+ V  +G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +       I+TV G GY +
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFTTELIKTVRGAGYRI 221


>gi|172058932|ref|YP_001815392.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991453|gb|ACB62375.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 119/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDDK LA  + L L+   + V V   G + IE C+ + +D ++LD  +    G 
Sbjct: 1   MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR  +    + +L+   +  D V GL SGADDY+ KPF   EL+AR+RA+ RR +
Sbjct: 61  EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   +L +++  +T+   G  + LT +E++ + LL  R    + +E+ +  ++ 
Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     +D  +  +RKKL +AAG    I+TV G GY L
Sbjct: 181 IGADITDNALDALVRLVRKKL-DAAGAPALIQTVRGFGYRL 220


>gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1]
          Length = 255

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L+++  +     LG   ++  +    D +ILD+GL DI GFE
Sbjct: 32  HILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGLPDISGFE 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R   
Sbjct: 92  TCRQLRRF-TEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 150

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A++   T    ++     +  +   + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 151 RAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDALGVA 210

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   AG    I+T  G GY
Sbjct: 211 SDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 248


>gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F++     G  G+   +   +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRRWREAGHAEPVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY 
Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A+ + +   L+   + VY    G +GIE  +  + D ++LDL L  I GF V
Sbjct: 5   ILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLMLPKIDGFAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              LR     TP+ +L+       +++G    ADDYI KPF+   ++ RI A++RR+   
Sbjct: 65  CEILRKES-RTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTEQG 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S+I   +++++ +   V V    + LT +E+++++LL        ++E  L+ ++
Sbjct: 124 TEEEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + KI++  I  +RKKL        YIET+ G GY + + 
Sbjct: 184 GYEYYGDQKIVNTHIKNIRKKLGVD-----YIETIRGVGYKIEKE 223


>gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728]
          Length = 240

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD+ + + +    + E F N+     G + +        + I+LD+ L D  GF
Sbjct: 7   KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R +  + P+  L+  ++  DK++G   G DDYI+KPFN  E+VAR++A ++R+ 
Sbjct: 67  TLCSKIR-SHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRTT 125

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             + S             ++ +   + V G RI    +E +++       N  L+K    
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++          + V + +LR+KL        +I+TV G+GY+      DE
Sbjct: 186 KDVWG-EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFEAEPIDE 237


>gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
 gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
 gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
 gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
 gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB
 gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB
 gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           D23580]
 gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
 gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|311278928|ref|YP_003941159.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
 gi|308748123|gb|ADO47875.1| two component transcriptional regulator, winged helix family
           [Enterobacter cloacae SCF1]
          Length = 240

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L + N+   +   G+  +          I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLLAANYAPTLISHGDKVLPYVHQSPPALILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR R 
Sbjct: 72  LCREIRRFS-DVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H   Q++     L V+        +   + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 HRELQAMDAESPLIVDESRFQASWRNKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWEADA 236


>gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8]
 gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62
           L++EDD  +   +E   + E++ V   + GE  ++  K   + D ++LD+ L +  GFEV
Sbjct: 12  LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   +    S PV +++     E K++G   GADDYI+KPFN EEL AR++AI++R+   
Sbjct: 72  LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPP 131

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A++ +     GD+ VN         G  ++ T  E+ ++  L   K  T+T++  L  ++
Sbjct: 132 AEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    + ID  +  +RKK+        YIETV+G GY   E 
Sbjct: 192 GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDEE 236


>gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
 gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC
           51170]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 4/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDDKA+ + +   LK +N+ V   + G + +E  K    D +ILD+ L +  G E+
Sbjct: 2   IYVVEDDKAIRNLVLYALKEKNYQVRGFEDGLNVVESLKNENVDLLILDIMLPEKDGIEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ +L+  +   DKV GL+SGADDYI+KPF+  EL++RI+A++RRS   
Sbjct: 62  LKEVREFS-DIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSEKK 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   ++ VN+  +T ++ G +I LT KE++M+ L        +T+E FL  ++   
Sbjct: 121 DGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWGYD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            E E + +DV I  LR KL +A     +I+TV   GY L E
Sbjct: 181 YEGETRTVDVHIASLRNKLKSAG---IHIKTVRNLGYKLGE 218


>gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
 gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator,
           winged helix family [Dickeya dadantii Ech703]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD +    ++  L    + V +   G +G+     + +DAIILD+ L  + G+
Sbjct: 1   MRILVVEDDVSTGDYLKKGLTEAGYAVDLARSGTEGLFNALEHGYDAIILDVMLPGLSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   PV  L+    + D++RGL+ GADDY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QLIEMLR-KKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV + +LR K+ +       I TV G GYV    A
Sbjct: 180 MNFDSDTNVVDVAVKRLRAKI-DKPFDIKLIHTVRGIGYVCEPRA 223


>gi|332974949|gb|EGK11861.1| two component response regulator IrlR [Psychrobacter sp.
           1501(2011)]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L   I+  L    F V     G DG        ++ II+D+ L DI GF
Sbjct: 1   MKILLVEDEVTLGEYIKKGLTEAGFLVDHKLNGLDGYHALMSETYNVIIMDVMLPDISGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    +ED+++G++ G DDY++KPF   ELV RI+ ++RR+ 
Sbjct: 61  ELVKNYRAAGHITPVLFLTAKDDLEDRIKGIEIGGDDYLTKPFAFAELVVRIKNLLRRAN 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   DL+++L  +TV   G  I LT KE+ +++ +  R+   L + +  + +
Sbjct: 121 QSEYLNTQLKIADLTLDLAKRTVHRGGVSIQLTSKEFALLQFMLEREGEVLPRSVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   + +  +IDV I +LR K+ +       I TV G GY L
Sbjct: 181 WDMNFDSDTNVIDVAIRRLRVKI-DEGFDLKLIHTVRGMGYKL 222


>gi|170720861|ref|YP_001748549.1| two component heavy metal response transcriptional regulator
           [Pseudomonas putida W619]
 gi|169758864|gb|ACA72180.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas putida W619]
          Length = 226

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   GE G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQARTGQYLSQGLSEAGFATELVADGETGQHLALSGDHDLLILDVMLPGRDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+A+R A + TPV  L+   ++ED+VRGL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQAVRQAGLDTPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLD-AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   +           +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 SPSQETQLALADLRLDLFRRRAERAGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ +       I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDPHRNKLIHTVRGMGYVLEE 223


>gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+ ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR++A++RR+
Sbjct: 64  LCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     +++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 RPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMQDVIRTVRGAGYSME 226


>gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium
           HTCC2654]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A  I      E  +V     G   +       +D +++D  L ++ G 
Sbjct: 1   MKILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRMLPELDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ALR A+++TP   L+ +  +ED++ GL++G DDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A ++ +  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L +++
Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +++  I +LR K+ +       I TV G GY + +
Sbjct: 181 DIHFDPGTNVVETHISRLRAKV-DKPFDHELIRTVRGAGYRIDD 223


>gi|302381998|ref|YP_003817821.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302192626|gb|ADL00198.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD   A ++   L      V     G  G+   +  E+D  ++D  +  + G 
Sbjct: 1   MKILVVEDDAEAAQAMVRGLTEGGHTVSHAIDGAYGLLEAQKGEYDVYVVDRMMPRLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            ++  LR     TPV  LS M  +ED+V GL++G DDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  GMVETLRKDGDQTPVLFLSAMGEVEDRVVGLKAGGDDYLVKPYAFAELIARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV      I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGTSEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+ +    +  ++TV G GY L 
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLE 222


>gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
 gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968]
 gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Legionella longbeachae NSW150]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L    + V     GE      K   F+ IILDLGL  + G  +L+++R     
Sbjct: 13  GDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGLPKLSGLALLQSIRNDGNP 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV IL+   S+ED+V+GL SGADDY+ KPF+  EL ARIRA+VRRS+G A +++   ++
Sbjct: 73  TPVIILTARESVEDRVKGLDSGADDYLVKPFDLNELSARIRALVRRSQGRADAVLQYRNI 132

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           +++  A +V V    +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V
Sbjct: 133 TLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYGWEEDVDSNALEV 192

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            I  LRKKL       N+I T+ G GY+  +N
Sbjct: 193 HIHNLRKKL-----NANFIRTIRGVGYMAEKN 219


>gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  LA ++  +++ ++++  +   G DG+      E+D I+LD+ L    GF
Sbjct: 1   MNILIVEDEVRLADALGQIMEEQHYHTDIVYTGTDGLYCGLSGEYDVIVLDVMLPGENGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+R LR A + TPV +L+    I DKV GL  GADDY++KPF  EEL+AR+RA+ RR  
Sbjct: 61  DVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYMTKPFVPEELLARVRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL    +      IHL  KE+++++LL       ++K+  ++ ++ 
Sbjct: 121 EVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLKLLMNNAGKIISKDTLISRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   ++ +I  LRKKL         I TV   GY L E +
Sbjct: 181 NDSDAEDNNVEAYISFLRKKLFFLNSRVE-IVTVRKVGYRLEEPS 224


>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +R   +    +    + V+  ++TV V    I+LT  E++++  L   +   LT+E  ++
Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 KIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+ +   IE+ LK+E +NV     G + ++  +  E   IILD+ + ++ G   
Sbjct: 6   VLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIMMPNMDGITA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + + P+ +LS  +   DK+ GL  GADDY++KPF+  EL+AR+++ +RR    
Sbjct: 66  TFKIRAER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +    L ++ DAK + ++G  + LT  EY++ ELL        +       
Sbjct: 125 GTYSEGATKVEIDGLILDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+ V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLCHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1]
 gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1]
          Length = 218

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD + A SI+  L+ + + V   D G+  I   K +++D I+LD GL    G 
Sbjct: 1   MRILIAEDDISQAESIKSWLELDGYVVDWVDRGDYAIAAIKQHDYDCILLDRGLPKSSGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR  +  TPV +++   SI D+V GL  GA+DY+ KPF+ EEL ARIR+ +R  +
Sbjct: 61  QVLLTLRKHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHIRSMQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+   ++ +N   K V++ G  + LT KE++++  +       +T+E   + LY 
Sbjct: 121 QQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLESTLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+VFI +LRKK+        YI+T+ G GY + E
Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGTN-----YIKTIRGLGYRMSE 218


>gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|298345536|ref|YP_003718223.1| response regulator [Mobiluncus curtisii ATCC 43063]
 gi|298235597|gb|ADI66729.1| response regulator [Mobiluncus curtisii ATCC 43063]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 116/220 (52%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+AL+  I ++L+S  +       G   ++  +  E D ++LDL L  + G E
Sbjct: 4   KILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+  S   D V GL++GADDYI KPF  +EL+AR+ A +R    
Sbjct: 64  ICRRIREFS-NVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLRNLDA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    + +NL +  V   G  ++LT  EY ++  L+ +     ++E  L  ++  
Sbjct: 123 AEHDVLKAAGVEINLASHEVSRGGKPLNLTPLEYDLLVALATKPGRVFSREELLEQVWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R   + ++++V + +LR K+         + TV G GY +
Sbjct: 183 RHASDTRLVNVHVQRLRAKVELDPDNPTVVLTVRGVGYRI 222


>gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
 gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina
           MBIC11017]
          Length = 253

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 9/239 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   ++V     G  G  L      D IILDL L  + GF 
Sbjct: 4   RILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKVDGFT 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + LR  +     P+ +L+ +S  +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 64  ICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 123

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +   V      I LT  E++++  L  R   T++    
Sbjct: 124 DRIPQAARHSEILSYGPLTLVPERFEVLWVDKVIKLTRLEFELLHCLLQRHGQTVSPSEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKDETCE 231
           L  ++      +++ I V +  LR KL        YI+TV+G GY L     A+ E  E
Sbjct: 184 LQEVWGYDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLELPHTAEAENAE 242


>gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
 gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila
           L48]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +  +I+V + +LR+KL    G K  I+TV G GY+  E
Sbjct: 181 DDEERDPNVIEVLVGRLRRKLEGDNGFKP-IDTVRGLGYLFTE 222


>gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM]
 gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM]
          Length = 224

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK     +   L+ E   V + + G + +      E+D +I+D  L  + G 
Sbjct: 2   MKILVVEDDKTTGAYVAGGLREEGHVVDLIENGREALLQASGTEYDVLIIDRMLPGLDGM 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR AK  TPV  L+ +  ++D++ GL +G DDY+ KPF   EL AR+ A+ RR R
Sbjct: 62  ALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPR 121

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL ++L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 122 ATQEETILRAGDLEMDLMHRKVTRAGQVIDLLPREFALLEQLLRRKGRVQTRTMLLEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+ +       IETV G GY +
Sbjct: 182 DISFDPQTNVVETHISRLRAKV-DKPFETELIETVRGSGYRI 222


>gi|259503740|ref|ZP_05746642.1| response regulator [Lactobacillus antri DSM 16041]
 gi|259168303|gb|EEW52798.1| response regulator [Lactobacillus antri DSM 16041]
          Length = 234

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 16/235 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGFEV 62
           +IED+ ++   + + LK + +       G +  E        +D I+LDL L    G +V
Sbjct: 1   MIEDNHSVCEMMAMFLKKQGWQYEFAYDGIEAEEKFTAAPDKWDVILLDLNLPKKDGMQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RRS+  
Sbjct: 61  AADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSAITLIARIKALYRRSQLS 120

Query: 123 AQSLIVTG-----------DLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTTLT 170
                  G           +  +N   + V +    I  LT KE+ +++ L+ +     T
Sbjct: 121 KHPEDQDGTAARDFDVQTKNFRMNTKTREVYLYDQPIADLTPKEFDLLKTLASKPRQVFT 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E  L  ++D     + + +D  I KLR+KL +   G   I+TVWG GY   + A
Sbjct: 181 REQLLQLVWDYEYYGDERTVDAHIKKLRQKLEDL--GPQVIKTVWGVGYKFDDEA 233


>gi|239927334|ref|ZP_04684287.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 226

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V V   G  G+ + +  E+  ++LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDVAHDGRQGLWMARTGEYALVVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    + P+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRREGNAVPILVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TAAPPVLAVGDLSLDVAGRVCRRAGVRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  +  +++  +  LRKK+ +AA  +  ++TV G GY L ++
Sbjct: 181 -DEAQDPNLVEARVSALRKKV-DAAFHRKSLQTVRGTGYRLVDD 222


>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 231

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +I++ L+ E   V+    G + +EL    +   I+LD+ +  + G + 
Sbjct: 4   VLVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEKIHLIVLDIMMPRMDGIKT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R  + + P+ +LS      DK+ GL  GADDYI+KPFN  ELVAR+++ +RR +  
Sbjct: 64  CLKIREKR-NLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRRYQKP 122

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G +  +I   DL +N   KT+ ++G  + +T  E+++++LL+       + +    
Sbjct: 123 LELEGESPDIIEVRDLIINNKEKTIFLRGEDVKVTATEFKILQLLASNLGRVFSIKEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++         + V I ++R+K+        YI+ VWG GY + 
Sbjct: 183 KVWEEPFYRSENTVTVHIRRIREKIEINTKDPEYIKVVWGVGYKIE 228


>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
 gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
           CCY9414]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +LK E ++V +   G  G E      +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLPGKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR    +TPV  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR+ 
Sbjct: 61  EICQELRRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAG 120

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       +   DL ++ + +    QG  I L+ KE Q+++         LT    L 
Sbjct: 121 SPSHETTTGRLTVADLELDSENQVAYRQGRIIELSQKESQLLQYFMENTGHLLTHAQILQ 180

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +L+    E P   +I   I  LR+K+         I TV+G+GY  
Sbjct: 181 NLWQQDHEQPNSNVIAALIRLLRRKIE-VGKETPLIHTVYGKGYRF 225


>gi|58584853|ref|YP_198426.1| response regulator [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
 gi|58419169|gb|AAW71184.1| Response regulator consisting of a CheY-like receiver domain and
           wHTH-type DNA-binding domain [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 256

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 123/233 (52%), Positives = 165/233 (70%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED-GIELCKFY--EFDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D    +       +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDHYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFL+
Sbjct: 121 RRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLD 180

Query: 177 HLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP    I+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   +E
Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYVDEE 233


>gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS]
 gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
 gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+ +   IE+ LK+E ++V     G D ++  +  E   IILD+ + ++ G   
Sbjct: 6   VLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIMMPNMDGITA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R  + + P+ +LS  +   DK+ GL  GADDY++KPF+  EL+AR+++ +RR    
Sbjct: 66  TFKIREER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQL 124

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +    L ++ +AK V ++G  + LT  EY++ ELL        +       
Sbjct: 125 GTYSEGATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++        I+ V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 VWNEEAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGVGYKMEK 230


>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  + D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|116696499|ref|YP_842075.1| response regulator [Ralstonia eutropha H16]
 gi|113530998|emb|CAJ97345.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 237

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 10/225 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+LL+EDD  +  S++L L+ E F V     G+ G+      +     +D I+LDLGL 
Sbjct: 1   MRVLLVEDDAMIGDSVKLALRQEGFTVDWVRDGDAGLAAASTAQHGQACYDLILLDLGLP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
             PG +VLR LR   + TPV IL+   ++ D+V GL +GADDY+ KPF+ +EL AR+ A+
Sbjct: 61  RRPGLDVLRTLRARGVPTPVLILTARDAVADRVAGLNAGADDYLVKPFDLQELAARMHAL 120

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            RR+ G A+ L+  GD+ +N   +    +G  + L+ +E+ ++  L  R     +     
Sbjct: 121 ARRAAGRAEPLVSYGDIVLNPTTREATHRGEPVRLSAREFALLAALMARPGKVWSVPQLQ 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             LY   DE     ++V+I  LRKK   A      I  + G GYV
Sbjct: 181 ERLYGWDDEVGSNTVEVYIHALRKKFGAA-----LIRNIRGVGYV 220


>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
 gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +   ++    + V+  ++TV V    I+LT  E++++          LT+E  ++
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I  +LK++ F+V+    G D ++     + D  +LD+ +  + G+E
Sbjct: 3   KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+ +L+  S +  KV+G + GADDY++KPF  +EL+ RI+A++RR + 
Sbjct: 63  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   I  G+L+++    TV        +  KE++++ +L      TL++   +  ++  
Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR++  +       I T+ G GY L 
Sbjct: 183 DFEGNERTLDVHINRLRERFPSHVYKFK-ITTIRGLGYRLE 222


>gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
           301020]
 gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L +    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  ++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
 gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
           Ellin185]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A ++ + LK+   +V     G D +  C     D ++LDLGL D+ G +
Sbjct: 4   RVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLDGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           VLR LR +  S PV +LS     +DKV  L  GADDY++KPF  EEL+AR+RA +RR  +
Sbjct: 64  VLRQLRQSS-SVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRRGGA 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +VT D S++            +HLT  E++++  L+  +   +  E  L  ++
Sbjct: 123 EPSGPAPVVTADFSLDFTTYEASGPTGAVHLTPTEWRLLAELARHRGRVVPHEQLLRAVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   E   + V+  +LR+KL        +I T  G GYVLR
Sbjct: 183 GPQYGRESNYLRVYCGQLRRKLEPEPSLPRWIVTEPGIGYVLR 225


>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
 gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
          Length = 242

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 13/239 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD  +   + ++L  E +++   + G   +E+ +  E D +ILD+ +  + G  V
Sbjct: 6   ILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFR-PEVDLVILDIMMPGMSGLRV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              LR    + P+  L+  S   DK+ GL +G DDY+ KPF+  EL AR++A++RR    
Sbjct: 65  CEELRKLS-TVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRRYCVY 123

Query: 120 --RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +G A +      + +  + + LD   V V G  I LT  EY+++ LL          +
Sbjct: 124 QGKGQAPARAENLTLCSHGVKLALDCNRVWVDGEEIDLTETEYKILRLLMQSPQRIFPVQ 183

Query: 173 MFLNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           +    ++           + V I  LR K+         ++T+WG+GY      + +  
Sbjct: 184 VIYEDVWQEPYFYTSNGTVMVHIRNLRMKIEKDPQNPARLQTMWGKGYRFVPGEEKDHA 242


>gi|212709975|ref|ZP_03318103.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
 gi|212687384|gb|EEB46912.1| hypothetical protein PROVALCAL_01026 [Providencia alcalifaciens DSM
           30120]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   +++ L    F +     G+ G +      +DA++LDL L  I G 
Sbjct: 6   MRILLIEDDRLIGDGLKVGLTQLGFTLDWFMDGKQGQQALFDAPYDAVVLDLSLPHIDGM 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R      PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 66  DILKFWRKQGRDEPVLILTARDALEQRVNGLQQGADDYLCKPFALAEVAARLQALIRRRS 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +V GD+ ++  A TV  QG  + L GKE  ++ L        L++      LY+
Sbjct: 126 GQLSPTLVHGDVEMDPLAMTVTYQGKPVQLKGKELALLSLFLHNPKKVLSRSAIEEKLYN 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E     ++V I  LR+KL     G  +I+TV G GY L + 
Sbjct: 186 WDEEVSSNSVEVHIHHLRRKL-----GSKFIQTVHGIGYRLGDE 224


>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
 gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TP+  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 NLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|253580967|ref|ZP_04858229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847809|gb|EES75777.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 247

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DDK +  +I + L+ E + V     G + I + +    D +I+D+ +  + G   
Sbjct: 20  ILVCDDDKDIVEAIGIYLEQEGYTVIKAYDGVEAINVLRSQPVDLLIIDIMMPKLDGIRT 79

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R      P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 80  TLKIREENP-LPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTRL 138

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +  TG LS+N D K V V G  + LT  EY ++ LL   +    +     
Sbjct: 139 GAAIPVENAHIYETGGLSINDDLKEVRVDGDVVKLTPIEYNILFLLMKNQGRVFSINQIY 198

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 199 ENIWNEEAVAADNTVAVHIRHIREKIEINPREPRYLKVVWGLGYKIEK 246


>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
          Length = 237

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
             +E     I+V++ +LRKK+  +      I TV G GY L + A     +    A
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAPAGASDAPNAA 233


>gi|78067449|ref|YP_370218.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968194|gb|ABB09574.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 273

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  +PG 
Sbjct: 32  MRILIAEDDSILADGLTRSLRQSGYAVDHVKTGVDADTALSMQTFDLLILDLGLPKMPGL 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 92  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 151

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 152 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 212 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 251


>gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ]
 gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ]
          Length = 221

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 123/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED  +LA  +   L+ + + V     G D         +D +ILDLGL   PG 
Sbjct: 1   MRLLLVEDSVSLADELVASLQRQGYAVDWLADGRDAARQGACEPYDLMILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R   ++TPV +L+  +S  +++ GL++GADDY+ KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +  G L ++   + V      I LT  E++++  L L     L+K     HLY
Sbjct: 121 GLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  E +  +I+V I +LR KL     G+  IET  G+GY  
Sbjct: 181 DGETERDSNVIEVHINRLRGKL-----GRTVIETRRGQGYRF 217


>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 249

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G + + + + +  DA++LD+ L D  G E
Sbjct: 25  RVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVMLPDFSGLE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+  R+RA++RR+  
Sbjct: 85  VLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G + S +V GDL+++ D++ V   G  + LT  E++++  L       L+K   L+ +
Sbjct: 145 VTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDRV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  I++++I  LRKK+   A  +  I T+ G GYVL+ 
Sbjct: 205 WSYDFGGQANIVELYISYLRKKI--DADREPMIHTMRGAGYVLKP 247


>gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 227

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+  L   ++ +L+   ++V     G+ G++     E+  IILD+ L  + GF
Sbjct: 1   MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R A I+TPV +L+  S + D+++GL  G+DDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   D+ +N  +  V   GH + LT KEY + E L   KN  +TK     H++ 
Sbjct: 121 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 180

Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +       IDV I  LRKK+ +       I T  G GY++ +  ++
Sbjct: 181 DEFDEFNASNFIDVHIKNLRKKIGDE--NHLIIRTKRGIGYIINDQNEN 227


>gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|229590929|ref|YP_002873048.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229362795|emb|CAY49705.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 235

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD+ LA  I   L    F V V   G+  +     ++   ++LDL L    G  
Sbjct: 8   KVLLVEDDEKLAGLIAHFLSQHGFEVRVEHRGDKALAAFLEFKPKIVVLDLMLPGQSGLH 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TP+ IL+      D + GL+SGADDY+ KP     L+AR+RA+ RR   
Sbjct: 68  VCRGIRTVS-DTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQAP 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L+++   + V +   +I LT  E++++ LL+    T L+++  LN + 
Sbjct: 127 EPTVRGALAFGRLAIDRSCRVVSLGDEQIDLTTMEFELLWLLASNSGTILSRDDILNRMR 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               +   + +DV+I KLR KL++       I+T+WG+GY+    A +
Sbjct: 187 GIAFDGLNRSVDVYISKLRGKLNDNPREPVCIKTIWGKGYLFNPFAWE 234


>gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
 gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L  +   V      E+ +     Y  D  ++DLGL  + G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   V+   + LT  EY+++E L       + KE  +  LY 
Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +  +I+V + +LR+KL  A GG   I+TV G+GY+  E
Sbjct: 181 DDEERDANVIEVLVGRLRRKLE-ACGGFKPIDTVRGQGYLFTE 222


>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 232

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD  + +++ ++L+++ + +     GE+G++      FD +I+D+ + +I G +
Sbjct: 3   KLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDST-FDLLIIDIMMPNISGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+  L+  S   DK+  L +G DDY+ KPF+  EL+ARI+A++RR   
Sbjct: 62  VCRKIREKSY-VPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S   A S I    L+++     V   G ++ LT KEYQ++ LL      T + +
Sbjct: 121 YDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++          I V I  LR KL    G  + I+TVWG+GY   E
Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|237749392|ref|ZP_04579872.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
 gi|229380754|gb|EEO30845.1| two component transcriptional regulator [Oxalobacter formigenes
           OXCC13]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IED+  +   ++L L++E + V+  D  + G+        D ++LDLGL D  G +
Sbjct: 6   RILTIEDESNIRRFVKLALETEGYEVFEADGLKRGLIEAGTRRPDLVVLDLGLPDGDGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
            +  LR      PV +LS  +S  DK+  L +GADDY+ KPF   EL+AR+RA +RR  R
Sbjct: 66  FITDLRNWS-DIPVIVLSARNSEHDKISALDAGADDYLEKPFGAGELLARVRAQLRRQQR 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   D+ ++   + VE  G  +HLT  EY+++  L+ + +  +T +  L  ++ 
Sbjct: 125 SGNDPTIRFADVCIDPVRRLVEKNGEPVHLTPIEYRILTFLASQPDRVVTHQQLLKAVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                ++  I V +  LRKK+   A    ++ T  G GY    ++K
Sbjct: 185 PGHTEDMHYIRVHMANLRKKVEKNASMPKHLVTEAGIGYRFVPDSK 230


>gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638]
 gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 219

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   ++  L    F+V     G  G        +DA++LDL L  + G 
Sbjct: 1   MRILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R    S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS 
Sbjct: 61  DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S +  G+++++  +   ++ G  + L  KE+ ++ELL       L ++     LY 
Sbjct: 121 GQTRSELRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+     ++V +  LR+KL     G ++I TV G GY L +
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSHFIRTVHGIGYTLGD 218


>gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 228

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/220 (37%), Positives = 120/220 (54%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   +E+ L++  F V     G+          +  +ILDLGL  + G 
Sbjct: 10  MRILLVEDDDLIGSGLEVALRNAGFTVDWARDGQHAELALATTHYLLVILDLGLPKLSGM 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L++LR+     PV +L+   +  DKVRGL +GADDY+ KPF+  EL++R RA++RRS+
Sbjct: 70  DLLKSLRLRGNEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRRSQ 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    LI    LSV+  A+TV   G R+ LT +E+ ++  L         +      LY 
Sbjct: 130 GRGSELIEWRGLSVDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   I+V +  LRKKL     G + I TV G GYV
Sbjct: 190 WHEEVESNAIEVHVSNLRKKL-----GGDVIRTVRGFGYV 224


>gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 220

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+ L     +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVARIRA++RR  
Sbjct: 61  RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L ++  A+ V      + LT KE+ ++E L++R    ++K   L H++
Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL  AA     I TV G GY L 
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRLE 218


>gi|257465593|ref|ZP_05629964.1| two component transcriptional regulator [Actinobacillus minor 202]
 gi|257451253|gb|EEV25296.1| two component transcriptional regulator [Actinobacillus minor 202]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A ++   LK  ++ V   + G+   E      +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  K STPV I++    ++ ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +   +  G ++++  +  VE+ G    I L+ KE+ ++  L  R    L++    + +
Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ID  I  LRKK+     GK  I+ V G G+++
Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKI-----GKEQIKNVRGVGWMM 218


>gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 232

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + +K
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSK 232


>gi|255971801|ref|ZP_05422387.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256958081|ref|ZP_05562252.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256963908|ref|ZP_05568079.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257079968|ref|ZP_05574329.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257417030|ref|ZP_05594024.1| two-component system response regulator [Enterococcus faecalis
           AR01/DG]
 gi|294779527|ref|ZP_06744922.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|300861078|ref|ZP_07107165.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|307268332|ref|ZP_07549713.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|307272098|ref|ZP_07553361.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|307276158|ref|ZP_07557289.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|307286853|ref|ZP_07566935.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|312951112|ref|ZP_07770017.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|255962819|gb|EET95295.1| two-component system response regulator [Enterococcus faecalis T1]
 gi|256948577|gb|EEU65209.1| two-component system response regulator [Enterococcus faecalis DS5]
 gi|256954404|gb|EEU71036.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256987998|gb|EEU75300.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257158858|gb|EEU88818.1| two-component system response regulator [Enterococcus faecalis
           ARO1/DG]
 gi|294453406|gb|EFG21813.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
 gi|295113733|emb|CBL32370.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300850117|gb|EFK77867.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
 gi|306502068|gb|EFM71354.1| regulatory protein VanR [Enterococcus faecalis TX0109]
 gi|306507152|gb|EFM76291.1| regulatory protein VanR [Enterococcus faecalis TX2134]
 gi|306511214|gb|EFM80221.1| regulatory protein VanR [Enterococcus faecalis TX0855]
 gi|306515358|gb|EFM83892.1| regulatory protein VanR [Enterococcus faecalis TX4248]
 gi|310630888|gb|EFQ14171.1| regulatory protein VanR [Enterococcus faecalis TX0102]
 gi|315036301|gb|EFT48233.1| regulatory protein VanR [Enterococcus faecalis TX0027]
 gi|315154148|gb|EFT98164.1| regulatory protein VanR [Enterococcus faecalis TX0031]
 gi|315158989|gb|EFU03006.1| regulatory protein VanR [Enterococcus faecalis TX0312]
 gi|315166289|gb|EFU10306.1| regulatory protein VanR [Enterococcus faecalis TX1302]
 gi|315171873|gb|EFU15890.1| regulatory protein VanR [Enterococcus faecalis TX1342]
 gi|323481725|gb|ADX81164.1| response regulator vanRG [Enterococcus faecalis 62]
 gi|327536016|gb|AEA94850.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 234

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D++ +A  +E+ L S+ + V     G+  +E     +FD  +LD+ L DI GF+
Sbjct: 4   RILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++  R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E+VARI+  +RR R 
Sbjct: 64  MVKKARE-KYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +            + I    L +N    T ++ G  I LT  E+ ++  L+ R+   +  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E+    ++  +  E     +   I +LR+KL        +I+TVWG GY +
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKI 233


>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
 gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
           15579]
          Length = 228

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+  ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+  S     V GL  GADDYI+KPF   EL+ARIR  +R+S G
Sbjct: 63  VCTEIKETQ-DLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            + S      L V++ +  V+  G  + L+  EY+++ +        +T+   L+ L+D 
Sbjct: 121 RSPSAFEICGLHVDMASGIVKKDGSEVFLSALEYRLLLVFINNPKNIITRSRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
          Length = 229

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 131/227 (57%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA  +EL L+ E +  +V D G  G++     ++D I+LDL L ++ G EV
Sbjct: 4   VLVIEDEVNLARFVELELQHEGYETHVEDNGRGGLQAALDNDYDLILLDLMLPELSGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR  K +TP+ +++   S+ D+V GL  GADDY+ KPF  EEL+AR+RA++RR    
Sbjct: 64  ARRLREVK-NTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRINIE 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  QS++   DL+V  + +        I+LT +EY+++ +L    N   ++E  L 
Sbjct: 123 TEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREELLK 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++    + E  ++DV+I  LR K+       +YI+TV G GYV+R+
Sbjct: 183 KVWGYDSQIETNVVDVYIRYLRNKIDQPDSRASYIQTVRGTGYVMRQ 229


>gi|312198458|ref|YP_004018519.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311229794|gb|ADP82649.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 221

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++ED+  ++  I L L  E F V V   G  G+   +     A++LD+ L  + G +VL
Sbjct: 2   LVVEDEPHISDLIRLYLTREGFGVEVRQDGAAGLTAARELAPVALVLDVRLPGLDGRDVL 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           RALR  +  TPV  ++      D++ GL+ GADDY+ KPF+  ELVAR+RA++RR+   A
Sbjct: 62  RALRAEENWTPVLFVTARDDEVDRILGLELGADDYLVKPFSPRELVARLRAVLRRAGPQA 121

Query: 124 QSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G + ++LD + V   G  + LT  E+ ++  L  R     T+E  L+ ++
Sbjct: 122 AQPATRTLRAGAVELDLDRRQVAAAGVPVALTATEFDLLAALLARPGLVYTRERLLSQVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                   + +DV + ++R KL + +     I TV G GY
Sbjct: 182 GYHAAAGTRTVDVHVAQVRAKLGDVS----PIRTVRGVGY 217


>gi|262373379|ref|ZP_06066658.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262313404|gb|EEY94489.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 238

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 233

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 73  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 133 STQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPDF--RIETVRGLGYRLE 230


>gi|218132898|ref|ZP_03461702.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991771|gb|EEC57775.1| hypothetical protein BACPEC_00759 [Bacteroides pectinophilus ATCC
           43243]
          Length = 237

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +       LK+  + V   D G+           D ++LD+ L DI G E+
Sbjct: 16  IYVVEDDQNIREIESFALKNSGYIVESFDCGKTFFNKVHNKVPDLVLLDIMLPDIDGLEI 75

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ ++      + PV +++  SS  DKV+GL  GADDY++KPF   EL++R++AI+RRSR
Sbjct: 76  LKRMKSDFELCNIPVIMVTAKSSEIDKVKGLDQGADDYMTKPFGVMELISRVKAILRRSR 135

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   I   GD+ +N +   V V    + LT KEY +++LL       +++E+ ++ ++
Sbjct: 136 NTSDEKIFKAGDIIINEERHAVYVNDEPVELTFKEYNLLKLLISNYGIVMSREVIMDRIW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               E E + +D+ I  LRKKL  +      I+TV   GY
Sbjct: 196 GTSFEGESRTLDMHIKTLRKKLGESGS---MIKTVRNVGY 232


>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|150019435|ref|YP_001311689.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149905900|gb|ABR36733.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 242

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/242 (28%), Positives = 119/242 (49%), Gaps = 25/242 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+ ++  +++  L  ENF V     GE  +++ + +E   ++LD+ L DI GFE
Sbjct: 5   KILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +        + +L+    + DK+ G++ GADDYI+KPF   E+ ARI AI RR   
Sbjct: 65  LCKIMSQKSY---IVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSK 121

Query: 122 HAQSLIVTG---------------------DLSVNLDAKTVEVQGHRIHLTGKEYQMIEL 160
           +  +                          + ++N D +TV   G  I L  KE+ ++  
Sbjct: 122 NIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSY 181

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           L   K     ++  LN ++      + + +DV I +LR  L +     + +ETV+G GYV
Sbjct: 182 LYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDD-KENSIVETVFGVGYV 240

Query: 221 LR 222
           +R
Sbjct: 241 IR 242


>gi|257790147|ref|YP_003180753.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317489597|ref|ZP_07948102.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|257474044|gb|ACV54364.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316911329|gb|EFV32933.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
          Length = 237

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 2/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA ++  +L    +   V   G  G+   +  ++D IILD+ L  + GF
Sbjct: 1   MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   IS PV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 61  AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K+M +  ++ 
Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-AKDETCEYL 233
                E   ++ ++  LRKK+         IET+   GY    + A D+  E  
Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTAR-IETLRRAGYRFVADAAPDDASESA 233


>gi|160932807|ref|ZP_02080196.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
 gi|156867881|gb|EDO61253.1| hypothetical protein CLOLEP_01648 [Clostridium leptum DSM 753]
          Length = 225

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED++ L   I+  LK   ++V     GE+  +     E+DA++LD+ +  + G 
Sbjct: 1   MRILIAEDERDLNQLIKKRLKDAGYSVDACFDGEEVFDYLLCAEYDALVLDIMMPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR  + + PV +L+   SIED+V GL +GADDY+ KPF  EEL+AR+R ++R+  
Sbjct: 61  TVLKKLRREENALPVLLLTAKDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVLLRKPV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++   DLS+++D + V      + L+ KEY ++  +       L+++    H++D
Sbjct: 121 TEKSSILNVADLSLHVDTRRVFRGNRELQLSSKEYSLLHYMMQNAGVVLSRDKLEQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   +IDV+I  LRKK+ +    K  I TV G GYVL+++
Sbjct: 181 YDFSGGSNVIDVYIRFLRKKV-DEGYDKKLIHTVRGHGYVLKDD 223


>gi|33603516|ref|NP_891076.1| response regulatory protein [Bordetella bronchiseptica RB50]
 gi|33577640|emb|CAE34905.1| response regulatory protein [Bordetella bronchiseptica RB50]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD      ++  L    ++V +   G DG+   +   +D ++LD+ L    G+
Sbjct: 1   MAILVIEDDLKTGDYLKKGLLESGYSVDLARNGIDGLHRLREQRYDVLVLDVMLPGKDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  +R      PV  L+    + D++RGL+ GADDY+ KPF+  ELV RI+ ++RR  
Sbjct: 61  QVIEEVRQDS-DVPVIFLTARDHVADRIRGLRLGADDYLVKPFSFAELVLRIQTMLRRGA 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +   DL ++   + V   G  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 ARAAETLQVADLRLDPVRRKVTRGGASIVLTNKEFMLLHLLIRRQGEALSRTIIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +A      I+TV G GY L E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DAPFPLKLIQTVRGIGYALAEQP 223


>gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
 gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14163]
 gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator
           [Clostridium symbiosum WAL-14673]
          Length = 233

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +   ++  L+   + V     G   +EL +  +   I+LDL L DI G E+
Sbjct: 7   ILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLMLPDIMGEEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R      P+ +L+  +   D ++GL+ GADDYI KPF+   +VA+  A++RR    
Sbjct: 67  CRMVRAVS-RVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRRVESD 125

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                      G L ++     V+  G    LT  EY+++  ++   N T T+E  + + 
Sbjct: 126 KLISVPVSYNQGSLVIDFQNGDVKAGGQDAGLTPTEYKILATMAKAPNRTFTREQLITYA 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            D   +   + ID +I  +R K+        +I TV G GY   
Sbjct: 186 LDDNFDGYDRSIDTYIKSIRSKIEEDRKNPVFIVTVHGIGYRFV 229


>gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
 gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family
           [Methylosinus trichosporium OB3b]
          Length = 230

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 122/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD      +    + +         G  G        +D I++D  L  + G 
Sbjct: 4   MRILIVEDDSEAGAYLVKAFREQGHVADHEVDGLAGYAAASDGRYDVIVVDRMLPRLDGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++  LR  KI TP  ILS +  ++D+V+GL++G DDY++KP+   EL+AR+ A+ RR  
Sbjct: 64  SLISGLREQKIETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALARRRG 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G    +++   GDL ++  A  V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 124 GAKQEETVYRVGDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D   +P+  +IDV I +LR K+ + +     + T+ G GY++RE A+
Sbjct: 184 WDYHFDPQTNVIDVHISRLRAKI-DKSRETPLLHTIRGAGYMIREGAR 230


>gi|168212863|ref|ZP_02638488.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170715642|gb|EDT27824.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 232

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS
           (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system
           with BasS [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  L   + L ++SE +         +         +  I+LDLGL D  G 
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G+L +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +EP    ++V I  LR+K+     GK+ I TV G GY+L  N   E
Sbjct: 181 WDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223


>gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
 gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
          Length = 238

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 124/229 (54%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D++ +   + + L+ E + V     G+DG+E  K+ ++  ++LD+ L  + G  
Sbjct: 4   RVLVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDYSCVLLDVHLPMLNGKT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR  K +TPV I+S  +  + +V G + GADDY+ KPF+  EL+ R+ AI++R++ 
Sbjct: 64  ILAELRKTK-ATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQRTKR 122

Query: 122 H--------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     + ++V   L ++++A  V V+   I LT KE+ ++  L+   +    +  
Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNAHKVIVEDSEIFLTPKEFDLLLFLAKSPDKAFKRTE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
            L  ++D     +++ +D  I ++RKK+   +      I TVWG GY  
Sbjct: 183 ILRAVWDYDFYTDLRTVDTHIKRVRKKIDKISPRVAKMIITVWGIGYKF 231


>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ L   +E  L +E F V     G  G E      +  I+LD+ L  + GF+
Sbjct: 4   RILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVMLPGLNGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    S PV +L+      D++ GL+ GADDY+ KPFN  ELVARIRAI RR   
Sbjct: 64  VLRRIRGES-SVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRRQST 122

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A++++V GDL ++   +TV      + LT  E+ ++ELL  +    ++++   
Sbjct: 123 AQKDGTAAEAVLVVGDLVLDPGRRTVLQGERSVVLTSIEFSVLELLLAQAGRVISRDDIC 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +     +     + IDV +  LR+KL  A  G   I++V G GY+
Sbjct: 183 SQALGRQLNSFDRSIDVHVSSLRRKLGPAGDGSERIKSVRGIGYI 227


>gi|325272774|ref|ZP_08139118.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324102081|gb|EGB99583.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 232

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  LA      L++  F V V   G   +      + D +ILDL L    G  
Sbjct: 7   RILIVEDDPRLAELTAEYLQANGFEVAVEGDGARAVRRIVDSQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R      P+ +L+  S   D++ GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRRARNQYPG-PILMLTARSDELDQIHGLDLGADDYVCKPVRPRLLLARIQALLRRSEA 125

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L ++   +   +    I LTG E+ ++ LL+      L++E     L 
Sbjct: 126 LDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLSREQIFTALR 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + + + ID+ I ++R K+ +       I+T+  +GY+    A 
Sbjct: 186 GVGYDGQDRSIDIRISRIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232


>gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 221

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L     FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGEAIGSRLTRLGHAVDLERDGAAASSLLGVESFDLVVLDVMLPSLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  SVLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G LS++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218


>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 224

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +D+  +   +   L+ E   V     G +  +          ++D+ + ++ GFE+
Sbjct: 4   ILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  +   P+ +L+ +     KVRGL+ GADDY+ KPF  EELVAR+ A++RR R  
Sbjct: 64  TRWLREER-DVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRIR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A   +    L +  D   VE  G R+ L  KE+Q++  L+     TL+++  +  ++   
Sbjct: 123 ADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWGYD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + + +DV I +LR K          I TV G GY L  NA
Sbjct: 183 YAGDERTVDVHIKRLRVKFPEDVY-PFRIRTVRGLGYRLEVNA 224


>gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 226

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+A  +   L  E ++V V   G   ++     +FD +ILDLGL  + G EV
Sbjct: 4   VLLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  + S  V +L+  +   D V GL +GADDY+SKPF   EL+AR+RA++RR  G 
Sbjct: 64  CRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLRRHGGR 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +++  G + +   A+ V V G  I L  KEY+++ +L       ++++  L  ++   
Sbjct: 124 EDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILREVWGDV 183

Query: 183 DEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLREN 224
           +    K +D+ +  LR+K+ +     +  I TV G G+ +  +
Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGPAVERRIATVRGVGFRINTD 226


>gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
 gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
          Length = 223

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD   A ++   L     +V     G  G+   +   +D  ++D  +  + G 
Sbjct: 1   MRILVVEDDAEAATAMVRGLSEAGHDVTHAVDGAFGLLESQKGGYDVYVVDRMMPRLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
            ++  +R     TPV  LS +  +ED+V GL++GADDY+ KP+   EL+AR+ A+  RR 
Sbjct: 61  GMVETVRKGGDQTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRE 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  Q+++  GDL +NL A+TV      I L  +E+Q++E L      ++T+ M L  ++
Sbjct: 121 TGGVQTVLKVGDLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +P+  +IDV I +LR K+ +    +  ++TV G GY L 
Sbjct: 181 EYHFDPQTNVIDVHISRLRSKI-DKGFDRAMLQTVRGAGYRLE 222


>gi|28912448|gb|AAO53554.1| OmpR [Yersinia enterocolitica]
          Length = 239

 Score =  252 bits (645), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 106/231 (45%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++E    L   +E  +  + F V      E    L     F  ++LDL L    G  
Sbjct: 6   KILVVEIHMRLRALLERYVTEQGFQVRSVANAEQMDRLLTGESFHMMVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+ +++      D++ GL+ GADDYI KPFN  EL+ARIRA+VRR   
Sbjct: 66  ICPRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVVRRQAN 125

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +++I  G   +NL  + +  +   + LT  E+ +++ L       L+++  
Sbjct: 126 ELPGAPSQEEAVIAFGKFKLNLGTREMFGEDEPMPLTSGEFAVLKALVSHPREPLSRDKL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N           + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 186 MNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236


>gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli]
          Length = 222

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L   + L  ++E +            +  +   +  ++LDLGL D  G 
Sbjct: 1   MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K + PV IL+   ++ DK+ GL  GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S ++ G+L++N+  + V + G  + LT KEY ++  L L+  + + +E+  N +Y+
Sbjct: 121 NQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +EP    ++V I  LR K+  A      I TV G G++L  N ++
Sbjct: 181 WDNEPSTNTLEVHIHNLRDKVGKA-----RIPTVRGFGFMLVANEEN 222


>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 249

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 124/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   + + L+ E + +     G+  +   + +  DA++LDL L D+ G  
Sbjct: 24  RVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGLS 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L  LR      PV  L+   + ED++ GL +G DDY++KPF  E++VAR+R ++RRS  
Sbjct: 84  ALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSGA 143

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               + +++V GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ +
Sbjct: 144 ADRRSDAVLVVGDLILDEDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDRV 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 204 WSYDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 246


>gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
 gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia gladioli BSR3]
          Length = 221

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L     FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPSMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G LS++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLEILASRPQRVFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218


>gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
           DW4/3-1]
          Length = 235

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  L  ++   L+ E + V       +     +   FD ++LDL L D  G+ 
Sbjct: 9   RILVVEDDLNLRLTLVDNLEEEGYAVEAASTLAEARAKVRGTAFDVVVLDLMLPDGDGYT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A  S+ V +L+  S  +D V+G + GADDY+ KP+   EL+ARIRA+ RR  G
Sbjct: 69  LCRELRQAATSSRVLMLTARSLEDDVVKGFEVGADDYVPKPYRLRELLARIRALARRGAG 128

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++      V+L ++ +    G  + LT  E+ ++  L       LT++  L+ +
Sbjct: 129 APVSTEVLTFDRFRVDLASRRILNATGQALELTRTEFDLLVFLLRHAGKALTRDQILSSV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +   +D F+  LRKKL   +  +  I +V G GY L
Sbjct: 189 WGEDVVVDGHTVDNFVSNLRKKLEWTSTSRFEIRSVRGVGYRL 231


>gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+  L   +   L    + V   + GE    L K   +D  ++DLGL    G 
Sbjct: 1   MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R      P+ IL+     +DKV GL++GADDY+ KPF+  EL+AR+ A++RRS 
Sbjct: 61  EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  G ++++  AK V++ G  + LT  EY  +E L  R    ++K     HLY 
Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VFI +LRKKL      K  I T+ G+GY  
Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKP-ITTLRGQGYRF 220


>gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158]
 gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158]
          Length = 221

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLEADGATAHGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L+++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLAIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL   AG    I TV G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRRKL---AGSSVEIRTVRGMGYQI 218


>gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D++ +   +   L  E + V     GE+ +        + I+LDL L  + G E
Sbjct: 5   HILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGVDGLE 64

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+    +   P+ +LS      D V GL+ GA DY++KPF+   L+AR+RA++RR 
Sbjct: 65  VCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLIARLRAVLRRR 124

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +   DL ++     V +QG ++ LT  E++++ +L+ R     T+   +N
Sbjct: 125 SAEPLSESAPLTIHDLVIHPGRHEVLIQGQQVDLTVTEFRLLHMLARRPGWVFTRSQIVN 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++        + +DV +  LRKKL       +YIETV G GY  +E
Sbjct: 185 TVHGDDYPVSDRSVDVQVVGLRKKLGALG---DYIETVRGVGYRFKE 228


>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++ + I + L+ E + V     G + +E       D +ILD+ L D  G+
Sbjct: 1   MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVMLPDTDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR +
Sbjct: 60  ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +I  G++++    + V V    I LT +E+ + +L          ++  L 
Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +D+ + +LRKKL N+     YI+T++G GY L
Sbjct: 180 KVWGFEYIGNTRAVDIMVQRLRKKLGNSG---EYIKTIYGVGYKL 221


>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
 gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  ++  +++ L+   ++V     G   + + +  + D ++LD+ L +  G+ +
Sbjct: 4   ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEKNGWTI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    + PV +L+ +  +  ++ G   GADDYI KPF  +E+VAR+RA++RR+ G 
Sbjct: 64  LKEIRERS-TCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVGS 122

Query: 123 AQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             S      G L ++  A  V + G  I LT ++  ++  L+   N T T++  ++ ++ 
Sbjct: 123 PDSATSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + +D+ I +LRK L      +  I+T+ G GY L
Sbjct: 183 WEYEGSDRAVDLAIKRLRKALKEWDEAEGEIKTLRGLGYQL 223


>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
           fragilis 3_1_12]
 gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 224

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 121/221 (54%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK     V V + G  G EL +   FD +I+D+ +  + G E
Sbjct: 3   KILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+AI+RR R
Sbjct: 63  LCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILRRGR 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   +V  DL +N +++        I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EDSARQLVCDDLVLNCNSRRARRGEAEIDLTVKEYRLLEYFMTHQGLVLSRLTLLRDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNVVDVYVNYLRGKIDKDFS-KKLIHTVVGSGYIM 222


>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 228

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 57/225 (25%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +N+     G++ + + + YE   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        + +  + ++  ++TV + G  I LT  E++++      +   +++E  +N 
Sbjct: 124 AVKVLTADTLTSSGIHLHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + I+  I  LR KL   A     I TV   GY   
Sbjct: 184 IFGYEFAGDDRTINSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter
           heparinus DSM 2366]
 gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM
           2366]
          Length = 224

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K LA+ +E  LK   +   +     DG+E      +D I+LDLGL D  G 
Sbjct: 1   MKVLIVEDEKTLAYEMEDFLKKAFYICDLAHNISDGLEKISANSYDFILLDLGLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   +         IL+   ++ED++ GL  GADDY+ KPF+  EL +R++AI RR  
Sbjct: 61  TLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIARRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + L+  GD  ++L  + +   G +I L+ KE+ ++  L L  N  LT+     H++ 
Sbjct: 121 NLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSEHIWG 180

Query: 181 --GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               D+ +   ID  I  +RKKL NA    N++ETV G GY +++
Sbjct: 181 TFADDDYDSNYIDAHIKNIRKKL-NAWAATNFLETVRGVGYRIKK 224


>gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
 gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
           14469]
          Length = 247

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ LA  +EL L  E + V     G + +E+    +F  I+LD+ L  + G E
Sbjct: 10  HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116
           VLR L+  K  TPV +L+   ++ DKV GL +GA DYI+KPF  EEL+ARIR  +     
Sbjct: 70  VLRRLQQEKP-TPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128

Query: 117 -----RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                RR       +   G L ++     V   G  I LT +E+QM++ L   ++  LT+
Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           E+ LN +       E  ++DV+I  LR K+  A   K  I+TV G GYV++  A D
Sbjct: 189 EVLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIK-MIQTVRGVGYVIKSEAPD 243


>gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
 gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
          Length = 218

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 127/222 (57%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  L  +++ +L+   + V     GE+ ++     E+D IILD+ L  I G+
Sbjct: 1   MKILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R   I+TP+ +L+    +EDKV+GL  GADDY+ KPF  +EL+AR+RA++RR+ 
Sbjct: 61  QVCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I  G+  ++L+ + V+  G ++ +T K + ++E L   +   +T E  +N  +D
Sbjct: 121 AEKSNIIKIGEFVIDLNRREVKKNGTKLMITPKLFCILEQLLRNRGKVVTYETLMNKCWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             D P  + +   I  LRK L +    ++ I  V G GY + 
Sbjct: 181 INDYPTRETVRANIKLLRKILQD----RDIIHNVSGVGYKIE 218


>gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 257

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSIQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
 gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
          Length = 245

 Score =  252 bits (644), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++     D G   ++  +    + ++LDL L    G E+
Sbjct: 28  ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 87

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 88  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRG 146

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 147 GAQPESL--LLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 204

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 205 RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRL 243


>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
 gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
           SK58]
          Length = 254

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  + +      + V V   G   +EL      D  ILD+ L D+ G +
Sbjct: 32  RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVMLPDMDGLD 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL  LR      P   L+   + ED+V GL +G DDY++KPF+ EE++ R   +V+RS  
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++V GDL +N     V   G  I LT  +Y +++ L     T L+KE  L  ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    I++++I  LRKK+   A     I TV G GYV+R 
Sbjct: 212 GYDFGGRANIVELYISYLRKKI--DADRDPMIHTVRGAGYVIRP 253


>gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1]
 gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 23/243 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIEL---CKFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + STPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRGHAQS---------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
           R+ G   +               ++  G +S+ L  + V V G  + LT KE+ ++ LL+
Sbjct: 120 RTGGSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLA 179

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            R      +E  ++ ++    E   + ++V +  LR KL         IETV G GY L 
Sbjct: 180 QRPGVVFRREQIISEVWRTSWEGTGRTLEVHVASLRSKLRM----PALIETVRGVGYRLV 235

Query: 223 ENA 225
             A
Sbjct: 236 TPA 238


>gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system
           [Geobacillus thermodenitrificans NG80-2]
 gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 234

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 126/230 (54%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD++LA  IE  L+ E + V      E+G  L     FD IILD+ L D  G++
Sbjct: 3   KLLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINLPDGSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+ +    + + GL+ G DDYI+KPF     ++RI+A++RRS G
Sbjct: 63  LCKHIRATS-DVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H  +  ++ +G ++V+  A TVE  G +I L+ +EY+++  L  R  T ++++  L  L 
Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181

Query: 180 DG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +G     +   + V+I +LR+K+ +      YI T  G GY   +    E
Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGYKWNKEVTRE 231


>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 275

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 13/240 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L    F       G +   + +   +D ++LD+ L    G  
Sbjct: 6   HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      PV +L+ +    D++ GL+ GADDY++KPFN  ELVARIR ++RR+R 
Sbjct: 66  LCRKLRARS-ELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124

Query: 122 HAQSL-----------IVTGDLSVNLD-AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
             +++           I     +++      V   G  ++L+G EY+++       N  +
Sbjct: 125 LPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +++  L+       E   + IDV + +LR +L +       I+TV G GY L  + + + 
Sbjct: 185 SRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDVERDA 244


>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
 gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
          Length = 233

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 123/234 (52%), Gaps = 5/234 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL I+D+  +   + L L+   F        +D +   +    D ++LD+ + ++ G
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIMMPEMDG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+V   +R      P+ +L+      D V+GL  GADDYI KPF++EEL+ARI A++RR+
Sbjct: 60  FQVCEEIRKFW-HVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRT 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++V   L ++ ++  +  Q   I LT KE+ M+ L    +N   ++E  +N ++
Sbjct: 119 KIE-DKVVVFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCEY 232
                 E + ID  +  LR+KL  +     +Y++TVWG GY  ++ A  +  E+
Sbjct: 178 GYHVSIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYKWQKFADRKPLEH 231


>gi|255314146|ref|ZP_05355729.1| two-component response regulator [Clostridium difficile QCD-76w55]
          Length = 234

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++  I+  L+ E F++ ++     G E+    E+  I+LD+ L D  G+E
Sbjct: 3   KLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR   
Sbjct: 63  LCKYIRGFS-QVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  GDLS+      V      I LT  EY+++ +L   KNT L++   L  L
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   D      + V+I +LR+K+ +      YIETV G GY  
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKW 225


>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 232

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 114/225 (50%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  +IE+ L +E +NV V   G   +++ +  +   II+DL + ++ G   
Sbjct: 6   ILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREEDIHLIIMDLMMPNLDGTRA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR  K   P+ +LS  S   DK+ GL  GADDY++KPFN  EL+AR+ + +RR    
Sbjct: 66  TIELRREK-EIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRRYTRF 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +    + +I  G L +N   K V V G    LT  E++++ LL        + E   
Sbjct: 125 SSMTNDKNKEVIAVGGLELNRLNKEVNVNGKEAKLTPLEFKILSLLMSNLGRVFSIEEIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +++      V  + V I ++R+K+        Y++ VWG GY 
Sbjct: 185 ERVWNEAPY-NVDTVTVHIRRIREKIEIDPRNPQYLKVVWGVGYK 228


>gi|239629145|ref|ZP_04672176.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519291|gb|EEQ59157.1| two component transcriptional regulator [Clostridiales bacterium
           1_7_47FAA]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K + + IE +L  +N+ V     G DG++L   ++ D ++LDLGL D+ G E+
Sbjct: 7   IIIIEDEKNICNFIETVLTPQNYQVTCAYTGTDGLKLINTHKPDVVLLDLGLPDMDGLEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R    S P+ ++S  +    KV  L  GADDY++KPF   EL+ARIR  +R S+ +
Sbjct: 67  IQEVRA-YSSVPIIVISARTMERSKVAALDMGADDYLTKPFGTAELLARIRTALRHSQRN 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S    G L ++ + + V+V    +HLT  EY+++ LL+      LT E  ++ ++ 
Sbjct: 126 VSENSKYDVGGLLIDFERRLVKVNDQEVHLTQIEYKLVSLLAQNAGRVLTYETIISKIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + + +I+ V +  +R+KL        YI T  G GY +RE 
Sbjct: 186 PFADSDNQILRVNMAHIRRKLEENPAEPKYIFTEIGVGYRMREE 229


>gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
 gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family
           [Arthrobacter chlorophenolicus A6]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  L  ++ + L +  + V     G   +     +  D +ILDLGL D+ G +
Sbjct: 19  RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGLPDMDGVD 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VLR LR    + PV +LS      DKV  L +GADDYI+KPF  +EL+AR+RA+ RR   
Sbjct: 79  VLRDLRRWS-TLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVPA 137

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++ +   SV+L A+ V+  G  + LT  E++++E+L L  N  +T++  L  ++ 
Sbjct: 138 PEAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVWG 197

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E   + V++ +LR+KL   AG   ++ T  G GY    
Sbjct: 198 PGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGYRFVP 240


>gi|59713362|ref|YP_206137.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197337719|ref|YP_002157770.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
 gi|59481610|gb|AAW87249.1| DNA-binding response regulator in two-component regulatory system
           with CusS [Vibrio fischeri ES114]
 gi|197314971|gb|ACH64420.1| transcriptional activator protein IrlR [Vibrio fischeri MJ11]
          Length = 226

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 120/226 (53%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+      ++  L    + V ++  G DG+      ++D IILD+ L  + G+
Sbjct: 1   MKLLIIEDETKTGEYLKKGLTESGYTVDLSQDGADGLYNATTNQYDLIILDVMLPKLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L+ LR  +  TP+ +L+    I+D+V+G + GA+DY+ KPF   EL AR+   +R   
Sbjct: 61  QILQTLRNCENDTPIIMLTAKDQIDDRVKGFELGANDYLIKPFAFAELKARVENALRAKS 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + + +V  DL ++L  +T       I LT KE+ ++EL   ++   L++    + 
Sbjct: 121 VISQPSSNELVLHDLKLDLLKRTATRNQDNITLTAKEFSLLELFMRKQGEVLSRTTIASL 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++D   + +  +IDV + +LR K+ +       I TV G GY + E
Sbjct: 181 IWDMNFDSDTNVIDVAVKRLRSKI-DKPYDTPLIHTVRGMGYKMDE 225


>gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1]
 gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1]
          Length = 251

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 17/238 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+ +   IE+ L+ + + V+    G +G+ + +  E    I+D+ +  + G  
Sbjct: 15  HILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVIEKEEIHLAIVDIMMPRMDGIT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR      PV  LS  S   DK+ GL  GADDY++KPF   EL+AR+ + +RR R 
Sbjct: 75  MVIKLREQ-YDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRR 133

Query: 122 ---------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                            +++   G L +N D   + V G  + +T  E++++ LL     
Sbjct: 134 FMKLLEEKEAGGQEEQDKNVYRIGGLELNEDTVELFVDGSPVKVTPMEFKILLLLMKNPG 193

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + E     +++ R    +  + V +  +R+K+        Y++ VWG GY + + 
Sbjct: 194 HVFSAEEIYERVWNER-AVNIDTVMVHVRNIREKIEINPRNPKYLKVVWGVGYKIEKQ 250


>gi|300790141|ref|YP_003770432.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299799655|gb|ADJ50030.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L+   + V +   G   +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLEFNGYQVQLASDGAQALEAIIADRPDAMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR      P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAI 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G A   +   DL+++   + V   G  I LT  E+ ++EL        LT+   L
Sbjct: 121 PEGQNGQASEALAFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 EEVWGYDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 230


>gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 227

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+ ++ED++AL+  +   L++E F V     G++     +    D +ILD  L  + G E
Sbjct: 4   RVAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  ELVAR++A++RR+
Sbjct: 64  LCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     +++  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 RPEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMQDVIRTVRGAGYSME 226


>gi|300697830|ref|YP_003748491.1| OmpR family transcriptional regulator [Ralstonia solanacearum
           CFBP2957]
 gi|299074554|emb|CBJ54105.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           CFBP2957]
          Length = 245

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 6/240 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDMPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+      + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFGFGPFKLNFRMRTLFRGDRALAISDTEFALLKLLVTHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
             +Y        + IDV I +LR+ L   A    YI+TV GRGY    + +D   E    
Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDERDAHDEVQSQ 244


>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 236

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 5/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED++ +A  +   L  + + +     G+  +E+C     D IILDL L  + G+E
Sbjct: 5   KILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWE 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+   I    P+ IL+      D + GL+ GADDY+ KPF+  EL ARI+ I+RR+
Sbjct: 65  VCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRA 124

Query: 120 RGHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     I  G L +  DA  +  +  +I LT  E ++I++L       +++E  L  
Sbjct: 125 HPASPQNETIKLGKLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      E + IDV I +LR K+  A    N IETV  RGY L  +  DE
Sbjct: 185 VWG-TYLGETRTIDVHISRLRTKVKKAGLNFNLIETVRHRGYRLGGDINDE 234


>gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101]
 gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  +L+ E F V     G +G    +F++FD ++LDL L  I G   
Sbjct: 7   ILVVEDDIDINNLLSKILEKEGFKVRQAFSGSEGKMCLEFFDFDMVLLDLMLPGITGEIF 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R  K +TP+ ++S  +++EDK+  L+ GADD+ISKPF+  E++AR+ A++RRS+  
Sbjct: 67  IDEIRKIK-NTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKIT 125

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             S     I   +L +   ++ V+V+G  I LT KE++++ELL        TK      +
Sbjct: 126 NSSEGVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++     +   I+V I  LR K++      +YI+T+WG G+ +
Sbjct: 186 WEEEFLGDDNTINVHISNLRNKINLLDNENDYIKTIWGVGFKM 228


>gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family
           [Rhodospirillum rubrum ATCC 11170]
          Length = 249

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 59/241 (24%), Positives = 119/241 (49%), Gaps = 7/241 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD     ++   L+ E + V   + G+   ++      D I+LD+ L  + G +
Sbjct: 5   HILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGLQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +LR +R       V +++G     D++  L+ GADDY++KPFN  EL+AR + ++RR+  
Sbjct: 65  LLREIRHQS-EVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  ++       ++++  + +    G  + LT  E++++   + R    +T++  L
Sbjct: 124 AREASEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDNLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
           +++      P  + +DV + +LR+K+        +I TV G GYV  ++   E     ++
Sbjct: 184 DYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFADSRHIEPGSPEKS 243

Query: 236 A 236
           A
Sbjct: 244 A 244


>gi|89096971|ref|ZP_01169862.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
 gi|89088351|gb|EAR67461.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
          Length = 254

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL EDD+ L   I  +LK + F        GED  E  K   +D +ILD  + +  G 
Sbjct: 32  KILLAEDDEYLGELIVHLLKKKGFGKADWVMEGEDAYEYAKASYYDVLILDWMMPNGDGI 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V R LR    S  + +L+   ++ D+V GL++GADDY+ KPF  +EL AR++A+ RR  
Sbjct: 92  SVCRRLRREGYSGAILMLTARDAVSDRVEGLEAGADDYLIKPFEIDELAARLKALSRRML 151

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I    L +N  + T+ + G  I LT +EYQ++E+L   K   LT+EM L+ ++
Sbjct: 152 APLQEDVIQWKSLELNRTSHTLFLNGEEIFLTPREYQLLEMLLRNKGQVLTREMILDRIW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  +K ID  I  LRKK+       + IET+ G GY + 
Sbjct: 212 GIESDVSMKTIDATIKLLRKKIDKHGTN-SLIETIRGVGYKIE 253


>gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 601

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +   L S+++ V     G++G +  + Y +D I+LDL L  + G 
Sbjct: 1   MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R LR +   TP+ +L+   +   KV GL +GADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   +L ++     V   G  +HLT KEY ++EL     +   +    ++ L+ 
Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228
             + P    +   I  LR+KL  A   ++ I+TV+G GY L+     ++E
Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREE 230



 Score = 36.0 bits (83), Expect = 4.4,   Method: Composition-based stats.
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYV 29
           R+++++DD  +  +++ +L +    VY 
Sbjct: 396 RVMIVDDDPQILTTLQTLLSAWGIKVYT 423


>gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 221

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  ++   +  +   V             +   +D I+LDL L D  GF
Sbjct: 1   MRVLLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR +R   I+TPV IL+    + D++ GL +GADDY+ KPF+  EL AR+ A+ RR R
Sbjct: 61  GFLRTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRYR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   +I  G+L ++L    +   G  + LT +E+ + E    R    L++    + LY 
Sbjct: 121 GNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLEDRLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E   I+V++ +LRKKL   A     I TV G GY L 
Sbjct: 181 FGAEIESNTIEVYVSRLRKKLGRDA-----IVTVRGMGYRLE 217


>gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913]
 gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913]
          Length = 219

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  ++     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ ++  K   PV IL+  SSI+DKV+GL  GADDY++KPF   EL AR+R   RR  
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD++++  A +V +    + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E     I+V I  LRKK  +      +I+T+ G GYV
Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPSD-----FIKTLRGIGYV 215


>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
 gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
           ZC1]
          Length = 233

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 124/234 (52%), Gaps = 5/234 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL I+D+  +   + L L+   F        ++ ++  +    D ++LD+ + ++ G
Sbjct: 1   MKTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHVDLVLLDIMMPEMNG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           ++V + +R      P+ +L+      D V+GL  GADDYI KPF++EEL+ARI A++RR+
Sbjct: 60  WQVCQEIRKFW-DVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRRT 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +I    L ++ ++  V  Q   I LT KE+ M+ L    +N   ++E  ++ ++
Sbjct: 119 -ISEEKVINFEGLCLDRESFEVYFQHKAIPLTPKEFAMLALFLDYQNRAFSREHLIHAVW 177

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRENAKDETCEY 232
                 E + ID  +  LR+KL  +     +Y++TVWG GY   ++A  +  E+
Sbjct: 178 GYDVTIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYKWHKSANRKRMEH 231


>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +   + ++L +E + V   D G + I  C+    D IILD+ +  + GF+ 
Sbjct: 5   VLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ--DLIILDIMMPGMDGFKT 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + P+  L+  +  +DK  G  SG DDY+ KPF+  EL++R+ A++RR    
Sbjct: 63  CRRIREL-TNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVY 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S     ++I   DL V+ ++  V V    ++LT  EY++++LL        + +   
Sbjct: 122 RGKSNIEESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELY 181

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D          I V I  LRKKL        YI T+WG+GY  
Sbjct: 182 ESIWDESYLYTANNTIMVHIRNLRKKLLVDPSNPKYIRTIWGKGYRF 228


>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
 gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
          Length = 236

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 16  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 76  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 135

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 136 STQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 195

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 196 YAGDDRTVDVHIKRLRERFATTPDF--RIETVRGLGYRLE 233


>gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 223

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I   L+     V     G       +   + A +LDLGL    G 
Sbjct: 1   MRILLVEDDPLLGDGIRAGLRQAGLQVDWVRDGHAAETELRTRSYAAAVLDLGLPLKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ++R A ++ PV +L+   ++ D+VRGL  GADDY+ KP +  EL AR+RA+VRR+ 
Sbjct: 61  DVLSSVRRAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +   D+ +   A+ V   G  + ++ +E+ ++ +L L     +++E     +Y 
Sbjct: 121 GQPQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   ++V I +LR KL +       I TV G GYVL
Sbjct: 181 WGREVESNTVEVHIHRLRAKLGSD-----LIRTVRGVGYVL 216


>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 226

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD  +   I++ L+      V     G + + + +    D +++D+ + ++ G+
Sbjct: 3   KILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+        V+G + G DDY+ KPF   ELV R++A+++R +
Sbjct: 63  ELCREIRR-NTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L +N     V+       L  KE++++  L+    +TL ++  +  ++ 
Sbjct: 122 VAASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +DV + +LR++          I TV G GY L 
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFR-IRTVRGLGYRLE 222


>gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957]
 gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           CFBP2957]
          Length = 222

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++     D G   ++  +    + ++LDL L    G E+
Sbjct: 5   ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 65  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 124 GAQPESL--LQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 182 RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRL 220


>gi|256850876|ref|ZP_05556265.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661087|ref|ZP_05862001.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|282932666|ref|ZP_06338079.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297205750|ref|ZP_06923145.1| response regulator [Lactobacillus jensenii JV-V16]
 gi|256615938|gb|EEU21126.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 27-2-CHN]
 gi|260548024|gb|EEX24000.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii 115-3-CHN]
 gi|281303176|gb|EFA95365.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|297148876|gb|EFH29174.1| response regulator [Lactobacillus jensenii JV-V16]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           IL++EDD ++A  +EL  K E +NV +   G + ++  K     +D I LDL L    G 
Sbjct: 5   ILMVEDDSSVAEMMELFFKKEQWNVDIARDGLEAVDKFKERPDYYDMITLDLNLPKKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R    S P+ +L+   S  D+V GL+ GAD+Y++KPF+   L+ARI+A+ RR+ 
Sbjct: 65  QVAKEVRAISESVPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALHRRAA 124

Query: 121 GHAQS---------LIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                          IVT  L ++   + V     +I  LT KE+ ++  ++ +     +
Sbjct: 125 LENNDEDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPKQVFS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 185 RDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEV--GPQIIQTVWGVGYKFDDS 236


>gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC
           BAA-895]
 gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895]
          Length = 219

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G +++N       + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++     I+V +  LR+KL +      +I TV G GY L
Sbjct: 181 WDEDVSSNTIEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216


>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 245

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED+  +A  IE  LK    +V V   G  G  + +   FD +ILD+ +  I G E
Sbjct: 24  KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 84  LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 243


>gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L S+ + +      +  IEL +  + D ++LDLGL  + G E
Sbjct: 7   RILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGGHE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +LR  R   +  PV ILS  +     V  L+ GADDY++KPF   ELVARIR  +R    
Sbjct: 67  LLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHKFQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + +  +GDLSV+L  + V+V+G  I L+ KEY ++ +L       LT    L  ++
Sbjct: 127 QQGEKPVFQSGDLSVDLVKRIVKVEGKEIKLSPKEYDILRILVQHAGKVLTHHFILKQIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              D  +V+ + V++ +LR+K+        YI T  G GY LR +
Sbjct: 187 --DDSTDVQYLRVYVRQLRQKIEKTPDQPRYITTETGVGYRLRVD 229


>gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
 gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
          Length = 237

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/236 (28%), Positives = 116/236 (49%), Gaps = 17/236 (7%)

Query: 1   MRI---LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M++   LL+ED+K +A ++E+ L+++ + V     G++G+E+ +  E    I+DL +  +
Sbjct: 1   MKVYTVLLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEVHLAIVDLMMPVM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++  LR  K   PV ILS  S   DK+ GL  GADDY++KPF   EL+AR+ + +R
Sbjct: 61  DGTTMIMKLRE-KYDFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQLR 119

Query: 118 RS------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           R                   +   G L +N   + V V G  + +T  E+++I LL    
Sbjct: 120 RYTKYLNLVKEGGEENKNDGIYTIGGLELNEHTRVVTVDGLPVKITPIEFKIINLLIKNP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E     +++         + V I  +R+K+   +    Y++ VWG GY +
Sbjct: 180 GRVYSSEEIYEKVWNET-AISTDTVMVHIRNIREKIELDSKNPKYLKVVWGVGYKI 234


>gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 237

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 8/224 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D++ALA  +   L+ + F  +V   G   +++ +  + D ++LDLGL  + G EV R
Sbjct: 11  VVDDEQALARLVAGYLERDGFETHVCHDGVGALQVLREVDPDVVVLDLGLPGLDGVEVCR 70

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR       V +L+  +   D + GL  GADDY++KPF+  EL+AR+  ++RR R    
Sbjct: 71  QLRTFS-DCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPRRTPG 129

Query: 125 SL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G L+V+ DA+ V V G  + LT  E+ ++  L+ R    L++   +  
Sbjct: 130 PAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRALIEA 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      +  ++DV +  +R+KL ++A  + ++ TV G GY +
Sbjct: 190 VWGAGWVGDEHLVDVHVLHVRQKLGDSAEQQRFVRTVRGVGYRM 233


>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
 gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
          Length = 221

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 123/223 (55%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IEDD+ +   I+  L ++ + V V   G +G+       FD I+LD+ + ++ GFE
Sbjct: 5   HILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS  
Sbjct: 65  VAKMIRSQS-NVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  +  V  +L V++DA  V V    I LT KE+++++LL   +   L +E  +  ++ 
Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E +IID  I  +RKKL        YI+T+ G GY + E
Sbjct: 184 YDYIGESRIIDTHIKNIRKKLDI-----PYIKTIKGIGYKIDE 221


>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 224

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK L   +E  LK EN+NV     G + + +   +  D II D+ +  + G+E 
Sbjct: 4   ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIMMPHMDGYEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR + I+ P+ +++   +IEDK RG   G DDY+ KP N +E++ R+ A++RRS   
Sbjct: 64  TEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIV 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +V G+++++ +  TV  +G  I L  KE+ ++  L        T++  ++ ++   
Sbjct: 124 NEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGMD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E + + +DV I +LR+K  + +  +  I TV G GY 
Sbjct: 184 AETDERTVDVHIKRLREKFGDFSEFE--IITVRGLGYK 219


>gi|328950115|ref|YP_004367450.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450439|gb|AEB11340.1| two component transcriptional regulator, winged helix family
           [Marinithermus hydrothermalis DSM 14884]
          Length = 224

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+ED++++   + L L+   F V       +G    +    D ++LD  L D PG  
Sbjct: 3   RVLLVEDEESVRVGLRLGLRQAGFTVLEAATAAEGWAQLEGC--DVVVLDWMLPDEPGIR 60

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            L  LR        PV +L+  ++  D+V GL  GADDY+ KP +  ELVAR++A++   
Sbjct: 61  FLERLRRTPRFEGLPVLMLTARAAEADRVEGLTRGADDYLVKPCSLPELVARLKALL--R 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   + ++    L ++L+   V V+G  + LT +E+ ++  L+       T+E  L  ++
Sbjct: 119 RAGRRRVVERPGLVLDLERMEVRVEGRPVELTRREFDLLAHLARHAGRVFTREELLEQVW 178

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   + +D  + +LR+KL +A     +IETV G+GY  +E  
Sbjct: 179 GPDFFGTARTVDQHVAQLREKLGDAPNAPRFIETVRGKGYRFKEGG 224


>gi|304405824|ref|ZP_07387482.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345067|gb|EFM10903.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 6/224 (2%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +ED+  +    + +L+ E F V      E+  EL      D +ILD  L D+ G +  + 
Sbjct: 8   VEDEVKILEEGKAILQKEGFAVQGFHSFEEAKELLMEGVADIVILDWMLPDVSGLDACKW 67

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-- 123
           + V  I  PV +++  +   DKV  L+ GADDYI KPF   EL+ARIR ++RRSR     
Sbjct: 68  V-VNTIGIPVIMVTARTDEFDKVLALEIGADDYIPKPFGMRELIARIRTVLRRSRKAPVE 126

Query: 124 ---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L+++ D   V ++G R+ LT  EY ++  ++       T+   +     
Sbjct: 127 TSSSQVLSFNELTIDTDKHEVRLRGERVSLTATEYNLLLAMASYPGRVFTRSQLIESSMG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  + +D  I  LRKK+        YI TV+  GY   E 
Sbjct: 187 ESYFGYERTLDSHIRNLRKKIEADPNNFEYILTVYAVGYKFGEP 230


>gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579]
 gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L]
 gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1]
 gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI]
 gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579]
 gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L]
 gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1]
 gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis
           BMB171]
 gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI]
 gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 221

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220


>gi|188590423|ref|YP_001919717.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|251779363|ref|ZP_04822283.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500704|gb|ACD53840.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
 gi|243083678|gb|EES49568.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ L+ EN  V+    G + +E+    +   I+LD+ +  + G   
Sbjct: 4   VLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEKIHVIVLDIMMPKLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    + P+ +LS      DK+ GL  GADDYI KPFN  ELVAR+++ +RR    
Sbjct: 64  CLKIRET-ENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++   DL ++  +K++ V+G  I +T  EY+++ LL+       + +     
Sbjct: 123 LNIEDEEQILTVKDLVIDTVSKSITVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D         + V I ++R+K+        YI+ VWG GY + + 
Sbjct: 183 VWDEPFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEKE 229


>gi|169343719|ref|ZP_02864718.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
 gi|169298279|gb|EDS80369.1| DNA-binding response regulator [Clostridium perfringens C str.
           JGS1495]
          Length = 232

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GIE+ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIEIFKEFNPTLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +  ++ G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
 gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43]
          Length = 235

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 112/228 (49%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  L   +   L    F     D G            DAI+LDL ++   G  
Sbjct: 7   RVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGEDGLA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A   TP+ +L+      D++ GL++GADDY++KPF   ELVAR+ A++RR+RG
Sbjct: 67  ICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRRTRG 126

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G L +N   + V   G  + L+ +E+ ++  +   +   L++   +  
Sbjct: 127 MRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRPLSRAQLIER 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 E   + +DV I +LR+ L + A     I+TVWG GYVL  + 
Sbjct: 187 ALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVLVSDG 234


>gi|283455806|ref|YP_003360370.1| response regulator of two-component system [Bifidobacterium dentium
           Bd1]
 gi|283102440|gb|ADB09546.1| Response regulator of two-component system [Bifidobacterium dentium
           Bd1]
          Length = 224

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSQTIRTVHGVGYAFEPPEQ 224


>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +D I+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|50083946|ref|YP_045456.1| two-component regulatory system response regulator [Acinetobacter
           sp. ADP1]
 gi|169634184|ref|YP_001707920.1| OmpR family response regulator [Acinetobacter baumannii SDF]
 gi|169797062|ref|YP_001714855.1| OmpR family response regulator [Acinetobacter baumannii AYE]
 gi|184157025|ref|YP_001845364.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213156532|ref|YP_002318193.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215484523|ref|YP_002326758.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|239501298|ref|ZP_04660608.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB900]
 gi|260551037|ref|ZP_05825242.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260555646|ref|ZP_05827866.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293609143|ref|ZP_06691446.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|301345629|ref|ZP_07226370.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB056]
 gi|301512784|ref|ZP_07238021.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB058]
 gi|301596295|ref|ZP_07241303.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB059]
 gi|332852151|ref|ZP_08433978.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332867550|ref|ZP_08437703.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332872600|ref|ZP_08440568.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
 gi|49529922|emb|CAG67634.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter sp. ADP1]
 gi|61224854|gb|AAX40744.1| BfmR [Acinetobacter baumannii]
 gi|169149989|emb|CAM87883.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii AYE]
 gi|169152976|emb|CAP02024.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii]
 gi|183208619|gb|ACC56017.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193076532|gb|ABO11188.2| two-component regulatory activator (OmpR family) [Acinetobacter
           baumannii ATCC 17978]
 gi|213055692|gb|ACJ40594.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988835|gb|ACJ59134.1| Transcriptional regulatory protein rstA [Acinetobacter baumannii
           AB307-0294]
 gi|260405985|gb|EEW99472.1| two-component system response regulatory system response regulator
           [Acinetobacter sp. RUH2624]
 gi|260410557|gb|EEX03855.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292829716|gb|EFF88078.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|322506924|gb|ADX02378.1| putative response regulator (activator) in two-component regulatory
           system (OmpR family) [Acinetobacter baumannii 1656-2]
 gi|323516791|gb|ADX91172.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325121077|gb|ADY80600.1| response regulator in two-component regulatory system with RstB
           [Acinetobacter calcoaceticus PHEA-2]
 gi|332729523|gb|EGJ60862.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013150]
 gi|332733967|gb|EGJ65112.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6013113]
 gi|332739129|gb|EGJ69988.1| transcriptional regulatory protein RstA [Acinetobacter baumannii
           6014059]
          Length = 238

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|271502259|ref|YP_003335285.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270345814|gb|ACZ78579.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 222

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALINSAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R      PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLGRWRRNNYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L ++
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTKD 219


>gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 241

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     Y FD  I+DLGL  I G 
Sbjct: 17  MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGLPGISGL 76

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 77  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 196

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V + +LR+KL  A G K  I+TV G GY+  E
Sbjct: 197 GDEERDPNVIEVLVGRLRRKLEGAHGFKP-IDTVRGLGYLFTE 238


>gi|152989684|ref|YP_001349576.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150964842|gb|ABR86867.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 236

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L+     V +   G            D ++LDL L    G  
Sbjct: 7   RILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RRS  
Sbjct: 67  ICRQVRPQ-FDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G L ++   +   +    I LT  E+ ++ LL+      L++E  
Sbjct: 126 PETGAPPLDSKRLAFGRLVIDNAMREAWLDEATIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N L     + + + IDV I ++R K+ +       I+TV  +GY+  
Sbjct: 186 FNALRGIEYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLFV 233


>gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 220

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+     V     G + +      E++ ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGSGVEEGLRDAGMTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA++RR+ 
Sbjct: 61  ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DLSV+    TV   G R  LT +E  ++  L   + T L++      LY 
Sbjct: 121 GRSVETIEYQDLSVDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   I+V +  LRKKL     G   I T+ G GYV+ + +
Sbjct: 181 WQEEVESNAIEVHVSNLRKKL-----GPGLIRTIRGVGYVVEKTS 220


>gi|237747235|ref|ZP_04577715.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
 gi|229378586|gb|EEO28677.1| two component transcriptional regulator [Oxalobacter formigenes
           HOxBLS]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL +ED+  +   ++L L++EN+ V+  D  + G+        D ++LDLGL D  G 
Sbjct: 5   IRILTVEDESNIRRFVKLALENENYEVFEADGVKRGLIEAATRRPDLVVLDLGLPDGDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E +  LR    S P+ +LS  S+  DK+  L +GADDY+ KPF   EL+AR+RA +RR +
Sbjct: 65  EFITDLRAWS-SIPIIVLSARSNENDKISALDAGADDYLVKPFGAGELLARVRAQLRRQQ 123

Query: 121 G--HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I   D+ ++   + VE  G  IHLT  EY+++  ++ + +  +T +  L  +
Sbjct: 124 PGTPNEPFIRFSDVCIDPVRRVVEKNGAPIHLTPIEYRILIFMTSQPDRVITHQQLLKAI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      ++  I V +  LRKK+   A    ++ T  G GY    
Sbjct: 184 WGPGHTEDMHYIRVHMANLRKKIEENASMPRHLITEAGIGYRFVP 228


>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|332284996|ref|YP_004416907.1| two component system response regulator [Pusillimonas sp. T7-7]
 gi|330428949|gb|AEC20283.1| two component system response regulator [Pusillimonas sp. T7-7]
          Length = 244

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 8/213 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
             + FNV+V +  ++  +L +   FD ++LDL L    G  + R LR    +TP+ IL+ 
Sbjct: 30  TEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDNTPIIILTA 89

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDL 132
            +   D++ GL+ GADDY+SKPFN  EL+AR+ AI+RR        +       I  G  
Sbjct: 90  KAEEIDRIVGLEMGADDYLSKPFNPRELLARVNAILRRRGTEEHPGAPSQENESIEFGPY 149

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            +NL  +T+     ++ +T  E+ ++++ +      L+++  +        E   + +DV
Sbjct: 150 VLNLSTRTLTRNNEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDV 209

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            I +LRK +        +I+TVWG GYV   + 
Sbjct: 210 QISRLRKLVEPNPSKPVFIQTVWGLGYVFVPDG 242


>gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 214

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT++  +  ++    
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|222475446|ref|YP_002563863.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
 gi|222419584|gb|ACM49607.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Florida]
          Length = 292

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 131/232 (56%), Positives = 162/232 (69%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDI- 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+      
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234


>gi|295107805|emb|CBL21758.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD+ +  +IE+ L  E  ++     GE  I   +    D +I+D+ +  + G   
Sbjct: 4   ILVCDDDRDIVEAIEIYLTQEGHHILKAYDGEQAIRALQSNPVDLLIIDVMMPKLDGIRA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K + P+ ILS  S   DK+ GL  GADDY++KPFN  ELVAR+++ +RR    
Sbjct: 64  TLKIRE-KNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQL 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++  TG L ++ D K V V G  + LT  EY+++ LL   +    +      
Sbjct: 123 GAAAEKRGNIYETGGLMIDDDRKEVTVDGEVVKLTPIEYRILLLLVKNQGRVFSINQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I  +R+K+        Y++ VWG GY + +
Sbjct: 183 SIWEEEAIAADNTVAVHIRHIREKIEINPKEPRYLKVVWGLGYKVEK 229


>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
 gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
 gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++EL L++  + V     G   + L      D I+LDLGL D+ G +
Sbjct: 3   RVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR      PV +LS   S ++KV+ L +GADDY++KPF  +EL+AR+RA VRR+  
Sbjct: 63  VLRGLRSWS-RVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEP 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            A       +   D +V+L AK V  QG  + LT  E+ ++E+L       ++++  L  
Sbjct: 122 AAPDEEAEVVDAADFTVDLAAKRVHRQGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      E   + V++ +LR+KL        +  T  G GY   
Sbjct: 182 VWGPSYGTESNYLRVYMAQLRRKLETDPAHPRHFITEPGMGYRFE 226


>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
 gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum B str. Eklund 17B]
          Length = 235

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDKA+ + I + L++EN+  +V + GE  I     Y  D +ILDLGL D+ G E
Sbjct: 5   QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR   
Sbjct: 65  IIKRIRTWS-NVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G   +L + GDL ++  A+ V ++   +HLT  EY++I LL+      LT    L
Sbjct: 124 VNSGQGKNSNLFINGDLKIDYAARCVFIKDEEVHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + VF+  LRKK+        YI+T  G GY +
Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRM 229


>gi|168208802|ref|ZP_02634427.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|170713070|gb|EDT25252.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 232

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSKVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|329850363|ref|ZP_08265208.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
 gi|328840678|gb|EGF90249.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis
           biprosthecum C19]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  +   +   L ++++ V      ++G++     + D ++LDLGL D  G 
Sbjct: 1   MKILIIEDEGDIRRYLRATLTAQDYAVLEAATAKEGVQNLTLNQPDLVLLDLGLPDQDGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           + +RA+R      P+ +LS      DK+  L+SGADDY++KPF   EL+ARI+  +R   
Sbjct: 61  DFIRAVREWS-QVPIIVLSAREQEADKIEALESGADDYLTKPFAPRELLARIKVALRHAA 119

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R  G    +     L ++L A+ V + G  +HLT  EY+++  L       LT    LN 
Sbjct: 120 RDAGPRMEIFERNGLRLDLSARRVWLDGEDVHLTPIEYRLLTALIQHPGKVLTHAQLLNA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++  R   +   + +    LR+KL +      +I T  G GY   +
Sbjct: 180 VWGRRSTEQNHYLRIHTQHLREKLKDDPLSPRFILTEPGIGYRFAD 225


>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ AL  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K  +V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda]
          Length = 219

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +   I+  L    F +     G+ G+   +   +DA+ILDL L  I G 
Sbjct: 1   MRVLLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R A  + PV IL+   ++E +V GLQ GADDY+ KPF   E+ AR++A++RR+ 
Sbjct: 61  EILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+L+  G +S++  + T  + G  + L  KE+ ++ELL       L + +    LY 
Sbjct: 121 GQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V I  LR+KL     G ++I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHIHHLRRKL-----GSHFIRTVHGVGYTL 216


>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
 gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
          Length = 228

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K+LA  +EL L+ E +   V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++RR   
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDL 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   D+ +  + + V+     I+LT +EY+++ LL    N   ++E  L
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++   D  E  ++DV+I  LR K+ + AG  +YI+TV G GYV+R
Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227


>gi|256545102|ref|ZP_05472468.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170]
 gi|256399143|gb|EEU12754.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   +++ L+   FN+     GE+ ++L    E    ILD+ L  I G+E
Sbjct: 4   KILICDDEEHIRQFMKINLEYAGFNIIEAGSGEEALKLADEEEPLVCILDIMLPGISGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V  ++R       + ++S  S   DK+ GL+ G DDYI KPFN +EL+ R+++++RR + 
Sbjct: 64  VCDSIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVKSLMRRVKF 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++++  G   ++L ++        I +T  E+ +++   L K   +++   
Sbjct: 124 IDVEKEEKNENVLEDGVFKLDLYSRNFYKNNIEIDVTPTEFTILKNFILNKGKAMSRMEI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   +      + KI+DV I ++R K+        YIETVWG GY  R
Sbjct: 184 MKDTWGDNYSTDTKIVDVNIRRIRAKIEENPARPEYIETVWGTGYRWR 231


>gi|238855525|ref|ZP_04645829.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|260665399|ref|ZP_05866246.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|282934342|ref|ZP_06339611.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
 gi|313471862|ref|ZP_07812354.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|238831858|gb|EEQ24191.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Lactobacillus jensenii 269-3]
 gi|239529223|gb|EEQ68224.1| DNA-binding response regulator ResD [Lactobacillus jensenii 1153]
 gi|260560667|gb|EEX26644.1| phosphate regulon transcriptional regulatory protein PhoB
           [Lactobacillus jensenii SJ-7A-US]
 gi|281301592|gb|EFA93867.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Lactobacillus jensenii 208-1]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 120/234 (51%), Gaps = 14/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           IL++EDD ++A  +EL  K E +NV +   G + ++  K     +D I LDL L    G 
Sbjct: 5   ILMVEDDSSVAEMMELFFKKEQWNVDIARDGVEAVDKFKERPDYYDMITLDLNLPKKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + +R    S P+ +L+   S  D+V GL+ GAD+Y++KPF+   L+ARI+A+ RR+ 
Sbjct: 65  QVAKEVRAISESIPIIMLTARDSESDQVLGLEIGADNYVTKPFSPIALIARIKALHRRAA 124

Query: 121 GHAQSL---------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLT 170
                          IVT  L ++   + V     +I  LT KE+ ++  ++ +     +
Sbjct: 125 LENTDNDRKAKGDFDIVTNTLKISKIRREVYFLDKQIDGLTPKEFDLLYTMAQKPKQVFS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++  L  ++      E + +D  I KLR+KL     G   I+TVWG GY   ++
Sbjct: 185 RDKLLELVWGYEYYGEERTVDAHIKKLRQKLEEV--GPQIIQTVWGVGYKFDDS 236


>gi|183981321|ref|YP_001849612.1| two-component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium marinum M]
 gi|183174647|gb|ACC39757.1| two-component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium marinum M]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|182623973|ref|ZP_02951761.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177910866|gb|EDT73220.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 232

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSKVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+AL   +   L+   + V V + GE  +        D ++LD  L  + G +V
Sbjct: 16  ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   A  + P+ +L+  +   D +RGL  GADDY++KP + E L ARIRA++RR+ 
Sbjct: 76  CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRA- 134

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ ++   D++++  A   E  G ++ L   EY+++E          ++E  L  +++
Sbjct: 135 PPAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVWE 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                E + +DV I +LR  + N  G  + + TV   GY L + 
Sbjct: 195 RGVHVEPRTVDVHIRRLR-LILNGPGEADIVRTVRAAGYALDDP 237


>gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199]
 gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199]
          Length = 246

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++ED+  +   +   L+ E F V     GE+ + +    + D I+LD  L  + 
Sbjct: 15  MKPLILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLS 74

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G EV R LR    +   P+ +L+      D++RGL SGADDY++KPF+  EL+AR+RA++
Sbjct: 75  GIEVCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELIARVRAVL 134

Query: 117 RRSRGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           RR+R   +  ++  GDL ++L A  V+     IHL   E++++           ++E  L
Sbjct: 135 RRARPSTEDEMLHYGDLHMDLAAHRVKRSERDIHLGPTEFRLLRHFLEHPGRVFSREQLL 194

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + ++      E + +DV I +LRK L NA    + I TV   GY L
Sbjct: 195 DTVWGPDVYVEPRTVDVHIRRLRKAL-NAEQDDDVIRTVRSAGYAL 239


>gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638]
 gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++  +   +   G+  +   +    + I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAAGYAPSLISHGDQVLPYVRQTPPNLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-EVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HAQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  ++  +  L V+        +   + LT  E+++++ LS       ++E  LN LY
Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNQLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL      +++I  V+G GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWEADA 236


>gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 228

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDDK +A  +   L SE + V + +  +  +E  K   FD  +LDL L D  G+
Sbjct: 1   MKVLVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTLPDGNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   ++  +   PV  L+      + VRGL  GADDYI+KPF   EL++R+++ +R  +
Sbjct: 61  EICEYVKENQ-DAPVIFLTACDDEINVVRGLDMGADDYITKPFRIRELISRMKSSLRHYQ 119

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G++ VN     V      + LT  EY+++      +   L++   L  +
Sbjct: 120 KEPNLSDKVRVGNVVVNTKLAKVYKGTEEVMLTALEYRLLLAFINNRGQVLSRNQLLEGI 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +      + V+I +LR+KL + +     IETV G GY +
Sbjct: 180 WDLDGNFINDNTLSVYIKRLREKLEDDSQNPKVIETVRGLGYRM 223


>gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 220

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L      V     G+      +   +D +ILDLGL  + G 
Sbjct: 1   MRVLLVEDDRLIGSGVEDGLIEAGMTVDWACDGKHAQLALETTPYDLVILDLGLPRVSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R  +  TPV +++   ++ D+V GL +GADDY+ KPF+  ELVAR RA+VRRS+
Sbjct: 61  ELLDWIRKRRDHTPVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I  GDL V+ +  TV     RI L+ +E  ++  L   +   L++    + LY 
Sbjct: 121 GRSTDTIEYGDLLVDPERLTVMRGSERIALSSRECALLVELLANQGRPLSRARLQDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E E   I+V I  LRKKL     G   I T+ G GYV+ +
Sbjct: 181 WNEEIESNAIEVHISNLRKKL-----GAQLIRTIRGVGYVVEK 218


>gi|111023287|ref|YP_706259.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226365794|ref|YP_002783577.1| two-component response regulator MtrA [Rhodococcus opacus B4]
 gi|110822817|gb|ABG98101.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|226244284|dbj|BAH54632.1| two-component response regulator MtrA [Rhodococcus opacus B4]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F+ YV   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTQALTAVRETRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTED 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   D+ +++ A  V      I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGEELISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 227

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 131/226 (57%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+ LA  +  ML  E++ + V   GE+G++L     ++  I+D  L    G 
Sbjct: 1   MRLLIIEDDQRLARLMRRMLAEEHYTIDVAHDGEEGLDLALQGVYEIAIVDWMLPSRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            + RA+R A+    + +L+    +ED+V+GL SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  TICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRFT 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +  G++ ++L + T       + LT  E+ ++E L      +L+++  L+++
Sbjct: 121 PSGSDTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQILDYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + ++ ++DV+I  LR+KL NA G  + I TV G GY L  +
Sbjct: 181 WSYERDVQIALVDVYISYLRRKL-NAPGESDPIMTVRGVGYRLEAS 225


>gi|298486538|ref|ZP_07004598.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159015|gb|EFI00076.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + GH + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|269796463|ref|YP_003315918.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269098648|gb|ACZ23084.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +   L  E ++V     G  G+        D ++LDL L  + G E
Sbjct: 3   RILVVEDEESYREPLTYQLTREGYDVVAVADGAAGLAAYDEGGADLVLLDLMLPGLSGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+      DKV GL+ GADDY++KP++  EL+AR+RA++RR + 
Sbjct: 63  VCRELRQRG-DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRQP 121

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A  L+ +G + +++D   V V+G  + L  KE+ ++E L       LT+   
Sbjct: 122 AAAVDEDEADELVGSGPVQMDVDRHVVTVRGELVSLPLKEFDLLEFLLRNAGRVLTRGQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++ ++      + K +DV + +LR K+         + TV G GY L ++
Sbjct: 182 IDRVWGSDYVGDTKTLDVHVKRLRAKIETDPASPELLLTVRGLGYKLVDD 231


>gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 223

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ +   I+  L    FNV     G +G+       +DA++LDL L +I G 
Sbjct: 1   MRILVIEDDRLIGDGIKAGLIKLGFNVDWFTQGREGMNALTSAPYDAVLLDLSLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV +++   ++E +V+GLQ GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARLQALIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q ++  G ++++L ++ V   G  + L  +E  ++EL  +     LT+      LY 
Sbjct: 121 GQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRNQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V I  LR+KL N      +I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGNH-----FIRTVHGVGYTL 216


>gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L++ ++   +   G+  +   +    D I+LDL L    G  
Sbjct: 12  RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLMLPGTDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR + 
Sbjct: 72  LCREIRRFS-DIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q       L ++        +G  + LT  E+++++ LS       ++E  LNHLY
Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D       + ID  I  LR+KL +    +++I  V+  GY    +A
Sbjct: 191 DDYRVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWEADA 236


>gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
 gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75]
          Length = 219

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 235

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 14/233 (6%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL+++DD+ +   I ++L  E F V+        + + +    D IILD+ +  
Sbjct: 4   MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK-PVDLIILDIMMPG 62

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             GFE+   +R    + P+  LS  +   DK  G   G DDY+ KPF++ EL+ RI+A++
Sbjct: 63  RNGFELCTEIRKI-TTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALL 121

Query: 117 RR-------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR       +     + I  GDL+V+ +   V + G ++ LTG EYQ++  L   +   L
Sbjct: 122 RRFFVYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVL 181

Query: 170 TKEMFLNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      H++     P     I V I  LR+KL        YI T+WG+GY +
Sbjct: 182 SAREIYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDLQKPQYIRTIWGKGYYI 234


>gi|167844478|ref|ZP_02469986.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei B7210]
          Length = 240

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 123/236 (52%), Gaps = 3/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
             +E     I+V++ +LRKK+  +      I TV G GY L + A     +    A
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAPAGASDAPNAA 236


>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
 gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
           [Oceanithermus profundus DSM 14977]
          Length = 235

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD  +A  ++  L    + V     G  G+   +      I+LDLGL D+ G E
Sbjct: 15  RILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGSE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  +      P+ +L+   ++E KV+ L  GADDY++KPF+  EL+ARI+  +RR  G
Sbjct: 75  IARRAKQHG-DVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRR--G 131

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   GDL + ++ + V   G  + L+ KE+ ++ELLS R     +++    H++  
Sbjct: 132 EGGEVRRVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGK 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             E E  ++DV +  LR KL  A G   Y+ TV G GY LR+ A
Sbjct: 192 PLETESNVVDVHVANLRAKLREA-GAYGYLRTVRGVGYALRKPA 234


>gi|302528854|ref|ZP_07281196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302437749|gb|EFL09565.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A SI+  L +E F+V V   G   +E       D ++LD+ L    G E
Sbjct: 7   RVLVVEDDLTIAASIDARLSAEGFSVTVAHDGPAAVEAEAATSPDLVVLDVMLPGFDGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           V R +  A+   PV +L+  +   D + GL  GADDY++KPF+   L ARI+A++R   R
Sbjct: 67  VCRRI-QARRPVPVLMLTARADETDLLVGLGVGADDYLTKPFSMRVLSARIQALLRRVER 125

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S   A+  IV GDL +++  + V   G    LT  E+ ++   + R      +E  L+ +
Sbjct: 126 SSAAAEERIVLGDLEIDIAERRVRRGGEPAQLTPIEFDLLVHFARRPRAVQPRERLLSEV 185

Query: 179 YDGRDEPE---VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +D   +      + +D  I  LR+KL         I TV G GY L   A
Sbjct: 186 WDWDVQATGAGTRAVDSHIKALRRKLGAD-----LIRTVHGVGYALEVPA 230


>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 231

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L  ++ + L +  F V     G + +      +   ++LDLGL D+ G  
Sbjct: 6   RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV +LS  S   DKV  L +GADDY++KPF  EE +AR+RA VRR   
Sbjct: 66  VLEGLR-GWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGAV 124

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +      ++  G   V+L AK V   G RIHLT  E++++E+L   +   ++++  LN 
Sbjct: 125 SSGLPEVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILNS 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      +   + V++  LR+KL +      ++ T  G GY   
Sbjct: 185 VWGPTYLGQSNYLRVYLASLRRKLEDDPVHPRHLITEAGMGYRFV 229


>gi|224541447|ref|ZP_03681986.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525639|gb|EEF94744.1| hypothetical protein CATMIT_00609 [Catenibacterium mitsuokai DSM
           15897]
          Length = 238

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K +   IE+ L  E ++V         +   + ++ D +ILD+ +  + G +
Sbjct: 12  RILVIDDEKEICDLIEIYLSQEGYHVEKRYNAYTLLRDLEKFKIDLVILDMMMPGVDGIQ 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L  +R  K + PV  +S  ++ +DK+ GL  GADDYI+KPFN  ELVAR+++ +RR + 
Sbjct: 72  ALEMIRE-KYNIPVIFVSAKTADQDKIEGLLKGADDYIAKPFNAMELVARVKSQLRRYQV 130

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   S+I   DL ++ + K V V    + +T  EY+++ LL+    T  + E   
Sbjct: 131 YSKPIGVDNSIIQANDLLIDTNKKMVSVDNRPVAVTKIEYEILVLLASHPGTVFSTEDIY 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I KLR+K+        +I TVWG GY   
Sbjct: 191 TKIWHEEATHANNTIMVHIRKLREKIERQPRTPRHIITVWGIGYKFE 237


>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
 gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
          Length = 243

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  ++E  L  E + V     G  G+     +E DA++LD+ +  + G  
Sbjct: 20  RILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPVLDGLG 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR     TP+ +L+ + S+ ++V GL++GADDY+ KPF  +ELVAR+RA++RR+  
Sbjct: 80  VCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAAP 139

Query: 122 HAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                   G  DL ++   +T       +  +  E  ++ELL       L +E+ L  ++
Sbjct: 140 APGGAAALGFADLVLDPATRTGRRGSRPLEFSRTEAALLELLVRHAGQVLPRELILELVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                P+   + V+I  LR+KL  A G    + TV G GY L
Sbjct: 200 GQDFGPDSNSLAVYIGYLRRKLE-AGGEPRLVHTVHGVGYRL 240


>gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato K40]
          Length = 225

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +++     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DSSVAFKPIETVRGMGYLFNE 222


>gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
 gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149]
          Length = 226

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++          G   +E   F   + I+LD+ L    G E+
Sbjct: 2   IYCVEDDDNIRELVIYTLETTGLKAKGFAEGTAFMEALAFDTPELILLDIMLPGEDGLEL 61

Query: 63  LRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ L+        PV +++   +  DKV GL SGADDY++KPF   ELV+RI+A++RRS 
Sbjct: 62  LKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLRRSG 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   Q ++    +SV++    V+V G  + LT KE++++E L   +N  LT++  L  ++
Sbjct: 122 RVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLEDIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E + +DV +  LR+KL       + I+TV G GY +
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGEKG---DIIKTVRGVGYRI 220


>gi|126699068|ref|YP_001087965.1| two-component response regulator [Clostridium difficile 630]
 gi|115250505|emb|CAJ68329.1| Two-component response regulator [Clostridium difficile]
          Length = 234

 Score =  252 bits (644), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++  I+  L+ E F++ ++     G E+    E+  I+LD+ L D  G+E
Sbjct: 3   KLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR   
Sbjct: 63  LCQYIRGFS-QVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  GDLS+      V      I LT  EY+++ +L   KNT L++   L  L
Sbjct: 122 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 181

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   D      + V+I +LR+K+ +      YIETV G GY  
Sbjct: 182 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKW 225


>gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
 gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
          Length = 257

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 132/226 (58%), Gaps = 1/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L  SI   L+ + + V + D G + +E+ +  ++D I+LDL L  + G +
Sbjct: 30  KILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGLD 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR     T V ILS  SS+ D++ GL +GADDY+ KPF   EL ARIR ++RR   
Sbjct: 90  LLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRREYT 149

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H ++ +V+G+L ++  ++ V  +   ++LT KE  ++E L  R  T ++ E  L+H +D 
Sbjct: 150 HGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAWDS 209

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +P    + V I  +RKKL    G  + I    G GY L+E++ D
Sbjct: 210 NVDPFSNSVRVHIFSVRKKLREVLGY-DPISNKVGEGYYLKEDSDD 254


>gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system
           with QseC [Escherichia coli O127:H6 str. E2348/69]
 gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299]
 gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82]
          Length = 219

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|262369588|ref|ZP_06062916.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
 gi|262315656|gb|EEY96695.1| two-component system response regulator protein [Acinetobacter
           johnsonii SH046]
          Length = 220

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 131/224 (58%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD + A SI+  L+ + ++V   + G+  I   + + +D ++LD GL    G 
Sbjct: 1   MRILLAEDDASQAESIKTWLEMDGYSVDWVERGDHAILAIEQHHYDCVLLDRGLPHATGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R   +STPV  L+   SI D+V GL  GA+DY+ KPF+ EEL ARIR  +R+ +
Sbjct: 61  DILLKVRGKNLSTPVIFLTARDSIRDRVEGLDLGANDYLVKPFSLEELSARIRLQLRQQQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++   ++ ++  AK+V   G  ++LT KE+Q++  L L+    +T+E     LY 
Sbjct: 121 HSSSQVLSYANIQLDPQAKSVTQNGQAVNLTAKEFQILHKLMLKPEYVVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE E   I+VFI +LRKKL     G + I+T+ G GY + ++
Sbjct: 181 WGDEIESNAIEVFIYQLRKKL-----GSHCIKTIRGLGYRMNQD 219


>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 229

 Score =  251 bits (643), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYIITVVRTGYKFEGNV 229


>gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673]
 gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163]
 gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673]
          Length = 227

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       +   +     FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNLFDLALVDIALPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIRA +R+   
Sbjct: 63  VCTEIKE-RYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQER 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
             Q+  V G L V+  +  V   G  I L+  EY+++ +        +T+   L+ L+D 
Sbjct: 122 AGQAFEVCG-LCVDTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRL 221


>gi|319936869|ref|ZP_08011281.1| two-component system response regulator [Coprobacillus sp. 29_1]
 gi|319808137|gb|EFW04709.1| two-component system response regulator [Coprobacillus sp. 29_1]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+I+D+K +   IE+ L  E ++V         +E  + Y+ D +ILD+ + +I G +
Sbjct: 5   HILVIDDEKEITDLIEIYLSQEGYHVEKRYNALTLLEDIRTYQIDLVILDVMMPEINGIQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ +R  K + PV I+S  ++  DK+ GL +GADDY+SKPFN  ELVAR+++ +RR + 
Sbjct: 65  ALKMIRE-KYNIPVIIVSAKTADNDKIEGLLTGADDYVSKPFNAMELVARVKSQLRRFQV 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +  +I   DL ++   K+V +    + LT  EY+++ LL+ +  T  + E   
Sbjct: 124 FNKPINDSSHIIEASDLIIDTQKKSVTLDNQSLALTRIEYEILVLLASQPGTVFSIEDIF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++  +       I V I KLR+K+        +I+TVWG GY  
Sbjct: 184 EKIWHEKSTNSNNTIMVHIRKLREKIERQPRNPRHIKTVWGIGYKF 229


>gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
 gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix
           DNA-binding domain) [Phenylobacterium zucineum HLK1]
          Length = 249

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L    + V       +   + +    D I+LD+ L    G  
Sbjct: 17  RILMVDDDPGIRDVVSDFLGRHGYKVETAADAPEMERVLERGPVDLIVLDVMLPGEDGLA 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L  A  + P+ +LS M    D++ GL+ GADDY++KP N  EL+AR+RA++RR+  
Sbjct: 77  ICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRRAEQ 136

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +        ++L  + +   QG  ++L+  E+ ++     R    LT++  L
Sbjct: 137 RTNGGALGAGCEFAGWRLDLVRRELRSPQGVVVNLSSGEFSLLRAFVERPQRVLTRDQLL 196

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   +   + IDV I +LR+KL +  GG + I T+   GY+     K
Sbjct: 197 EFARGPDSDAFDRAIDVQISRLRRKLDDGGGGHDLIRTIRNEGYMFTAKVK 247


>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
 gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
           BH72]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  +A  I   LK   + V     G +         FD +ILDLGL  +PG 
Sbjct: 1   MRILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K + PV IL+    +ED+VRGL +GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G+LS +   + V++ G  + L+ +E  ++E+  LR    ++K+  ++HL  
Sbjct: 121 GQPR-CIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +E     I+V++ +LRKKL  +      I TV G GY L 
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEASG---VRIVTVRGLGYCLE 218


>gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           RIL++ED+  +A  +   L+   F       G   +         D  +LD+ L  + G 
Sbjct: 7   RILVVEDEPDIADVVLDYLRHSGFEAEHLAEGPAALARLTGPTPPDLTLLDIMLPGVDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR  R      P+ +L+      D++ GL+ GADDYI KPF+  E+VAR+R ++RRS 
Sbjct: 67  EVLRQARR-HTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H         L ++     V ++G  + LT +E+++++ L+       ++   L+  YD
Sbjct: 126 AHPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185

Query: 181 GRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAK 226
              +   + ID  I  LR+KL         +I +V+G G+ L    +
Sbjct: 186 DTLDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLEPPTE 232


>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 223

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 242

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  N     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 140 AQ--IQYHGILWNEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 237


>gi|49081966|gb|AAT50383.1| PA1157 [synthetic construct]
          Length = 237

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L+     V +   G            D ++LDL L    G  
Sbjct: 7   RILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RRS  
Sbjct: 67  ICRQVRPQ-FDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G L ++   +   + G  I LT  E+ ++ LL+      L++E  
Sbjct: 126 PEAGAPAADSKRLAFGRLVIDNAMREAWLDGTTIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N L     + + + IDV I ++R K+ +       I+TV  +GY+  
Sbjct: 186 FNALRGIEYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLFV 233


>gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 272

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 50  RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 271


>gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239]
 gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L S  F     +  +           + ++LD+ L    G ++
Sbjct: 2   IYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+  +     P+ +++   +  +KV+ L  GADDY++KPF   ELV+R+RA++RRS 
Sbjct: 62  LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRSS 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             AQ      ++  G +S+NL    V V G  + LT KEYQ++E L  +     +++  L
Sbjct: 122 RSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++      E + +DV I  LRKKL  AA    YI+TV G GY 
Sbjct: 182 DSIWGYSFHGETRTVDVHIRTLRKKLGEAA---KYIKTVRGVGYK 223


>gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii]
          Length = 222

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 121/215 (56%), Gaps = 5/215 (2%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             +++  L    + V     GE      K   F+ IILDLGL  + G   L+A+R     
Sbjct: 13  GDAVKAGLTQFGYIVDWLKDGEAARAAVKSESFELIILDLGLPRLSGLAFLQAIRHDDNR 72

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDL 132
           TPV IL+   S+ED+V+GL +GADDY++KPF+  EL AR+RA+VRRS+G A +++   ++
Sbjct: 73  TPVIILTARESVEDRVKGLDAGADDYMTKPFDLNELSARVRALVRRSQGRADAVLQYRNI 132

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
           +++  A +V V    +++  +E+ +++ L       L++E  +  +Y   ++ +   ++V
Sbjct: 133 TLDPAAHSVYVDDVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYGWDEDVDSNALEV 192

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            I  LRKKL       N+I T+ G GY++ +N  +
Sbjct: 193 HIHNLRKKL-----NANFIRTIRGVGYMVEKNESN 222


>gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505]
          Length = 219

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 122/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  +E     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ ++  K   PV IL+   SI+DKV+GL  GADDY++KPF+  EL AR+R   RR  
Sbjct: 61  QVLKYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRIN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD+ ++  A TV++ G  + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E     I+V I  LRKK  +      +I+T+ G GYV
Sbjct: 181 WGEEVGSNAIEVHIHHLRKKFPSD-----FIKTLRGIGYV 215


>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 242

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD AL   +   L    F V     G+  + +      DA++LD+ +  I G +
Sbjct: 9   RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      PV +LS +  + D++ GL +GADDY+ KPF+  EL  R+RA++RR R 
Sbjct: 69  VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRP 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    + ++ DA+TV   G  + LT +E+ ++E+L       LT++  L+ ++  
Sbjct: 129 VPHGVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWGY 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +     +D  +  LR+KL         + TV G G+ LR
Sbjct: 189 DFQVRSDAVDTVVSYLRRKLEAD-DRPRVLHTVRGVGFALR 228


>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 133/225 (59%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V +   GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTKQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|56417080|ref|YP_154154.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
 gi|56388312|gb|AAV86899.1| transcriptional activator protein [Anaplasma marginale str. St.
           Maries]
          Length = 290

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 131/232 (56%), Positives = 162/232 (69%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDI- 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+      
Sbjct: 1   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 61  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 232


>gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 127/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L +   +DAI+LD+GL  + G 
Sbjct: 1   MRLLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL + R A   TPV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V+G  + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LRKKL         I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKLDCD-----VIQTVRGLGYLL 216


>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V     G++ + L K  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTSG-VPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   +    +I TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKS---KHITTVVRTGYKFEGN 228


>gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
 gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+ +L   I+  L  E +NV   D  ++  +     + D IILD+ L D  G
Sbjct: 1   MKSILLVEDNISLNRGIQFSLMKEGYNVIAIDSIKEAQQKLSKEKIDLIILDVNLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+
Sbjct: 61  FDYCLHIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRT 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  ++I + D+   ++   VE     I L+  E ++++         L+KE  L +L
Sbjct: 120 SKDSDFNIIQSKDIVFYINEMKVEKYEKEIFLSKTELKLLQYFMKNYQKILSKEQILENL 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +      + V I ++R+K+        YI+T+ G GYV +E
Sbjct: 180 WDIDGEFINENTVAVNIRRIREKIEEIPSKPEYIQTIRGIGYVWKE 225


>gi|163855203|ref|YP_001629501.1| transcriptional regulator [Bordetella petrii DSM 12804]
 gi|163258931|emb|CAP41230.1| Probable transcriptional regulator [Bordetella petrii]
          Length = 233

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 7   KLLVVDDDPALRQLLADYLNRHGYDTLLAPDANDLAARIARYAPDLLVLDRMLPGGDGAD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 67  ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +  G    +   + +   G  + LTG E  ++E L       L++E  L  
Sbjct: 127 PSALTKDAPVSFGPFVFDPAMRQLLRDGEPVKLTGGEINLLEALVRNAGKPLSRERLLAL 186

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D    E   + ID+ I +LR+ + +      +I+TVWG GY    
Sbjct: 187 ARDDDSGERNDRAIDIAILRLRRAIEDDPKQPRWIQTVWGIGYRFSP 233


>gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           LR LR    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R+    
Sbjct: 67  LRELREWS-AVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++     G L+V+   + V ++G  + LT KEY ++ LL+      +T++  L  ++ 
Sbjct: 126 GGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + + +  LR+KL +      +I T  G GY L   
Sbjct: 186 PTHAEDTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRLVAP 229


>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
 gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
           B1551]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+K++A ++    K E + V     GE+ +E    +  D +ILD+ +  + G+E
Sbjct: 4   RILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLTGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L   +    + +L+  + I DKV GL+ GADDY++KPF+  ELVAR +A+VRR   
Sbjct: 64  VCRKL-ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +        I  G + VNL  +T+ V    + LT KE+ +I LL        T+E  L+ 
Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++        + +D+ + +LRKK+  A      ++TV+G GY 
Sbjct: 183 VWGMDYAGGTRTVDIHMQRLRKKVGEA--EPYLLQTVYGVGYK 223


>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
 gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
           johnsonii SH046]
          Length = 236

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 109/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  +   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGG 60

Query: 58  -PGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     +  I    L ++  ++ V    + + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKSIDANGLILDPVSQRVSFGNNFLDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L   A    +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEPYAAD-RFVQTVRGTGYRFSTRA 231


>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 53/227 (23%), Positives = 110/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L  + + V     G++ + + + +E   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123

Query: 123 -----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  ++   + ++  ++T  +    I LT  E++++  L   +   +T+E  +  
Sbjct: 124 VISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLITK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + I+  I  LR KL   A   N+I TV   GY    +
Sbjct: 184 IWGYEFAGDDRTINSHIRNLRHKLGKKA---NHIVTVVRAGYKFEGD 227


>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 223

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|329571904|gb|EGG53582.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Enterococcus faecalis TX1467]
          Length = 209

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/208 (32%), Positives = 113/208 (54%), Gaps = 9/208 (4%)

Query: 28  YVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDK 87
             ++ G++G EL    ++D IILD+ L  + G E+ +ALR  KI TP+ IL+      DK
Sbjct: 2   TTSEDGKNGFELALSNQYDFIILDVMLPGMDGLEITKALRREKIDTPILILTAKDEQVDK 61

Query: 88  VRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH---------AQSLIVTGDLSVNLDA 138
           + GL+ GADDY++KPF+  E++AR++AI RR +            ++ +V G++ V+   
Sbjct: 62  IIGLEIGADDYLTKPFSPREVLARMKAIFRRLKPTTTEPLQEDTPKAPLVIGEIRVDEQN 121

Query: 139 KTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLR 198
             V V+   I LT KE++++     RK+  + +E  L  ++      + +I+DV I  LR
Sbjct: 122 YEVFVRNQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQYDFAGQSRIVDVHISHLR 181

Query: 199 KKLSNAAGGKNYIETVWGRGYVLRENAK 226
            K+        Y+ TV G GY  +E  +
Sbjct: 182 DKIEPDPKRPVYLVTVRGFGYRFQEPKR 209


>gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD   A+ +   L          D GE G+++    ++D +I+D  L    G  
Sbjct: 3   QILVIEDDHEAANYLAKGLSELGHRADKADDGETGLQMALDRDYDILIVDRMLPKRDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V+  LR +   TPV ILS +  ++D+V GL++G DDY+ KP+   EL AR+ A+ RR  S
Sbjct: 63  VIEELRKSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPKS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    GDL+++  A +       I L  +E++++E L       +T+ M L +++
Sbjct: 123 ASQVETTYTVGDLTLDRMAHSCRRGDMEIPLQPREFRLLEYLMQHAGQVVTRTMLLENVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +   +P+  +IDV I +LR K+         + T+ G GY +R+ A
Sbjct: 183 EYHFDPQTNVIDVHISRLRGKIDKGFDVP-LLHTIRGAGYTIRDTA 227


>gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
 gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           mollaretii ATCC 43969]
          Length = 238

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE + V+ +D  + G+      + D IILDLGL D  G   
Sbjct: 17  ILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           ++ LR    + P+ +LS  +S EDKV  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 77  IQDLRQWS-AIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 135

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   D+SV+L  + V   G  +HLT  E++++  L       +T+   L  ++ 
Sbjct: 136 SAESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLTQVWG 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 196 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGYRF 236


>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 10  MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 69  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 232


>gi|325276878|ref|ZP_08142571.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324097983|gb|EGB96136.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 222

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA  +   L+ + + V     G D +   +   +D IILDLGL  +PG 
Sbjct: 1   MRLLLVEDNVPLADELIAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL   R A ++TPV IL+   S  +++ GL++GADDY+SKPF+ EEL  RI+A++RR+R
Sbjct: 61  EVLAQWRAAALATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   + V   G  I LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQPRLEAAGLHLDEGRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DG  E +  +++V +  LR+KL     G++ IET  G+GY+   +A+
Sbjct: 181 DGETERDSNVLEVHVNHLRRKL-----GRSVIETRRGQGYIYAGSAE 222


>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V G  I LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A     I TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KCITTVVRTGYKFEGNV 229


>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
           family [Leptospirillum rubarum]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 116/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++     E+F V  T  G +G+ L +    D I+LDL L  + G  
Sbjct: 4   KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R+L+   ++   PV IL+  S   D++ GL+ GADDYI KPFN +EL+ARI+AI+RR+
Sbjct: 64  VNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                          + +++           + LT KE+ ++  L       L ++M L+
Sbjct: 124 EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E   + +DV I +LRKKL +    ++ ++TV   GY  
Sbjct: 184 LVWGADYEGTDRTVDVHIRRLRKKLGDY---QDRVQTVKQIGYKF 225


>gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V I +LR+KL    G K  I+TV G GY+  E
Sbjct: 181 GDEERDPNVIEVLIGRLRRKLEGEQGFKP-IDTVRGLGYLFTE 222


>gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
 gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 119/227 (52%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD   A  +   L     +    + GE G+E      +D +I+D  L    G  
Sbjct: 3   KLLIIEDDAEAAAYLAKGLDELGHSADRAEDGEAGLEQAMAGSYDVLIVDRMLPKRDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ +LR A   TPV ILS +  ++D+V+GL++G DDY+ KP+   EL AR+ A+ RR + 
Sbjct: 63  VIESLRSAGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPKA 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++    GDL ++  A +       I L  +E++++E L       +T+ M L +++
Sbjct: 123 SGDLETTYQVGDLVLDRLAHSCRRGDVEIPLQPREFRLLEYLMQHAGQVVTRTMLLENVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   +P+  +IDV I +LR K+         ++T+ G GY +RE  +
Sbjct: 183 EYHFDPQTNVIDVHISRLRAKIDKDFDKP-LLQTIRGAGYSIREQTR 228


>gi|294813210|ref|ZP_06771853.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
 gi|326441678|ref|ZP_08216412.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294325809|gb|EFG07452.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus
           ATCC 27064]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERHGFVVTAMPDGLLGLEAFRADRPDIALLDVMVPGLDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGR 123

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +    +L+  GDL ++ +   V   G  + LT  E +++   S    T L
Sbjct: 124 AGAGDTAGSGQEAPGALLSFGDLEIDTEGMEVRKGGVPVALTPTEMRLLLEFSTAPGTVL 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 184 SRDRLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLK 231


>gi|254448321|ref|ZP_05061783.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
 gi|198262188|gb|EDY86471.1| response regulator receiver domain protein [gamma proteobacterium
           HTCC5015]
          Length = 226

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 121/219 (55%), Gaps = 2/219 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+      ++  L    F V +   G DG  L     FD ++LD+ L D+ G+ +++
Sbjct: 1   MVEDEIKTGDYLQQGLTESGFLVTLVRNGLDGHHLAMTETFDLLVLDVMLPDVDGWRIVQ 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
           +LR A   TPV  L+   S++D+V+GL+ GADDY+ KPF   EL+AR+R ++RRS     
Sbjct: 61  SLREAGRQTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRRSTVPVM 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              I   DL+++L        G +I+L+ KE+ ++ELL  RK   LT+ +  + ++D   
Sbjct: 121 TDQIRVADLTLDLPRHRAMRAGRKINLSHKEFCLLELLVRRKGEVLTRSLIASQVWDMNF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + +  +IDV I +LR K+ +       I TV G GY L 
Sbjct: 181 DSDTNVIDVAIRRLRAKIDDD-YEPKLIHTVRGMGYKLE 218


>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 IDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
 gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
           DNA-binding domain) [Paenibacillus polymyxa SC2]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK +   I   L  E F       G++ +   K    D IILD+ +  + G +
Sbjct: 4   KILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPGMNGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R    + P+  LS      DK+ GL+ GADDY++KPF+ +EL +RIRA  R+   
Sbjct: 64  VCRSIR-NSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                             L +N       +   +++L+ KE+Q++ +L    N  LT+E 
Sbjct: 123 LLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++   +  E+  + V I  +RKKL       ++I+T+WG GY  +E
Sbjct: 183 IYEYVWG-DEYGELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228


>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
 gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
           [Silicibacter sp. TrichCH4B]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+ + L +    D I+LD  + ++ G E+
Sbjct: 8   VLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEI 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R      P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PATVGMRLEFDDIILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGDDPVRTVRGAGYAL 228


>gi|224282831|ref|ZP_03646153.1| response regulator of two-component system [Bifidobacterium bifidum
           NCIMB 41171]
          Length = 224

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E ++  V   G   ++  K    D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR---- 120
            +   +   PV IL+   +  DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RIVADRP-VPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERAKV 119

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSETIRTVHGVGYAFEPPEQ 224


>gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa]
          Length = 284

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+     V     G +    L    EFD +ILDLGL  + G
Sbjct: 61  MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGLPKMHG 120

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF   EL AR+RA+ RR 
Sbjct: 121 LEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTRRG 180

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 181 MGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 240

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  DE     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 241 EWGDEVSNNAIEVYIHRLRKKIE---RGPIRIATVRGLGYCLEK 281


>gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+   F V     G           +  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL AR RA++RR++
Sbjct: 61  DLLKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI  GDL+VN  A+T ++ G R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + E E   I+V I  LR+KL     G   I TV   GYV+ + 
Sbjct: 181 WQQEIESNAIEVHISNLRRKL-----GAKLIRTVRNIGYVVEKE 219


>gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24]
 gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family
           [Arthrobacter sp. FB24]
          Length = 224

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  LA ++++ L++  +      LG DG++L   +  D ++LDLGL D+ G EV
Sbjct: 4   VLIIEDEAQLARAMQINLRAHGYQAITAGLGADGLKLAAQHPVDIVVLDLGLPDMDGVEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    S PV +LS   + EDKV  L +GADDY++KPF  +EL+AR+RA  RRS   
Sbjct: 64  IRGIRGWS-SVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRRSPAQ 122

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   + T D  V+L A+ V   GH I LT  E+ ++ELL   +   ++++  L  ++  
Sbjct: 123 REAPTVETADFVVDLAARKVVRDGHEIRLTPTEWNILELLVRNQGKLVSQQQLLTQVWGQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + + V++ +LR+KL        ++ T  G GY    
Sbjct: 183 AYAKETQYLRVYLAQLRRKLEQDPARPRHLHTEAGMGYRFDP 224


>gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
 gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM
           13528]
          Length = 226

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   + +MLK++N +      G + +E+ K  + D I+LD+ +  + G   
Sbjct: 6   VLIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVMMPRMDGMMA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R   ++ P+ ILS      DK+ GL  GADDYI+KPFN   L+A+IR+ +RR +  
Sbjct: 66  CMKIRE-SLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124

Query: 123 AQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +       I   D+ +N+D  TV++    I+LT  E++++  L+  K+  L+ +    
Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++++       + + V I +LR+KL        YI+TVWG GY + 
Sbjct: 185 NVWEEPYMEFDRTVTVHIRRLRQKLKKD-----YIKTVWGVGYKIE 225


>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 233

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIMMPIMDGWTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 73  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPDF--RIETVRGLGYRLE 230


>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
          Length = 273

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 248

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L  + + V     GE  +E     +   ++LD+ +  + G  
Sbjct: 16  RILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGLA 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +   TPV I+S  S ++D+V GL  GADDY++KPFN+EEL+ARIRA++RR   
Sbjct: 76  VLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAA 135

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GD+ V LD +T   +G    L+  E  +++LL+    T +++E   + ++
Sbjct: 136 TETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                PE + +D  + +LRKK+ +      +I+ V G GY L
Sbjct: 196 GYTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQL 237


>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +   ++    + V+  ++TV V    I+LT  E++++          LT+E  ++
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family
           protein [Nitrosomonas eutropha C91]
 gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family
           [Nitrosomonas eutropha C91]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/221 (39%), Positives = 141/221 (63%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  L + I   L++  + V   + GE+G+ L   Y  +A I+D+GL+   G 
Sbjct: 1   MRILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++ALR      P+ IL+  SS +DKVRGL++GADDY++KPF  EEL AR++A++RR+ 
Sbjct: 61  DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q+L+  G ++V++ A+ V + G  I LT  EY+++E L   +   L+K++  + LY 
Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +++V I +LR+KL + AG    IET+ GRGY  
Sbjct: 181 HDEDRDSNVLEVMIGRLRRKL-DPAGTLKPIETMRGRGYRF 220


>gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 246

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/236 (30%), Positives = 125/236 (52%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+  +++  L  E +       G D ++    Y+ + I+LD+ +  + G  
Sbjct: 12  RILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKVGSYDPELIVLDVLMPRMDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI------ 115
             R LR   ++ P+ +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RA+      
Sbjct: 72  AARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSSY 131

Query: 116 --VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++ +      ++  GDL ++L  + V   G R+ LT  E+ ++E+        LT+E 
Sbjct: 132 TGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTREQ 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L  ++    EP    +DV++  LR+K + AAG    + TV G GYVLR    D +
Sbjct: 192 ILKAVWGFDFEPSSNSLDVYVMYLRRK-TEAAGEPRLVHTVRGVGYVLRPAEGDPS 246


>gi|300727604|ref|ZP_07060993.1| transcriptional activator protein CopR [Prevotella bryantii B14]
 gi|299775124|gb|EFI71727.1| transcriptional activator protein CopR [Prevotella bryantii B14]
          Length = 233

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           I ++ED+  ++  +   LK   + + V   G++     K    +D ++LD+ +  + G E
Sbjct: 13  ICMVEDELNISDFVSRGLKDFGYEIDVFHNGQEAWNKLKADNRYDLLLLDIRMPGMTGLE 72

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +  R      TP+ +L+ + + ED V GL +GADDY+ KPF   EL+ARI+A++RR++
Sbjct: 73  ICQHYREKYGYHTPILMLTALGTTEDIVMGLHAGADDYVVKPFKFAELIARIKAMLRRTQ 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ ++  DL+++              L+ KEY+++E +       +++   L  ++D
Sbjct: 133 ALQQNSLIYHDLTIDPSTHKAIRSNIEADLSVKEYRLLEYMMQHHGEVISRRQLLKDVWD 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    I+DV++  LR K+ +       I T+ G GY+L+
Sbjct: 193 KDFDTNTNIVDVYVKYLRTKI-DDPFKTKLIHTIIGMGYMLK 233


>gi|262375479|ref|ZP_06068712.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262309733|gb|EEY90863.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 221

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 135/223 (60%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + +   + G+  I   + +++D I+LD GL +  G 
Sbjct: 1   MRILLAEDDQSQADSIQTWLEMDGYVIDRVERGDHAILAIEQHQYDCILLDRGLPNATGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L++LR  +  TPV  ++   SI+D+V GL  GA+DY+ KPF+ EEL AR+RA +R+ +
Sbjct: 61  EILKSLRSQQQDTPVIFITAKDSIDDRVEGLDLGANDYLVKPFSLEELSARVRAQLRQKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +++  DLS++  AKT+  +G  ++LT KE+Q++  L  +    +T+E     LY 
Sbjct: 121 QTPNHILLWQDLSLDTQAKTLTKEGQAVNLTAKEFQILYKLMQQPEHIVTREQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE E   I+VFI +LRKK+     G   I+T+ G GY + +
Sbjct: 181 WGDEIESNAIEVFIYQLRKKI-----GSQMIKTIRGLGYRMHK 218


>gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
 gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp.
           RUH2624]
          Length = 220

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 132/221 (59%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R   
Sbjct: 61  KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQLRNQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS+++ GDL ++  AK V + G+ I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGDEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 219

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 126/222 (56%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+ L     +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +  ALR A   TP+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G L ++  A+ V      + LT KE+ ++E L  R    ++K   L H++D
Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V+I  LR+KL  AA     I TV G GY L 
Sbjct: 181 FAYDGDPNIVEVYISTLRRKLGAAA-----IRTVRGAGYRLE 217


>gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 224

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK L H +  +L      V+ TD  +  +     Y  D  I+DLGL D+ G 
Sbjct: 1   MKILLVEDDKLLNHHLATLLTEAQNQVHSTDNAQVALHYATDYPIDVAIIDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I  P+ +L+   + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS 
Sbjct: 61  QLIRQLRERQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GD  ++L  K + + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 121 GFISPRVKAGDYELDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   I+V + +LRKKL +  G    I T+  +GY+ 
Sbjct: 181 -DGEGDPNTIEVMVSRLRKKL-DPEGNIQPISTIRRQGYIF 219


>gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED+  +A SI+  L   +F V V   G  G  L    ++  I+LDL L  I GFEV
Sbjct: 6   ILLVEDEPKVASSIQQWLLEHDFLVDVAPDGAVGRHLALTNDYALILLDLNLPFIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            +A+R  K   P+ +++ + S+++K+ G   GA+DY+ KPF+  EL+AR+R +++ +   
Sbjct: 66  CKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKNAVSF 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                SL+   DL +NLD K V   GH I LT KE+ ++  L   +   ++K   +  ++
Sbjct: 126 NTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIMEQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +    +++V+I  LRKK+         I T  G GY L  N
Sbjct: 186 DLNFDSGTNVVEVYINFLRKKIDRN-YEPKLIHTKPGMGYYLAAN 229


>gi|240172611|ref|ZP_04751270.1| DNA-binding response regulator MtrA [Mycobacterium kansasii ATCC
           12478]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
 gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
          Length = 233

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 73  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++ +        IETV G GY L 
Sbjct: 193 YAGDDRTVDVHIKRLRERFATTPDF--RIETVRGLGYRLE 230


>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
 gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC61]
 gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. Y412MC52]
          Length = 224

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L++  F       GE+ + L   +  DA++LD+ +    GF V
Sbjct: 6   VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+  L+ +    DKV+GL+ G DDYI KPF+  EL+AR+ A++RR +  
Sbjct: 66  CARIREQS-DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +  GDL+++   +TV V G  + LT KE++++  L+  +    +++  L  ++ 
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGKPVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  LR KL +AA    +I+TVWG GY   
Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223


>gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855]
          Length = 226

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFEV 62
           L++EDD  +   +E   + E++ V   + GE  ++  K   + D ++LD+ L +  GFEV
Sbjct: 2   LIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLDVMLPEKDGFEV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   +    S PV +++     E K++G   GADDYI+KPFN EEL AR++AI++R+   
Sbjct: 62  LEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPP 121

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           A++ +     GD+ VN         G  ++ T  E+ ++  L   K  T+T++  L  ++
Sbjct: 122 AEAPMDVYEIGDVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    + ID  +  +RKK+        YIETV+G GY   E 
Sbjct: 182 GIDENIITRTIDRHMASVRKKIEPDPSDPTYIETVYGIGYRFDEE 226


>gi|254995251|ref|ZP_05277441.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Mississippi]
 gi|255003432|ref|ZP_05278396.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004551|ref|ZP_05279352.1| transcriptional activator protein (czcR) [Anaplasma marginale str.
           Virginia]
          Length = 292

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 131/232 (56%), Positives = 162/232 (69%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDI- 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+      
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKECASDD 234


>gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile
           QCD-23m63]
 gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08]
 gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07]
 gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08]
 gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  SIE+ LKSE F +Y    G   +E+    +   I++D+ +  + G + 
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  + + P+ ++S  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 64  TVKIREER-NIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++ +G L +N   K V++ G  I +T  EY++IELL   K    + +    
Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I ++R+K+        +++ VWG GY + +
Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229


>gi|229014970|ref|ZP_04172051.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|228746320|gb|EEL96242.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 207

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 66/207 (31%), Positives = 113/207 (54%), Gaps = 7/207 (3%)

Query: 21  KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSG 80
           ++E       +   + ++  +  EFD IILD+ + ++ G +    +R  + + P+ +LS 
Sbjct: 2   ENEGLQTQKVEDAIEALKQLEEKEFDLIILDIMMPNMDGIKACMKIREER-TIPIIMLSA 60

Query: 81  MSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR------GHAQSLIVTGDLSV 134
            S   DK++GL SGADDY+SKPFN  EL+AR+++ +RR           +++I  G+L++
Sbjct: 61  KSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRYTKYNTETNKNKNIIEIGNLTL 120

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194
           N DA+ V V+G    LT KE+ ++ELL+  K   L+ E     ++          + V I
Sbjct: 121 NTDARQVWVRGKETRLTPKEFDILELLARNKGMVLSIEKIYEAVWKENFYKSDNNVMVHI 180

Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++R K+   +    YI+TVWG GY +
Sbjct: 181 TRIRDKIEEDSKHPIYIKTVWGVGYKI 207


>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
           subsp. salmonicida]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 77/230 (33%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +  +L  E F V V + GE+G+      +F+ ++LD+ +  + GF 
Sbjct: 3   KILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L  LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+ARIRAI+RR+  
Sbjct: 63  MLAKLRETH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQS 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               RG     I   DL +    +        + LT  E+ ++E L       ++K    
Sbjct: 122 AQPQRGGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECLLRNPGQIVSKSQLS 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +   + EP  + ID+ +  LRKKL     G+   +TV GRGY+  E A
Sbjct: 182 ELVLGKKLEPFDRAIDMHLSNLRKKLPERTDGQPRFKTVRGRGYLWLEQA 231


>gi|90411444|ref|ZP_01219455.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
 gi|90327657|gb|EAS44000.1| probable two-component system response regulator (Pho family)
           [Photobacterium profundum 3TCK]
          Length = 225

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  ++   +   + V     G+ G +L     +D I+LDL L    G 
Sbjct: 1   MHILVIEDDPHISGFLKQGFEELQYQVTCCGDGKQGYQLATMELYDLIVLDLMLPTWDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR +R      P+ ILS   S+E++V GLQSGADDY+ KPF   EL AR + + RR  
Sbjct: 61  EVLRRIRGEGHQIPILILSARHSVEERVLGLQSGADDYLVKPFAFAELAARCQILSRRQV 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  + +   DL+++L  + +   GH I L  +E+ +++L   +     +K + L +++
Sbjct: 121 VSHNANQLSYHDLTLDLLTRKLCRDGHDILLKQREFALMQLFIQQPERVFSKTVILENIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +P+  ++DV +C+LR ++         I T+ G GYVL+
Sbjct: 181 GFQFDPQTNVVDVLVCRLRAQVDKGFEMP-LIHTIRGVGYVLK 222


>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 242

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +   +   L  + + V     G+   +       D +ILDL L    G  
Sbjct: 3   HVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLMLPGEDGLS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S P+ +L+ M S  D+V GL+ GADDY++KPF+  EL+ARIRA++RR+  
Sbjct: 63  LCRHLRAT-TSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLRRAGQ 121

Query: 122 HAQS-------------LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNT 167
             QS             ++      +++  + +    G    +T  E+ ++       + 
Sbjct: 122 MMQSAPREPTPADEPVEILEFSGWHLDVSRRRLTSPDGVLAEITSGEFDLLLAFLRHPHQ 181

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+++  L+        P  + IDV + +LR+K+          +TV G GYVL  + K
Sbjct: 182 VLSRDQLLDLARGRVSGPFDRTIDVQVGRLRRKMETDPKTPELFKTVRGGGYVLTVDVK 240


>gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
 gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD A+++ I   L+++ +  +    G   +     Y  D +ILDLGL D+ G +
Sbjct: 5   KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +++ +R    + P+ ++S  +  +DKV  L +GADDY++KPF+ +E +AR+R  +RRS  
Sbjct: 65  IIKKIRSFS-TMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSHT 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G   S+ V G+L ++  A  V V    +HLT  EY+++ LL+      LT    L
Sbjct: 124 EGAKPGEESSVYVNGNLKIDYAAGCVYVDSAEVHLTPIEYKLLCLLAQNTGKVLTHNYIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      ++  + VF+  LRKK+  +     YI+T  G GY +
Sbjct: 184 KEVWGSTLASDIPSLRVFMATLRKKIEKSTSSPQYIQTHIGVGYRM 229


>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
 gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
          Length = 311

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 15/231 (6%)

Query: 1   MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           M+     IL+ +D+K +   + L+L  E + V   + G++ + +    E D  +LD+ + 
Sbjct: 80  MKNGKICILIADDEKEIRDILRLLLTGEGYAVCTAENGKEAL-VLASAEVDLYLLDVNMP 138

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ GF     +R    + P+  L+  S   DKV G  +GADDYI KPF+  EL+ R++AI
Sbjct: 139 ELSGFMAGSEIRKQ-FNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAI 197

Query: 116 VRRS-------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +RRS       +   +S I  GDL ++L+ ++V  QG  I LT  E++++ELL   K   
Sbjct: 198 LRRSARGTAPAQEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKI 257

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            + E     +++     +   I V I  +RKKL + +    YI+T WGRGY
Sbjct: 258 YSLENIYQSIWEEDAVGDS-AIMVHIKNIRKKLEDDSRNPRYIKTAWGRGY 307


>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
 gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
          Length = 223

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 227

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 109/223 (48%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L +EDD+A+A  +   LK E + V   D  +  ++      FD ++LD+GL D  G+
Sbjct: 1   MNVLFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGLPDGSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++    +  +   PV  L+ +    + V GL  G DDYI+KPF   EL++RIR++ RR  
Sbjct: 61  DICTYAKSRQ-DVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRIRSVQRRYH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +I    LS+      V  +   I LT  EY+++ +L       L++   L  ++D
Sbjct: 120 RQEEDIIQIQYLSIYPKQGKVYKEQEEILLTALEYRLLMVLVNHPQQVLSRSQLLEGIWD 179

Query: 181 -GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              D      + V++ +LR+KL         I TV G GY L 
Sbjct: 180 VAGDFVNDNTLSVYMKRLREKLERDPKNPTIIVTVRGLGYRLE 222


>gi|255523798|ref|ZP_05390763.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512501|gb|EET88776.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 242

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 10/231 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILLI+D++ +   IE +L  E F N+     G DGI++C+  + D ++LD+ L DI G 
Sbjct: 10  KILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGIKICEDEKPDIVVLDIMLPDIDGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R      P+  LS  +S  DK+ GL  G DDY++KPF+ +E+  RI+A  RR +
Sbjct: 70  EVCKKIRQFSY-CPILFLSAKNSDVDKIVGLSMGGDDYVTKPFSPKEIAFRIKAQFRRQQ 128

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +    I   +++++     V  +   + LT KEY+++  L+   N  + KE
Sbjct: 129 YDGIKEVSDNKNENIKISNINIDKLHSQVYKEDIEVKLTAKEYKLLLYLAENSNKIVNKE 188

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++          I V I  LR+KL         I TV G GY L +
Sbjct: 189 RLCEVVWGDDYIGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKLVK 239


>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
 gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
          Length = 232

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 59/229 (25%), Positives = 106/229 (46%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED++ +A  +   L    +   +   G + +   K   FD I+LDL L    G  
Sbjct: 3   HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +     +  + +++      D++ GL+ GADDYI KPF+  E+VAR++ I+RR   
Sbjct: 63  ICREI-QEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRINP 121

Query: 122 HAQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              + I T          + +N D     +  H + LT  E+ ++ +L+       ++  
Sbjct: 122 PLTTGINTNIAKQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRIYSRSQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++ +Y        + ID  I KLRKKL+        +++V+  GY L 
Sbjct: 182 LIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230


>gi|71066576|ref|YP_265303.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039561|gb|AAZ19869.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 109/228 (47%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA   +  L      V +   G   I      + D ++LD+ L    G  
Sbjct: 11  RILIVEDDERLAMLTQDYLVKNGLEVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 71  VCREVRP-HYQNPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  G+L ++   ++V +    +  T  EY ++ LL+      L++E     
Sbjct: 130 VPSEDVPQRLEFGELVIDNGGRSVNLGDELVDFTSAEYDLLWLLASNAGRILSREDIFER 189

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L     + + + IDV I ++R K+ +       I+TV  +GY+  +  
Sbjct: 190 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237


>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
 gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+  +A  I+  L+   + V+  + G + +EL    + D ++LD+ L +  G
Sbjct: 1   MKSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +E+L+ +R  K S PV I++ +   + K++GL  GADDYI+KPF  +E+VAR+ A++RRS
Sbjct: 61  WEILQYIRE-KSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRS 119

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q   + G L +N  +  V + G  +    ++  ++  L+   N T T+E  +  
Sbjct: 120 VILVKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQ 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++        + +D+ I ++RK L N    +  I+T  G GY  
Sbjct: 180 VWGMDYGGSDRAVDLAIKRVRKTLENWPVQEGEIKTQRGVGYQF 223


>gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 220

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  +   + + L++E   V     G D +      + D +I+D+ + ++ G+ +  
Sbjct: 1   MVDDDAHIRELVRVFLQNEGLEVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWALCE 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+       KV+G   G DDY+ KPF   EL+ R+++I++R R    
Sbjct: 61  EIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIALS 120

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
            ++  G++ +N     V++ G  I L  KE++++  L+     T ++E  +  ++    E
Sbjct: 121 QVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWGYDYE 180

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + + IDV I ++R++      G   I T+ G GY L 
Sbjct: 181 GDERTIDVHIKRIRERFPQEISGF-VIRTLRGLGYRLE 217


>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
           [Streptomyces flavogriseus ATCC 33331]
          Length = 237

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/238 (29%), Positives = 119/238 (50%), Gaps = 23/238 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+   F V     G +G+E  +    D  +LD+ +  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMVPGLDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 123

Query: 119 --------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                          +  A  ++V GD+ ++ +   V  QG  + LT  E +++   S  
Sbjct: 124 ATGTGPGAPAATGGPQDGAGGVLVFGDVEIDTEGMEVRRQGAHVGLTPTEMRLLLEFSTA 183

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T L+++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 184 PGTVLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLR 236


>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
 gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
           [Phaeobacter gallaeciensis 2.10]
 gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
           protein [Phaeobacter gallaeciensis BS107]
          Length = 229

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    +   L+++ F V   + GE+ + + +    D I+LD  + ++ G EV
Sbjct: 8   VLVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIEV 67

Query: 63  LRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L  R    + P+ +LS  S   DKVRGL++GADDY+ KP++  EL+AR+R  +RR R
Sbjct: 68  CRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVR 127

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+ ++ +   V      + L   E++++     +     ++E  L+ ++
Sbjct: 128 PSTVGVRLEFDDIILDAETHKVSRAEAPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + +DV I +LRK L+   GG + + TV G GY L
Sbjct: 188 GRDIYVDTRTVDVHIGRLRKALTQH-GGSDPVRTVRGAGYAL 228


>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
 gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
          Length = 236

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL  +DD  +   + ++L+ E F V     G++ +E       D IILD+ +    G  
Sbjct: 9   RILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMPGKSGIL 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K++ P+  L+  +   DK  G  +G DDY++KPF+  ELVAR++A++RR   
Sbjct: 68  ACLEIR-KKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                 R      I   DL +N D++ V ++G  I LT  EY+++ LL+  +    T + 
Sbjct: 127 YQGGGNRKEDDVQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186

Query: 174 FLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +++          + V I  LRKKL        YI  VWG+GY + 
Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236


>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 234

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  +A  +E  L+ E F       G   + L +    D ++LD+ L ++ G EV
Sbjct: 14  VLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDGLEV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           LR +R +   TPV +++  +   DK+ GL+ GADDY++KPF+  E+VAR++A++RR    
Sbjct: 74  LRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  G L ++ +     + G R+ LT  E++++E L+       ++   L     
Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAALP 192

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   +++DV +  LR+KL  AAGG   +ETV G GY L
Sbjct: 193 -DSDALERVVDVHLKNLRRKLE-AAGGAGLLETVRGVGYRL 231


>gi|116490563|ref|YP_810107.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|116091288|gb|ABJ56442.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
          Length = 228

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           IL+IED+ A+   ++  LK E++ V     GE G+ + +      + ++LD  L    G 
Sbjct: 6   ILIIEDETAIVAYLQTELKFEDYIVLTASDGEMGLSVFEQNSNRINVVLLDWMLPKRDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +++  S I DKV  L SGADDYI+KPF  EEL+AR+R  +R   
Sbjct: 66  EVLRRIRKLNSQVSIILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQN 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L    +L ++LDA  V   G  I LT +E+Q++  L    + TLT++  L++++ 
Sbjct: 126 KPRPKLYQVSNLVLDLDAHRVTRDGQVIDLTQREFQLLTYLIENADKTLTRDDLLDNVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +    DV+I  LR+K+ +       I TV   GYVLR
Sbjct: 186 VDFNGQYNTADVYIRYLRQKI-DDHFYPKLIHTVRSVGYVLR 226


>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 230

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L L+           GEDG+E       D ++LDL L  + G E
Sbjct: 3   RVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLMLPGMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV ILS      D V GL++GADDYI KP + E + AR+RA++RR   
Sbjct: 63  VCRRIRETS-QVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMRRLAP 121

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                       V GDL ++  A  V   G  + L   E +++  LS     T +++  L
Sbjct: 122 SQPGPAAGAEPTVHGDLEIDRLALRVCRSGTEVTLAPSELKLLLFLSAWPERTFSRQQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +++     + +++D  + ++R K+        +I+TV G GY  
Sbjct: 182 EQVWEHSYYGDARLVDACVMRVRSKIEEDPRHPRHIQTVRGFGYRF 227


>gi|317061728|ref|ZP_07926213.1| DNA-binding response regulator [Fusobacterium sp. D12]
 gi|313687404|gb|EFS24239.1| DNA-binding response regulator [Fusobacterium sp. D12]
          Length = 231

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 114/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  + + I    K E + V     G + ++  K   FD +ILD  L  + G +
Sbjct: 7   KVLIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQ 66

Query: 62  VLRALRVAKI---STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + + +R       S  V +++  +  ED + G   GAD+Y+ KPF+  EL+AR + +++ 
Sbjct: 67  LTKIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQN 126

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H+++      L ++     V  +G  + L+ KEY ++  L + +   +T+E  L+ +
Sbjct: 127 KIPHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +        + +DV+I KLR+KL    G    I+TV G GY L E
Sbjct: 187 WGSTYYIGDRTVDVYISKLREKL---PGISTSIKTVKGVGYKLEE 228


>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
 gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
          Length = 225

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDETRHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
 gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342]
 gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp.
           1_1_55]
          Length = 223

 Score =  251 bits (643), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  L   + L ++SE +         +         +  I+LDLGL D  G 
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  GDL +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y 
Sbjct: 121 NQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++V I  LR+K+     GK+ I TV G GY+L
Sbjct: 181 WDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYML 216


>gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
          Length = 219

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F++     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|86750553|ref|YP_487049.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86573581|gb|ABD08138.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 16  MRLLIIEDDRESADYLVKAFREVGHVADLASDGEEGLALADSGDYDVLVIDRMLPKRDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 76  SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 135

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+      GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 136 GPAEETSYRVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 196 DYHFDPQTNVIDVHISRLRGKIDKGFDRP-LLHTIRGAGYMIRD 238


>gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227]
 gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227]
 gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74]
          Length = 219

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   +    + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|302530375|ref|ZP_07282717.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439270|gb|EFL11086.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 230

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L+   + V +   G   +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLEFNGYTVELASDGAQALETILANRPDAMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV R LR      P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G    ++   DL+++   + V   G  I LT  E+ ++EL        LT+   L
Sbjct: 121 PDAQQGETSEVLSFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 EEVWGYDFPTSGNALEVYVGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 230


>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
 gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
           JGS1721]
          Length = 226

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRIRKVS-EVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRV 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ +  
Sbjct: 121 FTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +       E  +IDV++  LR K+ +    K  I TV G GYV+++ 
Sbjct: 181 VCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKDE 226


>gi|186471275|ref|YP_001862593.1| two component heavy metal response transcriptional regulator
           [Burkholderia phymatum STM815]
 gi|184197584|gb|ACC75547.1| two component heavy metal response transcriptional regulator,
           winged helix family [Burkholderia phymatum STM815]
          Length = 228

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 132/230 (57%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  +   +   L  + + V V   GE+G+ L   +++D I+LD+ L    G 
Sbjct: 1   MKLLIVEDEFKVVDYLRRGLTEQGWVVDVALDGEEGLHLASEFDYDIIVLDVMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR+ K STPV +L+    + D+VRGL+ GADDY++KPF+  ELV R+ A+ RR+R
Sbjct: 61  SVLKALRMRK-STPVIMLTARDHVNDRVRGLREGADDYLTKPFSFLELVERLHALARRTR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI  GDL V+L  +     G R+ LT KE+Q++ +L+ R+   L+K M    ++D
Sbjct: 120 VQESTLICVGDLYVDLIGRRATRGGVRLDLTAKEFQLLSVLARRQGDILSKAMITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              +    +++  I +LR KL +       + T+ G GYVL    + E  
Sbjct: 180 VNFDSHTNVVETAIKRLRAKL-DGPFPTKLLHTMRGMGYVLEVREEAEAT 228


>gi|90580521|ref|ZP_01236327.1| DNA-binding response regulator [Vibrio angustum S14]
 gi|90438430|gb|EAS63615.1| DNA-binding response regulator [Vibrio angustum S14]
          Length = 235

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G E
Sbjct: 6   KILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVTWNPHLVLLDLGLPDADGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
             + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR  +R    
Sbjct: 66  FTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIRVALRLHSH 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S     S    GD+ +++  +TV   G  I LT KEY+++ LL+      LT +  L  +
Sbjct: 125 STATEVSQYRFGDVLLDMAMQTVMFNGESIKLTPKEYKILTLLAKNMGKVLTHKQILKEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G        + + I +LR K+  +     YI T  G GY L
Sbjct: 185 WGGNYTEHAHYVRIHIAQLRHKIEKSPAQPQYIITENGVGYRL 227


>gi|28210587|ref|NP_781531.1| two-component response regulator [Clostridium tetani E88]
 gi|28203025|gb|AAO35468.1| two-component response regulator [Clostridium tetani E88]
          Length = 228

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+IED++ ++  ++  L  E + V  T  G +GIE+ K   F  IILDL L DI 
Sbjct: 1   MKESILIIEDEEKVSSVLKAYLGKEGYKVISTTSGIEGIEIFKKGNFKLIILDLMLPDIE 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EV + +R       + +L+    + +++ GL  G D+Y+ KPF+  EL AR+ A+ RR
Sbjct: 61  GEEVCKIIRGIS-DVYIFMLTAKGDLSNRIEGLNIGGDEYLVKPFSPRELTARVNALFRR 119

Query: 119 SRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             G  + ++    G+L +N   + VE++   + LT  E+Q++  L+  K    T+EM +N
Sbjct: 120 IGGEDEEILSFNNGELKINKIKRIVEIEKRDVKLTPNEFQILYALASNKGKVFTREMLIN 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  +   + +DV +  +RKK+   +    Y+ TV   GY  
Sbjct: 180 SALGLDFQGFDRTVDVHVKNIRKKIEKDSRNPKYVLTVTRVGYKF 224


>gi|89072466|ref|ZP_01159045.1| DNA-binding response regulator [Photobacterium sp. SKA34]
 gi|89051998|gb|EAR57450.1| DNA-binding response regulator [Photobacterium sp. SKA34]
          Length = 235

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G E
Sbjct: 6   KILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVSWNPHLVLLDLGLPDADGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
             + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR  +R    
Sbjct: 66  FTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIRVALRLHSH 124

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     S    GD+ +++  +TV   G  I LT KEY+++ LL+      LT +  L  +
Sbjct: 125 NTATEVSQYRFGDVLLDMAMQTVMYNGESIKLTPKEYKILTLLAKNMGKVLTHKQILKEV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + G        + + I +LR K+  +     YI T  G GY L
Sbjct: 185 WGGNYTEHAHYVRIHIAQLRHKIEKSPAQPQYIITENGVGYRL 227


>gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
 gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
 gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Oenococcus oeni PSU-1]
 gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
 gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429]
          Length = 230

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++DDK +A  +E+ +++E     +   GE+ +       +   +ILD+ +  + GF
Sbjct: 3   KILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTNPDIALMILDVMMPGMNGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V++A+R    + P+ I+S  +   DK++GL +GADDY++KPFN  E++AR+R+++RRS 
Sbjct: 63  DVVKAVRKD-TNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSS 121

Query: 121 GHA----QSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    +I  G L++N D+  V    G  + LT  E+ ++ LL+   N   + +   
Sbjct: 122 NEVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        K + V +  LR K+  A  G   I+TVWG GY + 
Sbjct: 182 ERVWQTESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGYKVE 228


>gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 227

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L +    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSNHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   I+TP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGIATPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  ++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAGKTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|224371346|ref|YP_002605510.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223694063|gb|ACN17346.1| two-component response regulator (OmpR-like protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 226

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 58/222 (26%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  +A  ++  L  E + V + D G++ +   K      I+LD+ L  + G  
Sbjct: 5   QVLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDGKT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V R +R      P+ +++      D++ G + G DDYI KPF+  E+VAR+ A++RR+ +
Sbjct: 65  VCREVRKFS-DVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTFK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  ++  G + +N  ++  E+ G+ + LT  E+ +  +L    N   T+   +  +  
Sbjct: 124 KSSDDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEKVQG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   + ID  I  LRKK+     G+  I++ +G GY + 
Sbjct: 184 YNYDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKIV 225


>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 227

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L +S+   L  E + V     G     L + + +D +ILD  L    G 
Sbjct: 1   MRILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   LR  +  TP+  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  EICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRPP 120

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +  GDL  + + +        I L+ KE Q++E L       LT      
Sbjct: 121 ILDVAVTSNRLEFGDLQFDCETQLAYRGQRAIELSEKESQLLEYLMRHPGQLLTHTEIHQ 180

Query: 177 HLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           HL+   D +P   ++   I  LR+K+         + TV+G+GY  
Sbjct: 181 HLWGETDKKPSSNVLAAQIRLLRRKIE-LPNEVPLVHTVYGKGYRF 225


>gi|168186231|ref|ZP_02620866.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
 gi|169295719|gb|EDS77852.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
          Length = 226

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK L   ++  L+ E + +  T   E+G ++    + D ++LD+ L D  G +
Sbjct: 3   KILIVEDDKLLNKGVKFALEIEGYTIVDTYNYEEGYKVFSKNKVDLVLLDINLPDKSGSK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  ++   +  D + G + G DDYISKPF+ E L  RI+A++RR+  
Sbjct: 63  LCIEIR-KNSEIPIIFITAKDTESDIIDGFKLGCDDYISKPFSIEVLKQRIKAVLRRTTV 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L V  D++++ +   V+  G  I LT KEY+++ELL       LT+   L  L+D 
Sbjct: 122 VENRLFVYEDITIDFNKMDVKKNGITIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  +   ++V I +LRKK+ + +    YI TV+  GY   + +
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGYTWGKTS 226


>gi|299069602|emb|CBJ40874.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
           CMR15]
          Length = 245

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+    H + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFSFGPFRLNFRMRTLFRGEHALSISDTEFALLKLLVTHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +Y        + IDV + +LR+ L   A    YI+TV GRGY    + +D
Sbjct: 185 ELMYGPGSAVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERD 236


>gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
 gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family
           [Pseudovibrio sp. JE062]
          Length = 223

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           ++IEDD+  A  +   LK    +    D GEDG+EL     +D +++D  L    G  ++
Sbjct: 1   MIIEDDREAADYLLKALKEAGHSPDHADNGEDGLELAISNTWDVLVVDRMLPKRDGLSII 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-H 122
             LR +   TPV ILS +S ++D+V GL++G DDY+ KP+   EL+AR+  + RR  G  
Sbjct: 61  ETLRASGDETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQ 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++ +   DL ++  A +V   G  I L  +E++++E L       +T+ M L +++D  
Sbjct: 121 VETKLQVSDLVLDRLAHSVTRAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYH 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +P+  +IDV I +LR K+         + TV G GY +R+++
Sbjct: 181 FDPQTNVIDVHISRLRSKIDKGFDFP-LLHTVRGAGYSIRDSS 222


>gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
 gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum
           EbN1]
          Length = 228

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 4/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD+ +A+ +   LK   + V     G +         +D +ILDLGL  +PG 
Sbjct: 1   MRILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR  K + PV IL+    +E++VRGL +GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G LS +   +  ++ G  + L+ +E  ++E+ +LR    ++K+  ++HL  
Sbjct: 121 GQPR-CIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +E     I+V++ +LRKKL ++      I TV G GY L      +T 
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCLENPDAVQTA 226


>gi|325830179|ref|ZP_08163636.1| putative response regulator MprA [Eggerthella sp. HGA1]
 gi|325487646|gb|EGC90084.1| putative response regulator MprA [Eggerthella sp. HGA1]
          Length = 245

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 122/234 (52%), Gaps = 2/234 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA ++  +L    +   V   G  G+   +  ++D IILD+ L  + GF
Sbjct: 9   MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   IS PV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 69  AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K+M +  ++ 
Sbjct: 129 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN-AKDETCEYL 233
                E   ++ ++  LRKK+         IET+   GY    + A D+  E  
Sbjct: 189 VESSAEDNNVEAYVSFLRKKMKFLGSTAR-IETLRRAGYRFVADAAPDDASESA 241


>gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 244

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 5/234 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED+  +   ++  L+ E + V     GE  ++  +    +  +LD+ L DI G E+
Sbjct: 6   IYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDIDGLEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + LR    +   P+ +L+      DKV GL+ GADDYI+KPF+  E++AR++A++RR  
Sbjct: 66  CKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAVLRRVT 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  I  GD+ +N   + V     ++ LT KE+++++LL L K   L+++M L  
Sbjct: 126 EIGAEEEEEIRQGDIVMNCSRREVYKGSRQLDLTLKEFELLKLLLLNKGRVLSRDMLLEK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           ++    + E + +DV I  LR+K+        YIETV G GY   +       E
Sbjct: 186 IWGYEYQGETRTVDVHIRYLRQKIEEDDNNPLYIETVRGIGYRFSDKVSRTDSE 239


>gi|238028534|ref|YP_002912765.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
 gi|237877728|gb|ACR30061.1| Two component transcriptional regulator, winged helix family
           protein [Burkholderia glumae BGR1]
          Length = 252

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  +PG 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVCSGVDADTALSMQTFDLLILDLGLPKMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSGA---RIATVRGLGYCLEKAAP 223


>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 232

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL +DD  L+  I+     E + V     G + +EL      D +ILD+ + ++ GFE
Sbjct: 3   KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K S PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR+  
Sbjct: 63  TLKQIR-NKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQ 121

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I    + +    +TV ++G  + LT  EY ++E + +     LTK+     
Sbjct: 122 EREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +     + +D+ I  LRKK+ N   G   I+TV G GY+   N +
Sbjct: 182 ALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSNEQ 230


>gi|116073496|ref|ZP_01470758.1| two-component response regulator [Synechococcus sp. RS9916]
 gi|116068801|gb|EAU74553.1| two-component response regulator [Synechococcus sp. RS9916]
          Length = 244

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+L+++D+  L   + L L  E ++V V   G  G+   +     D I+LD  L D  G 
Sbjct: 10  RVLVVDDETKLTELLRLELDVEGYDVDVASDGATGLVKARSQPSPDLIVLDWNLPDFSGV 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R   ++TP+ +L+G   + D+V  L +G DDY+ KPF+ EEL+AR+RA+ RR++
Sbjct: 70  DICQRIRRGGVTTPILMLTGHDDVADRVTALDAGVDDYLIKPFSIEELMARLRAMQRRAQ 129

Query: 121 GHAQS-------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             + S        +  GDL V+   + V      I L+ KEY ++  L       L +  
Sbjct: 130 SFSGSGQESLPVRLSVGDLRVDTSTRDVVRGERTIQLSVKEYDLLLFLMRAGGKVLERAD 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            +  ++      +  ++DV+I  LR+K+  +      I TV G G++LR+  +  T
Sbjct: 190 IMRGVWGENFYGDDNLLDVYIRYLRQKIE-SPDRPTLIHTVRGVGFILRDETQQAT 244


>gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
 gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB
           [Myxococcus xanthus DK 1622]
          Length = 229

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D++ LA  I+  L+      +V+  GE+ +   +    D ++LDL L D+ G +V
Sbjct: 4   VLIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSGIDV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR +  S    + +L+      D++RG + GADDY+ KPF+  ELV R++AI+RR  
Sbjct: 64  CRQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILRRGA 123

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +  G L +++ +    V+   + LT  E++++E L  R     T+E  L  +
Sbjct: 124 PTAGGTAPLALGPLRLDVASHRFFVEDREVALTALEFRLLEHLLARLGRVQTREQLLEEV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      E + ID  + +LR KL  A   +  +ETV G GY + + A
Sbjct: 184 WGLSSSLETRTIDTHVMRLRDKLGPA---RALLETVRGVGYRMLDPA 227


>gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241]
 gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241]
          Length = 221

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 220


>gi|300783660|ref|YP_003763951.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299793174|gb|ADJ43549.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 237

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  +  + + E +       G+  +     +  D ++LDL L D+ GF 
Sbjct: 8   RLLVVDDEPHIADLVATVARYEGWQAVTAGTGQTALSRAAEFGPDIVVLDLMLPDLDGFT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + PV  L+   +  D++ GL  G DDY+ KPF+ EEL+AR+RA++RRS G
Sbjct: 68  VLDRLRAGGNAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRSAG 127

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A         +  GDL+++ D + V        LT  EY+++  L  R    LTK   L
Sbjct: 128 LAHQPEARGAVLRVGDLTLDEDTREVRRGERLAELTPTEYELLRYLMRRSPAVLTKAQIL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +H+++        ++++ I  LR+K+    G    I TV G GYV+R+
Sbjct: 188 DHVWEYDFGGRSNVVELVISHLRRKVDTGDGEP-LIHTVRGVGYVVRQ 234


>gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
 gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573]
 gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus
           MB-451]
          Length = 219

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  L + I   L    +   ++  G D +      E+D I+LDLGL  + G 
Sbjct: 1   MKILVVEDDVQLGNQILSALDQTGWVPELSQDGIDALYRATAEEWDVIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R   I+TPV ILS   ++  +V GL +GADDY++KPF   EL+ARIRA +RR+ 
Sbjct: 61  TVLKGIRDENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+A  ++  GDLS++     V  +G  I LT  EY++I          +++   + H+Y 
Sbjct: 121 GNASPVMQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++RKK+       + I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRKKI-----APDVIKTVRGLGYQL 216


>gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp.
           5_1_39BFAA]
          Length = 224

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  L   +      + ++V  T   +DG++      +D + LD  L D  GFE
Sbjct: 5   KILIVEDDVDLREGLSFSFSGDGYDVTETGTKKDGLQEIANGGYDIVFLDCNLPDGTGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R +  + P+ +L+   +  D+++ L+ G +DY+SKPF+   L AR++ I+     
Sbjct: 65  LCKEVR-SYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLKARMKRIL--QEK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + IVTG LS++     V  +G  I L+  EY+++  L   KN  L+KE  L  ++D 
Sbjct: 122 SESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDS 181

Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +   + V I +LR K+ +      +I+TV G GY+ +E
Sbjct: 182 DGKYVDNNTVSVNISRLRTKIEDDVSKPKWIQTVHGIGYIWKE 224


>gi|239982264|ref|ZP_04704788.1| putative two-component system response regulator [Streptomyces
           albus J1074]
          Length = 225

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD  +  +I   L++E F V     G   ++  + ++ D +ILD+ L    G EV 
Sbjct: 2   LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGLEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R ++  +   PV +L+      D + GL  GADDY++KPF+  EL AR+  ++RR    A
Sbjct: 62  RRVQAQRP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERAA 120

Query: 124 -------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G+L ++   + V V    +HLT  E+ ++  L+      L++E  L 
Sbjct: 121 LAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLLA 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D  D    + +D  I  LR+K+     G   I TV G GY L 
Sbjct: 181 EVWDWADASGTRTVDSHIKALRRKI-----GAERIRTVHGVGYALE 221


>gi|110800300|ref|YP_696779.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|110674947|gb|ABG83934.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
          Length = 232

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGSIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
 gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
          Length = 241

 Score =  251 bits (643), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   +   L+  +F V       +  +      +  ++LDL L    G EV
Sbjct: 9   LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    + P+ +L+ MS   D++ GL+SGADDY++KPFN  EL+ARIRA++RR+   
Sbjct: 69  ARWLRSQ-DNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVDV 127

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +      I      ++   + +    G  + LTG EY ++  L  R N  LT++M 
Sbjct: 128 EDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDML 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L   +  P  + IDV I +LR+KL +       I+TV G GYVL    +
Sbjct: 188 LELLRGRQAGPFDRAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVLAAEVE 239


>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
 gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
           [Acetohalobium arabaticum DSM 5501]
          Length = 227

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 126/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED++ +A  +EL L+ E + V     GE+G+E     +FD ++LD+ L  + G E
Sbjct: 5   QVLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGME 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+      DKV GL  GA DYI+KPF  EEL+AR+R ++RR++ 
Sbjct: 65  ICRRVRKES-EIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKR 123

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   S++   +L +N + + V V    + LT KEY ++  L   K   L++E  +  ++
Sbjct: 124 DAGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +  I+DV+I  LR K+ +      YIETV G GYV++
Sbjct: 184 GYDYPGDTNIVDVYIRYLRSKIDDECKE-TYIETVRGVGYVIK 225


>gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 228

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I L+EDDK +A ++ L+L+SE F V       D + +    +FD  ++D+ L D  G
Sbjct: 1   MKQIFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAMLAGNKFDLALIDISLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S
Sbjct: 61  FTVCTEIKEIQ-DVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G + S      L +++ +  V+     + L+  EY+++ +      + +T+   L+ L+
Sbjct: 120 -GRSPSAFEVCGLHIDMASGVVKKDDSEVFLSALEYRLLLVFINNPKSIITRGRLLDELW 178

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 179 DAAGEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221


>gi|310822156|ref|YP_003954514.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395228|gb|ADO72687.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
           DW4/3-1]
          Length = 241

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L   ++  L+ E + V       +   L +  EF+ +ILD+ L    G+  
Sbjct: 14  ILIVEDDANLRLGLQDNLQDEGYEVATAASTAEADALLREREFELLILDVMLPGEDGYAF 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A + + V +L+  +  ED +RG ++GA DY++KP+   EL+AR+RA+VRR    
Sbjct: 74  CRRLRGAGLRSMVLMLTARTLEEDILRGFEAGAQDYLTKPYRLRELLARVRALVRRVGSP 133

Query: 123 AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              L+     S++L  + +    G  I LT  E+ ++  L   ++  L ++  L+ ++  
Sbjct: 134 PAQLMGFAGFSLDLGRRQLSRTGGALIELTRTEFDLLVFLLRHQDRALPRQEILDAVWGQ 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +D F+  L+KKL   +     I T+ G GY + 
Sbjct: 194 DVVVDPRTVDNFVSNLKKKLGWTSTSGFTIHTIRGVGYRME 234


>gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
 gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. actinidiae str. M302091]
 gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 227

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3]
 gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3]
          Length = 218

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 2/216 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +DD  +   + + L+ E F  Y    G D ++     + D +ILD+ + ++ GF+V   L
Sbjct: 2   DDDPHIRELVSVFLEREGFQTYEAIDGLDALKKIDEVKVDMVILDIMMPNMDGFDVCFEL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R      P+ +L+       KV+G   G DDY+ KPF+  ELV R++A+++R +      
Sbjct: 62  R-KYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           I  G++ +N     V        L  KE++++  L  +   T ++E  +  ++    E  
Sbjct: 121 IQVGNVLLNRKTFEVTAGEQTATLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYDFEGN 180

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + +DV I +LR+K       K  I+T+ G GY L 
Sbjct: 181 ERTLDVHINRLREKF-QVEKSKFSIKTIRGLGYRLE 215


>gi|311739823|ref|ZP_07713657.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311304896|gb|EFQ80965.1| two component system response regulator [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 123/220 (55%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L+SE         G D +   + +E D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    S P+ +L+  +   D V GL+SGADDYI+KPF  +EL+ARIRA +RR+  
Sbjct: 64  ICRAIRRES-SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++   DL +++   TV    G  ++LT  E+ ++  ++ R     T+E  L  ++ 
Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLESVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R+  + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 YRNASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  KLLSNIRKSKP-MPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 231

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +   +  +L  E + V     G +     + +++D ++LDL L  I G  +
Sbjct: 7   VLIVEDDIDINELLCNILIKEGYRVRGAYSGSEAKMCLEQFDYDIVLLDLMLPGICGENL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  +R  K+  P+ ++S  ++  DK+  L+ GADD++SKPF+  E+VAR+ A +RR +  
Sbjct: 67  IAEIRKVKV-MPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEF 125

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + ++  +++++LDA+   V+  ++ LT +E++++ELL        T+      
Sbjct: 126 SNSKEESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQT 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +   I+V +  LR KLS       YI+TVWG G+  +E
Sbjct: 186 VWNDEFLGDDNTINVHMSNLRSKLSEVDSETKYIQTVWGIGFKFQE 231


>gi|255308409|ref|ZP_05352580.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
          Length = 276

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 47  KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGI 106

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+  R++A +RR +
Sbjct: 107 EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 165

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +       +I  GD++++++   V    + I LTG+EY ++  ++   N  + KE   
Sbjct: 166 YQSIVPSDSEVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLY 225

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 226 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 272


>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
 gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ LA  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G 
Sbjct: 2   IKILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R +    PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRIRRSS-DIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+   +  
Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +       E  +IDV++  LR K+ +    K  I TV G GYV+++ 
Sbjct: 181 VCGYDYIGETNVIDVYVRYLRTKIDDVFKVKT-ITTVRGVGYVIKDE 226


>gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB
           [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 219

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F+V     G+ G        +DA++LDL L +I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLDLTLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS 
Sbjct: 61  AILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S +  G ++++  +    ++G  + L  KE+ ++ELL       L ++     LY 
Sbjct: 121 GQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPRKAIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|121606759|ref|YP_984088.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595728|gb|ABM39167.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 13/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  +   L+   + V V           +   FD ++LDLGL D  G 
Sbjct: 1   MRILVVEDDAGIAVGLRTNLQQRGYAVDVCGTLASAWAALRSEPFDLVLLDLGLPDGEGG 60

Query: 61  EVLRALRVAKIS--------TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            +L  +R +  +        TP+ IL+    + D++ GL  GADDY+ KPF+ +EL AR+
Sbjct: 61  RLLERVRQSPSAAGSLPDTLTPILILTARDQVADRISGLNLGADDYLVKPFDLDELEARM 120

Query: 113 RAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           RA++RR+ G A  L+  GDL ++  A +V   G  + LT +E+ ++ LL   +   L+++
Sbjct: 121 RALLRRAAGRAHPLLAHGDLVIDPAAHSVLRAGQPVELTPREFALLLLLLESRGRVLSRQ 180

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                LY   D      ++V +  +R+KL  +      I+TV G GY
Sbjct: 181 QLEARLYSWDDGVGSNAVEVHVHHVRRKLGES-----LIQTVRGVGY 222


>gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842]
          Length = 221

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ 
Sbjct: 3   HILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+  
Sbjct: 63  ICKIMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN +
Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 182 WGYEHYGDVRVIDTHIKNLRKKLGIT-----YIKTVKGIGYKIE 220


>gi|226948577|ref|YP_002803668.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841560|gb|ACO84226.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  G
Sbjct: 1   MKSILLVEDNMSLNRGIQFSLMKEGYNVIATDSIKESQQKLNKEKVDLIILDINLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+
Sbjct: 61  FDYCLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRT 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I + D+   ++   +E  G  I L+  E ++++         L+KE  + +L
Sbjct: 120 SNDCDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENL 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +      + V I ++R+K+        YI+T+ G GYV +E
Sbjct: 180 WNIDGEFINENTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 235

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 112/219 (51%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++   +E  L+ E + V     G + I   +       ILD+ +    GFE
Sbjct: 16  RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGPDGFE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L+    +  V +L+   +I+D+V+GL  GADDY+ KPF+ EEL+ARI A VR    
Sbjct: 76  VCRMLKSMG-NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRNQFP 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                   G   ++   K +  +G  + L+  EY+++  L       L+K   L+H++  
Sbjct: 135 SLLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLVLSKAQILDHVWGY 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +  I++V+I  LR+KL +    +  I T+ G+GY 
Sbjct: 195 DFNGQDNIVEVYISALREKLGD--RDRTLIRTLRGQGYR 231


>gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU]
 gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
 gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii
           1656-2]
 gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6014059]
          Length = 220

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            + QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|169824516|ref|YP_001692127.1| two-component response regulator [Finegoldia magna ATCC 29328]
 gi|167831321|dbj|BAG08237.1| two-component response regulator [Finegoldia magna ATCC 29328]
          Length = 239

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K ++++ +  L+ E F V     G++ I++    ++  IILDL L  I G 
Sbjct: 9   IKILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGE 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  +R ++  TPV +++     ++ + GL+ GADDYI+KPF+ + LV +++ I+RR  
Sbjct: 69  KVMEVIR-SRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G +S++ D  T    G  I LT  E+Q+I+ L    N   T++  +
Sbjct: 128 KLGLPKSDKIYFDNGRVSISFDDNTFIKDGESISLTSNEFQIIKTLFSNPNKIFTRDEII 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    E   + ID  I  +R K+ +      YI+T++G GY L
Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 227

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|311107856|ref|YP_003980709.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
 gi|310762545|gb|ADP17994.1| transcriptional activator protein IrlR 4 [Achromobacter
           xylosoxidans A8]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 75/230 (32%), Positives = 125/230 (54%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IED+K LA  +   L   N+ V V   G  G+ L +  ++D ++LD+ L  + GF
Sbjct: 1   MKVLVIEDEKKLAEYLRRALTEHNYVVDVALDGVTGLHLVRESQYDLVLLDVMLPAMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            VL  +R      PV +L+    +ED+V+GL+ GADDY++KPF   EL+AR+ A+ RRS 
Sbjct: 61  SVLAEIRKTS-RVPVLMLTARDKLEDRVKGLRDGADDYLAKPFALSELLARVLALGRRSG 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  AQ+++    L ++L  +     G R+ LT KE+ ++ LL  ++   L++    
Sbjct: 120 HGQTETIAQNVLRIDGLELDLLRRRASRDGVRLDLTAKEFTLLALLMRKQGEVLSRLELA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++D        +++V I +LR K+ +    K  + TV G GYVL   +
Sbjct: 180 EQVWDINFNSNTNVVEVAIRRLRGKV-DEPFDKKLLHTVRGMGYVLEPRS 228


>gi|282899307|ref|ZP_06307276.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195764|gb|EFA70692.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 240

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 50/224 (22%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD ++ + +   L  + +       G+  + L + +    +ILD  L D+ G++
Sbjct: 10  KIMVVDDDFSVRNLVHRFLSRK-YKTEAAADGKSAMALFEQFNPSLVILDWNLPDVNGYK 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +  ++ +  V +L+  +   DK++ L  GADD+++KPF+  E+  R+ A++RR R 
Sbjct: 69  LCQDM-QSRTNVLVLMLTSRNDETDKIKVLAGGADDFMTKPFSLAEVEVRVDALLRRIRY 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   ++   L++N + + V +    + LT  E+ ++  L+       ++   +  +
Sbjct: 128 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + +++DV I +LRKK+   +    +I+TV G GY   
Sbjct: 188 WGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 231


>gi|186475207|ref|YP_001856677.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184191666|gb|ACC69631.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 253

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGAEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVKHGSLSFDQVGRIAYANDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|17549417|ref|NP_522757.1| two component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431670|emb|CAD18347.1| probable two component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 245

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+    H + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFSFGPFRLNFRMRTLFRGEHALSISDTEFALLKLLVTHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +Y        + IDV + +LR+ L   A    YI+TV GRGY    + +D
Sbjct: 185 ELMYGPGSSVSDRGIDVQVWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERD 236


>gi|15596354|ref|NP_249848.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100607|ref|ZP_01364525.1| hypothetical protein PaerPA_01001632 [Pseudomonas aeruginosa PACS2]
 gi|116049089|ref|YP_792109.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218892879|ref|YP_002441748.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254234291|ref|ZP_04927614.1| hypothetical protein PACG_00130 [Pseudomonas aeruginosa C3719]
 gi|254239527|ref|ZP_04932849.1| hypothetical protein PA2G_00141 [Pseudomonas aeruginosa 2192]
 gi|296390473|ref|ZP_06879948.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313106129|ref|ZP_07792384.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9947080|gb|AAG04546.1|AE004546_1 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115584310|gb|ABJ10325.1| probable two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126166222|gb|EAZ51733.1| hypothetical protein PACG_00130 [Pseudomonas aeruginosa C3719]
 gi|126192905|gb|EAZ56968.1| hypothetical protein PA2G_00141 [Pseudomonas aeruginosa 2192]
 gi|218773107|emb|CAW28919.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310878886|gb|EFQ37480.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 236

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L+     V +   G            D ++LDL L    G  
Sbjct: 7   RILIVEDDRRLAELTREYLEGNGLKVDIEANGALAAARILAERPDLVVLDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RRS  
Sbjct: 67  ICRQVRPQ-FDGPILMLTARTDDMDEVLGLEMGADDYVCKPVRPRVLLARIRALLRRSEA 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G L ++   +   + G  I LT  E+ ++ LL+      L++E  
Sbjct: 126 PEAGAPAADSKRLAFGRLVIDNAMREAWLDGTTIELTSAEFDLLWLLAANAGRILSREEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            N L     + + + IDV I ++R K+ +       I+TV  +GY+  
Sbjct: 186 FNALRGIEYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLFV 233


>gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++ +L++  ++V + D G   + L   + +D  I+D+GL  + GF
Sbjct: 1   MRILIVEDDSRLLTQLDTLLQTNGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R   ++ P+ IL+     ++KV GL +GADDY++KPF  EEL+AR++A++RRS 
Sbjct: 61  EVIQKARKNSVTCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S+N  ++ V V G  I LT  EY++ E L L     ++K     H+YD
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VF+ +LRKKL +  G  N IET+ GRGY +
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPEGKINPIETMRGRGYRI 220


>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 230

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 6/226 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D+  +   +   L  E++       G + +   +    D +ILDL L D+ G
Sbjct: 1   MKTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLMLPDMEG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V + +R    S P+ +L+   +   ++ G  +GADDYI KPF+  E++ARI+A++RR 
Sbjct: 61  ERVCQEIRTFS-SVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRRG 119

Query: 120 RGHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     +   G L +N     V   G  I+LT  EY+++ LL+       ++E  +
Sbjct: 120 DDSKLLADVIVYHQGRLVINSLKHEVTCDGQVINLTPSEYKLLLLLAKYPQRNFSREELV 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + +       +++IID  I  LR+K+   +    YI TV+G GY  
Sbjct: 180 DRVLGCDFIGDIRIIDQHIKNLRQKIEPDSRQPQYIITVYGFGYRF 225


>gi|168215727|ref|ZP_02641352.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182382020|gb|EDT79499.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 232

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPTLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    + L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEFIIGPIKIKRQSRKVYLNEEEVRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED++ LA  I   + +E + V V   G  G+ L +   +D IILD+ L  + GF
Sbjct: 1   MKILLVEDEERLASFIRKGISAEGYEVEVAHDGRTGLSLFRRDIYDIIILDVNLPHMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R    + PV +L+ + S+ DK  G  +GADDY++KPF  +EL+ R+RA+ RR  
Sbjct: 61  DLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++   DL +NLD+KTV   G RI LT +EY ++E + L K   +++      ++ 
Sbjct: 121 SRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    +IDV++  LRKK+ +       + T+ G GYVLRE+
Sbjct: 181 LNFDNNSNVIDVYVSYLRKKI-DKGFSPKLLHTIVGMGYVLRED 223


>gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 231

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           MRILL+ED+  L ++I+  L   N+ V     GE+  +L +     +   I D  L  I 
Sbjct: 1   MRILLVEDENDLGNAIKRALIQHNYIVDWAQDGEEANDLIEIGLNLYTIGIFDWLLPKIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++ +R      P+ +L+     EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GIDLIKKIRQQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEV-----QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   +  G ++++    T+           + LT KE+Q++E      N  +T++ 
Sbjct: 121 FPTINPQKLTVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIITRDQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ L++  +EP   ++   I  LR+KL   +G +N IETV+G GY  
Sbjct: 181 ILSQLWEWGNEPMSNVVAAQIRLLRRKLEP-SGMENCIETVYGLGYRF 227


>gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
 gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42]
          Length = 240

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD+ + + +    + E F N+     G + +        + I+LD+ L D  GF
Sbjct: 7   KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R +  + P+  L+  ++  DK++G   G DDYI+KPFN  E+VAR++A ++R  
Sbjct: 67  TLCSKIR-SHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMT 125

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             + S             ++ +   + V G RI    +E +++       N  L+K    
Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             ++          + V + +LR+KL        +I+TV G+GY+      DE
Sbjct: 186 KDVWG-EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFEAEPIDE 237


>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
 gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
 gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
           3626]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G E
Sbjct: 3   KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRIRKVS-EVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ +  +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV++  LR K+ +    K  I TV G GYV+++ 
Sbjct: 182 CGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKDE 226


>gi|87118795|ref|ZP_01074694.1| two-component system, regulatory protein [Marinomonas sp. MED121]
 gi|86166429|gb|EAQ67695.1| two-component system, regulatory protein [Marinomonas sp. MED121]
          Length = 223

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 134/223 (60%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L  +I   +  +   V +   G D  ++ +  E+D ++LDL L  + G 
Sbjct: 1   MRILVVEDDDVLGEAISQRMLKQGHGVDLATSGADANDILRHQEYDLVVLDLNLPGMNGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LRV + +TPV IL+  + +ED+++ L  GADDY++KPF+  E  AR RA++RR +
Sbjct: 61  QVLNKLRVRQTNTPVLILTARNQVEDRIQLLDLGADDYLTKPFDFGEFDARCRALLRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ++I  G+LS++  A  V V    + L  +E++++E+        L+K+  ++HLY+
Sbjct: 121 GQAQNVISYGNLSLDRKACCVYVDQVLVDLKQREFRLLEIFITHTGWVLSKDDLIDHLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + P    I++++ +LRKKL  +A     I T+ G GY+L E
Sbjct: 181 FDEPPSPNAIELYVARLRKKLQTSAVE---IRTLRGLGYILEE 220


>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
 gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
          Length = 231

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L   ++ +L  E F V   + GE+G+EL    + D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL-SNDIDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++ 
Sbjct: 62  TLKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQS 120

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            A          I   D+ +    +    QG  + LT  E+ ++         TLTKE  
Sbjct: 121 SANGKQGKNSDCIEYQDIQIYPGKQEAYCQGELMVLTTTEFALLSHFVQNPGQTLTKEAL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +   R     + ID+ +  LRKKL     GK+ I+T+ GRGY+L E 
Sbjct: 181 SLDVLGKRLAAFDRAIDMHVSNLRKKLPERKDGKSRIKTLRGRGYLLVEE 230


>gi|260102559|ref|ZP_05752796.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
 gi|260083634|gb|EEW67754.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
          Length = 234

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 116/233 (49%), Gaps = 15/233 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGFEV 62
           ++EDD ++A  + +  K E +   +   G + +++ K    ++D I LDL L    G +V
Sbjct: 1   MVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGIQV 60

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    + P+ +L+   S  D+V GL  GAD+Y++KPF+   L+ARI+A+ RR    
Sbjct: 61  AKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMME 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGH-RIHLTGKEYQMIELLSLRKNTTLTK 171
                    + +  I T  L ++ D + V       + LT KE+ ++  ++ +     ++
Sbjct: 121 EDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVFSR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +  L+ ++      E + +D  I KLR+KL         I+TVWG GY   ++
Sbjct: 181 DQLLDLVWGYEYYGEERTVDAHIKKLRQKLEKVGA--KVIQTVWGVGYKFDDS 231


>gi|257454340|ref|ZP_05619603.1| transcriptional regulatory protein RstA [Enhydrobacter aerosaccus
           SK60]
 gi|257448243|gb|EEV23223.1| transcriptional regulatory protein RstA [Enhydrobacter aerosaccus
           SK60]
          Length = 235

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 111/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ LA   +  L+    +V +   G   I      + D ++LD+ L    G  
Sbjct: 9   RVLIVEDDERLATLTQDYLRKNGLDVAIETDGNRAIRRIVAEQPDMVVLDVMLPGSDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RRS  
Sbjct: 69  VCREVRP-HFHNPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRSDT 127

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL ++   ++V +    +  T  EY ++ LL+      L++E     
Sbjct: 128 APTDEVPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   + + ++    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
 gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM
           4541]
          Length = 233

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+  L   +   L++  +   +   G++ I   + +  D I+LDL L  + G  
Sbjct: 10  HILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLMLPGMDGIS 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +++  +   D++ GL+ GADDY+ KPF+  E+VAR++ I+RR + 
Sbjct: 70  VCRELRKFS-DVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQN 128

Query: 122 HAQSLI--VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +      L ++ +A  V      + LT  E+++++ LS    T  +++  L+ LY
Sbjct: 129 THTHSLEQQQKQLVIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILY 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D       + ID  +  LR+KL      K +I +++G GY   E
Sbjct: 189 DDHRIVTDRTIDSHVKNLRRKLEFLDPEKTFIRSIYGLGYRWDE 232


>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
 gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
          Length = 243

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 116/236 (49%), Gaps = 12/236 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   + ++L+SE + V   + G  G++L      D +ILD+ +  + G +
Sbjct: 10  KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDET-IDLVILDIMMPKLNGLK 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V   +R    + PV  L+  S   DK+ GL  G DDY++KPF+  EL+ R++A++RR + 
Sbjct: 69  VCEEIRKTS-NVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQV 127

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     A+ +I  G + +N     +   G+++ ++  EY+++ L+        + +
Sbjct: 128 YQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQ 187

Query: 173 MFLNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                ++           + V I KLR K+        YI+TVWG+GY   +   D
Sbjct: 188 NIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFEDATVD 243


>gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii
           ATCC 17978]
          Length = 220

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|254975018|ref|ZP_05271490.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255092407|ref|ZP_05321885.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255516824|ref|ZP_05384500.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255649926|ref|ZP_05396828.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683080|ref|YP_003214365.1| two-component response regulator [Clostridium difficile CD196]
 gi|260686678|ref|YP_003217811.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520011|ref|ZP_07406358.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260209243|emb|CBA62540.1| two-component response regulator [Clostridium difficile CD196]
 gi|260212694|emb|CBE03775.1| two-component response regulator [Clostridium difficile R20291]
          Length = 241

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++  I+  L+ E F++ ++     G E+    E+  I+LD+ L D  G+E
Sbjct: 10  KLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR   
Sbjct: 70  LCKYIRGFS-QVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  GDLS+      V      I LT  EY+++ +L   KNT L++   L  L
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   D      + V+I +LR+K+ +      YIETV G GY  
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKW 232


>gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152]
 gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L++E + V+  + G++ I+  K      I+LD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R  K   +  +  L+       +V G ++GADDYI+KP   + LV++I++++RR
Sbjct: 66  EACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRR 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   ++  +  GD+ ++ D   V   G +I L  KE+++  LL+ + +    +E+ L+
Sbjct: 126 LKSEEESEETLKLGDIVIDRDEYVVYKAGKKIALPRKEFELFSLLTSKPSKVFKREVILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I KLR+K+ +      + +TV G GY   
Sbjct: 186 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 226


>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 4/230 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR I+++ED+ A++  +   +K   +   V   GE  +E     +   I+LD+ L  + G
Sbjct: 1   MRTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +EVLR +R  + + PV +L+    I D++ GL SGADDYI KPF   E++ARI+AI+RR 
Sbjct: 61  WEVLREVR-NRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRP 119

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G L ++  +++V + G  + LT K+  ++  L+   N    +E  +  
Sbjct: 120 SHALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIER 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++    +   + +D  I +LR+ L         I T+ G GY    N  D
Sbjct: 180 VWGIDYDGSDRAVDHAIKRLRQSLHPMPPEDGGIRTLRGTGYQFYANGAD 229


>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
 gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CMC 3f]
          Length = 248

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 24  ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 84  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 143

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 144 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 203

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 204 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 246


>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
 gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
 gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
 gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +   +  +    ++ V     GE  ++  K  + D +ILD+ +  + GFE 
Sbjct: 5   ILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKT-QVDLVILDIMMPKMDGFEF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R   I  P+  LS   S  DKV+G   G DDYI+KPF  +EL+AR+ A +RR +  
Sbjct: 64  CKVVREQ-IKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREKRE 122

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q+    G+L++N     V + G +I +T KE++++ELL++      +KE     ++
Sbjct: 123 RVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 ++  I V I  LR KLS       +I+TVWG GY L +
Sbjct: 183 GLDAVGDLNTIIVHINNLRAKLS-LGMSTYHIKTVWGVGYKLEK 225


>gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 214

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 124/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD+ +   I+  L ++ + V V   G +G+       FD ++LD+ + ++ GFEV +
Sbjct: 1   MIEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
 gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           V10Sc8a]
          Length = 244

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL+ ED+ A+   + + LK   ++V         ++    Y    D  +LD+ +  + G
Sbjct: 3   RILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R LR    +  + +LS  S   DK+R L  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  SELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +++G  S+N  ++     G  I +T  EYQ++E       + L + 
Sbjct: 123 SLSVARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRR 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L H++      + KI+DV I +LR K+        YI T+WG GY  
Sbjct: 183 SILTHIWGNDYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGYKW 231


>gi|154487500|ref|ZP_02028907.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
 gi|154084018|gb|EDN83063.1| hypothetical protein BIFADO_01355 [Bifidobacterium adolescentis
           L2-32]
          Length = 224

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+  LA +I   + +E +   V   G   ++       D +I+D+ L  + G E  +
Sbjct: 1   MVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGLEATK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            +   +   PV IL+      DKV GL +GADDY++KPF+  EL+AR +A++RR      
Sbjct: 61  RIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRAKV 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + L+  G L ++   + V V G ++HLT  E+ ++  L+ +  + LT+E  L 
Sbjct: 120 IAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKLLE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D  D    + +D  +  LR KL     G   I TV G GY      +
Sbjct: 180 EVWDWVDASGTRTVDSHVKALRHKL-----GSKTIRTVHGVGYAFEPPEE 224


>gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.]
          Length = 229

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   +   L+S  + V     G   + + K  EF A+ILDL L DI G 
Sbjct: 1   MRILLVEDDVMLGDGMVDALRSSGYTVDWLQQGLPALSVLKSEEFAALILDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR    + PV IL+   +++D+V GL +G+DDY+ KPF  +EL AR+RA+VRRS+
Sbjct: 61  SLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQELNARLRALVRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++   +L +  +++ V  +G  + LT  EY++++ L  +    L+K+     LY 
Sbjct: 121 GQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSGRVLSKDQLQQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  E   ++V I  LRKK  +       I  + G GY++
Sbjct: 181 WDEGAESNAVEVHIHHLRKKFYSD-----LIRNIRGVGYII 216


>gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1]
 gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1]
          Length = 226

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 80/230 (34%), Positives = 123/230 (53%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +LK   F V   + G DG+       FD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  K   PV I+S    +E++V GL  GADDY+ KP+  +EL+ARI A++RR+  
Sbjct: 63  VLKQIRQ-KTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++  G++ +N++      QG  I L+ +E+ ++  L    N   +K    
Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + LYD   E     I+V+I  LR KL     GKN+I T+ G GY L + +
Sbjct: 182 DKLYDFDSEVTSNTIEVYIHHLRSKL-----GKNFIRTIRGLGYRLGQTS 226


>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 258

 Score =  251 bits (642), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 106/242 (43%), Gaps = 9/242 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+     I   L++   +V     G +   +   +  D II+DL L D  G  +
Sbjct: 17  ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLSL 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      P+ +L+      D++ GL+ GADDY++KPFN  EL+ARI A++RR    
Sbjct: 77  CRKVRARS-QVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQASA 135

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S     +        ++   + +    G R+ LT  E+ ++     R    L++E+ 
Sbjct: 136 LNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVLSREVL 195

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           L            + IDV + ++R+K+         I+TV   GY+     +        
Sbjct: 196 LELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTPVVEPIATAPAS 255

Query: 235 TA 236
           + 
Sbjct: 256 SP 257


>gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces
           albus J1074]
 gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074]
 gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E + V V   G +G+       +D ++LD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G  A  +   G L V+  A+ V+  G  + LT KE+ ++E L LR    ++K   L H++
Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL     G   I TV G GY L 
Sbjct: 181 DFAYDGDPNIVEVYISALRRKL-----GAQAIRTVRGMGYRLE 218


>gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 214

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V VT  G +G+       FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYTVVVTSDGLEGMTQFNKQSFDLILLDVMMPNLNGFEVSK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GHA 123
            +R    + P+ +L+ +   ED+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            + +V  ++ +++DA  V V    I LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 NNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVWGYDY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +IID  I  LRKKL+       YI+T+ G GY + E
Sbjct: 180 FGETRIIDTHIKNLRKKLAI-----PYIKTIKGIGYKIDE 214


>gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 228

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+K +A  +   L++E + V+    GE+G+++    + D ++LDL L  + G 
Sbjct: 1   MNILIIEDEKRVADIVAKYLENEKYRVFTCYSGEEGLKVFLDEKIDVVLLDLMLPGMQGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R    +  + ++S   ++++KV G   GAD+Y+ KP +  E+VAR+ A+  R  
Sbjct: 61  EICKKMREIS-NVYIFMISAKGTLDNKVGGFNLGADEYLVKPISPREIVARVNALKTRKE 119

Query: 121 GHAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +     G+L +  + + V   G  I LT  E+ ++  L+        +E  ++ 
Sbjct: 120 RENNEELCIFDKGNLKIYPETRMVISYGKDIVLTPNEFDILYHLAKSPGRVFXREQLIDA 179

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   + IDV I  +RKK+        + +TV G GY  
Sbjct: 180 VMGIDXDGFDRTIDVHIKNIRKKIELDTKSPKFXKTVTGIGYKF 223


>gi|83745618|ref|ZP_00942676.1| OmpR [Ralstonia solanacearum UW551]
 gi|83727695|gb|EAP74815.1| OmpR [Ralstonia solanacearum UW551]
          Length = 245

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+      D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+    H + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFGFGPFKLNFRMRTLFRGDHALSISDTEFALLKLLVTHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +Y        + IDV I +LR+ L   A    YI+TV GRGY    + +D
Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERD 236


>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
 gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
 gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
           [Desulfitobacterium hafniense DCB-2]
          Length = 228

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 109/224 (48%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  L   I   L    +       GE  +EL      D +ILD+ L  + G+ 
Sbjct: 7   KVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSVDLVILDIVLPKVDGWS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ IL+  S  +D + G + GADDY+ KP++   L+A+++  + ++  
Sbjct: 67  VCRRIRRNSG-IPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLEKTSD 125

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + + I  G + +NL ++ V V+G  I+LT  E++++  L   K   +T+E  +  L+ 
Sbjct: 126 TVEEMQISAGGILLNLGSRCVSVEGDPINLTHTEFEILAYLMQNKGLVITREQLITKLWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + K ++  I  LR KL +       I TV   GY   E 
Sbjct: 186 YDFYGDEKTVNSHIRNLRSKLGSKGSS---IVTVIRSGYKFTEE 226


>gi|309778833|ref|ZP_07673604.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
 gi|308922357|gb|EFP67983.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
          Length = 242

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 6/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            LR LR      PV +L+  S   D++ GL+ GADDY+ KPF+  EL+ARI A++RR   
Sbjct: 65  ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRLA 124

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S    +     G   +N   +T+      + ++  E+ +++LL       LT+E  +
Sbjct: 125 VPASAPEDRDSFSFGPFKLNFRMRTLFRGDSALSISDTEFALLKLLIGHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             +Y        + IDV I +LR+ L   A    YI+TV GRGY    + ++E  E
Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLEEDAQRPRYIQTVRGRGYTFVPDEREEVDE 240


>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 242

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   +  +L S   +      G D +++     FD +++D+ +  + GFE
Sbjct: 12  KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGFE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR      P+  L+      D V GL  GADDYI KPF   ELVARIRA +R    
Sbjct: 72  LCANLRQV-TDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLRTPSA 130

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++VT D  +N       + G R+ LT KE+ ++  L+ R    ++        
Sbjct: 131 GAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEPVSARDLYERA 190

Query: 179 YDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +      + V I  LRKK ++    + +I+TVWG GY L
Sbjct: 191 WGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRL 234


>gi|223940723|ref|ZP_03632561.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
 gi|223890614|gb|EEF57137.1| two component transcriptional regulator, winged helix family
           [bacterium Ellin514]
          Length = 231

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L++  + V+    G+ G+        + ++LDLGL D+ G  V
Sbjct: 10  VLVIDDEVQIRRLLRVSLEANGYRVFEAANGQTGLVEAAQRRPEVVLLDLGLPDMDGVTV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR      PV ILS     +DKV  L  GADDY++KPF   EL+AR+R  +R S+  
Sbjct: 70  LKRLREWS-QVPVVILSVRDREDDKVAALDHGADDYLTKPFGTAELLARLRVALRHSQSA 128

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +  +G L V+L A+ V+V G  + LT  EY +++L        LT    L  ++  
Sbjct: 129 PDDALFKSGPLEVDLVARQVKVNGKPVKLTATEYSLLQLFVRHAGKVLTHRQILKEVWGP 188

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   + V++  LR+K+         + T  G GY L 
Sbjct: 189 NYLEQTHYLRVYMTHLREKIEATPSQPKLLLTESGVGYRLV 229


>gi|158319439|ref|YP_001511946.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139638|gb|ABW17950.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D++++   +   L +EN+ +     GE+ +E  +   FD IILD+ L D  GFE
Sbjct: 5   KILIIDDEESIRKLVRRSLINENYLIEEASNGEEALERLRNNTFDLIILDVVLGDEDGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ ++V  I TP+  +SG     D++ GL  GA +YI+KPF+   L A ++A +R SR 
Sbjct: 65  LIQEIKVLGIKTPIIFVSGRCEDHDQILGLGLGATNYITKPFSPAILCAHVKAQLRTSRE 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  + + I+ G    +L    +      I L+ KE  +I+          TKE   
Sbjct: 125 YVAEKTRSSNYIMEGPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQLY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++++     +   I V+I +LRKKL +      +I TVWG GY  
Sbjct: 185 ENIWN-NSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYKF 229


>gi|226305655|ref|YP_002765615.1| two-component response regulator MtrA [Rhodococcus erythropolis
           PR4]
 gi|229489658|ref|ZP_04383521.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
 gi|226184772|dbj|BAH32876.1| two-component response regulator MtrA [Rhodococcus erythropolis
           PR4]
 gi|229323755|gb|EEN89513.1| response regulator, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/219 (32%), Positives = 118/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F+ YV   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTLALAAVRETRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   D+ +++ A  V     +I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGSEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221


>gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           tomato T1]
 gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +++     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DSSVAFKPIETVRGMGYLFNE 222


>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
 gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           +R   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|330824770|ref|YP_004388073.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|329310142|gb|AEB84557.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 227

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 128/228 (56%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    +   +   G DG+ +     +D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGEYLRQGLSEAGYVADLVPHGTDGLHMALHGAYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR+ 
Sbjct: 61  QVLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRAP 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +++ +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGNEAMVLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D   + +  +I+V + +LR K+ +       I+TV G GYVL    ++
Sbjct: 181 DMNFDSDTNVIEVAMRRLRMKI-DEGHPIKLIQTVRGMGYVLDVPQEE 227


>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     + V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRNKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
 gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
           DSM 15981]
          Length = 243

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 114/230 (49%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GF 60
           ++L+++DD A+   +  +++   F       G++ + L +  +FD I+LD+ +  +  GF
Sbjct: 15  KVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGVDDGF 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + +R+LR      P+ ILSG +   D + GL  GADDYI+KPFN   L A+I+A++RR++
Sbjct: 75  DAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNK 134

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               +A + I  G    +            I L+ KE  M++L         TKE     
Sbjct: 135 KAAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYEL 194

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++      +   I V+I  LR K+ +      YI+TVWG GY    N  +
Sbjct: 195 VWG-NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTVNEGE 243


>gi|150015084|ref|YP_001307338.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149901549|gb|ABR32382.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ L+ EN  V+  + G + +++ +  +   IILD+ +    G   
Sbjct: 4   VLVVDDEKEIRDAIEIYLRGENLKVFKAEDGLEALDILEKEKIHLIILDIMMPRFDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R ++ + P+ +LS      DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  CLKIRESQ-NLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL ++  AK + ++G  + +T  EY+++ LL+       + +    H
Sbjct: 123 LNVEEGKDIIKVKDLVIDTVAKKITLRGEDVKVTATEYKILYLLASNLGKVFSIKEIYEH 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        YI+ VWG GY + + 
Sbjct: 183 VWEEIFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEKE 229


>gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 114/223 (51%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK +A  +E  LK E F+  V         + +  +F+  + DL L D  G+
Sbjct: 1   MKILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDNKFNLCLFDLSLPDGSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R  K  TPV  L+      + V GL  GADDYI+KPF   EL++RIR+++RR  
Sbjct: 61  ELCKLVRE-KDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYG 119

Query: 121 GHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             + S  ++   ++ +N     V      I LT  EY+++ + +      L++   L  +
Sbjct: 120 KDSSSKAILELNNIRINTLDAKVYKNDAEITLTALEYRLLLIFANNPGQVLSRNQILEGI 179

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   D      + V+I ++R+KL +       I+TV G GY 
Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLEDDPQKPTIIKTVRGLGYK 222


>gi|331268264|ref|YP_004394756.1| winged helix family two component transcriptional regulator
           [Clostridium botulinum BKT015925]
 gi|329124814|gb|AEB74759.1| two component transcriptional regulator, winged helix family
           [Clostridium botulinum BKT015925]
          Length = 216

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD A+   IE+ L+   + V     GE+  E+    + D ++LD+ L  I GF
Sbjct: 1   MRILVVEDDLAIGDLIEINLQMSGYEVLKAIDGEEAKEVFDKEDIDLVLLDVMLPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ ++      PV  L+  +S+ DKV+GL+ GADDYI KPF   EL+ARI  + RR  
Sbjct: 61  QLIKYIKKK--DIPVIFLTAKNSVIDKVKGLRLGADDYIVKPFENIELLARIEVVERRYN 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   ++ V+++ + V++ G  + LT KE+Q++ L    KN  L++E  LN ++ 
Sbjct: 119 KD-DKIIKFKNIEVDINKRIVKLNGDYVELTLKEFQLLLLFIKNKNIALSREQILNKVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +D+ + +LR+KL         I+T++  GY L+E
Sbjct: 178 YDYVGETRTVDIHVNRLREKLDLRNN----IKTIFKVGYRLQE 216


>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 111/228 (48%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    + LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   A    YI TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGN 228


>gi|226953556|ref|ZP_03824020.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
 gi|226835693|gb|EEH68076.1| two-component regulatory system response regulator [Acinetobacter
           sp. ATCC 27244]
          Length = 238

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
 gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
          Length = 222

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           +IL++EDD  +   +   LK        TD  ++ +E+ K    F   +LD+ L ++ G 
Sbjct: 3   KILIVEDDLDMQKLLVDYLKKSGMEAVATDSPKEALEMLKSKQNFHLAVLDIMLPEMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + +R      P+ + S    I  K+ G + GADDY++K +   ELVARI A+++R  
Sbjct: 63  ELCKKMREIS-DLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G+L V+ + + V + G+ I LT  E++++ LL   K    ++E     +  
Sbjct: 122 --ANQVLRCGELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  ++ ID  I  LR KL + A    YI++VWG GY  
Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220


>gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2]
 gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2]
          Length = 219

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ LA  +   L+ E ++       +  +      E D IILDLGL D+ G 
Sbjct: 1   MRVLIVEDDQLLAQGLLHTLRHEGYSADHCATAKSALFAIDMAEADLIILDLGLPDMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R    + PV +L+     +DK++GL  GADDY++KPF   EL+AR+R + RR  
Sbjct: 61  ALLKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S +  GD+++NL A TV   G  + L  KEY +++ L        ++E     LY 
Sbjct: 121 KFASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E     ++V I  LRKKL        +I+TV G GY+
Sbjct: 181 WGEEVSSNAVEVHIHHLRKKLPEG-----FIKTVRGIGYI 215


>gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 232

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD A+   I   L   NFN+ V   G  G+E+     +D IILD+ L  + G 
Sbjct: 1   MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGSYDLIILDVMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V R +R  K + P+ ILS +   ED V G +S ADDY++KPFN EEL AR+    R+  
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+    S +   DL+++  +K  + Q   I LT  E++++E L   +   +++   L 
Sbjct: 121 QTSKVEENSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++         ++DV+I  LR K+ +    K  + TV G GYVLR+
Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRD 226


>gi|296122126|ref|YP_003629904.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296014466|gb|ADG67705.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 230

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED++ +   ++  L +E + V     GE+G+ +      D +ILDLGL D+ G +
Sbjct: 7   HILIIEDEQPIRRFLKASLSNEGYRVSEAVAGEEGLRMASAQPPDLVILDLGLPDLDGQD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ LR    ++PV +LS       K++ L SGADDY++KPF   EL+AR+R  +R +  
Sbjct: 67  VLKRLREW-YTSPVIVLSARDQETQKIKALDSGADDYLTKPFGIGELLARMRTAMRHAHR 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +    G L V+L A+ V      +HLT  EY+++  +       LT    L  ++
Sbjct: 126 VGPEATTATIGALRVDLAARLVYRSDKEVHLTPLEYKLLVTMIKHAGKVLTHRFLLREVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +D  E   + VFI  +R+KL +      YI T  G GY L
Sbjct: 186 GPQDSQENHYLRVFIASMRRKLEDDPARPRYILTEQGVGYRL 227


>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
          Length = 214

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
 gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family
           [Ilyobacter polytropus DSM 2926]
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K ++  ++L L+ E ++V +   G   ++L     ++ I+LDL L  + G E
Sbjct: 3   KILIIEDEKKISRYLQLELEHEGYSVDIASDGIMALKLFGENFYNIILLDLMLPKLSGEE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  K   PV +L+       K+  L  GADDYI+KPF   EL+ARIR  +R ++ 
Sbjct: 63  VCRRIR-KKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    +I    + ++L+ K V VQ   I LT  E+ ++  L L +   L++E  LN+++
Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   KI+DV+I  LRKK+      K  I TV G GY+L++ +
Sbjct: 182 GYDYNGGEKIVDVYIKSLRKKV--DFREKKLIHTVRGFGYMLKKES 225


>gi|307132852|ref|YP_003884868.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
 gi|306530381|gb|ADN00312.1| Response regulator of the two-component transcriptional regulatory
           system (PmrA-PmrB BasR-BasS) [Dickeya dadantii 3937]
          Length = 222

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   +   +++E +        ++   L     +  ++LDLGL D  G 
Sbjct: 1   MKLLIVEDDTLLQEGLLQAMRNEGYVCDCASTAKEADALITSAHYSLVVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R  +   PV IL+   +++D+V GL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  TLLNRWRRNRYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S I   +++++L+ + V +    I LT KE+ ++  L L+  + + +E+    LY 
Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D+P    ++V I  LR+K+     GKN I+T+ G GY+L +
Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI-----GKNRIKTLRGFGYLLTK 218


>gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces
           himastatinicus ATCC 53653]
          Length = 218

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 130/222 (58%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA S+   L++E F V V   G +G+   +   +D I+LD+ L  + G+
Sbjct: 1   MRLLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V  ALR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G L+V+  A+ VE  G  + LT KE+ ++E L++      +K   L H++D
Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  I++V++  LR+KL     G  +IETV G GY LR
Sbjct: 181 FAYDGDPNIVEVYVSALRRKL-----GPGFIETVRGAGYRLR 217


>gi|222111377|ref|YP_002553641.1| winged helix family two component heavy metal response
           transcriptional regulator [Acidovorax ebreus TPSY]
 gi|221730821|gb|ACM33641.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax ebreus TPSY]
          Length = 227

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    ++  +   G DG+ +    ++D +ILD+ L  + G+
Sbjct: 1   MKILIVEDEPKTGAYLRQGLSEAGYSCDLVPNGGDGLHMAIHGQYDLVILDVMLPGLNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
           +VL++LR   +  PV  L+    +ED+V+GL+ GADDY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  QVLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRRGH 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL ++L  + V   G R+ LT KE+ ++ELL  R    L + +  + ++
Sbjct: 121 AGSEGTTLRVADLELDLLRRRVSRNGRRVDLTAKEFGLLELLMRRHGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +       I+TV G GYVL
Sbjct: 181 DMNFDSDTNVIEVAMRRLRVKI-DEGHPVKLIQTVRGMGYVL 221


>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
 gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
           gamma proteobacterium HTCC2148]
          Length = 234

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+KA+   + + L+   +     +   D   L      D ++LD  L    G E+
Sbjct: 6   VLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWMLPGGSGLEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           LR L+    +   PV +L+  ++ ++ ++GL+ GADDY++KPF   EL+ARI+A++RRS 
Sbjct: 66  LRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRSA 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  AQ  I    L +N D++ V      ++L   E+ +++          ++   L+ ++
Sbjct: 126 KDSAQGRIGLNGLVLNSDSRRVFAGEIALNLGPTEFNLLQFFMSHPERAYSRSQLLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVL 221
                 E + IDV I +LRK L          I+TV G GY  
Sbjct: 186 GANVYLEERTIDVHIRRLRKALQTDHADYGELIQTVRGIGYRF 228


>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E3 str. Alaska E43]
 gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 235

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 127/226 (56%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDKA+ + I + L++EN+  +V + GE  I     Y  D +ILDLGL D+ G E
Sbjct: 5   QILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR   
Sbjct: 65  IIKKIRTWS-NIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINY 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +G   +L + GDL ++  A+ V ++   IHLT  EY++I LL+      LT    L
Sbjct: 124 VNGGQGENSNLFINGDLKLDYAARCVFIKDEEIHLTPIEYRLICLLAKNVGRVLTHNFIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + VF+  LRKK+        YI+T  G GY +
Sbjct: 184 KEVWGNTLPNDTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRM 229


>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 223

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 1   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
 gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB
           [Dechloromonas aromatica RCB]
          Length = 228

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+   + + LK   F V      E+     +    D +ILD  L    G  +
Sbjct: 5   ILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWMLPGQSGVAL 64

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + +R  + +   P+ +L+     EDKV+GL++GADDYI+KPF+ +E+VAR+RA++RR  
Sbjct: 65  AKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEMVARVRAVLRRRA 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            H A   +  G L++N     V   G  I L   E++++           T+   L+ ++
Sbjct: 125 PHLAGEAVEIGTLALNPATHRVLASGQPIELGPTEFRLLFFFMTHAERVYTRAQLLDEVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 E + +DV I +LR  L   +G    +ETV G GY  R
Sbjct: 185 GDHVFIEERTVDVHIRRLRAALE-NSGNHERVETVRGTGYRFR 226


>gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 232

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD A+   I   L   NFN+ V   G  G+E+     +D IILD+ L  + G 
Sbjct: 1   MEILLVEDDSAVVSLIRRGLSELNFNISVALNGLTGLEMAVSGNYDLIILDVMLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            V R +R  K + P+ ILS +   ED V G +S ADDY++KPFN EEL AR+    R+  
Sbjct: 61  RVCRNIRQQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIG 120

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             SR    + +   DL ++  +K  + Q   I LT  E++++E L   +   +++   L 
Sbjct: 121 QTSRVEENNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++         ++DV+I  LR K+ +    K  + TV G GYVLRE
Sbjct: 181 SVWGMDFNLSTNVVDVYINYLRNKI-DKGYNKKLLHTVVGMGYVLRE 226


>gi|260905731|ref|ZP_05914053.1| response regulator receiver [Brevibacterium linens BL2]
          Length = 242

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + +  + + +       G D +   +   FDAI+LD+ L D+ GF 
Sbjct: 14  RVLIVDDEANLAELLVMACQVKGWEAASVGTGRDAVARARNEHFDAIVLDVMLPDLDGFA 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  +R   I TPV  LS    ++D++ GL+ G DDY++KPFN +E++AR+ A +RRS  
Sbjct: 74  VIEKVRGEGIDTPVVFLSARDEVDDRLTGLRLGGDDYVTKPFNLDEVIARVEARLRRSAP 133

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + L+  GDL +++ +  V   GH I LT +E++++ L        L+K   L+ 
Sbjct: 134 VIPSGDEDLLRVGDLELDVRSHEVSRAGHPIDLTAREFEVLLLFMRNPRAVLSKAQILDR 193

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224
           ++D        I+++++  LRKK+        N   T  G GY+LR +
Sbjct: 194 VWDYDFGGNGNIVELYVSYLRKKIDAPFEDLPNLFHTKRGAGYILRAD 241


>gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 230

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 127/227 (55%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDDK LA  +EL LK   +       G  G+   +F+E D I+LD  L  + G E
Sbjct: 5   KVLVVEDDKRLARLLELELKHAGYESRCECDGTQGLRSVRFWEPDLILLDRMLPGMDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R+   S P+ +L+      DKV GL SGADDYI+KPF  EEL+AR+RA +R +  
Sbjct: 65  VCRNVRLFS-SVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALRGNDS 123

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+ + V  +L+++    TV      I LT +E+ ++E +   ++  LT+   L+H++ 
Sbjct: 124 PGQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQILDHVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              E E  I+DV+I  LR K+ + A     + TV G GYVL +   D
Sbjct: 184 ETYEGEANIVDVYIRYLRGKM-DDAFEPKLLHTVRGVGYVLDKKNTD 229


>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 242

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 4/232 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+ A+A  +  + +   + V     GE G+      ++  ++LDL L  + GF V
Sbjct: 10  ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLMLPGMDGFTV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R    S P+ ILS  +S +D + GL+ GADDYI KPF+   L+ARI A++RRSR  
Sbjct: 70  CDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSRQT 129

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +V G+L VN    T       +  T KE +++E L   ++  + +   L  ++ 
Sbjct: 130 MENEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKVWG 189

Query: 181 GR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
               +  + + +D+ I KLRKK+ +       + T  G GY +R   + E  
Sbjct: 190 YENAESVDTRTVDIHITKLRKKIEDDPAHPKLLVTFRGEGYQMRSAPECEKS 241


>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
          Length = 267

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +   I  ++    +       G + +       +D +++DL L  + G +
Sbjct: 43  RILIIEDDEDINRLICNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLPGLSGED 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +   +   P+ I+S     + K+  L++GADDYI+KPF+ EE+ ARI + +RR R 
Sbjct: 103 ILK-IVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 161

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L+   D+ ++ DAK V V G+ + LT +EY+++ LL    N   TK      
Sbjct: 162 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 221

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +   I+V +  +R KLS A   + YIETVWG GY L+
Sbjct: 222 VWNEPFYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKLK 266


>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 90/225 (40%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED  +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212]
 gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212]
          Length = 232

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + ++ +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232


>gi|29336923|sp|Q9CCJ2|MTRA_MYCLE RecName: Full=DNA-binding response regulator mtrA
          Length = 225

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 4   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 64  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G  I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 183 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221


>gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 226

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+LL+EDD  LA  I   L+ +   V        G  + +   +D +ILD+ L + P  
Sbjct: 1   MRVLLVEDDPRLAALIAEGLRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF++ R LR  +   P+  L+    ++ K+ GL +G DDY++KPF+  EL ARIRA+VRR
Sbjct: 61  GFDLARTLRNQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRR 120

Query: 119 SRGHAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           ++G A +LI       ++L A  V   G  + LT +EY ++E L L      ++   +  
Sbjct: 121 AKGEAANLIPLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G  E + K++DV++  LR+KL        ++ETV G GY L
Sbjct: 181 VWPGESEVDTKVVDVYVSSLRRKLGED-----FVETVRGLGYRL 219


>gi|168205907|ref|ZP_02631912.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170662604|gb|EDT15287.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
          Length = 232

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKDFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKEK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +  ++ G + +   ++ V +    I L  KE +++       N  L+++ 
Sbjct: 122 FLKESNKSTVKDEVIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNIALSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGDEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|149377083|ref|ZP_01894833.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
 gi|149358619|gb|EDM47091.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Marinobacter algicola
           DG893]
          Length = 245

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 66/235 (28%), Positives = 110/235 (46%), Gaps = 12/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L+S    V +   G + +E  +  + D ++LDL L    G  
Sbjct: 12  RILIVEDDERLAELTREYLESNGLTVALETHGGNAVERIRKEQPDLVVLDLMLPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R  R      P+ +L+  +   D+V GL+ GADDYI KP     L+ARIRA++RR   
Sbjct: 72  ICRRARPFYPG-PIIMLTARTDDLDQVLGLEMGADDYIGKPVQPRVLLARIRALLRRVTE 130

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     G     +   +L V+   +   +    I LT  E+ ++ LL+      L+
Sbjct: 131 NGSVAAEEGSGEEPVRLQFNNLVVDRSMREAWLSDDSIDLTSAEFDLLWLLASNAGRVLS 190

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + A
Sbjct: 191 REEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPIHPRRIKTVRSKGYLFVKEA 245


>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 223

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  ++  + L L+   F V   + G  G+   +    D I+LDLGL D+ G E
Sbjct: 6   HILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSGAE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    STP+ IL+    +  KV  L +GADDY++KPF+ EEL+ARIR  +R    
Sbjct: 66  IARRVRKTS-STPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLR--HQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +A S    GD+ ++++ + +      I L+ +E+ ++  L        T++    +++  
Sbjct: 123 NAGSAQTVGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              P   ++DV I  +R KL +A GG   I TV G GY ++
Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDA-GGYGLIRTVRGIGYAIK 222


>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
 gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
           regulator CreB [Klebsiella sp. 1_1_55]
          Length = 229

 Score =  251 bits (642), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+ED++++A ++   L+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+  ++  A ++   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL         I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226


>gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC]
 gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family
           [Alicycliphilus denitrificans K601]
          Length = 222

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/220 (33%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++  +L++E++ V     G+         ++D ++LDLGL    G 
Sbjct: 5   MRLLLVEDDTMIGEAVRDLLRAEHYAVDWATDGDMADAALATQQYDLVLLDLGLPRRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR+LR  K  TPV I +    +  +V GL +GADDY+ KP++  EL+ARIRA++RR+ 
Sbjct: 65  AVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRRAS 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     +++N   +   VQG  + L+ +E+ ++E L  R    L+++   + LY 
Sbjct: 125 GRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIEDKLYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             DE     ++V++  LRKKL     G + +  V G GY+
Sbjct: 185 WGDEVSSNAVEVYVHGLRKKL-----GAHIVLNVRGLGYM 219


>gi|291458739|ref|ZP_06598129.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291418656|gb|EFE92375.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 247

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 109/229 (47%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD+ L   I   +  E+        G  G+E  K  E+  +ILD+ +    GFE
Sbjct: 20  RILVIDDDRELCTLIRRTVSQEDIAADCCYSGRAGLEKLKENEYQLVILDVMMPGFDGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R      PV + +  +    KVRGL++GADDY++KPF  EEL+ARI +++RR   
Sbjct: 80  TLAQIRKESG-VPVLMFTAKNDSSSKVRGLRNGADDYLTKPFVMEELLARIVSLIRRYTR 138

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +    L ++LDA++V  +     L  KE+ ++   +  +   LTK     
Sbjct: 139 FNPNGSDAKTLSYDGLMIDLDARSVTTENGTFELLPKEFDVLLHCAKNQGRILTKRQIYE 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++          I   I +LRKKL        YI+TV G GY   +  
Sbjct: 199 EVWGEAYVYGDSNIMAVISRLRKKLEADPKNPKYIQTVKGVGYRFNKEV 247


>gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
 gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
           700633]
          Length = 232

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 2/224 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +       L    + V+V   G +G+EL K    D II D+ +  + G++ 
Sbjct: 5   ILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMDGYDF 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I RR  RG
Sbjct: 65  ISEVQYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFRRIYRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +  G+L +N +   V V  H ++LT K ++++ LL        +K      ++  
Sbjct: 125 GNPTQVQLGNLKLNHETYEVYVDNHLLNLTVKAFELLWLLCKNPERVFSKTELYEKVWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLREN 224
               +   ++V I  LR++LS  +      I+TVWG GY + + 
Sbjct: 185 EFIDDTNTLNVHIHALRQELSKHSSLHTPTIKTVWGLGYKIEKP 228


>gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 219

 Score =  251 bits (642), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 128/220 (58%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++  +L++E++ V     G    +  +  ++D ++LDLGL    G 
Sbjct: 1   MRLLLVEDDAMIGETVLHVLRAEHYAVDWVRDGSMADQALRSEQYDLVLLDLGLPQRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LR  + +TPV + +   +I D++ GL +GADDY+ KP++ +EL+ARIRA++RRS 
Sbjct: 61  EVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  + +     +S+N   +   V G  + L+ +E+ ++E L  R    L++      L+ 
Sbjct: 121 GRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEEKLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +DE     ++V+I  +RKKL N       I+TV G GY+
Sbjct: 181 WKDEVSSNAVEVYIHGVRKKLGN-----ELIQTVRGLGYL 215


>gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 231

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  ++  L    F+ +     ++          + ++LD  L D  G  
Sbjct: 7   QILLVEDEPGIAELLQFTLADAGFSSHNAMTVQEARLAIAEQLPEIVLLDWMLPDGSGLT 66

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR  R    +   PV +L+     EDKVRGL +GADDYI+KPF+  ELVARI +++RR+
Sbjct: 67  LLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHSLLRRN 126

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R  A     + G + ++ +   V V    + L   E+++++ L        ++   L+ +
Sbjct: 127 RADASRPGNIYGTIVIDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQLLDKV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E + +DV I +LRK L  AAG   YI+TV   GY++
Sbjct: 187 WGDEAFLEERTVDVHIMRLRKSLGVAAG---YIKTVRSIGYLM 226


>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
           53653]
          Length = 236

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 22/237 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 123

Query: 119 -----SRGHAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
                 RG  Q         ++  GDL V+ +   V   G ++ LT  E +++   S   
Sbjct: 124 ASGPGGRGGEQPGPEEPEGGVLRFGDLEVDPEGMEVRKGGEQVALTPTEMRLLLEFSAAP 183

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            T L+++  L  +++     + +++DV + +LR K+         IETV G GY LR
Sbjct: 184 GTVLSRDRLLERVWEYGWGGDTRVVDVHVQRLRGKIGQD-----RIETVRGFGYKLR 235


>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
 gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum
           centenum SW]
          Length = 219

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD+AL   +   L +  + V     GE+   L +   +DA++LDLGL    G 
Sbjct: 1   MRVLVAEDDEALRRQLRDALAASGYAVDEAPDGEEAAFLGETEPYDAVVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             LR  R   I TPV IL+   + ++KV G+ +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SALRGWRQQGIVTPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +  G + ++     V V G  + LT  E ++++ L   +   +++     H+Y 
Sbjct: 121 GHAAADLRCGPVLLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LR+KL         I T  G GY +
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKLGVD-----VIRTERGLGYRM 216


>gi|222111390|ref|YP_002553654.1| winged helix family two component heavy metal response
           transcriptional regulator [Acidovorax ebreus TPSY]
 gi|330825948|ref|YP_004389251.1| two component heavy metal response transcriptional regulator
           [Alicycliphilus denitrificans K601]
 gi|221730834|gb|ACM33654.1| two component heavy metal response transcriptional regulator,
           winged helix family [Acidovorax ebreus TPSY]
 gi|329311320|gb|AEB85735.1| two component heavy metal response transcriptional regulator,
           winged helix family [Alicycliphilus denitrificans K601]
          Length = 228

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  LA  +   L  E + V V   G DG+ L     +D I+LD  L  I G 
Sbjct: 1   MKLLIVEDEIKLAEYLRKGLSEEGYVVEVAHNGVDGLHLAMEGAYDLIVLDGMLPGIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR ++  TPV +L+    +ED+VRGL++GADDY+ KPF   ELVARI  +++RS 
Sbjct: 61  GVLAALRQSR-QTPVLMLTARMRVEDRVRGLKAGADDYLVKPFAFTELVARIEVLLKRSH 119

Query: 121 GHAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S     +   DL ++L  + VE  G R++LT KE+Q++ LL  R+   L++     
Sbjct: 120 PLPASHEALTLAIDDLHMDLVRRRVERAGKRLNLTAKEFQLLSLLLRRQGEVLSRAEIAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D   +    +IDV I +LR K+ +    +  + TV G GYVL   AK
Sbjct: 180 QVWDVNFDHGTNVIDVAIRRLRAKM-DTPFDRPLLHTVRGMGYVLEARAK 228


>gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 223

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 8/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVIEDDPDLNRQLVNALGEAGYAVDTAFDGEEGHFLGDSEPYDAVVLDIGLPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RR+ 
Sbjct: 61  SVLEHWRRAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++  +  V V G  + LT  EY+++  L       +++   + HLY+
Sbjct: 121 GHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVEHLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
              + +   I+VF+ +LRKK+         I+TV G GY+L   A  ET 
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIDCD-----VIQTVRGLGYLL---AAPETA 222


>gi|262280150|ref|ZP_06057935.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|299771423|ref|YP_003733449.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
 gi|262260501|gb|EEY79234.1| transcriptional regulatory protein rstA [Acinetobacter
           calcoaceticus RUH2202]
 gi|298701511|gb|ADI92076.1| Transcriptional regulatory protein rstA [Acinetobacter sp. DR1]
          Length = 238

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDLVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|118580643|ref|YP_901893.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118503353|gb|ABK99835.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 222

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 111/220 (50%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED++ L+  +   L    F  +    G D +   +    D I+LDL L    G E+
Sbjct: 5   VLIVEDEEKLSSLLHDYLSQSGFETHRLRNGLDVVPWVRERNPDLILLDLMLPGRDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+ + +      D++ GL+ GADDYI KPF+  E+VAR++A++RR+ G 
Sbjct: 65  CKEIRSFS-SVPIIMTTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTDGG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + I    L+++       +    + LT  E+++++ L+       +++  ++ +Y   
Sbjct: 124 --TTIKASGLTLDELRLRAVLNDRDLELTAVEFKLLQFLAANPGRIYSRQQLMDRIYPDE 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I KLR+K++ A   +  I +V+G GY   
Sbjct: 182 RIVSDRTIDSHIKKLRRKIAVATPDEELIHSVYGVGYKFE 221


>gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response
           regulator for mdtABCd and acrd [Ralstonia solanacearum
           PSI07]
 gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response
           regulator for mdtABCD and acrD [Ralstonia solanacearum
           PSI07]
          Length = 222

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 112/219 (51%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ +++    D G   ++  +    + ++LDL L    G E+
Sbjct: 5   ILIVEDEPKLAALMGDYLRAAHYDTEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 65  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 124 GAQPDSL--LQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 182 RIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRL 220


>gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
 gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum
           DSM 5476]
          Length = 222

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 113/218 (51%), Gaps = 4/218 (1%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDDK +   +   L+ E F VY        +   K   +D I+LDL L D  G++V RA+
Sbjct: 2   EDDKTIVMGLAYSLEQEGFEVYTAGNVSAALTALK-QNYDLILLDLTLPDGTGYDVCRAV 60

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQS 125
           +     TPV  L+      + V GL  GADDYI+KPF   EL++RI++++RR S+  +++
Sbjct: 61  KGRG-DTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSKEVSKT 119

Query: 126 LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD-GRDE 184
           + ++G + VN     V      I LT  EY+++  L       L++   L+ ++D G D 
Sbjct: 120 VFLSGSIRVNTAQARVTRGEQEIPLTSVEYRLLLTLIHNAGQVLSRAQLLDGIWDVGGDF 179

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + V+I +LR KL +     + I TV G GY++ 
Sbjct: 180 VNDNTLTVYIKRLRDKLEDDPAHPSIIRTVRGIGYLVE 217


>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
           [Sinorhizobium medicae WSM419]
          Length = 239

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I +++D + +   +   L  + + V V + GE    + +    D ++LD+ +    G  
Sbjct: 6   HIAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMPGEDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+ M+   D++ GL+ GADDYI+KPFN  EL+ARIRA++RR   
Sbjct: 66  VCRQLRTT-TELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124

Query: 122 HAQSL-------IVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       I      ++   +  V   G  + L+  E++++          L+++ 
Sbjct: 125 LPPQRSRIKAKTIRFDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLVLSRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+       E   + ID  + +LRKK+ +     + I+T WG GY      +
Sbjct: 185 LLDLTAGRAAESFDRSIDNQVSRLRKKIESDPKNPSLIKTHWGGGYSFVAEVE 237


>gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi
           Nb-255]
 gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family
           [Nitrobacter winogradskyi Nb-255]
          Length = 238

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+      ++D +++D  L    G 
Sbjct: 15  MRLLIIEDDRESADYLVKAFREVGHIAELARDGEEGLSFADGGDYDVLVIDRMLPKRDGL 74

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 75  SVIGCLREKGILTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRHG 134

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+  +   GDL ++  ++ V   G  + L  +E++++E L       +T+ M L +++
Sbjct: 135 GRAEETLYRVGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 194

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + T+ G GY++R
Sbjct: 195 DYHFDPQTNVIDVHISRLRSKIDKGFEQP-LLHTIRGAGYMVR 236


>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
           22836]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +A  ++  L+   + V +   GE G  L   + +D II D+ L  I GFE
Sbjct: 3   KILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHINGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+ + + +DK+ G  SGADDY+ KPF+  EL ARI  +++R  G
Sbjct: 63  LCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKNG 122

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +   D+ +NLD KTV      + LT KE+ +++ + L     L++      
Sbjct: 123 VSATVKTDHLEYADIKLNLDNKTVTRGDREMRLTPKEFNLLQYMMLNPERVLSRTEISEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D         IDV+I  LR K+ +       I T  G G++L+
Sbjct: 183 VWDTHFNTGTNFIDVYINYLRVKI-DKGFDSKLIHTRPGLGFILK 226


>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
          Length = 240

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 19/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 12  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR   
Sbjct: 72  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 130

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                         A   +  GDL V+ +   V   G RI LT  E +++   S    T 
Sbjct: 131 AGGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTV 190

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 191 LSRDRLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 239


>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [uncultured Desulfobacterium sp.]
          Length = 242

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D++ +   I   L S+ + V     GE+ ++L     FD I+LDL L  I G 
Sbjct: 15  IRILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGI 74

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +V + LR    +   P+ +L+  S   D + GL   ADDY++KPF+ + L ARI AI+RR
Sbjct: 75  DVAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILRR 133

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +I  GD+ ++   + VEV G  + L+  E+Q++ +LS R     ++  
Sbjct: 134 INDSSDDASDDKIIKRGDIVIHTGRRRVEVCGEPVELSFSEFQILIMLSKRPGWVFSRSQ 193

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++ ++        + +DV I  LRKKL        YIETV   GY  +E
Sbjct: 194 IVDTVHGEDYPVTDRSVDVQIVGLRKKLG---SCGRYIETVRSVGYRFKE 240


>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium siraeum
           70/3]
          Length = 244

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPG 59
           RIL+ ED+ A+   + + LK   ++V         ++    Y    D  +LD+ +  + G
Sbjct: 3   RILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            E+ R LR    +  + +LS  S   DK+R L  GADDY++KPF+  ELVAR+ A+ RR 
Sbjct: 63  SELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRV 122

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                         +++G  S+N  ++     G  I +T  EYQ++E       + L + 
Sbjct: 123 SLSIARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRR 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L H++      + KI+DV I +LR K+        YI T+WG GY  
Sbjct: 183 SILTHIWGNDYYGDDKIVDVNIRRLRMKIEEDPSNPRYITTIWGYGYKW 231


>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 223

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I   ++ +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKEIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|227545063|ref|ZP_03975112.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300909268|ref|ZP_07126729.1| response regulator [Lactobacillus reuteri SD2112]
 gi|77745287|gb|ABB02544.1| response regulator [Lactobacillus reuteri]
 gi|227184961|gb|EEI65032.1| response regulator [Lactobacillus reuteri CF48-3A]
 gi|300893133|gb|EFK86492.1| response regulator [Lactobacillus reuteri SD2112]
          Length = 239

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 16/241 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           M IL+IED+ ++   + +  K E ++      G +  E      +++D I+LDL L    
Sbjct: 1   MEILMIEDNHSVCEMMAMFFKKEKWHYEFAYDGVEAEEKFNADPHKWDIILLDLNLPKKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R    + P+ +L+   +  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQVAADIRRVSPTVPLIMLTARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRR 120

Query: 119 SRGHAQS-----------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKN 166
           +  +               I T +  +N   + V + G  +  LT KE+ +++ L+ +  
Sbjct: 121 THLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKPVGDLTPKEFDLLKTLASKPR 180

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              T+   L  ++D     + + +D  I KLR+KL N   G   I+TVWG GY   +   
Sbjct: 181 QVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENI--GPQVIKTVWGVGYKFDDEGN 238

Query: 227 D 227
           D
Sbjct: 239 D 239


>gi|153947537|ref|YP_001400292.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152959032|gb|ABS46493.1| transcriptional regulatory protein CpxR [Yersinia
           pseudotuberculosis IP 31758]
          Length = 227

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   ++  L  E F       G+ GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S+I  G L++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 120 EQPNLSATESSIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRIR 227


>gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
          Length = 228

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+ ++    +  L+   + V V   G   +     Y++D II D+ + ++ G++
Sbjct: 4   KILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMDGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  + +AK + P   ++   S  DK+  L  GADD+ISKPF+  ELV R++ I+ R  G
Sbjct: 64  FIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNRIYG 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +V GDL ++   + V++    ++LT K + ++ +L+   N   +K      ++
Sbjct: 124 KTNESQCLVIGDLVIDQSTRVVKIANQNLNLTNKAFDLLWILANHSNHVFSKTELYEQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 +   ++V I  LR  L+  +  +   I+TVWG GY L 
Sbjct: 184 GEEYLDDTNTLNVHIHSLRNDLAKYSTDQTPTIKTVWGLGYKLE 227


>gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 233

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 112/224 (50%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  +   L+SE F V      E+  ++     FD ++LD+ L    GF  
Sbjct: 4   ILIVDDDADLSAIVARYLESEGFAVERAASAEEAYDVLATRAFDLVLLDINLPGDDGFAA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             ALR A    P+   S  +S  D++ GL +G DDY+ KP++  EL+A + A++RRSRG 
Sbjct: 64  CAALRRAS-DVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRGR 122

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        +  G   ++  A ++   G  I L+ KE+ +   L  R+   ++K+  L  
Sbjct: 123 AGGEGADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLAE 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E E + + V +  LR K+ +      + +TV GRGY  
Sbjct: 183 VWGAFSEVEPQTVSVHMSWLRAKVEDDPAHPAHFKTVRGRGYCF 226


>gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218]
          Length = 219

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ A++ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
          Length = 232

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ + F V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLLD-NTVDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDCLRLNPGRQEASFDSETLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGHPWFKTLRGRGYLMV 229


>gi|329907969|ref|ZP_08274750.1| Two-component system response regulator OmpR [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546858|gb|EGF31781.1| Two-component system response regulator OmpR [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 253

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 8/213 (3%)

Query: 22  SENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGM 81
            + FNV   +  +   +L     +D ++LDL L    G  + R LR A   TP+ +L+  
Sbjct: 39  EQGFNVITAENSQTMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDMTPIIMLTAK 98

Query: 82  SSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--------SRGHAQSLIVTGDLS 133
               D++ GL+ GADDY+ KPFN  ELVARI A++RR        +          G+  
Sbjct: 99  GEDVDRIVGLEMGADDYLPKPFNPRELVARISAVLRRKAPDELPGAPSERPQSFEFGEFV 158

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++L  +T++  G  + LT  E+ ++++ +      L++E  +        E   + +DV 
Sbjct: 159 LDLGTRTLKKSGVSVALTTGEFSVLKVFARHARQPLSREKLMEMARGREYEVYDRSLDVQ 218

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           I +LRK +        YI+TVWG GYV     +
Sbjct: 219 ISRLRKLIEPDPSSPLYIQTVWGLGYVFIPEGQ 251


>gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 230

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  KLLSNIRKSKP-MPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCNDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 249

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 112/228 (49%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   +E+ L +E + V+    G DGI +    + D I+LD+ +  I GF++
Sbjct: 23  VLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEKIDLIVLDIMMPGIDGFQI 82

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R    + P+ ++S  S   DK++GL  GADDY+ KPFN  E +AR+++ +RR    
Sbjct: 83  CMKIRKD-YNIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRRYVYL 141

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  +    I   ++++N     V   G  + LT  EY ++ LLS       + E  
Sbjct: 142 NEKNDSNNDIDTIKVKEITINKKNHKVCKLGRELKLTPIEYDILLLLSNNLGNVFSAEQI 201

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++  +       + V + +LR+K+         I+TVWG GY + 
Sbjct: 202 FKEVWKEKYFEGNNTVMVHMWRLREKIEENPKEPTIIKTVWGVGYKIE 249


>gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36]
 gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36]
          Length = 223

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL + L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +    +  I+TV G GY +
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIQTVRGAGYRI 221


>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
           [Truepera radiovictrix DSM 17093]
 gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
           [Truepera radiovictrix DSM 17093]
          Length = 253

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 10/234 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++A+A  +   L+ E +   V   G  G+E  +    D +ILD+ L  + GF++
Sbjct: 19  ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGFDL 78

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R  R    +TPV  LS     ED+V GL++G DDY+ KPF+  E + R+  ++RR    
Sbjct: 79  CRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRRRGWG 138

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                S   + + +  G  +V+  + T  +  G    L+ +E ++++LLS R+   ++++
Sbjct: 139 GEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVSRD 198

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             L+ ++     P  + +D F+ +LR+          Y  TVWG GY      +
Sbjct: 199 DILDAVWGDDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGYRFTPEGE 252


>gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 234

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERDGFAVTAVPDGLLGLEAFRADRPDIALLDVMVPGLDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR    
Sbjct: 66  CRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                      R      +  GDL V+ D   V   G  + LT  E +++   S    T 
Sbjct: 125 GGAAGDGGPAGRQEQGGALTFGDLEVDTDGMEVRRAGEPVSLTPTEMRLLLEFSSAPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L+ ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 LSRDKLLDRVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 233


>gi|294815494|ref|ZP_06774137.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328093|gb|EFG09736.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 307

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 118/237 (49%), Gaps = 17/237 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK------FYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ +             F  I+LDLGL
Sbjct: 75  MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 134

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            D  G++V   LR    STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A
Sbjct: 135 PDQDGYQVCGKLRKI-TSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHA 193

Query: 115 IVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           + RR      +   A   +  G +++ L  + V V G  + LT KE+ ++ LL+ R    
Sbjct: 194 VSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGVV 253

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E  ++ ++    E   + ++V +  LR KL         +ETV G GY L   A
Sbjct: 254 FRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRM----PALVETVRGVGYRLVAPA 306


>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
 gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
          Length = 231

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +E  L    + V     G+  ++L      D +ILD+ +  I G E
Sbjct: 4   RILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R    + P+  L+  SS  DK  GL +G DDY++KPF++EEL AR+ A +RR   
Sbjct: 63  TCQHIRKTS-NVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   ++ ++ G+L V+ +   V  +  +I L+  EY++++LL  ++N   + +   
Sbjct: 122 YQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNIY 181

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++           + V I KLR K+ +      YI+T WGRGY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium
           atrosepticum SCRI1043]
          Length = 226

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F+      G++G+      ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFSTSRVLTGKEGVNGAISGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  +   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKTQ-QLPIIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S+  +GDL +N   +  E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 DQPSTKRDESVAASGDLVLNPATRISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL   AG    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALAGNMMTIETVRSVGYRIR 226


>gi|302380601|ref|ZP_07269066.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303233633|ref|ZP_07320287.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
 gi|302311544|gb|EFK93560.1| response regulator receiver domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302495067|gb|EFL54819.1| response regulator receiver domain protein [Finegoldia magna
           BVS033A4]
          Length = 239

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 121/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+K ++++ +  L+ E F V     G++ I++    ++  IILDL L  I G 
Sbjct: 9   IKILIVEDEKNISNAEKKYLEVEGFRVEQAFDGQEAIDMINSTDYSMIILDLMLPKISGE 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V+  +R ++  TPV +++     ++ + GL+ GADDYI+KPF+ + LV +++ I+RR  
Sbjct: 69  KVMEVIR-SRTETPVIMVTAKIDEDEILEGLKLGADDYITKPFSLKILVQKVKTILRRVE 127

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G +S++ D  T    G  I LT  E+Q+I+ L    N   T++  +
Sbjct: 128 KLGLPKSDKIYFDNGRVSISFDDNTFIKDGENISLTSNEFQIIKTLFSNPNKIFTRDEII 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    E   + ID  I  +R K+ +      YI+T++G GY L
Sbjct: 188 ELSFGYDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233


>gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803]
 gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803]
          Length = 216

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 120/221 (54%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RG 121
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 215


>gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1]
 gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family
           [Jannaschia sp. CCS1]
          Length = 239

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA  +   L    F+V   D GE  + L     F+A+ILDL L  I G EV
Sbjct: 5   ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNLPGIDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++    + P+ +L+      D++ GL+ GADDY+ KPF   EL+AR+RA++RR +  
Sbjct: 65  CRHVKAQS-ALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQTS 123

Query: 123 A---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G L ++  A    V G    LT  ++Q++ +L+      L+++  ++ L 
Sbjct: 124 PHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDALR 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + IDV + ++R ++ +       I TV G GYV 
Sbjct: 184 GEALEAFDRSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225


>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
           [Chromohalobacter salexigens DSM 3043]
 gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
           winged helix family [Chromohalobacter salexigens DSM
           3043]
          Length = 223

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 123/225 (54%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED+   A  +   L    + V V   G DG  L +  +F+ IILD+ L  + G+
Sbjct: 1   MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR +R      PV  L+   ++E +V+GL+ GADDY+ KPF+  EL+AR+R ++RR  
Sbjct: 61  ELLRLIRRHG-QVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +      DL +++  + V     R+ LT KE+ +++LL  R+   L++ +  + ++ 
Sbjct: 120 LRERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  +++V + +LR K+ +    +  I T  G GYVL +  
Sbjct: 180 MNFDSDTNVVEVAVRRLRAKV-DDPFTRRLIHTERGMGYVLEDRG 223


>gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas
           atlantica T6c]
 gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family
           [Pseudoalteromonas atlantica T6c]
          Length = 226

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 86/221 (38%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   ++ +L++  ++V + D G   + L   + +D  I+D+GL  + GF
Sbjct: 1   MRILIVEDDSRLLTQLDTLLQTHGYSVDLADDGAKALFLLSEHPYDLAIIDIGLPVMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  R   +S P+ IL+     ++KV GL +GADDY++KPF  EEL+AR++A++RRS 
Sbjct: 61  EVIQKARKNNVSCPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   I  G +S+N  ++ V V G  I LT  EY++ E L L     ++K     H+YD
Sbjct: 121 GQANPTIELGPISLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VF+ +LRKKL +  G  N IET+ GRGY +
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKL-DPQGSINPIETMRGRGYRI 220


>gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 214

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L VN DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|255100490|ref|ZP_05329467.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255306432|ref|ZP_05350603.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 241

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++  I+  L+ E F++ ++     G E+    E+  I+LD+ L D  G+E
Sbjct: 10  KLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSMILLDVTLPDGTGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR   
Sbjct: 70  LCQYIRGFS-QVPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKGN 128

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++     +  GDLS+      V      I LT  EY+++ +L   KNT L++   L  L
Sbjct: 129 TSEENKKILKFGDLSIYTLEARVYKNDKEIFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   D      + V+I +LR+K+ +      YIETV G GY  
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGIGYKW 232


>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
 gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
          Length = 226

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G E
Sbjct: 3   KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR +R      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRIRKVS-EVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ +  +
Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV++  LR K+ +    K  I TV G GYV+++ 
Sbjct: 182 CGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKDE 226


>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
 gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
          Length = 222

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +I+ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  VARRLRKTS-SVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 123 G--EVITIGALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +  G    I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GVIRTVRGIGYALK 220


>gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 256

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 14/243 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+ +         G +     + +  D I+LDL +    G  +
Sbjct: 7   ILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPGEDGLTL 66

Query: 63  LRALRVAK---ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            R LR +     +TP+ +L+      D++ GL+ GADDY++KPF   EL ARIRA++RR+
Sbjct: 67  CRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVLRRT 126

Query: 120 RGHAQSL----------IVTGDLSVN-LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           R    +L          +      ++ ++   V+ +G  + L+G EY+M+ +        
Sbjct: 127 RALPPNLDAAPPANARLLRFAHWRLDTINRHLVDAEGTVVALSGAEYRMLAVFLSHPQKV 186

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L+++  +        +   + ID+ + +LR++L + A     I+TV   GYVL      E
Sbjct: 187 LSRDQLMELTQGREADVFDRSIDLLVSRLRQRLGDNAREPAIIKTVRNEGYVLAAEVVAE 246

Query: 229 TCE 231
           T +
Sbjct: 247 TAD 249


>gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis
           NCTC 9343]
 gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis
           638R]
          Length = 229

 Score =  250 bits (641), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++     +  ++LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +    L +++  K V + G  + LT KE++++ LL   K    ++E  L
Sbjct: 124 ATSDTEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 SRIWSDEVYVLDRTIDVNITRLRKKIGTYG---KRIVTRLGYGYCFE 227


>gi|306835487|ref|ZP_07468504.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
 gi|304568653|gb|EFM44201.1| two component system response regulator [Corynebacterium accolens
           ATCC 49726]
          Length = 230

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 120/219 (54%), Gaps = 2/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD A++  + ++L+SE  N      G D +   + +E D I+LDL L  + G ++
Sbjct: 5   ILVVDDDPAISEMLTIVLESEGLNPVPVMDGNDAVPAFREHEPDLILLDLMLPGMNGVDI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+  +   D V GL+SGADDYI+KPF  +EL+ARIRA +RR+   
Sbjct: 65  CRTIRRES-AVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDSA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +   DL +++   TV    G  ++LT  E+ ++  ++       T+E  L  ++  
Sbjct: 124 EPETLEVADLIIDVPEHTVRRTDGTELNLTPLEFDLLLEMARHPGQVHTRESLLESVWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R+  + ++++V + +LR K+ +       + TV G GY 
Sbjct: 184 RNASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
 gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
           NaphS2]
          Length = 231

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D++ +   +   L  E + V     GE+ I++ K  + D ++LDL L  I GFE
Sbjct: 5   HVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGIDGFE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
           V R L+      + P+ +L+  +   D + GL+ GADDY++KPF+   L ARI+AI+RR 
Sbjct: 65  VARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILRRD 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +     S +   +L V+   + V V    + LT  E+ ++  L  R     T+   ++
Sbjct: 125 MLAFPEESSAVKIHNLVVHPGRREVLVDDKPVRLTFTEFGILNALVRRPGWVFTRTQLVD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +         + +DV I  LR+KL  A     Y+ETV G GY +++ 
Sbjct: 185 EVRGSEHLVTDRSVDVQIVGLRRKLGPAGA---YVETVRGVGYRIQDE 229


>gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator
           [Dickeya zeae Ech1591]
 gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family
           [Dickeya zeae Ech1591]
          Length = 232

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L H +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 7   MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  + S P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 67  DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 125

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A+       I  G+L ++   ++ E +G    LT  E+ ++ELL       +TK+   
Sbjct: 126 DKAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELS 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 186 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCSLTIETVRSVGYRIR 232


>gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
 gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   ++  L    F++     G  G E      +DA+ILDL L  I G 
Sbjct: 9   MRILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGR 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 69  DILREWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G ++++  A      G  + L  KE+ ++ELL   K   L +++    LY 
Sbjct: 129 GQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLYT 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      ++V +  LR+KL +      +I TV G GY L
Sbjct: 189 WDENVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 224


>gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 280

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 43  QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 102

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 103 ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 162

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 163 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 222

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 223 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 274


>gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 226

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD+ +A  I   L ++   V           +    EFD ++LDLGL D  G 
Sbjct: 1   MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   + TPV IL+   S+ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +  ++   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             DE E   ++V I  LR+KL N       +ETV G GY L      E+ 
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRLGPAEGGESS 225


>gi|255323823|ref|ZP_05364949.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
 gi|255299003|gb|EET78294.1| alkaline phosphatase synthesis transcriptional regulatory protein
           phoP [Corynebacterium tuberculostearicum SK141]
          Length = 230

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 124/220 (56%), Gaps = 2/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L+SE         G D +   + +E D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    S P+ +L+  +   D V GL+SGADDYI+KPF  +EL+ARIRA +RR+  
Sbjct: 64  ICRAIRRES-SVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++   DL +++   TV    G  ++LT  E+ ++  ++ R     T+E  L+ ++ 
Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLDSVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R+  + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 YRNASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222


>gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
 gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family
           [Sphaerobacter thermophilus DSM 20745]
          Length = 233

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 123/233 (52%), Gaps = 7/233 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           MR   +L+ +DD  +   +   L+++ ++V     G + +E+ +    D +ILDL +  +
Sbjct: 1   MRKDLVLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERERPDIVILDLMMPVM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFE ++ +R    + PV +L+  S   DK+RGL  GADDY++KPF+ +EL AR+ A++R
Sbjct: 61  DGFEAMQRIRQMS-NAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAVLR 119

Query: 118 RSRGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R++G A     ++    ++++L+ + V V G  + L+  E++++  L+      +     
Sbjct: 120 RAKGTAAPATQVLKYDRVTIDLNNRQVTVDGKEVRLSRTEWELLYQLASNAGRVMLHSEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++      E   +  ++ +LR KL +       I T  G GY L   +++
Sbjct: 180 LSRIWGPEFRDETYYLRTWVSRLRAKLEDDRENPRLITTFPGMGYRLESPSEE 232


>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
          Length = 223

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
 gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L   ++ +L  E F+V   + GE G+      E D I+LD+ +  + G E
Sbjct: 3   KILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINS-EIDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+  
Sbjct: 62  TLKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSS 120

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +S      I   ++ +    +        + LT  E+ ++          LTKE    
Sbjct: 121 TQKSSKNSDCIEYQEIKLYPGKQEAYCDNALMDLTTTEFALLTHFVQNPGQVLTKEALSL 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 181 DVLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLIEE 228


>gi|146339743|ref|YP_001204791.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|148254517|ref|YP_001239102.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146192549|emb|CAL76554.1| putative Two-component transcriptional regulator; putative
           transcriptional regulator involved in heavy-metal
           (Cu/Zn) homeostasis [Bradyrhizobium sp. ORS278]
 gi|146406690|gb|ABQ35196.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 234

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ + +  ++D +++D  L    G 
Sbjct: 9   MRLLIIEDDRESADYLVKAFREVGHVADLAGDGEEGLAMAESGDYDVLVVDRMLPKRDGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ ALR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 69  SLIGALRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 128

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A ++    GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 129 GPAEETTYKVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 189 DYHFDPQTNVIDVHISRLRSKIDKGFDRP-LLHTIRGAGYMIRD 231


>gi|119717163|ref|YP_924128.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119537824|gb|ABL82441.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 232

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNV---YVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           RIL+++D+  +   +   L++E F V            +        D ++LD+ +  + 
Sbjct: 3   RILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPGMD 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVLR LR     T V +++  S   DK+ GL  GADDY++KPF+  E+ AR+++++RR
Sbjct: 63  GLEVLRRLRTV-ADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR 121

Query: 119 SRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R         +   +L+V+   + + V G  + LT  E+ ++  L        ++   L
Sbjct: 122 RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      + +++DV I  LR +L + A   + I TV G GY  
Sbjct: 182 EQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227


>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
          Length = 223

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
 gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
          Length = 226

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 120/226 (53%), Gaps = 7/226 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++DD  L   +  +L  E F V V + GE+G++      FD ++LD+ +  + GF +L 
Sbjct: 1   MVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLT 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS----- 119
            LR     TPV +L+     +D+V GL++GADDY++KPF+  EL+AR+RAI+RR+     
Sbjct: 61  KLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSAPP 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            RG++   +   D+ +    +        + LT  E+ ++E L       ++K      +
Sbjct: 120 QRGNSSDEVHFMDIVLQPGLQQARCGEQLLELTATEFGLLECLLRNPGQIVSKSHLSEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + EP  + ID+ +  LRKKL +   G+   +TV GRGY+  E 
Sbjct: 180 LGKKLEPFDRAIDMHLSNLRKKLPDRTDGQPRFKTVRGRGYLWLEQ 225


>gi|310826554|ref|YP_003958911.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308738288|gb|ADO35948.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 228

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 130/225 (57%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ +LA ++  +L+     V V   G +G  L +   +D I+LD+ L  + G 
Sbjct: 1   MRVLLVEDEVSLATALGKILEKNKILVDVVHDGIEGKLLSENDVYDVIVLDIMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++L+++R    + PV +L+   S  DKV+GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  DILKSIRDRGKNVPVLLLTAKDSTADKVKGLDMGADDYLVKPFVTEELLARIRALGRRPW 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + I   DLS+N+++  + + G  I LT KE Q++E+       T++KE  L+ ++
Sbjct: 121 EVYQDNAITFSDLSLNINSGELLIGGAPIKLTSKEAQLLEMFIRNPGMTISKEQILDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                     +++++  LRKKL      +  I+T+ G GYVL+E 
Sbjct: 181 GIESMAMENSVEIYVHYLRKKLK---KSRTVIKTIRGLGYVLKEE 222


>gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 219

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   I+  L    FNV     G+ G        +DA++LDL L +I G 
Sbjct: 1   MRILLVEDDRLIGDGIKAGLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS 
Sbjct: 61  EILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+S +  G + ++  +    ++G  + L  KE+ ++ELL       L ++     LY+
Sbjct: 121 GQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
           protein [Verrucomicrobium spinosum DSM 4136]
          Length = 242

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 103/229 (44%), Gaps = 9/229 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +++D   +   +   L    F V       D  +  +  + D ++LD+ +    G  + R
Sbjct: 12  VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIMMPGEDGLALCR 71

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------ 118
            LR      P+  L+ M+   D++ GL+ GADDY+ KPFN  EL+ARIRA++RR      
Sbjct: 72  HLRAE-TQIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRRVGTLPE 130

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               H    +  GD ++++    V    G  I L+  E++++ +        L ++  L+
Sbjct: 131 IRSTHQAVQVKFGDKTLDVRRHEVTGPDGVAIPLSTAEFRLLCVFLDHPGKVLNRDALLD 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +   + ID  + +LR+K+   +     I+T WG GY     A
Sbjct: 191 LTSGREADVWDRSIDNQVSRLRRKIEPDSKNPTLIKTHWGDGYCFTGKA 239


>gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 239

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 8/214 (3%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           ++  L+   F+V   D G   +        DA+ILD+ +  + G  V+ ALR      P+
Sbjct: 24  LQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIPI 83

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LIV 128
           C+LS  SS+ D++ GL++GADDY++KPF   ELVAR++A++RR     +        +I 
Sbjct: 84  CVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFGVIH 143

Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188
              LSV++  + V V    + LT +E++++  L+      L++   L  ++      +  
Sbjct: 144 VDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADTN 203

Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 204 VVDVFVGYLRKKLE-LKGRHRLIHTVRGYGFVLR 236


>gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 231

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 115/226 (50%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+A+  ++E+ L+ EN+ V     G+  ++     +   I+LD+ + ++ G   
Sbjct: 6   VLVCDDDRAIVDALEVYLRQENYEVIKAYTGKQALKALAEQKIHLILLDVMMPEMDGLSA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R   ++ P+ ILS  S   DK+ GL  GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TVKIREE-LNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRRYTLL 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I  G L ++ +AK V + G  + LT  EY ++  L        + E    +
Sbjct: 125 GGAAEKSGVIKNGGLELDTEAKEVRLDGELVKLTATEYGIVLFLMNNIGRVFSIEQIYEN 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++         + V I ++R+K+        Y++ VWG GY + +
Sbjct: 185 VWNEPLYSSESTVAVHIRRIREKMEINPKDPKYLKVVWGIGYKIEK 230


>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 232

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGLPDMDGQQV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R    + PV +LS  +S   KV  L SGA+DY++KPF  +E +AR+RA++R++   
Sbjct: 70  LREFREWS-TVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAPAG 128

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 129 EAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 189 PTHTEDSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
 gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena
           variabilis ATCC 29413]
          Length = 684

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 2/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +   +   L S+++ V     GE+G    + Y +D I+LDL L  + G 
Sbjct: 1   MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGEEGWNFAELYTYDLILLDLILPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              R LR +   TPV +L+   +   KV GL +GADDY++KPF+ +EL+ARIRA++RR  
Sbjct: 61  SFCRQLRASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   +L ++     V   G  +HLT KEY ++EL     +   +    ++ L+ 
Sbjct: 121 SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE--NAKDE 228
             + P    +   I  LR+KL  A   ++ I+TV+G GY L+   + ++E
Sbjct: 181 FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQSGREE 230



 Score = 96.5 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+++++DD  +  +++ +L +    VY     +  +E     E + +IL + +    G E
Sbjct: 396 RVMIVDDDPQILTALQTLLSAWGIKVYTLAHSQGFLEAMALAEPELLILKMEMPSTSGIE 455

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + +  R        P+  L+       + +   +GADDYISKP  + EL+ RI   +  +
Sbjct: 456 LCQIARQEPQWAGLPILFLTNRHDTLTRQQIFIAGADDYISKPIVEPELIGRILNRLEHN 515

Query: 120 R 120
           R
Sbjct: 516 R 516


>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/228 (25%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V     G++ + L +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTSG-VPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   A    YI TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGN 228


>gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 225

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H++   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +++     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DSSVAFKPIETVRGMGYLFNE 222


>gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
 gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB
           [Agrobacterium vitis S4]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I ++ED++AL+  +   L+SE + V     G++     +    D +ILD  L  + G E
Sbjct: 4   KIAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWMLPGVSGIE 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR+   +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR++A++RR+
Sbjct: 64  LCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +     SL+  GD+ ++ +   V  +   + L   E++++E L        ++   L+ +
Sbjct: 124 KPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK L N +  ++ I TV G GY + 
Sbjct: 184 WGHDIYVDERTVDVHVGRLRKAL-NFSNMQDVIRTVRGAGYSME 226


>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
 gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 237

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+I+DD  +   I  +LK++ F+V+    G D ++     + D  +LD+ +  + G+E
Sbjct: 15  KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+ +L+  S +  KV+G + GADDY++KPF  +EL+ RI+A++RR + 
Sbjct: 75  FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   I  G+L+++    TV        +  KE++++ +L      TL++   +  ++  
Sbjct: 135 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E   + +DV I +LR++  +       I T+ G GY L 
Sbjct: 195 DFEGNERTLDVHINRLRERFPSHVYKFK-ITTIRGLGYRLE 234


>gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/225 (41%), Positives = 132/225 (58%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   L+     V     G  G EL     +DAI+LDL L    G 
Sbjct: 1   MRVLLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQ 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR AKISTP+ IL+     E  ++ L SGADDY+SKPF+  EL+AR++A++RR +
Sbjct: 61  EVLRGLRHAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   D+ V+   + V  +G+R+ L+  EY+++E L  R    ++K   L HLYD
Sbjct: 121 GTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E    +I+V I  LR+KL+   GG   IET+  RGY L E +
Sbjct: 181 FDWEHHSNVIEVHISNLRRKLNVTNGGP-VIETLRHRGYRLHEES 224


>gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 232

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++    + P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPAQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGRETEQIEFGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           ++      +   ++V I  LR++L+         I+TVWG GY + + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKMEKP 228


>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 223

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I+   + E  NV     G + IE CK  EFD I++D+ +  + GF 
Sbjct: 3   KILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKCKEQEFDVIVMDIMMPRLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120
             + ++      PV +LS      DK+ G + G DDY+ KPF+ +EL+AR+  IV RR R
Sbjct: 63  SYKEIKKIN-DIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQR 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    L ++LD + V V G ++ +T KEY ++  L+  +N  L+++  L+ ++ 
Sbjct: 122 IIENAVLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + +D  I  LR  + +    + +I TV G GY  
Sbjct: 182 YDFYGDDRTVDTHIKMLRNSIKDY---RKFIVTVRGTGYKF 219


>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
 gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
 gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
 gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
 gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
 gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
 gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
 gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
 gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
 gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
 gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
 gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
 gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
 gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
          Length = 219

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  + +++   L    + V     G +         +  +ILD+ L  + G 
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  K  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 63  ELLREFRA-KNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ ++ 
Sbjct: 122 ALAKE-IRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   +   I  LR KL         I+T+ G GY L E+
Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219


>gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           enterocolitica W22703]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE + V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           ++ LR    S P+ +LS  SS EDKV  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IQDLRQWS-SIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                LI   D+SVNL  + V   G  +HLT  E++++  L       +T+   LN ++ 
Sbjct: 127 SQESPLINFSDISVNLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGYRF 227


>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV--RRSR 120
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++  R++ 
Sbjct: 65  CRRIRKTSG-VPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKTT 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                +    +    + V+  ++TV V    I LT  E++++      +   LT+E  ++
Sbjct: 124 NKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|329938569|ref|ZP_08287994.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302542|gb|EGG46433.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 243

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  +   L+ E + V         +   + +  DA++LD+ L D  G  
Sbjct: 17  RVLVVDDEPDLAEVVTGALRYEGWEVRSAASASAALCEARAFRPDAVVLDIMLPDRDGLS 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR LR  +    V  L+   ++ED++ G+ +G DDY++KPF+  ELVAR+R ++RR+  
Sbjct: 77  VLRDLRSGQPHVCVLFLTARDTVEDRITGITAGGDDYVTKPFSLGELVARLRGLLRRAGM 136

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A SL+V GDL ++ DA  V   G  + L+  E+Q++  L       L+K   L+ 
Sbjct: 137 TRERAADSLLVVGDLELDEDAHEVTRGGDPVDLSPTEFQLLRCLMRHPRQVLSKTQLLDL 196

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      +  +++++I  LRKK+   +G    I TV G GYVLR 
Sbjct: 197 VWSYDFGGQAHVVELYISYLRKKI--DSGRDPMIHTVRGAGYVLRP 240


>gi|290958392|ref|YP_003489574.1| two-component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647918|emb|CBG71023.1| two-component system response regulator [Streptomyces scabiei
           87.22]
          Length = 235

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 20/235 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 -----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                             ++  G+L ++ +   V   G  + LT  E +++   S    T
Sbjct: 125 ASGGDTRAEEAGAASTGGVLTFGELVIDTEGMEVLKSGVPVALTPTEMRLLLEFSSAPGT 184

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLK 234


>gi|255318312|ref|ZP_05359547.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262379056|ref|ZP_06072212.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304624|gb|EET83806.1| transcriptional regulatory protein RstA [Acinetobacter
           radioresistens SK82]
 gi|262298513|gb|EEY86426.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 238

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIISEQPDMVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVPKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELNSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL++G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL  +     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 220

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 122/223 (54%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L+     V     G + +      E++ ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR  +  TPV +++   ++ D+V GL +GADDY+ KPF+  EL+AR RA++RR+ 
Sbjct: 61  ELLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DL V     TV   G R  LT +E  ++  L   + T L++     +LY 
Sbjct: 121 GRSTETIQYRDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLTHQGTPLSRARIEENLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   ++V I  LRKKL     G   I+T+ G GYV+ +
Sbjct: 181 WQEEVESNTVEVHISNLRKKL-----GPGIIKTIRGVGYVVEK 218


>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
 gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
           protein [Roseobacter sp. CCS2]
          Length = 220

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA  ++  L SE   V V   G +   L +   +D IILDLGL    G 
Sbjct: 1   MRILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     T + IL+  +   D+V GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  TVLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRKA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +    D++ +     V V G  ++LT +E  ++  L       +++    +H+Y 
Sbjct: 121 GKATPVFSKDDVTFDTRTNQVMVDGVPMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +   I VF+ +LRKKL +       IETV GRGYV++
Sbjct: 181 HDGDRDSNTIAVFVNRLRKKLGSD-----LIETVRGRGYVIK 217


>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 225

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRWVDT 223


>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++  L   +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
 gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
           JGS1987]
 gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
           F4969]
          Length = 226

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 130/227 (57%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED++ +A  IEL L  E + V   D G  G+E+ +  E D IILD+ L +I G 
Sbjct: 2   IKILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR +R      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++  
Sbjct: 62  EVLRRIRRVS-EVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRV 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    + +I  G L+++     V      I LT +E+ ++++L   KN  LT+++ +  
Sbjct: 121 FTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +       E  +IDV++  LR K+ +    K  I TV G GYV+++ 
Sbjct: 181 VCGYNYVGETNVIDVYVRYLRTKIDDVFKVK-IISTVRGVGYVIKDE 226


>gi|104782714|ref|YP_609212.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
 gi|95111701|emb|CAK16425.1| DNA-binding heavy metal response regulator [Pseudomonas entomophila
           L48]
          Length = 226

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED       +   L    F   +   G+ G  L    + D +ILD+ L    G+
Sbjct: 1   MKLLIVEDQAKTGQYLCQGLSEAGFATELATDGDTGQHLALTGDHDLLILDVMLPGRNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+++R A + TPV  L+   ++ED+V GL+ GADDY+ KPF   EL+AR+R+++RR  
Sbjct: 61  QILQSVRQAGLDTPVLFLTARDAVEDRVHGLELGADDYLVKPFAFSELLARVRSLLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLD-AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +Q   +           +  E  G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 NASQDTHLALADLRLDLIRRRAERSGQRIDLTAKEFALLELLLRRQGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   + +  +I+V I +LR K+ + +     I TV G GYVL E
Sbjct: 181 DMNFDSDTNVIEVAIRRLRLKI-DDSHPTKLIHTVRGMGYVLEE 223


>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
 gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Micrococcus luteus NCTC 2665]
          Length = 254

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +A  + +      + V V   G   +EL      D  ILD+ L D+ G +
Sbjct: 32  RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVMLPDMDGLD 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL  LR      P   L+   + ED+V GL +G DDY++KPF+ EE++ R   +V+RS  
Sbjct: 92  VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQRSGV 151

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++V GDL +N     V   G  I LT  +Y +++ L     T L+KE  L  ++
Sbjct: 152 VSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERILQDVW 211

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    I++++I  LRKK+   A     I T+ G GYV+R 
Sbjct: 212 GYDFGGRANIVELYISYLRKKI--DADRDPMIHTIRGAGYVIRP 253


>gi|171912348|ref|ZP_02927818.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Verrucomicrobium
           spinosum DSM 4136]
          Length = 231

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 118/221 (53%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L IED   L  ++   L      V      E+G +L +   +DA+ILD+ L    G 
Sbjct: 1   MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R  ++ TPV +L+ + S+ED+VRGL +GADDY+ KPF   EL AR+ A+VRR  
Sbjct: 61  ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S I  G L ++  A+TV   G+ + LT +E+ +++ L+       ++E     LY 
Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D P    +D  +  LR+KLS   G    I T  G GY+L
Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSP-PGVPQLIHTRRGLGYLL 220


>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
           MI-1]
 gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
           [Desulfotomaculum reducens MI-1]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +E+ L++E F V     G   I L K ++   +ILD+ +  + GF
Sbjct: 7   IRILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R L+    +  V +L+    ++D+V+GL  GADDY+ KPF+ EEL+ARI A +R   
Sbjct: 67  EVCRMLKKT-ENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V G   ++   K ++ +   + L+  EY++++ L L     L+K M L+ ++ 
Sbjct: 126 PNLFGKVVVGPFQIDDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                E  I++V+I  LR KL++       I T+   GY 
Sbjct: 186 YDFGGEENIVEVYIRSLRDKLND--KNHQIIRTLRRSGYR 223


>gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L +  +     D G   +   +  E   I+LDL L    G +V
Sbjct: 7   ILIVEDEPKLAALMRDYLIAAGYATQCLDNGLQVVPAVRASEPRLILLDLMLPGRDGLQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RRS   
Sbjct: 67  CQELRSFS-AVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRSPQL 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +      L ++ D     + G  + LT  E +++  L+       +++  L+ +Y   
Sbjct: 126 LVTAP--ARLLIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSRDQLLDRIYSDH 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A   +N IE+++G GY  +
Sbjct: 184 RVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGYRFQ 223


>gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 228

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           MR  IL+ +DD  +   +  +L+ E F       GE+   + +  +    I+D+ + +  
Sbjct: 1   MRTTILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  +   +R      PV +L+    ++DK RG +SG DDY+ KPF  +EL+ R+RA++RR
Sbjct: 61  GLMLCEEIRRD-YDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            R  +   +  G  +V+  +  V V G  + L  KE++++  L+ +     T+E  L  +
Sbjct: 120 YRIVSSEKLQLGGTTVDRHSYEVNVHGENVPLPLKEFELLAQLASQPGRIFTREQLLRPI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENAK 226
           +    E + + IDV I +LR++ +       + I TV G GY L   A+
Sbjct: 180 WGADYEGDDRTIDVHIKRLRERFAPFGLSAGFAITTVRGLGYKLEATAE 228


>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 229

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD   A  +   L+ E  +V V   G + ++       D ++LD+ +  + G EV
Sbjct: 5   VLVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVMMPGLDGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +RALR      PV +++  S+ EDK+ G   GADDY++KP++  EL+AR+R+++RR+   
Sbjct: 65  VRALRRES-DVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAGPS 123

Query: 123 AQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G L ++    TV V    I  T  E++++E L       L++   LN  +
Sbjct: 124 GSRPVLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLNQAH 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   +  D  +  LR+K+        Y+ TV+G GY +
Sbjct: 184 GQDTFVTERTADAHLKNLRRKIEADPRRPEYLHTVYGVGYKI 225


>gi|115523953|ref|YP_780864.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517900|gb|ABJ05884.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 225

 Score =  250 bits (641), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESADYLVKAFREVGHVADLAADGEEGLSLADSGDYDVLVIDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR     TP  ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 61  SVIGTLRDKGNRTPALILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHG 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   ++    GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 121 GPVEETSYKVGDLELDRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +P+  +IDV I +LR K+         + T+ G GY++R+  
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMVRDGG 225


>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
 gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
           PHSC20C1]
          Length = 242

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 1/220 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD A+   ++  L+ + + V +   G D +       F A  +D+ L ++ GFE
Sbjct: 20  KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S PV +L+   ++ED+V GL SGADDY++KPF   E  ARIRA+VRR   
Sbjct: 80  ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTA 139

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ +  G+L+++         G+ + ++ KE+ ++ +L+      LT+   L+ ++  
Sbjct: 140 AGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWGT 199

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +  ++D ++  LR+KL     G   I TV G GY L
Sbjct: 200 TAHIDANVVDQYVSYLRRKLEPTQSG-VTISTVRGVGYAL 238


>gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 225

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei
           VT8]
 gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family
           [Marinobacter aquaeolei VT8]
          Length = 223

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD ALA  +   L+     V V   G     L     +DA++LDLGL D  G 
Sbjct: 1   MKILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLPDGNGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L   R   I  PV IL+      DK  G  +GADDY++KPF   E++ R+RA+VRRS 
Sbjct: 61  QWLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  +I  GD++++  A  V   G  + LT +E++++  L       +++     H+YD
Sbjct: 121 GHAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G  EP+  +IDV + +LR+KL     G   IET+ G+GY +  + +
Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL-----GAQAIETIRGQGYRMNGHGE 221


>gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 234

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD  +   ++L L +  F V   D G D ++  +    D  +LDL +  + G+E
Sbjct: 4   KILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMNGYE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+ I S    I DK+  L  GADDY++KPF   E++ARI + +RR   
Sbjct: 64  LTKNIREIS-NIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCYE 122

Query: 122 HAQSL--------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                        +  G+L+++LD  T+E  G  I++T  EY+++  L        +K  
Sbjct: 123 LDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKAQ 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +     + +   + V I  LR+K+        YI+TV G GY + 
Sbjct: 183 LYESINGEYCDSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIE 231


>gi|123441540|ref|YP_001005526.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122088501|emb|CAL11294.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 227

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F   +   G++GI+      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVPSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227


>gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 229

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L    + V     GE+G  L     +DA++LD+GL  + G 
Sbjct: 1   MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL A R    + PV IL+      DKV+G  +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLEAWRRNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS +  G + ++     V V G+ + +T  EY+++  L       +++   + HLYD
Sbjct: 121 GHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ ++RKKL         I+TV G GY+L
Sbjct: 181 QDFDRDSNTIEVFVGRIRKKLDVD-----IIQTVRGLGYLL 216


>gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 223

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+K++   I    + E   V     G D I+  K  +FD I++D+ +  + GF 
Sbjct: 3   KILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKVKEEDFDVIVMDIMMPRLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + ++  K + PV +LS  S   DK+ G + G DDY++KPF+ +EL+AR+  IV R+  
Sbjct: 63  SYKEIKKIK-NIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++  +    L ++LD + V V    I LT KEY ++  +   KN  L+++  LN ++ 
Sbjct: 122 VEENKTMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                E + +D  I  LR  +      + +I TV G GY  
Sbjct: 182 YDFYGEDRTVDTHIKMLRNSIKEY---RKFIITVRGVGYKF 219


>gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM
           12333]
 gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family
           [Beutenbergia cavernae DSM 12333]
          Length = 232

 Score =  250 bits (641), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  L  ++ + L++  + V     G  G++       D I+LDLGL DI G E
Sbjct: 9   RILVVDDDAGLLRALGINLRAHGWEVTTAATGAAGLDAAGRAHPDVILLDLGLPDIGGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+  +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA VRRS  
Sbjct: 69  VIEGIRGWS-QVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSAL 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + ++  GDL ++L  + V   G  + L+  E+ ++E L   +   + +E  L  +
Sbjct: 128 VGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLREV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL + A    +I T  G GY   E
Sbjct: 188 WGPTATREGHYLRVYVAQLRRKLEDDAAAPRHILTSPGMGYRFEE 232


>gi|307244490|ref|ZP_07526599.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492183|gb|EFM64227.1| response regulator receiver domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 237

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/236 (25%), Positives = 117/236 (49%), Gaps = 17/236 (7%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+K +A  +E+ L ++ + V+  + G +G+++    +    I+D+ +  +
Sbjct: 1   MKSYNILVVDDEKEIADVVEIYLLNQGYKVFKANNGLEGLKIVDKEDIHLAIIDMMMPVM 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G  ++  LR    + PV ILS  S   D++ GL  GADDY++KPF   EL+AR+ + +R
Sbjct: 61  DGASMIMKLREKH-NFPVIILSAKSEEVDQIMGLNIGADDYVNKPFKPLELLARVNSQLR 119

Query: 118 RSRGHAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           R   +               L + G L +N + +TV V    + +T  E++++ LL    
Sbjct: 120 RYTKYMNISDDEDGEKEDEGLYIIGGLELNENKRTVSVDDKPVKITPIEFKILNLLMKNP 179

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E     +++         + V I  +R+K+   +    Y++ VWG GY +
Sbjct: 180 GRVFSSEEIYEKVWNEN-AINTDTVMVHIRNIREKIELDSKKPKYLKVVWGVGYKI 234


>gi|296136300|ref|YP_003643542.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295796422|gb|ADG31212.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +    L+     V     G   +   +  E++ ++LDLGL    G 
Sbjct: 1   MRILLVEDDHMLGAATREALRDATHAVDWVLDGASALSAAQGGEYELMLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR +  + P+ IL+   ++ED+VRGL  GADDY+ KPF   EL+ARIRA+ RR  
Sbjct: 61  SVLQALRQSGSNLPILILTARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++  G L ++  ++ V  QG    LT +EY ++  L LR    L++    + +Y 
Sbjct: 121 GQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
             +E E   ++  I  LRKKL       + I+ V G G
Sbjct: 181 WNEEVESNAVEFLIHSLRKKL-----APDVIKNVRGVG 213


>gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 239

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/235 (29%), Positives = 116/235 (49%), Gaps = 7/235 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           IL ++D+  +   +E+ L+ ENF ++     G+  ++  K   +D I+LD+ L D+ GFE
Sbjct: 6   ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLSGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R    + P+  +S  S+  DK+ GL  G DDYI+KPFN  E++ARI+AI+RR + 
Sbjct: 66  LCTEIR-KHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQKI 124

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   +    G LS + ++ T+ V+G  +  T KE +++       N   T      
Sbjct: 125 MENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLYE 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
            ++      E K + + I KLRKK+ +       I  + G GY      +   CE
Sbjct: 185 LVWGNDVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKFIPPNEALACE 239


>gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 220

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L 
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLE 217


>gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 223

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 125/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD+ LA  +   L+S  + V     G +       +EFD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDQVLADGLLRSLRSAGYAVDHVGSGSEADAALAAHEFDMLILDLGLPKLHGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR    S PV IL+   SIE +V+GL  GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  EVLKKLRGRGSSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G LS +   +   +    I L+ +E  ++E+L  R    ++K+  +  L +
Sbjct: 121 GSASAIIRHGPLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEQ---GPIRIATVRGLGYCLEK 220


>gi|332162529|ref|YP_004299106.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666759|gb|ADZ43403.1| putative two-component system response regulator [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330860750|emb|CBX71041.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
           W22703]
          Length = 227

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F   +   G++GI+      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGSMLREYLSGEGFTAELVLTGKEGIDGALSGNYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVSSGDDGVITHGDLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGSTLNIETVRSIGYRIR 227


>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +    +  V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 TQ--IQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        N+++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDNHLKTVYGVGYRW 220


>gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   + ++  +V      +   +      +D I+LDL L D  G 
Sbjct: 1   MRILLIEDDTVLGAAVRDQVAADGHSVDWVTRLDAAGDAMIGTAYDLILLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L++LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  GFLKSLRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G L ++L A+++   G  + LT +E+ + E    R    L+K      LY 
Sbjct: 121 GNPNPIVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E E   I+V + +LRKKL     G   IET  G GY L + 
Sbjct: 181 FDAEVESNTIEVHVSRLRKKL-----GPQVIETERGLGYRLGKP 219


>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 128/229 (55%), Gaps = 7/229 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+++D+K +   I + LK E + V   D  +   E  +  E D ++LD+ +  + G
Sbjct: 1   MKHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R+     P+  +S  S   D++ GL+ GADDY++KPF+  ELV RI+ I+RR+
Sbjct: 61  LDLCKKVRMTS-EVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRT 119

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +    +++   DL + ++ + V+V    + LT KEY++++ L   K   L+++  +
Sbjct: 120 NAVVQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKII 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++    +   + +D  I +LRKKL +       I+TVWG GY ++E+
Sbjct: 180 QNIWGYEYDGYDRNVDDTIKRLRKKLKDIESKVK-IQTVWGYGYKVQED 227


>gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
 gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +++     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DSSVAFKPIETVRGMGYLFNE 222


>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain [Bacillus
           anthracis str. A2012]
 gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL++DD  L   +   L +E   V     GE G+      ++D ++LD  +  + G +
Sbjct: 3   RVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSMMPKMNGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R    S P+ +L+      D++ GL+ GADDY+ KP    EL+ARI AI+RR+  
Sbjct: 63  VLKTVRTQS-SIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRRAQH 121

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              + +  + I   +++++   +   V    + LT  E+ ++E+L       ++KE    
Sbjct: 122 THDQNNISNSISVSNVTLHPSKRQATVGDAPLELTSTEFNLLEVLMRHAGQVVSKETLSI 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              D +     + IDV I  +R KL +     + I+TV G GY+  +N
Sbjct: 182 EALDRKLAKFDRSIDVHISSIRHKLGD----PSLIQTVRGLGYLFVKN 225


>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
 gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
           protein PhoP [Turicibacter sp. HGF1]
          Length = 233

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 119/234 (50%), Gaps = 13/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           RIL+++DD+A+A+ I   L+ E F + +   G + +E  +   E   +ILD+ +  + G 
Sbjct: 3   RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R  ++  P+  +S  S   D + GL+ GADDYI KPF  EELVAR++A +RR +
Sbjct: 63  ELCRRVR-DQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121

Query: 121 GHA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            H        Q ++      + L+   V      I L+ +E+Q+ +         L++E 
Sbjct: 122 RHQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             + ++      ++  + V I  LR+KL        YI+T+WG GY L +   +
Sbjct: 182 IFDAIWGENY-GDIGTVAVNIKNLRQKLDPDN---QYIKTIWGVGYKLVKPEGE 231


>gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD   A +++  L  + F   VT  GE G++  +  EFD ++LD  +  + G  
Sbjct: 3   KVLIVEDDVEAALTMQKGLSEQGFESVVTHDGEAGLKALREGEFDVVVLDRMMPGLDGVS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L   R   +  PV  LS +  +ED+V GL++GADDY+ KP+   ELVAR+ A++RR   
Sbjct: 63  MLEIARSEGMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDT 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  ++ +  GDL +NL ++ V+     I L  +E+Q++E L      ++T+ M L  ++ 
Sbjct: 123 GAVETTLRVGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWA 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P+  +IDV I +LR KL +    +  + TV G GY L+ 
Sbjct: 183 YHFDPQTNVIDVHISRLRAKL-DKGFDRAMLHTVRGEGYQLKP 224


>gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 235

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/236 (35%), Positives = 132/236 (55%), Gaps = 5/236 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK L   +   L    + V     GE+G  L     +DA++LDLGL    G 
Sbjct: 1   MRILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A+ S PV IL+      DKV G+ +GADDY++KPF+ EE++AR+RA++RRS 
Sbjct: 61  SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G + ++  +  V V+   + LT  EY+++  + L     +++   + HLYD
Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
              + +   I+VF+ +LRKKL     G + IET+ G GY +    +    +  ++A
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKL-----GFDIIETLRGLGYRVPAAGETLPAKSAKSA 231


>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 223

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|313902686|ref|ZP_07836084.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466983|gb|EFR62499.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 258

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 15/232 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-----YEFDAIILDLGLTDI 57
           +L+++D+  +   + L L+   F V     G   +              A++LDL L  +
Sbjct: 27  VLVVDDEAEIRRLLRLYLERAGFVVMEAGDGPSALAAFDAAGRQGRPVAAVVLDLMLPGM 86

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   LR      P+ +L+    I +++ G   GADDY+ KPF+  E+VAR+RA++R
Sbjct: 87  DGWEVCERLRERSP-VPILMLTARGEIHERLHGFHLGADDYVVKPFDPREIVARVRALLR 145

Query: 118 R--------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R            A+  +  G L ++  A+TV V G  + LT  E+ ++ +L+  +  TL
Sbjct: 146 RGMPAAGATRPPGAEPALELGRLVIDPGARTVTVDGQPVPLTRTEFDLLYILARHRGQTL 205

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  L+ L  G    + +++D  +  LR+KL    G ++ I TVWG GY  
Sbjct: 206 GRQQILDRLRGGDYFGDERVVDSHVRNLREKLEP-FGLRHLIATVWGVGYRF 256


>gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01]
 gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD  +   ++  L+ E   V     G + + +  +  + D ++LD GL D+ G 
Sbjct: 3   RILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGLPDLEGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR      PV +L+G +  + +V GL  GADDY+ KPF+ +EL+ARI+A++RRS 
Sbjct: 63  EVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRSG 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L ++L+A+   + G  + L+  E  ++ +L+       T+E  L  ++ 
Sbjct: 123 K--EGRRYFGPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   +++D +I  LRKKL +      +IETV G GY   
Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGYRFV 222


>gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK +   I   L  E F       G++ + + K    D IILD+ + D+ G +
Sbjct: 4   KILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPDMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R++R    + P+  LS      DK+ GL+ GADDY++KPF+ +EL +RIRA  R+   
Sbjct: 64  VCRSIR-KSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANFRKVDR 122

Query: 122 --------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                         +   L +N       +   +++L+ KE+Q++ +L    N  LT+E 
Sbjct: 123 LFKEWNELSPNREKIDSPLILNDKTFEAFLNNKKLNLSTKEFQILSMLMHNPNNVLTRER 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++   +  E+  + V I  +RKKL       ++I+T+WG GY  +E
Sbjct: 183 IYEYVWG-DEYGELNTVTVHIKNIRKKLGP---EYDFIKTIWGIGYKYKE 228


>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 111/225 (49%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++  L +E +N+     G++ + + + YE   IILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELDGWAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R  K + P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIR-KKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123

Query: 123 A-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           A        + +  + V+  ++TV + G  I LT  E++++      +   +++E  +N 
Sbjct: 124 AVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLINK 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +       + + I+  I  LR KL   A     I TV   GY   
Sbjct: 184 ILGYEFAGDDRTINSHIRNLRHKLGQKAAC---IVTVVRAGYKFE 225


>gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
 gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas
           syringae pv. tomato K40]
 gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae
           pv. tomato T1]
          Length = 227

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S    V   D G DG+      ++D I LD  L ++ G  
Sbjct: 3   RILAIEDDAITAKEIVTELSSHGLEVDWVDNGRDGLARAVSGDYDLITLDRMLPEMDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ISTP+ ++S +S ++++VRGL+ G DDY+ KPF  +E+ AR+  ++RRS  
Sbjct: 63  IVTHLRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSNP 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A++++   DL +NL ++     G  + L   E++++E L       +T+ M    ++
Sbjct: 123 VSAAKTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I+TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DQPGTAQLIQTVRGSGYVIAEPV 227


>gi|71736792|ref|YP_274243.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557345|gb|AAZ36556.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 4   ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 64  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 124 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++   A      IETV G GY L 
Sbjct: 184 YAGDDRTVDVHIKRLRERF--ATTHDFRIETVRGLGYRLE 221


>gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 241

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/232 (25%), Positives = 116/232 (50%), Gaps = 8/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L   N  V     G + +++      D ++LDL L    G  +
Sbjct: 8   ILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLDERRIDLVVLDLMLPGEDGLSL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R ++   P+ +L+ M    D++ GL+ GADDY+ KPFN  EL+ARI+A++RR++  
Sbjct: 68  CRRMRESRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRRTQAS 127

Query: 123 AQSLIVTG-------DLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +    G         +++L ++  +   G  + L+  E+ ++++        L+++  
Sbjct: 128 EDAPAKPGGTRLRFLGWTLDLSSRDLLSPDGVMVALSAGEFGLLQVFVEHPRRVLSRDQL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+        P  + ID+ + +LR+++ + A     I+TV G GY+     +
Sbjct: 188 LDFARGRSAVPFDRSIDIQVSRLRRRIGDDARDPQIIKTVRGGGYLFTPEVE 239


>gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii
           3937]
 gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii
           3937]
          Length = 226

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L H +   L +E F+      G++G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGHMLCEYLTAEGFSTSQVMTGKEGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  + S P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRNR-SIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A+       +  G+L++    ++ E +G    LT  E+ ++ELL       +TK+   
Sbjct: 120 DKAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLAALDGCNLTIETVRSVGYRIR 226


>gi|297537645|ref|YP_003673414.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297256992|gb|ADI28837.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 227

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  S    L+S+ + V     G+  I +     +DAIILD+GL  + GF
Sbjct: 1   MRILLVEDDTHLGESTARALRSQQWFVDWVRNGDSVINMIGLVSYDAIILDVGLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L +LR    S PV +L+   +I+D+V G Q GADDY+ KPF  +ELVARI+AI RR  
Sbjct: 61  EILHSLRSQNNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I+ G L ++L AK   +    + L  +E+ ++  +       ++KE  L  + D
Sbjct: 121 TRQHNEIIFGILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             + P    I+V+I +LR KL+ A      I T+ G GY++ E+ 
Sbjct: 181 WDEAPSSNAIEVYISRLRTKLTPAGIS---IRTIRGFGYLIEESV 222


>gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 231

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 115/231 (49%), Gaps = 16/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRTDRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R   +  PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDESM-VPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGR 124

Query: 119 -------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                      A  ++  G+L ++     V   G  + LT  E +++   S    T L++
Sbjct: 125 ANGGREEPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTVLSR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L  +++     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 DKLLERVWEYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 230


>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
 gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
          Length = 222

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   + +  D ++LDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  VARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 123 G--EVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +  G    I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GIIRTVRGIGYALK 220


>gi|239626588|ref|ZP_04669619.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516734|gb|EEQ56600.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 237

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I +IEDD+ + + +++ L+   +     +  E+G++  K  + D  I D  L  + G  
Sbjct: 12  KIYIIEDDENIRNLLKIALEGFGYGSEGFETAEEGLKRMKEEQPDMAIFDWMLPGMDGIT 71

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ +R        P+ +L+      DKV GL  GADDY+ KPF   EL ARIR+++RR+
Sbjct: 72  AIKQVRQTDGLKDIPIMLLTAKEKELDKVIGLDCGADDYMVKPFGVLELSARIRSLLRRT 131

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R      ++    +SVN   + V   GH   LT KE++++  L   ++  +T++  LN +
Sbjct: 132 RREESRDVLSYQGISVNRKTREVISSGHPCELTLKEFELLVYLLENQSRVVTRDELLNRI 191

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +    + E + +D+ I  LR+KL +  G    I+TV G GY 
Sbjct: 192 WGYEYDGETRTLDMHIRTLRQKLGDEGGS--CIKTVRGVGYR 231


>gi|159028966|emb|CAO87427.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 110/222 (49%), Gaps = 10/222 (4%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
           AH I+  L+ E+F  ++   G  G+EL    + D +ILDL L ++ G E+   +R    +
Sbjct: 13  AHLIQQTLERESFTCHLAYNGRVGLELFYQKQPDLVILDLMLPELDGLELCARIRQKPGT 72

Query: 73  TP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RGHAQSLI 127
               + +L+      D++ GL +GADDY+ KPF+  EL AR+RA++RRS       Q L 
Sbjct: 73  KDPYILMLTARGEEIDRIIGLSTGADDYMVKPFSPRELTARVRALLRRSLRHDSQPQQLH 132

Query: 128 VTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    ++LD  +   +        + LT  E+ ++       N   ++   +++L+   
Sbjct: 133 RSRHFIIDLDQHSALRKLEGMPEETLDLTTLEFNLLATFVSYPNRVWSRTQLIDNLWGND 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  I +LRKK+        +I+TV G GY   ++
Sbjct: 193 FFGDERVVDTHIRRLRKKVEPDPANPIFIKTVVGVGYKFEDD 234


>gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 242

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 124/234 (52%), Gaps = 8/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I++++DD  +   +   L    F+V   + GE   +L +    D IILD+ L    GF 
Sbjct: 7   HIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIMLPGDDGFT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LR +  + P+ +L+  +   D++ GL+ GADDYI+KPFN  EL+AR++AI+RR + 
Sbjct: 67  ICQRLRKSS-TVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRRVQP 125

Query: 122 HAQSL------IVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              +          G+L ++  ++  V+  G +  ++G +Y ++ L   + N  L+++  
Sbjct: 126 KQSAPSGQPKIYRFGNLVLDTTSRMLVQPNGDKSAISGADYTLLCLFLEKGNEVLSRDEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            + L+     P  + IDV + +LR++L + A     I+TV G GYVL    + E
Sbjct: 186 SDVLHGRECSPLDRSIDVHMSRLRQRLGDDAKNPTLIKTVRGSGYVLAVPVERE 239


>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 227

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A  ++  L+ +   V V   G  G +L   +++D +I D+ L  + G 
Sbjct: 1   MKILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPLLSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R+AK   PV +L+ + + +DKV G  +GADDY+ KPF+  EL+ RIRA++ R  
Sbjct: 61  ELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G       +    DL +N   K+V   G  I LT KE +++E +    +  LT+      
Sbjct: 121 GTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEIAEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++   +     IDV+I  LRKK+      K  I T  G G++ 
Sbjct: 181 VWNTHFDTGTNFIDVYINYLRKKIDKDFSDK-LIHTRPGLGFIF 223


>gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
           Thermotoga Maritima
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/227 (39%), Positives = 128/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  I   LK E F V V   GE+G        FD +ILD+ L    G+E
Sbjct: 4   RVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L++ R + ++TPV  L+ +S +E +V+GL  GADDY+ KPF+  EL+AR+RA++RR   
Sbjct: 64  ILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKSE 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V GDL ++   K        I LT KEYQ++E L   KN  +TKE    HL+  
Sbjct: 124 SKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWSF 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            DE    ++   I  LRKK  +    K  I TV G GYV    A+DE
Sbjct: 184 DDEVFSDVLRSHIKNLRKK-VDKGFKKKIIHTVRGIGYV----ARDE 225


>gi|120599950|ref|YP_964524.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
 gi|146292114|ref|YP_001182538.1| two component transcriptional regulator [Shewanella putrefaciens
           CN-32]
 gi|120560043|gb|ABM25970.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. W3-18-1]
 gi|145563804|gb|ABP74739.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens CN-32]
 gi|319425410|gb|ADV53484.1| two component transcriptional regulator, winged helix family
           [Shewanella putrefaciens 200]
          Length = 237

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSTEDQIKGLELGADDYVVKPVDPALLVARIHNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L+++     L
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDDKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL++       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 219

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D +ILDLGL  + G 
Sbjct: 1   MRLLLVEDNIALADELLPLFKGHGYAVDWRVDGRDALLAAHDDPYDLVILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQRWRAEGLTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D +++        LT  E++++    L     L++     HLY
Sbjct: 121 GAVNSPRLEVGGLALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG  E +  +++V I +LR+KL     G   IET  G+GY  +
Sbjct: 181 DGESERDSNVLEVHINRLRRKL-----GHQVIETRRGQGYRFQ 218


>gi|257467880|ref|ZP_05631976.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317062169|ref|ZP_07926654.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC
           49185]
 gi|313687845|gb|EFS24680.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC
           49185]
          Length = 226

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK +   I   L  E + V     G +G++L K  + D ++LDL L ++ G 
Sbjct: 1   MRILVVEDDKEIQELITYFLTKEGYEVDRASDGLEGLKLLKENKNDLVVLDLMLPNLDGK 60

Query: 61  EVLRALRVAKISTP---VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
              + +R          + +L+  + IED + GL+ GADDY+ KPF+  ELV RI+  ++
Sbjct: 61  NFTKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLK 120

Query: 118 RSRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +            D+ ++     V   G  + L+ KEY ++ LL   ++  +T+E  L+
Sbjct: 121 TTDREIKNEKYRFKDIEIDESRHMVTANGEEVELSKKEYDLLLLLIKNRDLVITRERILD 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++       + +DV+I KLR K+   +G    I+TV G GY L E
Sbjct: 181 KVWNSNYYTGDRTVDVYISKLRDKIPELSGC---IKTVKGVGYKLEE 224


>gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   LK E + V+    G++ I   K    D IILD+ +  + G E
Sbjct: 7   KILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R       T +  L+  S    ++ G   GADDYI+KP     L++RI AI+RR+
Sbjct: 67  ACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRN 126

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  + +   DL ++ D+        +I L  KE++++ LL+ + N   T+E  L
Sbjct: 127 TAEDEIHEGNRLEVSDLVIDRDSFLAYRGADKITLAKKEFELLYLLASKPNKVFTREQIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++       + IDV I KLR+K+        Y+ TV G GY   
Sbjct: 187 KSIWEDSVVVTNRTIDVHIRKLREKIGEN-----YVATVKGVGYKFE 228


>gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243]
 gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L S  F  +  +  +           + ++LD+ L    G ++
Sbjct: 2   IYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTPPELVLLDIMLPGTDGIQI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+  +     P+ +++   +  +KV+ L  GADDY++KPF   ELV+R+RA++RRS 
Sbjct: 62  LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRSS 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              Q      ++  G +S+NL    V V G  + LT KEYQ++E L  +     +++  L
Sbjct: 122 RSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++      E + +DV I  LRKKL  AA    Y++TV G GY 
Sbjct: 182 DSIWGYSFHGETRTVDVHIRTLRKKLGEAA---KYVKTVRGVGYK 223


>gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0012]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+IEDD ++A   +  L+  +  V +   G++G+E      FD IILD+ L  + 
Sbjct: 1   MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAALNEPFDLIILDVMLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R
Sbjct: 61  GFEICRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +          L+   +++V+  A  V V  + +  T KEY+++  L    N    KE 
Sbjct: 120 YQLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEE 179

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++     + EV  + V I ++R+KL  A    + IET+WG GY  
Sbjct: 180 LFESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRF 228


>gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
 gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family
           protein [Limnobacter sp. MED105]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/230 (35%), Positives = 124/230 (53%), Gaps = 3/230 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD  L+  +   L+   + V     G D         +D +ILDLGL  + G 
Sbjct: 1   MKILLAEDDSLLSEGLSQSLRQAGYAVDCMFKGSDADTALTTMNYDILILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S+E +V+GL +GADDY++KPF+ +EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   S+   G L+ +   +   +    + L+ +E  ++E+L  R    ++KE F++HL +
Sbjct: 121 GGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +E     I+V+I +LRKK+         I TV G GY L +  + E  
Sbjct: 181 WGEEVSNNAIEVYIHRLRKKIEVNG---VRIATVRGLGYCLEKFVEKEAT 227


>gi|255102513|ref|ZP_05331490.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
          Length = 237

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 8   KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+  R++A +RR +
Sbjct: 68  EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 126

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +       +I  GD++++++   V    + I LTG+EY ++  ++   N  + KE   
Sbjct: 127 YQSIVPSDSEVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAKNVNKIIGKERLY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 187 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 233


>gi|167773041|ref|ZP_02445094.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
 gi|167664974|gb|EDS09104.1| hypothetical protein ANACOL_04430 [Anaerotruncus colihominis DSM
           17241]
          Length = 235

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +  SI + L  EN  +Y    G   + +   +    I++D+ +  + G + 
Sbjct: 7   VLVVDDDREIVESIAIYLSRENLTIYKAYDGLQALNIVAAHTIHLILMDIMMPKMDGIKA 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  LR    + P+ ++S      DKV GL+ GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 67  MLKLRERN-NIPIILVSAKGEDADKVFGLEFGADDYITKPFNPLELIARVKSQLRRYVML 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                RG     IV G L++++  K +EV G  + LT  EY++ ELL          +  
Sbjct: 126 GTARDRGGPAETIVCGGLTLDVRQKRLEVDGEEVKLTPIEYKITELLMRHPGRVFPIDEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +++         + V I ++R+K+        Y++ VWG GY + +
Sbjct: 186 YERVWNEPSFAPENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 234


>gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N++V     GE GIE+     +D ++LDL L    G E
Sbjct: 3   KILIIEDDKNIQRLLGLELRHKNYSVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR + R    
Sbjct: 63  VCRELRKLG-DAPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVVTRNKEN 121

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 122 SNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMKNKGLSCSREKIIVGVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +   NYI T+ G GY+ +
Sbjct: 182 YDFDGEEKIVDVYINSLRKKIDPKS---NYIHTIRGFGYIFQ 220


>gi|33591407|ref|NP_879051.1| two-component response regulator [Bordetella pertussis Tohama I]
 gi|33571049|emb|CAE40537.1| two-component response regulator [Bordetella pertussis Tohama I]
 gi|332380808|gb|AEE65655.1| two-component response regulator [Bordetella pertussis CS]
          Length = 225

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 127/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IED+  LA  +   L  ++  V V   G +G  L    +++ +ILD+ L DI GF
Sbjct: 1   MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR A  +TPV +L+    +ED+VRGL+ GADDY+ KPF   EL+AR+ A+ RR R
Sbjct: 61  AVLAALRAAARNTPVLMLTARDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   DL ++L ++  +  G R+ LT KE+ ++ LL  R+   L++      ++D
Sbjct: 121 SQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLALLLRRQGQILSRTTLAEQVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + +  +IDV I +LR KL +       + TV G GYVL 
Sbjct: 181 MNFDSDTNVIDVAIRRLRGKL-DDPYDAKLLHTVRGMGYVLE 221


>gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 240

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 112/234 (47%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILL++D++ L   I L+L+ E +  +     G+   +L    ++D I+LD+ L D  GF
Sbjct: 5   RILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLDVMLPDGSGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R      P+  L+  ++  D + G   G DDY++KPF+  ELVARI+A++RR R
Sbjct: 65  DLCQEIRKTS-KVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       ++  GD  V   A  ++V+G  +  + +E+Q++       +       
Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
               ++      E K + + I +LRKK+        ++  V G GY      K+
Sbjct: 184 LYEKVWKQEAIGEEKTVVMHISRLRKKIEQNPKQPRFLINVRGLGYKFVPPRKE 237


>gi|330809736|ref|YP_004354198.1| two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377844|gb|AEA69194.1| Putative two-component system, response regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 134/229 (58%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  +  +   L    + V V   G DG+     +++D +ILD+ L    G+
Sbjct: 1   MRLLIVEDEEKTSSYVHRGLTELGYIVDVATNGIDGLHYALEWDYDVVILDVMLPGKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR+ K  TPV +LS   +++D++RGL+ GADDY+ KPF+  ELVAR++A++RR  
Sbjct: 61  DVLQGLRLQK-KTPVIMLSARGTVDDRIRGLREGADDYLGKPFSFAELVARVQALIRRRA 119

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G     + +   DL V+L A+ V   G R+ LT KE+ ++ LL+  +   L+K M    +
Sbjct: 120 GDTVDLTHLRIDDLEVDLQARKVTRGGLRLDLTAKEFSLLSLLARHQGEILSKLMIAEQV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   + +  +++V I ++R K+ +A   +  + TV G GYVL     D
Sbjct: 180 WDMNFDSDANVVEVAIKRVRAKV-DAPYPRKLLHTVRGMGYVLESREVD 227


>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 264

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 17/232 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR   
Sbjct: 98  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 156

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                       A   +  GDL V+ +   V   G RI LT  E +++   S    T L+
Sbjct: 157 AGGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLS 216

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 217 RDRLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 263


>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
           ATCC 14018]
 gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
 gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
          Length = 246

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 116/233 (49%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA +I   + +  +   V   G   ++     + D II+D+ L  + G E 
Sbjct: 14  ILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALTLKPDLIIMDVMLPVMDGIEA 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R + V++   PV +L+   +  DK+ GL +GADDY++KPF+  EL+AR  AI+RR    
Sbjct: 74  TRRI-VSRYPIPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRRVERA 132

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +R    +L   GDL ++   + V + G  IH T  E+ ++   +   +  L +E  
Sbjct: 133 TLIANRAQYNALFKFGDLIIDPRQRLVTLNGKEIHFTPTEFSLLTTFAKHPHDVLKRETL 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  ++D  D    + +D  +  LR K+     G ++I T+ G GY      +D
Sbjct: 193 LEEVWDWPDASGTRTVDSHVKSLRHKI-----GSSWIRTIHGIGYAFEPPDED 240


>gi|91775009|ref|YP_544765.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91708996|gb|ABE48924.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 244

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 7/234 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   ++  L  + F+V       +  ++      D ++LDL L    G  
Sbjct: 9   KILMVDDDLRMRELLQRYLGEQGFSVKAVSDAGEMDQVLAHEHVDLLVLDLMLPGEDGLA 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + PV +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 69  ICRRLRANGSTIPVIMLTARGDEIDRIIGLEMGADDYLPKPFNPRELLARINAVLRRHSR 128

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       I  G+   +   +T+   G  + +T  E+ ++++        L+++  
Sbjct: 129 LPPGTPVAEADHISFGEFIFDPSTRTLTKNGEPVTITSGEFALLKVFVDHPRQPLSRDRL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +        +   + IDV + +LR+ +        Y++T+WG GYV   + + +
Sbjct: 189 MQLARGRELDVFDRSIDVQVSRLRRLIEPDPSHPRYLQTMWGFGYVFVPDGETQ 242


>gi|148546454|ref|YP_001266556.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510512|gb|ABQ77372.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
          Length = 232

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++  F V V   G          + D +ILDL L    G  
Sbjct: 7   RILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRRVRSQ-YQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L ++   +   +    I LTG E+ ++ LL+      LT+E     L 
Sbjct: 126 VDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + + + ID+ I K+R K+ +       I+T+  +GY+    A 
Sbjct: 186 GVGYDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232


>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
          Length = 220

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  + +++   L    + V     G +         +  +ILD+ L  + G 
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  K  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 63  ELLREFRA-KNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ ++ 
Sbjct: 122 ALAKE-IRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   +   I  LR KL         I+T+ G GY L E+
Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219


>gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 220

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+   PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  ELLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218


>gi|297163405|gb|ADI13117.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 132/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  I+LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCSQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGTRVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  +  +++  +  LRKK+ +AA  +  ++TV G GY L ++
Sbjct: 181 -DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRLVDD 222


>gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
 gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D + +   ++++L  E + V     GE+ + L      D IILD+ +    G+ 
Sbjct: 4   RILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLAD-DTIDLIILDVMMPVKSGYV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
               +R  K   P+  L+  +   DK  G  +G DDY++KPF+  EL++R ++++RR   
Sbjct: 63  ACSEIR-KKTMAPILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLLRRYLV 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S     + +V GDL+V+ D +TV V+G  ++LT +EY ++ LL   +    + E  
Sbjct: 122 YQGKSFAAPDNRLVLGDLTVDQDTRTVTVEGRDVNLTSREYCILVLLLKNRRKIFSSENI 181

Query: 175 LNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +++          + V I  LR+K+        YI+T+WGRGY +
Sbjct: 182 YESVWNEPYFYSANNNVMVHIRNLRRKIEKDPQNPEYIKTMWGRGYYI 229


>gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 222

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  +   L++ ++     D G   ++  +    + ++LDL L    G E+
Sbjct: 5   ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDYI KPF+  ELVARI+ I+RR +  
Sbjct: 65  CREVRAFS-DLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRRVQRG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L ++  A +  ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 124 GAQPESL--LLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDDH 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  +  LR+K+   + G   I +V+G GY L
Sbjct: 182 RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRL 220


>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 13/231 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD  +   +   LK E F       G   +E+      D +ILD+ + ++ G EV
Sbjct: 7   IMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDILMPEMDGTEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+  LS      D++ GL+ G DDY++KPF+  EL+AR++A +RR    
Sbjct: 67  CKKIRA-HSDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRRRLTE 125

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A+           ++  G L +++DA+ V     R+ LT +E+++++ L        T+E
Sbjct: 126 AKPAVSLQEKLGAILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPEKIFTRE 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++  Y        + ID  I  +RKKL+   G    I T  G GY L E
Sbjct: 186 ELIDGAYGRDHFVSDRTIDSHIKSVRKKLAAVGGEA--IRTAHGVGYQLGE 234


>gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 240

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/231 (26%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L+     V     G++   L +  EFD ++LDL +    G  +
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDGLTL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K S P+ +L+ M    D++ GL+ GADDY++KPFN  EL+ARI+A++RR++  
Sbjct: 68  CRELRA-KSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQVE 126

Query: 123 AQS-------LIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q         +      ++++ +  V+ +G  + L+  E+ ++ +   R    L+++  
Sbjct: 127 PQPAAETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+           + ID  + +LR+KL         I+T+WG GY+   + 
Sbjct: 187 LDLARGREAVAFDRAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLFAADV 237


>gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
 gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family
           [Flavobacteria bacterium MS024-3C]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 12/229 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L +E + VY    G +G+   K  +   IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R      +T V  L+       +V G  +GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +       A+ +   GDL +N +   +  +G  + L  KE++++ LL+ + N    +E+
Sbjct: 126 FKEGAVTAEAEDITSVGDLIINREEYKIVHKGIEMVLPRKEFELLALLASKPNKVFKREV 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++        + IDV I KLR+K+ +        +TV G GY   
Sbjct: 186 ILDKVWGNEVVVGGRTIDVHIRKLREKIGDNNF-----KTVKGVGYKFV 229


>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
 gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
 gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
 gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
          Length = 234

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 116/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   +E++L  E + V +   GE+ + L      D IILD+ +    GF 
Sbjct: 8   KILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST-IDLIILDVVMPVKTGFV 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
               +R  K + P+  L+  +   DKV G  +G DDY+SKPF+  EL++R+++++RR   
Sbjct: 67  ACNEIRE-KTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    +++ T +L VNLD + V + G  + LT  EY ++ L+   +    + E  
Sbjct: 126 YQGKEKEREPNILKTKELCVNLDTQDVTLNGEPVFLTTIEYSILILMLKNRKKVFSSENL 185

Query: 175 LNHLYDGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++D +        I V I  LRKKL        YI+T WG+GY +
Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYI 233


>gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630]
 gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile
           QCD-63q42]
 gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC
           43255]
 gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
 gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile]
 gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DDK +  SIE+ LKSE F +Y    G   +E+    +   I++D+ +  + G + 
Sbjct: 4   ILVVDDDKEIVDSIEIYLKSEGFKIYKAYDGMKALEIITENDIHLILMDIMMPKLDGIKA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
              +R  + + P+ ++S  S   DK+ GL  GADDYI+KPFN  EL+AR+++ +RR    
Sbjct: 64  TVKIREER-NIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVTL 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++ +G L +N   K V++ G  I +T  EY++IELL   K    + +    
Sbjct: 123 GNYEDTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYE 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++         + V I ++R+K+        +++ VWG GY + +
Sbjct: 183 KVWNEESFNSENTVAVHIRRIREKIEINPKEPRFLKVVWGVGYKIEK 229


>gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
 gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           symbiosum WAL-14673]
          Length = 232

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L++  +       GE  +     +  D I+LDLGL D+ G ++
Sbjct: 6   ILVVEDDAAVKNLITTTLETHQYRFRTASTGETAVMEAVSHNPDVILLDLGLPDMDGIDI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R     TP+ +LS  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIRSWS-KTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLNDA 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     S+   G++ ++  A TV + G  +HLT  EY+++ LL+      LT      
Sbjct: 125 GDSAAAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTYITK 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    + +V  + VF+  LRKK+        YI+T  G GY +
Sbjct: 185 KIWGSAWDNDVASLRVFMATLRKKIEPDPSNPQYIQTHIGVGYRM 229


>gi|317491162|ref|ZP_07949598.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920709|gb|EFV42032.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K +   +   L++E + V+  D  + G+      + D IILDLGL D  G 
Sbjct: 6   INILIVEDEKEIRRFVRSALENEGWRVFDADTLQRGLIEAGTRKPDLIILDLGLPDGDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           + +R LR    S PV +LS  +   DKV  L +GADDY+SKPF   EL+AR+R  +RR  
Sbjct: 66  DFIRDLRQWS-SIPVIVLSARAEESDKVLALDAGADDYLSKPFGVAELLARVRVSLRRHA 124

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +     LI   D+ V+L  + V   G  +HLT  E++++  L       LT+   L+ +
Sbjct: 125 QQNQESPLIQFSDIEVDLINRRVTRAGEDLHLTPIEFRLLTELIANAGKVLTQRQLLSSV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +          + +++  LR+KL        ++ T  G GY  
Sbjct: 185 WGPNYVEHSHYLRIYMGHLRQKLEAEPARPKHLLTETGVGYRF 227


>gi|260362926|ref|ZP_05775795.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus K5030]
 gi|260880213|ref|ZP_05892568.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AN-5034]
 gi|260895330|ref|ZP_05903826.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus Peru-466]
 gi|260901155|ref|ZP_05909550.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AQ4037]
 gi|308085719|gb|EFO35414.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus Peru-466]
 gi|308091713|gb|EFO41408.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AN-5034]
 gi|308109368|gb|EFO46908.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus AQ4037]
 gi|308112160|gb|EFO49700.1| positive response regulator for pho regulon [Vibrio
           parahaemolyticus K5030]
          Length = 243

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +  +V        G    +   FD +ILD GL D  G ++
Sbjct: 12  ILLIEDDDDLAELVQMHLKFQGHHVSRESSVAAGRNTYQQQSFDLVILDRGLPDGDGLDI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 72  CHHLRQRQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 131

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 132 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 191

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  +   
Sbjct: 192 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGYKFQPRP 243


>gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414]
 gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIP 58
           MR+LL+ED+  L  +I+  L  + + V     G++     +  + E+   I D  L  I 
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLTQQKYLVDWVIDGDEAWGYLEDSWTEYTLAIFDWMLPKIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR  + S P+ +L+   S+EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GLELCKRLRKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       +  G+L+++     V  Q        I LT KE+Q++E      N  LT E 
Sbjct: 121 SPQFQPQKLTVGNLTLDYGNNVVSSQDAVGNVQEITLTYKEFQLLEYFMKHPNQILTTEQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N L++   EP   ++   +  LR+KL    G +N IET+ G GY  
Sbjct: 181 IRNQLWEVNAEPVSNVVAAQMRLLRRKL-VNGGCENMIETLHGLGYRF 227


>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
 gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
 gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
 gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
           94]
 gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ + ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia
           fergusonii B253]
          Length = 219

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD+ +   I+  L    F+V     G +G E      +DA+ILDL L  I G 
Sbjct: 1   MRILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V I  LR+KL     G  +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHIHHLRRKL-----GSGFIRTVHGIGYTLGE 218


>gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
 gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
          Length = 221

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +   LK   + +     G D +       +D ++LDLGL    G 
Sbjct: 1   MRLLLVEDNVALADELNRDLKRLGYALDWLADGRDALHQGLIEPYDLVLLDLGLPGTSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R   + TPV IL+      +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  DVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A Q  +    L ++   +  + +G  + LT  E+ ++  L L     L+K    +HLY
Sbjct: 121 GFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQLYDHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +G  E +  +I+V I  LR+KL     GK+ IET  G+GY L   A
Sbjct: 181 NGEAERDSNVIEVHINHLRRKL-----GKDIIETRRGQGYRLGGEA 221


>gi|118618059|ref|YP_906391.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium ulcerans Agy99]
 gi|118570169|gb|ABL04920.1| two component sensory transduction transcriptional regulatory
           protein MtrA [Mycobacterium ulcerans Agy99]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A      G +I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVDIDVPAHKATRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
 gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
           magneticus RS-1]
          Length = 231

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 9/231 (3%)

Query: 1   MR-----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT 55
           MR     IL+++D+  +   +   L++E + V    LG + + L   +E D I+LDLGL 
Sbjct: 1   MRTNKKTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLP 60

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           D+ G E+LRAL    +   V +LS  +   DKV  L  GA DY++KPF+  EL ARIR  
Sbjct: 61  DMDGEELLRAL-PMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVC 119

Query: 116 VRRSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +RR  G  +S     V G+L ++++A T  +    +HLT  E++++  L+      +T  
Sbjct: 120 LRRGGGDGESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHG 179

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             L  ++  + + +   + + I KLR+K+        Y+ T  G GY   +
Sbjct: 180 QLLKAVWGKQSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGYRFAD 230


>gi|209546223|ref|YP_002278113.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209539080|gb|ACI59013.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V          +       D I+LDLGL DI G +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVQEAANAAGARQSVADSLPDLIVLDLGLPDISGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+A R   +S P+ ILS  +     V  L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQAWRDEGLSIPIVILSSRTDEAGIVTALESGADDYVTKPFGVNELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  I L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGQDIKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V+I +LR+K+       +YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYIRQLRQKVEQIPDQPHYITTETGVGYRLREP 229


>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
 gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
           87.22]
          Length = 246

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/243 (28%), Positives = 115/243 (47%), Gaps = 22/243 (9%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+ H++E  L  E + V     G + +        D ++LD+ +  I G +V
Sbjct: 5   VLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMPGIDGLQV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR     TP+ +L+ +    D++ GL +GADDY+ KPF+ EE+ AR+RA++RR+   
Sbjct: 65  CRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGNA 124

Query: 122 --------------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELL 161
                                   L+    L +++ A+        + LT  E+ ++ELL
Sbjct: 125 DGFARPLPPPAGAATATGAPETGGLLTAAGLRMDVQARRAWRGTRELELTRTEFDLLELL 184

Query: 162 SLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  L      + ++     P  K + V++  LR+KL +  G    I TV G GY L
Sbjct: 185 VRNAGIVLDHATIYDRIWGYDFGPGSKNLAVYVGYLRRKL-DEPGAPALIHTVRGVGYAL 243

Query: 222 REN 224
           RE+
Sbjct: 244 RED 246


>gi|187933916|ref|YP_001884616.1| PhoP family transcriptional regulator [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722069|gb|ACD23290.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum B str. Eklund 17B]
          Length = 231

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 14/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQSINSEIPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKSEVKNKTNDIIEKGFIKIIIPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L 
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---VGNEDVIKTIYGVGYRLE 230


>gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824]
 gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I L+EDDKA+A ++ L+L+SE F V       D I      +FD  ++D+ L D  G
Sbjct: 1   MKHIFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V   ++  K   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S
Sbjct: 61  FTVCTEIKE-KQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G + S      L V+  +  V+ +G  I L+  EY+++ +      + +T+   L+ L+
Sbjct: 120 -GSSPSSFEICGLHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELW 178

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 179 DAAGEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221


>gi|15827334|ref|NP_301597.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221229812|ref|YP_002503228.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
 gi|13092883|emb|CAC30282.1| putative two-component response regulator [Mycobacterium leprae]
 gi|219932919|emb|CAR70867.1| putative two-component response regulator [Mycobacterium leprae
           Br4923]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD +LA  + ++L+ E F+  V   G   +   +    D ++LDL L  + G +
Sbjct: 7   RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+  +   D V GL+SGADDYI KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRVLRADSG-VPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+ +++ A  V   G  I LT  E+ ++  L+ +     T+++ L  ++  
Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224


>gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249]
 gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249]
          Length = 232

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++L+         I+TVWG GY + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPSIKTVWGLGYKME 226


>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
 gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
          Length = 232

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD+ + +++ ++L+++ + +     GE+G++      FD +I+D+ + +I G E
Sbjct: 3   KLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDST-FDLLIIDIMMPNISGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+  L+  S   DK+  L +G DDY+ KPF+  EL+ARI+A++RR   
Sbjct: 62  VCRRIREKSY-VPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S   A S I    L++      V   G ++ LT KEYQ++ LL      T + +
Sbjct: 121 YDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180

Query: 173 MFLNHLYDGRDEPEV-KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +++          I V I  LR KL    G  + I+TVWG+GY   E
Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232


>gi|207724862|ref|YP_002255259.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206590087|emb|CAQ37048.1| two component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 245

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  + F V V   G+      +      ++LDL +  + G  
Sbjct: 5   KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR      PV +L+      D++ GL+ GADDY+ KPF+  EL+ARI A++RR + 
Sbjct: 65  ALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRRQA 124

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A            G   +N   +T+    H + ++  E+ +++LL       LT+E  +
Sbjct: 125 VAPAAPEDRDSFGFGPFKLNFRMRTLFRGDHALSISDTEFALLKLLVTHAMQVLTREHIV 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +Y        + IDV I +LR+ L   A    YI+TV GRGY    + +D
Sbjct: 185 ELMYGPGSGVSDRGIDVQIWRLRRVLDEDAQRPRYIQTVRGRGYTFVPDERD 236


>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  +A  I   L+     V     G +         +D +ILDLGL  + G 
Sbjct: 1   MRILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGLPRMNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR  K + PV IL+    ++D+VRGL +GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G LS +   + V++ G  + L+ +E  ++E+  LR    ++K+  ++HL  
Sbjct: 121 GQPR-CIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +E     I+V++ +LRKKL ++      I TV G GY L 
Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG---VRIVTVRGLGYCLE 218


>gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 228

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLT 55
           M+  I + EDD+ + + I + L+S  +     +  E+ +E  K  + D     + D  L 
Sbjct: 1   MKHLIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLP 60

Query: 56  DIPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
            + G   +  L+ A  +   PV +L+   S  D V GL  GADDY++KPF   E  ARIR
Sbjct: 61  GMDGMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIR 120

Query: 114 AIVRRSRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +++R     Q    +  GD+S++L+ + V ++G  + LT KEY+++  L    +  +T+
Sbjct: 121 NLLKRFSDDKQEGKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++    + E + +D+ I  LR+KL  A      I+TV G GY +
Sbjct: 181 EELLDRIWGYDYDGETRTLDMHIKTLRQKLGEAGHS---IKTVRGVGYRI 227


>gi|293397258|ref|ZP_06641530.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
 gi|291420176|gb|EFE93433.1| KDP operon response regulator KdpE [Serratia odorifera DSM 4582]
          Length = 229

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLSF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           +R LR    + PV +LS  ++ EDKV  L +GADDY+SKPF   EL+AR+R  +RR  S 
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKVSALDAGADDYLSKPFGIGELLARVRVALRRHASS 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   +++V+L  + V   G  +HLT  E++++  L       LT+   LNH++ 
Sbjct: 127 QQENPLVTFSEITVDLINRRVLRSGEELHLTPIEFRLLTELLANAGKVLTQRQLLNHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL +      ++ T  G GY  
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLESDPARPRHLLTETGVGYRF 227


>gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
 gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech703]
          Length = 226

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L +E F+      G +G++     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGNMLCEYLTAEGFSTSQVMTGREGVDGAMSDQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  +   PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRDR-QIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++     S +  GDL +N   ++ E  G    LT  E+ ++ELL       +TK+   
Sbjct: 120 DRSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLALLDGCTLTIETVRSVGYRIR 226


>gi|312141823|ref|YP_004009159.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325672915|ref|ZP_08152609.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311891162|emb|CBH50481.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325556168|gb|EGD25836.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD  L  ++ L L      V     GE G+        D ++LD+ L  + GFEV
Sbjct: 7   VLLIEDDDNLRDALSLALHRYGHVVTAAASGEAGLAALADGAPDIVVLDVMLPGVDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV +L+      D V GL++GADDY+ KP     L ARI+A++RR+   
Sbjct: 67  CRRIRARSG-VPVIMLTARGEDVDVVSGLETGADDYVVKPVQPRILDARIKAVLRRTPTA 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                  V GDL ++ DA T+     R  LT  E+Q++  LS R    L++E  L  ++ 
Sbjct: 126 PTVDGREVHGDLVIDRDALTLTEGARRPELTRTEWQLLLALSERPGQVLSREQLLEKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++D  + +LR K+        Y++TV G GY     A
Sbjct: 186 FDHLGGSRLVDACVQRLRAKIEKEPSNPRYVQTVRGFGYRFGPVA 230


>gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 236

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/231 (34%), Positives = 119/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ A+ + I  +L S  + V     G++G+ L   +  D I+LDLGL DI G E+
Sbjct: 7   VLIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGLPDIDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV ++S      +KV  L  GADDYI KPF   EL+ARIR  +R S   
Sbjct: 67  LKNLRQWS-KTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125

Query: 123 A------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A      +  +  G L+++   +TV   G +IHLT  EY+++ LLS      LT +  + 
Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++      E   + V +  +R+K+    G   YI T  G GY + E   +
Sbjct: 186 EIWGV-YTEESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRMAEEVTE 235


>gi|293602289|ref|ZP_06684736.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292819318|gb|EFF78352.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ LA  +   L   ++ V +   G  G++L    ++D IILD+GL  + GF
Sbjct: 1   MKILVIEDEQKLAELLRRSLTDNSYIVDIAMDGVSGLQLAYETQYDLIILDIGLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R    + PV +L+  SS+ED+VRGL+ GADDY+ KPF   EL AR+ A+ RR+ 
Sbjct: 61  EVLQRIR-KNDNVPVMMLTSRSSLEDRVRGLEQGADDYLIKPFALSELQARVLALRRRAA 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G   ++     +   DL ++L  + V     RI LT KE+ ++  +  R+   L++ +  
Sbjct: 120 GSGDTMSGGNILRVADLELDLLRRRVARGNSRIDLTAKEFGLLTFMMRREGEVLSRLVLA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D        +++V + +LR K+ +       + TV G GY + 
Sbjct: 180 EQVWDMNFNSNTNVVEVAVRRLRAKV-DDPFDIKLLHTVRGMGYTIE 225


>gi|257486326|ref|ZP_05640367.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|320324926|gb|EFW80998.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320329081|gb|EFW85079.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|331010614|gb|EGH90670.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|255655475|ref|ZP_05400884.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296451467|ref|ZP_06893204.1| response regulator [Clostridium difficile NAP08]
 gi|296880184|ref|ZP_06904150.1| response regulator [Clostridium difficile NAP07]
 gi|296259734|gb|EFH06592.1| response regulator [Clostridium difficile NAP08]
 gi|296428773|gb|EFH14654.1| response regulator [Clostridium difficile NAP07]
          Length = 241

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD  ++  I+  L+ E F++ ++     G E+    E+  I+LD+ L D  G+E
Sbjct: 10  KLLIVEDDSTISFGIKYALEQEGFSIDISKDLSSGKEMISSNEYSLILLDVTLPDGTGYE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR   
Sbjct: 70  LCQYIRGFS-QIPIIFLTACDEEVNIVMGLDIGGDDYITKPFRIRELISRIKAVLRRKAN 128

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +    ++  GDLS+      V      + LT  EY+++ +L   KNT L++   L  L
Sbjct: 129 TVEESKKILKFGDLSIYTLEARVYKNDKEVFLTSVEYKLLLILIQNKNTVLSRTQILEKL 188

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   D      + V+I +LR+K+ +      YIETV G GY  
Sbjct: 189 WDVTYDFVNDNTLTVYIKRLREKIGDDLCEPIYIETVRGLGYKW 232


>gi|71066151|ref|YP_264878.1| two component heavy metal response transcriptional regulator
           [Psychrobacter arcticus 273-4]
 gi|71039136|gb|AAZ19444.1| two component heavy metal response transcriptional regulator,
           winged helix family [Psychrobacter arcticus 273-4]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED++ L   I+  L    F V     G DG       EF  +++D+ L D+ GF
Sbjct: 1   MKVLLVEDEQKLGEYIKKGLTETGFIVDHHMTGLDGYHALMTEEFSVVLMDVMLPDVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++  R A   TPV  L+    + D+++G++ G DDY++KPF   EL+ RI+ ++RR+ 
Sbjct: 61  ELVQRYRAAGKHTPVLFLTAKDDLSDRIKGIEIGGDDYLTKPFAFAELIVRIKNLLRRAN 120

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I   DL +++  +TV      I LT KE+ +++L   R+   L + +  + +
Sbjct: 121 QSDYKSTVIHIADLKMDIAKRTVYRGETPIKLTAKEFTLLQLFLERQGEVLPRTVIASQV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   + +  IIDV I +LR K+ +       I TV G GY L 
Sbjct: 181 WDINFDSDTNIIDVAIRRLRIKI-DDGFDIKLIHTVRGMGYRLE 223


>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
           [Bacillus cytotoxicus NVH 391-98]
          Length = 223

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILLI+D++ +   ++L L    +       G + +EL +  EFD I+LD+ + ++ G+
Sbjct: 2   IKILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELVQQKEFDIILLDVMMPNMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E  + +R    + P+ +L+  +   D ++GL  GADDYI+KPF+++ LVARI A++RR++
Sbjct: 62  ETCKQIRQLS-NVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVLRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++ 
Sbjct: 121 K--EGFVSFNGIEWDKMKHTVTVYNEKISLTPIEFALLGLFLQNVNRAYSRDDLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLREN 224
            + + E + +D  I  +R+KL       +NY+ET++  GY  + +
Sbjct: 179 YQTDIEYRTVDSHIRNIREKLRKKGFPVENYLETIYKVGYKWKSD 223


>gi|304322363|ref|YP_003856006.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
 gi|303301265|gb|ADM10864.1| two-component response regulator [Parvularcula bermudensis
           HTCC2503]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 125/225 (55%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  +AH +   L  E   +     G DG+E+    +FD ++LD  L  + G 
Sbjct: 1   MRVLIIEDDHKMAHYLGDGLTREGHQIQAISTGPDGLEMALAQDFDVVVLDRMLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR A    PV +L+ M  ++D+V GL +GADDY+ KPF   E  AR+ A+VRR  
Sbjct: 61  SLLKRLRAAGRKMPVLLLTAMGGLDDRVEGLDAGADDYLVKPFAFSEAYARLNALVRRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +   DL ++L A+TV   G  + L  KE+ ++E+L   KN  +TK M L  ++
Sbjct: 121 IAGNPTTLTAADLHMDLIARTVSRGGVSLDLGPKEFLLLEILLRNKNRVMTKTMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P+  +++  I +LR K+ +       +ETV G GYV+R +
Sbjct: 181 SFHFDPQTSLVETHISRLRAKI-DRPFASALVETVRGAGYVIRAS 224


>gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
 gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM
           15053]
          Length = 224

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L+S        + G + +E       + I+LD+ L    G E+
Sbjct: 2   IFCVEDDSNIRELVVYTLESTGMKARGFEDGREFLEALALETPELILLDIMLPGEDGMEL 61

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ L+        PV +++   +  DKV GL SGADDY++KPF   ELV+R++A++RR+ 
Sbjct: 62  LKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLRRTA 121

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  I  G++ +++    V   G  ++LT KEY++++ L    N  LT++  L  
Sbjct: 122 KDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    + E + +DV +  LR+KL         IETV G GY + E
Sbjct: 182 IWGYDFDGETRTVDVHVRTLRQKLGACGEK---IETVRGVGYKMCE 224


>gi|328477647|gb|EGF47686.1| two-component response regulator [Lactobacillus rhamnosus MTCC
           5462]
          Length = 194

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/195 (32%), Positives = 106/195 (54%), Gaps = 10/195 (5%)

Query: 23  ENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMS 82
           E ++V     GE+ ++  +    D I+LDL L  I G EV R +R     TP+ +L+   
Sbjct: 1   EGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGLEVARQIRKEH-DTPIIMLTAKD 59

Query: 83  SIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---------RGHAQSLIVTGDLS 133
           S  DKV GL+ GADDY++KPF+  ELVAR++A +RR+            A   +  GDL+
Sbjct: 60  SEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSSANAAGSEEDEANRELEVGDLT 119

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           ++ DA TV  +G  I LT +E++++  L+      +T+E  L  ++      +V+ +DV 
Sbjct: 120 IHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTREHLLQTVWGYDYFGDVRTVDVT 179

Query: 194 ICKLRKKLSNAAGGK 208
           + +LR+K+ +     
Sbjct: 180 VRRLREKIEDNPSHP 194


>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 232

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+DD  L   +E  +  + F       G +G+E  +      ++LD+ +  + GFE
Sbjct: 4   RIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLEEGSPVLVVLDVMMPGLDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV +L+      DKV GL+ GADDY++KPF+  E  AR+ ++VRR   
Sbjct: 64  VLRKIRETS-AVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLVRRYTI 122

Query: 122 HAQS------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S       +   +L ++ D + V V G  I L  KE+ ++  L+  K   LTK+   
Sbjct: 123 LNGSGEEILGRLSFKNLEIDPDRRLVTVCGRGIELQAKEFDILYYLAKNKGRALTKKQIY 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +   I   I K+R+ +   +    YI+T+ G GY      
Sbjct: 183 EEVWQEEYLYDDSNIMAHISKIRRLIEPDSKKPTYIQTIKGVGYRFNAEV 232


>gi|294649454|ref|ZP_06726879.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
 gi|292824659|gb|EFF83437.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
           19194]
          Length = 238

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVETDGNRAIRRIIREQPDLVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  VCREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 TVEDEVAQRIEFDDLVIDNGGRSVTLHGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 230

 Score =  250 bits (640), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 111/227 (48%), Gaps = 11/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   I   LK E + V+    G++ I   K    D IILD+ +  + G E
Sbjct: 7   KILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R +R       T +  L+  S    ++ G   GADDYI+KP     L++RI AI+RR+
Sbjct: 67  ACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRN 126

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 H  + +   DL ++ D+        +I L  KE++++ LL+ + N   T+E  L
Sbjct: 127 TAEDEIHEGNRLEVSDLVIDRDSFLAYRGTDKITLAKKEFELLYLLASKPNKVFTREQIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++       + IDV I KLR+K+        Y+ TV G GY   
Sbjct: 187 KSIWEDSVVVTNRTIDVHIRKLREKIGEN-----YVATVKGVGYKFE 228


>gi|302530944|ref|ZP_07283286.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439839|gb|EFL11655.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 250

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 129/227 (56%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E + V     G + + + + +  DA++LD+ L D  G E
Sbjct: 25  RVLVVDDESTLAELVSMALRMEGWEVRSAGTGAEAVRIGRDFRPDAVVLDVMLPDFDGLE 84

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+  R+RA++RR+  
Sbjct: 85  VLRRMRAETPYLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             G   S +V GDL+++ D++ V   G  + LT  E++++  L       L+K   L+ +
Sbjct: 145 VSGATGSQLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPRRVLSKAQILDRV 204

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      +  I++++I  LRKK+   A  +  I T+ G GYVL+  A
Sbjct: 205 WSYDFGGQANIVELYISYLRKKI--DADREPMIHTMRGAGYVLKPAA 249


>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
 gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
           [Thermotoga lettingae TMO]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED++ L +SI+  L  E ++V      E   ++     +D +++D+ L  I GFE
Sbjct: 7   KVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGINGFE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  LR + I+ P+ IL+ + +I DKVRGL  GADDY++KPF+  EL+ARI++++RRS  
Sbjct: 67  FVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNI 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I    L +N  ++ V V+   + ++ +E+ ++EL         ++E  +  +++ 
Sbjct: 127 TKGEEINFKGLKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWEN 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  +IDV+I  LR KL    G   YI+TV G GY   E 
Sbjct: 187 EKIIKSNVIDVYILYLRNKLKPY-GYDRYIQTVPGYGYRFCEE 228


>gi|117620485|ref|YP_855300.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561892|gb|ABK38840.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 114/226 (50%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E F       G+ G++      + A++LD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLSGEGFATTHVLTGKSGVQHALSGNYAAVVLDIMLPDLNGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  EVLRQIRRDS-RIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRVE 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +      +  G+L ++  ++    Q   + LT  E+ ++ELL       ++K+   
Sbjct: 120 PAPANPGKVQGLRLGELVLSPASRQCHWQAQPLELTATEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            H      EP  + +DV IC +R+KL   AG    IETV   GY L
Sbjct: 180 LHGLGRPREPYDRSVDVHICNIRQKLQALAGEAVGIETVRSIGYRL 225


>gi|300788744|ref|YP_003769035.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|15011029|gb|AAK77357.1|AF331073_1 response regulator AmrC [Amycolatopsis mediterranei U32]
 gi|7340666|emb|CAB83036.1| putative response regulator [Amycolatopsis mediterranei]
 gi|299798258|gb|ADJ48633.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 224

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ LA ++ L L++   +V     GE  +      EF  ++LD+ L  I GFE
Sbjct: 3   RLLLVEDDEPLAEALSLALRALGHDVVHAPTGEHALTALGDAEF--VLLDVMLPGIDGFE 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+      D V GL+ GADDY+ KP     L ARI+AI RR++ 
Sbjct: 61  VCRRIRARS-RLPIVLLTARGDPIDVVAGLECGADDYVVKPAEPRVLDARIKAIGRRAQP 119

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+L+++  A +V   G  + LT  E +++   +   N  L++++ L  ++
Sbjct: 120 AVPEAGVLRVGELAIDAAAMSVTRAGEELALTATEIRLLVEFAEHPNQVLSRQVLLKRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     + +I+D  + +LR K+ +       + TV G GY L 
Sbjct: 180 DYGYVGDSRIVDAAVARLRAKVEDDPANPVLLRTVRGLGYRLV 222


>gi|24375094|ref|NP_719137.1| transcriptional regulatory protein RstA, putative [Shewanella
           oneidensis MR-1]
 gi|113971341|ref|YP_735134.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114048578|ref|YP_739128.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|24349856|gb|AAN56581.1|AE015796_3 transcriptional regulatory protein RstA, putative [Shewanella
           oneidensis MR-1]
 gi|113886025|gb|ABI40077.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890020|gb|ABI44071.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
          Length = 237

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  I G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGIDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L+++     L
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL++       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 90/225 (40%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  L+ ++  +LK  N+ V     G  G E+ +   +D IILD  L +  G 
Sbjct: 1   MRLLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIYDLIILDRMLPEKNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R   I TPV +L+ M SIE++V GL +GADDY+ KPF+KEEL+ARIRA+ RR  
Sbjct: 61  DILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRRHT 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q   I    L+ N     +E  G++  LT KE Q++ELL+  KN  LTK+  L+ ++
Sbjct: 121 DFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQILDRVW 180

Query: 180 DGRDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + E    I+V+   LRKKL         IET+ G GY L+E
Sbjct: 181 GLDSDIEMNNNIEVYFSYLRKKLRELKCN-VVIETIRGIGYCLKE 224


>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus obeum
           A2-162]
          Length = 224

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+K +   +        + VY    G++ +        D I+LD+ + D+ GF V
Sbjct: 5   ILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN-PDIILLDINMPDMNGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             A+R   +S P+  L+      DK++G   GADDY+ KPF+ +EL AR+ A +RR + H
Sbjct: 64  CEAIR-NYVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLRREKRH 122

Query: 123 AQSLIVTGD--LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           + S IV  D  + ++  ++TV  +   I+ T KE+ +IE LS  K     +E     ++ 
Sbjct: 123 SSSAIVQFDKNIVIDYSSRTVFYKNAEINFTKKEFDIIEFLSQNKGIVFDRETIYEKVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                +  ++   I ++R K  + +    YIETVWG GY  ++
Sbjct: 183 LDGCGDNSVVTEHIRRIRTKFLSMSDNP-YIETVWGCGYKWKK 224


>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
 gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRWVDT 223


>gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
 gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
          Length = 219

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+K +   I      +   V     G + + L     +D ++LD+ +  I G+
Sbjct: 1   MKVLLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEALSLLDET-YDIVLLDIMMPGIDGY 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R  K   P+  +S +S  E+K++G + GADD+ISKPF    L A+  A+++R  
Sbjct: 60  EVCKLIRQ-KSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLN 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G + ++ D   V V    I L+ KEY ++      K   L+++  L+H++ 
Sbjct: 119 KGNES-LDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + +I+D ++ KLRKKL  A+    YI+TV   GY+   
Sbjct: 178 YDYYGDQRIVDTYVKKLRKKLLEASS---YIQTVVKIGYMFDP 217


>gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 122/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L + ++  L  E   V     G+ G+   +   + AIILD+ L    G 
Sbjct: 1   MRILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLLPVKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR    + P+ +L+   +I+D+VRGL SGADDY+ KPF   EL+AR+RA++RR+ 
Sbjct: 61  EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GDL++ L    V   G +I LT   + ++E L    N  L+ +M  NH++ 
Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    I+V+I +LR+K+ +       +ETV G GY LR
Sbjct: 181 YDTPGTPNAIEVYIRRLRRKI-DDPFEIKLVETVRGAGYRLR 221


>gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8]
 gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter
           xylosoxidans C54]
          Length = 223

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD  L H+++  L  + + V     G+  +       +D ++LDL L  + G 
Sbjct: 1   MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDRVLGALAGQPYDLMLLDLNLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+    IED+V GL +GADDY++KPF   EL AR+RA  RR  
Sbjct: 61  DVLRQLRQDGNQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ LI  G L  +   + V   G R+ L+ +E  ++E+L  R    +TK   +N L  
Sbjct: 121 GQAQPLIEVGPLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSLSA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     ++V++ +LRK+L         I+TV G GY+L
Sbjct: 181 WDADFSENAVEVYVYRLRKRLEGTGAS---IQTVRGFGYML 218


>gi|262369330|ref|ZP_06062658.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
 gi|262315398|gb|EEY96437.1| two-component system response regulatory system response regulator
           [Acinetobacter johnsonii SH046]
          Length = 238

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVEPDGNRAIRRIIAEQPDMVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  ICREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 APEDEVAQRIEFDDLVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SK82]
 gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 236

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD- 56
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  +   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGG 60

Query: 57  IPGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
           I G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  ISGVDLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     +  I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKTIDANGLLLDPVSQRVSFGDSILEMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L        +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEPYGAD-RFVQTVRGTGYRFSTRA 231


>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae
           F3031]
 gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3031]
          Length = 220

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L +  F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+ LQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRR-Y 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 120 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I TV G GY L
Sbjct: 180 WDEEISSGALDVHIYNLRQKL-----GKQFIRTVHGVGYAL 215


>gi|302386537|ref|YP_003822359.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
 gi|302197165|gb|ADL04736.1| two component transcriptional regulator, winged helix family
           [Clostridium saccharolyticum WM1]
          Length = 224

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+  LA ++  ++K +++   +   G DG+      E+D IILD+ L    GF
Sbjct: 1   MKVLIAEDEIRLADALGQIMKEQHYQADIVYNGTDGLYCGLSGEYDIIILDVMLPGENGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR A I TPV +L+    I DKV GL  GADDY++KPF  EEL+ARIRA+ RR  
Sbjct: 61  HVVQKLREAHIQTPVLMLTARDDIHDKVTGLDKGADDYMTKPFVPEELLARIRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD  +NL A  +      IHL  KE++++++L       ++KE+ ++ ++ 
Sbjct: 121 EVIVEEMKYGDFILNLSANDLCCGSKSIHLGYKEFEVLKILMNNSGKIISKEILISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + E   ++ +I  LRKKL    G K  I TV   GY L E
Sbjct: 181 SDSDAEDNNVEAYISFLRKKLK-FIGSKVEIGTVRKVGYRLEE 222


>gi|188588682|ref|YP_001919802.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
 gi|188498963|gb|ACD52099.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium botulinum E3 str. Alaska E43]
          Length = 231

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 14/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQSINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKNEIKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L 
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRLE 230


>gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V + +LR+KL     G   I+TV G GY+  E
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLE-GERGFKPIDTVRGLGYLFTE 222


>gi|260684887|ref|YP_003216172.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260688545|ref|YP_003219679.1| two-component system response regulator [Clostridium difficile
           R20291]
 gi|260211050|emb|CBA66398.1| two-component system response regulator [Clostridium difficile
           CD196]
 gi|260214562|emb|CBE07107.1| two-component system response regulator [Clostridium difficile
           R20291]
          Length = 278

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 49  KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGI 108

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+  R++A +RR +
Sbjct: 109 EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 167

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      ++I  GD++++++   V    + I LTG+EY ++  ++   N  + KE   
Sbjct: 168 YQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLY 227

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 228 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 274


>gi|254391878|ref|ZP_05007072.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294816204|ref|ZP_06774847.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326444537|ref|ZP_08219271.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197705559|gb|EDY51371.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294328803|gb|EFG10446.1| Two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 233

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L L     +V V   GE G+   + Y  D ++LDL L  + G E
Sbjct: 3   RVLLIEDDPAVQKGVSLALGRRGHDVEVAARGETGLLALERYRPDLVLLDLMLPQMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K   P+ ILS      D V GL++GADDYI+KP     + AR++A++RR   
Sbjct: 63  VCRRIRESK-QVPIIILSARGDEIDMVVGLEAGADDYITKPAGGAIIEARMKAVLRRVAP 121

Query: 122 HAQSLI--------VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              +            GDL+V+     V   G  + L   E +++  L+       +++ 
Sbjct: 122 AQDAQEAIPPAGAEHYGDLTVDRTTLVVTKHGAELALAPSELKLLLFLTAAPGQVYSRQQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  +++     +V+++D  + +LR K+ N      Y++TV G GY  
Sbjct: 182 LLEQVWEYVFYGDVRLVDACVMRLRAKIENHPRRPVYVQTVRGFGYRF 229


>gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD A+A SI   L+ +  N+  + L  D          D +ILD+GL D  G +
Sbjct: 5   RVLLVEDDPAIARSIVFALERDGINLTHSLLLSDARRQLLVRTPDVVILDIGLPDGSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + LR A  S PV ILS      D+V GL+ GADDY+SKPF+  EL+AR+R+++RR+R 
Sbjct: 65  LCKELRAAG-SMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRARM 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  +   G   ++   + + + G  ++LT +E+ ++  L   +    +++  L  ++ 
Sbjct: 124 PPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   + +D  I  LR KL  AA  ++YI T  G GY L 
Sbjct: 184 ADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLE 225


>gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1]
 gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides 2.4.1]
          Length = 221

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 2   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+ + PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 62  ELLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 122 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219


>gi|56750113|ref|YP_170814.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
 gi|56685072|dbj|BAD78294.1| two-component response regulator for energy transfer from
           phycobilisomes to photosystems [Synechococcus elongatus
           PCC 6301]
          Length = 218

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/207 (27%), Positives = 105/207 (50%), Gaps = 9/207 (4%)

Query: 24  NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSS 83
            + V     GE+ +   +    D ++LD+ +  + G+ V + LR      P+ +L+ +  
Sbjct: 3   GYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDGYGVCQELRKES-DVPIIMLTALGD 61

Query: 84  IEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS------LIVTGDLSVNLD 137
           + D++ GL+ GADDY+ KPF+ +EL AR+R+++RR      +      +I    + ++ +
Sbjct: 62  VADRITGLELGADDYVVKPFSPKELKARVRSVLRRVEKSGANGIPSSGVIQINSIRIDTN 121

Query: 138 AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE--PEVKIIDVFIC 195
            + V     RI LTG E+ ++ELL  R     ++   L  ++    E   + +++DV I 
Sbjct: 122 KRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWGYTPERHVDTRVVDVHIS 181

Query: 196 KLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +LR KL +  G    I T  G GY+ +
Sbjct: 182 RLRAKLEDDPGNPELILTARGTGYLFQ 208


>gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans
           TK24]
 gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces
           coelicolor A3(2)]
 gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 221

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  ++  L++  F       G+   E      FD ++LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A+++TPV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++ +G LS++L  +    +G  + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   +ETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GARQVETVRGMGYRL 218


>gi|313497538|gb|ADR58904.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 3/226 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA      L++  F V V   G          + D +ILDL L    G  +
Sbjct: 8   ILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLMLPGEDGLSI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R +    P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI+A++RRS   
Sbjct: 68  CRRVR-SHYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSETV 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G L ++   +   +    I LTG E+ ++ LL+      LT+E     L  
Sbjct: 127 DSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALRG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + + + ID+ I K+R K+ +       I+T+  +GY+    A 
Sbjct: 187 VGYDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232


>gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
 gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC
           25296]
          Length = 247

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 23  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 83  ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N D + V   G +I+LT  ++ ++  L       ++K   L+++
Sbjct: 143 VAAIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+    G +  I TV G GYVLR 
Sbjct: 203 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVLRP 245


>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
           [Bacteroides xylanisolvens XB1A]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK     V V   G  G ++ +   FD +ILD+ +  I G E
Sbjct: 4   KILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKINGLE 63

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      +PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 64  LCRLYRQTFGYQSPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 124 EVTSNLLTCDNLILDCNTRRAKRGNIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 184 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 223


>gi|254976943|ref|ZP_05273415.1| two-component system response regulator [Clostridium difficile
           QCD-66c26]
 gi|255094330|ref|ZP_05323808.1| two-component system response regulator [Clostridium difficile CIP
           107932]
 gi|255316083|ref|ZP_05357666.1| two-component system response regulator [Clostridium difficile
           QCD-76w55]
 gi|255518743|ref|ZP_05386419.1| two-component system response regulator [Clostridium difficile
           QCD-97b34]
 gi|255651862|ref|ZP_05398764.1| two-component system response regulator [Clostridium difficile
           QCD-37x79]
 gi|306521645|ref|ZP_07407992.1| two-component system response regulator [Clostridium difficile
           QCD-32g58]
          Length = 276

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 47  KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIDGI 106

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+  R++A +RR +
Sbjct: 107 EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 165

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +      ++I  GD++++++   V    + I LTG+EY ++  ++   N  + KE   
Sbjct: 166 YQSIVPSDSAVIKIGDITIDIEGNRVYKDRNEIELTGREYHLLSYMAQNVNKIIGKERLY 225

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 226 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 272


>gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 220

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR A+   PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 61  ELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +      ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 121 ALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 181 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 218


>gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 132/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++ ALR A    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   + +   DLS++L ++ V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNGFDTALKLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L
Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222


>gi|323698056|ref|ZP_08109968.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio sp. ND132]
 gi|323457988|gb|EGB13853.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio desulfuricans ND132]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL+I+DD+ L   +   L   +F       G   +E  +      I+LD+ +  
Sbjct: 1   MKSNGPILIIDDDQKLRDLVAEYLGEYDFPTATLPSGMKAVETIRSLNPSVIVLDVMMPG 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G EVLR +RV   +TPV +L+      D++ GL+ GADDY++KPFN  EL+ARI+A++
Sbjct: 61  KDGLEVLRDIRVE-FATPVIMLTAKGEDTDRIVGLELGADDYMAKPFNPRELLARIKAVL 119

Query: 117 RRSRGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           RR     +     + I  G L +NL  + +E+ G  + L   E+++++ L    +  L++
Sbjct: 120 RRVEACEERRAEITAIHAGGLVLNLARQVLEIDGGEVELAPTEFRLLKALMGHADRALSR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  ++  +D       + IDV + KLR  L         I TVWG GY+  
Sbjct: 180 DELMDMAWDKDFAAYDRSIDVHVSKLRSLLKPYPAHAKRIRTVWGTGYMFV 230


>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 123/226 (54%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +   +    + + + V     G+  ++L      D IILDL L  + G+E
Sbjct: 4   RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMDGWE 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R +R  +     PV +L+      D V GL++GADDY+ KPF+  EL+AR+RA +RRS
Sbjct: 64  VCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRRS 123

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +  I  G+L++      V V G  + L+  E++++E+L   +   ++KE  L  
Sbjct: 124 DSPQGGEVQISMGNLTLEPQG-DVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEILGK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + +DV + +LR+KL  A G +  I+TV GRGY + E
Sbjct: 183 IWG-HVGSDSRTVDVNVFRLRRKLEEA-GARVTIKTVRGRGYRVME 226


>gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
 gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
           13479]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 124/227 (54%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK L  ++ + L+   + V     G+D +     Y +D IILD  L  + G 
Sbjct: 1   MRILLVEDDKVLCSTVAMQLEQAGYQVDQCCRGDDALYYATEYPYDVIILDRMLPSLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+A+R   I TPV I + +  + D++ GL +GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  SLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRPG 120

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQG---HRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A +  +  G+LS++     +   G     + L+G+E  ++E L      TL +   L+
Sbjct: 121 RTADTASLAVGNLSLDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAILS 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++    E E   +D +I  LR++L +  G    I+TV G GY L E
Sbjct: 181 YVWGPDSEVEAGNLDNYIYFLRRRLKSLHGNAK-IQTVHGVGYRLEE 226


>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE  G  I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 226


>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ 
Sbjct: 4   RILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV----- 116
           V R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++     
Sbjct: 64  VCRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122

Query: 117 -RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            ++   +    +    + V+  ++TV V    I LT  E++++      +   LT+E  +
Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      + + ++  I  LR KL   A     I TV   GY    N
Sbjct: 183 SRIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KCITTVVRTGYKFEGN 228


>gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
          Length = 214

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 7/220 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++EDD+ +   I+  L ++ + V V   G +G++      FD I+LD+ + ++ GFEV +
Sbjct: 1   MVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNGFEVAK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA- 123
            +R    + P+ +L+ +   +D+++G   G DDYI+KPF+   L+ R+ A++RRS   + 
Sbjct: 61  MIRSQS-NIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            +  V  +L V+ DA  V V    + LT KE+++++LL   +   LT+E  +  ++    
Sbjct: 120 DNHFVFRELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWGYEY 179

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + ++ID  +  +RKKL        YI+TV G GY + E
Sbjct: 180 AGDTRMIDTHMKNIRKKLDI-----PYIKTVKGIGYKIDE 214


>gi|300774744|ref|ZP_07084607.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300506559|gb|EFK37694.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED+  LA S++  L+ EN+    +    + +E   F  +D I+LD+ L D  G 
Sbjct: 1   MKILIIEDNHELAQSMKYYLEGENYICECSHHYNEALEKLSFNSYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  ++  KIS+ + I+S  ++++DK+ GL+ GADDYI+KPF+  EL AR+RA+ RR +
Sbjct: 61  NILNYIKTEKISSGILIISAKNALDDKINGLERGADDYITKPFHLPELHARLRAVYRRKK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +   ++ +N D   V +   R+ +T KE++++    + KN  L+K+   NHL+ 
Sbjct: 121 MEGYSEVKFNEIILNTDTYEVIINETRLEVTQKEFELLLYFLVNKNRVLSKQSIANHLWG 180

Query: 181 GRDEPEVK--IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +       +   +  LRKK+  AA GK+YIET++G GY  
Sbjct: 181 DYTDNLSNFDFVYQHVKNLRKKIG-AAQGKDYIETIYGLGYKF 222


>gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
 gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter
           sphaeroides KD131]
          Length = 221

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA  +++ L+   F        ED         F+A++LDL L D  G 
Sbjct: 2   MRILIVEDDPVLADGLQVGLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPDGSGL 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR A+ + PV +L+    ++D+VRGL  GADDY+ KPF  EEL AR+RA+ RR  
Sbjct: 62  DLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPA 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A        ++++L A      G  + L+ +E+ ++  L       L+K      LY 
Sbjct: 122 ALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V + KLR KL     G  +IETV G GY L E
Sbjct: 182 WQEEIESNAIEVHVHKLRAKL-----GHGFIETVRGVGYRLAE 219


>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 229

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
 gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/230 (29%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDA---IILDLGLT 55
           M+  I + EDD+ + + I + L+S  +     +  E+ +E  K  + D     + D  L 
Sbjct: 1   MKHLIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLP 60

Query: 56  DIPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
            + G   +  L+ A  +   PV +L+   S  D V GL  GADDY++KPF   E  ARIR
Sbjct: 61  GMDGMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIR 120

Query: 114 AIVRR--SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +++R       +  +  GD+S++L+ + V ++G  + LT KEY+++  L    +  +T+
Sbjct: 121 NLLKRFSDDKQEEKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTR 180

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E  L+ ++    + E + +D+ I  LR+KL  A      I+TV G GY +
Sbjct: 181 EELLDRIWGYDYDGETRTLDMHIKTLRQKLGEAGHS---IKTVRGVGYRI 227


>gi|27375415|ref|NP_766944.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27348552|dbj|BAC45569.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 324

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 126/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD   A +I   L    F V     G DG++  +    DA+I+D  L  + G  
Sbjct: 101 RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMDGLA 160

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ ALR  ++ TPV +LS + +++D+VRGL+ G DDY++KPF   ELVARI A++RR   
Sbjct: 161 VIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRRPTD 220

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++++  G L ++L  +T       + L  +E++++E +  R +  LT+ M L  +++ 
Sbjct: 221 SRETILHVGPLEIDLIERTARRGERELELLPREFRLLEYMMRRNDQLLTRAMLLEEVWNY 280

Query: 182 RDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  P    +IDV + +LR K+ +  G    I  V G G+VLR
Sbjct: 281 KFVPATTNLIDVHMGRLRHKV-DGPGEVQLIHNVRGSGFVLR 321


>gi|126173246|ref|YP_001049395.1| two component transcriptional regulator [Shewanella baltica OS155]
 gi|152999605|ref|YP_001365286.1| two component transcriptional regulator [Shewanella baltica OS185]
 gi|160874224|ref|YP_001553540.1| two component transcriptional regulator [Shewanella baltica OS195]
 gi|217974443|ref|YP_002359194.1| winged helix family two component transcriptional regulator
           [Shewanella baltica OS223]
 gi|304410397|ref|ZP_07392015.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|307304489|ref|ZP_07584239.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|125996451|gb|ABN60526.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS155]
 gi|151364223|gb|ABS07223.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS185]
 gi|160859746|gb|ABX48280.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS195]
 gi|217499578|gb|ACK47771.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS223]
 gi|304350881|gb|EFM15281.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS183]
 gi|306911891|gb|EFN42315.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica BA175]
 gi|315266458|gb|ADT93311.1| two component transcriptional regulator, winged helix family
           [Shewanella baltica OS678]
          Length = 237

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++     + +    I LT  E++++ LL+ +    L+++     L
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLNETEIDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL++       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|297156215|gb|ADI05927.1| two component transcriptional regulator, winged helix family
           protein [Streptomyces bingchenggensis BCW-1]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 127/221 (57%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +++  L++  + V V   G  G+ + +   + AI+LD+ L  + G+
Sbjct: 1   MRLLVVEDEEGLAIALKRGLEAAGYAVDVAHDGLIGLHMARQNPYQAIVLDIMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   LR   I TP+ +L+  +   D+   L +GADD+++KPF+   L AR+RA++RR  
Sbjct: 61  RVCARLRAEDIETPILMLTAKNGEYDEAEALDTGADDFLAKPFSYVVLEARLRALLRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++++  GDL ++   ++      +  LT KE+ ++E L+ R    + K   ++ ++ 
Sbjct: 121 ARTRTVLRIGDLWIDPAGRSSGRGDVQFRLTAKEFAVLECLARRAGEVVPKIDIVDQVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E ++ I++V++  LR+K+ +   G+  IETV G GY +
Sbjct: 181 ADFEGDLNIVEVYVSALRRKI-DTPFGRASIETVRGIGYRM 220


>gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 116/229 (50%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L    + V   + G + +        DA++LD+ +  + G 
Sbjct: 1   MDILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVMMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+   ++ ++V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A+     +   DLS++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V+I  LR+K          I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRKTEADGEN-RLIHTVRGVGYVLRETPP 228


>gi|317054450|ref|YP_004118475.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
 gi|316952445|gb|ADU71919.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 234

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 87/235 (37%), Positives = 128/235 (54%), Gaps = 6/235 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED    A  I   L+  +F V V   G DG+ L   +E+D  ILD+ L  I G+
Sbjct: 1   MRLLLVEDQTTAADYIAKGLRENDFVVDVAANGVDGLHLLLTHEYDLAILDVMLPGINGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R A   TPV  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR R I+RR  
Sbjct: 61  KLLEMARQADRKTPVMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARTRVILRRQT 120

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +S +  GDL ++     V   G+RI LT KE+ ++ LL  R    L++ +  
Sbjct: 121 PGNVTVSDESQLQIGDLLLDFVKHKVTRAGNRIDLTQKEFLLLSLLMRRSGEVLSRTVIA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             ++D   +PE  +IDV I +LR K+ +    K  + T+ G GYVL E    +T 
Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKIDDNYEMK-LLHTIRGAGYVLEEKEHADTP 234


>gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
 gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus
           EC30]
 gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus
           EC10]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           +ILL+ED+++LA  I+  L  E ++      G++ + L   +   FD I+LD  L    G
Sbjct: 4   KILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R      P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR 
Sbjct: 64  ITVARRIRKES-DIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  A+        +V G+L +++    V+V G  I LT KE+ ++  L        T++ 
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            LN ++    + +  ++DV+I  LR KL +  G    I TV G GYVLR + ++
Sbjct: 183 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 235


>gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2]
 gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5]
 gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis
           HIP11704]
 gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1]
 gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6]
 gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis
           PC1.1]
 gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0860]
 gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0855]
 gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4248]
 gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2137]
 gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0017]
 gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0027]
 gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus
           faecalis TX1467]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + 
Sbjct: 1   MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R
Sbjct: 61  GFEICRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +          L+   +++V+  A  V V  + +  T KEY+++  L    N    KE 
Sbjct: 120 YQLLSNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEE 179

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++     + EV  + V I ++R+KL  A    + IET+WG GY  
Sbjct: 180 LFESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRF 228


>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  IARRLRKTS-SVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 123 G--EVISIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +  G    I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GIIRTVRGIGYALK 220


>gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +++     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DSSVAFKPIETVRGMGYLFNE 222


>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
 gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 57/230 (24%), Positives = 112/230 (48%), Gaps = 12/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  +   ++  L+   + V   + G++ I++ K +    I++D+ +  + G E
Sbjct: 8   KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67

Query: 62  VLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
             R LR       T +  L+       ++     GADDYI+KP     L++RI A+ RR 
Sbjct: 68  AGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRRE 127

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +   +  I  G+L+++ ++  V      I L  KE++M+  L+   N   +++  
Sbjct: 128 QKKHQKNEKKDKIQVGNLTIDRESYIVYNDKTPITLPKKEFEMLFFLAQNPNKVFSRDEL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L +++        + +DV I K+R+K+     G  YI+TV G GY L  +
Sbjct: 188 LQNIWGTDVYVLARTVDVHIRKVREKI-----GGGYIKTVKGVGYKLVTD 232


>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
 gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_22]
 gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
           SD CC 2a]
 gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE  G  I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 226


>gi|162451560|ref|YP_001613927.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
 gi|161162142|emb|CAN93447.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
          Length = 256

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +A  +   L  E   V+V +            ++D +++D  L D  G 
Sbjct: 34  MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    +TP   L+    + ++V GL  GADDY+ KPF+ EEL+ARI A+ RR+ 
Sbjct: 94  DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARIAAVSRRA- 152

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L A  VE  G  IHLT KE+ ++  L+      L++   L  ++D
Sbjct: 153 -GRSERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWD 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +P   ++DV I  LR K+         I TV G GYVL E  +
Sbjct: 212 VGHDPGTNVVDVAISALRAKVDRGFARP-LIHTVRGVGYVLEERPR 256


>gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 126/221 (57%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDDK L H +  +L      V+ TD  +  +     Y  D  I+DLGL D+ G 
Sbjct: 12  MKILLVEDDKLLNHHLSTLLTEAQNQVHSTDSAQVALHYAADYPIDVAIIDLGLPDMDGL 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR  +I  P+ +L+   + +DKV GL++GADDY+ KPF K+EL+AR+ A+VRRS 
Sbjct: 72  QLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSA 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GD  ++L  K + + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 132 GFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +   I+V + +LRKKL +  G    I T+  +GY+ 
Sbjct: 192 -DGEGDPNTIEVMVSRLRKKL-DPEGTIQPISTIRRQGYIF 230


>gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius
           str. 'morsitans']
 gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str.
           'morsitans']
          Length = 222

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDDK L   ++  L+ E+F             L     +  IILDLGL D  G 
Sbjct: 1   MKILVIEDDKLLREGLQQALEQESFACECASNLGQSWPLLTSTTYSLIILDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR      PV IL+   +I+++VRGL  GADDY+ KPF   EL+AR RAI+RR +
Sbjct: 61  TLLEKLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRHQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   D+S++L    V V G  + LT KE+ ++  L LR    + +E+    LY 
Sbjct: 121 GVSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+P    ++V I  LR+K+     G+  I+T+ G GY+L
Sbjct: 181 WDDDPSSNSLEVHIHHLRQKI-----GRGRIQTLRGFGYLL 216


>gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL + +     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DGSVAFKPIETVRGMGYLFNE 222


>gi|313902445|ref|ZP_07835847.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467243|gb|EFR62755.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter subterraneus DSM 13965]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 114/228 (50%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D+  +     L L+ E F V             +      ++LDL L D  G +
Sbjct: 5   HILVVDDEPGIREVCRLYLEREGFAVREAASLAGARAALRGEAPALVVLDLMLPDGSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L  A   TPV  L+  +   D+V GL+ GADDY++KPF+  ELVAR+RA++RR+R 
Sbjct: 65  LCRELVEAG--TPVVCLTARADETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARA 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     +  G  +V+L A+ + V G  +  T KE+ ++ L     +   T++  L  +
Sbjct: 123 AKEPAPVTVRFGRCAVDLAARRLWVGGREVACTPKEFDLLALFVTHPHRVFTRQQLLERV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     + + +DV + +LR+K+        Y++TVW  GY      +
Sbjct: 183 WDFSYAGDTRTVDVHVQRLRRKIEPDPQHPRYLKTVWSVGYRFDPEGE 230


>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A S+   L++E F V V   G  G+        D ++LD+ L    G E
Sbjct: 4   RVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +  A+ + PV +L+      D + GL  GADDY++KPF+  EL AR+ A++RR   
Sbjct: 64  VCRRV-QAQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDR 122

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              RG   + IV GD+ V+L  + V   G  +HLT  E+Q++  L+ R     ++E  L+
Sbjct: 123 ERERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLS 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++D  +    + +D  +  LR+KL     G   I TV   GY L 
Sbjct: 183 EVWDWPEGTSTRTVDSHVKALRRKL-----GGGLIRTVHSVGYALE 223


>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
 gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D I+LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKDE 226


>gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 219

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   IE  L+   F V     G           +  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTAYALVLLDLGLPRVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR +    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  ELLKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DL+VN  A+TVEV   R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL     G   I+TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVVEKE 219


>gi|26987916|ref|NP_743341.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|24982625|gb|AAN66805.1|AE016309_7 DNA-binding response regulator [Pseudomonas putida KT2440]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++  F V V   G          + D +ILDL L    G  
Sbjct: 7   RILIVEDDQRLAELTAEYLQANGFEVAVEADGARAARRIIDSQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R      P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRRVRSQ-YQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L ++   +   +    I LTG E+ ++ LL+      LT+E     L 
Sbjct: 126 VDSKRQDLAFGALRIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + + + ID+ I K+R K+ +       I+T+  +GY+    A 
Sbjct: 186 GVGYDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232


>gi|330993828|ref|ZP_08317760.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
 gi|329759096|gb|EGG75608.1| Transcriptional regulatory protein pcoR [Gluconacetobacter sp.
           SXCC-1]
          Length = 245

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 135/221 (61%), Gaps = 1/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD  +A  +   L+S +++V     G  G+ +     FD +I+D  L ++ G  
Sbjct: 24  RILLVEDDSKIAQEVIEELESRHYHVQHEVSGAAGLAMGLNAHFDVMIVDRMLPELDGLS 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR  ++  PV +LS +S+++D+V GL++G DDY++KPF  EEL AR+ A++RR   
Sbjct: 84  LIETLRERRVHVPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRRPDN 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +++  G L ++L  +TV  +G  I L  +E++++E L  R N  LT+ M L  +++ 
Sbjct: 144 SRHTMLRAGPLEMDLIERTVMREGVPIELLPREFRLLEYLMRRPNQVLTRNMLLEDVWNY 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           R  P+  ++DV I KLR+K+ + +G    I+++ G G++LR
Sbjct: 204 RFIPQTNLVDVHIGKLRRKI-DESGRPPLIQSIRGAGFMLR 243


>gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 227

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 123/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDDK L   I   L+   + V     GE+G  L     +DA++LD+GL    G 
Sbjct: 1   MRLLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGLPKKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R A    PV IL+      +KV+G  +GADDY++KPF+ EE++ARIRA++RR  
Sbjct: 61  TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA + +V G + ++  +  V V G  + LT  EY+++  L       +++   + HLYD
Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +   ++VF+ +LRKKL         I+TV G GY+
Sbjct: 181 QDFDRDSNTVEVFVGRLRKKLGVD-----LIQTVRGLGYM 215


>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 231

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ L+  +E  L+   +   +++ GE+  E      FD I+LD+ L  + GFE+
Sbjct: 6   LLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIMLPGMNGFEL 65

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            + ++  +I    P+ +L+      D++ G + G DDY+ KPF+  EL  RIRA++   R
Sbjct: 66  CQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R     Q ++    + ++L    V      + LT  E++++  L  RK    ++E  L+ 
Sbjct: 126 RKSAKMQEILNGDGIVIDLSRHRVTSDQRELELTLMEFKLLVALLKRKGEAQSRETLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D       + ID  I +LR+KL       N I+T+ G GY   
Sbjct: 186 VWDVDRNINTRTIDTHITRLREKLGEKG---NLIKTLRGIGYKFE 227


>gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2]
 gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa C3719]
 gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa 2192]
 gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 221

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 115/226 (50%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   I   L+ E   V     G          EFD ++LD+GL    G 
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ 
Sbjct: 61  DILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY 
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 110/222 (49%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD+ +   + L L+      V   + G   + L +  + D +ILD+ + ++ G+
Sbjct: 3   KILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPEMDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R LR      P+ +L+        V+G + G DDY+ KPF   ELVAR++A+++R +
Sbjct: 63  DLCRELRR-YYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L +N     VE     I L  KE++++  L      TLT+E  +  ++ 
Sbjct: 122 VSISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +DV I +LR++      G   I T+ G GY L 
Sbjct: 182 YDFEGNERTLDVHINRLRERFPEETFGFK-IRTIRGLGYRLE 222


>gi|163747146|ref|ZP_02154502.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
 gi|161379707|gb|EDQ04120.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 154/226 (68%), Positives = 184/226 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSRSIELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+A+I TP+ ILSG    E+K+RG   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  DVLRQLRLARIDTPILILSGADDTENKIRGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQS+I TG ++VNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHAQSVIETGQVAVNLDAKTVSVNDSPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKLS A GG++YIETVWGRGYVLR+   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSQATGGESYIETVWGRGYVLRDPEP 226


>gi|138893961|ref|YP_001124414.1| transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265474|gb|ABO65669.1| Transcriptional regulatory protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 220

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M++LL EDD  L   I  +LK +  + +     GED  +      +D ++LD  L +  G
Sbjct: 1   MKVLLAEDDLHLWELIVHLLKKKGIDHIDWVQEGEDAYDYAMAEFYDVVVLDWMLPNGDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ R LR    +  + IL+   +++D+V GL++GADDY+ KPF  +ELVAR++A+ RR+
Sbjct: 61  VDICRRLRQNGYTGAILILTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +     ++N  + T+      I LT +E+Q+++LL   +   + +E  L+ +
Sbjct: 121 FVPLQEETVTFHGFTLNRTSHTLHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +  +K ID  I  LRKKL +       I+TV G GY +
Sbjct: 181 WGWDADVSMKTIDATIKLLRKKLKDD-----VIQTVRGVGYKI 218


>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
 gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L   +E  L+ EN+ V     G             +   I D  +  + 
Sbjct: 1   MRLLLVEDEPDLGMVLEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR  + S P+ +L+    I D+V GL +GADDY+ KPF   EL+AR+R++ RR
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S       +  GD  ++      V     +I LT KE+Q++E         L+ E   N 
Sbjct: 121 SPELQPQQLQVGDWRLDYGTFVVVTPDKQQISLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+    E    ++   +  LR+KL   + G N IETV+G GY  + + 
Sbjct: 181 LWALSAESTSNVVAAQVRLLRRKLGEYSHG-NLIETVYGLGYRFQPHP 227


>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD AL   +E  L +E F+V V + G+ G +     +FD  +LD+ +  + G E
Sbjct: 4   KILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLNGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR +R A    PV +L+      ++V GL+SGADDY++KP    EL+ARIRA++RRS+ 
Sbjct: 64  TLRIIRQAS-HIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSKI 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     IV G L++    + VEV G  I+LT  E+ ++E+L+      + KE    
Sbjct: 123 TKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLAL 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                      + +DV +  +R+K+  ++ G +YI+TV+  GY L
Sbjct: 183 QAMGRTLVRFDRSVDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227


>gi|77460250|ref|YP_349757.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384253|gb|ABA75766.1| two-component system, response regulator [Pseudomonas fluorescens
           Pf0-1]
          Length = 241

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 123/231 (53%), Gaps = 3/231 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R    + PV +LS  +S   KV+ L  GA+DY++KPF  +E +AR+RA++R++   
Sbjct: 67  LREFREW-ATAPVLVLSVRASEGQKVQALDGGANDYVTKPFGIQEFLARVRALLRQAPAG 125

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q+ +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EAQQAALNFGPLTVDLAYRRVLLDGVEVGLTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
                +   + + +  LR+KL++      +I T  G GY L +N    T E
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRLLDNQVPSTIE 236


>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 247

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|307330420|ref|ZP_07609564.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883937|gb|EFN14979.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 230

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 21/234 (8%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  + 
Sbjct: 2   LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVSLC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR    +
Sbjct: 62  RRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAS 120

Query: 124 QS---------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                            ++  GDL ++ +   V   G ++ LT  E +++   S    T 
Sbjct: 121 GPGGRGAEPVPEEPDGGVLCFGDLEIDPEGMEVRKGGRQVALTPTEMRLLLEFSAAPGTV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  +++     + +++DV + +LR K+         IETV G GY L+
Sbjct: 181 LSRDRLLERVWEYGWGGDTRVVDVHVQRLRGKIGQD-----RIETVRGFGYKLK 229


>gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 219

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 78/224 (34%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+   F V     G           +  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL AR RA++RR++
Sbjct: 61  DLLKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I  GDL+VN  A+T +V G R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + E E   I+V I  LR+KL     G   I TV   GYV+ + 
Sbjct: 181 WQQEIESNAIEVHISNLRRKL-----GARLIRTVRNIGYVVEKE 219


>gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
 gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC
           43970]
          Length = 227

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDLSSTDDSVITHGDLTLNPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227


>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWIDTEQ 225


>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKAK-IITTVRGVGYVIKDE 226


>gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
 gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter
           bemidjiensis Bem]
          Length = 235

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 123/223 (55%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+ A+   +   L S+ F ++  D G  G+        D I+LDLGL D+ G E
Sbjct: 11  RILVIDDEAAIRRFLHSALSSDEFILHEADSGHGGLSAAAALRPDLILLDLGLPDLEGIE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R +R      P+ +LS     +DKV  L +GADDY++KPF   EL+AR+RA +RRS  
Sbjct: 71  VIRRIREWS-QVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSAV 129

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++ +  +GDL+V+L+ + V V+G  + LT  EY ++ LL    +  +T    L  ++ 
Sbjct: 130 QLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + +++ V I  LRKK+        +I T  G GY  ++
Sbjct: 190 VAYQDQPQVLRVTISNLRKKVERDPSRPRHITTEPGVGYRFKQ 232


>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 226

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   D G  G+E+ +  E D I+LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKDE 226


>gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR
 gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella
           enterica subsp. enterica serovar Typhimurium]
          Length = 228

 Score =  250 bits (639), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD      +   L    F V   D G  G  L    E+D +ILD+ L D+ G+
Sbjct: 1   MKILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR A    PV +L+ + +IE +V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF-LNHL 178
               +S +   DLSV+L ++ V   G+RI LT KE+ ++E     +   L + +     +
Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIAFFMV 180

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +       +   IDV + +LR K+ N  G K   +TV G GY+L 
Sbjct: 181 WVHEFLTADTNAIDVAVKRLRAKIDNDYGTK-LNQTVRGVGYMLE 224


>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
           family [Leptospirillum sp. Group II '5-way CG']
          Length = 231

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +   ++     E+F V  T  G +G+ L +    D I+LDL L  + G  
Sbjct: 4   KILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLS 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R+L+   ++   PV IL+  S   D++ GL+ GADDYI KPFN +EL+ARI+AI+RR+
Sbjct: 64  INRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRT 123

Query: 120 RGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                          + +++           + LT KE+ ++  L       L ++M L+
Sbjct: 124 EQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLD 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E   + +DV I +LRKKL      ++ ++TV   GY  
Sbjct: 184 LVWGADYEGTDRTVDVHIRRLRKKLGAY---QDRVQTVKQIGYKF 225


>gi|187934520|ref|YP_001884517.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
 gi|187722673|gb|ACD23894.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
          Length = 230

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ L+ EN  V+    G + +E+    +   I+LD+ +  + G   
Sbjct: 4   VLVVDDEKEIRDAIEIYLRGENLKVFKAADGLEALEILNNEKIHVIVLDIMMPKLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    + P+ +LS      DK+ GL  GADDYI KPFN  ELVAR+++ +RR    
Sbjct: 64  CLKIRET-ENLPIIMLSAKGEDSDKILGLNVGADDYIIKPFNHLELVARVKSQLRRYDKP 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + ++   DL ++  +K++ V+G  I +T  EY+++ LL+       + +     
Sbjct: 123 LNIEDEEQVLTVKDLVIDTVSKSIIVRGEEIKVTATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++D         + V I ++R+K+        YI+ VWG GY + + 
Sbjct: 183 VWDEPFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEKE 229


>gi|148658138|ref|YP_001278343.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
 gi|148570248|gb|ABQ92393.1| two component transcriptional regulator, winged helix family
           [Roseiflexus sp. RS-1]
          Length = 229

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD A       +L+   + V         ++  +    D ++LD+G+  + GF
Sbjct: 1   MEILVADDDLASVKLTSFLLEDAGYKVIKAYDATGVLQAVEQRSLDLVLLDVGMPKVSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R      P+  ++G   ++D+V GLQ G DDY+ KPF   EL+AR+ A++RR  
Sbjct: 61  DICRQIRRIS-DVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRN 119

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               +  + I  G L+++    TV    G  + LT  E++++  L       L+    L+
Sbjct: 120 SDLVNPVTRISQGPLTLDPIEHTVLFEDGRSVVLTPIEFRLLYYLMQNTGRVLSASQILS 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++    E E  ++ V+I +LR K+        YI TV   GY   
Sbjct: 180 KVWGYDYEGESNLVAVYIRRLRAKIEPDIDAPRYIITVRNLGYKFV 225


>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 86/225 (38%), Positives = 132/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GE+G+ L     +DAI+LD+ + ++ GF
Sbjct: 7   MRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGF 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 66  EVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 186 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 229


>gi|153956151|ref|YP_001396916.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219856477|ref|YP_002473599.1| hypothetical protein CKR_3134 [Clostridium kluyveri NBRC 12016]
 gi|146349009|gb|EDK35545.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219570201|dbj|BAH08185.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 232

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 109/226 (48%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI  +EDD +L   +   +K + + + V     +   L    ++D +ILD+ L D  G++
Sbjct: 3   RIFFVEDDFSLISGLSFAMKKQGYEIDVARTSLEAESLWTNGKYDLVILDVSLPDGSGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + + +R      P+  L+      + + GL  G DDYI+KPF     ++RI A++RRS  
Sbjct: 63  LCKKIRKTS-KVPIMFLTAADEETNIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSDN 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A + + + D+ V L    V   G ++ LT  EY+++ L     +  L+ E  L+ L+
Sbjct: 122 FNQADTELNSNDIKVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSSEQILSKLW 181

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   +  +   + V+I +LR K+ +  G    I TV   GY    +
Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDDPGKPQKIVTVRRMGYKWNTD 227


>gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 232

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD +L   I   L+   + V     G   +   +    D +ILDLGL  + G 
Sbjct: 1   MRILLVEDDLSLGEGIRTALRRAAYAVDWVHDGVSALMALQEQTMDLVILDLGLPRMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R  R   + TP+ +LS      D+  G   GADDY+ KPF+  EL+AR RA++RRS 
Sbjct: 61  EVIRTARARAVDTPILVLSARERAADRALGPDVGADDYLGKPFDTNELLARTRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  Q  +  G L ++    +V   G  + LT +E+ ++ LL  ++   + +E    HLY 
Sbjct: 121 GRTQPALQAGALRLDPAGMSVRWHGRDLDLTRREFALLWLLMEQRGRPIGRERIQQHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++     +DV + +LR+KLS A      I T+ G GY L E
Sbjct: 181 WDEDVASNAVDVHVHQLRRKLSAA-----VIRTIRGIGYALDE 218


>gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
 gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1]
          Length = 223

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E   V +   G +G+       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGTYIARGLREEGHTVDLVAEGREGLIQATSGAYDVLIVDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ M S++D++ GL +G DDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  TMVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  GDL + L  + V   G  I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 AMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +    +  I+TV G GY +
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DKPFDRELIQTVRGAGYRI 221


>gi|300723580|ref|YP_003712885.1| response regulator in two-component regulatory system with BaeS
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630102|emb|CBJ90739.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus nematophila ATCC 19061]
          Length = 235

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 116/220 (52%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L+S ++       G++ I+  + Y+ D I+LDL L  + G  V
Sbjct: 10  VLIVEDEPKLGRLLVDYLQSADYQTAWLKRGDEVIDHVQKYQPDIILLDLMLPGLDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 70  CREIRKFS-DIPIVMMTAKTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYRP 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +   G LS++ +          + LT  E+++++++S +     +++  LN+LY+  
Sbjct: 129 QDIISEQGALSIDENHFQARYLERVLELTPIEFRLLKIMSSQPGRVFSRDQLLNNLYNDH 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL      K++I +++G GY   
Sbjct: 189 RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S]
 gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi
           103S]
          Length = 218

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  ++ SI   L++E + V     G   +  C+ +  D ++LD+ L    G EV 
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVMLPGFDGLEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RGH 122
           R +  A  + PV +L+  +   D V GL  GADDY+ KPF+   LVARI A++RR+ R  
Sbjct: 62  RRI-QASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRTT 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++V GD+S++L A+ V   G  +HLT  E+ ++  L+ R    + +E+ L  ++   
Sbjct: 121 DSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGWG 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D    + +D  +  LR+KL     G + I TV G GY L 
Sbjct: 181 DGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYALE 215


>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 223

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ L  SI   L+   + V     GE   EL     +D I+LD+ L  I GF
Sbjct: 1   MKLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINLPKIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R       V +L+  + I+D+V+GL  GA+DY+ KPF+ EEL ARIR+++RR +
Sbjct: 61  TLLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++    +S ++ +KTV  +G  I LT KE  ++E L L +   +++E  L H++D
Sbjct: 121 LQEDTVLSAQGISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G        + V +  LR+KL  + G KN I    G+GY++ E
Sbjct: 181 GDMNEFSNTVRVHVSALRRKLKESLG-KNIIRNEIGKGYIIDE 222


>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
 gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
          Length = 233

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ +DD  +   + L L+++ F       G++ + +      D ++LD+ +  + G+ +
Sbjct: 13  ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR A    P+ +L+      +KV+G + G DDY++KPF+  EL  R+RA+++R +  
Sbjct: 73  SKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIG 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +   I  G++ ++     V      + L  KE++++  L+       T+   ++ ++   
Sbjct: 133 STQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGID 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + +DV I +LR++   A      IETV G GY L 
Sbjct: 193 YAGDDRTVDVHIKRLRERF--ATTHDFRIETVRGLGYRLE 230


>gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 231

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+++DD  +  ++ + L++   +V     G   + L      D ++LDLGL D+ G 
Sbjct: 1   MRVLVVDDDMQIIRAMRINLRARGHDVDTAADGASALRLAADNHPDVVLLDLGLPDMEGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV++ LR      P+ +LS   S  +KVR L SGADDY++KPF  +EL+AR+RA  RRS 
Sbjct: 61  EVIQRLRGWS-QVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R     ++ T   +V+L AK V  +G  + LT  E+ ++E+L+      +++   L+ ++
Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLREGEEVRLTPTEWHILEILARHAGQLVSQRQLLHDVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   + V++ +LR+KL        Y+ T  GRGY   
Sbjct: 180 GPAYQSETNYLRVYMAQLRRKLEPDPACPRYLITEAGRGYRFE 222


>gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa PAO1]
 gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 221

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   I   L+ E   V     G          EFD ++LD+GL    G 
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   + TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ 
Sbjct: 61  DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY 
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|251778829|ref|ZP_04821749.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083144|gb|EES49034.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 231

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 14/233 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++D++++ + I++ L  EN+ V   + G D I L K    D I+LDL L D  GF
Sbjct: 1   MKILLVDDEESILNLIKMNLIFENYEVITAECGIDAINLFKSESPDLIVLDLMLPDKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+   +      P+ ILS    + +K+ GLQ GADDYI+KPF+  EL+ RIRAI RR  
Sbjct: 61  EVIHEFQGINSEVPIIILSARDQLNNKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120

Query: 119 ---------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                     +     +I  G + + +  + V +    +  T  E+++I L+        
Sbjct: 121 KAKAIGKNEVKNKTNDIIEKGFIKIIVPERRVFIDDKEVIFTHIEFEIILLMVQNPFKVF 180

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           T+E  L+ ++        + +D+ I ++R+KL    G ++ I+T++G GY L 
Sbjct: 181 TREELLDKIWGYSFVGNTRAVDIHIKRIRQKL---IGNEDVIKTIYGVGYRLE 230


>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
 gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 242

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 237


>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 226

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 110/224 (49%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL +DD     S+   L+ E F       G + + L + +  D + LD+ +  + G+
Sbjct: 1   MTILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +R A    PV  LS  S   D V GLQ GADD+I KPF K EL+ARIRA +RR  
Sbjct: 61  EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  +      DL V       E  G  I L+ +E  ++ELL  +    + ++  LN  
Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +     PE + +D  I KLRK++    G    IETV G GY  R
Sbjct: 181 WGMDYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYRYR 224


>gi|117921622|ref|YP_870814.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117613954|gb|ABK49408.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 237

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGLDGLS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQNQ 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++     + +    + LT  E++++ LL+ +    L+++     L
Sbjct: 128 PPQAESHCLTFGKLSIDPHTHAIRLDNKEVDLTSHEFELLWLLASQAGQVLSRQYIYQLL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL++       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLNDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
 gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
           CI]
          Length = 223

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 88/225 (39%), Positives = 131/225 (58%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L  E F V     GEDG+ L     +DAI+LD+ L ++ GF
Sbjct: 1   MRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V+V G  + LT K+Y+++E L       L +E   + ++
Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 223


>gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18]
 gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Rothia mucilaginosa
           DY-18]
          Length = 247

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 23  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPSALAIARDWRPDVLVLDIMMPGFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 83  ELLSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +   + +V GDL +N D + V   G +I+LT  ++ ++  L       ++K   L+++
Sbjct: 143 VASIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+    G +  I TV G GYVLR 
Sbjct: 203 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVLRP 245


>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
 gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Pediococcus acidilactici 7_4]
          Length = 228

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 89/227 (39%), Positives = 136/227 (59%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K+LA  +EL L+ E +   V   G  G+E     +FDAI+LDL L +I G E
Sbjct: 3   KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEINGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R  KI TP+ +++   SI D+V GL  GADDYI KPF  EEL+AR+RA++R+   
Sbjct: 63  VCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRQVDL 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+ +   D+ +  + + V+     I+LT +EY+++ LL    N   ++E  L
Sbjct: 122 EEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLTKREYELLLLLMENVNVVQSRETLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++   D  E  ++DV+I  LR K+ + AG  +YI+TV G GYV+R
Sbjct: 182 SKVWGLEDGVETNVVDVYIRYLRNKI-DVAGQPSYIQTVRGTGYVMR 227


>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 226

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 130/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKDE 226


>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
          Length = 219

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  + +++   L    + V     G +         +  +ILD+ L  + G 
Sbjct: 3   IRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  K  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 63  ELLREFRA-KNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ ++ 
Sbjct: 122 ALAKE-IRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   +   I  LR KL         I+T+ G GY L E+
Sbjct: 181 YDFESDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219


>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus Peru-466]
 gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
          Length = 229

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSNT 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     I   +L +    +        + LT  E+ ++          LTKE     
Sbjct: 122 QKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLLEE 228


>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 273

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
 gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7]
          Length = 221

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/219 (36%), Positives = 111/219 (50%), Gaps = 5/219 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   I   L+ E   V     G          EFD ++LD+GL    G 
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     TPV +L+    + D+V GL SGADDY++KPF+ +EL AR+RA+ RR+ 
Sbjct: 61  DILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G L ++     V + G  + L  +EY ++ LL       L++      LY 
Sbjct: 121 GRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              + E   I+V +  LR+KL N       I TV G GY
Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGY 214


>gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104]
 gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22]
 gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322]
 gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8]
 gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG]
 gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11]
 gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583]
 gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis]
 gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104]
 gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22]
 gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200]
 gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322]
 gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1]
 gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200]
 gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3]
 gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8]
 gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis
           Merz96]
 gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
 gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis
           Fly1]
 gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis
           CH188]
 gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG]
 gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11]
 gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712]
 gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613]
 gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Enterococcus sp. 7L76]
 gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0411]
 gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0109]
 gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2134]
 gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 512]
 gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0102]
 gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0635]
 gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis
           DAPTO 516]
 gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0470]
 gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4000]
 gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis
           TX2141]
 gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis
           TX4244]
 gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0031]
 gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1341]
 gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1346]
 gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309B]
 gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0630]
 gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis
           TX0309A]
 gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62]
 gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF]
          Length = 230

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + 
Sbjct: 1   MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R
Sbjct: 61  GFEICRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +          L+   +++V+  A  V V  + +  T KEY+++  L    N    KE 
Sbjct: 120 YQLLSKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEE 179

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++     + EV  + V I ++R+KL  A    + IET+WG GY  
Sbjct: 180 LFESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRF 228


>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
           [Meiothermus silvanus DSM 9946]
 gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
           [Meiothermus silvanus DSM 9946]
          Length = 256

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 15/239 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED++ LA  +   L+ E   V V   GE  ++L +  + D +ILD+ L  + G +
Sbjct: 4   RVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLSGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R A   TPV  LS     E++V GL+ G DDY+ KPF+  EL+ R++ ++ R   
Sbjct: 64  VCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRLEW 123

Query: 122 HAQSL--------------IVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKN 166
             ++               +  G   V+       +   R+  L  +E  ++ LL+ R  
Sbjct: 124 GQEAYFRRAERGVEVAPAGLSFGGHQVDFRTWNATLADGRVEPLGEREIGILRLLAERAG 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++++  L+ ++ G   P  + +D FI +LRK          Y+ TVWG GY      
Sbjct: 184 EVVSRDEILDRVWGGDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGYRFTPEG 242


>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
 gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
          Length = 236

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+   +   +I    L ++  ++ V    + + +   EY+++           T+  
Sbjct: 121 VLRRANALNGDKVIDANGLILDPVSQRVSFGSNILDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGADRFVQTVRGTGYRFSTRA 231


>gi|27378242|ref|NP_769771.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27351389|dbj|BAC48396.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 247

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 122/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +           GE+G+ + +  ++D +++D  L    G 
Sbjct: 22  MRLLIIEDDRESADYLVKAFREVGHIADHAPDGEEGLAMAENGDYDVLVVDRMLPKRDGL 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ ALR    + PV ILS +  ++D+++GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 82  SLIGALRDKGNTAPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRRG 141

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+  +   GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 142 GPAEDTLYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 201

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 202 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMIRD 244


>gi|271499378|ref|YP_003332403.1| winged helix family two component transcriptional regulator
           [Dickeya dadantii Ech586]
 gi|270342933|gb|ACZ75698.1| two component transcriptional regulator, winged helix family
           [Dickeya dadantii Ech586]
          Length = 226

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L + +   L +E F+      G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDAELGNMLCEYLTAEGFSTSQVMTGKEGIDGAMSSQYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R    + P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRRNH-AIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             ++       +  GDL V    ++ E +G    LT  E+ ++ELL    +  +TK+   
Sbjct: 120 DKSEKSEDAGTVSYGDLVVCPSTRSSEWRGKAFDLTASEFNLLELLMRSSSRVVTKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL+        IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLAALDECNLTIETVRSVGYRIR 226


>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
 gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
          Length = 240

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 9/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   I   L+  ++   V   G++ ++         I+LD+GL ++ G +V
Sbjct: 6   ILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGLPEMDGLDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+  LS      D++ GL+ GADDY++KPF+  EL+AR+ AI++R  G 
Sbjct: 66  CRHLRRTS-EVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKRYGGL 124

Query: 123 AQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G + ++   + V V    + LT  E+ ++  L  R     T+E  L
Sbjct: 125 TAAQTDEDLPALRFGAVELDRSQRHVSVAETPVTLTAIEFDILATLLARPKIVFTREQIL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              Y        + ID  I  +R KL +A  G + IETV G G+ L
Sbjct: 185 QSAYRDNIHVSDRTIDSHIRNIRAKLGSAGCG-DAIETVHGVGFRL 229


>gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 223

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK + +++   L+ E F+V       + I      ++D +++D+ L D  GF 
Sbjct: 3   KILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLKDGNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A R      PV  LS      + V GL+ GADDYI KPF   EL++RIR  +RR+ G
Sbjct: 63  VCSAARENN-DIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRN-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++I   ++ V+     V   G  I L+  EY+++ +    K   L++   L  +++ 
Sbjct: 121 KAGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLLLVFLNNKGAVLSRSRLLEEIWNI 180

Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +      + V+I +LR+K+ +      +I+TV G GY 
Sbjct: 181 AGEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220


>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 220

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 125/220 (56%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED+  +   +E  L+ E + +   + G  G EL + + FD I+LD  L  I G 
Sbjct: 1   MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ +A+R+    TP+  L+   ++++ + GL++GA+DYI KPF+ EELV R++   R   
Sbjct: 61  DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFR--N 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+++V+L    V      I+LT +E++++  L  +K    T+   L  ++D
Sbjct: 119 KATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E +  +IDVF+  +RKKL N    ++YI+T+ G GY+
Sbjct: 179 INFEYDTGVIDVFMNAIRKKL-NLKIEEDYIKTIRGIGYI 217


>gi|58580728|ref|YP_199744.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|58425322|gb|AAW74359.1| two-component system regulatory protein [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 297

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 3/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 65  MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 124

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 125 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 184

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A T+ + G  I L  +EY++ ++L  R    + K+   N L+ 
Sbjct: 185 GQASEVVQIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG 244

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             D+     I++++ +LR+KL   A     I TV G GY L E       E 
Sbjct: 245 FDDDAGPNAIELYVGRLRRKL---AAAPLRIVTVRGAGYKLEEADPHAPVEP 293


>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
 gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
          Length = 259

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 109/230 (47%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  +   I  +L+   F V     G +  +       D ++LD+ L    G +
Sbjct: 26  HILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLPGQSGLD 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D+V GL+ GADDY+ KPF++ EL+ARIRA++RR++ 
Sbjct: 86  LCRTIRARS-EVPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRAQA 144

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A          +V  D  ++   + +    G  + L+  EY ++          L+++ 
Sbjct: 145 GANRAGMVSGDRMVFSDWVLDTRRRELAAPDGSAVDLSSGEYDLLLAFCEHPQRVLSRDQ 204

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+   +   +   + +DV + +LR+KL         I+TV G GY+   
Sbjct: 205 LLDLARNRISDSVDRSVDVMVSRLRRKLEPLPDSPAVIKTVRGAGYMFVP 254


>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 228

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 52/226 (23%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  L   ++  L ++ + +     G++ + + + +E   IILD+ L ++ G+ 
Sbjct: 4   KILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIMLPELDGWS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+ +L+     +D + G + GADDY++KP++   L+AR + ++     
Sbjct: 64  VCRRIRKTS-NVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122

Query: 122 H-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +++  + ++  ++TV V      +T  E++++  L   +   +T+E  + 
Sbjct: 123 SVISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLIT 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++      + + I+  I  LR KL   A   N+I TV   GY   
Sbjct: 183 KIWGYEFAGDDRTINSHIRNLRHKLGKKA---NHIVTVVRAGYKFE 225


>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 226

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 119/227 (52%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSE--NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+IL+++D+ ++ + I + L+ E   + V     G + +E       D +ILD+ L D  
Sbjct: 2   MKILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+LR  R      PV +L+  S + DK+ GLQ GADDY++KPFN  EL+ R++ + RR
Sbjct: 61  GYELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 120

Query: 119 SRGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +      +  +I  G++ +    + V V G  I LT +E+ + +L          ++  
Sbjct: 121 VKKTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L  ++        + +D+ + +LRKKL  +     YI+T++G GY L
Sbjct: 181 LEKVWGFEYIGNTRAVDIMVQRLRKKLGTSG---EYIKTIYGVGYKL 224


>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
 gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
           [Kineococcus radiotolerans SRS30216]
          Length = 226

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 127/224 (56%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++ +  +  +L+ E ++V VT+ G + +E       D ++LDL L  +PG E
Sbjct: 3   RILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S PV +L+   S  DKV GL+ GADDY++KP++  EL+AR+RA++RR   
Sbjct: 63  VCRQLRTRS-SVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q+ +  G + +++D   V V+G R+ L  KE++++ELL       LT+   ++ +
Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV + +LR K+        ++ TV G GY   
Sbjct: 182 WGSDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGYKFE 225


>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
 gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
           [Simonsiella muelleri ATCC 29453]
          Length = 232

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+ A+A  I   L+   F V V+   E+   L      D I+LD  L    G 
Sbjct: 3   IHILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTSGV 62

Query: 61  EVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + +  LR    +   P+ +L+  S   DK  GL  GADDYI+KPF+  ELVAR+ A++RR
Sbjct: 63  QFVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRR 122

Query: 119 SRGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +++I    L+++    +V+V   +I  +  E++++       N   T+   L+ 
Sbjct: 123 RAPQKTENIIRLSSLTLDPSQFSVQVADKKIEFSPSEFKLLHFFMTHPNRIYTRRQLLDL 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      E + IDV I +LR+ L +     ++++T+ G GY    +
Sbjct: 183 VWGDHIFVEERTIDVHIRRLRRGLESV-NLAHWVQTIRGSGYQFSPD 228


>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 223

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  SI  +L  E F V     GEDG+ L     +D I+LD+ L  I GF
Sbjct: 1   MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYMLKEQ 223


>gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
 gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM
           15053]
          Length = 228

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  L+  I   ++ E + V      + G+   +    + I+LD  L D  G 
Sbjct: 1   MRILIIEDDGGLSRGITFTMEREGYKVECCSGYKQGLAKVQKTPPELILLDWNLPDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           ++ + +R      P+ +++      D+V  L+ GADDYI+KPF+   L AR+ A+ RR  
Sbjct: 61  DLCKKIREFS-HVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYV 119

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  ++ L+V+GD+S++            + L+  E+++++     KN  L KE  L ++
Sbjct: 120 LKTGSKRLLVSGDISIDGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILEYV 179

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D G    E   + V I +LR+KL   +    YI+T+ G GY+  E
Sbjct: 180 WDMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGYLWEE 225


>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
           [Paenibacillus sp. Y412MC10]
 gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. Y412MC10]
          Length = 225

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/222 (25%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +DD  +   +   L++E + V+    GE+   L    +    ++D+ + +  G+
Sbjct: 2   IHILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R      PV +L+    + DK RG   G DDY++KPF   EL+ RI+A++RR +
Sbjct: 62  QLCEEIRR-YYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I   + +++  +  V+  G  + L  KE++++  L+   + T ++E  +  ++ 
Sbjct: 121 MVSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + + + +DV I +LR++ ++ +G    I TV G GY L 
Sbjct: 181 TDFDGDDRTVDVHIKRLRERFADRSGDFR-IRTVRGVGYKLE 221


>gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
 gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
           155]
          Length = 249

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+  LA  + + L+ E +++     G   I   +    D ++LD+ L D+ G 
Sbjct: 24  IRVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVMLPDMSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+ 
Sbjct: 84  DVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTG 143

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             ++     IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 144 VTSEDGGAKIVVGDLVLDEDSHEVTRGGDPIALTATEFELLRFMMRNAKRVLSKAQILDR 203

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++         I+++++  LRKK+   +G +  I T+ G GYVLR  
Sbjct: 204 VWSYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLRPP 248


>gi|325478552|gb|EGC81664.1| putative sensory transduction protein RegX3 [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 237

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K+++  ++  L  + +NV+    G + +++    E D IILDL L  + G +V
Sbjct: 6   ILIVEDEKSISDIVKNYLIRDGYNVFQAFDGLEALKIFDNEEIDLIILDLMLPKMSGEDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ +R  K   PV I S      D++ GL+ GADDY++KPF+ +ELV R++A++RR   +
Sbjct: 66  IKNIR-NKSKVPVIITSAKVEEIDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEKY 124

Query: 123 AQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                       G L ++L        G  + LT  E+ +I+ L    N   T++  +  
Sbjct: 125 NIPRADIIKTSDGRLLMDLKYNRFLKDGEEVFLTKNEFSIIKTLFSSPNKIFTRDEIIEL 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +    +   + ID  I  +R+K+ +      YI+T++G GY 
Sbjct: 185 TFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 229

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/229 (25%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++  L   +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
 gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus
           EC20]
          Length = 235

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 122/234 (52%), Gaps = 10/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           +ILL+ED+++LA  I+  L  E ++      G++ + L   +   FD I+LD  L    G
Sbjct: 4   KILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPIYDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R      P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR 
Sbjct: 64  ITVARRIRKES-DIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  A+        +V G+L +++    V+V G  I LT KE+ ++  L        T++ 
Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            LN ++    + +  ++DV+I  LR KL +  G    I TV G GYVLR + ++
Sbjct: 183 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLRTDHEE 235


>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 242

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N    + GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLREN 224
              E + +D  I  LR KL  A    + +++TV+G GY   + 
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKAHFPIDHHLKTVYGVGYRWVDT 240


>gi|197302707|ref|ZP_03167761.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
 gi|197298289|gb|EDY32835.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC
           29176]
          Length = 228

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 120/228 (52%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +   +   LK + + V+    G   ++     + D IILD+ L    G  
Sbjct: 3   KILIIEDDLEINALLADFLKEKGYAVHCQYDGLHVLDFLNKEKIDLIILDIMLPYRSGDI 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R  K + PV I+S   + ++K+  L+ GADDYI+KPF+ EE++ARI + +RR + 
Sbjct: 63  ILSDVR-KKFTIPVIIISAKETTQNKIDLLRLGADDYITKPFDMEEVLARIESNLRRVQF 121

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   +L+++L+  T  + G  + LT KE+ ++ELL    +   +K      ++
Sbjct: 122 QNSQTECLQYNNLTLDLEKNTAFLNGIELSLTAKEFGILELLMKYPDKVFSKSNLFQSVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D     E   ++V I  LR KL        +I+TVWG GY L + AKD
Sbjct: 182 DTEYIAEDNTLNVHISNLRNKLKAICSDTEFIDTVWGIGYRLHK-AKD 228


>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 215

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 119/220 (54%), Gaps = 6/220 (2%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++EDD  +   + L L  E + V V   G++ ++  +    D +ILD+ L  + GF VL
Sbjct: 1   MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLPGLDGFSVL 60

Query: 64  RALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
             +R       PV +L+    ++D++RGL+SGADDY+ KPF  EEL+ARI A++RR    
Sbjct: 61  EEIREYISTDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRRKGKV 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               I   ++++++ ++   + G  + L+  E+ ++ +L       ++KE  L  ++   
Sbjct: 121 --ERISYFEITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGSE 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D     +++V+I  LRKKL         I+TV G GYV+R
Sbjct: 179 DWGNPNVVEVYINYLRKKLGKTG---ERIKTVRGSGYVVR 215


>gi|293603634|ref|ZP_06686055.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
 gi|292818070|gb|EFF77130.1| two component response regulator [Achromobacter piechaudii ATCC
           43553]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 10  KLLVVDDDPALRQLLADYLNRHGYDTLLAPDATDLSSRITRYAPDLLVLDRMLPGGDGAD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 70  ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRKRG 129

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +  G    +   + +   G  + LTG E  ++E L       L++E  L  
Sbjct: 130 PSALTKDAPVTFGPFLFDPSTRQLSRDGTVVKLTGGEINLLEALVRNAGKPLSRERLLAL 189

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D    E   + ID+ I +LR+ + +      +I+TVWG GY    
Sbjct: 190 ARDDDAGERNDRAIDIAILRLRRVIEDDPKQPRWIQTVWGIGYRFSP 236


>gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
 gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
          Length = 232

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++L+         I+TVWG GY + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKHTNSNAPAIKTVWGLGYKME 226


>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
 gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +       V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + ID  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTIDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDT 223


>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L  SI  +L  E F V     GEDG+ L     +D I+LD+ L  I GF
Sbjct: 1   MRLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDY+ KPF   EL ARIRA++RRS 
Sbjct: 60  EVIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K ++V G  I LT K+Y+++E L       L +E   + ++
Sbjct: 120 NLTTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 180 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYMLKEQ 223


>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 240

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D   +   ++  L+     V     G++   L +  EFD ++LDL +    G  +
Sbjct: 8   ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMPGEDGLTL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+ M    D++ GL+ GADDY++KPFN  EL+ARI+A++RR+   
Sbjct: 68  CRELRAKSC-MPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTNVE 126

Query: 123 AQS-------LIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            Q         +      ++++ +  V+ +G  + L+  E+ ++ +   R    L+++  
Sbjct: 127 PQPAPETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+           + ID  + +LR+KL         I+T+WG GY+   + 
Sbjct: 187 LDLARGREAVAFDRAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLFAADV 237


>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
           [Shewanella frigidimarina NCIMB 400]
          Length = 228

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 127/225 (56%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L+  +  +L+ E F +     GE G+ + +  +FD I+LD+ L  + GFE
Sbjct: 3   RILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLRALR  K  TP+ +L+      D+V GL+ GADDY+ KPFN  ELVARIRAI+RR++ 
Sbjct: 63  VLRALRQRK-QTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRRAQT 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A  ++  GDL ++   +        I LTG E+ ++  L  +    +TKE    
Sbjct: 122 TQQDSQANEMMQFGDLRLDPTRQETYCNEQLIILTGTEFSLLFHLIEKSGELVTKESLSE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +  P  + +D+ +  LRKKL     G+  ++T+ G+GY+ 
Sbjct: 182 NVLGKKLMPFDRSLDMHLSNLRKKLPERQDGRPRVKTLRGKGYIW 226


>gi|330888203|gb|EGH20864.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. mori str. 301020]
 gi|330988448|gb|EGH86551.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G DG+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + GH + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTDDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
 gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 54/220 (24%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +DD+ +   I L L+++ F +     GE+     + +  D  ++D+ +    G+
Sbjct: 2   IQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + ++      PV +++      DK++G   G DDY+ KPF+ +E+VAR++A++RR R
Sbjct: 62  ELTKEIKE-YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A ++I  G++ ++     +        L  KE++++  L        T++  +  ++ 
Sbjct: 121 VEANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E + + +DV I +LR++L++       I+T+ G GY 
Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|297154563|gb|ADI04275.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 132/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  I+LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRRENNATPILVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  +  +++  +  LRKK+ +AA  +  ++TV G GY L ++
Sbjct: 181 -DEAWDPNLVEARVSALRKKV-DAAFHRQSLQTVRGTGYRLVDD 222


>gi|319778506|ref|YP_004129419.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
           MCE9]
 gi|317108530|gb|ADU91276.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
           MCE9]
          Length = 235

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD  L   +   L    ++  +   G D  +    +  D I+LD  L    G +
Sbjct: 7   KVMIVDDDPDLRQLLAQYLNRHGYDTLLVSDGNDLADRIIRFSPDLIVLDRMLPSGDGVD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      P+ +L+      D+V GL+SGADDYI KPF+  EL+ARI  ++RR +G
Sbjct: 67  FCRNLRDQHEDIPIILLTARDETADRVLGLESGADDYIGKPFDPRELLARIETVLRRKKG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    ++ I  G  + +   + +      + LTG E  ++E      +  L++E  L  
Sbjct: 127 ASTLIKETPIHFGPFTFDPIKRQLLKDNEVVKLTGGEINLLEAFVQNPSKPLSREKLL-A 185

Query: 178 LYDGRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L    DE E   + ID+ I +LR+ L +      +I+TVWG GY     A
Sbjct: 186 LSRNDDEGERNDRAIDIAILRLRRALEDDPKDPRWIQTVWGVGYRFSPKA 235


>gi|222082735|ref|YP_002542100.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
 gi|221727414|gb|ACM30503.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V             +    D IILDLGL D PG +
Sbjct: 7   KILVVDDEPPIRKLLRVGLSAQGYLVNEAPNAAAAKLSVEEDRPDLIILDLGLPDKPGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +  PV ILS  +     V+ L++GADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWREDGLEIPVVILSSRTDEAGIVKALETGADDYVTKPFGVNELAARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSLDLVKRIVKVDGKEVKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V++ +LR+K+        YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYVRQLRQKIEQIPDQPQYITTETGVGYRLREP 229


>gi|42520575|ref|NP_966490.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410314|gb|AAS14424.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 256

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 124/233 (53%), Positives = 164/233 (70%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D            +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDYYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFLN
Sbjct: 121 RRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLN 180

Query: 177 HLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP    I+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 246

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D+ +L+  + + L+   ++V V   G + +++ K +  D ++LD+ +    G 
Sbjct: 22  IRALVVDDEPSLSELMSMGLRMAGWSVAVAADGPEAVKMAKDFRPDVLVLDVMIPGFDGV 81

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R      P   L+   +++D++ GL +G DDY++KPF+ EE++ R+  +V+RS 
Sbjct: 82  EVLGRIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSG 141

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +NLD + V   G  + LT  +++++  L       ++K   L+ +
Sbjct: 142 VAAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLRYLMENPKRVISKAQILDRV 201

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+   A     I TV G GYV++ 
Sbjct: 202 WNYDFGGQANIVELYISYLRKKV--DAVHPPMIHTVRGAGYVIKP 244


>gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 113/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +   ++  L SE + V     G +G +L K  EF+ I+LD+ L    G E
Sbjct: 3   KILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTKLAKSGEFNLILLDIMLPYKSGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV ILS    +  K+  L+ GADDYI+KPF+  E+ AR+   +RR+  
Sbjct: 63  ILKEIRTWG-DVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL V  + K V V G  + LT KEY M+ELL    N   +K      ++
Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +     +   +   +  LR KL        YIETVWG GY L
Sbjct: 182 NEEYLGDDNAVKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223


>gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 218

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+++D+  ++ SI   L++E + V     G   +  C+ +  D ++LD+ L    G EV 
Sbjct: 2   LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVMLPGFDGLEVC 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RGH 122
           R +  A  + PV +L+  +   D V GL  GADDY+ KPF+   LVARI A++RR+ R  
Sbjct: 62  RRI-QASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRTT 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++V GD+S++L A+ V   G  +HLT  E+ ++  L+ R    + +E+ L  ++   
Sbjct: 121 DSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGWG 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D    + +D  +  LR+KL     G + I TV G GY L 
Sbjct: 181 DGASSRTVDSHVKALRRKL-----GGDVIRTVHGVGYALE 215


>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
 gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
 gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
 gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G+ G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKINGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
 gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
           1131]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIED       ++  L+   F V VT+ G DG+       +  +ILD+ L  + G+
Sbjct: 1   MRILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIMLPGMNGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR AK + PV  L+   +++D+++GL+ GA+DY+ KPF+  EL+AR++  ++   
Sbjct: 61  EILKILRTAK-NIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLK-IN 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I   DL ++L    VE  G +I LT +E+ ++    L  +  L + +  + ++ 
Sbjct: 119 QPASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E +  IIDV I +LRKK+ +       IET+ G GY L
Sbjct: 179 IDFESDTNIIDVAIRRLRKKI-DDEFDVKLIETIRGMGYRL 218


>gi|171741317|ref|ZP_02917124.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283455323|ref|YP_003359887.1| response regulator protein Vicr [Bifidobacterium dentium Bd1]
 gi|171276931|gb|EDT44592.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC
           27678]
 gi|283101957|gb|ADB09063.1| Response regulator protein VicR [Bifidobacterium dentium Bd1]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+++    +      E ++V     GEDG+EL      D ++LDL L  + G  
Sbjct: 3   RILIVEDEESYREPLVYQPTREGYDVSAAATGEDGLELFTQGGVDLVLLDLMLPGLDGTA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  S+  DKV GL+ GADDY++KP++  EL+AR+RA++RR++ 
Sbjct: 63  LCRRIREQS-RVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQM 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+S         +V GD+S+ +    V V+G  +    KE++++E L   K   +T+  
Sbjct: 122 VAESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++ ++      + K +DV + ++R K+        Y+ TV G GY +
Sbjct: 182 LIDRIWGSDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKI 229


>gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 222

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 128/224 (57%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED+  +A  +E  L+++ F   V     + +++   +EFD +I+DLGL    G +
Sbjct: 3   RILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGETLDMALSHEFDLLIMDLGLPGKDGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR      P+ IL+    I DKV GL+ GADDY++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNHL 122

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   + ++  G +S++L  + V V+G R+ L+ +E+ + E L       +++E  L+H+
Sbjct: 123 PKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSHV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    +P   I+DV+I  LRKKL +       IETV G GY LR
Sbjct: 183 WGYDYDPGSNIVDVYIGYLRKKLGSD-----LIETVRGMGYRLR 221


>gi|58696682|ref|ZP_00372233.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225630493|ref|YP_002727284.1| two component transcriptional regulator [Wolbachia sp. wRi]
 gi|58537144|gb|EAL60252.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592474|gb|ACN95493.1| two component transcriptional regulator [Wolbachia sp. wRi]
          Length = 256

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 124/233 (53%), Positives = 164/233 (70%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D            +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDYYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFLN
Sbjct: 121 RRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLN 180

Query: 177 HLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP    I+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD   A  +   L+ E  +V V   G   I+  +  E D ++LD+ +    G +V
Sbjct: 5   VLVAEDDVKQAELVRRYLEREGHSVLVVHDGRSAIDEARRREPDLVVLDVMMPKADGLDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R      PV +L+  ++ +D + GL  GADDY++KP++  EL+AR+R ++RR R  
Sbjct: 65  CRVIRAES-DVPVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVRRS 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  GDL V+     V V G  +  T  E++++E L+ +     T++  L  ++ 
Sbjct: 124 RDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEVHG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  + +DV +  LRKK+         I TV+G GY L + +
Sbjct: 184 FDRFITRRTVDVHMLNLRKKIEPDPRRPTRILTVYGVGYKLTDGS 228


>gi|225874253|ref|YP_002755712.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
 gi|225794322|gb|ACO34412.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC
           51196]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 132/225 (58%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MRIL++ED++ LA +I   ++    + V +   G  G +LC   E+D ++LDL L  + G
Sbjct: 1   MRILVVEDEERLAGNIAAAMREGPGWAVDLAHSGLAGRDLCLQTEYDLVLLDLMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VLR +R   I+TPV +L+ ++     +  L +GADDY++KPF+  EL+AR +A++RR 
Sbjct: 61  LGVLRDMRGKGIATPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G +  +I  G L ++   K+V   G  I L+  EY+++E L  R  + ++K+  L HLY
Sbjct: 121 KGVSHPVINIGALVLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           D   E    +I+  I  LR+KL+   G   +IET+ GRGY L  +
Sbjct: 181 DYNWEHHSNVIEAHISNLRRKLNQQEGDA-WIETLRGRGYRLVAH 224


>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
 gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L++  F       GE+ + L   +  DA++LD+ +    GF V
Sbjct: 6   VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+  L+ +    DKV+GL+ G DDYI KPF+  EL+AR+ A++RR +  
Sbjct: 66  CARIREQS-DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +  GDL+++   +TV V G  + LT KE++++  L+  +    +++  L  ++ 
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  LR KL +AA    +I+TVWG GY   
Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223


>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
 gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus CMCP6]
 gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
 gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
           vulnificus MO6-24/O]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   +  +L  E FNV   + GE G++     E D I+LD+ +  + G + 
Sbjct: 4   ILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSA-EIDLILLDVMMPKLNGIDT 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARI+AI+RR+   
Sbjct: 63  LKKLREQW-DTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRRTSAT 121

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +   I   DL +          G ++ LT  E+ ++        +TLTKE     +
Sbjct: 122 KAPKSSDCIEYQDLKIYPGRLEAYCAGTQLDLTATEFALLSHFMQNPGSTLTKETLSLDV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              R     + ID+ +  LRKKL   A GK+ I+T+ GRGY++
Sbjct: 182 LGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTLRGRGYLM 224


>gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
 gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family
           [Leptothrix cholodnii SP-6]
          Length = 221

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  ++   L+ + F V     G           + A +LDLGL    G 
Sbjct: 1   MRILLVEDDPLLGDALRAGLRQQGFQVDWVREGPAAERELLTGAYQAAVLDLGLPGKDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  KI+TPV +L+  +++ D+V  L  GADDY+ KP + +EL AR+RA+VRR+ 
Sbjct: 61  EVLADLRRRKIATPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  G++ +   ++ V  +G RI L  +E+ ++  L L     LT++    HLY 
Sbjct: 121 GQVEDNLRVGEVELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V I  LRKKL         IETV G GY++
Sbjct: 181 WGREVESNAIEVHIHHLRKKL-----APELIETVRGVGYMI 216


>gi|313681777|ref|YP_004059515.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154637|gb|ADR33315.1| two component transcriptional regulator, winged helix family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL+I+DD A+   +E+ L +  ++      G++G+          ++LDLGL D+ 
Sbjct: 1   MKETILIIDDDSAIRKLLEVALDAAGYHPVTIATGKEGLNRAAIEAPALVLLDLGLPDMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E L   R    S PV +LS  S   +K+  L+ G DDY++KPF   EL+ARI+A +RR
Sbjct: 61  GKEFLSQFREWSQS-PVIVLSARSGEAEKIAALEGGCDDYLTKPFGTGELLARIKASLRR 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S G   S +++G+LS+++ + TV +    + LT KE+ ++++L       LT    L
Sbjct: 120 RGISMGDNTSGLISGNLSLDIASHTVMLNNEELKLTPKEFDLLKILMQNSGKVLTHAWLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++    + E   + VFI +LR+K+   +     I T  G GY   
Sbjct: 180 KEIWGIGYQNETHYLRVFINQLRQKIETDSTRPKRIVTETGIGYRFV 226


>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  +
Sbjct: 6   VLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR    
Sbjct: 66  CRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124

Query: 123 AQS--------------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           +                ++  GDL V+ +   V   G ++ LT  E +++   S    T 
Sbjct: 125 SGPGRGAEAEPDEPEGGVLRFGDLEVDPEGMEVRRAGQQVALTPTEMRLLLEFSAVPGTV 184

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 185 LSRDRLLERVWDYGWGGDTRVVDVHVQRLRGKIGQD-----RIETVRGFGYKLR 233


>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
 gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Vibrio parahaemolyticus K5030]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSNT 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     I   +L +    +        + LT  E+ ++          LTKE     
Sbjct: 122 QKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLLEE 228


>gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
 gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD   A  I   LK++   V   D G+DG       ++D ++ D  L  + G 
Sbjct: 1   MRVLVVEDDLETADYIASSLKAQGHAVDHCDNGKDGFLNALDNDYDVMVFDRMLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++++R A I TP+  LS M  I D+V GL +G+DDY+ KPF+  EL AR+ A+VRR  
Sbjct: 61  TLIKSVRGAGIETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++   DL +NL  +TV   G  + L  +E+ ++E L    +  +T+ M L  ++
Sbjct: 121 LKTEETVLRVADLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P+  +++  I +LR K+ +       I T+ G GY L
Sbjct: 181 DFHFDPKTNVVETHISRLRNKV-DKPFATELIHTIRGAGYSL 221


>gi|196233280|ref|ZP_03132125.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196222585|gb|EDY17110.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 244

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 8/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+DD+ L   I   L    ++V     G +G+E      + A+ILDL L  + GFE
Sbjct: 11  RLLVIDDDRKLCRLIADYLDPLGYDVATVHTGPEGVERATAEAWHAVILDLMLPGLDGFE 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R      PV +L+      D++ GL+ GADDY+ K F+  EL+AR+RA+ RRS  
Sbjct: 71  VLKRIRRTS-DVPVLMLTARGDEADRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSVR 129

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ IV   L +N  ++T  +    + LT  E++++  L+  K    T++  
Sbjct: 130 TPATTDKETEAEIVIDRLRINPGSRTAALGDQALLLTPVEFELLLSLARAKGRVKTRDHL 189

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L  + +   E   + IDV I  LRKKL +     ++I TV   GY+L +   D
Sbjct: 190 LEEIREREYEVFDRSIDVHISALRKKLGDDPKTPHFIRTVRAAGYMLIDPDAD 242


>gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 220


>gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 120/226 (53%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++EDD  +A ++  +L    F+      G   +E    ++ D ++LDLGL D  GF
Sbjct: 1   MLLLIVEDDDHVASALAAVLGRHGFDTERARTGAQALEAL-SHDPDLVLLDLGLPDTDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R  +   P+ +++  +    ++ GL  GADDY+ KP++  EL+ARI A+ RRS 
Sbjct: 60  DLCRRMRQ-RYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRSA 118

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +        G +SV++D++   V G  + LT KE+ ++ +L+ +     ++   L+ 
Sbjct: 119 PRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILSE 178

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +   + ++V +  LR KL    G  + ++TV G GY LR 
Sbjct: 179 VWSTHWQGSQRTLEVHVASLRTKL----GLPDAVQTVRGVGYRLRP 220


>gi|119944747|ref|YP_942427.1| response regulator BaeR [Psychromonas ingrahamii 37]
 gi|119863351|gb|ABM02828.1| response regulator BaeR [Psychromonas ingrahamii 37]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ALA  +        F  ++ D G + I+  K Y+ D +ILDL L    G ++
Sbjct: 8   ILIVEDEPALASVLCEYFIQSGFQTHIIDNGLEVIDWVKNYQPDLLILDLMLPGRNGLDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV + +      D++ GL+ GADDYI KP++  E+V R++ I+RRS+  
Sbjct: 68  YRELRTFS-QVPVVMATARIDEIDRLLGLELGADDYICKPYSPREVVIRVKNILRRSKEG 126

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +L     L ++       +    I LT  E++++ + +       ++E  +  +Y   
Sbjct: 127 NGTLQGYAGLQIDEQKMMASLNQQTIILTPAEFRLLSVFNKHPEQVFSREQLMTQIYSDG 186

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + ID  I  LRKK+ + A     I++++G GY L
Sbjct: 187 RIVTDRTIDSHIKNLRKKMQDVAPESECIKSIYGIGYKL 225


>gi|311104194|ref|YP_003977047.1| transcriptional regulator OmpR 1 [Achromobacter xylosoxidans A8]
 gi|310758883|gb|ADP14332.1| transcriptional regulatory protein OmpR 1 [Achromobacter
           xylosoxidans A8]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 10  KLLVVDDDPALRQLLADYLNRHGYDTLLAPDATDLSSRITRYAPDLLVLDRMLPGGDGAD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 70  ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRKRG 129

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +  G    +   + +  +G  + LTG E  ++E L       L++E  L  
Sbjct: 130 PSALTKDAPVSFGPFVFDPSTRQLSREGTVVKLTGGEINLLEALVRNAGKPLSRERLLAL 189

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D    E   + ID+ I +LR+ +        +I+TVWG GY    
Sbjct: 190 ARDDDAGERNDRAIDIAILRLRRVIEEDPKQPRWIQTVWGIGYRFSP 236


>gi|92112801|ref|YP_572729.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91795891|gb|ABE58030.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 239

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IEDD+ LAH     L++  F V +   G   +E     + D +ILDL L    G  +
Sbjct: 14  VLIIEDDERLAHLTREYLEANEFRVDLEYDGARAVERILDEQPDIVILDLMLPGEDGLSI 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R    + P+ +L+  +   D+V GL+ GADDY+ KP     L+AR+RA++RR+   
Sbjct: 74  CRRVR-GHYAGPILMLTARTDDMDQVLGLEMGADDYVPKPVQPRVLLARMRALLRRADTL 132

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G+L ++   +   +   RI LT  E+ ++ LL+      LT+E   + L
Sbjct: 133 DAASGATRLTFGNLLIDSATREAWLDDERIDLTSAEFDLLWLLADNAGRVLTREEIFSQL 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + + + + IDV + ++R K+ +     + I+TV  +GY+   ++
Sbjct: 193 RGIKYDGQDRSIDVRVSRIRPKIGDDPNHPHRIKTVRSKGYLFVRDS 239


>gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 128/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  ++   L      V +   G     L +   FD ++LD+ L  + GF
Sbjct: 1   MRILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +L+  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL   +G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRRKL---SGSSVEIRTARGMGYQI 218


>gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
 gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family
           [Methylocystis sp. ATCC 49242]
          Length = 247

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ +LA  +   L++E + V   D G++          D +ILD  L  + G E
Sbjct: 19  RILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLE 78

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR  +     P+ +L+      ++VRGL  GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 79  ICRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELMARVRALLRRA 138

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R     S +  GD+ ++ D   V   G  IHL   EY+++E    +     T+   L+ +
Sbjct: 139 RPERVASKLRLGDIDLDRDTHRVRRSGREIHLGPTEYRLLEYFMEKPGRVFTRAQLLDSV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E + + +DV + +LRK L      K+ I TV G GY   E 
Sbjct: 199 WGMSAEIDERTVDVHVGRLRKAL-IRGREKDPIRTVRGAGYSFDET 243


>gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces
           scabiei 87.22]
 gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
           POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
          Length = 242

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 116/226 (51%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ A+  ++   L+   + V      ++ +   + +  + I+LD+ L D  G E
Sbjct: 18  RLLVVDDEPAILDTVGRFLRFIGYEVRTAATVKEALAEARDHLPELILLDIMLPDGDGIE 77

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR   +   V  L+   + +D V+ L +G DDY++KPF  +E+ ARI A++RR+R 
Sbjct: 78  VMRRLRADGLPHAVVFLTARDTRKDLVKALAAGGDDYVTKPFGLDEVAARIGAVLRRTRR 137

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  S++   DL ++    +V   G  I L+  E++++  L L     + +   L H++
Sbjct: 138 PEHESSVLRVADLELDPATHSVRRGGTAIGLSPTEFRLLRYLMLHSGRIVPRAQLLEHVW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +  ++  +I  LR+KL   A G   I T  G GY +RE  
Sbjct: 198 SYDFNGDDTVVATYISYLRRKL--DALGPPLIHTQRGIGYAIREPG 241


>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 240

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  + + +   L+     V     G+           D I+LDL L    G  +
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLTL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K   PV +L+  S   D+V GL+ GADDY++KPF+  EL+ARI+ I+RR+R  
Sbjct: 67  CRQLRA-KSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARSL 125

Query: 123 AQSLI-------VTGDLSVN-LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +              ++N L    +   G  + L+G EY+++ +     N  L ++  
Sbjct: 126 PVNFQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++       +P  + IDV + +LR++L +       I+TV G GYVL    +
Sbjct: 186 VDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVLSVPVE 237


>gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074]
 gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 232

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 16/236 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY---EFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F V     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAGALSAILSRHGFQVTHARSGEEALKALLPAGGPPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+EV   +R  + S PV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGYEVCGKIRA-RTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVAR 119

Query: 118 RSRG--------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           R++          A   +V G + V L  + V V G  + LT KE+ ++ LL  R     
Sbjct: 120 RNQPGDAEGAATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVF 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +E  ++ ++    E   + ++V +  LR KL         IETV G GY L +  
Sbjct: 180 RREQIISEVWRTSWEGTGRTLEVHVASLRSKLRR----PALIETVRGVGYRLVDPG 231


>gi|134279950|ref|ZP_01766662.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
 gi|134249150|gb|EBA49232.1| Transcriptional regulatory protein tctD [Burkholderia pseudomallei
           305]
          Length = 273

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  EVLSRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 249


>gi|327480541|gb|AEA83851.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           stutzeri DSM 4166]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 122/225 (54%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V  +  G DG+      + D ++LDLGL D+ G +V
Sbjct: 8   VLIIDDEPQIRKFLRISLASQGYRVLESTDGRDGLARAALEQPDLVVLDLGLPDMDGQDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--RSR 120
           L  LR +    PV +LS  SS  +KVR L +GA+DY++KPF  +E +AR+RA++R  +S 
Sbjct: 68  LGELR-SWTRVPVIVLSVRSSEAEKVRALDAGANDYVTKPFGIQEFLARVRALLRLPQST 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   ++ G L ++L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 TNSPGQVLCGALCIDLAFRRVSLGERMVSLTRKEYAVLAELARHAGRVVTQQHLLKIVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + V I  LR+KL +      +I T  G GY L  +A
Sbjct: 187 PSHAGDSHYLRVVIGHLRQKLGDDPAAPRFIVTEAGVGYRLISDA 231


>gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
 gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
          Length = 244

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/231 (32%), Positives = 125/231 (54%), Gaps = 7/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   +  +LK   + V   D G++ + L      D I+LDLGL DI G  +
Sbjct: 7   VLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQCPDIILLDLGLPDIDGSSI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           +R +R    STP+ ++S  S+ ++KV  L  GADDYI+KPF   EL+ARIR  +R S R 
Sbjct: 67  IREVRAWS-STPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSLRHSNRL 125

Query: 122 HAQSLIV-----TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + +S +       G + ++   + + + G  IHLT  EY+++  L+      +T    L+
Sbjct: 126 YTESSLYIRPYQCGSMLLDFSKRILTIDGEEIHLTPIEYKIVAYLAQNSGKVITYAAILS 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +++    + + KI+ V +  +R+KL        YI T  G GY ++E+  D
Sbjct: 186 NVWGPYADSDNKILRVNMANIRRKLEKDPAQPQYIYTEVGVGYRMKEDEFD 236


>gi|297539008|ref|YP_003674777.1| winged helix family two component transcriptional regulator
           [Methylotenera sp. 301]
 gi|297258355|gb|ADI30200.1| two component transcriptional regulator, winged helix family
           [Methylotenera sp. 301]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 111/220 (50%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  SI   L  EN+ V     G           +D I+LDLGL    G 
Sbjct: 1   MRLLLVEDDVMIGESINEALNGENYAVDWARDGRSAELALANGVYDLILLDLGLPKKQGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL   R      PV I++   S+ DKV GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  QVLSEYRQRGGMLPVLIITARDSMADKVGGLDAGADDYLVKPFDLDELFARVRALLRRHT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ +I  G +++N     V + G  + L+G+E+ ++  L        +       LY 
Sbjct: 121 GRAQPVITYGKVTLNPAIHEVHLDGQLLSLSGREFALLLSLLTPPGRVRSLAELEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E     ++V I +LRKKL        +I+ + G GY 
Sbjct: 181 WDHEVASNTLEVLIHRLRKKLGTN-----FIQNIRGMGYK 215


>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 107/232 (46%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   +   L+     V     G+           D I+LDL L    G  +
Sbjct: 7   ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPGDDGLTL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R LR  K   P+ +L+      D++ GL+ GADDY+ KPF+  EL+ARI+ I+RR+R  
Sbjct: 67  CRNLRA-KSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARSL 125

Query: 121 -----GHAQSLIVTGDLSVNLD-AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +     +++      V   G  + L+G EY+++ +     N  L ++  
Sbjct: 126 PRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVLNRDQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++       +P  + IDV + +LR++L +       I+TV G GYVL    +
Sbjct: 186 VDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVLSAPVE 237


>gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184]
 gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184]
          Length = 270

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V  TD G DG+       +DAI LD  L    G 
Sbjct: 47  MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGRDGMMRAMSASYDAITLDRMLPGADGL 106

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 107 AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 166

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 167 ASGVPQQTLLKVGVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 226

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+         I+TV G GY+L
Sbjct: 227 VWGYHFDPGTNLIDVHMGRLRKKIDPPGANP-MIQTVRGSGYML 269


>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
 gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D++AL      ML+ E ++V V   G+ G +L     +D +ILD  L +  G 
Sbjct: 1   MRILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R++R      PV  L+   +++D+V+GL +GADDY+ KPF  +EL+AR+RA++RRS 
Sbjct: 61  DLCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRRSP 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               S    +  GDL ++   +    Q  RI L+ KE Q++ +L       ++ +     
Sbjct: 121 RQETSEAPRLAGGDLELDTPNQLAYRQARRIELSEKETQLLAVLMQHPGQLVSHQELQAQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++   + P   ++   I  LR+KL  A G    I +V+G+GY  +
Sbjct: 181 VWGSANPPSSNVLAAQIRLLRRKLE-APGETPLIFSVYGKGYRFQ 224


>gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
 gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR++++EDD  +   +   L  E   V     G + +       +D +ILD     + G 
Sbjct: 1   MRLMVLEDDPEIGQWVYDGLTREGHVVDWLKDGREALAAGSINSYDVLILDRMTPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR AK++TPV  L+ M  ++D+V GL++G DDY++KPF   EL AR+ A+ RRS 
Sbjct: 61  SVLKALRAAKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSS 120

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             ++    + +   D+ ++L  +     G  + L GKE+ ++E L        T+ M L 
Sbjct: 121 FASEQTETTKLNVKDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++   +P   +++  I +LR K+     G   I TV G GYV+ +
Sbjct: 181 KVWNMNFDPTTSVVETHISRLRGKIEK-PFGDTVIRTVRGAGYVIED 226


>gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
 gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931]
          Length = 279

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 55  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMPGFDGL 114

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 115 ELLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 174

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N D + V   G  I LT  ++ ++  L       ++K   L+++
Sbjct: 175 VAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNV 234

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+    G +  I TV G GYV+R 
Sbjct: 235 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVIRP 277


>gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
 gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia
           hollisae CIP 101886]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/222 (40%), Positives = 133/222 (59%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V+      +G+ + K Y  D  I+DLGL D  G 
Sbjct: 1   MRILIVEDDPLLSHHLKTELSELGHQVHCAQTAYEGLFVAKEYPNDIAIVDLGLPDRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R +R A I  P+ IL+G ++ +DKV GL +GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIRDIRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  I  G ++++L AK V + G  + LT  EY ++E L       ++K+  L+ LY 
Sbjct: 121 GFVKPEIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +   I+V + +LRKKL+ A G +N I TV G+GY+  
Sbjct: 181 -DQEGDPNTIEVMMSRLRKKLTQA-GQENPISTVRGQGYIFE 220


>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 242

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +       V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 140 KQ--IQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 237


>gi|227549745|ref|ZP_03979794.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
 gi|227078180|gb|EEI16143.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 8/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+++LA  +  +L+ E F   V   G+  +        D ++LDL L  + G +V
Sbjct: 4   ILIVEDEESLADPLAYLLRKEGFQAIVAPDGQSALREFDSDSVDLVLLDLMLPGMSGTDV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R    + P+ +++   S  DKV GL+ GADDY++KP++  EL+ARIRA++RR    
Sbjct: 64  CKKIRAVS-AVPIIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGPEV 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++  G + +++   TV V G  + +  KE+ ++E L       LT+   +
Sbjct: 123 VDEEVEADERILEGGRVKMDVSRHTVFVDGEPVSMPLKEFDLLEYLMRNPGRVLTRGQLI 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      + K +DV + +LR K+  A      + TV G GY   
Sbjct: 183 ERIWGADYVGDTKTLDVHVKRLRTKIEVAPSRPTQLVTVRGLGYKFE 229


>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
 gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
           [Methylacidiphilum infernorum V4]
          Length = 258

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +   I L L S+ F       G + + + +    D I+LDL + +  G +
Sbjct: 33  KILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGLD 92

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + L+    +   P+ IL+  S   D++ GL+ GADDYI+KPF+  EL+ RI++I+RR 
Sbjct: 93  VCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRRR 152

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 A+ +     + ++   K    +  +I LT  E++++  L  R+    ++E  L 
Sbjct: 153 LEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLLK 212

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ID  I +LR KL  A+    Y+ TV G GY  ++ 
Sbjct: 213 EVWGYDKTVDTRTIDTHIRRLRDKLGRAS---QYLRTVRGIGYRFKKT 257


>gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI LIED+  +A  I+  L+   + V V   G  GIEL +   +D +ILD+ L  + G +
Sbjct: 3   RICLIEDEHKVAAFIKNGLEEHEYLVNVATDGARGIELIENNNYDLLILDIMLPVVSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +L+ + +++DKV GL++GADDY+ KPF+  EL+ARI A++RR   
Sbjct: 63  VCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRRQTM 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL ++   KT    G  I LT KEY ++EL    +   LT++     ++
Sbjct: 123 EKVDAEILKFDDLELDTSGKTATRAGKTIVLTAKEYALLELFMRNQGKILTRQYIAERVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +     IDV++  LR K+     GK  + T  G GYVL++
Sbjct: 183 GIGFDTGTNFIDVYMSFLRNKIEKGFDGK-LLHTAIGMGYVLKK 225


>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
 gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
           tcrA [Mycobacterium tuberculosis T17]
          Length = 237

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 1/214 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +   +   L  E   V     G   +      ++DA++LD+ L  I GFE
Sbjct: 24  RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR  ++ TPV +L+   ++ D++ GL  GADDY++KPFN +EL AR+RA+ RR   
Sbjct: 84  VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  GDL ++     V      I L+ KE+ ++E L  R     T+   L   +D 
Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
             E    I+DV+I  LR K+ +   G   +ET+ 
Sbjct: 204 AYEARSNIVDVYIRYLRDKI-DRPFGVTSLETIR 236


>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 236

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 108/228 (47%), Gaps = 8/228 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  +   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     +  I    L ++  ++ V    + + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKTIDANGLILDPVSQRVNFGNNILEMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY  
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEPY-GVDRFVQTVRGTGYRF 227


>gi|241894797|ref|ZP_04782093.1| response regulator [Weissella paramesenteroides ATCC 33313]
 gi|241872009|gb|EER75760.1| response regulator [Weissella paramesenteroides ATCC 33313]
          Length = 271

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 14/242 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           M++L+IED+ +++  + +  K E ++V     GE+G++L       +DA+ILDL L  + 
Sbjct: 30  MKLLMIEDNTSVSEMMGMFYKKEKWDVTNAYDGEEGLKLFNENAQTWDAVILDLNLPKVD 89

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +V   +R      P+ +L+   S  D+V G   GADDY++KPF+   L+ARI+AI RR
Sbjct: 90  GMQVAMKIREVSAEVPLIMLTARDSDSDQVLGFDVGADDYVTKPFSPITLIARIKAIHRR 149

Query: 119 SRGHAQSL---------IVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSLRKNTT 168
           +     S          + T    +N   +   +    I  LT KE+ ++ +LS ++   
Sbjct: 150 AMMQPVSHEEGVIDDFDVQTRTFKLNSRTREAYLNDVLIPDLTPKEFDLLRVLSKKQRQV 209

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +++  L  ++D     + + +D  + KLR+K+     G   I+TVWG GY   ++   E
Sbjct: 210 FSRDQLLQLVWDYEYFGDERTVDAHVKKLRQKIEKV--GPQVIQTVWGVGYKFDDSNVPE 267

Query: 229 TC 230
           T 
Sbjct: 268 TP 269


>gi|126650368|ref|ZP_01722596.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
 gi|126593018|gb|EAZ87000.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 12/232 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +A  +   L  E F+  +   G  G+     Y+ + ++LD  L D  G +
Sbjct: 5   KILIIEDDEPIADLLSYGLMMEGFHTRIETTGSSGLSAIAIYKPNLLLLDWMLPDCSGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + +     + P+ +++  S I DKV GL+ GADDYI+KPF+  E+VARIR I RR   
Sbjct: 65  ICKQV-TTTYNIPILMITAKSDITDKVIGLEYGADDYITKPFDLREVVARIRTIFRRLDQ 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +      I   ++ +  + + V      I LT KEY ++  L  +K    T+   
Sbjct: 124 TNSLEKQEKSQDIRFKNILILPEERLVIKDDINIELTPKEYDLLMTLIGQKGKIFTRSEL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+ ++      + + +D  I +LRKKL       + I TV+G GY   +  K
Sbjct: 184 LDLVWGYDFVGDTRTVDTHIQRLRKKLD----AGDIITTVFGIGYKFEKQVK 231


>gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
 gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
           1622]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 117/222 (52%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A+ +   L  E   V      ED ++      +DAIILD  L  + G 
Sbjct: 1   MRLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQAGEVAYDAIILDWALPGMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R   + TPV +L+   ++ ++V GL++GADDY+ KPF  EEL+AR+ A+ RRS 
Sbjct: 61  ALLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS    G + ++   + +      + LTG+E+ ++  L+ R     T+   L  ++ 
Sbjct: 121 GQTQSW-GGGAIHIDARRRMLTCGDREVALTGREFALLGELASRAGEVHTRSSLLAKVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    I+DV++  +R KL+        I+ V G G+ L 
Sbjct: 180 PSFDGPPNIVDVYVGYVRTKLTEVGAEGVTIQAVRGVGFRLV 221


>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
           CH34]
 gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
           with CreC [Cupriavidus metallidurans CH34]
          Length = 232

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 10/231 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   +L++ED+ A+A +I   L++E   V    LG + ++  +    D +ILD+GL DI
Sbjct: 1   MKQPAVLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPDI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV R++R      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+R I+R
Sbjct: 61  SGFEVCRSMRTFS-DVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILR 119

Query: 118 RSRGHAQSLIVT------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           R++G + S   +       D   + D   +  +G  + LT  EY+++ LL         +
Sbjct: 120 RAKGASDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFAR 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++ ++    +   + +D  +  LR KL   A   + I T  G GY L 
Sbjct: 180 SQLMDLVWHDSLDTVDRTVDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230


>gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L+S    V     G +         EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRALRSAGAAVDHVASGTEADAALMTNTEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    S PV IL+   S++++V+GL  GADDY++KPF+ +EL AR+RA++RR 
Sbjct: 61  LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L+ +   +   + G  + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIE---KGPIRIATVRGLGYCLEK 221


>gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 131/221 (59%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLTGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +  +  +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
 gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 225

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     + V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius
           sp. HTCC2601]
          Length = 222

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   + + L+   F+  + +   D         F+A++LDL L D  G 
Sbjct: 1   MRILIVEDDAVLGDGLSVGLRLSGFSPELVETCADARHAIAMEGFEAVVLDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR +    PV +L+    ++D+V GL +GADDY+ KPF   EL AR+RA+ RR++
Sbjct: 61  ELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRALTRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A++L+    L+++    +       I  + +EY ++  L  R  + L+K      LY 
Sbjct: 121 GRAENLLHWNGLALDTARMSGRRGPEEIAFSRREYTVLAALMERPGSILSKATLEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +++ E   ++V +  LR KL     G  +I+TV G GY L   A
Sbjct: 181 WQEDIESNTVEVHVHHLRAKL-----GSGFIQTVRGAGYRLAPEA 220


>gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii
           OhILAs]
 gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus oremlandii OhILAs]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + +  ML    ++V     G + +   + YEF  ++LDL L  + G E+
Sbjct: 7   ILIVEDDMDINNLLSKMLSKRGYHVRQAYSGTEALMCLEHYEFQLVLLDLMLPGMVGEEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R  K + P+ ++S   + + K+  L  GADD+I KPF+  E++AR+ A +RR    
Sbjct: 67  ICQIRKLK-NMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMVF 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+++   DL +N D   V ++G  I +T KE+ ++ELL        TK      
Sbjct: 126 SNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFEQ 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +   ++V I  LR KL+ A     YI TVWG G+ + E
Sbjct: 186 VWNDEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMNE 231


>gi|329667413|gb|AEB93361.1| two-component system response regulator [Lactobacillus johnsonii
           DPC 6026]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+++LA  I+  L+ E + V     G++G+E  +  +   I+LD  L    G  
Sbjct: 5   KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWMLPVYDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +   D    L  G DDY++KPF  EEL ARIR I+RR   
Sbjct: 65  VLRRIRKVS-DIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +    L ++L +     +G  I+LT KEY ++  L        +++  L+ 
Sbjct: 124 EKRRVVSSTLEFSVLKIDLASHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +   +DV+I  LR KL      +N I+TV G GY LR+   +E
Sbjct: 184 VWGYDFIGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDDNE 231


>gi|289549491|ref|YP_003470395.1| Response regulator SaeR (Staphylococcus exoprotein expression
           protein R) [Staphylococcus lugdunensis HKU09-01]
 gi|289179023|gb|ADC86268.1| Response regulator SaeR (Staphylococcus exoprotein expression
           protein R) [Staphylococcus lugdunensis HKU09-01]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/221 (27%), Positives = 111/221 (50%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +I+D+  +        + E + V     G++ ++L +  + D  ILD+ + +  G+ 
Sbjct: 3   RIAIIDDEPDIRDICRTYFEFEGYEVLTASNGQEALDLLE-QDVDLFILDIMMPEKDGYA 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ ++  ++  P   L+  ++  D + GL  GADDY+ KPF+  ELV R + I+ R+  
Sbjct: 62  VIKEMKARQLDIPYIYLTAKTTESDTIYGLMLGADDYVKKPFSPRELVIRAKNILSRTVK 121

Query: 122 HAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           H+ +  +  G L+++   KT  +    I L  KE+ ++  L+  +N  L+K   L  ++ 
Sbjct: 122 HSSAQTLSFGALTLDNLTKTATINNETITLRIKEFDLLWYLATHENVALSKTDLLEQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++  ++V I +LR KL         I TVWG GY  
Sbjct: 182 YDYYEDMNTLNVHIHRLRDKLEQHHYKDYIISTVWGLGYKF 222


>gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1]
 gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family
           [Eggerthella lenta DSM 2243]
 gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella
           sp. 1_3_56FAA]
 gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +       LK   F         +    CK    + ++LD+ L +I G E+
Sbjct: 2   IYYVEDDTNIRDLTVYALKQAGFEAAGFPAAGEFFAACKERLPELVLLDIMLPEIDGLEI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR    +   PV +L+   +  D V GL +GADDY++KPF   ELV+R+ A++RR+ 
Sbjct: 62  LHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALMRRAS 121

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +  G + + + A TV+V G  I LT KE+ ++  L   +   L++   L  
Sbjct: 122 APPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQLLED 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKN-YIETVWGRGYVLRENA 225
           ++      E + +DV +  LR+KL+ A  G +  + TV G GY ++ ++
Sbjct: 182 VWGMTYVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCIKPSS 230


>gi|206563842|ref|YP_002234605.1| DNA-binding response regulator CreB [Burkholderia cenocepacia
           J2315]
 gi|198039882|emb|CAR55857.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 237

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 13/233 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++A+A +I   L ++        LG+  ++  +    D ++LD+GL D+ GFEV
Sbjct: 6   ILIVEDEQAIADTIVYALGTDGMQTVHCTLGQAALDRLRGTRVDLVVLDVGLPDLSGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+R I+RR    
Sbjct: 66  CRRLRTF-TDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRFHRT 124

Query: 123 AQSLIVTG------------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           A                     +++ D   V   GH + LT  E+ ++ LL        +
Sbjct: 125 AAPEPTPATAPVDAPAPVASGFTLDTDGARVSWLGHALDLTRYEFGLLALLVRHPGRIYS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +E  ++ ++    +   + +D  I  LR KL      ++ I T  G GY L+ 
Sbjct: 185 REQLMDLVWHEALDSADRTVDTHIKTLRAKLRAIDPERDPIRTHRGMGYSLQP 237


>gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037]
 gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
 gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037]
          Length = 232

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWVLASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++L+         I+TVWG GY + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226


>gi|94499218|ref|ZP_01305756.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oceanobacter sp. RED65]
 gi|94428850|gb|EAT13822.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Oceanobacter sp. RED65]
          Length = 243

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 13/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+++EDD+ L+      L S    V V   G   ++  K  + D +ILDL L    G  V
Sbjct: 10  IMIVEDDERLSDLTRDYLVSNGMQVSVEADGARAVDRIKDEQPDLVILDLMLPGEDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+      D+V GL+ GADDY++KP     L+ARIRA++RR + +
Sbjct: 70  CRLVRP-SYKGPILMLTARDDDLDQVLGLEMGADDYLTKPVRPRVLLARIRALLRRLKDN 128

Query: 123 A------------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q+ +   +L V+   +   +    I LT  E+ ++ LLS      L+
Sbjct: 129 PSVAGQNVDGEESQTRVTFANLVVDNSMREAWLNDDPIELTSAEFDLLWLLSSNAGRVLS 188

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E     L     + + + IDV + ++R K+ +       I+TV  +GY+  + 
Sbjct: 189 REEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVNPKRIKTVRSKGYLFVKE 242


>gi|330960618|gb|EGH60878.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 245

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L++   +V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDQRLAELTSDYLQNNGLSVAIEGNGARAAARIIDEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R++R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI+A++RRS  
Sbjct: 67  ICRSVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGIGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
 gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
           SM-A87]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +   L +E + V   D G + +++ K      IILD+ +  + G 
Sbjct: 6   IRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMPGMDGI 65

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       ++ G  +GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 119 SRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R      +++  G++ +N D   V      + L  KE++++ LL+ +      +E  L+
Sbjct: 126 FRDEETGSNIVKVGEIVINRDEYKVVKNKEEMILPRKEFELLSLLASKPGKVFKREDILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I KLR+K+ + +      +TV G GY   
Sbjct: 186 KVWGNEVVVGGRTIDVHIRKLREKIGDDSF-----KTVKGVGYKFV 226


>gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 134/225 (59%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ LA  IE  L+ E+  V V   G+ G+++     +D  ++D  L +  G 
Sbjct: 1   MRVLLIEDDRKLARLIERALRDEHHQVDVAYEGDSGLDMALHGMYDVAVIDWMLPERDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            + RA+R AK++T + +L+  S IED+V GL SGADDY+SKPF  EEL+AR+RA+ RR +
Sbjct: 61  SICRAIRAAKLTTSLLLLTARSQIEDRVAGLDSGADDYLSKPFAFEELLARVRALGRRFN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   + +G++ ++L A T      ++ LT  E+ ++E L    N  L+++  L++++
Sbjct: 121 SNLSSEELRSGEIVLDLRAHTARRANQQLDLTATEWNLLECLIRNSNQALSRQQLLDYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +  ++DV+I  LR+KL      ++ I+TV G GY    +
Sbjct: 181 SYERDVQPSMVDVYISYLRRKLEQ-PTKRDPIQTVRGVGYRWVSD 224


>gi|269794678|ref|YP_003314133.1| CheY-like receiver domain/winged-helix DNA-binding
           domain-containing response regulator [Sanguibacter
           keddieii DSM 10542]
 gi|269096863|gb|ACZ21299.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Sanguibacter keddieii DSM 10542]
          Length = 235

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 113/227 (49%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD+  A      L  E +   V   G   +E  +    D ++LD+ L ++ GF V
Sbjct: 4   ILIAEDDELQAELARRYLTREGYQATVVGDGRSALEAVRGSAVDLLVLDVMLPEMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            RALR A   TP+ +L+  S  +D + GL+ GADDY+SKP++  E+VAR RA++RRSR  
Sbjct: 64  CRALRAAGDETPILMLTARSEEDDLLVGLELGADDYLSKPYSPREMVARARALLRRSRTV 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +  G L V+       V G  I LT  E Q++ LL+      L++   L HL+   
Sbjct: 124 DDGPVTVGPLVVDPRRHEASVGGTPIDLTRAEMQLLTLLAEHAGLVLSRPQLLRHLHGSD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +    + ID  +  LR K+     G   + TV+G GY L      E 
Sbjct: 184 EYTTERTIDTHMKNLRSKVDAVFDGPELLRTVYGVGYKLVAPTATEP 230


>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
 gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
          Length = 225

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVDT 223


>gi|330973419|gb|EGH73485.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAASGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I   LK           G +G+       +DA +LDLGL +I G 
Sbjct: 1   MRILLIEDDPHIGDGIAAGLKKLGMAADWFSDGLEGLAAATAAPYDAAVLDLGLPNIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R + ++ PV IL+   ++ D++ GL  GADDY+ KPF  EEL AR+  +VRR R
Sbjct: 61  DILQRWRESGVNLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G L+++  A+T  + G  + LT +E++++E+L       +++    + LY 
Sbjct: 121 GRADSGLKFGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              E +   ++V I  LRKK+     G + I+T  G GY L +  
Sbjct: 181 WDQEVDSNAVEVHIHHLRKKI-----GASVIKTKRGLGYQLGDEP 220


>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
 gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
           7335]
          Length = 243

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 13/231 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPGF 60
           IL+ EDD+    ++   L++ ++ V     G+  ++  +      D ++LD+ +  + GF
Sbjct: 10  ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + LR    + P+ + + + S  D+V GL+ GA+DYI KPF+ +EL+ARIR+I+RR+ 
Sbjct: 70  QVCQRLRATS-NVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAA 128

Query: 121 GHAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +        S I  G   ++   +   ++GH + LT  E+++IELL+ R     ++ 
Sbjct: 129 RRQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRG 188

Query: 173 MFLNHLYDGR--DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  L+        + K +DV I +LR KL+       YI T+ GRGY+ 
Sbjct: 189 DILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239


>gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D]
 gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12J]
 gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family
           [Ralstonia pickettii 12D]
          Length = 219

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  LA  +   L++ ++       G    +  +    + ++LDL L    G E+
Sbjct: 2   ILIIEDEPKLAALMTDYLRAAHYETEWLADGTHAAQRIRETAPELVLLDLMLPGKDGLEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDY+ KPF+  ELVARI+ I+RR +  
Sbjct: 62  CREVRAFS-EVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARIKTILRRVQRG 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +    L ++  A    ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 121 G--GVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDDH 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  I  LR+K+   + G   I +V+G GY L
Sbjct: 179 RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRL 217


>gi|66045291|ref|YP_235132.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63255998|gb|AAY37094.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
 gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC
           29909]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G+ GI      ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLGGEGFNAELVLTGKAGIAAALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDVSSADDSIISHGDLTLNPSTRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+  AG K  IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALAGNKLNIETVRSIGYRIR 227


>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
 gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
           E681]
          Length = 228

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/219 (29%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+L +D+  +   +EL L +E + V   + G   ++L + +     +LD+ + ++ GFE
Sbjct: 8   KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V ++L+  + +  V +L+    ++D+V+GL+ GADDY+ KPF+  EL+ARI A +R    
Sbjct: 68  VCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQFP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +V G   V+   K +  Q   + L+  EY++++ L L     L+K   L+ ++  
Sbjct: 128 DLLGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               E  I++V+I  LR+KL +       I T+ G GY 
Sbjct: 188 DFGGEDNIVEVYIRSLREKLKD--KEHRVIRTLRGVGYR 224


>gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 225

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 122/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL + +     IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKL-DGSVAFKPIETVRGMGYLFNE 222


>gi|302542071|ref|ZP_07294413.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302459689|gb|EFL22782.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 238

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/242 (30%), Positives = 120/242 (49%), Gaps = 22/242 (9%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC---KFYEFDAIILDLGLTDI 57
           MR+LL+EDD  +A ++  +L    F++     GE+ ++         F  ++LDLGL D 
Sbjct: 1   MRLLLVEDDNHVAAALTAVLSRHGFDITHARSGEEALKALLPGAGAPFGVVLLDLGLPDQ 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            GFEV   +R    +TPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A+ R
Sbjct: 61  DGFEVCGRIRKL-TATPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTMELLARIHAVSR 119

Query: 118 RSRGH--------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
           R+                  Q  +  G +++ L  + V V G  + LT KE+ ++ LL+ 
Sbjct: 120 RTLPSDSGGGAGTEDSGEGPQPPLRLGPVTIELPTRQVSVDGATVSLTRKEFDLLALLAQ 179

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R      +E  ++ ++    E   + ++V I  LR KL         IETV G GY L  
Sbjct: 180 RPGVVFRREQIISEVWRTSWEGTGRTLEVHIASLRSKL----HMPALIETVRGVGYRLVA 235

Query: 224 NA 225
            A
Sbjct: 236 PA 237


>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD  + +++   L    + V     G +         +  +ILD+ L  + G 
Sbjct: 3   IRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMNGH 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R  K  TP+ +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 63  ELLREFRA-KNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSG 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  I  G L++  +  TV   G  + LT KE++++ LL   K  TLT E+ L+ ++ 
Sbjct: 122 ALAKE-IRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   +   I  LR KL         I+T+ G GY L E+
Sbjct: 181 YDFEGDGSTVHTHIKNLRAKLPEN-----IIKTIRGVGYRLEES 219


>gi|24375906|ref|NP_719949.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
 gi|24350882|gb|AAN57393.1|AE015875_9 DNA-binding response regulator [Shewanella oneidensis MR-1]
          Length = 225

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+     G  G+      ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + GH + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 STPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|298251741|ref|ZP_06975544.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297546333|gb|EFH80201.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DDK     I L LK+E+F       G + + L +    D IILD  L  + G +
Sbjct: 4   KILVVDDDKKTVDLIRLSLKNEHFETLEAYDGIEALALTRSEAPDLIILDWMLPHVGGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R+   + PV +L+  ++ +DK+ GL  G DDY++KPF+  ELVAR+R ++RR+  
Sbjct: 64  LCRIVRLES-TIPVIMLTAKATEDDKLLGLNLGVDDYLTKPFSLRELVARVRVVLRRTYR 122

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  + +   DL +N+    V + G  I LT KE++++E          ++E  +  + 
Sbjct: 123 SEERPATLHFSDLVINVQRHEVWLSGKAIRLTPKEFKLLETFVRNPGRIFSREELVERVC 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   + ID  +  LRKK+   +   +YI+TV G GY LR
Sbjct: 183 GSNYDGFDRAIDFHLGNLRKKIDTHSEQPSYIQTVHGVGYTLR 225


>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
 gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 122/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G  G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKINGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLILDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|56460761|ref|YP_156042.1| response regulator [Idiomarina loihiensis L2TR]
 gi|56179771|gb|AAV82493.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis
           L2TR]
          Length = 237

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   +   L +E +        E GI+         +ILDLGL D  G++
Sbjct: 11  RILVIDDEPQIRRFMRASLTAEGYTYLEAATAEQGIKQITSQNPHLVILDLGLPDADGYQ 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R LR      PV +L+       KV+ L+ GA+DY++KPF   EL+ARI  ++R    
Sbjct: 71  VMRQLREWS-QVPVLVLTARDDELQKVKLLEGGANDYLTKPFGIRELMARIHVLLRDLSI 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  A++ +  G+L ++ +   V +Q   ++L+ KEY +++ L       +T++  L  +
Sbjct: 130 EQPTAEAQLRFGELLIDREQHKVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKI 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    + +   + +F+ ++RKKL +      YIET  G GY  
Sbjct: 190 WGQTHQEDTHYLRIFVSQVRKKLKDDPAQPKYIETEPGVGYRF 232


>gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|71908759|ref|YP_286346.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71848380|gb|AAZ47876.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 234

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 112/229 (48%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ LA      L   +  V +   G+         + D +ILD+ L    GFE
Sbjct: 4   RILLVEDDERLAELTAEYLTKNDLEVSIEPRGDTAEARILAEQPDLVILDVMLPGKDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V RA+R       + +L+      D++ GL+ GADDYI+KP     L+ARI+A++RR   
Sbjct: 64  VCRAVRSQFRGV-ILMLTARDEDFDQILGLEMGADDYIAKPVQPRVLLARIKALLRRLPV 122

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      ++ G   ++   +T  + G  I LT  E+ ++ LL+      L+++  L
Sbjct: 123 AGEGGSGESESMLFGQFKISQATRTAALAGQTIDLTTAEFDLLWLLASHAGNVLSRDDLL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             L     +   + ID  I +LRKKL++       I+TV G+GY+  ++
Sbjct: 183 QELRGIGFDGLDRSIDARISRLRKKLNDDPENPTRIKTVRGKGYLFSKH 231


>gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661]
 gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661]
          Length = 232

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F+V V   GE  + L      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLID-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+      +++E 
Sbjct: 121 SEQQQQHDNSSPTLEVDHLRLNPGRQEASFDSLTLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL +   G  + +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWFKTLRGRGYLMV 229


>gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 228

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 117/225 (52%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDDK +   I + LK     V       + + L     F+ I+LD+ L D  G E
Sbjct: 3   RILIVEDDKLINDGISIALKKGGHMVLSGFSYNEALCLFLNNSFELILLDINLPDRSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K   P+  ++   + +D V G   G DDYI+KPF+ E +  RI A++RR+  
Sbjct: 63  LCNEIR-KKSDIPIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTTP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++   +G++S+N D   V  +   I LT  EY+++ LL+      LT+++ L  L+D 
Sbjct: 122 EDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWDT 181

Query: 182 RD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +   +   + V + +LR+K+ +      YI+TV+G GY   E +
Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGYTWGEES 226


>gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855]
 gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++ +  ++D ++LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYDLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q  +    L V++  K V + G  I LT KE++++ LL   K    ++E  L
Sbjct: 124 SPTQGKEVQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 AKVWQEEVYVLDRTIDVNITRLRKKIGEYG---KCIVTRLGYGYCFE 227


>gi|296116946|ref|ZP_06835548.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976512|gb|EFG83288.1| two component response regulator PhoB [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 261

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/243 (27%), Positives = 118/243 (48%), Gaps = 15/243 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDD+AL+  +   L++  + V     G D +E    ++ D ++LD  L  + G +
Sbjct: 20  KILVAEDDEALSVLVTYNLEAAGYEVRAVADGLDALEQVGSWQPDLLVLDWMLPGLSGVD 79

Query: 62  VLRALRVAK---ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           + R LR         PV +L+  ++  D V  L +GADDY++KP   E L AR+RA++RR
Sbjct: 80  LCRRLRARGGAMCDMPVLMLTARTAESDSVHALDTGADDYLTKPCGMEALNARVRALLRR 139

Query: 119 S-----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           S           +  A +++   D+ ++  +  V   G  +     EY+++E      N 
Sbjct: 140 SVLNAGAGGVQAQADATAVLRFVDVVLDPVSHRVTRAGRVLAPGPTEYRLLEFFMRNPNR 199

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             ++E  L  +++     E + +DV I +LR+ + N     + I TV   GY L + + D
Sbjct: 200 VFSREDLLRSVWERGVHVESRTVDVHIRRLRR-ILNEGDLPDLIRTVRASGYALDDMSGD 258

Query: 228 ETC 230
            T 
Sbjct: 259 VTP 261


>gi|269215796|ref|ZP_06159650.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
 gi|269130746|gb|EEZ61822.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
          Length = 242

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 10/236 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L++D+ ++   +E ++  E+        G D ++       D IILD+ +  + GF  
Sbjct: 4   IMLVDDEASIRKLVEDLVTDEDLEFRYEANGADALKSVAAIPPDLIILDVMMPKMDGFST 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R    + P+  LS  S I DK  G  +G DDY++KPF+  EL+  + A +RR+   
Sbjct: 64  CRKIREMGATMPIVFLSAKSDIVDKCAGFAAGGDDYMTKPFDARELMLHVDAHLRRAAMI 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                       S+I  G LS++ +       G  I LT KE+ +I  L        +K 
Sbjct: 124 KSAVESEGKSKNSVITVGRLSLDNEQHRFTKDGSHIKLTRKEFSIIRTLMEHPGVVFSKN 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 +      E   I VF+ KLR K+ +       IETVWG GY L  +A +E
Sbjct: 184 QLTEAGWGKEFVGETTTITVFMKKLRSKVEDDPTDPRIIETVWGVGYRLDADACEE 239


>gi|226229248|ref|YP_002763354.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226092439|dbj|BAH40884.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  LA  I   L+ E++ V   +LG+D I       +DAI+LD+ L DI GF
Sbjct: 1   MRLLVVEDDPKLARLIARGLREESYAVDTCELGKDAIAQAAVNSYDAIVLDVMLPDINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V++ LR   I TPV +L+   ++ D++ GL SGADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  TVVQTLRTRDIRTPVLMLTSRDAVADRIVGLDSGADDYLVKPFDFGELLARLRALLRRPE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L +  V   G  I LT KEY ++ELL+      L++   ++H++D
Sbjct: 121 SLQAMQVRVADLEIDLQSHAVSRGGTPISLTAKEYALLELLARNVGRVLSRSDIVSHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    ++V++ +LR K+         I T  G GY+L +
Sbjct: 181 DNHDPFTNAVEVYVNRLRGKIDRDGHAP-LIHTRRGAGYILTD 222


>gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 220

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 229

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
 gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 60/226 (26%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L SE ++V   D G D +++ K  +   IILD+ + ++ G 
Sbjct: 6   IQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       ++ G  +GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 119 SRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            R    + +++  GD+++N +   +   G+ + L  KE++++ LL+ +      +E  L+
Sbjct: 126 YREEDTSSNIVKLGDITINREEYKIVQNGNEMALPRKEFELLSLLASKPGKVFKREDILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++        + IDV I KLR+K+ +       I+T+ G GY   
Sbjct: 186 NVWGNDIVVGGRTIDVHIRKLREKIGDDK-----IKTIKGVGYKFV 226


>gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 223

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 1   MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 61  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + +  +E+ +++ L       +++E     L
Sbjct: 121 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 181 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 223


>gi|319950703|ref|ZP_08024601.1| response regulator receiver [Dietzia cinnamea P4]
 gi|319435619|gb|EFV90841.1| response regulator receiver [Dietzia cinnamea P4]
          Length = 217

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 9/211 (4%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L+ + F V +T  G+D ++L +    D I+LDLGL  + G EV R +R       + +L
Sbjct: 4   YLERDGFVVTITGDGQDAVDLARRIAPDVIVLDLGLPGLDGIEVCRQVRT-HSDAYIVML 62

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--------HAQSLIVTG 130
           +  +   D + GL  GADDY++KPF+  EL ARI+A++RR R             +   G
Sbjct: 63  TARTEEVDTLIGLSVGADDYMTKPFSPRELSARIQAMMRRPRQATTGGGGKTPSHVHSIG 122

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            L++N   + V V G  I LT  E+ ++  L+      +T+   +  ++      +  ++
Sbjct: 123 QLTINTAGREVTVGGSAIGLTRTEFDILATLARDPGIVVTRAQLMAAVWGPNWVGDDHLV 182

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DV I  LR+KL + A    Y+ TV G GY +
Sbjct: 183 DVHIGHLRRKLGDDAAVGRYVRTVRGVGYRM 213


>gi|291086887|ref|ZP_06344776.2| aspartate carbamoyltransferase [Clostridium sp. M62/1]
 gi|291077294|gb|EFE14658.1| aspartate carbamoyltransferase [Clostridium sp. M62/1]
          Length = 257

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GF 60
           +IL+ +DD A+   +  +++   F       G + +   +  EF  I+LD+ +     GF
Sbjct: 29  KILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGNDDGF 88

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             ++ LR +  +TP+ +LSG S   D + GL  GADDY+SKPFN   L A+I+A+VRRS 
Sbjct: 89  HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 148

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  A  ++  G    N         G  I L+ +E+ ++ L         +KE     
Sbjct: 149 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 208

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I V+I  LR K+ ++     +I+TVWG GY  
Sbjct: 209 VWN-NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 251


>gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 224

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD  +   +   L+ E   V+    G + +  + +    D ++LD GL D+ G 
Sbjct: 3   RILLVEDDPQVGELVRRYLEKEGMEVFWARSGGEALGRVFEGERPDLVVLDRGLPDMEGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV +L+G +  + +V GL  GADDY+ KPF+ +EL+ARI+A++RR+ 
Sbjct: 63  EVLKELRELDPLLPVLLLTGRADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRAG 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +     G L ++L+A+   ++G  + L+  E  ++  L        T+E  L  ++ 
Sbjct: 123 K--EGRRRFGPLELDLEARQAFLEGEPLKLSPTEMNLLLTLVQAPGRVYTREELLERVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                  +++D +I  LRKKL + A    +IETV G GY  
Sbjct: 181 PDFPGSERVVDAYIRLLRKKLKDDAQAPRFIETVVGMGYRF 221


>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
 gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
          Length = 227

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 130/222 (58%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+  LA ++++ML+ + ++V +   GED +   +   +D I+LD+ +    G 
Sbjct: 1   MRILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR   I TPV +L+  S +EDKV GL+ GADDY++KPF   EL+AR+++++RR  
Sbjct: 61  EVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRPN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  G++ +N D  T+     ++ L  KE+Q++E   +  N  L+ ++ +  ++ 
Sbjct: 121 VFVASVMTLGNVELNRDTFTMMTSKGQVLLNNKEFQLMEYFMMNSNQVLSTDLIMEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E+ ++ V I  LRKKL+        I++  G GY L 
Sbjct: 181 LDSEAEINVVWVNISSLRKKLATIEAD-VTIKSARGLGYQLV 221


>gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC
           796-83]
          Length = 219

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   +    + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
 gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
           [Solobacterium moorei F0204]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K L   ++  L    + V     G DG+ L    + D I+LD+ + ++ GFE
Sbjct: 3   KILIIDDEKELVALLQDELTERGYQVLAAHNGADGVTL-SKKQPDLIVLDIMMPEMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  LS   +  DK+R L  G DDYISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRKIRDE-VLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +   +LS++L   +V++ G  I L+ +E  ++ELL+L      ++E  
Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++    + +   +   I K+RKK +  +    YI TVWG GY  
Sbjct: 181 YERVWGYDSDGDSYTVVEHIRKIRKKFALVSADTEYISTVWGIGYKW 227


>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 230

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+K L   ++  L++    V     G DG+ L K  + + I+LD+ + ++ GFE
Sbjct: 3   KILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAKK-QPELIVLDIMMPEMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  LS   +  DK+R L  G DDYISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRKIRDE-LLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120

Query: 122 HA-------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    ++ +   +L ++L   +V++ G  I L+ +EY ++ELL+L      ++E  
Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++    E +   +   I K+RKK S  +    YI TVWG GY  
Sbjct: 181 YERVWGYDLEGDSYTVVEHIRKIRKKFSEVSPDTEYISTVWGIGYKW 227


>gi|237807962|ref|YP_002892402.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237500223|gb|ACQ92816.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 231

 Score =  249 bits (638), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 116/223 (52%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +   +   L S+ F V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 8   ILIIEDEQQIRRYLGAALLSDGFKVFEADTLQRGLIEAATRKPDLVILDLGLPDGDGNQF 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R      P+ ILS  S   DKV+ L +GADDY+ KPF   EL+AR+RA +RR    
Sbjct: 68  IEEIRQWS-QIPIIILSARSDERDKVKALNNGADDYLVKPFGIAELLARVRANLRRRNAD 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R +   +I  G++ ++   + V   G+ IHLT  EY+++  L  +     T    LN ++
Sbjct: 127 RENETPIICFGNIKIDRVNRQVFRNGNEIHLTKLEYRLLMTLLSQPGRVFTHRQLLNTVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + + I +++  LR+KL   A    Y++T  G GY L 
Sbjct: 187 GAAYIEQTQYIRIYMGHLRQKLEQDATRPRYLQTETGIGYRLV 229


>gi|254523237|ref|ZP_05135292.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
 gi|219720828|gb|EED39353.1| DNA-binding response regulator [Stenotrophomonas sp. SKA14]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 124/225 (55%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD   A  I   L S    V     G +G+      ++D I LD  L  + G  
Sbjct: 3   RVLTIEDDAITAQEIVAELSSHGLQVDWVADGREGLVRAASGDYDVITLDRMLPGLDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ++TPV +LS +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR + 
Sbjct: 63  IVTTLRRIGVATPVLMLSALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRRQQ 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  ++++  GDL ++L A+T    G  + L   E++++E L       LT+ M    ++
Sbjct: 123 PASNETVLRVGDLQLDLLARTAHRGGRSLSLLPTEFKLLEYLMRNAGQVLTRMMLFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P   +IDV I +LR+KL + A   + I TV G GYVL E 
Sbjct: 183 GYHFDPGTNLIDVHIGRLRRKL-DQADAPSLIRTVRGSGYVLSET 226


>gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 245

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/235 (33%), Positives = 129/235 (54%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   +   L+ + F V+    G       +   +D ++LD+ +    GF 
Sbjct: 6   KILLVDDDPRLRTMLVRYLEGQGFIVHAAASGVQMDRQLEREYYDLLLLDVLMPGEDGFS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + LRV +   P+ +L+    + D+V+GL  GADDY+SKPF  +ELVARIRA++RRS+ 
Sbjct: 66  ICQRLRVQEPHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVLRRSQD 125

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              S      I+ G   + LD++++     +I LT  E+ ++  L+      L+++  L 
Sbjct: 126 LRSSDPTPGAIIFGPFRLALDSRSLWRNDEKISLTDSEFSILHALASHPWQPLSRDRLLA 185

Query: 177 HLYDGRDE-PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             +   D  P  + IDVFI +LR+ + +  G  +YI+TVWGRGYVL  +  D T 
Sbjct: 186 MTHGNEDATPSSRGIDVFISRLRRLVEDDPGEPHYIQTVWGRGYVLVPDGGDATP 240


>gi|168178082|ref|ZP_02612746.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|170755464|ref|YP_001780337.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|226947966|ref|YP_002803057.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|169120676|gb|ACA44512.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
 gi|182671281|gb|EDT83255.1| transcriptional regulatory component of sensory transduction system
           [Clostridium botulinum NCTC 2916]
 gi|226843975|gb|ACO86641.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I  +EDD +L + +   +K + + + V     +   L K  ++D +ILD+ L D  G
Sbjct: 1   MKHIFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ + +R      P+  L+      D + GL  G DDYI+KPF     ++RI A++RRS
Sbjct: 61  YDLCKKIRKTS-KVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRS 119

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + + +  ++V L    V   G ++ LT  EY+++ +     +  L+ E  L+ 
Sbjct: 120 NNFNQADTELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCMFMENPDIVLSPEQILSR 179

Query: 178 LYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+D   +  +   + V+I +LR K+ +  G    I TV   GY  
Sbjct: 180 LWDCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYKW 224


>gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
 gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. BL107]
          Length = 259

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 10/232 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD+ +   +   L+   F+V   D G  G  L   Y  D I+LDL L  + 
Sbjct: 1   MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYIPDLILLDLMLPKVD 60

Query: 59  GFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           G  + + LR  + +   P+ +L+ +   +DKV G  SGADDY++KPF+ EEL  RI+A++
Sbjct: 61  GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RRS        +   ++  G L++  +          + LT  E++++  L  R   T+ 
Sbjct: 121 RRSDRAPLGASNQNEILSYGPLTLVPERFEAIWFDSPVRLTHLEFELLHCLLQRHGQTVA 180

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + L  ++    + +++ I V +  LR KL        +I+TV+  GY L 
Sbjct: 181 PSLILKEVWGYEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYRAGYCLE 232


>gi|307330553|ref|ZP_07609694.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306883802|gb|EFN14847.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q     T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D
Sbjct: 123 ETQQQQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TTWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 226


>gi|255527239|ref|ZP_05394121.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296188327|ref|ZP_06856719.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509063|gb|EET85421.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296047453|gb|EFG86895.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 130/228 (57%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+I+D+K++ + I++ LK E + + V+  G +GIE  K  + D +ILD+ L DI G 
Sbjct: 1   MKILVIDDEKSILNLIKMNLKLEGYEIIVSMNGIEGIEKFKKEKPDLVILDIMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++  +      PV +++  S I DK+ GLQ GADDYI+KPFN  EL+ RI+AI +R  
Sbjct: 61  EVIQKFQEVNNDIPVIMVTAKSQINDKLLGLQLGADDYITKPFNSTELILRIKAITKRIT 120

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H  + I  G + V  + + V V G  +++T KE+  + L+    N   T++  
Sbjct: 121 KKDREEVHKNNEINLGAIKVLKNERKVLVDGKEVNMTYKEFNTLLLMIENHNKVFTRDEL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +D+ I +LRKKLS  +     ++T++G GY L 
Sbjct: 181 LEKVWGYEYEGNSRAVDILIQRLRKKLSPYSQS---VKTIYGVGYKLE 225


>gi|331271140|ref|YP_004385849.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329127635|gb|AEB77577.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 125/231 (54%), Gaps = 8/231 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+ ++   +++ L+ E   + +     + + +      D IILD  L DI GF
Sbjct: 1   MKILVVDDEISILKLLKMTLQLEGHEILLAKDAIEALNIIAKNYPDIIILDAMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++  ++  K   P+ IL+  S + DK+ GLQ GADDYI+KPFN  EL+ RI  I +R  
Sbjct: 61  NLIGKIKRIK-DIPIIILTAKSDMNDKLLGLQLGADDYITKPFNSRELILRINVIKKRIL 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +I  G+L++  + K V V+   + LT KE++++  L        T++  L 
Sbjct: 120 KSKTNEDKKVIKVGELTLIPNEKKVLVKDESVTLTYKEFKVLNYLCENPGRVFTRDELLT 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++    E   + +++ I ++RKKL      +NYI+T++G GY L  N +D
Sbjct: 180 KVWWYDFEGTTRAVNILIQRIRKKLGP---CQNYIKTIYGLGYKLDVNEED 227


>gi|188990240|ref|YP_001902250.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732000|emb|CAP50188.1| two-component system response regulator [Xanthomonas campestris pv.
           campestris]
          Length = 290

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 58  MRLLLVEDNADLADAIVRRMRRSGHAVDWQQDGLAAASVLRYQSFDLVVLDIGLPKLDGL 117

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    +TPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 118 RVLAGMRERGDTTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 177

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A TV + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 178 GQASEVVQLGAFVFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNGLFG 237

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
             D+     I++++ +LR+KL +A      I TV G GY L E       E
Sbjct: 238 FDDDAGPNAIELYVGRLRRKLIDA---PLRIVTVRGAGYKLEEADPQAVTE 285


>gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5]
 gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
 gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++L+         I+TVWG GY + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226


>gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 219

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A+VRR+ 
Sbjct: 61  DILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S +  G +++N       + G  + L  KE+ ++ELL   K   L +++    LY+
Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I T+ G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTMHGIGYTL 216


>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
 gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS-DIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSHT 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G     I   +L +    +        + LT  E+ ++          LTKE     
Sbjct: 122 QKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLLEE 228


>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 222

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD  +   I + LK E F       G + + L +    D  I+D+ +  + G 
Sbjct: 1   MRILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVMMPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + + L       PV +L+  ++++DK +G  +GADDY+ KPF  +EL+ R+RAI+RR +
Sbjct: 61  TLTKNLVEIG--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S I   ++ ++     V+V      L  KE++++ +L  R     T++  +  ++ 
Sbjct: 119 KTERSQIKIANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   +   I +LR +L         I+TV G GY + E
Sbjct: 179 YDYDGDDFTLTTHIKRLRSRLEEVNAQVK-IQTVRGIGYKIEE 220


>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
          Length = 266

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/234 (31%), Positives = 116/234 (49%), Gaps = 19/234 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 38  RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVAR+RA++RR   
Sbjct: 98  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGH 156

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                         A   +  GDL V+ +   V   G RI LT  E +++   S    T 
Sbjct: 157 AGGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTV 216

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+++  L  ++D     + +++DV + +LR K+         IETV G GY LR
Sbjct: 217 LSRDRLLERVWDYGWGGDTRVVDVHVQRLRAKIGQD-----RIETVRGFGYKLR 265


>gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 228

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I L+EDDK +A ++ L+L SE F V       D I +    +FD  ++D+ L D  G
Sbjct: 1   MKHIFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNKFDLALIDISLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F V   ++   ++ PV  L+        V GL  GADDYI+KPF   EL+ARI+  +R+S
Sbjct: 61  FTVCTEIKEM-MNIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNALRKS 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                +  + G L V+  +  V+  G+ + L+  EY+++ +      + +T+   L+ L+
Sbjct: 120 ESFGTNFEIRG-LYVDTVSGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRTKLLDELW 178

Query: 180 D-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 179 DAAGEFVNDNTLTVYIKRLREKIENDPADPQIILTVRGTGYRL 221


>gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 228

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+I+DD  L+  ++ +L  EN  V     GE G+        D I+LD+ +  + GFE
Sbjct: 3   HILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAGLAAMD-DSVDLILLDVMMPKLNGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K   PV +L+      D+V GL+ GADDY+ KPF++ EL+ARIRAI+RR++ 
Sbjct: 62  TLKQLRE-KWDVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRRTQA 120

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++   D+ +          G  + LT  E+ ++    L     LTKE     
Sbjct: 121 GKGQQQNDVVTYRDIKLYPGRLEAYCNGDLLDLTSTEFALLHYFLLHPGKVLTKEDLSLD 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   R     + ID+ +  LRKKL +   GK  I+T+ GRGY+L E
Sbjct: 181 VLGKRLAAFDRAIDMHVSNLRKKLPDWPNGKPRIKTLRGRGYLLVE 226


>gi|296118804|ref|ZP_06837380.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968293|gb|EFG81542.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 122/225 (54%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD A++  + ++L+SE         G D +   + +  D I+LDL L  + G +
Sbjct: 4   KILVVDDDPAISEMLTIVLESEGLQPIPITDGNDAVPAFEQHNPDLILLDLMLPGMNGVD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + RA+R    + P+ +L+  +   D V GL+SGADDY++KPF  +ELVAR+RA +RR+  
Sbjct: 64  ICRAIRRDS-NVPIVMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRTET 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEV------QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +  +I  GDL V++   TV        +   + LT  E+ ++  ++ +     T+E  L
Sbjct: 123 TSSEIIEVGDLLVDVSEHTVIRRPADGGEDEELSLTPLEFDLLVEMARKPGQVHTREELL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             ++  R   + ++++V + +LR K+ +       + TV G GY 
Sbjct: 183 EKVWGYRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 227


>gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIP 58
           MR+LL+EDD+ L   I   LK     +     G+   ++       FD IILDLGL    
Sbjct: 10  MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G +VL+ +R     TPV IL+   +++D+++GL +G+DDY++KPF+ EEL AR+RA+ RR
Sbjct: 70  GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           S+  A+ +I  GD++++  +  V ++   + +  +E+ +++ L       +++E     L
Sbjct: 130 SKERAKPIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQTL 189

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           Y   +  +   ++V I  LRK+      G   I T+ G GY++ + ++
Sbjct: 190 YGWGENIDSNALEVHIHNLRKRF-----GAKLIRTIRGVGYMVEKKSE 232


>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 222

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 118/226 (52%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A  +  +L    + V   + GE+        ++D  +LDLGL  + G 
Sbjct: 1   MRILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+   +  ++V G+ +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  AVLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  + ++G + ++     V      ++L+  EY+ +  L       +     + HLY 
Sbjct: 121 GRAVPVFISGPVVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELMEHLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   ++V + +LR+KL         IET  G GY++ E A 
Sbjct: 181 HDHDRDPNALEVLVGRLRRKLGVD-----LIETRRGFGYLVPEPAP 221


>gi|167035228|ref|YP_001670459.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|166861716|gb|ABZ00124.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 232

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ LA      L++  + V V   G          + D +ILDL L    G  
Sbjct: 7   RILIVEDDQRLADLTAEYLQANGYEVSVEGDGARAARRIVDSQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R   +  P+ +L+  S   D+V+GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRRVRSQYLG-PILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARIQALLRRSET 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +  G L ++   +   +    I LTG E+ ++ LL+      LT+E     L 
Sbjct: 126 VDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLTREQIFTALR 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               + + + ID+ I K+R K+ +       I+T+  +GY+    A 
Sbjct: 186 GVGYDGQDRSIDIRISKIRPKIGDDPLQPRLIKTLRSKGYLFVGEAP 232


>gi|163838960|ref|YP_001623365.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
 gi|162952436|gb|ABY21951.1| two-component response regulator [Renibacterium salmoninarum ATCC
           33209]
          Length = 248

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 111/229 (48%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           +IL++EDD  +  + +L L      V    LG +G+   +     + I+LDL L D+ GF
Sbjct: 20  KILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLMLPDLDGF 79

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V RA+R   +  P+ +++  S   D V GL++GADDY+ KP +   L ARI A++RR+ 
Sbjct: 80  SVCRAIRQTSL-VPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRNN 138

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +++ G L ++  A +V      + L+  E +++  L        ++E  L
Sbjct: 139 FEGEAADKADVVINGALRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQVRSREQLL 198

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++      + +++D  I +LR K  +       + TV G GY   + 
Sbjct: 199 RSVWGAEYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRFDQQ 247


>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 224

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  +A  IE  LK    +V V   G+ G ++ +   FD +ILD+ +  I G E
Sbjct: 3   KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKINGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +L+   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 EVPSNLLTCDNLVLDCNTRKAKRGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|226307885|ref|YP_002767845.1| two-component response regulator MprA [Rhodococcus erythropolis
           PR4]
 gi|229495087|ref|ZP_04388833.1| response regulator [Rhodococcus erythropolis SK121]
 gi|226187002|dbj|BAH35106.1| two-component response regulator MprA [Rhodococcus erythropolis
           PR4]
 gi|229318018|gb|EEN83893.1| response regulator [Rhodococcus erythropolis SK121]
          Length = 228

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V +   G D +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYTVELAVDGLDALEKILANRPDAVVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRTA 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++   DL+++   + V+     I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PDLDADSEMMAFEDLTLDPVTREVKRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEPRLIHTVRGVGYVLRETPP 228


>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 231

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L  +I+  L  + + V     G D     +    ++   I D  L  I 
Sbjct: 1   MRVLLVEDEPDLGAAIKRTLTQQKYLVDWVLDGNDAWAYLENQWTQYTLAIFDWMLPGIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR  +   PV +L+    +EDKV GL +GADDY+ KPF   EL+AR+RA+ RR
Sbjct: 61  GLELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           S       +  G+L+++     V  Q        I LT KE+Q++E      N  +T E 
Sbjct: 121 SPQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQEISLTNKEFQLLEYFMKHPNQIVTTEQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             N L++   EP   ++   +  LR+KL   +G  N IET+ G GY L
Sbjct: 181 IRNQLWEVSAEPISNVVAAQMRLLRRKL-TNSGCGNMIETLHGTGYRL 227


>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
 gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
           MED134]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 58/225 (25%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +   +   L +E + V     G + ++L K ++   IILD+ + ++ G E
Sbjct: 7   KILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMPEMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
               +R  K    T +   +       +V G  +GADDYI+KP   + L+++++A++RR 
Sbjct: 67  ACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVKALLRRF 126

Query: 120 RGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       +   G L +N +   V      + L  KE++++ LL+ +     T+E  L+ 
Sbjct: 127 KNEEAPSQITKVGKLIINREEYKVFKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDK 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + IDV I KLR+K+ + +      +TV G GY   
Sbjct: 187 VWGLEVVVGGRTIDVHIRKLREKIGDESF-----KTVKGVGYKFV 226


>gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 223

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L+I+DD      +   L+ +   V     GE G+ +     + AI++D  +  +PG E +
Sbjct: 2   LVIDDDARTRAFVAEGLRQQGHTVDEAGDGEAGLHMAMEGAYAAIVVDRMMPGLPGLEAV 61

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-GH 122
           +A+R   + TPV +L+ + S++D+V GL +GADDY+ KPF   EL AR++A+VRR     
Sbjct: 62  QAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRPPLAE 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A +     DL V++ A      G  + LT  E++++E L+      +T+ M L  L+   
Sbjct: 122 ATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESLWGFH 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +P   +ID  I +LR K+ +    +  I T+ G GYVL+  
Sbjct: 182 FDPRANLIDAHISRLRAKV-DRGFDQELIHTIRGVGYVLKAP 222


>gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896]
          Length = 225

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 127/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L  SI   L+ + + V     G+D  ++     +D IILDL L  + G 
Sbjct: 1   MRILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR++R     T + ILS    ++DK+ GL +GA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 61  DVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRRV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G+L+++  A+TV  +G    LT KE+ ++E L L ++  + +E  + H++D
Sbjct: 121 VQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     I V I  LRKKL    G  + I    G+GY++ E 
Sbjct: 181 ASVDSFSNSIRVHISALRKKLKAVLGY-DPIVNRVGQGYIIGEE 223


>gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
 gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter
           sp. RUH2624]
          Length = 224

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTTTLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIRQ-RAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ + + I + LK+E   V+    G + IE+    +   IILD+ +    G   
Sbjct: 6   VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKVHLIILDIMMPRQDGIST 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  K + P+ +LS  S   DKV GLQ GADDY++KPFN  EL+AR+++ +RR    
Sbjct: 66  TFKIREQK-NIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRRYVTL 124

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I    L ++++AK+V + G  I LT  EY+++ELL        +       +
Sbjct: 125 GTYEEKKTIDIRGLVLDIEAKSVTLDGGFIKLTPIEYKIVELLMKNAGRVFSIHDIYERV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         + V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 WNEPGYNAENTVAVHIRKIREKIEIEPKNPRYVKVVWGLGYKMEK 229


>gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 220

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
 gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
           13479]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 129/227 (56%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +  ++   L+   + V     G D +E C   E+D ++LDL L  + G 
Sbjct: 1   MRLLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNLPGLDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  +    V ILS  S + DK+RGL SGA DY++KPF+ EEL ARIR ++RRS 
Sbjct: 61  EVLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L ++ + KT   QG  +  + +E+ ++E L +     ++ E  L H++D
Sbjct: 121 IQTEAALTRGGLCLDSNLKTASFQGRPLEFSMREFSILEYLMIHMGRPVSAEELLEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +P    + V+I  +R+KL  A   +  I ++ G GY++ +  ++
Sbjct: 181 SEADPFSNQVKVYISVIRRKL-QAVTDEEIIRSIRGAGYLIDKEEEE 226


>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
          Length = 234

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 16/235 (6%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL++EDD A+   + ++L+ E + V   + G   ++     + D +ILD+ +  
Sbjct: 1   MKMDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV-SDDIDLVILDIMMPG 59

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G +    +R      PV  L+  S   DK+ GL +G DDY+ KPF+  EL+AR++A++
Sbjct: 60  ISGIKTCEEIRKIS-HVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALL 118

Query: 117 RRSRGHAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
           RR   ++Q+          I  G + VN     V      I L   EY+++ L+      
Sbjct: 119 RRYHVYSQTLQGEKTKEHWIEYGKVKVNTQCNEVFRNEKEISLREMEYRILLLMMENPKK 178

Query: 168 TLTKEMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + +     L++          + V I +LR K+ +       I+TVWG+GY L
Sbjct: 179 VFSVKNLYESLWEEPFLYSSGNTVMVHIRRLRMKIEDDPQKPKMIQTVWGKGYRL 233


>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
 gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
          Length = 242

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDYI+KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTNEH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 237


>gi|167465417|ref|ZP_02330506.1| two-component response regulator [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322383772|ref|ZP_08057523.1| two-component response regulator YkoH-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151984|gb|EFX44927.1| two-component response regulator YkoH-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   +   L  E + V V + G  G+ L   Y+   +ILD+ +  + G+E
Sbjct: 4   KILVVDDDEKITSMLRRGLAFEGYTVEVANDGSQGLRLMMEYDPQLMILDVMMPHVDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE---LVARIRAIVRR 118
           V R +R      P+ +L+    I D+V+GL  GADDY+ KPF  EE    V  +      
Sbjct: 64  VCRRVREGGSDVPILMLTAKDEISDRVKGLDIGADDYLVKPFALEELLARVRVLLRRRSE 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +   D++++LD + V  +   I LT KE+ ++ L  L     L++++ ++ +
Sbjct: 124 RPERPTNKLTYQDIAMDLDTREVFREDKLIELTTKEFDLLHLFLLNPRRVLSRDLIMDKI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E  +++V+I  LR+K     G K  I+TV G GYVLR
Sbjct: 184 WGYDYSGESNVLEVYIALLRQKTEEH-GHKRIIQTVRGAGYVLR 226


>gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 241

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  ++  +   ++ E F + V +       + +    D IILDL L    G  +
Sbjct: 8   LLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLMLPGEDGLSI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR      P+ +LS  S   D+V GL+ GADDY+ KPF   EL+AR+RA++RR+   
Sbjct: 68  CRRLRQ-SDDIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRRAQAS 126

Query: 120 -RGHAQSLIVTGDLSVNLDAK---TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R  A          +++DA+   TV      I LT  E+ ++     R    L+++  L
Sbjct: 127 PRREASRRFAFDRFVLDVDARSIETVSGGDAPIQLTSAEFDLLACFVQRPRRVLSRDQIL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +       EP  + +D+ I +LR+KL  A+ G + I TV   GY+ 
Sbjct: 187 DFTRGRSAEPFDRTVDMLISRLRRKLEAASPGTSLITTVRNGGYLF 232


>gi|326692618|ref|ZP_08229623.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
          Length = 210

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 108/200 (54%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+ +L   ++  L  E + V     G+ G+ L      DA++LD  L    G  V
Sbjct: 4   VLIIEDEMSLQFYLKNELTFEGYTVLQAFDGQQGLALLASETGDAVLLDWMLPKKSGMAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR +R    + PV +++  S ++DKV GL +GADDY++KPF  EEL+AR+R ++RR    
Sbjct: 64  LRHVRQTNQTLPVILMTAKSELDDKVMGLDNGADDYLTKPFETEELLARLRVVLRRQVAP 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q+     DL++N     V+     I LT +E+ ++  L   +   ++++  L+H++   
Sbjct: 124 VQTTFEVADLTLNTTTHRVQRGDQLIALTQREFDLLAFLMQHEGQVVSRDAILDHVWGID 183

Query: 183 DEPEVKIIDVFICKLRKKLS 202
              +   +DV I  LR+K+ 
Sbjct: 184 FAGQYNTVDVNIHHLRQKIE 203


>gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
 gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130]
          Length = 228

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL EDD  +AH + L L++    V     GE G       EFD +I+D  +    G  
Sbjct: 4   KILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRMMPKRDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ++TPV ILS +  ++D+V GL++G DDY++KP+ + EL+AR+ A+ RRS  
Sbjct: 64  MVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRSTV 123

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A ++    GDLS++  ++  E  G  I L  +EY++++ L       +T+ M L ++++
Sbjct: 124 QATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P+  +IDV + +LR K+         + TV G+GY L 
Sbjct: 184 LNFDPQTNVIDVHVSRLRSKIDKGFDKP-LLHTVRGKGYRLE 224


>gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 219

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE     ++V +  LR+KL +      +I TV G GY L +
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLSD 218


>gi|168179958|ref|ZP_02614622.1| two-component response regulator [Clostridium botulinum NCTC 2916]
 gi|182669104|gb|EDT81080.1| two-component response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  G
Sbjct: 1   MKSILLVEDNMSLNRGIQFSLMKEGYNVIATDSMKESQQKLNKEKVDLIILDINLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+
Sbjct: 61  FDYCLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRT 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I + D+   ++   +E  G  I L+  E ++++         L+KE  +  L
Sbjct: 120 SNDCDFNIIQSKDIFFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIESL 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +      + V I ++R+K+        YI+T+ G GYV +E
Sbjct: 180 WNIDGEFINENTVAVNIRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
           CNB-440]
 gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
           [Salinispora tropica CNB-440]
          Length = 227

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G E
Sbjct: 3   RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMSGSE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R LR      P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR   
Sbjct: 63  VCRQLRQRS-HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRKSV 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  + +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ 
Sbjct: 122 ETVESGAATLAAGPVRMDIERHVVTVDGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDR 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + K +DV + +LR K+        +I TV G GY    
Sbjct: 182 VWGADYVGDTKTLDVHVKRLRSKVEPEPSTPRHIVTVRGLGYKFEP 227


>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D+  +A  + L L  E + V +   G   IE  +    D IILD+ L  + G+E 
Sbjct: 6   ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPAMDGYET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +L+     +  V GL SGADDY++KP++  +L+AR+RA++RR    
Sbjct: 66  CRRIREFS-NVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRRIPPQ 124

Query: 123 AQSLIVTGDL-SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +     L  ++   + ++V+   I LT  EYQ++ LL+      +  E  L  ++  
Sbjct: 125 RPIITAGEGLMVLDRQRRELKVKDKVIDLTPTEYQLLILLADSVGQVVPHEKLLGSIWGS 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E +   + V+I  LR+KL +       + T WG GY L E
Sbjct: 185 GKESDHDSLKVYIWHLRRKLEDNPRQPKILLTEWGVGYRLAE 226


>gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
 gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
           FB024-16]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 115/225 (51%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+ +   +   L S  F  +  +  +           + ++LD+ L    G ++
Sbjct: 2   IYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+  +     P+ +++   +  +KV+ L  GADDY++KPF   ELV+R+RA++RRS 
Sbjct: 62  LRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRSS 121

Query: 121 GHAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              Q      ++  G +S+NL    V V G  + LT KEYQ++E L  +     +++  L
Sbjct: 122 RSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++      E + +DV I  LRKKL  AA    Y++TV G GY 
Sbjct: 182 DSIWGYSFHGETRTVDVHIRTLRKKLGEAA---KYVKTVRGVGYK 223


>gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 217

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 122/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   L  S+   L+   + V +   GE G+ L +   +DA++LD+ L  + G 
Sbjct: 1   MRVLLVEDSPRLQRSLGAALRKSGYAVDIAGDGEQGLWLAETNSYDAVVLDIMLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     T + +L+   +++D+VRGL  GADDY+ KPF  EEL+AR+ A+ RR+ 
Sbjct: 61  SVVRQLRAKGRDTHILLLTAKDTVDDRVRGLADGADDYLVKPFALEELLARVHALCRRTY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + I    L +N  +KTV+   H + L  +EY+++E L+ R    +T+     H+YD
Sbjct: 121 GGKSTSICVAGLELNTSSKTVKRGEHIVDLLPREYRLLEYLAARTGQVVTRTEIETHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               P   ++D  IC LRKK+ N       I T  G GY+ 
Sbjct: 181 DLATPMSNVVDSAICALRKKIGN-----ERIRTRRGLGYIF 216


>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
          Length = 229

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 110/228 (48%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V     G++ + L +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTSG-VPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQAS 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I LT  E++++      +   LT+E  ++
Sbjct: 124 KKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   +    +I TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKS---KHITTVVRTGYKFEGN 228


>gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
 gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5]
          Length = 226

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L++          G   +E   F   + I+LD+ L    G  +
Sbjct: 2   IYCVEDDDNIRELVIYTLETTGLKAQGFAEGGSFMEALAFDTPELILLDIMLPGEDGLSL 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L  L+ +      PV +++   +  DKV GL SGADDY++KPF   ELV+R++A++RR+ 
Sbjct: 62  LGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLRRTG 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R   +  +  G + VN+    V V G  + LT KE++++E L   +N  LT++  L  ++
Sbjct: 122 RASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLEDIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + E + +DV +  LR+KL         IETV G GY +
Sbjct: 182 GYDFDGETRTVDVHVRTLRQKLGVKG---EIIETVRGVGYRI 220


>gi|190895522|ref|YP_001985814.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
 gi|190699467|gb|ACE93551.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
          Length = 230

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V      E   +       D ++LDLGL D PG +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVQEVPNAESARQSVADDMPDLVVLDLGLPDTPGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWRDGGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V+I ++R+K+        YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYIRQIRQKIEKIPDQPYYITTETGVGYRLREP 229


>gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
          Length = 225

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 6   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 66  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 126 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 186 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 225


>gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311]
 gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311]
          Length = 240

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGF 60
           +LL +D+  +   +E+ L++E F V     G   ++  +      D  +LD  +  I G 
Sbjct: 8   VLLADDEVNIVTLLEMELQAEGFTVVTATDGISALKKLREPDTPVDLALLDWNMAGITGL 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           ++ R LR   +S PV I++    I+D++  L++GADD+ISKPFN  E++AR++A++RR  
Sbjct: 68  DICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRAT 127

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 S   +  L+  G L++N   +T  + G  + LT +E+ +++         L++ 
Sbjct: 128 FCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSRG 187

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + H++      +  ++DVF+  LRKKL  A G +  I+TV G G+ LR
Sbjct: 188 QLIQHVWGDDYFGDENVVDVFVRYLRKKLE-AGGSERVIQTVRGVGFALR 236


>gi|113955138|ref|YP_730441.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113882489|gb|ABI47447.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 255

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 7/234 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD  L   +   L  + ++V      +      +F   D I+LDL +    G   
Sbjct: 21  IWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQLEARLEFQRPDLIVLDLMMPGDDGLTA 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR A    PV +L+      D++ GL+ GADDY++KPF   EL ARI A++RR    
Sbjct: 81  LRRLRDAGDDLPVVMLTARGDGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRSSI 140

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +  G+   +L A+T+   G  + +T  E+ ++       +  L++E  +
Sbjct: 141 PAGTPLAEGGDVTFGENQFDLSARTLFRNGSPVVITSGEFSLLAAFVQHPHRPLSRERLI 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
                   + + + +DV + ++RK +        YI+TVWG GYV   + +  +
Sbjct: 201 ELARGPGSDTDSRSMDVQVSRVRKLVEPDPARPRYIQTVWGYGYVFVPDGQPRS 254


>gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 02_1987]
 gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis 94_M4241A]
 gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T92]
 gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis EAS054]
 gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis GM 1503]
 gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis '98-R604 INH-RIF-EM']
 gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis 210]
 gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
 gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN R506]
 gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN V2475]
 gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium tuberculosis H37Rv]
 gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA
           [Mycobacterium bovis AF2122/97]
 gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis C]
 gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium tuberculosis H37Ra]
 gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis F11]
 gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein
           [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 1435]
 gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T46]
 gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CPHL_A]
 gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 605]
 gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis K85]
 gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 02_1987]
 gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T92]
 gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis EAS054]
 gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA
           [Mycobacterium tuberculosis GM 1503]
 gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T85]
 gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra
           [Mycobacterium tuberculosis 94_M4241A]
 gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu001]
 gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu002]
 gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu003]
 gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu004]
 gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu005]
 gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu006]
 gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu007]
 gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu008]
 gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu009]
 gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu010]
 gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu011]
 gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis SUMu012]
 gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis CDC1551A]
 gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis W-148]
 gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis KZN 4207]
          Length = 236

 Score =  249 bits (637), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 26  LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 145

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 205

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A GG   + TV G G+VLR
Sbjct: 206 FIGYLRRKLE-AGGGPRLLHTVRGVGFVLR 234


>gi|332527956|ref|ZP_08403990.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332112530|gb|EGJ12323.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 234

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD  L   +   L+   F V        G E  +   +DA++LDL L D  G +
Sbjct: 4   RLLLIDDDSRLTTMVGDYLRRNGFEVDTAGSLAAGREQLRHRAYDALLLDLMLPDGDGLD 63

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR        P+ +L+      D++ GL+ GADDY+ KPF   EL+AR++A++RR+
Sbjct: 64  LTRELRSDARTRRLPLLMLTARGEPMDRIVGLELGADDYLPKPFEPRELLARVKALLRRA 123

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   ++  G L V+L A+   + G    LT  ++ ++ +L+      L+++  ++ 
Sbjct: 124 APEPAGDEVLRFGRLEVDLGARQARLDGQPCDLTSHQFDLLVVLAQSPGRVLSRDQIMDA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           L     E   + IDV I ++R  + +       + TV G GYV  +    E
Sbjct: 184 LKGHPLEAFDRSIDVHISRIRAVIEDDPKNPKRVLTVRGAGYVFAKKQDAE 234


>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
           [marine bacterium HP15]
          Length = 241

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D + +   +   L+     V + D G+      + +  D ++LD+ +    G  +
Sbjct: 7   ILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIMMPGDDGLTL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+ MS   D++ GL+ GADDY++KPFN  EL+ARI+A++RR+   
Sbjct: 67  CRYLRE-HTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRRTTAL 125

Query: 123 AQSL-------IVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +     ++++D    ++ +G  + L+  EY+++          L+++  
Sbjct: 126 PPQRSPMAGQSLTFEGWTLDVDRHQLIDPEGVEVSLSTAEYKLLLAFLEHAGRVLSRDQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++       +   + ID  + +LR+K+   A     I+T+WG GY  
Sbjct: 186 MDLTLGREADAFDRSIDNHVSRLRRKIDPDARSPRLIKTIWGGGYQW 232


>gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 116/228 (50%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V    +  +   PV  L+        V GL  GADDY++KPF   EL+ARIR  +R+S G
Sbjct: 63  VCTETKETQ-DIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            + S      L V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 121 CSPSASEICGLHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRARLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +      + V+I +LR+K+ N       I TV G GY L +N   E
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPTSPQIILTVRGTGYRLGDNYASE 228


>gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
 gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii
           AYE]
 gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter
           baumannii AB0057]
 gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013150]
 gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter
           baumannii 6013113]
          Length = 220

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 130/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 226

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 131/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++   + V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKDE 226


>gi|330466506|ref|YP_004404249.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
 gi|328809477|gb|AEB43649.1| two component transcriptional regulator [Verrucosispora maris
           AB-18-032]
          Length = 222

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERHLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELASSGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL V+   +T    G  + LT KE+ ++  L   +   ++ E  L  ++D
Sbjct: 121 PAAPPVLELADLVVDPARRTATRGGAPVELTNKEFGVLCELLKARGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +P   I+ V +  LR+KL +       IETV G GY 
Sbjct: 181 ANTDPFTTIVRVTVMTLRRKLGD----PPLIETVVGAGYR 216


>gi|327190898|gb|EGE57954.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli
           CNPAF512]
          Length = 230

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V          +       D ++LDLGL D PG +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAASARQSVADDMPDLVVLDLGLPDTPGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V+I ++R+K+        +I T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYIRQIRQKIEKIPDQPYFITTETGVGYRLREP 229


>gi|229826153|ref|ZP_04452222.1| hypothetical protein GCWU000182_01525 [Abiotrophia defectiva ATCC
           49176]
 gi|229789023|gb|EEP25137.1| hypothetical protein GCWU000182_01525 [Abiotrophia defectiva ATCC
           49176]
          Length = 229

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/212 (31%), Positives = 106/212 (50%), Gaps = 7/212 (3%)

Query: 17  ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVC 76
           +  L+  +F V +   GE G+E     +FD I+LD+ L    GFE+ + +R  K   P+ 
Sbjct: 18  KDYLELSDFEVVIEGNGEKGLEKALKEDFDLILLDVMLPGKDGFEICKEIRKEK-KIPIL 76

Query: 77  ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR------SRGHAQSLIVTG 130
           ++S      DK+RGL  GADDY+SKPF+  ELVAR++A + R      S     S I   
Sbjct: 77  MVSAKKDDIDKIRGLGLGADDYLSKPFSPSELVARVKAHLARYERLVNSSDEKNSFITVR 136

Query: 131 DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKII 190
            + ++  A+ + V       T KE+ ++  L+   N   +KE     ++      ++  +
Sbjct: 137 GIRIDRTARRIFVNDEEKSFTTKEFDLLTFLADNPNHVYSKEELFREVWGMESVGDIATV 196

Query: 191 DVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            V I K+R+K+        YIET+WG GY  +
Sbjct: 197 TVHIKKIREKIEEDTTNPQYIETIWGVGYRFK 228


>gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 230

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|330899231|gb|EGH30650.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 230

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 120/221 (54%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R++ G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296]
 gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296]
          Length = 232

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGRETEQIEFGDLVINHVTHEVRIGEQPLELTVKSFELLWILASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++L+         I+TVWG GY + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNAPAIKTVWGLGYKME 226


>gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2]
 gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2]
          Length = 236

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 15/234 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +  +I++ LK++ + V++ + G++G+ + K    +  ++D+ +  + G  +
Sbjct: 5   ILVVEDEKGIREAIQIYLKNQGYRVFLAENGQEGLNIIKRETINLAVVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              +R      P+  LS  S   DK+ GL  GADDYI+KPF   EL+AR+R+ +RR    
Sbjct: 65  TMEVRKD-YDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQI 123

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                         + +   G L +N   K V V    + L  KE+ ++ELL        
Sbjct: 124 LMLKEHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRVF 183

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + +     +++  +    + + V I KLR+K+        Y++ VWG GY + +
Sbjct: 184 SAQQIYEAVWN-EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236


>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
 gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
           [Pseudomonas fluorescens WH6]
          Length = 234

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 10  ILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGLPDMDGQQV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R    + PV +LS  +S   KV  L  GA+DY++KPF  +E +AR+RA++R++   
Sbjct: 70  LREFREWS-TVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAPAG 128

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 129 EAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHAGRVITQQQLLKDIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 189 PTHTEDSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229


>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
 gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGF 60
           +IL+ ED++ +   +   L  E F V     G+  +E  +   +   ++LD+ +    G+
Sbjct: 4   KILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  R +R  K + P+ +L+   S +D+V G  +GAD+YI+KPF+   LV R++ ++RR+ 
Sbjct: 64  DACREIR-GKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRTS 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +  G + V    +TV V G +I  T KE+ ++  L    N  LT++  +  ++D
Sbjct: 123 SNDMSDVSAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICTVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +D  I  LR KL   A     I TV   GY   
Sbjct: 183 MDYAGDDRTVDTHIKCLRAKLGPYA---KCIVTVRKVGYKFE 221


>gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
 gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family
           protein [Nitrobacter sp. Nb-311A]
          Length = 230

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESADYLVKAFREVGHVAELAGDGEEGLSLADGGDYDVLVIDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   I TPV ILS +  ++D+V+GL++G DDY+ KP++  EL+AR+  + RR  
Sbjct: 61  SVIGCLRDKGIQTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSRRHV 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+  +   GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 121 GRAEETVYRVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P+  +IDV I +LR K+         + T+ G GY++R
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGFEQP-LLHTIRGAGYMIR 222


>gi|115523977|ref|YP_780888.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115517924|gb|ABJ05908.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 219

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 124/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  LA  I   L+   + V  +  GEDG  +     +DA+ILDLGL  + G 
Sbjct: 1   MRILLIEDDSRLARQIAEALQRAGYIVDRSADGEDGWFMGDSAIYDAVILDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R AK S PV IL+   S  +KV GL+ GADDY++KPF  EEL+ARI A++RR+ 
Sbjct: 61  AVLRRWRAAKRSMPVLILTARGSWREKVMGLREGADDYLTKPFEMEELLARIEALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S+I    L ++  A+ +      + LT  EY+ +    +     ++K     H+Y 
Sbjct: 121 GHASSVIDVAGLRLDPAAQRIVRNDEVLDLTSLEYRALSYFMMHPAKVVSKTELTEHIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+ +  +I+V + +LRKK+     G   I T  G+GY L
Sbjct: 181 QDDDRDSNVIEVLVNRLRKKI-----GAELIRTRRGQGYEL 216


>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 224

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L++  + V     G + +EL   +  D +ILDLGL D+ G +
Sbjct: 3   RVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLDGVD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+  LR    + P+ +LSG S   DKV  L +GADDY++KPF  +EL+AR+RA++RR++ 
Sbjct: 63  VIAGLR-GWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRRNQA 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GD+ V+L A  V V+G  I LT  E+ ++E+L       +++   L  ++ 
Sbjct: 122 VDPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     + +++ +LR+KL        Y  T  G GY    
Sbjct: 182 PGYETAQGNLRLYVAQLRRKLEPDPSRPRYFRTEPGMGYRFEP 224


>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
           pseudomallei K96243]
 gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 247

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
 gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
          Length = 224

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 115/220 (52%), Gaps = 1/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+ +DD+ +   I L L+++ F +     GE+     + +  D  ++D+ +    G+
Sbjct: 2   IQILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + ++      PV +++      DK++G   G DDY+ KPF+ +E+VAR++A++RR R
Sbjct: 62  ELTKEIKE-YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A ++I  G++ ++     +        L  KE++++  L        T++  +  ++ 
Sbjct: 121 VEANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E E + +DV I +LR++L++       I+T+ G GY 
Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220


>gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184]
 gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184]
          Length = 221

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGYQI 218


>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
           [Fluviicola taffensis DSM 16823]
 gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
           [Fluviicola taffensis DSM 16823]
          Length = 229

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+K +   ++  L+ E + V+V   G +G+E+ +    D I++D+ +  + G E 
Sbjct: 9   ILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGIEA 68

Query: 63  LRALRVA-KISTPVC-ILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            + +R   ++ +P+   L+  +    +V G ++GADDYI+KP     LV+++ A++RR+ 
Sbjct: 69  CQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRRAG 128

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  I T  ++VN +   V +    I L  KE+++IELL+ R     T+E  L  +
Sbjct: 129 RMNGGEPEIKTSSITVNREKFLVYMNEEEIQLPKKEFELIELLASRPGKVFTREQILTTV 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +        + IDV I KLR+KL  +     YI T+ G GY   E
Sbjct: 189 WGDETIVGERTIDVHIRKLREKLGES-----YIRTIKGVGYTFSE 228


>gi|260577375|ref|ZP_05845345.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
 gi|259020411|gb|EEW23737.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sp. SW2]
          Length = 227

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+  +   + + L++E  +V       +GI          +ILDLGL D  G  
Sbjct: 6   RILVIDDEAPIRRFLRVPLEAEGHSVIEAANAREGILAVAREAPGLVILDLGLPDADGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  +    KV  L +GA DY+ KPF  +EL+ARIR+++R R+ 
Sbjct: 66  VLREIRGWS-QVPVLVLSVRTDEAGKVAALDAGAQDYVVKPFGMKELLARIRSLLRGRAG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   DL ++    TV   G  +HLT +E+ ++ LL+      +T+ M L  L+ 
Sbjct: 125 STPPTVIEIADLHIDPGNHTVTKAGAALHLTRREFDLLWLLASHAGRLVTQGMILKSLWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + + + V++ +LR+KL + A    YI T  G GY  
Sbjct: 185 PAHAEDSQYLRVYVRQLRQKLGDDAANPRYIITEPGIGYRF 225


>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
 gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
          Length = 239

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/226 (26%), Positives = 114/226 (50%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L +E + V   + G +G+E  K  +   IILD+ + ++ G 
Sbjct: 18  IKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMPEMDGI 77

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       +V G  +GADDYI+KP   + L+++++A++RR
Sbjct: 78  EACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVKALLRR 137

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S     +++  G++ +N +   V V    + L  KE++++ LL+ +      +E  L+
Sbjct: 138 FKSPSKVDTVVKIGNIIINREEYQVTVGKTELVLPRKEFELLSLLASKPGKVFKREEILD 197

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I KLR+K+ +        +TV G GY + 
Sbjct: 198 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----RFKTVKGVGYKIV 238


>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
 gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 4/220 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L++D+K +   + L L+  ++       G   +EL K   FD ++LD+ + D+ G+EV 
Sbjct: 1   MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIMMPDMDGWEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           R +R      P+ +L+     ED V+GL+ GADDY++KPF +EEL+AR+ A++RRS    
Sbjct: 61  RDIRKFS-DIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRRSA--P 117

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              I    L  + +   +  +   I LT KE+ M+ LL    N    ++  L  ++    
Sbjct: 118 ARRIEFRGLLWDEEGFELSYEQKSIRLTPKEFSMLGLLMKNPNKVFERDRLLELVWGYDS 177

Query: 184 EPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           E E + +D  +  +R+K+  A     ++  TVWG GY   
Sbjct: 178 ETEGRTVDSHVRNIREKVRQAGFPVDDHFLTVWGIGYKWV 217


>gi|322436892|ref|YP_004219104.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321164619|gb|ADW70324.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 233

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 128/224 (57%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ ++ ++   LKS  + V      EDG+ L      D I+LDLGL  + G E
Sbjct: 8   RILVVEDERKISEAVTAGLKSAGYEVLAARTVEDGLFLLHSQHPDMIVLDLGLPGMSGME 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR   I  PV IL+  +S++D+V  L  GADD++ KPF+  EL AR+RAI RR R 
Sbjct: 68  MLRQLRAMGIMIPVLILTSNNSLDDRVAALDLGADDFLLKPFSTAELNARMRAISRRGRP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +   DL +NL+ +TV   G ++ LT +E+ +I      +  T+++EM    ++  
Sbjct: 128 TQVAQLSVADLEINLETRTVVRGGMQLELTAREFDLIVYFVGNRGRTVSREMLARDVWHE 187

Query: 182 --RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             R  P   +IDV I +LR+KL +    +  + TV G G++L E
Sbjct: 188 TSRFTPIDNVIDVQITRLRRKL-DDPFPQKLLRTVRGVGFILGE 230


>gi|295091309|emb|CBK77416.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 247

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-GF 60
           +IL+ +DD A+   +  +++   F       G + +   +  EF  I+LD+ +     GF
Sbjct: 19  KILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGNDDGF 78

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
             ++ LR +  +TP+ +LSG S   D + GL  GADDY+SKPFN   L A+I+A+VRRS 
Sbjct: 79  HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 138

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R  A  ++  G    N         G  I L+ +E+ ++ L         +KE     
Sbjct: 139 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 198

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++     +  +I V+I  LR K+ ++     +I+TVWG GY  
Sbjct: 199 VWN-NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 241


>gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14]
 gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14]
          Length = 233

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  +
Sbjct: 7   VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR    
Sbjct: 67  CRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   S      ++  GDL V+ D   V   G  + LT  E +++   S    T L+
Sbjct: 126 GGARAAADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLS 185

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 186 RDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 232


>gi|29828737|ref|NP_823371.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29605841|dbj|BAC69906.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 262

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 18/243 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E ++      GE+ + L   +  D ++LDL L DI GF 
Sbjct: 20  RLLVVDDDPPIADLVATVARYEGWDAVTAYSGEEALRLAAEFPPDIVVLDLMLPDIDGFG 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR +    PV  L+   ++ D+V GL  G DDY+ KPF  EEL+AR+R ++RRS G
Sbjct: 80  VLDRLRRSGTMVPVVFLTARDTVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSAG 139

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +S++   DL+++ D + V      + LT  EY+++  L  +    LTK   L+H++
Sbjct: 140 PGFQRSVLRVADLTMDEDTRQVRRGDRLLTLTPTEYEVLRYLMRKSPAVLTKAQILDHVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKL----------------SNAAGGKNYIETVWGRGYVLRE 223
           +        ++++ + +LR+KL                +  AG +  I TV G GYV+R 
Sbjct: 200 EYGFGGRSNVVELVVSRLRRKLDEADAADAGDVAAEDSAADAGREPLIHTVRGFGYVIRP 259

Query: 224 NAK 226
            A+
Sbjct: 260 AAR 262


>gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family
           [Bacillus cellulosilyticus DSM 2522]
          Length = 224

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           M+ILL+EDDK +A  +E  L+ ++F+  +    +   ++        D  + DL L D  
Sbjct: 1   MKILLVEDDKTIASGLEYSLQQDHFDTVLCYDIQSAQKIINHEISSIDLCLFDLSLPDGS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+E+ + ++  K  TPV  L+      + V GL  GADDYI+KPF   EL++RI++++RR
Sbjct: 61  GYELCKLVKQ-KSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I   ++ +N     V   G  I +T  EY+++ + +      LT+E  L  +
Sbjct: 120 YNKQT-TIIKLHNIQINTLEGKVYKNGEEIIITALEYRLLLIFANHVGQVLTREQLLERI 178

Query: 179 YD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   D      + V+I +LR+KL +       I+TV G GY 
Sbjct: 179 WDVAGDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYK 221


>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 241

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D + +  ++   L+                   K  +FD I+LD+ +    G  
Sbjct: 7   HILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVMMPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+ +    D++ GL+ GADDY+ KPFN  EL+ARI+AI+RRS  
Sbjct: 67  VCRRLRAQGG-IPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAILRRSNR 125

Query: 122 HA-------QSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +      ++ D +T+    G  + LT  E++++ +   R    L++E 
Sbjct: 126 AEVVGGNLTGHRLAFDRWVLDTDRRTLTSADGADVALTTAEFRLLTVFLERPRFVLSREQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+       +   + +D  I +LR+K+         I TVWG GY L  + +
Sbjct: 186 LLDLTSGRAAQVFDRTVDNQISRLRRKIEADPAKPALIATVWGGGYSLAADVR 238


>gi|218441145|ref|YP_002379474.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218173873|gb|ACK72606.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 241

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 121/230 (52%), Gaps = 10/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   I    K +N+ +   + G   +E+  ++  D +ILD+ L DI G++
Sbjct: 5   KILVVEDDTVILELIFRFFKQKNYQLKTANDGRSALEIFTYFNPDLVILDINLPDIIGYD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +   +        V +L+   + EDK++G + GADDY++KPF+ +EL  R++A+++R   
Sbjct: 65  LCERM-QKSTDVYVMMLTSRINPEDKIQGFRRGADDYVTKPFDLQELEWRVKALLKRQAR 123

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S     +++V  DL+++ + + V V G  I LT  E+ ++  L+       ++   
Sbjct: 124 REVISSQTPLNVLVWKDLTIDPNRREVTVLGQGIELTALEFDLLFFLASHPGKVWSRAEL 183

Query: 175 LNHLY--DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  ++        +++++DV I ++R+K+   +     I+TV G GY   
Sbjct: 184 IEKVWKVSCSISSDLRVVDVHIGQIRRKIQAVSSRSYLIKTVRGVGYKFE 233


>gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548]
 gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548]
          Length = 229

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    N  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGINTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTE-GGLSDPIKTIRGFGYVIQE 229


>gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 226

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 132/227 (58%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGETYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             ++ ALR +    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LSIVAALRASGNKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +  ++ +   DL ++L ++ V   G  I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNNFETTLKVADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L   A
Sbjct: 181 WEYNFDPQTNVIDVHVSKLRQKI-DIGFERSLLRTIRNAGYMLTAAA 226


>gi|17227568|ref|NP_484116.1| two-component response regulator [Nostoc sp. PCC 7120]
 gi|17135050|dbj|BAB77596.1| two-component response regulator [Nostoc sp. PCC 7120]
          Length = 224

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      ++ +L    + V   + GE    L    ++D +ILD  L  I G 
Sbjct: 1   MRILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWMLPTISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R  R +  + P+ +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ RR  
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L   TVE +  ++ L+ +E +++E L    N  LT+      L++
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQIKVELSPREARLLEYLMRHPNQVLTRSQIEEALWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              EPE   + V + KLR +L        +I TV+G GY L   
Sbjct: 181 WGMEPESNALTVLVRKLRHRLQQVDAA-EWIRTVYGMGYRLNPQ 223


>gi|114800395|ref|YP_760884.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740569|gb|ABI78694.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 227

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 129/222 (58%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      ++  L  + + V     GEDG+ L    E+DAI++D+ +  + G 
Sbjct: 1   MKILIVEDEPKTIAYLQRGLTEQGYAVDTAANGEDGLHLALTGEYDAIVMDVMMPGLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR++K  TPV  L+    ++D++RGL +GADDY+ KPF+  ELVARI+AI RR R
Sbjct: 61  LVLQSLRISK-DTPVIFLTARDKVDDRLRGLGAGADDYLVKPFSFLELVARIQAITRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +LI   DL ++L ++       R++LT +E+ ++  L+ R++  ++K      ++D
Sbjct: 120 TRETTLIQVADLHIDLVSRRAIRGARRLNLTAREFSLLAALARRRSQIVSKTAIAELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +++V I +LR KL    G    + TV G GYVL 
Sbjct: 180 INFDTNTNVVEVAIKRLRSKLEE-PGEIRLLHTVRGMGYVLE 220


>gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family
           [polymorphum gilvum SL003B-26A1]
 gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family
           [Polymorphum gilvum SL003B-26A1]
          Length = 219

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   + ++  +V      +   +      +D I+LDL L D  G 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAIGSTSYDLILLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  TFLKGLRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K      LY 
Sbjct: 121 GNPNPILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V + +LRKKL     G + IET  G GY L
Sbjct: 181 FDAEVESNTIEVHVSRLRKKL-----GTSVIETERGMGYRL 216


>gi|239980291|ref|ZP_04702815.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291452155|ref|ZP_06591545.1| two-component system response regulator [Streptomyces albus J1074]
 gi|291355104|gb|EFE82006.1| two-component system response regulator [Streptomyces albus J1074]
          Length = 239

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 24/239 (10%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERVGFRVTAMPDGLSGLEAFRADRPDIALLDVMVPGMDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGH 124

Query: 119 ---------------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSL 163
                              A  L+  GDL ++ +   V   G  + LT  E +++   S 
Sbjct: 125 AAGAQGARAEEEPSGGPAEADGLLRFGDLELDTEGMVVRRAGSPVALTPTEMRLLLEFSA 184

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              T L+++  L  ++D     + +++DV + +LR K+     G+  IETV G GY LR
Sbjct: 185 APGTVLSRDKLLERVWDYGWGGDTRVVDVHVQRLRAKI-----GQERIETVRGFGYKLR 238


>gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 220

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGESALTALGGESYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|42519058|ref|NP_964988.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
 gi|41583345|gb|AAS08954.1| two-component system response regulator [Lactobacillus johnsonii
           NCC 533]
          Length = 231

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/231 (32%), Positives = 116/231 (50%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIED+++LA  I+  L+ E + V     G++G+E  +  +   I+LD  L    G  
Sbjct: 5   KILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWMLPVYDGIT 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ +L+  +   D    L  G DDY++KPF  EEL ARIR I+RR   
Sbjct: 65  VLRRIRKVS-DIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S +    L ++L +     +G  I+LT KEY ++  L        +++  L+ 
Sbjct: 124 EKRRVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           ++      +   +DV+I  LR KL      +N I+TV G GY LR+   +E
Sbjct: 184 VWGYDFVGQTNTVDVYIRALRNKLGKY---RNLIKTVRGYGYCLRKVDDNE 231


>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
 gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Magnetospirillum
           magneticum AMB-1]
          Length = 228

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L +  + V   + G  G++  +    D +ILDLGL D+ G E
Sbjct: 3   RILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMDGQE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           ++ A+R      P+ +LS  +   DKV  L  GA+DY++KPF   EL+AR+RA++R    
Sbjct: 63  IISAVRQD-CDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLRPHLP 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++ +G L ++LD   V   G  IHL+ KE+ ++   +   +  LT +  L  ++ 
Sbjct: 122 KEGGQVVESGSLKIDLDRLVVRKAGSEIHLSRKEWDLLAFFARHPDHVLTHKHILKGVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                +   + V++ +LR+KL +       I T  G GY LR + +
Sbjct: 182 PAHVDDTAYLRVYVNQLRQKLEDDPARPRLIVTDPGVGYRLRSDPQ 227


>gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 216

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 117/220 (53%), Gaps = 8/220 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +   I+L L    +       GE+G++     + D ++LD+ L    G+ +
Sbjct: 4   ILIIEDEDPIRELIKLNLVMAGYETLEACDGEEGLQYLNNEKIDLVLLDVMLPQQDGYTL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  +   K + P  +L+    ++DKV+GL+ GADDY++KPF   EL+AR++ ++RRS   
Sbjct: 64  LPKI--LKKNIPTIMLTAKDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSDKE 121

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            ++ IV  D+ + LD   V   G  + LT KE+ ++ LL   K   ++++  L  ++   
Sbjct: 122 -KTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWGYE 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            E   + +D+ I +LR K+         I+T++  GY + 
Sbjct: 181 FEGNTRTVDMHIQRLRNKIGADK-----IKTIYKVGYRME 215


>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 229

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|92116995|ref|YP_576724.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91799889|gb|ABE62264.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 230

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IEDD+  A  +    +       +   GE+G+ L    ++D +++D  L    G 
Sbjct: 1   MRLLIIEDDRESADYLVKAFREVGHVAELASDGEEGLSLADGGDYDVLVIDRMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+ +LR     TPV ILS +  ++D+++GL++G DDY+ KP+   EL+AR+  + RR  
Sbjct: 61  SVIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRRG 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A+  +   GDL ++  +  V      + L  +E++++E L       +T+ M L +++
Sbjct: 121 GPAEETVYRVGDLELDRLSHRVVRGEEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P+  +IDV I +LR K+         + T+ G GY++R+
Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERP-LLHTIRGAGYMIRD 223


>gi|331004256|ref|ZP_08327734.1| hypothetical protein HMPREF0491_02596 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411421|gb|EGG90833.1| hypothetical protein HMPREF0491_02596 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 229

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+ ++A      L+   F V ++  G++G+E     +++ ++LDL L  + G+E
Sbjct: 3   KVLIIEDEVSIAELERDYLEISGFEVDISTNGKEGLERALSEDYELLLLDLMLPGMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R  K   P+ ++S   +  DK+RGL  GADDY++KPF+  ELVAR++A + R   
Sbjct: 63  ICKQVRAVK-EIPIIMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHIGRYDR 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            A      + +I   DL ++  ++ V   G+   LT KE+ ++  L+   N   +KE   
Sbjct: 122 LAGVAASDKDIIEIRDLKIDAGSRRVWGYGNEKTLTAKEFDILYFLAKHPNKVYSKEDLF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++      ++  + V I  +R+K+   +    +IET+WG GY LR
Sbjct: 182 KEVWGLESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRLR 228


>gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
 gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1]
          Length = 220

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + +++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQHDYDCILLDRGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIRA +R+  
Sbjct: 61  KVLTTIRYKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+     G + I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKI-----GSSCIKTIRGLGYRM 216


>gi|225631101|ref|ZP_03787828.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591203|gb|EEH12358.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 256

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 124/233 (53%), Positives = 164/233 (70%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE---FDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D            +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDYYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S++  K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK T LTKEMFLN
Sbjct: 121 RRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLN 180

Query: 177 HLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP    I+DVF+CKLRKKL +A  GK++IETVWGRGYVL+E   D+
Sbjct: 181 HLYNGLDEPSNNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYIDDD 233


>gi|172038472|ref|YP_001804973.1| two-component response regulator [Cyanothece sp. ATCC 51142]
 gi|171699926|gb|ACB52907.1| two-component response regulator [Cyanothece sp. ATCC 51142]
          Length = 609

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 126/228 (55%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD+  +  +  +L+S +F V V   G++G+E    +++D IILDL L  I G 
Sbjct: 1   MKILLIEDDQLTSEYLAAVLESHHFIVDVVFNGQEGLEYANLWDYDVIILDLQLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR+ K  TP+ IL+     +    GL +GADDY+ KP +  +L+ARIRA+ RR  
Sbjct: 61  SLCRQLRMKKKQTPILILTACQETDKISIGLDAGADDYVLKPCDPPQLIARIRALTRRGY 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  G LS+NL +  V  Q   ++L  +EY ++EL         ++ + ++HL+
Sbjct: 121 NISSSSVLTWGLLSLNLVSAQVTYQKQEVNLRNQEYHLLELFLRHPQRIFSRSLIIDHLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  D P    +   +  LR KL  A   ++  ET++G GY L     D
Sbjct: 181 EVGDVPSESAVTNLVKDLRNKLKAAGMEEDIFETIYGLGYRLNPVPTD 228



 Score = 99.6 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++++DD  +  +I  +L    F +          ++      D +ILDL +  I G E+
Sbjct: 492 IMIMDDDSTIVTAIRNILHPWGFQITGLSQVNQFWKILTQTNPDLLILDLEMPTINGIEL 551

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            R +R  K     P+ I++  +  +   +  ++GA+D++ KP    ELVAR+   ++
Sbjct: 552 CRVVRQDKQYAKLPIIIVTAHTETKYLQQSFEAGANDFLGKPIIPSELVARVFNQIK 608



 Score = 34.8 bits (80), Expect = 9.8,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 37/69 (53%)

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR ++    S P+ +++   ++  +++ ++ G + Y+ +P + ++++  I  ++  S   
Sbjct: 429 LREIQEKFPSVPILMIAEQDNLNHRLKAVRYGIEKYLIEPVSSQDILEIINTLLFPSFSS 488

Query: 123 AQSLIVTGD 131
             ++++  D
Sbjct: 489 QTNIMIMDD 497


>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
 gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
           [Bacillus coagulans 36D1]
          Length = 225

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+ +L  S++ ML+ E F V     GE+ + L +   FD I+LD+ L ++ GF
Sbjct: 1   MKLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  ++ TPV  ++   S+ED+V GL+ G DDYI KPF   EL ARIRA +RRS 
Sbjct: 60  SILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSG 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +    + +    K ++V G  + LT  +Y+++E L       LT+E   + ++
Sbjct: 120 NMTIDHTLRYRGIELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +  + I++V+I  LRKKL      K+ I+ V G GY+L+E  K
Sbjct: 180 GFESDTTIAIVEVYIHHLRKKLEPFGYHKD-IQNVRGIGYLLKEPDK 225


>gi|71083864|ref|YP_266584.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062977|gb|AAZ21980.1| phosphate regulatory protein [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 226

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED++ +   ++  L+ E + V  +D G +GIE  K    D ++LD  L D  G E+
Sbjct: 5   IHIVEDEQPIITLVKYNLEKEGYKVSSSDNGNEGIEDIKKLFPDLVLLDWMLPDFSGVEI 64

Query: 63  LRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + L+  K     P+ +L+     EDK++GL SGADDYI+KPF+  EL+ARI+A++RRS+
Sbjct: 65  CKILKKEKKFKEIPIIMLTAKGEDEDKIKGLNSGADDYITKPFSFPELLARIKALLRRSK 124

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++   DL V+   + V  +   IHL  KEY +I           +++  L +++
Sbjct: 125 PSLVSDIVEFEDLKVDRLTRRVFRKNKEIHLGPKEYDLINFFIKNPKRVYSRDQILENVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E + +DV I +LR+ ++   G K  I TV   GY L
Sbjct: 185 SDNINVETRTVDVHIRRLRQSINID-GFKELIRTVRSAGYSL 225


>gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
 gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae
           F3047]
 gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116]
          Length = 220

 Score =  249 bits (637), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 125/221 (56%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  + + +++ L +  F V     G+ G+       +DA++LDL L  + G 
Sbjct: 1   MRILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R      PV IL+   +++++V+ LQSGADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  EVLQQWRSNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRR-Y 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+  S+I    + ++ + ++V +    I LT +EY+++EL  L K+  L++      L  
Sbjct: 120 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     +DV I  LR+KL     GK +I T+ G GY L
Sbjct: 180 WDEEISSGALDVHIYNLRQKL-----GKQFIRTIHGVGYAL 215


>gi|182435453|ref|YP_001823172.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776090|ref|ZP_08235355.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178463969|dbj|BAG18489.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656423|gb|EGE41269.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 231

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 8/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + LK+  + V     G   ++L      D ++LDLGL D+ G E
Sbjct: 3   RVLVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGLPDMDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      P+ +LS   + ++KV  L +GADDY++KPF  +EL+AR+RA VRR+  
Sbjct: 63  VIRGLR-GWTRVPILVLSARHTSDEKVEALDAGADDYVTKPFGMDELLARLRASVRRAEP 121

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         + T   +V+L AK V   G  + LT  E+ ++E+L       ++++  
Sbjct: 122 VGQEGGAEDIALVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNGGRLVSQKQL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      E   + V++ +LR+KL        +  T  G GY   
Sbjct: 182 LQEVWGPSYGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 229


>gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
 gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA
           [Pseudomonas aeruginosa LESB58]
          Length = 221

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   I   L+ E   V     G          EFD ++LD+GL    G 
Sbjct: 1   MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR     TPV +L+    + D+V GL SGADDY++KPF  +EL AR+RA+ RR+ 
Sbjct: 61  DILRNLRHQGRLTPVLLLTARDKVADRVAGLDSGADDYLTKPFYLDELQARVRALTRRTT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +V G+L ++     V + G  + L  +EY ++ LL       L++      LY 
Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQAVELAPREYALLRLLLENSGKVLSRNQLEQSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + E   I+V +  LR+KL N       I TV G GY + + A 
Sbjct: 181 WSGDVESNAIEVHVHHLRRKLGN-----QLIRTVRGIGYGIDQPAP 221


>gi|302184853|ref|ZP_07261526.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
          Length = 245

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L++    V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  +   D + GL +GADD++ KP +   L+ARI+A++RRS  
Sbjct: 67  ICRRVR-DRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 236

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 26  LERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 205

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL    GG   + TV G G+VLR
Sbjct: 206 FIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 234


>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL ED+  +A  IE  LK    +V V   G  G  + +   FD +ILD+ +  I G E
Sbjct: 3   KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    R       PV +L+ + + ED V+GL +GADDY+ KPF+ +EL ARI+A++RR++
Sbjct: 63  LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   +L ++ + +  +     I LT KEY+++E     +   L++   L  ++D
Sbjct: 123 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    I+DV++  LR K+      K  I TV G GY++
Sbjct: 183 KNFDTNTNIVDVYVNYLRVKIDRDF-DKKLIHTVVGLGYIM 222


>gi|238922448|ref|YP_002935961.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|238874120|gb|ACR73827.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
 gi|291526222|emb|CBK91809.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291526732|emb|CBK92318.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 112/230 (48%), Gaps = 7/230 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DDK +  +IE+ L  E ++V     G   +E+ K  + D +I+D+ +  + G 
Sbjct: 1   MTILVCDDDKEIVEAIEIYLMQEGYDVEKAYDGIQAVEIMKNKKIDLMIIDVMMPKLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
                +R      P+ ILS  +   DK+ GL  GADDY++KPFN  ELVAR+++ +RR  
Sbjct: 61  RATLQIRKES-RVPIIILSAKTEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYT 119

Query: 121 GHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             + +          G L VN D K V V G  + LT  EY ++ LL   K    +    
Sbjct: 120 TLSSNDAAGDKVYEAGGLLVNDDLKKVTVDGEEVKLTPIEYNILLLLLKNKGKVYSINEI 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +++         + V I  +R+K+        Y++ VWG GY + +N
Sbjct: 180 YESIWNEEAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEDN 229


>gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
 gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA
           [Mycobacterium marinum M]
          Length = 236

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 26  LERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 205

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL    GG   + TV G G+VLR
Sbjct: 206 FIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 234


>gi|15807318|ref|NP_296048.1| response regulator [Deinococcus radiodurans R1]
 gi|6460139|gb|AAF11874.1|AE002064_5 response regulator [Deinococcus radiodurans R1]
          Length = 220

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 120/222 (54%), Gaps = 7/222 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A      L+   + V     G +G+E     EF  ++LD+ L  + GF
Sbjct: 1   MRLLLVEDDPRIAEPTAAALREAGYAVTWAQTGPEGLEAAMLGEFPLVVLDVMLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   LR A++ +P+  L+    + D+V+GL  G D Y+ KPF   EL+A++RA+ RR R
Sbjct: 61  EIAGQLREAEVDSPILFLTARGEVSDRVQGLDLGGDAYLVKPFAMPELLAQLRALTRRER 120

Query: 121 GHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +   +    G   ++  A+TV   G  + +TG+EY+++  L+L     LT+E  L+ +
Sbjct: 121 GQSAPRVSFAGGRGGLDTVARTVTWDGQEVAVTGREYELLSALALAPERWLTREELLDRV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +      E +I+DV++  LR+KL         I +  GRGY 
Sbjct: 181 WGPEFGGEARIVDVYVRYLRRKL-----APEAISSERGRGYR 217


>gi|297157930|gb|ADI07642.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D
Sbjct: 123 ETQAQQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K +D+ I  LRKKL + A    YI TV G G+   ++
Sbjct: 183 TTWWSSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKS 226


>gi|295133222|ref|YP_003583898.1| two component transcriptional regulator winged helix family
           [Zunongwangia profunda SM-A87]
 gi|294981237|gb|ADF51702.1| two component transcriptional regulator, winged helix family
           [Zunongwangia profunda SM-A87]
          Length = 225

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   +++ L+S ++ V+     ++GI L   Y  D I+LD+GL D  G +
Sbjct: 5   KILIIDDEPQIRKLLQINLESNDYKVFEAGTAKEGILLAARYTPDLILLDIGLPDKNGHQ 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ LR    + P+ ILS   +  D V  L +GA DY++KPF   EL+ARIR+ +R S+ 
Sbjct: 65  VLQELRQWFNN-PILILSVQDNEADIVSALDNGATDYLTKPFRTGELLARIRSAIRNSQN 123

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + I  TGD+S++  A+ ++V+ H I LT  EY+++ LL+  +   LT    L  ++ 
Sbjct: 124 TDNNAILTTGDISIDFVARIIKVREHIIKLTSTEYELLFLLARNEGKVLTHHYLLRKVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E + + VFI  LRKK+        +I T  G GY  +
Sbjct: 184 PSFQLETQYLRVFIGNLRKKIEANPNHPKHIITESGIGYRFQ 225


>gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 237

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++ED+K ++  ++  L  + ++V+    G   +E+    + D +ILDL L  + G 
Sbjct: 4   INILIVEDEKTISDIVKNYLIKDGYHVFQAFDGVKALEIFNEEQIDLVILDLMLPMLSGE 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K   PV I S      D+++GL+ GADDY++KPF+ +ELV R++A++RR  
Sbjct: 64  EVLKDIR-NKSQVPVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIE 122

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +            G L ++L        G  I LT  E+ +++ L    N   T++  +
Sbjct: 123 KYNIPRADIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEII 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +    +   + ID  I  +R+K+ +      YI+T++G GY 
Sbjct: 183 ELTFGLDYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227


>gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 235

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE F+V V   G+  +        D ++LD+ +  + G EV
Sbjct: 5   IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDIKMPIMDGMEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR   +  PV  L+      D+  GL SGADDYI+KPF+   L+ARIRA++RR+   
Sbjct: 65  LRRLREKSM-VPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEAR 123

Query: 121 --------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +IV G L ++ D   V   G  I LT  E+ ++E L+ R     +++
Sbjct: 124 FQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  Y      + + ID  I +LR+K          IET++G GY   E 
Sbjct: 184 QLMDTAYQDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRFAEE 235


>gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC
           BAA-613]
          Length = 222

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/220 (35%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +A ++ L+LK E F        E+ +E  +   FD ++LDL L D  G+ 
Sbjct: 3   RILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLMLPDGNGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A++      PV  L+ M   E  V G + GADDYI+KPF   ELV+R++ ++RR RG
Sbjct: 63  VCTAIKRE-ADIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRR-RG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            ++S++  GDL V+    TV   G  I L+  EY++  +   R+   LT+   L  ++D 
Sbjct: 121 RSRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDI 180

Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D      + V+I +LR K+         IETV GRGY 
Sbjct: 181 AGDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGYK 220


>gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 221

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V     G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRARLTRLGHAVDHETDGATANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRRKL---HGSSVEIRTARGMGYQI 218


>gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 239

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  I+ ML+   +        +D  E+    + D I+LD+ L D  GF  
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPDGTGFSF 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+   S  +S +DKV GL  G DDYI+KP++ +EL++RIR+I+RR+ G 
Sbjct: 71  CKELRHTS-QVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGV 129

Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +            ++ +N  A+TV      + +  KE+ ++  ++  +   LTKE  +
Sbjct: 130 DDNKSEMLTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIM 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++    + E   + V +  LR+KL         I TVWG GYVL ++
Sbjct: 190 SAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVLGDS 238


>gi|160897159|ref|YP_001562741.1| two component heavy metal response transcriptional regulator
           [Delftia acidovorans SPH-1]
 gi|160362743|gb|ABX34356.1| two component heavy metal response transcriptional regulator,
           winged helix family [Delftia acidovorans SPH-1]
          Length = 227

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD+ L   +   L  E F V     G  G+      +FD IILD  L  I G 
Sbjct: 1   MRILIIEDDEKLVDQLVRGLDDEGFTVDFALDGISGLNKAATQDFDVIILDGMLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            VL ALR +K  T V +L+   S+ED+V GL+SGADDY+ KPF   ELVARI+ ++RR  
Sbjct: 61  AVLAALRQSK-QTAVLMLTARDSVEDRVTGLKSGADDYMVKPFAFSELVARIKVLLRRNP 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S  +  +++   DL ++L  +     G ++ L+ KEY ++ LL  R+   +++    
Sbjct: 120 SLSSAVNVATILRMHDLEIDLARQRAFRAGKKLDLSAKEYSLLILLIRRQGEVISRAELA 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++    E E  +++V I +LR K+ +    K  + T+ G GY+L 
Sbjct: 180 SQVWSINFESESNVVEVAIRRLRMKI-DEPFDKPLLHTIRGMGYILE 225


>gi|116255578|ref|YP_771411.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115260226|emb|CAK03330.1| putative Kdp operon transcriptional regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V          +       D I+LDLGL D PG +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVQEAPNASAARQSVTDDMPDLIVLDLGLPDTPGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G+ I L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVDGNEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V++ +LR+K+       +YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLREP 229


>gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +++IED+  +   +   L+     V       +  +       DA++LD  L    G  
Sbjct: 3   HVVVIEDEATVREVLRFHLERAGLTVSAYAAVAEAEDALAGA--DALVLDWMLPGESGLG 60

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +LR LR        PV +L+  ++  ++V GL++GADDY++KPF   ELVAR+RA++RR+
Sbjct: 61  LLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVRALLRRT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      +  G L ++L A    + G R+ LT +E+ ++  L+       ++   L+ ++
Sbjct: 121 QPEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQNAGRVYSRTELLDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                   + +D  + +LR  L +A G   ++ETV GRGY +R    +E
Sbjct: 181 GADFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRMRSWEGEE 229


>gi|166032567|ref|ZP_02235396.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
           27755]
 gi|166026924|gb|EDR45681.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
           27755]
          Length = 231

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+ ++  ++ + LK E+  V   D G   +++ K   FD I+LD+ + D  GF +
Sbjct: 6   VLIIDDEPSILKAVSMTLKQEHIAVTCADNGALALDILKANTFDLILLDIIMPDQDGFSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R ++  TPV +LSG      +V+GL+ GADDYI+KPF+K  LV++IRA+VRR    
Sbjct: 66  LKVIRSSQNYTPVILLSGRGEDSAQVKGLELGADDYITKPFSKTVLVSKIRAMVRRTNQY 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S   A + +  G  ++ ++++TV   G  I LT KE+ ++ L         +K+   +
Sbjct: 126 VLSSDEAITEVKKGSFTLRMESQTVLKNGKEISLTSKEFSLLYLFIENPEYIFSKQELFS 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   D  +   I V+I KLR KL +      +I TVWG+GY  
Sbjct: 186 KVW-RSDNCDDSTILVYIKKLRDKLEDDPSHPTHICTVWGKGYKF 229


>gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71]
          Length = 219

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  +   
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDSR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV  L+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
 gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family
           [Delftia acidovorans SPH-1]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 120/226 (53%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   L+     V     G     L +  EFDA +LDLGL    G 
Sbjct: 1   MRILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGLPVRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLRA R      PV IL+   +  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  R    +++     H+Y 
Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   I+VF+ +LRKKL   +     IETV G GY L E A 
Sbjct: 181 QDSDRDSNTIEVFVGRLRKKLPAGS-----IETVRGLGYRLVEGAP 221


>gi|39997243|ref|NP_953194.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
 gi|39984133|gb|AAR35521.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  +A      L++    V     G D ++  +      ++LDL L D+ G  V
Sbjct: 5   ILLVEDDAGIAEVALAYLENAGLKVVHVTTGRDALDNSRAESPLLVVLDLMLPDLSGEAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L+      PV I++  +S E+++ G   GADDY+ KPF+  ELVAR++A+++R+  +
Sbjct: 65  CRELKET-ADIPVVIITAKASEEERLAGFALGADDYVVKPFSPRELVARVQAVLKRAGKN 123

Query: 123 AQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           A          G+L V+    TV  +G  + LT  E++++  L+ R   T T+E  ++  
Sbjct: 124 ADGGKRLSFNRGELVVDDRNYTVTCRGTSVKLTAVEFKVLHTLAARPQKTFTREELVDRA 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E   + ID  I  +R KLS++     Y+ TV+G GY  
Sbjct: 184 MGYQFEGYERNIDSHIKNIRHKLSDSPKAPTYVITVYGLGYRF 226


>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
 gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinomonas sp. MED121]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 119/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL +DD  L+  I+     E + V     G + ++L      D +ILD+ + ++ GFE
Sbjct: 3   KLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVMMPELDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K   PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR+  
Sbjct: 63  TLKLIRA-KSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRAAN 121

Query: 122 HAQSLIVT----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +  + T    G+L +    ++V ++G  I LT  EY ++E +       LTK+     
Sbjct: 122 DKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     + +D+ I  LRKK+     G+  I+TV G GY+  + 
Sbjct: 182 ALGRKLTMYDRSLDMHISNLRKKVGTLINGEPRIKTVRGVGYIFVDQ 228


>gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
 gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
           ATCC 29473]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 123/229 (53%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FN+ V   GE  + L      D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLLD-NSIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ--------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           + Q          +    L +N   +    +G  + LTG E+ ++ LL+      +++E 
Sbjct: 121 NEQQQNVDQGAPTLEVDCLQLNPGRQEASFEGQVLDLTGTEFTLLYLLAQHLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +   R  P  + ID+ I  LR+KL     G ++ +T+ GRGY++ 
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERRDGLSWFKTLRGRGYLMV 229


>gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ +   +  ++    +       G + +       +D +++DL L  + G +
Sbjct: 6   RILIIEDDEDINRLLCNIVSKSGYTPKSAYSGTEAMIYLDSERWDMVLIDLMLPGLSGED 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +   +   P+ I+S     + K+  L++GADDYI+KPF+ EE+ ARI + +RR R 
Sbjct: 66  ILK-IVTKESDVPIIIISAKLETQSKIAALRAGADDYITKPFDIEEVSARIDSCLRRYRD 124

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  +L+   D+ ++ DAK V V G+ + LT +EY+++ LL    N   TK      
Sbjct: 125 IPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREYEILLLLMSSPNKVFTKANLFES 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++     +   I+V +  +R KLS A   + YIETVWG GY L+
Sbjct: 185 VWNEPFYGDDNTINVHLSNIRNKLSKANPNEVYIETVWGMGYKLK 229


>gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 228

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD  LA  +E  L    + V V   G    E L      D  +LD  L  + G
Sbjct: 1   MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVALLDWMLPGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R LR   ++ P+ +L+    + D+V GL +GADDY+ KPF+ +EL+AR+RA+ RR 
Sbjct: 61  VTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL V+  A+ V   G  I L+ +E+ ++ LL       +++ M L+ ++
Sbjct: 121 SLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  +    +IDV +  +R K+ +   G   I T+ G GY 
Sbjct: 181 DGETDLRSNVIDVHLAAIRAKI-DKPFGTETITTLRGVGYR 220


>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
 gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [marine gamma proteobacterium HTCC2207]
          Length = 219

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD +LA ++   L+ +N+ V     G + + + +  + D  ILDLGL D+ G 
Sbjct: 1   MHILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+  R ++    + IL+  S  E+K+ GL SGADDY++KPF  +EL+AR+R + RR  
Sbjct: 61  EVLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  GD+ ++     V + G  + L+ +EY ++  L        T+ +  N LY 
Sbjct: 121 SAKTSLVAVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E     ++V I  LRKKL +      +I+TV G GY 
Sbjct: 181 WGEEVSSNALEVHIHNLRKKLGSD-----FIKTVRGVGYR 215


>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
 gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 112/228 (49%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   A    YI TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGN 228


>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 242

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGF 60
           ILL+ED++ L+  +   L+ EN+ + +   G+  ++  +    + + IILD  L  + G 
Sbjct: 16  ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      P+ +++    + DKV GL +GADDYI+KPF  EEL+ARIR ++R S+
Sbjct: 76  EVLRRIRQ-NDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQ 134

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A S       DL++N  ++ V      I LT +EY+++  L      T+T++  LN +
Sbjct: 135 NQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLV 194

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +  ++DV+I  LR K+      K  I TV G GYVL  N
Sbjct: 195 WGVDFEGQPNVVDVYIRYLRNKVDRNFK-KTLIHTVRGVGYVLSAN 239


>gi|146284354|ref|YP_001174507.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
 gi|145572559|gb|ABP81665.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri
           A1501]
          Length = 271

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   LA S+   L+   + V +   G          ++   ILD+GL  + GF
Sbjct: 49  MRILLVEDHPQLAESVAQALRGAGWTVDLLHDGIAADLALASEDYALAILDVGLPRLDGF 108

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    + PV +L+    + D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 109 QVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 168

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +     G L  +LDA+   +    + LT +E  ++E L  R    ++K+     ++ 
Sbjct: 169 GGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFG 228

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++     I++++ +LRKKL    G    I T  G GY+L 
Sbjct: 229 LDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYMLE 267


>gi|18311081|ref|NP_563015.1| two-component response regulator [Clostridium perfringens str. 13]
 gi|5103040|dbj|BAA78773.1| Response regulator protein VirI [Clostridium perfringens]
 gi|18145764|dbj|BAB81805.1| two-component response regulator [Clostridium perfringens str. 13]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 121/229 (52%), Gaps = 14/229 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  + + +      E F V   D G  GI++ K +    +ILDL L DI GF+
Sbjct: 4   KILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDISGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R L   K++  + +L+    I DKV GL+ GADDYI+KPF+  E VAR++  +RR   
Sbjct: 64  VCREL--NKLNANIIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRRKDK 121

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++   +   + G + +   ++ V +    I L  KE +++       N +L+++ 
Sbjct: 122 FLKESNKIKVKDEFIIGPIKIKRQSRKVYLNEEEIRLKPKEIELLLYFLDNPNISLSRDQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L+ ++      + + +DV + +LR+KL      +  IET++G GY+ +
Sbjct: 182 ILDGVWGEEYFGDFRTVDVHVRRLRQKL----NNEEIIETIFGLGYMFK 226


>gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
 gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM
           15053]
          Length = 225

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ LA  +   L    ++V     G+D +   +  E   ++LD+ L  + GF V
Sbjct: 4   ILLVEDNEELAGLLRDFLVDRGYSVLRAARGDDAVRYAERGEVRLVLLDIMLPGMDGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
            R +R ++ + PV I+S  S  ++K+ G + GADDY+ KP + E L A++ A+++RS R 
Sbjct: 64  CRQIRKSQ-NVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKRSGRA 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L+V+G++++N  A+TV ++G  + L  KEY+++ L       TL KE    +++  
Sbjct: 123 QEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVWGT 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + + V I  LR K+         I TVWG GY   E
Sbjct: 183 DSFSESQTLTVHIKMLRAKIEENPREPKRILTVWGVGYRYEE 224


>gi|302544863|ref|ZP_07297205.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462481|gb|EFL25574.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
           ATCC 53653]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 119/224 (53%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD +++  +   L+ E + V V + G   ++       D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLLVLDLGLPGMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV +L+  +   D V GL +GADDY++KPF   EL+AR+RA++RR   
Sbjct: 63  VCRRLRTEGHGFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q+    T  + +++++    +    + LT KE+ ++ +L       +T++  +  ++D
Sbjct: 123 ETQAQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  K +D+ I  LRKKL + AG   YI TV G G+   ++
Sbjct: 183 TTWWSSTKTLDMHISWLRKKLGDDAGNPRYIATVRGVGFRFEKS 226


>gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/222 (35%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+  LA ++  +L+   +       G  G++      +D IILD+ L  + G 
Sbjct: 1   MNLLVIEDEVRLAEALVQILQKNKYAALAAYDGITGLDHALTGIYDVIILDIMLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI-VRRS 119
           EVL+ LR  KI TPV +L+    + D+V+GL  GADDY++KPF  +EL+ARIRA+  RR 
Sbjct: 61  EVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +   D+S+NL    +      + L  KE++++E L       ++KE  L  ++
Sbjct: 121 ELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E E   ++V+I  LRKKLS     K  I+TV G GY L
Sbjct: 181 GFDSEAEYNHVEVYISFLRKKLS-HIHSKVGIQTVRGVGYRL 221


>gi|56414448|ref|YP_151523.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197363369|ref|YP_002143006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
 gi|56128705|gb|AAV78211.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
 gi|197094846|emb|CAR60379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. AKU_12601]
          Length = 213

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 4/210 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA--KIS 72
            +  +L+   F     +  +  +        D I+LD  L    G + ++ L+       
Sbjct: 1   MVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQFIKHLKREAMTRD 60

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-QSLIVTGD 131
            PV +L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR    A + +I    
Sbjct: 61  IPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQG 120

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           LS++  +  V      + +   E++++           ++E  LNH++      E + +D
Sbjct: 121 LSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVD 180

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           V I +LRK L   +G    ++TV G GY  
Sbjct: 181 VHIRRLRKALE-HSGHDRMVQTVRGTGYRF 209


>gi|22125379|ref|NP_668802.1| two-component transcriptional regulator [Yersinia pestis KIM 10]
 gi|45442400|ref|NP_993939.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597038|ref|YP_071229.1| two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108808182|ref|YP_652098.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|108811547|ref|YP_647314.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|145599382|ref|YP_001163458.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149365137|ref|ZP_01887172.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162419859|ref|YP_001607146.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165926850|ref|ZP_02222682.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936048|ref|ZP_02224618.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011209|ref|ZP_02232107.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212464|ref|ZP_02238499.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398895|ref|ZP_02304419.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422720|ref|ZP_02314473.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424434|ref|ZP_02316187.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170023666|ref|YP_001720171.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186896121|ref|YP_001873233.1| two component transcriptional regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930047|ref|YP_002347922.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|229838590|ref|ZP_04458749.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229895658|ref|ZP_04510829.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|229899156|ref|ZP_04514299.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901816|ref|ZP_04516938.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|270490006|ref|ZP_06207080.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294504751|ref|YP_003568813.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|21958263|gb|AAM85053.1|AE013751_5 transcriptional regulator in 2-component system [Yersinia pestis
           KIM 10]
 gi|45437265|gb|AAS62816.1| putative two-component system response regulator [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51590320|emb|CAH21957.1| putative two-component system response regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108775195|gb|ABG17714.1| two-component system response regulator [Yersinia pestis Nepal516]
 gi|108780095|gb|ABG14153.1| putative two-component system response regulator [Yersinia pestis
           Antiqua]
 gi|115348658|emb|CAL21602.1| putative two-component system response regulator [Yersinia pestis
           CO92]
 gi|145211078|gb|ABP40485.1| two-component system response regulator [Yersinia pestis Pestoides
           F]
 gi|149291550|gb|EDM41624.1| putative two-component system response regulator [Yersinia pestis
           CA88-4125]
 gi|162352674|gb|ABX86622.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
 gi|165916193|gb|EDR34800.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921201|gb|EDR38425.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989887|gb|EDR42188.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206395|gb|EDR50875.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958427|gb|EDR55448.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051399|gb|EDR62807.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056316|gb|EDR66085.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750200|gb|ACA67718.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis YPIII]
 gi|186699147|gb|ACC89776.1| two component transcriptional regulator, winged helix family
           [Yersinia pseudotuberculosis PB1/+]
 gi|229681745|gb|EEO77839.1| putative two-component system response regulator [Yersinia pestis
           Nepal516]
 gi|229687558|gb|EEO79631.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229694956|gb|EEO85003.1| putative two-component system response regulator [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701464|gb|EEO89492.1| putative two-component system response regulator [Yersinia pestis
           Pestoides A]
 gi|262362813|gb|ACY59534.1| putative two-component system response regulator [Yersinia pestis
           D106004]
 gi|262366737|gb|ACY63294.1| putative two-component system response regulator [Yersinia pestis
           D182038]
 gi|270338510|gb|EFA49287.1| response regulator receiver domain protein [Yersinia pestis KIM
           D27]
 gi|294355210|gb|ADE65551.1| putative two-component system response regulator [Yersinia pestis
           Z176003]
 gi|320014446|gb|ADV98017.1| putative two-component system response regulator [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 227

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   ++  L  E F       G+ GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +I  G L++N   ++ E QG    LT  E+ ++ELL       +TK+  
Sbjct: 120 EQPTLSSIDSGIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNHLNIETVRSIGYRIR 227


>gi|257468982|ref|ZP_05633076.1| transcriptional regulatory protein [Fusobacterium ulcerans ATCC
           49185]
 gi|317063230|ref|ZP_07927715.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185]
 gi|313688906|gb|EFS25741.1| signal transduction regulator [Fusobacterium ulcerans ATCC 49185]
          Length = 239

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 16/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  +   ++L L+   + V+ TD G + + L +    + I+LDL L  + G +
Sbjct: 4   KILIIDDEIHILELLKLNLEIYGYEVFTTDTGNNVMSLIEKINPNIILLDLMLPGMNGID 63

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R         + I+S  S   DK+  L+ GADDYI+KPF+  E++ARI A  RR 
Sbjct: 64  ICKKIRNNPLLNKIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREMIARINAFSRRI 123

Query: 120 RGHAQ------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
              +             + I   DL ++L    V    + + LT +E+++   L   K  
Sbjct: 124 ESDSTIISNDSPVKSNANYIYYKDLKIDLVKNLVYKNNNPLELTIREFKLFIFLLNNKGK 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++E     +++  +  + + +DV I KLR+KL +     +YIET+ G GY + +N
Sbjct: 184 VISREKIFESVWNYENNNQTRSLDVHIRKLRQKLGDE--NNSYIETIRGTGYKIPDN 238


>gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
 gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family
           [Dyadobacter fermentans DSM 18053]
          Length = 236

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 113/225 (50%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  +   +E  L  E ++V     G+  I++ K +  D I+LD+ +  + G E
Sbjct: 12  KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R LR      +T +  L+  S    +V   + GADDYI+KP     L++RI A+ RR 
Sbjct: 72  TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRRE 131

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              A+S   I   DLS+N    TV   G +   L  KE++++  L+   N   +++  L 
Sbjct: 132 AQKAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDELLQ 191

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++        + +DV I KLR+KL +      YI+T+ G GY+ 
Sbjct: 192 KIWGADIYVLERTVDVHIRKLREKLGDT-----YIKTLKGVGYMF 231


>gi|182419345|ref|ZP_02950597.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237666330|ref|ZP_04526315.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376676|gb|EDT74248.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237657529|gb|EEP55084.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 230

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+K +  +IE+ L+ EN NV   + G   +++ +  +   IILD+ +  + G   
Sbjct: 4   VLVVDDEKEIRDAIEIYLRGENLNVLKAEDGLKALDILEEEKVHLIILDVMMPKLDGIRT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R    + P+ +LS      DK+ GL  GADDYI+KPFN  ELVAR+++ +RR    
Sbjct: 64  CLKIRET-ENLPIIMLSAKGEDSDKILGLNVGADDYITKPFNHLELVARVKSQLRRYEKP 122

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +I   DL ++  AK + V+G  I  T  EY+++ LL+       + +     
Sbjct: 123 LNVEEGKDIIKVKDLVIDTIAKKITVRGEEIKATATEYKILHLLASNLGKVFSIKEIYEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++         + V I ++R+K+        YI+ VWG GY + + 
Sbjct: 183 VWEEIFYKSENTVTVHIRRIREKIEINTKEPEYIKVVWGIGYKIEKE 229


>gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IED+  LA  +   L+   +  +  D G+  +   K  + D ++LDL L  + G E
Sbjct: 3   KVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDGVE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +++  +   D++ GL+ GADDY+ KPF+  E+VAR++A +RR   
Sbjct: 63  ICKQVRQFSG-VPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVEL 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T    +++D      +G  I LT  E+Q+++LL         +++ +  +Y  
Sbjct: 122 DQAESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYAD 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + ID  I KLRKK+S  A   N I +V+G GY    N
Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01]
 gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01]
          Length = 217

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 136/223 (60%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  +   ++  L+++ + V      E+ + L + + +D ++LD+ L  + GF
Sbjct: 1   MRLLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVMLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L ALR      PV +L+   + EDKVRGL+ GADDY++KPF+  EL AR+RA++RR+ 
Sbjct: 61  TFLEALRRQH-KLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAH 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G L+++L+ K V  +G  + L+G+EY ++E L+L       +E+ L  ++ 
Sbjct: 120 GEAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVWA 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +  + K++DV+I +LR+KL   A     IET  G GY  RE
Sbjct: 180 GEEGVDPKVVDVYIYRLRQKLGQGA-----IETERGLGYSFRE 217


>gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7]
 gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++EDD+ +   I L L S  + V   D   D +           I DL L  + G +
Sbjct: 6   RIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMSGID 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS      DKV GL SG+DDY++KPF   EL AR+R+++RR   
Sbjct: 66  AIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRH-- 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I T  L+V+   + V++   ++ LT KEYQ++  L   K+  + +E  LN ++  
Sbjct: 124 VTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E + +DV I  LR KL++   G  YI+T+   GY   E  
Sbjct: 184 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEG 225


>gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 234

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 6/230 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   +   L+  +++V V +      +  K  +   IILD+ +  I GF++
Sbjct: 5   ILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHINGFDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      PV +LS    +ED++ GL++GADDY++KPF   EL+ARI A+++R    
Sbjct: 65  CKKLR-KNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFEHS 123

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +   G+LS++ D     + G  + LT  E+ ++ L+       L+++   N 
Sbjct: 124 EDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILLSRDRLYNE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L     +   + +D+ + +LR KL++      YI+TVWG GY+   +  D
Sbjct: 184 LTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIADKLD 233


>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
          Length = 247

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
          Length = 226

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+  +   ++  L  E + V+    G + ++    +    I+LD+ +  + G +
Sbjct: 8   RILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMDGAQ 67

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             RA+R       T V  LS +   E ++ G   GADDY++KP   + LV+R++AI++R 
Sbjct: 68  TCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKRI 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                       ++++ +  TV   G  I L  KE+ +++LL        ++E     ++
Sbjct: 128 DAGKAPAPAEEGVAMDRERYTVTRDGREISLPRKEFALLDLLYSSPGKLFSREEIYARIW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   + IDV I KLR+K+ +       I TV G GY    
Sbjct: 188 GSEVVVGDRTIDVHIRKLRQKIGD-----EKIVTVKGVGYKYEP 226


>gi|257092597|ref|YP_003166238.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045121|gb|ACV34309.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 220

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 111/221 (50%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I   LK  ++ V     GE        + + A +LDLGL    G 
Sbjct: 1   MRILLVEDDSLLGDGIRAGLKLADYAVDWVRDGEAARLALLDHAYQACVLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV IL+   S  DK+ GL +GADDY++KPF+  EL AR+RA++RR+ 
Sbjct: 61  SVLKDLRARGNHLPVLILTARDSSADKIAGLDAGADDYLTKPFDLPELQARLRALIRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +    + +   +K V   G  I L+ +EY ++  L   K    T+      LY 
Sbjct: 121 GAATPTLEHAGVVLEPASKRVLRDGQPIALSAREYALLHDLLSHKTHIRTRSQLEESLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     ++V++  LRKKL        +I TV G GY L
Sbjct: 181 WGEETGSNTVEVYVHHLRKKLGTD-----FIRTVRGLGYQL 216


>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
 gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
          Length = 234

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E + +     G + +E+C+  +FD IILD+ + ++ GF 
Sbjct: 13  RILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGFS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K   PV +LS      DK+ G + G DDY+ KPF+  EL+ R++ ++ R+  
Sbjct: 73  TCREIRKFK-EIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 131

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +     L V+   +TV V G R+ ++ KEY+++  L   +N  L +E  +  
Sbjct: 132 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LR  L      + ++ T+ G GY   
Sbjct: 192 VWGYDYYGDDRTLDTHIKLLRSSLGEY---RKFLVTLRGVGYRFE 233


>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 222

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   ++  L+   + V     G  G+   +    D +ILDLGL D  G E
Sbjct: 4   RILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ IL+ M +++ KV  L++GADDY++KPF+ EELVAR++  +R  + 
Sbjct: 64  IARRLRKTS-AVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  G L ++   +     GH + L+ KE+ ++  L+ +     +++     +++G
Sbjct: 123 G--EVIQIGALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWNG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +  G    I TV G GY L+
Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGY-GIIRTVRGIGYALK 220


>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
          Length = 242

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 81  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 237


>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
 gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
 gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
 gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
           5_1_36/D4]
 gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
 gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I+L+ED+  +A  IE  L+     V V   G  G EL +   FD +ILD+ +  + G E
Sbjct: 3   KIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNGLE 62

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + R  R      +PV +L+ + + +D V+GL +GADDY+ KPF+ +EL ARI+A++RRS+
Sbjct: 63  LCRMYRQRFGYHSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLRRSK 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +V GDL ++   +        I LT KEY+++E   L +   L++   L  ++D
Sbjct: 123 EVPVQQLVCGDLILDCTLRRARRGNMDIDLTVKEYRLLEYFLLHQRAVLSRLTLLRDVWD 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    ++DV++  LR K+ +       I TV G GY++ +
Sbjct: 183 KNFDTNTNVVDVYVNYLRAKI-DKGFEDKLIHTVVGVGYMMTD 224


>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 119/218 (54%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD      I  +LK  N+N +    G D + + +   FD IILDL +  + G+++
Sbjct: 4   ILIVEDDANTTKLICAVLKRGNYNCFTARDGLDALSMMERQYFDLIILDLMMPRMDGYQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    +TP+ +++    I+DK RG   G DDY++KPF+++E++ RI+A++RR++  
Sbjct: 64  CKELRDVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRRAQIV 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +  GD +++ +  TV      I L  KE+ ++  L    +   T+   ++ ++   
Sbjct: 124 NEHKLTIGDTTLDYNTLTVTHGEDTITLPQKEFYVLFKLMSYPDKIFTRMQLMDEIWGPD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E +   ++V + +LR+KL N    +  I TV G GY 
Sbjct: 184 TETDGHTLNVHMGRLREKLKNNPDFE--IVTVRGLGYK 219


>gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564]
 gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +    +  L    +NV V   G + +E+ K    D II D+ +  + G+++
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMDGYDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR  RG
Sbjct: 65  ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +N  +  V+V    + LT K ++++ LL+       +K      ++  
Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223
               +   ++V I  LR++L+  A  +   I+TVWG GY + +
Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis EO147]
 gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia oklahomensis C6786]
          Length = 250

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEK 223


>gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 221

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGYQI 218


>gi|145593966|ref|YP_001158263.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303303|gb|ABP53885.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 251

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L+   F+        + + +      +  I+D+ L D  GF+
Sbjct: 27  RVLVVDDEPALAELLLRTLRVAGFDARSAGSRAEALTVAGELAPELAIVDVMLPDGSGFD 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  LR       V  L+   S+ED++ GL  G DDYI+KPF+  E+VAR+ A++RR   
Sbjct: 87  LVHDLRRGLPELAVVFLTAKDSLEDRLTGLNLGGDDYITKPFSVAEVVARVNAVLRRLGG 146

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  A + +   DL ++ DA TV   G  + L+  E++++  +       L+K+  L  ++
Sbjct: 147 RPSASNRLAVADLELDEDAHTVTRAGTPVELSPTEFRLLRHMLENAGRVLSKQQILAQVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +  +++ F+ +LR+K+         + TV G GYVLRE  +
Sbjct: 207 QYDFPGDPGVVEKFVSQLRRKV--DISDPPLLHTVRGFGYVLREPPE 251


>gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580]
 gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
 gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC
           14580]
 gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
          Length = 224

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 122/222 (54%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL++D+  +   +EL L+   ++      G++ ++L K   FD +ILD+ + ++ G+
Sbjct: 1   MNVLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLIKMRNFDLVILDIMMPEMDGW 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V + +R    S PV +L+  +  +D VRGL  GADDY++KPF+++ L+A+I A++RR+R
Sbjct: 59  TVCKEIRRL-TSIPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRRTR 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    L  N    T+ V    I +T  E+ ++  L    +  L+++  + +++ 
Sbjct: 118 RFHE--IRFRGLIWNKQHHTLHVNHREISITPSEFDLLGTLLDHMDQVLSRDQLIENIWG 175

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVL 221
              + E + ID  +  LR +L  A    ++++ TV+G GY  
Sbjct: 176 FNSDIEPRTIDSHMRNLRHRLKKAGFPVEDHLRTVYGVGYKW 217


>gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2]
          Length = 221

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK L++++++ L+  N+ V     G   I   +  + D +ILDLGL D  G 
Sbjct: 1   MRILLVEDDKPLSNALKVSLRKANYTVDCVYDGASAISTLRPSQNDIVILDLGLPDQDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+++R      PV IL+      DK+ GL +GADDY+ KPF  +EL+AR+R + RR  
Sbjct: 61  IVLKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             ++S+I   ++S++    T+ +    +HL  +E  +++ L       L+K    + LY+
Sbjct: 121 TSSESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E     I+V I  LRKK+        +I T+ G GY +
Sbjct: 181 WGEEVSSNTIEVHISNLRKKMPEN-----FIRTIRGVGYCI 216


>gi|330447755|ref|ZP_08311403.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491946|dbj|GAA05900.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 231

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 117/224 (52%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+IED+  +   ++++     ++V   +  ++G++    +    ++LDLGL D  G 
Sbjct: 5   IKILVIEDEAPIRRFLDILTTGHGYSVKTVETAQEGLKQIVSWSPHLVLLDLGLPDADGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +  + LR     TP+ ++S      DKV+ L +GA+DY++KPF  EEL+ARIR  +R   
Sbjct: 65  DFTKELRTW-TETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARIRVALRLHS 123

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +  S       GD+ ++L  +TV   G  I LT KEY+++ LL+      LT +  L  
Sbjct: 124 HNTASDVIQYRFGDVVLDLAMQTVTHHGESIKLTPKEYKILTLLAKNMGKVLTHKQILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G        + + I +LR K+ ++     YI T  G GY L
Sbjct: 184 VWGGNYTEHAHYVRIHIAQLRHKIESSPAQPKYIITENGVGYRL 227


>gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
 gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
           sp. 29_1]
          Length = 233

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 117/224 (52%), Gaps = 6/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + I   L++ N+   +   GE  I     +  D I+LDLGL DI G E+
Sbjct: 7   ILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPDIDGIEI 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           ++ +R    + P+ ++S  S   DK+  L  GADDY++KPF+ EEL+AR+R  +RR    
Sbjct: 67  IKKVRSWS-NMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTLRRLSYI 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     S  + G L ++  A    +    +HLT  EY+++ +LS      LT     + 
Sbjct: 126 ENTNVHSSTFLNGGLKIDYSAGCAYLNDEELHLTPIEYKLLCVLSKNMGKVLTHTYITHE 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E +V  + VF+  LRKK+        YI+T  G GY +
Sbjct: 186 IWGSSWESDVASLRVFMATLRKKIEKEPSSPQYIQTHVGVGYRM 229


>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
 gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
           [Chthoniobacter flavus Ellin428]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD  +   +   L+ E + V     G   + + +    D ++LD+ L    GF++ R L
Sbjct: 2   EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLPGKSGFDLCREL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA--- 123
           R  K  TP+ +LS      DKV GL+ GADDY++KPF+  EL+AR++A++RR+   A   
Sbjct: 62  RAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRATPGAVAA 121

Query: 124 --QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I  G + V+  A           LT +E +++ +L   +   +++E  L  ++  
Sbjct: 122 DVPEEISFGKVHVDCRALRGTRGKEAFELTPRELKVLAVLHRERGNAVSRETILTEVWGI 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + +D  + KLR+K+    G   ++ TV G GY L
Sbjct: 182 DYYGTTRTLDQLVVKLRQKIEATPGEPQHLLTVHGLGYRL 221


>gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 123/221 (55%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    LS++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY 
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGYR 216


>gi|283781851|ref|YP_003372606.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
 gi|283440304|gb|ADB18746.1| two component transcriptional regulator, winged helix family
           [Pirellula staleyi DSM 6068]
          Length = 235

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+  +   +   L SE + +       +G+++      D I+LDLGL D  G EV
Sbjct: 13  VLIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGLPDRDGQEV 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L  LR    ++P+ ILS       K++ L  GADDY++KPF+  EL+AR+R  +R S   
Sbjct: 73  LEQLREW-YTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRT 131

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +    GDL V+  ++ V  +   +HLT  EY+++  +       LT    L  ++ 
Sbjct: 132 GTEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWG 191

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D  E   + VF+  LR+K+        YI T  G GY  R
Sbjct: 192 PQDSQENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRFR 233


>gi|153939744|ref|YP_001390056.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935640|gb|ABS41138.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318142|gb|ADF98519.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 5/225 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I  +EDD +L + +   +K + + + V     +   L K  ++D +ILD+ L D  G
Sbjct: 1   MKHIFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ + +R      P+  L+      D + GL  G DDYI+KPF     ++RI A++RRS
Sbjct: 61  YDLCKKIRKTS-KVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRS 119

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + + +  ++V L    V   G ++ LT  EY+++ +     +  L+ E  L+ 
Sbjct: 120 NNFNQADTELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQILSR 179

Query: 178 LYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+D   +  +   + V+I +LR K+ +  G    I TV   GY  
Sbjct: 180 LWDCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYKW 224


>gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2]
 gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719]
 gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192]
 gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 223

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 122/221 (55%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL  RI+A++RR+ 
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    L ++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY 
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGYR 216


>gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
 gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
          Length = 225

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +       L +    V   + G + +      ++D ++ D    D+ G 
Sbjct: 1   MRILLLEDDPEIGTWTVKGLTAAGHVVDWIENGREALLAATTRDYDVLVFDRMTPDLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR A+I+TP+ +L+ + ++ED+V GL++GADDY+SKPF   EL+ARI A+ RR R
Sbjct: 61  SALKTLRSARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGR 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A    + +    L ++L ++T    G  + L  KE++++E+L   K    T+ M L  
Sbjct: 121 AEAAETATRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLER 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D   +P   +++  + +LR K+     G  +I+TV G GY+ 
Sbjct: 181 VWDINFDPSTSVVETHMSRLRNKIEK-PFGLEFIKTVRGSGYMF 223


>gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
 gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC
           8482]
 gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
 gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus
           PC510]
 gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
          Length = 229

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 121/227 (53%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++ +  +++ ++LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYFVDTANSAEEALKM-ELTQYNLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  AQ  +    L V++  K V + G  I LT KE++++ LL   K    ++E  L
Sbjct: 124 SPTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 AKVWQEEVYVLDRTIDVNITRLRKKIGEYG---KCIVTRLGYGYCFE 227


>gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 220

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 134/222 (60%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+A+   I + L +E + +   + G   +   +   FD ++LDLGL  + GF
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNNEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    +S++  ++ V  QG+ + +T  EYQ++  L +R    +T+E   N LY 
Sbjct: 121 GRAQPLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+ E   ++V I  LRKKLS        I TV G GY+L 
Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLE 217


>gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 232

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 121/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DDK L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGDNSAPTLEVDGLRLNPGRQEASFDDVVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL        + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDSLPWFKTLRGRGYLMVSAA 232


>gi|239944331|ref|ZP_04696268.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990784|ref|ZP_04711448.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 220

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L ++  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 121 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL  A      I TV G GY L 
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGAAT-----IRTVRGAGYRLE 218


>gi|225420338|ref|ZP_03762641.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme
           DSM 15981]
 gi|225041024|gb|EEG51270.1| hypothetical protein CLOSTASPAR_06682 [Clostridium asparagiforme
           DSM 15981]
          Length = 231

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 124/226 (54%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K +   IE +L++  +       G DGI L    +   ++LDLGL DI G EV
Sbjct: 7   IIIIEDEKNICSFIETILEAHGYVTSTATNGNDGIALIASTKPSVVLLDLGLPDIDGLEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R+   + P+ ++S  +  + KV  L  GADDY++KPF   EL+ARIR  +R S+  
Sbjct: 67  IRRVRLWS-TVPIIVISARTQEKSKVAALDQGADDYLTKPFGTSELMARIRTALRHSQTG 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +Q L   GDL ++ + + V+V+   +HLT  EY+++ LL+      LT +  +N +
Sbjct: 126 ASAKSQPLYHVGDLMIDFERRLVKVKDQDVHLTQIEYKLVSLLAQNAGRVLTYDYIINEI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    +   +I+ V +  +R+KL        YI T  G GY +RE 
Sbjct: 186 WGPYADSNNQILRVNMAHIRRKLEANPAEPQYIYTEIGVGYRMREE 231


>gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170]
 gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170]
          Length = 228

 Score =  249 bits (636), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L SE + V+  + G +G+   K  +   IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       +V G ++GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 119 SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R  + S    +  G++ +N +   +   G  I L  KE++++ LL+ + N    +E+ L
Sbjct: 126 FRKDSNSNDDIVSVGNIVINREEYKIINDGTEIILPRKEFELLSLLTSKPNKVFKREVIL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + IDV I KLR+K+ +      + +TV G GY   
Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 227


>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 223

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 118/223 (52%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D++ +   ++L L    +     + G + +EL +   FD I+LD+ + ++ G+
Sbjct: 2   IKILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVMMPNMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    +R    + P+ +L+  +   D V+GL  GADDYI+KPF+++ LVARI A++RR++
Sbjct: 62  DTCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++ 
Sbjct: 121 KDG--FISFNGIEWDKTKHTVTVYSEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            + + E + +D  I  +R KL       + Y+ET++  GY  +
Sbjct: 179 YQTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYKWK 221


>gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis T17]
 gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
 gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium
           tuberculosis T17]
          Length = 236

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/215 (34%), Positives = 117/215 (54%), Gaps = 4/215 (1%)

Query: 11  ALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK 70
            +  S+E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR   
Sbjct: 21  DVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD 80

Query: 71  ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLI 127
              PVC+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I
Sbjct: 81  NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETI 140

Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187
             G L V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      + 
Sbjct: 141 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADT 200

Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++DVFI  LR+KL  A GG   + TV G G+VLR
Sbjct: 201 NVVDVFIGYLRRKLE-AGGGPRLLHTVRGVGFVLR 234


>gi|167839158|ref|ZP_02465935.1| response regulator protein [Burkholderia thailandensis MSMB43]
          Length = 240

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 131/233 (56%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR+RA++RR++ 
Sbjct: 69  VCRRIRGFS-NVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARVRALLRRAQP 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GASVESPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L     +   + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
 gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
          Length = 232

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/226 (25%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L++E + ++    G++ I+  K      I+LD+ + ++ G 
Sbjct: 6   IKILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMPEMDGI 65

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R      +  +  L+       +V G ++GADDYI+KP   + LV+++++++RR
Sbjct: 66  EACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRR 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S    +  +  GD+ ++ +   V   G RI L  KE+++  LL+ +      +E+ L+
Sbjct: 126 LKSEKQNEETVTIGDIVIDREEYVVFKAGKRISLPRKEFELFSLLTSKPGKVFKREVILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I KLR+K+ +      + +TV G GY   
Sbjct: 186 TVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 226


>gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida 3523]
          Length = 229

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+           V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKEIAQFIKTKFVENGIETTVAYDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   ++TP+ ILS + S E+K++GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GD+ ++  A  V   G  I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTE-GGLIDPIKTIRGFGYVIQE 229


>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
 gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
           [Deinococcus proteolyticus MRP]
          Length = 222

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IED+  ++  ++  L+   +       G  G+ L +    D +ILDLGL D+ G E
Sbjct: 4   RILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLDGAE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    S P+ IL+ M +++ KV  L++GADDY++KPF  EELVAR++  +R  + 
Sbjct: 64  VTRRLR-KNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLRHQQH 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I  GDL ++   +    +GH + L+ +E+ ++  L+ +     ++      ++ G
Sbjct: 123 G--DVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWSG 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  ++DV +  +R KL +  G    I TV G GY L+
Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGY-GLIRTVRGIGYALK 220


>gi|302382397|ref|YP_003818220.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264]
 gi|302193025|gb|ADL00597.1| two component transcriptional regulator, winged helix family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 239

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   +   L    +         +          D I+LDL +    G  
Sbjct: 7   RILVVDDDPGIREVLCEYLGQHGYEARGAASAAEMDRALASGPTDLIVLDLMMPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R L     + PV +LS M    D++ GL+ GADDY++KP N  EL+ARIRA++RR R 
Sbjct: 67  VVRRL---SGTPPVVMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARIRAVLRRPRD 123

Query: 122 H---AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               A++ +     +++L  + ++   G  + L+  E+ ++     R    LT++  L  
Sbjct: 124 DDTPAEAALTFDGWTLDLVRRELKRSNGEPVQLSAGEFGLLRAFVERPGRVLTRDQLLEA 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + +DV I +LRKKL +   G++ I T+ G GY      +
Sbjct: 184 ARGTEADVFDRAMDVQISRLRKKL-DDGSGRDLITTIRGEGYRFDARVR 231


>gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 231

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 126/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L  +I   L+   F V     GE    +     +DA+ILD+ +  + G 
Sbjct: 1   MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR  +++ P+ +L+   +++++++GL +GADDY++KPF+  EL AR+RA++RR  
Sbjct: 61  AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  GDL ++   +     G  + LT +E+ ++  L+      +++     H++D
Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   +IDV++ +LR+K+ + AG +  + T  G+G +L ++ 
Sbjct: 181 ENHDPNANLIDVYVSRLRRKV-DGAGRRPLLHTRRGQGVLLSDDG 224


>gi|182419109|ref|ZP_02950363.1| two-component response regulator [Clostridium butyricum 5521]
 gi|237669289|ref|ZP_04529271.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182377064|gb|EDT74634.1| two-component response regulator [Clostridium butyricum 5521]
 gi|237655176|gb|EEP52734.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 233

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 114/230 (49%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+A+A ++   LK E F V      +    +      D I+LD+ L D  G+E
Sbjct: 3   RILLVEDDRAVALAVIYSLKKEGFEVEHATNLKSARSIL-NDSIDLILLDVMLPDGDGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +   +R A+ + P+  ++      + V GL  GADDY+SKP    ELV+RI A++RR   
Sbjct: 62  LCSEIRTAQNNIPIIFMTACDEENNVVIGLDLGADDYVSKPVKIRELVSRINAVLRRKGK 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + +  + +L ++  A  V   G  I LT  EY+++ LL       LT++M L 
Sbjct: 122 DNNINSVKEIFKSENLELDKGAHIVRKNGEEISLTLNEYKLMLLLMENSPNVLTRDMMLE 181

Query: 177 HLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++D   +  +   + V I +LR+K+ +      +I T+ G GY      
Sbjct: 182 KVWDIEGNFIDANALSVNIKRLREKIEDDIKSPKFIITIRGVGYKWAPKV 231


>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
 gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IEDD  +   ++  L+ + + V   + G DG+   +    D I+LD+ L  + G
Sbjct: 1   MKTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLPKMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V   +R      PV ++S + S ED+++G +   DDYI KP +   ++ +I A++RR 
Sbjct: 61  YTVCEMIRQES-EIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRRY 119

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  +   ++++ +D   V+V    I+LT KEY++++ L   +   ++++ FLN
Sbjct: 120 ENKGLEKKEELHYKEMTLMVDNYRVKVGKKDINLTQKEYEILKELLENQGRVISRDSFLN 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+      E + +D  I  LRKKL +A    NYIETV G GY + +
Sbjct: 180 RLWRYEYVGEERAVDNHIKNLRKKLGDAG---NYIETVRGVGYRVEK 223


>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
          Length = 242

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 81  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVDT 240


>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB900]
 gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB056]
 gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB058]
 gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB059]
 gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
 gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           AYE]
 gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB0057]
 gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii AB307-0294]
 gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
 gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
 gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter sp. DR1]
 gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
 gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter
           calcoaceticus PHEA-2]
 gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013150]
 gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6013113]
 gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii 6014059]
          Length = 236

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     +  I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGVDRFVQTVRGTGYRFSTRA 231


>gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC
           33394]
 gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC
           33394]
          Length = 237

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A ++ + LK  N+ V     G           +D ++LDLGL    G 
Sbjct: 13  MRILLVEDDGMIAQAVMMGLKHANYAVDWVQDGLAAQTALAGQNYDLVLLDLGLPKQDGL 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR +R  +  TPV I++    ++ ++ GL  GADDY+ KPF+  EL+ARIRA++RR  
Sbjct: 73  SMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLRRHH 132

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  LI  G +++N     V++ G    I L+ KE+ +++ L  R  T  ++    + +
Sbjct: 133 GQAAPLISNGVITLNPATYQVQLAGQEENISLSNKEFAILQALVSRAGTIHSRADLEDKI 192

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           Y   DE E   ID  I  LRKK+     GK+ I+ + G G
Sbjct: 193 YGWGDEVESNAIDFLIHSLRKKI-----GKDLIKNIRGVG 227


>gi|85707059|ref|ZP_01038148.1| DNA-binding response regulator [Roseovarius sp. 217]
 gi|85668500|gb|EAQ23372.1| DNA-binding response regulator [Roseovarius sp. 217]
          Length = 240

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/234 (26%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D + +  ++   L+             D        ++D I+LD+ +    G  
Sbjct: 6   HILVVDDHREIRDAVTRYLEKNGMRATSARDAVDMDAKLANGKYDLIVLDVMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R L  A  S P+ +L+ +    D++ GL+ GADDY++KPFN  ELVARI+AI+RRS  
Sbjct: 66  VCRRL-SASGSVPILMLTALGEETDRIVGLEIGADDYLAKPFNPRELVARIKAILRRSTK 124

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       I      ++ D++ +    G +I LT  E++++ +L  R    L+++ 
Sbjct: 125 AEPYAGTLSGRRIAFAHWIIDTDSRVLSNEDGEQIDLTSAEFKLLTVLLERPRFVLSRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L+           + ID  I +LR+K+         + TV G GY L  +  +
Sbjct: 185 LLDLTAGRAASVFDRTIDNQISRLRRKIELDPSRPRIVTTVRGGGYCLAADVHE 238


>gi|113968625|ref|YP_732418.1| two component transcriptional regulator [Shewanella sp. MR-4]
 gi|114049227|ref|YP_739777.1| two component transcriptional regulator [Shewanella sp. MR-7]
 gi|117918739|ref|YP_867931.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|113883309|gb|ABI37361.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-4]
 gi|113890669|gb|ABI44720.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. MR-7]
 gi|117611071|gb|ABK46525.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 225

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD      I      +  N+     G  G+      ++D +ILD  L  + G 
Sbjct: 1   MKILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLLQATSGQYDLLILDRMLPQLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L ALR     TPV ILS ++ ++++V+GL++G DDY++KPF   EL+ R   +++R +
Sbjct: 61  KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +V G L + L  + V + GH + L  KE+Q+++ L    N  +++ +    ++
Sbjct: 121 SVPITTDLVVGGLKMELLTRNVTLDGHDLMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +P   +IDV I KLR+K     G    IETV G GY LR+
Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEL-GHGELIETVRGAGYRLRQ 223


>gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 225

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGF 60
           +IL+++D+  +   ++  L  + F V     GE  +++     +   I+LD+ +  + GF
Sbjct: 5   KILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E L  LR      PV +L+  S   D++ G + G D+YI+KPF+ + LVAR+ A++RR+ 
Sbjct: 65  ETLEVLRQ-YSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTI 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++  +V G + ++  A++V +    + L+ KEY+++      K   L++E  L+ +++
Sbjct: 124 GESEEKLVAGAIEIDKVARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVWN 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + ID  + KLR K+       +YI+TVWG GY   
Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG---DYIKTVWGMGYKFE 222


>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/220 (29%), Positives = 118/220 (53%), Gaps = 3/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +++LLI+D+  +   +E+ L +E F+V     G   + + K ++    ILD+ +  + GF
Sbjct: 7   IKVLLIDDEPNILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMMPGMDGF 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + L+    +T + +L+    ++DKV+GL  GADDY++KPF+ EEL+ARI A VR   
Sbjct: 67  EVCKMLKKT-ENTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARVRNQF 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +V G   ++   K +      + L+  EY+++  + L +   L+K   L+ ++ 
Sbjct: 126 PNLLGEVVIGPFRIDDRRKEIFYHQVVLELSPTEYELLRFMVLNQGLVLSKTKILDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                +  I++V+I  LR KL++       I T+ G GY 
Sbjct: 186 YDFVGDENIVEVYIRSLRDKLND--KEHKLIRTLRGSGYR 223


>gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 258

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ +LL+EDD  LA  IE  LK+E FNV +     +  +     + D ++LD+ L D  G
Sbjct: 28  MKNVLLVEDDTTLAFGIEYTLKNEGFNVSLAVDLAEARKALHTNKLDIVLLDVRLPDGNG 87

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE  + +R      P+  L+  +   + V GL  GADDYI KP   +EL++RI A++RR+
Sbjct: 88  FEFCKEIRAVS-KMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRRN 146

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A   S+I + D+ +N+    V  +G  + LT  EY+++  L       L++   L H
Sbjct: 147 SAEANIASIIKSNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNTILEH 206

Query: 178 LYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+D   +  +   + V+I +LR+K+ + A     I TV G GY  
Sbjct: 207 LWDIDGEFIDDNTLSVYIRRLREKIEDNASSPVNILTVRGVGYKW 251


>gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
 gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158]
          Length = 251

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     GE  +       +D ++LDLGL    G 
Sbjct: 32  MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGEAALTALGGEAYDLLLLDLGLPKRDGI 91

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 92  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 151

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 152 GRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 211

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 212 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 251


>gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
           19707]
 gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family
           [Nitrosococcus oceani ATCC 19707]
 gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 219

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D ++V        LT  E++++    L     L++     HLY
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DG  E +  +++V I +LR+KL +       IET   +GY  ++
Sbjct: 181 DGESERDSNVLEVHISRLRRKLGD-----PVIETRRNQGYRFKK 219


>gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
 gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family
           [Cellulophaga algicola DSM 14237]
          Length = 228

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/227 (26%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++D+  +   +   L +E + V+    G +G+   K  +   IILD+ + ++ G 
Sbjct: 6   IRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+  S    +V G  +GADDYI+KP   +  V++++A++RR
Sbjct: 66  EACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVKALLRR 125

Query: 119 SRGH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +     A+ ++  G++ +N +   +   G  + L  KE++++ LL+ + N    +E+ L
Sbjct: 126 LKDEEAAAEDIVKVGNIVINREEYKIVNDGQELVLPRKEFELLSLLTSKPNKVFKREVIL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + IDV I KLR+K+ +      + +TV G GY   
Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 227


>gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
 gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2]
          Length = 226

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 114/225 (50%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ +   I    + E   +     G D IE CK  E+D II+D+ + ++ GF 
Sbjct: 3   KLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEYDLIIMDIMMPNLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R   + TPV +LS      D++ G + G DDY+ KPF+ +EL+ R+ AI++R  G
Sbjct: 63  AVKEIRKD-VQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 + +     L ++  A+ V +    + ++ KEY ++  L   +   LT+E  ++ 
Sbjct: 122 DVNTRKKDIYTYEGLKIDFTARKVFIDDKEVEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LRK L + +     I T+ G GY   
Sbjct: 182 VWGYDFYGDDRTLDTHIKLLRKSLQDYS---RLIITLRGVGYRFE 223


>gi|300857011|ref|YP_003781995.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300437126|gb|ADK16893.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 215

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E+ L +E + V+    G DGI++        +ILD+ +  I G++V   +R    + P+
Sbjct: 1   MEVYLINEGYKVFKAYNGIDGIKIINEENIHLVILDIMMPGIDGYQVCMKIRKD-YNIPI 59

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--------RGHAQSLI 127
            +LS  S   DK++GL  GADDY++KPFN  EL+AR+++ +RR         +     ++
Sbjct: 60  IMLSAKSQDMDKIQGLSIGADDYMTKPFNPMELIARVKSQIRRYIFLNEKSNKTSDTDIV 119

Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187
              D+++N     V   G  + LT  EY+++ LL+       + E     ++  +     
Sbjct: 120 EFKDITINRKNHKVCKLGTELKLTPIEYEILLLLANNLGKVFSAEEIFKEIWKEKYLEGN 179

Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + V + +LR+K+         IETVWG GY + E
Sbjct: 180 NTVMVHMWRLREKVEQNPKEPKIIETVWGVGYKIEE 215


>gi|322434235|ref|YP_004216447.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161962|gb|ADW67667.1| two component transcriptional regulator, winged helix family
           [Acidobacterium sp. MP5ACTX9]
          Length = 243

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/237 (29%), Positives = 120/237 (50%), Gaps = 17/237 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +  +++    SE + V V   G +   +C+  +  A++LDL L  I G ++
Sbjct: 4   ILVVEDDVRIQKALQRQFSSEGYAVRVVSEGTEAARVCREIKPVAVVLDLMLPGISGRDI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R ++   + TPV ILS +S + DKV  L+ GADDY++KPF+  EL+AR++A +RR+   
Sbjct: 64  CRQIKTDSVDTPVIILSAISEVADKVLLLEIGADDYVTKPFSPRELLARVQAAIRRAART 123

Query: 123 AQSL-----------------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
            ++                   V G ++ +L    V+ +G  + LT  E++++       
Sbjct: 124 VEAQASAHAAGGAAADAEPALCVFGSVTADLLKMEVKREGVEVTLTAHEFKLLRYFLTHV 183

Query: 166 NTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  +T+E  L  ++     P  +I+D  + KLR+KL        +  TV G GY   
Sbjct: 184 DRVITREELLQDVWGYNFFPTTRIVDNQVLKLRQKLEADPAHPVHFRTVHGIGYKFV 240


>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
 gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
           [Moraxella catarrhalis RH4]
          Length = 256

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           +IL++ED+ A+   I   L   +F+V      +         + D I+LD  +     G 
Sbjct: 30  KILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGI 89

Query: 61  EVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +  R L+        P+ +L+     ++KV GL +G DDYI+KPF+  EL++R++A++RR
Sbjct: 90  DFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRR 149

Query: 119 SR-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +     + L+  G+LS+N  ++ V   G  I ++  EY+++           T+   L+ 
Sbjct: 150 TGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDA 209

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++ G    + + IDV I +LR KL    G    I+TV G GY   + +
Sbjct: 210 VWGGNVYIDERTIDVHIRRLR-KLLAPYGADTLIQTVRGTGYRFSDKS 256


>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
 gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
          Length = 223

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 119/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V G RI LT  E+ ++ L    KN   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNKNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           + + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYKWK 221


>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
 gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 225

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 220


>gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
          Length = 225

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +   + Y FD  I+DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGLPGISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +  H + LT  EY+++E L       + K+  +  LY 
Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           G +E +  +I+V + +LR+KL     G   I+TV G GY+  E
Sbjct: 181 GDEERDPNVIEVLVGRLRRKLE-GERGFKPIDTVRGLGYLFTE 222


>gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 236

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     + +I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKVIDANGLMLDPVSQRVSFGNSILEMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGVDRFVQTVRGTGYRFSTRA 231


>gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
 gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator,
           winged helix family [Yersinia frederiksenii ATCC 33641]
          Length = 235

 Score =  249 bits (636), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++  +  I       ++++ V D G DG+ L    ++DAIILD+ L  + G+
Sbjct: 1   MRLLIVEDEEKTSSYIRRAFLELSYSIDVADNGNDGLYLAIENDYDAIILDVMLPGLDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L  LR  K  TPV +LS  S+++++VRGL+SGADDY+ KPF+  ELVARI+A+ RR  
Sbjct: 61  SLLEYLRAEK-QTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMS 119

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  + I+  DL ++L A+ V   G RI LT KE+ ++ LL+  +   L+K M  + +
Sbjct: 120 KDNNDPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEV 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   + +  +++V I +LR K+ +       + TV G GYVL  
Sbjct: 180 WDMNFDSDANVVEVAIKRLRNKI-DTPYAVKLLYTVRGMGYVLEP 223


>gi|323693531|ref|ZP_08107735.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
 gi|323502386|gb|EGB18244.1| hypothetical protein HMPREF9475_02598 [Clostridium symbiosum
           WAL-14673]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ++   +E ++ S      V D G   + L K + +D I++D+ L D+ GF+
Sbjct: 4   KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   I TPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G  + N            I L+ KE  ++ L         TK+M   H+
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEEEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +   I V+I +LR K+        +I TV G GY  
Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRF 226


>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
 gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
           sp. Ex25]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F+V   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAV-NDKIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSST 121

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++      I   +L +    +        + LT  E+ ++          LTKE     
Sbjct: 122 QKNTKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGQVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLLEE 228


>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +   ++    + V+  ++TV V    I+LT  E++++          LT+E  ++
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 109/225 (48%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +   +   L +E + V     G + ++L K +    IILD+ + ++ G E
Sbjct: 7   KILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMPEMDGIE 66

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
               +R       T +   +       +V G  +GADDYI+KP   + LV++++A++RR 
Sbjct: 67  ACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRRF 126

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              G +  +   G L +N +   V      + L  KE++++ LL+ +     T+E  L+ 
Sbjct: 127 KEEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDK 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++        + IDV I KLR+K+ + +      +TV G GY   
Sbjct: 187 VWGLEVVVGGRTIDVHIRKLREKIGDESF-----KTVKGVGYKFV 226


>gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
 gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family
           [Paenibacillus sp. JDR-2]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+LL +D+  +   +EL L +E F++     G   +++ K ++   +ILD+ + ++ GF
Sbjct: 4   IRLLLADDEPHIIQFLELGLLNEGFDIRTAQDGAAALQVAKEFQPHVLILDVMMPELNGF 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV +A++    +  V +L+    IED+V+GL  GADDY+ KPF+ EEL+ARI+A +R   
Sbjct: 64  EVCQAVKDTGANVAVIMLTAKDDIEDRVKGLTLGADDYVVKPFSFEELLARIKARLRNQF 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G   VN   K +  Q   + L+  EY++++ +       L+K   L+ ++ 
Sbjct: 124 PSLLGEATYGPFRVNDVKKELIYQDQVLELSPTEYELLKYIVQNNGIVLSKAQILDSVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R   E  I++V+I  LR KL +       I T+ G GY +
Sbjct: 184 YRFGGEENIVEVYIRSLRDKLGD--KEHRLIRTLRGVGYRM 222


>gi|113868143|ref|YP_726632.1| response regulator [Ralstonia eutropha H16]
 gi|113526919|emb|CAJ93264.1| response regulator involved in heavy metal response, OmpR-family
           [Ralstonia eutropha H16]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+      +   L    + V     G DG+ L     +DAI+LD+ L  + G 
Sbjct: 1   MKLLLVEDEIKTVDYLRRGLSENGYVVDTAHNGVDGLHLACTEPYDAIVLDVMLPALDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR  +  TPV +L+    ++D++    +GADDY+SKPF+  EL+AR+  + RR R
Sbjct: 61  SVLKSLRREQ-QTPVLMLTARDDLDDRLNAFDAGADDYLSKPFSFLELLARLNVLTRRGR 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S +  GDL ++L ++       R+ L+ +E+ ++ +L+ R+   ++K      ++D
Sbjct: 120 QTEPSQLTVGDLRIDLLSRRATRGTRRLELSAREFTLLSVLARRQAQIVSKTAITELVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +++V + +LR KL +  G    + T+ G GYVL 
Sbjct: 180 ISFDCNTNVVEVAVKRLRAKL-DWPGEAKLLHTIRGMGYVLE 220


>gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus]
          Length = 232

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 123/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +   +  ++K   +       G + +   +  ++D ++LDL L  I G 
Sbjct: 5   INILVVEDDNDINQMLCKIIKKSKYYAIPAYSGTEALLYLENKQWDLVLLDLMLPGISGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R    STPV I+S  +  + K+  L+ GADDYISKPF+ EE+ ARI A++RR +
Sbjct: 65  EVLKQVRE-HSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQ 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   +   +V  D+ +N+D++ V V    + LT +E+++++LL        +K   
Sbjct: 124 KSEREKNTSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +++ +   +   ++V +  LR KL+       YIET+WG GY L+
Sbjct: 184 FETVWEDKFHGDENTVNVHMSNLRNKLAQNNATDTYIETIWGIGYRLK 231


>gi|76818875|ref|YP_337410.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|76583348|gb|ABA52822.1| response regulator protein [Burkholderia pseudomallei 1710b]
          Length = 288

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 57  RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 117 VCRRIRAFS-NVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 175

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 176 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 235

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L     +   + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 236 KQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 288


>gi|317484213|ref|ZP_07943142.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
 gi|316924562|gb|EFV45719.1| response regulator receiver domain-containing protein [Bilophila
           wadsworthia 3_1_6]
          Length = 241

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           LL++DD  L   +   L+   F++ V +    G+E     E+D I+LD+ L D+ G +VL
Sbjct: 12  LLVDDDAKLCGLLRDYLEGFGFSLDVAEDASSGLEKAVANEYDVILLDMMLPDMDGLDVL 71

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG-- 121
           R LR    STP+ I S       ++ GL+ GADDY+ K F+  EL+AR+RA++RR++   
Sbjct: 72  RRLREIG-STPIVIFSAQDEEASRIVGLEMGADDYVPKAFSPRELLARVRAVLRRAQPVQ 130

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     ++    L ++  +    + G  + LT  E++++  ++       T+E  L
Sbjct: 131 AERKEPEEDGVVRVRGLWMDRKSMKARMDGVPMDLTALEFRILFGMAAHPGRVFTRENLL 190

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                       + +D+ I  LR+KL +      Y++T+ G GY L
Sbjct: 191 ELAVGREFSRYDRSVDMHISTLRRKLGDDPHNPAYLKTIRGMGYTL 236


>gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD  LA  +E  L    + V V   G    + L     FD  +LD  L  + G
Sbjct: 1   MRILVAEDDVRLAGLLEESLAEAGWQVEVVHNGRVAYDRLLSDTSFDVALLDWMLPGMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R LR   ++ P+ +L+    + D++ GL +GADDY+ KPF+ +EL+AR+RA+ RR 
Sbjct: 61  VTVARRLRGLGLALPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL V+  A+ V   G  I L+ +E+ ++ LL+      +T+   L+ ++
Sbjct: 121 GLGGEAPVQIGDLVVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG  +    +IDV +  +R K+ +   G + I T+ G GY L
Sbjct: 181 DGETDLRSNVIDVHLAAIRGKI-DKPFGTDTITTLRGVGYRL 221


>gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
 gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family
           [Treponema brennaborense DSM 12168]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/236 (27%), Positives = 120/236 (50%), Gaps = 14/236 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+L+ED+  +  ++   L+ +       D G   ++  +    D IILD+ L D  GF +
Sbjct: 4   IMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRREIADLIILDVMLPDGNGFAL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R    + P+  L+   S  D++ G + GADDYI KPF+ +ELV R++A++RRS G 
Sbjct: 64  AKSIRAVS-AVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRRSGGS 122

Query: 123 AQSLIVTGD--------LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A+++              +++    T+ + G  ++LTG E++++  L+      +++E  
Sbjct: 123 AETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVYLAENSGQVVSREQI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           L+  ++   E   + +D  I  LR KL     G  +I TV G GY    + + E+ 
Sbjct: 183 LSECFNYFFEGSERTVDTHIANLRAKL-----GVGWIVTVRGFGYKFGGSLRSESA 233


>gi|323485093|ref|ZP_08090446.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
 gi|323401649|gb|EGA93994.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD ++   +E ++ S      V D G   + L K + +D I++D+ L D+ GF+
Sbjct: 4   KVLIVDDDPSICRLLEKVMHSNELETTVADSGLAALNLLKNHSYDMILMDITLGDMEGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ LR   I TPV I+SG +   D + GL  GADDYI+KPF    L A+++A++RR++ 
Sbjct: 64  VIKKLRSQGIQTPVMIISGRNEDYDSLYGLSLGADDYITKPFRPLVLGAKVKALIRRNKN 123

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  G  + N            I L+ KE  ++ L         TK+M   H+
Sbjct: 124 MVLDHSDVLDCGPFTYNTSTMRFYKGEKEISLSSKENSLMLLFMKHPGQVFTKDMIYEHV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      +   I V+I +LR K+        +I TV G GY  
Sbjct: 184 WGTSVAVDDNAIMVYINRLRGKIEEDRQKPEHIVTVRGLGYRF 226


>gi|298246096|ref|ZP_06969902.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297553577|gb|EFH87442.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D++ +   + +  + E F V+V+  G + ++  + ++ D +ILDL L  + G  V
Sbjct: 14  ILLVDDERQIIEFLRMGFEYEGFTVHVSMTGHEALQAVERHKPDIVILDLMLPGLDGMAV 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +  A  +T + +L+    +ED+V GL+ GADDY++KPF  +EL+AR+RA++RR    
Sbjct: 74  AQQIHGA-YNTAIIMLTAREEVEDRVTGLELGADDYVTKPFAFKELLARVRAVLRRRGLQ 132

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             +++V  D+++N   + V      I LT +E++++EL        LT+   L  ++   
Sbjct: 133 LGNVLVFQDITLNRTTRVVRRGAREIELTPREFELLELFLSHPRQVLTRNAILARIWGYN 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  +I+V++  LR+KL +       ++TV G GYVLRE
Sbjct: 193 YVGDDNVIEVYVKHLREKLQDLP--PQLLQTVRGVGYVLRE 231


>gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
 gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685]
          Length = 243

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/221 (28%), Positives = 114/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  L   +   L + ++  +    G++ +   + + +D I+LDL L  + G  
Sbjct: 17  RILIVEDEPKLGQLLIDYLLAASYRPHWLSRGDEVLPHLQNHLYDLILLDLMLPGVDGLT 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R +    P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 77  LCREIRRSS-EVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGL 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                + T  L ++        +   + LT  E+++++ L+ +    L++E  LNHLYD 
Sbjct: 136 QEGGEVRT-PLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQLLNHLYDD 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  I  LR+KL     G+  I +V+G GY   
Sbjct: 195 YRVVTDRTVDSHIKNLRRKLEAIEQGEPLIRSVYGVGYRWE 235


>gi|163853174|ref|YP_001641217.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218531978|ref|YP_002422794.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
 gi|240140593|ref|YP_002965073.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254563083|ref|YP_003070178.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression [Methylobacterium
           extorquens DM4]
 gi|163664779|gb|ABY32146.1| response regulator receiver [Methylobacterium extorquens PA1]
 gi|218524281|gb|ACK84866.1| two component transcriptional regulator, winged helix family
           [Methylobacterium chloromethanicum CM4]
 gi|240010570|gb|ACS41796.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens AM1]
 gi|254270361|emb|CAX26357.1| response regulator in two-component regulatory system with EnvZ,
           regulates ompF and ompC expression (OmpR family)
           [Methylobacterium extorquens DM4]
          Length = 241

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ ++  +   L++    V V   G +   +      D I+LDL L    G  +
Sbjct: 11  ILVVEDDREISALVARYLRANECRVSVAGDGREMDRVLADARVDLIVLDLMLPGEDGLSL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A    P+ +L+  S   D++ GL+ GADDY+ KPFN  EL+ARIRAI+RR    
Sbjct: 71  CRRLRAAS-QVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGAE 129

Query: 123 AQS-----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q             ++++  + V   +G RI +TG E+ ++  L LR    L+++  L+
Sbjct: 130 PQDGDGARRFHFSGWTLDVGLRQVLSPEGARIAVTGAEFDLLHALCLRPGRVLSRDQLLD 189

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   P  + IDV + +LR+KL         I T+   GY+    
Sbjct: 190 LTQGRAAGPFERSIDVLVSRLRQKLERDPRNPEIIRTIRSGGYLFAPE 237


>gi|330959009|gb|EGH59269.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGS 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L V+L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALRFGPLIVDLAYRRVLLDEQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLGDDPTAPRFIITEPGIGYRL 226


>gi|255281457|ref|ZP_05346012.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
 gi|255267945|gb|EET61150.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPGF 60
           RILL+EDD  L   ++  LK   F V         ++ L    ++D ++LD+ L D  GF
Sbjct: 3   RILLLEDDANLIDGLQYSLKKNGFEVDTVRSVHAAMQRLADMGKYDLLLLDVTLPDGSGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV   +R      P+  L+      + +RGL  G DDYI+KPF   EL +RIRA++RR  
Sbjct: 63  EVCGYVREKNPRIPIIFLTAADEEVNIIRGLDLGGDDYITKPFKLGELCSRIRALLRRAG 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +V GD++V+L    V + G  + LTG EY+++ LL    N  +T+E  LN 
Sbjct: 123 IAESSGDTALVCGDITVDLLGSRVLLGGVNLELTGAEYRLLCLLVRNANRIVTRETILNE 182

Query: 178 LYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+DG  D  +   + V++ +LR+K+        ++ TV G GY  RE
Sbjct: 183 LWDGTGDYVDDNTLSVYVRRLREKVEKEPSRPQHLITVRGFGYQWRE 229


>gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
 gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
          Length = 238

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ ++   +   L   ++++     G +  E+C+  + D ++LD+ +    G  
Sbjct: 5   KILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIMMPGEDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR  +      PV +L+ M+   D++ GL+ GADDY++KPFN  ELVARI+A++RR+ G
Sbjct: 65  LLREWQATGG-PPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAGG 123

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEM 173
              +               +++  + +    H  I LTG E+ ++ +L       L+++ 
Sbjct: 124 EGANPPPDACEGYSFAGFHLDIGRRHLTGPDHPSIPLTGGEFALLHVLLDSAGRVLSRDQ 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+           + ID  I ++RKK+         I+TV   GYVL
Sbjct: 184 LLDATQGREAHLFDRSIDNQISRIRKKIELDPKQPQIIKTVRNGGYVL 231


>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 127/228 (55%), Gaps = 1/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL++ED++ LA +I  +L   ++N      G+ G+  C+   +DA+I+D  L  + G 
Sbjct: 1   MNILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLYDAVIMDGMLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR    S PV +L+  +S  DKV GL +GADDY++KPF   EL+AR+RA+ RR  
Sbjct: 61  EVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL+++L    +   GH +HL+GKE++++ +L       ++K+  L  ++ 
Sbjct: 121 DVVIDEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              E     ++ +I  LRKK+S+       I T+   GY L + A D+
Sbjct: 181 TDGEASENSVEAYISFLRKKISHVHSTVQ-ITTLRMLGYRLEQFANDD 227


>gi|257871018|ref|ZP_05650671.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
 gi|257805182|gb|EEV34004.1| two-component system response regulator [Enterococcus gallinarum
           EG2]
          Length = 235

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/235 (34%), Positives = 121/235 (51%), Gaps = 11/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE--FDAIILDLGLTDIPG 59
           RIL++ED+++LA  I+  L  E ++      G++ + L       FD I+LD  L    G
Sbjct: 4   RILIVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQTDLFDLILLDWMLPIYDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             V R +R      P+ +++  +   D V GL  G DDY++KPF  EEL ARIR I RR 
Sbjct: 64  ITVARRIRKES-DIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122

Query: 120 RGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +  AQ        +V G+L +++    V+V G  I LT KE+ ++  L        T++ 
Sbjct: 123 QREAQQQKNQQNQLVVGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDE 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            LN ++    + +  ++DV+I  LR KL +  G    I TV G GYVLR  A +E
Sbjct: 183 LLNEIWGYEYDGQTNVVDVYIRTLRNKL-DVCGKGKMIATVRGLGYVLR-TAHEE 235


>gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia
           thailandensis MSMB43]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 122/232 (52%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+      ++  L    F    T  G  G+   +   +D  ILD+ L    G+
Sbjct: 1   MKVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+R LR     TPV  L+    ++D+V+GL+ G DDY++KPF+  EL+AR+R+++RR +
Sbjct: 61  TVVRELRRTH-RTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRRGQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   +L ++L  +    QG+ I LT KE+ ++ LL  R+   L + +  + ++D
Sbjct: 120 ATDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRRGEILPRSLIASQIWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
              + +  ++D  I ++R K+         I TV G GYVL +    E CE 
Sbjct: 180 INFDSDSNVVDAAIKRVRAKVDQD-YEPKLIHTVRGMGYVLEQRG--EPCES 228


>gi|160935974|ref|ZP_02083348.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441216|gb|EDP18933.1| hypothetical protein CLOBOL_00871 [Clostridium bolteae ATCC
           BAA-613]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 127/225 (56%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I++IED+K + + IE +L  + + V   + G DG++L +  + D ++LDLGL D+ G E+
Sbjct: 7   IIIIEDEKNICNFIETVLSPQGYQVTCANTGTDGLKLIESLKPDVVLLDLGLPDMDGLEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---RS 119
           ++ +R    + P+ ++S  +    KV  L  GADDY++KPF   EL+ARIR  +R   R+
Sbjct: 67  IQEVRSTS-ALPIIVISARTLERSKVAALDLGADDYLTKPFGTAELLARIRTALRHSQRA 125

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G        GDL ++ + + V+V+G  +HLT  EY+++ LL+      +T E  ++ ++
Sbjct: 126 AGTQSLKYEVGDLLIDFERRLVKVKGQDVHLTQIEYKLVSLLAQNAGKVMTYESIISKIW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + + +I+ V +  +R+KL        YI T  G GY +RE 
Sbjct: 186 GPFADSDNQILRVNMAHIRRKLEENPAEPQYIFTEIGVGYRMREE 230


>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ +DD+ +   IE+ LK+E + V     G + IEL +  E   +ILD+ +  + G   
Sbjct: 6   VLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIMMPKMDGITA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
              +R  + + P+ +LS  +   DK+ GL  GADDYI+KPF+  EL+AR+++ +RR    
Sbjct: 66  TFKIRAER-NIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRRYVNF 124

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++  +   L ++  A+ + V G  + LT  EY++ ELL        +       ++
Sbjct: 125 GTAGEAAPLVEGLELDAAAREIRVDGEPVKLTPTEYKITELLLKNAGRVYSISDIYELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +        I+ V I K+R+K+        Y++ VWG GY + +
Sbjct: 185 NEPAYNAENIVAVHIRKIREKIEADPKNPRYLKVVWGLGYKIEK 228


>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/229 (34%), Positives = 131/229 (57%), Gaps = 1/229 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ +++++LK  N++V     G+D  +      +D +ILD+ +  + GF
Sbjct: 1   MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVYDGVILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R      PV +L+  +  +DK+ GL  GADDY++KPF  +EL+ARIRAI RR  
Sbjct: 61  TVLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  GD ++N     +   G  + L  KEYQ++ELL   +N  ++ E+ +  ++ 
Sbjct: 121 EAVSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
              + E+ ++ V I  LRKKLS    G + I+ V  +GY+L    +D T
Sbjct: 181 YDTDTEISVVWVNISYLRKKLSQIGSGVS-IKAVRNQGYILEYKEEDRT 228


>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV +    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|229073271|ref|ZP_04206423.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228709846|gb|EEL61868.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 238

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 8/210 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L+ ENF V     GE  ++  +    D  I+D+ +  + G+++++ +R   +  P+ IL
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIMMPKMDGYQLIKKIRET-LQLPILIL 79

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-------QSLIVTGD 131
           S  S   DK+ GL  GADD+I+KPF+  E++AR++A +RRS           +  I  GD
Sbjct: 80  SAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVEGKEKQIHMGD 139

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L ++ ++ T+      I L+  EY+++ L         TK+     ++      +   I 
Sbjct: 140 LVLDHNSCTLYKSSESISLSATEYKILTLFMEEPGRIFTKKQIFESVWSDYYCADDNTIM 199

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           V I +LR+KL ++     YI+T+ G GY  
Sbjct: 200 VHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
           17244]
          Length = 226

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 124/227 (54%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +A  I      E ++    + G   IE+CK  +FD I++D+ + ++ GF 
Sbjct: 3   RILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +R +R  K  TPV +LS      D++ G + GADDY+ KPF+ +EL+ R+ AI++R++ 
Sbjct: 63  AVREIRKTK-DTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKRTQN 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    +++I    ++++L A+ + + G  + LT KEY ++  L   +   L++E  ++ 
Sbjct: 122 KSDKEKENIINIDGINIDLAARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKIIST 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +D  I  LRK L   +   N I T+ G GY   + 
Sbjct: 182 VWGYDYYGDDRTLDTHIKLLRKNLGPYS---NRIVTLRGVGYRFEKE 225


>gi|146307260|ref|YP_001187725.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina ymp]
 gi|330503403|ref|YP_004380272.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina NK-01]
 gi|145575461|gb|ABP84993.1| two component heavy metal response transcriptional regulator,
           winged helix family [Pseudomonas mendocina ymp]
 gi|328917689|gb|AEB58520.1| two component heavy metal response transcriptional regulator
           [Pseudomonas mendocina NK-01]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGTYLQQGLTEAGFNVDRVMTGTDALQHALSEAYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRMLRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221


>gi|323184776|gb|EFZ70147.1| phosphate regulon transcriptional regulatory protein PhoB
           [Escherichia coli 1357]
          Length = 209

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 20  LKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAK--ISTPVCI 77
           L+   F     +  +  +        D I+LD  L    G + ++ L+        PV +
Sbjct: 2   LEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVM 61

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-QSLIVTGDLSVNL 136
           L+     ED+VRGL++GADDYI+KPF+ +ELVARI+A++RR    A + +I    LS++ 
Sbjct: 62  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDP 121

Query: 137 DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICK 196
            +  V      + +   E++++           ++E  LNH++      E + +DV I +
Sbjct: 122 TSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRR 181

Query: 197 LRKKLSNAAGGKNYIETVWGRGYVL 221
           LRK L    G    ++TV G GY  
Sbjct: 182 LRKALEP-GGHDRMVQTVRGTGYRF 205


>gi|320108041|ref|YP_004183631.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319926562|gb|ADV83637.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 128/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  +   ++  L    ++V   D     +E    + FDA+I+DLGL D+ G 
Sbjct: 1   MRLLLVEDELEIQGFVKQSLIDAGWDVQTADDATSALEEVTKHVFDALIIDLGLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR + I  PV ILS   S++++V+GL+ G DDY++KPF   ELVARIR +VR + 
Sbjct: 61  DLILRLRRSGIKAPVLILSARRSVDERVKGLELGGDDYLTKPFAAAELVARIRNLVRLAS 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S I   DL ++   +     G  ++LT +E+ ++E L       +T+ M L  ++
Sbjct: 121 QKENISHIRIHDLEIDAVKRRATRNGQLLNLTPQEFLLLEYLCRNAGRVVTRSMLLAEVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + +P+  ++DV + +LR K+ +  G ++ I+T+ G GYV +
Sbjct: 181 GMQFQPDTNMVDVHMYRLRGKI-DPEGSESRIKTLRGVGYVFQ 222


>gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1003]
 gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1003]
          Length = 219

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   IE  L+   F V     G           +  ++LDLGL  +PG 
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKASLALDTTSYALVVLDLGLPRVPGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  ELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI   DLSVN  A+ VEV G R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL         I TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKLGAN-----LIRTVRNIGYVVEKE 219


>gi|284047474|ref|YP_003397813.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951695|gb|ADB46498.1| two component transcriptional regulator, winged helix family
           [Acidaminococcus fermentans DSM 20731]
          Length = 238

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 14/216 (6%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
               E F V     GE+ + + +  +   ++LDL L  I G +V R +R    + P+ +L
Sbjct: 22  YFTKEQFTVLAARDGEEALRIFRKEQPQLLVLDLMLPKIDGRDVCRTIRQDS-TVPIIML 80

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--------RGHAQSLIVTG 130
           +   +  D++ GL+ GADDY++KPF+  ELVAR+RA++RR+         G  +++I  G
Sbjct: 81  TARDAEFDRLMGLELGADDYVTKPFSMRELVARVRALLRRTYGAYGQQKEGAPETVIRAG 140

Query: 131 DLSVNLDAKTVEVQGH-----RIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP 185
            L ++LD   +  +        I LT  E+ ++E+L         +   + + +    + 
Sbjct: 141 TLELDLDRHILRRKEEGDGWKPIELTPIEFNLLEVLMKSPGHVYNRLQLMENSHGFAFDG 200

Query: 186 EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + ID  I  LR+K+        YI TV+G GY  
Sbjct: 201 YERTIDAHIRNLRRKIEPDTKNPRYILTVYGIGYKF 236


>gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202]
 gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202]
          Length = 236

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     + +I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKMIDANGLILDPVSQRVSFGDSILDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGVDRFVQTVRGTGYRFSTRA 231


>gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +A  +   L    F V +   G+ G  L     +D II D+ L    GFE
Sbjct: 3   KILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTGKRLISSNLYDLIITDIILPHHNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R ++   +  P+ +L+ + + +DK+ G  +GADDY+ KPF+  EL ARI  +++R+  
Sbjct: 63  ITRFVKEKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLLKRNSN 122

Query: 122 HAQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H ++     +   DL ++++ +TV   G  I LT KE+ +++ L       L +      
Sbjct: 123 HPENKVPDELKYHDLCMHVNTRTVSRSGKEIRLTPKEFSLLKYLMENPERVLPRAEIAEI 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++D   +     IDV+I  LR+K+      K  I T  G G++L+
Sbjct: 183 VWDTHFDTGTNFIDVYINYLRRKIDKEFDNK-LIHTNPGVGFILK 226


>gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
 gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
           HKI 454]
          Length = 240

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/235 (28%), Positives = 116/235 (49%), Gaps = 6/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DD+ L   +   L  +   V V           +    D I+LDL +  + G  
Sbjct: 4   QILVIDDDQELRDLLRDYLTRQGIEVSVLHDAASLERRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRS 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +     G  +++   +++   G  + L+G E+ ++++ +     TLT+E  L
Sbjct: 124 IPSAAPEQREPFNFGRFTLDFQTRSLMQDGKPVALSGSEFALLKIFANNPMRTLTRERLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
             L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +    
Sbjct: 184 ELLHGPEYDGTDRGIDVQVWRLRRTLETDPSAPRFIQTVRGRGYVFVPDGEGHAA 238


>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
 gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
           13479]
          Length = 223

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL+++D+K +   I+L L    ++      G + +E+ +   FD I+LD+ L  I GF
Sbjct: 2   IKILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R   +  PV  ++    + D+V+GL+ GADDY+ KPF+  ELVAR+ A++RR  
Sbjct: 62  DIMEYIR--PMEIPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLRR-Y 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  GD+ V+++A+TV+  G  + LT KE+ ++ L    +N  L +E     +++
Sbjct: 119 NKTERRLSAGDVVVDVEARTVKKAGRPVELTNKEFLLLVLFLRNRNVALFRETLYEKVWE 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           G    + + +D+ + +LRKKL+   G    +  V+  GY L 
Sbjct: 179 GEYSGDSRTLDLHVQRLRKKLNWENGEYPRLVAVYKVGYRLE 220


>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 115/222 (51%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDD A++  +   L+           G   +E+ +  + + I+LD  +  + G  V
Sbjct: 4   ILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMDGHGV 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR LR    +   PV  L+  +  ED+++GL+ GADDY++KPF+ +ELV R+ ++++R  
Sbjct: 64  LRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLKRCE 123

Query: 121 GHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               S+I   G  + + +A    +    + LT  E++++  +  R+  TL +   L+ ++
Sbjct: 124 HTPGSVIAEYGPFTFDKNALKFYIDKEEVDLTATEFKLMIHMVEREGQTLNRNDLLSCVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + + +D  + +LR+KL+  A   + IETV   GY  
Sbjct: 184 GYSHQAQSRTLDTHMKRLRQKLAPYA---DCIETVRSIGYRF 222


>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
 gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 115/228 (50%), Gaps = 10/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L +E + V   + G + +E  K Y+   IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       +V G  +GADDYI+KP   + L+++++A++RR
Sbjct: 66  EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125

Query: 119 SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +       +++  G+L +  +   +  +G  I L  KE++++ LL+ +      ++  L
Sbjct: 126 LKSDENAVNTIVKIGNLVIYKEEYKITNKGKEITLPRKEFELLSLLATKPGKVFKRDEIL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + ++        + IDV I KLR+K+ + +      +TV G GY   +
Sbjct: 186 DKVWGNEVVVGGRTIDVHIRKLREKIGDKSF-----KTVKGVGYKFVD 228


>gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582]
 gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582]
          Length = 220

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 85/223 (38%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDDK +   I + L    FN+     G  G +      +DA+ILDL L  I G 
Sbjct: 1   MRILLIEDDKIIGDGINVGLTKLGFNLDWFTDGVIGRQALTSAPYDAVILDLSLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R A    PV IL+   ++E +V GLQ+GADDY+ KPF   E+ AR++A++RR  
Sbjct: 61  DLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRRH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +V G L  +  A++V + G  + LT +E  ++ELL   K   L + +    LY+
Sbjct: 121 GQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE     ++V I  LR+KL N       I TV G GY L +
Sbjct: 181 WDDEVSSNAVEVHIHHLRRKLGNG-----VIRTVHGVGYTLGD 218


>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N    + GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL  A     ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKAHFPIDHHLKTVYGVGYRWVDT 223


>gi|207723030|ref|YP_002253448.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206588219|emb|CAQ18783.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
          Length = 249

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 17/246 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAI 48
           MR+LL+EDD  +  ++   L+ + F +     GE  ++                  FD +
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAVGAPGAAAAAAESSASMFDLM 63

Query: 49  ILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           +LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL
Sbjct: 64  LLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQEL 123

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R    
Sbjct: 124 AARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGKV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+       
Sbjct: 184 WSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPTP 238

Query: 229 TCEYLE 234
             E  +
Sbjct: 239 PAEPAD 244


>gi|134097367|ref|YP_001103028.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009075|ref|ZP_06567048.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909990|emb|CAM00102.1| putative two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 231

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 7/232 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L+   + V +   G+  ++       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLQFNGYQVELAADGQQALDWLAAQRPDAMVLDVMMPRVDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EV R LR      P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVARRLRSTGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                R      +   DL ++   + V      I LT  E+ ++ELL       LT+   
Sbjct: 121 PSDVDREDRPEPLRFSDLELDPGTREVRRGERPISLTRTEFALLELLMAHPKQVLTRSRL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  ++          ++V+I  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 LEDVWGYDFPTSGNALEVYIGYLRRK-TEAEGEPRLIHTVRGVGYVLRETPP 231


>gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/212 (34%), Positives = 115/212 (54%), Gaps = 4/212 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F+VY    G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFDVYTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA---QSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A      I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           FI  LR+KL    G    + TV G G+VLR+ 
Sbjct: 203 FIGYLRRKLEAN-GAPRLLHTVRGVGFVLRQQ 233


>gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 236

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 26  LERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   S   +   I  G L
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 145

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 205

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A G    + TV G G+VLR
Sbjct: 206 FIGYLRRKLE-AGGAPRLLHTVRGVGFVLR 234


>gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
 gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 9/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L +E + V     G++G++  K      IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+       +V G  +GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVKALLRR 125

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +   +  S +  GDL +N +   +      + L  KE++++ LL+ +      +E  L+
Sbjct: 126 LKEEEEGDSSVKIGDLVINREEYKIIKDKKEMVLPRKEFELLSLLASKPGKVFKREDILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I KLR+K+ +        +T+ G GY   
Sbjct: 186 KVWGNEVVVGGRTIDVHIRKLREKIGDKKF-----KTIKGVGYKFV 226


>gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra
           [Mycobacterium kansasii ATCC 12478]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL    GG   + TV G G+VLR
Sbjct: 203 FIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 231


>gi|145594043|ref|YP_001158340.1| response regulator receiver [Salinispora tropica CNB-440]
 gi|145303380|gb|ABP53962.1| response regulator receiver [Salinispora tropica CNB-440]
          Length = 222

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  +PG 
Sbjct: 1   MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVPGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   +T       + LT KE+ ++  L       ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   I+ V +  LR+KL +       IETV G GY + E A
Sbjct: 181 ANTDPFTTIVRVTVRTLRRKLGD----PPLIETVVGAGYRVAEAA 221


>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 230

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G++ 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIMMPKMDGWDT 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +       V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 KQ--IQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDT 223


>gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 124/221 (56%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK LA ++   L      V +   GE+         +D  ILD+GL  + G 
Sbjct: 1   MRILLVEDDKVLADALSRALVQSAHAVDIVSTGEEADHALALGIYDLAILDIGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K + PV +L+   +++D+VRGL  GADDY++KPF+  EL AR+RA++RRS 
Sbjct: 61  DVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRST 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +  G L  +   + V      + L+ +E  ++ELL +R+   + KE  +NHLY 
Sbjct: 121 -NSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     I+V + +LRKKL         I TV G GY++
Sbjct: 180 WGDEVGDNAIEVNVYRLRKKLEPLGCE---IRTVRGMGYLM 217


>gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
 gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 121/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + LK     V   +  ++     +    D  ++DLGL D  G 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKELGHQVDAAEDAKEADYFLRESCPDIAMVDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++  R  +I+ PV +L+   S ++KV+ L SGADDY++KPF+ EELVAR++A++RR+ 
Sbjct: 61  SMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++      ++L  K   V G  + LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  E   IDV + +LRKK+       + I TV G+GY    N 
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQQFHAN-DVIVTVRGQGYRFDVNG 224


>gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 242

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ +   +   L    F  +    G +  ++      D ++LDL L    G  
Sbjct: 6   QILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTLPGEDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S PV +L+      D++ GL+ GADDY++KPF   EL ARIR+++RR+  
Sbjct: 66  LCRNLRAQS-SLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTNA 124

Query: 122 HAQSL-------IVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              ++       ++     ++L     V   G  + L+G E++++++     N  L ++ 
Sbjct: 125 LPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVLNRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
            L        +P  + +D+ I +LR+KL + A     I+TV   GYVL      E+
Sbjct: 185 LLELTRGRDADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVLSATVSIES 240


>gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 232

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 17/232 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRSDRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGR 124

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   +      ++  G+L ++     V   G  + LT  E +++   S    T L+
Sbjct: 125 ANGGRDESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGTVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++  L  +++     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 RDKLLERVWEYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 231


>gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
 gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis
           60-3]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 120/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D++ L   +   L SE + V      E+ +++    E+  +ILD+ +  + GF+
Sbjct: 7   KLLIVDDEEDLREILTFNLASEGYQVSTAANAEEALKM-PLEEYHLLILDVMMPGMNGFK 65

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +   +R   K++TP+  L+   +  D + G   GADDY++KPF+ +EL ARI+AI+ R  
Sbjct: 66  LAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRFL 125

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S I  G L ++LDAK V V G  I LT KE +++ LL+       ++E  L+
Sbjct: 126 QSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFSREEILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++        + IDV I ++RKKL     G   I    G GY L E   
Sbjct: 186 RVWREDVFVLERTIDVHITRIRKKLR---SGGIKIINRSGFGYCLVEEEP 232


>gi|255305157|ref|ZP_05349329.1| DNA-binding response regulator [Clostridium difficile ATCC 43255]
          Length = 228

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +L + +E  ++   F+V V    E+ +++ K   +D ++LD+ L D  GF++
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSLPDGDGFDI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A  + P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR    
Sbjct: 64  CKRVREAS-NVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNFT 122

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +++   + + +++V L    V      + LT  EY+++ LL   KN  LT++  L+ L+D
Sbjct: 123 SENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLWD 182

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G     +   + V++ +LR K+ +       + TV   GY  
Sbjct: 183 GNGSFVDDNTLSVYVRRLRNKIEDNPENPKILLTVRRMGYKW 224


>gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
 gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
          Length = 220

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTPYALLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|75907669|ref|YP_321965.1| two component transcriptional regulator [Anabaena variabilis ATCC
           29413]
 gi|75701394|gb|ABA21070.1| two component transcriptional regulator, winged helix family
           [Anabaena variabilis ATCC 29413]
          Length = 224

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      ++ +L    + V   + GE    L    ++D +ILD  L  I G 
Sbjct: 1   MRILLVEDDYEQLEPLQGILSEAGYIVDTAEDGEIAEWLISQKDYDLLILDWMLPTISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R  R +  + P+ +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ RR  
Sbjct: 61  SLCRQYRCSGKTAPILMLTARDTTPDKVMGLDAGADDYLVKPADLVELLARVRALARRVP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL ++L   TVE +  ++ L+ +E +++E L    N  LT+      L++
Sbjct: 121 NWQGDSLRVADLQLHLAYLTVEREQLKVELSPREARLLEYLMRHPNQVLTRSQIEEALWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              EPE   + V + KLR +L        +I TV+G GY L   
Sbjct: 181 WGMEPESNALTVLVRKLRHRLQQVDAA-EWIRTVYGMGYRLNPQ 223


>gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614]
 gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614]
          Length = 250

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 116/235 (49%), Gaps = 14/235 (5%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           L++EDD+ +   I   L+++ F V+    G +G+   +  + D I LDLGL  I G E  
Sbjct: 17  LVVEDDEDIRALIVYTLETQGFEVFAVGSGLEGVAAVRDRQPDLITLDLGLPGIDGIEAC 76

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR--- 120
           R +R    +  V +++      D++ GL++GADD+I+KPF+  EL AR+ A+ RR R   
Sbjct: 77  RRIREISDAY-VVMITARDDEIDRLLGLETGADDFIAKPFSARELKARVNAMFRRPRTGG 135

Query: 121 ---------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                         L+V G L V+++ +     G  + LT  E+ ++  L    +   ++
Sbjct: 136 GAQRPDAPAEDPHELLVHGPLRVDVEGRRAFRDGQELVLTRTEFDLLTELMRAPSRVWSR 195

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENA 225
           E  L  ++      +  +++V +  LR+KL+    G   +I TV G GY +   A
Sbjct: 196 EALLRSVWGTDWASDTHLVEVHVGNLRRKLAAGTDGSTRFIRTVRGVGYRMELPA 250


>gi|331091977|ref|ZP_08340809.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402876|gb|EGG82443.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 250

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 14/238 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++++DD  +  ++ ++L++EN+ V   D GE  +EL      D +ILD+ + +  G  
Sbjct: 14  KIMVVDDDADIRQALRVLLETENYEVSEADNGEMALELLDET-VDLMILDIMMPEKDGLS 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R  K + P+  L+  ++  DK  G  SG DDY++KPF+K E++ R+ A++RR   
Sbjct: 73  TCREVRE-KYTFPILFLTAKTTENDKYVGFLSGGDDYLTKPFSKMEVLTRVSAMLRRYHV 131

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +  I   DL ++ +   V      I LT  EY ++  ++   N   T E  
Sbjct: 132 YQGKGSESKEKYICIKDLKIDRNVSRVFQGDKEIVLTNTEYDILVFMAKNPNRVFTLEEL 191

Query: 175 LNHLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              ++       V   + V I  LR+KL++ +    YI+ VWG+GY +     DET E
Sbjct: 192 YEKIWGEPYHFSVNATVMVHIRNLRRKLNDTSQASRYIKNVWGKGYAIV----DETNE 245


>gi|317402238|gb|EFV82826.1| osmolarity two component response regulator [Achromobacter
           xylosoxidans C54]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 107/227 (47%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 7   KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLPSRITRYAPDLLVLDRMLPGGDGAD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 67  ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRKRG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +  G    +   + +   G  + LTG E  ++E L       L++E  L  
Sbjct: 127 PSALTKDAPVAFGPFLFDPSTRQLSRDGTVVKLTGGEINLLEALVRNAGKPLSRERLLAL 186

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D    E   + ID+ I +LR+ + +      +I+TVWG GY    
Sbjct: 187 ARDDDAGERNDRAIDIAILRLRRVIEDDPKQPRWIQTVWGIGYRFSP 233


>gi|159037095|ref|YP_001536348.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915930|gb|ABV97357.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 222

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  +PG 
Sbjct: 1   MRVLVVEDERNLADAITRGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGMPGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGALTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   +T       + LT KE+ ++  L       ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRTATRADVPVDLTNKEFGVLHELVKAGGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   I+ V +  LR+KL +       IETV G GY + E A
Sbjct: 181 ANTDPFTTIVRVTVMTLRRKLGD----PPLIETVVGAGYRVAEAA 221


>gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
 gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L   +  +L    + V +   GEDG  L +   +DA++LDLGL  I G 
Sbjct: 1   MRILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGLPKIDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++ R    + PV IL+      +KV G  +GADDY++KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ + I  G L V+  A    V G  I LT  EY+++  L   +   + +   + H+YD
Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI +LR+K+         I+T  G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRLRRKIGQD-----RIQTERGLGYRL 216


>gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein
           prrA [Mycobacterium tuberculosis H37Ra]
 gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA
 gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA
 gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
           From Mycobacterium Tuberculosis
 gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
 gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
           Comlexed With Mg2+
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A GG   + TV G G+VLR
Sbjct: 203 FIGYLRRKLE-AGGGPRLLHTVRGVGFVLR 231


>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 226

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA  +EL L  E + +   D G  G+E+ +  E D ++LD+ +  I G E
Sbjct: 3   KILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R      PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  ++R   
Sbjct: 63  VLRRIRKTS-DLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRTV 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I  G LS++     V      I LT +E+ ++++L   KN  LT+++ +  +
Sbjct: 122 IEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYIGETNVIDVYIRFLRTKIDDAFKTK-IITTVRGVGYVIKDE 226


>gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 220

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 81/225 (36%), Positives = 123/225 (54%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   I+  L  E + V     G   IE      F A+ILDLGL D+ G 
Sbjct: 1   MRILLVEDDPLLGDGIKTALVREAYTVDWFTEGHHAIEAAHNETFSAMILDLGLPDMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR    + P+ IL+   ++E+++ GL +GADDY+ KPF+ +EL+AR+R + RR+ 
Sbjct: 61  TVLKRLRE-STALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   +  G LS++  + +V   G  + L  +EY ++  L+   +  L++    + LY 
Sbjct: 120 GRASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V +  LRKKL      K+ I TV G GY L  +A
Sbjct: 180 WGEEVASNAVEVHVHHLRKKLD-----KSLIMTVRGIGYRLDPHA 219


>gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
 gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1]
          Length = 226

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 112/223 (50%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ LA  I+  L  E F+ Y     ED     K ++   I+LD+ L    G+  
Sbjct: 4   ILLVEDNQELAKLIQAFLCKEGFSYYYASSAEDAFVWLKVHQPQVIVLDIMLPGSDGYAF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            +++R      P+ ++S  S+  DK+ G + GADDY+ KP + + L A+IRAI+ R    
Sbjct: 64  CQSVRQTS-DVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSKD 122

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            QS   I +G + +++    V ++   + L  KEY ++ L       TL K+   N ++ 
Sbjct: 123 KQSDQIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLFNEIWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E E + + V I  LR K+   +     I+TVWG GY   E
Sbjct: 183 MDSESENQTLTVHIKMLRSKIEKDSRNPQRIQTVWGIGYRYEE 225


>gi|315659877|ref|ZP_07912736.1| response regulator [Staphylococcus lugdunensis M23590]
 gi|315495165|gb|EFU83501.1| response regulator [Staphylococcus lugdunensis M23590]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +I+D+  +        + E + V     G++ ++L +  + D  ILD+ + +  G+ 
Sbjct: 3   RIAIIDDEPDIRDICRTYFEFEGYEVLTASNGQEALDLLE-QDVDLFILDIMMPEKDGYA 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ ++  ++  P   L+  ++  D + GL  GADDY+ KPF+  ELV R + I+ R+  
Sbjct: 62  VIKEMKARQLDIPYIYLTAKTTESDTIYGLMLGADDYVKKPFSPRELVIRAKNILSRTVK 121

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H+    Q  +  G L+++   KT  +    I L  KE+ ++  L+  +N  L+K   L  
Sbjct: 122 HSSARTQGALSFGALTLDNLTKTATINNETITLRIKEFDLLWYLATHENVALSKTDLLEQ 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++      ++  ++V I +LR KL         I TVWG GY  
Sbjct: 182 VWGYDYYEDMNTLNVHIHRLRDKLEQHHYKDYIISTVWGLGYKF 225


>gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224


>gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
 gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC
           43969]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 80/228 (35%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLREYLSGEGFNAELVLTGKEGIDRALSGDYTALILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 119

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H         +I  GDL++N   ++ E QG    LT  E+ ++ELL    +  +TK+  
Sbjct: 120 EHPDLSSTDDGVITHGDLTLNPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 180 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 227


>gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 14]
          Length = 239

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 229

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 78/231 (33%), Positives = 118/231 (51%), Gaps = 8/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD A+    +  L+S  + V   +  E   +     E + +ILD+ L    GF +
Sbjct: 2   IYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVMLPGEDGFSI 61

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ LR        P+ +++  SS  D VRGL  GADDYISKPF   E ++R+RA +RRS 
Sbjct: 62  LKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALRRSA 121

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A  +++   ++ ++     V V G  + LT KEY ++ LL    N  +T+E  L  ++
Sbjct: 122 PEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQVVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
                 E + +D+ I  LRKKL +A     YI TV   GY L   E A +E
Sbjct: 182 GTDISVESRTVDMHIRTLRKKLGDAG---KYICTVRKVGYKLTDEEEAGEE 229


>gi|313900334|ref|ZP_07833828.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
 gi|312954883|gb|EFR36557.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED + LA  I   LK + F V+  + GE  +      E   ++LD+ L  + GF V
Sbjct: 4   ILLVEDHRELAQLIVSFLKRDGFQVHHVESGEAALSYLAQTEVRLLLLDIMLPHMDGFTV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R  K + P+ I+S      D++ G + GADDYI KP + + L A+IRA+++R+   
Sbjct: 64  CKKVREHK-AVPILIMSARKDRNDQLNGYELGADDYIEKPVDPQILAAKIRAVLQRTSDL 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H +  I    + +        V G+ + L  KE++++ LL      TL KE     ++  
Sbjct: 123 HRKETISCCGVVIERAQHRAFVDGNLMELNAKEFELLTLLVSNAGKTLRKEYIFASIWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + + V I  LR K+         I+TVWG GY   E
Sbjct: 183 DSFSEQQTLTVHIKMLRDKIEKNPKQPQRIKTVWGVGYRFEE 224


>gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
 gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA]
          Length = 219

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 3/219 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  LA  +   L + ++       G    +  +    + ++LDL L    G E+
Sbjct: 2   ILIIEDEPKLAALMTDYLHAAHYETEWLADGTHATQRVRETAPELVLLDLMLPGKDGLEI 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++      D++ GL+ GADDY+ KPF+  ELVARI+ I+RR +  
Sbjct: 62  CREVRAFS-EVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARIKTILRRVQRG 120

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +    L ++  A    ++G R+ LT  E++++  L+      L++   L  +YD  
Sbjct: 121 G--GVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDDH 178

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                + +D  I  LR+K+   + G   I +V+G GY L
Sbjct: 179 RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRL 217


>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
          Length = 250

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 120/234 (51%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  +++L L+   + V V   G DG+E  +    D +ILD+ L ++ G  +
Sbjct: 21  VLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVMLPELDGIGL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R      PV ++S      D V GL++GADDY+ KP +   +VARIRA++RR    
Sbjct: 81  CRRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     S G A  ++V GDLSV+     V   G  + LT  E +++   +    + 
Sbjct: 140 PDPEGPAAAGSSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +   L  ++D   E + +++D+ + +LRKK+     G   IETV G GY L 
Sbjct: 200 LDRRRLLREVWDYGWEGDTRVVDLCVLRLRKKI-----GSGRIETVRGFGYKLV 248


>gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus
           ATCC 19977]
 gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium
           abscessus]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +     +  DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFEVNTASDGAEALRCATEHRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS---LIVTGDL 132
           C+LS  +S++D+V GL++GADDY++KPF   ELVAR++A++RR    A S    I  G L
Sbjct: 83  CVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETITVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V +  +   + G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A G    + TV G G+VLR
Sbjct: 203 FIGYLRRKLE-AGGAPRLLHTVRGVGFVLR 231


>gi|110679831|ref|YP_682838.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
 gi|109455947|gb|ABG32152.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114]
          Length = 239

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 154/228 (67%), Positives = 185/228 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + S+ELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLSNA  G+NYIETVWGRGYVLR+    +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATNGENYIETVWGRGYVLRDPEPSQ 228


>gi|57234028|ref|YP_181944.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
 gi|57224476|gb|AAW39533.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
          Length = 225

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  LA  I   L+   + V     G+ G E+   Y FD IILD+ L ++ GF
Sbjct: 3   MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V   +R     TP+ +L+      DKV GL  GADDY+ KPF+  EL+AR+RA++RR+ 
Sbjct: 63  AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I    L++N   +     G  I LT KEY ++E L L KN  +TK M   H+++
Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +    +I+V I ++RKKL N     + I+TV G GY++ +
Sbjct: 183 SESDIFSNVIEVLISRIRKKLDNNNKN-SLIKTVKGLGYIIED 224


>gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 234

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ EDDKA+  SI + LK+ N++V     G+D +E  +  E   +I+DL + ++ G E
Sbjct: 5   KILVAEDDKAIRDSIGIYLKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            +  +R      P+ ILS  S   DKV GL  GADDYI+KPFN  EL+AR+ + +RR   
Sbjct: 65  AILKIREKSY-VPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYK 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S+   +  I  G + +N   KTV V G ++ LT  EY+++ELL    N   + +    
Sbjct: 124 YQSKEENERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++     E K + V I ++R+K+        Y++  WG GY   + 
Sbjct: 184 KVWN-EPAIEAKTVTVHIRRIREKIEIDPKKPLYLKVAWGLGYKFVKP 230


>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
          Length = 240

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  + + +   L+     V     G+           D I+LDL L    G  +
Sbjct: 7   ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLTL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR  K   PV +L+  S   D+V GL+ GADDY++KPF+  EL+ARI+ I+RR+R  
Sbjct: 67  CRQLRA-KSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARSL 125

Query: 123 AQSLI-------VTGDLSVN-LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             +L             ++N L    +   G  + L+G EY+++ +     N  L ++  
Sbjct: 126 PVNLQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++       +P  + IDV + +LR++L +       I+TV G GYVL    +
Sbjct: 186 VDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVLSVPVE 237


>gi|254391808|ref|ZP_05007003.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
 gi|326443845|ref|ZP_08218579.1| putative two-component system response regulator [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705490|gb|EDY51302.1| two-component system regulator [Streptomyces clavuligerus ATCC
           27064]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/237 (31%), Positives = 118/237 (49%), Gaps = 17/237 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK------FYEFDAIILDLGL 54
           MR+LL+EDD  +A ++  +L    F V     GE+ +             F  I+LDLGL
Sbjct: 1   MRLLLVEDDDHVAAALSAVLGRHGFQVVHARNGEEALRAVLPAAHPGRPPFGVILLDLGL 60

Query: 55  TDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
            D  G++V   LR    STPV +++  S +  ++ GL  GADDY+ KP++  EL+ARI A
Sbjct: 61  PDQDGYQVCGKLRKI-TSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHA 119

Query: 115 IVRR------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
           + RR      +   A   +  G +++ L  + V V G  + LT KE+ ++ LL+ R    
Sbjct: 120 VSRRGGPGDDAPAPAGQALRLGPMTIELSTRRVSVDGTEVQLTRKEFDLLALLAQRPGVV 179

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E  ++ ++    E   + ++V +  LR KL         +ETV G GY L   A
Sbjct: 180 FRREQIISEVWRTSWEGTGRTLEVHVASLRAKLRM----PALVETVRGVGYRLVAPA 232


>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
           abscessus ATCC 19977]
 gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
           abscessus]
          Length = 227

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +  SI   L++E + V   D G D +  C+    D ++LD+ L  + G E
Sbjct: 6   RILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVMLPGLDGLE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +  A    PV +L+   +  D + GL  GADDY+ KPF+   LVAR+ A++RR+  
Sbjct: 66  VCRQV-QAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTHR 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + +  G + +++  + V  +   +HLT  E+ ++  L+      ++++  L+ ++
Sbjct: 125 IAPPSTDVRIGQVRIDVSERRVYHRDDEVHLTRTEFDLLAYLADNPRVAISRDRLLDQVW 184

Query: 180 DGRDE--PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                     + +D  I  LR+KL     G+  I TV G GY L   
Sbjct: 185 GWSAGLPSGRRTVDSHIKALRRKL-----GQELIRTVHGIGYALEAP 226


>gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 221

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGYQI 218


>gi|288961137|ref|YP_003451476.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
 gi|288913445|dbj|BAI74932.1| two-component system, OmpR family, KDP operon response regulator
           [Azospirillum sp. B510]
          Length = 233

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L +  + V   + G DGI  C     D +ILDLGL D+ G E
Sbjct: 8   RILVVDDEPQIRKFLRISLSANGYEVVEAENGRDGIGACAERRPDLVILDLGLPDLDGQE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+ A+       P+ +LS  +   DKV  L  GA DY+ KPF   EL+AR+RA++R+   
Sbjct: 68  VISAIHRTAP-VPIIVLSVRAQEYDKVEALDRGAVDYVVKPFGVGELMARVRAVLRQRPA 126

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A+    +  G L ++L  + VE  G  +HL+ KEY+++ +L+   +  LT    L  ++
Sbjct: 127 DAEPPTSVTAGTLVIDLARRIVERGGAEVHLSRKEYELLAMLARHADHVLTHADLLREVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 +   + V++ +LR+KL +       I T  G GY  R
Sbjct: 187 GPAHVHDTAYLRVYVKQLRQKLEDDPNLPVLIVTEPGVGYRFR 229


>gi|212633751|ref|YP_002310276.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
 gi|212555235|gb|ACJ27689.1| Response regulator receiver:Transcriptional regulatory protein
           [Shewanella piezotolerans WP3]
          Length = 237

 Score =  248 bits (635), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PPQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
 gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
           protein) [Paenibacillus vortex V453]
          Length = 231

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 129/227 (56%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+ AL + I   L+  N++V +   GE+ +E  + Y++D I+LDL L  I G 
Sbjct: 1   MKLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + ILS  + IED ++GL  GA+DY+ KPF+  EL ARIR+++RRS 
Sbjct: 61  EVLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  GD+ VN   K   +   +  LT KEY ++E L   KN  ++ E  + H++D
Sbjct: 121 IQNDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +     +   I  L+KK+   +    +I+ + G+GY++ E+  D
Sbjct: 181 SEVDSFSNSLKYHIYSLKKKIRAVSANDEFIKNIRGQGYIISESKVD 227


>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
           ['Nostoc azollae' 0708]
 gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
           ['Nostoc azollae' 0708]
          Length = 236

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL++D+  L   +  +L  E + V     G +G +L +   +D +ILD  L    G 
Sbjct: 7   MRILLVDDEAELTDPLSRVLIREGYIVDAAYHGINGSQLAQIGTYDLLILDWMLPGKTGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+ + LR    +TPV  L+   +++D+V+GL +GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 67  EICQELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCS 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   + +V  DL ++++ +    QG  I L+ KE Q+++         L+    + 
Sbjct: 127 IEFYNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQ 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           HL+    +P   +I   I  LR+K+  A      I TV+G+GY  
Sbjct: 187 HLWPNGQQPGSNVIAALIRLLRRKIE-AGNESALIRTVYGKGYRF 230


>gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
 gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74]
          Length = 274

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G  
Sbjct: 39  RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R A+  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+  
Sbjct: 99  VLQLMRRAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 158

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ ++
Sbjct: 159 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 218

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +++++I  LR+K+    G +  I T  G GY+++ 
Sbjct: 219 SYDFGGQANVVELYISYLRRKI--DRGREPMIHTRRGAGYLIKP 260


>gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
 gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402]
          Length = 227

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++EDD+ +   I L L S  + V   D   D +           I DL L  + G +
Sbjct: 4   RIFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPKMSGID 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R      P+ ILS      DKV GL SG+DDY++KPF   EL AR+R+++RR   
Sbjct: 64  AIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRH-- 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +I T  L+V+   + V++   ++ LT KEYQ++  L   K+  + +E  LN ++  
Sbjct: 122 VTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E + +DV I  LR KL++   G  YI+T+   GY   E  
Sbjct: 182 DFIGESRALDVHIRALRSKLNDD--GHKYIKTIRSVGYRFYEEG 223


>gi|257091637|ref|YP_003165280.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048646|gb|ACV37833.1| hypothetical protein CAP2UW1_4708 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 225

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+      +   L    F V +   G DG+ L +   +D  ILD+ L  I G+
Sbjct: 1   MKILVVEDEIKTGDYLRQGLTEAGFVVDLARDGLDGLHLAQTDAYDLAILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-S 119
            VL+ +R A    PV  L+    ++D+V GL+ GADDY+ KPF   EL+AR+R  +RR S
Sbjct: 61  AVLQGIRRAGKDMPVLFLTARDQVQDRVHGLELGADDYMVKPFAFAELLARVRIHLRRGS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +      +   DL ++L  + V   G RI LT KE+ ++ELL  R+   L + +  + ++
Sbjct: 121 KTKESEYLRAADLELDLMRRRVTRAGRRIDLTVKEFALLELLLRRQGEVLPRSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +I+V I +LR K+         I TV G GYVL 
Sbjct: 181 DMNFDSDTNVIEVAIKRLRLKIDEDF-ELKLIRTVRGMGYVLE 222


>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 228

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/225 (38%), Positives = 130/225 (57%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+ +L  SI  +L+ E F V     GEDG+ L     +DAI+LD+ +  + GF
Sbjct: 6   MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  KI TPV  L+   S+ED+V+GL  G DDYI KPF   EL ARIRA++RRS 
Sbjct: 65  EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q  I    + +    K V+V G  + L+ K+Y+ +E L       L +E   + ++
Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +  V I++V++  LRKKL      K+ I+TV G GY+L+E 
Sbjct: 185 GFDSDTTVAIVEVYVHHLRKKLEPFGYQKD-IQTVRGIGYILKEQ 228


>gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016]
 gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 228

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       D        +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S G
Sbjct: 63  VCTEIKEMQ-DLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            +        + V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 121 RSPRAFEICGVHVDMASGVVKKNGSEVFLSALEYRLLLVFINNPKSIVTRSRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +      + V+I +LR+K+ N       I TV G GY L +    E
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRLGDRYASE 228


>gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 224

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 87/226 (38%), Positives = 132/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   D  E+G+   + Y  D  I+DLGL D  G 
Sbjct: 1   MRILIVEDDPILSHHLKSQLSELGNQVQCADTAEEGLFFAQNYPNDIAIVDLGLPDRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEELVAR+ A+VRRS 
Sbjct: 61  SLIKDMRSKDLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V +    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E +   I+V I +LRKK +   G +N I T+ G+GY+    A+
Sbjct: 181 -DQEGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELQAQ 224


>gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
 gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 223

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L  +I   L    + V  T  G+          +DA++LDLGL  + G 
Sbjct: 1   MRVLLVEDDAVLGDAIHRSLIKSGYAVDWTQDGQQADVALHEQVYDAVVLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR  K   PV ILS    ++D+V GL  GADDY++KPF   EL AR+RA +RRS 
Sbjct: 61  EVLRRLRQRKQLVPVVILSAREGLDDRVHGLDLGADDYLTKPFKLPELEARLRAQIRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S I  G +  +   +TV V G  +  + +E  ++E L LR    ++KE  + +L +
Sbjct: 121 QVVTSYIDFGPMRFDSTDRTVTVNGALVEFSQRELSVLEALILRSGRVVSKESLVENLCN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I+V++ +LRKKL         I TV G GY+L + +
Sbjct: 181 WDVDVGNNAIEVYVHRLRKKLEPYG---ILIRTVRGLGYLLEKQS 222


>gi|218781860|ref|YP_002433178.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763244|gb|ACL05710.1| two component transcriptional regulator, winged helix family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 235

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 110/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++ED++ L+  ++  L+  +F V     G++ I   +    D I+LDL L    G  +
Sbjct: 13  IWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGVTL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ +++      D++ GL+ GADDY+ KPF+  E+VAR++A++RR    
Sbjct: 73  CREIRTFS-AVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRRGGEE 131

Query: 123 A-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ I  G L +  +  ++ V G  + +T  E+ ++           +++  +  +   
Sbjct: 132 PHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSRDELIAKIQGR 191

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             E   + ID  I  LRKKL  A  G   IE+V+G GY  
Sbjct: 192 TYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKF 231


>gi|329577164|gb|EGG58634.1| transcriptional regulatory protein WalR [Enterococcus faecalis
           TX1467]
          Length = 234

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 118/231 (51%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D++ +A  +E+ L S+ + V     G+  +E     +F   +LD+ L DI GF+
Sbjct: 4   RILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFVLAVLDVMLPDIDGFQ 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++  R  K   P+ +L+      DK+ GL  GADDYI+KPFN  E+VARI+  +RR R 
Sbjct: 64  MVKKARE-KYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122

Query: 122 HAQ----------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           +            + I    L +N    T ++ G  I LT  E+ ++  L+ R+   +  
Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182

Query: 172 EMFLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           E+    ++  +  E     +   I +LR+KL        +I+TVWG GY +
Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKI 233


>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GA+DY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +   D+ V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   A    YI TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGN 228


>gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 220


>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
 gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
          Length = 229

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV +    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
 gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli
           BSR3]
          Length = 266

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 13/237 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L+  +   L ++ +   +   G + +   + +    ++LDL L    G ++
Sbjct: 10  ILIVEDEPKLSALLADYLHADGYATAIVADGREVVPHVRAHAPSLVLLDLMLPGRGGLDI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R LR    + PV IL+      D++ GL+ GADDY+ KPF+  E+VAR++AI+RR    
Sbjct: 70  CRELRGFS-TIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRIEQA 128

Query: 119 ------SRGHAQSLIVTG--DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                   GH  +    G     ++ +     + G  +HLT  E +++ LL        +
Sbjct: 129 ERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELRLLALLVANPGRIYS 188

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           ++  L  LYD       + +D  +  LR+KL      +++I +++G GY    +A+D
Sbjct: 189 RDFLLRRLYDDHRVVTDRTVDSHVKNLRRKLQAVRPERDFIRSIYGVGYQFELDAED 245


>gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 8801]
 gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 8801]
          Length = 237

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/228 (37%), Positives = 121/228 (53%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL ED+  L   I+ ML  EN+ V     G       +    E+   I D  L  I 
Sbjct: 1   MRLLLAEDEPDLGAIIQRMLNRENYLVDWVQDGATAWNYLEQEWIEYSVAIFDWLLPKIS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR    S PV +L+  S I+D V GL +GADDY+SKPF K EL+ARIRA+ RR
Sbjct: 61  GLELCQKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRALQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVE---VQGHR--IHLTGKEYQMIELLSLRKNTTLTKEM 173
           +     + +  G L+++    +V     QG    I LT  E++++E      N TLT++ 
Sbjct: 121 ALHIQPNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLTRDQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L  L++  D P   ++   I  LR+KL++  G K+ IETV G GY L
Sbjct: 181 LLAQLWETDDAPISNVVSARIRLLRRKLADY-GCKDLIETVHGFGYRL 227


>gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct]
 gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112]
 gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549]
 gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp.
           novicida FTE]
 gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ
           [Francisella cf. novicida Fx1]
          Length = 229

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTE-GGLSDPIKTIRGFGYVIQE 229


>gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus
           thiooxidans]
          Length = 227

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  +I + L+   + V  T  GE  ++     E+ AI+LDLGL  + G 
Sbjct: 8   MRILLVEDDRMIGEAISVALRDAAYAVDWTRDGETALQAITNQEYQAILLDLGLPKLDGC 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ +R      P+ I+S   ++ D++ GL  GADDY+ KPF  +EL+AR+RAI+RR  
Sbjct: 68  TVLQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQG 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++ +G L ++L     ++    + L+ +E+ +++ L LR    L++      LY 
Sbjct: 128 GQRSPVLSSGSLQLDLSTHIAQLGEASVLLSRREFALLQALLLRPGAILSRAQLEERLYG 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E E   ID  I  LRKKL     G   I+ V G G++
Sbjct: 188 WGEEIESNSIDFLIHALRKKL-----GAEVIKNVRGAGWM 222


>gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
 gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
          Length = 230

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +   +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSKYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
 gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
          Length = 231

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   I   L+ E F +     G++ +   +    D I+LD+ + D+ G +V
Sbjct: 5   ILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDIVMPDMDGLDV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R++R    + P+  LS      DK+ GL+ GADDY++KPF+ +ELV+RI+A  R+    
Sbjct: 65  CRSIR-NSYNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFRKVDRL 123

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +      L +N       +   ++ L+ KE+Q++ +L    N  LT+E  
Sbjct: 124 FKEWDELSPSNEKADAPLILNDKTFEAFLNSRKLDLSTKEFQILSILMRHPNHVLTREQI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +++   +  E+  + V I  +RKKL       ++I+T+WG GY   E  +
Sbjct: 184 YENVWG-DEYGEINTVTVHIKNIRKKLG---SEYDFIKTIWGIGYKYTEREQ 231


>gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
 gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
          Length = 256

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 19  QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 79  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 138

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 139 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +     +
Sbjct: 199 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGEAHAQAH 256


>gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074]
 gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074]
 gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074]
          Length = 221

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  IE  L++  F   V   GE   +      FD ++LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A+++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++  G+++++L  +        + LT +E+ ++EL        L++E  L+ ++ 
Sbjct: 123 APEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LR+KL     G + IETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRRKL-----GAHRIETVRGMGYRL 218


>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
 gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
           [Opitutus terrae PB90-1]
          Length = 216

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 130/221 (58%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L  ++   L  E + V   D G +G+   + +++DAI+LD+ L ++ G+
Sbjct: 1   MRLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR  K  TPV +L+   + +D+VRGL  GADDY++KPF+  EL AR+RA++RRS 
Sbjct: 61  TLLQRLRRTK-RTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRRSC 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G     +  GDL ++  A+TV  +G  + LT  EY +IE L+L +   +++     HL+D
Sbjct: 120 GEVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLYEHLFD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +    ++DV +  +R+K+         I T  G GY++
Sbjct: 180 EAHDSLSNLLDVHVAHVRRKIGRD-----VIVTRRGHGYLI 215


>gi|291447797|ref|ZP_06587187.1| response regulator [Streptomyces roseosporus NRRL 15998]
 gi|291350744|gb|EFE77648.1| response regulator [Streptomyces roseosporus NRRL 15998]
          Length = 222

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 124/223 (55%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 3   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIMLPGMNGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 63  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L ++  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 123 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL  A      I TV G GY L 
Sbjct: 183 DFAYDGDPNIVEVYISTLRRKLGAAT-----IRTVRGAGYRLE 220


>gi|255524864|ref|ZP_05391813.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255511434|gb|EET87725.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 240

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 7/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RILLI+D+  +   IE +LKS+ F  +     G +GI L K Y    I+LD+ L DI G 
Sbjct: 13  RILLIDDELDITDLIEEVLKSDGFKEIKKAHSGIEGINLAKKYSPHIIVLDIMLQDIDGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R    S P+  LS      DK+ GL SG DDYI+KPF+  E+  RI+A +RR  
Sbjct: 73  EVCKKIREFSYS-PILFLSSKDDEIDKILGLSSGGDDYITKPFSPREISFRIKAQIRRQH 131

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 +   ++  G+L +++D   V  +   I LTG E++++  L+   N  ++KE   
Sbjct: 132 YNKSIENTNEIVNIGNLFIDIDGGRVLKEEKEIELTGTEFKILSYLAQNLNKIISKERLY 191

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +           I V I  LR+K+         + TV G GY L + 
Sbjct: 192 EQICGEYAVGCDNTIMVHIRHLREKIEINPSMPELLLTVKGLGYKLVKE 240


>gi|207738714|ref|YP_002257107.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|206592082|emb|CAQ58988.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 249

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 17/246 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAI 48
           MR+LL+EDD  +  ++   L+ + F +     GE  ++                  FD +
Sbjct: 4   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAVGAPGAAAAAAESSASMFDLM 63

Query: 49  ILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           +LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL
Sbjct: 64  LLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQEL 123

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R    
Sbjct: 124 AARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFAVLHALLSRPGKV 183

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+       
Sbjct: 184 WSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPTP 238

Query: 229 TCEYLE 234
             E  +
Sbjct: 239 PAEPTD 244


>gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
 gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I ++EDDK +       LK+  + V   +  +           D ++LD+ L D+ G E
Sbjct: 4   HIYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSKTAEKVPDLVLLDIMLPDMDGLE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ LR    +   P+ +++  ++  DKV+GL  GADDY++KPF   EL++R++A++RRS
Sbjct: 64  IVKKLRSRPDTVRIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRS 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R       +V GD++++ + + V V G    LT KE+++++LL +     L ++  ++ +
Sbjct: 124 RALQDDKQLVIGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E E + +D+ I  LR+KL  A    N I+TV   GY + 
Sbjct: 184 WGTDYEGESRTLDMHIKTLRQKLGEAG---NMIKTVRNVGYKME 224


>gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
 gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA
           [Mycobacterium ulcerans Agy99]
          Length = 236

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 26  LERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +  +I  G L
Sbjct: 86  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGPL 145

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 205

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL    GG   + TV G G+VLR
Sbjct: 206 FIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 234


>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
 gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
          Length = 229

 Score =  248 bits (635), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  LA  +   L+   +  +  + G+  ++  K  + D I+LDL L  + G E
Sbjct: 3   KVLIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLMLPGLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R      P+ +++  +   D++ GL+ GADDY+ KPF+  E+VAR++A +RR   
Sbjct: 63  VCKQVRQFSG-IPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVEL 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T    ++ D      +G  I LT  E+Q+++LL         +++ +  +Y  
Sbjct: 122 DHIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYSD 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + ID  I KLRKK+S  A   N I +V+G GY    N
Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224


>gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+++DD+A+  S+   L    ++V   + G + +        DA++LD+ +  + G 
Sbjct: 1   MDILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVMMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR +    P+ +L+   ++ ++V GL +GADDY+ KPF  EEL+AR+RA++RR  
Sbjct: 61  EVCRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   DLS++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PQLEPGVEALTFQDLSLDPATRDVRRGEREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V+I  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYIGYLRRK-TEAEGENRLIHTVRGVGYVLRETPP 228


>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
 gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
          Length = 228

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 119/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L   ++ +L  E F V   + GE G+        D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV-NDSVDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K  TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+  
Sbjct: 62  TLKKLRE-KWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGN 120

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H QS    +I   DL +    +    QG  + LT  E+ ++         TLTKEM    
Sbjct: 121 HTQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLD 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   R     + ID+ +  LRKKL   + GK  I+T+ GRGY++
Sbjct: 181 VLGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224


>gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGDNSAPTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSAA 232


>gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
 gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM
           15053]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDD +L + +   LK + +   +     +   L    ++D +ILD+ L D  G+E
Sbjct: 3   RIFLVEDDLSLINGLSFALKKQGYETDIARTSLEAQNLWGNEDYDLVILDVSLPDGSGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+  L+      D + GL  G DDYI+KPF    L++RI A++RRS  
Sbjct: 63  LCKIIRRTS-KVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRRSDN 121

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             ++   + +  + V L    V     ++ LT  EY+++ L     +  L+ E  L+ L+
Sbjct: 122 FNETTTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQILSKLW 181

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           D  +   +   + V+I +LR K+ +  G    I TV G GY    NA D
Sbjct: 182 DCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYKW--NAAD 228


>gi|182437916|ref|YP_001825635.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326778552|ref|ZP_08237817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178466432|dbj|BAG20952.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326658885|gb|EGE43731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 237

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 23/238 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+   F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 5   HVLFVEDDDVIREATQLALERVGFTVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 65  LCRRIRDES-TVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 123

Query: 119 -----------SRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                      + G A++    +V GDL V+ D   V   G ++ LT  E +++   S  
Sbjct: 124 AAGPDGLGQGGAEGDAETFGGVLVFGDLEVDTDGMEVRRAGEQVALTPTEMRLLLEFSSA 183

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T L+++  L  ++D     + +++DV + +LR K+         I+TV G GY LR
Sbjct: 184 PGTVLSRDRLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGYKLR 236


>gi|84498095|ref|ZP_00996892.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84381595|gb|EAP97478.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL EDD A++  +   L+ E + V V   G + +E  +    D ++LDLGL  + G E
Sbjct: 3   RVLLAEDDPAISEPLARALRREGYEVEVRADGREALEAAREN-PDLVVLDLGLPTMDGLE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV +L+  +   D V GL +GADDY++KPF   EL+AR RA++RR   
Sbjct: 62  VCRRLRGEGHTVPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARARALLRRGIP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A       D+ V+ +++ V +    I LT KEY+++ +L+  +   +++E  +  +++ 
Sbjct: 122 EAVPTGQV-DIRVDAESRRVFLHDEEIQLTAKEYELLRVLARNQGKVISREQLMREVWET 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 K +D+ I  LRKKL + A    YI T+ G G+      +
Sbjct: 181 AWYGSTKTLDMHISVLRKKLGDDAMQPRYITTIRGVGFRFDPAGE 225


>gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
 gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter
           calcoaceticus RUH2202]
          Length = 224

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL +GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIRQ-RAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|238759460|ref|ZP_04620624.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
 gi|238702357|gb|EEP94910.1| Two-component system response regulator [Yersinia aldovae ATCC
           35236]
          Length = 242

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G+ GI       + A+ILD+ L D+ G 
Sbjct: 16  MKILLVDDDIELGTMLREYLSGEGFNAELVLTGKAGITAALSGNYSALILDIMLPDMSGI 75

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K   P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 76  EVLQQVR-KKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFD 134

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            H        S+I  G L +N   ++ E +G    LT  E+ ++ELL       +TK+  
Sbjct: 135 EHPDVVFSDKSVITQGALILNPSTRSSEWRGKSFDLTASEFNLLELLLRSPERVVTKDEL 194

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+   G    IETV   GY +R
Sbjct: 195 SDKGLGRPREAYDRSVDVHISNIRQKLAALPGNTLNIETVRSIGYRIR 242


>gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44]
 gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44]
          Length = 223

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 117/223 (52%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D++ +   ++L L    +       G + +EL +   FD I+LD+ + ++ G+
Sbjct: 2   IKILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVMMPNMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    +R    + P+ +L+  +   D V+GL  GADDYI+KPF+++ L+ARI A++RR++
Sbjct: 62  DTCYQIRQL-CNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVLRRTK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++ 
Sbjct: 121 KDG--FITFNGIEWDKTKHTVTVYNEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
            + + E + +D  I  +R KL       + Y+ET++  GY  +
Sbjct: 179 YQTDIEYRTVDSHIRNIRDKLRKKDFPVEKYLETIYKVGYKWK 221


>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
 gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
          Length = 223

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 58/221 (26%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+K +   I   L  E F +     GE+ +++ +    D  I+D+ +  + GFE
Sbjct: 4   RVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  L+  K   PV +L+     +DK+RG   G DDY+ KPF+  EL+AR++A+++R   
Sbjct: 64  LVENLKEFK-DIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYSV 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +  ++I   D+  + +   +      IHL  K+++++  L+   +   ++E  +  ++  
Sbjct: 123 NTSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   + +DV I ++R+ L +  G K  + TV G GY + 
Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK--VVTVRGLGYKVE 221


>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+ +DD  +   I   L+ E F V     GE+   L +    D  I+D+ + +  G+
Sbjct: 1   MNILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKDGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+    I DK +G Q+G DDY+ KPF  +ELV RI+A++RR  
Sbjct: 61  ELCREIRR-YYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I   +  ++  +  +  +   + L  KE++++  L+   +   T+E  ++ ++ 
Sbjct: 120 LVSSDTIQLNNTVIDRKSYEIRCKDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +DV I +LR++ S        I TV G GY L 
Sbjct: 180 QDFTGDARTVDVHIKRLRERFSQTDDF--IITTVRGLGYKLE 219


>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V+    G + + +   ++ D ++LDLGL D+ G E
Sbjct: 7   RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   +S PV +LS  S   DKV  L +GADDY++KPF  +E +AR+RA VRR   
Sbjct: 67  VLAGLR-GWLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGAT 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A++    I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 126 AAETDEPVIETSSFTVDLAAKKVTKGGVEVHLTPTEWGMLEMLVRHRGKLVGREELLKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL +      ++ T  G GY  ++
Sbjct: 186 WGPAYAKETHYLRVYLAQLRRKLEDDPSHPVHLLTEAGMGYRFQQ 230


>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
 gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
           orientalis CIP 102891]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 82/229 (35%), Positives = 118/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L   ++ +L  E F V   + GE+G+ L    + D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALL-NDQIDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++ 
Sbjct: 62  TLKRLRETW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRRTQS 120

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      I   D+      +    QG  I LT  E+ ++         TLTKE   
Sbjct: 121 SNNKAAKNSDCIEYQDIQAFPGKQEAYCQGELIDLTTTEFALLAHFIQHPGDTLTKEALS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +   R     + ID+ +  LRKKL   A GK+ I+T+ GRGY+L E 
Sbjct: 181 LDVLGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTIRGRGYLLVEE 229


>gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 220

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+++ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRADGFAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ +++ L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V       + +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ KPF  EEL AR+ A++RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I  G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 244

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 10/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK-FYEFDAIILDLGLTDIPGFE 61
           I +++DD  +   ++  L+   F V   D GE  +   +   E D +ILD+ L    GF 
Sbjct: 7   IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R+LR      PV +L+  S   D++ GL+ GADDY++KPFN  EL+ARI+AI+RR   
Sbjct: 67  VCRSLRTQS-QVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEH 125

Query: 122 HA--------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                              +++  ++ +  +  +  L+G +Y ++ L        LT+E+
Sbjct: 126 TEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTREL 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +       P  + IDV + +LR++L   A     I+T+ G+GY+L  + +
Sbjct: 186 IAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASVE 238


>gi|114776380|ref|ZP_01451425.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
 gi|114553210|gb|EAU55608.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 132/230 (57%), Gaps = 10/230 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  L H +   L  + F V     G DG  + +    D IILDLGL D+PG 
Sbjct: 1   MRLLLIEDDPELCHELASKLAQQGFAVDSAQTGVDGAYMGESEPHDIIILDLGLPDVPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R   I+TPV IL+   +  +KV G ++GADDY++KPF+ EEL+ R++A++RR+ 
Sbjct: 61  DILAQWRRKNIATPVLILTARGAWHEKVEGFRAGADDYLTKPFHFEELLVRLQALIRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQG-----HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           G A + IV G+L ++ ++++            I LTG E++++  + L      +    +
Sbjct: 121 GVAGANIVIGNLQLDEESQSAIWDDAQAGLRHIELTGIEFRLLRYMMLHPKRVFSATHLV 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            H+YD  DE E  +I+V++ +LRKKL      K  I T  G+GY L  +A
Sbjct: 181 EHVYDFNDEKESNVIEVYVSRLRKKL-----AKEVICTRRGQGYYLDPDA 225


>gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104]
 gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra
           [Mycobacterium avium 104]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL    GG   + TV G G+VLR
Sbjct: 203 FIGYLRRKLEAN-GGPRLLHTVRGVGFVLR 231


>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ L+  IEL LK E + +   + G  G+E+ +  E D ++LD+ L +I G E
Sbjct: 3   KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LR      P+ +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR   ++   
Sbjct: 63  VLRRLRRTS-DIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRIV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    + +I  G LS++     V      I LT +E+ ++++L   KN  LT+ + +  +
Sbjct: 122 TVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  E  +IDV+I  LR K+ +A   K  I TV G GYV+++ 
Sbjct: 182 CGYDYLGETNVIDVYIRFLRTKIDDAFKVK-IITTVRGVGYVIKDE 226


>gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           intracellulare ATCC 13950]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D +ILDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E   + V++ +LR+KL +      ++ T  G GY   
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGYRFE 225


>gi|241763069|ref|ZP_04761130.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241367852|gb|EER62084.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 251

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 11/231 (4%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR +L++ED+  +   +   L++E + V+      +G+      + D ++LDLGL D  G
Sbjct: 20  MRTVLVVEDEPQIRRFVRSALEAEGWQVHEAATMREGLSAAGTRQPDLLVLDLGLPDGDG 79

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++  +R    + P+ +LS  +   DKVR L +GADDY++KPF   EL+AR+RA +RR 
Sbjct: 80  VDLICDVRGWS-AVPIIVLSARTDEADKVRALDAGADDYLTKPFGTGELMARVRANLRRP 138

Query: 120 RGHAQSLIV---------TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           R    + I           GD+ ++  A+ V   G  +HLT  EY+M+ +L       +T
Sbjct: 139 RAARGNGITVEGGDPVFLFGDVEIDRSARLVRRGGVEVHLTPTEYRMLSVLVANSGRVIT 198

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L  ++      +   + +++  LR+KL        ++ T  G GY L
Sbjct: 199 QKQLLREVWGPMRSEQSHYLRIYMGHLRQKLEADPAQPRHLLTESGVGYRL 249


>gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 221

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGYQI 218


>gi|16331910|ref|NP_442638.1| OmpR subfamily [Synechocystis sp. PCC 6803]
 gi|1001828|dbj|BAA10709.1| OmpR subfamily [Synechocystis sp. PCC 6803]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIP 58
           MR+LL+ED+  L  ++E  L+ EN+ V     G             +   I D  +  + 
Sbjct: 1   MRLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G E+ + LR  + S P+ +L+    I D+V GL +GADDY+ KPF   EL+AR+R++ RR
Sbjct: 61  GLELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRSLQRR 120

Query: 119 SRGHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S       +  G   ++      V  +  RI LT KE+Q++E         L+ E   N 
Sbjct: 121 SPELQPQQLQVGQWWLDYGTFAVVTPEQARITLTAKEFQLLEYFMKHPQQILSSEQIKNQ 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+    E    ++   +  LR+KL   + G N IETV+G GY  + + 
Sbjct: 181 LWALSAESTSNVVAAQVRLLRRKLEEYSHG-NLIETVYGLGYRFQPHP 227


>gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD  L   ++ +L+ E F+V   + G+ G+E       D I+LD+ +  + G E
Sbjct: 3   KILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDS-SIDLILLDVMMPVMNGTE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR +  +TPV +L+      D++ GL+ GADDY+ KPF+  EL+AR+RA++RR++G
Sbjct: 62  MLRRLRESH-TTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRRTQG 120

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +          +   D+ +    + V      I +TG E  ++          + KE   
Sbjct: 121 NNDKAANKADKLTYQDIVIYPGRQEVFCHDQAIEMTGTELALLSYFVQHPGQIVAKETLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +   R     + ID+ +  +RKKL     GK  I+T+ G+GY+L E A
Sbjct: 181 LEVLGKRLAQFDRAIDMHVSNIRKKLPERLDGKPRIKTLRGKGYLLVEEA 230


>gi|300024305|ref|YP_003756916.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526126|gb|ADJ24595.1| two component transcriptional regulator, winged helix family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 221

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 123/225 (54%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  +AHSI   L + +F V     GE          +D I+LDLGL  I G 
Sbjct: 1   MRILVVEDEPKIAHSIVTALSAAHFQVDAARDGETAWFRGDTENYDLIVLDLGLPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   +  ++V G+ +GADDY++KPF  EEL+AR+R+++RRS 
Sbjct: 61  SVLKKWRATGRMMPVLILTARGAWPERVEGIDAGADDYLAKPFQLEELMARVRSLIRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  +++  G L+++     V + G  + ++  EY++I  L   K   +     + HLY 
Sbjct: 121 GHGSAILTAGPLALDTRQMRVVLDGAPVPVSPLEYRLIGYLMHHKGRVVPPTELIEHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             D  +   ++  + +LR+KL     G+  IET  G GY++ E +
Sbjct: 181 DDDARDANALEAVVTRLRRKL-----GQETIETRRGFGYMVSEPS 220


>gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3]
 gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3]
          Length = 216

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE++++  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 215


>gi|296104894|ref|YP_003615040.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295059353|gb|ADF64091.1| DNA-binding transcriptional regulator BasR [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 220

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  L   + L L +E + +       +   L +  E+  +ILDLGL D  G 
Sbjct: 1   MKLLIVEDDLLLQEGLALALSNEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L   R   +  PV IL+   +IED++ GL SGADDY+ KPF   EL AR+RA++RR +
Sbjct: 61  TLLSQWRRRGVDNPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+ +L+  GD+++NL  + V  Q   + +T KE+ ++  L +R   T+ +E     +Y 
Sbjct: 121 GHSDNLLTDGDITLNLQTQQVLCQSLPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+P    ++V I  LR+KL     GK+ I+TV G GY L 
Sbjct: 181 WQDDPGSNTLEVHIHNLRRKL-----GKDRIKTVRGVGYRLE 217


>gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
 gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
          Length = 224

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 122/220 (55%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDDK+L   +E+ LK   + VY+ + GE  IE+ +    D +I D+ +  + G+
Sbjct: 2   INILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIMMPKVSGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ LR +    P+ +++   +IEDK +G   GADDY+ KP + +E++ RI A++RRSR
Sbjct: 62  ELVKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRRSR 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  ++ GD  +N D  T+      I L  KE+ ++  L        T+   +  ++ 
Sbjct: 122 ISNEHKLIIGDAVLNYDTLTITKGEQIIELAKKEFYLLFKLLSYPKQIFTRNQLMEEIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              E + + +DV I ++R+KLS+    +  I TV G GY 
Sbjct: 182 VDIESDERTVDVHIKRIREKLSD--FNEFKIVTVRGLGYK 219


>gi|254488127|ref|ZP_05101332.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
 gi|214044996|gb|EEB85634.1| transcriptional regulator CtrA [Roseobacter sp. GAI101]
          Length = 239

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 151/226 (66%), Positives = 180/226 (79%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + SIE+ML   N N Y TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSIEMMLTHANLNTYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+++I TP+ ILSG    E K++G   GADDY++KPF++EELVARI AI+RR +
Sbjct: 61  EVLRQLRLSRIETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRRYK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIQTGQVSVNLDAKTVTVDDKTVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           G DEPE+KIIDVFICKLRKKLS A GG+NYIETVWGRGYVLR+   
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSTATGGENYIETVWGRGYVLRDPEP 226


>gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG]
 gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 131/225 (58%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 6   KVLVADDDKKIAQFIKNKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 66  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 125

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 126 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E
Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTE-GGLSDPIKTIRGFGYVIQE 229


>gi|126463687|ref|YP_001044801.1| two component transcriptional regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126105351|gb|ABN78029.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 228

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVRGWS-QVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E + + + V+I +LR KL + A    +I T  G GY  R+
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRD 227


>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 234

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I   L+           G + +   +    D IILD+G+ ++ G E
Sbjct: 4   RILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIGMPEMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+  LS      D++ GL+ G DDY++KPF+  ELVAR++AI++RS  
Sbjct: 64  VCRQIRKTSG-LPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKRSSN 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+       +V G+LS++   +TV    + I +T  E+ +++ L  R +   ++E  + 
Sbjct: 123 GAEPDRRHATLVAGELSLDRRGRTVMFGENTIAMTALEFAILDALLSRPDMVFSREQLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R K    AGG+  I TV G G+ L
Sbjct: 183 AAYGAGTYVADRTIDSHIRNIRAKF-LVAGGQGIIATVRGIGFKL 226


>gi|66046945|ref|YP_236786.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|63257652|gb|AAY38748.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae B728a]
 gi|330974387|gb|EGH74453.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 247

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L++    V +   G          + D +ILDL L    GF 
Sbjct: 9   HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R++R  +   P+ +L+  +   D + GL +GADD++ KP +   L+ARI+A++RRS  
Sbjct: 69  ICRSVR-DRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 127

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 128 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 188 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 239


>gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 227

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 126/225 (56%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILLIED+  ++  +   L+   ++V + + G D   L    E+  I+LD+ L DI G 
Sbjct: 1   MEILLIEDNHRISEFVVKGLEETGYSVVLAENGVDARSLISEKEWSLILLDIMLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           E+L+  R  KI+TP+ ++S +   EDK+R L  GADDY++KPF   EL+A I A+ RR+ 
Sbjct: 61  ELLQYTRYKKINTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAG 120

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A  ++   DL +  D   VE  G  I LT +E+++++LL   K+  L++   L+ 
Sbjct: 121 LKYDVASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDT 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +    ++DV+I  LR K+    G    I+TV GRGY++ 
Sbjct: 181 VWGVNYDTNTNVVDVYISYLRNKIDTD-GHVKLIKTVKGRGYMIE 224


>gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 248

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LK   F V     G DG+      E+D I LD  L  + G  
Sbjct: 26  RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALTDEYDVITLDRMLPGVDGLT 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRSR 
Sbjct: 86  IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSRS 145

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +++ +  G L+++L  +     G  I L   EY+++E +      T+T+ M    +
Sbjct: 146 APAQSETSLTVGPLALDLIGRKASRDGVEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 206 WGYHFDPGTNLIDVHMGRLRKKI-DPPELAPMIRTVRGAGYIL 247


>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 118/227 (51%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL +DD  L+  ++     E + V     G + ++       D +ILD+ + ++ GF+
Sbjct: 3   KLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPELDGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ +R  K S PV +L+      D++ GL+ GADDY+SKPFN  EL+ARI+AI+RR+  
Sbjct: 63  TLKHIRA-KSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRATQ 121

Query: 122 HAQSLIVTG----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +T      + +    +TV V G  + LT  EY ++E L +     LTK+     
Sbjct: 122 EKDDDPMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     + +D+ I  LRKK+ N   G+  I+TV G GY+  ++
Sbjct: 182 ALGRKLTMYDRSLDMHISNLRKKIGNLESGEPRIKTVRGVGYIFVDS 228


>gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 105/223 (47%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +   L++    V     G       +    D I+LDL L    G ++
Sbjct: 9   ILIVEDEERLARLVADYLRAAGHRVQHLAEGTGVAAWVRRERPDLILLDLMLPGKDGLDI 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ + +      D++ GL+ GADDY+ KP++  ELVAR++A++RR+   
Sbjct: 69  CREIRTES-QVPIIMTTARVEEIDRLLGLELGADDYVCKPYSPRELVARVKAVLRRTLAP 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                  G L ++ D   V      I LT  E+ ++E L        +++  ++ +Y   
Sbjct: 128 EPPAADPGPLHLHRDELRVRAGDDEIELTAVEFALLETLHGAPGRIFSRDRLMDRIYRDH 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                + ID  + KLR+KL+     +  I +V+G GY     A
Sbjct: 188 RVVSDRTIDSHVKKLRRKLAELVPDQELIHSVYGVGYRYETPA 230


>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
 gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
 gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +       V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 220


>gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 123/221 (55%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L  +I   L+ + + V     G+   EL     +D ++LDL L  + G 
Sbjct: 1   MRILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLPGMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR       + ILS  SS+ DKV GL  GA+DY++KPF  EEL ARIR+++RRS 
Sbjct: 61  DILSDLRKTNKDMKILILSARSSVSDKVLGLDIGANDYLAKPFAFEELEARIRSLLRRSF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++V  ++S++   +TV V G  + +T KE  ++E   L ++  +++E  + H+++
Sbjct: 121 VQENSVLVWNEISLDTVGRTVSVSGIDVTMTKKELALLEYFLLNQSKVISQEELMEHVWN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     + V I  LRKKL  A G  + I T  G GY L
Sbjct: 181 MEADSFSNAVRVHIASLRKKLKIALGY-DPIATKIGEGYFL 220


>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
          Length = 225

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 119/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIED+  L  S+   L+   + +     GE  +EL     +D ++LDL L  + G 
Sbjct: 1   MRLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR   + TPV ILS  S I DKV GL +GA+DY++KPF+  EL AR+R++ RR  
Sbjct: 61  TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G L+ +  ++     G  I LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              +     I V I  LRKKL  A G  + I    G GY L EN  
Sbjct: 181 SSVDAFSNSIRVHISALRKKLRTALGY-DPIRNRIGEGYELEENEP 225


>gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +   ++  L+   +++ V+  G DG+   +   ++ ++LDL L    G E
Sbjct: 4   KILIIEDDLEICSLLKEFLEESGYDIKVSHTGIDGMRELRTLNYNLVLLDLMLPFKSGDE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR      PV ILS    +  KV  L+ GADDY++KPF+  E++ARI + +RR + 
Sbjct: 64  ILRELRSFS-DIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   + ++   D+++N + K V V G+ + LT KEY ++ LL        +K    
Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      E   ++V I  +R KL +A   + YIET+WG GY L E
Sbjct: 183 ESIWKEEYFSEDNTLNVHISNIRNKLKSANPNEEYIETIWGMGYKLHE 230


>gi|254251504|ref|ZP_04944822.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
 gi|124894113|gb|EAY67993.1| two component transcriptional regulator [Burkholderia dolosa
           AUO158]
          Length = 269

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 27  MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 87  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 147 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 206

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+         I TV G GY L +
Sbjct: 207 WGEEVSNNAIEVYVHRLRKKIEPIG---VRISTVRGLGYCLEK 246


>gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 222

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ LA  +   L   ++  +    G   +   +  + + I+LDL L    G E+
Sbjct: 5   ILIVEDEEKLAKLLADYLHQADYETHCLSDGSRVVPWIQAQKPEMILLDLMLPGKGGLEI 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    S P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR+ G 
Sbjct: 65  CKEIRSFS-SVPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRAHGA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
               +   +L ++       +    +HLT  E++++ LL+        ++  ++H+Y  +
Sbjct: 124 EA--VNGKELVLDDSRYRAMLHDRDLHLTAVEFKLLSLLAASPGRIFGRQQLMDHIYPDQ 181

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + ID  I KLR+KLS A  G+ YI +++G GY    
Sbjct: 182 RIVSDRTIDSHIKKLRRKLSGADPGQEYIHSLYGAGYKFEP 222


>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
 gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
           [Tolumonas auensis DSM 9187]
          Length = 229

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL++DD  L       L +E F V +   GE G+E     ++D I+LD+ +  + G 
Sbjct: 2   IRILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMPKLNGI 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV +L+      D++ GL+ GADDY+SKP    ELVAR+RAI+RR+ 
Sbjct: 62  DVLRRLR-NHSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRRAD 120

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              Q       +  G L+++  ++    +   + LT  E+ ++E+L  R    ++KE   
Sbjct: 121 PDKQEPGQLQPLRVGALTISAASRNATWRDELLDLTSTEFNLLEILCRRAGRIISKEDLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            H          + IDV +  LR+KL     G++ I+TV G GY L 
Sbjct: 181 LHTLGRPLARYDRSIDVHVSNLRQKLGVLKDGRSPIQTVRGIGYQLV 227


>gi|170703189|ref|ZP_02893997.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|172062527|ref|YP_001810178.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|170131903|gb|EDT00423.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|171995044|gb|ACB65962.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 221

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLTRLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGYQI 218


>gi|186476807|ref|YP_001858277.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193266|gb|ACC71231.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 232

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED++ +   +   L+ E   VY    G+ G+      + D +I+DLGL D  G +V
Sbjct: 8   VVLIEDEQQIRRFVRASLEGEGMTVYDAPTGKQGLIEAATRKPDLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      P+ +LS  +   +KV  L +GADDY++KPF   EL ARIRA +RR    
Sbjct: 68  IRELRGWS-ELPIIVLSARTQESEKVAALDAGADDYLTKPFGVSELFARIRAHLRRRNQG 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  G ++V+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GPAETPQVQFGGVTVDLALRQVSRDGEPVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPSHVESHHYLRIYMAHLRQKLERDPAQPEHIVTETGVGYRLV 229


>gi|148257443|ref|YP_001242028.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. BTAi1]
 gi|146409616|gb|ABQ38122.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. BTAi1]
          Length = 255

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL +EDD+ +A  +  +L+   F            ++ +  + D I+LDL L D  G  
Sbjct: 20  RILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMS 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +++      D++ GL+ GADDY+ KPFN  ELVARIRA++RRS+ 
Sbjct: 80  ICRRLRQVS-TVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQL 138

Query: 122 HA------QSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H       Q+ +      +    +T+      +I LT  E+ ++          L++E  
Sbjct: 139 HPAVIAARQAPMTFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   + G+  P  + IDV I ++R+K+   A   + I+TV   GYV     +
Sbjct: 199 IELAHGGQAGPVERSIDVHISRIRQKIEPGAKSWSLIKTVRLGGYVFTPRVE 250


>gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104]
 gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium subsp. avium ATCC 25291]
 gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium
           avium 104]
          Length = 226

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D +ILDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q ++ T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E   + V++ +LR+KL N      ++ T  G GY   
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGYRFE 225


>gi|300853321|ref|YP_003778305.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433436|gb|ADK13203.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
          Length = 230

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDDK+L   I   L  E + V+ +   E+   +      D +ILD+GL D  G
Sbjct: 1   MKSILLVEDDKSLNRGISFKLSKEGYKVFSSRTIEEAKIILAENSVDLMILDVGLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F++   +R  K    +  L+      D V GL  GADDYI+KPF+   L+++I A++RR+
Sbjct: 61  FDLCGEVR-KKNDLLIIFLTACDQEIDIVTGLDMGADDYIAKPFSLMVLMSKINALLRRN 119

Query: 120 RGHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               QS  IV+GD+  ++    V      + L+  E ++++ L       +TK+  LN L
Sbjct: 120 SNKNQSKKIVSGDIVFSITDMKVLKNEEELFLSKTEIKLLKYLMDNAGQIITKDQLLNKL 179

Query: 179 YDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D  +   +   I V I +LR+K+ +      YI+ V G GY+  E
Sbjct: 180 WDIDNTFVDDNTIAVNIRRLREKIEDNPSKPKYIKNVRGMGYIWIE 225


>gi|33594128|ref|NP_881772.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|33598090|ref|NP_885733.1| transcriptional regulatory protein OmpR [Bordetella parapertussis
           12822]
 gi|33602983|ref|NP_890543.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
           RB50]
 gi|33564202|emb|CAE43488.1| two component response regulator [Bordetella pertussis Tohama I]
 gi|33566648|emb|CAE38858.1| transcriptional regulatory protein OmpR [Bordetella parapertussis]
 gi|33568614|emb|CAE34372.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
           RB50]
 gi|332383543|gb|AEE68390.1| two component response regulator [Bordetella pertussis CS]
          Length = 233

 Score =  248 bits (634), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 7   KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGAD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 67  ACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     + +  G    +   + +      + LTG E  ++E L       L++E  L  
Sbjct: 127 PSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLAL 186

Query: 178 LYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             D    E   + ID+ I +LR+ +        +I+TVWG GY    
Sbjct: 187 ARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP 233


>gi|311029188|ref|ZP_07707278.1| two component transcriptional regulator, winged helix family
           protein [Bacillus sp. m3-13]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           MR+L++EDD+ +A  +E  L+ E +   +             K  E D  + DL L D  
Sbjct: 1   MRVLIVEDDRTIAVGLEYSLRQEGYETILCPDVRSAESAIGEKLNEIDLCLFDLSLPDGS 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+++   ++  +   PV  L+      + V GL  GADDYI+KPF   EL++RI++++RR
Sbjct: 61  GYDLCEQVK-KREDKPVIFLTAFDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRR 119

Query: 119 SRGHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                +   S I   ++ +N     V   G  + LT  EY+++ + +      LT+   L
Sbjct: 120 YHKQPEQVKSYIDIENIRINTLEGKVFKNGEEVLLTALEYRLLMIFANHIGQVLTRAQLL 179

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           + ++D   D      + V+I +LR+KL +       I TV G GY 
Sbjct: 180 DRIWDVAGDFVNDNTLTVYIKRLREKLEDNPQSPVIIRTVRGMGYK 225


>gi|190575791|ref|YP_001973636.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190013713|emb|CAQ47348.1| putative two-component response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLNGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I++++ +LRKKL   AG    I TV G GY+L  +
Sbjct: 181 FDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLLEAS 221


>gi|167917734|ref|ZP_02504825.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
          Length = 239

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPG 59
           M+ILL+ED++ +A  ++  L      V   D G DG+ L     +DAI+LD  L   I G
Sbjct: 1   MKILLVEDNQQVAGFLKKGLLETGHVVDWADNGRDGMALAIGESYDAIVLDRMLPGGIDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            +++ ALR A    PV ILS +  +++++RGL++G DDY+ KPF+  E+VAR+ A+ RRS
Sbjct: 61  LKIVAALRAAGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRS 120

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + +   + +  GDL ++L ++ V   G+ I L  +E++++E L       +T+ M L ++
Sbjct: 121 QDNGFDTKLKVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++   +P+  +IDV + KLR+K+ +    ++ + T+   GY+L
Sbjct: 181 WEYHFDPQTNVIDVHVSKLRQKI-DTGFDRSLLRTIRNAGYML 222


>gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
 gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides
           DG6]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L   I + L+ E + V     G   +EL +    D +ILD+ + ++ G E 
Sbjct: 6   ILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVMMPEMDGVEA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR   +  PV +L+     ED ++GL  GADDY+ KPFN  EL ARIRA++RR    
Sbjct: 66  CTKLREFSL-LPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRRVPPV 124

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +      G + ++   + V V+G  + LT  EYQ++ +L+ +    +  +  L  ++  
Sbjct: 125 YRPLHAGEGQIQIDQQKREVLVRGEVVDLTPTEYQLLLILTEQAGKVVAHDTLLRAVWGQ 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +   + V+I  LR+K+       + + T WG GY L
Sbjct: 185 EYSRDNDYLKVYIWHLRRKIEQDPRNPSLLLTDWGVGYRL 224


>gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 219

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   IE  L+   F V     G           +  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTVYALVVLDLGLPRVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR +    PV +L+  S++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  ELLKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DL+VN  A+TVEV   R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL     G   I+TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVMEKE 219


>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
 gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
 gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
          Length = 230

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++D+  +   + L L    +N      G++ I   +   F  ++LD+ +  + G+
Sbjct: 2   MDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E    +R    + P+ +++      D ++GL+ G+DDYI+KPF++ EL+ARI A++RRS 
Sbjct: 62  ETCNRIRSFS-NVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H Q  +    +  +     + V    + LT  E+ ++ L     N  L+++  +  ++ 
Sbjct: 121 QHEQ--LRYKGILWDEAKHFITVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVL 221
                E + +D  I  LR KL  N      +++TV+G GY  
Sbjct: 179 LDTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYRW 220


>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
 gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
           [Chlorobaculum parvum NCIB 8327]
          Length = 236

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 120/224 (53%), Gaps = 8/224 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA  ++  L+   ++      GE+ +E  + +  + ++LD+ L  I GFEV
Sbjct: 6   ILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIMLPGIDGFEV 65

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---R 117
            R +R        P+ +L+      DKV G + G DDY+ KPF+  EL  RIRAI+   R
Sbjct: 66  CRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKRDR 125

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+R + Q ++    + +++     ++ G  + LT  E++++ LL  R+    T+E+ L+ 
Sbjct: 126 RNRSNVQEVLRADGIEIDIGKHIAKLDGQPLALTLMEFKLLALLLKRRGQAQTREVLLSD 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++D       + ID  + +LR+KL +A      I+TV G GY  
Sbjct: 186 VWDVDKSINTRTIDTHVTRLREKLGDAG---KLIKTVRGLGYKF 226


>gi|229917896|ref|YP_002886542.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
 gi|229469325|gb|ACQ71097.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sp. AT1b]
          Length = 230

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 11/231 (4%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           MR    I + +DD+A+   + + LK+E + +     G++ ++L      D +ILDL +  
Sbjct: 1   MRSQPVICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLMMPV 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G E    +R  +   P+ +L+  +S  D ++G+  GADDYI KPFN  E+  R+++++
Sbjct: 61  MGGIEACIEIRKTQF-MPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLL 119

Query: 117 RRSRGHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
           RR R +        S +V  +++++L  +        I LT KE+ ++       N  LT
Sbjct: 120 RRYRDYGSDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLT 179

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            E     ++          + V I K+R+KL +       I+TVWG GY L
Sbjct: 180 VEQIYEAVWGEAAFEVDNTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230


>gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
 gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 10/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +   +   LK+E + V+  + G++G++  K  + D IILD+ +  + G E
Sbjct: 7   KILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIE 66

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
               +R       T +  L+        + G  +GADDYI+KP     LV+++++++RR+
Sbjct: 67  ACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRRN 126

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +G   +++  GDL ++ D   +  +   I L  KE++++ LL+ +      +E  L+
Sbjct: 127 VLPKGDEGNVVKIGDLIIDKDQYKIVFKKEEIILPRKEFELLSLLTSKPGKVFKREEILD 186

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++        + IDV I KLR+KL + +      +TV G GY 
Sbjct: 187 VVWGNEVIVGGRTIDVHIRKLREKLGDDSF-----KTVKGVGYK 225


>gi|330966561|gb|EGH66821.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 247

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L++   +V +   G          + D +ILDL L    GF 
Sbjct: 9   HVLIVEDDQRLAELTSDYLQNNGLSVSIEGNGALAASRIIDEQPDLVILDLMLPGEDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 69  ICRTVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 127

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 128 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 188 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 239


>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli CNPAF512]
          Length = 234

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I   ++           G + +   +    D IILD+G+ D+ G E
Sbjct: 4   RILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R      P+  LS      D++ GL+ G DDY++KPF+  EL+AR++AI++RS  
Sbjct: 64  VCRQIRKTSG-LPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G   + +V G++S++   +TV      + +T  E+ ++E L  R     ++E  + 
Sbjct: 123 GAAPGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R K   A GG   I TV G G+ L
Sbjct: 183 SAYGAGTYVADRTIDSHIRNIRAKF-TAVGGTGIIATVHGIGFKL 226


>gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri
           93-146]
 gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 243

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  L   +   L +  +  +    G++ +   + +  + I+LDL L  + G  
Sbjct: 17  RVLIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCNLILLDLMLPGVDGLT 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +++      D++ GL+ GADDYI KP++  E+VAR++ I+RR   
Sbjct: 77  LCREIRRTS-EVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCML 135

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +L     L ++        +   + LT  E+++++ L+ +     ++E  LNHLYD 
Sbjct: 136 Q-DTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQLLNHLYDD 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 + +D  I  LR+KL    G +  I +V+G GY   
Sbjct: 195 YRVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235


>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
           10507]
          Length = 233

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 117/225 (52%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++   I   LK+  +       G+  I     +  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIRAWS-NMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLAMM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S+   G L ++  A  V +  + +HLT  EY+++ LLS      LT      
Sbjct: 125 QNRSQVEESVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E ++  + VF+  LRKK+ +A     YI+T  G GY +
Sbjct: 185 AIWGSSWENDIASLRVFMATLRKKIESAPDSPQYIQTHIGVGYRM 229


>gi|309812003|ref|ZP_07705769.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308434061|gb|EFP57927.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 242

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ L  S+      + + V     G   + L +    D ++LD+GL D  GF+
Sbjct: 17  RVLIVDDEEGLLASLSAAFTFQGWQVLTATTGSQAVALARRESPDVVVLDIGLPDTDGFD 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R       V  L+   ++ED+V G++ GADDY++KPF+ EE++ R  A++RRS  
Sbjct: 77  VLARIRSILPEAGVIFLTARDALEDRVSGIRQGADDYLTKPFSLEEVIVRAEALMRRSGM 136

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            AQ     +V  DL +N     V   G  I LT  E+ +   L+       +K+  L  +
Sbjct: 137 VAQGQGEHLVVDDLVINTLTYEVSRAGEPIRLTATEFALARHLAQNARRVCSKQELLAAV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +    +    +++++I  LRKK+         I TV G GY +R  A
Sbjct: 197 WGEDFQGGEHVVELYISYLRKKI--DGSHPALIHTVRGLGYTMRPAA 241


>gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  LA  +   L+   +       G +   +    +FD +ILDLGL  + G 
Sbjct: 1   MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+   SIE +V+GL  GADD+++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+     G   I TV G GY L +
Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEK 220


>gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
 gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family
           protein [Lyngbya sp. PCC 8106]
          Length = 262

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V   + G  G  L      D IILDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQALALQLLPDLIILDLMLPKVDGFT 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     P+ +L+ +   ++KV G  SGADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T+     
Sbjct: 123 DRIPQAAKHSEILNYGVLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVAPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR K+        YI+TV+G GY L 
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLE 230


>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
 gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Dechloromonas aromatica RCB]
          Length = 223

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +A  +   L+   + V     G +         +D +ILDLGL  + G 
Sbjct: 1   MRILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+ +    D+V+GL  GADDY+ KPF   EL AR+RA+ RRS 
Sbjct: 61  EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + + I  G L+ +   +  ++QG  + L+ +E  ++E+L  R    ++K+  ++HL  
Sbjct: 121 GTSPT-IQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +E     I+V++ +LRKK+    GG   I TV G GY L     +
Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIE--PGGVK-IATVRGLGYCLERPPGE 223


>gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum
           SCRI1043]
          Length = 232

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIVD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGDNSAPTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSAA 232


>gi|83719874|ref|YP_441579.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
 gi|83653699|gb|ABC37762.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 234

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 10  VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 70  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 128

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L +++
Sbjct: 129 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 189 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 231


>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 234

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 104/226 (46%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I + LK    +V     G++ +        D I+LD+G+ +  G +
Sbjct: 4   RILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEFDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+  LS      D+V GL+ G DDY++KPF+  ELVAR+  I+RR   
Sbjct: 64  VCREIR-KGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLSP 122

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S +  G L ++ +       G  + LT  E+ ++     R  +   +E  +
Sbjct: 123 RNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQLM 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              Y    +   + ID  I  +R KL  A    N IET+ G G+ L
Sbjct: 183 RAAYQLNIQVSDRTIDSHIRNIRAKL-AALSCDNVIETIHGVGFKL 227


>gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator
           [Plautia stali symbiont]
          Length = 224

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + L L+SE   +   +  + G+      + D +ILDLGL D  G   
Sbjct: 4   ILIVEDEKEIRRFVRLALESEGLKIVEAEQLQRGLIEAATRKPDLVILDLGLPDGDGNAF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-RG 121
           +R +R    S PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  R 
Sbjct: 64  IREVRQWS-SMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVALRRHQRS 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + L+  G++SV+L A+ V   G  +HLT  E++++ LL       LT+   LN ++  
Sbjct: 123 QPEPLVQFGEVSVDLAARHVLRSGEEVHLTPTEFRLLSLLLNNAGKMLTQRQLLNQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +++  LR+KL        ++ T  G GY  
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPTHLLTETGIGYRF 222


>gi|324998685|ref|ZP_08119797.1| putative OmpR family two-component response regulator
           [Pseudonocardia sp. P1]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+K LA  +   L +E   + +   G  G++       D I+LD+ L  + G+
Sbjct: 1   MRLLLVEDEKPLAELVRRGLAAEGHEIELAHDGNTGLQYALSGRHDVIVLDIMLPGLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR   + TPV +L+      D+      GADDY++KPF+   L+AR+RA++RR+ 
Sbjct: 61  RILQHLRDRGVWTPVLMLTAKDGEYDEADAFDLGADDYLTKPFSFVVLLARLRALLRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +++  GDLS++     V      I LT +E+ ++E L       +TK   L  ++D
Sbjct: 121 ESAPTVLRVGDLSLDPATHRVHRGDVEISLTPREFGVLEHLMAHPGQVVTKTDILRSVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + EV +++V++  LR+K+ +A  G + IET+ G GY + E A
Sbjct: 181 AHYDGEVNVVEVYVGYLRRKI-DAPFGTHSIETLRGVGYRMSEPA 224


>gi|210631746|ref|ZP_03296988.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
 gi|210159866|gb|EEA90837.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279]
          Length = 241

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 9/229 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLT 55
           MR+L+++D+  +A  +    + E ++V   + G   +E           FD I+LD+ +T
Sbjct: 11  MRMLVVDDEVEIADMLAEYFRMEGYDVATANDGAAALEAVSASRGGRGAFDIILLDVNMT 70

Query: 56  DIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115
           ++ GFEV R +R   +S P+  L+      D++ G  +GADDY+ KPF+ E L  R+ A 
Sbjct: 71  NMDGFEVCRRIRE-HLSCPIIFLTARVEDVDQIDGFAAGADDYVLKPFSLEVLGRRVAAH 129

Query: 116 V---RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +    R+R   Q++     L+++  ++TVEV G  + LT  E+ ++ LLS R      +E
Sbjct: 130 MAREGRARRQEQAVRFFRGLTIDYGSRTVEVAGSPVDLTKLEFDLVALLSKRPGQVFDRE 189

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                ++      +   +   + ++R KL+ A   ++ IETVWG GY  
Sbjct: 190 AIYERVWGWDAAGDPSQVREHVRRIRNKLAAAGLDEDPIETVWGVGYRW 238


>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
 gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
 gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
 gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 229

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +    D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKIT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++  L   +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    YI TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGNV 229


>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 243

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/237 (32%), Positives = 116/237 (48%), Gaps = 4/237 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+ED+  LA  I   L+ EN+ V   + GED +E  ++  FD IILD+ L  I GF 
Sbjct: 7   HILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLPGIDGFA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      PV +L+  S   D++ GL  GADDY++KPFN  E + R+  ++RRS  
Sbjct: 67  VCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSAW 126

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +     GD  V L +   +     I LT  E +M+ L   ++   + ++  L  
Sbjct: 127 YRPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLES 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLE 234
           ++    + E + +D FI +LRK          Y +TV G GY     A+ +  E  E
Sbjct: 187 VWGYSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRFSREARGQRNEDKE 243


>gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
          Length = 223

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK + +++   L+ E F+V       + I      ++D +++D+ L D  GF 
Sbjct: 3   KILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLKDGNGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A R      PV  LS      + V GL+ GADDYI KPF   EL++RIR  +RR+ G
Sbjct: 63  VCSAARENN-DIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRN-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A ++I   ++ V+     V   G  I L+  EY++  +    K   L++   L  +++ 
Sbjct: 121 KAGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLFLVFLNNKGAVLSRSRLLEEIWNI 180

Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +      + V+I +LR+K+ +      +I+TV G GY 
Sbjct: 181 AGEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220


>gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 232

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQILD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGDNSAPTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSAA 232


>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
           setae KM-6054]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 112/223 (50%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+   +EL L  +   V     GEDG+ L K    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                  G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 NSDSSAYGGLVIDRSAMTVTKDGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +++D  + +LR K+ +       I TV G GY L    
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSAPTLIRTVRGVGYRLDPPV 228


>gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator
           [Burkholderia sp. CCGE1001]
 gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1001]
          Length = 219

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   IE  L+   F V     G           +  ++LDLGL  + G 
Sbjct: 1   MRVLLVEDDDLIGCGIEAGLRQAGFTVDWARDGHKAGLALDTTSYALVVLDLGLPRVSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR A    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 61  ELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  +I   +LSVN  A+ VEV G R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 121 GRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL     G + I TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKL-----GAHLIRTVRNIGYVVEKE 219


>gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile 630]
 gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-66c26]
 gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile CIP 107932]
 gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-63q42]
 gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-76w55]
 gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-97b34]
 gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-37x79]
 gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-32g58]
 gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile]
          Length = 230

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL    E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEMDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKQEPDLIILDIMMPKMNGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  P+  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +  G L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++    E +   +   + K+R K S     K YI TVWG GY   +
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V+  G  + L     +++ +L  +    + ++     ++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D P+   +   + +LR+ + +       + TV G GY L E  
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFSVALLHTVHGVGYRLAEEP 224


>gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V  TD G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWTDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++ A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AIVTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+         I+TV G GY+L
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKIDPPGANP-MIQTVRGSGYML 223


>gi|332885319|gb|EGK05570.1| hypothetical protein HMPREF9456_02771 [Dysgonomonas mossii DSM
           22836]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/220 (30%), Positives = 115/220 (52%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   +E+ L +  +       G++G+ +   ++   IILDLGL D+ G +V
Sbjct: 6   ILIIDDETQIRRLLEITLSASGYKTIEATTGKEGLLMVASHQPSLIILDLGLPDMDGIDV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
           L++LR      P+ ILS  +S ED V  L  GA+DY+SKPF   EL+ARIRA +R+ +  
Sbjct: 66  LKSLREWFYK-PIIILSVRNSEEDIVHALDKGANDYLSKPFRTGELLARIRASLRQGQTA 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +   +   GDLSV++     +     + LT  E+ ++ L    +   LT +  L  ++  
Sbjct: 125 NESPVFQIGDLSVDIANHIAKKNDELLDLTPTEFSLLSLFVKNQGCVLTHQYILKEVWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               + + + VF+ +LRKK+ +       + T  G GY  
Sbjct: 185 GYVEQTQYLRVFVAQLRKKIEDNPTKPTLLVTESGIGYRF 224


>gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy]
 gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family
           [Spirochaeta sp. Buddy]
          Length = 224

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +       L S  + V   + G+  +++      D IILD+ +  + G   
Sbjct: 4   ILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTVDLIILDIMMPVMDGLSF 63

Query: 63  LRALR-VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++ LR     +TP+ ++S      D +  L+ GADDY++KPF+   L ++IRA++RR   
Sbjct: 64  IKTLRFSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVLRRFEQ 123

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++    L ++       V    + LT  E+ ++ LL+       T+   +  +  
Sbjct: 124 VQTPSVVHHAGLVMDQTRHLCMVDNQEVELTATEFALLYLLAGNAEQVFTRNQMITRIKG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  + IDV +  +R+KL         I+TVWG GY  +EN
Sbjct: 184 SDYPVTDRSIDVQVATIRRKLGTYGS---RIKTVWGIGYSYKEN 224


>gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 220

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 128/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ ED+  +A  IE  L++  F   V   G+  ++     +FD ++LDLGL    GF 
Sbjct: 3   KILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGLPGKDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLRALR  +++ PV IL+   S+ D V GL+ GADDY++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTDR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++  G+LS++L  +  +V    + LT +E+ M+EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++DV++  LR+K+     G   I TV G GY L
Sbjct: 183 YDFDPGSNVVDVYVRALRRKI-----GSTRIHTVRGMGYRL 218


>gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
 gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH
           1]
          Length = 239

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD+    ++E +L +E ++V     G    ++ +  +FD + LD+ +    GF+
Sbjct: 3   RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR     TPV  ++      DKV GL+ GADDYISKPF   E++AR++A++RR + 
Sbjct: 63  VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRCQP 122

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                               DL +             I LT +E Q++ LL       + 
Sbjct: 123 APSQTPIAKDPTTHITFNMDDLQITPSKLRATRGETTIELTARELQILILLHDADGDVVH 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +     P  + +D  + +LRK++         I+TV+G GY 
Sbjct: 183 RQTLFQECWGHNRVPNSRTVDQTVSQLRKRIERDPKHPRIIQTVYGLGYR 232


>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
 gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 64/223 (28%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+++   +   L++++F+V      E+   + + +    ++LD+ +    GFE+
Sbjct: 7   ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIMMPGQNGFEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  LS  S   DK+RGL  G DDYI K  +  E+VAR++A++RRS   
Sbjct: 67  CRRIRAES-HVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSATR 125

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G L +NL  + V V+G+ + LT KE++++ L +       T +  L   +
Sbjct: 126 QPVEGRVLDYGRLRLNLSTREVVVEGNNVVLTPKEFELLRLFAEHPRHVFTYDQLLAKFW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG    +   I V + +LR+K+        ++  VWG GY   
Sbjct: 186 DG--VGDRHTIRVHLSRLREKIEADPNQSQFLVNVWGVGYRFE 226


>gi|326382019|ref|ZP_08203712.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
 gi|326199445|gb|EGD56626.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
          Length = 233

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD A+A  +   L  E  +  +   G D +++    ++  +ILDLGL  + G EV
Sbjct: 10  VLLAEDDTAIAEPLARALTREGNDCDIAGTGPDALKMVMTGDYGLLILDLGLPGMDGLEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R +R      PV +L+  +   D V GL +GADDY+ KPF   EL+AR+RA++RRS   
Sbjct: 70  CRRVRSELPQLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALMRRSVAA 129

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + ++  G + ++  A+ V V G  + L  +E+ ++  L  R    ++++  +  ++ 
Sbjct: 130 VDEEEVLDIGGIRLDSRARRVVVDGEDLTLANREFDLLRFLMERAGEVVSRDDIMTAVWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223
             D    K +D+ I  +R+K+ +     + +I TV G G+    
Sbjct: 190 STDLRSSKTLDMHISWIRRKIGDDRPKERRHIVTVRGVGFRFDP 233


>gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 224

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKNKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIRQ-RAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 220

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 120/220 (54%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDDK L+  +   L++E + V   + GE  ++  + Y    ++LD+ L D+ GF V
Sbjct: 4   ILIVEDDKELSSLLTDFLRAEGYTVSAVESGERAVQFFERYGARLVVLDINLPDMNGFAV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR     TP+ I+S  +  EDK+ GL  GADDYI KP++ + L+A+I+ I +R    
Sbjct: 64  CSKLRE-NADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S++    + +NL  KT E+ G  + L+ KE+ ++ LL   +   L KE   + ++   
Sbjct: 123 --SMLSASGVVLNLANKTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWGSD 180

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            + E++ + V I +LR+KL +       + TVWG GY   
Sbjct: 181 SDSELQTLHVHINRLRQKLGDDPKNARRLLTVWGVGYKFV 220


>gi|88607685|ref|YP_505647.1| DNA-binding response regulator [Anaplasma phagocytophilum HZ]
 gi|88598748|gb|ABD44218.1| DNA-binding response regulator CtrA [Anaplasma phagocytophilum HZ]
          Length = 276

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 129/240 (53%), Positives = 165/240 (68%), Gaps = 4/240 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTD-I 57
           MRILLIEDD A A ++E  L +E          +D  G  + K  ++D +ILD+     I
Sbjct: 1   MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+A+VR
Sbjct: 61  DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K V   G+ IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 121 RTRGHPESIVRVGNISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 180

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
           LY   DEP + KIIDVF+CKLRKKL  A  GKNYIETVWGRGYVL+E+  D+  +    A
Sbjct: 181 LYRELDEPSDDKIIDVFMCKLRKKLKVANNGKNYIETVWGRGYVLKEHPCDDGEDDASGA 240


>gi|87119340|ref|ZP_01075238.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
 gi|86165731|gb|EAQ66998.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Marinomonas sp. MED121]
          Length = 225

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  LA  +   L    +  +  D G+  I+  K  + D I+LDL L  + G E
Sbjct: 3   KILIVEDEPKLAELLTAYLAQSGYESHHLDRGDIVIDYLKQNQVDLILLDLMLPGLDGME 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R+   + P+ +L+  +   D++ GL+ GADDY+ KP++  E+VAR++A +RR   
Sbjct: 63  ICKQVRLFS-NIPIIMLTAKAEEIDRLLGLEMGADDYVCKPYSPREVVARVKANLRRVSF 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                  T    +++D   V  +G  I LT  E+Q+++LL         +E+ +  +Y  
Sbjct: 122 DQVEEPKTEGFELDVDRLRVTYKGELIDLTTVEFQLLQLLISEPGRVFGREIIMKRIYTD 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + ID  I KLRK++S  A   N I +V+G GY    N
Sbjct: 182 SRVVSDRTIDSHIKKLRKRISMVAPELNVIHSVYGAGYRFENN 224


>gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
 gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185]
          Length = 229

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 65/227 (28%), Positives = 118/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++     +  I+LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V   L +++  K V + G  + LT KE++++ LL   K    ++E  L
Sbjct: 124 ATAETERAPERLVYQSLVIDITKKKVSIDGEEVQLTKKEFEILLLLVQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 TRIWSNEVYVLDRTIDVNITRLRKKIGEYG---KCIVTRLGYGYCFE 227


>gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct]
          Length = 231

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 66/225 (29%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R++   
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   + V +  LR+KL +      ++ T  G GY LR++ 
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDSG 231


>gi|28901371|ref|NP_801026.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809918|dbj|BAC62859.1| putative two-component response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 253

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  +++ LK +  +V        G    +   FD +ILD GL D  G ++
Sbjct: 22  ILLIEDDDDLAELVQMHLKFQGHHVSRESSVAAGRNTYQQQSFDLVILDRGLPDGDGLDI 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR  +  TPV +L+      DKV GL++  DDYI+KPF+  E  AR+R ++RR    
Sbjct: 82  CHHLRQRQDWTPVLVLTARDGEMDKVDGLEADVDDYITKPFSVLEFQARVRNVLRRVNQV 141

Query: 123 AQSL---------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A+           +  GDL +      V +    + LT  E+ +++ L+ R     +K+ 
Sbjct: 142 AEKPTPEKAEDGALNFGDLKIIPQLHQVSLNDKDVALTATEFTLLQFLATRPGRVYSKDE 201

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+H+++         +   I +LR KLS +    ++I+TVWG GY  +   
Sbjct: 202 LLDHVWNTNHAGYHHTVCSTINRLRSKLSLSDSEHHFIQTVWGVGYKFQPRP 253


>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
 gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
           [Turicibacter sanguinis PC909]
 gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
           HGF1]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L  E + VY      +     K    D +ILD+ +    GFE
Sbjct: 4   KILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN-PDLMILDVMMPGQDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R   +S P+  L+   S  D ++G   G DDY++KPF+  EL AR+ A +RR+  
Sbjct: 63  FCKEIRSV-VSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLRRNER 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   QS ++   L +NL ++TV      + LT +EY+++ELL+L KN   +KE     +
Sbjct: 122 QSSREQSFLIFQHLKINLQSRTVLYFDECVPLTKREYEIVELLALNKNQVFSKEQIYELV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    E +   +   + K+R K        NY++TVWG GY  
Sbjct: 182 WGLDAEGDCATVAEHVKKVRSKFQTIQTDFNYLKTVWGVGYKW 224


>gi|254293636|ref|YP_003059659.1| transcriptional regulator [Hirschia baltica ATCC 49814]
 gi|254042167|gb|ACT58962.1| two component transcriptional regulator, winged helix family
           [Hirschia baltica ATCC 49814]
          Length = 223

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 84/228 (36%), Positives = 125/228 (54%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   ++  L    + V +   GEDG  L +   +DA+ILDLGL  + G 
Sbjct: 1   MRLLVVEDDPDLGRQLKTSLSEAGYAVDLAVDGEDGHYLGETEPYDAVILDLGLPKMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      +KV G  +GADDY++KPF  EEL+AR+RA++RRS 
Sbjct: 61  RVLEKWRAEGKVMPVLILTARDRWSEKVAGFDAGADDYLTKPFITEELLARLRALLRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  GDL V+  +    V G  I LT  EY+++  +   +   + +   + H+YD
Sbjct: 121 GHASSALELGDLRVDTSSARATVGGQPIKLTAHEYRVLSYMMHYQGRVVPRTELVEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
              + +   I+VF+ +LRKK+ +       I T  G GY L + A +E
Sbjct: 181 QDFDRDSNTIEVFVGRLRKKIGSD-----RILTERGLGYRLVDPAANE 223


>gi|182435928|ref|YP_001823647.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326776552|ref|ZP_08235817.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|178464444|dbj|BAG18964.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326656885|gb|EGE41731.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 220

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K LA S+   L +E F V V   G +G+       +D +ILD+ L  + G+
Sbjct: 1   MRLLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGAYDLVILDIMLPGMNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            V   LR A    P+ +L+      D+  GL +GADDY++KPF+   LVAR+RA++RR  
Sbjct: 61  RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A  ++  G L V+  A+ V      I LT KE+ ++E L+LR    ++K   L H++
Sbjct: 121 AGTAAPVLTVGALRVDTAARRVIRGEDEITLTAKEFAVLEQLALRAGQVVSKAEILEHVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  I++V+I  LR+KL  +A     I TV G GY L 
Sbjct: 181 DFAYDGDPNIVEVYISTLRRKLGASA-----IRTVRGAGYRLE 218


>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 223

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 135/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED + L  S+ + L    + V     GE+G+ L     +D IILD+ L  + GF
Sbjct: 1   MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR     + V +L+    +ED+V GL+SGADDY+ KPF+ +EL+ARI A++RR  
Sbjct: 61  ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A +L+  G+L++NL +K V V G  + L  +EY ++E L+L ++  ++++   + +YD
Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            + EP   ++D  I  LR K+ +     ++I T  G GY +R++
Sbjct: 181 DKIEPMSNVVDSAISSLR-KMIDHKDRPSFILTRRGHGYQIRQS 223


>gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
 gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina
           DSM 3645]
          Length = 247

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD++LA  +   ++   + V     G+DG+   +    D +ILDL L  + G E
Sbjct: 5   KVLIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKTPDLVILDLMLPVVDGHE 64

Query: 62  VLRALR--VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR   +     + +L+  S   D++ G   GADDY++KPF+ + L+ RI+A+VRR 
Sbjct: 65  VCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKALVRRK 124

Query: 120 RGHAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RG   S   +I +  ++++         G  + LT  E++++E L+ +      +   ++
Sbjct: 125 RGADNSLDDVIASQGITIDRRRHRATASGRPLQLTRSEFRLLETLTRQPGRVFERSELID 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                      + IDV I  LR+K+++ A     IETV G GY  R+  
Sbjct: 185 AALGEDTVVMERTIDVHIRALRRKMADEA---ELIETVRGVGYRFRDPG 230


>gi|49081810|gb|AAT50305.1| PA4885 [synthetic construct]
          Length = 230

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D +ILD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVILDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR      PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLRKKH-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +       I TV G GYV  E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DNPFPNKLIHTVRGIGYVCEERP 223


>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
 gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
           ATCC 14672]
          Length = 228

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +  +++L L+ +   V+  + GE+G+E    +  D ++LDL L  + G +
Sbjct: 3   RVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLMLPGMSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R  +   P+ +++      D V GL++GADDY+ KP     L ARIRA++RR   
Sbjct: 63  VCRRIR-DRDQVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLRRQDA 121

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G        G+L V+     V  +G  + L   E +++  LS       +++  L 
Sbjct: 122 SLPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRLLLTLSASPGQVFSRQQLLE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++     +++++D  + +LR KL        Y++TV G GY  
Sbjct: 182 AVWEHSYHGDIRLVDACVKRLRNKLGE-GRNPRYVQTVRGFGYRF 225


>gi|307326237|ref|ZP_07605434.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888180|gb|EFN19169.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 226

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 131/224 (58%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LAH++   L +E ++V +   G  G+ + +  E+  ++LDL L  + G+
Sbjct: 1   MRILVVEDEVDLAHTLHTGLTAEGYSVDLAHDGRHGLWMARTGEYALVVLDLMLPGLNGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   LR    +TP+ +L+      D+   L +GADDY++KPF+   LVAR+RA+VRR+ 
Sbjct: 61  KVCAQLRREGNATPILVLTAKDGDWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  GDLS+++  +     G R+ LT +E+ ++ELL+ R    ++K   L H + 
Sbjct: 121 TVAPPVLAVGDLSLDVAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLLYHAWP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  +  +++  +  LRKK+ + A  +  ++TV G GY L ++
Sbjct: 181 -DEAQDPNLVEARVSALRKKV-DTAFHRQSLQTVRGTGYRLVDD 222


>gi|294340536|emb|CAZ88920.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As]
          Length = 225

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 79/218 (36%), Positives = 117/218 (53%), Gaps = 5/218 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  +    L+     V     G   +   +  E++ ++LDLGL    G 
Sbjct: 1   MRILLVEDDHMLGAATREALRDATHAVDWVLDGASALSAAQGGEYELMLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR +  + P+ IL+   ++ED+VRGL  GADDY+ KPF   EL+ARIRA+ RR  
Sbjct: 61  SVLQALRQSGSNLPILILAARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ ++  G L ++  ++ V  QG    LT +EY ++  L LR    L++    + +Y 
Sbjct: 121 GQAQPVLSNGVLELDPVSREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
             +E E   ++  I  LRKKL       + I+ V G G
Sbjct: 181 WNEEVESNAVEFLIHSLRKKL-----APDVIKNVRGVG 213


>gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
 gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
          Length = 231

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL++D+ A+   +   L  E + V     G++ ++  +    D II D+ +  + G++
Sbjct: 3   HILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
            + A+   +   P   ++      D++  L  GADDY++KPF+  EL  R++ ++RR   
Sbjct: 63  FIDAVLQLREDQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRRIQP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   QS++     +++     V +    + L+ KE+Q++ L          K      ++
Sbjct: 123 KKAGQSVLSYAPFAIDEGQHRVTLYDQPLQLSLKEFQLLALFLKNPGRVFAKSELFLKIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY--IETVWGRGYVL 221
           +     +   ++V I  LR KL+  AG + Y  IETVWG GY L
Sbjct: 183 ETDYMEDANTLNVHIHSLRDKLAKLAGQRPYPKIETVWGLGYRL 226


>gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
 gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM
           12042]
          Length = 232

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 4/224 (1%)

Query: 6   IEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRA 65
           +EDD +L + +   L  E + V V    ++   L    +FD +ILD+ L D  G+++ R 
Sbjct: 7   VEDDLSLINGLSFALNKEGYAVDVARTKQEAEALWLKEKFDLVILDVSLPDGSGYDLCRQ 66

Query: 66  LRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG--HA 123
           +R    + P+  L+      + + GL  G DDYI+KPF     ++RI A++RR      A
Sbjct: 67  IRQTS-TVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQENFSPA 125

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD-GR 182
              + +  + V    ++V   G  ++LT  EY+++ LL    N  LT E  L+ L+D   
Sbjct: 126 DRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLWDCDE 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  +   + V+I +LR K+ +       I T+   GY      +
Sbjct: 186 NYVDANTLTVYIRRLRAKIEDDPSDPKKIVTLRRLGYKWNVPER 229


>gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4]
 gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4]
          Length = 225

 Score =  248 bits (634), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 125/222 (56%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD+     +   L S   ++     G +G+       +D +I+D  +  + G 
Sbjct: 1   MKILVIEDDQTTRKYLVKGLSSAGHSIDCIGDGREGLSAGLDTRYDILIVDRMIPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A + TPV  L+ MS ++D+V GL++G DDY+ KPF   ELVARI A+VRR  
Sbjct: 61  NLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRPP 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             A+ + +  GDL ++L A+T    G  I L  +E+ ++ELL   +   LTK MFL  ++
Sbjct: 121 IAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +++  I +LR K+ +     + + TV   GY L
Sbjct: 181 NFNFDPQSSVVETHISRLRAKI-DKPFSTSLLHTVKNTGYTL 221


>gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus
           pseudintermedius ED99]
          Length = 228

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D++ +    +   + E ++V     G++ ++L      D +++D+ + ++ G+E
Sbjct: 3   HILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN-VDVMVIDIMMPEMNGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R ++   +  P   L+  +S +D + GL  GADDY+ KPF+  ELV R++ ++ R   
Sbjct: 62  VVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q  I  G L +N   KTVE++G  I    KE++++   +  ++  L+K   L  +
Sbjct: 122 TSPSTQETIHCGRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      ++  ++V + ++R+KL      +  I TVWG GY  +
Sbjct: 182 WGYEYYEDMNTLNVHVHRIREKLEKYGYDEYIIATVWGLGYKFQ 225


>gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1]
 gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1]
          Length = 225

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 123/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LK   F V     G DG+      E+D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKDRGFAVEWVANGRDGMARALSDEYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  IVTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQA 122

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               +++ +  G L+++L A+     G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAQSETTLEVGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LR+K+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRRKI-DPPDAPPMIRTVRGAGYIL 224


>gi|325277133|ref|ZP_08142779.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324097710|gb|EGB95910.1| two component heavy metal response transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 225

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 122/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ ED+      ++  L    FNV     G D ++      +D +ILD+ +  + G+
Sbjct: 1   MKLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A    PV  L+    +ED+V+GL+ GADDY+ KPF   EL+AR+R ++RR  
Sbjct: 61  EVLRMVRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   Q+ +   DL V+L  +     G RI LT KE+ ++ELL  R+   L K +  + ++
Sbjct: 121 GSPTQTTMKIADLEVDLMKRRAIRGGKRIDLTAKEFSLLELLLRRRGEVLPKSLIASQVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   + +  +I+V + +LR K+ +    K  I T  G GY++
Sbjct: 181 DMNFDSDTNVIEVAVRRLRAKIDDDFDLK-LIHTARGMGYMM 221


>gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
 gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family
           [Burkholderia phytofirmans PsJN]
          Length = 260

 Score =  247 bits (633), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|330880142|gb|EGH14291.1| DNA-binding response regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 245

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L++   +V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDQRLAELTSDYLQNNGLSVSIEGNGALAAARIIDEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 67  ICRTVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 248

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD+ +   +   L S          G +   + +    D I+LDL L    G  
Sbjct: 9   HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    S PV +L+      D++ GL+ GADDY++KPF   EL ARIR+++RR++ 
Sbjct: 69  LCRNLRATS-SVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQA 127

Query: 122 HAQSL-------IVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
              ++       +     +++L     V   G  + L+G E++++++     N  L ++ 
Sbjct: 128 LPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQ 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            L        +P  + +D+ I +LR+KL + A     I+TV   GYVL      E  
Sbjct: 188 LLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTTEGA 244


>gi|301166631|emb|CBW26207.1| putative two-component system response regulator [Bacteriovorax
           marinus SJ]
          Length = 224

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL+EDD +L  S++  L  E   V          EL    E   IILD  L D  G +
Sbjct: 3   KVLLVEDDDSLGSSLKSYLTGEGHEVVWAQSLSMARELKSDEE--IIILDWMLPDGQGVD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---- 117
            L+ LR A+I+ PV +L+  + + DKV GL++GA+DY++KPF   EL+ARIR  +R    
Sbjct: 61  FLKELREAEINKPVIMLTARTDLIDKVIGLEAGANDYMTKPFEPRELIARIRVQIRDHAK 120

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    +  ++  GDL +N + + +   G  I  T  E+  + LL+   N   ++E  LN 
Sbjct: 121 KDHDSSDGVLTRGDLVINQNEREIRWHGEVIEFTKMEFDFLTLLAESPNRAFSREEILNK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++   + P  + +D  + ++R+KLS+       IETV G GY  R
Sbjct: 181 VWGYENYPSTRTVDTHVLQIRQKLSD-----ELIETVRGIGYRFR 220


>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
           Kyoto]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|261366515|ref|ZP_05979398.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571787|gb|EFB77322.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 110/227 (48%), Gaps = 7/227 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I  +EDD +L + +   +K + + + +     +  +L     +D +ILD+ L D  G
Sbjct: 1   MKHIFFVEDDLSLINGLSFAIKKQGYELTIARTSVEAEQLWTNGNYDLVILDVTLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F++ R +R +    P+  L+      D + GL  G DDY++KPF     ++RI A++RRS
Sbjct: 61  FDLCRKIRASS-KVPIMFLTAADEETDIIMGLDIGGDDYMTKPFKLAVFLSRINALLRRS 119

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A++ + +  + + L  + V   G  + LT  EY+++ L     N  L+ E  L
Sbjct: 120 ENFNQEQAETELQSNGIQIQLLKQKVIKNGTPLDLTASEYKLLCLFMENPNIILSPEQIL 179

Query: 176 NHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + L+D  +   +   + V+I +LR K+ +       I TV   GY  
Sbjct: 180 SKLWDCDEKYIDNNTLTVYIRRLRTKVEDNPADPQKIVTVRRMGYKW 226


>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           M50/1]
          Length = 224

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E + +     G + +E+C+  +FD IILD+ + ++ GF 
Sbjct: 3   RILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K   PV +LS      DK+ G + G DDY+ KPF+  EL+ R++ ++ R+  
Sbjct: 63  TCREIRKFK-EIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +     L V+   +TV V G R+ ++ KEY+++  L   +N  L +E  +  
Sbjct: 122 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LR  L      + ++ T+ G GY   
Sbjct: 182 VWGYDYYGDDRTLDTHIKLLRSSLGEY---RKFLVTLRGVGYRFE 223


>gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 251

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 14  QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 74  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 133

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 134 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 193

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +     +
Sbjct: 194 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSAPRFIQTVRGRGYVFVPDGEAHAQAH 251


>gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis
           TX1342]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+IEDD ++A   +  L+  +  V +   G+ G+E      FD IILD+ L  + 
Sbjct: 1   MKPHVLIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVMLPTMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ RA+R  K  TP+ I+S      DK+RGL  GADDYI KPF+  ELVAR +A + R
Sbjct: 61  GFEICRAIRKKK-QTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +          L+   +++V+  A  V V  + +  T KEY+++  L    N    KE 
Sbjct: 120 YQLLSKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEE 179

Query: 174 FLNHLYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               ++     + EV  + V I ++R+KL  A    + IET+WG GY  
Sbjct: 180 LFESVWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRF 228


>gi|222082916|ref|YP_002542281.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221727595|gb|ACM30684.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 240

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  +AH +  ++KS  F       G +   L   ++FD I+LD  L    GF 
Sbjct: 8   HILIVEDDTDIAHMLVELVKSNGFEATSAASGGEMDRLLARHKFDLIVLDGMLPGEDGFS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR ++ S P+ +L+ +    D++ GL+ GADDY++KPFN  EL+ARI++I+RR+  
Sbjct: 68  ICRRLRSSR-SIPILMLTALREDVDRILGLELGADDYVTKPFNSRELMARIKSILRRASF 126

Query: 122 HAQS-----LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       +      ++  ++ +   +G  + +T  E+ ++       N  LT+E  L
Sbjct: 127 SQQPEEDVAPMTFAGWRIDPKSRQLFDAEGAEVSMTTAEFDLLWAFCSNPNKVLTREQLL 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  + G   P  + ID  I ++R+K+        +I+TV   GY+     +
Sbjct: 187 SMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVE 237


>gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
 gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system
           [Clostridium tetani E88]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD  LA+SIE  L  E FN+   D  +   +  K   FD IILD+ L D  G++ 
Sbjct: 4   ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVMLPDGNGYDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A    PV  L+      + V GL  GADDYI+KPF  +EL++RIRAI+RRS+  
Sbjct: 64  CKEIRKAS-EVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKTF 122

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++   L+++GD+ V      +E     I LT  EY+++ +        L++ + L  L+D
Sbjct: 123 SKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELWD 182

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  +   + V+I +LR+K+ + AG   YI T  G GY  
Sbjct: 183 AEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGYRW 224


>gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
 gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp.
           HTCC2649]
          Length = 238

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L  ++ + L++ ++ V     G   ++       D +ILDLGL DI G +
Sbjct: 5   RILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQLPDLVILDLGLPDIDGVD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R     TPV +LS  +   DKV  L  GADDY++KPF  +EL+ARIR  +RR++ 
Sbjct: 65  VLRRIRETS-QTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALRRTQD 123

Query: 122 HAQSLI---VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   +    T    ++   +   V G  + LT  E+ ++E+L+      + ++  L  +
Sbjct: 124 ESTPPLAAFETQHFVLDFTERRAVVAGEVVRLTPTEWSLLEVLARHTGHLVPQKDLLREV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      E   + V+  +LR+KL        Y+ T  G+GY L
Sbjct: 184 WGPHYGRESNYLRVYANQLRRKLEPDPSEPRYLLTEPGQGYRL 226


>gi|300689749|ref|YP_003750744.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07]
 gi|299076809|emb|CBJ49419.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07]
          Length = 221

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +  ++E  L+   + V     G+  I++     +D ++LDLGL    G 
Sbjct: 1   MRVLLIEDDPMIGAAVEAALRDAAYAVDWVRDGQTAIDVTGHQHYDVLLLDLGLPGQDGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR      PV IL+   ++ ++VRGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  AVLRTLRARGNPVPVLILTARDAVGERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  ++  G LS++     V    G  + L+G+E+ +++ L LR    L++      +Y
Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRSELEERIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               E     ++  I  LRKKL   +     I+ V G G++
Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGADS-----IKNVRGVGWM 216


>gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 232

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 84/229 (36%), Positives = 128/229 (55%), Gaps = 3/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ +A  ++  L+ E F+V     GE+G  L     FD ++LDL L    G 
Sbjct: 1   MRLLLVEDEREIADFLKARLEGEGFDVVAAVTGEEGFFLANEQVFDVVLLDLTLPGRGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR   I+ PV ++SG  S+EDKV GL +GADDYI KPF   E++ARIR ++RR  
Sbjct: 61  EVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPFAFPEVLARIRVVLRRGW 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+  GDL+++L  + V   G  I LT +E++++E L       +T++M    ++ 
Sbjct: 121 ADQVLLLRCGDLAMDLITRIVTRGGRTIALTAREFELLEYLLRHPGRVVTRDMLARDIWQ 180

Query: 181 GRDEPE--VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                     +IDV I ++RKKL +    +  + T  G G+ L+    D
Sbjct: 181 EDTRATNLDNVIDVHIARIRKKL-DHGHERKLLHTQRGVGFQLKNPELD 228


>gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 232

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV V   GE  +++      D ++LD+ +    G +
Sbjct: 3   KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVLD-NTIDLLLLDVMMPKKNGID 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                   ++   +    L +N   +        + LTG E+ ++ LL+ R    +++E 
Sbjct: 121 TDQQQAGDNSAPTLEVDGLRLNPGRQEASFDDIVLDLTGTEFTLLYLLAQRLGQVVSREH 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +   R  P  + ID+ I  LR+KL     G  + +T+ GRGY++   A
Sbjct: 181 LSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGLPWFKTLRGRGYLMVSAA 232


>gi|163731900|ref|ZP_02139347.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
 gi|161395354|gb|EDQ19676.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149]
          Length = 239

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 154/228 (67%), Positives = 185/228 (81%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD   + S+ELML   N NVY TDLGE+GI+L K Y++D I+LDL L D+ G 
Sbjct: 1   MRVLLVEDDPTTSKSVELMLTHANLNVYATDLGEEGIDLAKLYDYDLILLDLDLPDMNGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR+A+I TP+ ILSG    E+K++G   GADDY++KPF++EELVARI AI+RRS+
Sbjct: 61  EVLRQLRLARIETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH+QS+I TG +SVNLDAKTV V    +HLTGKEYQM+ELLSLRK TTLTKEMFLNHLY 
Sbjct: 121 GHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           G DEPE+KIIDVFICKLRKKLSNA  G+NYIETVWGRGYVLR+    +
Sbjct: 181 GMDEPELKIIDVFICKLRKKLSNATDGENYIETVWGRGYVLRDPEPSQ 228


>gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia]
          Length = 229

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  LA  +   L +        D G   I+    Y+ D ++LDL L    G +
Sbjct: 10  KILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFARYQPDLVLLDLMLPQRDGVD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +    PV +++      D++ GL+ GADDYI KPF+  E+VAR+ A++RR R 
Sbjct: 70  LCRELRASS-DVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L ++  A      G  + LT  EY+++  L         ++  L+ LY  
Sbjct: 129 DPGARAN-GGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLD 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +D  +  LR+KL++A      I +V+G GY
Sbjct: 188 HRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGY 225


>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
           yrkP
 gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
 gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 231

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 67/227 (29%), Positives = 116/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD+ +   +E  L    + V     G+  ++L      D +ILD+ +  I G E
Sbjct: 4   RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGISGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
             + +R +  + P+  L+  SS  DK  GL +G DDY++KPF++EEL AR+ A +RR   
Sbjct: 63  TCQHIRKSS-NVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +   ++ ++ G L V+ +   V  +  +I L+  EY++++LL  ++N   + +   
Sbjct: 122 YQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181

Query: 176 NHLYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++           + V I KLR K+ +      YI+T WGRGY  
Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228


>gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum
           ATCC 27405]
 gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum ATCC 27405]
 gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 2360]
 gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum JW20]
 gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family
           [Clostridium thermocellum DSM 1313]
          Length = 232

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I + +D+  + + I+  L  E ++V     G   +E       D +++D+ + +I GF +
Sbjct: 7   IYIADDEINICNIIKSFLVKEGYDVETFTDGRSILEAFNKKPADLLVIDIMMPEIDGFSL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              +R    S P+ I+S   +  DK+ GL  G+DDY++KPF+  EL+ARI++I RR    
Sbjct: 67  CSTIRRQS-SVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIELD 125

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +   I  GD+ +N+D K  E  G  I LTG E+ ++  L+  KN  +++   L+ 
Sbjct: 126 KMHNDSVREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELLDK 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++   +  E +  D  I +LRKKLS++      IETVWG G+ + E  
Sbjct: 186 VWGFENYVETRATDDTIKRLRKKLSDSGSSLK-IETVWGFGFKVNEEG 232


>gi|290475733|ref|YP_003468622.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
 gi|289175055|emb|CBJ81858.1| response regulator in two-component regulatory system with BaeS
           (OmpR family) [Xenorhabdus bovienii SS-2004]
          Length = 235

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 114/220 (51%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   +   L++ ++       G++ I   +  + D I+LD+ L  + G  +
Sbjct: 10  ILIVEDEPKLGQLLIDYLQAADYQTQWLIRGDEVIAHVQKRQPDIILLDIMLPGLDGISI 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 70  CREIRRFS-DVPIVMMTARTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYRP 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              +   G L+++ +          + LT  E+++++++S +     +++  LN+LYD  
Sbjct: 129 QDIISEHGSLTIDENHFQARYLDRVLELTPVEFRLLKIMSSQPGRVFSRDQLLNNLYDDH 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + ID  I  LR+KL      K++I +++G GY   
Sbjct: 189 RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228


>gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia pseudomallei 9]
          Length = 241

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226


>gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 220

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+  +   L      V       D        +F A+ILDL L D  G 
Sbjct: 1   MRILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPDGSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR     TPV +L+   ++ D++ GL  GADDY+ KPF+ +EL ARIRA+VRR+ 
Sbjct: 61  DVLRGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G + ++  + TV V G  + ++ +E+ ++  L  R +   +K      LY 
Sbjct: 121 GRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V +  LR K+   A     IETV G GY +R  A
Sbjct: 181 WQEEVESNAVEVHVHNLRTKIGKHA-----IETVRGLGYRMRAPA 220


>gi|83747390|ref|ZP_00944430.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551]
 gi|83725977|gb|EAP73115.1| Hypothetical Protein RRSL_02911 [Ralstonia solanacearum UW551]
          Length = 645

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  +   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 411 KVLLIEDDDRLAQLVSEYLGNYEFTVEVVRRGDTAVAAVREHQPALVILDLMLPHMDGME 470

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      PV IL+      D+V GL+ GADDY+ KP     LVAR RA++RR   
Sbjct: 471 VCRRIRAFS-RVPVLILTARVDTYDQVAGLEIGADDYVLKPVEPRLLVARARALLRRVVP 529

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        ++V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 530 ALPAAEPAVPHDDVLVFGELAISPPNRTVTWRGQLVDLKTAEFNLLLILARAAGTVLSRD 589

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L  L     +   + +D  I +LR++  +A+   + I+T+WGRGY+   +A +E
Sbjct: 590 DILKQLRGIEFDGLDRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWEE 645


>gi|312796926|ref|YP_004029848.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
 gi|312168701|emb|CBW75704.1| Two-component response regulator kdpE [Burkholderia rhizoxinica HKI
           454]
          Length = 232

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+LIED+K +   +   L+++   V+  D G  G+        D +I+DLGL D  G +V
Sbjct: 8   IVLIEDEKQIRRFVGTSLQAQGMTVFDADTGRQGLVEAATRRADLVIVDLGLPDTDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR      P+ +LS  S  E KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELR-GWTDLPIIVLSARSQEEQKVAALDAGADDYLTKPFGVSELLARIRAQLRRRNRG 126

Query: 123 AQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            Q     +  G + V+L A+ V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GQDDMPQVQFGGIVVDLSARRVTRNGEVVHLTPIEYRLLVTLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        +I T  G GY L
Sbjct: 187 GPSHVESHHYLRIYMGHLRQKLERDPAQPEHIVTETGVGYRL 228


>gi|94313390|ref|YP_586599.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
 gi|93357242|gb|ABF11330.1| two component heavy metal response transcriptional regulator,
           winged helix family [Cupriavidus metallidurans CH34]
          Length = 206

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 1/207 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+      +   L    F   +   G DG+   +   +D I+LD+ L  + G+
Sbjct: 1   MRILIVEDEPKAGDYLLKGLTESGFVADLARDGVDGLAHAREQHYDLIVLDVMLPGMDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR  K  TPV  L+    + D+++GL+ GADDY+ KPF   ELVARIR I+RR  
Sbjct: 61  QVLRELRRDK-DTPVLCLTARDELSDRLKGLELGADDYMVKPFAFAELVARIRTILRRGP 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V   G +I LT KE+ +++LL+ R+   L++ +  + ++D
Sbjct: 120 LRESEFIEVADLQIDTIRRRVTRAGQKIDLTSKEFALLQLLARRRGEVLSRSLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGG 207
              +    ++DV I +LR K+ +    
Sbjct: 180 MNFDSNTNVVDVSIRRLRAKVDDPFPN 206


>gi|332188679|ref|ZP_08390394.1| response regulator [Sphingomonas sp. S17]
 gi|332011296|gb|EGI53386.1| response regulator [Sphingomonas sp. S17]
          Length = 222

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 88/221 (39%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD AL  +I   L++E+  V + D G D         +DA +LDLGL D  G 
Sbjct: 1   MRILLVEDDPALGPAIARALRAEHCAVDLFDTGVDAGHAGDTEIYDAAVLDLGLPDGDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR  R A  + PV IL+      DKV G ++GADDY++KPF  EELV R+RA+VRR+ 
Sbjct: 61  TLLREWREAGRALPVLILTARDGWSDKVAGFKAGADDYLTKPFRVEELVMRLRALVRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHAQ  +  G LS +      E+ G  + LT  E++++  L LRK   + +   L  +Y+
Sbjct: 121 GHAQPRLTCGPLSFDSQTGQFELDGLPLKLTAFEWRVLSALMLRKEAVIPRLELLERVYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  + +   ++V + +LRKK+         IETV G GY L
Sbjct: 181 GDADVDSNSLEVIVGRLRKKIGAD-----LIETVRGMGYRL 216


>gi|262376780|ref|ZP_06070008.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308490|gb|EEY89625.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 238

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA   +  L      V V   G   I      + D ++LD+ L    G  
Sbjct: 9   KILIVEDDERLARLTQEYLIRNGLEVGVEPDGNRAIRRIIAEQPDMVVLDVMLPGADGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+  +   D+V GL+ GADDY++KP     L+ARIRA++RR+  
Sbjct: 69  ICREVRP-HYHQPILMLTARTEDMDQVLGLEMGADDYVAKPVQPRVLLARIRALLRRTDK 127

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      I   DL ++   ++V + G  +  T  EY ++ LL+      L++E     
Sbjct: 128 VPEDEVAQRIEFDDLVIDNGGRSVTLNGDLVDFTSAEYDLLWLLASNAGRILSREDIFER 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           L     + + + IDV I ++R K+ +       I+TV  +GY+  + 
Sbjct: 188 LRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKE 234


>gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1]
 gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1]
          Length = 227

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE G+EL     +D I+LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ I++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                      D+ ++L AK V +Q   ++LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDVDN---KYIHTIRGFGYMFQ 223


>gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300074627|gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 239

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 4/236 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   +A +I   L      V     G           +D +ILD+ L    GF
Sbjct: 1   MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRL-SESYDLLILDVMLPQQDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ LR     TPV +L+  + +E++VR L  GADDY+ KPF+  EL ARIR ++RRS 
Sbjct: 60  SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +L+   +LS++  +++  + G  I LT +E  ++E+++ R      K+  ++ L+ 
Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLETA 236
             D P    ++ ++ +LRKKL+ AA     I T+ G GY L  +A  E      TA
Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFE---IRTLRGLGYQLVLHAPAEPGAGAGTA 232


>gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 227

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 105/220 (47%), Gaps = 3/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  LA  ++  L +  +     D G   +   +      I+LDL L    G +V
Sbjct: 7   ILIVEDEPKLAALLQDYLVAAGYPTLCLDNGLQVVPTVRAQPPRLILLDLMLPGRDGMQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR    + P+ +++      D++ GL  GADDYI KPF+  E+VAR++AI+RR    
Sbjct: 67  CQDLRGFS-AVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRGPQL 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             S      L ++       + G  + LT  E +++   +       +++  L+ LY   
Sbjct: 126 LSSTP--ARLLIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSRDQLLDKLYSDH 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + +D  I  LR+KL  A  G+  IE+++G GY  +
Sbjct: 184 RVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGYRFQ 223


>gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
 gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator
           protein [Limnobacter sp. MED105]
          Length = 241

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 129/234 (55%), Gaps = 13/234 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--------FYEFDAIILDL 52
           M++L++EDD  ++  +E  LK+E +   V      G+ + K         +E   +ILD+
Sbjct: 1   MKVLIVEDDARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDV 60

Query: 53  GLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112
            L D  G +V + LR    + PV +L+ ++S+ED+V GL+ GADDY+ KPF  +E++AR+
Sbjct: 61  MLPDGSGLDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARL 120

Query: 113 RAIVRR----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            A+ RR    +   A+  +   DL+++L+   +   G  I LT KE  ++ELL       
Sbjct: 121 EALGRRVGNAAPKQARKNLEVADLNLDLEKMRLSRAGREIQLTAKELALVELLMSAPGRL 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++E  L++++   ++P   ++DV+I +LR K+ +  G +  I T  G GY L 
Sbjct: 181 FSRERILSNVWGVNEDPLTNVVDVYIRRLRTKI-DLEGLQPLIHTQRGLGYRLE 233


>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
           [Candidatus Koribacter versatilis Ellin345]
          Length = 247

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 7/222 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  L   +   L     +V     G DG++     ++D +ILD+ L  + GF +
Sbjct: 22  LLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGFTL 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR      PV +L+  ++  D+++GL++GADDY+ KPF+ +EL+AR+RA++RR+   
Sbjct: 82  LSQLRRRTP-VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRASQA 140

Query: 123 AQSLIV---TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +      D+ +N   + V ++   I LT  E+ ++ LL       LT+E     + 
Sbjct: 141 PADALFDFTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEISLAIL 200

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + R     + +DV I  +R KL   A    +I+TV G GYV 
Sbjct: 201 ERRLMSHDRSLDVHISHIRSKLETLA---PFIQTVRGVGYVF 239


>gi|150392423|ref|YP_001322472.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149952285|gb|ABR50813.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 128/223 (57%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIED++ L+  I   L+   + V     GE+ +E  + YE+D IILDL +  I G 
Sbjct: 1   MKILLIEDEEMLSAIIAKGLRKVGYAVDTVFDGEEALEYYEIYEYDIIILDLNIPKIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR +R       + ILS  + +++++ GL  GA+DY+ KPF+  EL ARIR ++RR+ 
Sbjct: 61  NVLRTIRKKDTDQKILILSARTKVDERILGLDEGANDYLIKPFDFGELEARIRNLLRRNF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I+  +  V+++AK V      ++LT KEY + E L L KN T++ E  + H++D
Sbjct: 121 SGTPTTIMLDNFIVDINAKRVICDNDVLNLTRKEYNIFEYLILNKNKTISAEQLVEHIWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    +   I  L+KKLS     +  I+T+ G+GY++ E
Sbjct: 181 SEFDPFSNTLRYHIHTLKKKLS-NFSNEEVIKTIRGQGYIIEE 222


>gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 228

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 12/227 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +A S+   L    F V     G   +       +D ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDEPVAQSLRRGLIRYGFEVEWVSTGAAAL--GHEGPYDVVLLDLGLPDTDGL 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RALR      P+ ++S  S   D+V GL+ GADDY++KPF   E++ARIRA++RR++
Sbjct: 59  DVCRALRERG-DVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQ 117

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +            LS++  A  V + G  + L  KEY ++  L+      +++E  +
Sbjct: 118 PRTEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIM 177

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D       K +DV +  LR+KL     G   IE V G G+ L 
Sbjct: 178 EAVWDANWFGPTKTLDVHVAALRRKL----AGAVVIEAVRGVGFRLE 220


>gi|206973121|ref|ZP_03234043.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|229182338|ref|ZP_04309612.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229191798|ref|ZP_04318772.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206732005|gb|EDZ49205.1| regulatory protein VanR [Bacillus cereus AH1134]
 gi|228591672|gb|EEK49517.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228601147|gb|EEK58694.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 238

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 61/210 (29%), Positives = 105/210 (50%), Gaps = 8/210 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L+ ENF V     GE  ++  +    D  I+D+ +  + G+++++ +R   +  P+ IL
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIMMPKMDGYQLIKKIRET-LQFPILIL 79

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-------GHAQSLIVTGD 131
           S  S   DK+ GL  GADD+I+KPF+  E++AR++A +RRS           +  I  GD
Sbjct: 80  SAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVKGKEKQIHMGD 139

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L ++  + T+      I L+  EY+++ L         TK+     ++      +   I 
Sbjct: 140 LVLDHHSCTLYKSSETITLSATEYKILTLFMEEPGRIFTKKQIFESVWSDYYCADDNTIM 199

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           V I +LR+KL ++     YI+T+ G GY  
Sbjct: 200 VHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
 gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
          Length = 237

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  +   +   L    F+V     G++   +      D I+LD+ +    GF 
Sbjct: 6   QILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVMMPGDDGFT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+  S   D++ GL+ GADDY++KPF+  EL+ARI+A++RRS  
Sbjct: 66  LCQKIRRTS-QVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLRRSSY 124

Query: 120 -RGHAQSLIVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +       +     ++   + +  +       L+G E+ M++L     N  L+++   +
Sbjct: 125 TKPTQGRYFIFAHWKLDTLTRQLINQHDNATTELSGSEFNMLKLFVTNPNQVLSRDALSD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   P  + ID+ + +LR+KL + +     I+T+ GRGYVL
Sbjct: 185 ATRGREALPLERGIDIQLSRLRQKLGDNSKSPTLIKTIRGRGYVL 229


>gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 3/232 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           R L+IEDD   A  I   LK   +   V   G +G+EL    E+D IILD  L   + G 
Sbjct: 3   RCLIIEDDTHNALYIAKGLKEIGYEATVCADGIEGMELAVGGEWDVIILDRMLPQGMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L ALR     TPV ILS +S+I+++VRGLQ+G +DY++KPF   EL AR+ A++R ++
Sbjct: 63  SILAALREMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQ 122

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +   DL VNL  ++VE  G  + L  +E++++  +   K   LT+ M L  ++
Sbjct: 123 PNEVIRELCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           + + +P+  +ID  I +LR K+         I T    GY+L  N + E  +
Sbjct: 183 NYQFDPQTNVIDAHISRLRNKVDKGFAVP-LIHTRRNLGYILTPNPQTEPAD 233


>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
 gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
          Length = 234

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 116/226 (51%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D++ +   +E++L +E F V     G++ ++       D IILD+ +    G++
Sbjct: 8   RILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDR-TDDSIDLIILDVMMPQKSGYK 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R  K   P+  L+      DKV G   G DDY+SKPF+  ELV+R+++++RR   
Sbjct: 67  ACSEIRE-KTRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRRYYV 125

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     + +V  DL ++ DA+ VE+ G  + LT  EY+++EL+   +    + +  
Sbjct: 126 YQGSAPAEKSNKLVIRDLVLDKDAQNVEIGGEIVTLTDIEYRILELMMDNRKKVFSAQNI 185

Query: 175 LNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++          + V I  LRKKL + +    YI+T WG+GY
Sbjct: 186 YESIWNEPYFYSANNTVMVHIRNLRKKLKDNSQEPQYIKTAWGKGY 231


>gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica]
          Length = 234

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 114/222 (51%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+  L   +   L + ++       G++ +   + +  D I+LDL L    G  V
Sbjct: 10  VLIVEDEPKLGQLLIDYLNAADYKTQWLLRGDEVVPYVQQHNPDIILLDLMLPGCDGLSV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +++  +   D++ GL+ GADDYI KP++  E+VAR++ I+RR    
Sbjct: 70  CREIRCFS-DIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCY-R 127

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q ++   DL ++        +   + LT  E+++++ +++R    L+++  LN+LYD  
Sbjct: 128 PQDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQLLNNLYDDH 187

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + ID  I  LR+KL      K +I +++G GY    +
Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDSNKTFIRSIYGLGYRWEAD 229


>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
 gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
           12442]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++D+  +   + L L    +N      G++ I   +   F  ++LD+ +  + G+
Sbjct: 2   MDILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMDGW 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E    +R    + P+ +++      D ++GL+ G+DDYI+KPF++ EL+ARI A++RRS 
Sbjct: 62  ETCNRIRSFS-NVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H Q  +    +  +     + V    + LT  E+ ++ L     N  L+++  +  ++ 
Sbjct: 121 QHEQ--LRYKGILWDEAKHFISVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVL 221
                E + +D  I  LR KL  N      +++TV+G GY  
Sbjct: 179 LDTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYRW 220


>gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 231

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 3/228 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+++A  I   L+           G+   +  +   FD  ++D  L    G 
Sbjct: 5   MNVLLVEDDQSVAKFICSELERVGHRSVHCTEGDLAYDTARDQAFDVWVVDRMLPGRDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++++ LR     TP  +LS +  ++D+V+GL+SGADDY+ KPF  +EL+AR++A+ RR  
Sbjct: 65  QLIQDLREIGNETPALVLSALGEVDDRVKGLRSGADDYLVKPFAMDELLARLQALSRRGV 124

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +    + +   DL ++L  + V  +G  + L  +EY+++E L       +T+ M L H+
Sbjct: 125 NNQDGTTRLQVQDLVMDLLKQNVSRRGLAVLLQPREYKLLEYLMRHAGQVVTRTMLLEHV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +    +P+  +IDV + +LR+K+       + + TV G GY L   A+
Sbjct: 185 WGYNFDPQTNVIDVHVSRLRQKIDKDF-DTSLLLTVRGAGYRLGPEAQ 231


>gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 220

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V   G  + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
 gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family
           [Bacteroides salanitronis DSM 18170]
          Length = 228

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  L   ++  L+ E + V   +  E+ ++L    +++ ++LD+ + +I GF+
Sbjct: 5   RILVVDDEDDLCEILKFNLEMEGYKVDTANSAEEALKL-DLTQYNLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+  K +   P+  ++   +  D + G   GADDYISKPF+  E++ R++A++RR+
Sbjct: 64  MARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRRT 123

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +      +    L +N+  K V ++G  I LT KE++++ LL        ++E  L+
Sbjct: 124 ANLQRKESEELQYKGLVINVPQKKVTIEGEEISLTKKEFEILSLLLQNAGRVFSREDILS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +++       + IDV I +LRKK+         I T  G GY   
Sbjct: 184 KVWNDEVYVLDRTIDVNITRLRKKIGEYGKN---IVTRLGYGYCFE 226


>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 224

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL +ED+KAL  +I  +L  E + V + D G+DG+ L +   +D ++LD+ +  + G 
Sbjct: 1   MLILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIYDLLVLDIMMPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
            ++R LR   I TPV  L+   S+E +V GL +GADDY+ KPF  EEL AR+RA++RR  
Sbjct: 61  SLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           + + +  +  G LS+ ++     V    + LT KEY++++     +   LT++   + ++
Sbjct: 121 KQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               E    ++D+++  LRKKL    G   +I T+   GY+L++  K
Sbjct: 181 GIDSEANYGVVDLYVHYLRKKLGAYEG---FIRTIRNVGYILKKENK 224


>gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 229

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 11/231 (4%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR IL+ +D+  +   + ++L+SE FNV     GED +        D IILD+ +    G
Sbjct: 1   MRNILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIKSG 59

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R  K S P+  L+  S   DK     +G+DD++SKPF+  EL++R++A++RR 
Sbjct: 60  FKACIEIRE-KTSAPILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRRY 118

Query: 120 R-------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                     +   I    L +N  +  V +    I LT  EY+++ L++  ++   + +
Sbjct: 119 YIYKGKEAPESSDSIDINGLKINKTSNEVSIDNEEIILTEIEYRLLLLMASNRSKIFSAQ 178

Query: 173 MFLNHLYDG-RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +++          + V I  LR KL        YI+TVWG+GY + 
Sbjct: 179 NLYESVWNEPYFYTNNNTVMVHIRNLRSKLECDPQNPKYIKTVWGKGYRIE 229


>gi|167622871|ref|YP_001673165.1| two component transcriptional regulator [Shewanella halifaxensis
           HAW-EB4]
 gi|167352893|gb|ABZ75506.1| two component transcriptional regulator, winged helix family
           [Shewanella halifaxensis HAW-EB4]
          Length = 237

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDFLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPSLLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            AQ     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PAQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|159898795|ref|YP_001545042.1| two component transcriptional regulator [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891834|gb|ABX04914.1| two component transcriptional regulator, winged helix family
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 231

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 110/225 (48%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+IED+  +   +   L S  +++   + GEDG+          IILDLGL D+ G 
Sbjct: 5   INVLVIEDEAPIRRFLRASLPSHGYHLIEAENGEDGLLQAAMQRPAIIILDLGLPDLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V + LR    +TP+ +LS     +DK+  L +GADDY++KPF   EL+AR+R  +R   
Sbjct: 65  QVTQRLREW-TNTPIIVLSARGREDDKIAALDAGADDYLTKPFGMGELLARLRVALRHLH 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H     + +   G L V+L  + V V    +HLT  EY ++  L       +T    L 
Sbjct: 124 QHGGEKGEPVFQVGALRVDLVRRQVFVAEQEVHLTPNEYNLLTTLVQHAGKVMTHRQLLR 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E   + V++ +LR KL        Y+ T  G GY L
Sbjct: 184 EVWGPAYTEENHYLRVYMGQLRHKLEADPARPRYLLTEPGVGYRL 228


>gi|86360536|ref|YP_472424.1| two-component response regulator [Rhizobium etli CFN 42]
 gi|86284638|gb|ABC93697.1| two-component response regulator protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CFN 42]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V      E   +       D ++LDLGL D PG +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAESARQSVADDMPDLVVLDLGLPDTPGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQEWRDGGLSVPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V G  + L+ KEY ++ +L       LT +  L  ++
Sbjct: 127 QQGERAIFQTGGLSIDLVKRIVKVDGEELKLSPKEYDILRVLVQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V+I ++R+K+       +YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYIRQIRQKVEKIPDQPHYITTETGVGYRLREP 229


>gi|15891165|ref|NP_356837.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15159516|gb|AAK89622.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 229

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L ++ + V      +  +EL +  + D ++LDLGL D+ G +
Sbjct: 7   RILIVDDEPPIRKLLRVGLSTQGYAVSEAMNAKVAMELVREDKPDLVVLDLGLPDVSGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L   R   ++ PV ILS  +     VR L+ GADDYISKPF   ELVARIR  +R    
Sbjct: 67  LLEKWRSDGLALPVIILSSRTDEAGIVRALELGADDYISKPFGMNELVARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +  TGDLSV+L  + V+V+   + L+ KEY ++ +L       LT    L H++
Sbjct: 127 TQGEKPVFQTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  +V+ + V++ +LR+K+        YI T  G GY L+E
Sbjct: 187 --DELTDVQYLRVYVRQLRQKIEKLPDQPRYILTETGVGYRLQE 228


>gi|254524477|ref|ZP_05136532.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
 gi|219722068|gb|EED40593.1| two-component system regulatory protein [Stenotrophomonas sp.
           SKA14]
          Length = 229

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQNFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I++++ +LRKKL   AG    I TV G GY+L  +
Sbjct: 181 FDDEAGPNAIELYVGRLRKKL---AGAPLRITTVRGVGYLLEAS 221


>gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 233

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   S   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A G    + TV G G+VLR
Sbjct: 203 FIGYLRRKLE-AGGAPRLLHTVRGVGFVLR 231


>gi|77459741|ref|YP_349248.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77383744|gb|ABA75257.1| putative two-component response regulator transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 227

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 120/226 (53%), Gaps = 3/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L S   +V   D G +G++      +D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELSSHGLDVDWVDNGREGLDRAVSGNYDLITLDRMLPELDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  LR   ++TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR  S
Sbjct: 63  IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRQNS 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   + +   DL ++L +         + L   EY+++E L       L++ M    ++
Sbjct: 123 NGAQPTTLQVADLQLDLISHEARRAEQVLTLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               +P   +IDV I +LRKK+ +  G    I TV G GYV+ E  
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGNVPLIRTVRGSGYVIAEPV 227


>gi|320531577|ref|ZP_08032524.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320136213|gb|EFW28214.1| transcriptional regulatory protein CutR [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 219

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E  +  ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVEINDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVSDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVIEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P      V I  LR+KL    G    I+TV G GY  
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGYRF 217


>gi|302187377|ref|ZP_07264050.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. syringae 642]
          Length = 230

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +ARIRA++R+  G+
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSGN 125

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DKPESALRFGPLTVDLAYRRVLLDEQEMALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226


>gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 219

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L+   F V     G          ++  ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKASLALDTTQYALVVLDLGLPRVSGT 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  ELVAR RA++RR++
Sbjct: 61  ELLKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI   +L+VN  A+TV++   R+ LT +E+ ++  L        ++      LY 
Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL         I+TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKLGAN-----LIKTVRNIGYVMEKE 219


>gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
          Length = 233

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 73/210 (34%), Positives = 115/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F+V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFDVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   S   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL  A G    + TV G G+VLR
Sbjct: 203 FIGYLRRKLE-AGGAPRLLHTVRGVGFVLR 231


>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
 gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
 gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
 gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
 gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
           aeruginosa 39016]
          Length = 227

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  ALCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V+  G  + L     +++ +L  +    + ++     ++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVKRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D P+   +   + +LR+ + +       + TV G GY L E  
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFSVALLHTVHGVGYRLAEEP 224


>gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396]
 gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Hahella chejuensis KCTC
           2396]
          Length = 244

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+ A+   +  +     ++V     G+DG+       +D I+LD+ L    G+E
Sbjct: 16  RILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVMLPGKNGYE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +  A+R+     P+ +L+  SS ED + GL  GADDY++KPF+  +LV R++A++RRSR 
Sbjct: 76  ICEAVRLKDRDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRSRS 135

Query: 122 HAQSLIVT---GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +         G L ++    + + +G  +  T +E  +++ L       +++E  LN +
Sbjct: 136 ASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLNKV 195

Query: 179 YDG--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +      + E + +D+ I KLR+K+         + TV G GY L
Sbjct: 196 WGYARDLDIETRTVDIHIAKLRRKIEADPKQPQRLVTVRGGGYRL 240


>gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
 gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787]
          Length = 226

 Score =  247 bits (633), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILLIEDD+ +A SI+  L+ E F + V  +    +EL K  +F  +ILD+ L D  GF
Sbjct: 2   IRILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTLPDGNGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   ++  K   PV  L+ +   E+ V+G + GAD+YI+KPF   EL++RIR ++R + 
Sbjct: 62  ELFEEIKARK-ELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTG 120

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++   I    + +NL+   V     RI LT  EY+++ L    K   LT+   L+ +
Sbjct: 121 ILEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGI 180

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +D   +      + V+I +LR+K+         I+TV G GY 
Sbjct: 181 WDESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGYK 223


>gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
 gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum PSI07]
          Length = 232

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 7   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 228


>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
          Length = 225

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     + V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
 gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
          Length = 224

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++++ + I+  L+   + V +   G +GIE  +  + D ++LDL L  I GF V
Sbjct: 5   ILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLMLPKIDGFAV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
              LR      P+ +L+ +   + +++G  + ADDYI+KPF+   ++  I A++RR+   
Sbjct: 65  CEILRKES-RVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRRAEQG 123

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                ++I   +++V+ D+ TV V    + LT +E+++++LL   +   +++E  L+ ++
Sbjct: 124 GAAPNTVIRYKEITVDTDSLTVLVGTGSVSLTTREFEILKLLLENQGRVVSRERLLDTVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + KI++  I  +RKKL        YIET+ G GY + + 
Sbjct: 184 GYDYIGDEKIVNTHIKNIRKKLGVD-----YIETMRGAGYKIEKE 223


>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
 gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
           16841]
          Length = 232

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 130/227 (57%), Gaps = 4/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           MR+LL ED++ L+ ++ ++LK  N++V     G + ++  +    +D +ILD+ +  + G
Sbjct: 5   MRLLLAEDEEDLSRALVMVLKHNNYSVDAVYDGAEALDYLENGGNYDGVILDIMMPKMDG 64

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             VL+ +R    S PV +L+  + I+D+V GL SGADDY+ KPF+ +EL+ARIRA+ RR 
Sbjct: 65  ITVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMTRRQ 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                +++  GD+++N     +    +   I L GKEYQM+E+L       +  ++F++ 
Sbjct: 125 TDTTDNVLTFGDIALNRSTYQLTGPENPEGIRLAGKEYQMLEMLMSNPGQVICPDLFMDK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    E E  ++ V+I  LRKKL++       I    G GY L ++
Sbjct: 185 IWGYDSEAEQNVVWVYISYLRKKLTSIGSQVK-IRAARGLGYSLEKD 230


>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
 gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
          Length = 232

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 12/227 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L+   F V     G   +          I+LD+ + ++ G  V
Sbjct: 7   VLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIMMPELDGLAV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+  LS      D++ GL+ G DDY++KPF+  ELVAR++A++RR+R  
Sbjct: 67  CREVRRKH-ELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRARPA 125

Query: 123 AQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      +   G L ++ +      Q   + LT  E+Q++  L        T++  
Sbjct: 126 PAPEVEAPAARMQSRGPLRMDAERWRAWWQDTEVVLTVTEFQLLATLLRVPGKVFTRDEL 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +N +YD       + ID  + ++R+K ++A G  + IETV G GY L
Sbjct: 186 MNRVYD-DVVVSDRTIDSHVRRVRQKFASAGG--DVIETVHGLGYRL 229


>gi|73541975|ref|YP_296495.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
 gi|72119388|gb|AAZ61651.1| Response regulator receiver:Transcriptional regulatory protein,
           C-terminal [Ralstonia eutropha JMP134]
          Length = 231

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +   +   L++E   V   D  + G+      + D +ILDLGL D  G ++
Sbjct: 9   VLLVEDEPHIRRFVRAALQAEGCTVREADSLKRGLIEAGTRQPDLVILDLGLPDGDGVDL 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +R +R      PV +LS  S+ EDK+  L +GADDY++KPF   ELVAR+R ++RR   S
Sbjct: 69  IREVRTW-TEVPVLVLSARSAEEDKIGALDAGADDYLTKPFGVGELVARLRVLLRRHARS 127

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             H  + I  G++ V+L  + V   G  +HLT  EY+++ +L   +   +T    L  ++
Sbjct: 128 NPHGSAQIAFGEVQVDLANRMVTRAGEPVHLTPIEYRLLSVLIAHRGKVMTHRELLREVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + + V++  LR KL        ++ T  G GY  
Sbjct: 188 GPSHSESSQYLRVYMGHLRHKLEADPAQPAHLLTEVGVGYRF 229


>gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica
           WH47]
          Length = 239

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 11/230 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ EDD+    ++E +L +E ++V     G    ++ +   FD + LD+ +    GF+
Sbjct: 3   RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKNFDLVCLDVMMPMKSGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR     TPV  ++      DKV GL+ GADDYISKPF   E++AR++A++RR + 
Sbjct: 63  VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRRCQP 122

Query: 122 HAQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                               DL V             I LT +E Q++ LL       + 
Sbjct: 123 EPSQTPSVKDPTTHVAFNMDDLQVTPAKLRATRGETTIELTARELQILILLHDADGDVVH 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +     P  + +D  + +LRK++         I+TV+G GY 
Sbjct: 183 RQTLFQECWGHNRVPNSRTVDQTVSQLRKRIEIDPKHPRIIQTVYGIGYR 232


>gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 245

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
           RIL+++D++ +   +   L +  ++V+V   G + +E+ K ++ D I+LDL +   + G 
Sbjct: 7   RILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V   +R      P+ +LS MS    KVR L  GADDY++KPF  EEL+AR+RA +RRS+
Sbjct: 67  DVCVEVRHRGQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLRRSQ 126

Query: 121 GHAQSLIVT---------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +    I           G L ++L  + V+   + + LT  E+++++ L L     LT 
Sbjct: 127 SNEGEEIQQVPELLISEDGYLYMDLARRLVKAGNNEVRLTPTEFELLKQLMLCAGKVLTH 186

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              L  ++      E   + V++ +LR K+        YI T  G GYV R   +
Sbjct: 187 RALLRAVWGPEYGEEADYLRVYVRQLRLKVEAKPSHPRYIITEPGIGYVFRGQVE 241


>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
          Length = 225

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDTEQ 225


>gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing
           protein and winged-helix DNA-binding domain-containing
           protein [Saccharomonospora viridis DSM 43017]
 gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein
           [Saccharomonospora viridis DSM 43017]
          Length = 229

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 5/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L+   + V +   G   +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVARRLRSVGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAG 120

Query: 121 GHAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               S    ++   DL++N + + V      I LT  E+ ++EL        L +   L 
Sbjct: 121 QEGASGDTDVLTFADLTLNPNTREVTRGDRSISLTRTEFSLLELFMTYPKHVLARSRILE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++          ++V++  LR+K + A G    I TV G GYVLRE   
Sbjct: 181 EVWGYDFPTSGNALEVYVGYLRRK-TEAGGEPRLIHTVRGVGYVLRETPP 229


>gi|167618487|ref|ZP_02387118.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           Bt4]
 gi|257139729|ref|ZP_05587991.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           E264]
          Length = 232

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L +++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRNVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 229


>gi|157960706|ref|YP_001500740.1| two component transcriptional regulator [Shewanella pealeana ATCC
           700345]
 gi|157845706|gb|ABV86205.1| two component transcriptional regulator, winged helix family
           [Shewanella pealeana ATCC 700345]
          Length = 237

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDFLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQAK 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            AQ     +  G LS++   + + +    + LT  E++++ LL+ +    ++++    +L
Sbjct: 128 PAQVESHCLSFGKLSIDPHTQAIRLGETEVDLTSHEFELLWLLASQAGQVMSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
 gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316]
          Length = 219

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F+V     G+ G        +DA++LDL L +I G 
Sbjct: 1   MRILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LRA R +  S PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A+VRRS 
Sbjct: 61  EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRRSH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +S +  G + ++  +    + G  + L  KE+ ++ELL       L ++     LY+
Sbjct: 121 GQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDDVSSNAVEVHVHHLRRKL-----GSEFIRTVHGIGYTL 216


>gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii
           SDF]
 gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates
           and phosphorylates sensor PhoR [Acinetobacter baumannii]
          Length = 236

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     +  I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGVDRFVQTVRGTGYRFSTRA 231


>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
           [Lactobacillus buchneri NRRL B-30929]
 gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
           [Lactobacillus buchneri NRRL B-30929]
          Length = 231

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/229 (35%), Positives = 125/229 (54%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY--EFDAIILDLGLTDIPGF 60
           ILL+ED++AL+  +   LK E++ V +   G + +++        D IILD  L  + G 
Sbjct: 5   ILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV +++    + DKV GL SGADDYI+KPF  EEL+ARIR ++R   
Sbjct: 65  EVLRRIR-KNDDIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHES 123

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            H Q        DL++N  ++ V      I LT +EY+++  L      TLT++  L+ +
Sbjct: 124 HHHQQSELYTVEDLTLNTKSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELLDAV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +    E +  ++DV+I  LR K+ +    K  I TV G GYV+  N ++
Sbjct: 184 WGVDFEGQPNVVDVYIRYLRNKV-DRGYSKQLIHTVRGVGYVMSGNYQE 231


>gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 221

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRKKLQ---GSSVEIRTARGMGYQI 218


>gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 225

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 115/226 (50%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD-IPGF 60
            +L++EDD A+A  + +    E   V V   GED +          +ILDL L   + G 
Sbjct: 4   HVLVVEDDPAIADLLCVYFAKEEGEVRVVSNGEDALSAFDA-SVTLVILDLNLPGRLDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RA+R  + + P+ +LS   +  D+V GL+ GADDY++KPF+  EL+AR+RAI RR  
Sbjct: 63  EVARAIR-HRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVE 121

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +  S   +    +  +  A+ V   G  + LT +E+ ++        T LT+   L+ +
Sbjct: 122 ANPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      + + +DV + +LRKKL    GG   I TVWG GY     
Sbjct: 182 WGPEWYGDDRTVDVHVLQLRKKL----GGAIAISTVWGVGYRFDPE 223


>gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Pelagibaca bermudensis HTCC2601]
 gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseovarius sp. HTCC2601]
          Length = 219

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   + ++  +V      +   +      +D I+LDL L D  G 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGQSVDWVTRLDAARDAMAATSYDLILLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR     TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  GFLKGLRTRGDVTPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVARRYS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   ++  G L ++L A++V   G  + LT +E+ + E    R    L+K      LY 
Sbjct: 121 GNPNPILTHGPLDIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V + +LRKKL +A      IET  G GY L
Sbjct: 181 FDAEVESNTIEVHVSRLRKKLGSAT-----IETERGMGYRL 216


>gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
 gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH]
          Length = 247

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 223


>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
          Length = 233

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 113/221 (51%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +DD  +   +   L+ E + V     G +  E  +    +  ++D+ + +  G++
Sbjct: 11  RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +L+    ++DK  G ++G DDY++KPF  +EL+ RI+A++RR + 
Sbjct: 71  LCREIRED-YDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQR 129

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +  +IV    +++  +  V   G  + L  KE++++  L        T+E  +  ++  
Sbjct: 130 VSADIIVLNGTAIDRKSYEVRSDGQTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWGP 189

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +DV I +LR++ ++ A     I+TV G GY L 
Sbjct: 190 DFAGDDRTVDVHIKRLRRRFADRAEDF-VIQTVRGVGYKLE 229


>gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
 gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family
           [Halanaerobium sp. 'sapolanicus']
          Length = 229

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 89/228 (39%), Positives = 136/228 (59%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A  +EL L+ E + V   D G DGI   K  ++D ++LDL L  + G E
Sbjct: 4   KILIIEDDAQIARFVELELEHEGYQVKKFDNGYDGINALKEDDYDLLLLDLMLPGLDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+ +L+  S +EDKV GL +GADDY++KPF  EEL+ARIRA++RR +G
Sbjct: 64  VCNKIREFS-DLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDKG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + +++   D+ VNLDA  V+  G +I LT KEY ++  L   +   ++++  LN+++
Sbjct: 123 TIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 E  I+DV+I  LR K+ +    +  I TV G GYV+R +  D
Sbjct: 183 GYNYTGETNIVDVYIRYLRSKI-DEPFEEKLIHTVRGVGYVMRSDQDD 229


>gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
 gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter
           K84]
          Length = 241

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 11/234 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I +++D   + + +   L+ + + V V D G     + +    D ++LD+ +    G  
Sbjct: 6   HIAVVDDHADIRNLVGQYLEQQGYRVSVADSGVALRRILERSAVDLVVLDVMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR   +  P+  L+ M+   D++ GL+ GADDY+ KPFN  EL+ARIRA++RR+  
Sbjct: 66  VCRHLRAT-MDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIRAVLRRANS 124

Query: 122 HAQSL---------IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
             Q           +  G   VN+  + +    G  I L+  E++++ +   R    L++
Sbjct: 125 VPQQQRETLKKAKVVRVGHWRVNMGRQELSGDDGVGIPLSTAEFRLLRVFLERPGLVLSR 184

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E  L+       +   + ID  + +LRKK+       + I+T WG GY L  + 
Sbjct: 185 EQLLDLTVGKTADIFDRSIDNQVSRLRKKIEPDPKNPSVIKTHWGGGYSLSVDV 238


>gi|198283804|ref|YP_002220125.1| winged helix family two component transcriptional regulator
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665314|ref|YP_002426436.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198248325|gb|ACH83918.1| two component transcriptional regulator, winged helix family
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517527|gb|ACK78113.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 220

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +  +I + L+   + V     GE  +      E  AI LDLGL  + G 
Sbjct: 1   MRILLVEDDRMIGEAISVALRDAAYAVDWVRDGETALRAIANQEHQAIFLDLGLPKLDGC 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R    S P+ I+S   ++ D+V GL  GADDY+ KPF   EL+AR+RAI+RR  
Sbjct: 61  TLLQRVRAGGNSLPIIIISARDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G L ++L   T ++    + LT KE+ +++ L LR  + L++      LY 
Sbjct: 121 GQGSPVLGNGSLQLDLSTHTAQIGELSVLLTNKEFALLQALLLRPGSILSRAQLEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +  E   ID  I  LRKKL     G   I  V G G+++
Sbjct: 181 WDEGVESNSIDFLIHGLRKKL-----GAKVIRNVRGAGWMI 216


>gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC
           BAA-613]
          Length = 225

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +IEDD+ + + +++ L+   +     +  E+G+   +  + D +I D  L  + G E
Sbjct: 3   RIYIIEDDENIMNLLKIALEGFGYAAEGFETAEEGLARMREEKPDLVIFDWMLPGMDGTE 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ +R  +     P+ +L+      DKV GL  GADDY+ KPF   EL ARIR+++RR+
Sbjct: 63  AIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRRT 122

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +      ++   D+ VN   + V   G  + LT KE++++  L   ++  +T++  LN +
Sbjct: 123 KREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNRI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    + E + +D+ I  LR+KL    G    I+TV G GY + 
Sbjct: 183 WGYEYDGETRTLDMHIRTLRQKLGEEGGA--CIKTVRGVGYRMV 224


>gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans
           PD1222]
 gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family
           [Paracoccus denitrificans PD1222]
          Length = 229

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 121/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A    ++  L++E F+V + + G++ + L    + D I+LD  L ++ G E+
Sbjct: 8   VLVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWMLPNVSGIEI 67

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R ++    +   P+ +LS  S   D+VRGL++GADDY+ KP++  EL+AR+R  +RR+R
Sbjct: 68  CRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARLRTQLRRTR 127

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +   D+ ++     V   G  +HL   E++++  L  +     T+E  L+ ++
Sbjct: 128 PASMGERLSFADIILDAGEHRVFRAGQPVHLGPTEFRLLSTLMEKPGRVWTREQLLDRVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 + + IDV + +LRK L    G  N + TV G GY L
Sbjct: 188 GRDIYVDTRTIDVHVGRLRKALMANGGN-NPVRTVRGTGYSL 228


>gi|284038331|ref|YP_003388261.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283817624|gb|ADB39462.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 223

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IED++ LA  I+  L+       +T  G +G++      +D ++LDL L    GF
Sbjct: 1   MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR   ++ PV ILS +S  E  V+GL  GA DY+ KPF+  EL+ARIR + RR+ 
Sbjct: 61  EVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL + L +  V      + LT +E+ ++ELL  R    +TK      ++ 
Sbjct: 121 MGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLELLMRRAGQLVTKNEIAEKVWA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +    +I+V I +LRKK+ +A G    IET+ GRGY L+
Sbjct: 181 MDFDMGSNVIEVHIYQLRKKI-DATGIPGLIETLIGRGYRLK 221


>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
           [Desulfohalobium retbaense DSM 5692]
          Length = 236

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 122/225 (54%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++LA  ++  L+ E + V     G + + L    EFD IILDL L  + G+E
Sbjct: 8   RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V R +R      P+ +L+  ++ +D+++GL++GADDY++KPF+ +EL+ R++ +++R + 
Sbjct: 68  VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQW 127

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  + ++  G+ +VN      + +     LT +E  +++ L   +   ++++  L 
Sbjct: 128 YQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELLE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++      + + +D FI +LRK          +I +V   GY  
Sbjct: 188 NVWQVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQF 232


>gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42]
 gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family
           [Acidovorax sp. JS42]
          Length = 223

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L   +   + +    V     G     L +  +FDA++LDLGL  + G 
Sbjct: 1   MRILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGLPVLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A  + PV IL+  ++  +KV G+ +GADDY++KPF+ EEL+AR+RA++RR  
Sbjct: 61  SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            HA +    G + ++     V V G  + LT  E++++ LL  RK   L++     H+Y 
Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + +   I+VF+ +LRKKL         IETV G GY L E
Sbjct: 181 HDSDRDSNTIEVFVGRLRKKL-----PPGSIETVRGLGYRLAE 218


>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
 gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
           NK-01]
          Length = 227

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + F+V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + LR    S  P+ +L+   +++D+++GL +GADDY+ KPF   ELVARI AI+RRS
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  +  +   DLS +LD   V   G  + L     +++ +L  R    + +E     L+
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQSLKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D P+   +   + +LR+ L         + T+ G GY L E+A
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVLDKPFPTP-LLHTIHGVGYRLAESA 224


>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
 gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
           [Ruminococcus albus 8]
          Length = 223

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D+  +   ++   +   + V+    G + I+     + D I+LD+ + +  G E
Sbjct: 3   KILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQA-SRQPDIILLDINMPEADGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+  L+      DKV G  +G DDYI KPF+ EEL ARI A +RR   
Sbjct: 62  VCRRIR-DYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRRENR 120

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  + +++ G LSV+    TV   G  I+L  KE+Q++ELLS       +KE     ++
Sbjct: 121 SAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E +  ++   I +LR KLS   G  ++IETVWG GY   
Sbjct: 181 SYDAEGDSSVVAEHIRRLRSKLSKY-GEGSHIETVWGMGYKWV 222


>gi|237753132|ref|ZP_04583612.1| DNA-binding response regulator [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375399|gb|EEO25490.1| DNA-binding response regulator [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 222

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           +IL++EDD  +   ++  L+     V  TD     IE  K  + F   +LD+ L ++ G 
Sbjct: 3   KILIVEDDLEMQKLLQDYLQQSGMEVITTDSPNTAIEWIKQQKGFHLAVLDIMLPEMDGL 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   +R      P+ + S    I  K+ G ++GADDY++K +   ELVARI A+++R  
Sbjct: 63  ELCERIREIS-DIPIIMSSARGDISSKMLGFKNGADDYLAKSYEPLELVARINALLKRYT 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 I   DL ++   + V+V+G  I LT  E++++ LL L K    ++      +  
Sbjct: 122 KTQS--ITYKDLEIDSTKRKVKVEGIAIELTPAEFEILNLLFLHKGKPFSRNSLSQAIAS 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +  ++ ID  I  LR KL + A    YI++VWG GY  
Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKTPKYIQSVWGIGYKF 220


>gi|224588150|gb|ACN58774.1| DNA-binding response regulator [uncultured bacterium BLR8]
          Length = 239

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 58/223 (26%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L    ++ +    G++  +       + ++LDL L    G E
Sbjct: 16  RILIVEDEDKIADVLRDYLVQAGYDTHRLARGDEVEDWVMANGVELVLLDLMLPGKSGLE 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  + +++      D++ GL+ GADDYI KPF+  E+VAR++A++RRS+G
Sbjct: 76  VCRGLRTFSNAA-IIMVTAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSQG 134

Query: 122 H-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A +    G L ++       + G  + LT  E++++ +L+ +     +++  ++ +Y 
Sbjct: 135 AGAAATPRAGGLQLDDSRWKATLDGQDLDLTAVEFKLLSVLASQPGRIFSRDQLMDAMYR 194

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  + +D  + KLR+K++       +I +V+G GY   +
Sbjct: 195 DERIVADRTVDSHVKKLRRKIAEVVPDHEFIHSVYGVGYQYED 237


>gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora
           inyonensis]
          Length = 231

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  +   +   L+     V       DG+        D ++LDLGL D+ G E
Sbjct: 3   RLLLIEDDLTIRTPLVRALRDRGHAVAAASTAMDGLRDALENRPDLVVLDLGLPDLDGRE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +LR LR      PV + +      + VR L +GADDY+ KPF   +L AR+RA++RR   
Sbjct: 63  LLRMLRAVSP-VPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           + G     +V G L V+  A+ V + G  + LT +E+ ++  L+ R    +TK   +  +
Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +        K +DV +  LR+KL   A    Y+ TV G G  L    +
Sbjct: 182 WQIPYGGADKTVDVHLSWLRRKLGENAQQPRYLHTVRGVGVRLAPPEE 229


>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
 gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
          Length = 225

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRW 220


>gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
 gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein
           [Burkholderia multivorans ATCC 17616]
          Length = 253

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 15/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD A+   +   L   +  V V   G+D  +  + +  D +ILDL +    G +
Sbjct: 8   HVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGVQ 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ I+SG     D+V  L+ GADDY++KPF+  EL+AR+RA++RR+  
Sbjct: 68  IARELRTRS-NLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126

Query: 122 HAQSL--------IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
            A +                +N+  + +    G  + LT  E+ ++          L+++
Sbjct: 127 TAPATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRD 186

Query: 173 MFLN--HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L    LY   D+   + IDV I +LR+K+        +I TV G GYVL
Sbjct: 187 QLLESSRLY---DDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVL 234


>gi|294012529|ref|YP_003545989.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
 gi|292675859|dbj|BAI97377.1| two-component system phosphate regulon response regulator OmpR
           [Sphingobium japonicum UT26S]
          Length = 238

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 9/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +   +  +L  E F         +  +L +    D  +LD+ L    GF +
Sbjct: 6   IAVVEDDREIRALVVDLLNREGFEAVGCRTTLEFDQLNQRRRIDLAVLDVMLPGEDGFSL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR A    PV +++  +   D++ GL+ GADDY+ KPFN  ELVAR+RAI+RR+RG 
Sbjct: 66  CRRLRAAG-DIPVLMVTAKADDVDRIVGLEIGADDYLPKPFNPRELVARVRAILRRTRGQ 124

Query: 123 -------AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  A      G  +++L A++V   +G  + LT  E+ ++          L ++  
Sbjct: 125 HRISPALANERYGFGGWTLDLGARSVVGPEGEEVELTAGEFDLLHCFVTHPQRVLNRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+        P  + IDV + +LR+KL+ A GG   I+TV G GY  
Sbjct: 185 LDWTRGRSAGPFDRAIDVQLSRLRRKLAQAPGGDTVIKTVRGGGYQF 231


>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 235

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+DD  L   ++  L +E F+V     G  G +L    +FD  +LD+ +  + G E
Sbjct: 3   KILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L  +R      PV +L+      D+  GL+ GADDY+ KP    EL ARIRAI+RR++ 
Sbjct: 63  TLGLIR-KSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAKP 121

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S +  GDL++  + + VE+ G+ I+LT  E+ ++E+L+      ++K+    
Sbjct: 122 TQESLQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELAK 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                      + IDV +  +R+K+     G++ I+TV+  GY L
Sbjct: 182 LGMGKPLARFDRSIDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQL 226


>gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
 gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           ruckeri ATCC 29473]
          Length = 226

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 3/223 (1%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +++ED+K +   +   L+SE + V+ ++  + G+      + D IILDLGL D  G   +
Sbjct: 1   MIVEDEKEIRRFVRTALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLTYI 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--RG 121
           R LR    + P+ +LS  +S EDKV  L +GADDY+SKPF   EL+AR+R  +RR    G
Sbjct: 61  RDLRQWS-AIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAAG 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   D+SV+L  + V+  G  +HLT  E++++  L       +T+   LN ++  
Sbjct: 120 QENPIVSFSDVSVDLINRQVKRAGEELHLTPIEFRLLTALLANAGKVITQRQLLNQVWGP 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   + +++  LR+KL +      ++ T  G GY    +
Sbjct: 180 NYVEHNHYLRIYMGHLRQKLEDDPTRPKHLLTETGVGYRFIPD 222


>gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
 gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3]
          Length = 219

 Score =  247 bits (633), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL +      +I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216


>gi|261820326|ref|YP_003258432.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
 gi|261604339|gb|ACX86825.1| two component transcriptional regulator, winged helix family
           [Pectobacterium wasabiae WPP163]
          Length = 226

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL++DD  L   +   L +E F       G++GI+     ++ A+ILD+ L D+ G 
Sbjct: 1   MNILLVDDDVELGDMLCEYLNAEGFLTSRVLTGKEGIDGAMSGDYTAMILDVMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQIRKT-EQLPVIMLTARGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYD 119

Query: 121 GHAQSLIVT-----GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +         G+L ++   +    +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 EQPSTKRDASVAASGELVLHPATRISAWRGKPFDLTASEFNLLELLLRFPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 R E   + +DV I  +R+KL    G    IETV   GY +R
Sbjct: 180 EKCLGRRREAYDRSVDVHISNIRQKLGALPGNTMTIETVRSVGYRIR 226


>gi|146342521|ref|YP_001207569.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195327|emb|CAL79352.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 255

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 115/232 (49%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL +EDD+ +A  +  +L+   F            ++ +  + D I+LDL L D  G  
Sbjct: 20  RILCVEDDREIAALLTELLQEHGFAPRFVASAAAMNDVLQREQVDLIMLDLMLPDEDGMS 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR    + P+ +++      D++ GL+ GADDY+ KPFN  ELVARIRA++RRS+ 
Sbjct: 80  ICRRLRQIS-AVPIIMVTAKGEDIDRILGLELGADDYVVKPFNPRELVARIRALLRRSQL 138

Query: 122 HA------QSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           H       Q+ ++     +    +T+      +I LT  E+ ++          L++E  
Sbjct: 139 HPAVIAARQAPMMFDGWRIEPATRTLFDPDRVKITLTSAEFDILLAFCRNAGRVLSREQL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   + G+  P  + IDV I ++R+K+   A   + I+TV   GYV     +
Sbjct: 199 IELAHGGQAGPVERSIDVHISRIRQKIEPGARSWSMIKTVRLGGYVFTPRVE 250


>gi|330808333|ref|YP_004352795.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376441|gb|AEA67791.1| two-component response regulator [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 232

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   LLVIDDEPQIRKFLRISLSSQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR  R    + PV +LS  +S   KV  L +GA+DY++KPF  +E +AR+RA++R++   
Sbjct: 67  LREFRQWS-TVPVLVLSVRASEAQKVEALDNGANDYVTKPFGIQEFLARVRALLRQAPAG 125

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L+V+L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EPQEAALKFGPLTVDLAYRRVLLDDTEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226


>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 228

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +    P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  TKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVSGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 VPELPQELVYADLRIDLQRKDVERNNVPIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRNF-EPKLIHTKAGMGFILTD 226


>gi|119775932|ref|YP_928672.1| response regulator receiver protein [Shewanella amazonensis SB2B]
 gi|119768432|gb|ABM01003.1| response regulator receiver protein [Shewanella amazonensis SB2B]
          Length = 236

 Score =  247 bits (632), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 124/228 (54%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LK+   +V +   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 8   RVLLVEDDVRLANLIVDYLKANGMHVELERRGDTVLTRLLNYKPDIILLDIMLPGMDGLT 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  L     + P+ ++S + S ED+++GL+ GADDY+ KP +   LVARI  ++RR   
Sbjct: 68  LIEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLVARINNLLRRHSA 126

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++   +T+ +   ++ LT  E++++ LL+ +    L+++    +L
Sbjct: 127 PPKQESHCLNFGKLSIDPHTQTIRLNDQQVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A 
Sbjct: 187 LNIDFDGKDRKIDVRISRLRKKLDDNLETPFRIKTVWGQGYLFAPEAW 234


>gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
 gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family
           [Bacteroides coprosuis DSM 18011]
          Length = 226

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 85/225 (37%), Positives = 135/225 (60%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+ED+  ++  +   L+  NF+V +   G +  +L    E+  IILD+ L DI G 
Sbjct: 1   MDLLLVEDNSRISEFMVKGLQENNFSVTLAVNGVEARQLITSKEWSLIILDIMLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R  KI+TP+ ++S +   EDK++ L  GADDY+SKPF+  ELVARI A+ RRSR
Sbjct: 61  ELLQYTRFKKINTPILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALTRRSR 120

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               HA +L+    + +N+    V  +G  IHLT +E+++++LL    +  L++   +N 
Sbjct: 121 SENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTEIINS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    E    I+DV+I  LR K+ + +  K  IETV GRGY++R
Sbjct: 181 VWGLDYESNTNIVDVYISYLRNKIEDKSKAK-IIETVQGRGYIIR 224


>gi|262044958|ref|ZP_06018000.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037685|gb|EEW38914.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+E ++++A ++  ML+ E F V V   G   +E       D  ILD+GL DI GFE
Sbjct: 5   RIWLVEYEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R L     + PV  L+  S   DK+ GL+ GADDYI+KPF+  E+ AR+R ++RR + 
Sbjct: 65  LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQK 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  G+  ++  A  +   G  ++LT  E+ +++ L        +++  +  ++
Sbjct: 125 FAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E   + +D  I  LR KL      K  I T  G GY L
Sbjct: 185 SDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226


>gi|166367563|ref|YP_001659836.1| OmpR family two-component response regulator [Microcystis
           aeruginosa NIES-843]
 gi|166089936|dbj|BAG04644.1| two-component response regulator OmpR subfamily [Microcystis
           aeruginosa NIES-843]
          Length = 236

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 10/222 (4%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
           AH I+  L+ E+F  ++   G  G+EL    + + +ILDL L ++ G E+   +R    +
Sbjct: 13  AHLIQQTLERESFTCHLAYNGRVGLELFYQKQPELVILDLMLPELDGLELCARIRQKPGT 72

Query: 73  TP--VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RGHAQSLI 127
               + +L+      D++ GL +GADDY+ KPF+  EL AR+RA++RRS       Q L 
Sbjct: 73  KDPYILMLTARGEEIDRIIGLSTGADDYMVKPFSPRELTARVRALLRRSLRHDSQPQQLH 132

Query: 128 VTGDLSVNLDAKTVEVQ-----GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +    ++LD  +   +        + LT  E+ ++       N   ++   +++L+   
Sbjct: 133 RSRHFLIDLDQHSALRKLEGMPEETLDLTTLEFNLLATFVSYPNRVWSRTQLIDNLWGND 192

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  I +LRKK+        +I+TV G GY   ++
Sbjct: 193 FFGDERVVDTHIRRLRKKVEPDPANPIFIKTVVGVGYKFEDD 234


>gi|34496216|ref|NP_900431.1| two-component response regulator [Chromobacterium violaceum ATCC
           12472]
 gi|34102070|gb|AAQ58437.1| probable two-component response regulator [Chromobacterium
           violaceum ATCC 12472]
          Length = 237

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD  LA  I   L    + V +   G+           D ++LD+ L    GF+
Sbjct: 4   HILIVEDDARLAELIAAYLTKHGYQVSLHGRGDTAPAFILETRPDLVVLDVMLPGKEGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R       + +++      D++ GL+ GADDY++KP     L+ARIRA++RRS G
Sbjct: 64  VCRDVRP-HYGGRILMMTARDEDVDEILGLELGADDYLAKPVEPRRLLARIRALLRRSGG 122

Query: 122 HAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             Q           I  G  S++   +   +   +I LT  E+ ++ LL+      L+++
Sbjct: 123 ARQEGGGVAVENDGITFGQFSISQATREALLGDEQIELTTAEFDLLWLLATHAGQVLSRD 182

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ L     +   + ID  I +LR+KL +       I+TV G+GY+ 
Sbjct: 183 DIMSELRGIGFDGLDRSIDARISRLRRKLGDNPDAPARIKTVRGKGYLF 231


>gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens
           FD-1]
          Length = 224

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 3/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ LA  +   L SE +     +   D + L +   +D I+LD+ L D  G+ 
Sbjct: 3   RILLVEDDEQLAKILTRFLNSEGYATDYANGQRDALRLFEENAYDCILLDISLKDGNGYS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A++     TPV  ++  +     V G + GADDYI KPF   EL+AR++ ++RR++ 
Sbjct: 63  VCAAVK-KNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               LI  G+++++     +   GH + ++  EY+M+ +    KN  L+++     L+  
Sbjct: 122 -TSPLINCGNVTIDPIKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSL 180

Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +      + V+I +LR+K+ +       I TV G GY 
Sbjct: 181 TKEFVSDNTLSVYIRRLREKIEDDPQDPKIIITVRGLGYK 220


>gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 225

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+  L H +   L      V      E+ +     +  D  ++DLGL  I G 
Sbjct: 1   MKLLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++R LR    + P+ IL+   + +DKV GL +GADDY+ K F  EEL AR+ A +RRS 
Sbjct: 61  DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  QS I+ G L ++L+ K   +    + LT  EY+++E L L     + KE  +  LY 
Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             DE +  +I+V + +LR+KL +    K  IETV G GY+  E
Sbjct: 181 DDDERDPNVIEVLVGRLRRKLDSNVAFKP-IETVRGMGYLFNE 222


>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
           [Cellulophaga lytica DSM 7489]
 gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
           [Cellulophaga lytica DSM 7489]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D+  +   +   L SE + V+    G + +   K      IILD+ + ++ G 
Sbjct: 6   IKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMPEMDGI 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R      +T +  L+       +V G  +GADD I+KP   + LV++++A++RR
Sbjct: 66  EACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALLRR 125

Query: 119 SR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +       + ++  G++ +N +   V   G  I L  KE++++ LL+ + N    +E+ 
Sbjct: 126 LKEDNAAEQEDIVKVGNIVINREEYKVINDGQEIVLPRKEFELLALLTSKPNKVYKREVI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++        + IDV I KLR+K+ +      + +TV G GY   
Sbjct: 186 LDKVWGNEVVVGGRTIDVHIRKLREKIGDD-----HFKTVKGVGYKFV 228


>gi|318080665|ref|ZP_07987997.1| two component system response regulator [Streptomyces sp. SA3_actF]
          Length = 253

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G  
Sbjct: 20  RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+  
Sbjct: 80  VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 139

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ ++
Sbjct: 140 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 199

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +++++I  LR+K+    G +  I T  G GY+++ 
Sbjct: 200 SYDFGGQANVVELYISYLRRKI--DRGREPMIHTRRGAGYLIKP 241


>gi|227494938|ref|ZP_03925254.1| response regulator [Actinomyces coleocanis DSM 15436]
 gi|226831390|gb|EEH63773.1| response regulator [Actinomyces coleocanis DSM 15436]
          Length = 226

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++L+EDD A+A  +   L  E ++V   D G   +   +    D  ILDLGL D+ G +V
Sbjct: 4   VILVEDDSAIAEPLARALSREGYDVRSHDTGAAALTEVEAA--DLFILDLGLPDMDGLDV 61

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
            R +R    +TP+ IL+  +   D V GL +GADDY++KPF   EL+AR+RA++RR    
Sbjct: 62  ARHVRKLGKTTPILILTARADEIDMVVGLDAGADDYVTKPFRLAELLARVRALLRRIGSE 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +V  D+ V++ A    V    + LT KE+ ++ +L       + +++ +  ++  
Sbjct: 122 EPEEDLVAQDVRVSVTAHRAFVNERELQLTAKEFDLLRVLVREAGNVVERDLLMREVWGS 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 K +D+ +  LR+KL + A   +YI TV G G+   + 
Sbjct: 182 DPTGSTKTLDMHVSWLRRKLGDDAAHPHYITTVRGMGFRFEKE 224


>gi|330875625|gb|EGH09774.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 230

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/221 (29%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGS 125

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +S +  G L+V+L  + V +    + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 DRPESALKFGPLTVDLAYRRVLLDDQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|226314802|ref|YP_002774698.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226097752|dbj|BAH46194.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 231

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 3/231 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL+EDD  L   I   L  E   V      E  +E  +   +D  ILD  +    G 
Sbjct: 1   MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           E+   +R +   TP+ +L+   +I+D+V GL  GADDY+ KPF  EEL ARI A+ RR  
Sbjct: 61  ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              H +       ++++     V  +G  + LT KE+Q+++         LT++  +N++
Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +          +D  I  LRKK+      K  I  V G GY L    ++E+
Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHK-LIHNVRGVGYRLYVAGENES 230


>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
 gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 115/228 (50%), Gaps = 11/228 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL++D++ +   +   L  E + +     G++ + + K      II+D+ + ++ G 
Sbjct: 6   IKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMPEMDGM 65

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E    +R       T +  L+  S    +V G  +GADDYI+KP   + LV++++A++RR
Sbjct: 66  EACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQALLRR 125

Query: 119 SR----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +      + + +  G++ +N +   +  +G  I L  KE+++  LL+ +     T+E  
Sbjct: 126 FKDSEGSSSSTTLNVGNIEINREEYKIVKEGVEIILPRKEFELFYLLATKPGKVFTREEI 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L+ ++        + IDV I KLR+K+ +      + +T+ G GY + 
Sbjct: 186 LDKVWGNEVVVGGRTIDVHIRKLREKIGDD-----FFKTIKGVGYKIE 228


>gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
 gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
          Length = 231

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +    +  L    + V V   G + +E+ K    D II D+ +  + G+++
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMDGYDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR  RG
Sbjct: 65  ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G+L +N  +  V+V    + LT K ++++ LL+       +K      ++  
Sbjct: 125 GETEVVSLGNLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223
               +   ++V I  LR++L+  A  +   I+TVWG GY + +
Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASSETPTIKTVWGLGYKIEK 227


>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
 gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
          Length = 223

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 --DSFVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           + + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYKWK 221


>gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 228

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 138/227 (60%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDDK ++ SI+  LK   +++     GE+G+ + +   +D IILD+ L  + G 
Sbjct: 1   MKILVVEDDKLISQSIKNSLKDY-YSIDTALDGEEGLYMAEQNIYDLIILDIMLPSLNGD 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L++LR   +STP+ +L+   S+EDK+ G + GADDYISKPF+ EEL  RI A++RRS 
Sbjct: 60  EILKSLRKNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALLRRSG 119

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G+L +++  + + +   +++L  K + ++E L   K T LTKE   + ++
Sbjct: 120 ALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIFDRVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
               +  + I++V++ KLRK L         I+TV G GY+ + + K
Sbjct: 180 GFESDTAINIVEVYMHKLRKTLVEHGCDGE-IKTVRGIGYMFKSSDK 225


>gi|294670535|ref|ZP_06735415.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307814|gb|EFE49057.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 225

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 118/220 (53%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A +    LK   + V     G   +   +   +D I+LDLGL    G 
Sbjct: 1   MRVLLVEDDAMIAEAAACGLKDSGYAVDWIKNGGQVVSAVQAQPYDLILLDLGLPGCDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR A  S P+ I++    +  ++ GL  GADDYI KPF+  EL AR+RA++RR  
Sbjct: 61  QILAELRAAGCSVPILIVTARDDLHSRLGGLDGGADDYIVKPFDMAELQARMRAVLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G +Q+L   G L+++   + V V G    I L+ KE+ +++ L +R    L++    + +
Sbjct: 121 GQSQALPSNGLLTLDPATRRVRVAGQEGDIMLSNKEFAVLQALLMRPGMILSRTDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           Y   +E E   +D  I  LRKKL     GK +I+ V G G
Sbjct: 181 YGWGEEVESNAVDFLIHALRKKL-----GKEHIQNVRGAG 215


>gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 222

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+EDD+++   +   LKS+ F     +      +  +  +   ++LD+ L +  G  +
Sbjct: 2   IYLVEDDESIRELVIYTLKSQGFEAKGFERPSHFWKALEKEKPALLLLDVMLPEEDGISI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ LR+   +   P+ +L+  SS  D V GL SGADDYI KPF   EL++RIRA++RR+ 
Sbjct: 62  LKKLRMRPDTRKLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLRRTE 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                   TG+L V        V    ++LT KEY+++ LL     T L++   LN ++ 
Sbjct: 122 DDGAEEYRTGNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + E + +DV I  LR+KL +A      +ETV G GY +
Sbjct: 182 YEFDGESRTVDVHIRTLRQKLGSAG---ELVETVRGVGYKI 219


>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 239

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+   F V     G +  +      +  ++LDL L    G E+
Sbjct: 7   ILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLMLPGESGLEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + P+ +L+ M    D++ GL+ GADDY+ KPFN  EL+ARIRA++RRS   
Sbjct: 67  ARWLRGQ-ANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRSSEA 125

Query: 123 AQSLIVTGDLSVNLDAKTVE--------VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            ++ +V    S++    T+E         +G  + LTG EY ++  L  R N  LT++M 
Sbjct: 126 PETRVVGEPRSLHFSGWTLEQARRRLLNPEGTEVPLTGGEYDLLMALLDRANRVLTRDML 185

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + L   +  P  + IDV I +LR+KL +       I+TV G GYVL  + +
Sbjct: 186 FDLLRGRQAGPFDRAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVLASDVE 237


>gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 231

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++ED+  +A  I+  L++++  V V   G +G  L     FD +ILD+ L  + G E
Sbjct: 8   HLLVVEDETKVALFIKKGLETQSLTVTVAADGREGKRLISSERFDLVILDVNLPFVSGLE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+ +L+ + S  DK+ G ++GADDY++KPF+  ELVAR+RA++RRS  
Sbjct: 68  LAEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRRSAP 127

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +Q ++   DL ++   K     G  I LT +E+ +++ L   +   +++      ++
Sbjct: 128 PEESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDIAEQVW 187

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   +    +IDV++  LR K+ +       I TV G GYVL+E
Sbjct: 188 DVGFDTGTNVIDVYVNYLRNKI-DKGEPVKLIHTVVGFGYVLKE 230


>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
 gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
          Length = 235

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 7/226 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR L++ED   L  ++  ML+ E + V     GE G+     +E+D I+LD  L  + GF
Sbjct: 1   MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR  K STPV +L+    + D+V+GL  GADDY+ KPF++ EL+AR+RA++RR+ 
Sbjct: 61  DLLKQLRTKK-STPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAA 119

Query: 121 GHAQSLIVTG-DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G ++SL+  G  +++NL  + V      I LT +EY + E L+L +   + +    +H++
Sbjct: 120 GESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIF 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D  DE    ++DV I  LR+KL         IET  G GY++   A
Sbjct: 180 DENDESLSNLLDVHISNLRRKLGRD-----VIETRRGLGYIIHSQA 220


>gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 234

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD  L+  I    +   F V V   G  G++L     FD I+ D+ L    G E
Sbjct: 3   HILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNHFDLIVTDIVLPKKDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               ++  K   PV +L+ + + +DK+ G  +GADDY++KPF   ELVARI+ +++R   
Sbjct: 63  FCNEIKALKPDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLLKRFSQ 122

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++    + +NL+ KTV      I LT KE+ +++ +       L++      +
Sbjct: 123 QRHQKVLILRYDGIEMNLEQKTVIRDHIPIKLTPKEFNLLKFMLENSERVLSRSEIAEKV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   +     IDV+I  LRKK+         I T  G G++L++N
Sbjct: 183 WETHFDTGTNFIDVYINYLRKKIDKDF-EVKLIHTKAGMGFILKKN 227


>gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
 gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
          Length = 225

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 125/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+K L  +I   L+ + + V     GE   ++     +D IILDL L  + G 
Sbjct: 1   MRILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ +R+    T + ILS    ++DK+ GL  GA+DY+ KPF+ EEL AR+R++ RR  
Sbjct: 61  KVLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRRCV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G++S++  A+T   +G  + LT KE  ++E L L +   +++E  + H++D
Sbjct: 121 VQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  +     I V I  LRKKL  A G  + I    G+GY++
Sbjct: 181 GSVDSFSNSIRVHISALRKKLRAALGY-DPITNRIGQGYLI 220


>gi|153011101|ref|YP_001372315.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562989|gb|ABS16486.1| two component transcriptional regulator, winged helix family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 233

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 119/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+ A+   + + L +E + V     G +  E     + D ++LDLGL D  G  
Sbjct: 7   KILVVDDEPAIRKLLRVGLTTEGYTVVEAVNGGEADERITTEKPDIVVLDLGLPDTDGHA 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           +L+  R   ++ P+ +LS  +     VR L+ GADDY+ KPF  +EL AR+R  +R R +
Sbjct: 67  LLQRWRETGVTLPILVLSSRTDEAGIVRALEEGADDYVPKPFGMKELAARLRVALRHRLQ 126

Query: 121 GHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +  +   D L+V+L  + V++ G  I L+ KEY ++ LL       LT    L+ ++
Sbjct: 127 QQGEKPLFQSDGLTVDLVRRIVKLNGEEIKLSPKEYDILRLLVQHAGKVLTHHFILSQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               + +   + +++ +LR+K+  +    +YI T  G GY LRE
Sbjct: 187 GPAADVQ--YLRIYVRQLRQKIEKSPDQPHYILTETGVGYRLRE 228


>gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383]
 gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. 383]
          Length = 224

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 5   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 65  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 185 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 224


>gi|152997395|ref|YP_001342230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150838319|gb|ABR72295.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 239

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 10/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA   +  L+   F V +   G   I      +   +ILDL L    GF V
Sbjct: 9   ILIVEDDERLALLTQEYLQKNGFTVGIEPDGRKAISRIVEEQPSLVILDLMLPGADGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R++R      P+ +L+  S   D++ GL+ GADDY+SKP     L+AR+++++RRS   
Sbjct: 69  CRSVRND-YKGPILMLTARSDDVDQILGLEIGADDYVSKPAKPRVLLARVQSLLRRSTQD 127

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +  +  G L+++   +   +    I LT  E+ ++ LLS      L++E 
Sbjct: 128 VDLTLDLSKEEQNLTFGPLTIDNSRREAWLLEEEIELTSAEFDLLWLLSSNAGRILSREE 187

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               L     + + + +DV I ++R K+ +       I+T+  +GY+  +  
Sbjct: 188 IFGELRGIEYDGQDRSVDVRISRIRSKIGDDPIHPRRIKTIRSKGYLFVKEV 239


>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
 gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
 gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 81/227 (35%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + G  G+E     E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAI-NDEIDLILLDVMMPRLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKKLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQIN 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   I   D+ V    +     G  I LT  E+ ++  L       +TKE     
Sbjct: 122 TAPKAASDKIQYQDIEVFPGKQEAYCNGQLIDLTTTEFALLSHLIQNPGQVITKEALSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ I  LRKK+   + GK+ I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLLVEE 228


>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 221

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 72/219 (32%), Positives = 125/219 (57%), Gaps = 3/219 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+IED+  +   ++  L+ E +++ +   GE G+EL +  + D I+LD  L  + G +
Sbjct: 3   HILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   I+ P+  L+   +++D + GLQ GA+DYI KPF+ EEL+ RI+   R S  
Sbjct: 63  VCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIKIHFRNS-- 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q ++  G++S+N     V+++   I LT +E++++E L   K     ++  +  ++  
Sbjct: 121 IEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             E +  +IDVFI  +RKKL+       YI+TV G GY+
Sbjct: 181 NFEYDTGVIDVFINAIRKKLNLDKDN-GYIKTVRGVGYI 218


>gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
 gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum
           C19]
          Length = 224

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ +D    A  I   L      V     G + +       FDAI+LD  L    G 
Sbjct: 1   MKILVADDQAETADFIRRGLSQAGHVVATVGTGTEALFRAMEESFDAIVLDRMLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR     TPV +L+ M  I D+V GL++GADDY++KPF   EL AR+  I+RR  
Sbjct: 61  SVLKMLRAGGNRTPVILLTAMGGISDRVEGLENGADDYLTKPFALSELSARLNVIMRRPA 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G++ ++L  +TV   G RI L  +E  M+E L    +  +TK M L  ++
Sbjct: 121 VVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELMRNVHRVMTKAMLLERVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   +P   I++  I +LR KL NA    + I TV G GY++R
Sbjct: 181 DFDFDPHTNIVETHISRLRAKL-NAGFDDDAIITVRGAGYMIR 222


>gi|296169900|ref|ZP_06851512.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295895456|gb|EFG75158.1| KDP operon response regulator KdpE [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 226

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+I+D+  +  ++ + L    + V     G   +     ++ D ++LDLGL DI G +
Sbjct: 3   RVLVIDDEPQILRALRINLSVRGYEVITASSGAGALRAAAEHKPDVVVLDLGLPDISGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++ PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR+  
Sbjct: 63  VLAGLR-GWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +   Q +I T   +V+L AK V   G  +HLT  E+ M+E+L   +   + +E  L  +
Sbjct: 122 ASELEQPVIETDTFTVDLAAKKVIKNGAEVHLTPTEWGMLEMLVRNRGKLVGREELLKEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E   + V++ +LR+KL +      ++ T  G GY   E
Sbjct: 182 WGPAYATETHYLRVYLAQLRRKLEDDPSHPKHLLTESGMGYRFEE 226


>gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
 gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 245

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD+ + +++++ L    + V     G++         +  +ILD+ L  + G 
Sbjct: 28  IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R    +TPV +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 88  ELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  +  G L++  +   V      + LT KE++++ LL      TL+ E+ L+ ++ 
Sbjct: 147 AVAKE-LHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 205

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   +   I  LR KL +       I+TV G GY L E +
Sbjct: 206 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 245


>gi|307564544|ref|ZP_07627085.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346904|gb|EFN92200.1| response regulator receiver domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 234

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ +A  +++ ++   + V V   G  G++L   Y+F  II D+ L  + GF+
Sbjct: 4   QILIVEDEQRVADLLKVGIEEHGYEVMVAYDGMMGLQLFNKYDFKLIISDIILPKLDGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R      P+ +L+ + + +DK+ G   GADDY+ KPF+  ELVAR++ +++R+  
Sbjct: 64  LCKEIRTKNKHVPILMLTALGTTDDKLEGFDVGADDYMVKPFDLRELVARMKVLLKRNSS 123

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      IV  DL +N +    +  G  I LT KEY +++ + L  +  + +    
Sbjct: 124 QIYESEGNAVDIVYADLQINPNLHECKRGGVAIKLTPKEYNLLKYMMLHADRIIPRTEIA 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++    +     IDV+I  LRKK+  +   K  I T  G G+VL +
Sbjct: 184 EKVWGTHFDTGTNFIDVYINYLRKKIDRSFPVK-LIHTKPGIGFVLTD 230


>gi|268318212|ref|YP_003291931.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262335746|gb|ACY49543.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 243

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +    K E F V +   G + +E    ++ D IILD+ + ++ G E
Sbjct: 19  RVLIVDDEDDILALLAYNFKREGFEVELARDGVEALEKAARWQPDVIILDIMMPNMDGIE 78

Query: 62  VL--RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-- 117
           V           +TP+ +L+  +  ED+++GL+ GAD Y+ KP +   L+++ RA++R  
Sbjct: 79  VCRRIRRDARLRTTPILMLTARTEEEDQIQGLEIGADMYVGKPVSVPVLLSQTRALLRGA 138

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           R       L+   DL ++ D   V  +G      + L  KE++++  L+       T++ 
Sbjct: 139 RRYETPPDLLRIHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQE 198

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            L+ ++        + +DV I K+R+KL     G +YIETV G GY  RE
Sbjct: 199 LLDEVWGRDVYVVDRTVDVHIRKIREKL-----GSHYIETVKGVGYKFRE 243


>gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
 gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
          Length = 242

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 9/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D + +  ++   L    F     +      +  K    D ++LD+ +    G  
Sbjct: 7   HILVVDDHRDIRETLARYLIKNGFRATSVESAAHARKALKAAVIDLVVLDIMMPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L     S PV +L+ M+   D+V GL+ GADDY++KPFN  EL+ARI+A++RR+  
Sbjct: 67  LCRHLVATG-SIPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRTNT 125

Query: 122 HAQSL-------IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             +         +      +++  + +   +G  + L+  E+Q++     R    L ++ 
Sbjct: 126 EPKDRDPLDHELLSFEGWQLHVGKRELFDAEGAPVPLSSGEFQLLCAFLKRPKMVLNRDQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            ++           + ID  + +LRKK+         I+TVWG GY+   +  D   
Sbjct: 186 LMDLTTGRMPNVFDRSIDNQVSRLRKKIEVDPKDPKLIKTVWGGGYMFTADVSDHAA 242


>gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
 gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
          Length = 227

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL ED+K +A +I  +LK E ++V     G   +   +   +D  ILD+ +  + GF
Sbjct: 1   MRILLAEDEKRMAAAIVALLKQEKYDVDHMADGVSALLALESNMYDIAILDVMMPKMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R  R   I+ P+ +L+  S ++DKV GL +GADDY++KPF+  EL+AR+RA+ RRS 
Sbjct: 61  EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQ--GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               S++  GDLS++    T+     G  + L+ KE +++E +       +T++     +
Sbjct: 121 NFQDSVLHFGDLSLDTSTATITCNSSGQSVRLSEKELRILEYMIGSHGRIVTRDQLAIKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    + E   ++V++   RKKL    G K  I+ V G GY LRE 
Sbjct: 181 WGFESDAEYNNVEVYMSFTRKKL-AFVGSKVEIKAVRGLGYELREQ 225


>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
 gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
 gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F+V   + GE G+      + D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAI-NDKIDLILLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSST 121

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++      I   ++ +    +    +   + LT  E+ ++          LTKE     
Sbjct: 122 QKNTKNSDCIEYQEIRLYPGKQEAYCEQQLLDLTATEFALLTHFVQNPGQVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLLEE 228


>gi|127511829|ref|YP_001093026.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126637124|gb|ABO22767.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 237

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             Q+    +  G LS++   + + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPQAESHCLSFGKLSIDPHTQAIRLGDLEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A +
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEAWN 236


>gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 227

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL++EDD+ L+  I    + + ++       +DG  + + +  D IILDLGL D  G
Sbjct: 1   MKTILILEDDENLSRGIAFTFEKDGYDAVSAGSIQDGKRMLEQHNIDLIILDLGLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            ++ + +R    + P+ +L+      D+V GL  GADDYI+KPF+   L AR+ A++RR+
Sbjct: 61  MDLCKEIRT-YSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQ-GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ +I +G   ++ +           I ++  EY+++  L       L+KE  L+ L
Sbjct: 120 ESESRHIIHSGKYKLDAELCKFFRGEEEEIPISATEYRLLSFLMTNAGQVLSKEQILSFL 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +  +   + V I +LR KL +       I+T+ G GY+ 
Sbjct: 180 WDNEGNFVDENTLPVNISRLRAKLEDDPKNPQTIKTIHGIGYIW 223


>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
           with baes [Clostridium sticklandii DSM 519]
 gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
           with BaeS [Clostridium sticklandii]
          Length = 227

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 125/228 (54%), Gaps = 6/228 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I +++D+K +   IE+ LK E +N    +  +  +   + +  D ++LD+ +  + G
Sbjct: 1   MKHIFIVDDEKRIRDLIEMYLKKEGYNTTTFESADGVLSAIREFMPDLLVLDIMMQGLDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR- 118
            ++ + +R      P+  +S  S   D++ GL+ GADDY++KPF+  ELV RI+ I++R 
Sbjct: 61  LDLCKEIRKIS-EVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRT 119

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S  H   ++ T DL + +  + V+  G  I LT KEY+++E L    N  L++E  + 
Sbjct: 120 TKSSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++    +   + +D  I +LRKKL  A   +  I+TVWG GY + +N
Sbjct: 180 SIWGYDYDGYDRNVDDTIKRLRKKLKTA-KSRVVIKTVWGYGYRIDDN 226


>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
 gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
 gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
          Length = 228

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 226


>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
 gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
           protein [Marinobacter algicola DG893]
          Length = 228

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 112/222 (50%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD+ L   +   L ++ F V     G+DG+ L      D ++LD+ L DI G E
Sbjct: 4   RVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIMLPDISGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR  K   PV +L+      D++ G + GADDYI KP N  EL+AR++A++RR   
Sbjct: 64  VLRQLRA-KTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVAW 122

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         GDL V    + +      + LT  EY+++++L     + + K   +  
Sbjct: 123 DQEVGMDDSRAYGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLMQW 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               R E   + +D+ I  LRKKL N       IETV G GY
Sbjct: 183 ALGRRLEAYDRTLDMHISNLRKKLGND--DPPRIETVRGLGY 222


>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
 gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
          Length = 229

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 80/227 (35%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E F V   + G  G+E     E D I+LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKDILSFEGFTVSEANDGYAGLEAI-NDEIDLILLDVMMPRLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++  
Sbjct: 63  LKKLRE-HWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQTT 121

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A   +   D+ V    +     G  I LT  E+ ++  L       +TKE     
Sbjct: 122 NTPKAASDRVQYQDIEVFPGKQEAYCNGEIIDLTTTEFALLSHLIQNPGQVITKEALSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ I  LRKK+   + GK+ I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHISNLRKKIPERSDGKSRIKTLRGRGYLLVEE 228


>gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 125/225 (55%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL IEDD   A  I   L     +V   D G +G+E     ++D I LD  L ++ G  
Sbjct: 3   RILTIEDDAVTAREIVAELTRNGLDVDWVDNGREGLERAVSGDYDLITLDRMLPELDGLV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR   ++TP+ ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR+ G
Sbjct: 63  IVTTLRTMGVATPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRRNNG 122

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++   DL +NL ++     G  + L   EY+++E L       L++ M    ++
Sbjct: 123 AREPETVLRVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +P   +IDV I +LRKK+ +  G +  I TV G GYV+ E 
Sbjct: 183 GYHFDPGTNLIDVHIGRLRKKI-DPPGLEPLIRTVRGSGYVIAEP 226


>gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
 gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567]
          Length = 247

 Score =  247 bits (632), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R L+++D++ L   + + LK   + V     G   + + + +  D ++LD+ +    G 
Sbjct: 23  IRALVVDDEEMLKELVSMGLKMIGWEVQSAGDGPAALAIARDWRPDVLVLDIMMPGFDGL 82

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R      P   L+   S+++++ GL +GADDY++KPF+ EE++ R+  +V+RS 
Sbjct: 83  ELLDRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSG 142

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A   + +V GDL +N D + V   G  I LT  ++ ++  L       ++K   L+++
Sbjct: 143 VAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLRYLMENAKRVVSKSQILDNV 202

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++     +  I++++I  LRKK+    G +  I TV G GYV+R 
Sbjct: 203 WNYDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVIRP 245


>gi|332716521|ref|YP_004443987.1| two component response regulator [Agrobacterium sp. H13-3]
 gi|325063206|gb|ADY66896.1| two component response regulator [Agrobacterium sp. H13-3]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L ++++ V         +EL    + D ++LDLGL D+ G E
Sbjct: 7   RILIVDDEPPIRKLLRVGLSTQDYAVSEAMNARVAMELMNEDKPDLVVLDLGLPDMSGHE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L   R   +S PV ILS  +     V+ L+ GADDYI+KPF   ELVARIR  +R    
Sbjct: 67  LLEKWRGEGLSLPVIILSSRTDEAGIVKALELGADDYITKPFGMNELVARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +  TGDLSV+L  + V+V+   + L+ KEY ++ +L       LT    L H++
Sbjct: 127 SQGERPVFHTGDLSVDLVRRIVKVEDREVKLSPKEYDILRVLVQHAGKVLTHRFLLEHVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +  +V+ + V++ +LR+K+        YI T  G GY L+E
Sbjct: 187 --DELTDVQYLRVYVRQLRQKIEKIPDQPRYILTETGVGYRLQE 228


>gi|318060761|ref|ZP_07979484.1| two component system response regulator [Streptomyces sp. SA3_actG]
          Length = 256

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G  
Sbjct: 23  RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+  
Sbjct: 83  VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 142

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ ++
Sbjct: 143 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 202

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +++++I  LR+K+    G +  I T  G GY+++ 
Sbjct: 203 SYDFGGQANVVELYISYLRRKI--DRGREPMIHTRRGAGYLIKP 244


>gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597]
 gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597]
          Length = 231

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +    +  L    + V V   G + +E+ +    D II D+ +  + G+++
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMDGYDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR  RG
Sbjct: 65  ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +N  +  V+V    + LT K ++++ LL+       +K      ++  
Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223
               +   ++V I  LR++L+  A  +   I+TVWG GY + +
Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|170693423|ref|ZP_02884582.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
 gi|170141578|gb|EDT09747.1| two component transcriptional regulator, winged helix family
           [Burkholderia graminis C4D1M]
          Length = 290

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 24  MRILIAEDDSILADGLVRSLRQSAYAVDHVKSGVEADTALSMQSFDLLILDLGLPRMSGL 83

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 84  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 143

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L  +   +   +    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 144 GGGPTIVRHGSLGFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 203

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 204 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 243


>gi|108800890|ref|YP_641087.1| two component transcriptional regulator [Mycobacterium sp. MCS]
 gi|119870030|ref|YP_939982.1| two component transcriptional regulator [Mycobacterium sp. KMS]
 gi|126436516|ref|YP_001072207.1| two component transcriptional regulator [Mycobacterium sp. JLS]
 gi|108771309|gb|ABG10031.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. MCS]
 gi|119696119|gb|ABL93192.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. KMS]
 gi|126236316|gb|ABN99716.1| two component transcriptional regulator, winged helix family
           [Mycobacterium sp. JLS]
          Length = 254

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  LA  + + L+ E +++     G   I L +    D ++LD+ L D+ G +
Sbjct: 30  RVLVVDDEPVLAELVSMALRYEGWDIATAGDGATAIALARENPPDVVVLDVMLPDMSGLD 89

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR+  
Sbjct: 90  VLAKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVLRLRALLRRTGV 149

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ ++
Sbjct: 150 SESGGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNSKRVLSKAQILDRVW 209

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                    I+++++  LRKK+   +G +  I T+ G GYVL+  A+
Sbjct: 210 SYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLKPAAR 254


>gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9]
 gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum SS9]
          Length = 261

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/242 (26%), Positives = 107/242 (44%), Gaps = 22/242 (9%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D   +   ++  L   N+ V V   G +  +  +    D I+LDL L    G  
Sbjct: 15  HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEMEQCLRDNSIDLIVLDLMLPGKDGLT 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LRV   + PV +L+ M    DK+ GL+ GADDY+ KPFN  EL+AR++A++RR   
Sbjct: 75  LCRELRV-HSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRRFNA 133

Query: 122 HAQSL--------------------IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIEL 160
             +                              ++  + +    G  + LT  E+ ++++
Sbjct: 134 IPEGKSVRQSKVDSVEEAQDKESYVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKV 193

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                   L++E  L+       +   + ID  I +LRKKL         I+T+WG GY 
Sbjct: 194 FVEHPRKVLSREQLLDLAKGRETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGGGYQ 253

Query: 221 LR 222
           L 
Sbjct: 254 LV 255


>gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217]
 gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217]
          Length = 223

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 121/222 (54%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD      I   L+ E  +V +   G D +       +D +I+D  L +I G 
Sbjct: 1   MKLLVVEDDATTGAYIARGLREEGQSVDLVSNGRDALIQATSGPYDVLIIDRMLPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR A   TPV  L+ + S++++V GL +GADDY+ KPF   EL AR+ A+ RR  
Sbjct: 61  TLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRPH 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++++  G L ++L A+ V  + H I L  +E+ ++E L  RK    T+ M L  ++
Sbjct: 121 ALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +P   +++  I +LR K+ +     + I+TV G GY +
Sbjct: 181 DISFDPMTNVVETHISRLRAKV-DRPFATDLIKTVRGAGYRI 221


>gi|299822697|ref|ZP_07054583.1| two component response regulator [Listeria grayi DSM 20601]
 gi|299816226|gb|EFI83464.1| two component response regulator [Listeria grayi DSM 20601]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++D+K L+  ++ +L+ E   ++ +     +G    +  + D ++LD+ L D  G+
Sbjct: 3   KILIVDDEKELSLLLKRILEKEGLSDISIAQNLAEGYTKFEAEKPDLVLLDIMLPDGEGY 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R   I  P+  +S      DK+ GL  G DDYI+KPF+ +E+  R++A +RR+ 
Sbjct: 63  DLCKKIRETSI-VPILFMSAKGEEIDKLLGLAIGGDDYITKPFSPKEVAYRVKAHLRRAN 121

Query: 121 GH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q  +  G    N +   +   G  + LT KE  ++ +     N  ++KE     +
Sbjct: 122 FTVPQQKALQVGPFQFNDNETELRKAGEPLELTAKEIALMRVFMHNPNQIISKETLFERV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +          + V I +LR+K+        Y+ TV G GY  
Sbjct: 182 WQETFLGADNTLMVHIRRLREKIEAQPSKPEYLITVKGLGYKF 224


>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
 gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
           [Pseudomonas mendocina ymp]
          Length = 227

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++ +  ++   L+ + F+V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +V + LR    S  P+ +L+   +++D+++GL +GADDY+ KPF   ELVARI AI+RRS
Sbjct: 61  QVCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           RG  +  +   DLS +LD   V   G  + L     +++ +L  R    + +E     L+
Sbjct: 121 RGSRKRQLQVADLSYDLDTLHVSRAGQALKLNPLGLKLLAILMQRSPAVVRREALEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D P+   +   + +LR+ L         + T+ G GY L E+A
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVLDKPFPTP-LLHTIHGVGYRLAESA 224


>gi|325916695|ref|ZP_08178954.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
 gi|325537095|gb|EGD08832.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
          Length = 233

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/232 (34%), Positives = 121/232 (52%), Gaps = 3/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNADLADAIVRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A TV + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFVFDNAAHTVTLDGTPIELPNREYRLLEILIGRLGHVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
             D+     I++++ +LR+KL   A     I TV G GY L E       E 
Sbjct: 181 FDDDAGPNAIELYVGRLRRKL---ASAPLRIVTVRGAGYKLEEADPHAPVEP 229


>gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
 gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus
           anaerobius 653-L]
          Length = 224

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 125/224 (55%), Gaps = 8/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           RIL+I+DD ++   +     + +++V   + G +GI+L +    +D I+LD+ + ++ G+
Sbjct: 5   RILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIMMPNLDGY 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
              + +R      P+  +S +++  D+++G + G DDYI+KPF+   LV ++ A+++R+ 
Sbjct: 65  TTCKMIRNTS-KVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKRTS 123

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             + +  IV   + ++LD  ++ + G+ + LT KE+ +++ L  +    +T+E  L+ ++
Sbjct: 124 ETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQIW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 + +I+D  I  +RKKL        YI TV G GY L +
Sbjct: 184 GYDYYGDTRIVDAHIKNIRKKLKI-----PYIRTVKGIGYTLEK 222


>gi|257454835|ref|ZP_05620086.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
 gi|257447768|gb|EEV22760.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60]
          Length = 222

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 5/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A S+   L+ E + V     G + I   K   +D I+LDLGL +I G 
Sbjct: 1   MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  LR AKI TPV +L+    I+D+V+GL +GADDY++KPF   EL+AR+R +VRRS+
Sbjct: 61  SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G++ + +  GDL+++++ K ++  G  I +T KEY ++       +   +K    N +Y+
Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                E   I+  I  LRKK+     G+  I+ + G G+ +   ++D
Sbjct: 181 WEAGIESNAIEFLIYGLRKKI-----GQKRIKNIRGLGWYISAESQD 222


>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
 gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
 gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
          Length = 225

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVDT 223


>gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family
           [Mycobacterium vanbaalenii PYR-1]
          Length = 250

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E + +     G   I + +    D ++LD+ L D+ G 
Sbjct: 25  IHVLVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDVMLPDMSGL 84

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EVLR LR      P+ +L+   S+ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 85  EVLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 144

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S   + + IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 145 VSTDTSGAKIVVGDLVLDEDSHEVTRGGDPITLTATEFELLRFMMRNAKRVLSKTQILDR 204

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         I+++++  LRKK+   +G +  I T+ G GYVL+ 
Sbjct: 205 VWSYDFGGRSNIVELYVSYLRKKI--DSGREPMIHTLRGAGYVLKP 248


>gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10]
 gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulolyticum H10]
          Length = 226

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED K +   +  +L  E F V+ T  G DG +  K   +D I+LD+ L    G E
Sbjct: 3   KILIIEDSKDVNSMLTEVLTEEGFEVFSTYTGTDGFKEIKKNTYDLILLDIMLPFKSGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+ +R      PV I+S    +  K+  L+ GADDYI+KPF+  E+VAR+ A +RRS  
Sbjct: 63  ILKEVRQFS-DIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRRSHR 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +  +   D++VN DAK V V    + LT KEY ++ELL   +N   TK      ++
Sbjct: 122 KTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYETIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   +   I  LR KL  A   K YIETVWG GY L
Sbjct: 182 QDAYLGDDNAVKTHISNLRAKLKIANTQKEYIETVWGLGYRL 223


>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
 gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
          Length = 226

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           ++L++ED++ +  ++      + + V   + G+ G++L   + +    +ILD+ L  + G
Sbjct: 3   KVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V R +R    + P+ +L+  S  +D + G + GADDY++KPF    L+AR + + + +
Sbjct: 63  WSVCRRIR-KNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDT 121

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               Q    I    + ++  A++V + G +I  T  EY+++  L   K   L++E  + +
Sbjct: 122 NQQVQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + + K +   +  +R KL   A    +I TV   GY   
Sbjct: 182 IWGYDYDGDDKTLTAHMRNVRLKLGEKA---KHIITVVRTGYKFE 223


>gi|256374761|ref|YP_003098421.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255919064|gb|ACU34575.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 228

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 119/229 (51%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L+   + V +   G+  +E       DA++LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLQFNGYQVDLAGDGQQALESVLSQRPDAMVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   ++ D+V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDAVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRTA 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   DL ++   + V      I LT  E+ ++EL        LT+   L  
Sbjct: 121 TDVEEPVNLLRFADLELDPGTRDVRRGERPISLTRTEFALLELFLAHPKQVLTRGRILED 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K + A G    + TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRK-TEAGGEPRLLHTVRGVGYVLRETPP 228


>gi|255656291|ref|ZP_05401700.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296450268|ref|ZP_06892029.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296878683|ref|ZP_06902688.1| response regulator VanR [Clostridium difficile NAP07]
 gi|296261031|gb|EFH07865.1| response regulator VanR [Clostridium difficile NAP08]
 gi|296430490|gb|EFH16332.1| response regulator VanR [Clostridium difficile NAP07]
          Length = 238

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  LK +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLKPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ +LS  S   DKV GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIRE-KRNIPIILLSAKSEDMDKVIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          + +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++++       + I V I ++R+K+        Y++ VWG GY + +
Sbjct: 184 REIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 235


>gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 221

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRRKLQ---GSSVEIRTARGMGYQI 218


>gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
 gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC
           3502]
 gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
           19397]
 gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
          Length = 230

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y +D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    Q+L+   ++S+N D + V +   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKL 228


>gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
 gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
          Length = 256

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 19  QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 79  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 138

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 139 TPSAAAPEQREPFAFGRFLLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 198

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 199 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 250


>gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis
           3_1_12]
 gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
 gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis
           3_1_12]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/227 (27%), Positives = 117/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++     +  ++LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-NISSYHLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANILKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 RGH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    L +++  K V + G  + LT KE++++ LL   K    ++E  L
Sbjct: 124 ATSDMEKVPEQLSYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 SRIWSDEVYVLDRTIDVNITRLRKKIGIYG---KRIVTRLGYGYCFE 227


>gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
 gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
          Length = 222

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ ED+  LA +I+++L++E + V     G+D  E     E+D IILD+ +  + G 
Sbjct: 1   MRLLIAEDEAELARAIQVILENEGYTVDSVHDGKDAYEYAVLAEYDGIILDIMMPKLSGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR     TP+ +L+  S+IE+++ GL  GADDY++KPF   EL+ARIRA+ RR  
Sbjct: 61  EVLEKLRSEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMTRRKT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +   DL +N D   +      I L+ KE Q+++LL        + +  +  ++ 
Sbjct: 121 VLQANNLTFEDLELNKDIMRISNGQDEIKLSNKECQILQLLMENPKQIFSADQMIERIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E+  I V +  LRKKL+        + T  G GY L 
Sbjct: 181 WDSDIEMNSIWVHLSNLRKKLAELDVHVKIVAT-RGVGYSLE 221


>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
 gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
          Length = 233

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 8/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DDK LA  +   L +E + +     GEDGIE  K + +D ++LD+ +  I GFE 
Sbjct: 6   ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGFET 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R + I  PV +L+      D++ GL+ GADDY++KP++  EL+ARI+A++RR    
Sbjct: 66  LKRIRESSI-VPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELD 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     ++    + +N D   V   G  I +T  E++++ +L  R    + KE    
Sbjct: 125 KNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLYL 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +         + ID+ +  +R+KL         I+T+ G GY+  + ++
Sbjct: 185 EVLGREIMAYDRSIDMHVSNVRRKLGGTTEQSK-IQTIRGIGYMFVDPSQ 233


>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 113/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +    +    + V+  ++TV V    I+LT  E++++  L   +   LT+E  ++
Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++      + + ++  I  LR KL   A    Y+ TV   GY    N 
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYVTTVVRTGYKFEGNV 229


>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
 gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
          Length = 224

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 128/222 (57%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL ED+KAL+ +++++LK  N++V     G++  +      +D +ILD+ +  + GF
Sbjct: 1   MRLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R      PV +L+  S  +DK+ GL  GADDY++KPF+ +EL+ARIRAI RR  
Sbjct: 61  TVLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + ++ GD ++N     +   G  + L  KEYQ++ELL   + + ++ E+ +  ++ 
Sbjct: 121 EAVSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E+ ++ V I  LRKKL    G K  I+ V  +GY L 
Sbjct: 181 YDTDTEISVVWVNISYLRKKLGQI-GSKVSIKAVRNQGYTLE 221


>gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
 gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family
           [Ethanoligenens harbinense YUAN-3]
          Length = 247

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/220 (26%), Positives = 107/220 (48%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++++ED+  +   +   L +E +       G + + L        ++LD+ +  I GFEV
Sbjct: 24  VMIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVMMPGIDGFEV 83

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR      PV +L+      D++ G   GADDY+ KPF+ +EL+ R+ A++RR    
Sbjct: 84  LRELRKIS-DVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALIRRVYHD 142

Query: 123 AQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           A  ++    DLS++  A  +      I +T  EY +++ +       L++E  +   +  
Sbjct: 143 ADGIVYRYRDLSLHTRAMKLYKGDAEISITAAEYALLDAMFRHPGQVLSREQLIELAFGS 202

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           R E   + ID +I ++R+K+ +       + T +G GY  
Sbjct: 203 RYEGYDRNIDSYIKRIRQKIEDDPKNPQILITKYGAGYRF 242


>gi|282901164|ref|ZP_06309094.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193938|gb|EFA68905.1| Multi-component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 511

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/236 (29%), Positives = 121/236 (51%), Gaps = 1/236 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD +L   ++  L +  + V +   GE G+E+   + +D I+LD+ +  + G 
Sbjct: 1   MKILIVDDDTSLCQLVKTSLVAHRYLVDIATDGEMGLEMGYQFNYDLILLDILMPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR       + +++  ++ ED + GL +GADDY+ KP+   EL+ARIR+  RR  
Sbjct: 61  SLCHTLRDKGYQGQIIMVTAKTTQEDIIIGLDAGADDYLIKPYCIHELLARIRSCSRRIG 120

Query: 121 GHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +  S++    LS+N +   V+     I+L+ +E+Q++EL         T+   ++ L+
Sbjct: 121 TKSGLSILTHNKLSLNPELIEVKYDELSINLSRREFQLLELFLRHPQKIFTRGQIIDKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEYLET 235
              D P    +   +  LR KL  A   +  IETV G GY L    + E  E + T
Sbjct: 181 SIDDSPTDGAVTNLVKDLRGKLKKAGMQEEVIETVHGLGYRLTSKRELERVETIPT 236


>gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 220

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 88/222 (39%), Positives = 130/222 (58%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED++ LA  IEL L  EN+ V + + G +G++     E+D  +LDL L  + G E
Sbjct: 3   KILIVEDEQNLARFIELELIHENYEVDIENDGAEGLKTALSKEYDLYLLDLMLPHMDGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  K STP+ I++      DKV GL  GADDYI KPF+ EEL+ARIRA +RR   
Sbjct: 63  ICRKIREVK-STPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRR--Q 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+  I    + ++  A  V + G  + LT  EY +++LL+   N  + +E  LNH++  
Sbjct: 120 PAKDTITIKGIEIDKAAFRVTIDGQELELTKTEYDLLQLLTENLNHVMQREQILNHVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E E  ++DV+I  LR KL      +  IETV G GYV+R+
Sbjct: 180 DSEVETNVVDVYIRYLRNKLKP-FNKEKVIETVRGVGYVIRQ 220


>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
 gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
 gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
          Length = 231

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 124/226 (54%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGF 60
           ILL+ED++ L+  +   L+ EN+ + +   G+  ++  +    + + IILD  L  + G 
Sbjct: 5   ILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPKLDGL 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      P+ +++    + DKV GL +GADDYI+KPF  EEL+ARIR ++R S+
Sbjct: 65  EVLRRIRQ-NDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRHSQ 123

Query: 121 GHAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             A S       DL++N  ++ V      I LT +EY+++  L      T+T++  LN +
Sbjct: 124 NQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELLNLV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +    E +  ++DV+I  LR K+      K  I TV G GYVL  N
Sbjct: 184 WGVDFEGQPNVVDVYIRYLRNKVDRNFK-KTLIHTVRGVGYVLSAN 228


>gi|209695438|ref|YP_002263367.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
 gi|208009390|emb|CAQ79664.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
          Length = 219

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD+ L   I   L++ N+   ++  G D +       +DAI+LDLGL  + G 
Sbjct: 1   MKILVVEDDQRLGQQIIDALEANNWTPELSQDGIDALYRATSESWDAIVLDLGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR   ++ PV ILS   ++  ++ GL +GADDY++KPF   EL+AR+R  +RR+ 
Sbjct: 61  TVLKGLRDESVNIPVIILSARDTLTQRIDGLNAGADDYLTKPFELPELIARLRVQLRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S++  G+LS++  +  +   G  I LT  EY+++      K   +++   + H+Y 
Sbjct: 121 GSASSVLKIGNLSLDTCSSKIVWYGETIELTALEYKVVAYFMHNKEKVISRTELVEHIYK 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VFI ++R+KL       + I+TV G GY L
Sbjct: 181 QDFDRDSNTIEVFIGRIRRKL-----SPSVIKTVRGLGYQL 216


>gi|194367131|ref|YP_002029741.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194349935|gb|ACF53058.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 231

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/224 (35%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+  LA +I   ++     V     G     + ++  FD ++LD+GL  + G 
Sbjct: 1   MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL  +R    STPV +L+    IED+V+ L  GADDY+ KPF+  E  AR R ++RR+R
Sbjct: 61  RVLSGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G    +  A  V + G  I L  +EY+++E+L  R    + K+   N L+ 
Sbjct: 121 GQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             DE     I+++I +LRKKL   A     I TV G GY+L  +
Sbjct: 181 FDDEAGPNAIELYIGRLRKKL---AAAPLRITTVRGVGYLLEAS 221


>gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 220

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  LA  I   L      V       D         FDA++LDL L D  GF
Sbjct: 1   MRILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPDGSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    +TPV +L+ +    D+VRGL  GADD++ KPF+ +EL AR+RA+VRR  
Sbjct: 61  DVLATLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRRGG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G ++++    +V +    + ++ +E+ ++ +L  R     +K      LY 
Sbjct: 121 GRASPLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGELEERLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            ++E E   ++V+I  LR KL         IETV G GY LR  A
Sbjct: 181 WQEEIESNTVEVYIHNLRAKLGRD-----LIETVRGLGYRLRVPA 220


>gi|152985885|ref|YP_001350928.1| two-component response regulator [Pseudomonas aeruginosa PA7]
 gi|150961043|gb|ABR83068.1| two-component response regulator [Pseudomonas aeruginosa PA7]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD      ++  L    + V  +  G DG+ L     +D ++LD+ L  + G+
Sbjct: 1   MRILVVEDDAKTGEYLKKGLGESGYAVDWSRHGADGLYLALENRYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR      PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLRKKH-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLHLDVLRRKVSRQGQLIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +       I TV G GYV  E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DNPFPNKLIHTVRGIGYVCEERP 223


>gi|77460466|ref|YP_349973.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384469|gb|ABA75982.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens Pf0-1]
          Length = 240

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/232 (27%), Positives = 106/232 (45%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ LA      L++    V +   G          + D +ILDL L    G  
Sbjct: 7   QVLIVEDDQRLAELTREYLQANGLRVEIEGNGALAAARIIKEQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R  +   P+ +L+  +   D++ GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRKVR-DRYDGPILMLTARTDDADQILGLDLGADDYVCKPVRPRLLLARIQALLRRSDT 125

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  G L V+   +   +    I LT  E+ ++ LL       L++E    
Sbjct: 126 LEAPAGNPRRLQFGPLVVDNALREAWLSDSGIELTSAEFDLLWLLVSNAGRILSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  E
Sbjct: 186 ALRGIGYDGQDRSIDVRISRIRPKIGDDPDHPRLIKTVRSKGYLFVPEACAE 237


>gi|41406357|ref|NP_959193.1| hypothetical protein MAP0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118466148|ref|YP_879593.1| DNA-binding response regulator [Mycobacterium avium 104]
 gi|41394705|gb|AAS02576.1| hypothetical protein MAP_0259 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118167435|gb|ABK68332.1| DNA-binding response regulator [Mycobacterium avium 104]
          Length = 246

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G 
Sbjct: 21  INVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGL 80

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 81  DVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 140

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + + +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 141 VTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDR 200

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         I++++I  LRKK+ N  G +  I T+ G GYVL+ 
Sbjct: 201 VWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLKP 244


>gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
 gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
          Length = 228

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D++ +    +   + E ++V     G++ ++L      D +++D+ + ++ G+E
Sbjct: 3   HILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN-VDVMVIDIMMPEMNGYE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V+R ++   +  P   L+  +S +D + GL  GADDY+ KPF+  ELV R++ ++ R   
Sbjct: 62  VVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNV 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q  I  G L +N   KTVE++G  I    KE++++   +  ++  L+K   L  +
Sbjct: 122 TSPSTQETIHCGRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      ++  ++V + ++R+KL         I TVWG GY  +
Sbjct: 182 WGYEYYEDMNTLNVHVHRIREKLEKYGYDDYIIATVWGLGYKFQ 225


>gi|296270269|ref|YP_003652901.1| winged helix family two component transcriptional regulator
           [Thermobispora bispora DSM 43833]
 gi|296093056|gb|ADG89008.1| two component transcriptional regulator, winged helix family
           [Thermobispora bispora DSM 43833]
          Length = 217

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 120/221 (54%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G + +E   + ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDERVLADAIATGLRREAMAVDVAYDGAEALEKLAYIDYDVIVLDRDLPKVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + L   +  + + +L+    ++D+V GLQ GADDY+ KPF   ELVAR+RA+ RRS 
Sbjct: 61  EVAKKLANERCPSRILMLTAAGDVDDRVEGLQLGADDYLPKPFAFAELVARVRALARRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   +TV   G  I LT KE+ ++E L       +++E  L+  +D
Sbjct: 121 PPLPPVLERAGIRLDPAKRTVTRDGRPISLTRKEFAVLEELMRADGAVVSQEDLLDKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL +       IETV G GY L
Sbjct: 181 EHIDPFTNVVRVTMMTLRKKLGD----PPIIETVPGVGYRL 217


>gi|269958512|ref|YP_003328299.1| putative response regulator [Anaplasma centrale str. Israel]
 gi|269848341|gb|ACZ48985.1| putative response regulator [Anaplasma centrale str. Israel]
          Length = 294

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 132/232 (56%), Positives = 163/232 (70%), Gaps = 4/232 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED--GIELCKFYEFDAIILDLGLTDI- 57
           MRILLIEDD A A ++E  L SE          +D  G  + K  ++D +ILD+      
Sbjct: 3   MRILLIEDDVACARAVEASLSSEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKV 62

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G+++L  LR + I  PV ILS +SS+  KV+GL  GADDYI+KPF+K EL+ARI+AIVR
Sbjct: 63  DGYDILVKLRESGIKVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVR 122

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           R+RGH +S++  G++S+NLD K VE  G  IHLT KEY MIELLS R  T LTKEMFL+H
Sbjct: 123 RTRGHPESIVRVGNISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSH 182

Query: 178 LYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           LY   DEP + KIIDVF+CKLRKKL  A GGKNYIETVWGRGYVL+E A D+
Sbjct: 183 LYRELDEPSDDKIIDVFMCKLRKKLKVANGGKNYIETVWGRGYVLKECASDD 234


>gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
 gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
          Length = 232

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 4/226 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V V    + LT K ++++ +L+   +   +K      
Sbjct: 121 LSRGGETEQIELGDLVINHVTHEVRVGEQSLELTVKSFELLWILASNPDRVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAG-GKNYIETVWGRGYVLR 222
           ++      +   ++V I  LR++LS         I+TVWG GY L 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELSKYTNLNTPAIKTVWGLGYKLE 226


>gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
 gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus bovienii
           SS-2004]
          Length = 230

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E F V +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDS-SIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQDH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       ++    L +N   +     G  + LTG E+ ++ LL+      +++E   
Sbjct: 121 SEQQADSGTPVLEVDKLQLNPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   R  P  + ID+ I  LR+KL N      + +T+ GRGY++ 
Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLMV 227


>gi|221197319|ref|ZP_03570366.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221203992|ref|ZP_03577010.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221176158|gb|EEE08587.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221183873|gb|EEE16273.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 221

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGSTANSLLRVERFDLVVLDANLPGLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AVLRNLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +K+  LN L+ 
Sbjct: 121 GHASDVLTLGGLVIDRSSRLAELDGKPLSLSRQEFALLEILASRPQRIFSKDELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRKKL---HGSSVEIRTARGMGYQI 218


>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
 gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
           [Hoeflea phototrophica DFL-43]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++ED++AL+  ++  L++E + V     G++     +    D +ILD  L  I G E
Sbjct: 6   RITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWMLPGISGIE 65

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R LR    +   P+ +L+      ++VRGL +GADDY+ KPF+  EL+AR+RA++RR+
Sbjct: 66  LCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRRA 125

Query: 120 RGHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 SL+  GD+ ++ +   V  +   I L   E++++E L        ++   L+ +
Sbjct: 126 SPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEFRLLEFLMSSPGRVYSRAQLLDGV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + + +DV + +LRK + N +G ++ I TV G GY + 
Sbjct: 186 WGHDVYVDERTVDVHVGRLRKAV-NLSGMRDIIRTVRGAGYSIE 228


>gi|116690673|ref|YP_836296.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170734017|ref|YP_001765964.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|116648762|gb|ABK09403.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169817259|gb|ACA91842.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 242

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 220


>gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2]
 gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
 gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1]
 gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           C3719]
 gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192]
 gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           LESB58]
          Length = 230

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R++   
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans
           TK24]
          Length = 222

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 124/220 (56%), Gaps = 5/220 (2%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           +D++++   + + L+ E + +     G   ++  + +  DA++LD+ L D+ G  VL  L
Sbjct: 2   DDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS---RGHA 123
           R      PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+R ++RRS      +
Sbjct: 62  RRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRS 121

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
            S++V GDL+++ D+  V   G  IHLT  E++++  L       L+K   L+ ++    
Sbjct: 122 DSVLVVGDLTLDEDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWSYDF 181

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +  +++++I  LR+K+   AG +  I T  G GY+++ 
Sbjct: 182 GGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLIKP 219


>gi|126444717|ref|YP_001061957.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126224208|gb|ABN87713.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
          Length = 220

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDGALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 241

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/234 (32%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ + + I   L+ E +     + G+  I L      D I++DLGL D+ G EV
Sbjct: 9   VLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGLPDMDGIEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R   +  P+ ++S  S   DKV  L  GADDY++KPF+  EL AR+RA +RR    
Sbjct: 69  IRKIRSWSV-VPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRRVQYI 127

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    +S+   GDL ++  A  V+V G  IHL   EY ++ LL+      LT +  L 
Sbjct: 128 MHTDNTNESMFQNGDLMIDYSAGVVKVSGVEIHLMPLEYSLLCLLAQNVGKVLTYQFILE 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL--RENAKDE 228
            ++      ++  + V++  LRKKL      + YI+T  G GY +   E + +E
Sbjct: 188 KVWPNGIGSDISSLRVYMTSLRKKLEKDKANQTYIQTHIGVGYRMLNVEESGEE 241


>gi|326797266|ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326548030|gb|ADZ93250.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 298

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 15/243 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPGFE 61
           + +++DD  +   ++  L+   F V   + GE  +E        + +ILD+ L    GF 
Sbjct: 57  VYVVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFHADLNVELVILDVMLPGQDGFA 116

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V RALR      PV +L+  S   D++ GL+ GADDY++KPFN  EL+AR++AI+RR   
Sbjct: 117 VCRALRTQS-EVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAILRRIEP 175

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                    +  A         +++  ++ +  +  +  LTG ++ ++ L        L+
Sbjct: 176 NDPIKEEQEKAKASRYYQFAQFTLDTLSRELHHEDSKEALTGADFNLLMLFLASPGAVLS 235

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK--DE 228
           ++    +       P  + IDV + +LR++L   A     I+TV G GY++    +  DE
Sbjct: 236 RDYIAENTRGRDSAPLDRFIDVHVSRLRQRLKEDARHPQLIKTVRGEGYIMTATVETFDE 295

Query: 229 TCE 231
             E
Sbjct: 296 LAE 298


>gi|297561828|ref|YP_003680802.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296846276|gb|ADH68296.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 217

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++ + L+ E   V V   G+  +E     ++D ++LD  L    G 
Sbjct: 1   MRVLVVEDERVLADTVAVGLRREAMAVDVVYDGDAALEYTAVNDYDVVVLDRDLPGTHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RAL     +  + +L+    ++DKV GL  GADDY++KPF   EL+AR+ A+ RRS 
Sbjct: 61  DVARALVRESYNGRILMLTASDGVQDKVEGLTIGADDYLAKPFAFAELIARVHALGRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++     V   G  + LT KE+ ++++L   + T ++ E  L   +D
Sbjct: 121 PPLPPVLERHGITLDPANHRVHRDGREVTLTPKEFAVLQVLMRAQGTVVSAEGLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL +       I+TV G GY L
Sbjct: 181 ENADPFTNVVRVTVMTLRKKLGD----PPVIQTVPGAGYRL 217


>gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 219

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G + ++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL +      +I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTL 216


>gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638]
 gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family
           [Enterobacter sp. 638]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 2/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L+ED+ ++A ++  ML  E F V   + G   ++          ILD+GL DI GFE+
Sbjct: 6   IWLVEDEISIAETLIYMLSQEGFAVKAFERGLPALDEAHRQAPALAILDVGLPDISGFEL 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L     S PV  L+  S   DK+ GL+ GADDY++KPF+  E+ AR+R I+RR +  
Sbjct: 66  CRQLLAQHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRMQKS 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           A    ++  G   +N  A  +   GH + LT  E+ +++ L        +++  ++ ++ 
Sbjct: 126 AAPSDIVRIGQFELNEPAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDKVWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +   + +D  I  LR KL       + I T  G GY L
Sbjct: 186 DEGDSFDRTVDTHIKTLRAKLRAINADLSPISTHRGMGYSL 226


>gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
 gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
          Length = 228

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL++D+  L    +  L    + V V   G++ +EL + Y  D II D+ + ++ G++
Sbjct: 4   RILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMDGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  ++      P   ++  +S  DK+  L  GADD+I+KPF+  ELV R+  I+RR   
Sbjct: 64  LIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRRIHR 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              A   +  GDL +N   + V V G  + +T K ++++ +L+       +K      ++
Sbjct: 124 SAGADEKLQLGDLEINHATREVTVHGQSLMMTIKSFELLWILASNPQRVFSKTELYEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                 +   ++V I  LR+ L+  +  K   I+TVWG GY + 
Sbjct: 184 QEDFVDDTNTLNVHIHALRQDLAKFSTEKTPTIKTVWGLGYKIE 227


>gi|300854679|ref|YP_003779663.1| putative two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
 gi|300434794|gb|ADK14561.1| predicted two-component response regulator [Clostridium ljungdahlii
           DSM 13528]
          Length = 231

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +D++ +   + L L+ EN+ V+    G   +++ K    D  I+D+ + ++ G++
Sbjct: 3   KILIADDEQEIIELMTLYLERENYEVFGAYDGFSALDILKEGAIDIAIIDIMMPNMDGYQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           +++ +R  K   PV ++S  S I DK+ GL+ GADDYI+KP +  E++AR++A +RR   
Sbjct: 63  LIKKIRE-KYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVMARVKAQLRRCSE 121

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +       IV G+L ++     +      I +T  EY+++ LL        TK+   
Sbjct: 122 FNCNEEKDTETIVVGELKLDTSCCVIYKGDKPISITSTEYKLLLLLMGNPKKVFTKKQIF 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +++     +   I V I KLR K+   +    Y++T+ G GY   
Sbjct: 182 ESVWNEPFYGDDNTIMVHISKLRDKIEEDSKNPVYLKTIRGLGYKFE 228


>gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate
           and phosphorylate sensor [Acinetobacter sp. ATCC 27244]
 gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 236

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 8/232 (3%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+++D+  +   I   L    F     +  +   ++        I+LD  L   
Sbjct: 1   MKDDYILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGG 60

Query: 58  -PGFEVLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRA 114
             G ++ R L+  +     PV +L+     + KV+GL +GADDY++KPF+  ELV+RI+A
Sbjct: 61  VSGVDLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKA 120

Query: 115 IVRRSRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           ++RR+     + +I    L ++  ++ V      + +   EY+++           T+  
Sbjct: 121 VLRRANALSGEKVIDANGLMLDPVSQRVSFGESILDMGPTEYRLLAFFMTHPERAYTRAQ 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+ ++ G    E + IDV I +LRK L    G   +++TV G GY     A
Sbjct: 181 LLDQVWGGNVYIEDRTIDVHIRRLRKVLEP-FGVDRFVQTVRGTGYRFSTRA 231


>gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 220


>gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
 gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum
           KIST612]
          Length = 229

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/219 (31%), Positives = 117/219 (53%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+AL   + L LK++++        ++  E      FD I+LD+ L D  G E
Sbjct: 7   KILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNTFDLIVLDVNLPDGNGLE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    + P+  L+      D V GL++G DDYI+KPF+   L ARI A++RRS+ 
Sbjct: 67  LCQEIRRRS-AVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQK 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q+ I     + + D          + L+  E ++++LL   + TT+T+++ L  ++  
Sbjct: 126 ERQNRIKIDAFTFDFDQMVFLKGEDELTLSKTEQKLLKLLLANRGTTVTRDLLLEKVWGD 185

Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             D  +   + V I +LR KL + +    YI+TV+G GY
Sbjct: 186 SMDFVDENALSVTIRRLRSKLEDNSSKPVYIQTVYGLGY 224


>gi|300694602|ref|YP_003750575.1| two-component transcriptional regulatory protein qseb [Ralstonia
           solanacearum PSI07]
 gi|299076639|emb|CBJ35977.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum PSI07]
          Length = 246

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 17/245 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAI 48
           MR+LL+EDD  +  ++   L+ + F +     GE  ++                  FD +
Sbjct: 1   MRVLLVEDDDMIGDAVRKGLRQDGFAIDWVRDGEAAVQAISSPGAAAAASESGASMFDLM 60

Query: 49  ILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           +LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL
Sbjct: 61  LLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQEL 120

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            AR+ A++RR  G A  L+  G++ +N   + V   G  + L+G+E+ ++  L  R    
Sbjct: 121 AARMHALLRRQGGRADPLMRHGEVLLNPVTREVLRAGMPVKLSGREFAVLHALLSRPGKV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+   A   
Sbjct: 181 WSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREAPTP 235

Query: 229 TCEYL 233
             E  
Sbjct: 236 PAEPA 240


>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
 gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
          Length = 225

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 109/223 (48%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 64  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYRWVDT 223


>gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 219

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ +   +E  L+   F V     G          ++  ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDELIGCGVEAGLRQAGFTVDWARDGHKAGLALDTTQYALVVLDLGLPRVSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R A    PV +L+   ++ D+V GL++GADDY+ KPF+  ELVAR  A++RR++
Sbjct: 61  ELLKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +  LI   +L+VN  A+TV+V   R+ LT +E+ ++  L        ++      LY 
Sbjct: 121 GRSIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++E E   I+V +  LRKKL         I+TV   GYV+ + 
Sbjct: 181 WQEEIESNAIEVHVSNLRKKLGAN-----LIKTVRNIGYVMEKE 219


>gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans]
 gi|133740040|emb|CAL63091.1| Transcriptional regulatory protein OmpR [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 10/227 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF----YEFDAIILDLGLTDIPGF 60
           +IEDD+ LA  +   L    F+V  +    +G++  +       F  ++LDL L D  G 
Sbjct: 1   MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60

Query: 61  EVLRALRVAK---ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
           +V R +R       + P+ +L+      D+V GL+ GADDYI KPF   EL+AR+RA++R
Sbjct: 61  DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120

Query: 118 RSRGHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R      +    +  G L ++LDA+ + +      +T  ++ ++  ++ R    L++E  
Sbjct: 121 RQHTTPATDGHVLRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVLSREQL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ +     E   + IDV I +LR  + +       I TV G GYV 
Sbjct: 181 MDAVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVF 227


>gi|53717560|ref|YP_105537.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|53721677|ref|YP_110662.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|67639687|ref|ZP_00438526.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|76819632|ref|YP_337359.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124383153|ref|YP_001023876.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126447427|ref|YP_001078753.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|126458475|ref|YP_001074902.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278880|ref|ZP_01765593.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722822|ref|ZP_02406058.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
 gi|167741803|ref|ZP_02414577.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
 gi|167818985|ref|ZP_02450665.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
 gi|167827365|ref|ZP_02458836.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
 gi|167848846|ref|ZP_02474354.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
 gi|167897444|ref|ZP_02484846.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
 gi|167905799|ref|ZP_02493004.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
           13177]
 gi|167914106|ref|ZP_02501197.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
 gi|167922015|ref|ZP_02509106.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
 gi|217418866|ref|ZP_03450373.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|226194866|ref|ZP_03790457.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|237510584|ref|ZP_04523299.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242313496|ref|ZP_04812513.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254179219|ref|ZP_04885871.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|254183005|ref|ZP_04889597.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189661|ref|ZP_04896170.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254192765|ref|ZP_04899200.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254204353|ref|ZP_04910710.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|254209237|ref|ZP_04915584.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|254264557|ref|ZP_04955422.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299935|ref|ZP_04967381.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|254356523|ref|ZP_04972798.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|52212091|emb|CAH38100.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|52423530|gb|AAU47100.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
 gi|76584105|gb|ABA53579.1| response regulator protein [Burkholderia pseudomallei 1710b]
 gi|124291173|gb|ABN00443.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|126232243|gb|ABN95656.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|126240281|gb|ABO03393.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
 gi|134249299|gb|EBA49380.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|147744776|gb|EDK51859.1| DNA-binding response regulator [Burkholderia mallei FMH]
 gi|147750460|gb|EDK57530.1| DNA-binding response regulator [Burkholderia mallei JHU]
 gi|148025550|gb|EDK83673.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
 gi|157810251|gb|EDO87421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937338|gb|EDO93008.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694546|gb|EDP84556.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
 gi|169649519|gb|EDS82212.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213538|gb|EDU10581.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398170|gb|EEC38185.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|225932671|gb|EEH28667.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
           9]
 gi|235002789|gb|EEP52213.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|238520280|gb|EEP83741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
 gi|242136735|gb|EES23138.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215559|gb|EET04944.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 220

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 116/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|332559743|ref|ZP_08414065.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332277455|gb|EGJ22770.1| two component transcriptional regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 228

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +G +         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGTDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVRGWS-QVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E + + + V+I +LR KL + A    +I T  G GY  R+
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFRD 227


>gi|300698227|ref|YP_003748888.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum CFBP2957]
 gi|299074951|emb|CBJ54520.1| Two-component transcriptional regulatory protein qseB [Ralstonia
           solanacearum CFBP2957]
          Length = 246

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/246 (30%), Positives = 125/246 (50%), Gaps = 17/246 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE------------FDAI 48
           MR+LL+EDD  +  ++   L+ + F +     GE  ++                  FD +
Sbjct: 1   MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAVGAPGAAAAAAESSASMFDLM 60

Query: 49  ILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL 108
           +LDLGL    G +V+  +R   I+ P+ IL+   ++ D+V GL +GADDY+ KPF+ +EL
Sbjct: 61  LLDLGLPKRDGLDVVHEVRRRGIALPILILTARDAVADRVAGLNAGADDYLVKPFDLQEL 120

Query: 109 VARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
            AR+ A++RR  G A  L+  GD+ +N   + V   G  + L+G+E+ ++  L  R    
Sbjct: 121 AARMHALLRRQGGRADPLMRHGDVLLNPVTREVLRAGVPVKLSGREFGVLHALLSRPGKV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            +     ++LY   +E     ++V+I  LRKKL     G ++I+ + G GYV+       
Sbjct: 181 WSIAQLQDNLYGWDEEVGSNTVEVYIHALRKKL-----GSHFIQNIRGVGYVIPREVPTP 235

Query: 229 TCEYLE 234
             E  +
Sbjct: 236 PAEPAD 241


>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
 gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
          Length = 245

 Score =  247 bits (632), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/228 (30%), Positives = 112/228 (49%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD+ +   +   L  E ++  +   G     +      D +ILD+ L    G  +
Sbjct: 10  LLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLSL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV +L+      D++ GL+ GADDY+ KPFN  EL+ARIRAI+RR +  
Sbjct: 70  CRRLRAQG-DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQAA 128

Query: 123 A-------QSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A       +  I  G L  +LDA++V    G  + LT  E+ ++     R    L+++  
Sbjct: 129 ARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPRRVLSRDQL 188

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVL 221
           L+       +P  + IDV + +LR++LS  A      I+TV   GY+ 
Sbjct: 189 LDWTRGRSADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIF 236


>gi|88797530|ref|ZP_01113119.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
 gi|88779702|gb|EAR10888.1| transcriptional regulatory protein RstA [Reinekea sp. MED297]
          Length = 234

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/231 (29%), Positives = 123/231 (53%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILL+EDD +LA  I   L ++ +++ +   G D + L +  + D ++LD+ L    GF+
Sbjct: 5   HILLVEDDASLATWIADYLTNQGYDITLATNGIDAVTLIRDDQPDLVLLDVNLPGKDGFD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +RV     P+ I++      D+V GL+ GADDYI+KP     L+ARI+ +++R   
Sbjct: 65  VCREVRVFYHR-PILIMTARLEETDEVLGLEMGADDYITKPVRPRALLARIKGLLKRELH 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +   +  G L ++  A+T  +    + ++  E+ ++  L+    T +T+E  L
Sbjct: 124 NPVPDVASDQKLRLGALVIDATARTTTLHDEPVRISSNEFDVLWYLASHAGTIVTREQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +     +   + +DV + ++RKKL  +A   + I+TVWG+GY+L  +A 
Sbjct: 184 KDVRGLEYDGFDRSMDVLVSRIRKKLG-SAEHPDRIKTVWGKGYLLVTDAW 233


>gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum
           255-15]
 gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family
           [Exiguobacterium sibiricum 255-15]
          Length = 222

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/222 (28%), Positives = 117/222 (52%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  +   I   L+++   V  T  G +       + F+A +LD+ +    GF
Sbjct: 1   MKILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMVPGRTGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+   LR +    P+ +L+ +  + DK  G  +GADDYI+KPF+ EELV R+ A+ RR +
Sbjct: 61  ELCALLR-SNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRYQ 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G+++++  ++ + +   R+ +  +E++++  L+       ++E  + H++ 
Sbjct: 120 KAAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                + + +DV I +LR +L         IETV G GY L 
Sbjct: 180 LDFMGDDRTVDVHIKRLRTRLHQTEAIT--IETVRGLGYRLE 219


>gi|15600078|ref|NP_253572.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107103984|ref|ZP_01367902.1| hypothetical protein PaerPA_01005057 [Pseudomonas aeruginosa PACS2]
 gi|218893980|ref|YP_002442849.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|254238396|ref|ZP_04931719.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|254244220|ref|ZP_04937542.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|296391722|ref|ZP_06881197.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
 gi|313109881|ref|ZP_07795813.1| two-component response regulator [Pseudomonas aeruginosa 39016]
 gi|9951159|gb|AAG08270.1|AE004901_12 two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|126170327|gb|EAZ55838.1| two-component response regulator [Pseudomonas aeruginosa C3719]
 gi|126197598|gb|EAZ61661.1| two-component response regulator [Pseudomonas aeruginosa 2192]
 gi|218774208|emb|CAW30025.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
 gi|310882315|gb|EFQ40909.1| two-component response regulator [Pseudomonas aeruginosa 39016]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D ++LD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR      PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLRKKH-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +       I TV G GYV  E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DNPFPNKLIHTVRGIGYVCEERP 223


>gi|255099323|ref|ZP_05328300.1| DNA-binding response regulator [Clostridium difficile QCD-63q42]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +L + +E  ++   F+V V    E+ +++ K   +D ++LD+ L D  GF++
Sbjct: 4   ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSLPDGDGFDI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R A  + P+  L+      + V GL  G DDYI+KPF   EL++RI+A++RR    
Sbjct: 64  CKRVREAS-NVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNFT 122

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +++   + + +++V L    V      + LT  EY+++ LL   KN  LT++  L+ L+D
Sbjct: 123 SENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLWD 182

Query: 181 GR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G     +   + V++ +LR K+ +       + TV   GY  
Sbjct: 183 GNGSFVDDNTLSVYVRRLRNKIEDNPENPKNLLTVRRMGYKW 224


>gi|23010703|ref|ZP_00051302.1| COG0745: Response regulators consisting of a CheY-like receiver
           domain and a winged-helix DNA-binding domain
           [Magnetospirillum magnetotacticum MS-1]
          Length = 240

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ ++  +   L++ +  V +   G +   +      D I+LDL L    G  +
Sbjct: 10  ILVVEDDREISALVARYLRANDCRVSLAGDGREMDRVLADARVDLIVLDLMLPGEDGLSL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+  S   D++ GL+ GADDY+ KPFN  EL+ARIRAI+RR    
Sbjct: 70  CRRLRA-GSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGSE 128

Query: 123 AQS-----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q             ++++  + V   +G RI +TG E+ ++  L LR    L+++  L+
Sbjct: 129 PQDGEGTRRFHFMGWTLDVGLRQVLSPEGARISITGAEFDLLHALCLRPGRVLSRDQLLD 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   P  + IDV + ++R+K+         I T+   GY+    
Sbjct: 189 LTQGRAAGPFERSIDVLVSRIRQKIERDPRNPEIIRTIRSGGYLFAPE 236


>gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
 gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 111/230 (48%), Gaps = 7/230 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  +   +   L      V V     +  ++      D IILDL +    G  V
Sbjct: 17  VLVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLMMPGEDGLTV 76

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR ++ + PV +L+  +   D++ G++ GADDY+ KPF+  EL+ARI+ ++RR+R  
Sbjct: 77  CRELR-SRSNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRRTRTL 135

Query: 123 AQS-----LIVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S      +     +++      +      + L+G EY+++ +L    N  L +   ++
Sbjct: 136 PPSLGDAQQVRFAGWTLDSGARHLISPDNVIVPLSGAEYRLLSVLIQHPNRVLDRNQLMD 195

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                   P  + IDV I +LR +L++ A     I+T+   GY+L  + +
Sbjct: 196 LTLGREATPFDRSIDVQISRLRNRLNDDAREPRIIKTIRNEGYILAAHVE 245


>gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 234

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/232 (25%), Positives = 113/232 (48%), Gaps = 8/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED+  +A  ++  L+   +       G+  +E       D  +LD+ L  + G E
Sbjct: 3   RIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAPPDLTLLDIMLPRLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR  R    + P+ +L+      D++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 63  VLRRARE-HTAHPIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRRTAP 121

Query: 122 HAQSLIVTG-------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +           L ++       ++G  ++LT +E+ ++++LS       ++   
Sbjct: 122 GNVPGVPGQAPQSEGPGLVLDDVHWRASLEGTPLNLTRREFGLLQVLSRHPGRIFSRARL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L   YD   +   + ID  +  LR+KL   +   ++I +V+G G+      +
Sbjct: 182 LELAYDDTVDVTERAIDSHVKNLRRKLGAVSPAHDWIRSVYGVGFAWEAPPQ 233


>gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 1/230 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++EDD  LA ++  +L+   +   V   G  G+   +   +D I+LD+ L    GF
Sbjct: 1   MQILIVEDDVRLARALAHILEENGYGTDVVHDGATGLAWAEVGRYDVIVLDVMLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V+  LR   +STPV +L+   ++ DK+ GL SGADDY++KPF   EL+A +RA+ RR  
Sbjct: 61  SVVADLRRTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL +NL++  +      IHL+ KE+ + ++L       ++K++ +  ++ 
Sbjct: 121 EVLFEKLSAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
                E   ++ ++  LRKK+         IET+   GY    NA+++T 
Sbjct: 181 VESTAEDNNVEAYVSFLRKKMKFLGSSAR-IETLRRAGYRFSVNAEEDTS 229


>gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 248

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L IEDD+  A+ I   L+   F V     G DG+      EFD I LD  L  + G  
Sbjct: 26  HVLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLT 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 86  ILTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQA 145

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +V G L ++L ++     G  I L   EY+++E +      T+T+ M    +
Sbjct: 146 APATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +I+V + +LR+K+ + +  K  I+TV G GY L
Sbjct: 206 WGYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247


>gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
          Length = 227

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 117/226 (51%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + R LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V   G  + L     +++ +L  +    + ++     ++
Sbjct: 121 QGGGRRELSVADLSYDLDTLEVRRAGKSLKLNPIGLKLLAVLMQKSPHVVRRDALEEAVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              D P+   +   + +LR+ + +       + TV G GY L E  
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFPVALLHTVHGVGYRLAEEP 224


>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ +   I    + E   +     G D IE CK   +D II+D+ + ++ GF 
Sbjct: 3   RLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIMMPNLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    STPV +LS      D++ G + G DDY+ KPF+ +EL+ R+ AI++R  G
Sbjct: 63  AVKEIRKD-ASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKRYHG 121

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +    +     L ++  A+ V +      ++ KEY ++  L   +   LT+E  ++ 
Sbjct: 122 DQNTKKKDIYTYEGLKIDFTARKVFIDDKEQEMSPKEYVLLFYLVRNEGIALTREQLIHD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LRK L + +     I T+ G GY   
Sbjct: 182 VWGYDFYGDDRTLDTHIKLLRKSLQDYS---RLIVTLRGVGYRFE 223


>gi|304405929|ref|ZP_07387587.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304345172|gb|EFM11008.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 259

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 122/248 (49%), Gaps = 28/248 (11%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +A  ++  L+ E + V     G + + L      D ++LDL L    G +
Sbjct: 4   KILVVDDEQPIADILKFNLEKEGYEVICAFDGGEAVRLAYEERPDLMLLDLMLPVKDGTD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R   +  P+ +L+   +  DKV GL+ GADDY++KPF+  EL+AR++A +RR + 
Sbjct: 64  VCREVRA-GLQLPIIMLTAKDTELDKVLGLELGADDYVTKPFSTRELLARVKAQLRRQKK 122

Query: 122 HAQ---------------------------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKE 154
            ++                           + +   +L ++ D   V      + LT +E
Sbjct: 123 ASEAVQEAQSAAADAIAGGAAGAAAAEPEKNGLTIFNLFIDTDMYVVYKNNEPLDLTHRE 182

Query: 155 YQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETV 214
           Y+++  L+      +T+E  L  ++      +V+ +DV + +LR+K+ +      YI T 
Sbjct: 183 YELVYYLARNSGKVMTREHLLQAVWGFEYFGDVRTVDVTVRRLREKIEDDPSRPEYIMTR 242

Query: 215 WGRGYVLR 222
            G GY++R
Sbjct: 243 RGLGYLMR 250


>gi|302520395|ref|ZP_07272737.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302429290|gb|EFL01106.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 256

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   + + L+ E + +     G   +   + +  DA++LD+ L D+ G  
Sbjct: 23  RVLVVDDETNLTELLSMALRYEGWEIRTATDGAGAVREVRGFRPDAVVLDMVLPDMDGLS 82

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  +  TPV  L+   +  D+V GL +G D+Y+SKPF+ EE+VAR+R ++RR+  
Sbjct: 83  VLHLMRREQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLIRRAGA 142

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  GDL ++ D+  V   G  IHLT  E++++  L       L+K   L+ ++
Sbjct: 143 GRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 202

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                 +  +++++I  LR+K+    G +  I T  G GY+++ 
Sbjct: 203 SYDFGGQANVVELYISYLRRKI--DRGREPMIHTRRGAGYLIKP 244


>gi|293400684|ref|ZP_06644829.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305710|gb|EFE46954.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/222 (27%), Positives = 118/222 (53%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIED++ +   I   L+     +  +  G++ +++     FD +I+D  L  + G E
Sbjct: 3   KVLLIEDEENIRKIISYDLRKAGHTIVESGDGQEALDIALKQPFDVLIIDWMLPHVSGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ LR   + + + +L+      D +     G DDY++KPF+  EL+AR+ A ++R   
Sbjct: 63  IVQKLRTQHVDSVMIMLTARDDETDILYAFDQGVDDYVTKPFSPRELLARVNAHMKRQSK 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G+L +NL  +   ++   + LT KE+ ++E     KN  L+++  LN ++  
Sbjct: 123 RMEKDLEIGELRINLKRREALLKDELLTLTKKEFDLLEYFVSNKNIVLSRDAILNDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + +I+DV + KLR KL    G   +I++  G GY+L E
Sbjct: 183 DYDGDTRIVDVHVFKLRTKLQ---GSNVHIKSSRGVGYLLEE 221


>gi|308187698|ref|YP_003931829.1| transcriptional regulator [Pantoea vagans C9-1]
 gi|308058208|gb|ADO10380.1| Probable transcriptional regulator [Pantoea vagans C9-1]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  GI+     EF A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDVELGTMLSQYLIAEGFDAQLVLTGSAGIQGALSGEFTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRQ-NSRIPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFE 119

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
               +  A+  +  GDL++N   +  E QG    LT  E+ +++LL    +  ++K+   
Sbjct: 120 EQVPQPDAKEPLRWGDLTLNPATRMSEWQGKTFDLTASEFNLLDLLLRAPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KLS        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLSALTADSINIETVRSIGYRIR 226


>gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
 gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family
           [Clostridium papyrosolvens DSM 2782]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 123/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED K +   +  +L  E F V+    G DG +  K  ++D I+LD+ L    G E
Sbjct: 3   KILVIEDSKDVNSMLSEILTEEGFEVFSAYTGTDGFKEIKENQYDLILLDIMLPYKSGDE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           +L+ +R      PV ++S   +I  K+  L+ GADDY++KPF+  E+VAR+ A +RRSR 
Sbjct: 63  ILKEVRKFS-DVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSRI 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ ++   D++V++D+K + V G  + LT KEY ++ELL   ++   TK      ++
Sbjct: 122 KAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 +   +   +  LR KL  A   + YIETVWG GY L
Sbjct: 182 QEAYLGDDNAVKTHMSNLRSKLKTANAQQEYIETVWGLGYRL 223


>gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 282

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++DD A+   +   L   N N      G    +      FD ++LDL L    G  
Sbjct: 54  RALIVDDDVAIRELLCDYLTRFNINARGVTDGAQMRQALSNETFDVVVLDLMLPGEDGLS 113

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR      P+ +L+      D++ GL+ GADDY++KPF   ELVARI+ I+RR R 
Sbjct: 114 LCRWLRSTS-DIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRD 172

Query: 122 HAQSL---IVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   I      +N   + +    G  + L+  E++++ +   R +  L++E  L+ 
Sbjct: 173 ERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDA 232

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E   + ID+ + +LR+KL +       I+TV G GY+ 
Sbjct: 233 ARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 276


>gi|296135306|ref|YP_003642548.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
 gi|294339408|emb|CAZ87764.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
 gi|295795428|gb|ADG30218.1| two component transcriptional regulator, winged helix family
           [Thiomonas intermedia K12]
          Length = 248

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-----FDAIILDLGLTD 56
           ++LL+EDD  LA  +   L+S  + V                      FDA++LDL L D
Sbjct: 11  QLLLVEDDLRLAQQVSDFLQSAGWQVTHAANAAQAEGELNPRRGDALGFDALVLDLMLPD 70

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G ++ R LR      PV +L+      D+V GL+ GADDY++KPF   EL+AR+RAI 
Sbjct: 71  GDGLDICRRLRT-HSDLPVLMLTARGDPFDRVVGLEIGADDYLTKPFEPRELLARLRAIT 129

Query: 117 RRSRG-------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR  G        A+ ++  G L ++  A+   + G    +T  ++ ++++L+      L
Sbjct: 130 RRRAGSLSPRDPQAEQILRFGRLDIDPAARQARIDGEDRPMTAYQFDLLQVLARHPGRVL 189

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           T+E  L  +     E   + IDV I ++R  + +       I T+ G GYV  ++
Sbjct: 190 TREFLLGAVKGESLEAFDRSIDVHISRIRAAIEDDPRHPRRILTLRGAGYVFTKS 244


>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++   +   + VY    G+D ++       D I+LD+ + +I G E
Sbjct: 4   KILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R   +S P+  L+      DK+ G ++GADDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCNRIR-DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    +     L+++ + + + +  ++I L+ KE+ ++ELLS+       KE   + ++
Sbjct: 122 KSNQTKIKFYNGLTIDYEKRLICIDNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    +I   I K+R KLS      NYIETVWG GY  
Sbjct: 182 GYNSNGNSDVIMEHIRKIRIKLSKHTLE-NYIETVWGVGYKW 222


>gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/228 (27%), Positives = 115/228 (50%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+++ED+  +A  ++  L+   +       G+  ++       +  +LD+ L  + G E
Sbjct: 3   RIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPRLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR  R    S P+ +L+      D++ GL+ GADDY+ KPF+  ELVAR+RA++RR+  
Sbjct: 63  VLRRARE-HTSHPIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRRTEP 121

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A   Q+      L ++       ++G  ++LT +E+ ++++LS       ++   L   
Sbjct: 122 PAERGQARQGMSGLVLDDVHWRASLEGTPLNLTRREFGLLQVLSRHPGRIFSRARLLELA 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           YD   +   + ID  +  LR+KL       ++I +V+G G+     A+
Sbjct: 182 YDDTMDVTERAIDSHVKNLRRKLGAVTPSHDWIRSVYGVGFAWEAPAQ 229


>gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 8/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY+++++
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGYLVQKD 224


>gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 220

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   +S PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|268316556|ref|YP_003290275.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
 gi|262334090|gb|ACY47887.1| two component transcriptional regulator, winged helix family
           [Rhodothermus marinus DSM 4252]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 8/219 (3%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALR--VAKIST 73
           I   L  E + V     GE+ ++     E D I+LD+ L  + G+EV + LR        
Sbjct: 25  IGHFLSEEGYQVEKAYDGEEALKKA-SPEIDLIVLDIMLPGLDGYEVCKRLRSRAETEHI 83

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLS 133
           P+  L+  S  ED+V+GL  G DDY++KP + + L+ARI+A++RR        +   DL+
Sbjct: 84  PIIFLTAKSEEEDQVKGLMMGGDDYLTKPVSPQVLLARIKAVLRRVGVEESRTLKVKDLT 143

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVF 193
           +  D     ++G  + LT  E++++  L        T++  L  ++        + +D  
Sbjct: 144 IYEDEYRASLRGRDLGLTLTEFELLRYLVRHPRKAFTRQELLERIWKDAMMVTERTVDAH 203

Query: 194 ICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           I  LR+KL + A    +I+TV G GY   E  +DE  E 
Sbjct: 204 IKNLREKLGDFA---KHIQTVRGVGYRFVE--EDEPAES 237


>gi|332535571|ref|ZP_08411344.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035028|gb|EGI71547.1| phosphate regulon transcriptional regulatory protein PhoB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 212

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 4/209 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS--T 73
           +  +L+   F     +  +  I        D ++LD  L    G ++ +  +  + +   
Sbjct: 1   MVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGSGIQIAKKFKQNEHTRQI 60

Query: 74  PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-QSLIVTGDL 132
           P+ +L+     EDKVRGL+ GADDY++KPF+ +EL+ARI+A++RR    + +  I    L
Sbjct: 61  PIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRVSPTSLEEAIEVHGL 120

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            ++  +  V  +G+ + +   E++++           ++E  L+H++      E + +DV
Sbjct: 121 RLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHVWGTNVYVEDRTVDV 180

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            I +LRK +    G    ++TV G GY  
Sbjct: 181 HIRRLRKAIGPL-GHDRLVQTVRGAGYRF 208


>gi|217970326|ref|YP_002355560.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|217507653|gb|ACK54664.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 221

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD AL   +   L +E + V +   G DG  L     +DA+ILDLGL   PG 
Sbjct: 1   MRLLVVEDDAALGERLRTRLVAEGYAVDLARDGIDGAHLGATEPYDAVILDLGLPGKPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A    PV IL+      ++V GLQ+GADDY+ KPF+ EEL+ARI+A++RR+ 
Sbjct: 61  TVLREWRAAANRVPVLILTARDGWAERVEGLQAGADDYLGKPFHVEELLARIQALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + +  GD  ++   +  V+  G+   LT  E++++       +  L+K     H+Y
Sbjct: 121 PVPDTELRAGDWRLDEARQCLVDRAGNEQALTATEFRLLRYFMRHPDEVLSKTRLSEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   E +  +I+V++ +LR  L N       IET  G+GYV R
Sbjct: 181 DYDAERDSNVIEVYVRRLRGLLGN-----ERIETRRGQGYVFR 218


>gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 219

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 125/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L ++I  +L+   + V     G++ +   +   +D IILDL L DI G 
Sbjct: 1   MKILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV IL+  +  +DK+ GL  GADDYI+KPF+ +EL+ARIRAI RR  
Sbjct: 61  EVLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAIGRRVS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +++  +L ++L  K V+  G  + LT K Y ++E L   +   ++ E  L+  ++
Sbjct: 121 AEKKDIVLIDNLEIDLKNKVVKKSGKFVELTPKLYCILEQLVRNRGKIVSYETLLSKCWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + P  + +   I  LRK +      K  I+T+ G GY + 
Sbjct: 181 ITEVPSRETMRANIKNLRKLIDPD---KKIIKTIEGVGYRIE 219


>gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8]
 gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855]
 gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8]
          Length = 236

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 13/229 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ L   +E  L+ E F V +   G + +E  + ++ D IILD+ +  + G EV
Sbjct: 13  ILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIEV 72

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--R 118
            + LR      + P+ +L+  +  +DKV+GL  GAD Y+ KP +   +V++ +A++R   
Sbjct: 73  CQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSAH 132

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   I   +L V+ D   V  +       +    KE++++  L+       +++  
Sbjct: 133 RYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQEI 192

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++        + +DV I K+R+K+     G  YIETV G GY ++E
Sbjct: 193 LDEVWGRDVYVVDRTVDVHIRKIREKI-----GSEYIETVKGVGYRMKE 236


>gi|83719681|ref|YP_441198.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83653506|gb|ABC37569.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 291

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 45  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 104

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 105 DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 164

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 165 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 224

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 225 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEK 264


>gi|158318678|ref|YP_001511186.1| two component transcriptional regulator [Frankia sp. EAN1pec]
 gi|158114083|gb|ABW16280.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EAN1pec]
          Length = 219

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA +I   L+     V     G   +EL   + +D I+LD  L  + G 
Sbjct: 1   MRILVVEDEAMLAEAIAEGLRQRAMAVDTCGDGASALELATLHPYDVIVLDRDLPAVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RA+  A   T V +L+    I D+V G   GADDY++KPF   ELVAR++A+ RR+R
Sbjct: 61  DVCRAVVAAGGDTRVIMLTAAGDIADRVHGFGVGADDYLTKPFAFAELVARVQALGRRAR 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + +++    V   G  + L+ KE+ ++E+L     + ++ E  L   +D
Sbjct: 121 AAVPPVLTRAGVELDVPRHQVSRDGRFVPLSRKEFAVLEVLMRADGSVVSAEELLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +P    + + +  LR+KL    G    IETV G GY ++
Sbjct: 181 SNVDPFTNAVRMAVMTLRRKL----GPPPLIETVAGVGYRMK 218


>gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
 gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella
           moribillum M424]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/226 (25%), Positives = 120/226 (53%), Gaps = 2/226 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D+  +    +  L+ + ++V + + G++ +E  K  ++  II D+ + ++ G++
Sbjct: 4   KILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMDGYD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  ++      P   ++  ++  DK+  L  GADDYI KPF+  ELV R++ I+RR   
Sbjct: 64  LISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNILRRIEK 123

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           ++   I T GDL +N  ++   V   ++ LT K ++++ LL+   +   +K      ++ 
Sbjct: 124 NSSENISTLGDLEINYSSRIAMVNDRQLELTVKSFELLWLLANNPDRVFSKTELYEKIWQ 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRENA 225
                +   ++V I  LR+ L+  +  K   ++TVWG GY + +  
Sbjct: 184 DEYVEDANTLNVHIHSLRRILTKYSTKKTPSVKTVWGLGYKMEKQV 229


>gi|312195395|ref|YP_004015456.1| transcriptional regulator [Frankia sp. EuI1c]
 gi|311226731|gb|ADP79586.1| two component transcriptional regulator, winged helix family
           [Frankia sp. EuI1c]
          Length = 219

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/215 (32%), Positives = 115/215 (53%), Gaps = 1/215 (0%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           ED++ LA  +   L  E F V V   G++G+ +     +DAI+LD+ L  + G+ V R L
Sbjct: 2   EDEERLAGLLRGGLAGEGFAVDVAHNGQEGLWMATENRYDAIVLDVMLPLLNGYAVCRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R     TP+ +L+      D+   L +GADD++SKPF+   L+AR+RA++RR       +
Sbjct: 62  REDGNWTPIMMLTAKDGEYDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGRERPVV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +  GDL+V+            I LT KE+ ++  L+ R    ++K   L   +D   + +
Sbjct: 122 LTAGDLAVDPAGLRCRRGETEIALTPKEFAVLHALARRVGEVVSKAELLEQAWDFAYDGD 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             I++V+I  LR+K+ +A  G+  + TV G GY L
Sbjct: 182 PSIVEVYISALRRKI-DAPFGRASLVTVRGAGYRL 215


>gi|295093634|emb|CBK82725.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus sp.
           ART55/1]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 122/224 (54%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I ++EDDK +       LK+  + V   +  +           D ++LD+ L D+ G E
Sbjct: 4   HIYIVEDDKNIREIEMFALKNSGYAVEEFENAKSFFSRSAEKVPDLVLLDIMLPDMDGLE 63

Query: 62  VLRALRVAKIST--PVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ LR    +   P+ +++  ++  DKV+GL  GADDY++KPF   EL++R++A++RRS
Sbjct: 64  IVKKLRSRPDTVRVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRS 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           R       +V GD++++ + + V V G    LT KE+++++LL +     L ++  ++ +
Sbjct: 124 RALQDDKQLVLGDITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E E + +D+ I  LR+KL  A    N I+TV   GY + 
Sbjct: 184 WGTDYEGESRTLDMHIKTLRQKLGEAG---NMIKTVRNVGYKME 224


>gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
 gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM
           18228]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 119/226 (52%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L+ E + V   +  E+ ++L     ++ ++LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLEMEGYQVDTANSAEEALKL-DLPSYNLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   ++  K +   P+  ++   +  D + G   GADDYISKPF+  E++ R++A++RR+
Sbjct: 64  MASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRRT 123

Query: 120 RG---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q  +   DL +++  K V + G  I LT KE++++ LL   +    ++E  L 
Sbjct: 124 ANVQTREQEQLQYRDLVIDIPKKKVTISGEEISLTKKEFEILLLLLQNQGRVFSREDILA 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++        + IDV I +LRKK+ N      YI T  G GY   
Sbjct: 184 KVWHDEVYVLDRTIDVNITRLRKKIGNYG---KYIVTRLGYGYCFE 226


>gi|167827447|ref|ZP_02458918.1| response regulator protein [Burkholderia pseudomallei 9]
          Length = 253

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 22  RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 82  VCRRIRAFS-NVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 140

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 141 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 200

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L     +   + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 201 KQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 253


>gi|28209933|ref|NP_780877.1| transcriptional regulatory protein [Clostridium tetani E88]
 gi|28202368|gb|AAO34814.1| transcriptional regulatory protein [Clostridium tetani E88]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  + + +  ML  + + V     G +     +  +F  I+LDL +  I G 
Sbjct: 10  INILVVEDDTDINNLLCTMLNKQGYKVTSAYSGSEAKMCLEKQDFQLILLDLMIPAISGE 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
            ++  +R  K + P+ ++S     + K++ L+ GADD+I KPF+  E++AR+ + +RR  
Sbjct: 70  NLISEIRKFK-TMPIIVISAKPGQDIKIKVLKLGADDFICKPFDTNEVLARVESQLRRYT 128

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              S+   ++++   DLS+N +   V V+G  I LT +E+ ++ELL   +    TK    
Sbjct: 129 VFSSKNKEKNILTYKDLSLNKETLEVAVKGEYISLTAREFTILELLMSNQKKVFTKANLF 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H ++     +   ++V I  +R KL+       YI TVWG GY + +
Sbjct: 189 EHAWNEDFFCDHNTVNVHISNIRSKLAKINPDIEYIHTVWGIGYKIND 236


>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Roseburia intestinalis
           XB6B4]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I    + E + +     G + +E+C+  +FD IILD+ + ++ GF 
Sbjct: 3   RILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R +R  K   PV +LS      DK+ G + G DDY+ KPF+  EL+ R++ ++ R+  
Sbjct: 63  TCREIRKFK-EIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +     L V+   +TV V G R+ ++ KEY+++  L   +N  L +E  +  
Sbjct: 122 KDVRDGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LR  L      + ++ T+ G GY   
Sbjct: 182 VWGYDYYGDDRTLDTHIKLLRSSLGEY---RKFLVTLRGVGYRFE 223


>gi|260914634|ref|ZP_05921100.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC
           43325]
 gi|260631233|gb|EEX49418.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC
           43325]
          Length = 260

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 104/227 (45%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+I+DD  +   +  + +   + V     G   + L +   F  I LDL L D+ G  
Sbjct: 27  HILVIDDDVQICELLTDIFEEHGYTVVTAQTGTQALSLLQTTHFSLIFLDLILPDVNGLV 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ L+    S PV +LSG+ S  D V GL+ GADDYI+KPF    +VAR +  +RR   
Sbjct: 87  LLQRLKSIS-SAPVIMLSGLDSESDIVVGLEMGADDYIAKPFYPRVVVARAKVALRRHHP 145

Query: 122 H------AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   Q         ++ +   +   Q   I LT  EY ++  L       L++E  
Sbjct: 146 QLFTNPNIQQGFTFNHWVLDTENHKLFSPQKQEIDLTQGEYTLLHALVSHAQKVLSREKL 205

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L   +    E   + IDV I +LRKK+        YI+TV G GY+ 
Sbjct: 206 LELTHSESLEIFDRTIDVLIMRLRKKIEPNPKAPTYIQTVRGMGYLF 252


>gi|206559345|ref|YP_002230106.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198035383|emb|CAR51259.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 242

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGIDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 220


>gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    +P   +IDV + +LRKK+         I+TV G GY+L
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKIDPPGANP-MIQTVRGSGYML 223


>gi|188534447|ref|YP_001908244.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
 gi|188029489|emb|CAO97366.1| Putative transcriptional regulator [Erwinia tasmaniensis Et1/99]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K + H + + L+ E F +   +  + G+      +   +ILDLGL D  G + 
Sbjct: 4   ILIVEDEKEIRHFLRVALEGEGFRIVDAETLKRGLIEAATRKPQLVILDLGLPDGDGSQF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R +R    + PV +LS  S  +DK+  L +GADD+++KPF   EL+AR+R  +R    +
Sbjct: 64  IREIRQWS-TIPVIVLSARSDEQDKIAALDAGADDFLTKPFGVGELLARVRVALRHHPQN 122

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +S    I  G +SV++ A  V   G  +HLT  E++++  L       +T+   L  ++
Sbjct: 123 GESGQAQIGFGSVSVDIAAHRVTRNGEALHLTPTEFRLLVSLLNHPGKVMTQRQLLMLVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        ++ T  G GY  
Sbjct: 183 GPNAVEHHHYLRIYMGHLRQKLEQDPARPQHLLTEIGVGYRF 224


>gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
 gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 118/225 (52%), Gaps = 3/225 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL++D+  +   + L L    +         D I   + +  D I+LD+ + ++ G
Sbjct: 1   MKTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSVDLILLDVMMPEMDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   + ++  +   P+ +L+  S   D V+GL+ GADDYI KPF++EEL+ARI A++RR+
Sbjct: 61  WTACKEIKKFR-DIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLRRT 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +     ++    L +  +A  +  +   I LT KE+ M+ L    +N   +++ F+  ++
Sbjct: 120 QSSEDGILSFKGLVLKQNAYELLFENKEILLTPKEFAMMGLFLRNRNKVFSRDHFIASVW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLRE 223
                 E + ID  +  LR+KL  A     ++++TVWG GY   E
Sbjct: 180 GDGVTIEDRTIDSHVRNLREKLRKAGFPADDHLQTVWGVGYKWTE 224


>gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 217

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 125/223 (56%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD A+A+ I+L L + N+   V   GE+ + + +   FD I+LD+ L  + GF
Sbjct: 2   IKILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVMLPKVDGF 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   ++      PV  L+  SS+ DKV GL++G DDY++KPF   EL+ARI  ++ R  
Sbjct: 62  TLFEKIKPLG--IPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVL-RHY 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               ++I   D  V L+   V+  G  I LT KE++++  L   KN  LT+E  +  ++ 
Sbjct: 119 NKKSNIINFKDTEVYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + ID  I KLRKKL    G K+ I+TV+  GY L E
Sbjct: 179 YDYVGETRTIDNHIQKLRKKL----GWKDEIKTVFKLGYRLEE 217


>gi|83716824|ref|YP_439933.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|167578456|ref|ZP_02371330.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167616593|ref|ZP_02385224.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257143098|ref|ZP_05591360.1| DNA-binding response regulator [Burkholderia thailandensis E264]
 gi|83650649|gb|ABC34713.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 240

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 69  VCRRIRGFS-NVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GAPVDSPASEALVFGELTISPPNRTVTWRGEPVDLKTAEFNLLLILARSAGTVLSRDDIL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L     +   + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGLDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 227

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE GIEL +   +D ++LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGIELFERNYYDVVLLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ +++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                      D+ ++L AK V +    I+LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDLDS---KYIHTIRGFGYMFQ 223


>gi|319944530|ref|ZP_08018801.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
 gi|319742243|gb|EFV94659.1| DNA-binding response regulator [Lautropia mirabilis ATCC 51599]
          Length = 252

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 18/236 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+  LA  +   L +  F   +   G   +   +    D ++LDL L    G +
Sbjct: 15  QLLVVEDEPKLAVLVCRYLDAAGFQTGILADGRLVVNAVRTNPPDLVLLDLMLPGRDGID 74

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + R +R    S P+ +++      D++ GL+ GADDYI KPF+  E+VAR+RA++RR+  
Sbjct: 75  ICREIRTFS-SVPIIMMTARVEEIDRLLGLELGADDYICKPFSPREMVARVRAVLRRTLA 133

Query: 120 ---------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLR 164
                             A        L ++       ++G  + LT  E++++ +L+  
Sbjct: 134 DAVKPQQKAVAEAVLEKPADVSPPPDGLWIDTVRHAAWLEGSPLELTPVEFRLLSVLAAM 193

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                ++E  L  LY+       + +D  +  LR+K+       + I++V+G GY 
Sbjct: 194 PGHVFSREDLLERLYEDHRVVNGRTVDTHVKNLRRKMGRILPDSDLIQSVYGMGYK 249


>gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657]
 gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf]
 gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+  ++ L+L+SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR+ +R+S G
Sbjct: 63  VCTEIKETQ-DIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
           H+ S      + V++ +  V+  G  + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 121 HSPSAFEILGIHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRSRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +      + V+I +LR+K+ N       I T+ G GY L +
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENNPASPQIILTIRGTGYKLGD 223


>gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis
           X14]
 gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family
           [Nitrobacter hamburgensis X14]
          Length = 221

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 126/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V     GED   L    ++ A+ILDLGL  + G 
Sbjct: 1   MRVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAWFLGDTEDYGAVILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV +L+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S++  G+++++     V  +G  I L+  EY++I  L   +   ++++    ++Y 
Sbjct: 121 GHGSSVMTAGEITLDERQMKVTRRGVPIALSPLEYRLIAHLLRNRGRVVSQQELDENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   ++V + ++RKKL         IET  G GY++ E
Sbjct: 181 HGEEHDSNTLEVLVGRVRKKLGAD-----VIETRRGFGYLMPE 218


>gi|116053034|ref|YP_793353.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115588255|gb|ABJ14270.1| two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD      ++  L    + V  +  G DG+ L     +D ++LD+ L  + G+
Sbjct: 1   MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR      PV  L+    ++D++RGL+ GADDY+ KPF+  EL+ RIR ++RR  
Sbjct: 61  QIMEVLRKKH-DVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGV 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +++  + V  QG  I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREAEQVQLADLHLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +  ++DV I +LR K+ +       I TV G GYV  E  
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKV-DNPFPNKLIHTVRGIGYVCEERP 223


>gi|326794087|ref|YP_004311907.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326544851|gb|ADZ90071.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 227

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 10/225 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           + +IED+  +A  +   L    ++V +   GE+ +        D +ILD+ L  + GFE+
Sbjct: 4   VYIIEDEIKIAEILSDYLIKYGYDVQLFHSGENAVTEIVKGNPDLVILDVMLPAVGGFEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
              LR      P+ +L+      D++ GL  GADDY+ KPF   E+VAR+ AI+RR    
Sbjct: 64  CHQLRAMDNEVPIIMLTARVDESDRLEGLNIGADDYVCKPFLPNEVVARVNAILRRIKKS 123

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +     +LI   +++++++     V G  I LT  E +++  +  R     ++E+ +
Sbjct: 124 QASASNEPTTLISYRNITIDIEKYLCFVSGVEIELTSVELKLLHTMMTRPKRIFSREVLM 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +  YD       + ID  +  LRKKL    G  + I+TV+G GY 
Sbjct: 184 DMCYDDDRVVNDRTIDSHMRNLRKKLG---GSDSVIQTVYGVGYK 225


>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 125/225 (55%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L +  F+V     G   +      + + ++LDLGL D+ GFE
Sbjct: 3   RVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR    + PV +LS  +   +KV  L +GADDY++KPF  +EL+AR+RA VRR   
Sbjct: 63  VLAGLR-GWTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAR 121

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           ++G  + ++VT   +V+L AK V   G  +HLT  E+ M+ELL   +   ++++  L+ +
Sbjct: 122 TQGEGEPVVVTDSFAVDLVAKKVTKDGAEVHLTPTEWGMLELLVRNQGKLVSQKDLLSEV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    + E   + V++ +LR+KL        ++ T  G GY    
Sbjct: 182 WGPSYKTETHYLRVYLAQLRRKLEADPAHPRHLITEAGMGYRFEP 226


>gi|332526126|ref|ZP_08402264.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332109969|gb|EGJ10597.1| two component transcriptional regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+A  I + L+   + V V    +           D +++D  L    G ++
Sbjct: 4   VLVVEDESAIAELISINLRHAGYEVTVAATADQAQAAVDRVLPDLVLVDWMLPGQSGLQL 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R  R    +   P+ +L+  +   DK+ GL +GADDY++KPF+ +EL+AR+RA++RR  
Sbjct: 64  ARRWRAETRTREIPIIMLTARNEEADKIAGLDAGADDYLTKPFSPKELLARMRAVLRRKA 123

Query: 121 GHA-QSLIVTGDLSVNLDAKTVE--VQGH--RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A  S +    L ++   + V   V G    + +   E++++  L        ++   L
Sbjct: 124 PEALDSPVEVAGLRLDPATRRVTRRVDGELREVKMGPTEFRLLHFLMTHPERVHSRAQLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++      E + +DV + +LR+ L+ A      IETV G GY + + 
Sbjct: 184 DRVWGDHVFIEERTVDVHVKRLREALAPAQCSA-LIETVRGAGYRMTQQ 231


>gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 9/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ A+A +I   L ++        LG   +E  +   FD ++LD+GL DI GFEV
Sbjct: 6   ILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALERLREARFDLVVLDVGLPDINGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+R I+RR    
Sbjct: 66  CRTLRTF-TDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNRP 124

Query: 123 AQSLIVTG--------DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           A      G           ++ D   +   G  ++LT  E+ ++ LL        +++  
Sbjct: 125 AAQPRAQGPGTPDVAQGFELDADGARLAWLGQTLNLTRYEFGLLALLVRHPGRIYSRDQL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++ ++    +   + +D  I  LR KL      ++ I T  G GY L+ 
Sbjct: 185 MDLVWRDAIDTTDRTVDTHIKTLRAKLRAIDPARDPIRTHRGMGYSLQP 233


>gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1]
 gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1]
          Length = 221

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+ EDD  L  +I  +++ E   V   D G+  +E   F  +D +ILD  + ++ G 
Sbjct: 1   MKILIAEDDNRLRKNIVHIIQKEFHQVDAVDNGQHALEYILFQTYDLVILDWMMPELSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V +  R       + IL+      D + GL +GADDY+ KPF  EEL+ARIRAI+RR  
Sbjct: 61  DVCKEARRNGYEGGILILTAKDDSNDIILGLDAGADDYVVKPFKMEELLARIRAILRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I   DL + LD++T+      I LT  E+ ++E L + K   LT+E     ++ 
Sbjct: 121 KSIHQIIQIDDLKLYLDSRTLYKDNQEILLTKNEFLLLEYLFINKGIVLTREQIYTQVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E     +D  +  +RKK+ +    K+ IE + G GY +R
Sbjct: 181 FDHEMTNNNLDALVKLVRKKI-DYNRSKSIIENIRGIGYRVR 221


>gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO
           3283-12]
          Length = 243

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +A  I   L +  F V     G  G+E     E D +++D  L  + G  V
Sbjct: 22  VLLVEDDGTIAEEIAAELTARGFKVLHEATGNAGLEAALRLEADIMVVDRLLPGLDGLSV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   I  PV +LS +S+++D+V GL++G DDY++KPF  EELVARI A++RR    
Sbjct: 82  IETMRQQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + ++L  + V   G  I L  +E++++E L  R    LT+ M L  ++  R
Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P   ++DV I KLR+K+ +  G +  IE++ G G+ LR
Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240


>gi|170760372|ref|YP_001786057.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407361|gb|ACA55772.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 232

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 5/225 (2%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ I  +EDD +L + +   +K + + + V  +  +   L K  ++D +ILD+ L D  G
Sbjct: 1   MKHIFFVEDDLSLINGLSFAIKKQGYEIDVARISLEAEALWKNGKYDLVILDVSLPDGSG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +++ + +R      P+  L+      D + GL  G DDYI+KPF     ++RI A++RRS
Sbjct: 61  YDLCKKIRKTS-KVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRS 119

Query: 120 R--GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                A + + +  ++V L    V   G ++ LT  EY+++ L     +  L+ E  L+ 
Sbjct: 120 NNFNQADTELNSNGINVQLLKGEVYKNGEQLDLTASEYKLLCLFMENPDIVLSPEQILSR 179

Query: 178 LYD-GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           L+D   +  +   + V+I +LR K+ +  G    I TV   GY  
Sbjct: 180 LWDCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRCMGYKW 224


>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
 gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
           [Geobacter lovleyi SZ]
          Length = 235

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 110/224 (49%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+L+ED+  LA  I   L+ + + V   D GE  +E  +    D IILD+ L  + GF+
Sbjct: 7   RIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVMLPGMDGFQ 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V +A+R      P+ +L+  S   D+V GL+SGADDY++KPFN  E + R++ ++RRS  
Sbjct: 67  VCKAMRELDSRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRSSW 126

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 +     G   V L +   +     I LT  E +++ L   R+   + +   L  
Sbjct: 127 YRPDPVEEGYQFGVNEVYLLSYRAKTAQGEIDLTEMEVRVLALFFQREGQVIPRGELLES 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    + E + +D FI +LRK          +  TV G GY  
Sbjct: 187 VWGYSSDTETRTLDNFIVRLRKYFEPDPTRPTHFLTVRGVGYRF 230


>gi|15605840|ref|NP_213217.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
 gi|2982999|gb|AAC06611.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI LIEDDK LA  ++L L+ E F V   +      +       D I++D+ L D+ GF 
Sbjct: 7   RIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSVDLILIDIMLPDLDGFR 66

Query: 62  VLRAL--RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L  R      PV  ++     EDK++G + GADDYI+KPF+ +EL+AR+RA+++R 
Sbjct: 67  IANFLKSRADLKEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRY 126

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  ++S  +    + ++ + + + V G  ++LT  E+++++ L       +++   +  L
Sbjct: 127 KKVSESKVLKYEGVELDTERQKLFVDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKL 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   E   + IDV +  +R KL    G    I+TV G GY   
Sbjct: 187 WDYERETTERAIDVHVKHIRDKLGKYKG---LIKTVRGVGYKFE 227


>gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator
           [Ruminococcus albus 7]
 gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family
           [Ruminococcus albus 7]
          Length = 227

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI ++EDD+ ++  ++ +L+S  +       G++   L K   FD +++DL L    G  
Sbjct: 4   RIAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGER 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  LR ++  TPV ++S  S +E K+  L+ GADDYI KPF+ +E++ RI  ++RRS  
Sbjct: 64  LIGELR-SRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGA 122

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ ++  GDLS+N +  TV   G ++ LT KE+ +++L         TK      +++
Sbjct: 123 FAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWN 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                E   I+V +  LR KL     GK++IETVWG GY L+
Sbjct: 183 EVYYYEDNTINVHVSNLRSKLKKV-SGKDHIETVWGIGYRLK 223


>gi|270261000|ref|ZP_06189273.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270044484|gb|EFA17575.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 223

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 119/220 (54%), Gaps = 2/220 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD +    ++  L    ++V +   G DG+     + +DAI+LD+ L  + G+
Sbjct: 1   MRILVIEDDISTGDYLKKGLGEAGYSVDLARNGTDGLFRALEHGYDAIVLDVMLPGLDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  LR  K   P+  L+    ++D++ GL+ GA+DY+ KPF+  ELV RIR ++RR  
Sbjct: 61  QIVEVLR-KKSDVPILFLTARDGVQDRIHGLELGAEDYLIKPFSFTELVLRIRTLLRRGT 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     DL +++  +    Q   I LT KE+ ++ LL  R+   L++ +  + ++D
Sbjct: 120 VREADHYSLADLQLDVLRRKAVRQDVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + +  ++DV I +LR K+ +       I TV G GYV
Sbjct: 180 MNFDSDTNVVDVAIKRLRAKI-DRPFAIKLIHTVRGIGYV 218


>gi|255525555|ref|ZP_05392490.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|255510739|gb|EET87044.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+EDD++L   I   L  E   V+     E+G E+      D IILD+GL D  G
Sbjct: 1   MKNILLVEDDESLNRGISFKLNKEGMKVFAAKNLEEGREIFNNTSLDLIILDIGLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           FE    +R       +  L+      D V GL  GADDYI+KPF+   L+++I A++RR+
Sbjct: 61  FEFCSEIRKQSG-VLIIFLTACDEEVDIVTGLDMGADDYITKPFSFMVLMSKINALLRRN 119

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S IV+G ++   +   V     +I L+  E ++++ L L     + KE  LN L+
Sbjct: 120 SSSNSSKIVSGSIAFYPEEMKVLKDEKQIDLSKTELRLLKYLMLNSGQIIKKEQLLNELW 179

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D   D  +   I V I +LR+K+        YI+TV G GY+  E
Sbjct: 180 DLDGDFVDSNTIAVNIRRLREKIEVNPSKPKYIKTVRGIGYIWSE 224


>gi|253681042|ref|ZP_04861845.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
 gi|253562891|gb|EES92337.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium botulinum D str. 1873]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 7/233 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTDIP 58
           + ILLIEDD  L+  ++  L+SE F ++  D  E   +  K        I+LD+ L D  
Sbjct: 2   INILLIEDDITLSMGMKYALESEGFIIHTADSVESAKDSLKNLANVLKLILLDIMLPDGN 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+++ + +R   ++ P+  L+      + + GL  G DDYI+KP    EL++RI A++RR
Sbjct: 62  GYDLCKYIRSKNLNIPIIFLTACDEEANIILGLDLGGDDYITKPVRIRELISRINAVLRR 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               S   ++ +I + DL +      +      I LT  EY+++  L       LT++  
Sbjct: 122 NSILSPPTSEHIITSKDLKLYPLKCKLLKHQEEISLTSIEYKLLLTLMSNSGNILTRDTL 181

Query: 175 LNHLYDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+D   D  +   + V+I +LR+K+ +     +YI T  G GY   E  +
Sbjct: 182 LEKLWDLDGDFIDNNTLSVYIRRLREKIEDNPKSPSYILTQRGIGYKWNEPVE 234


>gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
 gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Slackia heliotrinireducens DSM
           20476]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++EDD  LA +++ +L+   + V +   G+ G +      +D +ILD+ L  + GF
Sbjct: 1   MQVLIVEDDVRLASALKHILEDNGYLVDMVHNGQSGYDYAVAGIYDVVILDVMLPKMNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+ +LR A + TPV +L+   +I DK+ GL SGADDY++KPF+  EL+A +RA+ RR  
Sbjct: 61  EVVASLRRANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDLS+NL++  +      I+L+ KEY++  +L       ++KE  ++ ++ 
Sbjct: 121 QVVFEKLEAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                +   ++ +I  LRKKL    G    I+TV   GY L  + 
Sbjct: 181 VESTADDNNVEAYISFLRKKLK-FLGSSVSIDTVRRVGYKLNVDG 224


>gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
 gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272]
 gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273]
          Length = 216

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLTAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTKET 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 ETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 215


>gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum 5521]
 gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDDK + + I L LK+  +N      G +G+ L    + D ++LDLGL D  G E
Sbjct: 5   RILIIEDDKYILNFISLSLKTSGYNFQCASTGLEGLSLFYSNKPDIVLLDLGLPDSDGIE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR---R 118
           +++++R      P+ ++S      DK+  L SGADDY++KPF+  EL+ARIR + R   R
Sbjct: 65  IIKSIREIS-ECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMNR 123

Query: 119 SRGHAQSLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   +  +   D L+++ + + V V  + IHLT  EY+++ L+   K   LT    L  
Sbjct: 124 DKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILKE 183

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++   +  + K I VF+  LR+K+        +I T  G GY   ++
Sbjct: 184 VWGYGENGDSKSIRVFMASLRRKIEKNTAKPRFILTEVGIGYRFADD 230


>gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630]
 gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196]
 gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291]
 gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium
           difficile]
 gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196]
 gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++  K   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S  
Sbjct: 63  ICTEIKE-KQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
              +  + G L V+     V+  G+ + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 122 FGSTFEICG-LYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ +       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|15597719|ref|NP_251213.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
 gi|107101969|ref|ZP_01365887.1| hypothetical protein PaerPA_01003016 [Pseudomonas aeruginosa PACS2]
 gi|116050466|ref|YP_790715.1| putative two-component response regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984654|ref|YP_001348074.1| putative two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218891499|ref|YP_002440366.1| putative two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254235520|ref|ZP_04928843.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|254240954|ref|ZP_04934276.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|296389055|ref|ZP_06878530.1| putative two-component response regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313107420|ref|ZP_07793610.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
 gi|9948578|gb|AAG05911.1|AE004679_5 probable two-component response regulator [Pseudomonas aeruginosa
           PAO1]
 gi|5921515|emb|CAB56468.1| czrR protein [Pseudomonas aeruginosa]
 gi|115585687|gb|ABJ11702.1| putative DNA-binding heavy metal response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126167451|gb|EAZ52962.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719]
 gi|126194332|gb|EAZ58395.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192]
 gi|150959812|gb|ABR81837.1| probable two-component response regulator [Pseudomonas aeruginosa
           PA7]
 gi|218771725|emb|CAW27499.1| probable two-component response regulator [Pseudomonas aeruginosa
           LESB58]
 gi|261411913|gb|ACX81358.1| CzcR [Pseudomonas aeruginosa]
 gi|310880112|gb|EFQ38706.1| putative two-component response regulator [Pseudomonas aeruginosa
           39016]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 122/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+   A  +   L    + V   + G DG+ +   + ++ +ILD+ L  I G+
Sbjct: 1   MRILIIEDEVKTADYLHQGLTESGYIVDRANDGIDGLHMALQHPYELVILDVNLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    S  V +L+G   + DKVRGL  GADD++ KPF   EL+AR+R+++RR  
Sbjct: 61  DLLRRLRERS-SARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHD 119

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q ++   DL ++           RI+LT KE+ ++ LL  R    +T+   ++ ++
Sbjct: 120 QAPMQDVLRVADLELDASRHRAFRGRVRINLTTKEFALLHLLMRRNGDVITRTQIISLIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   + +  +++V IC+LR K+ +       I T+ G GYVL 
Sbjct: 180 DMNFDNDSNVVEVAICRLRAKI-DDGFDLKLIHTIRGVGYVLE 221


>gi|223982492|ref|ZP_03632731.1| hypothetical protein HOLDEFILI_00005 [Holdemania filiformis DSM
           12042]
 gi|223965517|gb|EEF69790.1| hypothetical protein HOLDEFILI_00005 [Holdemania filiformis DSM
           12042]
          Length = 239

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 115/227 (50%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  + + I  +L +E F        +  + L     +D ++LDLGL D  G +
Sbjct: 7   RILIVEDDPQIRNFISYVLSAEGFASDNAATAQSAMTLLAANVYDLMLLDLGLPDYDGMD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V+R +R      P+ ++S     ++K + L +GADDY++KPF+  EL+ARIR  +R +  
Sbjct: 67  VIRKVREWS-EIPILVVSARDQDQEKAQALDAGADDYLTKPFSTTELMARIRVAIRHAFR 125

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q ++   +LS++L+ + V ++G  +HLT  EY ++ L        LT    ++ 
Sbjct: 126 QNTAAVQKVLTVRELSLDLEKRQVTLRGQPLHLTPMEYNLLSLFLRNSGKVLTTRYLISA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++      + + +   +  LR+K+        YI T  G GY L E 
Sbjct: 186 IWGSGYGEDTQALRALMAGLRRKIEENPAKPRYIVTEIGVGYRLVEQ 232


>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
 gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
           [Ruegeria sp. TM1040]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +       ++   F       G   I   +    D ++LD+GL +  G E
Sbjct: 4   RILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +    P+  L+      D++ GL+ GADDY++KPF+  ELVARI+AI++RS  
Sbjct: 64  VCRDIRKSS-DVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTP 122

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +  G L ++ +       G  + LTG E++++++L  R +  LT+   +  L
Sbjct: 123 SITQLPTALTHGALELDAERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEAL 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           Y        + ID  I  +R K+S   G    + TV G G  LR  A  +T
Sbjct: 183 YGFNIHVSDRTIDSHIRNIRAKMSEV-GCTEAVVTVHGVG--LRMGACQQT 230


>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++DD  + + +   L+ E+F+ Y    GE+ +     ++ D  I+D+ +  + GFE
Sbjct: 3   RCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMHGMDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++      PV +L+   ++ DK R   SG DDY++KPF  +EL+ RI+A++RR   
Sbjct: 63  LCHMIKED-YDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRRYHI 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    +  G+L+++     V V G  + L  KE+Q++ LL+  +    ++   +  ++  
Sbjct: 122 HTDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWGY 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E + + IDV I +LR++L         I+TV G+GY + 
Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSN-VTIKTVRGQGYKVE 221


>gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
 gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei
           F0204]
          Length = 221

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 125/221 (56%), Gaps = 4/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD A+ HS++  L  E F+       ++  +L K  ++  ++LD+ L D  GF 
Sbjct: 3   KILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKDGDGFA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V       KI  PV  LS  S  E  VRGL  GADDYI+KPF  +EL++RI+ ++RR  G
Sbjct: 63  VCNM--AQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H Q++I+  ++ V+++   V+ +   I+L+  EY+++ L    +   LT++  L+ +++ 
Sbjct: 121 H-QTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNI 179

Query: 182 -RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D      I V+I +LR+K+ +       I+TV G GY +
Sbjct: 180 AGDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGYRM 220


>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L++  F       GE+ + L   +  DA++LD+ +    GF V
Sbjct: 6   VLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQDGFAV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R      P+  L+ +    DKV+GL+ G DDYI KPF+  EL+AR+ A++RR +  
Sbjct: 66  CARIREQS-DVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124

Query: 123 AQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++   +  GDL+++   +TV V G  + LT KE++++  L+  +    +++  L  ++ 
Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGLVFSRDDLLVKVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  LR KL +AA    +I+TVWG GY   
Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAA---RHIQTVWGIGYKFE 223


>gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
 gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium
           prausnitzii A2-165]
          Length = 229

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD A+    +  L+S  + V   +  E   +  +  E + +ILD+ L    GF +
Sbjct: 2   IYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLPGEDGFSI 61

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ LR        P+ +++  SS  D VRGL  GADDYI+KPF   E ++R+RA +RRS 
Sbjct: 62  LKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRRSA 121

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               Q++    ++ ++    +V V G  I LT KEY ++ LL    N  +T+E  L  ++
Sbjct: 122 PEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQVVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                 E + +D+ I  LRKKL +A     YI TV   GY L +N + E
Sbjct: 182 GTDISVESRTVDMHIRTLRKKLGDAG---RYICTVRKVGYKLADNEEGE 227


>gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 70/233 (30%), Positives = 115/233 (49%), Gaps = 18/233 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L +EDD  +  + +L L+ + F V     G  G+E  +    D  +LD+ +  + G  
Sbjct: 6   HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRSRRPDIALLDVMVPGLDGVS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R    + PV +LS  +   D V GL++GADDY++KPF+   LVARIRA++RR   
Sbjct: 66  LCRRIRDES-NVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124

Query: 119 ---SRGHAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
               RG           +  G+L V+     V   G  + LT  E +++   S    T L
Sbjct: 125 AGGMRGEEDDPAAEGGVLTFGELEVDTGGMEVRRSGRPVSLTPTEMRLLLEFSAVPGTVL 184

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +++  L  ++D     + +++DV + +LR K+         IETV G GY L+
Sbjct: 185 SRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIETVRGFGYKLK 232


>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
 gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
           domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
           19718]
          Length = 223

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +A  I+  L +  + V V           +   FD  ++D+GL DI G 
Sbjct: 1   MRILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR  K+  PV +L+   S+ED + GL  GADDY++KPF   EL+ARIRA++RR+ 
Sbjct: 61  TLVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +    L +N  + T  +    + LT +E+ ++E L +     ++K+  L +L  
Sbjct: 121 SITSTELQHDRLVLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                    I+V + +LR K+  A GG   I TV G GY + ++
Sbjct: 181 WDKNITPNAIEVHVSRLRAKI--APGGIE-IRTVRGIGYRIDQS 221


>gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
 gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001]
          Length = 243

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 1/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD  +A  I   L +  F V     G+ G+E     E D +++D  L  + G  V
Sbjct: 22  VLLVEDDSTIAEEIAAELTARGFKVLHEATGDAGLEAALRLEADVMVVDRLLPGLDGLSV 81

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  +R   I  PV +LS +S+++D+V GL++G DDY++KPF  EELVARI A++RR    
Sbjct: 82  IETMRQQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPFAIEELVARIEALLRRPDDT 141

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
             + +  G + ++L  + V   G  I L  +E++++E L  R    LT+ M L  ++  R
Sbjct: 142 RSTKLHLGPIDMDLIERRVWRDGREIELLPREFRLLEYLMRRPGQVLTRSMLLEDVWQYR 201

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             P   ++DV I KLR+K+ +  G +  IE++ G G+ LR
Sbjct: 202 FIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIRGTGFRLR 240


>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
 gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
          Length = 249

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/233 (30%), Positives = 110/233 (47%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++DD  +   +   L    F V     G +   +   +  D IILDL L    G  
Sbjct: 6   HLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLMLPGEDGTS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R+LR  K  TPV +L+ M S  D++ GL+ GADDY+ KPF+  EL+ARIRAI+RR  G
Sbjct: 66  LCRSLRA-KSGTPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRRCGG 124

Query: 122 HAQSL-----IVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +      +     S++   + +       +HL+  EY ++  L  R    + +   L
Sbjct: 125 PEPARERPRVLGFAGWSLDQGRRELRTPDRVVVHLSQGEYALLGTLLERAPQVVERTELL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                    P  + ID+ I +LR+KL    GG   I+TV G GY       D+
Sbjct: 185 EKHRGDTSIPFDRSIDIQISRLRRKLEEGPGGSGLIKTVRGIGYQFTATVVDQ 237


>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
          Length = 225

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWIDTEQ 225


>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
 gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 124/224 (55%), Gaps = 9/224 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S + +L+ + F+V   + G DG++  + Y FD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGA 122

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +    L ++ D    + +G  I L+ +E+ ++  L    N   +K      
Sbjct: 123 LKQQKQSQTLSYAGLELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEEK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LYD   E     I+V+I  LR KL     GK++I T+ G GY L
Sbjct: 183 LYDLDSEINSNTIEVYIHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 225

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/220 (26%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQR 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|126700980|ref|YP_001089877.1| two-component system response regulator [Clostridium difficile 630]
 gi|115252417|emb|CAJ70259.1| Two-component response regulator [Clostridium difficile]
          Length = 237

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +ILL++D+K +   IE +L ++ F N+     G D I LCK    D +ILD+ L DI G 
Sbjct: 8   KILLVDDEKDIVDLIEEVLINDGFKNIIKAYNGLDAISLCKIACPDVVILDIMLPDIEGI 67

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R     + +  LS  +   DK+ GL SG DDYI+KPF+  E+  R++A +RR +
Sbjct: 68  EVCKKIREFSYCS-ILFLSSKNDDIDKILGLSSGGDDYITKPFSPREIAFRVKAQLRRQQ 126

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +       +I  GD++++++   V    + I LTG+EY ++  ++   N  + KE   
Sbjct: 127 YQSIVPSDSEVIKIGDITIDIEGNRVYKDINEIELTGREYHLLSYMAQNVNKIIGKERLY 186

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++          I V I  +R+K+ +       + TV G GY L 
Sbjct: 187 EQVWGVYSSICDNTIMVHIRHIREKIEDNPSNPKILITVKGLGYKLV 233


>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
 gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 63/225 (28%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL++D++ + + + L L+   +       G + I+L K    D ++LD+ + ++ G
Sbjct: 1   MKTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            E  R +R    + P+ +L+  +   D ++G   GADDY++KPF++  L+AR+ A+ RR 
Sbjct: 61  LETCRKIREFS-NVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQ 119

Query: 120 R-GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +  H    ++ GD  +++D+ T++ +G  + LT KE+ ++E L        T++  L   
Sbjct: 120 QIQHGAKEVIRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVA 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           +D     E++ +D  +  LR+KL   +   + ++ TVWG GY  +
Sbjct: 180 WDINASTEIRTVDSHVRNLREKLKGASFPIEEHLATVWGIGYQWK 224


>gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 248

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L IEDD+  A+ I   L+   F V     G DG+      EFD I LD  L  + G  
Sbjct: 26  HVLTIEDDEITANEIVTELEGRGFTVEWVANGRDGMARALGNEFDVITLDRMLPVVDGLA 85

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 86  ILTTMRSVGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQA 145

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 + +V G L ++L ++     G  I L   EY+++E +      T+T+ M    +
Sbjct: 146 APATFDTTLVVGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAV 205

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +I+V + +LR+K+ + +  K  I+TV G GY L
Sbjct: 206 WGYHFDPGTNLIEVHMGRLRRKI-DPSDAKQMIQTVRGAGYRL 247


>gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans]
 gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas
           arsenicoxydans]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 81/226 (35%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  LA  +   L+   +       G +        +FD +ILDLGL  + G 
Sbjct: 1   MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+   SIE +V+GL  GADD+++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+     G   I TV G GY L + A+
Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEKFAE 223


>gi|146279972|ref|YP_001170130.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558213|gb|ABP72825.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 115/224 (51%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL EDD   A  +   L +E ++V     G D +       +D +++D  +  + G 
Sbjct: 1   MKILLAEDDSQTAAYLRQGLSAEGYSVDHVPDGRDALVQATLQPYDLLVIDRMMPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL--VARIRAIVRR 118
            +++ALR A++  P+ IL+ M  + D+V GLQ+GADDY+ KPF   EL       A    
Sbjct: 61  SLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 120

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++ ++  GDL+++   +T    G  I L  +E++++E L        T+ M L  +
Sbjct: 121 LAETSRDVLRVGDLTLDTTRRTATRGGAEIDLQPREFRLLEHLMRSAGRVQTRTMLLEAV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +P   +++  I +LR K+ +    K  + TV G GY+L+
Sbjct: 181 WDFHFDPGTSVVETHISRLRAKI-DRPFEKPLLHTVRGAGYMLK 223


>gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
 gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  + + I   LK+ ++       GE  +     +  D I+LDLGL DI G EV
Sbjct: 6   ILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHNPDIILLDLGLPDIDGVEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +  +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IHRVRSWS-NLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTQRRLAAL 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                + +++   G L V+  A    + G  +HLT  EY+++ LL       LT      
Sbjct: 125 QVGAANTEAVFTNGKLKVDYAAGCAFLDGQELHLTPSEYKLLCLLCKNVGKVLTHTFITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E +V  + VF+  LRKKL    G   YI+T  G GY +
Sbjct: 185 QIWGRSWENDVASLRVFMATLRKKLEKEPGSPQYIQTHIGVGYRM 229


>gi|307129447|ref|YP_003881463.1| Two-component response regulator [Dickeya dadantii 3937]
 gi|306526976|gb|ADM96906.1| Two-component response regulator [Dickeya dadantii 3937]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/234 (35%), Positives = 125/234 (53%), Gaps = 5/234 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED    A  I   LK  +F V V   G DG+      ++D  ILD+ L  + G+
Sbjct: 1   MRLLLVEDQTMAADYISKGLKENDFVVDVAHDGVDGLHYLLTNDYDLAILDVMLPGMSGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R A   TPV  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR+R I+RR  
Sbjct: 61  KILELARQAGKPTPVMFLTARDEVEDRVRGLELGAEDYLIKPFSFSELLARVRVIMRRQA 120

Query: 121 GH----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            H     +S++   +L ++     V   G RI LT KE+ ++ LL  R    L++ +   
Sbjct: 121 VHMPAVEESVLQISNLQLDFLKHRVSRGGKRIELTQKEFLLLSLLMRRSGEVLSRTVLAE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
            ++D   +PE  +IDV I +LR K+ +       + T+ G GYVL      +T 
Sbjct: 181 QVWDMNFDPETNVIDVAIRRLRSKIDDD-YEVKLLHTIRGAGYVLEVRNDADTA 233


>gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 238

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/214 (31%), Positives = 114/214 (53%), Gaps = 8/214 (3%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           ++  L+   F+V   D G   +        DA+ILD+ +  + G  V+ ALR      P+
Sbjct: 23  LQRGLRLSGFSVVTADNGAAALSAVHQQHPDALILDMNMPGLDGVSVVTALRAMGDDIPI 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQS-------LIV 128
           C+LS  SS+ D++ GL++GADDY++KPF   EL+AR++A++RR    +++       +I 
Sbjct: 83  CVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYGVIH 142

Query: 129 TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVK 188
              L V++  + V V    I LT +E++++  L+      L++   L  ++      +  
Sbjct: 143 VDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWGYDFAADTN 202

Query: 189 IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++DVF+  LRKKL    G    I TV G G+VLR
Sbjct: 203 VVDVFVGYLRKKLE-LKGRHRLIHTVRGYGFVLR 235


>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
 gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
           SK121]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 12/224 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++  SI   L++E ++V +   G   +  C+  + D ++LD+ +    G E
Sbjct: 5   RVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMPGFDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+  +   D + GL  GADDY+SKPF+   LVAR++A++RR+  
Sbjct: 65  VCRRIQAVRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADR 123

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GD+ ++L  + V      +HLT  E+ +I  L+ R    + +E  L
Sbjct: 124 AEHAARPVADLLEFGDVVIDLTERRVRRDAQEVHLTRTEFDLIAYLAERPRAAIPRESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   +    + +D  +  LR+KL     G + I TV G GY
Sbjct: 184 EEIWGWGEGAGSRTVDSHVKALRRKL-----GPSVIRTVHGVGY 222


>gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63]
 gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08]
 gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07]
 gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08]
 gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L SE F V       + +      +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARIR  +R+S  
Sbjct: 63  ICTEIKENQ-DIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
              +  + G L V+     V+  G+ + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 122 FGSTFEICG-LYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ +       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221


>gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
 gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
          Length = 245

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L+   F   +   G +   +      D +ILD+ +    G  
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+ +S   D++ GL+ GADDY+SKPFN  EL+AR+RAI+RRS+G
Sbjct: 66  LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     + + +      S++   + +       I L+  E+ ++  L  R    L+
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L+   +    P  + ID+ I +LR KL         I+T+ G GYVL
Sbjct: 185 RDKLLDLTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
 gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii
           TW07627]
          Length = 219

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +   I+  L    F+V     G  G E      +DA+ILDL L  + G 
Sbjct: 1   MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPRMDGR 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++ ++V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A + +  G++ ++   +   + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     ++V +  LR+KL +      +I TV G GY L E
Sbjct: 181 WDEEVTSNAVEVHVHHLRRKLGSD-----FIRTVHGIGYTLGE 218


>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
           Hakam]
          Length = 225

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/223 (27%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMRKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D ++GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKRIRSFS-NVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNQH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           AQ  I    +  +     V V    + LT  E+ ++ L     N  L+++  +  ++   
Sbjct: 123 AQ--IQYQGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLREN 224
              E + +D  I  LR KL        ++++TV+G GY   + 
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRWVDT 223


>gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24]
 gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24]
 gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)]
 gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 12/231 (5%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           MR+LL+EDD  +A ++  +L    F+V     GE+ ++    +   F  ++LDLGL D  
Sbjct: 1   MRLLLVEDDNHVAAALSAILARHGFDVTHARSGEEALQALVPEVDGFGVVLLDLGLPDQD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G+EV   +R  + STPV +++  + +  ++ GL  GADDY+ KP++  EL+ARI A+ RR
Sbjct: 61  GYEVCGKIR-KRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRR 119

Query: 119 SR-----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +      G  ++++  G + + L  + V V G  + LT KE+ ++ LL+ R      +E 
Sbjct: 120 TAHEDATGSTETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQ 179

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++ ++    E   + ++V +  LR KL         IETV G GY L   
Sbjct: 180 IISEVWRTSWEGTGRTLEVHVASLRSKL----HMPALIETVRGVGYRLVAP 226


>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DDK +   +   ++ E + V   +  E  ++  +  + D +ILD+ +  + G+E+
Sbjct: 5   IYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIMMPGMDGYEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            R +R  K   P+ I+S      DK+ GL+ G+DDYI+KPF+  EL+AR++++ RR +  
Sbjct: 65  CRQIR-KKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVKMP 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                I   D+ +  D + V   G  I  T  E+++I+ L+   N   T+E  L  ++  
Sbjct: 124 KRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVWKY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E + +D  + ++RKKL +     N I T+WG GY + 
Sbjct: 184 DSFTETRAVDDMVKRIRKKLQSYGCEFN-ISTIWGYGYKVE 223


>gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
 gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family
           protein [Lysinibacillus fusiformis ZC1]
          Length = 233

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  +   + L L + N+++        G  L    + D I+LD+ L D  GFE
Sbjct: 5   KILIVEDDLDIMEVLSLTLANANYSILKASSLSSGWHLAVTQQPDLILLDVNLPDGTGFE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV-RRSR 120
           + +++R       +  ++    IE K+ G + GADDY++KPF  +EL+ARI+A + RR+ 
Sbjct: 65  LAKSIRDVS-DVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRNP 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++   +LS++LD K V   G  ++L  KE  ++  L    N  ++ +  ++H++ 
Sbjct: 124 SKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVWG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               P++K + V I  LR+K+ +      +I+TV G GY   
Sbjct: 184 YDGVPDLKTVSVHISTLRRKIEDIPSKPKWIQTVRGFGYQFV 225


>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
 gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
          Length = 223

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 114/223 (51%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++DD  +   + + L  E + V + +  +  + L +    D  ++D+ +  + GF
Sbjct: 1   MKILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVMMPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   L       PV +L+    +EDK RG  +G+DDY+ KPF  +EL+ RI AI+RR  
Sbjct: 61  TLTEYL-TQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRFD 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G L ++  +  V +  + + L  KE++++ LL+ R +   T+   +  ++ 
Sbjct: 120 KKNQVTIQVGKLVIDRRSFEVVIGENTLILPLKEFELLALLASRPHQVFTRSYIMEQVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + + + ++  + ++R++L+        I TV G GY L E
Sbjct: 180 YDYDGDEQTLNTHVKRIRERLNRYDTAVE-ITTVRGVGYKLEE 221


>gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 221

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 126/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRGRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRRKLQ---GSSVEIRTARGMGYQI 218


>gi|332307772|ref|YP_004435623.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175101|gb|AEE24355.1| two component transcriptional regulator, winged helix family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 235

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 84/227 (37%), Positives = 125/227 (55%), Gaps = 11/227 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGFE 61
           +LLI+DD+AL   ++  L ++ + V V   GE G+   K    FD IILD+ L  + GFE
Sbjct: 6   LLLIDDDQALTELLQEYLTAQGYTVQVASDGEAGLLAAKSGQHFDLIILDVMLPKVDGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL+ LR   + TPV +L+      D++ GL+ GADDY++KPFN  EL AR++AIVRR   
Sbjct: 66  VLKRLRSTHV-TPVLMLTAKGDDFDRILGLELGADDYLAKPFNHRELSARVKAIVRRVDI 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                S    Q++I  GD+ +N+ A+TV    H + LTG E+ ++ LL       + K+ 
Sbjct: 125 QAGLQSDKQKQNMIEIGDVQLNIAAQTVACNSHEVELTGTEFAVLRLLMSSSPDLVPKQA 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
               +   +     + ID+ +  LRKKL N    +  I+T  G GYV
Sbjct: 185 ISEQVLGRKLAAFDRSIDMHVSNLRKKL-NMFSEQEKIKTHRGVGYV 230


>gi|326796232|ref|YP_004314052.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
 gi|326546996|gb|ADZ92216.1| two component transcriptional regulator, winged helix family
           [Marinomonas mediterranea MMB-1]
          Length = 244

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA   +  L+   F   +   G + I      +   ++LDL L    GF V
Sbjct: 9   ILIVEDDERLASLTQEYLQKNGFKAEIEPDGRNAISRIINEQPSLVVLDLMLPGADGFTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R++R      P+ +L+  S   D++ GL+ GADDY+SKP     L+ARI++++RRS   
Sbjct: 69  CRSVRND-YKGPILMLTARSDDVDQILGLEIGADDYVSKPAKPRVLLARIQSLLRRSTQD 127

Query: 120 ------RGHAQSLIVTGDLSVNLDAKTVEVQGH-----RIHLTGKEYQMIELLSLRKNTT 168
                     +  +  G L V+   +   +         I LT  E+ ++ LL+      
Sbjct: 128 VDLSSLESKEEQTLTFGPLVVDNSRREAWLVDESSEKTEIELTSAEFDLLWLLASNAGRI 187

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L++E   + L     + + + +DV I ++R K+ +       I+T+  +GY+  +  
Sbjct: 188 LSREEIFSELRGIEYDGQDRSVDVRISRIRSKIGDDPIHPRRIKTIRSKGYLFVKEV 244


>gi|304407984|ref|ZP_07389634.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304343003|gb|EFM08847.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 231

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 108/226 (47%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+IEDD      + L L  E + V       +G+   + +  + ++LDL L D  G  
Sbjct: 3   KVLIIEDDNIFGDMLSLYLTEEQYEVTRVPSAGEGLRALQEFAPNVVLLDLMLPDTEGIN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               LR    + P+ ++S  + + +++  L  GADDY+ KPF+ +EL ARI A++RR+  
Sbjct: 63  ACAMLRGF-TTIPIIVISAETKVSERILSLSEGADDYLCKPFSMQELKARIEAVLRRTNM 121

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   A        L +++  + +   G+ I  T  E+++I+LL        ++E  
Sbjct: 122 QSAVIAPPAAPNADEWTLVLDMARRLLICNGNEIETTFSEFEIIKLLYHNPGKVFSREEL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +N +         + IDV I  LRKK+        YI+TVWG GY 
Sbjct: 182 INAIRGIDSYINERAIDVHITNLRKKIEQNPKEPQYIKTVWGVGYK 227


>gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
 gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 220

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   LK++   V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIADGVRKALKADGCAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV IL+   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++S+I  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + A
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKEA 220


>gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1]
 gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
 gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa
           39016]
          Length = 230

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 118/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR      PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R++   
Sbjct: 68  LRDLREWS-QVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+   + V ++G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator
           [Nitrosococcus watsonii C-113]
 gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family
           [Nitrosococcus watsonii C-113]
          Length = 219

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED+ ALA  +  + K   + V     G D +       +D ++LDLGL  + G 
Sbjct: 1   MRLLLVEDNVALADELLPLFKGYGYAVDWRVDGRDALLAVHDESYDMVVLDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R   ++ PV IL+   +  +++ GL++GADDY+SKPF+ +EL+ R++A++RRS 
Sbjct: 61  QVLQHWRAEGVTLPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSH 120

Query: 121 GHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   S  +  G L+++ D ++V        LT  E++++    L     L++     HLY
Sbjct: 121 GTVNSPRLEAGGLALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           DG  E +  +++V I +LR+KL +       IET   +GY  ++
Sbjct: 181 DGESERDSNVLEVHISRLRRKLGD-----PVIETRRSQGYRFQK 219


>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
 gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 55/225 (24%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           ++L++ED++ +  ++      + + V   + G+ G++L   + +    +ILD+ L  + G
Sbjct: 3   KVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDG 62

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V R +R    + P+ +L+  S  +D + G + GADDY++KPF    L+AR + + + +
Sbjct: 63  WSVCRRIR-KNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDT 121

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               Q    I    + ++  A++V + G +I  T  EY+++  L   K   LT+E  + +
Sbjct: 122 NQQVQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLTREQLITN 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + + K +   +  +R KL   A    +I TV   GY   
Sbjct: 182 IWGYDYDGDDKTLTAHMRNVRLKLGEKA---KHIITVVRTGYKFE 223


>gi|124384287|ref|YP_001028366.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
 gi|124292307|gb|ABN01576.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
          Length = 250

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +E     I+V++ +LRKK+  +      I TV G GY L + A 
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEKAAP 226


>gi|289677034|ref|ZP_06497924.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae FF5]
 gi|330980158|gb|EGH78344.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 247

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L+S    V +   G          + D +ILDL L    GF 
Sbjct: 9   HVLIVEDDQRLAELTRDYLQSHGLRVNIEGDGALASARIIAEQPDLVILDLMLPGEDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R++R  +   P+ +L+  +   D + GL +GADD++ KP +   L+ARI+A++RRS  
Sbjct: 69  ICRSVR-DRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEA 127

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 128 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 188 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 239


>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
 gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
          Length = 228

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L + ++ +L  E F+V   + G+ G+      E D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAAL-NDEIDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR    +TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++ 
Sbjct: 62  TLKRLRE-NWTTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQH 120

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +I   D+ V    +    QG  + LT  E+ ++   +     TLTKEM    
Sbjct: 121 QSVHKPSDVIECQDIQVYPGKQEAYCQGQLLDLTTTEFALLGHFAQNPGETLTKEMLSLD 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +   R     + ID+ +  LRKKL     GK  I+T+ GRGY++ 
Sbjct: 181 VLGKRLAAFDRAIDMHVSNLRKKLPERVDGKPRIKTLRGRGYLMV 225


>gi|269124222|ref|YP_003306799.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
 gi|268315548|gb|ACZ01922.1| two component transcriptional regulator, winged helix family
           [Streptobacillus moniliformis DSM 12112]
          Length = 225

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L + I+  LK+  + V     GE+ +       +D +ILD+ L  + GF
Sbjct: 1   MKILLVEDEIDLNNIIKKYLKTSGYIVDSVFDGEEALFNLNEASYDLVILDVMLPKLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  +R       V +L+    +EDK++GL  GADDY+SKPF+ EEL ARIRAI+RR  
Sbjct: 61  EVLEKMRKKNNKAAVLMLTSKDQVEDKIKGLDLGADDYLSKPFDFEELAARIRAIIRRRY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S I   DL ++   KTV      I LTGKEY+++E L   K   ++++   +H+YD
Sbjct: 121 DNLSSEIKIHDLILDTMKKTVIRNNVNIDLTGKEYEILEYLMQNKERIVSRDQIKDHVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E    +IDV I  +RKK+ +  G K  I T  G GYV++EN
Sbjct: 181 FYYEGSSNVIDVLIKNIRKKI-DLEGSKQIIFTKKGLGYVVKEN 223


>gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
 gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279]
          Length = 236

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 8/226 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +       L+ +           +          DA++LD+ L D  G E+
Sbjct: 13  IYYVEDDDNIRGLTLYALRQQGIEAEGFASDSEFKAAVARRVPDAVLLDIMLPDTDGLEI 72

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +R LR  + +   P+ +L+   S  DKV  L  GADDY++KPF+  EL +R RA++RR  
Sbjct: 73  MRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLRRGG 132

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   A   +  G + ++   +TV V+G  + LT +E+ ++E L  +     T+E  L  
Sbjct: 133 MTSRPASETLQVGGIELSPSRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESLLQS 192

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++    +   + +DV +  LR+KL + A   + IETV G GY L +
Sbjct: 193 VWGWDFDGGSRTVDVHVQTLRQKLGDHA---DRIETVRGVGYRLAD 235


>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+L+ED+ +L+  +  +L+ E + V V + G   +   +    D I+LDL L  +PG E
Sbjct: 3   RIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +L+   S  D V GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCREIRTRS-AVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  G + ++++  TVEV G  I +  KE++++ELL       LT+   ++ +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I ++R K+         + TV G GY   
Sbjct: 182 WGSDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
 gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family
           [Acidovorax delafieldii 2AN]
          Length = 224

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC-KFYEFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++    V     G +         EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRASGAVVDHVASGSEADAALMTNNEFDLLILDLGLPKMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  + L+ +E  ++E+L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIE---KGPIRIATVRGLGYCLEK 221


>gi|226228544|ref|YP_002762650.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091735|dbj|BAH40180.1| OmpR family two-component response regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 226

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 1/227 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+   F V V   GE  I      ++DAIILD+ +    G 
Sbjct: 1   MRILLAEDDTRLHDLLARALRERAFAVDVVADGEAAIIEAAVNDYDAIILDVTMPRRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV   LR     TP+ +L+   ++ D+V GL +GADDY+ KPF  +EL+AR+RAI+RR  
Sbjct: 61  EVCAELRKRGKRTPILMLTARDALTDRVAGLDAGADDYLVKPFELDELLARLRAIMRRGP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 IV GDL V+  A+     G  ++LT +EY ++  L+ +    + +    +H++D
Sbjct: 121 VLQDERIVVGDLVVDTRAQQATRAGVPLNLTTREYTLLAYLARQAGRVIGRAELTDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              +P    ++V++ ++RKKL + +     + T  G GY+L  +  D
Sbjct: 181 ANHDPASNALEVYVGRVRKKLESVSDTP-LLHTRRGAGYLLSADVTD 226


>gi|70731644|ref|YP_261385.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           fluorescens Pf-5]
 gi|68345943|gb|AAY93549.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas
           fluorescens Pf-5]
          Length = 231

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALNKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR  R    + PV +LS  +S   KV  L  GA+DY++KPF  +E +ARIRA++R++   
Sbjct: 67  LREFREWS-AVPVLVLSVRASELQKVEALDGGANDYVTKPFGIQEFLARIRALLRQAPSG 125

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L+V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 126 EVQEAALQVGPLTVDLAYRRVLLDGVEVALTRKEYAVLAQLARHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL++      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226


>gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 245

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/225 (28%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RILL+EDD+ + +++++ L    + V     G++         +  +ILD+ L  + G 
Sbjct: 28  IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILLPGMNGH 87

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR  R    +TPV +++ +S  E+++R   + ADDY++KPF  + L+ R+ A++RRS 
Sbjct: 88  ELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSG 146

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+  +  G L++  +   V      + LT KE++++ LL      TL+ E+ L+ ++ 
Sbjct: 147 AVAKE-LHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG 205

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +   +   I  LR KL +       I+TV G GY L E +
Sbjct: 206 YDFDGDGSTVHTHIKNLRAKLPDN-----IIKTVRGVGYRLEETS 245


>gi|87123720|ref|ZP_01079570.1| two-component response regulator [Synechococcus sp. RS9917]
 gi|86168289|gb|EAQ69546.1| two-component response regulator [Synechococcus sp. RS9917]
          Length = 242

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-FDAIILDLGLTDIPGF 60
           R+LL++D+  L   + L L  E + V V   G   +   +     + I+LD  L D  G 
Sbjct: 10  RVLLVDDESRLTDLLRLELDVEGYAVDVASDGASALIKARQDPAPNLIVLDWNLPDFTGI 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ + +R + ++TP+ +L+G   I D+V+ L +G DDY++KPF+ EEL+AR+RA+ RR+ 
Sbjct: 70  DICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLTKPFSIEELMARLRAMQRRAE 129

Query: 121 GHAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++         +  GDL ++   + V      I L+ KEY ++  L   +   L +  
Sbjct: 130 FFSKEGRSGQPLLLEVGDLRLHTGTRDVRRGDREIQLSVKEYDLLHFLMRGRGRVLERAE 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +  ++      +  ++DV+I  LR+K+         I TV G G++LR+ A
Sbjct: 190 IMRGVWGENFYGDDNLLDVYIRYLRQKIETE-DQPTLIHTVRGVGFILRDEA 240


>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
 gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
          Length = 228

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 226


>gi|77359810|ref|YP_339385.1| transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874721|emb|CAI85942.1| putative transcriptional regulatory protein RstA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 234

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 117/229 (51%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + + V+V   G++ +   K  +   I+LD+ L  + G  V
Sbjct: 7   ILLVEDDISLAQWVAEYLTEQGYCVHVCHRGDEVVGQVKTLKPQLILLDIMLPGLDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GA DYI KP     L+ARI++ +R +   
Sbjct: 67  CRELRSF-YQAPIIMLTARDDEMDEVIGLEVGASDYIMKPVRPRALLARIKSALRLTTQS 125

Query: 123 AQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +QS      I  G LS+N ++++V++    I+++  EY ++  L+      ++++     
Sbjct: 126 SQSHKQHSIINVGALSINSESRSVKLNDIDINISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + +DV I  LRKK ++       I+T+WGRGY+L   A 
Sbjct: 186 TKGREYDGLDRSVDVLISALRKKFNDDPQNPEKIKTIWGRGYLLVATAW 234


>gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S]
 gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
 gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi
           103S]
 gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
          Length = 226

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 118/223 (52%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL EDD+A+A  +   L  E + V +   G   +E     EF+ +ILDLGL  + G EV
Sbjct: 4   VLLAEDDEAIAAPLSRALGREGYTVTIEQTGPSALERALTGEFELLILDLGLPGMDGLEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR   +   V +L+  +   D V GL +GADDY+ KPF   EL+AR+RA++RRS G 
Sbjct: 64  CRQLRAHSLDLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARVRALLRRSGGG 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
              ++    + +   A+ V V G  I L  KEY+++ +L       ++++  L  ++   
Sbjct: 124 EDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRDTILREVWGDV 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLREN 224
           +    K +D+ +  LR+K+ +   G +  I TV G G+ +  +
Sbjct: 184 ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGFRINTD 226


>gi|296139723|ref|YP_003646966.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
 gi|296027857|gb|ADG78627.1| two component transcriptional regulator, winged helix family
           [Tsukamurella paurometabola DSM 20162]
          Length = 228

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R++++EDD A+   +   L+     V     G    E  +    D ++LD  L  + G +
Sbjct: 6   RVMVVEDDPAVRTVVADHLRLAGCLVSQHRDGARAWEAFQADRPDLLVLDRMLPGLSGDD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+ +  +E+++ GL+SGADDY++KPF+  EL  R+ A +RR+  
Sbjct: 66  LCRRVREVS-TVPIIMLTALDGLENRIDGLESGADDYLAKPFSLRELQLRVNAQLRRNTP 124

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +I  G   ++   + V +    I LT +EY+++  L       ++++  L  ++ 
Sbjct: 125 SEVDLVIDAGPFRIDAAHRRVWIGDREITLTTREYELMLYLVRNPGRVVSRDEILREVWR 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + V + +LR+K+ +      Y++T WG GY  
Sbjct: 185 WGF-GDASTVTVHVRRLREKIESDPRNPVYLQTEWGAGYRF 224


>gi|116073301|ref|ZP_01470563.1| putative two-component system response regulator [Synechococcus sp.
           RS9916]
 gi|116068606|gb|EAU74358.1| putative two-component system response regulator [Synechococcus sp.
           RS9916]
          Length = 236

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 66/223 (29%), Positives = 119/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  L   +   L+           G+D +   +   F  ++LD GL D  G E
Sbjct: 7   QLLLVDDDPELLQFLREELEGAGHGCIAVASGQDALLQLRQQAFALVVLDWGLPDFNGIE 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +  +TPV +L+   +++++V  L +GADD+++KPF  EEL AR+RA +RR   
Sbjct: 67  ICRRLRSSGDTTPVLMLTAHDALDERVAALDAGADDFLTKPFELEELHARVRAQLRRQGY 126

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++  A S +  GDLS++L  + V+     I+L+ +E+ ++  L     T L ++  L  
Sbjct: 127 AAQRDATSNLELGDLSIDLIRREVKRGESAINLSQREFDLLVCLVQEAGTVLPRQQILET 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   +DV++  LR+KL   +G    + T  G G++
Sbjct: 187 VWGHPFVGDPNALDVYMGYLRRKLEQ-SGLPQLLHTTRGVGFM 228


>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
           weihenstephanensis KBAB4]
 gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
 gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
 gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
           [Bacillus weihenstephanensis KBAB4]
 gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
 gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
          Length = 223

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/222 (28%), Positives = 118/222 (53%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V G RI LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYGERISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLR 222
           + + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKEFPVEDYLETVYKVGYKWK 221


>gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
 gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396]
 gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
           49124]
          Length = 232

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 64/228 (28%), Positives = 114/228 (50%), Gaps = 4/228 (1%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILL++D+  +       L    ++V V   G++G+EL +    D II D+ + ++ 
Sbjct: 1   MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G++ +  ++      P    +  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR
Sbjct: 61  GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            SRG     I  GDL +N     V +    + LT K ++++ +L+       +K      
Sbjct: 121 LSRGGETERIELGDLVINHVTHEVRIGDQPLELTVKSFELLWVLASNPERVFSKTELYEK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAA-GGKNYIETVWGRGYVLREN 224
           ++      +   ++V I  LR++L+         I+TVWG GY + + 
Sbjct: 181 VWQEDYVDDTNTLNVHIHALRQELTKYTNSNIPAIKTVWGLGYKMEKP 228


>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
 gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
 gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
           [Micromonospora sp. L5]
          Length = 222

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           ++ED+++ + ++  ML+ E F V V   G   +        D ++LDL L ++ G EV R
Sbjct: 1   MVEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLMLPEMSGTEVCR 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            LR      P+ +++   S  DKV GL+ GADDY++KP++  ELVARIRA++RR    + 
Sbjct: 61  QLRQRS-HVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAESN 119

Query: 125 ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G + ++++   V V G  + L  KE++++ELL       LT+   ++ ++ 
Sbjct: 120 ETGAPTLAAGPVRMDIERHVVTVGGAGVQLPLKEFELLELLLRNAGRVLTRGQLIDRVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                + K +DV + +LR K+        YI TV G GY    
Sbjct: 180 ADYVGDTKTLDVHVKRLRSKIEPEPSAPRYIVTVRGLGYKFEP 222


>gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4]
 gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4]
          Length = 223

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 125/225 (55%), Gaps = 6/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ L   +   L  + F V   D G D   L     ++A+ILDLGL    G 
Sbjct: 1   MRVLLVEDDRELQKRLHRELTQQGFVVDTADNGVDAEFLGFEEPYEAVILDLGLPQRSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R      PV IL+   +  +KV G + GADDY+SKPF+ EEL+AR++A++RRS+
Sbjct: 61  DVLRHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRRSQ 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               QS + +  L+++ + + V   GH I LTG E++++    L     L+K      +Y
Sbjct: 121 NRPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +  +++V++ +LRKK+ +       I+T  G+GY+  E 
Sbjct: 181 ALDADKDSNVMEVYVNRLRKKVGSD-----LIKTRRGQGYIFGET 220


>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
 gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
           Tu4000]
          Length = 231

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 SSDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 227


>gi|158423193|ref|YP_001524485.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158330082|dbj|BAF87567.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 228

 Score =  246 bits (630), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 4/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +RIL+++D+ A+   +   L +  + V   D     +     +  DA++LDLGL D+ G 
Sbjct: 4   IRILVVDDEPAIHRFLSPALTAAGYGVARADDAAGALRAIATHPPDAVLLDLGLPDMDGK 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  +R      P+ +LS      +K+  L  GADD+++KPF   EL+ARIRA +R+  
Sbjct: 64  EVIGRVRQFS-QVPIIVLSARDREAEKIEALDLGADDFVNKPFGVGELMARIRAALRQRG 122

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G    A  ++  G L ++     V   G  I LT KE++++  L+      LT    L  
Sbjct: 123 GDTHAADVVLKVGPLEIDRPRHRVTRDGQEIKLTPKEFELLVYLARHPGRVLTHRQILGA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++      + + + V++ +LR++L         I T  G GY + E
Sbjct: 183 VWGPAHLDDTQYLRVYVGQLRQRLEVEPATPTLILTEPGIGYRMAE 228


>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 231

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 227


>gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 219

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 13/225 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+ ++   I + L+ + + V   + GE+ + +    + D ++LDL L  I GFEV
Sbjct: 4   ILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIFNNRKIDIVLLDLMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            + +R    S  + +L+  S  ED+V+GL  GADDY+ KPF+  EL ARI ++ RR    
Sbjct: 64  CQKIRDISQSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLARRLNHI 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  +I +G   +++  K V         T  EY +++ L   KN   T+   L+ +
Sbjct: 124 YSKKESLVIKSGPFELDVINKKV---------TPTEYCLLQFLINNKNKVFTRNDILDEV 174

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      + K++DV I ++R+K+ N      Y+ T WG GY+ +E
Sbjct: 175 WGINYIGDEKVVDVNIRRIRRKIENDPSAPEYLCTDWGYGYLWKE 219


>gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17]
 gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17]
          Length = 235

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L++E F   +   GE  ++       D  I D+ +  + G E+
Sbjct: 5   IALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDIKMPRMDGLEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  K   PV  L+      D+  GL  GADDYI+KPF++  L+ARIRAI+RRS G 
Sbjct: 65  LRRLRE-KSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSEGS 123

Query: 123 AQSL----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           +Q+           +  G L+++     V  +G  + LT  E+ ++E L+ R     T+ 
Sbjct: 124 SQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRTRN 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  Y      + + ID  I +LR+K        + IET++G GY   E 
Sbjct: 184 QLMDAAYQDDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGYRFSEE 235


>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
 gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
          Length = 225

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 56/226 (24%), Positives = 115/226 (50%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL+ +DD  +   ++  L++E + V     GE+   L    +    ++D+ + +  G+
Sbjct: 2   IHILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNKDGY 61

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R      PV +L+    + DK RG   G DDY++KPF   EL+ RI+A++RR +
Sbjct: 62  QLCEEIRR-YYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +   I   + +++  +  V+  G  + L  KE++++  L+   + T ++E  +  ++ 
Sbjct: 121 MVSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + + + +DV I +LR++ ++  G    I T+ G GY L    K
Sbjct: 181 TDFDGDDRTVDVHIKRLRERFADRRGDFR-IRTIRGVGYKLEAAPK 225


>gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 219

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L  S++ +L+   + V      ++ +   +   +D IILD+ L DI GF
Sbjct: 1   MKVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   I TPV +L+    + DKV+GL+ GADDYI+KPF  EEL+ARI+A+ RRS 
Sbjct: 61  TLLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++   DL V+L ++ V+  G  I LT K + ++E L   +   +T EM  +  ++
Sbjct: 121 VEKSDVVKIDDLEVDLSSRKVKKDGKEIDLTPKLFCILEQLVRNRGKIVTYEMLYSKCWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             + P  + +   I  LRK +      K  I+T+ G GY +
Sbjct: 181 ITEVPSNETLRANIKLLRKLIDP---EKKIIKTISGVGYRI 218


>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 234

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I   L+           G + +   +  + D IILD+G+ D+ G +
Sbjct: 4   RILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMDGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+  LS      DKV GL+ G DDY++KPF+  ELVAR++AI++RS  
Sbjct: 64  VCRQIRKTSG-LPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSGN 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A+      + V G+LS++   +TV      I +T  E+ +++ L  R +   ++E  + 
Sbjct: 123 EAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R K   AAGG+  I TV G G+ L
Sbjct: 183 AAYGAGTYVADRTIDSHIRNIRAKF-LAAGGQGIIATVHGIGFKL 226


>gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator
           [Isosphaera pallida ATCC 43644]
 gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family
           [Isosphaera pallida ATCC 43644]
          Length = 236

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+++L   + + L+ E F V     G+DG+   +    D I+LDL L   PG E
Sbjct: 5   RILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQVKLPDLIVLDLMLPVKPGLE 64

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R LR        PV +L+  +   D++ G   GADDY+SKP+  + L+ RI+  + R 
Sbjct: 65  VCRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQLNRR 124

Query: 120 RGHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           R    +      +    + ++            + LT  E++++E L  +     T+   
Sbjct: 125 RQTEDAKNGDLVVERHGVVIDRHRHRALCNNEELLLTPTEFRLLEALMRQAGRAFTRHEL 184

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++           + IDV I  LRKKL+++A   + IETV G GY  RE    E+
Sbjct: 185 MDAAMGEDAVVLERTIDVHIKSLRKKLNHSA---DLIETVRGVGYRFRETGLAES 236


>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
 gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
           [Sphingobium chlorophenolicum L-1]
          Length = 239

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL++D++++   +   L    F V   +   +          D +ILD+ +    G  
Sbjct: 6   HLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +L+  S   D++ GL+ GADDY+ KPF+  ELVARI+ I RR   
Sbjct: 66  LCRHIRETS-EIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 122 HAQ-------SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             Q       +     +  +    +T V+ +G  + L+  EY ++   + R N  L+++ 
Sbjct: 125 GGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+           + ID  I +LRKK+         I+TVWG GY L  + +
Sbjct: 185 LLDITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTLSSDVR 237


>gi|149926501|ref|ZP_01914762.1| two-component response regulator [Limnobacter sp. MED105]
 gi|149824864|gb|EDM84078.1| two-component response regulator [Limnobacter sp. MED105]
          Length = 231

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LLIEDD  LA  ++  L  E F V +   G DG+ L     ++ IILD  L DI G 
Sbjct: 1   MKLLLIEDDLRLADYLKKGLTEEGFVVDLARNGIDGLHLATQGLYEVIILDGMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR +K S PV +L+  + +ED+V GL++GADDY+ KPF   ELVAR+ A+ RR+ 
Sbjct: 61  AVLSALRQSK-SIPVLMLTARAMVEDRVSGLKAGADDYLVKPFAFAELVARLHALGRRTS 119

Query: 121 GHA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A     +++   DL ++   +T +  G  + LT KE+ ++ LL  RK   +++     
Sbjct: 120 TVAAESQTTVLTLLDLELDAVRRTAKRGGKDLRLTAKEFSLLWLLLRRKGEVISRTEIAE 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            ++D   + E  +IDV I +LR KL +       + T+ G GYVL   A+
Sbjct: 180 LIWDMHFDSETNVIDVAIRRLRIKL-DDPYEIPLLHTIRGMGYVLEIRAQ 228


>gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct]
          Length = 264

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/229 (31%), Positives = 132/229 (57%), Gaps = 4/229 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +DDK +A  I+   +    +  V   G++ + L     +D I++D  +  + G  
Sbjct: 32  KVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIVIDWMMPYLDGIS 91

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR   I+TPV ILS + S E+K+ GL+SG+DDY++KPF+ +EL+ R+  + +R++ 
Sbjct: 92  LLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRTKQ 151

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             ++    +  GD+ ++  A  V      I L  +EY+++ LL   KN  ++K M L  +
Sbjct: 152 ITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 211

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +D   +P+  +++V I +LR KL+   G  + I+T+ G GYV++E   D
Sbjct: 212 WDYDFDPQTNVVEVHISRLRNKLTE-GGLSDPIKTIRGFGYVIQEYPYD 259


>gi|154247327|ref|YP_001418285.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161412|gb|ABS68628.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 223

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L  ++   + ++          +D  E      F+ ++LDL L D  G 
Sbjct: 1   MRILLVEDDPVLGMAVRDQIVADGHTPDWVTRLDDATEAIHAAAFELVLLDLMLPDGRGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           + L+ LRVA   TPV +L+    I D++  L +GADDY+ KPF+  EL ARIRA+ RR  
Sbjct: 61  DFLKRLRVAGDVTPVIVLTARDQISDRIAALDAGADDYLVKPFDLFELSARIRAVGRRYA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   L+  GD+ V+L A++V   G  + LTG+E+ + E    R +  ++K      LY 
Sbjct: 121 GNPNPLVSFGDIEVDLAARSVWRAGRPVVLTGREWSLFEAFVQRPHQLMSKPQLEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V++ +LRKKL     G   IETV G GY L
Sbjct: 181 FDAEVESNTIEVYVGRLRKKL-----GAQVIETVRGMGYRL 216


>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     Y  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIRSWS-NMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S    G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E +V  + V++  LRKK+ +      YI+T  G GY +
Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|304395690|ref|ZP_07377573.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
 gi|304356984|gb|EFM21348.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. aB]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   + L L++E+  V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 4   VLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGLIEAATRKPDLVILDLGLPDGDGTDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  G 
Sbjct: 64  IRDLRQWS-AIPVIVLSARSDEQDKIAALDAGADDYLTKPFGIGELLARVRVALRRHSGQ 122

Query: 123 AQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   D+SV+  A+ V+  G+ IHLT  E++++ +L       LT+   L+ ++  
Sbjct: 123 QPDARVHFADVSVDFAARRVQRGGNEIHLTPIEFRLLSILLNNAGKVLTQRQLLSQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +++  LR+KL        ++ T  G GY  
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTQPAHLLTETGIGYRF 222


>gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
 gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + LK     V   +  ++          D  ++DLGL D  G 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKDLGHQVDSAEDAKEADYFLHESCPDIAVVDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++  R   ++ P+ +L+   S ++KV+ L SGADDY++KPF  EELVAR++A++RR+ 
Sbjct: 61  SMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++  G+  ++L  K   V G  + LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  E   IDV + +LRKK+       + I TV G+GY    N 
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQQ-FHSDDVIVTVRGQGYRFDVNG 224


>gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes
           bacterium D7]
 gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
 gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp.
           D7]
          Length = 236

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/234 (29%), Positives = 115/234 (49%), Gaps = 13/234 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +  ++ + LK++ +NV     GE+G+ L +  E    ++D+ +  + G  +
Sbjct: 5   ILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIMMPVMDGITM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  LR      PV  LS  S   DK+ GL  G DDYI+KPF   EL+AR+ + +RR    
Sbjct: 65  VLKLRE-NYDFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYNQI 123

Query: 122 ----------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                     + Q  +V G L ++   K V V    + LT KE+Q++ELL        + 
Sbjct: 124 LALKENRNLNNNQQRLVVGGLELDKFTKEVFVNDRGVRLTAKEFQILELLMSYPGRVYSA 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           E     ++   +    + I V + KLR+K+        Y++ VWG GY + +  
Sbjct: 184 EEIYEAVWK-EEAINTETIMVHVRKLREKIEANPKKPEYLKVVWGIGYKIEKGV 236


>gi|114562749|ref|YP_750262.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
 gi|114334042|gb|ABI71424.1| two component transcriptional regulator, winged helix family
           protein [Shewanella frigidimarina NCIMB 400]
          Length = 234

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  +A  +   L  E FN  V   G D IE  K  + D +ILDL L    G  +
Sbjct: 12  ILVVEDEPKIAQILVDFLTLEGFNTLVQHDGRDVIETIKAQQIDFMILDLMLPYKDGLTI 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            R LR   +  PV +L+      D++ GL  GADDY+ KPF+  E+VAR++ I+RR    
Sbjct: 72  CRELRQFSM-LPVLMLTARVDEIDRLMGLDIGADDYVCKPFSAREVVARVKTILRRVENT 130

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               ++ +I    L +N++    +V    + LT  E++++  L  R     +++  +   
Sbjct: 131 HGSQSEQVIRYKHLQINIERFKCQVDQQDVELTPVEFRLLHTLLKRPGVVHSRDSLMQVC 190

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           Y        + ID  +  LR KL+ A+  K  + +++G GY + 
Sbjct: 191 YVDDRIVSSRTIDSHVKNLRHKLTQASQQKELLHSIYGVGYKVE 234


>gi|303240444|ref|ZP_07326961.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302592009|gb|EFL61740.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  ++    + V V   G DG++      +D I+LD+ L  I GF
Sbjct: 1   MRILIVEDEIRLADTLREIMLENKYIVDVVYNGADGLDYAMTGVYDVIVLDVMLPKINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV++ +R  K+ TPV +L+    + DK+ GL SGADDY++KPF  +EL+ARIRA+ RR  
Sbjct: 61  EVVKTMRKNKLQTPVILLTAKDEVSDKIAGLDSGADDYLTKPFVPDELLARIRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DLS+NL    +E     +HL  KE++++ LL L     + KE  +  ++ 
Sbjct: 121 EIIMDSMQFSDLSLNLATYMLECGSKSVHLGYKEFEILRLLMLNPTMVVPKETLITRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              + E   ++V+I  LRKK S   G K  + TV   GY L E
Sbjct: 181 DESDAEDNNVEVYISFLRKKFS-YLGSKATVSTVRKIGYFLEE 222


>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 235

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 21  ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+   
Sbjct: 81  CKKIRSFS-NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNQR 139

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 140 TQ--IQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 197

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
              E + +D  I  LR KL        ++++TV+G GY
Sbjct: 198 TNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGY 235


>gi|237654161|ref|YP_002890475.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
 gi|237625408|gb|ACR02098.1| two component transcriptional regulator, winged helix family
           [Thauera sp. MZ1T]
          Length = 248

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+  +   +   L+SE   V      E G         D ++LDLGL D  G  +
Sbjct: 11  VLLVEDEAGIRRFVRTALESEGCTVREAAALERGRIELASRRPDLLVLDLGLPDGDGTAL 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
           L  LR      PV +LS  S   DKV  L +GADDY++KPF   EL+AR+RA++RR+   
Sbjct: 71  LAELRGWSG-MPVLVLSARSDETDKVAALDAGADDYLAKPFGVAELLARVRALLRRALRP 129

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A + I  GD+ ++L+ + V   G  +HLT  E++++ LL+      +T+   L   + 
Sbjct: 130 PQAAACIAFGDVELDLEQRRVTRGGAPVHLTPIEFRLLGLLATAAGRVVTQRQLLTGAWG 189

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                    + V++  LR+KL        +I T  G GY L    
Sbjct: 190 PNHVEHAHYLRVYMAGLRRKLEPDPRLPVHILTEPGVGYRLVPEP 234


>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
 gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
           [Polaromonas sp. JS666]
          Length = 223

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/221 (36%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD AL  ++   L+++ + V     GE+G+ L + Y  D +I+DLGL  + G 
Sbjct: 1   MRLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    + P+ IL+   S +DKV GL++GADDY+ KPF   EL AR++A++RRS 
Sbjct: 61  TIVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSL 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G LS++L A+   + G  + LT  EY+++E L  ++   +TK+   ++LY 
Sbjct: 121 KTASDVLTLGPLSIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++ +  +++V + +LR+KL         IETV GRGY  
Sbjct: 181 HGEDRDSNVLEVLVGRLRRKLDPDGSLGP-IETVRGRGYRF 220


>gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
 gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter junii SH205]
          Length = 225

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+ L   + FD ++LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTLTLLRYHQFEVEWVNNGVDGLSLLAKHNFDLVLLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RR   
Sbjct: 63  VLRQIRQRS-ALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLRRGHA 121

Query: 122 HA------QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GDL ++++      +G +I L+ +E+ ++  L    N   +K    
Sbjct: 122 ETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKANLE 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           + LYD   E     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 DKLYDFDSEVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
 gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
          Length = 228

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R      P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  AKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVAGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           AQ     +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDF-EPKLIHTKAGMGFILTD 226


>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
 gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
           23726]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N++V     GE GIE+     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ I++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R    
Sbjct: 72  VCQELRKL-AETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     ++ +++ AK V +    + LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+   +    YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKIDPKSY---YIHTIRGFGYIFQ 229


>gi|260220645|emb|CBA28392.1| Transcriptional regulatory protein ompR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 274

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 55/228 (24%), Positives = 109/228 (47%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  +   +   L   NF V+     +        +  + ++LD+ L    G  +
Sbjct: 35  ILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLTL 94

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      PV +L+  ++  D++ GL++GADDY+ KPF   ELVARI  ++RRS+G 
Sbjct: 95  SREIRERS-QIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGA 153

Query: 123 AQ--------SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +         ++      ++ + +T V   G  + L+  E++++           +++ 
Sbjct: 154 KEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQTPRRLFSRDQ 213

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +        +   + ID+ + +LR+KL++     + I+TV G GY+ 
Sbjct: 214 LMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261


>gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum
           PYR-GCK]
 gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
 gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family
           [Mycobacterium gilvum PYR-GCK]
 gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix
           DNA-binding domain [Mycobacterium sp. Spyr1]
          Length = 231

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 4/212 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F+V+    G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 21  LERGLRLSGFDVFTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 80

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA---QSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR    A      I  G L
Sbjct: 81  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 140

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K   L++   L  ++      +  ++DV
Sbjct: 141 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDV 200

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           FI  LR+KL    G    + TV G G+VLR+ 
Sbjct: 201 FIGYLRRKLEAN-GAPRLLHTVRGVGFVLRQQ 231


>gi|326773027|ref|ZP_08232311.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505]
 gi|326637659|gb|EGE38561.1| transcriptional regulatory protein CutR [Actinomyces viscosus C505]
          Length = 219

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E     ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVAVNDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVRDHPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P      V I  LR+KL    G    I+TV G GY  
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGYRF 217


>gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
 gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC
           15579]
          Length = 230

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 120/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++ED+  +   +  ML+   +       G + +   K Y++D ++LDL L  + G 
Sbjct: 5   IKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPGMDGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  +R +K   PV I+S     + K+  L+ GADDYI+KPF+ +E+ ARI + +RR +
Sbjct: 65  ELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYK 123

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  Q+L+   ++S+N D + V V   +I LT +E+ +++LL        TK     
Sbjct: 124 EFSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      +   I+V I  LR KLS A     YI+T+WG GY L
Sbjct: 184 SVWSSEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKL 228


>gi|218442075|ref|YP_002380404.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218174803|gb|ACK73536.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 228

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 1/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD      +   L      +     GE    L    E+D +ILD  + +I G 
Sbjct: 1   MRILLVEDDLEQLEPLSFALSETGHIIDAVQDGETAQWLINEKEYDLLILDWMIPNISGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++    R    ++PV +L+   +  DKV GL +GADDY+ KP +  EL+AR+RA+ RRS 
Sbjct: 61  QLCTYYRYLGKTSPVLMLTAKDTTLDKVTGLDAGADDYLVKPVDLLELLARVRALGRRSP 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DLS++L++  +E     I L+ +E+Q++E         LT+E     L++
Sbjct: 121 LWQGDSLKIEDLSLDLNSLKLERNSVTIELSVREFQLLEYFMRHPQQVLTREQIEQSLWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +EPE   +   I +LRK+L       ++IETV+G GY L  +AK
Sbjct: 181 WGNEPESNAVSTLIRRLRKRLQLVEVH-HWIETVYGVGYRLNPSAK 225


>gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
 gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759]
          Length = 239

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 117/229 (51%), Gaps = 8/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD  L+  I+ ML+   +        +D  E+    + D I+LD+ L D  GF  
Sbjct: 11  ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINLPDGTGFSF 70

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+   S  +S +DKV GL  G DDYI+KP++ +EL++RIR+I+RR+ G 
Sbjct: 71  CKELRHTS-QVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGV 129

Query: 123 AQSLIVT-------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +            ++ +N  A+TV      + +  KE+ ++  ++  +   LTKE  +
Sbjct: 130 DDNKSEMLTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIM 189

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + ++    + E   + V +  LR+KL         I TVWG GYVL ++
Sbjct: 190 SAVWGLYSDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVLGDS 238


>gi|108757150|ref|YP_630995.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622]
 gi|9081855|gb|AAF82621.1|AF157830_2 PhoP2 response regulator [Myxococcus xanthus]
 gi|108461030|gb|ABF86215.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622]
          Length = 238

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 106/221 (47%), Gaps = 1/221 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  L   +   L  E + V       D   L +   FD +ILD+ L    G+  
Sbjct: 14  ILIVEDDAHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQERAFDLLILDVMLPGEDGYSF 73

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR     + V +L+  S  +D +RG + GA DY++KP+   EL+AR+RA+VRRS   
Sbjct: 74  CRRLRTQGNKSMVLMLTARSLEDDILRGFEVGAQDYLTKPYRLRELLARVRALVRRSGTA 133

Query: 123 AQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               +     +++L  + V    G  + LT  E+ ++  L   ++  L +   L+ ++  
Sbjct: 134 PPEQMGFSSFTLDLGRRQVSRADGSVVELTRTEFDLLAFLLRHQDRALPRGEILDAVWGR 193

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +D F+  L+KKL   +     I T+ G GY + 
Sbjct: 194 DVVVDPRTVDNFVSSLKKKLGWTSTSGFSIHTIRGVGYRME 234


>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
 gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
           [Congregibacter litoralis KT71]
          Length = 236

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/223 (25%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+ A+   + + L+  ++     D  +D   +      D ++LD  L    G E+
Sbjct: 6   VLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGGSGIEL 65

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR L+    +   PV +L+  ++ ++ ++GL+ GADDYI+KPF   EL+ARI+A++RRS 
Sbjct: 66  LRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKALLRRSG 125

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G +   +   +L ++  ++ V +    + +   E+ +++          ++   L+ ++
Sbjct: 126 VGESADRMQVSELVLDGKSRRVYLADEPLDMGPTEFNLLQFFMSHPERAYSRNQMLDQVW 185

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVL 221
                 E + +DV I +LRK L          I+TV G GY  
Sbjct: 186 GANVYVEERTVDVHIRRLRKALQVEGKDYSGLIQTVRGTGYRF 228


>gi|53721717|ref|YP_110702.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126443912|ref|YP_001062018.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126458594|ref|YP_001074970.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134278879|ref|ZP_01765592.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|167722901|ref|ZP_02406137.1| response regulator protein [Burkholderia pseudomallei DM98]
 gi|167741882|ref|ZP_02414656.1| response regulator protein [Burkholderia pseudomallei 14]
 gi|167819064|ref|ZP_02450744.1| response regulator protein [Burkholderia pseudomallei 91]
 gi|167848919|ref|ZP_02474427.1| response regulator protein [Burkholderia pseudomallei B7210]
 gi|167897524|ref|ZP_02484926.1| response regulator protein [Burkholderia pseudomallei 7894]
 gi|167905878|ref|ZP_02493083.1| response regulator protein [Burkholderia pseudomallei NCTC 13177]
 gi|167914184|ref|ZP_02501275.1| response regulator protein [Burkholderia pseudomallei 112]
 gi|167922095|ref|ZP_02509186.1| response regulator protein [Burkholderia pseudomallei BCC215]
 gi|217419131|ref|ZP_03450638.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|237507446|ref|ZP_04520161.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242312817|ref|ZP_04811834.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254183056|ref|ZP_04889648.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|254189719|ref|ZP_04896228.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|254193143|ref|ZP_04899578.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|254264092|ref|ZP_04954957.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
 gi|254299993|ref|ZP_04967439.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|52212131|emb|CAH38148.1| response regulator protein [Burkholderia pseudomallei K96243]
 gi|126223403|gb|ABN86908.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
 gi|126232362|gb|ABN95775.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
 gi|134249298|gb|EBA49379.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
 gi|157810175|gb|EDO87345.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
 gi|157937396|gb|EDO93066.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
           52237]
 gi|169649897|gb|EDS82590.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
 gi|184213589|gb|EDU10632.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
 gi|217398435|gb|EEC38450.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
 gi|234999651|gb|EEP49075.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
 gi|242136056|gb|EES22459.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
 gi|254215094|gb|EET04479.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
          Length = 240

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 7/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  LA  I   L S  F+V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   RVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV IL+  S + D+V GL++GADDY++KP     LVAR RA++RR + 
Sbjct: 69  VCRRIRAFS-NVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 127

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +V G+L+++   +TV  +G  + L   E+ ++ +L+    T L+++  L
Sbjct: 128 GASVEAPASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSRDDIL 187

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             L     +   + +D  I KLR++  +A+   + I+T+WGRGY+   +A D+
Sbjct: 188 KQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWDD 240


>gi|238063518|ref|ZP_04608227.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
 gi|237885329|gb|EEP74157.1| two-component system response regulator receiver [Micromonospora
           sp. ATCC 39149]
          Length = 222

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+     V V   G+ G E+     +D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERNLADAIARGLRKRGMAVDVAYDGDSGHEMAFVTRYDVVVLDRDLPGVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   L  +   T V +L+   ++ D+V GLQ GADDY+ KPF  +ELVAR++A+ RR+ 
Sbjct: 61  QICAELAASGTLTRVLMLTASGTVADRVEGLQLGADDYLPKPFAFDELVARVQALGRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++   DL ++   + V   G  + LT KE+ ++  L   +   ++ E  L  ++D
Sbjct: 121 PAAPPVLAVADLVLDPARRVVTRGGTAVDLTNKEFGVLAELLKARGAVVSSEELLERVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              +P   I+ V +  LR+KL +       IETV G GY 
Sbjct: 181 ANTDPFTTIVRVTVMTLRRKLGD----PPLIETVVGAGYR 216


>gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ
           [Glaciecola sp. HTCC2999]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 138/221 (62%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  L   ++ +L+   F+V + D GE    L K Y +DA++LDLG+  + G 
Sbjct: 1   MRILLVEDDSQLLMQLDQLLQQAGFSVDLADDGEKAQYLLKEYTYDAVVLDLGIPKVDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R   I TPVCIL+   + E KV GL +GADDY++KPF+ +EL+AR+ A++RRS 
Sbjct: 61  SVLKFARENDIKTPVCILTARDTWEQKVLGLDAGADDYLTKPFHHQELLARVNALIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + ++L  + V++    + LT  EY+++E L L ++  ++K     H+YD
Sbjct: 121 GHASSELTCGPIQLHLTQQKVKIDDQELELTAYEYKVLEYLMLNRDKVISKTELTEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +  +I+VF+ +LRKK+ +       IET+ GRGY L
Sbjct: 181 QDFDLDSNVIEVFVGRLRKKI-DPTNTLKPIETLRGRGYRL 220


>gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40]
          Length = 230

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 119/222 (53%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  LA  +   +++  ++  V + G D  +  +  E D ++LDL L  + G +
Sbjct: 8   RVLIVEDEPDLAQLLNEYMQAAQYSTTVINNGTDANDWLQANEVDIVLLDLMLPGMSGLD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           + R +R A    PV +++      D++ GL+ GADDYI KP++  E+VAR +A++RR+  
Sbjct: 68  ICRDIRKAS-DVPVIMITAKVEEIDRLIGLELGADDYICKPYSPREVVARTKAVLRRTLS 126

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + S      + +  +  +V V    I LT  EY+M +LL  +     +++  ++++Y 
Sbjct: 127 DTSSSEDQNQSVVLCEERSSVIVHKQEIELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYT 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  I KLRKKL  AA  ++ I +V+G GY   
Sbjct: 187 DYRVVSDRTVDSHIKKLRKKLQAAAPEQDIIRSVYGAGYKFE 228


>gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493]
 gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
 gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493]
 gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
          Length = 245

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L+   F   +   G +   +      D +ILD+ +    G  
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+ +S   D++ GL+ GADDY+SKPFN  EL+AR+RAI+RRS+G
Sbjct: 66  LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     + + +      S++   + +       I L+  E+ ++  L  R    L+
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L+   +    P  + ID+ I +LR KL         I+T+ G GYVL
Sbjct: 185 RDKLLDLTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 236

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 8/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +       L+     V       +  E  K    D IILD+ L    G +
Sbjct: 6   HILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIMLPGASGLD 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    S P+ +L+   S  D++ GL+ GADDY+SKPFN  EL+ARI A++RR R 
Sbjct: 66  LCRDIRRTS-SVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRMRP 124

Query: 122 H-----AQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   SL+     +++   + +       + L+  EY ++          LT++  +
Sbjct: 125 SGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLTRDQLM 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +   +       + ID+ + +LRKKL +  GG   ++TV G GY      +
Sbjct: 185 DAAKNRTATGFDRAIDIQVSRLRKKLESH-GGPEMVKTVRGAGYFFVPEVE 234


>gi|330818201|ref|YP_004361906.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
 gi|327370594|gb|AEA61950.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
          Length = 247

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 3/227 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLRRLRARNSVLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   ++I  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVIRHGSLSFDQVGRLAYANERVLDLSARELGLLEVLLQRVGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +E     I+V++ +LRKK+  +      I TV G GY L +   +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRILTVRGLGYCLEKAVAE 224


>gi|212638130|ref|YP_002314650.1| OmpR family DNA-binding response regulator [Anoxybacillus
           flavithermus WK1]
 gi|212559610|gb|ACJ32665.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
           [Anoxybacillus flavithermus WK1]
          Length = 226

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL EDD  L   I  +LK +    V     GED  +      +D IILD  L +  G
Sbjct: 4   MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR       + +L+   +++D+V GL++GADDY+ KPF  +EL+AR++A+ RR+
Sbjct: 64  VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123

Query: 120 RGHAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               Q  I   G   VN  + T+   G +I LT +E+Q+++LL   +   LT+++ L+ +
Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    +  +K ID  +  LRKK+ +    +  I+TV G GY + +
Sbjct: 184 WGYDADVSMKTIDATVKLLRKKIGDE--QQQLIKTVRGVGYTIEK 226


>gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
          Length = 221

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  +  +I   L      V +   G     L +   FD ++LD  L  + GF
Sbjct: 1   MRILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  TVLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L ++  ++  E+    + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLVIDRSSRLAELDSQPLSLSRQEFALLEILASRPQRIFSKEELLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++RKKL    G    I T  G GY +
Sbjct: 181 FGNEPTANAVEQYVTRVRKKLQ---GSSVEIRTARGMGYQI 218


>gi|149374413|ref|ZP_01892187.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
 gi|149361116|gb|EDM49566.1| DNA-binding heavy metal response regulator, putative [Marinobacter
           algicola DG893]
          Length = 221

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 86/224 (38%), Positives = 128/224 (57%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+ LA  +   L+   F+V  T    + + L +  E+ AIILDLGL D  G 
Sbjct: 1   MRLLLVEDDRLLADGLSRQLEKAGFSVDTTHTAREAMMLARQEEYRAIILDLGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR  R   I+ PV IL+      DKV GL++GADDY++KPF  EEL+AR+ AIVRRS 
Sbjct: 61  DVLRKWRKDHIAFPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G   SL+  G   ++ + ++++   G    LTG E++++  L  R     +KE  +  LY
Sbjct: 121 GRIHSLVKAGRYELDENRQSLKSDDGTEHSLTGTEFRLLRCLMSRPGQVFSKEQLMEQLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  D P   +I+ +I +LRK + N       I T  G+GY+  +
Sbjct: 181 NLNDTPSENVIEAYIRRLRKLVGNDT-----ISTRRGQGYLFND 219


>gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM
           10507]
          Length = 295

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ LA  I+  L+ E + V +      G  L +  + DA++LDL L D  G  
Sbjct: 68  KILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGGRVLYRQEKPDAVLLDLNLPDGDGMS 127

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
             R +R      P+ +++      D+V GL++GADDY++KPF+   L  R+R ++ R + 
Sbjct: 128 FCREIR-KNSQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLERQQK 186

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G    ++ +G++ ++    +V      ++L+  EY+++ L     N  L KE  L  ++
Sbjct: 187 GGVENHILKSGEIFLDESRTSVRKGAESLNLSMTEYRLLRLFLKNPNQVLLKEQILAVIW 246

Query: 180 DGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           D      +   + V I +LRKK+ +      Y++T+ G GY+  +
Sbjct: 247 DSESNFVDENTLAVNIRRLRKKIESDPSNPMYLKTIHGMGYLWED 291


>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
           TK24]
 gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
           A3(2)]
 gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
           TK24]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD A+   + L LK     V V   GE G+   + +  D ++LDL L ++ G E
Sbjct: 3   RVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLMLPNMSGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R +K   P+ ILS      D V GL++GADDYI KP   E L ARIRA++RR   
Sbjct: 63  VCRRIRESK-RIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLRRVAP 121

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                             DL+V+     V   G  + L   E +++  L+       +++
Sbjct: 122 AQDGGSRDPADAGPERHADLTVDRTTLVVAKHGTELPLAPSELKLLLFLTATPGQVYSRQ 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L  +++     +V+++D  + +LR ++ +      Y++TV G GY  
Sbjct: 182 QLLEQVWEHSFYGDVRLVDACVMRLRARIEDDPRKPVYVQTVRGFGYRF 230


>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
          Length = 225

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD+A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  + +LR K+ +       I TV G GY L   
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224


>gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator
           [Methylotenera mobilis JLW8]
 gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family
           [Methylotenera mobilis JLW8]
          Length = 221

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 6/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L   ++  L+   +   +   G +     K   +D  ILDLGL    G 
Sbjct: 1   MRLLLVEDDPILGKQLQTSLQRAGYATDLATDGIEAEIQGKLEPYDLAILDLGLPKRNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L   R A+I+TPV IL+     +DKV G  SGADDY+SKPF  EEL+AR+ A+++RS 
Sbjct: 61  EILAHWRSAQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLKRSM 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +  S + +    +N   +++    G++  LT  E++++    L     L+K +   H+Y
Sbjct: 121 LNRASELQSTQFKLNEHTQSIIFDDGNQQQLTNVEFRLLRYFMLHPGHILSKSVLTEHVY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  ++ +  +I+V+I +LR+K+     G  +I+T  G+GYV 
Sbjct: 181 EYDEDKDSNVIEVYINRLRQKI-----GSQHIQTRRGQGYVF 217


>gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
 gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas
           maltophilia K279a]
          Length = 229

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 2/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  LA  +   L +        D G   I+    Y+ D ++LDL L    G +
Sbjct: 10  KILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFVRYQPDLVLLDLMLPQRDGVD 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +    PV +++      D++ GL+ GADDYI KPF+  E+VAR+ A++RR R 
Sbjct: 70  LCRELRASS-DVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              +    G L ++  A      G  + LT  EY+++  L         ++  L+ LY  
Sbjct: 129 DPGARAN-GGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLD 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
                 + +D  +  LR+KL++A      I +V+G GY
Sbjct: 188 HRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGY 225


>gi|269125937|ref|YP_003299307.1| winged helix family two component transcriptional regulator
           [Thermomonospora curvata DSM 43183]
 gi|268310895|gb|ACY97269.1| two component transcriptional regulator, winged helix family
           [Thermomonospora curvata DSM 43183]
          Length = 217

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ +   V V   G   +E     E+D ++LD  L  + G 
Sbjct: 1   MRVLVVEDERVLADAIATGLRRQAHAVDVAYDGAGALERTSVNEYDVVVLDRDLPKVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V R L   +    + +L+    +ED+V GL  GADDY++KPF   ELVAR++A+ RR+ 
Sbjct: 61  DVCRDLAGRRYPARILMLTAAGDLEDRVAGLNLGADDYLAKPFAFAELVARVQALGRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    ++++   + V   G  I LT KE+ ++E+L   +   ++ E  L   +D
Sbjct: 121 PPLPPVLERAGITLDPARREVHRDGRPIELTRKEFAVLEVLMRAEGAVVSSERLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V +  LRKKL    G    IETV G GY L
Sbjct: 181 EHIDPFTNVVRVTMMTLRKKL----GEPQVIETVPGVGYRL 217


>gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 6/231 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++I+DD  L   +   L    + V       + IE  +  E   IILD+ +  I GFE
Sbjct: 4   RIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALENDEPSIIILDVMMPHINGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      P+ +L+    + D++ GL+SG DDY+SKPF   ELVARI AI++R+  
Sbjct: 64  TCKRIRKIS-DVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAILKRTER 122

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                    ++  G+L ++L A    + G  + LT  E  ++ L +      + ++   N
Sbjct: 123 QISPKKEKGILEYGNLRIDLSAGRAYLSGIPMELTQGEMSVLSLFARHPFNVMDRDAIQN 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L     +   + +DV + ++R KL +     +YI+TVWG GY+      +
Sbjct: 183 ELNGSDWDAYNRSVDVTVSRVRAKLGDDPKNPSYIKTVWGTGYMFIAEPPN 233


>gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr
           [Photorhabdus asymbiotica]
          Length = 231

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E  NV +   GE  ++L      D ++LD+ +    G  
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLLDE-SIDLLLLDIMMPRKNGIA 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR+    TPV +L+   S  D+V GL+ GADDY++KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRLHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             Q         +   +L +N   +        + LTG E+ ++ LL+      +++E  
Sbjct: 121 SEQQQTDNSPATLQVDNLQLNPGRQEASFANQILDLTGTEFTLLYLLAQHLGQVVSREHL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +   R  P  + ID+ I  LR+KL     G+ + +T+ GRGY++ 
Sbjct: 181 SQEVLGKRLTPFDRAIDMHISNLRRKLPEREDGQPWFKTLRGRGYLMV 228


>gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
          Length = 220

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  LK E F V     G+      +   +  ++LDLGL D  G 
Sbjct: 1   MRVLLVEDDPLIGSGLEQGLKQEGFAVDWVQNGDAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099]
 gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099]
          Length = 238

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 12/232 (5%)

Query: 1   MR----ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD 56
           M+    IL+++DDK +   ++   +    +  V   G +   + +  + D I+LD+ L  
Sbjct: 1   MKSDAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPG 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
             G E+ R LR    STP+ +L+ ++   D+V GL+ GADDY+ KPF+  EL+ARIRA++
Sbjct: 61  KSGLELCRDLRAQ-YSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVL 119

Query: 117 RRS------RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTL 169
           RR+      R  A+ +      +++   + +      R+ LT  E+ +++         L
Sbjct: 120 RRNGAAEPKRATAKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRVL 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           T++  +       D    + ID+ + +LR+K+ +       I TV   GY  
Sbjct: 180 TRDQLIELSGGDSDYSFDRSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 231


>gi|304440456|ref|ZP_07400345.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371208|gb|EFM24825.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 124/229 (54%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+ EDDK +   I L L+ EN+ V+  + GE  +E+      D II+DL + ++ G + 
Sbjct: 6   ILVAEDDKEIRDLIGLYLERENYRVFYAEDGEKCLEIFDREHIDLIIMDLMMPNVSGEDA 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  +R      P+ ILS  S   +K+ GL  GADDY++KPFN  EL+AR+ + +RR++  
Sbjct: 66  ILRIRENSY-VPIIILSAKSQEFEKIIGLNIGADDYMTKPFNPSELMARVASQLRRTKKY 124

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + S++  G+L ++ + KT+ +   +I LT  EY ++E +    N   + +     ++
Sbjct: 125 VKESASIVEIGNLKLDKNQKTIFLNNKKIDLTNIEYLILEFMMSNPNVVFSIDKIYEEVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           +     + K + V I ++R+K+        Y++  WG GY+  +  K++
Sbjct: 185 N-EPAIDPKTVTVHIRRIREKIEADPQNPIYLKVKWGMGYIFVDPRKND 232


>gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
 gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. Ch1-1]
          Length = 260

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLVRSLRQSAYAVDHVKTGVEADTALSMQTFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  EVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +   V    I L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIITVRGLGYCLEK 220


>gi|221640766|ref|YP_002527028.1| winged helix family two component transcriptional regulator
           [Rhodobacter sphaeroides KD131]
 gi|221161547|gb|ACM02527.1| Two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides KD131]
          Length = 228

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVRGWS-QVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVAGTEVKLTRREFDLLRLLASQPGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E + + + V+I +LR KL + A    +I T  G GY  R+
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPLWIFTEPGIGYRFRD 227


>gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family
           [Rhodobacter sphaeroides 2.4.1]
          Length = 228

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   + + L++E   V       +GI+         +ILDLGL D  G E
Sbjct: 6   RILIVDDEPPIRRFLRVALEAEGHRVTEAASVREGIDRAALDAPTLVILDLGLPDGDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           VLR +R      PV +LS  S    KV  L +GA DY++KPF   E +ARIRA++R RS 
Sbjct: 66  VLRTVRGWS-QVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRSG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A S+I   +L ++L A+ V V G  + LT +E+ ++ LL+ +    +T+ M L  ++ 
Sbjct: 125 PAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E + + + V+I +LR KL + A    +I T  G GY  R
Sbjct: 185 PAHEEDSQYLRVYIRQLRAKLGDDAADPRWIFTEPGIGYRFR 226


>gi|254503410|ref|ZP_05115561.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222439481|gb|EEE46160.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 246

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 9/235 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++D + +  ++   L          +      +  K    D ++LD+ +    G  
Sbjct: 11  HILVVDDHRDIRETLARYLVKNGLRATACENASAARKALKAASIDLVVLDIMMPGEDGLS 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R L     S PV +L+ M+   D+V GL+ GADDY++KPFN  EL+ARIRA++RR+  
Sbjct: 71  LCRHLVETG-SMPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRRTSL 129

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    Q  +     ++N+  + +    G  + L+  E+Q++     R    L ++ 
Sbjct: 130 VPKDRDPIEQDRMHFDGWALNVTRRELTDPDGVAVALSSGEFQLLCAFLKRPKMVLNRDQ 189

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++           + ID  + +LR+K+         I+TVWG GY+   + K++
Sbjct: 190 LMDLTTGRTPAVFDRSIDNQVSRLRRKIEEDPKDPKLIKTVWGGGYMFTADVKEQ 244


>gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 241

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +     +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSAPRFIQTVRGRGYVFVPDGEAHAQAH 241


>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. SIP3-4]
 gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. SIP3-4]
          Length = 227

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L+ E F+  V   GE G E      +D I+LD+ +  + G +
Sbjct: 3   KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LRA+R  K +TPV +L+      D++ GL+ GADDY+ KP    E+VAR+RAI+RR++ 
Sbjct: 63  ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 121

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    I  G L++  + +  E  G+ + LT  E+ ++E+L       ++K       
Sbjct: 122 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    + IDV +  +R+K+   A G++YI+TV+  GY L 
Sbjct: 182 LGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLV 225


>gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
 gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM
           14600]
          Length = 230

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLI+D+  L   ++  L++    V     GE+GI L +  E D I+LD+ + D+ GFE
Sbjct: 3   KILLIDDEVELLMLLKNELEARGHRVLTAYRGEEGIALAR-QEPDLILLDIMMPDMNGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RA+R  +I  P+  LS   +  DK+  L  G DD+ISKPF   EL+ARI A +RR + 
Sbjct: 62  VCRAIR-DQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120

Query: 122 HAQSL-------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
             ++        +   DLS++L    V +    I L+ +EY+++ELL+LR     ++E  
Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              ++    E +   +   I K+RKK +  +  K YI TVWG GY   
Sbjct: 181 YERVWGCDAEGDAYTVVEHIRKIRKKFAQVSSEKEYISTVWGIGYRWE 228


>gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum
           lavamentivorans DS-1]
 gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family
           [Parvibaculum lavamentivorans DS-1]
          Length = 223

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD  L   +   L+   + V     GE+G  L     +DA++LDLGL ++ G 
Sbjct: 1   MRLLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGLPEMDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL   R      PV IL+      DKV G  +GADDY++KPF  EE++AR+RA++RR+ 
Sbjct: 61  TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA S +  G + V+  +  V V G  I LT  EY+++  +   +   +++   + HLYD
Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +   I+VF+ +LR+KL     GK+ IETV G GY L
Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL-----GKDVIETVRGLGYRL 216


>gi|282854823|ref|ZP_06264157.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|282581969|gb|EFB87352.1| response regulator receiver domain protein [Propionibacterium acnes
           J139]
 gi|314924507|gb|EFS88338.1| response regulator receiver domain protein [Propionibacterium acnes
           HL001PA1]
 gi|314967282|gb|EFT11381.1| response regulator receiver domain protein [Propionibacterium acnes
           HL082PA2]
 gi|314981749|gb|EFT25842.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA3]
 gi|315092512|gb|EFT64488.1| response regulator receiver domain protein [Propionibacterium acnes
           HL110PA4]
 gi|315102919|gb|EFT74895.1| response regulator receiver domain protein [Propionibacterium acnes
           HL050PA2]
 gi|327328604|gb|EGE70364.1| DNA-binding response regulator TrcR [Propionibacterium acnes
           HL103PA1]
          Length = 243

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 129/226 (57%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L++ED+ +L   + + ++ E ++V   + G   +   +    D I+LD+ L D  G 
Sbjct: 18  IRVLVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGL 77

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R +R+ + + P   L+   +I  ++ GL +G DDYI+KPF+ EE++AR+RA++RR  
Sbjct: 78  EVMRQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRALLRRAG 137

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + S++  GDL+++ D++ V   G  IHLT  E++++          L+K   L+ 
Sbjct: 138 ATEPKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDR 197

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  +++++I  LRKK+    G    I T+ G GYVL+ 
Sbjct: 198 VWNYDFRGQANVVELYISYLRKKI--DRGHTPMIHTMRGAGYVLKP 241


>gi|288939789|ref|YP_003442029.1| winged helix family two component transcriptional regulator
           [Allochromatium vinosum DSM 180]
 gi|288895161|gb|ADC60997.1| two component transcriptional regulator, winged helix family
           [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 121/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A ++   L +  F V     G +   +     + A ILDLGL  + G 
Sbjct: 1   MRLLLVEDDDQVAETVTAGLTAAGFLVERARDGREAWFMGDTEPYAAAILDLGLPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R A    PV ILS      ++V G+++GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  SVLRQWRAAGQRLPVLILSARGDWTERVEGIEAGADDYLPKPFRFEELLARVRALIRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++V G   ++   +T+   G  IHL+ +EY+++  L  +    ++++     LY 
Sbjct: 121 GQPAPVLVHGSFRLDTRRQTLSRDGLPIHLSPQEYRLVSYLMQQAGRVVSQQELTEQLYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +   ++V + ++R+KL     G   I+T  G GY++  +
Sbjct: 181 QDFERDSNAVEVLVGRVRRKL-----GAELIQTRRGFGYLIEAD 219


>gi|254410363|ref|ZP_05024142.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196182569|gb|EDX77554.1| response regulator receiver domain protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 220

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/217 (31%), Positives = 104/217 (47%)

Query: 7   EDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRAL 66
           EDD ALA ++   L  +N++V V + GE G        +D I+LD+ L  + G  + R L
Sbjct: 2   EDDIALAEALTEALVDQNYDVDVVNDGEAGWRQITSLYYDLILLDVMLPKLDGISLCRRL 61

Query: 67  RVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQSL 126
           R       + +++ + +  DKV  L +GADDY+ KP +  EL+ARIRA++RR       +
Sbjct: 62  RSNSYHGSILMITALDTSTDKVNSLDAGADDYVVKPVDLPELLARIRALLRRGGCSVPPV 121

Query: 127 IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPE 186
           +    L ++     V      +HLT KEY  +EL        + +E  + HL+     P 
Sbjct: 122 LEWERLQLDPSCHEVIYNQQPVHLTPKEYSCLELFLRNSQRIINREFIIEHLWSAEATPF 181

Query: 187 VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +   I  LR KL       + IETV   GY L+ 
Sbjct: 182 EDTVKAHIKSLRHKLKAVGAPDDLIETVHSVGYRLKP 218


>gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619]
 gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
          Length = 226

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L++E  +     LG   +E  +    D +ILD+GL DI GF+
Sbjct: 3   HILIVEDEAAIADTLIYALQAEGHSTAWVTLGTAALEQQRQRPADLVILDIGLPDISGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R   
Sbjct: 63  TCRQLRRFS-EVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +    T    ++     +  +   + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 122 RVEPPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDALGVA 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   A     I+T  G GY
Sbjct: 182 SDVGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGY 219


>gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp.
           novicida U112]
 gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis FSC198]
 gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112]
 gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549]
 gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548]
 gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis
           subsp. novicida FTE]
 gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1]
          Length = 228

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 219


>gi|332668985|ref|YP_004451993.1| winged helix family transcriptional regulator [Cellulomonas fimi
           ATCC 484]
 gi|332338023|gb|AEE44606.1| two component transcriptional regulator, winged helix family
           [Cellulomonas fimi ATCC 484]
          Length = 244

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 125/225 (55%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R L+++D+  LA  +   L+ E + V     G   +   +    D I+LD+ L D+ G E
Sbjct: 21  RALVVDDEPTLAELLSTALRYEGWTVEHALSGHAAVRQARATTPDVIVLDVMLPDLTGLE 80

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VLR +R A    PV  L+   ++ED++ GL +G DDY++KPF+ EE+VAR+RA++RR+  
Sbjct: 81  VLRRIRAAHPHVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRALLRRAGA 140

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++++V GDL+++ D+  V   G  I LT  E++++          L+K   L+ +
Sbjct: 141 VSAREEAVLVVGDLTLDEDSHEVTRGGDDIRLTATEFELLRYFMRNPRRVLSKAQILDRV 200

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +  I+++++  LR+K+    G +  + T+ G GYVL+ 
Sbjct: 201 WQYDFGGQANIVELYVSYLRRKI--DKGREPMLHTLRGVGYVLKP 243


>gi|291616710|ref|YP_003519452.1| KdpE [Pantoea ananatis LMG 20103]
 gi|291151740|gb|ADD76324.1| KdpE [Pantoea ananatis LMG 20103]
 gi|327393135|dbj|BAK10557.1| KDP operon transcriptional regulatory protein KdpE [Pantoea
           ananatis AJ13355]
          Length = 236

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+IED+K +   + + L+SE   V+  +  + G+      + D +ILDLGL D  G   
Sbjct: 16  VLIIEDEKEIRRFVRIALESEGLKVFDAETLQRGLIEAATRKPDLVILDLGLPDGDGKTF 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +  LR    + PV +LS     +DK+  L +GADDY++KPF   EL+AR+R  +RR  G 
Sbjct: 76  IGELRQWS-TLPVIVLSARIDEQDKIDALDAGADDYLTKPFGIGELLARVRVALRRHAGQ 134

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           H    +   D++V++ A+ V   G  +HLT  E++++  L       LT+   L+ ++  
Sbjct: 135 HTDPKVSFADVTVDIAARRVLRAGEEVHLTPIEFRLLTTLLNNAGKVLTQRQLLSQVWGP 194

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +++  LR+KL        ++ T  G GY  
Sbjct: 195 NAVEHSHYLRIYMGHLRQKLEANPTQPVHLLTETGIGYRF 234


>gi|254773313|ref|ZP_05214829.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 234

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G 
Sbjct: 9   INVLVVDDEAVLAEMVSMALRYEGWNIATASDGASAIAAARNQRPDVVVLDVMLPDMSGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 69  DVLHKLREENPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + + +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 129 VTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDR 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         I++++I  LRKK+ N  G +  I T+ G GYVL+ 
Sbjct: 189 VWSYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLKP 232


>gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria
           AMMD]
 gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria AMMD]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224


>gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila
           DSM 44928]
 gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family
           [Catenulispora acidiphila DSM 44928]
          Length = 223

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 116/225 (51%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD A+  S+E  L+ + ++V     G   +     +  DA++LD+ + +  G 
Sbjct: 1   MRILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEPNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV RALR A   TP+ +L+    + D+V GL +GADDY++KPF  EE +      + R  
Sbjct: 61  EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEE-LRARLRALLRRS 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++   D+ ++L    VE  G R+ LT  E  ++EL        L++      ++ 
Sbjct: 120 GAQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               P+   + V+I  LR KL    GG   I+TV G GYVLRE  
Sbjct: 180 YDFGPQSNALWVYISYLRGKLEAD-GGARLIQTVRGLGYVLREEP 223


>gi|315646885|ref|ZP_07900000.1| two-component response regulator [Paenibacillus vortex V453]
 gi|315277815|gb|EFU41139.1| two-component response regulator [Paenibacillus vortex V453]
          Length = 235

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++L+++D+  +   ++ +L  E    VY     E   +  +  + + +ILD+ L D  G+
Sbjct: 6   KVLIVDDEADIVRLLQTVLVKEGIDQVYTAATAEAAWDEFQRCQPEIVILDIMLPDGEGY 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV + +R    + P+  LS  +   DK+ G   G DDYI+KPF+ +E+  RI+A  RR+ 
Sbjct: 66  EVCKKIRAVS-NVPIFFLSAKAEEIDKILGFAIGGDDYITKPFSPKEVAYRIKARFRRAD 124

Query: 121 G-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A  LI  G   ++ +   ++  G  I L  KE  ++ LL       ++KE   
Sbjct: 125 PVQLEDKANRLIKVGPFELDEEKVELKKNGKVIPLKPKELGLLTLLLKHPGQIISKESLY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           + ++          + V + +LR+K+ +      Y+ TV G GY L   A+DE
Sbjct: 185 DQVWGEEFFGFDNTVMVHVRRLREKIEDDPSAPRYLLTVKGLGYKLV--AEDE 235


>gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 219

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/222 (35%), Positives = 126/222 (56%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+  L ++I  +L+   + V     G++ +   +   +D IILDL L DI G 
Sbjct: 1   MKILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R   I TPV IL+  +  +DK+ GL  GADDY++KPF+ +EL+ARIRAI RR+ 
Sbjct: 61  EVLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAIGRRAS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +++  DL ++L  K V+  G  + LT K Y ++E L   +   ++ E  L+  ++
Sbjct: 121 TEKKDIVLIDDLEIDLKNKVVKKAGKFVELTPKLYCILEQLVRNRGKIVSYETLLSKCWE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             + P  + +   I  LRK +      K  I+T+ G GY + 
Sbjct: 181 ITEVPSRETMRANIKNLRKLIDPD---KKIIKTIEGVGYRIE 219


>gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct]
          Length = 224

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 6/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED   LA  +   L  + + V     G D         +D IILDLGL   PG 
Sbjct: 1   MRLLLVEDHVPLADELMASLTRQGYAVDWLADGRDAAVQGASEPYDLIILDLGLPGRPGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+  R   ++TPV IL+   S  +++ GL++GADDY++KPF+ EEL   I+A++RR+ 
Sbjct: 61  EILQEWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAH 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A QS +    L ++   + V + G  + LT  E++++    L     L+K     HLY
Sbjct: 121 GLANQSQLEAAGLRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           DG  E +  +I+V +  LR+KL     G+  IET  G+GY 
Sbjct: 181 DGETERDSNVIEVHVNHLRRKL-----GREVIETRRGQGYR 216


>gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329]
          Length = 218

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGAGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +      I+V I  LRKK          I+ + G GY+L +
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APNVAIKNIRGVGYILEK 218


>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
 gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
          Length = 233

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/229 (34%), Positives = 126/229 (55%), Gaps = 8/229 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  IL++EDDKA+ + I   L   ++N +  + GE  + L   ++ D IILDLGL DI 
Sbjct: 2   MKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDID 61

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++ +R    + P+ ++S  S  +DK+  L SGADDY++KPF+ +EL+ARIR  +R+
Sbjct: 62  GVDIIKKIRAWS-NCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRK 120

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                ++    +  + GDL ++  +  V V     HLT  EY+++ LL+      LT   
Sbjct: 121 MNYDNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTY 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            L  ++    E EV  + VF+  LRKK+        YI+T  G GY L 
Sbjct: 181 ILKEIWGVAYESEVPSLRVFMATLRKKIEKNCEKNTYIQTHIGVGYRLV 229


>gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
 gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7]
          Length = 230

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 119/224 (53%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+D+  +   + + L ++ + V     GE+G+        D ++LDLGL D  G ++
Sbjct: 8   ILLIDDEPQIRKFLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGLPDRDGQDI 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           LR LR    + PV +LS  +S  +KV  L  GA+DY++KPF  +E +AR+R ++R++   
Sbjct: 68  LRDLREWS-AVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQG 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+L  + V + G  + LT KEY ++  L+      +T++  L  ++ 
Sbjct: 127 ESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQLLRDIWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                +   + V +  LR+KL +      ++ T  G GY LR++
Sbjct: 187 PTHVEDTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRLRDS 230


>gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
 gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Roseobacter sp. AzwK-3b]
          Length = 219

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  L  ++   + ++  +V      +   +  +   +D I+LDL L D  G 
Sbjct: 1   MRILLIEDDTTLGAAVRDQIAADGRSVDWVTRLDAADDALRATSYDLILLDLMLPDGRGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ALR+    TPV IL+ +  + D++ GL +GADDY+ KPF+  EL ARI ++ RR  
Sbjct: 61  GFLKALRLRGDVTPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYC 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G+   +I  G + V+L A +V   G  + LT +E+ + E    R    L+K      LY+
Sbjct: 121 GNPNPIISHGPIDVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEKLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E E   I+V + +LRKKL     G   IET  G GY L
Sbjct: 181 FGAEVESNTIEVHVSRLRKKL-----GAGIIETERGMGYRL 216


>gi|126699934|ref|YP_001088831.1| two-component response regulator [Clostridium difficile 630]
 gi|255101465|ref|ZP_05330442.1| two-component response regulator [Clostridium difficile QCD-63q42]
 gi|255307338|ref|ZP_05351509.1| two-component response regulator [Clostridium difficile ATCC 43255]
 gi|115251371|emb|CAJ69203.1| Two-component response regulator [Clostridium difficile]
          Length = 238

 Score =  246 bits (630), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  L+ +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ +LS  S   DK+ GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIRE-KRNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          + +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++++       + I V I ++R+K+        Y++ VWG GY + +
Sbjct: 184 HEIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 235


>gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
 gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_33]
          Length = 227

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++ILL+EDDK +   + L L+ + + V     GE G+EL     +D I+LDL L    G 
Sbjct: 5   IKILLVEDDKNIQRLLTLELRHKGYLVDSAYDGEQGMELFTKNYYDVILLDLMLPKKSGK 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ +  R    +TP+ I++   SI DKV  L  GA+DYI KPF  EEL+ARIR   R   
Sbjct: 65  ELCQEFRKLN-NTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKE 123

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                      D+ ++L AK V ++   ++LT  E+ ++E     K  + ++E  +  ++
Sbjct: 124 NSVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 184 GYDFDGEEKIVDVYINSLRKKIDVDN---KYIHTIRGFGYMFQ 223


>gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1]
 gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 110/218 (50%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L+++  +     LG   ++  +    D IILD+GL DI GFE
Sbjct: 3   HILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGLPDISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR+RAI++R   
Sbjct: 63  TCRQLRRF-TEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A+   V     ++     +  +   + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 122 RAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDALGVA 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   A G   I+T  G GY
Sbjct: 182 SDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGY 219


>gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
 gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
          Length = 246

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/242 (30%), Positives = 134/242 (55%), Gaps = 15/242 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           ++IL++EDD  + + I   L++  +   +   G+  +     + +D ++LDLGL D  G 
Sbjct: 5   IKILIVEDDGPIRNLIATALQTNAYKYDLAANGKTALLALSTHHYDIVLLDLGLPDKDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E++  LR    +TP+ ++S  ++ EDK+  L +GADDY++KPF+ EEL+AR+R+ +RR++
Sbjct: 65  EIIDQLRTFS-TTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRSTLRRAQ 123

Query: 121 -------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +     GDL ++  ++TV  QG  +HL   EY ++ LL+      LT + 
Sbjct: 124 FLENQKSQREEIAFENGDLKIDYPSRTVYFQGKELHLMPIEYNLLCLLAHNVGRVLTHQY 183

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL------RENAKD 227
            L+ ++    E ++  + V++  LRKK+   +  K YI+T  G GY +      +E++ D
Sbjct: 184 ILDKVWTNAMESDLSSLRVYMTTLRKKIEKNSMQK-YIQTHIGVGYKMIRVTDTKEDSND 242

Query: 228 ET 229
           E 
Sbjct: 243 EA 244


>gi|300785941|ref|YP_003766232.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299795455|gb|ADJ45830.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 218

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+ED++ LA  +   L+   F V V   G   ++ C    +D ++LD  L  + G 
Sbjct: 1   MRVLLVEDEQPLAKYVAAGLRKHGFAVDVAFDGRTALDKCTVTPYDVVVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V R L     +  V +L+   ++ED+V GL  GADDY+ KPF   ELVAR+RA+ RRS 
Sbjct: 61  AVCREL-AGHGTARVLMLTASGTVEDRVEGLTLGADDYLGKPFAFSELVARVRALSRRST 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G + ++   +T E  G  +HLT KE+ ++E L       ++ E  L+ ++D
Sbjct: 120 PAMPPVLRAGGVVLDPARRTAERAGRLLHLTPKEFGVLEHLLAADGAVVSAETLLDKVWD 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P    + + +  LR+KL +       IETV   GY +  
Sbjct: 180 EHADPFTNAVRITVGTLRRKLGD----PPPIETVPSAGYRIVP 218


>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
 gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
           magneticus RS-1]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 5/225 (2%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  +L+I+DD  L   +   L    + V     G +  +  +      +ILD+ +    
Sbjct: 1   MKDVVLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQLRPSVVILDIMMPGKD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G EVL  +R A  + PV +L+      D+V GL+ GADDY+ KPFN  EL+ARIRA +RR
Sbjct: 61  GLEVLADIRRAS-TVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRR 119

Query: 119 SRGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               A +   + +G +S++L  +T+ +   R  L+  E+ ++  L    +  L+++  LN
Sbjct: 120 HAPEAPNKGRLKSGGISLDLSLETLTIGTTRYELSTVEFNVLSALMRNPDIPLSRDALLN 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +        + +DV I KLR  L    G +  I+TVWG GY  
Sbjct: 180 LGWGEDAVVSDRSVDVHISKLRSILKQHHGHEKRIKTVWGFGYKF 224


>gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 221

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD ALA  +   L+           GED   L     +  I+LD+GL  + GF
Sbjct: 1   MRVLVVEDDAALARGLVASLRLAGLAADHEADGEDAARLALSEPYSLIVLDIGLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  + PV IL+   ++ D+VRGL  GADDY+ KPF   E  AR+RA +RR +
Sbjct: 61  EVLRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G L+++     V + G  + L  +E  ++ +L  +    + KE   N ++ 
Sbjct: 121 GQPNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++++I +LRKKL     G   I T+ G GY+L
Sbjct: 181 FDDEVAPNALELYIARLRKKLQ--PKGPE-IRTIRGLGYLL 218


>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
           BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
          Length = 231

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   + + L      V     G   +        D I+LD+G+ +  G E
Sbjct: 4   RILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +R      P+  LS      D++ GL+ G DDY++KPF+  ELVAR+  I+RR   
Sbjct: 64  VCRRIRRTS-QVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVAT 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             R      +V G L ++            + LT  E+ ++  L  R     ++E  ++ 
Sbjct: 123 GHRSDEAEELVHGRLRLDPQQHLARFGDTPLTLTALEFSIVRTLLTRPAVVFSREQIMSA 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            Y    +   + ID  I  +R KL+ A G  + IETV G G+ L
Sbjct: 183 AYQLNIQVSDRTIDSHIRNIRAKLATA-GCDDAIETVHGVGFRL 225


>gi|71733837|ref|YP_275879.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487945|ref|ZP_07005984.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71554390|gb|AAZ33601.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157496|gb|EFH98577.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323421|gb|EFW79509.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327618|gb|EFW83630.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876275|gb|EGH10424.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330986740|gb|EGH84843.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 245

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L +    V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALAAARIIAEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R++R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 67  ICRSVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN]
 gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923]
 gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA
 gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae]
 gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae]
 gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 4/210 (1%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +E  L+   F V     G + +        DAI+LD+ +  + G  V+ ALR      PV
Sbjct: 23  LERGLRLSGFEVSTAIDGAEALRNATETRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGDL 132
           C+LS  SS++D+V GL++GADDY+ KPF   ELVAR++A++RR   +   +   I  G L
Sbjct: 83  CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETIAVGPL 142

Query: 133 SVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDV 192
            V++  +   V G  + LT +E+ ++ +L+  K T L++   L  ++      +  ++DV
Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWGYDFAADTNVVDV 202

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           FI  LR+KL     G   + TV G G+VLR
Sbjct: 203 FIGYLRRKLEAN-SGPRLLHTVRGVGFVLR 231


>gi|28868878|ref|NP_791497.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213969509|ref|ZP_03397645.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
 gi|301385965|ref|ZP_07234383.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058710|ref|ZP_07250251.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           K40]
 gi|28852117|gb|AAO55192.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925605|gb|EEB59164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
          Length = 247

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD  LA      L++   +V +   G          + D +ILDL L    GF 
Sbjct: 9   HVLIVEDDLRLAELTSDYLQNNGLSVSIEGNGALAAARIIDEQPDLVILDLMLPGEDGFS 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 69  ICRTVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 127

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 128 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 188 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 239


>gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/229 (26%), Positives = 108/229 (47%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   +E  L  E ++V     G   +E+ + Y  + ++LD+ +  + G E
Sbjct: 12  RVLVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIE 71

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             R LR       T +  L+  S    +V     GADDYI+KP     L++RI A+ RR 
Sbjct: 72  AGRQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRRE 131

Query: 120 RGHAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              A     I   DL +N    +V     ++ L  KE++++  L+   N   ++E  L  
Sbjct: 132 AQKADPGEQIQIADLLINRKNYSVSQNDKQVILPKKEFELLFFLAQHPNKVCSREELLQK 191

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++        + +DV I KLR+K+ +      +I T+ G GY+  +  +
Sbjct: 192 IWGADIYVLERTVDVHIRKLREKIGDT-----HIRTLKGVGYMFTDQPE 235


>gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 220

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGEAYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   +I D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|28211551|ref|NP_782495.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
 gi|28203992|gb|AAO36432.1| regulatory component of sensory transduction system [Clostridium
           tetani E88]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 3/221 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L+EDDKA+A ++ L+L+SE F V       +        +FD  ++D+ L D  GF 
Sbjct: 3   RIFLVEDDKAIARNLMLLLRSEGFTVTHAPTRSEAFAALAGNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  +   PV  L+        V GL  GADDYI+KPF   EL+ARI   +R+S G
Sbjct: 63  VCTEIKETQ-DVPVIFLTASGDEASVVTGLNMGADDYITKPFRSRELIARIGTALRKS-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            ++S      L V+  +  V+  G+ + L+  EY+++ +      + +T+   L+ L+D 
Sbjct: 121 RSRSDFEIRGLHVDTASGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRGRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      + V+I +LR+K+ N       I TV G GY L
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIENDPASPQIILTVRGTGYRL 221


>gi|159037022|ref|YP_001536275.1| two component transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157915857|gb|ABV97284.1| two component transcriptional regulator, winged helix family
           [Salinispora arenicola CNS-205]
          Length = 252

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ALA  +   L+   F+        + + +      +  I+D+ L D  GF+
Sbjct: 27  RVLVVDDEPALAELLLRTLRVAGFDARSAGSRAEALVVAGELAPELAIVDVMLPDGSGFD 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           +   LR       V  L+   S+ED++ GL  G DDYI+KPF+  E+VAR+ A++RR   
Sbjct: 87  LAHDLRRPLPDLAVVFLTARDSLEDRLTGLNLGGDDYITKPFSVAEVVARVNAVLRRLGG 146

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           R  A   +   DL ++ DA TV   G  + L+  E++++  L       L+K+  L  ++
Sbjct: 147 RPDASHRLTLADLVLDEDAHTVTRAGVAVELSPTEFRLLRHLLENAGRVLSKQQILAQVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                 +  +++ F+ +LR+K+   A G   + TV G GYVLRE   +
Sbjct: 207 QYDFPGDPGVVEKFVSQLRRKI--DASGPPLLHTVRGFGYVLREPRPE 252


>gi|149178895|ref|ZP_01857473.1| phosphate regulon response regulator PhoB [Planctomyces maris DSM
           8797]
 gi|148842234|gb|EDL56619.1| phosphate regulon response regulator PhoB [Planctomyces maris DSM
           8797]
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 7/224 (3%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IEDD++L+  +   L+ E ++  V   G DG+   +    D IILDL L  + G EV R
Sbjct: 1   MIEDDRSLSEVLAYNLRQEKYDAVVALDGMDGLRQAQLKTPDLIILDLMLPQMDGLEVCR 60

Query: 65  ALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
            LR      +  + +L+  S   D+V G   GADDY++KPF+ + L+ RI+A++RR  S 
Sbjct: 61  RLRSDPVTSNVLILMLTAKSEETDQVVGFTLGADDYVTKPFSVKILLERIKALLRRRESN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV+  + ++     V +    I LT  E++++E L  +     ++   ++    
Sbjct: 121 GEASDTIVSQGVMIDRRRHRVMIDDVPISLTRSEFELLEALVRQPGRVFSRAELIDAALG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                  + IDV I  LR+KL         IETV G GY  R+ 
Sbjct: 181 DDALVLERTIDVHIRALRQKLE---KHSELIETVRGVGYRFRDP 221


>gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 134/224 (59%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L  +I   +      + +   G    ++    E+D ++LDL L D+ G 
Sbjct: 1   MRILVVEDDRILGEAISQRISRMGHGLDLAQTGLQANQMLALQEYDLMLLDLNLPDMTGN 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR    +TPV +L+    I+D++  L  GADDY++KP +  EL AR RA++RRS+
Sbjct: 61  QILQTLRKKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+ I  G++S+NL A +V V G+ I L  +E++++E+        L+KE  + H+Y+
Sbjct: 121 GQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIEHIYN 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             + P   +I++++ +LRK L ++      I T+ G GY+L ++
Sbjct: 181 FNENPNSSVIEIYVARLRKSLQDSDIN---IRTIRGLGYLLEKH 221


>gi|254975899|ref|ZP_05272371.1| two-component response regulator [Clostridium difficile QCD-66c26]
 gi|255093285|ref|ZP_05322763.1| two-component response regulator [Clostridium difficile CIP 107932]
 gi|255315032|ref|ZP_05356615.1| two-component response regulator [Clostridium difficile QCD-76w55]
 gi|255517702|ref|ZP_05385378.1| two-component response regulator [Clostridium difficile QCD-97b34]
 gi|255650814|ref|ZP_05397716.1| two-component response regulator [Clostridium difficile QCD-37x79]
 gi|260683895|ref|YP_003215180.1| two-component response regulator [Clostridium difficile CD196]
 gi|260687555|ref|YP_003218689.1| two-component response regulator [Clostridium difficile R20291]
 gi|306520712|ref|ZP_07407059.1| two-component response regulator [Clostridium difficile QCD-32g58]
 gi|260210058|emb|CBA64143.1| two-component response regulator [Clostridium difficile CD196]
 gi|260213572|emb|CBE05342.1| two-component response regulator [Clostridium difficile R20291]
          Length = 238

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 12/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +  +IE  L+ +NFNV     G + +++    +   II+D+ + ++ G + 
Sbjct: 5   ILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLDGLKT 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              +R  K + P+ +LS  S   DK+ GL  GADDYI+KPFN  EL AR+++ +RR    
Sbjct: 65  TLKIRE-KRNIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRRYINL 123

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
                          + +G L +N D K V + G  I +T  EY+++ LL  RK    + 
Sbjct: 124 GDFSNTNNSNDTNYILKSGGLELNTDTKIVSLDGEEIKMTPLEYKILTLLMSRKGKIFSS 183

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                ++++       + I V I ++R+K+        Y++ VWG GY + +
Sbjct: 184 REIYENVWNEDAYSCERTIAVHIRRIREKIEINPKEPKYLKVVWGIGYKIEK 235


>gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521]
 gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+ +DD  +   + ++L  + +++     G++ + L     F  I+LD+ +  + GF 
Sbjct: 9   KILIADDDAEILDILSILLSGDGYDITTASNGDEVVSLADE-SFSLIVLDVNMPKLSGFL 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
               +R  K   P+  L+  +   DK  G  +G DDY+SKPF+  E + R++A++RR   
Sbjct: 68  ACSEIR-KKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQ 126

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                   +  +++  D+ +N D KTV V G  I LT  EY ++ELL+L +    + E  
Sbjct: 127 YGSIPTQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENI 186

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            + +++          I V I  LRKK+        YI+T WGRGY +
Sbjct: 187 YSSIWNDSYIGASDNAIMVHIKNLRKKIEKNPKEPKYIKTSWGRGYYI 234


>gi|167753811|ref|ZP_02425938.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
 gi|167658436|gb|EDS02566.1| hypothetical protein ALIPUT_02096 [Alistipes putredinis DSM 17216]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 119/225 (52%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+++L   ++  L+ E + V V    E  + +     +  ++LD+ + +I GF+
Sbjct: 5   KILVVDDEESLCEILKFNLELEGYEVDVAYSAEQALAM-HPERYSLLLLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R L+ +  +   P+   +   + +D V GL  GADDYISKPF+  E+ AR+R+++RRS
Sbjct: 64  MARMLKSSPETAAVPIIFCTAKDTEDDTVAGLNLGADDYISKPFSMREVTARVRSVLRRS 123

Query: 120 RG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    +  I    L ++L +K   V G  + LT KE++++ LL        ++E  L  +
Sbjct: 124 QARQEEEAICFEGLCLDLQSKVCRVNGQEVPLTKKEFEILTLLLSHPRVIFSREQILARV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++       + IDV I +LRKK+        ++ T  G GY   +
Sbjct: 184 WNNEVIVLDRTIDVNITRLRKKIGPYGS---HLVTRLGYGYGFEK 225


>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
           YCH46]
 gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
 gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis 638R]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +   L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKLAV 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|118577356|ref|YP_899596.1| two component transcriptional regulator [Pelobacter propionicus DSM
           2379]
 gi|118504861|gb|ABL01343.1| two component transcriptional regulator, winged helix family
           [Pelobacter propionicus DSM 2379]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 2/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ LLIED++ +A  I+  L+  N  V +   G +G+ L +  E+  +ILDLG+ +I G 
Sbjct: 1   MKYLLIEDERKIAGFIKRGLEEGNCQVVIVGDGAEGLRLAQTGEYALVILDLGIPEIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR      PV IL+     E+ V GL++G+DDY+ KPF   EL ARI A++RR+ 
Sbjct: 61  SVLKELRSTGNQVPVLILTARKLPEEVVAGLEAGSDDYMGKPFAFRELRARIAALLRRAG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  S +V G+L ++         G+ I L+ KEY ++E +    N  LT+ M  ++ + 
Sbjct: 121 RNRGSEVVFGELKLDPVTHRFWRSGNEISLSEKEYCLMEYMIRNPNQILTRSMIASNCWV 180

Query: 181 GRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     IIDV++  LR+K+ +       I TV G+GY+LRE
Sbjct: 181 NTFEGKFSNIIDVYVTYLRRKV-DVGYPTKMIHTVRGKGYILRE 223


>gi|238925292|ref|YP_002938809.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
 gi|238876968|gb|ACR76675.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Eubacterium rectale ATCC 33656]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+++     + LK+ N+ V   +  ++  +       D I+LD+ L D  G+++
Sbjct: 8   IYIVEDDESIREIESIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYDI 67

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR        P+ +++  ++  D ++G   GADDYI KPF+  EL+ R++A++RR+ 
Sbjct: 68  VRKLRKRPATQDIPIIMVTAKTTEMDMIKGFDGGADDYIKKPFSIMELITRVKALLRRTA 127

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL ++ +   V V    + LT KEY+++ LL   +   +T+E+ +  ++D
Sbjct: 128 KEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVWD 187

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E + +D+ I  LR KL +       I+TV   GYV+ 
Sbjct: 188 TDFEGETRTVDMHIKTLRHKLGDYGS---RIKTVRNVGYVIE 226


>gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++++ LK+  + V+V   G   +++   +  D +ILDLGL D+ G E
Sbjct: 3   RVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR      P+ +LSG +   DKV  L +GADDY++KPF  +EL+AR+RA +RRS G
Sbjct: 63  VIRGLR-GWTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRRSSG 121

Query: 122 -HAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q ++  G+  V+L AK V +  G  + LT  E+ ++E+L       +++   L  ++
Sbjct: 122 GTEQPVVTVGEAKVDLAAKRVTLGNGEDVRLTPTEWHLLEVLVRHPGKLMSQRQLLLEVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E     +  ++ +LR+KL        ++ T  G GY    
Sbjct: 182 GPGYETAGGNLRFYMAQLRRKLEPDPARPQHLRTEPGMGYRFEP 225


>gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG
           19424]
 gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424]
          Length = 231

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A +I   L+++        LG D +   +  + D +ILD+GL D+ GFE
Sbjct: 8   RILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGLPDLSGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      PV  L+      D++ GL+ GADDY+ KPF+  EL AR+RAI+RR+RG
Sbjct: 68  VCRTLRTFS-DAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 HAQSLIV--TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +         + + D   +   GH + LT  EY ++  L        ++   ++ ++
Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVL 221
            G  +   + +D  I  LR KL   +A G   I T  G GY L
Sbjct: 187 AGALDTSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229


>gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU]
 gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB900]
 gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB056]
 gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB058]
 gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB059]
 gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
 gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE]
 gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Acinetobacter baumannii
           ACICU]
 gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978]
 gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter
           baumannii AB0057]
 gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii
           AB307-0294]
 gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter baumannii ATCC 19606]
 gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii]
 gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii]
 gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii]
 gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii]
 gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii]
 gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii]
 gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii]
 gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii]
 gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii]
 gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii]
 gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2]
 gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
 gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013150]
 gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6013113]
 gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii
           6014059]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/225 (36%), Positives = 128/225 (56%), Gaps = 11/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+   F V   + G DG+      +FD I+LDLGL  + G +
Sbjct: 3   KILMIEDDFMIAESTITLLQYHQFEVEWVNNGLDGLAQLAKTKFDLILLDLGLPMMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R  + +TPV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKQIRQ-RAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSGV 121

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            AQ      L+ +GDL +N++      +G RI L+ +E+ ++  L    N   +K    +
Sbjct: 122 EAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLED 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     I+V++  LR KL     GK++I T+ G GY L
Sbjct: 182 KLYDFDSDVTSNTIEVYVHHLRAKL-----GKDFIRTIRGLGYRL 221


>gi|167580382|ref|ZP_02373256.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
           TXDOH]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 229


>gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
 gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 241

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 235


>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
           fluorescens Pf0-1]
          Length = 227

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL AR+ A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRRT 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  + TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFAKPLLHTVHGVGYRLAE 222


>gi|332662904|ref|YP_004445692.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332331718|gb|AEE48819.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/223 (31%), Positives = 117/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+  +A  I   L+  +F  +V       ++L        +I DL +  + G E
Sbjct: 3   KILIIEDEAQIAGLISQTLQEMSFKTFVALDSSTALDLFDLISPQLVITDLVMPQVSGHE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R  K S P+ +L+ + S ED V+GL +GADDY+ KPF   EL AR+RA++RRS  
Sbjct: 63  LCAQIRNRKRSIPILMLTALGSTEDIVKGLDNGADDYMVKPFRIPELQARVRALLRRSAS 122

Query: 122 HAQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +  + I    DL +N D K V      I LT  E++++E L   K     +   L  ++ 
Sbjct: 123 NTTAQISRLADLVLNHDTKEVSRNNESIKLTATEFRLLEYLMSHKGRLKARMEILEEVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +P   ++DV++  LR K+ +    K  + T  G+G++L+E
Sbjct: 183 INFDPGTNVVDVYVSYLRNKI-DKPFEKKLLHTQIGQGFILKE 224


>gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
 gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
           UMN179]
          Length = 220

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 115/220 (52%), Gaps = 7/220 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +A+ +   LK  ++ V   + GE  +   K   +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIANVLSANLKDASYAVDWVENGELALTAVKSQPYDLVLLDLGLPKKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL  LR  + S P+ IL+    +  +++GL  GADDYI KPF+  EL+ARIR  +R+  
Sbjct: 61  EVLAQLRQQQFSFPIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRKQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVE--VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           GH  + I  G+L +NL    V+         LT KE+ +++ L        ++    + +
Sbjct: 121 GHHTAEIRYGNLLLNLKTYQVQNLTTQETQQLTNKEFAILQTLLQHPGVIYSRSDLEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRG 218
           Y   +E E   ID  I  LRKKL     GK  I+ + G G
Sbjct: 181 YGWGEEVESNAIDFLIHALRKKL-----GKEAIKNIRGVG 215


>gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
 gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +    +  L    + V V   G + +E+ K    D II D+ +  + G+++
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMDGYDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR  RG
Sbjct: 65  ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +N  +  V+V    + LT K ++++ LL+       +K      ++  
Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVGLDLTVKSFELLWLLASNPERVFSKTDLYEKVWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223
               +   ++V I  LR++L+  A  +   I+TVWG GY + +
Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|326315247|ref|YP_004232919.1| winged helix family two component transcriptional regulator
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372083|gb|ADX44352.1| two component transcriptional regulator, winged helix family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 236

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/226 (29%), Positives = 112/226 (49%), Gaps = 10/226 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   +   L+ E + V+      +G+      + D ++LDLGL D  G  +LR
Sbjct: 10  VIEDEPQIRRFVRGALEEEGWQVHEAATLREGLSAAGTRQPDLLVLDLGLPDGDGLTLLR 69

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122
            +R    + P+ +LS  +   DK+  L +GADDY++KPF   EL+AR+RA +RR R    
Sbjct: 70  DVRNWS-AVPIIVLSARTDESDKIAALDAGADDYLTKPFGTGELLARVRANLRRPRPATG 128

Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A+ +   GD+ V+  A+ V   G  +HLT  EY+M+ +L       +T+   L
Sbjct: 129 QGLQAEAAEPVFRFGDIEVDRGARLVRRAGTVVHLTPTEYRMLTVLVANAGRVITQRQLL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + +++  LR+KL        ++ T  G GY L
Sbjct: 189 REVWGPARSDQSHYLRIYMGHLRQKLEADPAQPRHLLTETGVGYRL 234


>gi|229194660|ref|ZP_04321454.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
 gi|228588818|gb|EEK46842.1| hypothetical protein bcere0001_2480 [Bacillus cereus m1293]
          Length = 209

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 8/203 (3%)

Query: 27  VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIED 86
           V      ++ ++L     ++ +ILDL +  + G EV R LR  K + P  +L+      D
Sbjct: 2   VDTAINDDEALQLFNQNNYNLVILDLMMPKVDGIEVCRKLR-DKTNVPRLMLTAKDHEVD 60

Query: 87  KVRGLQSGADDYISKPFNKEELVARIRAIVRR-------SRGHAQSLIVTGDLSVNLDAK 139
           K+ GL  GADDYI+KPF+  E++AR++A++RR       +    ++ +    L ++L+  
Sbjct: 61  KILGLSIGADDYITKPFSIHEVIARVKALMRRFLVLGSDANIQEKTTLTFKGLLIDLNIY 120

Query: 140 TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRK 199
           TV      I+LTGKE ++++  +       TK     +++D     +   + V I KLRK
Sbjct: 121 TVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQLFRNVWDDNYIEDDNTVMVHIRKLRK 180

Query: 200 KLSNAAGGKNYIETVWGRGYVLR 222
           K+        +I+TVWG GY   
Sbjct: 181 KIEVDPSNPKFIQTVWGIGYKFV 203


>gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
 gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD+  A+ I   LKS  F V     G DG+      ++D I LD  L  + G  
Sbjct: 3   RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  +R   + TPV +LS +  ++++VRGL++G DDY++KPF+ EE+ AR+  ++RRS+ 
Sbjct: 63  ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 122

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                ++ +  G L+++L ++ V   G  I L   EY+++E +      T+T+ M    +
Sbjct: 123 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +    +P   +IDV + +LRKK+ +       I TV G GY+L
Sbjct: 183 WGYHFDPGTNLIDVHMGRLRKKI-DPPDATPMIRTVRGAGYIL 224


>gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
 gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria IOP40-10]
          Length = 241

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +     +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGEAHAQAH 241


>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  I+LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDTEQ 225


>gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELTARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPIIQTVRGSGYMLR 224


>gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
 gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP
           101886]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 119/236 (50%), Gaps = 9/236 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  +   ++  L    +NV     G++          D I+LD+ L    GF 
Sbjct: 6   RILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIMLPGDDGFT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R    S P+ +L+ +S   D++ GL+ GADDYI+KPF+  +LVARIRA++RR++ 
Sbjct: 66  LCKYVRQDS-SVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRRTQQ 124

Query: 122 HAQSL------IVTGDLSVNLDAKTV--EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
             ++       I      ++  A+ +   V G  + +T  ++ ++ L     NT L +  
Sbjct: 125 LQETTLSKPKAIRFAQWRLDPVAQRLNHLVTGQEVEMTSSDFALLMLFIESPNTLLDRNA 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
             N       +P+ + IDV + +LR++L +       I+TV G GY+   +   E+
Sbjct: 185 ISNATRGRDAQPQERGIDVQVSRLRQRLKDNGRQSTIIKTVRGNGYMFVADITYES 240


>gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
 gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3]
 gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28]
 gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29]
          Length = 216

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHFGDVRVIDTHIKNLRKKLEI-----PYIKTVKGIGYKIE 215


>gi|262201364|ref|YP_003272572.1| response regulator receiver [Gordonia bronchialis DSM 43247]
 gi|262084711|gb|ACY20679.1| response regulator receiver [Gordonia bronchialis DSM 43247]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    + V     G + +E       D  I+D+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLTFNGYAVDTAGDGIEALEKIVSDRPDVAIMDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR A    P+ +L+   ++ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVCRRLRSAGDDLPILVLTARDTVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAV 120

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
              +     +   DLS++   + V      I LT  E+ ++E+L       L++   L  
Sbjct: 121 PDEEADSETLRFADLSLDPVTRDVSRGDRHISLTRTEFALLEMLMANPRRVLSRSRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    I TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GEDRLIHTVRGVGYVLRETPP 228


>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
 gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
           [Cyanothece sp. PCC 7822]
          Length = 813

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 10/236 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL IEDD++LA  +  +L  +++ V +   GE G  L     +D I+LD  L  + G 
Sbjct: 1   MKILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGI 60

Query: 61  EVLRALR-------VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIR 113
           E+   LR            TP+ +++G+ +   KV GL +GADDY+ KP + EEL+ARIR
Sbjct: 61  ELCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIR 120

Query: 114 AIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           A++RR  G    ++  G L +  ++  V     +I L  KEY+++EL         +   
Sbjct: 121 ALLRRKSGERAPMLKWGQLCLCPNSGQVTYLEQKIQLAQKEYKLLELFLRNPEQIFSLSR 180

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR--ENAKD 227
            ++ L+     P    +   I  LR+KL  A G  + +ET++  GY L+  + A+D
Sbjct: 181 LVDSLWSIEKTPTEGAVRAHIKGLRQKLKQA-GVPDPLETIYKMGYRLKKVDQAED 235



 Score = 68.7 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 29/184 (15%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTD----- 56
           +IL+++DD +L   +  +L    + + +    +   E+ +  E D +ILD+  +      
Sbjct: 506 KILIVDDDSSLLKLLSTLLTPSGYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSD 565

Query: 57  --------IPGFEVLRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKE 106
                     G E+ + +R        PV +LS  + +E   RG  +GADD++SKP    
Sbjct: 566 QEKERSSFFNGIELCQVIRNDLRWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVAS 625

Query: 107 ELVARIRAIVRRSRGHAQSLIVTGDLS-VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRK 165
           EL+ R+R+ +++ +     +I   +L+ V+L  K +E       LT         L+ R+
Sbjct: 626 ELLIRVRSRLKQRKMW--KIIEYDELTGVSLRRKALE------DLTRA-----IHLAQRQ 672

Query: 166 NTTL 169
               
Sbjct: 673 GQPF 676



 Score = 63.3 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 4/130 (3%)

Query: 3   ILLIEDDKALAHSI-ELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGL--TDIPG 59
           +L++E D  L   + +  L        V    ++  +L    + + ++LDL    ++  G
Sbjct: 382 LLILESDMTLRQLLVKEALT-WGIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEPTG 440

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + L  L     S P  IL+   S E ++   + G   ++ KP    +++A +   +R++
Sbjct: 441 LQFLATLNRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTLRQA 500

Query: 120 RGHAQSLIVT 129
              +  +++ 
Sbjct: 501 SESSAKILIV 510


>gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
 gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa
           W1219]
          Length = 222

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 112/222 (50%), Gaps = 3/222 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++D++ +   I+   K E +   +   G + +E  K +  D +++D+ + ++ GF  
Sbjct: 4   ILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHSIDLVVMDVMMPELDGFSA 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  ++  + + PV +L+ +    DKV G + G DDY+ KPF+ + L+ R+RAI++R  GH
Sbjct: 64  LEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQRVYGH 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
                    L V+  A  V +    + L+ KEY ++  L   K   L++E  L  ++   
Sbjct: 124 QLEGYEKEGLKVDYQAHKVMLNNCVLSLSPKEYDLLVYLIKNKGIALSREQLLRQVWGMD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + + +D  I  LRK L + A    +I T+ G GY   E 
Sbjct: 184 FFGDDRTLDTHIKLLRKNLQDFA---KHIVTIRGVGYRYDEE 222


>gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii
           SDF]
 gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii]
          Length = 220

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD++ A SI+  L+ + + V   + G+  +   + Y++D I+LD GL  + G 
Sbjct: 1   MRILLAEDDRSQAESIQSWLELDGYQVDWVERGDYALTAIEQYDYDCILLDPGLPQLAGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  +R  + + PV  ++   SI D+V GL  GA+DY+ KPF+ EEL ARIR  +R+  
Sbjct: 61  KVLTTIRHKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQLRKQT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              QS++  GDL ++  AK V   G  I LT KE+Q++  L +     +T++     LY 
Sbjct: 121 LSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +E E   I+VFI +LRKK+ +++     I+T+ G GY +
Sbjct: 181 WGEEIESNAIEVFIYQLRKKIGSSS-----IKTIRGLGYRM 216


>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED+  +A  +   L+   +   V   G  G+ L + + FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R +    P+ +L+ + S  DK+ G  +GADDY+ KPF+  EL ARI+ +++R  G+
Sbjct: 64  TKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVSGN 123

Query: 123 AQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +V  DL ++L  K VE     I L+ KEY ++  +       L++      ++
Sbjct: 124 VPELPQELVYADLRIDLQRKDVERNNVSIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+         I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRNF-EPKLIHTKAGMGFILTD 226


>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
 gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
           [Actinosynnema mirum DSM 43827]
          Length = 244

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/227 (30%), Positives = 124/227 (54%), Gaps = 3/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED + +   IE+ L    F+V     G+  +EL + ++ + ++LDL +    G E
Sbjct: 19  KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    +  V +L+  +   DK+ GL +GADDY++KPF+  ELVAR+  ++RR R 
Sbjct: 79  VCRRLRQFS-TAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPRI 137

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A   S  V G + V+LDA++VEV G+ +  T  E++++  ++       T++      +
Sbjct: 138 PAARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRAW 197

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   +DV +  LR+KL  A   +++I TV G GY + +  +
Sbjct: 198 GEEWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGYRVNQEVR 244


>gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
 gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family
           [Arthrospira maxima CS-328]
          Length = 254

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 9/243 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V +   G  G  L      D IILDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDGFT 62

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  +     PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T+     
Sbjct: 123 DRIPQAAKHSEILSYGVLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVAPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD--ETCEY 232
           L  ++    + +++ I V I  LR K+        YI+TV+G GY L   A +   + E 
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLELPAGNGKNSSEV 242

Query: 233 LET 235
            ET
Sbjct: 243 GET 245


>gi|85711499|ref|ZP_01042557.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145]
 gi|85694651|gb|EAQ32591.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLI+DD  ++  +  + K E   + V D G  G++     +F+ I+LD+ L  I G ++
Sbjct: 5   VLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGIDGMQL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     T V +L+     +D+V GL+ GADDY+ KPFN  EL+AR+RA++RR+   
Sbjct: 65  LQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRRTANT 124

Query: 123 --AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++     +++     V      + +T  E+ ++  L  +    ++K+        
Sbjct: 125 MMQNEVLTVSGFTLDPSKAEVTCDRQPLVMTPTEFDILRCLMQQAGQMVSKDQLSVAALG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +  P  + +DV I  +RKKL         I+TV GRGY L 
Sbjct: 185 RKMGPFDRSLDVHISNIRKKL---PANPERIQTVRGRGYRLV 223


>gi|302134399|ref|ZP_07260389.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331016767|gb|EGH96823.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 245

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD  LA      L++   +V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDLRLAELTSDYLQNNGLSVSIEGNGALAAARIIDEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 67  ICRTVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 54/225 (24%), Positives = 112/225 (49%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIPG 59
           ++L++ED++ +  ++      + + V   + G+ G++L   + +    +ILD+ L  + G
Sbjct: 7   KVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDG 66

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + V R +R    + P+ +L+  S  +D + G + GADDY++KPF    L+AR + + + +
Sbjct: 67  WSVCRRIR-KNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDT 125

Query: 120 RGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
               Q    I    + ++  A++V + G +I  T  EY+++  L   K   L++E  + +
Sbjct: 126 NQQVQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITN 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + + K +   +  +R KL   A    +I TV   GY   
Sbjct: 186 IWGYDYDGDDKTLTAHMRNVRLKLGEKA---KHIITVVRTGYKFE 227


>gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
 gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621]
 gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196]
 gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18]
 gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048]
          Length = 216

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLEI-----PYIKTVKGIGYKIE 215


>gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7]
 gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7]
          Length = 219

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 121/220 (55%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +A  +   L+ E ++V  +   +  ++     E + +ILDLGL D  G 
Sbjct: 1   MHLLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGS 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ ++  K   PV IL+  SSIEDKV+GL  GA+DY++KPF   EL AR+R   RR  
Sbjct: 61  QILKHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRVN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               SL+  G+++++  A +V +    + L  KEY +++ L   +    +K+   N LY 
Sbjct: 121 QAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLYQ 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             +E     I+V I  LRKK  +      +I+T+ G GYV
Sbjct: 181 WGEEVGSNTIEVHIHHLRKKFPSD-----FIKTLRGIGYV 215


>gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae
           EF01-2]
 gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family
           [Verminephrobacter eiseniae EF01-2]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE-LCKFYEFDAIILDLGLTDIPG 59
           MRIL++EDD+ LA  +   L++    V     G +    L    EFD +ILDLGL  + G
Sbjct: 1   MRILIVEDDQVLADGLLRTLRASGAVVDHVASGSEADAALLTNNEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR   ++ PV IL+   S++++V+GL  GADDY++KPF+ +EL AR+RA+ RR 
Sbjct: 61  LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + G  I L+ +E  ++ +L  R    ++KE  +  L 
Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E     I+V+I +LRKK+    GG   I TV G GY L +
Sbjct: 181 EWSEEVSNNAIEVYIHRLRKKIE---GGPIRIATVRGLGYCLEK 221


>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 234

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  L   ++  L+ E F+  V   GE G E      +D I+LD+ +  + G +
Sbjct: 10  KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMNGID 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LRA+R  K +TPV +L+      D++ GL+ GADDY+ KP    E+VAR+RAI+RR++ 
Sbjct: 70  ALRAIRAEK-NTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQP 128

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    I  G L++  + +  E  G+ + LT  E+ ++E+L       ++K       
Sbjct: 129 SDNAQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDLSLQG 188

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                    + IDV +  +R+K+   A G++YI+TV+  GY L 
Sbjct: 189 LGRPLARFDRSIDVHLSSIRQKIDAYANGRHYIQTVYRMGYQLV 232


>gi|296394075|ref|YP_003658959.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181222|gb|ADG98128.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 241

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 126/225 (56%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D++ALA  + + L+ E +   V   G   I+L +    D ++LD+ L D+ G E
Sbjct: 17  RVLVVDDEQALAELVSMALRREGWEPAVAFDGAGAIKLARDAAPDVVVLDVMLPDMSGLE 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR    + P+ +L+   ++ED++ GL +G DDY++KPF+ EEL+ R+RA++RR+  
Sbjct: 77  VLLRLREMYPALPLLLLTAKDAVEDRIAGLTAGGDDYVTKPFSLEELMLRVRALLRRAGM 136

Query: 122 HAQS---LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +     IV GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ +
Sbjct: 137 AGEDSDARIVVGDLVLDEDSHEVSRGGDPIVLTATEFELLRFMMRNAKRVLSKNQILDRV 196

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +         I+++++  LRKK+      +  I T+ G GYVL+ 
Sbjct: 197 WSYDFGGRSNIVELYVSYLRKKI--DTEREPMIHTLRGVGYVLKP 239


>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
 gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/227 (33%), Positives = 117/227 (51%), Gaps = 7/227 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLI+DD  L   ++ +L  E + V   + GE G+ L    E D ++LD+ +  + G E 
Sbjct: 4   ILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGL-LAINSEIDLVLLDVMMPKLNGMET 62

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+   
Sbjct: 63  LKRLRE-NWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSST 121

Query: 123 AQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            ++      I   ++ +    +    +   + LT  E+ ++          LTKE     
Sbjct: 122 QKNTKNSDCIEYREIKLYPGKQEAYCEEALLDLTTTEFALLTHFVQNPGQVLTKETLSLD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +   R     + ID+ +  LRKKL + + GK  I+T+ GRGY+L E 
Sbjct: 182 VLGKRLAAFDRAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYMLIEE 228


>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYKWK 221


>gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family
           [Dethiobacter alkaliphilus AHT 1]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ L   ++ +L+   +NV   + G   +EL      D II D+ + ++ G+ +
Sbjct: 4   ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHVDLIICDIMMPNMDGYAL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR A  + PV +++   + +DK +G   G DDY+ KP + +E+V R+ A++RRSR  
Sbjct: 64  TDTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRRSRII 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +  G++ +N D  TV    +   L  KE+ ++  L        T++  ++ ++   
Sbjct: 124 NERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQQLMDEIWGMD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E + + +DV I +LR+K ++    +  I TV G GY 
Sbjct: 184 AEADERTVDVHIKRLREKFADFPEFE--IVTVRGLGYK 219


>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 243

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD  + + +   L            G    +      FD ++LDL L    G  
Sbjct: 7   RILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLMLPGEDGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R+LR      PV +L+      D+V GL+ GADDY++KPF   ELVARI++I+RR+R 
Sbjct: 67  LCRSLRGES-DIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRRARH 125

Query: 122 HAQSL-IVTGDLSVNLDAKTVEV--------QGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +     + D++V  +   +          +G  + L+  E++++ +   R N  LT++
Sbjct: 126 EREPESPESSDIAVEFEGWRLHRVLRQLTSPEGMVVPLSNAEFRLLSVFIERPNRILTRD 185

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             L++      E   + ID+ + +LR+KL +       I+T+ G GY  
Sbjct: 186 QLLDYARGRAMEVFDRSIDLLVSRLRQKLQDDPKNPKLIKTIRGEGYFF 234


>gi|315178867|gb|ADT85781.1| transcriptional regulator CpxR [Vibrio furnissii NCTC 11218]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 118/224 (52%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L   ++ +L  E F V   + GE G+        D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV-NDSVDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR  K  TP  +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR+  
Sbjct: 62  TLKKLRE-KWQTPALMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTGN 120

Query: 122 HAQS----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           H QS    +I   DL +    +    QG  + LT  E+ ++         TLTKEM    
Sbjct: 121 HTQSKPTDMIECQDLQLYPGKQEAYCQGQLLDLTTTEFALLTHFVQNPGETLTKEMLSLD 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   R     + ID+ +  LRKKL   + GK  I+T+ GRGY++
Sbjct: 181 VLGKRLAAFDRAIDMHVSNLRKKLPERSDGKPRIKTLRGRGYLM 224


>gi|315497608|ref|YP_004086412.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
 gi|315415620|gb|ADU12261.1| two component transcriptional regulator, winged helix family
           [Asticcacaulis excentricus CB 48]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 123/220 (55%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIED+   A  +   L  E + V        G+      +   IILD  L +  G  V
Sbjct: 6   ILLIEDEPEGAAIVGEALTREGYEVVWRATASAGLSEAGLGQHHLIILDRMLGNTDGLNV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L  LR A I+TP+ +LS ++  E+++ GL SGADDY+ KPF  +EL+AR+RA++RRS+  
Sbjct: 66  LTTLREAGITTPILVLSALARSENRIDGLDSGADDYLGKPFEPKELLARVRALIRRSQNR 125

Query: 123 AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             S I + GDL +++ ++T    G  + L+ KE+++++LL       +T++M L  ++  
Sbjct: 126 MHSAILIYGDLELHVKSRTAHRAGRHLALSPKEFEILKLLMEHAGDVVTRDMLLQKVWRL 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +P+  +IDV + +LR +L +        ETV G G+ L
Sbjct: 186 NFDPQTNVIDVNMSRLRNRLEDGFEQPVL-ETVRGIGFRL 224


>gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +++D  + +LR K+ +       I TV G GY L   A
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDAPA 225


>gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 5/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+IEDD  L   + L ++SE +         +         +  I+LDLGL D    
Sbjct: 1   MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDRL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L  +R  K++ PV IL+   ++ED++ GL +GADDY+ KPF  EEL ARIRA++RR  
Sbjct: 61  HFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + I  G+L +N+  + V +    + LT KEY ++  L ++  + + +E+  N +Y 
Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +EP    ++V I  LR+K+     GK+ I TV G GY+L  N   E
Sbjct: 181 WDNEPATNTLEVHIHNLREKI-----GKSRIRTVRGFGYMLANNIDTE 223


>gi|257485933|ref|ZP_05639974.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331010343|gb|EGH90399.1| DNA-binding response regulator RstA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 245

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 6/232 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L++EDD+ LA      L +    V +   G          + D +ILDL L    GF 
Sbjct: 7   HVLIVEDDQRLAELTSDYLHNNGLRVSIEGNGALATARIIAEQPDLVILDLMLPGEDGFS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R++R  +   P+ +L+  +   D ++GL +GADD++ KP +   L+ARI A++RRS  
Sbjct: 67  ICRSVR-DRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEA 125

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +V G L V+   +   ++   I LTG E+ ++ LL      TL++E    
Sbjct: 126 PQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFT 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            L     + + + IDV I ++R K+ +       I+TV  +GY+    A  +
Sbjct: 186 ALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQD 237


>gi|291302971|ref|YP_003514249.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572191|gb|ADD45156.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 234

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 112/223 (50%), Gaps = 11/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A S+   L+SE   V +   G   +     +  D I+LD+ L    G E
Sbjct: 12  RILVVEDEPTIAASVAARLRSEGHRVEIAADGPAAVAADAAFLPDLIVLDVMLPGFDGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           V R +  A+   PV IL+      D + GL  GADDY++KPF+  EL AR+ A++RR   
Sbjct: 72  VCRRV-QARRPVPVLILTARDDETDMLVGLGVGADDYLTKPFSMRELTARVSALLRRVDR 130

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +   A+ ++  GDL V+  A+ V      +HLT  E+ ++  L+      L++E  L 
Sbjct: 131 LSAPPPAEPVLRFGDLRVDRAARLVHRGDEEVHLTATEFDLLVYLTEHPQAVLSREQLLA 190

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            ++   D    + +D  +  LR+KL     G   I TV G GY
Sbjct: 191 QVWKWADGGGTRTVDSHVKALRRKL-----GAEVIRTVHGVGY 228


>gi|188583239|ref|YP_001926684.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179346737|gb|ACB82149.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 240

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 7/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ ++  +   L++    V +   G +   +      D I+LDL L    G  +
Sbjct: 10  ILVVEDDREISALVARYLRANECRVSLAGDGREMDRVLADARVDLIVLDLMLPGEDGLSL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR +    P+ +L+  S   D++ GL+ GADDY+ KPFN  EL+ARIRAI+RR    
Sbjct: 70  CRRLRASS-QVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRKGAE 128

Query: 123 AQS-----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            Q             ++++  + V   +G RI +TG E+ ++  L LR    L+++  L+
Sbjct: 129 PQDGDGARRFHFSGWTLDVGLRQVLSPEGARIAVTGAEFDLLHALCLRPGRVLSRDQLLD 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                   P  + IDV + ++R+K+         I T+   GY+    
Sbjct: 189 LTQGRAAGPFERSIDVLVSRIRQKIERDPRNPEIIRTIRSGGYLFAPE 236


>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
           [Deinococcus maricopensis DSM 21211]
 gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
           [Deinococcus maricopensis DSM 21211]
          Length = 249

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 120/223 (53%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   + L L+ E F+V     G +G+     +  D ++LD+ L    GF 
Sbjct: 31  RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR  + + PV +L+   S++D++ GL+SGADDY++KPF   ELVARIR ++RR+R 
Sbjct: 91  FLRDLRA-RDAVPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRRARP 149

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++   DL +N  ++     G R+ +    + ++  L+      L K + L+ ++  
Sbjct: 150 DTLGIVRYADLELNETSREARRGGQRLDMRPTTFDLLVFLARHPERVLPKSVILDAVWGP 209

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      ++++++   R+ L    G    + T+ G GY+L+E 
Sbjct: 210 QFLGSDNVVELYVGYARRAL----GTPPLLHTLRGAGYMLKEQ 248


>gi|238757995|ref|ZP_04619176.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
 gi|238703749|gb|EEP96285.1| KDP operon transcriptional regulatory protein kdpE [Yersinia
           aldovae ATCC 35236]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE + V+ +D  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRIALESEGWRVFESDTLQRGLIEAGTRKPDLIILDLGLPDGDGLTY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           ++ LR    + P+ +LS  +S EDKV  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IQDLRQWS-AIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHSGG 126

Query: 123 A--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           +     +   D+SV+L  + V      +HLT  E++++  L       +T+   L+ ++ 
Sbjct: 127 SLESPRVDFSDISVDLINRQVTRADVDLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLETDPTRPKHLLTETGVGYRF 227


>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
 gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
 gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
          Length = 223

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
           + + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 QTDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYKWK 221


>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +   +   L +  + V     G++ +E      +D I+LDL L  + G 
Sbjct: 1   MRLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 61  ELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G++  +   +    +   + LT KE  ++E L +     +++E  + H++D
Sbjct: 121 VQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LRKKL    G  + I+   G GY +RE +
Sbjct: 181 ATADSFSGAIRVHMSSLRKKLKAKLGY-DPIQNKVGEGYKIREES 224


>gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
 gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810]
 gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
 gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
 gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
 gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
          Length = 218

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +      I+V I  LRKK          I+ + G GY+L +
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APNVAIKNIRGVGYILEK 218


>gi|254555419|ref|YP_003061836.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308179421|ref|YP_003923549.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|254044346|gb|ACT61139.1| response regulator [Lactobacillus plantarum JDM1]
 gi|308044912|gb|ADN97455.1| response regulator [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 234

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTD 56
           M+  IL++ED+ +L+  +   L+ E+FNV V   G   +E       E   I+LD  L  
Sbjct: 1   MKNTILIVEDEGSLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I 
Sbjct: 61  LDGMEVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQ 119

Query: 117 RRSRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR     +   V    D+ ++  A  V      + LT +EY +++      +   T++  
Sbjct: 120 RRIENQVEPNQVYQLDDIQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++      +  ++DV++  LR K++        I+TV G GY LRE   D
Sbjct: 180 LDQVWGADFLGQQNVVDVYVGYLRNKITTTGASP-LIQTVRGVGYKLREPMSD 231


>gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L++E + V     G   +E  +    +  I D+ +  + G E+
Sbjct: 4   IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDIKMPRMDGMEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  K   PV  L+      D++ GL+ GADDYI KPF++  LV R+RAI+RR    
Sbjct: 64  LRRLRQ-KSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRRGAPR 122

Query: 123 ---------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                     +S +  G L ++ +  T    GH + LT  E+ ++  L+ R     +++ 
Sbjct: 123 EAAKPGGPVPESSLERGQLVMDQERHTCTWTGHPVTLTVTEFLILHSLAQRPGVVKSRDA 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  YD +   + + ID  I +LRKK        + IET++G GY  RE
Sbjct: 183 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRFRE 232


>gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
 gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia
           solanacearum CFBP2957]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  I G 
Sbjct: 7   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGISGL 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 67  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 126

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 127 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 187 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 228


>gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator
           [Stackebrandtia nassauensis DSM 44728]
 gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family
           [Stackebrandtia nassauensis DSM 44728]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/224 (35%), Positives = 135/224 (60%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ +A+++   LK++ F V V   GE G+E  +F  +DAIILD+ L  + G+
Sbjct: 1   MRLLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR      PV +LS      D+  GL  GADDY++KPF+   L+AR+RA++RR  
Sbjct: 61  EVIRTLRRENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               S++  GDL+++    TV  +   I L+ +E+ ++E L       +TK   L+H++ 
Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  V +++V+I  LRKK+ +   G++ ++TV G GY L  +
Sbjct: 181 ASEDTHVNLVEVYIGYLRKKI-DTPFGRSSLQTVRGAGYRLTAD 223


>gi|146299380|ref|YP_001193971.1| two component transcriptional regulator [Flavobacterium johnsoniae
           UW101]
 gi|146153798|gb|ABQ04652.1| two component transcriptional regulator, winged helix family
           [Flavobacterium johnsoniae UW101]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L++ED+K LA  +   L    +   + +   D +E     ++DA++LDLGL D  GF
Sbjct: 5   MNVLIVEDNKELAVEVYDFLSKAGYICKIANNCADALEEFGSNDYDAMLLDLGLPDGDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R  K    V +L+    ++D++ GL  GADDY++KPF   EL AR+ A++RR  
Sbjct: 65  EVLQTIRKTKSKIAVIVLTARGELDDRINGLHLGADDYLTKPFALTELAARLFAVIRRIH 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +      + L    V      + LT KE+ + + L L KN  +T+     H++ 
Sbjct: 125 GFTLNNLSIHGFLLQLQDYKVSFNEVPLSLTKKEFDIFQYLVLNKNRVITRLQLTEHIWG 184

Query: 181 G--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                  +   IDV +  LRKKL       ++ ETV   GY + E
Sbjct: 185 DILEINSDSNFIDVHVRNLRKKLDKHTSI-DWFETVRNVGYRINE 228


>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 4/218 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGY 219
              E + +D  I  LR KL        ++++TV+G GY
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGY 218


>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
 gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
           protein [Marinobacter sp. ELB17]
          Length = 228

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 114/222 (51%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIEDD  L   +   L ++ F V     G+DG+ L +    D ++LD+ L DI G +
Sbjct: 4   RVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGLD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLR LRV     PV +L+      D++ G + GADDYISKP N  ELVAR+ A++RR   
Sbjct: 64  VLRQLRV-SAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +         GDL +  D + V   G  + LT  EY+++++L     + + K   +  
Sbjct: 123 DQKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQW 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
               R E   + +D+ I  LRKKL N       IETV G GY
Sbjct: 183 ALGRRLETYDRTLDMHISNLRKKLGNE--EPPRIETVRGLGY 222


>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 238

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ +   +   L  E + V   + G     L      D ++LDL L    G  +
Sbjct: 6   LLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLMLPGEDGLSI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+  +   D++ GL+ GADDY+ KPFN  EL+ARIRA++RR+ G 
Sbjct: 66  CRRLRARSG-LPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLRRADGA 124

Query: 123 AQSLIV------TGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                             +LDA++V   +G  + LT  E++++     R    L+++  L
Sbjct: 125 MPQPQFQSRRVAFAGFVADLDARSVGCAEGEALDLTSAEFELLACFLERPKRVLSRDQLL 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLRENAK 226
           +       +P  + IDV + +LR+KL + A      I+TV   GY+   + +
Sbjct: 185 DWTRGRSADPFDRTIDVSVSRLRRKLVAAAPEAALLIKTVRNGGYLFAADVR 236


>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/220 (32%), Positives = 117/220 (53%), Gaps = 4/220 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED++ +   +   LK   F+VY    G +G+E+    ++D II+D  L    G E
Sbjct: 4   KILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQYDVIIVDWMLPYHDGIE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           ++   R   +   + +L+      D +    +G DDY+SKPF+  EL ARI A +RR   
Sbjct: 64  LVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRRVDM 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            H    I  GD+ +NLD  TV V  + + LT KE+ ++  L   +N  LT++  L+ ++ 
Sbjct: 124 NHELRRIEVGDIVINLDQHTVVVGSNPVELTKKEFDLLIYLLQNENIVLTRDQILSEIWH 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
              + + +I+DV I KLR KL ++      I ++ G GYV
Sbjct: 184 FDYDGDTRIVDVHIFKLRTKLEDSNVK---INSLRGVGYV 220


>gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
 gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum
           variabile DSM 15176]
          Length = 230

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD ++    +  L++  +     + G       +    D +ILD+ L D  G+++
Sbjct: 2   IYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQI 61

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR      + PV +++  +S  D V+GL  GADDY+ KPF   E ++R++A++RR++
Sbjct: 62  LNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLRRAQ 121

Query: 121 GHAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             A       +  G + ++  A+TV V G  + LT KEY ++ L        L +E  + 
Sbjct: 122 AAAPAPAPKTLTFGAIVMDDVARTVRVDGAPVELTFKEYALLHLFLEHPEQVLARERIMK 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
            ++D  D  E + ID+ +  LR+KL  A      I TV   GY L     DE
Sbjct: 182 EVWDTDDLLESRTIDMHVRTLRQKLGAAGES---IRTVRKVGYKLSTEGADE 230


>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++   +   + VY    G+D ++       D I+LD+ + +I G E
Sbjct: 4   KILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R   +S P+  L+      DK+ G ++GADDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCNRIR-DYVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    +    DL+++ + + + +  ++I L+ KE+ ++ELLS+       KE   + ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    +I   I K+R KLS      NYIETVWG GY  
Sbjct: 182 GYNSNGNSDVIMEHIRKIRIKLSKHTLE-NYIETVWGVGYKW 222


>gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
 gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum SS9]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L+H ++  L      V      E+G+   + Y  D  ++D+GL D  G 
Sbjct: 6   MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  PV IL+  ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 66  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 125

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 126 GFVKPEMSAGDIRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E +   I+V I +LRKK   +AG  N I T+ G+GY+    A+
Sbjct: 186 -DQEGDPNTIEVMISRLRKKF-MSAGQDNPISTIRGQGYIFELQAQ 229


>gi|116332987|ref|YP_794514.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
 gi|116098334|gb|ABJ63483.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus brevis ATCC 367]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 79/238 (33%), Positives = 123/238 (51%), Gaps = 11/238 (4%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF--YEFDAIILDLGLTD 56
           M+  ILL+ED++ LA  +   L  E+F+V     G    E+ +        ++LD  L  
Sbjct: 1   MKNTILLVEDEEGLASYVAKELTFEDFDVLTATDGAAAWEIYQQKKDRLLLVLLDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR +R      PV +++    + DKV GL +GADDYI+KPF  EEL+ARIR I 
Sbjct: 61  MDGMEVLRRIR-KHDELPVIMMTARDYLGDKVTGLDNGADDYITKPFEIEELLARIRVIQ 119

Query: 117 RRSRGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR+   +        GDL++    + V+  G  I LT +EY ++  L        T++  
Sbjct: 120 RRTAHQSGLDQTYHLGDLTLVTKTRQVDRAGDTIQLTQREYDLLLFLMQHPGQVFTRDEL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L++++      +  ++DV+I  LR K+ + A   +   TV G GY L+E   DE  E+
Sbjct: 180 LDNVWGVDFLGQQNVVDVYIGYLRNKI-DVAAAPHLFHTVRGVGYSLKE---DEAHEH 233


>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
 gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
          Length = 224

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ +   ++   +   + VY    G+D ++       D I+LD+ + +I G E
Sbjct: 4   KILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEIDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R   IS P+  L+      DK+ G ++GADDYI KPF+ +EL AR+ A +RR + 
Sbjct: 63  VCNRIR-DYISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRREQR 121

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +    +    DL+++ + + + +  ++I L+ KE+ ++ELLS+       KE   + ++
Sbjct: 122 KSNQTKIKFYNDLTIDYEKRLICIYNNQISLSKKEFDIVELLSMNPGQVFDKEKIYDRVW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    +I   I K+R KLS      NYIETVWG GY  
Sbjct: 182 GYNSNGNSDVIMEHIRKIRIKLSKHTLE-NYIETVWGVGYKW 222


>gi|53725411|ref|YP_103471.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121601439|ref|YP_992428.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124384159|ref|YP_001026769.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126451092|ref|YP_001079946.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|126455264|ref|YP_001065533.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|134283888|ref|ZP_01770584.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|226195325|ref|ZP_03790914.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811540|ref|YP_002895991.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238562097|ref|ZP_04609887.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242317232|ref|ZP_04816248.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|251767304|ref|ZP_02266740.2| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254181223|ref|ZP_04887820.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|254195197|ref|ZP_04901626.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|254260507|ref|ZP_04951561.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
 gi|254359896|ref|ZP_04976166.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|52428834|gb|AAU49427.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           23344]
 gi|121230249|gb|ABM52767.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
 gi|124292179|gb|ABN01448.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10229]
 gi|126228906|gb|ABN92446.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106a]
 gi|126243962|gb|ABO07055.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
           10247]
 gi|134244677|gb|EBA44775.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 305]
 gi|148029136|gb|EDK87041.1| DNA-binding response regulator KdpE [Burkholderia mallei
           2002721280]
 gi|169651945|gb|EDS84638.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei S13]
 gi|184211761|gb|EDU08804.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1655]
 gi|225932527|gb|EEH28525.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503786|gb|ACQ96104.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei MSHR346]
 gi|238523332|gb|EEP86771.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           mallei GB8 horse 4]
 gi|242140471|gb|EES26873.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1106b]
 gi|243063242|gb|EES45428.1| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
 gi|254219196|gb|EET08580.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 1710a]
          Length = 234

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 10  VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 70  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQA 128

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 129 GAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 188

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 189 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 231


>gi|317049050|ref|YP_004116698.1| winged helix family two component transcriptional regulator
           [Pantoea sp. At-9b]
 gi|316950667|gb|ADU70142.1| two component transcriptional regulator, winged helix family
           [Pantoea sp. At-9b]
          Length = 226

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G  G+E      + A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSQYLIAEGFDAQLVLTGSAGVEGALSGNYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      PV +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVRQ-NSRLPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFE 119

Query: 121 GHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             A       ++  GDLS+N   +  E QG    LT  E+ +++LL    +  ++K+   
Sbjct: 120 DQAPLPDKKEVLRWGDLSLNPATRITEWQGKAFDLTASEFNLLDLLMRAPDRVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   E   + +DV I  +R+KL+        IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSVDVHISNIRQKLAALTADSVNIETVRSIGYRIR 226


>gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
 gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB
           [Fusobacterium sp. 3_1_36A2]
 gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27]
          Length = 227

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N+ V     GE GIE+     +D ++LDL L    G E
Sbjct: 6   KILIIEDDKNIQRLLALELRHKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R    
Sbjct: 66  VCQELRKL-ADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 124

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 125 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 185 YDFDGEEKIVDVYINSLRKKID---SKSKYIHTIRGFGYIFQ 223


>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 9/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  L  + +L L+   ++V     G  G E  +       +LD+ L ++ G E
Sbjct: 6   RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV +LS  +   D V+GL++GADDY+ KPF+   LVARIR++VRR R 
Sbjct: 66  LCRRIRGCS-HVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 124

Query: 122 H---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A ++   GDL V+LD+  V   G  + LT  E +++   + +    LT+   L  +
Sbjct: 125 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 184

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +D     + +++DV + +LR K+     G+  +ETV G GY L  
Sbjct: 185 WDYAWGGDTRVVDVHVQRLRAKI-----GRERVETVRGFGYKLVP 224


>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/228 (25%), Positives = 113/228 (49%), Gaps = 10/228 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  L   ++    SE + V+    G++ + + +  E D +ILD+ L ++ G+ V
Sbjct: 5   ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELDGWSV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV------ 116
            R +R      P+ +L+     +D + G + GADDY++KP++   L+AR + ++      
Sbjct: 65  CRRIRKTS-EVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           ++   +   ++    + V+  ++TV V    I+LT  E++++      +   LT+E  ++
Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQLIS 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      + + ++  I  LR KL   A    YI TV   GY    N
Sbjct: 184 RIWGYEFAGDDRTVNSHIRNLRNKLGEKA---KYITTVVRTGYKFEGN 228


>gi|261343520|ref|ZP_05971165.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rustigianii DSM 4541]
 gi|282568669|gb|EFB74204.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rustigianii DSM 4541]
          Length = 227

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +   + L L+ E + V+  +  + G+      + D +ILDLGL D  G +
Sbjct: 5   QILIIEDEKEIRRFVRLALEGEGWKVFEAENCQRGLIEAGTRQPDLVILDLGLPDGDGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++R LR    S P+ +LS       KV  L +GADDY++KPF   EL+AR+R  +RR   
Sbjct: 65  LIRDLRKWS-SIPLIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRRFGK 123

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G        GD++V+   + V      +HLT  E++++  +       LT+   L  ++
Sbjct: 124 AGQENPTFQFGDVTVDFINRVVTKGEEELHLTPIEFRLLSEMVANSGKVLTQRHLLLQVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL        ++ T  G GY  
Sbjct: 184 GPSYVEHNHYLRIYMGHLRQKLETDPARPVHLLTETGVGYRF 225


>gi|157369487|ref|YP_001477476.1| DNA-binding transcriptional activator KdpE [Serratia proteamaculans
           568]
 gi|157321251|gb|ABV40348.1| two component transcriptional regulator, winged helix family
           [Serratia proteamaculans 568]
          Length = 229

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   +   L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRTALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           +R LR    + PV +LS  ++ EDK+  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGS 126

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   +++V+L  + V  QG  +HLT  E++++  L       LT+   L+H++ 
Sbjct: 127 LQESPLVSFSEITVDLINRRVLRQGEDLHLTPIEFRLLAELLANSGKVLTQRQLLSHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEADPARPKHLLTETGVGYRF 227


>gi|154246784|ref|YP_001417742.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160869|gb|ABS68085.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 232

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/230 (28%), Positives = 118/230 (51%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L++E + +     G   ++  K    D  ILD+ +  + G E+
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR LR  K   PV  L+      D++ GL+ GADD+I KPF++  LV R++A++RR    
Sbjct: 64  LRRLRQ-KTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAK 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    +  ++  G+L ++ +  T   +G  + LT  E+ +++ L+ R     ++  
Sbjct: 123 DGAAPRETDSAKVLERGNLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNA 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  YD +   + + ID  I +LRKK  +       IET++G GY  +E
Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKSVDDSFEMIETLYGVGYRFKE 232


>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/220 (27%), Positives = 109/220 (49%), Gaps = 4/220 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVL 221
              E + +D  I  LR KL        ++++TV+G GY  
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKVNFPIDHHLKTVYGVGYRW 220


>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
 gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
           [Haliangium ochraceum DSM 14365]
          Length = 235

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 115/224 (51%), Gaps = 2/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+  +   +   L+ E F V     G +G++    +  D ++LDL L D  G+ 
Sbjct: 12  KILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGYR 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   LR      P+ IL+  S   DKVRGL++GADDY++KPF+  EL+ARI AI RR   
Sbjct: 72  VCETLRSRDPVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRRQVR 131

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  +     G   +N    T+        LT  E ++++LL  R  + +T++  L  ++
Sbjct: 132 LASHEEAFDIGPWRINTRKHTMNQGRSTKRLTFYELEVLKLLRERAESPVTRDEILEKIW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                P  + +D FI KLR+KL        +I TV+G GY L  
Sbjct: 192 GVTPSPANRTVDNFIVKLRRKLEEDHKRPRHILTVYGHGYKLVP 235


>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 233

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 7/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD ++ + I   LK+  +       G+  I     Y  D ++LDLGL D+ G E+
Sbjct: 6   ILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGLPDMDGVEI 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           +R +R    + P+ ++S  S   DK+  L +GADDY++KPF+ EEL+AR+R   RR    
Sbjct: 66  IRKIRSWS-NMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLRVTQRRLAIM 124

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S    G L ++  A    + G  +HLT  EY+++ LLS      LT      
Sbjct: 125 QGGTQEEKSTFTNGKLMLDYGAGCAYMDGKELHLTPIEYKLLCLLSKHVGKVLTHTYITQ 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++    E +V  + V++  LRKK+ +      YI+T  G GY +
Sbjct: 185 EIWGRSWENDVASLRVYMATLRKKIESEPDMPQYIQTHIGVGYRM 229


>gi|226312596|ref|YP_002772490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226095544|dbj|BAH43986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 225

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 124/226 (54%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELML-KSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           MR+LL ED   L   I  ML +    +V     G++   L     +D ++LD  +    G
Sbjct: 1   MRVLLAEDQLLLGKIIAHMLKEKGGHDVKWVTNGQEAYNLIIDSYYDVLVLDWMMPQKDG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
             + + LR    S  + +L+   ++E+++ GL +GADDY+ KPF  +EL+AR+RA+ RR+
Sbjct: 61  VTLCKELREQGYSGAILMLTAKDTLEERIEGLDAGADDYLVKPFESDELLARLRALSRRN 120

Query: 120 RGH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                + +I    + +N   +++   G  I LTGKE+ +++LL   + T LT+++ L+ +
Sbjct: 121 FAPIQEDIIEVNGIRMNRSKQSITRDGEEIQLTGKEFALLDLLVRNQGTVLTRDLILDRI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + G  E     +DV+I  LRKK+ +A   K  I ++ G GYV+ ++
Sbjct: 181 WGGEMEVASNSVDVYITLLRKKI-DAPSQKPLIRSIRGVGYVIEKS 225


>gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
 gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway
           5J108-111]
          Length = 245

 Score =  246 bits (629), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L+   F   +   G +   +      D +ILD+ +    G  
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+ +S   D++ GL+ GADDY+SKPFN  EL+AR+RAI+RRS+G
Sbjct: 66  LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     + + +      S++L  + +       I L+  E+ ++  L  R    L+
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDLAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L+   +    P  + ID+ I +LR KL         I+T+ G GYVL
Sbjct: 185 RDKLLDLTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|167579955|ref|ZP_02372829.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
          Length = 257

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 11  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMSGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEK 230


>gi|71282358|ref|YP_267401.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
 gi|71148098|gb|AAZ28571.1| DNA-binding response regulator [Colwellia psychrerythraea 34H]
          Length = 260

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 24/233 (10%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
           A  I++ L   + N  +   G + ++     ++  I+LD+ L  I G ++ R +R  K  
Sbjct: 15  AKLIKVHLSELDLNCDICTQGNEALQQALTKDYQLILLDVMLPGISGLDICRQVRQEKPL 74

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-------------- 118
             + +L+  +S  D++ GL+ GADDY++KPF+  EL AR+R+ +RR              
Sbjct: 75  QSIIMLTSKTSEIDRILGLELGADDYMTKPFSVRELQARVRSQLRRVHAITAKNASEINS 134

Query: 119 ----------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                     S    ++    G L V+     V  +   I+LT  E+++I+      +  
Sbjct: 135 LVHEEKPVQESAQLDKTSTSIGQLLVDHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQV 194

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++   L+ ++          ++  I +LR KL         I+TVWG GY L
Sbjct: 195 FSRAQLLDGVWGYHHNGYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGYKL 247


>gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656]
 gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
 gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 113/225 (50%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+ +D+K +  +I + L S+ + V     G + +++ K  +   +++D+ +  + G E
Sbjct: 3   KVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIVKHNDVHLVLMDIMMPVMDGIE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            +  +R    + PV +L+  S   DKV GL  GADDY++KPFN  EL AR+++ +RR   
Sbjct: 63  AMVEIRKIS-NVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRRYML 121

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +   +V G + ++  +KTV V G   +LT  EY +++LL        +      
Sbjct: 122 LGAGNTSAGKLVIGGIELDDKSKTVTVDGEAANLTRTEYDILKLLMEHPGEVYSPNQIYA 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++          + V I  LR+K+        Y++ +WGRGY +
Sbjct: 182 KVWKDEPYGTENTVAVHIRHLREKVEINPAEPRYLKVIWGRGYKI 226


>gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a
           HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 203

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 63/200 (31%), Positives = 112/200 (56%), Gaps = 5/200 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+ +   +   L+ E   V     G+D +   +  + D I+LD+ L DI G EV
Sbjct: 4   IYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEKPDLILLDIMLPDIDGLEV 63

Query: 63  LRALRVA--KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + ++    K   P+ +L+  S+  DK+ GL+ GADDYI+KPF+  EL+ARI+A++RR +
Sbjct: 64  CKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVLRRCQ 123

Query: 121 GHAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +     +I  G+L +NL    V++ G  ++LT KE++++  L   K   L+++  L+ 
Sbjct: 124 NKSSKNVDVIKIGELEINLAKFEVKIHGKPLNLTTKEFKLLMNLINSKGRVLSRDYLLDT 183

Query: 178 LYDGRDEPEVKIIDVFICKL 197
           ++    +   + +DV I  L
Sbjct: 184 VWQNEPDVFDRTVDVHIKNL 203


>gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
 gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter lwoffii SH145]
          Length = 223

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S E +LK   F+V+  + G +G++  +   +D ++LDLGL  + G  
Sbjct: 3   KILIIEDDFMIAESTETLLKLHQFDVHWVNNGIEGLKQLQQQVYDIVLLDLGLPMMDGIL 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R    + PV I+S    ++++V GL  GADDY+ KP+  +EL+ARI A++RRS  
Sbjct: 63  VLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRSGL 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                     +  G L ++L+       G  I L+ +E+ ++  +    N   +K    +
Sbjct: 123 KNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDLED 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   +     ++V+I  LR KL     GK++I T+ G GY L
Sbjct: 183 KLYDFDSDVSSNTVEVYIHHLRAKL-----GKDFIRTIRGLGYRL 222


>gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
 gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family
           [Sebaldella termitidis ATCC 33386]
          Length = 230

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 88/231 (38%), Positives = 136/231 (58%), Gaps = 2/231 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  +A ++  +L+  N++V +   GEDG++      +DA+ILD+ L    G 
Sbjct: 1   MKILIVEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ LR +KI  PV +L+  S  EDKV+GL  GADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SVLKLLRESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALTRRKG 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 I+  GD+S+N     +  + ++I+LT KE Q +ELL   KNT ++KE  +  L+
Sbjct: 121 ELIFDGIMKFGDISLNPHLLLLSCRDNKINLTLKESQALELLITNKNTAVSKETIIEKLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
               E E    ++ I  LRKKL  A G    I+ + G GY+++   ++  C
Sbjct: 181 GYDSEAEDNHAEIHISLLRKKLKQA-GSVLLIKAIRGIGYIIKYPEEESAC 230


>gi|52140505|ref|YP_086323.1| response regulator [Bacillus cereus E33L]
 gi|51973974|gb|AAU15524.1| response regulator [Bacillus cereus E33L]
          Length = 229

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 6/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   IE  L  E + V     GE+ ++       D IILD+ L D+ GF+
Sbjct: 4   KILVVDDEPDILTFIEDSLVMEGYEVRSALNGEEALKQLDS-SVDLIILDVMLPDMNGFK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R +    P+  LS   S   ++ GL  G DDYISKPF+ +EL ARI A +RR+  
Sbjct: 63  VCEKMRESYP-CPILFLSADGSERSRIEGLLIGGDDYISKPFSLKELKARIIANLRRTTE 121

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 ++L+  GDL ++L +  + +   +IH T KEY+++++L+L     LTKE     
Sbjct: 122 LQMMGQKNLLRYGDLVIDLQSYEILLGKEKIHFTKKEYEVVKMLALHAGQVLTKEQLFEK 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++    E +V  +   I K+R KLS       YI+TVWG GY  
Sbjct: 182 IWGYDSESDVSTVVEHIKKIRTKLSVYDREYTYIQTVWGIGYKW 225


>gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family
           [Bradyrhizobium sp. BTAi1]
          Length = 246

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+     I   L++ + NV     G +   +   +  D +ILD+ L    G  
Sbjct: 7   HILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 67  LCRKLRAES-QVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S     + +      ++   + +   +G R+ +T  E+ ++     R    L+++ 
Sbjct: 126 AMTASATEGATALSFLGWRIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGRVLSRDS 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+           + IDV + ++R+K+         I+TV   GY+     +
Sbjct: 186 LLDLTQGRSAGSFERSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMFTPVVE 238


>gi|258654798|ref|YP_003203954.1| winged helix family two component transcriptional regulator
           [Nakamurella multipartita DSM 44233]
 gi|258558023|gb|ACV80965.1| two component transcriptional regulator, winged helix family
           [Nakamurella multipartita DSM 44233]
          Length = 252

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +R+L+++D+++L+  + L L+ E + V     G   I   + +  D ++LD+ L DI G 
Sbjct: 27  IRVLVVDDEQSLSELVSLALRYEGWEVRSAPDGLSAIAAARDFRPDLVVLDVMLPDIDGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR      PV  L+    + D++ GL +G DDY++KPF+ EELV R+RA++RRS 
Sbjct: 87  EVLRRLRADIERMPVLFLTAKDDVSDRIAGLTAGGDDYVTKPFSIEELVLRLRALLRRSH 146

Query: 121 G---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S IV GDL ++ D++ V      I LT  E++++  L       ++K   L+ 
Sbjct: 147 LALTTDSSTIVVGDLVLDEDSREVRRGDDLISLTATEFELLRFLMRNPKRVMSKAQILDR 206

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +++     +  I++++I  LRKK+   AG +  I T+ G GYVL+ 
Sbjct: 207 VWNYDFGGQANIVELYISYLRKKI--DAGREPMIHTMRGFGYVLKP 250


>gi|225026830|ref|ZP_03716022.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
 gi|224955837|gb|EEG37046.1| hypothetical protein EUBHAL_01082 [Eubacterium hallii DSM 3353]
          Length = 223

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 6/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD  +     + LK+   +V   D      +  +    D  ILDL L D  G+E+
Sbjct: 4   IYIVEDDTNIQEIEAIALKNSGHSVEQFDDAAHFYKKLEEKLPDLAILDLMLPDEDGYEI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ LR    +   PV +++  +S  D VRGL  GADDYI KPF+  E + R++AI+RR+ 
Sbjct: 64  VKKLRQNPATKKLPVIMVTAKTSEIDMVRGLDIGADDYIKKPFSIIEFITRVKAILRRTL 123

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GD+ ++ +   V V    I LT KEY++++LL       LT+E  +  ++
Sbjct: 124 EQPDDKYMTIGDIFLDNERHVVYVDNKGIELTYKEYELLKLLMHNAGIVLTREKIMERVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           D   E E + +D+ I  LRKKL +++    +I+TV   GYV+ 
Sbjct: 184 DTEFEGESRTVDMHIKTLRKKLGDSS---RHIKTVRNVGYVME 223


>gi|190570997|ref|YP_001975355.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019514|ref|ZP_03335320.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357269|emb|CAQ54693.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212994936|gb|EEB55578.1| two component transcriptional regulator [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|222825037|dbj|BAH22195.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of
           Cadra cautella]
          Length = 256

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 123/233 (52%), Positives = 161/233 (69%), Gaps = 5/233 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLT-D 56
           MRILLIEDD+  A ++   L S+     V    +D            +D +ILD+ L  D
Sbjct: 1   MRILLIEDDQVSARTVVNALTSDGHFCDVVTSAQDYNNNMVSSGGDCYDLVILDIHLPGD 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           I G+++L  LR AKI  PV ILS +S+   K +GL  GADDY++KPF+K EL+ARI+AIV
Sbjct: 61  IDGYDILLRLRSAKIKVPVLILSCISAANHKAKGLGYGADDYLTKPFHKSELLARIKAIV 120

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR++GH +S+I  G++++N D + VEV+G  +HLT KEY MIELL+LRK   LTKEMFLN
Sbjct: 121 RRTKGHPESVIKIGNMNINFDHRIVEVKGKTVHLTNKEYSMIELLALRKGAVLTKEMFLN 180

Query: 177 HLYDGRDEPEVK-IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           HLY+G DEP    I+DVF+CKLRKKL +A  G ++IETVWGRGYVL+E   DE
Sbjct: 181 HLYNGLDEPSDNKIVDVFMCKLRKKLESANDGISHIETVWGRGYVLKEYVDDE 233


>gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia
           PC184]
 gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
          Length = 224

 Score =  245 bits (628), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 5   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 65  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 125 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 185 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 224


>gi|331269514|ref|YP_004396006.1| regulatory protein VanR [Clostridium botulinum BKT015925]
 gi|329126064|gb|AEB76009.1| regulatory protein VanR [Clostridium botulinum BKT015925]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDDK L   ++  L+ E + +  T   E+G +     + D ++LD+ L D  G +
Sbjct: 3   KILIVEDDKLLNKGVKFALEIEGYTILDTYNYEEGYKAFLKDKVDLVLLDINLPDESGSK 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   +R      P+  ++   +  D + G   G DDYISKPF+ E L  RI+A++RR+  
Sbjct: 63  LSMEIR-KNSEIPIIFITAKDTESDIIDGFNLGCDDYISKPFSIEVLKQRIKAVLRRTNL 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              ++ V  D++++ +   V+  G  I LT KEY+++ELL       LT+   L  L+D 
Sbjct: 122 VENTVFVYEDITIDFNKMDVKKDGISIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDT 181

Query: 182 R-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +  +   ++V I +LRKK+ + +    YI TV+  GY   + +
Sbjct: 182 DGNFVDENALNVNIRRLRKKIEDDSKNPKYIITVFSIGYTWGKTS 226


>gi|309812765|ref|ZP_07706504.1| response regulator MprA [Dermacoccus sp. Ellin185]
 gi|308433282|gb|EFP57175.1| response regulator MprA [Dermacoccus sp. Ellin185]
          Length = 209

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/209 (34%), Positives = 123/209 (58%), Gaps = 5/209 (2%)

Query: 18  LMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCI 77
           + L+ E +++     G   ++  K ++ DA++LD+ L D  G EVLR +R    + PV  
Sbjct: 1   MALRYEGWDIKTAATGNSAVKTAKEFKPDAVVLDMMLPDFDGLEVLRRMRDEDPALPVLF 60

Query: 78  LSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ---SLIVTGDLSV 134
           L+   ++ED+V GL +G DDY++KPF+ EE+VAR+RA++RRS   A+   SL+  GDL++
Sbjct: 61  LTARDAVEDRVAGLTAGGDDYVTKPFSLEEVVARVRALLRRSVQLAEEETSLLTVGDLTL 120

Query: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFI 194
           + D+  V   G  I+LT  E++++  L       L+K   L+ ++      +  +++++I
Sbjct: 121 DEDSHEVMRAGTEINLTATEFELLRFLMRNPKRVLSKAQILDRVWHYDFGGQANVVELYI 180

Query: 195 CKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             LRKK+   AG +  I T+ G GYVL+ 
Sbjct: 181 SYLRKKI--DAGREPMIHTMRGAGYVLKP 207


>gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 229

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+K +   + + L+SE   V+ ++  + G+      + D IILDLGL D  G   
Sbjct: 8   ILIVEDEKEIRRFVRIALESEGLRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLSY 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  ++ EDK+  L +GADDY+SKPF   EL+AR+R  +RR  G 
Sbjct: 68  IRDLRQWS-AIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGS 126

Query: 123 AQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            Q   L+   +++V+L  + V   G  +HLT  E++++  L       +T+   L+H++ 
Sbjct: 127 QQESPLVSFSEITVDLINRRVLRNGEDLHLTPIEFRLLAELLANSGKVITQRQLLSHVWG 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + +++  LR+KL        ++ T  G GY  
Sbjct: 187 PNYVEHSHYLRIYMGHLRQKLEADPARPKHLLTETGVGYRF 227


>gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
 gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
           F0264]
          Length = 196

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/195 (40%), Positives = 121/195 (62%), Gaps = 1/195 (0%)

Query: 32  LGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGL 91
            GE+ +E  ++ E+D +ILD+ +  I GFEV++ LR    +T V +L+   S +DKV+GL
Sbjct: 3   DGEEALEYLEYGEYDLVILDVMMPKINGFEVVKELRSKGNNTSVLMLTARDSADDKVKGL 62

Query: 92  QSGADDYISKPFNKEELVARIRAIVRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLT 151
             GADDY+ KPF+  EL ARIRA+VRR  G++ + I   DL ++   K+V   G +I LT
Sbjct: 63  DMGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKKIDLT 122

Query: 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211
           GKEY+++E L   KN  L+++  +  ++    E +  IIDV I  +RKK+ +   GK  I
Sbjct: 123 GKEYEILEYLVQSKNRILSRDQIIERVWGYEYEGDSNIIDVLIKNIRKKI-DIEDGKQII 181

Query: 212 ETVWGRGYVLRENAK 226
            T  G GYV++E+ +
Sbjct: 182 FTKRGMGYVVKEDDE 196


>gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
 gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC
           43380]
          Length = 239

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L  E FN  +   G++GI      ++ A+ILD+ L D+ G 
Sbjct: 13  MKILLVDDDAELGTMLREYLSGEGFNAELVLTGKEGITAALSGDYSALILDIMLPDMSGI 72

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 73  DVLRQVRQ-NSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRRFD 131

Query: 121 GHAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     S I  G+L+++   ++   QG    LT  E+ ++ELL       +TK+  
Sbjct: 132 ERPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKDEL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +       E   + +DV I  +R+KL+     +  IETV   GY +R
Sbjct: 192 SDKGLGRPREAYDRSVDVHISNIRQKLAALPDNRLNIETVRSIGYRIR 239


>gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
 gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus
           erythropolis PR4]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 12/224 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+ ++  SI   L++E ++V +   G   +  C+  + D ++LD+ +    G E
Sbjct: 5   RVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVTRCEQMDADLVVLDVMMPGFDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++  +   PV +L+  +   D + GL  GADDY+SKPF+   LVAR++A++RR+  
Sbjct: 65  VCRRIQAVRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLRRADR 123

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                     L+  GD+ ++L  + V      +HLT  E+ +I  L+ R    + +E  L
Sbjct: 124 AEHAARPVADLLEFGDVVIDLTERRVRRDTQEVHLTRTEFDLIAYLAERPRAAIPRESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
             ++   +    + +D  +  LR+KL     G + I TV G GY
Sbjct: 184 EEIWGWGEGAGSRTVDSHVKALRRKL-----GPSVIRTVHGVGY 222


>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 216

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/206 (25%), Positives = 101/206 (49%), Gaps = 3/206 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+ A+   +   L    F V     G +  E       D I+LD  L    G ++
Sbjct: 10  VLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERIASRLPDMILLDWMLPGTSGIDL 69

Query: 63  LRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R L+  +     P+ +L+     +D+V GL++G DDY++KPF+  ELVARI+A++RR+ 
Sbjct: 70  ARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRRTV 129

Query: 121 GHAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              +   +    L+++  +    V G+ + +   E+++++          ++   L+ ++
Sbjct: 130 PENEDKPLEVDGLTLDPGSHRASVDGNALEMGPTEFRLLQFFMTHPERVYSRSQLLDRVW 189

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAA 205
                 E + +DV I +LRK L  + 
Sbjct: 190 GRNTYVEERTVDVHILRLRKALGPSG 215


>gi|220919080|ref|YP_002494384.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956934|gb|ACL67318.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 227

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +A  +   L  E   V V   G    E      +D ++LD  L D+ G 
Sbjct: 1   MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   + TPV +L+   S  +KV GL++GADDY+ KPF+ +EL+ARI A+ RR  
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHRR-- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G ++++   + + V      LT +EY ++  L+      L++   +  ++ 
Sbjct: 119 GGATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    ++DV++  LR KL         IE+V G GY L 
Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAPGVRIESVRGVGYRLV 220


>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
 gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
           29799]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 124/225 (55%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  LA ++  ++  + +   V   G DG++     ++D I+LD+ L  + GF
Sbjct: 1   MRILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQYDVIVLDVMLPGLNGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+R LR A  STPV +L+      DKV GL  GADDY++KPF+ EEL+ARIRA+ RR  
Sbjct: 61  EVVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL++ L  +++      + L  KE+++++LL    +  + K+  +  ++ 
Sbjct: 121 EVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMKLLLANSSAVVPKDDIITRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + E   ++V++  LRKKL+        I T+   GY L   A
Sbjct: 181 LESDAEDNNVEVYVSFLRKKLAFLDSVVQ-IRTMRKVGYFLEYPA 224


>gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
 gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
           HGF2]
          Length = 227

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/225 (31%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILLIEDD ++   + L L    + V     G +GI L      D I+LDLGL DI G E
Sbjct: 4   KILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDIDGSE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R      P+ ++S      +KV  L  GADDY++KPF+  EL+AR+R  +R+   
Sbjct: 64  VLRQIRSQS-EVPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARVRVALRKKTP 122

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + + V   L V+ +   V V+   +HLT  E++++ LL       LT    + +++
Sbjct: 123 RVVKEKVFVLDGLRVDFEKYKVYVEDREVHLTPIEFKLLVLLIEHAGKVLTHSFIIRNIW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                 + + + VF+  +R+K+   +    YI T  G GY   + 
Sbjct: 183 GYSSCEDSQSLRVFMANIRRKIEKDSSHPRYILTEVGVGYRFVDE 227


>gi|310828961|ref|YP_003961318.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
 gi|308740695|gb|ADO38355.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI LIEDD+A+A ++ L+L+SE F V      ++  +     +FD  ++D+ L D  GF 
Sbjct: 3   RIFLIEDDQAIAKNLMLLLQSEGFIVTHAATRKEATDTLVDNKFDLALIDISLPDGNGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   ++  + + PV  L+        V GL  GADDYI+KPF   EL+ARI   +R+S  
Sbjct: 63  VCTEVKEVQ-NIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSGR 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
            A +  V G L V+  +  V+  G  + L+  EY+++ +      + +T++  L+ L+D 
Sbjct: 122 SAATFEVCG-LQVDTASGVVKKDGSEVFLSALEYRLLLMFVNNPKSIITRDRLLDELWDA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             +      + V+I +LR+K+ +  G    I TV G GY L +    E
Sbjct: 181 AGEFVNDNTLTVYIKRLREKIEDDPGKPKIIRTVRGTGYRLGDGHAPE 228


>gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
 gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family
           [Thermus aquaticus Y51MC23]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  +EL LK   F V     G +G+   +    D ++LDLGL D+ G E
Sbjct: 3   RILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGLPDLDGGE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R     TP+ +L+   ++E KV  L  GADDY+ KPF+  EL+ARI+  +R   G
Sbjct: 63  VARRIRAT-DDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARIQVQLRHREG 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  G+L++    + V  +   + L+ KE+ ++ LL  R     +++     ++  
Sbjct: 122 --SEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGR 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               +  ++DV +  LR KL  A G   Y+ TV G GY LR   + E
Sbjct: 180 PLGRDSNVLDVHVANLRAKLREA-GAYGYLRTVRGLGYALRPRGEGE 225


>gi|167588685|ref|ZP_02381073.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 221

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  +  +I   L      V +   G     L +   FD ++LD+ L  + GF
Sbjct: 1   MRILVAEDDAEIGAAIRSRLTRLGHAVDLETDGATANSLLRVERFDLVVLDVMLPSMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +LR LR +  +TPV +++  S+I+D+V GL  GADDY+ KPF+  EL AR++A++RR+ 
Sbjct: 61  AILRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++  G L+++  ++  E+ G  + L+ +E+ ++E+L+ R     +KE  LN L+ 
Sbjct: 121 GHANDVLTLGGLTIDRSSRLAELDGRPLSLSRQEFALLEILASRPQRIFSKEGLLNQLFS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +EP    ++ ++ ++R+KL    G    I T  G GY +
Sbjct: 181 FGNEPSANAVEQYVTRVRRKL---HGSSVEIRTARGMGYQI 218


>gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 220

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/224 (32%), Positives = 132/224 (58%), Gaps = 6/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  L   +  +L S  F V+  + G D +   + +    ++LD+GL  I GF
Sbjct: 1   MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS--QRFNAAVLVLDIGLPGIDGF 58

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R A  +TPV +L+   +I D+V GL+ GADDY+ KPF   ELVARI+A++RRS 
Sbjct: 59  EVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSA 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               + +  G LS++   K  ++ G +I L+ +E+ ++E L    +  ++K+  ++ +  
Sbjct: 119 PQP-AQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP 177

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  +  ++V++ ++R K++++      I T+ G GY+L ++
Sbjct: 178 WGEDFTINAVEVYVSRIRLKIADSGVA---IRTIRGFGYMLEKS 218


>gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
 gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58]
          Length = 224

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 128/225 (56%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILLIEDD  +A  I   L ++  +  +   G  G+   +   FD +I+D  L D+ G 
Sbjct: 1   MRILLIEDDAEMAGFIADALAAQGQDTVIEAEGRQGLRRAQSENFDVLIVDRMLPDMEGA 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++  +R   +S P+ +L+ + +IED+V+GL SGADDY+ KPF   EL AR+ A+ RR +
Sbjct: 61  QLVSQMRDLGLSEPILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGK 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                    G + ++   +    +G RI L  +E++++E L  +++  +++ M L  ++ 
Sbjct: 121 SGLSDTGACGTIKIDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWH 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P+  I++  + +LR+KL NA    + I+TV G GY LR +A
Sbjct: 181 FHFDPQTNIVETHMSRLRQKL-NAGFDCDPIQTVRGVGYKLRSDA 224


>gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Butyrivibrio
           fibrisolvens 16/4]
          Length = 235

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF---YEFDAIILDLGLTDIPG 59
           IL+ +D+K +  ++ + L+SE  NV     G + +++       +   I++D+ + ++ G
Sbjct: 4   ILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMPEMDG 63

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
              +  +R    + P+ +L+  S   DKV GL  GADDY++KPFN  EL+AR+++ +RR 
Sbjct: 64  IAAMAEIRKTS-NVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKSQLRRY 122

Query: 120 RGHAQ---------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                         + I  G + +N  +K V + G+ + LT  EY +++LL   K   L+
Sbjct: 123 TMLGSQNNDNIVNTNTISIGGIELNDKSKEVTLDGNPVSLTPLEYDILKLLMTHKGEVLS 182

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  +++         + V I  LR+KL   +    +++ VWG GY   
Sbjct: 183 PRDIYESVWNETGLGAESTVAVHIRHLREKLEYDSANPRHLKAVWGHGYKFE 234


>gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFMLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +     +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSAPRFIQTVRGRGYVFVPDGEAHAQAH 241


>gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
 gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum
           UW551]
 gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum
           MolK2]
 gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum
           IPO1609]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 1   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGHPVP-LLKTVRGLGYRL 222


>gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans
           CH34]
 gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system
           with Rmet_0464 [Cupriavidus metallidurans CH34]
          Length = 229

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDDVLADGLTRSLRQSGYAVDHVANGVEADSALSTQSFDLLILDLGLPRMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR      PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+VRR  
Sbjct: 61  EVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +L+  G L+ +   +   +    + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+     G   I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIE---VGGIRIATVRGLGYCLEK 220


>gi|163789439|ref|ZP_02183878.1| DNA-binding response regulator [Carnobacterium sp. AT7]
 gi|159875293|gb|EDP69358.1| DNA-binding response regulator [Carnobacterium sp. AT7]
          Length = 238

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 14/232 (6%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELC--KFYEFDAIILDLGLTDIP 58
           M IL+IED++++   +E+    E +       G++G++       ++D +ILDL L  + 
Sbjct: 1   MNILMIEDNQSVCEMMEMFFMKEEWKATFIQDGKEGLDAFLNDSGKWDLVILDLNLPSLD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++ R +R      P+ +L+   S  D+V GL+ GADDY++KPF+   L+ARI+A+ RR
Sbjct: 61  GMQICREMRKVSKIIPIIMLTAKDSESDQVIGLEIGADDYVTKPFSPLTLIARIKALYRR 120

Query: 119 SRGHAQSLIVTGD---------LSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTT 168
           +           D         L ++   +   +    I  LT KE++++  L+      
Sbjct: 121 ADLIRDEADKLADKAYEIETKYLKMDKRTRQAILYDKPIESLTPKEFELLYTLAKSPRQV 180

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            ++E  L  ++D     + + +D  I KLR+K+     G   ++TVWG GY 
Sbjct: 181 FSREQLLTIVWDYEYFGDERTVDAHIKKLRQKI--DKTGPQVVQTVWGVGYK 230


>gi|148264601|ref|YP_001231307.1| two component transcriptional regulator [Geobacter uraniireducens
           Rf4]
 gi|146398101|gb|ABQ26734.1| two component transcriptional regulator, winged helix family
           [Geobacter uraniireducens Rf4]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 8/228 (3%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ IL+IED+K LA  I   L+ E +   +   G  G+E  +    D I+LDL L  + G
Sbjct: 1   MKTILVIEDEKDLAELIAFNLEKEGYRPLIALDGISGLEAVRSNPPDLILLDLMLPGLLG 60

Query: 60  FEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            E+ + L+  + +   P+ +L+      D+V G + GADDY+ KPF+  EL+ R++A++R
Sbjct: 61  TEICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLR 120

Query: 118 RSRGH--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           R+     A+  I  G ++++ +   V V G  I LT  E++++  L+ R     ++++ L
Sbjct: 121 RTMPEKTAEKRITIGLVTIDTERHLVNVAGEEIILTTTEFKLLLNLAERLGRVQSRDILL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            +++      + + +D  + +LR KL  A      I+TV G GY + E
Sbjct: 181 QNVWGYNYVGDSRTVDTHVTRLRTKLGEAG---EMIKTVRGFGYKMEE 225


>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY+ KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWVDTEQ 225


>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
           [Acidovorax ebreus TPSY]
 gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
           [Acidovorax ebreus TPSY]
          Length = 242

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 8/237 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKF-YEFDAIILDLGLTDIPGF 60
           RIL++ED++ +A  +   L+   +       G   ++        D  +LD+ L  I G 
Sbjct: 6   RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           EVLR  R      P+ +++      D++ GL+ GADDYI KPF+  E+VAR++A++RR  
Sbjct: 66  EVLRQARR-HTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +  AQ+ +  G L ++       + G  + LT +E+ ++  L     + L++   L 
Sbjct: 125 PLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184

Query: 177 HLY-DGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAKDETCE 231
           H Y D   EP  + +D  I  LR+KL      G ++I +V+G G+     A  +  +
Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFDPPAAPQDAQ 241


>gi|170739183|ref|YP_001767838.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
 gi|168193457|gb|ACA15404.1| two component transcriptional regulator, winged helix family
           [Methylobacterium sp. 4-46]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ ++  +   L+  +  V +     +   L      D I+LDL L    G  V
Sbjct: 9   ILLVEDDREISQLVARYLRGNDLRVSLAGDAREMDRLLADSRVDLIVLDLMLPGEDGLSV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R LR    S P+ +L+  S   D++ GL+ GADDY++KPFN  EL+ARIRA++RR    
Sbjct: 69  CRRLRA-HSSVPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRGGAN 127

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               R      +      ++   + +    G ++ LT  E+ ++  + LR    L+++  
Sbjct: 128 GGAVRDEEVRRLSFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLSRDQL 187

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           L+        P  + IDV + ++R+K+         I+T+   GYV   + 
Sbjct: 188 LDLTQGRAPGPFERSIDVLVSRIRQKIERDPRNPEMIKTIRSGGYVFTPDV 238


>gi|282898997|ref|ZP_06306979.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
 gi|281196137|gb|EFA71052.1| Two component Transcriptional regulator, Winged helix family
           [Cylindrospermopsis raciborskii CS-505]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+IE D+ LA  +   L+   +   +      G+  C+  +   I++D  L    G  
Sbjct: 8   HVLVIEPDETLASQLGFDLQEAGYEAIIATDANSGLHKCRDLQPALIVVDRMLPGESGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             ++LR    + PV IL    +++D+V  L++GADDYI KP+  EE    IR  ++    
Sbjct: 68  FCKSLRATGNTKPVLILMARDAMDDRVACLEAGADDYILKPYRSEEFSKLIRLYLK-PDV 126

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +   +  GDL +++  +        I LT KE+++++         LT+E  L +++  
Sbjct: 127 DSSEQLRFGDLVLDIGTRRAIYNNKAIDLTMKEFELLKFFMEHPREVLTREQILENVWGY 186

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               E  +I+V+I  LR K+    G K  I+TV G GYVLRE+
Sbjct: 187 DFVGESNVIEVYIRYLRLKIEEN-GQKRLIQTVRGVGYVLRES 228


>gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
 gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/227 (29%), Positives = 114/227 (50%), Gaps = 7/227 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +   +  +++ + + V     G + +   +  +F  +ILDL L  I G 
Sbjct: 5   INILIVEDDNGINTLLARLMEKKGYGVVQAYSGTEAMLHIEAKDFQLVILDLMLPGITGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+++ +R  K   PV ++S     +DK+  L  GADDYI+KPF+ EE+ AR+ + +RR  
Sbjct: 65  ELIKNIRKTK-QMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYM 123

Query: 121 G------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +   D+ +N + K V V G  I  T +E++++ELL        +K   
Sbjct: 124 KFSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++      +   ++V +  LR KL  A   + YIET+WG GY +
Sbjct: 184 FESVWGEEYLGDDNTVNVHMSNLRSKLQKANPKEEYIETIWGMGYKI 230


>gi|241666669|ref|YP_002984753.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862126|gb|ACS59791.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 230

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 119/225 (52%), Gaps = 4/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   + + L ++ + V          +       D I+LDLGL D  G +
Sbjct: 7   KILVVDDEPPIRKLLRVGLTAQGYEVREAPNAAAARQSVADDMPDLIVLDLGLPDTSGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L+  R   +S PV ILS  +     V+ L+SGADDY++KPF   EL ARIR  +R    
Sbjct: 67  LLQVWRDEGLSMPVVILSSRTDEAGIVKALESGADDYVTKPFGINELGARIRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   +++  TG LS++L  + V+V+G  I L+ KEY ++ +L+      LT +  L  ++
Sbjct: 127 QQGEKAIFQTGGLSIDLVKRIVKVEGAEIKLSPKEYDILRVLAQHAGKVLTHQFLLKQVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +   + V++ +LR+K+       +YI T  G GY LRE 
Sbjct: 187 GPAADVQ--YLRVYVRQLRQKVEQIPDQPHYITTETGVGYRLREP 229


>gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
 gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium
           Broad-1]
          Length = 221

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 7/224 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  +A  +   L ++         G +G+E      FD ++LD+GL  I GFE
Sbjct: 3   RILIVEDEDRIAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGLPTIDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR      PV +L+   S+ D V  L+ GADDY++KPF   EL ARI   +R+   
Sbjct: 63  VLDQLRAQGSRMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLRQQDN 122

Query: 122 HAQS--LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  + +G ++++L  + + V G    L+ +E+ + E+L       L++   L+  +
Sbjct: 123 TDAEVGELRSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLAW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               +P   ++DV++  LRKKL +A      +ETV G GY  + 
Sbjct: 183 GMDFDPGSNVVDVYVGYLRKKLGSA-----RVETVRGMGYRFQP 221


>gi|313887137|ref|ZP_07820833.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923366|gb|EFR34179.1| response regulator receiver domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++D++ L   +   L  E + V      E+ +++    E+  +ILD+ +  + GF+
Sbjct: 7   KLLLVDDEEDLREILTFNLAGEGYQVSTAANAEEALKM-PLEEYHLLILDVMMPGMSGFK 65

Query: 62  VLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +   +R   K++TP+  L+   +  D + G   GADDY++KPF+ +EL ARI+AI+ RS 
Sbjct: 66  LAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRSL 125

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S I  G L ++LDAK V V G  I LT KE +++ELL+   +   ++E  L+
Sbjct: 126 QGGLDFEESQIEIGTLLIDLDAKQVFVNGEPIDLTKKELEILELLARDPSKVFSREEILD 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++        + IDV I ++RKKL    G    I    G GY L E 
Sbjct: 186 RVWREDVFVMERTIDVHITRIRKKLR---GSGIKIINRSGFGYCLVEE 230


>gi|169827892|ref|YP_001698050.1| putative sensory transduction protein [Lysinibacillus sphaericus
           C3-41]
 gi|168992380|gb|ACA39920.1| Hypothetical sensory transduction protein [Lysinibacillus
           sphaericus C3-41]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 8/218 (3%)

Query: 10  KALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVA 69
            A+   ++  L+ E + V     G +G+E  +   FD +++D  L ++ G  V + +R  
Sbjct: 3   AAIGRIVKDTLEQEGYQVTWATTGLEGLEDFQKQPFDLVLVDWMLPEMDGLTVCQNIRWE 62

Query: 70  KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH------A 123
               P+ ++S      DKV GLQ GADDYI+KPF+ EEL AR+ + +RR R +       
Sbjct: 63  S-DVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHLRRWRRYNKQDEVE 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
           +       L ++   + V +    I LT KE+ +++LL+   + T TK+    +++    
Sbjct: 121 EQTAYANGLIIDWKREIVSINEQEIALTQKEFALVKLLAKNPSQTFTKKELYQYIWQQAT 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +   + V I  LR+KL ++     +I+TVWG+GY  
Sbjct: 181 LEDTHTVTVHIKALREKLKDSVKHPYFIQTVWGKGYRF 218


>gi|146280681|ref|YP_001170834.1| osmolarity response regulator [Pseudomonas stutzeri A1501]
 gi|145568886|gb|ABP77992.1| two-component response regulator OmpR [Pseudomonas stutzeri A1501]
 gi|327478949|gb|AEA82259.1| osmolarity response regulator [Pseudomonas stutzeri DSM 4166]
          Length = 244

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V   +  E    L     F  ++LDL +    G  
Sbjct: 12  KILIVDDDARLRRLLERFLDEQGYRVRTVENTEQMDRLLSRELFQLVVLDLMMPGEDGLS 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR A    P+ +L+       +++GL+ GADDY++KPFN  EL+ARIRA++RR   
Sbjct: 72  ACRRLREANNQIPIIMLTAKGDEASRIQGLEQGADDYLAKPFNPRELLARIRAVLRRQAP 131

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                       +  G+  ++L  + ++       LT  E+ +++ L       LT++  
Sbjct: 132 QVPGAPASEDETVTFGEYELSLATRELKKGNEVHMLTTGEFAVLKALVQHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|152994709|ref|YP_001339544.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
 gi|150835633|gb|ABR69609.1| two component transcriptional regulator, winged helix family
           [Marinomonas sp. MWYL1]
          Length = 245

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 11/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILLIEDD  LA  I   L  + F V+  D G+ G+EL +  +   IILDL L ++ G  V
Sbjct: 9   ILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDGLTV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R L        + IL+      D+V  L+ GADD+++KP +   L+AR+RA++RR    
Sbjct: 69  CRRL-QTWYQGALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRRDEKR 127

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A             ++   L +N+  + VE+ G  I LT  E++++ LL+     T++++
Sbjct: 128 ANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKTVSRD 187

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                L     +   + ID  I  LRKKL ++ G    I TV G+GY+ 
Sbjct: 188 EISQSLRGIEYDGLDRSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLF 236


>gi|28377207|ref|NP_784099.1| response regulator [Lactobacillus plantarum WCFS1]
 gi|28270038|emb|CAD62938.1| response regulator [Lactobacillus plantarum WCFS1]
          Length = 234

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTD 56
           M+  IL++ED+ +L+  +   L+ E+FNV V   G   +E       E   I+LD  L  
Sbjct: 1   MKNTILIVEDEGSLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I 
Sbjct: 61  LDGMEVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQ 119

Query: 117 RRSRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR     +   V    D+ ++  A  V      + LT +EY +++      +   T++  
Sbjct: 120 RRIENQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++      +  ++DV++  LR K++        I+TV G GY LRE   D
Sbjct: 180 LDQVWGADFLGQQNVVDVYVGYLRNKITTTGASP-LIQTVRGVGYKLREPMSD 231


>gi|317508033|ref|ZP_07965722.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
 gi|316253672|gb|EFV13053.1| response regulator receiver domain-containing protein [Segniliparus
           rugosus ATCC BAA-974]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F+  V   G   +   +    D ++LD+ L  + G +
Sbjct: 7   RILVVDDDVALAEMLTIVLRGEGFDPVVVSDGSKVLPAVRELRPDLVLLDVMLPGLNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRQVRAESG-VPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++   D+ +++ A  V      I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRADQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224


>gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
 gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
          Length = 245

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 112/231 (48%), Gaps = 12/231 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L+   F   +   G +   +      D +ILD+ +    G  
Sbjct: 6   HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R    + P+ +L+ +S   D++ GL+ GADDY+SKPFN  EL+AR+RAI+RRS+G
Sbjct: 66  LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124

Query: 122 ----------HAQSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                     + + +      S++   + +       I L+  E+ ++  L  R    L+
Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++  L+   +    P  + ID+ I +LR KL         I+T+ G GYVL
Sbjct: 185 RDKLLDLTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235


>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 227

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A++ TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RRS
Sbjct: 61  TLCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGKLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  + TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFDKPLLHTVHGVGYRLAE 222


>gi|319944908|ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599]
 gi|319741478|gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599]
          Length = 221

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  + +++   L   ++       G   +   +   +D ++LDLGL    G 
Sbjct: 1   MRVLLVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR++R    + PV I++   +++D++ GL +GADDYI KPF   EL+AR+RA++RR  
Sbjct: 61  EVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A  ++ +  L+++        QG   + L+ +E+ ++  L  R    L++    + +Y
Sbjct: 121 GQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
               E E   I+  I  LRKKL + A     I  + G G+++ + A
Sbjct: 181 GWGQEVESNAIEYLIHSLRKKLGSEA-----IRNIRGAGWMVSKQA 221


>gi|296394611|ref|YP_003659495.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
 gi|296181758|gb|ADG98664.1| two component transcriptional regulator, winged helix family
           [Segniliparus rotundus DSM 44985]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 1/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ALA  + ++L+ E F+  V   G   +   +    D ++LD+ L  + G +
Sbjct: 7   RILVVDDDVALAEMLTIVLRGEGFDPVVVSDGTKVLPAVRELRPDLVLLDVMLPGLNGID 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+ +L+  +   D V GL+SGADDY+ KPF  +ELVAR+RA +RR+  
Sbjct: 67  VCRQVRAESG-VPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A  ++   D+ +++ A  V      I LT  E+ ++  L+ +     T+E+ L  ++  
Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRGDQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWGY 185

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           R   + ++++V + +LR K+         + TV G GY 
Sbjct: 186 RHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224


>gi|257140136|ref|ZP_05588398.1| DNA-binding response regulator [Burkholderia thailandensis E264]
          Length = 257

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 11  MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 70

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 71  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 131 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 191 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEK 230


>gi|111022588|ref|YP_705560.1| response regulator (protein-glutamate methylesterase) [Rhodococcus
           jostii RHA1]
 gi|110822118|gb|ABG97402.1| response regulator (protein-glutamate methylesterase) [Rhodococcus
           jostii RHA1]
          Length = 228

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 4/229 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD+A+  S+   L    ++V +   G D +E       DAI+LD+ +  + G 
Sbjct: 1   MRILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDAIVLDVMMPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R LR      P+ +L+   S+ ++V GL +GADDY+ KPF  EEL+AR+RA++RR+ 
Sbjct: 61  EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120

Query: 121 GHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +   DL+++   + V      I LT  E+ ++E+L       LT+   L  
Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++          ++V++  LR+K     G    + TV G GYVLRE   
Sbjct: 181 VWGYDFPTSGNALEVYVGYLRRKTEAD-GETRLLHTVRGVGYVLRETPP 228


>gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDSASFGSLVIDRAAMTVTKNGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 234

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 111/224 (49%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  LA  + + L+ E F V     GE GI        D  +LD+ +    G +
Sbjct: 9   KVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKSGID 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R    + PV +L+      D++ GL+ GADDY+ KP    EL ARIRAI+RRS G
Sbjct: 69  VLVQIRAQG-AMPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRRSSG 127

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                + S ++ G LS+  + +  E  G  + LT  E+ ++E+L+      ++K      
Sbjct: 128 AESALSSSTVIAGVLSIWPEQRRAEWAGKPLELTSTEFNLLEVLARNAGQVVSKSELSEQ 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + IDV +  +R+KL     G++ I  V+ +GY  
Sbjct: 188 ALGRPLARFDRSIDVHLSSIRRKLEPLPDGRSRILAVFNKGYQF 231


>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile ATCC 43255]
          Length = 230

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/229 (34%), Positives = 121/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL    E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKQEPDLIILDIMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  PV  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +  G L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++    E +   +   + K+R K S     K YI TVWG GY   +
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii
           DSM 18315]
          Length = 255

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/227 (26%), Positives = 113/227 (49%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ L   ++  L+ E + V      E+ +++     +  ++LD+ + +I GF+
Sbjct: 32  KILVVDDEEDLCEILKFNLEIEGYEVDTAFSAEEALKM-DIASYQLLLLDVMMGEISGFK 90

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   LR  +     P+  L+   +  D + G   GADDYISKPF+  ++VAR++A++RR+
Sbjct: 91  MASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLRRT 150

Query: 120 RG----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                      +    LS++       V G  + LT KE+++++LL   K    ++E  L
Sbjct: 151 SDKEKVQENECLKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSREEIL 210

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 211 SRIWKDEVYVLDRTIDVNITRLRKKIGPYGKN---IVTRLGFGYCFE 254


>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
           protein [Rhizobium etli GR56]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 7/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +   I   L+           G + +   +    D IILD+G+ D+ G E
Sbjct: 4   RILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIGMPDMDGLE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + P+  LS      D++ GL+ G DDY++KPF+  EL+AR++AI++RS  
Sbjct: 64  VCRQIRQTS-ALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122

Query: 122 HAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            A        +V G++ ++   +TV      + +TG E+ ++E L  R     ++E  + 
Sbjct: 123 GAAPDRRHAALVAGEIILDRHGRTVMFGDSALAMTGLEFAILEALLSRPGMVFSREQLME 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             Y        + ID  I  +R K   A GG   I TV G G+ L
Sbjct: 183 AAYGAGTYVADRTIDSHIRNIRAKF-TAVGGSGIIATVHGIGFKL 226


>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
 gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 61/225 (27%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     V V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGIGYRWIDTEQ 225


>gi|167562133|ref|ZP_02355049.1| DNA-binding response regulator KdpE [Burkholderia oklahomensis
           EO147]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQG 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 L+  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPLVKFGDVSVDLALRRVWRGGEVVHLTPLEYRLLAALVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 229


>gi|300690116|ref|YP_003751111.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07]
 gi|299077176|emb|CBJ49802.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07]
          Length = 243

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 10/235 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLIEDD  LA  I   L +  F V V   G+  +   + ++   +ILDL L  + G E
Sbjct: 9   KVLLIEDDDRLAQLISEYLGNYEFTVAVVRRGDTAVAAVREHQPALVILDLMLPHLDGME 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      PV IL+      D+V GL+ GADDY+ KP     LVAR+RA++RR+  
Sbjct: 69  VCRRIRAFS-RVPVLILTARVDPYDQVAGLEIGADDYVLKPIEPRLLVARVRALLRRAAP 127

Query: 122 HAQS---------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
              +          +V G+L ++   +TV  +G  + L   E+ ++ +L+    T L+++
Sbjct: 128 AMSTSEPAVPHDDTLVFGELVISPPNRTVTWRGQPVELKTAEFNLLLILARAAGTVLSRD 187

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             L  L     +   + +D  I +LR++  +A+   + I+T+WGRGY+   +A +
Sbjct: 188 DILKQLRGIEFDGLDRTVDSGISRLRRRFGDASPEPHKIKTIWGRGYLFSPSAWE 242


>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
 gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYKWK 221


>gi|291326456|ref|ZP_06124598.2| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
 gi|291314289|gb|EFE54742.1| KDP operon transcriptional regulatory protein KdpE [Providencia
           rettgeri DSM 1131]
          Length = 239

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/222 (30%), Positives = 111/222 (50%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IED+K +   + L L+ E + V+  +    G+      + D +ILDLGL D  G +
Sbjct: 17  QILVIEDEKEIRRFVRLALEGEGWKVFEAENYHRGLIESGTRQPDLLILDLGLPDGDGLD 76

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++R LR    S P+ +LS       KV  L +GADDY++KPF   EL+AR+R  +RR   
Sbjct: 77  LIRDLRQWS-SIPIIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRRFGK 135

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S    GD++++   + V  QG  +HLT  E++++  L       LT+   L  ++
Sbjct: 136 STQENSKCQFGDITIDFINRIVTKQGEELHLTPIEFRLLSELVANSGKVLTQRHLLLQVW 195

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     + +++  LR+KL N      ++ T  G GY  
Sbjct: 196 GPNYVEHNHYLRIYMGHLRQKLENDPARPIHLLTETGIGYRF 237


>gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
 gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium
           profundum 3TCK]
          Length = 224

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/226 (37%), Positives = 130/226 (57%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD+ L+H ++  L      V      E+G+   + Y  D  ++D+GL D  G 
Sbjct: 1   MRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPNDIAVVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  PV IL+  ++ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMSAGDIRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E +   I+V I +LRKK     G  N I T+ G+GY+    A+
Sbjct: 181 -DQEGDPNTIEVMISRLRKKF-ITTGQDNPITTIRGQGYIFELQAQ 224


>gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321]
 gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +    +  L    + V V   G + +E+ K    D II D+ +  + G+++
Sbjct: 5   ILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMDGYDL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRG 121
           +  ++      P   ++  +S +DK+ GL  GADD+I+KPF+  ELV R+  I+RR  RG
Sbjct: 65  ISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRRLHRG 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++  GDL +N  +  V+V    + LT K ++++ LL+       +K      ++  
Sbjct: 125 GETEVVSLGDLRMNHGSHEVQVGDVALDLTVKSFELLWLLASNPERVFSKTDLYEKIWQE 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLRE 223
               +   ++V I  LR++L+  A  +   I+TVWG GY + +
Sbjct: 185 DYVDDTNTLNVHIHALRQELAKHASAETPTIKTVWGLGYKIEK 227


>gi|295091538|emb|CBK77645.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           +LL+EDD +L   ++  L    F+V +    E+    L    ++D +ILD+ L D  GF+
Sbjct: 4   LLLLEDDISLIDGLQYSLNKNGFHVDIARTVEEAKNSLTDINKYDLLILDVTLPDGTGFD 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+  L+      + +RGL  G DDY++KPF   EL +RIRA++RR+  
Sbjct: 64  VCEKVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRALLRRAGV 123

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +Q   +++  GD+S++L A  V + G  + LT  EY+++ LL    N  +++++ LN L
Sbjct: 124 SSQDKTNILKCGDISIDLLASRVLLNGRILELTNAEYRLLCLLVRNANRVVSRDIILNDL 183

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +DG  +  +   + V+I +LR+K+   A    ++ TV G GY  +E
Sbjct: 184 WDGTGNFVDDNTLSVYIRRLREKVEIDASHPQHLITVRGFGYQWKE 229


>gi|302878154|ref|YP_003846718.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
 gi|302580943|gb|ADL54954.1| two component transcriptional regulator, winged helix family
           [Gallionella capsiferriformans ES-2]
          Length = 220

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 5/224 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +  ++ + LK   ++V     G     + +  E   ++LDLGL    G 
Sbjct: 1   MRILLVEDDAMIGAAVSVTLKDAAYSVDWVKDGVTASSVLEQGEHQCVLLDLGLPKRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR+   + PV I++    +ED+++GL  GADDY+ KPF+  EL+AR+RA++RR  
Sbjct: 61  DVLRRLRLGGNTMPVIIITARDGVEDRIKGLDFGADDYLVKPFDVNELLARLRAVIRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  L+  G ++++  +   +     + L+ +E+ ++  L LR    LT+      +Y 
Sbjct: 121 GQAAPLLSNGRVTLDPASHQAQCDDTLVTLSAREFALLHALLLRPGAILTRAELEERIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +E E   +D  I  +RKKL   A     I+ V G G+++ ++
Sbjct: 181 WNEEVESNAVDFLIHGIRKKLGADA-----IKNVRGAGWMVEKS 219


>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
 gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
           protein [Clostridium cellulovorans 743B]
 gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
           [Clostridium cellulovorans 743B]
          Length = 218

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 127/225 (56%), Gaps = 9/225 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  L+IED++A+++ I++ L    +       G + + L K   FD I++D+ L  + 
Sbjct: 1   MKINILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+++ ++   ++ PV  L+  + + DKV GL++GA+DYI KPF   EL+ARI  ++RR
Sbjct: 61  GFELMKRIK--DLNIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ + I    L +  D + ++     I LT KE++++ LL   KN  L++E  L  +
Sbjct: 119 YSKNS-NCIEFKSLQIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKI 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + ID  I K+RKKL+ A      I+TV+  GY L E
Sbjct: 178 WGYEYMGETRTIDTHIQKVRKKLNIADN----IKTVYKIGYRLEE 218


>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
 gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYNEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 221


>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
 gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
           16795]
          Length = 222

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/223 (29%), Positives = 119/223 (53%), Gaps = 7/223 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD      ++  L S  + V   + G +GI++ K   ++ I+LD+ + ++ GF +
Sbjct: 5   ILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDIVMPNLDGFSM 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-G 121
            + +R      P+  ++ +SS  D+++G     DDYI KPF+   L+ RI A++RRS+  
Sbjct: 65  CKMIRKES-DVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKED 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +    + +NL   + E+ G  I LT KE+ +++ L       +T+E  L+ ++  
Sbjct: 124 KAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               + +I+D  I  +RKK+        YI+TV G GY L+++
Sbjct: 184 DYFGDTRIVDAHIKNIRKKI-----ILPYIKTVKGIGYTLQKD 221


>gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
 gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 1/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+K +   +   L    + V     GE+ +E     ++D I+LDL L  + G 
Sbjct: 1   MRLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+LR LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR  
Sbjct: 61  EILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 + +G +S +   +    +G ++ LT KE  ++E L L     +++E  + H++D
Sbjct: 121 VQKDVCLESGGISFDTIKREAYAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +     I V +  LR+KL    G  + I    G GY +RE A
Sbjct: 181 ASVDSFSGAIRVHMSSLRRKLKAVLGY-DPILNKVGEGYKIREEA 224


>gi|153939788|ref|YP_001390660.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152935684|gb|ABS41182.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
          Length = 230

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 119/226 (52%), Gaps = 4/226 (1%)

Query: 1   MR-ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPG 59
           M+ ILL+ED+ +L   I+  L  E +NV  TD  ++  +     + D IILD+ L D  G
Sbjct: 1   MKSILLVEDNMSLNRGIQFSLMKERYNVIATDSIKESQQKLNKEKVDLIILDINLPDGNG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           F+    +R    + P+  L+ + S  D V GL  GADDYI+KPF   EL++R+ AI+RR+
Sbjct: 61  FDYCLDIRKTS-NIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRT 119

Query: 120 RGHAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 ++I + D+   ++   +E  G  I L+  E ++++         L+KE  + +L
Sbjct: 120 SNDCDFNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENL 179

Query: 179 YDGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++   +      + V + ++R+K+        YI+T+ G GYV +E
Sbjct: 180 WNIDGEFINENTVAVNVRRIREKIEEVPSKPEYIQTIRGIGYVWKE 225


>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
 gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
           HTCC2080]
          Length = 234

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 4/226 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  L   +   L++E F V      +    L    + D ++LD  L    G E
Sbjct: 3   KILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIE 62

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +L  L+  +   S PV +++  +  ED ++GL  GA DYI+KPF+ +EL+ARIR I R +
Sbjct: 63  LLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHT 122

Query: 120 RGHAQSL-IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +  +  GDL + LD + V +    + L   E+++++   L       ++  L H+
Sbjct: 123 EDDDVNHQLRVGDLVLELDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHI 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNA-AGGKNYIETVWGRGYVLRE 223
           +      + + +DV I +LRK L +A       I+TV G GY    
Sbjct: 183 WGNNACVDARTVDVSIRRLRKTLQSAHPVYSELIQTVRGTGYRFSP 228


>gi|172061615|ref|YP_001809267.1| two component transcriptional regulator [Burkholderia ambifaria
           MC40-6]
 gi|171994132|gb|ACB65051.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MC40-6]
          Length = 242

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G D         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +      H + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDHVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRISTVRGLGYCLEK 220


>gi|94984195|ref|YP_603559.1| two component transcriptional regulator [Deinococcus geothermalis
           DSM 11300]
 gi|94554476|gb|ABF44390.1| two component transcriptional regulator, winged helix family
           [Deinococcus geothermalis DSM 11300]
          Length = 222

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD A+   +   L++E   V  T  G  G         D  ILD  L    G +
Sbjct: 3   RILIVDDDPAILEILGAYLRAEGHVVLETQDGTTGRAKLAEA--DLAILDWMLPGASGLD 60

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R  R  +   P+ +L+     EDK+RGL++GADDY++KPF+  E+V   R      R 
Sbjct: 61  LARQQRRDRPDFPILLLTARGEEEDKLRGLEAGADDYVTKPFSPREVV--ARVRALLRRA 118

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             Q  + TG L ++   +T  + G  + L+  E+ ++  L+       +++  L  ++  
Sbjct: 119 RLQDSVSTGGLQLDERTRTAMLDGQELLLSKLEFDLLLTLARHPGFVWSRDRLLERVWGA 178

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                 +++DV +  LR+KL        +IETV G GY  RE A
Sbjct: 179 DFPGVERVVDVHMAALRRKLGEHPEQPRFIETVRGVGYRFREEA 222


>gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
 gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L L+ +N+ V     GE GIE+     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLALELRYKNYFVDSAYDGEQGIEIFSKNSYDVVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + LR     TP+ +++   S+ DKV  L  GA+DYI KPF  EEL+ARIR   R    
Sbjct: 72  VCQELRKL-ADTPIIVITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVSTRNKEN 130

Query: 122 HAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                     ++ +++ AK V +    I LT  E+ ++E     K  + ++E  +  ++ 
Sbjct: 131 SNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMKNKGLSCSREKIIIDVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKID---SKSKYIHTIRGFGYIFQ 229


>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
 gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + +EL +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVEDYLETVYKVGYKWK 221


>gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena
           XCL-2]
 gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family
           [Thiomicrospira crunogena XCL-2]
          Length = 223

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+ED+  L  +++  L  + + V     GE+ + L   +E+D IILDLGL    G +
Sbjct: 3   KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKSGLQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  +R  + +TPV IL+  ++ +++V GL+ GADDY+ KPF+ EEL+ARI  +++R   
Sbjct: 63  VLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKRPTQ 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +  ++LD + ++V+  R  LT  E+ +  L     N   +K+  +  L D 
Sbjct: 123 PQARRLQFQEYELDLDCRELKVKEQRFALTKTEFALARLFLSHPNRVFSKDTLMQRLGDQ 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             E +  +I+V+I KLR+ +   A     IET+ G+GY   
Sbjct: 183 HHERDSNLIEVYIRKLRQYMGKTA-----IETLRGQGYRFV 218


>gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 222

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/222 (36%), Positives = 132/222 (59%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+   A ++   L +E F V V   G DG+     +++DA++LD+ L ++ G+
Sbjct: 1   MRLLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIMLPELSGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ LR A+  TPV +L+      D+      GADDY+SKPF+   L+AR+RA++RR  
Sbjct: 61  EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++  A+TV     RI LT +E+ ++E L  R+   LTK   L H++D
Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E +  +++V++  LR+K+ +A  G   IETV G GY L 
Sbjct: 181 AHYEGDENVVEVYVGYLRRKI-DAPFGTRTIETVRGVGYRLV 221


>gi|88809226|ref|ZP_01124735.1| two-component response regulator [Synechococcus sp. WH 7805]
 gi|88787168|gb|EAR18326.1| two-component response regulator [Synechococcus sp. WH 7805]
          Length = 235

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/223 (31%), Positives = 116/223 (52%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD  L   +   L  ++      + G + + L +   FD ++LD  L D  G E
Sbjct: 8   QLLIVDDDPELLQFLLEELSQDSIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R LR +  +TPV +L+    +ED+V+ L  GADDYI+KPF   EL AR+RA +RRSR 
Sbjct: 68  ICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSRY 127

Query: 121 ---GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                    +  GDL +NL  +TV      + LT +E+ ++  L   + T   +E  L+ 
Sbjct: 128 PSVERPSEQLTLGDLRINLMTRTVRRGERDVSLTQREFDLLAFLVKHQGTVQPREQILDS 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   +DV++  LR+KL   A     + TV G G++
Sbjct: 188 VWGAPFVGDPNTLDVYMGYLRRKLE-GAELPKLLHTVRGVGFM 229


>gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
 gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM
           43021]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 11/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A ++   L +E F+V V   GE  +        D ++LD  L  + G E
Sbjct: 20  RVLVVEDDETIARAVRHRLAAEGFDVQVVGDGEGALAAYARSGPDVVVLDRLLPGLDGLE 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R ++ A+   PV +L+ +    D + GL  GADDY++KPF+  ELVAR+ A++RR   
Sbjct: 80  VCRRMQAARP-VPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVER 138

Query: 122 HAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +Q      +I  GD+ ++   + V V+G    LT  E+ ++  L+ R      +E  LN
Sbjct: 139 ASQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLLN 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++   +    + +D  +  LR+KL     G   + TV G GY L 
Sbjct: 199 DIWGFSEAAATRTVDSHVRALRRKL-----GPGVVRTVHGVGYALV 239


>gi|290963198|ref|YP_003494380.1| two-component system regulator [Streptomyces scabiei 87.22]
 gi|260652724|emb|CBG75857.1| putative two-component system regulator [Streptomyces scabiei
           87.22]
          Length = 273

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/249 (29%), Positives = 118/249 (47%), Gaps = 36/249 (14%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD+ +A  +   L    + V     G   +      E + ++LDLGL D+ G 
Sbjct: 15  MRVLLIEDDERIAGPLAEGLARYGYTVERARTGSAALVAA---EPEMVLLDLGLPDMDGI 71

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +V RALR+     P+ +++      D+V GL+ GADDY++KPF   ELVARIRA+ RR+R
Sbjct: 72  DVCRALRLRS-DVPIIMITARGEEVDRVLGLELGADDYMAKPFGVRELVARIRAVTRRAR 130

Query: 121 GH----------------------------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTG 152
                                         A +    G L ++   + V +Q   I L  
Sbjct: 131 PRTATGADGTGGAAEAGRPGEPPGGTDSRPADAPQAVGPLVIDRRTRQVHLQEAPIALAP 190

Query: 153 KEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIE 212
           KE+ ++  L+L      +++  ++ ++D       K +DV +  LR+KL +      +IE
Sbjct: 191 KEFDLLAHLALDPGAVCSRQQIVDQVWDPHFFGPTKTLDVHVAALRRKLGD----PAWIE 246

Query: 213 TVWGRGYVL 221
           TV   G+ L
Sbjct: 247 TVRRVGFRL 255


>gi|227819484|ref|YP_002823455.1| response regulator [Sinorhizobium fredii NGR234]
 gi|227338483|gb|ACP22702.1| response regulator in two-component regulatory system with KdpE,
           regulation of potassium translocation [Sinorhizobium
           fredii NGR234]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 4/227 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   + + L SE + V       D I        D I+LDLGL D+ G +
Sbjct: 7   RILVVDDEPAIRKLLRVGLTSEGYAVLEAINARDAISQVAEKRPDLILLDLGLPDMAGHD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           +L   R   +  P+ ILS  +     V+ L+ GADDY++KPF  +EL AR+R  +R    
Sbjct: 67  LLAKWRSDALELPIIILSSRTDETGIVKALELGADDYVTKPFGMKELAARMRVALRHRLQ 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +   + +  TGDLSV+L  + V+V    + L+ KEY ++ +L       +T +  LN ++
Sbjct: 127 QQGERPIFKTGDLSVDLVKRIVKVADKEVKLSPKEYDILRILVQYAGRVITHQHLLNKIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           DG  + +   + V++ +LR+K+        YI T  G GY LRE  +
Sbjct: 187 DGSTDVQ--YLRVYVRQLRQKIERTPEQPQYITTETGVGYRLREAEQ 231


>gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
 gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str.
           C58]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD    + +   L S    V     G + +       +D  I+D  +  + G 
Sbjct: 1   MKILLVEDDNTTGNYVTKGLASAGHIVDWVKDGREALAAGLDGGYDVAIVDRMIPGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++++LR A I  P+  L+ MS ++D+V GL++G DDY+ KPF   EL ARI A+VRR  
Sbjct: 61  NLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVRRPP 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               ++ +  GDL +NL  +T    G RI L  +E+ ++ELL   +   LTK MFL  ++
Sbjct: 121 ITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   +P+  +++  I +LR K+         + TV   GY L
Sbjct: 181 NFNFDPQSSVVETHISRLRAKIDKPFDQP-LLHTVKNTGYTL 221


>gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family
           [Variovorax paradoxus EPS]
 gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 219

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/220 (35%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++  +L++E + V     GE      +  ++D ++LDLG+    G 
Sbjct: 1   MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LR  K   PV I +   S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+ 
Sbjct: 61  EVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     +S+N   + V V G  + L+ +E+ +IE L  R    L++      LY 
Sbjct: 121 GRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +DE     ++V++  LRKKL     G  +I  V G GY+
Sbjct: 181 WKDEISSNAVEVYVHGLRKKL-----GAEFIRNVRGVGYM 215


>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
 gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
           [Paenibacillus polymyxa SC2]
          Length = 219

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/217 (29%), Positives = 116/217 (53%), Gaps = 2/217 (0%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L +D+  +   +EL L +E + V   + G D ++L + +     +LD+ + ++ GFEV 
Sbjct: 1   MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPEMNGFEVC 60

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA 123
           ++L+  + +  V +L+    ++D+V+GL+ GADDYI KPF+  EL+ARI A +R      
Sbjct: 61  QSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQFPDL 120

Query: 124 QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRD 183
              +V G   V+   K +  Q   + L+  EY++++ L L     L+K   L+ ++    
Sbjct: 121 LGEVVHGPFQVDDRRKEIRYQSQVLELSPTEYELLKFLVLNHGIVLSKSRILDRVWGYDF 180

Query: 184 EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             E  I++V+I  LR+KL +       I T+ G GY 
Sbjct: 181 GGEDNIVEVYIRSLREKLKD--KEHRVIRTLRGVGYR 215


>gi|219854871|ref|YP_002471993.1| hypothetical protein CKR_1528 [Clostridium kluyveri NBRC 12016]
 gi|219568595|dbj|BAH06579.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 236

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDKALA  IE  L  E ++V       + +E      FD ++LD+ L D  G++
Sbjct: 8   KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + +R  K   PV  L+      + V GL  GADDYI+KPF  +E V+RI+AI+RR  S
Sbjct: 68  VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +    D+ +N +      +GH + L+ +EY+++ L        +++E  L++L 
Sbjct: 127 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 186

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           DG  +  +   + V+I ++R+K+   +    YI+T  G GY      + E
Sbjct: 187 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWDIKVERE 236


>gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555]
 gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDDKALA  IE  L  E ++V       + +E      FD ++LD+ L D  G++
Sbjct: 3   KILLLEDDKALALGIEFTLMDEGYDVVKCSYAREAVEAFNSEVFDILVLDIMLPDGNGYD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           V + +R  K   PV  L+      + V GL  GADDYI+KPF  +E V+RI+AI+RR  S
Sbjct: 63  VCKYVR-KKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +   +    D+ +N +      +GH + L+ +EY+++ L        +++E  L++L 
Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
           DG  +  +   + V+I ++R+K+   +    YI+T  G GY      + E
Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWDIKVERE 231


>gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum
           STM815]
 gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family
           [Burkholderia phymatum STM815]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 7/236 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +   L  +   V V           +    D I+LDL +  + G  
Sbjct: 4   QILVVDDDVELRDLLRDYLARQGIEVSVLHDASSLERRIERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            LR LR +    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR + 
Sbjct: 64  ALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRKT 123

Query: 121 ------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    +     G  +++  ++T+  +G  + L+G E+ ++++       TLT+E  
Sbjct: 124 VPSAAAPEQREPFSFGRFTLDFQSRTLHQEGKPLTLSGSEFALLKIFVNHPMRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETC 230
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +    
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSVPRFIQTVRGRGYVFVPDGEQHAS 239


>gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 257

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 33/247 (13%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+EDD+ +  S+ + L+   + V     G  G+ L +    D ++LD+ L  + G  +
Sbjct: 16  VLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGHDLLLLDVMLPGLDGIGL 75

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R   +  P+ ++S      D + GL++GADDY+ KP +   LVARIR+++RR+   
Sbjct: 76  CRRIRETSMD-PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRRATYP 134

Query: 120 ------------------------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEY 155
                                   R H  + +  GDL+++     V + G  I L   E 
Sbjct: 135 PAGGSGDPATSSPAGASAGAQPGPRHHHGARLRFGDLAIDTGGLEVFLAGEPIALAPTEL 194

Query: 156 QMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVW 215
           +++   +      L +E  L  ++D   + + +++D+ + +LRKK+     G   IETV 
Sbjct: 195 RLLLEFAAHPGIVLDRETLLRDVWDYDWDGDTRVVDLCVQRLRKKI-----GAGRIETVR 249

Query: 216 GRGYVLR 222
           G GY LR
Sbjct: 250 GFGYKLR 256


>gi|297620372|ref|YP_003708509.1| two-component response regulator phoB [Waddlia chondrophila WSU
           86-1044]
 gi|297375673|gb|ADI37503.1| two-component response regulator phoB [Waddlia chondrophila WSU
           86-1044]
          Length = 231

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/230 (31%), Positives = 121/230 (52%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLIED++ +A  I+L      + ++V   G +G+   +  + D +ILD+ L    G +
Sbjct: 5   RLLLIEDEEDIAALIKLQADISGYKLHVEVDGLNGLLAIEREKPDLVILDIMLPGQSGLD 64

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V R L+        PV ++S  S   D V GL+ GADDY++KPF+ + L +RIRA++RR 
Sbjct: 65  VCRKLKNNPETKDIPVIMISAKSEELDVVLGLELGADDYVTKPFSPKILFSRIRAVLRRG 124

Query: 120 RGHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +       +I  G  +++ ++  V     ++HLT  E+ +++ L       LT+   L+ 
Sbjct: 125 KEPEKGPKIIKFGHFALDTESYQVRKHDKQLHLTLSEFGILKRLVSNPGKVLTRNQLLDD 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           + +       + IDV I  LRKKL       ++IETV G GY  +E  +D
Sbjct: 185 VQNEEAFIVDRNIDVHIASLRKKLGPNF---HWIETVRGVGYRFKEEEED 231


>gi|222106298|ref|YP_002547089.1| two component response regulator [Agrobacterium vitis S4]
 gi|221737477|gb|ACM38373.1| two component response regulator [Agrobacterium vitis S4]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ +A  +   L  +   V V   G       +  EFD ++LD+ L    GF 
Sbjct: 6   KILIVEDDEQIAGMVRDSLNEQGMLVEVAADGAAMDAKMRALEFDLVVLDVMLPGEDGFS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +    P+ +L+ +SS  D+V GL+ GADDY++KPF   EL ARI+ ++RRSR 
Sbjct: 66  ICRRLRGSG-DIPILMLTSVSSDIDRVVGLEIGADDYVTKPFVLRELTARIKGLLRRSRV 124

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            +Q       S        V+   + +      R+ +T  E+ ++          LT+E 
Sbjct: 125 TSQRPDSLRKSFFRFDGWQVDPARRQLHDPSHARVAMTTHEFDLLLAFCQNPGRVLTREQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            L+  + G   P  + IDV I +LR+K+         ++TV   GYV     ++
Sbjct: 185 LLSATHAGLAGPIERSIDVHISRLRQKIEKDPRDPALLKTVRLGGYVFTATVEE 238


>gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator
           [Bradyrhizobium sp. ORS278]
 gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR
           family) [Bradyrhizobium sp. ORS278]
          Length = 246

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+     I   L++   NV     G +   +   +  D +ILD+ L    G  
Sbjct: 7   HILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR      P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR   
Sbjct: 67  LCRKLRAES-QVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQAA 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S     + +      ++   + +   +G R+ +T  E+ ++     R    L+++ 
Sbjct: 126 AITASATEGATALSFLGWKIDFRLRELRNPEGARVAMTSAEFDLLRTFCERPGRVLSRDS 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+           + IDV + ++R+K+         I+TV   GY+     +
Sbjct: 186 LLDLTQGRSAGSFERSIDVLVSRIRRKIEPDPQEATMIKTVRSGGYMFTPVVE 238


>gi|187479256|ref|YP_787281.1| osmolarity two component response regulator [Bordetella avium 197N]
 gi|115423843|emb|CAJ50394.1| osmolarity two component response regulator [Bordetella avium 197N]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD AL   +   L    ++  +     D       Y  D ++LD  L    G +
Sbjct: 7   KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLASRITRYAPDLLVLDRMLPGGDGAD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV +L+      D++ GL++GADDY+ KPF+  EL+ARI A++RR RG
Sbjct: 67  ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRG 126

Query: 122 HA----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +       +  G    +   + +   G  + LTG E  ++E L       L++E  L  
Sbjct: 127 PSALIKDHPVSFGPFVFDPATRQLLRDGIVVKLTGGEINLLEALVRNAGKPLSRERLLAL 186

Query: 178 LYDGRD-EPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D    E   + ID+ + +LR+ +        +I+TVWG GY  
Sbjct: 187 ARDDDAGERNDRAIDIAVLRLRRAIEADPKQPRWIQTVWGIGYRF 231


>gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus
           metalliredigens QYMF]
 gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family
           [Alkaliphilus metalliredigens QYMF]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED+  LA ++  MLK  N+ V +   GE G++      +D I+LD+ L  + G 
Sbjct: 1   MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R   I+TPV +L+    I DKV GL SGADDY++KPF  EEL+ARIRAI RR  
Sbjct: 61  SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                  +  GD+ +N     +  +   + LT KE  ++  L LR N   +KE+ +  ++
Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + E   ++V+I  LRKKL      K  I T+ G GY+L 
Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTS-KVVINTLRGVGYILE 222


>gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIED+  +   I   LK  +F++     G+  +EL    +FD +I+D  L  + G +
Sbjct: 3   RILLIEDEDNIRKIIAYDLKKADFDIVECADGKTAVELAMKEDFDVLIIDWMLPHVSGID 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ LR   I     +L+      D +   + G DDYI+KPF+  EL+AR+ A ++R   
Sbjct: 63  IVKKLRNEHIDAIFIMLTARDDETDILYAFEQGVDDYITKPFSPRELLARVNAHLKRQSR 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  GDLS+++  +   +  H + LT KE+ ++E     K+  L+++  LN ++  
Sbjct: 123 KQEKRLAVGDLSMDMKRREAYIGDHMMTLTKKEFDLLEYFIQNKDIVLSRDSILNDIWGF 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             + + +I+DV + KLR KL+     + +I++  G GY+L E
Sbjct: 183 DYDGDTRIVDVHVFKLRNKLN---ASRVHIKSSRGVGYLLEE 221


>gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
 gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family
           [Meiothermus ruber DSM 1279]
          Length = 219

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 127/225 (56%), Gaps = 8/225 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR+L++ED+ +LA +++  L ++ F V +     +   L     FD ++ D+ L + P  
Sbjct: 1   MRLLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+ +ALR +    P+  L+   ++ D+VRGL+ G DDY+ KPF   ELVAR++A+ RR
Sbjct: 61  GFELAQALRESGFHQPILFLTAREALPDRVRGLEWG-DDYLPKPFALAELVARLKALGRR 119

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                Q L ++  + + L+ + V  QG  + LT KEY ++ELL+L K    T+E  L  +
Sbjct: 120 GEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERI 179

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +    E +  +IDV++  LRK+L         IETV G GY L E
Sbjct: 180 WGPGFEADSNLIDVYVKNLRKRLGED-----VIETVRGVGYRLGE 219


>gi|284044693|ref|YP_003395033.1| two component transcriptional regulator [Conexibacter woesei DSM
           14684]
 gi|283948914|gb|ADB51658.1| two component transcriptional regulator, winged helix family
           [Conexibacter woesei DSM 14684]
          Length = 229

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/221 (33%), Positives = 123/221 (55%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A  ++  L+ E ++V     G   ++    +  D +ILDLGL  + G +
Sbjct: 9   RVLVVEDDDEIAQVLQRSLRMEGYDVRTAGDGVSALDEAHSFLPDLVILDLGLPKLDGID 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR      P+ +L+   ++E +V GL +GADDY+ KPF ++EL+AR+RA++RR   
Sbjct: 69  VARTLRR-GDDVPILMLTARDALESRVEGLDAGADDYLVKPFERQELLARLRALLRRRPP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              + +V GDL +N D   V      I LT +E++++E L   +   ++++  L+ ++  
Sbjct: 128 RGSAPLVVGDLRLNPDTHEVHRGERSIELTQREFELLEYLMRNERIVISRQRLLDEVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   I+VF+  LR+KL    G    + T+ G GYVLR
Sbjct: 188 DPFSTTNTIEVFVSNLRRKLEAD-GEPRLLHTIRGAGYVLR 227


>gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 221

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 123/222 (55%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   + L L+     V V   GE  +E  +   +D +++D+ L  + G 
Sbjct: 1   MRVLIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVLPGMSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R    + P+ +L+   ++ D+V GL +GADDY+ KPF  EEL ARIRAI RR  
Sbjct: 61  DLCREVRRFS-NVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +       G+ +V+LDA  V  +G  + LT +EY ++  L    N T +++  L  ++ 
Sbjct: 120 VNGAP-FRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   +  ++DV+I  LR+KL      + YI+TV G+GY L 
Sbjct: 179 FQAPGDTNVVDVYIGYLRQKLDP---ERRYIKTVRGQGYRLE 217


>gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator
           [Stenotrophomonas maltophilia R551-3]
 gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family
           [Stenotrophomonas maltophilia R551-3]
          Length = 227

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L IEDD   A  I   L+S  F+V +   G +G+ L +  ++  I LD  L  I G  
Sbjct: 3   RVLTIEDDLVTAEEIATELRSHGFDVDLASDGSNGLALARAGDYAVITLDRMLPGIDGLA 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--S 119
           ++  LR   I+TPV ++S +S ++++VRGL++G DDY++KPF  +E+ AR+  ++RR   
Sbjct: 63  LVTTLRREGITTPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGP 122

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   +++  GDL ++L  ++    G  I L   E++++E L       +T+ M    ++
Sbjct: 123 TGAIDNVLRAGDLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVW 182

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               +P   +IDV I ++RK++    G    I TV G GYV 
Sbjct: 183 GYHFDPGTNLIDVHIGRVRKRIEQ-PGRPQPIMTVRGTGYVF 223


>gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
 gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family
           [Mucilaginibacter paludis DSM 18603]
          Length = 235

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL ED++ L  +I+L L+ E + V   + G+  ++  K   F+ +ILD+ + +I GF 
Sbjct: 6   RILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDGFV 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R+     P+  L+  ++ EDKV GL+ GADDY++KPFN EEL+ R+  +V+RS  
Sbjct: 66  VAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKRSLK 125

Query: 122 HAQ----SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +    GD +++ ++   V   G    LT KE  +++LL  R+N  +++E  L 
Sbjct: 126 GDALKEFNSYKIGDKTIHFNSFELVNADGSITPLTKKETMLLKLLIERRNDAVSREQILE 185

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++    P  + ID FI   RK          Y  ++ G GY   +N
Sbjct: 186 TVWNYDVYPSTRTIDNFILTFRKYFEPDPKSPVYFHSIRGVGYKFTDN 233


>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 225

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  + +LR K+ +       I TV G GY L   
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224


>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
 gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. AA4]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  +  ++ + L +  + V     G   ++     + D ++LDLGL D+ G EV
Sbjct: 9   VLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGTEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +  LR    + P+ +LS      DKV+ L +GADDY++KPF  +EL+AR+RA VRRS   
Sbjct: 69  IAGLR-GWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRSSVA 127

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A++++ TG  +++L AK V  +G  +HLT  E+ ++ELL   +   + ++  L+ +
Sbjct: 128 GTDGAEAVVDTGSFTIDLAAKKVLREGREVHLTKTEWGVLELLVRNRGRLVAQKQLLHEV 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +    E E   + V++ +LR+KL        ++ T  G GY   
Sbjct: 188 WGPSYETESHYLRVYLAQLRRKLEPEPSRPRHLLTEPGMGYRFE 231


>gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L+ E F      LG   +E  +    D IILD+GL DI GFE
Sbjct: 3   HILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR++AI++R   
Sbjct: 63  TCKQLRRFS-EVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 V     ++ +   +  +G  + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 122 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDALGVM 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   A     I+T  G GY
Sbjct: 182 ADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 219


>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
 gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
          Length = 238

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LLI+DD AL   +   L  E + V     GE G+       +   +LD+ L  + GFE
Sbjct: 3   RLLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPRLNGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+ +R    S PV +L+      D+V GL+ GADDY+ KPFN  ELVARI+AI+RR+  
Sbjct: 63  VLKRIRQES-SLPVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILRRTDP 121

Query: 122 HAQS-----LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            ++      ++   DLS+N   + V   G  + LT  E+ +++ L+    T + ++    
Sbjct: 122 DSRPASGARILEIDDLSINPANREVRRGGVPVELTAAEFLLLKTLAEAPGTLVGRDELTR 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +   R  P  + ID+ +  LR+KL     G   I TV G GY
Sbjct: 182 IVLHRRLTPFDRAIDMHVSNLRRKLGEKPDGSPRIRTVRGSGY 224


>gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum
           ATCC 33693]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L LK + + V     GE+G+EL     +D ++LDL L    G E
Sbjct: 12  KILIIEDDKNIQRLLSLELKHKGYIVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR-RSR 120
           + +  R     TP+ I +   ++ DKV  L  GA+DYI KPF  EEL+ARIR + R R  
Sbjct: 72  LCQEFRKL-TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRET 130

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +    ++ ++L  K V +    I LT  E+ ++E     +  + ++E  L  ++ 
Sbjct: 131 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 190

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 191 YDFDGEEKIVDVYINSLRKKMDT---ESKYIHTIRGFGYIFQ 229


>gi|225389850|ref|ZP_03759574.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme
           DSM 15981]
 gi|225044097|gb|EEG54343.1| hypothetical protein CLOSTASPAR_03599 [Clostridium asparagiforme
           DSM 15981]
          Length = 229

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 59/223 (26%), Positives = 110/223 (49%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +DD+ +       L+S+ +  +    G D  +      FD I+LD+ +  + GF 
Sbjct: 5   RILIADDDQEILTITSRSLQSQGYLTFECRNGIDAYQAIVSQPFDLILLDINMEGLDGFR 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++ +R  +I TP+ I++G +   ++V GL  GADDYI KPF    L AR++A++RR + 
Sbjct: 65  IIQKVREQQIFTPILIITGNAEEYNEVFGLSIGADDYIIKPFRPSALCARVKALLRRQQQ 124

Query: 122 HAQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
             +    +  G   ++ ++ +       + LT KE  +++      N   +KE     ++
Sbjct: 125 FQKDNATLKAGPFQMDRESYSFYKNNVELVLTPKERLLMQHFLHNVNHVFSKEQLYTAVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +  +   + V I  LR+K+ +      Y+ TV+G GY   
Sbjct: 185 K-DNCVDDNTVMVTIRNLRQKIEDDPKSPKYLLTVYGIGYKFV 226


>gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
 gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
          Length = 226

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/225 (28%), Positives = 113/225 (50%), Gaps = 3/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+ EDD  +   +  + + E + +     G + ++L    + D I LD+ + +I G+
Sbjct: 1   MKVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGY 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +V R +R      PV  LS  S  EDK++G + GADDYI+KPF  +E++AR+RA+ RR  
Sbjct: 61  DVCREIRKVDSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVTRRCL 120

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            S    Q      DL++N    +   + H I L  ++ +++E L    N  ++++     
Sbjct: 121 KSTSTTQRTFSMADLTINPKGLSCTREEHVIELGLRDIKILEHLYKHANEAVSRQQLFQS 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++       + ID  I +LRK +         I+T  G GY+ +
Sbjct: 181 CWEMEFTGNTRSIDQKISQLRKLVELDPQSPQIIQTAHGVGYIYK 225


>gi|222056071|ref|YP_002538433.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
 gi|221565360|gb|ACM21332.1| two component transcriptional regulator, winged helix family
           [Geobacter sp. FRC-32]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 116/222 (52%), Gaps = 2/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+ A+   ++  L +  F+++  D G   +        D I+LDLGL D+ G E
Sbjct: 10  RILIVDDEPAIQRFLQTALDTGEFSLHKADDGHSALAAAVATRPDIILLDLGLPDMDGVE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V+R +R      P+ +LS     +DKV+ L +GADDY++KPF   EL+AR+R  +RRS +
Sbjct: 70  VIRRVREWS-QVPIIVLSVREREDDKVKALDAGADDYVTKPFGIPELLARMRVALRRSLQ 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +  +G L V+L  + V+VQ   + +T  EY ++ LL       LT    L  ++ 
Sbjct: 129 EVVEPVFRSGGLEVDLHLRKVKVQEEDVQVTPTEYDLLRLLVTHAGRVLTHAHLLKQIWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                +  ++ V I  LR K+        YI T  G GY L+
Sbjct: 189 VGYVEQPHVLRVNISNLRHKIEKDPSRPRYIITEPGVGYRLK 230


>gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3]
 gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3]
          Length = 241

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/236 (27%), Positives = 118/236 (50%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DDK +   +   L   NF+V     G +        E D IILD+ L    GF 
Sbjct: 6   QVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIEMDAHLAQTEPDLIILDVMLPGDDGFI 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   +  P+ +L+  S   D++ GL+ GADDYI+KPF+  EL+ARI+A++RR+  
Sbjct: 66  LCQRIRQTSM-VPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALLRRNHF 124

Query: 122 HAQS--------LIVTGDLSVNLDAK-TVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
             +           +  +  ++   +  +   G  + LTG +YQ++ L     +  ++++
Sbjct: 125 VNEQSKKVVKDRYFLFANWKLDTQNQNLLNAAGEVMPLTGADYQLLSLFLDNLDNPISRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                L+        + IDV + +LR+ L + A     I+TV G+GY+   + + E
Sbjct: 185 EICRALHGRNAFANERGIDVHLSRLRQCLGDDAKFPKIIKTVRGKGYLFIASVRTE 240


>gi|53718811|ref|YP_107797.1| two-component system, regulatory protein KdpE [Burkholderia
           pseudomallei K96243]
 gi|76811337|ref|YP_332807.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
           1710b]
 gi|167718797|ref|ZP_02402033.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei DM98]
 gi|167814991|ref|ZP_02446671.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 91]
 gi|167823404|ref|ZP_02454875.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 9]
 gi|167844953|ref|ZP_02470461.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei B7210]
 gi|167893496|ref|ZP_02480898.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 7894]
 gi|167901949|ref|ZP_02489154.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei NCTC 13177]
 gi|167910181|ref|ZP_02497272.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 112]
 gi|167918213|ref|ZP_02505304.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei BCC215]
 gi|254175503|ref|ZP_04882163.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           10399]
 gi|254207477|ref|ZP_04913827.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
 gi|284159939|ref|YP_001058295.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 668]
 gi|288553010|ref|ZP_03450883.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 576]
 gi|52209225|emb|CAH35170.1| two-component system, regulatory protein KdpE [Burkholderia
           pseudomallei K96243]
 gi|76580790|gb|ABA50265.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
           1710b]
 gi|147751371|gb|EDK58438.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
 gi|160696547|gb|EDP86517.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
           10399]
 gi|283775091|gb|ABN83417.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 668]
 gi|288279717|gb|EEC36697.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           pseudomallei 576]
          Length = 232

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 68  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQA 126

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVRFGDVSVDLALRRVWRGGEVVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 229


>gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
 gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA]
          Length = 227

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDDK +   + L LK + + V     GE+G+EL     +D ++LDL L    G E
Sbjct: 6   KILIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + +  R     TP+ I +   ++ DKV  L  GA+DYI KPF  EEL+ARIR + R    
Sbjct: 66  LCQEFRKL-TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNREN 124

Query: 122 HAQSLIVT-GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   I    ++ ++L  K V +    I LT  E+ ++E     +  + ++E  L  ++ 
Sbjct: 125 SSDKQIYFENEIKLDLTTKKVFINQKEISLTKTEFLILEYFMKNRAISCSREKILTGVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E KI+DV+I  LRKK+        YI T+ G GY+ +
Sbjct: 185 YDFDGEEKIVDVYINSLRKKMDT---ESKYIHTIRGFGYIFQ 223


>gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 242

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+  ILLIEDD  +   + L L ++ + +   + G++G+        D I+LDLGL D+ 
Sbjct: 1   MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFARVPDLILLDLGLPDMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G ++++ +R      PV +LS      +K+  L +GADDY++KPF   EL+ARIR ++RR
Sbjct: 61  GIDIIKQIREWS-QVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVLRR 119

Query: 119 S----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +     G +++ +  G ++++ + + +      I L+  EY+++  L   ++  +T    
Sbjct: 120 AVPTEEGASETTVRFGKITIDFERRQIWRDQEEIRLSPIEYKLLGTLIKYRDKVVTHRQL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++      +   + VFI  LR+KL +      ++ T  G GY L+
Sbjct: 180 LKEVWGPGATAQNIYLRVFILNLRRKLEDDPARPVFLITEPGVGYRLK 227


>gi|167585551|ref|ZP_02377939.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 242

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKNGVEADTALSMQTFDLLILDLGLPKLSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCLEK 220


>gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter
           salexigens DSM 3043]
 gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family
           [Chromohalobacter salexigens DSM 3043]
          Length = 233

 Score =  245 bits (628), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 113/221 (51%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+ +A  I   L+S  + V             +    D ++LD GL D  G 
Sbjct: 1   MHVLLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRDGDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++   R A    PV +L+   +I D++ GL +GADDY+ KPF+ +ELVAR+ A++RR+ 
Sbjct: 61  TLVEEWREAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A   IV G L  +  A+ V  +G  + L+ +E  ++E       + L+     + LY 
Sbjct: 121 GRAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDSLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+K+         IETV G GY L
Sbjct: 181 LDDEVESNALNVHIHHLRRKV-----APAVIETVRGLGYRL 216


>gi|322831824|ref|YP_004211851.1| transcriptional regulator [Rahnella sp. Y9602]
 gi|321167025|gb|ADW72724.1| two component transcriptional regulator, winged helix family
           [Rahnella sp. Y9602]
          Length = 227

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/228 (34%), Positives = 120/228 (52%), Gaps = 7/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL++DD  L   +   L +E F+  +   G+ G+E     E+ A+ILD+ L D+ G 
Sbjct: 1   MKILLVDDDLELGTMLSEYLIAEGFDASLVLTGKAGVEGAMSGEYTAMILDIMLPDMSGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR +R      P+ +L+      D+V GL+ GADDY+ KP    ELVAR+RA++RR  
Sbjct: 61  DVLRQVR-KNSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVE 119

Query: 121 GHAQSL-----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +S      +  GDL++N   ++ E +G    LT  E+ ++ELL       ++K+   
Sbjct: 120 EQQESHSDNSSVNYGDLTLNPATRSSEWRGVPFDLTASEFNLLELLLRSPERVVSKDELS 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYVLR 222
                   E   + IDV I  +R+KL +  GG    IETV   GY +R
Sbjct: 180 EKGLGRPREAYDRSIDVHISNIRQKLGSLEGGDILTIETVRSIGYRIR 227


>gi|304311047|ref|YP_003810645.1| Response regulator receiver [gamma proteobacterium HdN1]
 gi|301796780|emb|CBL44992.1| Response regulator receiver [gamma proteobacterium HdN1]
          Length = 246

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R++++EDD  LA      L +    V +   G   I      + D ++LDL L    G E
Sbjct: 12  RVMIVEDDDRLAQLTADYLLNNGMAVEIIRDGITAISAIVEKQPDIVVLDLMLPGADGLE 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R  +   P+ +L+  +   D+V GL+ GADDY+ KP     L+ARIRA++RR+ G
Sbjct: 72  VCKAVR-DRYKKPILMLTARTDDVDQVLGLEMGADDYVPKPAKPRVLLARIRALLRRADG 130

Query: 122 HAQS-----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                           +  GDL ++  A+ V ++G  + LT  EY ++ LL+    T L+
Sbjct: 131 QDNDDAGRGKGDDGTRLEFGDLIIDNGAREVWLRGETVDLTSAEYDLLWLLASNAGTILS 190

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +E     L   + + + + IDV + ++R K+ +       I+TV  +GY+  + 
Sbjct: 191 REEIFERLRGIQYDGQDRSIDVRVSRIRPKVGDDPMNPRRIKTVRSKGYLFVKE 244


>gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
 gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family
           [Olsenella uli DSM 7084]
          Length = 231

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 108/231 (46%), Gaps = 4/231 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D + +A  +  +L +E  +      GE  +E      +  +ILD+ +  + G+E
Sbjct: 4   HVLVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMPGLDGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R    + PV  LS  S   D VRG    ADDYI+KPF   EL+AR++A +RR+  
Sbjct: 64  VCRRIRRTS-AVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARLRRA-A 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               ++    +++        +    + LT KE+ ++ELL       +   M    ++  
Sbjct: 122 RPDGILCAQGIALEPLTHRATLHDLELSLTPKEFGILELLLRNAGRPVPNRMIYEEVWRD 181

Query: 182 RDEPE-VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
              P     + V I  LR KL+      + I+TVWG GY    + + E  E
Sbjct: 182 AYLPSANNTVMVHIRNLRHKLAGIDSSAHPIQTVWGVGYR-VADGRLEAGE 231


>gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 220

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/222 (38%), Positives = 133/222 (59%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+A+   I + L +E + +   + G   +   +   FD ++LDLGL  + GF
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR  +++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+
Sbjct: 61  DLLRQLRAEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N LY 
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+ E   ++V I  LRKKLS        I TV G GY+L 
Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLE 217


>gi|284029920|ref|YP_003379851.1| winged helix family two component transcriptional regulator
           [Kribbella flavida DSM 17836]
 gi|283809213|gb|ADB31052.1| two component transcriptional regulator, winged helix family
           [Kribbella flavida DSM 17836]
          Length = 244

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +   L+   F V       + +        D ++LD+ L D+ GFE
Sbjct: 17  RLLVVDDEATVRELLAATLRFAGFQVTSAATATEAVAAATAEPPDLVLLDVMLPDLDGFE 76

Query: 62  VLRALR-----VAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           V+R LR           PV  L+      DKV GL  GADDY++KPF+ EEL+ARIRAI+
Sbjct: 77  VVRRLRERRVGNNSGPVPVLFLTARDGQADKVTGLSLGADDYVTKPFDLEELIARIRAIL 136

Query: 117 RRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           RR+ GH   ++  G L+++     V  +G  + ++  E++++  L       ++K   L+
Sbjct: 137 RRTAGHHTDVLTVGPLTLDAQGHQVTREGQPVKVSPTEFRLLRYLMENAGRVVSKAQILD 196

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++      ++ I+D +I  LR+K+   AG    I TV G GYV+RE 
Sbjct: 197 RVWQYDFGGDMSIVDTYISYLRRKV--DAGEPKLIHTVHGVGYVIREP 242


>gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
 gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
          Length = 236

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 9/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   ++     + + V V   G       +    D IILDL L    G  
Sbjct: 3   RLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLIILDLMLPGDNGLT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR    +TPV +L+ M  + D+V GL+ GADDY+SKPF+  EL+AR+RA++RR   
Sbjct: 63  LCQRLRQQH-ATPVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVLRRAGE 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S    + LI   D  ++L  + +       I L+  E+ ++ +        LT+E 
Sbjct: 122 NRPVSADVPRPLIKFADWQLDLTRRELRSPDQVMIPLSAGEFDLLLVFVEHPQRILTREQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            L+       +   + IDV + +LR+KL         I TV   GY+   + 
Sbjct: 182 LLDLARGQAHDAFDRSIDVQVSRLRRKLEFDTKRPAMIRTVRNGGYLFTPSV 233


>gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp.
           holarctica URFT1]
 gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica LVS]
 gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 181 EIYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 219


>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 218

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 126/222 (56%), Gaps = 7/222 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD ++A  I+L L    +     + G    E  +  +FD I+LD+ +  + GF+
Sbjct: 4   KVLIVEDDLSIARLIKLNLNLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIPGMDGFK 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R   ++ PV  L+  +S  DKV GL+ GADDY+ KPF   EL+ARI A++RR  G
Sbjct: 64  LMEKIR--PLNIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRY-G 120

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+   +++VN + + VE+ G+ ++LT KEY +   L   KN  L++E  +  ++  
Sbjct: 121 KVHKLLTYKNITVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
               E + +D+ I  LRKKL    G +  I+TV+  GY L +
Sbjct: 181 DYYGETRTVDMHINALRKKL----GLQEEIKTVYKIGYRLED 218


>gi|317471643|ref|ZP_07930986.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
 gi|316900868|gb|EFV22839.1| response regulator receiver domain-containing protein [Anaerostipes
           sp. 3_2_56FAA]
          Length = 226

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ LA      ++ + F     + GE+  E    +    IILD+ L  + GF+ 
Sbjct: 6   ILIVEDDRDLAEIAIDYMEEKGFGCIRAESGEEAFEALYQHPIRLIILDINLPGMNGFQF 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +  LR      PV  +S  +S  DKV+GL  G DDY+SKP++  EL +R+ A++RR+ G+
Sbjct: 66  IEKLRNE-TELPVIFISARTSDTDKVKGLMLGGDDYLSKPYSLAELYSRVLALLRRTYGY 124

Query: 123 AQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
           +    +   D+ ++   K+V      + +T K Y+++  L+      LTKE     ++  
Sbjct: 125 SVLKPLCFSDIIIDQKRKSVTKADSPLEMTSKMYELLAYLAAHPGEILTKERLFTEIWGY 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             E    ++ V I  LR+K+        +I TV+G+GY   E
Sbjct: 185 GSESTPSVLSVHIRWLREKIERDPSHPEHILTVYGKGYRFEE 226


>gi|295398503|ref|ZP_06808537.1| response regulator [Aerococcus viridans ATCC 11563]
 gi|294973226|gb|EFG49019.1| response regulator [Aerococcus viridans ATCC 11563]
          Length = 241

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 19/242 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSE-NFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTDI 57
           M IL+IED++++A  + +  + + ++       GE+G +  L      + +ILDL L   
Sbjct: 1   MNILMIEDNESVAEMMSMFFEQQKDWEATFIQDGEEGWQYYLANEETIEMVILDLNLPSK 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G ++ R +R      P+ +L+   +  ++V GL  GADDY+ KPF+    +AR+RA+ R
Sbjct: 61  DGIQICRDIRQQNKQVPIIMLTARDAESEQVLGLGLGADDYVVKPFDPITFMARMRALYR 120

Query: 118 RSRGHAQS-------------LIVTGDLSVNLDAKTVEVQGHRI-HLTGKEYQMIELLSL 163
           RS+    +              I T  + +N   +    +   I HLT KE+++++LL+ 
Sbjct: 121 RSQLTESAVEAAEEKGNADQFDIQTEFIRINSQNREAFYKDQLIQHLTPKEFEILQLLAG 180

Query: 164 RKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           R     T+E  L  L++     + + +D  I KLR+K+     G   I+TVWG GY   E
Sbjct: 181 RPKQVFTREHLLTTLWEDPFYGDERTVDAHIKKLRQKMEEY--GPQLIQTVWGVGYKFDE 238

Query: 224 NA 225
             
Sbjct: 239 TG 240


>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
           opacus B4]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 114/226 (50%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L++E F+V     G   + +C     D ++LD+ L    G E
Sbjct: 5   RVLVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVMLPGFDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+  +   D + GL  GADDY+SKPF+   LVAR+ A++RR+  
Sbjct: 65  VCRRV-QASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADR 123

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +++      +  GDL V+L  + V      IHLT  E+ ++   + R    + +E  L
Sbjct: 124 AHEAVPAERGGLAVGDLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIARESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 184 AEVWGWGDGAGSRTVDSHVKALRRKL-----GGDLIRTVHGVGYAL 224


>gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
 gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7424]
          Length = 597

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/228 (32%), Positives = 123/228 (53%), Gaps = 2/228 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILLIEDD  ++  I   L +  + V +   GE G+E     ++  I+LD+ +  + G 
Sbjct: 1   MKILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   LR +   TP+ +L+  +S ED + GL +GADDY++KPF+ E+L+ARIRA++RR  
Sbjct: 61  SLCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S++  G L  +     V  Q   I+L+ KEY ++EL         ++   ++ L+
Sbjct: 121 IKRFPSILTWGALQFDPILIKVTYQDQVINLSPKEYSILELFLRHPQRIFSRSDIIDRLW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
              + P    +   I  LR+KL+ A   +  IET++  GY L+ +A D
Sbjct: 181 MIDESPTEAAVTNLIKDLRRKLTAAGMKEELIETIYKLGYRLK-SAPD 227



 Score = 93.4 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++++++DD     ++  +L+     V      +   ++      D ++LDL +    G E
Sbjct: 477 KVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNGLE 536

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + R +R        P+ +++  +      +   +GADD+ISKP    E++AR+   + RS
Sbjct: 537 LCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIERS 596

Query: 120 R 120
           R
Sbjct: 597 R 597



 Score = 41.8 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 37  IELCKFYEFDAIILDLG--LTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSG 94
            +  K    D I+L L   LT   G  +L+ L+    S PV + +   ++ ++V  ++SG
Sbjct: 387 WQWLKQNTPDVIMLSLHRSLTQDSGLMLLQQLKKQFPSIPVLVTTEKDNLYERVAVVRSG 446

Query: 95  ADDYISKPFNKEE 107
            + YI +    EE
Sbjct: 447 GEGYILQTATTEE 459


>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
           MA-4680]
 gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
           avermitilis MA-4680]
          Length = 225

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|331268490|ref|YP_004394982.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
 gi|329125040|gb|AEB74985.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 120/227 (52%), Gaps = 7/227 (3%)

Query: 4   LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVL 63
           +L+EDD ALA  ++  LK ENFNV       +  E     E D ++LD+ L D  G++  
Sbjct: 1   MLVEDDMALAIGMDYTLKQENFNVIKAKNLREARENF-NEEMDLVLLDVMLPDGTGYDFC 59

Query: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR----S 119
             +R  K   P+  ++      + V GL+ G DDYI+KP   +E++ARI A++RR    +
Sbjct: 60  SEIRR-KSDIPIIFITACDEEANIVLGLEIGGDDYITKPIRIKEMLARINAVLRRKSTAN 118

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +   IV+GD+ V++    V      I LT  EY+++ +    KN  +T+   L  ++
Sbjct: 119 KEQSTKTIVSGDIVVDILKIKVYKNNEEIILTPAEYKLLVIFMKNKNNVVTRGTLLEKIW 178

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           D   +  +   ++V++ +LR+K+ + +    YIETV G GY  RE  
Sbjct: 179 DVDGEFVDSNTVNVYVKRLREKIEDDSKNPMYIETVRGAGYRWREKV 225


>gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
 gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
           14469]
          Length = 232

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/234 (31%), Positives = 122/234 (52%), Gaps = 12/234 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD+ +   ++  L    + V +   G +GI     +  D ++LD+ L  I GF 
Sbjct: 3   QILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVMLPKIDGFG 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           VL  +R      PV +L+ +   E ++RGL   ADDYI+KPF+ + L+ +I A++RR+ R
Sbjct: 63  VLELIRRES-EVPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLRRANR 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGH-----RIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              Q  IV  +L ++     V V           LT KE++++ +L + K   LT++  L
Sbjct: 122 DAGQEQIVYKNLRLDPAGHHVYVGQENGDITEPELTQKEFELLHVLLINKGIVLTRQKLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           N ++      E +I+D  I  LRKKL     G   I T+ G GY + +  K+++
Sbjct: 182 NLVWGEDYFGEERIVDTHIKNLRKKL-----GPGCISTIRGVGYRIDKENKNQS 230


>gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family
           [Xanthobacter autotrophicus Py2]
          Length = 255

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 18/242 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI++++D++AL  ++   L  + F V     G D   L      D I++D+ +    G  
Sbjct: 13  RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLT 72

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           + R +R A  +TP+ +L+    I D+V GL+ GADDY+ KPF+  EL ARIRA++RR   
Sbjct: 73  LARRIRSA-AATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTA 131

Query: 121 ---------------GHAQSLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLR 164
                               L+  G + ++++A   V   G R  LT  E+ ++ +    
Sbjct: 132 VPPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQN 191

Query: 165 KNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            N  LT++  L+  +D  +EP  + IDV + +LRKK+         I+TV G GY+    
Sbjct: 192 PNRVLTRDRLLDLAHDRDNEPFDRSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLFVPG 251

Query: 225 AK 226
            +
Sbjct: 252 PR 253


>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 247

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 120/225 (53%), Gaps = 8/225 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGI-ELCKFYEFDAIILDLGLTDIPGFE 61
           IL+I+DD  L   +   L    + V V + GE+G+ E      +D I+LD+ +  + GF+
Sbjct: 20  ILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMDGFD 79

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VL+ LR +  STPV +L+      D++ GL+ GADDY+ KPFN  ELVARI+AIVRR   
Sbjct: 80  VLKKLRSSH-STPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHNL 138

Query: 121 ----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
               G  +  +    + ++  ++  +V    + LT  E+ ++ LL L     +TKE    
Sbjct: 139 SSSGGAVEQDLFVNGILLSPSSQLAKVDDVELTLTTTEFLILRLLMLNAAQRVTKEEISL 198

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +     +   + ID+ +  LRKK+   A  +  I+T+ G GY+L
Sbjct: 199 KILGKPLQAFDRSIDMHVSNLRKKIGAVAVDEK-IKTIRGVGYML 242


>gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator
           [Methylobacterium nodulans ORS 2060]
 gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family
           [Methylobacterium nodulans ORS 2060]
          Length = 221

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD ALA  +   L+     V     G +   L     +  I+LD+GL  + GF
Sbjct: 1   MRVLVVEDDAALARGLVAALRLAGLAVDHEADGAEAARLALSEPYSLIVLDVGLPGLSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R AK + PV IL+   ++ D+VRGL  GADDY+ KPF   E  AR+RA++RR +
Sbjct: 61  EVLRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G LS++    TV +    + L  +E  ++ +L  R    + KE     ++ 
Sbjct: 121 GLPNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             +      +++++ +LRKKL         I T+ G GY+L
Sbjct: 181 FDEAVAPNALELYVARLRKKLQPNGPE---IRTIRGLGYLL 218


>gi|332527232|ref|ZP_08403300.1| winged helix family two component transcriptional regulator
           [Rubrivivax benzoatilyticus JA2]
 gi|332111652|gb|EGJ11633.1| winged helix family two component transcriptional regulator
           [Rubrivivax benzoatilyticus JA2]
          Length = 232

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   + L L+SE   V+  D    G+        D +++DLGL D  G +
Sbjct: 7   RVLIVEDEADIRRFVRLALESEGHEVHEADGLRRGLIEAGTRRPDLLVVDLGLPDGDGVD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           ++R LR    + PV +LS  ++ +DK+  L +GADDY+ KPF   EL+AR+RA +RR   
Sbjct: 67  LIRDLRGWS-AAPVIVLSARAAEDDKIAALDAGADDYLVKPFGAGELLARVRAQLRRRAL 125

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                  ++  GD++++L  ++V      +HLT  EY+++  L+ + +  +T    L  +
Sbjct: 126 LSPDDGPVLRFGDITLDLARRSVRRGDEELHLTPIEYKLLGCLATQPDRVVTHRQLLKAV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      +   + V +  LRKK+        ++ T  G GY  R
Sbjct: 186 WGPGHAEDTHYVRVHMANLRKKIEAQPSMPVHLLTEAGIGYRFR 229


>gi|258591200|emb|CBE67497.1| response regulator in two-component regulatory system with KdpD,
           regulation of potassium translocation (OmpR family)
           [NC10 bacterium 'Dutch sediment']
          Length = 253

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED++ +   +   L S+ + ++    GE+G+        D +ILDLGL DI G EV
Sbjct: 29  VVLIEDERPIRRFLRATLVSQGYRLFEAATGEEGLAEAAARPPDVVILDLGLPDIDGLEV 88

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + P+ +LS      DK+  L +GADDY+SKPF   EL+AR+R ++R +  +
Sbjct: 89  IRRLREW-TAVPIIVLSARGQERDKIAALDAGADDYVSKPFGVGELLARMRVVLRHAARN 147

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                      GDL V+L  + V V G  +HLT  EY+++  L       +T++  L  +
Sbjct: 148 LTENTDPTFAVGDLHVDLAVRRVVVGGREVHLTPIEYRLLTTLIHYAGKVVTQQQLLKEV 207

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +  +   +   + V++ +LR+KL        Y+ T  G GY L
Sbjct: 208 WGPQCTEQAHYLRVYVAQLRRKLETDPARPCYLLTEPGVGYRL 250


>gi|168334754|ref|ZP_02692882.1| hypothetical protein Epulo_07020 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 222

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 131/223 (58%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ ED+K LA  +  ML+  N++V V   G   ++  +   +D +ILDL +  + G 
Sbjct: 1   MRILICEDEKQLADILVAMLQYNNYSVDVVGDGVSAVDYIETGNYDGVILDLMMPKLNGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL+ +R A +S PV ILS  S IEDK+ GL  GA+DY++KPF+  EL+ARIRA+ R++ 
Sbjct: 61  EVLKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKAT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 ++ G+ ++N+    + V   +I L  KE+Q++E+L  RK+  ++ +     ++ 
Sbjct: 121 -QNNIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E ++  I V+I  LRKKL   +     I+ V G GY + E
Sbjct: 180 YENEVDITTIWVYISNLRKKLVALSATVQ-IKVVRGVGYRMEE 221


>gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 205

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/208 (33%), Positives = 117/208 (56%), Gaps = 8/208 (3%)

Query: 29  VTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKV 88
             + G  G+EL    ++D I+LD+ L ++ G EVLR LR    + PV +L+   ++ D+V
Sbjct: 2   TAEDGRTGLELALQEKWDLILLDIMLPELSGLEVLRRLRQNNPTVPVILLTARDAVPDRV 61

Query: 89  RGLQSGADDYISKPFNKEELVARIRAIVR----RSRGHAQSLIVTGDLSVNLDAKTVEVQ 144
            GL  GA+DY++KPF  EEL+ARIR ++R    +++   +  +   DL +NL ++ V   
Sbjct: 62  SGLDQGANDYVTKPFAIEELLARIRNLLRITEQQNQPENEQTLHVDDLDMNLKSREVRRN 121

Query: 145 GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNA 204
           G  + LT KE+ +++ L   K    T+E  ++ ++      +  I+DV+I  LR+K+   
Sbjct: 122 GQWVELTPKEFDLLQYLMEHKGEVRTREDIISDVWGYDFVGDTNIVDVYIRYLRQKIEKG 181

Query: 205 AGGKNYIETVWGRGYVLRENAKDETCEY 232
             GK  I T+ G GY+L+ +   E CE 
Sbjct: 182 FKGK-LIHTIRGIGYLLKGS---EDCES 205


>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
 gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces viridochromogenes DSM 40736]
          Length = 225

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 SNDAASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  + +LR K+ +       I TV G GY L   
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224


>gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
 gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 219

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/220 (34%), Positives = 126/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +  ++  +L++E + V     GE      +  ++D ++LDLG+    G 
Sbjct: 1   MRLLLLEDDVMIGEAVLDLLRAEQYAVDWVKDGEAAESALRTQQYDLVLLDLGVPRRDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR+LR  K   PV I +   S++ ++ GL +GADDY+ KP++ +EL+ARIRA++RR+ 
Sbjct: 61  EVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +     +S+N   + V V+G  + L+ +E+ ++E L  R    L++      LY 
Sbjct: 121 GRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEEKLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            +DE     ++V++  LRKKL     G   I  V G GY+
Sbjct: 181 WKDEISSNAVEVYVHGLRKKL-----GAELIRNVRGVGYM 215


>gi|229815013|ref|ZP_04445351.1| hypothetical protein COLINT_02056 [Collinsella intestinalis DSM
           13280]
 gi|229809500|gb|EEP45264.1| hypothetical protein COLINT_02056 [Collinsella intestinalis DSM
           13280]
          Length = 237

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD A+ + +   L    ++V     GE  I        D I+LDLGL DI G EV
Sbjct: 9   ILVVEDDPAVRNLVTTALDLHGYSVEKATDGETAIMDAASRNPDLIMLDLGLPDIDGVEV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           +  +R    + P+ ++S      DK+  L +GADDY++KPF+ EE++AR+RA +RRS   
Sbjct: 69  INKIRSWS-AVPIIVISARVEDSDKIGALDAGADDYLTKPFSVEEMLARVRANLRRSTMI 127

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  S    G L ++  A   E+ G R+ LT  EY+++ LL+   +  LT     + 
Sbjct: 128 TAESVEASTFDNGGLHIDYAAGYAELDGERLSLTPTEYKLLVLLAKNVDKVLTHTFITHE 187

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    + ++  + VF+  LRKK+         I+T  G GY ++
Sbjct: 188 IWGTSWDSDIASLRVFMRTLRKKIEADPSHPTMIQTHVGVGYRMQ 232


>gi|167621347|ref|ZP_02389978.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
          Length = 236

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 121/223 (54%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  +PG 
Sbjct: 4   MRILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQAFDLLILDLGLPRMPGL 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 64  DVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G LS +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 124 GGGPTVVRHGSLSFDQVGRIAYANDRVLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 184 WGEEVSNNAIEVYVHRLRKKIEPSG---VRITTVRGLGYCLEK 223


>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
 gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
           regulatory protein [Bacteroides fragilis NCTC 9343]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  + + L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKLAV 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|30248529|ref|NP_840599.1| response regulator baeR [Nitrosomonas europaea ATCC 19718]
 gi|30138415|emb|CAD84425.1| possible baeR; Response regulators consisting of a CheY-like
           receiver domain and a HTH DNA-binding domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 229

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 66/219 (30%), Positives = 111/219 (50%), Gaps = 2/219 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA      L+   F  +    G + I   K    + I+LDL +    G +
Sbjct: 3   RILIVEDEPRLARLEADYLQHAGFQTHCLSQGLEVIPWLKENTVELILLDLMVPGRDGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      PV I++      D++ GL+ GADDYI KPF+  E+VAR++A++RR + 
Sbjct: 63  ICRDIRSFS-QVPVIIVTARIEEIDRLLGLEMGADDYICKPFSPREMVARVKAVLRRLQP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A +      L+++  +  V+  G  I LT  E+Q++  L  +     ++   ++ +Y  
Sbjct: 122 PAPNSAQQA-LTLSPQSFKVQYDGREIELTAVEFQLLYTLYQQPGRIFSRARLMDLIYQD 180

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           +     + ID  I KLRKK++     K  I +V+G GY 
Sbjct: 181 QRIVSDRTIDSHIKKLRKKIAELIPEKEVICSVYGAGYR 219


>gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49]
          Length = 221

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD  +  +++  LK  ++ V     G       +  ++D ++LDLGL    G 
Sbjct: 1   MRVLLIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL ++R    + PV +++   +++D++RGL  GADDY+ KPF   EL+AR+RA++RR  
Sbjct: 61  DVLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKN 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR-IHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A   +  G +S++   +   V G   + LT +E+ ++  L  R    L++    + +Y
Sbjct: 121 GGAAPTLGNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSRNDLEDRIY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +E E   ++  I  LR+KL     G   I  V G G+++ +NA
Sbjct: 181 GWGEEVESNAVEYLIHSLRRKL-----GGEIIRNVRGVGWMVSKNA 221


>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 228

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 73/229 (31%), Positives = 128/229 (55%), Gaps = 5/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED+K L  ++   L+ + F V      EDG++L     +D IILD+ L  + G+
Sbjct: 1   MKLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGY 60

Query: 61  EVLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           E  R LR       P+ I++ +  I+ ++ GL+ GADDY+ KPF+  EL AR+RA++RR+
Sbjct: 61  EFCRFLREEIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRRN 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  ++ +I  G L+ +  +         + LT +E  ++EL      T  ++E   + ++
Sbjct: 121 QLRSEPVIRYGPLTYDSRSGVFSCSKKELSLTSRESSILELFLRNPGTVFSREEITDKIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY---VLRENA 225
           +   E    I+DV+I  +R+KL  AAG  + I+TV  +GY    LR++ 
Sbjct: 181 ETGFESRSNIVDVYIRYIRRKLE-AAGILDIIQTVPRKGYGLRRLRDDG 228


>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
 gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
           [Cellulomonas flavigena DSM 20109]
          Length = 235

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+ED+++    +   L  E ++V     G + +E    +  D ++LDL L  +PG E
Sbjct: 3   RILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR+     PV +L+      DKV GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCRRLRLDS-DVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121

Query: 122 HAQS--------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
            A+         ++  G + +++D  TV V G  +    KE++++ELL    +  LT+  
Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ ++      + K +DV + ++R K+         + TV G GY L +   +
Sbjct: 182 LIDRVWGSDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKLSDGVGE 235


>gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 241

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR +    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ + G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 235


>gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
 gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum
           S14]
          Length = 224

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 132/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   +  E+G+   + Y  D  I+D+GL D  G 
Sbjct: 1   MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E +   I+V I +LRKK +   G  N I T+ G+GY+   NA+
Sbjct: 181 -DQEGDPNTIEVMISRLRKKFTK-TGQDNPISTIRGQGYIFELNAQ 224


>gi|311279333|ref|YP_003941564.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
 gi|308748528|gb|ADO48280.1| two component heavy metal response transcriptional regulator,
           winged helix family [Enterobacter cloacae SCF1]
          Length = 230

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED K  +  I   L   NF V V   G DG+      +++  ILD+ L  I G+
Sbjct: 1   MRILLVEDQKMASEYIAKGLTENNFVVDVAQNGVDGLHYLLTNDYNLAILDVMLPGIDGW 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +++   R A   TP+  L+    +ED+VRGL+ GA+DY+ KPF+  EL+AR R I+RR  
Sbjct: 61  KIIEMARQAGKQTPIMFLTARDDVEDRVRGLELGAEDYLIKPFSFSELLARARVILRRQN 120

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   ++++   DL+++     V   G RI LT KE+ ++ LL  R    L++ +  
Sbjct: 121 PQHAPSADENILQVADLTLDFIKHRVTRSGVRIELTQKEFLLLRLLMRRSGEVLSRTVLA 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++D   +PE  +IDV I +LR K+ +       + T+ G GYVL 
Sbjct: 181 EQVWDMNFDPETNVIDVAIRRLRSKI-DDGFDDKLLHTLRGAGYVLE 226


>gi|163750074|ref|ZP_02157317.1| transcriptional regulatory protein RstA, putative [Shewanella
           benthica KT99]
 gi|161330131|gb|EDQ01113.1| transcriptional regulatory protein RstA, putative [Shewanella
           benthica KT99]
          Length = 237

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 71/228 (31%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S +SS ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKL-PDYFAGPILLMSALSSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++   + + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPKVESHGLSFGKLSIDPHTQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A 
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIDTPFRIKTVWGQGYLFAPEAW 235


>gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
 gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator
           [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL EDD  +A  I   L ++   V           + +  +FD ++LDLGL D  G 
Sbjct: 1   MHVLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR    + PV +L+   ++ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A ++I  G L  +  +    + G ++ L+ +E  +++ L       L+ E   + +Y 
Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE-NAKDETC 230
             DE E   ++V I  LR+KL N       +ETV G GY L    A +E  
Sbjct: 181 FSDEVESNALNVHIHHLRRKLGNG-----IVETVRGLGYRLGPAQAPEEAA 226


>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
 gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
          Length = 239

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL++D++++   +   L    F V   +   +          D +ILD+ +    G  
Sbjct: 6   HLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R      PV +L+  S   D++ GL+ GADDY+ KPF+  ELVARI+ I RR   
Sbjct: 66  LCRHIRETS-EIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     +    G L    +   V+ +G  + L+  EY ++   + R N  L+++ 
Sbjct: 125 GGQRVTAPDGATYAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+           + ID  I +LRKK+         I+TVWG GY L  + +
Sbjct: 185 LLDITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTLSADVR 237


>gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 220

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 129/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+S+ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIAEGVRKALRSDGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L  R    L+K      +Y 
Sbjct: 121 GRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|27382389|ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 gi|27355560|dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 230

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 130/225 (57%), Gaps = 2/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD   A  +   L +  + V +   G + +      ++  I +D  L DI G  
Sbjct: 7   RILVVEDDPETAGQLVEELTTSGYEVDLAATGREALSHGAARDYAVITIDRMLPDIDGIT 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V+R LR   I+ P  I+S +  ++D+VRGL++G DDY+ KPF+  EL+AR+ A+ RRS  
Sbjct: 67  VMRQLRDDGIAAPFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSET 126

Query: 122 HA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            A ++L+  GDL+++L A+    +G +I L  +E+Q++E L   +   +++ M L H++D
Sbjct: 127 IAKETLLRVGDLAIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAMLLQHVWD 186

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              +P   IIDV++ ++R+K+ +A      I T+ G GY LR   
Sbjct: 187 LHFDPSTNIIDVYVGRVRRKVDDAQAYP-LIHTIRGIGYCLRAPG 230


>gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25]
 gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25]
          Length = 218

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGYGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      I+V I  LRKK       K  I+ + G GY+L 
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYILE 217


>gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
 gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia
           gladioli BSR3]
          Length = 241

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR +A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPYAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNNALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L +      +I+TV GRGYV   N +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILESDPSTPRFIQTVRGRGYVFVPNGE 235


>gi|311104579|ref|YP_003977432.1| transcriptional regulator TctD 2 [Achromobacter xylosoxidans A8]
 gi|310759268|gb|ADP14717.1| transcriptional regulatory protein TctD 2 [Achromobacter
           xylosoxidans A8]
          Length = 235

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 82/221 (37%), Positives = 124/221 (56%), Gaps = 3/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IEDD  LA ++   L+     V   + G     + ++  FD +ILD+GL  + GF
Sbjct: 1   MRILVIEDDADLADALVRRLRRLGHAVDCQNDGLSADGVLQYETFDLVILDIGLPRMSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  LR     TPV  L+    IED+V  L +GADDY++KPF+  EL AR RA++RR  
Sbjct: 61  DILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A  ++  G+L ++  A+ V + G RI L  +EY ++E+L    N  ++K    + L+ 
Sbjct: 121 AQAAGVLRFGELVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIAHKLFA 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             D+     I+V+I +LR+KL    G    IET  G GY+L
Sbjct: 181 FDDDAAPNAIEVYIARLRRKLE---GSPLRIETQRGTGYLL 218


>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
 gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
          Length = 223

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKIPLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 221


>gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 246

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 63/229 (27%), Positives = 116/229 (50%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   +   L+     V +   G       +    D I+LDL L    G  +
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRAALENGAPDLIVLDLMLPGEDGLVL 66

Query: 63  LRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R LR  K  + P+ +L+  +   D++ GL+ GADDY++KPF   EL+ARIR+++RR+R 
Sbjct: 67  CRELRAGKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRARM 126

Query: 121 -------GHAQSLIVTGDLSVN-LDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +  ++  GD  ++      ++  G  + L+G EY+++ +        LT++
Sbjct: 127 LPPGMEVTESAPMLCFGDWRLDTTARHLLDADGTMVALSGAEYRLLRVFLDHPQRVLTRD 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN     + +P  + ID+ + +LR++L + A    YI+T+   GYV 
Sbjct: 187 QLLNLTQGRQADPFDRSIDLMVSRLRQRLRDGAREPRYIKTLRSEGYVF 235


>gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family
           protein [Burkholderia ubonensis Bu]
          Length = 241

 Score =  245 bits (627), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 69/238 (28%), Positives = 116/238 (48%), Gaps = 7/238 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPYAFGRFLLDFQARTLSVDGKPAALSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCEY 232
           L  L+    +   + IDV + +LR+ L +      +I+TV GRGYV   + +     +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILESDPSSPRFIQTVRGRGYVFVPDGEAHAQAH 241


>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
 gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
           [Paenibacillus curdlanolyticus YK9]
          Length = 242

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 21/235 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+A+   +E  L  E +       GE+  EL K    D  +LDL L  + G+E+
Sbjct: 8   IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLPGMDGYEL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
            R +R      P+ ++S   +  DK+ GL+ G+DDY+ KPF+  ELVAR++  ++R +  
Sbjct: 68  CRRIRNE-AEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQQRA 126

Query: 121 -------------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                          + + I+   L++  + + V  QG  + +T KE+ M+ + +   N 
Sbjct: 127 IAPDGVSSAGVDAASSAARILVNGLALIPEERRVFWQGEEVEMTNKEFDMLRVFTEHPNR 186

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             T+   L  ++        + +D  I ++RKK          IE VWG GY +R
Sbjct: 187 AFTRGELLTLVWGDDYFGSDRAVDHLIKRIRKKADMLP-----IEAVWGHGYRMR 236


>gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293]
 gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876]
 gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1]
 gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
 gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342]
 gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550]
 gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24]
 gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26]
 gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4]
 gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201]
 gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15]
 gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2]
 gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185]
 gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676]
 gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis
           Bt407]
 gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 216

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLGI-----PYIKTVKGIGYKIE 215


>gi|170748891|ref|YP_001755151.1| two component transcriptional regulator [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655413|gb|ACB24468.1| two component transcriptional regulator, winged helix family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 251

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 7/229 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+ ++  I   L+  +  V +   G D   +      D I+LDL L    G  +
Sbjct: 21  ILVVEDDREISALIARYLRGNDCRVTLAGDGTDMDRVLAEARIDLIVLDLMLPGEDGLSL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR      P+ IL+  S   D++ GL+ GADDY++KPFN  EL+ARIRAI+RR    
Sbjct: 81  CKRLRGTS-QIPILILTAKSEDVDRILGLELGADDYLAKPFNPRELLARIRAILRRVAAE 139

Query: 123 AQS-----LIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           A        +     ++++  + V   +G RI +TG E+ ++  L LR    L+++  L+
Sbjct: 140 APDADERRRLHFSGWTLDVSLRQVLSPEGARISITGAEFDLLHALCLRPGRVLSRDQLLD 199

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                   P  + IDV I ++R+K+        +I T+   GY+     
Sbjct: 200 LTQGRAAGPFERSIDVLISRIRQKIERDTRNPEFIRTIRSGGYLFTPEV 248


>gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 223

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/226 (33%), Positives = 118/226 (52%), Gaps = 3/226 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  LA      L    + V + + G     + +   +D ++LD+GL  + GF
Sbjct: 1   MRILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGLPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR LR    S PV I+S    ++ ++ GL  GADD++ KPF   EL AR RA++RR  
Sbjct: 61  EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ +  G L V+L A+   V G  I L+ +E+ ++  L       + KE  +  L D
Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            + +  +  ++V+I +LR KL        +I TV G GY+L +   
Sbjct: 181 WKTDISLNAVEVYISRLRSKLD---AHGIHIRTVRGFGYLLDDPVP 223


>gi|254822466|ref|ZP_05227467.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
           13950]
          Length = 234

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/226 (31%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + +L+++D+  LA  + + L+ E +N+     GE  I   +    D ++LD+ L D+ G 
Sbjct: 9   INVLVVDDEPVLAEMVSMALRYEGWNISTAGDGESAIAAARNQRPDVVVLDVMLPDMSGL 68

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           +VL  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR  
Sbjct: 69  DVLHKLRGEIPQLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +   + + +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ 
Sbjct: 129 VTTVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDR 188

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           ++         I++++I  LRKK+ N  G    I T+ G GYVL+ 
Sbjct: 189 VWSYDFGGRSNIVELYISYLRKKIDN--GRDPMIHTLRGAGYVLKP 232


>gi|237797220|ref|ZP_04585681.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331020070|gb|EGI00127.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 230

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+  +   + + L S+ + V     G +G+      + D ++LDLGL D+ G +V
Sbjct: 7   ILVIDDEPQIRKFLRISLVSQGYKVLEAATGMEGLTQAALGKPDLLVLDLGLPDMDGQQV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L   R    + PV +LS  +S   KV+ L +GA+DY++KPF  +E +AR+RA++R+  G 
Sbjct: 67  LSEFREWS-AVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGG 125

Query: 123 AQSL--IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +    +  G L+V+L  + V + G  + LT KEY ++  LS      +T++  L  ++ 
Sbjct: 126 EKPDAALRFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLSRHPGRVITQQQLLKDIWG 185

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                +   + + +  LR+KL +      +I T  G GY L
Sbjct: 186 PTHTEDSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226


>gi|167836011|ref|ZP_02462894.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
           thailandensis MSMB43]
          Length = 232

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 112/223 (50%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ++LIED+K +   +   L+ E   V+  + G  G+      + D  I+DLGL D  G +V
Sbjct: 8   VVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLPDGDGLDV 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           +R LR      PV +LS  +  E+KV  L +GADDY++KPF   EL+ARIRA +RR   S
Sbjct: 68  IRELRGWS-EMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAHLRRRNQS 126

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                 ++  GD+SV+L  + V   G  +HLT  EY+++  L       LT    L  ++
Sbjct: 127 GAAESPVVRFGDVSVDLALRRVWRGGEIVHLTPLEYRLLATLVRHAGRVLTHRQLLRDVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                     + +++  LR+KL        +I T  G GY L 
Sbjct: 187 GPTHVESHHYLRIYMAHLRQKLEADPAQPQHIVTETGVGYRLV 229


>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
           HaA2]
 gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 107/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD+     I   L++   +V     G +          D ++LD+ L    G  
Sbjct: 7   HILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R +    P+ +L+      D++ GL+ GADDY++KPFN  EL+ARIR+++RR   
Sbjct: 67  LCRRVRASSP-LPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQSL 125

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
               S     + +      ++   + +    G  + +T  E+ +++    R    L++E 
Sbjct: 126 AQTASATSGATALTFLGWRIDFRLRELRNPDGALVAMTSAEFDLLQAFCERPGRVLSREA 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+  +        + IDV + ++R+K+       + I+TV   GY+     +
Sbjct: 186 LLDLTHGRNAGSFERSIDVLVSRIRRKIEPDPQSVSIIKTVRSGGYMFTPAVE 238


>gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803]
 gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803]
          Length = 223

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 117/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +     + G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVGFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 221


>gi|210617470|ref|ZP_03291592.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
 gi|210149301|gb|EEA80310.1| hypothetical protein CLONEX_03814 [Clostridium nexile DSM 1787]
          Length = 237

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/223 (32%), Positives = 120/223 (53%), Gaps = 6/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+IEDD+ L   +   L+ E F        +   +L K   FD I+LD  L D  GF 
Sbjct: 12  RILVIEDDEMLNAGLCYNLQMEGFEAAPAFGAKTAKKLWKEKSFDLILLDGNLPDGDGFA 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +R      P+  L+     ED + G ++GADDYI+KPFN + ++ RI+AI+RR  G
Sbjct: 72  VSREIRKES-KVPIVFLTARDMDEDMIEGFENGADDYITKPFNIKIVIQRIKAILRRCEG 130

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               + ++  G+L+V+ ++ TV+  G  + LT  E++++    L     LT+++ L  L+
Sbjct: 131 DDTVEKVLQCGNLAVDFESHTVKKHGKLLTLTPTEFKLLHRFCLNPGQVLTRQILLEKLW 190

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D   +  +   + + I +LR K+++      YI+T++G GY  
Sbjct: 191 DQDGNFVDEHTLTINISRLRAKIADEEYA--YIKTIYGGGYKW 231


>gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
 gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342]
 gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family
           [Klebsiella variicola At-22]
 gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55]
          Length = 219

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDDK +   I+  L    F++     G +G        +DA ILDL L  I G 
Sbjct: 1   MRILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYSAPYDAAILDLTLPGIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR  R      PV IL+   ++  +V GL+ GADDY+ KPF   E+ AR+ A++RR+ 
Sbjct: 61  DILREWRDKGRHEPVLILTARDALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + S +  G +S++ +  T  + G  + L  KE+ ++ELL       L +++    LY 
Sbjct: 121 GQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLYT 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE     ++V +  LR+KL     G  +I TV G GY L
Sbjct: 181 WDDEVSSNAVEVHVHHLRRKL-----GSGFIRTVHGIGYTL 216


>gi|167768929|ref|ZP_02440982.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
 gi|167668569|gb|EDS12699.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
           17241]
          Length = 224

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/222 (32%), Positives = 120/222 (54%), Gaps = 1/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA ++  +++ + + V     G DG++     ++D ++LD+ L +  GF
Sbjct: 1   MRVLIVEDERRLADALCQIMREQKYGVDAVYDGRDGLDYAMSGQYDVVVLDVMLPERSGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+RALR    + PV +L+    I DKV GL  GADDY++KPF+ EEL+AR+RA+ RR  
Sbjct: 61  EVVRALRAQNNAVPVLLLTARDEISDKVTGLDCGADDYMTKPFSPEELLARVRALSRRQG 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +   DL +NL  +T+      + L  KE++++ +L         KE  +  ++ 
Sbjct: 121 EVQHEELRYADLCLNLSTRTLSRGEKSVSLGYKEFEVLHILLSNPRAITPKEELITRVWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              + E   ++ +I  LRKK     G +  I  V   GY L 
Sbjct: 181 ADSDAEDNNVEAYISFLRKKF-FYLGSQTAISAVRKVGYRLE 221


>gi|258645821|ref|ZP_05733290.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
 gi|260403191|gb|EEW96738.1| phosphate regulon response regulator PhoB [Dialister invisus DSM
           15470]
          Length = 226

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/229 (30%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M I  +EDD+++   +   L+ + + +      +D  +  K    D ++LD+ L    G 
Sbjct: 1   MLIYCVEDDESIRDLVGYALRGQGYGMEGFGCADDFYKGMKKAVPDLVLLDVMLPGEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+ +R  + + P+ +++  SS  D VRGL  GADDY+ KPF   EL++RIR+++RRS 
Sbjct: 61  SILKKIREREANIPIIMMTAKSSEFDVVRGLDLGADDYVIKPFGIMELLSRIRSVLRRSG 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             A++    +  G +  + +   V V    + +T KE+Q++  L L K   L++E  +  
Sbjct: 121 KMAENKGELLSFGTIRADRNRHVVTVDEKEVAVTLKEFQLLCYLLLNKGIVLSREQIMQA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           ++D   E E + ID+ I  LR+KL         I T+ G GY L E  K
Sbjct: 181 VWDIPFEMESRTIDMHIMSLRQKLGGEGAA---IRTIRGVGYRLGEREK 226


>gi|113955105|ref|YP_729887.1| two-component response regulator [Synechococcus sp. CC9311]
 gi|113882456|gb|ABI47414.1| two-component response regulator [Synechococcus sp. CC9311]
          Length = 295

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 5/223 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  L   +     S+      +  G   + L +   FD ++LD  L D  G E
Sbjct: 66  QVLLVDDDPELLSFLYEEFTSDKVTCTCSKTGSKALTLLRQQRFDLVVLDWNLPDFDGLE 125

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + + LR +  +TPV +L+    ++ +V+ L  GADDYISKPF   EL AR+RA +RR   
Sbjct: 126 ICQRLRSSGNTTPVLMLTAHDDLDARVQALDYGADDYISKPFELRELHARVRARLRRGTF 185

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +    +  +  GDL +NL  + V    H++ LT +E+ ++  L       L ++  L  
Sbjct: 186 AAAEKQKEQLELGDLRINLLKRAVHRGEHKLSLTQREFDLLCYLIGHHGEVLHRKNILEG 245

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
           ++      +   +DV++  LR+K+         + T+ G G++
Sbjct: 246 VWGAPFVGDPNTLDVYMGYLRRKVEK-PDHPQLLHTIRGIGFM 287


>gi|325066792|ref|ZP_08125465.1| two-component system, regulatory protein [Actinomyces oris K20]
          Length = 219

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/221 (33%), Positives = 117/221 (52%), Gaps = 4/221 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED++ LA +I   L+ E   V V   G   +E     ++D I+LD  L  + G 
Sbjct: 1   MRVLVVEDEEYLAEAIATGLRREAMAVDVVGDGASALEQVAVNDYDIIVLDRDLPVVHGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV R +     ST V +L+   +++ +V G + GADDY++KPF   ELVAR+RA+ RRS+
Sbjct: 61  EVCRRVVRDYPSTRVLMLTASRTLDARVGGFELGADDYLTKPFEFPELVARLRALGRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++    + ++   + V   GH IHL+ KE+ ++++L   +   L+ E  L   +D
Sbjct: 121 PARTPVLEAHGVRLDPFRREVYRDGHFIHLSPKEFAVLQVLMEAEGGVLSAETLLEKAWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P      V I  LR+KL    G    I+TV G GY  
Sbjct: 181 ANADPFTNSTRVTISHLRRKL----GEPRVIQTVPGAGYRF 217


>gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Clostridium cf.
           saccharolyticum K10]
          Length = 230

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 6/229 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+DDK L   ++  +  EN N  V   G+DGI L    ++  I+LD+ +  + GFE
Sbjct: 3   KILIIDDDKELCELLQRSVLVENINADVCHSGKDGIFLLSTKQYQLIVLDIMMPGLDGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            +  +R  K + P+ +L+  S    KVRGL++GADDY++KPF+ +E VAR+ +++RRS  
Sbjct: 63  TMERIRE-KSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQ 121

Query: 122 HAQSLIVTG-----DLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            +      G      L +NLD  +V  +     L  KE++++  L+  +   LTK+    
Sbjct: 122 FSVIDDTFGQLVYKGLEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIYE 181

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +++     +   I V I KLRKK+   +   + I+TV G GY   +  
Sbjct: 182 AVWNEEYCFDDANIMVMISKLRKKIEPDSDKPSIIQTVKGMGYRFSKEV 230


>gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
 gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp.
           oral taxon 137 str. F0430]
          Length = 225

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 118/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   I+ ML+  +  V     G+D  E   + E+D +ILD  +    G 
Sbjct: 1   MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    LR +     + +L+   S+ED+V GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 61  DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 120

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ ++
Sbjct: 121 QKIQHEVDEIGGFRLNRTANILEKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     ID ++  LRKKL +AA     I+T+ G GY L   
Sbjct: 181 GLESDVSSNNIDSYMKMLRKKL-DAASEGEAIKTIRGVGYKLEAP 224


>gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
          Length = 241

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ + G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 235


>gi|300777987|ref|ZP_07087845.1| response regulator [Chryseobacterium gleum ATCC 35910]
 gi|300503497|gb|EFK34637.1| response regulator [Chryseobacterium gleum ATCC 35910]
          Length = 224

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL++ED+  LA SI   L  E++        ++ +   + +++D I+LD+ L D  G 
Sbjct: 1   MKILIVEDEAELAKSISEYLSGESYLCEHAATFDEAMNKTEAFDYDCILLDIMLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L  L+  +    V I+S  ++++DK+ GL+ GADDY++KPF+  EL+AR+ +++RR +
Sbjct: 61  KILEELKKQQKQDGVIIISAKNALDDKIEGLKLGADDYLTKPFHLSELMARVYSVIRRKQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++   +L ++L AKTV V    I LT KE+ ++      KN  ++K     HL  
Sbjct: 121 FSSSNVVKQNELQIDLLAKTVTVNNETISLTKKEFDLLIYFIGNKNKVISKSTLAEHLSG 180

Query: 181 GRDEPEVK--IIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +       +   +  L+KKL +A  G +Y++TV+G GY   
Sbjct: 181 DLADMLDNHDFVYAHVKNLKKKLYDAGCG-HYLKTVYGTGYKWE 223


>gi|325280665|ref|YP_004253207.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312474|gb|ADY33027.1| two component transcriptional regulator, winged helix family
           [Odoribacter splanchnicus DSM 20712]
          Length = 231

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/226 (28%), Positives = 125/226 (55%), Gaps = 9/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D++ L   ++  L+SE F V + +  E+ ++L    E + I+LD+ +  + GF+
Sbjct: 9   KILVVDDEEDLCEILQFNLESEGFAVDIANSAEEALKLL-TDEHELILLDVMMEGMSGFK 67

Query: 62  VLRALRVA-KISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +   +R    ++TP+  L+   +  D + G   G DDYI+KPF+ +E+ AR++A+++R+ 
Sbjct: 68  MAEKVRKEMHMNTPIIFLTAKDTENDMLTGFSIGGDDYIAKPFSIKEVAARVKAVLKRAG 127

Query: 121 G----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +  I  G+L+++L++KTV +   +I LT KE++++ +++   N   ++E  L 
Sbjct: 128 NIALPEKKKTIEIGELTLDLNSKTVYLNEQQILLTKKEFEILSMMAKAPNRVFSREDILG 187

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +        + +DV I +LRKKL        +I    G GY L 
Sbjct: 188 KAWQEDGYVLERTVDVHITRLRKKLGAFG---KHIANRSGYGYCLE 230


>gi|315127248|ref|YP_004069251.1| transcriptional regulatory protein RstA [Pseudoalteromonas sp.
           SM9913]
 gi|315015762|gb|ADT69100.1| transcriptional regulatory protein RstA [Pseudoalteromonas sp.
           SM9913]
          Length = 234

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 113/229 (49%), Gaps = 6/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD +LA  +   L  + + V+V   G++ I   K      I+LD+ L  + G  V
Sbjct: 7   ILLVEDDISLAQWVTEYLTEQGYVVHVCHRGDEVISQVKRLNPQLILLDIMLPGLDGISV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR      P+ +L+      D+V GL+ GA DYI KP     L+ARI++ +R S   
Sbjct: 67  CRDLRSF-YHAPIIMLTARDEEMDEVIGLEVGATDYIIKPVRPRALLARIKSALRYSSDT 125

Query: 123 AQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
            +     ++I  G LS+N +++ V +    ++++  EY ++  L+      ++++     
Sbjct: 126 PKTDDQANMINIGQLSINTESRNVTLNQQDVNISSAEYLLLHYLASNAGQVVSRDAVFKA 185

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
                 +   + +DV I  LRKK ++       I+T+WGRGY+    A 
Sbjct: 186 TKGREYDGLDRSVDVLISALRKKFNDDPQKPEKIKTIWGRGYLFVTTAW 234


>gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3
           str. Ether]
 gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
 gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
          Length = 239

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE + V     G   ++       +  I D+ +  + G E+
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR LR  K   PV  L+      D++ GL+ GADD+I+KPF++  LV R++A++RR    
Sbjct: 70  LRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G     +  G L ++ +  T   +G  + LT  E+ ++  L+ R     +++ 
Sbjct: 129 DGTAKPAGQQAKPLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  YD +   + + ID  I +LRKK          IET++G GY  RE
Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238


>gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++EDD A+A  +  +++S  F     + G     +    +FD I+LD  L    GF 
Sbjct: 14  HILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFS 73

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR A  S P+ +L+ +    D++ GL+ GADDY++KPFN  EL+ARI++I+RR   
Sbjct: 74  ICRRLRAA-CSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASY 132

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
              +  A   ++     ++  ++ +    G ++ +T  E+ ++       N  LT+E  L
Sbjct: 133 AHHQEEALGPMMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTREQLL 192

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +  + G   P  + ID  I ++R+K+        +I+TV   GY+     +
Sbjct: 193 SMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFASKVE 243


>gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii
           RW1]
 gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family
           [Sphingomonas wittichii RW1]
          Length = 235

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/232 (31%), Positives = 115/232 (49%), Gaps = 11/232 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE F V V   GE  ++       D  +LD+ +  + G E+
Sbjct: 5   IALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDIKMPRMDGMEL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           LR LR  K S P   L+      D+  GL  GADDYI+KPF++  L+ARIRAI+RR+   
Sbjct: 65  LRRLRE-KSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTEVR 123

Query: 123 AQS----------LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
           A             IV G L ++     V+  G  + LT  E+ ++E L+ R     +++
Sbjct: 124 ATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKSRD 183

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             ++  Y      + + ID  I +LR+K          IET++G GY   E 
Sbjct: 184 QLMDTAYQDDVYVDDRTIDSHIKRLRRKFRQVDPEFKAIETLYGVGYRFGEE 235


>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 241

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 10/236 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL+++DD  +   +   L+   F+V     G +   +      + I+LDL L    G  
Sbjct: 6   HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R      P+ +L+   ++ D++ GL+ GADDY+ KPF+  EL+ARI+ I+RR+R 
Sbjct: 66  LCREVRAQG-DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124

Query: 122 HAQ--------SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                      S I      ++  A+     +G  + L   +Y ++  L    N  L+++
Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRPLSRD 184

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             + H+Y        + IDV I +LR  +         I TV   GY+L    K E
Sbjct: 185 FLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVKHE 240


>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
 gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
          Length = 227

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RRS
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRSLQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  + TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFAKPLLHTVHGVGYRLAE 222


>gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus
           273-4]
 gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family
           [Psychrobacter arcticus 273-4]
          Length = 234

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLT-DIPGF 60
           +IL++ED+ A+   + + L+   F+        +  +    +    I+LD  L  D  G 
Sbjct: 5   QILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGDKSGI 64

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           +  R L+        PV +L+  S  + KV GL +GADDY++KPF+  EL++RI+A++RR
Sbjct: 65  DFCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR 124

Query: 119 SRG-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           S        I  G L+++  ++   V  + I +   EY+++           T+   L+ 
Sbjct: 125 SSALSGDKPINIGKLTLDAKSQRFMVGDNIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQ 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           ++ G    E + IDV + +LR  L         I+TV G GY  
Sbjct: 185 VWGGNVYIEDRTIDVHVKRLRTLLRPY-DCDTLIQTVRGTGYRF 227


>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 228

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|160878900|ref|YP_001557868.1| two component transcriptional regulator [Clostridium
           phytofermentans ISDg]
 gi|160427566|gb|ABX41129.1| two component transcriptional regulator, winged helix family
           [Clostridium phytofermentans ISDg]
          Length = 245

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/240 (28%), Positives = 124/240 (51%), Gaps = 10/240 (4%)

Query: 1   MR---ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDI 57
           M+   IL+IED++ + + I   L + ++ V  +  G +G+ +   +  D I+LDLGL DI
Sbjct: 1   MKNTTILIIEDEQNICNFIATNLNAYDYRVLKSFTGAEGLSIITSHCPDLILLDLGLPDI 60

Query: 58  PGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR 117
            G E++  +R    + P+ ++S  +  ++KV+ L  GADDYI+KPF   EL+ARIR  +R
Sbjct: 61  DGMEIISKIRSWS-TIPIIVISARTQEKEKVQALDLGADDYITKPFGTSELLARIRTALR 119

Query: 118 RS------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
            +      +    S+    D  ++ +   V V G  +HLT  E++++ LL+      +T 
Sbjct: 120 HNASLESGKNFPPSIFRAKDFVIDFNKHIVMVGGKDVHLTQIEFKLVSLLANNSGRVMTY 179

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDETCE 231
           +  +  ++    +   +I+ V +  +R+K+        YI T  G GY + +    +T E
Sbjct: 180 DSIITKIWGPYADRNNQILRVNMANIRRKIEANPADPQYIFTEVGIGYRMIDEEPMQTTE 239


>gi|304440638|ref|ZP_07400522.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370825|gb|EFM24447.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 216

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 123/224 (54%), Gaps = 10/224 (4%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+I +IED++ +   IE  L ++ F V   + G D  +       D I+LD+ L  + G 
Sbjct: 1   MKIAIIEDEEDIRKLIEYALSTQGFEVSTFEKGPDFFK--TEILPDIILLDIMLPGMSGQ 58

Query: 61  EVLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           E+L+ +R  +   +T V +L+  S+  D V  L++GADDYI KPF   EL++R++A +RR
Sbjct: 59  EILKKIRENRKFDNTLVIMLTAKSAEMDVVSCLEAGADDYIKKPFGVMELISRVKAHIRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A+  I   D+ ++   +TV+  G  I+LT KE+++++ L+  K+  LT+E  +  +
Sbjct: 119 IGREAEE-IEVRDIMIDTKRRTVKKDGEEINLTYKEFELLKYLAENKSIVLTRENIIEKI 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      E + +D+ I  LR+K+        YI T+ G GY + 
Sbjct: 178 WGFDYIGETRTVDMHIASLRQKIGED-----YIATIRGVGYKME 216


>gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
 gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family
           [Ktedonobacter racemifer DSM 44963]
          Length = 226

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/223 (28%), Positives = 105/223 (47%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+IED+  +       L+   +       G+  +EL   ++ D  I+D+ L  + G 
Sbjct: 1   MEVLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFVEHKPDLAIIDINLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            V +A+R    + P+ I++   S ED+V+GL  GADDYI KPFN   LVAR++A++   R
Sbjct: 61  NVCKAIRTTS-TMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL--RR 117

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                      L ++ +  +V   G  I LT   + ++  L+      L++   +N +Y 
Sbjct: 118 HDRTRRRHFKGLVIDPETMSVMKGGTSITLTTTRFNLLLALASHPRAVLSRAQLVNQIYS 177

Query: 181 G--RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    + ID  I  LR+ +        +IETV+G GY  
Sbjct: 178 DPSSHFVYDRTIDAHIKALRQSIETDPKNPQFIETVFGSGYRF 220


>gi|291568744|dbj|BAI91016.1| two-component response regulator (OmpR subfamily) [Arthrospira
           platensis NIES-39]
          Length = 253

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/228 (31%), Positives = 117/228 (51%), Gaps = 7/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+DD A+A  + + L+   + V +   G  G  L      D IILDL L  + GF 
Sbjct: 3   RILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDGFT 62

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           V + LR  + +   PV +L+ +   +DKV G  +GADDY++KPF  EE++AR+RA++RR+
Sbjct: 63  VCQRLRRDERTGEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRT 122

Query: 120 RGHAQ-----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               Q      ++  G L++  +          + LT  E++++  L  R   T+     
Sbjct: 123 DRIPQAAKHSEILSYGVLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVAPSEI 182

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    + +++ I V I  LR K+        YI+TV+G GY L 
Sbjct: 183 LKEVWGYDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLE 230


>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
 gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
          Length = 224

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/223 (27%), Positives = 115/223 (51%), Gaps = 9/223 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD +L   +   LK   +  +  + G + +++ +    D II D+ + ++ G+E
Sbjct: 3   QILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR A    P+ +++   S EDK  G  +GADDY+ KP +  E++ R+ A+++RS+ 
Sbjct: 63  LTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSKL 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQ---GHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            ++  +  G   ++ DA+TV +    G  I     E++++  L    N   T+   L+ L
Sbjct: 123 ASEHTMTVGSCVLDYDAQTVSIDGGAGETIP--QMEFKLLFKLLSYPNKIFTRRQLLDEL 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNY-IETVWGRGYV 220
           +    + + + +DV I +LR          ++ I TV G GY 
Sbjct: 181 WGMDKDVDERTVDVHIKRLR---ERYGSTDDFSIVTVRGLGYK 220


>gi|300766939|ref|ZP_07076852.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300495477|gb|EFK30632.1| DNA-binding response regulator [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 234

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 8/233 (3%)

Query: 1   MR--ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIE--LCKFYEFDAIILDLGLTD 56
           M+  IL++ED+ +L+  +   L+ E+FNV V   G   +E       E   I+LD  L  
Sbjct: 1   MKKTILIVEDEGSLSGYLTKELQFEDFNVLVAADGLAAMETYQAHQNELLLILLDWMLPK 60

Query: 57  IPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV 116
           + G EVLR +R      PV I++    + DKV GL +GADDYI+KPF  EEL+ARIR I 
Sbjct: 61  LDGMEVLRRIR-KHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQ 119

Query: 117 RRSRGHAQSLIVT--GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           RR     +   V    D+ ++  A  V      + LT +EY +++      +   T++  
Sbjct: 120 RRIENQVEPNQVYQLDDVQLDTKAHRVTNGQEEVTLTHREYDLLQFFLAHPDEVFTRDDL 179

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           L+ ++      +  ++DV++  LR K++        I+TV G GY LRE   D
Sbjct: 180 LDQVWGADFLGQQNVVDVYVGYLRNKITTTGASP-LIQTVRGVGYKLREPMSD 231


>gi|10802733|gb|AAG23588.1|AF244639_1 DNA-binding response regulator [Carboxydothermus hydrogenoformans]
          Length = 206

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 5/195 (2%)

Query: 37  IELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSG 94
           + L K    D +ILD+ L  + G EV + +R  + +   P+ +LS      DK+ GL+ G
Sbjct: 12  LRLXKKSFRDLVILDIMLPGMSGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELG 71

Query: 95  ADDYISKPFNKEELVARIRAIVRRSRGHA---QSLIVTGDLSVNLDAKTVEVQGHRIHLT 151
           ADDY+ KPF+  ELVAR++A +RR  G     + +I   D+ ++ +   V V+G ++  T
Sbjct: 72  ADDYMVKPFSPRELVARVKARLRRLEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFT 131

Query: 152 GKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYI 211
            KE+++++LL+       T+E  L  ++      + + +DV I  +R+K+ +      YI
Sbjct: 132 PKEFELLKLLASNPGKVFTREYLLEKIWGYEFLGDTRTVDVHIRHIRQKIEDNPADPVYI 191

Query: 212 ETVWGRGYVLRENAK 226
           ETV G GY   E  K
Sbjct: 192 ETVRGVGYRFGEEKK 206


>gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family
           [Pseudomonas fluorescens Pf0-1]
          Length = 241

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/228 (26%), Positives = 113/228 (49%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +   ++       + V V   GE           D IILDL L    G  
Sbjct: 8   RLLIVDDDGEILSLLKKFFVQHGYQVDVAAHGEAMWAAIAQARPDTIILDLMLPGEGGLS 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   +  P+ +L+ M+ + D++ GL+ GADDY++KPF  +EL+AR+RA+ RR   
Sbjct: 68  LCQKVRAQ-MGIPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRRVGE 126

Query: 122 HAQS-------LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
           +A S       ++      +++  + +   +G  I ++  E+ ++ +L       LT+E 
Sbjct: 127 NAPSGAEPSRPVMAFAGWHLDITCRELRSPEGVMIPMSAGEFDLLLVLLEHPQRILTREQ 186

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++  +    +   + IDV I +LR+K+   +   + I TV   GY+ 
Sbjct: 187 LIDLTHGQGHDAYDRSIDVQISRLRRKIEPDSKRPDLIRTVRNGGYMF 234


>gi|329938522|ref|ZP_08287947.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
 gi|329302495|gb|EGG46386.1| two component system response regulator [Streptomyces
           griseoaurantiacus M045]
          Length = 232

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/228 (32%), Positives = 119/228 (52%), Gaps = 3/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++DD  +A  +  + + E +       GE+ +     +  D ++LDL L  + GF 
Sbjct: 5   RLLVVDDDPPIADLVATVARYEGWEAVTAYSGEEALTRAAAFRPDIVVLDLMLPGVDGFG 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL  LR A +S PV  L+    + D+V GL  G DDY+ KPF  EEL+AR+R ++RRS  
Sbjct: 65  VLDRLRGAGMSVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSLG 124

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G  +S++   DL+++ D + V      + LT  EY ++  L  +    LTK   L+ ++
Sbjct: 125 PGGPRSVLRVADLTMDEDTREVRRGDRLLALTPTEYDVLRCLLRKSPAVLTKAQILDDVW 184

Query: 180 DGRDEPEVKIIDVFICKLRKKLS-NAAGGKNYIETVWGRGYVLRENAK 226
                    ++++ + +LR+KL     G    I TV G GYV R  A+
Sbjct: 185 QYGFGGRSNVVELVVSRLRRKLEATDGGAVPLIHTVRGVGYVARRAAE 232


>gi|315651479|ref|ZP_07904502.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
 gi|315486299|gb|EFU76658.1| subtilin biosynthesis regulatory protein SpaR [Eubacterium
           saburreum DSM 3986]
          Length = 230

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+I+D+K L   +   LK+    V     GE GI+L +  + D IILD+ +    GFE
Sbjct: 3   RILIIDDEKELVMLLADELKAVGHEVLSAYDGETGIKLARK-QPDLIILDIMMPKADGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V  A+R   +  P+  LS   S  DK++GL  G DDYI KPF  +EL+A+I A +RR + 
Sbjct: 62  VCNAIR-DDVLCPIIFLSARQSEADKIKGLNIGGDDYIVKPFGLKELMAKIEANLRREKR 120

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H ++ +  G+LS+N+   TV++  + + LT  EY ++E L+L      ++E  
Sbjct: 121 SQYINAEHKRNKLYFGELSINIKECTVKIGSNDLLLTRLEYNIVEFLALHAGQIFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              ++    + +   +   I K+R K         YI TVWG GY  
Sbjct: 181 YEKIWGYDSDGDSSTVVEHIKKIRAKFIEGGSDTEYISTVWGIGYKW 227


>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
          Length = 231

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/221 (28%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENF-NVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           RIL+++D+  L   ++ +     F  V     GE  +++C+  E D +ILD+ +  + GF
Sbjct: 5   RILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVMMPGMDGF 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
             L+ LR      PV +L+     EDK  G ++GADDY+ KPF  +EL+ R++AI++R  
Sbjct: 65  AALKELRKTS-KIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVY 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +     +V+L+   V+  G  I LT KE+Q+ E L   +   +T       +  
Sbjct: 124 PEKERKVFFDAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +     +   I  LR+K+         + T+ G GY L
Sbjct: 184 DFWQGYESTLATHIRHLREKIEENPSKPVALVTIKGIGYRL 224


>gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
           10507]
          Length = 225

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 121/223 (54%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L ++++  L+ E F V     GED +   +    D I+LD  L  + G 
Sbjct: 1   MRILLVEDDENLCYTLQYQLEQEGFLVDTCMDGEDALFFIRERVHDLILLDRMLPSMDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+ALR  KI TPV  L+ +SS++DK+ GL  GADDY+ KPF  EEL+ARIR + RR +
Sbjct: 61  SVLKALRREKIFTPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIRCLSRRPQ 120

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                S+I  GD+S + D K +        L+ KE  ++E+        L ++  L+ ++
Sbjct: 121 KWEGSSVISLGDISFDPDQKKLFCHTKECSLSKKEGALMEIFLRNPGQILPRQTLLSRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               E E   +D +I  LR++L +        + V G GY L 
Sbjct: 181 GPDSEVEDGNLDNYIYFLRRRLRSVDSRLEL-KAVRGVGYQLE 222


>gi|166999354|ref|ZP_02265195.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
 gi|243064651|gb|EES46837.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
          Length = 220

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD  +   +E  LK E F V      +      +   +  ++LDLGL D  G 
Sbjct: 1   MHVLLVEDDPLIGSGLEQGLKQEGFAVDWAQNADAATLALRTTSYGLLLLDLGLPDKDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL ALR    + PV +++   ++ D++ GL  GADDY+ KPF  EEL+ARIRA+ RR  
Sbjct: 61  AVLAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ+++  G L ++     V      + L+ KE+ ++  L       +++E F   LY 
Sbjct: 121 GRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E E   + V I  LRKKL +       I TV G GY + + A
Sbjct: 181 WGEEIESNAVQVHIHNLRKKLGHDT-----ILTVRGVGYRIGDGA 220


>gi|68347297|gb|AAY94903.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5]
          Length = 229

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/218 (32%), Positives = 108/218 (49%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L+ E F      LG   +E  +    D IILD+GL DI GFE
Sbjct: 6   HILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGLPDISGFE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + LR      PV  LS      D+V GL+ GADDY+ KPF+  E+ AR++AI++R   
Sbjct: 66  TCKQLRRFS-EVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 124

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                 V     ++ +   +  +G  + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 125 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDALGVM 184

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   A     I+T  G GY
Sbjct: 185 ADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 222


>gi|209883402|ref|YP_002287259.1| FeuP protein [Oligotropha carboxidovorans OM5]
 gi|209871598|gb|ACI91394.1| FeuP protein [Oligotropha carboxidovorans OM5]
          Length = 221

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 136/221 (61%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  +A  ++  L+   + V V   GE    L +  ++DAI+LDLGL  + G 
Sbjct: 1   MRVLVVEDEPRIAADLKKALERTLYAVDVAHDGEKAWFLGETEDYDAIVLDLGLPRLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR A ++TP+ IL+      +KV G+ +GADDY++KPF  EEL+AR+ AI RR+ 
Sbjct: 61  SVLRRLREAGVTTPIVILTARDGWREKVEGINAGADDYLTKPFQMEELLARLGAITRRAA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA ++I  G+L V+  A+T  + GH++ L+  EY+++  L + +  TL++   L HL+D
Sbjct: 121 GHASAIIKAGELEVDTRARTAMLSGHQLALSAMEYRLLAYLLMHRGRTLSQGELLEHLHD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   I+  I +LRKKL     G   IET  GRGY +
Sbjct: 181 GDTERDGNAIEALIARLRKKL-----GFPLIETHRGRGYCI 216


>gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis
           G4]
 gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family
           [Burkholderia vietnamiensis G4]
          Length = 220

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 130/225 (57%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ +A  +   L+++ F V     G+  +       +D ++LDLGL    G 
Sbjct: 1   MRILLVEDDRMIADGVRKALRADGFAVDWVQDGDAALTALGGETYDLLLLDLGLPKRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VLR LR   ++ PV I++   ++ D+V+GL +GADDY+ KPF+ +EL AR+RA++RR  
Sbjct: 61  DVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G ++SLI  G L+++  +  V + G  + L+ +E+ ++E L +R    L+K      +Y 
Sbjct: 121 GRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEEKMYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +E     ++V+I  LRKKL +       I  V G GY++ + +
Sbjct: 181 WGEEIGSNTVEVYIHALRKKLGSD-----LIRNVRGLGYMVVKES 220


>gi|37680589|ref|NP_935198.1| putative DNA-binding response regulator [Vibrio vulnificus YJ016]
 gi|37199337|dbj|BAC95169.1| putative DNA-binding response regulator [Vibrio vulnificus YJ016]
          Length = 266

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 5/230 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+L+EDD  LA  I+  L++  F + +   G   ++     + D +ILD+ L    G E
Sbjct: 35  RIILVEDDLELAELIKDFLQNYEFQIDIVSDGFHAVDAILSNQPDLVILDIMLPGQSGME 94

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R +K    + + + +    D+V GL+ GADDYI K      L++RIRA++RR   
Sbjct: 95  VCKAIR-SKYHGMILMQTALDDDIDQVMGLELGADDYIVKQVKPRLLLSRIRALLRRHER 153

Query: 122 ----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                ++  +  G L +NL  ++V +    + LT  E++++ LL+      ++++    H
Sbjct: 154 LTAESSKDDLQLGPLVINLQHRSVTLHQQALKLTTSEFELLLLLARHVGQVVSRDDIAQH 213

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +     +   + ID  I +LR+ L++       I+T+ G GY L  ++ +
Sbjct: 214 IRGFEYDGLDRSIDRRISRLRRTLNDDPNEPTLIKTIRGVGYQLCASSWE 263


>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
 gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
 gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
           TK24]
          Length = 225

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              + +++D  + +LR K+ +       I TV G GY L   
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDPP 224


>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
 gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
           [Bacteroides sp. 2_1_16]
          Length = 228

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 4/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IED++ +A  +   L+   +N  V   G  G+ + +   FD +I D+ L  + GFE+
Sbjct: 4   ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R A  + P+ +L+ + S +DK+ G  +GADDY+ KPF+  EL ARIR +++R    
Sbjct: 64  CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRKLAV 123

Query: 122 --HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  +   DLSVNL  K+V+  G  I L+ KEY ++  +       +++    + ++
Sbjct: 124 VTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADKVW 183

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +   +     IDV+I  LRKK+      K  I T  G G++L +
Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFDTK-LIHTKTGMGFILTD 226


>gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 227

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 121/224 (54%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L +E  +V V   G + + L     FD ++LD+ L  + G+ 
Sbjct: 4   RVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYR 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL  LR   ++TPV +LS      D+  GL  GAD Y+ KPF+   LVA++RA++RR   
Sbjct: 64  VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             +  +  G+L ++  ++ V   G  + L+ +EY ++  L+ R    ++KE  L  ++  
Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
                  +++V++  LR+KL+ A  G + ++TV G GY + +  
Sbjct: 184 DQFVTRNVVEVYVGYLRRKLAAAGAG-HLVQTVRGHGYRVSDEP 226


>gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia
           AU 1054]
 gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia
           HI2424]
 gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia
           MC0-3]
 gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia AU 1054]
 gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia HI2424]
 gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family
           [Burkholderia cenocepacia MC0-3]
 gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 241

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR++A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPFAFGRFLLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   + +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPDGE 235


>gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator
           [Aeromonas veronii B565]
 gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family
           [Aeromonas veronii B565]
          Length = 240

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   +   L    F V     G +  +    +  D IILD+ +    GF 
Sbjct: 6   QLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIMMPGEDGFT 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+  S   D+V GL+ GADDYI+KPF+  EL ARI+A++RR+  
Sbjct: 66  LCQQIRRDS-QVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRRAEF 124

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +   + +++  +  +    G  + L+G +  ++ +   +    L ++ 
Sbjct: 125 RQPEKEKEPSRRLRFAEWTLDTLSHQLTHDDGSLLDLSGSDAMLLGMFLQQPGVVLDRDT 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +        P  + IDV I +LR+KL +       I+T+ G GY+L     +
Sbjct: 185 ISDATRGRESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYMLIAEVHE 238


>gi|327482737|gb|AEA86047.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri DSM
           4166]
          Length = 223

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 3/222 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED   LA S+   L+   + V +   G          ++   ILD+GL  + GF
Sbjct: 1   MRILLVEDHPQLAESVAQALRGAGWTVDLLHDGIAADLALASEDYALAILDVGLPRLDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL  LR    + PV +L+    + D+V GL  GADDY++KPF   EL AR++A++RRS 
Sbjct: 61  QVLARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +     G L  +LDA+   +    + LT +E  ++E L  R    ++K+     ++ 
Sbjct: 121 GGGERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++     I++++ +LRKKL    G    I T  G GY+L 
Sbjct: 181 LDEDASADAIEIYVYRLRKKLE---GQPVRIVTFRGLGYMLE 219


>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
 gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
          Length = 230

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D++ +   ++++L  + + V     GE+ IEL        +ILD+ +    G  
Sbjct: 4   RILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKSGIV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+  L+      DK  G  +G DDYI+KPF+  +L+ R++A++RR+  
Sbjct: 63  VCSEIRQKSF-VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +        +  I  GDL V+L++  V ++G  + LT  EY+++ LL   +    + E  
Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYKILRLLITHRKKIFSMEQI 181

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++   +      + V +  LRKK+   +    YI+T WG+GY
Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGY 227


>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
 gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
          Length = 225

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 4/225 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL++D+  +   + L L    +N      GE+ I   +   F  ++LD+ +  + G+E 
Sbjct: 4   ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +++      D V+GL+ GADDY++KPF++EEL ARI A++RR+  H
Sbjct: 64  CKKIRSFS-NIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTNEH 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            Q  I    +  +     + V    + LT  E+ ++ L     N  L ++  +  ++   
Sbjct: 123 KQ--IQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGLN 180

Query: 183 DEPEVKIIDVFICKLRKKLSN-AAGGKNYIETVWGRGYVLRENAK 226
              E + +D  I  LR KL        ++++TV+G GY   +  +
Sbjct: 181 TNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYRWIDTEQ 225


>gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
          Length = 220

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/221 (36%), Positives = 127/221 (57%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++ +A  +E  L++  F   V   G+   +      FD I+LD+GL    GF 
Sbjct: 3   RILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR A++S PV IL+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++  G+LS++L  +        + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   +ETV G GY L
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAGRVETVRGMGYRL 218


>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
 gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
          Length = 228

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 12/226 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++   L++E F+V     G   +  C+    D ++LD+ L    G E
Sbjct: 5   RVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGYDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +  A    PV +L+  +   D + GL  GADDY+SKPF+   LVAR+ A++RR+  
Sbjct: 65  VCRRV-QASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADR 123

Query: 122 HAQSL------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             +++      +  GD+ V+L  + V      IHLT  E+ ++   + R    + +E  L
Sbjct: 124 AQETVPAERDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASRPRAAIARESLL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++   D    + +D  +  LR+KL     G + I TV G GY L
Sbjct: 184 AEVWGWGDGAGSRTVDSHVKALRRKL-----GGDLIRTVHGVGYAL 224


>gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
 gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
          Length = 229

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++     +  I+LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +    L +++  K V +    + LT KE++++ LL   K    ++E  L
Sbjct: 124 ATMETEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 ARIWSDEVYVLDRTIDVNITRLRKKIGEYG---KCIVTRLGYGYCFE 227


>gi|257094372|ref|YP_003168013.1| winged helix family two component transcriptional regulator
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046896|gb|ACV36084.1| two component transcriptional regulator, winged helix family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 240

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 13/235 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD+ LA      L+  +F+V V   G+           D +ILD+ L    GFE
Sbjct: 4   RILLVEDDERLAELTAEYLRKNDFDVDVESRGDTAEARILNERPDLVILDVMLPGRDGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V RA+R       + + +      D++ GL+ GADDYI+KP     L+ARI+A++RR+  
Sbjct: 64  VCRAVRGQYGGV-ILMFTARDEDFDQIFGLELGADDYIAKPVQPRLLLARIKALLRRAPT 122

Query: 120 ----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                          + +  G   ++   ++  +    I LT  E+ ++ LL+      L
Sbjct: 123 LGSGFTGENPDAEEPAELAFGRFRISQATRSSHLGSDSIDLTTAEFDLLWLLARHAGNIL 182

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +++  L  L     +   + ID  I +LR+KL +       I+TV G+GY+  ++
Sbjct: 183 SRDDLLQELRGIGFDGLDRSIDARISRLRRKLGDDPENPTRIKTVRGKGYLFSKH 237


>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
 gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
          Length = 233

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/228 (34%), Positives = 118/228 (51%), Gaps = 9/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+D+K L   +   +K     V V   GE+GIE       D I+LD+ +  I GFEV
Sbjct: 7   ILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEK-SKLNPDLILLDIMMPKIDGFEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
            + +R   +  P+  LS   S  DK+RG   G DDYI+KPF   EL+A+I A +RR +  
Sbjct: 66  CQKIR-DNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREKRS 124

Query: 122 ------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                 + +  +  G+LS+++  + VEV G  I LT  EY+++ELL+L      TKE   
Sbjct: 125 QYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQIY 184

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             ++      +   +   I K+R+K S     + YI TVWG GY   +
Sbjct: 185 EKVWGYDKGGDNTTVVEMIKKIRRKFSTIDDTEQYISTVWGIGYKWNK 232


>gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
 gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family
           [Burkholderia ambifaria MEX-5]
          Length = 224

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/225 (33%), Positives = 123/225 (54%), Gaps = 4/225 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L +EDD   A+ I   L +  F V   D G +G+       +DAI LD  L    G 
Sbjct: 1   MRVLTVEDDAVTANEIVGELSARGFEVDWIDNGREGMMRAMSASYDAITLDRMLPGADGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L A+R   I TPV +LS +  +++++RGL++G DDY++KPF+  EL ARI  ++RR +
Sbjct: 61  AILTAMRTVGIDTPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQ 120

Query: 121 GH---AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                 Q+L+  G L ++L ++        I L   E++++E +      T+T+ M    
Sbjct: 121 ASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEA 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++    +P   +IDV + +LRKK+ +  G    I+TV G GY+LR
Sbjct: 181 VWGYHFDPGTNLIDVHMGRLRKKI-DPPGAVPMIQTVRGSGYMLR 224


>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Coprococcus catus GD/7]
          Length = 246

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/225 (32%), Positives = 117/225 (52%), Gaps = 1/225 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++ED+K L   I   L    + V   + GE  +++     +D I+LDL L  + G E
Sbjct: 22  KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLPGMDGME 81

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR     T V ILS  S I DKV GL SGA+DY+ KPF+ +EL AR+R++ RR   
Sbjct: 82  ILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRKFV 141

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G L  +   +    + + + LT KE  ++E L L +   +++E  + H++D 
Sbjct: 142 QKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVWDS 201

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
             +     I V +  LRKKL  A  G + I    G GY +  +++
Sbjct: 202 SVDSFSGSIRVHMSSLRKKLK-AGLGYDPIVNKIGEGYKIGGDSR 245


>gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
 gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
           profundum 3TCK]
          Length = 257

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 110/246 (44%), Gaps = 22/246 (8%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +L+++D   +   ++  L   N+ V V   G++  +  +    D I+LDL L    G  
Sbjct: 11  HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDEMEQCLRDNTIDLIVLDLMLPGKDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LRV   + PV +L+ M    DK+ GL+ GADDY+ KPFN  EL+ARI+A++RR   
Sbjct: 71  LCRELRV-HSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRRFNA 129

Query: 119 -----------------SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIEL 160
                             +     +        ++  + +    G  + LT  E+ ++++
Sbjct: 130 IPEGKSVLKSKADSVEEVQDKESHVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKV 189

Query: 161 LSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
                   L++E  L+       +   + ID  I +LRKKL         I+T+WG GY 
Sbjct: 190 FVEHPRKVLSREQLLDLAKGRETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGGGYQ 249

Query: 221 LRENAK 226
           +    K
Sbjct: 250 MVCEVK 255


>gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
 gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
 gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB
           [Acinetobacter radioresistens SH164]
          Length = 225

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 10/225 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD  +A S   +L+ + F V   + G DG++L K  EFD ++LDLGL  + G +
Sbjct: 3   KILIIEDDFMIAESTITLLQYQQFAVQWVNNGIDGLKLLKTQEFDIVLLDLGLPLMDGMQ 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           VL+ +R  K + PV I+S    + ++V GL  GADDY+ KP+  +EL+ARI+A++RRS  
Sbjct: 63  VLKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRSTI 122

Query: 120 ---RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              +     ++  GDL ++L+  +   +   I L+ +E+ ++  L        ++    +
Sbjct: 123 TSIQTETVQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLED 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            LYD   E     I+V+I  LR KL     GK++I T+ G GY L
Sbjct: 183 KLYDIDSEINSNTIEVYIHHLRTKL-----GKDFIRTIRGLGYRL 222


>gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6]
 gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6]
          Length = 229

 Score =  245 bits (627), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 10/227 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D++ L   ++  L++E + V   +  E+ +++     +  I+LD+ + +I GF+
Sbjct: 5   RILVVDDEEDLCEILKFNLENEGYEVDTANSAEEALKM-DISSYHLILLDVMMGEISGFK 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+  ++   +  D V G   GADDYISKPF+  E++AR++A++RR+
Sbjct: 64  MANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRT 123

Query: 120 R----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A   +    L +++  K V +    + LT KE++++ LL   K    ++E  L
Sbjct: 124 ATMEAEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFSREDIL 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++        + IDV I +LRKK+         I T  G GY   
Sbjct: 184 ARIWSDEVYVLDRTIDVNITRLRKKIGEYG---KCIVTRLGYGYCFE 227


>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
 gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
 gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
 gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
          Length = 223

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + + L +  EFD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYKWK 221


>gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48]
 gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48]
          Length = 226

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 70/218 (32%), Positives = 111/218 (50%), Gaps = 1/218 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            IL++ED+ A+A ++   L+++  +     LG   +E  +    D +ILD+GL DI GFE
Sbjct: 3   HILIVEDESAIADTLVYALQADGHSTEWVSLGSAAVEQQRLRPADLVILDIGLPDISGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             R LR      PV  LS   +  D+V GL+ GADDY+ KPF+  E+ AR+RAI++R   
Sbjct: 63  TCRQLRRFS-EVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             + +       ++  A  +  +G  + LT  E+++++ L  +     ++E  L+ L   
Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGLGVA 181

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            D    + ID  I  LR KL   A     I+T  G GY
Sbjct: 182 SDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGY 219


>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
 gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
 gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
 gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
 gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
 gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
 gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
 gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
 gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
 gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
 gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
 gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
 gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
 gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
 gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
 gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
 gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
 gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
 gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
 gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
 gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
 gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
 gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
 gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
 gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
 gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
 gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
          Length = 223

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 221


>gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
 gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator
           KdpE [Eubacterium eligens ATCC 27750]
          Length = 232

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/226 (33%), Positives = 119/226 (52%), Gaps = 7/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD  + + I   LK+ N+       GE  I     +  D I+LDLGL DI G E
Sbjct: 5   QILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDIDGVE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V++ +R    +TP+ ++S  +   DK+  L +GADDY++KPF+ +EL+AR+R  VRR   
Sbjct: 65  VIKKIRTW-TNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTVRRLSL 123

Query: 121 -----GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                    S+   GDL ++  A    + G  +HLT  EY+++ LLS      LT     
Sbjct: 124 MQTDMTQNTSVFENGDLKIDYAAGCAYLNGEELHLTPIEYKLLILLSRNVGRVLTYTYIT 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            +++    E ++  + VF+  LRKK+        YI+T  G GY +
Sbjct: 184 KNIWGSSWENDLASLRVFMATLRKKIEKDVNSPQYIQTHIGIGYRM 229


>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
 gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
 gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
 gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
 gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
 gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 223

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  EFD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       ++Y+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPIEDYLETVYKVGYKWK 221


>gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp.
           ORS278]
 gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family)
           [Bradyrhizobium sp. ORS278]
          Length = 235

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 9/231 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK--FYEFDAIILDLGLTDIPGF 60
           +L+IEDD  +   +   L  E F V V   G   ++  +  F + D ++LD+ L    G 
Sbjct: 7   LLIIEDDIEIRSLLRDHLAREGFRVDV-GDGGAALDRFRNTFGDPDLVVLDIMLPGEDGL 65

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R LR A    P+ +L+      D++ GL+ GADDY+ KPF+  ELVARIRAI+RR+ 
Sbjct: 66  SICRRLRAAS-RVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRRAE 124

Query: 121 GHA---QSLIVTGDLSVNLDAKTV-EVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                 +  +V   L+V+LD + +   Q   + LT  E++++    +R N  L+++  ++
Sbjct: 125 PAPLENRRFLVNATLTVDLDKREIAHAQDGALPLTSAEFELLGCFLVRPNRVLSRDQLMD 184

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
                + +P  + IDV + +LRKK+    G +  I+TV   GY+   + K+
Sbjct: 185 WTRGRQADPLDRTIDVQVSRLRKKIERD-GEEELIKTVRSAGYIFTGSVKE 234


>gi|120609062|ref|YP_968740.1| two component transcriptional regulator [Acidovorax citrulli
           AAC00-1]
 gi|120587526|gb|ABM30966.1| two component transcriptional regulator, winged helix family
           [Acidovorax citrulli AAC00-1]
          Length = 236

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 65/226 (28%), Positives = 112/226 (49%), Gaps = 10/226 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   +   L+ E + V+      +G+      + D ++LDLGL D  G  ++R
Sbjct: 10  VIEDEPQIRRFVRGALEEEGWQVHEAATLREGLSAAGTRQPDLLVLDLGLPDGDGVALIR 69

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH-- 122
            +R    + P+ +LS  +   DK+  L +GADDY++KPF   EL+AR+RA +RR R    
Sbjct: 70  DVRGWS-AVPIIVLSARTDEADKIAALDAGADDYLTKPFGTGELLARVRANLRRPRPATG 128

Query: 123 -------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  A+ +   GD+ V+  A+ V   G  +HLT  EY+M+ +L       +T+   L
Sbjct: 129 QGLQAEAAEPVFRFGDIEVDRGARLVRRAGTVVHLTPTEYRMLTVLVANAGRVITQRQLL 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++      +   + +++  LR+KL        ++ T  G GY L
Sbjct: 189 REVWGPARSDQSHYLRIYMGHLRQKLEADPAQPRHLLTETGVGYRL 234


>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
 gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LL+ED+K + + I  +L   N+ V     G++ +EL      D I+LDLGL D+ G EV
Sbjct: 7   VLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGLPDMDGIEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R      P+ ++S      +KV  L  GADDYI+KPF   EL+ARIR  +R  +  
Sbjct: 67  LKTIRGWSG-IPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQVT 125

Query: 123 ----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +++   GDL+++ D + V +  + +H T  EY+++E+L+      +T +  +  +
Sbjct: 126 VDVPERTIFSVGDLTIDFDKRLVTLNNNPVHFTPIEYKILEILTQYPGKVVTYDQIIKDI 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           +      E + + V +  +R+K+        YI T  G GY   + 
Sbjct: 186 WGP-YTNENQTLRVNMANIRRKIEKNPAEPKYILTEVGVGYRFVDE 230


>gi|226364471|ref|YP_002782253.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
 gi|226242960|dbj|BAH53308.1| OmpR family two-component response regulator [Rhodococcus opacus
           B4]
          Length = 238

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 72/221 (32%), Positives = 116/221 (52%), Gaps = 9/221 (4%)

Query: 13  AHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKIS 72
             S+E  L+   F V     G D + +      DA++LD+ +  I G  V+ ALR     
Sbjct: 19  RTSLERGLRLSGFTVLTAVDGADALRVVSEQRPDAMVLDMNMPVIDGTGVVTALRAMSND 78

Query: 73  TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--------RGHAQ 124
            P+C+LS   +++D++ GL+SGADDY+ KPF   EL+ARIRA++RR            A 
Sbjct: 79  IPICVLSARDTVDDRISGLESGADDYLVKPFVLAELIARIRAMLRRHGTTTAAPADSQAT 138

Query: 125 SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDE 184
             I  G L +   A+ V + G  + LT +E++++E+L+      L++E  L  ++     
Sbjct: 139 PPIRVGALEIRTSARRVFMAGEEVTLTKREFELLEVLARNVGIVLSRERLLELVWGYDFV 198

Query: 185 PEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            +  ++DVF+  LR+K     G    + TV G G+VLRE +
Sbjct: 199 ADTNVVDVFVGYLRRKFE-VGGQPRILHTVRGVGFVLREPS 238


>gi|182419360|ref|ZP_02950612.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237666528|ref|ZP_04526513.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182376691|gb|EDT74263.1| alkaline phosphatase synthesis transcriptional regulatory
           proteinphoP [Clostridium butyricum 5521]
 gi|237657727|gb|EEP55282.1| alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 226

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 9/228 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+IL+++D+K++ + I + L+ E + V ++  G D IE  +    + +ILD+ L DI G 
Sbjct: 1   MKILVVDDEKSIVNLIRMNLELEGYQVVISMNGIDAIEKFETERPELVILDIMLPDISGH 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           EV+R  +      PV +L+  S I DK+ GLQ GADDYI+KPFN  EL+ RI+AI +R  
Sbjct: 61  EVIRKFQKIDSEIPVIMLTANSQINDKLLGLQLGADDYITKPFNSIELMLRIKAITKRIN 120

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                +    +      + V  D + V + G  I  T KE+  + L+    N   T+E  
Sbjct: 121 KKYNGKKENNNEFKIKGIRVLKDERKVFIDGEEIIATYKEFDTLVLMMENCNKVFTREKL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  ++    E   + +D+ I +LRKKL   +     ++T++G GY   
Sbjct: 181 LKRVWGYEFEGNTRAVDILIQRLRKKLGVYS---ECLKTIYGVGYRFE 225


>gi|157374120|ref|YP_001472720.1| two component transcriptional regulator [Shewanella sediminis
           HAW-EB3]
 gi|157316494|gb|ABV35592.1| two component transcriptional regulator, winged helix family
           [Shewanella sediminis HAW-EB3]
          Length = 237

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 122/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V V   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEVERRGDTVLTRLISYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSNEDQIKGLELGADDYVVKPVDPALLIARINNLLRRNAK 127

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++   + + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPKVESHCLSFGKLSIDPHTQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +   + + + IDV + +LRKKL +       I+TVWG+GY+    A 
Sbjct: 188 LNIDFDGKDRKIDVRVSRLRKKLGDNIETPFRIKTVWGQGYLFAPEAW 235


>gi|329896334|ref|ZP_08271457.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
 gi|328921858|gb|EGG29228.1| two component transcriptional regulator, winged helix family [gamma
           proteobacterium IMCC3088]
          Length = 228

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 118/222 (53%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   +   L   +F         +       Y  D I+LDLGL D  G 
Sbjct: 1   MRVLVVEDEPRLREGLVKSLHQSSFACVEAGSATEAQYSVDNYPCDLILLDLGLPDGEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R  R   +  P+ IL+  +  +DKV GL++GADDY++KPF  EE+VARI+  +RR  
Sbjct: 61  ALVRRWRDQGLDLPIIILTARADWQDKVSGLEAGADDYVTKPFRVEEVVARIKVALRRVG 120

Query: 121 GHA-QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           G A +     G +++N DA+ V V    + LT  E+ ++ LL+       +K     HLY
Sbjct: 121 GRATERSDFVGGVTINFDARRVWVGKQELSLTSFEFNLLALLAQSPGAVRSKADLAEHLY 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           D  ++ E  +++V + +LRKK ++A      IETV G GY  
Sbjct: 181 DADEDRESNVLEVLVGRLRKKFASAMPD-VVIETVRGSGYRF 221


>gi|228924486|ref|ZP_04087689.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228835175|gb|EEM80613.1| Two-component response regulator [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 238

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 8/210 (3%)

Query: 19  MLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPVCIL 78
            L+ ENF V     GE  ++  +    D  I+D+ +  + G+++++ +R   +  P+ IL
Sbjct: 21  FLEMENFFVVEASNGEVALKCLEENHIDLAIVDIMMPKMDGYQLIKKIRET-LQFPILIL 79

Query: 79  SGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA-------QSLIVTGD 131
           S  S   DK+ GL  GADD+I+KPF+  E++AR++A +RRS           +  I  GD
Sbjct: 80  SAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYEFNDKAVEGKEKQIHMGD 139

Query: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIID 191
           L ++  +  +      I L+  EY+++ L         TK+     ++      +   I 
Sbjct: 140 LVLDHHSCILYKSSESISLSATEYKILALFMEEPGRIFTKKQIFESVWSDYYCADDNTIM 199

Query: 192 VFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           V I +LR+KL ++     YI+T+ G GY  
Sbjct: 200 VHISRLREKLEDSPKNPVYIKTIRGLGYRF 229


>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
           43243]
          Length = 240

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/236 (33%), Positives = 128/236 (54%), Gaps = 18/236 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ +A  +EL L  E +     D G  G+E  +  E D ++LD+ L ++ G EV
Sbjct: 5   ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELNGLEV 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           LR LR    + PV +L+   ++ DKV GL +GADDYI+KPF  EEL+ARIR  +++S   
Sbjct: 65  LRRLRRTS-NLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSMA 123

Query: 121 ------GHAQSLIVT--------GDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKN 166
                 G +   +          G + ++     V V  + + LT +E+ M++ L    +
Sbjct: 124 DGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENMD 183

Query: 167 TTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             L++E  L+ +       E  I+DV++  LR K+ +A G K  I+TV G GYV+R
Sbjct: 184 IVLSRETLLDKVCGYDYVGETNIVDVYVRYLRSKIDDAFGIK-LIQTVRGVGYVIR 238


>gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator
           [Candidatus Puniceispirillum marinum IMCC1322]
 gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family
           [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 230

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/226 (29%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI L++DD+ +  S+ LML+SE F+V   + GE  ++       +  +LD+ +  + G E
Sbjct: 4   RIALVDDDQNILTSVSLMLESEGFDVDCYNDGEAALQGMARQPVELAVLDIKMPRMDGVE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ +R      PV  L+      D+  G   GADDYI+KPF++  L+ARIRA++RR+  
Sbjct: 64  LLQKIR-KNSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRRATE 122

Query: 122 -----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                   ++I  GDL ++ D      +G  + LT  E+ +++ L+ R      ++  ++
Sbjct: 123 GVMDTAGPNVIHQGDLVMDPDRHLCSWKGEEVKLTVTEFLILQALASRPGMVKNRDQLMD 182

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             Y      + + ID  I +LR+K+       + IET++G GY  +
Sbjct: 183 AAYGESIFLDDRTIDSHIKRLRRKIRAHDNAFDGIETLYGIGYKYK 228


>gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
 gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM
           4541]
          Length = 224

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++ED+  L H + + LK  +  V   +  ++          D  ++DLGL D  G 
Sbjct: 1   MRILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++  R   ++ P+ +L+   S ++KV+ L SGADDY++KPF  EELVAR++A++RR+ 
Sbjct: 61  SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  ++   +  ++L  K   V G  + LT  EY +IE L       ++K+  +  LY 
Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  E   IDV + +LRKK+      +  I TV G+GY    N
Sbjct: 181 DAELRESHTIDVLMGRLRKKIQQ-FHEQEVIVTVRGQGYRFDVN 223


>gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
 gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149]
          Length = 224

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 4/223 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD  +   ++  L+  ++       G +   L     +  ++LDL L  I G EV
Sbjct: 4   ILIVEDDMNINGLLKEALEKADYLCTQAFSGTEARMLLAMNRYSVVLLDLMLPGISGEEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           L+ +R    +TPV IL+   +I+DKV  LQSGADDY++KPF+ +E++AR+   +RR  G 
Sbjct: 64  LQEIRKQG-NTPVIILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEGS 122

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIH-LTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            ++  +V   L ++ +   V V    +  +T +E+ ++ELL        +KE    + ++
Sbjct: 123 FSEGNLVYQGLELDRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAWE 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E K +DV I  +RKK+ +    K YIET+WG GY L  
Sbjct: 183 EAYMGETKTLDVHISNIRKKIKSVTS-KEYIETIWGIGYRLHP 224


>gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 115/225 (51%), Gaps = 5/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L   +   L  E F       G+ G E      +DA+ILD+ L  + G E
Sbjct: 6   RILLIDDDADLGSMLTEYLAGEGFETTTILNGDTGAEAALSGAYDAVILDVMLPGLGGVE 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR +R A    P+ +L+      D++ GL+ GADDY+ KP    ELVAR+RA++RR   
Sbjct: 66  VLRRVRQAS-RIPIIMLTAKGDHVDRIVGLEMGADDYVPKPCYPRELVARLRAVLRRMAD 124

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
             +      +V G L +    + V   G  + LT  E+ ++E+L    +  ++K+     
Sbjct: 125 AGERPPGETLVQGKLKLLPPQRKVSWDGKPLDLTVSEFNLLEILLHEGDRVVSKDELSER 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                 EP  + +DV +  LR+KL  AAG +  IETV G GY +R
Sbjct: 185 ALGRPREPYDRSVDVHVSNLRQKLHAAAGDEICIETVRGIGYRVR 229


>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
 gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
          Length = 231

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 82/230 (35%), Positives = 121/230 (52%), Gaps = 9/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            ILLI+DD  L   ++ +L  E F+V   + GE+G+ L      D I+LD+ +  + G E
Sbjct: 3   HILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG-IDLILLDVMMPKLNGME 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+      D+V GL+ GADDY+ KPF+  EL+ARIRAI+RR++ 
Sbjct: 62  TLKRLRE-NWQTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQT 120

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
            +          I   D+ V    +    QG ++ LT  E+ ++         TLTKE  
Sbjct: 121 SSSNKASKSSDCIEYQDIQVYPGKQEAFCQGKQLDLTTTEFALLTHFVQNPGETLTKEAL 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +   R     + ID+ +  LRKKL   A GK+ I+T+ GRGY+L E 
Sbjct: 181 SLDVLGKRLAAFDRAIDMHVSNLRKKLPERADGKSRIKTLRGRGYLLVEE 230


>gi|317122193|ref|YP_004102196.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
 gi|315592173|gb|ADU51469.1| two component transcriptional regulator, winged helix family
           [Thermaerobacter marianensis DSM 12885]
          Length = 232

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 5/228 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++D+  +     L L+ + F+V             +      ++LDL L D  G +
Sbjct: 5   RILVVDDEPGIREICRLYLERDGFSVREAASVAGARAALQRESPALVVLDLMLPDGNGLD 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R L       PV  L+  +   D+V GL+ GADDY++KPF+  ELVAR+RA++RR+RG
Sbjct: 65  LCRELVDQG--VPVICLTARAEETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARG 122

Query: 122 HAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +    +  G  +V+L A+ + V    + LT KE+ ++ LL    +   T++  L  +
Sbjct: 123 PRAAAPVVVRFGRCAVDLAARRLLVDDREVPLTPKEFDLLALLVTHPHRVFTRQQLLEQV 182

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           +D     + + +DV + +LR+K+        Y++TVW  GY      +
Sbjct: 183 WDFAYAGDTRTVDVHVQRLRRKIEPDPQRPRYLKTVWSVGYRFDPEGE 230


>gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
 gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family
           [Afipia sp. 1NLS2]
          Length = 220

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 127/223 (56%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V     GED + L    ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDQRIASDVSRTLEASGYVVETVANGEDALFLGDTEDYGAIILDLGLPGMEGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRTNGRHMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GH  S++  G+++++     V  +G  I L+  EY+++  L   +   ++ +    ++Y 
Sbjct: 121 GHGSSIMSAGEITLDERQMKVTRRGVPITLSPLEYRLVAHLLRNRGRVVSPQEIDENVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E +   ++V + ++RKKL   A     IET  G GY++ E
Sbjct: 181 HGEEHDSNTLEVLVGRVRKKLGADA-----IETRRGFGYLMPE 218


>gi|197295431|ref|YP_002153972.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|195944910|emb|CAR57522.1| two-component regulatory system, response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 249

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 63/238 (26%), Positives = 115/238 (48%), Gaps = 9/238 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LL++DD  L   +    +       V     +     +      I+LDL +  + G  
Sbjct: 12  QVLLVDDDAELRDLLRRFFQQRGIEFSVLHDATNLARRLERERPAIIVLDLMMPGVDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR +  + PV +L+  +   D+V GL+ GADDY+ KPF  +EL+ARI+A++RR   
Sbjct: 72  ALKQLRASGDTIPVIMLTARAEGIDRVLGLELGADDYLGKPFMPQELLARIQAVLRRQGP 131

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                     +    G   ++   +T+  +G  + LTG EY ++E+L+     TL++   
Sbjct: 132 PRTTAVQEKPAPFRFGRFELDFATRTLLCEGTPVKLTGGEYALLEVLASHPMETLSRTRL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN--AKDETC 230
           +  L+    E   + IDV + +LR+ + +       ++TV G GY+   +  A +E+ 
Sbjct: 192 IELLHGPDAEVTERGIDVPVWRLRRLIEDDPSNPRRLQTVRGIGYMFIPDHPADEEST 249


>gi|294139579|ref|YP_003555557.1| transcriptional regulatory protein RstA [Shewanella violacea DSS12]
 gi|293326048|dbj|BAJ00779.1| transcriptional regulatory protein RstA, putative [Shewanella
           violacea DSS12]
          Length = 237

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/228 (30%), Positives = 123/228 (53%), Gaps = 4/228 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+LL+EDD  LA+ I   LKS   +V +   G+  +     Y+ D I+LD+ L  + G  
Sbjct: 9   RVLLVEDDIRLANLIVDYLKSHGMHVEIERRGDTVLTRLINYKPDIILLDIMLPGMDGLT 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   L     + P+ ++S + S ED+++GL+ GADDY+ KP +   L+ARI  ++RR+  
Sbjct: 69  LCEKL-PDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLIARINNLLRRTAK 127

Query: 122 HA---QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  G LS++  ++ + +    + LT  E++++ LL+ +    L+++    +L
Sbjct: 128 PPKVESHCLSFGKLSIDPHSQAIRLGDIEVDLTSHEFELLWLLASQAGQVLSRQYIYQYL 187

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            +   + + + IDV I +LRKKL +       I+TVWG+GY+    A 
Sbjct: 188 LNIDFDGKDRKIDVRISRLRKKLGDNIETPFRIKTVWGQGYLFAPEAW 235


>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
 gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
          Length = 227

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 7   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 67  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 125

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 126 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLGLFLQNTNRAYSRDDLIEKIWGY 183

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 184 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 225


>gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisB18]
 gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisB18]
          Length = 221

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 81/220 (36%), Positives = 127/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +E  L++  + V     GE+        ++ AI+LDLGL  + G 
Sbjct: 1   MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R     TPV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  AVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A S+I  GD++++     V+V G  ++L+  EY++I  L L +   +++     ++Y 
Sbjct: 121 GQACSVISVGDVTLDERQMKVDVGGVPVNLSPLEYRLIAFLFLHRGRVVSQAELSENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D  +   I+V I ++RKKL     G   IET  G GY+
Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYL 215


>gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris
           BisA53]
 gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris BisA53]
          Length = 221

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 80/220 (36%), Positives = 127/220 (57%), Gaps = 5/220 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++EDD+ +A  +   L++  + V V   GE+        ++ AIILDLGL  + G 
Sbjct: 1   MRVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDYAAIILDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R      PV IL+   S  ++V G+ +GADDY+ KPF  EEL+AR+R+IVRRS 
Sbjct: 61  TVLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSV 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A SLI  G++S++     V+ +G  ++L+  EY+++  L+L +   +++     ++Y 
Sbjct: 121 GQASSLIHVGEISIDERQMRVDRRGVPVNLSPLEYRLVSYLALHRGRVVSQHELSENIYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
             D  +   I+V I ++RKKL     G   IET  G GY+
Sbjct: 181 NEDAHDSNAIEVLIGRVRKKL-----GSELIETRRGFGYI 215


>gi|119715846|ref|YP_922811.1| two component transcriptional regulator [Nocardioides sp. JS614]
 gi|119536507|gb|ABL81124.1| two component transcriptional regulator, winged helix family
           [Nocardioides sp. JS614]
          Length = 232

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 124/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK LA ++   L+SE   V V   G DG        +DA+++D+ L  + G 
Sbjct: 1   MRILVVEDDKQLAAALRRGLESEGHAVDVALTGTDGEWYASENTYDAMVVDVMLPGLTGD 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +    R +   TP+ +L+  S  E + R L +GADD++SKPF+   L AR+RA++RR  
Sbjct: 61  ALCARRRESGDWTPILMLTARSGPEQEARALDAGADDFLSKPFSFMVLTARLRALLRRDS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
               +++  GDL ++     V      I LT K++ ++E +    +  L+K M L H++D
Sbjct: 121 RERPTVLEVGDLRLDPALHRVWRGDTSIDLTPKQFSLLEFMMRHADHILSKSMILEHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +    I++V++ +LR+++ +    ++ ++TV   GY + ++
Sbjct: 181 FSYDGHPNIVEVYVRQLRQRI-DEPFQRSSLQTVRLVGYRVVDD 223


>gi|254495848|ref|ZP_05108760.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
 gi|254355005|gb|EET13628.1| DNA-binding response regulator [Legionella drancourtii LLAP12]
          Length = 247

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 11/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+I+DD+ +   I   L   +F       G +  +L +   FD IILD+ L  I G ++
Sbjct: 13  ILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGLDL 72

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + +R    + P+ +LS  +SI D+V GL+ GADDYISKPF+  EL+AR++A +RR++G 
Sbjct: 73  CQMIRQTH-TMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQGD 131

Query: 123 AQ---------SLIVTGDLSVNLDAKT-VEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        I      ++ +  + ++     I L+ +EY+M+ +        L ++
Sbjct: 132 LSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILNRD 191

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             ++ LYD   + + + IDV I +LRKK+         + T+ G GY  +
Sbjct: 192 QLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQFK 241


>gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17]
 gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17]
          Length = 229

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 87/223 (39%), Positives = 125/223 (56%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD++ A  I   L+ E F +     G DG+       +D IILD  L  + G  
Sbjct: 4   RILLIEDDRSTADYIANGLREEGFLIDHAANGRDGLFHATDGSYDCIILDRMLPGMDGMA 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            L A+R A I++PV ILS +SS ED+V GL SG+DDY++KPF   EL+AR+R ++RR   
Sbjct: 64  ALAAIRAAGIASPVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGSV 123

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +    Q+ +V  DL ++L A  V   G  I L  +EY+++E L    +  +T+ M L  +
Sbjct: 124 TTNAPQTKLVCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +D   +P   + DV I +LRKK+         + TV G GY L
Sbjct: 184 WDFHFDPNTNVTDVHISRLRKKIDEGFARP-LLHTVRGSGYKL 225


>gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 223

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 124/224 (55%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ L   ++  L    +   V   GE+ ++L     +D IILD+ L    GF
Sbjct: 1   MKVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +L+  S I+D+V+GL  GA+DY++KPF+ +EL AR+R+++RR  
Sbjct: 61  EVLRDIRQFNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              ++ I    ++ +   +    +G  + LT KE  +IE L L ++  ++ E  ++H++D
Sbjct: 121 IQEETEITINGITFDTVKRIATFKGKDLGLTAKETGIIEYLFLNRDRYVSVEELMDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     + V +  LRKK+    G  NYIE   G+GY + E 
Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKVTGE-NYIENAIGKGYKIYEE 223


>gi|302559181|ref|ZP_07311523.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
 gi|302476799|gb|EFL39892.1| two-component system response regulator TcsR4 [Streptomyces
           griseoflavus Tu4000]
          Length = 260

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 8/220 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD+ +A S+E  L+   + V     G   +        D ++LDLGL DI G E
Sbjct: 42  RVLVVEDDRGIAESLERGLRQAGYAVEGVRTGRAALAAAT---PDVVLLDLGLPDIDGVE 98

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR       +  ++      D+V  L  GADDY+ KPF   EL+ARIRA++RR R 
Sbjct: 99  VCRRLRARS-DAAIIAVTARGEEADRVVALDEGADDYLVKPFGLAELLARIRAVLRRRRP 157

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
               L+  G L+++   + V V G  + LT KE+ ++E L+      ++++  L   +D 
Sbjct: 158 AEPELVRHGPLTLDPRTRQVSVDGRVVPLTPKEFGILECLAADPGRVVSRQQILERAWDA 217

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 K++DV +  LR+KL    G    IETV+G G+ L
Sbjct: 218 HWYGPTKVLDVHVAALRRKL----GVPGLIETVYGHGFRL 253


>gi|183985285|ref|YP_001853576.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
 gi|183178611|gb|ACC43721.1| two-component transcriptional regulatory protein TcrX
           [Mycobacterium marinum M]
          Length = 235

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 125/224 (55%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G EV
Sbjct: 12  VLVVDDEPVLAEMVSMALRYEGWNIATASDGASAIASARAERPDVVVLDVMLPDMSGLEV 71

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR    + PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 72  LHRLRKENPALPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 131

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  I LT  E++++  +       L+K   L+ ++
Sbjct: 132 TVDSGAQLVVGDLVLDEDSHEVTRAGEPISLTSTEFELLRFMMRNSKRVLSKAQILDRVW 191

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    I++++I  LRKK+ N  G +  I T+ G GYVL+ 
Sbjct: 192 SYDFGGRSNIVELYISYLRKKIDN--GREPMIHTLRGAGYVLKP 233


>gi|158425689|ref|YP_001526981.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
 gi|158332578|dbj|BAF90063.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
          Length = 233

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L++E + +     G   ++  K    D  ILD+ +  + G E+
Sbjct: 4   IALVDDDRNILTSVSIALEAEGYRIDTYTDGASALDGFKTNPPDLAILDIKMPRMDGMEL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR LR  K   PV  L+      D++ GL+ GADD+I KPF++  LV R++A++RR    
Sbjct: 64  LRRLRQ-KTDMPVIFLTSKDEEIDELFGLKMGADDFIKKPFSQRLLVERVKAVLRRVGAK 122

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                    +  ++  G L ++ +  T   +G  + LT  E+ +++ L+ R     ++  
Sbjct: 123 DGTAPREVDSAKVLERGLLRMDPERHTCTWKGEPVTLTVTEFLILQALAQRPGVVKSRNA 182

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            ++  YD +   + + ID  I +LRKK  +A    + IET++G GY  +E+
Sbjct: 183 LMDAAYDDQVYVDDRTIDSHIKRLRKKFKSADDNFDMIETLYGVGYRFKES 233


>gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
 gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp.
           Marseille]
          Length = 246

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+       +   G     + +    D I+LDL L    G  +
Sbjct: 7   ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66

Query: 63  LRALRVAK-ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R LR  K  + PV +L+  +   D++ GL+ GADDY+SKPF   EL ARIR+++RR+R 
Sbjct: 67  CRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRARM 126

Query: 121 -------GHAQSLIVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                        +V GD  ++      ++ QG  + L+G EY+++ +        LT++
Sbjct: 127 LPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRVLTRD 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN       +P  + ID+ I +LR++L + A    YI+T+   GYV 
Sbjct: 187 QLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235


>gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72]
 gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
          Length = 252

 Score =  245 bits (626), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 111/232 (47%), Gaps = 13/232 (5%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+++DD+ +   +   L+ +         G +     + +  D I+LDL L    G  +
Sbjct: 8   ILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLTL 67

Query: 63  LRALRV--AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            R LR   +  +TP+ +L+      D++ GL+ GADDY+ KPF   EL AR+RAI+RR+R
Sbjct: 68  CRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRAR 127

Query: 121 GHAQS----------LIVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
               +           +      ++  +   ++ QG  + L+G EY+M+ +        L
Sbjct: 128 ALPPNLDTQPQAQARELRFAQWRLDTVNRHLIDAQGTVVPLSGAEYRMLGVFLAHPQRVL 187

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +++  +        +   + ID+ + +LR++L + A     I+TV   GYVL
Sbjct: 188 SRDQLMELTQGREADVFDRSIDLMVSRLRQRLGDNAREPAIIKTVRNEGYVL 239


>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
 gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
          Length = 230

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 62/226 (27%), Positives = 113/226 (50%), Gaps = 10/226 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ +D++ +   ++++L  + + V     GE+ IEL        +ILD+ +    G  
Sbjct: 4   RILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDE-SIGLVILDVEMPKKSGIV 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V   +R      P+  L+      DK  G  +G DDYI+KPF+  +L+ R++A++RR+  
Sbjct: 63  VCSEIRQKSF-VPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121

Query: 122 H-------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
           +        +  I  GDL V+L++  V ++G  + LT  EY+++ LL   +    + E  
Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYEILRLLITHRKKIFSMEQI 181

Query: 175 LNHLYDGRDEP-EVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
              +++   +      + V +  LRKK+   +    YI+T WG+GY
Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGY 227


>gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 60/222 (27%), Positives = 109/222 (49%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M ILL +DDK +   +   L+ E F V+  + G+   E+ +       I+D+ +  + G+
Sbjct: 4   MHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIMMPFVDGY 63

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   +R      PV +L+    + DK +G  SG DDYI KPF   E++ R++A++RR +
Sbjct: 64  TLCEEIRKYH-DIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQ 122

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             +  +I     +++     V+  G  I L  KE++++  L+     T ++E  +  ++ 
Sbjct: 123 MLSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E + + +DV + +LR + S        I TV G GY L 
Sbjct: 183 MDFEGDERTVDVHVKRLRDRFSKRTDDFQ-ITTVRGLGYKLE 223


>gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 1   MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS    +  I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 219


>gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
 gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like)
           [Lentisphaera araneosa HTCC2155]
          Length = 229

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 118/228 (51%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   ++L L  E ++V  T  G   I++ + +  D IILD  L  + G +
Sbjct: 4   RVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMDGND 63

Query: 62  VLRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           +   L+  K +   P+ +LS  +   D++ G++ GADDYI+KPF+ + L A++ A ++R+
Sbjct: 64  ICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIKRA 123

Query: 120 RG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  H + ++    L +N    ++  +   + LT  EY ++  L  +     T+E  
Sbjct: 124 AQNKDLSHDEDILRHEKLVMNKADFSITYEEQPVKLTAVEYNLLYFLCKKPGRVYTRERI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L  +         + +DV I  LR+K+    G ++YIETV G GY ++
Sbjct: 184 LEEIRGDDVIITGRTVDVHILSLRRKI---PGFESYIETVRGVGYRIK 228


>gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. 16M]
 gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330]
 gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str.
           9-941]
 gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus
           2308]
 gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19]
 gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457]
 gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6
           str. 870]
 gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3
           str. Tulya]
 gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str.
           513]
 gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str.
           686]
 gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M163/99/10]
 gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           B2/94]
 gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13]
 gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4
           str. 292]
 gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
           M292/94/1]
 gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1]
 gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94]
 gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9
           str. C68]
 gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99]
 gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1
           str. 16M]
 gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330]
 gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str.
           9-941]
 gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C
           terminal [Brucella melitensis biovar Abortus 2308]
 gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
           25840]
 gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
 gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
 gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19]
 gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
 gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC
           23457]
 gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
           A]
 gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
 gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
           16M]
 gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
 gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4
           str. 292]
 gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6
           str. 870]
 gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
 gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94]
 gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
 gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
 gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99]
 gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
 gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
 gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1]
 gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
 gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
 gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13]
 gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026]
 gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella
           abortus bv. 5 str. B3196]
 gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1]
 gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2]
 gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653]
 gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28]
 gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90]
          Length = 239

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/230 (28%), Positives = 114/230 (49%), Gaps = 10/230 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE + V     G   ++       +  I D+ +  + G E+
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR LR  K   PV  L+      D++ GL+ GADD+I+KPF++  LV R++A++RR    
Sbjct: 70  LRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAAR 128

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                  G     +  G L ++ +  T   +G  + LT  E+ ++  L+ R     +++ 
Sbjct: 129 DGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDA 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++  YD +   + + ID  I +LRKK          IET++G GY  RE
Sbjct: 189 LMDAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 238


>gi|87125570|ref|ZP_01081415.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
 gi|86166870|gb|EAQ68132.1| two component transcriptional regulator, winged helix family
           protein [Synechococcus sp. RS9917]
          Length = 234

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD  L   +   L++E  +      G++ +   +   FD ++LD GL D  G E+
Sbjct: 4   LLVVDDDPELLRFLLDDLQAEGLSCTGVLNGQEALMRLRQERFDLVVLDWGLPDFAGTEI 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            + LR +   TPV +L+  +   D+V  L  GADD++SKPF   EL AR+RA++RR    
Sbjct: 64  CQRLRRSGDQTPVLMLTARADTGDRVMALDMGADDHLSKPFEIAELHARVRALLRRGHYQ 123

Query: 123 AQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                   +  GDL++ L  + V      I+L+ +E+ ++  L  R    + ++  L+ +
Sbjct: 124 QHRSDGDCLQLGDLTMALLTRQVRRGERTINLSQREFDLLAFLLRRAGEVIPRQEILDGV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +      +   +DV++  LR+KL  ++     + TV G G++ RE A+ E 
Sbjct: 184 WGSPFVGDPNTLDVYVGYLRRKLE-SSDQPRLLHTVRGVGFMAREMAQQEP 233


>gi|303241326|ref|ZP_07327831.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
 gi|302591165|gb|EFL60908.1| two component transcriptional regulator, winged helix family
           [Acetivibrio cellulolyticus CD2]
          Length = 229

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/223 (30%), Positives = 109/223 (48%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD AL++ I L +K E F        +   +     +FD IILD+ L D  G +
Sbjct: 3   QILIVEDDVALSNGIVLAMKKEGFEFIQCFDKKSAEKEFACQKFDLIILDINLPDGSGLD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
             + +R      PV  L+      D V G + GA+DYI+KPF+   L ARI A +R+   
Sbjct: 63  FCQIVR-NSSDVPVIFLTANDMEIDVVTGFEIGANDYITKPFSLAILRARILAQLRKPTE 121

Query: 122 HAQS-LIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY- 179
             +S       +  + DA      G  I L+  E +++ +L   +   LT++  ++ ++ 
Sbjct: 122 KTKSGKYTVNGIYFDFDAMLFTKNGKEIELSKTEQKLLRILLENRGNILTRDTLIDRVWS 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           DG D      + V I +LR KL +      YI+TV+G GY  +
Sbjct: 182 DGADFVNENALSVTIRRLRNKLEDDPSQPVYIQTVYGMGYTWK 224


>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
           fluorescens SBW25]
 gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
 gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
           fluorescens SBW25]
 gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
          Length = 227

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 122/224 (54%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +  GDLS +LD   V  +G  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRALQVGDLSYDLDTLEVTREGRLLKLNPVGLKLLAVLMQKSPHVLRREILEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  ++TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFAKPLLQTVHGVGYRLAE 222


>gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           EO147]
 gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
           C6786]
          Length = 241

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD+ L   +   L  +   V V        +  +    D I+LDL +  + G  
Sbjct: 4   QILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVDGLT 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            LR LR A    PV +L+  +   D++ GL+ GADDY+ KPFN  EL+AR +A++RR R 
Sbjct: 64  ALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRRRRA 123

Query: 122 HAQ-------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                          G   ++  A+T+ V G    L+  E+ ++++       TLT+E  
Sbjct: 124 TPSAAAPEQREPYAFGRFVLDFQARTLSVDGKPATLSSSEFALLKIFVNHALRTLTRERL 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L  L+    +   + IDV + +LR+ L        +I+TV GRGYV   N +
Sbjct: 184 LELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVPNGE 235


>gi|312978124|ref|ZP_07789869.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
 gi|310895099|gb|EFQ44168.1| phosphate regulon response regulator PhoB [Lactobacillus crispatus
           CTV-05]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 118/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   + G   ++       D +ILDL L D  G ++
Sbjct: 4   IWCVEDDESIRKIEMYTLESMNFKVRGFEDGTTFVKALAEKHPDLVILDLMLPDEDGSDI 63

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L+ LR    +   PV I S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LKKLRGNSSTEELPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V V G  I LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 HKKEDKIEKDGIKILLKRHEVYVDGQEIELTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+ LS A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQTLSEAGS---HIETVRGVGYRYHE 223


>gi|74317305|ref|YP_315045.1| two component transcriptional regulator [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056800|gb|AAZ97240.1| Two component Transcriptional regulator, Winged helix family
           [Thiobacillus denitrificans ATCC 25259]
          Length = 232

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 2/228 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD+ L   +   L     + +                 D I+LD+ L    G  
Sbjct: 5   RILVVDDDQELLDMVCRYLGENGLDAHAAADSVHMDAWLASSRPDLIVLDVMLPGEDGLS 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-R 120
           V++ L+ +++  PV +LS  SS  D++ GL+ GADDY++KPF+  EL+ARI A +RRS  
Sbjct: 65  VVKRLK-SRLDVPVLMLSARSSDVDRILGLEMGADDYLTKPFHPRELLARIHARLRRSPA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  +  G   ++   +     G  + L+  ++ ++ LL    +  L +   ++    
Sbjct: 124 PRQEDALEAGSFRLDFVRRDAYKHGQPLALSTADFSLLSLLMRHSHRVLDRTQLVDLASA 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
               P  + IDV + +LR+K+ +      YI TV G GY+   +  DE
Sbjct: 184 MERMPFNRSIDVRVARLRRKIEDDPAQPRYIRTVRGSGYLFVPDGGDE 231


>gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris
           CGA009]
 gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
 gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris CGA009]
 gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family
           [Rhodopseudomonas palustris TIE-1]
          Length = 240

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 9/232 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD+     I   L++ N NV     G +       +  D ++LD+ L    G  +
Sbjct: 8   ILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
            R +R    + P+ +L+      D++ GL+ GADDY+ KPFN  EL+ARIR+++RR    
Sbjct: 68  CRKIRA-NSALPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRRQASA 126

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
              S     + +      ++   + +    G  + +T  E+ +++ L  R    L++E  
Sbjct: 127 VTASATPGATTLGFLGWRMDCRRRELRNPDGALVAMTSAEFDLLQALCERAGRVLSREAL 186

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
           L+  +        + IDV I ++R+K+         I+TV   GYV     +
Sbjct: 187 LDLTHGRNVGAFERSIDVLISRIRRKIEPDPREATLIKTVRAGGYVFTPEVE 238


>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
 gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
          Length = 227

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V  QG  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRSLQVADLSYDLDTLEVTRQGRMLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  + TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFEKPLLHTVHGVGYRLAE 222


>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
 gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
           [Streptomyces sp. ACTE]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G + ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
 gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
           protein [Sphingomonas sp. SKA58]
          Length = 240

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 63/233 (27%), Positives = 106/233 (45%), Gaps = 9/233 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +LL++D++++   +   L    F V   D   +          D +ILD+ +    G  
Sbjct: 7   HLLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIMMPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R +R      PV +L+  S   D++ GL+ GADDY+ KPF+  ELVARI+ I RR   
Sbjct: 67  LCRHIRETS-EIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAS 125

Query: 119 -----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                +     +    G L  + +   ++ +G  + L+  EY ++   + R N  L+++ 
Sbjct: 126 GGQRVTAPDGATYAFAGWLLKSQERTLIDSEGVSLPLSTAEYNLMLAFATRPNQVLSRDQ 185

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
            L+           + ID  I +LRKK+         I+TVWG GY L    +
Sbjct: 186 LLDITQGREANAFDRAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTLSAEVR 238


>gi|332799755|ref|YP_004461254.1| winged helix family two component transcriptional regulator
           [Tepidanaerobacter sp. Re1]
 gi|332697490|gb|AEE91947.1| two component transcriptional regulator, winged helix family
           [Tepidanaerobacter sp. Re1]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILL+EDD +L   +  +LK + F + +     +   +    ++D +ILD+ L D  GFE
Sbjct: 3   RILLLEDDLSLIDGLSRLLKRQGFELDIARTVREANTIWADGKYDLLILDVSLPDGSGFE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V + +R      P+  L+      + V GL  G DDYI+KPF    L++RI A++RR + 
Sbjct: 63  VCQKVRQVS-KVPIIFLTASDEEMNIVTGLDIGGDDYITKPFKLGVLISRINALLRRVKN 121

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G A + I++  + V L    V   G  + LT  EY+++ LL    N  L+KE  L+ L+
Sbjct: 122 FGTADTEIISNGIKVLLLQGQVYKDGQLLDLTTAEYRLLCLLMQNPNIILSKEKILDKLW 181

Query: 180 DGR-DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           DG     +   + V+I +LR K+ N  G    + TV G GY  
Sbjct: 182 DGEGSYVDDNTLAVYIRRLRMKIENNPGDPQMLLTVRGMGYKW 224


>gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
 gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family
           [Streptomyces cf. griseus XylebKG-1]
          Length = 250

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 20/234 (8%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++EDD  +  +++L L+   + V V   G  G+E  +    D +ILD+ L ++ G  +
Sbjct: 21  VLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVMLPELDGIGL 80

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
            R +R      PV ++S      D V GL++GADDY+ KP +   +VARIRA++RR+   
Sbjct: 81  CRRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139

Query: 120 -----------RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTT 168
                       G A  ++V GDLSV+     V   G  + LT  E +++   +    + 
Sbjct: 140 PDPEGPAAAGRSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199

Query: 169 LTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           L +   L  ++D   E + +++D+ + +LRKK+     G   IETV G GY L 
Sbjct: 200 LDRRRLLREVWDYGWEGDTRVVDLCVLRLRKKI-----GSGRIETVRGFGYKLV 248


>gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
 gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
          Length = 255

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/221 (30%), Positives = 116/221 (52%), Gaps = 3/221 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED+  ++  ++  L+  NF V     GE+       +    ++LD+ L    G+ +
Sbjct: 32  ILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVMLPGRSGWSI 91

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG- 121
           L  +R  K S PV +L+ +  I++K+ GL  GADDYI+KPF  +E+VAR+ A++RRS+  
Sbjct: 92  LEYIRA-KSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQL 150

Query: 122 -HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                +   G L V+  A +V + G  +  T K+  +   L+  KN T T+E  +  ++ 
Sbjct: 151 IEGNHVKQFGSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTFTREQLIEQVWG 210

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E   + +D+ I ++R+ L N    +  I T  G GY L
Sbjct: 211 MDYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGYKL 251


>gi|255654521|ref|ZP_05399930.1| putative lantibiotic resistance two-component response regulator
           [Clostridium difficile QCD-23m63]
 gi|296449247|ref|ZP_06891033.1| response regulator [Clostridium difficile NAP08]
 gi|296880778|ref|ZP_06904727.1| response regulator [Clostridium difficile NAP07]
 gi|296261916|gb|EFH08725.1| response regulator [Clostridium difficile NAP08]
 gi|296428225|gb|EFH14123.1| response regulator [Clostridium difficile NAP07]
          Length = 230

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 9/229 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+I+D+  L   +E  LK++   V +   G+ GIEL    E D IILD+ +  + GFE
Sbjct: 3   KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIEL-SKNEPDLIILDIMMPKMDGFE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V +A+R   +  P+  LS   S  DK++GL  G DDY++KPF   EL+ARI A +RR + 
Sbjct: 62  VCQAIR-DDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREKR 120

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                  + +S +    L + +  + +++ G  I LT  EY ++ELL+L      ++E  
Sbjct: 121 SQYINEENKRSTLYFEKLCLYMKERAIKIDGKDIDLTKIEYDIVELLALHAGQVFSREQI 180

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              ++    E +   +   + K+R K S     K YI TVWG GY   +
Sbjct: 181 YEKVWGCDSEGDSSTVVERVKKIRAKFSAVTPEKEYISTVWGIGYKWNK 229


>gi|221200151|ref|ZP_03573194.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
 gi|221206696|ref|ZP_03579708.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221173351|gb|EEE05786.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
 gi|221180390|gb|EEE12794.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
          Length = 252

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCLEK 220


>gi|188580305|ref|YP_001923750.1| transcriptional regulator [Methylobacterium populi BJ001]
 gi|179343803|gb|ACB79215.1| two component transcriptional regulator, winged helix family
           [Methylobacterium populi BJ001]
          Length = 222

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+EDD+AL+  +   L++E F + +   G D   L +   +DA++LDLGL    G 
Sbjct: 1   MKILLVEDDEALSAELAKALRAEGFAIDLARNGIDAGHLGETETYDAVVLDLGLPQRDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A  + PV IL+      DKV G ++GADDY+ KPF  EELV R+RA++RR++
Sbjct: 61  SVLQDWRSAGRTVPVLILTARDGWSDKVAGFKAGADDYLVKPFRVEELVMRLRALMRRAQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +  + +  G L+ +    T E  G  + LTG E++++  L LR+   + +   +  +YD
Sbjct: 121 ANGAARVACGPLTFDAGLGTFEHHGLPLRLTGLEWRVLCALILRREAVVPRGQLIERVYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           G  E +   ++V I +LR+K++ AA     IETV G GY L
Sbjct: 181 GDAEVDSNSVEVIITRLRRKIAPAA-----IETVRGHGYRL 216


>gi|161523829|ref|YP_001578841.1| two component transcriptional regulator [Burkholderia multivorans
           ATCC 17616]
 gi|189351409|ref|YP_001947037.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221211333|ref|ZP_03584312.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
 gi|160341258|gb|ABX14344.1| two component transcriptional regulator, winged helix family
           [Burkholderia multivorans ATCC 17616]
 gi|189335431|dbj|BAG44501.1| OmpR family two-component system response regulator [Burkholderia
           multivorans ATCC 17616]
 gi|221168694|gb|EEE01162.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
          Length = 252

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ EDD  LA  +   L+   + V     G +         FD +ILDLGL  + G 
Sbjct: 1   MRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVEADTALSMQTFDLLILDLGLPKMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+ LR    + PV IL+   S++++V+GL  GADDY++KPF   EL AR+RA+ RR  
Sbjct: 61  DVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   +++  G L+ +   +        + L+ +E  ++E+L  R    ++KE  ++HL +
Sbjct: 121 GGGPTVVRHGSLAFDQVGRIAYANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
             +E     I+V++ +LRKK+  +      I TV G GY L +
Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEPSG---VRIATVRGLGYCLEK 220


>gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 5/225 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +   ++L L+ ENF V  T  G D I   +   FD IILD+ L +I GF
Sbjct: 1   MRILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++   +R+  +  PV  L+   ++ D++ GL+ GADDY++KPF  EEL+ RI  +++R+ 
Sbjct: 61  QICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKRTS 120

Query: 121 GHAQS---LIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
              ++   +   G   +N      E + G  I LT KE  +++LL  R+N  ++++  L 
Sbjct: 121 KSPENTPEIFEFGSNRINFITFEAEGILGKFI-LTKKEAMLLKLLIDRRNEVVSRQQILQ 179

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++     P  + ID FI K R+     +    +  ++ G GY  
Sbjct: 180 SVWGYDVYPSTRTIDNFILKFRRNFEGDSKNPRHFHSIRGVGYKF 224


>gi|323142343|ref|ZP_08077175.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413227|gb|EFY04114.1| response regulator receiver domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 10/226 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +ED++ +       L+S          G +   L +    + I+LD+ L D  G  +
Sbjct: 2   IFCVEDEQNICELEVYTLQSVGMEAQGCSSGRELFALLEKQVPELIVLDIMLPDEDGVSI 61

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           LR LR  K   + PV + +   S  DKV+GL SGADDYI+KPF   E+VARI+A++RR  
Sbjct: 62  LRRLRADKRYSNIPVIMATAKGSEFDKVKGLDSGADDYIAKPFGMLEMVARIKAVLRRCA 121

Query: 121 GHA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   +  I  G L V      V V G  + LT KEY+++           +++  L
Sbjct: 122 APRRDEDDEETIRIGRLEVKQMEHKVSVGGSEVVLTLKEYELLRKFLQHPGIVFSRDKLL 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           N ++      E + +DV I  LR+KL  A      IET+ G GY +
Sbjct: 182 NDIWGYEFSGETRTVDVHIRTLRQKLGEAG---ELIETIRGVGYRM 224


>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/225 (26%), Positives = 113/225 (50%), Gaps = 8/225 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++D+  + + I    + E + +     G D IE C+  +FD II+D+ + ++ GF 
Sbjct: 3   KLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKDQFDLIIMDIMMPNLDGFS 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            ++ +R    STPV +LS      D++ G ++G DDY+ KPF+ +EL+ R+ AI++R  G
Sbjct: 63  AVKKIREE-ASTPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKRVHG 121

Query: 122 HAQ----SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +     L ++  A+ V +      ++ KEY ++  +   +   LT+E  ++ 
Sbjct: 122 EEDKKHKDVYEYEGLRIDFTARKVFINEKESEMSPKEYVLLFYMVRNEGIALTREQLIHD 181

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           ++      + + +D  I  LRK L   +     I T+ G GY   
Sbjct: 182 VWGYDFYGDDRTLDTHIKLLRKSLGIYSST---IVTLRGVGYRFE 223


>gi|146341965|ref|YP_001207013.1| putative two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
 gi|146194771|emb|CAL78796.1| putative Two-component transcriptional regulator [Bradyrhizobium
           sp. ORS278]
          Length = 221

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 79/226 (34%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  L+  +   L++  + V  +  GE    L    ++ A++LDLGL  + G 
Sbjct: 1   MRVLLVEDDPRLSSDLSRTLQAAGYLVETSANGEQAWFLGDTEDYGAVVLDLGLPGMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL+  R A    PV IL+  +S  ++V G+ +GADDY+ KPF  EEL+AR+RAIVRRS 
Sbjct: 61  SVLKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           GHA  ++ +GDL+++     V + G  + L+  EY++I  L       + +     ++Y 
Sbjct: 121 GHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYLLRHNGRVVPQHELEENVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              + +   ++V I ++RKKL         IET  G GY++ E A+
Sbjct: 181 LGHDHDSNALEVLIRRVRKKLGAD-----IIETRRGFGYMIPETAE 221


>gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct]
          Length = 263

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+G+    G 
Sbjct: 27  MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 86

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 87  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 146

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 147 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 206

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 207 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 245


>gi|329121388|ref|ZP_08250013.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
 gi|327469678|gb|EGF15145.1| phosphate regulon response regulator [Dialister micraerophilus DSM
           19965]
          Length = 234

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 11/233 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   LK + F+V      E   +  +    D I+LD+ L    G  V
Sbjct: 4   IYCVEDDSGIRELVMYALKGQKFDVKGFAGAEKFYKELENKIPDLILLDIMLPGEDGLCV 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           L+ LR      + P+ +++  +S  D V+GL SGADDYI+KPF   EL++R+++++RRS 
Sbjct: 64  LKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPFGIMELISRVKSLLRRSN 123

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      ++   +  ++     V   G  + LT KE+++++ L + K   L+++  
Sbjct: 124 YGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVFLTLKEFKLLQYLVINKGIVLSRDRI 183

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
           +  ++D   E E + +D+ I  LRKK+ +      YI TV G GY L    +D
Sbjct: 184 MEAVWDSPIEIESRTVDMHIKGLRKKIKDCD---KYINTVRGIGYRLEHEKED 233


>gi|153938117|ref|YP_001390694.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|152934013|gb|ABS39511.1| DNA-binding response regulator [Clostridium botulinum F str.
           Langeland]
 gi|295318768|gb|ADF99145.1| DNA-binding response regulator [Clostridium botulinum F str.
           230613]
          Length = 223

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+IED+  LA+S+++ L+   F++ V++ G DG E     E+D I+LDL L DI G 
Sbjct: 1   MRLLIIEDNIELANSMKMGLEKMGFHIDVSNTGSDGEEKASINEYDVILLDLNLPDIDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L  LR   I TPV I++    +E    GL +GADDYI+KPF   EL ARI AI+RR  
Sbjct: 61  EILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRFH 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    +I  G+  +N   +TVE++   + L  KE+ ++E +  R    ++ E    H+YD
Sbjct: 121 GRTNPIINIGNFQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIYD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   ++ V I +L+KKLSNA+G +  I  + G+GYVL
Sbjct: 181 ENFDPFSSVLRVHIARLKKKLSNASGKEILI-NIRGKGYVL 220


>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 233

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 18/237 (7%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCK---FYEFDAIILDLGLTDIP 58
           RILL++D+  LA S+   L+ E + V V   G    EL +      ++ ++LD  L ++ 
Sbjct: 3   RILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELS 62

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           G  + + +R    +TP+  L+   +++D+V GL +GADDY+ KPF   EL+AR+RA++RR
Sbjct: 63  GLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122

Query: 119 SRGHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
           + G  +    +  GDL ++ + +    QG  IHL+ KE++++E         LT +    
Sbjct: 123 TTGTGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYE 182

Query: 177 HLYDGRDEPEVKIIDVFI------CKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            ++ G D P   ++   +                 G    I  V+G+GY     A D
Sbjct: 183 QVWAGEDPPSSNVLAAQVRLLRRR-------LRLPGAAELIHAVYGKGYRFGPVAGD 232


>gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus]
          Length = 237

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 8/228 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I L++DD+ +  S+ + L+SE + V     G   ++       +  I D+ +  + G E+
Sbjct: 10  IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDGMEL 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           LR LR  K   PV  L+      D++ GL+ GADD+I+KPF++  LV R++A++RR    
Sbjct: 70  LRRLRQ-KSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVARR 128

Query: 119 ---SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                G     +  G L ++ +  T   +G  + LT  E+ ++  L+ R     +++  +
Sbjct: 129 HAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDALM 188

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  YD +   + + ID  I +LRKK          IET++G GY  RE
Sbjct: 189 DAAYDEQVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRFRE 236


>gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 115/223 (51%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D I+LD+G+    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIIVLDIGMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 219


>gi|222151313|ref|YP_002560469.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
 gi|222120438|dbj|BAH17773.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402]
          Length = 223

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 92/223 (41%), Positives = 136/223 (60%), Gaps = 4/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED+  LA  IEL L  E++ V V   GE G++     E+D I+LD+ L  + G E
Sbjct: 3   RILVVEDEANLARFIELELTHESYAVTVMYDGESGLQEALSTEYDCILLDIMLPKLNGLE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR  K  TPV +++      DKV GL  GADDYI KPF+ EEL+AR+RA++RR++ 
Sbjct: 63  VCRKLRREK-ETPVIMITAKGETYDKVIGLDYGADDYIVKPFDIEELLARLRALLRRNKN 121

Query: 122 H--AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              ++ L+V G+L ++ +A TV      I LT  E+++++LL++ K   +T+E  L  ++
Sbjct: 122 EDDSEHLLVVGNLQIDKEAFTVLCDHQLIELTKTEFELLKLLAMNKRHVMTREKVLTAIW 181

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              +E E  ++DV+I  LR KL    G    IETV G GYV+R
Sbjct: 182 GYDNEVETNVVDVYIRYLRNKLKP-FGQDQLIETVRGVGYVIR 223


>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
 gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sviceus ATCC 29083]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  +   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 121/224 (54%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI+L+ED+ +L+  +  +L+ E + V V + G   +        D I+LDL L  +PG E
Sbjct: 3   RIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGADLILLDLMLPGLPGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           V R +R    + P+ +L+   S  D V GL+ GADDY++KP++  EL+ARIRA++RR   
Sbjct: 63  VCREIRTRS-AVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121

Query: 120 -RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++  G + ++++  TVEV G  I +  KE++++ELL       LT+   ++ +
Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +      + K +DV I ++R K+         + TV G GY   
Sbjct: 182 WGSDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225


>gi|332654910|ref|ZP_08420652.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16]
 gi|332516253|gb|EGJ45861.1| DNA-binding response regulator MtrA [Ruminococcaceae bacterium D16]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 3/225 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD A+   +E +++S + +      GE  ++  +   FD I+LD+ L D+ GFE
Sbjct: 4   QVLIVDDDPAICKLLEKVMRSNDMDSQAVGSGEQALQALETRTFDIILLDVNLGDMEGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           VLR LR   I TPV I+SG +   D + GL  GADDY++KPF    L A+++A++RRSR 
Sbjct: 64  VLRRLRERGIKTPVIIISGRNEDYDSLYGLSLGADDYVTKPFRPVVLGAKVKALLRRSRE 123

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A   +  G    +            + L+ +E  ++ L     N   TK+M    +
Sbjct: 124 FSSAASQQLRCGPFRYDGATMRFFKGEEVLDLSSREGALLLLFLQHPNQVFTKDMLYERV 183

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      +   I V+I +LR K+        +I TV G GY    
Sbjct: 184 WGTAVAVDDNAIMVYINRLRGKIEPDRQHPVHIRTVRGLGYRFVP 228


>gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Ruminococcus bromii
           L2-63]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 83/224 (37%), Positives = 120/224 (53%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+IED++AL  +I   LK   ++V     G    EL    ++D ++LDL L    G 
Sbjct: 1   MRILVIEDERALCETIVRSLKRLAYSVDFCYDGNKANELLGIEKYDLVLLDLNLPGADGM 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR LR     T V ILS    + DKV GL +GA+DY++KPF+ EEL ARIR++ RR  
Sbjct: 61  TVLRTLRQTDRDTGVLILSARCEVADKVEGLDAGANDYLTKPFHLEELEARIRSLTRRRF 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                ++  G ++ +  A+     G  + LT KE  ++E L L +   +++E  L+H++D
Sbjct: 121 TQNNVVLNCGKVAFDTKARVAVADGQELSLTRKEIGILEYLLLNQGRPVSQEELLDHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              +     I V I  LRKKL  A G  + I    G GYV+ E 
Sbjct: 181 NSVDNFSNSIRVHISALRKKLRAALGY-DPIRNRIGEGYVMEEE 223


>gi|291527568|emb|CBK93154.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale
           M104/1]
          Length = 222

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+++     + LK+ N+ V   +  ++  +       D I+LD+ L D  G+++
Sbjct: 4   IYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYDI 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR        P+ +++  S+  D ++GL  GADDYI KPF+  EL+ R++A++RR+ 
Sbjct: 64  VRKLRKRPATQDIPIIMVTAKSTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLRRTA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL ++ +   V V    + LT KEY+++ LL   +   +T+E+ +  ++D
Sbjct: 124 KEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E + +D+ I  LR KL +       I+TV   GYV+ 
Sbjct: 184 TDFEGETRTVDMHIKTLRHKLGDYGS---RIKTVRNVGYVIE 222


>gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 236

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/231 (34%), Positives = 122/231 (52%), Gaps = 16/231 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++LLI+DD  LA  +   L+ E F +  T  GE G+   +  E+  IILD+ L D  GF 
Sbjct: 3   KVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTSGFN 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VL  LR    + PV +L+G     D+V GL+ GADDY+SKPF   EL+AR+RA++RR   
Sbjct: 63  VLSRLRGDS-AVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRRVGP 121

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        Q  I  G++ +N  A+ V +    +HLT  E+ +IE L+L     + 
Sbjct: 122 ERGDGDPQQPPRPQGDIKVGEILINRGAQQVTLSDAPVHLTSTEFGLIEQLALNLGNIVQ 181

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +E  +        + +  +++V +  LR+KL   A     I+T+ GRGY+L
Sbjct: 182 REDLMEKALGRDTDFDDYVLNVHMSNLRRKLGGHAS----IKTIRGRGYLL 228


>gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
 gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147]
          Length = 222

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/223 (34%), Positives = 118/223 (52%), Gaps = 7/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD  +A ++   LK + + V   + G           +D I+LDLGL    G 
Sbjct: 1   MRILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +VL+  R  + +TP+ IL+    I+ ++ GL  GADDYI KPF   EL ARIRAI+RR  
Sbjct: 61  QVLQHTRALRNATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHR--IHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           G A  L+  G + +N       ++G    I L+ KE+ +++ L  R     ++    + +
Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           Y   +E E   ID  I  LRKK+     GK +I+ + G G+++
Sbjct: 181 YGWGEEVESNAIDFLIHSLRKKI-----GKEHIKNIRGVGWMM 218


>gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter
           arcticus 273-4]
 gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR
           family) [Psychrobacter arcticus 273-4]
          Length = 224

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 80/222 (36%), Positives = 118/222 (53%), Gaps = 5/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLIEDD  +A  I L LKS    V      + G    +   FDA++LDL L    G  
Sbjct: 3   RILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLDLTLPKGDGMT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VL+  R   I TPV I++   +I ++V GL +GADDY+ KPF  +E++AR++A++RRS+G
Sbjct: 63  VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            +Q  +  G+++     + V  QG  + LT KE  ++E +        ++    + LY  
Sbjct: 123 RSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYGW 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           + + E   I+V I  LRKKL N      +I T  G GY L  
Sbjct: 183 KQDIESNAIEVHIHHLRKKLGND-----FILTKRGIGYYLNP 219


>gi|269839127|ref|YP_003323819.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
 gi|269790857|gb|ACZ42997.1| two component transcriptional regulator, winged helix family
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 231

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+  +   +   L+S    V       + +E    +  D I+LDL L D  G E
Sbjct: 8   RVLVVEDEPPILRMLASNLRSHGMQVLTAATLREAMEKHATFRPDVILLDLRLPDGRGEE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++R +R+   + P+ +LS       KV  L+ GADDY++KPF  +EL+ARIR  +RR+ G
Sbjct: 68  LIRQVRLTS-TVPIIVLSAYGEEGQKVAALEMGADDYLTKPFGVKELLARIRVALRRAAG 126

Query: 122 HA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            A  +  +  G+L+++L  + V V G ++ LT  EY ++++L++  N  LT    LN ++
Sbjct: 127 KASGEPEVRVGELTLDLANRRVTVDGQQVQLTPTEYALLKVLAVHLNKVLTDSQLLNEVW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                 E   + V++ +LR+KL  AA    Y+ T  G GY L
Sbjct: 187 GQAYGSEPHYLHVYVSRLRRKLGPAA---KYLVTEPGVGYRL 225


>gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas
           naphthalenivorans CJ2]
 gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family
           [Polaromonas naphthalenivorans CJ2]
          Length = 224

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/224 (36%), Positives = 123/224 (54%), Gaps = 4/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFY-EFDAIILDLGLTDIPG 59
           MRIL+ EDD+ LA  +   L++          G +         EFD +ILDLGL  + G
Sbjct: 1   MRILIAEDDQVLADGLLRTLRASGAAADHVASGTEADAALLTNTEFDLLILDLGLPRMHG 60

Query: 60  FEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            EVL+ LR    + PV IL+   S+E++V+GL  GADDY++KPF+ +EL AR+RA+VRR 
Sbjct: 61  LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            G   S I  G L  +   +   + GH + L+ +E  ++E+L  R    ++K+  +  L 
Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +  +E     I+V+I +LRKK+     G   I TV G GY L +
Sbjct: 181 EWGEEVSNNAIEVYIHRLRKKIE---KGPVRIATVRGLGYCLEK 221


>gi|300788479|ref|YP_003768770.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
 gi|299797993|gb|ADJ48368.1| two-component system response regulator [Amycolatopsis mediterranei
           U32]
          Length = 232

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/227 (32%), Positives = 111/227 (48%), Gaps = 12/227 (5%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++EDD  +A SI   L++E F V V   G   +E     E D ++LD+ L    G E
Sbjct: 9   RVLVVEDDVTIAGSIAARLRAEGFGVEVVHDGPAAVEADTASEPDLVVLDVMLPGFDGLE 68

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R +   +   PV +L+  +   D + GL  GADDY++KPF+   L AR+ A++RR   
Sbjct: 69  VCRRI-QGRRPVPVLMLTARADETDMLVGLGVGADDYLTKPFSMRVLTARVHALLRRVER 127

Query: 122 HAQ---SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            A    + IV GDL +++D + V   G    LT  E+ ++   + R      +E  L+ +
Sbjct: 128 SASVAGTRIVLGDLEIDVDQRRVARAGVAAQLTPIEFDLLVHFARRPRVVQPRERLLSEV 187

Query: 179 YDGRDEPE---VKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D          + +D  I  LR+KL         I TV G GY L 
Sbjct: 188 WDWDVHGTSAGTRAVDSHIKALRRKLGAD-----LIRTVHGVGYALE 229


>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
 gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
           [Starkeya novella DSM 506]
          Length = 239

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 56/228 (24%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            I +++D + +   +   L+   +   + +       L      D ++LD+ +    G  
Sbjct: 6   HIAIVDDHRDIRDLVGKYLQKHGYRTSLAENAAAFRRLLDRNAIDLVVLDIMMPGEDGLS 65

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R LR +  + PV +L+ M+   D++ GL+ GADDY++KPFN  EL+ARI+A++RR + 
Sbjct: 66  LCRYLRESS-TVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRRVQS 124

Query: 122 HAQSL-------IVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +     S+N+  + +    G  + L+  E++++ +        L+++ 
Sbjct: 125 LPPQRGQLKAKEVRFERWSLNVGRRELTGEDGMAVPLSTAEFRLLSVFLDHAGLVLSRDQ 184

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            L+       EP  + ID  + +LRKK+ +       I+T WG GY  
Sbjct: 185 LLDLTVGRSAEPFDRAIDNQVSRLRKKIESDPKSPTLIKTHWGGGYSF 232


>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
           87.22]
 gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
           87.22]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ANDAATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
 gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii
           DFL-11]
          Length = 227

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 6/226 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+EDD+ L   +   L+ E   V     G++ +      ++D +ILD  ++ + G 
Sbjct: 1   MRILLLEDDRQLGPWVAGGLREEGHVVDHFTDGKEALIAAMGQDYDVLILDRMVSGLDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VL++LR ++  TP   L+ +  ++ +V G  +G DDY++KPF   EL AR+ A+ RR  
Sbjct: 61  SVLKSLRASEDPTPALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALGRRRD 120

Query: 121 GH-----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            +       + +  G LS++L A+  E QG  I L  KE++++E    R    +T+ M L
Sbjct: 121 SNGTSTIEPTTLRYGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTRTMLL 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             ++D   +P   +++  I +LR K+ +       I T  G GYV 
Sbjct: 181 EQVWDMSFDPTTSVVETHISRLRSKI-DKPFDDELIRTRRGEGYVF 225


>gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 221

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L++ED+  L   + L L+     V V    E  +E  +   +D +++D+ L  + G 
Sbjct: 1   MRVLIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVLPGMSGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++ R +R    + P+ +L+   ++ D+V GL +GADDY+ KPF  EEL ARIRAI RR  
Sbjct: 61  DLCREVRRFS-NVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYE 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +       G+ +V+LDA  V  +G  + LT +EY ++  L    N T +++  L  ++ 
Sbjct: 120 ANGAP-FRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +   +  ++DV+I  LR+KL      + YI+TV G+GY L 
Sbjct: 179 FQAPGDTNVVDVYIGYLRQKLDP---ERRYIKTVRGQGYRLE 217


>gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
 gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme
           DSM 15981]
          Length = 260

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+++DD ++   I  +L SE  +    D G D + +     +  IILDL + D+ GF+
Sbjct: 27  RILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLMMDDMDGFQ 86

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
           V+  LR   I TP+ +LSG  +  DKV  L  GADDYI+KPF+   L A+++A +RRS  
Sbjct: 87  VIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSSL 146

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
                + ++ G      D   +  QG  I L+GKE  +++     +N  LTK+    +++
Sbjct: 147 LSGHANELIAGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYVW 206

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  D  +   I V I +LR K+ ++ G   Y++ + G GY   
Sbjct: 207 N-DDFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGYQFV 248


>gi|167464653|ref|ZP_02329742.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322384704|ref|ZP_08058372.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321150403|gb|EFX43896.1| two-component response regulator-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 230

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++I+ D      ++  L    ++V V    E  + L      D IIL+L L D+ G E
Sbjct: 5   KIVVIDSDPEAVDELKPHLLEHAYDVTVARTWEQAVHLIPKESPDLIILELALPDVNGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           + R LR +  STP+  LS        +  L  GAD+YI+KP+N  +L+ARIRA++RR   
Sbjct: 65  ICRFLRQSS-STPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCSI 123

Query: 119 --SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             S      +I    LS++L +  VE QG  + L+ KE+ ++ LL+   N     E    
Sbjct: 124 RTSNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELFE 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      + + + V +  LRKK+        YI TV G GY  
Sbjct: 184 KVWSVDSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKF 228


>gi|260219537|emb|CBA26382.1| Transcriptional regulatory protein ompR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 221

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 8/217 (3%)

Query: 16  IELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTPV 75
           +   L  E F V + + G+    +      D I+LDL +    G  + R LR A   TPV
Sbjct: 1   MRRYLTQEGFEVLLAEDGKSLTRIMLRETADLIVLDLMMPGEDGLSICRRLRAANDVTPV 60

Query: 76  CILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHA--------QSLI 127
            +L+      D++ GL+ GADDY+ KPFN  EL+ARI A++RR               ++
Sbjct: 61  IMLTAKGEDIDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPTQEAPGAPSSDNEIV 120

Query: 128 VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEPEV 187
             G    +L  +T++     I LT  E+ M++ L       L++E           EP  
Sbjct: 121 RFGTFVFDLGLRTLKKADQEITLTTGEFAMLKALVRHPRIPLSREKLAQLSRGREFEPFD 180

Query: 188 KIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           + +DV + +LRK L        +I+TVWG GYV   +
Sbjct: 181 RSLDVQVSRLRKLLETDPTTPRFIQTVWGVGYVFVPD 217


>gi|261366411|ref|ZP_05979294.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
 gi|282571672|gb|EFB77207.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
           15176]
          Length = 233

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 2/221 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           R+LL++D++ L   I  +LK   F  V      ++ I   K    D I+LD+ L D  GF
Sbjct: 10  RLLLVDDEQELLKMISDILKDAGFETVLTAMSVKEAILTAKEETPDLIVLDVMLPDGDGF 69

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ LR    + P+  L+      DK+ GL  GADDYISKPF  +EL+ RI A++RR+ 
Sbjct: 70  SLMQQLRTF-TNVPIIFLTAKDEATDKLSGLGLGADDYISKPFMPQELLLRIYAVLRRTY 128

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+V     ++     V      I LT KE+ ++E L+      +T +     L+ 
Sbjct: 129 KEDSPLLVLDGCKIDFSRAEVYKGNEVISLTAKEHALLETLARNAGKIVTVDALCEALWG 188

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                    ++  + ++R+K+         + T+ G GY L
Sbjct: 189 DNPFGYENSLNAHVRRVREKIETDPSKPVSLITIKGLGYKL 229


>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
 gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
          Length = 223

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 6/222 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +   +     S+ + V     G + ++     + D I+LD+ + DI G  
Sbjct: 4   RLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLAR-QPDLILLDINMPDIDGLT 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +R   I+ P+  L+      DK+ G Q+GADDYI KPF+ +EL AR+ A +RR + 
Sbjct: 62  LCQKIREL-ITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHLRREQR 120

Query: 122 HAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           H    ++   G+L+++  A+TV V G  + L+ +E+ ++ELLSL       +E     ++
Sbjct: 121 HRNKATIRFFGELTIDYSARTVTVAGEPVALSKREFDIVELLSLNAGQVFDRERIYETVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
               E     +   I K+R KL+      +YI+TVWG GY  
Sbjct: 181 GLDGEGNSDTVMEHIRKIRAKLAACTLH-SYIDTVWGCGYRW 221


>gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein,
           C-terminal [Pseudomonas syringae pv. syringae 642]
 gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein
           [Pseudomonas syringae Cit 7]
          Length = 220

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 84/222 (37%), Positives = 131/222 (59%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD+A+   I + L +E + +   + G   +   +   FD ++LDLGL  + G 
Sbjct: 1   MRLLLVEDDRAIGQGIRVALNTEGYTLDWLEDGLSALHALRSEPFDLLLLDLGLPRMDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++LR LR   ++ PV IL+      D++ GL +GADDY+ KPF+ +EL AR+RA++RRS+
Sbjct: 61  DLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRRSQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G AQ L+    +S++  ++ V  QG  + +T  EYQ++  L +R    +T+E   N LY 
Sbjct: 121 GRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            +D+ E   ++V I  LRKKLS        I TV G GY+L 
Sbjct: 181 WQDKVESNTLEVLIHNLRKKLST-----ELIRTVRGVGYLLE 217


>gi|300853659|ref|YP_003778643.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528]
 gi|300433774|gb|ADK13541.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM
           13528]
          Length = 231

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 6/228 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           + IL++EDD  +   +  +L+  N+NV     G +     + Y+F  ++LDL L  I G 
Sbjct: 5   INILIVEDDTDINKLLCKILEKNNYNVRGAFSGTEAEMCIEKYDFQLVLLDLMLPGITGE 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS- 119
           +++  +R  K + PV ++S  ++ E K+  L+ GADD+ISKPF+ EE++AR+ A +RR  
Sbjct: 65  KLIEKIRKVK-TMPVIVISAKTAQETKIEVLKLGADDFISKPFDVEEVLARVCAQLRRYM 123

Query: 120 ----RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                   Q+++   +++++ +   V ++   + LT +E+ ++ELL        TK    
Sbjct: 124 IFSNSNEKQNILTYKNMTLDRENHKVFIRSQEVLLTIREFCILELLMSYPKKVFTKANLF 183

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            H++  +   +   I+V +  LR K++       YI TVWG G+ +++
Sbjct: 184 EHVWKDKFISDDNTINVHMSNLRSKIAKIDSNTEYIHTVWGIGFKMKD 231


>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
 gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
           ATCC 49185]
          Length = 221

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 122/223 (54%), Gaps = 7/223 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++ED+K L   IE  L  E+F  Y    GE  +E+   +  D I+LD+ L  + G+E
Sbjct: 4   KILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINLPKMNGWE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V + +R    + P+ +++   S  D+++GL  GADDYI+KPF+ + L  +I+ ++   + 
Sbjct: 64  VCQNIRKES-NIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKML---KI 119

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
              S     +LS +  +  + V    I LT +E Q +E L   K    ++++ LN ++  
Sbjct: 120 DENSSYKFNNLSFDFRSGELIVNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWGF 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             E + +++D  + +LRKKL + +   + I+TV G GY+  EN
Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS---DMIKTVRGMGYIFDEN 219


>gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M IL+IEDD  ++  +   L++E + V +   G +G++L +  E   ++LDL L  + G 
Sbjct: 1   MNILVIEDDARVSDFLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGMSGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ + LR  +   P+ +L+ ++ I+D+V GL+ GADDY++KPF  EEL+ARI A++RR R
Sbjct: 61  ELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLRRGR 120

Query: 121 GHAQ--SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                 +++   DL ++ +   V   G  I LT KE   +ELL        ++E  L+++
Sbjct: 121 EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRERILSNV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           +   ++P   I+DV++ +LR K+         ++TV G GY L
Sbjct: 181 WGANEDPLTNIVDVYVRRLRSKIDEGQPVP-LLKTVRGLGYRL 222


>gi|325686293|gb|EGD28332.1| phosphate regulon response regulator [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 225

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   D G+   +       D +ILDL L D  G E+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR        PV + S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+KL  A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQKLGEAG---KHIETVRGVGYRYHE 223


>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
 gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. G11MC16]
          Length = 224

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/222 (26%), Positives = 113/222 (50%), Gaps = 6/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D++ +   + + L++  F       G++ + +      DAI+LD+ + +  GF V
Sbjct: 6   VLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVMMPNQDGFSV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--R 120
              +R      P+  L+ +    DKV+G + G DDYI KPF+  EL+AR+ A++RR+   
Sbjct: 66  CARIREQS-DVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLRRTWRG 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  G+L+++   + V V    + LT KE++++  L+       +++  L +++ 
Sbjct: 125 RERDGQLQFGNLAIDEKGRKVTVGSEPVRLTLKEFELLLFLAKHHGQVFSRDDLLVNVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                  + +D  +  LR KL +A     YI+TVWG GY   
Sbjct: 185 YDYTGNARTVDTHVKTLRMKLKDAG---RYIQTVWGIGYKFE 223


>gi|313200852|ref|YP_004039510.1| winged helix family two component transcriptional regulator
           [Methylovorus sp. MP688]
 gi|312440168|gb|ADQ84274.1| two component transcriptional regulator, winged helix family
           [Methylovorus sp. MP688]
          Length = 233

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 72/227 (31%), Positives = 114/227 (50%), Gaps = 5/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I+LIED+  +   +   L+   F V+ T  G+ G+      + DAIILDLGL D+ G +V
Sbjct: 7   IILIEDEVQIQRFVHAALEDAGFTVHSTPSGKQGVIDTGTRKPDAIILDLGLPDMDGIDV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR-- 120
           +R +R    + P+ +LS  +    KV  L +GADDY++KPF   EL+ARIRA +RR    
Sbjct: 67  IRQIRSWS-NVPMIVLSARTQEAQKVSALDAGADDYLTKPFGTAELLARIRAQLRRHSQA 125

Query: 121 --GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
                +S+   GD+ V+L  + V   G  + LT  E++++  L       +T+   L  +
Sbjct: 126 GNAAQESVFTMGDIRVDLVNRQVHRGGALVSLTPIEFRLLATLIRYAGRVVTQRQLLKEV 185

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +          + +++  LR KL        Y+ T  G GY L  +A
Sbjct: 186 WGPSHIESGHYVRIYMGHLRHKLEADPAQPRYLLTETGVGYRLLADA 232


>gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator
           [Chloroflexus aggregans DSM 9485]
 gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family
           [Chloroflexus aggregans DSM 9485]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 2/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDDK LA  IE +L+ E   V V   GE G+++     +D  ++D  L    G 
Sbjct: 1   MRILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGP 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + RA R A++ T + +L+    IEDK+ G +SGADDY+ KPF  EEL+AR+RA+ RR  
Sbjct: 61  SLCRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFN 120

Query: 121 GH-AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
            +     +  G + ++L + T      R+ LT  E++++E L      TLT++  L++++
Sbjct: 121 PNLGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               + + +++DV++  LR+KL NA G  + I TV G GY L 
Sbjct: 181 SFEHDVQPQMVDVYVSYLRRKL-NAPGEADPIVTVRGIGYRLE 222


>gi|307325941|ref|ZP_07605140.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306888433|gb|EFN19420.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 244

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 5/227 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   +   L+ E + V     G   +++ + +  DA++LD  L D  G  
Sbjct: 19  RVLVVDDEPDLTEVLSGALRYEGWEVRTAADGASALDVARAFRPDAVVLDWMLPDTDGLA 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
           VLRA+R       V  L+   ++ED++ GL +G DDY++KPF+ EE++AR+R ++RR   
Sbjct: 79  VLRAVRAELPDVCVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
           +R      +V  DL ++  A+ V   G  + L+  E++++  L       L+K   L+ +
Sbjct: 139 AREPGDDRLVVADLVMDEQAREVTRGGVAVELSRTEFELLRFLMRNPRRVLSKAQILDRV 198

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +      +  +++++I  LRKK+   AG    I TV G GYVL+  A
Sbjct: 199 WSYDFGGQAHVVELYISYLRKKI--DAGRAPLIHTVRGVGYVLKAEA 243


>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
           [Cyanothece sp. PCC 7425]
 gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
           [Cyanothece sp. PCC 7425]
          Length = 240

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/239 (30%), Positives = 128/239 (53%), Gaps = 19/239 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYE-------------FDA 47
           MRILL+ED+  LA  +  +L  E ++V +   GE  IE  +  +             +D 
Sbjct: 1   MRILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDL 60

Query: 48  IILDLGLTDIPGFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEE 107
           +ILD  L  + G E+ + +R  + +TP+ +L+   +++++V+GL +GADDY+ KPF   E
Sbjct: 61  LILDWILPRLSGLEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRE 120

Query: 108 LVARIRAIVRRSRG-----HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLS 162
           L+AR+RA++RR+        +  ++   DL ++   +    +G  I+L+ KE Q++E L 
Sbjct: 121 LLARVRALLRRTAAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLM 180

Query: 163 LRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            R    L+ E    HL+ G D+P   ++   +  LR+K+  A      I TV+G+GY  
Sbjct: 181 TRSQQLLSHEEIYQHLWPGEDKPSSNVLAAQVRLLRRKIEAAGEAP-LIHTVYGKGYRF 238


>gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 1/223 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATYGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + +++D  + +LR K+ +       I TV G GY L   A
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDVPA 228


>gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia
           xenovorans LB400]
 gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged
           helix family [Burkholderia xenovorans LB400]
          Length = 223

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 5/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDD  +   +E  L+   F V  T  G           +  ++LDLGL  + G 
Sbjct: 5   MRVLLVEDDDLIGCGVEAGLRQAGFTVDWTRDGHKAGLALDTTVYALVVLDLGLPRVSGM 64

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+ +R +    PV +L+   ++ D+V GL++GADDY+ KPF+  EL+AR RA++RR++
Sbjct: 65  ELLKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQ 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G +   I   DL+VN  A+TV+V   R+ LT +E+ ++  L   +    ++      LY 
Sbjct: 125 GRSVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++E E   I+V +  LRKKL     G   I+TV   GYV+ +
Sbjct: 185 WQEEIESNAIEVHVSNLRKKL-----GAKLIKTVRNIGYVVEK 222


>gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|148824970|ref|YP_001289724.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253800812|ref|YP_003033813.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|254233257|ref|ZP_04926583.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|289747605|ref|ZP_06506983.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|13883750|gb|AAK48236.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
 gi|124603050|gb|EAY61325.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
 gi|148723497|gb|ABR08122.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis F11]
 gi|253322315|gb|ACT26918.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 1435]
 gi|289688133|gb|EFD55621.1| two component transcriptional regulatory protein [Mycobacterium
           tuberculosis 02_1987]
 gi|328460539|gb|AEB05962.1| two component system transcriptional regulator [Mycobacterium
           tuberculosis KZN 4207]
          Length = 286

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 68/224 (30%), Positives = 123/224 (54%), Gaps = 5/224 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++D+  LA  + + L+ E +N+     G   I   +    D ++LD+ L D+ G +V
Sbjct: 63  VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLDV 122

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---S 119
           L  LR      PV +L+   ++ED++ GL +G DDY++KPF+ EE+V R+RA++RR   +
Sbjct: 123 LHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTGVT 182

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              + + +V GDL ++ D+  V   G  + LT  E++++  +       L+K   L+ ++
Sbjct: 183 TVDSGAQLVVGDLVLDEDSHEVMRAGEPVSLTSTEFELLRFMMHNSKRVLSKAQILDRVW 242

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                    I++++I  LRKK+    G +  I T+ G GYVL+ 
Sbjct: 243 SYDFGGRSNIVELYISYLRKKI--DNGREPMIHTLRGAGYVLKP 284


>gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 228

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
 gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
           14600]
          Length = 237

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL +D+  +   + L L  E++ V   + G + ++L K    D  +LD+ +  + GF +
Sbjct: 5   ILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVMMPKMDGFCL 64

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---- 118
           L+ +R  K + PV +LS      DK+ GL  GADDY+SKPFN  E VARI A +RR    
Sbjct: 65  LKEIR-KKSNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRRFYAL 123

Query: 119 --------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLT 170
                        +  +   DL ++ +A T+      I LT  EY++++L         T
Sbjct: 124 GADIALGSGEDRGKKELRVQDLRLDREACTLYRGEEEIDLTSVEYRIMDLFMSHPGKVFT 183

Query: 171 KEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           K+      ++         I V I KLR KL +     +YI T+ G GY + +
Sbjct: 184 KQQIYERGWEEEYIVADNNIMVCISKLRSKL-DDGDNNHYIRTIRGLGYRMEK 235


>gi|197124306|ref|YP_002136257.1| transcriptional regulator [Anaeromyxobacter sp. K]
 gi|196174155|gb|ACG75128.1| two component transcriptional regulator, winged helix family
           [Anaeromyxobacter sp. K]
          Length = 227

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  +A  +   L  E   V V   G    E      +D ++LD  L D+ G 
Sbjct: 1   MKLLLVEDEDRVARVLARGLAEEGHQVDVCGTGLAAREQATTIAYDVVLLDWSLPDLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR  R   + TPV +L+   S  +KV GL++GADDY+ KPF+ +EL+ARI A+ RR  
Sbjct: 61  SVLREWRSRGLRTPVLLLTARGSTGEKVTGLRAGADDYLVKPFDFDELIARIEALHRR-- 118

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A  +   G ++++   + + V      LT +EY ++  L+      L++   +  ++ 
Sbjct: 119 GGATDVSALGPVTLDARRRALIVGAQSETLTAREYGLVAELARHAGEVLSRTRLIETVWG 178

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E    ++DV++  LR KL         IE+V G GY L 
Sbjct: 179 QEFEGNSNVVDVYVGYLRTKLERLGAVGVRIESVRGVGYRLV 220


>gi|154496872|ref|ZP_02035568.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
 gi|150273830|gb|EDN00943.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
           29799]
          Length = 263

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 1/224 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+L+ EDD  L  S++ + +   + V     G + +   +  E+D ++LD+ +  + G 
Sbjct: 40  MRLLVAEDDLKLLKSLKHIFEKNKYMVDAVSTGTEALAYAETEEYDGMVLDIMMPGLDGI 99

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            VLR++R   ISTP   L+  + ++ +V GL +GADDY+SKPF+  EL+AR+RA++RR  
Sbjct: 100 AVLRSVRGQGISTPALFLTAKTEVDQRVEGLDAGADDYLSKPFSTSELLARVRAMLRRKD 159

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
            +   L+  G+L +N     +   G    L+G+E+Q++E+L  R N  +T + F++H++ 
Sbjct: 160 NYVPDLLRAGELVLNRSTYELSCNGQTQALSGREFQIMEMLLQRPNFIITTDAFMSHVWG 219

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
              E +V ++ V I  LRKKL  A      I  V   GY L + 
Sbjct: 220 WDSEVDVSVVWVHISNLRKKL-AALKAPATIRFVRNAGYTLEQE 262


>gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 244

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 9/234 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L+++DD+ +   +   L    F V     G +  +L   +  D IILD+ +    GF 
Sbjct: 10  QLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIMMPGDDGFT 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS-- 119
           + + +R      P+ +L+  S   D+V GL+ GADDYI+KPF+  EL ARI+A++RR+  
Sbjct: 70  LCQQIRRDS-QVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLRRAEF 128

Query: 120 -----RGHAQSLIVTGDLSVNLDAKTVEV-QGHRIHLTGKEYQMIELLSLRKNTTLTKEM 173
                       +   + +++  +       G  + L+G +  ++ +   +    L ++ 
Sbjct: 129 RQPEKEKEPSRRLRFAEWTLDTLSHQRTHEDGSLLDLSGSDALLLGMFLQQPGVVLDRDT 188

Query: 174 FLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
             +        P  + IDV I +LR+KL +       I+T+ G GY+L     +
Sbjct: 189 ISDATRGRESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYMLIAEVHE 242


>gi|15807647|ref|NP_295328.1| response regulator [Deinococcus radiodurans R1]
          Length = 243

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 73/244 (29%), Positives = 128/244 (52%), Gaps = 28/244 (11%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP-- 58
           MR L++ED+  +   +   L+   + V       +  EL   + FDA+++D+GL + P  
Sbjct: 1   MRFLVVEDELDIRRPLVANLREAGYAVDEAGSAAEARELAGSFPFDALMVDVGLPEGPLA 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GF+++R LR A  ++PV  L+   S+ D++ GL +G DDY+ KPF+  E+ AR+RA+VRR
Sbjct: 61  GFDLVRDLRAAGKASPVLFLTARDSVTDRITGLDAGGDDYLVKPFHLGEVQARLRALVRR 120

Query: 119 SRGHAQSLIVTGD---------------------LSVNLDAKTVEVQGHRIHLTGKEYQM 157
            R  AQS     D                     L ++  ++ V   G R+ LT KE+ +
Sbjct: 121 GRAEAQSARSWRDCGWTGQAAPCSGAASGWRLARLRLDWTSRAVFRSGERVALTAKEFSL 180

Query: 158 IELLSLRKNTTLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGR 217
           +E+L+       T++  ++ ++DGR + E  ++D ++  LR+KL +       ++T+ G 
Sbjct: 181 LEVLASHPGRVYTRDELIDRVWDGRFDAESNVVDTYVRNLRRKLGD-----EVVQTMRGV 235

Query: 218 GYVL 221
           GY  
Sbjct: 236 GYSF 239


>gi|291524414|emb|CBK90001.1| Response regulators consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Eubacterium rectale DSM
           17629]
          Length = 222

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 66/222 (29%), Positives = 120/222 (54%), Gaps = 5/222 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I ++EDD+++     + LK+ N+ V   +  ++  +       D I+LD+ L D  G+++
Sbjct: 4   IYIVEDDESIREIETIALKNSNYIVSAFENAKEFYKKLDELVPDLILLDVMLPDESGYDI 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +R LR        P+ +++  ++  D ++GL  GADDYI KPF+  EL+ R++A++RR+ 
Sbjct: 64  VRKLRKRPATQDIPIIMVTAKTTEMDMIKGLDGGADDYIKKPFSIMELITRVKALLRRTA 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                L+   DL ++ +   V V    + LT KEY+++ LL   +   +T+E+ +  ++D
Sbjct: 124 KEEPKLLKLDDLVIDHERHVVTVNNEPVDLTYKEYELLRLLMGSQGIVMTREVIMRSVWD 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E E + +D+ I  LR KL +       I+TV   GYV+ 
Sbjct: 184 TDFEGETRTVDMHIKTLRHKLGDYGS---RIKTVRNVGYVIE 222


>gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
 gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens
           SBW25]
          Length = 226

 Score =  245 bits (626), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 119/221 (53%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++ F V           + K   FD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+  R   +  PV IL+   S+ ++V GLQ+GADDY+ KPF+  EL AR++ ++RR  
Sbjct: 61  KLLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ N  ++   + G  + L+ +E  +++ L   K   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
 gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           200]
 gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
           4222]
          Length = 216

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 9/221 (4%)

Query: 5   LIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLR 64
           +IED+  +   I   L ++NF V V   G +GI L +   +D ++LD+ L DI G+ + +
Sbjct: 1   MIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVMLPDIDGYSICK 60

Query: 65  ALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGHAQ 124
            +R      P+ +L+G+ + E +++G + G DDYI+KPF+    + R+ A++RR+     
Sbjct: 61  IMRGQS-DVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119

Query: 125 SL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +   +L +N  A    V G++I LT KE+++I  L   +   L++   LN ++  
Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +V++ID  I  LRKKL        YI+TV G GY + 
Sbjct: 180 EHYGDVRVIDTHIKNLRKKLGIT-----YIKTVKGIGYKIE 215


>gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4]
 gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family
           [Shewanella loihica PV-4]
          Length = 224

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 74/224 (33%), Positives = 121/224 (54%), Gaps = 8/224 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++LL+ED+  L   +   LK   +   VTD   +   L K   +D +ILD+GL D  G 
Sbjct: 1   MKLLLVEDNTLLVDELAKQLKQAGYVTDVTDRAAEADYLIKETHYDCVILDIGLPDGNGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L   R   I TPV +L+  S   +KV G  +GADDY+ KPF+ +EL+ARI A++ R+ 
Sbjct: 61  QLLETWRNQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHALINRAH 120

Query: 121 GHAQSL---IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           G   S    +    ++++   ++V V   +  LT  E++++++  +     L+K    + 
Sbjct: 121 GKTNSPTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
           LY   DE E  +++V++  LRKKL   A     IET  G+GY+ 
Sbjct: 181 LYQFDDEKESNVVEVYVTHLRKKLGKTA-----IETRRGQGYIF 219


>gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 229

 Score =  244 bits (625), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 3/213 (1%)

Query: 15  SIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEVLRALRVAKISTP 74
           +++  L+ + F V     G  G+   +    D ++LDLGL DI G +V + LR      P
Sbjct: 18  TVKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDS-EVP 76

Query: 75  VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SRGHAQSLIVTGDLS 133
           V +LS   ++ DK+ GL+ GADDY+ KPFN  EL ARIR ++RR  R    +    G++ 
Sbjct: 77  VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136

Query: 134 VNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR-DEPEVKIIDV 192
           ++  +    +QG ++ LT  E+ ++EL       TLT++   +  +         + +DV
Sbjct: 137 LDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDV 196

Query: 193 FICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
            + +LRKK+         I TV G GY    N 
Sbjct: 197 HVQRLRKKIEENPQAPRIILTVAGVGYRFEPNP 229


>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
 gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
           protein [Paenibacillus vortex V453]
          Length = 226

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 3/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFN-VYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           +IL+++DD  +   +++ L+      +     G + + +      D +++D+ + ++ G+
Sbjct: 3   KILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIMMPNMDGW 62

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R +R      PV +L+        V+G + G DDY+ KPF   ELV R++A+++R +
Sbjct: 63  ELCREIRR-NTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A   +  G L +N     V+       L  KE++++  L     +TLT++  +  ++ 
Sbjct: 122 VAASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
              E   + +DV + +LR++          I TV G GY L 
Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFR-IRTVRGLGYRLE 222


>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
 gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
           [Geobacillus sp. C56-T3]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 3/223 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED   L  ++  ML  E F V     G++G+ L +   +DAIILD+ L  I GF
Sbjct: 1   MKLLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVMLPGIDGF 59

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            ++R LR   I TPV  L+   S+ED+V+GL  G DDY+ KPF   EL AR+RA++RRS 
Sbjct: 60  SIVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSG 119

Query: 121 G-HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
               +  I    + +    K V V G  + LT K+Y+++E L   +   LTKE   + ++
Sbjct: 120 ALTTKQTIRYRGIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIW 179

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
               +  + I++VF+ +LRKKL       + I+TV G GY+L 
Sbjct: 180 GFDSDTTISIVEVFVHQLRKKLEPFGYHAD-IQTVRGIGYMLV 221


>gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
 gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. CCGE1002]
          Length = 246

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+++DD+ +   +   L+     V +   G       +    D I+LDL L    G  +
Sbjct: 7   VLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLENGAPDLIVLDLMLPGEDGLVL 66

Query: 63  LRALRVAKIS-TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR- 120
            R LR  K    P+ +L+  S   D++ GL+ GADDY++KPF   EL+ARIR+++RR+R 
Sbjct: 67  CRELRAGKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRRARM 126

Query: 121 -------GHAQSLIVTGDLSVNL-DAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                    +  ++  GD  ++      ++  G  + L+G EY+++ +        LT++
Sbjct: 127 LPPGMEVTESAPMLCFGDWRLDTTARHLLDADGTEVALSGAEYRLLRVFLDHPQRVLTRD 186

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             LN     + +P  + ID+ + +LR++L + A    YI+T+   GYV 
Sbjct: 187 QLLNLTQGRQADPFDRSIDLMVSRLRQRLRDGAREPRYIKTLRSEGYVF 235


>gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
 gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family
           [Chitinophaga pinensis DSM 2588]
          Length = 235

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 6/227 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+ED++ L  +++L L+ E + V   D G   ++  K   FD IILD+ L ++ G  V
Sbjct: 9   ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIV---RR- 118
              +R+     P+  LS  +S  D+V GL+ G DDY++KPFN EEL+ R+  ++   +R 
Sbjct: 69  CENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLIVKNKRI 128

Query: 119 -SRGHAQSLIVTGDLSVNLDAKTVE-VQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
             +    ++   G   ++  A+      G    L+ KE  +++LL   K   +T+E  L 
Sbjct: 129 QDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKETMLLKLLIENKGEVVTREKILQ 188

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
            ++     P  + ID FI   RK     +    Y  +V G GY   E
Sbjct: 189 VVWGYNVYPTTRTIDNFILNFRKYFEEDSRNSRYFHSVRGVGYKFTE 235


>gi|225016919|ref|ZP_03706111.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
 gi|224950313|gb|EEG31522.1| hypothetical protein CLOSTMETH_00832 [Clostridium methylpentosum
           DSM 5476]
          Length = 258

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/224 (30%), Positives = 114/224 (50%), Gaps = 5/224 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ L+  I   L  E           +G+ L +  E    +LD+ L D  G +
Sbjct: 38  KILLVEDDRMLSRGIAFALSQEGHESICASTCREGLVLGRDAE--LALLDINLPDGNGLD 95

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +   LR  + S PV  L+   +  + V G ++G DDYI+KPF+   L  R+RA++RR+  
Sbjct: 96  LCTQLRRER-SLPVIFLTANDTEREIVAGFETGCDDYIAKPFSVPVLKQRVRAVLRRADR 154

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD- 180
             +++  +G L V+    +V   G  + LT  EY ++ELL+  K   LT++  +  L+D 
Sbjct: 155 Q-ETVFSSGALRVDYQRYSVHKDGKPVKLTATEYALLELLTKNKGRVLTRQTLIERLWDC 213

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
             +  +   + V I +LR+K+        Y+ TV+G GY   E 
Sbjct: 214 NENFVDENALSVNIARLRRKIEEDPKHPRYVITVFGIGYTWGEE 257


>gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
 gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family
           [Clostridium lentocellum DSM 5427]
          Length = 237

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++ED++ + + I   L +  +       G++ + +   +  D I+LDLGL D+ G EV
Sbjct: 6   ILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDMDGLEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS--- 119
           L ++R    STP+ ++S  S   +KV+ L  GADDYI+KPF   EL+ARIR  +R S   
Sbjct: 66  LTSVREWS-STPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTAIRHSLKI 124

Query: 120 --RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                  ++    DL+++ D   + V   ++HLT  E+++I LL+      LT +  +  
Sbjct: 125 SKTNQGANIFKASDLTIDYDKHMLLVGDEKVHLTQIEFKLISLLAQHAGKVLTYDYMIKK 184

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           ++        +I+ V +  +R+K+    G   YI T  G GY + E   + T
Sbjct: 185 IWGPYAGSNNQILRVNMANIRRKIEQNPGDPKYIFTEVGIGYRMIEEEGEST 236


>gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3]
 gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family
           [Shewanella sp. ANA-3]
          Length = 219

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 82/223 (36%), Positives = 117/223 (52%), Gaps = 6/223 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRI+L+ED++ LA  I L L      V      +  +   K   F AI+LDLGL D  G 
Sbjct: 1   MRIMLVEDNELLAQGICLSLAKMGMQVDHLSSYQQALVGIKNETFSAIVLDLGLPDGNGK 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+L+A R   +S P  +L+  +  + K+  L  GADDY+ KPF+  EL ARIRAIVRR  
Sbjct: 61  ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVRRQY 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G   + +  G LS++L+ + V  +   + L+ +E+Q++  L+      LT+       Y 
Sbjct: 121 GLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQLTYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              E     I+V I  LRKKL+N       I+TV G GY L E
Sbjct: 181 WD-EVGSNSIEVHIHHLRKKLAND-----LIKTVRGIGYTLTE 217


>gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
 gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01]
          Length = 218

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 81/222 (36%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL+EDDK L  S+   L    + V   + G       K   F A+ILDL L DI G 
Sbjct: 1   MRLLLVEDDKLLGQSMVTSLSRHGYTVDWVEKGSGVTSALKTEAFTAVILDLTLPDIDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R      PV IL+    I D+V+GL  GADDY+ KPF  EEL+AR+R ++RR  
Sbjct: 61  EVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G A+ +I  G LS++L  +++      + LT  E++++  L        +KE     L+ 
Sbjct: 121 GSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLHG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +      I+V I  LRKK       K  I+ + G GY+L 
Sbjct: 181 WDEGSSDNAIEVHIHNLRKK-----APKVVIKNIRGVGYILE 217


>gi|266621451|ref|ZP_06114386.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
 gi|288866892|gb|EFC99190.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
           hathewayi DSM 13479]
          Length = 228

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL+IEDDK + + I++ LK++ +   + D G  GI        D I+LDLGL DI G EV
Sbjct: 6   ILVIEDDKTIQNFIKITLKTKGYRCVLADDGLTGISYFYANNPDLILLDLGLPDIDGMEV 65

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--SR 120
           L  +R      PV ++S     ++KV  L +GADDYI+KPFN  EL+ARIR  +R   S 
Sbjct: 66  LGQIRQES-EVPVIVVSARGMEQEKVGALDAGADDYITKPFNAGELLARIRVALRHRSSA 124

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              + +     L ++ + + V V+G  +HLT  EY+M+ LL       LT       ++ 
Sbjct: 125 PRQEPVFELDTLKMDFEKRKVSVRGEEVHLTPIEYKMLSLLVNNSGKVLTHHYIQQEVWG 184

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
                + + + VF+  +R+K+   +    +I T  G GY   E+
Sbjct: 185 YDTTDDYQSLRVFMANIRRKIEEDSTKPRFILTEVGVGYRFVES 228


>gi|229592126|ref|YP_002874245.1| putative two-component system response regulator protein
           [Pseudomonas fluorescens SBW25]
 gi|229363992|emb|CAY51538.1| putative two-component system, response regulator protein
           [Pseudomonas fluorescens SBW25]
          Length = 241

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 64/230 (27%), Positives = 105/230 (45%), Gaps = 7/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           ++L++EDD+ LA      L+S    V V   G          + D +ILDL L    G  
Sbjct: 7   QVLIVEDDERLAELTREYLESNGLQVSVEGDGALAAARIIAEQPDLVILDLMLPGEDGLS 66

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + R +R       + +L+  +   D+V GL  GADDY+ KP     L+ARI+A++RRS  
Sbjct: 67  ICRTVRERYDGV-ILMLTARTDDMDQVLGLDMGADDYVCKPVRPRLLLARIQALLRRSEP 125

Query: 122 H------AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
                  +Q  +  G L V+   +   +    I LT  E+ ++ LL       L++E   
Sbjct: 126 AEPTAVGSQRRLQFGPLVVDNALREAWLNNAGIELTSAEFDLLWLLVANAGRILSREEIF 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             L     + + + IDV I ++R K+ +       I+T+  +GY+    A
Sbjct: 186 IALRGIGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTIRSKGYLFVPEA 235


>gi|209517611|ref|ZP_03266449.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
 gi|209501907|gb|EEA01925.1| two component transcriptional regulator, winged helix family
           [Burkholderia sp. H160]
          Length = 240

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 123/222 (55%), Gaps = 1/222 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++EDD  +   +   L+  +F V     G  G+      +FDA++LD  L D+ G  
Sbjct: 16  RILVVEDDDRVRLEVSTALEDYDFAVEGVSSGHAGLLRALNGDFDAVVLDRMLPDVDGLS 75

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L  LR     TPV ILS +S+++++VRGL++G DDY++KPF+  EL AR+ A++RR   
Sbjct: 76  ILSTLRNVGTETPVLILSALSAVDERVRGLRAGGDDYLTKPFDSLELTARLNALLRRRSS 135

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             Q +++  GDL +++    V   G  I L  +EY++++ L L     +T+ M    +++
Sbjct: 136 SEQANVLSVGDLVLDMGTHRVRRAGESIELKPREYELLKYLMLHTEQPVTRAMLFESVWN 195

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
                   +ID+ I +LR+K+S        I TV   GYVLR
Sbjct: 196 YHFNVHTNVIDMHIGQLRRKISLNGRFSLMIHTVRNVGYVLR 237


>gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida
           FTG]
 gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida
           FTG]
          Length = 228

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 8/223 (3%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL EDD  L   +   L+ E   V +   GE      +   +D ++LD+ +    G 
Sbjct: 1   MRILLAEDDLHLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDISMPIKTGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVR--- 117
           EVLR +R   I  P+ +L+    +ED+++GL  GADDY++KPF  +ELVARI+AI R   
Sbjct: 61  EVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120

Query: 118 -RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
            RS       I  GD S N  ++TV   G  I ++ KE  ++ +L       + K   L 
Sbjct: 121 TRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGY 219
            +Y    E +   ++V +  LRKK+       N+I+T+ G GY
Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKI----NIPNFIQTIRGVGY 219


>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
 gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ASDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+         I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEEIPSSPTLIRTVRGVGYRL 221


>gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus
           flagellatus KT]
 gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family
           [Methylobacillus flagellatus KT]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 10/229 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RILLI+DD  L   +E  L +E+F++ +   GE+G  L    E D ++LD+ +    GF+
Sbjct: 3   RILLIDDDVELCQMMEEYLGAEDFSLTIAHDGEEGARLALSGEHDLVVLDVMMPRFNGFD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
            LR +R +    PV +L+      D++ GL+ GADDY+SKPFN  ELVAR+RAI RR   
Sbjct: 63  TLRLIRASS-QIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVVV 121

Query: 119 ------SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKE 172
                 +  +  S+   G +++    + +E +G  + +T  EY ++E+L+      ++K 
Sbjct: 122 RDEALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSKA 181

Query: 173 MFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                     +    + +DV +  LR+KL     G++ I+TV G GY  
Sbjct: 182 ELFTQALGRAESRYDRSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGYQF 230


>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
           [Pseudomonas putida KT2440]
 gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
 gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
 gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
 gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
 gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
 gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
 gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida F1]
 gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida GB-1]
 gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
           [Pseudomonas putida W619]
 gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
          Length = 227

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 120/224 (53%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRILL+ED++ +  ++   L  + + V     G  G+ L     +D I+LD+ L  I G+
Sbjct: 1   MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGY 60

Query: 61  EVLRALRV-AKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            + + LR  A+  TPV +L+    ++D+++G +SGADDY+ KPF   EL ARI A++RR+
Sbjct: 61  TLCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRA 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +G  +  +   DLS +LD   V  QG  + L     +++ +L  +    L +E+    L+
Sbjct: 121 QGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLAVLMQKSPHVLRREVLEEALW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              D P+   +   + +LR+ + +    K  + TV G GY L E
Sbjct: 181 G-DDCPDSDSLRSHVHQLRQVI-DKPFEKPLLHTVHGVGYRLAE 222


>gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 219

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/221 (35%), Positives = 129/221 (58%), Gaps = 6/221 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL+ ED++ +A  +E  L+S  F   V   G+  ++      FD ++LD+GL    GF 
Sbjct: 3   RILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGLPGRDGFT 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           VLR LR ++++ PV +L+   S+ D V GL+ GADD+++KPF  EEL+AR+R  +R +  
Sbjct: 63  VLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAAR 122

Query: 122 HAQ-SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             + +++ +GDL ++L  +   V G  + LT +E+ ++EL        L++E  L+H++ 
Sbjct: 123 APEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVWG 182

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              +P   I+DV++  LRKKL     G   +ETV G GY +
Sbjct: 183 YDFDPGSNIVDVYVRALRKKL-----GAERLETVRGMGYRM 218


>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
 gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|226356996|ref|YP_002786736.1| response regulator CheY [Deinococcus deserti VCD115]
 gi|226318986|gb|ACO46982.1| putative response regulator, CheY [Deinococcus deserti VCD115]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 4/224 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
            +++IED+  +   +   L+     V   D     +E       DA++LD  L    G  
Sbjct: 3   HVVVIEDEGTVRDVLRFHLERAGLRVTALDSTHGALEQL--GGADALVLDWMLPGESGLG 60

Query: 62  VLRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
            LR LR        PV +L+  ++  ++V GL+SGADDY++KPF+  ELVAR+RA++RRS
Sbjct: 61  FLRRLRADAELRRMPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVRALLRRS 120

Query: 120 RGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
           +  +   +  G L V+++A    V G R++LT +E+ ++  L+       ++   L+ ++
Sbjct: 121 QPDSPPTLTNGPLIVDVNAAEARVSGKRLNLTRREFDLLAFLTQNTGRVYSRTELLDRVW 180

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                   + +D  + +LR  L +     +++ETV G+GY +R 
Sbjct: 181 GADFLGGERTVDQHVTQLRAHLGDDPSKPDFLETVRGKGYRMRP 224


>gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
 gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
           ATCC 27064]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
 gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family
           [Streptomyces violaceusniger Tu 4113]
          Length = 239

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 1/227 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+ +DD A+  S+E  L+   F+V + D G   +   +    D ++LD+ + D+ G E
Sbjct: 8   RVLVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDISMPDLSGIE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V RALR      PV +LS +  + D+V GLQ+G DDY+ KPF  +ELV R+ A++RR   
Sbjct: 68  VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
            A   +  G L +  +A+   + G  + LT +E+++++  +      LT++  L+ ++  
Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWGY 187

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
             E     +D F+  LR+KL  A G    + TV G G+VLR +   E
Sbjct: 188 DFEVRTDAVDTFVSYLRRKLE-AGGRPRMLHTVRGVGFVLRPSGPPE 233


>gi|297156303|gb|ADI06015.1| putative two component system response regulator [Streptomyces
           bingchenggensis BCW-1]
          Length = 247

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/230 (29%), Positives = 114/230 (49%), Gaps = 8/230 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  L   +   L+ E + V     G   +   + +  DA++LD  L D  G  
Sbjct: 19  RVLVVDDEPDLTEVLSGALRYEGWEVRTAADGASALATARAFGPDAVVLDWMLPDSDGLT 78

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEEL------VARIRAI 115
           VLR LR       V  L+   ++ED++ G+ +G DDY++KPF+ EE+      + R   +
Sbjct: 79  VLRGLRAELAGVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVLARLRGLLRRAGM 138

Query: 116 VRRSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            R S  H    +V GDL ++  A+ V   G  I L+  E++++  L       L+K   L
Sbjct: 139 ARGSDLHQADRLVVGDLVMDEQAREVTRGGVVIELSRTEFELLRFLMRNPRRVLSKAQIL 198

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           + ++         +++++I  LRKK+   AG    I TV G GYVL+ + 
Sbjct: 199 DRVWSYDFGGRAHVVELYISYLRKKI--DAGRTPLIHTVRGVGYVLKPDV 246


>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
 gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
          Length = 254

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 8/233 (3%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I +++DD+ +   +   L+   F+        + +E+ +      I++D+ L  + G E+
Sbjct: 7   ICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGLEL 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R LR    + PV  L+ +  I D++ GL+ GADDY+SKPF   EL+ARIR ++RR+ G 
Sbjct: 67  FRNLRAES-TVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEGG 125

Query: 123 AQ------SLIVTGDLSVNLD-AKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           A+      + +      ++      V   G  + L+G EY+++E+        L+++  L
Sbjct: 126 ARRDQPETTPLQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRVLSRDELL 185

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDE 228
                    P  + IDV I +LR +L +       I+TV G GYVL  + + +
Sbjct: 186 ERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDVRPQ 238


>gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
 gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium
           sp. SKA34]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 2/226 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL++EDD  L+H ++  L      V   +  E+G+   + Y  D  I+D+GL D  G 
Sbjct: 1   MRILIVEDDAILSHHLKSQLSELGNQVQCANTAEEGLFFAENYPNDIAIVDIGLPDRDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +++ +R   +  P+ IL+  S+ +DKV GL++GADDY+ KPF KEE+VAR+ A+VRRS 
Sbjct: 61  SLIKDMRKKGLRLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G  +  +  GD+ V+L AK V V    + LT  EY ++E L       ++K+  L+ LY+
Sbjct: 121 GFVKPEMTAGDIRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAK 226
              E +   I+V I +LRKK +   G +N I T+ G+GY+   NA+
Sbjct: 181 -DQEGDPNTIEVMISRLRKKFTK-TGQENPISTIRGQGYIFELNAQ 224


>gi|313123613|ref|YP_004033872.1| DNA-binding response regulator, ompr family (rec-whth domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280176|gb|ADQ60895.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/223 (33%), Positives = 117/223 (52%), Gaps = 5/223 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD+++       L+S NF V   D G+   +       D +ILDL L D  G E+
Sbjct: 4   IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63

Query: 63  LRALRVAK--ISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           L  LR        PV + S  ++  DKV+ L SGADDY++KPF   E+V+R++A++RR+ 
Sbjct: 64  LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    + + L    V   GH++ LT KEY +++LL     T  ++E  ++ +++
Sbjct: 124 RKKEDKIDKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIWE 183

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E + +DV +  LR+KL  A     +IETV G GY   E
Sbjct: 184 TGFYGETRTVDVHVRTLRQKLGEAG---KHIETVRGVGYRYHE 223


>gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter
           thermophilus TK-6]
 gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family
           [Hydrogenobacter thermophilus TK-6]
          Length = 218

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 88/220 (40%), Positives = 136/220 (61%), Gaps = 4/220 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LLIEDD +LA +++ +L+ E ++V +   G  G EL    EFD I+LDL L  + G 
Sbjct: 1   MRLLLIEDDASLAKALKEVLEKEGYHVSLALDGRRGYELALCEEFDLIVLDLLLPSMGGE 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVL++LR + + TPV  L+ +S +  KV     GADDY++KPF+ EEL+AR+RAI+RRS 
Sbjct: 61  EVLKSLRESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAIIRRSS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G    ++  G++ + ++ K V V G  + LT  EY ++E L L +   +++E  +     
Sbjct: 121 GSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIERCLS 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            R EPE   ++VFI ++RKKL    G K++I++  G GY 
Sbjct: 181 YRYEPESNTVEVFISRIRKKL----GIKDFIKSSRGFGYR 216


>gi|255530281|ref|YP_003090653.1| response regulator receiver [Pedobacter heparinus DSM 2366]
 gi|255343265|gb|ACU02591.1| response regulator receiver [Pedobacter heparinus DSM 2366]
          Length = 233

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 7/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL++EDD+ L   +   LK+E + V     GE    +    + D ++LD  L    G E
Sbjct: 10  KILIVEDDENLRFLVVHRLKAEGYEVSEVGDGEAAERMILAEKPDIVLLDWMLPGKQGAE 69

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVA----RIRAIVR 117
           V   +R       + +++  +   DK+     G  DY++KPFN + LVA    +++ I+ 
Sbjct: 70  VCEEVRKQGFDNLIIMMTAKAQDVDKIDAYNFGVSDYVTKPFNMDVLVAMLDSKVKFIL- 128

Query: 118 RSRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
                   +   G++  + +  T+   G +I LT  E +++       N  + ++  +  
Sbjct: 129 --NNDRSEVHRFGNMEHHPNIHTLFRDGKKIELTILENRILLYFLRNPNKVINRDELMLV 186

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
           ++    +   + +D+ I +LRKK+         ++TV G GY    +
Sbjct: 187 VWGYNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVGYRFNPS 233


>gi|257065604|ref|YP_003151860.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
 gi|256797484|gb|ACV28139.1| two component transcriptional regulator, winged helix family
           [Anaerococcus prevotii DSM 20548]
          Length = 223

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/223 (33%), Positives = 127/223 (56%), Gaps = 1/223 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L++ED++ L   ++  L    +   +   G++ ++L    ++D IILD+ L    GF
Sbjct: 1   MKVLIVEDERKLLRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLPKKDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EVLR +R       + +L+  S I+D+V+GL  GA+DY++KPF+ +EL AR+R+++RR  
Sbjct: 61  EVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLRRKS 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              +  I    ++ +   + V  +G  + LT KE  +IE L L +   ++ E  +NH++D
Sbjct: 121 IMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELMNHVWD 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
              +     + V +  LRKK+  A G KNYIE V G+GY + E
Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKATG-KNYIENVIGKGYKIYE 222


>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
           winged-helix DNA-binding domain [Solibacillus silvestris
           StLB046]
          Length = 232

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/226 (30%), Positives = 123/226 (54%), Gaps = 8/226 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL+EDD+ +A  I+  L  E + V     G +G+E      +D I++D  + ++ G  
Sbjct: 4   QILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMDGLS 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           ++  +R+     P+ ++S  S+  DKV GLQ  ADDY++KPF+ EEL AR+R+ +RR + 
Sbjct: 64  MIEHIRLQS-DVPIIMISAKSNESDKVTGLQD-ADDYLAKPFSLEELKARVRSQIRRWQR 121

Query: 122 H-----AQSLI-VTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +     A+ ++     L ++   + V ++   + LT KE+ ++++L+       TKE   
Sbjct: 122 YNRVFTAEDMVSYVRGLKIDWVKECVYIEEVEVSLTQKEFALLKVLAQNPFELFTKEALY 181

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            H++   +  +   + V I  LR+KL +      YI+TVWG+GY  
Sbjct: 182 THVWHQVELDQTHTVTVHIKALREKLQDPVKSPKYIQTVWGKGYRF 227


>gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
 gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis
           F0399]
          Length = 231

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MR+LL EDD  L   I+ ML+  +  V     G+D  E   + E+D +ILD  +    G 
Sbjct: 7   MRVLLAEDDLRLGKLIQYMLEQNDITVEWVTNGDDIYEYATYTEYDILILDWMMPGENGV 66

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           +    LR +     + +L+   S+ED+V GL +GADDY+ KPF   EL+AR+RA+ RRS 
Sbjct: 67  DACARLRKSGYDRAILMLTARDSVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRST 126

Query: 121 GHAQSLIV-TGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLY 179
              Q  +   G   +N  A  +E  G  I L+ +E+Q+ +LL+      + +++ L+ ++
Sbjct: 127 QKIQHEVDEIGGFRLNRTANILEKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIW 186

Query: 180 DGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
               +     ID ++  LRKKL +AA     I+T+ G GY L  +
Sbjct: 187 GLESDVSSNNIDSYMKMLRKKL-DAASEGEAIKTIRGVGYKLEAS 230


>gi|253581956|ref|ZP_04859180.1| transcription regulator [Fusobacterium varium ATCC 27725]
 gi|251836305|gb|EES64842.1| transcription regulator [Fusobacterium varium ATCC 27725]
          Length = 239

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/237 (28%), Positives = 124/237 (52%), Gaps = 16/237 (6%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++D+  +   ++L L+   + V+ TD G+  + L +  + D I+LDL L ++ G +
Sbjct: 4   KILIVDDEIHILELLKLNLEIYGYEVFTTDTGKGVMSLIEKIKPDIILLDLMLPEVNGID 63

Query: 62  VLRALRVAKI--STPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRS 119
           + + +R         + I+S  S   DK+  L+ GADDYI+KPF+  E++ARI A  RR 
Sbjct: 64  ICKRIRNNSSLNEIRILIISAKSEEIDKIVCLEIGADDYITKPFSLREIIARINAFSRRI 123

Query: 120 RG------------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNT 167
                         + ++ I   DL ++L    V    + + LT +E +++  L   K  
Sbjct: 124 ESEISIDLNNHSLENNENYIYYKDLKIDLIKNIVYKNNNPLELTIRELKLLIFLLTNKGK 183

Query: 168 TLTKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLREN 224
            +++E     +++  +  + + +DV I KLR+KL +     +YIET+ G GY + +N
Sbjct: 184 VISREKIFESVWNYENNNQTRSLDVHIRKLRQKLGD--KNNSYIETIRGTGYKIPDN 238


>gi|284037506|ref|YP_003387436.1| transcriptional regulator [Spirosoma linguale DSM 74]
 gi|283816799|gb|ADB38637.1| two component transcriptional regulator, winged helix family
           [Spirosoma linguale DSM 74]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 3/224 (1%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M+ILL+ED+ +LA  I   ++SE + + +   G  G  L     +D I+LD+ L  I GF
Sbjct: 1   MKILLVEDEVSLASFIRKGVESEGYEIDLAYDGLVGQSLADNKTYDVIVLDVNLPHINGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           E+ R ++       V +L+ + S+ DK  G  +GADDY+ KPF   EL+ RI+A+ RR+ 
Sbjct: 61  ELCRHIKREMPRQSVMLLTALDSLPDKESGFGAGADDYLVKPFEFRELMLRIKALARRNS 120

Query: 121 GHA--QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
             +  ++++   DL ++ +A +V   G RI LT +EY ++E L + +  T+++      +
Sbjct: 121 DFSGLKTVLRVADLELDTEAHSVYRAGQRIDLTAREYALLEYLMVNQGRTVSRVDIAEKV 180

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +D   +    +I+V+I  LRKK+      K  + T+ G GYVLR
Sbjct: 181 WDLHFDTSTNVIEVYINYLRKKIDKDYSQK-LVHTIIGMGYVLR 223


>gi|302557885|ref|ZP_07310227.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
 gi|302475503|gb|EFL38596.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
          Length = 253

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 5/229 (2%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L+ EDD+  A  I   L  + + V V   G   ++       D ++LD  L  + G E+
Sbjct: 25  VLVAEDDEKQAELIRRYLVHDGYAVTVVHDGPTALDETVKRPPDLLVLDWMLPGLDGLEI 84

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S+ +D + GL  GADDY++KPF   ELVAR+R ++RR+R  
Sbjct: 85  CRRIRATG-DMPILMLTARSTEDDLLLGLDIGADDYMTKPFRPRELVARVRTLLRRTRQQ 143

Query: 123 AQSL----IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
            +      +  G L+V  D   V V G  ++ T  E++++  L        T+   L+ +
Sbjct: 144 QERTEEVLLTAGPLTVAPDRHEVSVNGRPVNCTPSEFRLLSTLVAAPERVFTRAQLLHCI 203

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKD 227
            D       + +D+ +  LRKK+ ++      + TV G GY L    +D
Sbjct: 204 TDHGRAVTERTVDMHMVNLRKKIESSPRRPELLLTVHGVGYKLSRGRRD 252


>gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
 gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. SPB78]
          Length = 231

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/219 (34%), Positives = 115/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+   +    D I+LD+ L  I GFEV
Sbjct: 10  LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEV 69

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 70  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 128

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +    V G+L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 129 SSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 188

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 189 YLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRL 227


>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
           regulates genes involved in folding/degrading
           periplasmic proteins OmpR family protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
 gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
           regulates genes involved in folding/degrading
           periplasmic proteins (OmpR family) [Xenorhabdus
           nematophila ATCC 19061]
          Length = 230

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++DD+ L   ++ +L+ E FNV +   GE  ++       D ++LD+ +    G E
Sbjct: 3   KILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDS-SIDLLLLDIMMPRKNGIE 61

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
            L+ LR     TPV +L+   S  D+V GL+ GADDY+ KPFN  ELVARIRAI+RRS  
Sbjct: 62  TLKELRQYH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNW 120

Query: 122 HAQ------SLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
             Q       ++    L ++   +     G  + LTG E+ ++ LL+      +++E   
Sbjct: 121 SEQQADIGTPILEIDKLQLSPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLS 180

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
             +   R  P  + ID+ I  LR+KL N      + +T+ GRGY++ 
Sbjct: 181 QEVLGKRLTPFDRAIDMHISNLRRKLPNRTDELPWFKTLRGRGYLMV 227


>gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces
           bikiniensis]
          Length = 228

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 68/233 (29%), Positives = 118/233 (50%), Gaps = 17/233 (7%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +LL+EDD+ +  S+ + L+   + V V   G  G+EL +    D ++LD+ L  + G 
Sbjct: 1   MTVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELFREGRHDLVLLDVMLPGLDGI 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            + R +R      P+ ++S      D V GL++GADDY+ KP +   LVARIR+++RR+ 
Sbjct: 61  GLCRRIRETATD-PILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRAA 119

Query: 121 -----------GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTL 169
                            ++ GDLS++  A  V   G RI L   E +++   +      L
Sbjct: 120 FVSPAPGPADPATPAGPLLFGDLSLDPAALEVRRGGERIALAPTELRLLLQFAAHPGIVL 179

Query: 170 TKEMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
            ++  L  ++D   + + +++D+ + +LRKK+     G   +ETV G GY  +
Sbjct: 180 DRQTLLREVWDYGWDGDTRVVDLCVQRLRKKI-----GAERVETVRGFGYKWK 227


>gi|49082206|gb|AAT50503.1| PA5200 [synthetic construct]
          Length = 248

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 66/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+++DD  L   +E  L  + + V   +  E    L     F  ++LDL L    G  
Sbjct: 12  KILVVDDDARLRRLLERFLDEQGYRVRAVENTEQMDRLLSRELFQLVVLDLMLPGEDGLT 71

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR--- 118
             R LR      P+ +L+       +++GL+ GADDY++KPFN  EL+ARI+A++RR   
Sbjct: 72  ACRRLREQNNQVPIIMLTAKGDEGSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQAP 131

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
               +   A  ++  GD  + L  + ++       LT  E+ +++ L       LT++  
Sbjct: 132 LVPGAPAGADEVVTFGDYQLFLATRELKKGDEVHMLTTGEFAVLKALVQHAREPLTRDKL 191

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           +N       +   + IDV I +LR+ +        YI+TVWG GYV   + 
Sbjct: 192 MNLARGREWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVFVPDG 242


>gi|318040692|ref|ZP_07972648.1| two-component response regulator [Synechococcus sp. CB0101]
          Length = 246

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 61/235 (25%), Positives = 110/235 (46%), Gaps = 7/235 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RI +++DD      +   L  + ++V     GE  +        D ++LD+ L    G  
Sbjct: 11  RIWVVDDDPEQRRLLGTYLTDQGYDVRCLSSGEQLMARLDGQRPDLVVLDVMLPGDDGLT 70

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +LR LR      PV +L+      D++ GL+ GADDY+ KPF   EL ARI A++RR   
Sbjct: 71  LLRRLRDGGDDLPVVMLTARGDGVDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRRVA 130

Query: 122 -------HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                      L+  G+  ++L A+++E  G  + +T  E+ ++       +  L++E  
Sbjct: 131 LPAGTPLAEGQLVEFGENRLDLAARSLERGGVPVVITSGEFSLLSAFVQHPHRPLSRERL 190

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENAKDET 229
           +        + + + +DV + ++RK +        Y++TVWG GYV   + +  +
Sbjct: 191 IELARGPGSDTDSRSMDVQVSRVRKLVEPDPARPRYLQTVWGYGYVFVPDGQPRS 245


>gi|308186053|ref|YP_003930184.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
 gi|308056563|gb|ADO08735.1| Alkaline phosphatase synthesis transcriptional regulatory protein
           sphR [Pantoea vagans C9-1]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/220 (31%), Positives = 118/220 (53%), Gaps = 2/220 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +L++ED+K +   + L L++E+  V+  D  + G+      + D +ILDLGL D  G + 
Sbjct: 4   VLIVEDEKEIRRFVRLALENEDLKVFDADTLQRGLIEAATRKPDLVILDLGLPDGDGTDF 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
           +R LR    + PV +LS  S  +DK+  L +GADDY++KPF   EL+AR+R  +RR  G 
Sbjct: 64  IRDLRQWS-AIPVIVLSARSDEQDKIAALDAGADDYLTKPFGVGELLARVRVALRRHGGQ 122

Query: 123 -AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
             ++ I   D+SV+  A+ V+  G  IHLT  E++++ +L       LT+   L+ ++  
Sbjct: 123 QPEARIQFADVSVDFAARRVQRGGSEIHLTPIEFRLLSILLNNAGKVLTQRQLLSQVWGP 182

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
                   + +++  LR+KL        ++ T  G GY  
Sbjct: 183 NAVEHSHYLRIYMGHLRQKLEANPTRPAHLLTETGIGYRF 222


>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 15998]
 gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
           roseosporus NRRL 11379]
          Length = 228

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 7   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 66

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 67  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 125

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 126 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 185

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 186 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 224


>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
 gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
          Length = 257

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 71/224 (31%), Positives = 115/224 (51%), Gaps = 1/224 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L++ED+K +   +   L +  + V     G++ +E      +D I+LDL L  + G E
Sbjct: 33  RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 92

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +L+ LR     T V ILS    I DKV GL +GA+DY+ KPF+ +EL ARIR++ RR   
Sbjct: 93  LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFV 152

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +  G++  +   +    +G  + LT KE  ++E L +     +++E  + H++D 
Sbjct: 153 QNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVWDA 212

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             +     I V +  LRKKL    G  + I    G GY +RE +
Sbjct: 213 TADSFSGAIRVHMSSLRKKLKAELGY-DPILNKVGEGYKIREES 255


>gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus
           ATCC 19977]
 gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium
           abscessus]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 67/223 (30%), Positives = 116/223 (52%), Gaps = 2/223 (0%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           R+L+++D+  +  ++ + L +  + V     G   +      + + +ILDLGL D+ G E
Sbjct: 3   RVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMDGTE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-SR 120
           VL  LR      PV +LS  +   DKV  L +GADDY++KPF  +E +AR+RA VRR + 
Sbjct: 63  VLAGLR-GWTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRRGTP 121

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
             A+ ++ T    V+L +  V   G  +HLT  E+ M+ +L   +   + ++  L+ ++ 
Sbjct: 122 DSAEPVVHTETFDVDLSSHKVIRDGREVHLTPTEWSMLAVLVRNRGKLVGQKELLHEVWG 181

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
                E   + V++ +LR+KL        ++ T  G GY  +E
Sbjct: 182 PAYSSETHYLRVYLAQLRRKLEIDPAHPKHLLTEAGMGYRFQE 224


>gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family
           [Clostridium beijerinckii NCIMB 8052]
          Length = 218

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 124/225 (55%), Gaps = 9/225 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  L++EDD+A+++ I + L    +    T  G +   L K   FD I++D+ L  I 
Sbjct: 1   MKINILIVEDDEAISNLIRISLGMAGYQCKQTFDGMEAFNLIKQESFDLILMDIMLPGID 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+++ ++   ++ PV  L+  + + DK+ GL+SGA+DYI KPF   EL+ARI  ++RR
Sbjct: 61  GFELMKRIK--SLNVPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              +  + I    L +  D + ++     I LT KE+++I LL   KN  L++E  L  +
Sbjct: 119 YSKN-NNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKI 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + ID  I K+RKKL  A      I+TV+  GY L E
Sbjct: 178 WGYEYMGETRTIDTHIQKIRKKLDIAEN----IKTVYKIGYRLEE 218


>gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
 gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family
           [Clostridium carboxidivorans P7]
 gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium
           carboxidivorans P7]
          Length = 228

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 125/227 (55%), Gaps = 8/227 (3%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I++IED+ ++   +   LK E + V      ++  E  + ++ + ++LD+ L D  GFE
Sbjct: 4   KIIVIEDEFSINDILTFALKGEGYKVKSASSSKEAREFLQDFKPNLVLLDINLPDESGFE 63

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           + + +  A    P+ +L+  + I DKV GL+ GADDYI+KPF+ +E++ R++  +RR   
Sbjct: 64  LCKFI-NANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALRRVDK 122

Query: 122 HAQ-----SLIVTGD-LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
           +         I   D + + L+ + V   G  I L  KEY ++      KN   T+E  L
Sbjct: 123 YRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTREEIL 182

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           + ++      E++ +D+ + +LR KL+  +G  ++IETV+G GYV+R
Sbjct: 183 DKVWGIDYCGEIRTVDIHVRRLRAKLNLDSGQ-SFIETVFGVGYVMR 228


>gi|297560476|ref|YP_003679450.1| two component transcriptional regulator [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296844924|gb|ADH66944.1| two component transcriptional regulator, winged helix family
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 229

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 6/230 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+ +DD  +  ++ + L++  +++ V   G D +        D  ++DLG+  + G 
Sbjct: 1   MRILVADDDPQILRALRVTLRARGYDIVVATNGADALNAAVDQRPDLYVIDLGMPHLDGV 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           EV+  LR    S P+ ++SG +   DKV+ L +GADDY++KPF  +E +AR+RA+ RR  
Sbjct: 61  EVIEGLR-GWTSAPILVVSGRTDSVDKVQALDAGADDYVTKPFAIDEFLARVRALTRRGA 119

Query: 121 -GHAQSLIVTGDLSVNLDAKTVEVQG----HRIHLTGKEYQMIELLSLRKNTTLTKEMFL 175
            G A+ L+  G+L+V+L A+TV  +G      + LT  E++++E+L       +T++  L
Sbjct: 120 CGDAEPLVRLGELTVDLSARTVTREGGSGAEGVRLTPTEWRILEILMRHAGKLVTRQRLL 179

Query: 176 NHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
             ++      +   + +++ +LRKKL        ++ T  G GY  +   
Sbjct: 180 ADVWGSEHVTDTGYLRLYVSQLRKKLEPDPKAPRFLITEPGMGYRFQPPG 229


>gi|218282706|ref|ZP_03488913.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
 gi|218216407|gb|EEC89945.1| hypothetical protein EUBIFOR_01499 [Eubacterium biforme DSM 3989]
          Length = 237

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/225 (34%), Positives = 122/225 (54%), Gaps = 6/225 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +IL+IEDD A+ + I   L+ EN+   +    + GI     Y  D ++LDLGL D+ G E
Sbjct: 5   QILVIEDDVAVGNLITTTLEMENYQFRLAKTAKQGIMNVLSYNPDIMLLDLGLPDMDGLE 64

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V++ +R    + P+ ++S  S  +DKV+ L  GADDY++KPF+ +EL+AR+R  +RR   
Sbjct: 65  VIKKVRSWS-NIPIIVVSARSEDQDKVKALDLGADDYLTKPFSVDELLARLRVTIRRLNN 123

Query: 122 HA-----QSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLN 176
                  +S+   GDL++N     V   GH IHLT  EY+++ +L+   +  LT    + 
Sbjct: 124 SQTISVNESVYENGDLTINYAQGCVYENGHEIHLTPIEYKLLCVLAKNTDKVLTHNYIMQ 183

Query: 177 HLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
            ++      E   + VF+  LRKK+        YI+T  G GY +
Sbjct: 184 EVWGSVQGTETPSLRVFMATLRKKIEPDTSNPKYIQTHVGVGYRM 228


>gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1]
          Length = 227

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 120/221 (54%), Gaps = 5/221 (2%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M +L+ EDD+ +A  I   L ++   V           + K  EFD ++LDLGL D  G 
Sbjct: 1   MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGLPDEDGL 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
           ++L+ LR + +  PV IL+   S+ D+V GLQ+GADDY+ KPF+  EL AR+  ++RR  
Sbjct: 61  KLLQQLRHSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
           G + +LI  G L+ +  ++   + G  + L+ +E  +++ L   +   L+ E   + +Y 
Sbjct: 121 GRSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVYG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
             DE E   ++V I  LR+KL N       +ETV G GY L
Sbjct: 181 FNDELESNALNVHIHHLRRKLGNG-----IVETVRGLGYRL 216


>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
 gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
 gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
 gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
 gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
          Length = 223

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 62/222 (27%), Positives = 116/222 (52%), Gaps = 4/222 (1%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +ILL++D++ +   ++L L    +       G + ++L +  +FD I+LD+ + ++ G++
Sbjct: 3   KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
               +R    + P+ +L+  +   D V+GL  GADDYI+KPF++  LVARI AI+RR++ 
Sbjct: 63  TCYQIRQIS-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRTKK 121

Query: 122 HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDG 181
                +    +  +    TV V   +I LT  E+ ++ L     N   +++  +  ++  
Sbjct: 122 DG--FVSFNGIEWDKTKHTVTVYDEKISLTPIEFSLLRLFLQNTNRAYSRDDLIEKIWGY 179

Query: 182 RDEPEVKIIDVFICKLRKKLSNAAGG-KNYIETVWGRGYVLR 222
             + E + ID  I  +R KL       +NY+ETV+  GY  +
Sbjct: 180 ETDIEYRTIDSHIRNIRDKLRKKGFPVENYLETVYKVGYKWK 221


>gi|320107430|ref|YP_004183020.1| winged helix family two component transcriptional regulator
           [Terriglobus saanensis SP1PR4]
 gi|319925951|gb|ADV83026.1| two component transcriptional regulator, winged helix family
           [Terriglobus saanensis SP1PR4]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 76/221 (34%), Positives = 124/221 (56%), Gaps = 1/221 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           M++L+IEDD+ +A+ ++  L  +  +V+V+  G+DG+EL +   FD ++LD+ L    GF
Sbjct: 1   MKLLIIEDDRRIANLLQQGLSEDGHSVFVSHRGDDGLELIQSQYFDMVVLDIMLPGRDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +L+  R A+ + P+ IL+    + D VRGL  GADDY++KPF  E L+AR+RA+ RR +
Sbjct: 61  SILKQARHARYAMPILILTARDGMADIVRGLDLGADDYLTKPFQLEILLARVRAMGRRGQ 120

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
                 +  GDL ++   K +      I LT KE+ ++ELL  R    +++   +   + 
Sbjct: 121 VPLLDQLRVGDLILDRSQKLLLRGDLEIPLTRKEFVLLELLMRRPQQVISRNELIEVGWG 180

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              E     +D +I  LR K+ N  G  + I TV  +GY L
Sbjct: 181 YDAEVSDNSVDFYIHSLRSKI-NVDGQPSMIRTVRAQGYAL 220


>gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16]
 gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16]
          Length = 232

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 5/226 (2%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           RIL++ED++A+A +I   L+++        LG   +E  +    D +ILD+GL D+ GFE
Sbjct: 8   RILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALERMRAGAADLVILDVGLPDLSGFE 67

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           V R LR    + PV  L+      D++ GL+ GADDY+ KPF+  EL AR+RAI+RR+RG
Sbjct: 68  VCRTLRTFS-NAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126

Query: 122 ---HAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
               A         + + D   +  +G  + LT  EY ++  L        ++   +  +
Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186

Query: 179 YDGRDEPEVKIIDVFICKLRKKL-SNAAGGKNYIETVWGRGYVLRE 223
           ++   +   + +D  I  LR KL   +A G   I T  G GY L  
Sbjct: 187 WEDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLEP 232


>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
           venezuelae ATCC 10712]
          Length = 263

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 70/231 (30%), Positives = 121/231 (52%), Gaps = 17/231 (7%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           ILL+EDD+ +  S+ + L+   ++V V   G  G+EL +  + D ++LD+ L  + G  +
Sbjct: 38  ILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPALDGIGL 97

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R    + P+ ++S      D V GL++GADDY+ KP +   LVARIR+++RR+   
Sbjct: 98  CRRIRETS-TAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRASAA 156

Query: 123 AQSL-----------IVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTK 171
           A              +V GDL+++  A  V   G  I L   E +++   S      L +
Sbjct: 157 APPPAGPGAPGPAGLLVFGDLTIDPAALEVRRDGQEIALAPSELRLLLEFSAHPGIVLDR 216

Query: 172 EMFLNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLR 222
           +  L +++D   + + +++D+ + +LR+K+         IETV G GY LR
Sbjct: 217 QTLLRNVWDYGWDGDTRVVDLCVQRLRRKIGAD-----RIETVRGFGYKLR 262


>gi|315657068|ref|ZP_07909953.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492460|gb|EFU82066.1| phosphate regulon response regulator [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 227

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 74/229 (32%), Positives = 116/229 (50%), Gaps = 11/229 (4%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           I  +EDD  +   +   L S  F        ++  E       + I+LD+ L  + G ++
Sbjct: 2   IYFVEDDLNIRDLVVYTLGSTGFTARGFADYQEFREAMMELLPEMILLDIMLPGVDGIQI 61

Query: 63  LRALRVAKIS--TPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR-- 118
           LR +R    +   PV +++   +  DKV+ L  GADDYI+KPF   ELV+RIRA++RR  
Sbjct: 62  LRRIRANPETKAIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLRRVP 121

Query: 119 ----SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMF 174
                    + ++  G + +NL   TV V+G  + LT KEYQ++E L  +     +++  
Sbjct: 122 RLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSRDKL 181

Query: 175 LNHLYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           L+ ++        + +DV I  LRKKL  AA    +IETV G GY + E
Sbjct: 182 LDSIWGYSFHGGTRTVDVHIRTLRKKLGPAA---KHIETVRGVGYKISE 227


>gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
 gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB
           [Streptomyces sp. C]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 77/219 (35%), Positives = 114/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG++L +    D I+LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           A      G L ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 ASDSATFGTLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+         I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEEVPSSPTLIRTVRGVGYRL 221


>gi|289578117|ref|YP_003476744.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
 gi|289527830|gb|ADD02182.1| two component transcriptional regulator, winged helix family
           [Thermoanaerobacter italicus Ab9]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 10/228 (4%)

Query: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61
           +I L+ED+++L   +E  L+ E + V     G   ++  K    D  ILD+ L  I G+E
Sbjct: 4   KIYLVEDERSLNVLLEKYLQREGYEVTTFLDGNSAMQRIKDL-PDLWILDIMLPGIDGYE 62

Query: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRG 121
           +++A++    +TPV  +S  +   D+V GL+ G+DDY+SKPF   ELV R   ++ R  G
Sbjct: 63  LIKAIKQYNQNTPVIFISARNEELDRVVGLELGSDDYLSKPFLPRELVIRTNKLMERIYG 122

Query: 122 H----AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNH 177
           +    A++ I  G+  ++   +T+    + I LT KE++++      KN  L++E  LN 
Sbjct: 123 NNEKKAENDINIGNYRISKRQRTIFDGDNEIQLTNKEFELLNYFVENKNILLSREQILNK 182

Query: 178 LYDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
           ++        ++ID  I +LRKKL      K  IETV+G GY L E +
Sbjct: 183 VWGEDYFGSDRVIDDTIRRLRKKL-----NKLKIETVYGYGYRLVEKS 225


>gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 224

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 63/218 (28%), Positives = 117/218 (53%), Gaps = 2/218 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           IL++EDD      I  +L+   +N +V   G + + L +   FD ++LDL + ++ G+++
Sbjct: 4   ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLMMPEMDGYQL 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
              LR A  + P+ +++    I+ K  G   G DDY++KPF+++EL+ RI+A++RR++  
Sbjct: 64  CEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQIA 123

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
            +  +V G+  ++ +A TV     +I L  KE+ ++  L    N   T+   L  ++   
Sbjct: 124 NERRLVVGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWGPD 183

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYV 220
            E +   ++V I +LR K  ++   +  I TV G GY 
Sbjct: 184 TETDDHTLNVHINRLRDKFRDSPDFE--IVTVRGLGYK 219


>gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B]
 gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B]
          Length = 218

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 78/225 (34%), Positives = 128/225 (56%), Gaps = 9/225 (4%)

Query: 1   MRI--LLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIP 58
           M+I  L+IEDD+A+++ I++ L    +       G +   L K   FD I++D+ L  + 
Sbjct: 1   MKINVLIIEDDEAISNLIKINLSMVGYKSKQLFDGLEAFNLLKEESFDLILMDIMLPGMD 60

Query: 59  GFEVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR 118
           GFE+++ ++   ++ PV  L+  + + DKV GL+SGA+DYI KPF   EL+ARI  ++RR
Sbjct: 61  GFELMKKIK--DLNIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRR 118

Query: 119 SRGHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHL 178
              ++ + I  G+L +  + ++++     I LT KE++++ LL   KN  L++E  L  +
Sbjct: 119 YSKNS-NCIEFGNLKIYEEERSIKKDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKI 177

Query: 179 YDGRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRE 223
           +      E + ID  I KLRKKL  A      I+TV+  GY L E
Sbjct: 178 WGYEYMGETRTIDNHIQKLRKKLDIADN----IKTVYKIGYRLEE 218


>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
 gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
           NRRL 15998]
          Length = 225

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 75/219 (34%), Positives = 116/219 (52%), Gaps = 1/219 (0%)

Query: 3   ILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFEV 62
           +LLIEDD A+  ++EL L  +   V     GEDG+EL +    D ++LD+ L  I GFEV
Sbjct: 4   LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEV 63

Query: 63  LRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSRGH 122
            R +R      P+ +L+  S   D V GL+SGADDY+ KP     L ARIRA++RR    
Sbjct: 64  CRRIRRT-DQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 122

Query: 123 AQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGR 182
           +      G++ ++  A TV   G  + LT  E +++  LS R    L+++  L  +++  
Sbjct: 123 STDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVWEHD 182

Query: 183 DEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVL 221
              + +++D  + +LR K+ +       I TV G GY L
Sbjct: 183 YLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRL 221


>gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
 gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
          Length = 223

 Score =  244 bits (625), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 60/225 (26%), Positives = 111/225 (49%), Gaps = 2/225 (0%)

Query: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGF 60
           MRIL+++DD  +   + + L  E + V   +  +  + L      D  ++D+ +  + GF
Sbjct: 1   MRILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVMMPGMDGF 60

Query: 61  EVLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRRSR 120
            +   L       PV +L+    +EDK RG  +G+DDY+ KPF  +EL+ RI AI+RR  
Sbjct: 61  TLTETL-TQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRMD 119

Query: 121 GHAQSLIVTGDLSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYD 180
              Q  I  G L ++  +  V +    + L  KE++++ LL+ R N   T+   +  ++ 
Sbjct: 120 KKNQITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQVWG 179

Query: 181 GRDEPEVKIIDVFICKLRKKLSNAAGGKNYIETVWGRGYVLRENA 225
              + + + ++  + ++R++L+        I TV G GY L   +
Sbjct: 180 YDYDGDEQTLNTHVKRVRERLNRFDTAVEII-TVRGVGYKLEATS 223


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.317    0.201    0.693 

Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,107,693
Number of Sequences: 14124377
Number of extensions: 366660584
Number of successful extensions: 1406254
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 119273
Number of HSP's successfully gapped in prelim test: 29570
Number of HSP's that attempted gapping in prelim test: 1099522
Number of HSP's gapped (non-prelim): 162626
length of query: 236
length of database: 4,842,793,630
effective HSP length: 135
effective length of query: 101
effective length of database: 2,936,002,735
effective search space: 296536276235
effective search space used: 296536276235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 80 (34.8 bits)